BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026881
(231 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|224129716|ref|XP_002328785.1| predicted protein [Populus trichocarpa]
gi|222839083|gb|EEE77434.1| predicted protein [Populus trichocarpa]
Length = 254
Score = 295 bits (754), Expect = 1e-77, Method: Compositional matrix adjust.
Identities = 148/214 (69%), Positives = 173/214 (80%), Gaps = 2/214 (0%)
Query: 15 LIFPKFNDNRKFHLNRTRNFGQRIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSR 74
L+FP F + L+ + +R+ AL S+ E PNA RRK D LWRGGFSLGVDLGLSR
Sbjct: 42 LLFPNFTTS-SLQLDSDKPCRRRLRALLSIHEIPPNALRRKNDPLWRGGFSLGVDLGLSR 100
Query: 75 TGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVR 134
+G+ALSKGF VRPLTVL+LRG+KLEL+LLEIA+ EE DEFIIGLPKSWDG ETPQSNKVR
Sbjct: 101 SGVALSKGFTVRPLTVLELRGQKLELRLLEIAENEEVDEFIIGLPKSWDGKETPQSNKVR 160
Query: 135 SVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAYAAVILLERYF 194
SVAGR AV AA RGWRVYL DEH TS EA +RMI+MGL+KS RQ K DAYAAV++LERYF
Sbjct: 161 SVAGRFAVLAAHRGWRVYLQDEHGTSTEATNRMIDMGLNKSTRQKKVDAYAAVMVLERYF 220
Query: 195 SMSGQGTEIVLPKRVDLQEKLRKG-ALDNDFFPD 227
S G+GTE+VLPK+ DLQEKL++G D DF+P+
Sbjct: 221 STFGEGTELVLPKQSDLQEKLQRGPPADIDFYPE 254
>gi|297734533|emb|CBI16584.3| unnamed protein product [Vitis vinifera]
Length = 679
Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 146/196 (74%), Positives = 166/196 (84%), Gaps = 2/196 (1%)
Query: 37 RIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGE 96
RI A+S + E LPNA RRK + W GGFSLGVDLG+SRTGLALSKGF VRPL+VLKLRG+
Sbjct: 485 RIRAVS-LNEILPNALRRKHNPHWTGGFSLGVDLGMSRTGLALSKGFSVRPLSVLKLRGQ 543
Query: 97 KLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156
KLELQLLEIA REE DEFIIGLP S DG ETPQSNKVRSVAGRLA RAAERGWRVYL DE
Sbjct: 544 KLELQLLEIAGREEVDEFIIGLPVSDDGKETPQSNKVRSVAGRLAARAAERGWRVYLQDE 603
Query: 157 HRTSAEAVDRMINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKLR 216
H TS EA+ MI+MG SKSARQ + DAYAA+++LERYFSM+GQGTE+VLPK+++LQEKLR
Sbjct: 604 HGTSEEALSLMIDMGHSKSARQNRIDAYAAMMVLERYFSMAGQGTELVLPKQLELQEKLR 663
Query: 217 KGAL-DNDFFPDKPEG 231
+G D DFFP+ +G
Sbjct: 664 RGPPKDADFFPEDFDG 679
>gi|359489199|ref|XP_002275849.2| PREDICTED: putative Holliday junction resolvase [Vitis vinifera]
Length = 229
Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 146/196 (74%), Positives = 166/196 (84%), Gaps = 2/196 (1%)
Query: 37 RIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGE 96
RI A+S + E LPNA RRK + W GGFSLGVDLG+SRTGLALSKGF VRPL+VLKLRG+
Sbjct: 35 RIRAVS-LNEILPNALRRKHNPHWTGGFSLGVDLGMSRTGLALSKGFSVRPLSVLKLRGQ 93
Query: 97 KLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156
KLELQLLEIA REE DEFIIGLP S DG ETPQSNKVRSVAGRLA RAAERGWRVYL DE
Sbjct: 94 KLELQLLEIAGREEVDEFIIGLPVSDDGKETPQSNKVRSVAGRLAARAAERGWRVYLQDE 153
Query: 157 HRTSAEAVDRMINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKLR 216
H TS EA+ MI+MG SKSARQ + DAYAA+++LERYFSM+GQGTE+VLPK+++LQEKLR
Sbjct: 154 HGTSEEALSLMIDMGHSKSARQNRIDAYAAMMVLERYFSMAGQGTELVLPKQLELQEKLR 213
Query: 217 KGAL-DNDFFPDKPEG 231
+G D DFFP+ +G
Sbjct: 214 RGPPKDADFFPEDFDG 229
>gi|356506432|ref|XP_003521987.1| PREDICTED: putative Holliday junction resolvase-like [Glycine max]
Length = 226
Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/193 (70%), Positives = 165/193 (85%), Gaps = 2/193 (1%)
Query: 37 RIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGE 96
R+ AL+ ++E PNA R+K++ WRGGFSLG+DLGL+RTGLALSKGF +RPLTVL+LRG+
Sbjct: 34 RVKALT-LDELPPNALRKKREPQWRGGFSLGLDLGLARTGLALSKGFSIRPLTVLELRGQ 92
Query: 97 KLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156
KLE+Q++ IA+ EE DEFIIGLPKS DG ETPQSNKVRSVAGRLAVRAAERGWRVYL DE
Sbjct: 93 KLEVQIINIAEEEEVDEFIIGLPKSSDGKETPQSNKVRSVAGRLAVRAAERGWRVYLQDE 152
Query: 157 HRTSAEAVDRMINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKLR 216
H T+ EA DRMINM LSKS++Q K DAYAA+++LERYFS SGQGTE+VLPK ++LQ KL+
Sbjct: 153 HGTTEEAKDRMINMSLSKSSQQKKLDAYAAMMVLERYFSTSGQGTELVLPKNLELQAKLQ 212
Query: 217 KGAL-DNDFFPDK 228
+G D DFF D+
Sbjct: 213 RGPPKDVDFFSDE 225
>gi|255573708|ref|XP_002527775.1| hydrolase, acting on ester bonds, putative [Ricinus communis]
gi|223532810|gb|EEF34585.1| hydrolase, acting on ester bonds, putative [Ricinus communis]
Length = 239
Score = 261 bits (667), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 149/239 (62%), Positives = 177/239 (74%), Gaps = 14/239 (5%)
Query: 1 MCSLQSQHFLNS---PLLI--FPKFNDNRKF------HLNRTRNFGQRIGALSSVEEFLP 49
MCSL+S ++ PL I PK + F + NF R A+ S EE P
Sbjct: 3 MCSLKSFCIQSTQLFPLSINSLPKVINTSAFLRQSLPQICIHNNFKLR--AVLSTEEVPP 60
Query: 50 NATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE 109
NA RR+ D WRGGFSLG+DLGLSRTGLA+SKGF +PLTVL+LRG+KLE +LLEIA+ E
Sbjct: 61 NAARRRSDPQWRGGFSLGIDLGLSRTGLAISKGFSFKPLTVLELRGQKLETRLLEIAEDE 120
Query: 110 ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN 169
E DEFIIGLPKSWDG ET Q NKVRSVAGR+AVRAAERGWRVYL DEH TS +A MIN
Sbjct: 121 EADEFIIGLPKSWDGKETSQCNKVRSVAGRIAVRAAERGWRVYLQDEHGTSTDATYWMIN 180
Query: 170 MGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKLRKGAL-DNDFFPD 227
+GLSK ARQ DAYAAV++LERY++ SG+GTE+V+PKR+DLQ+KLRKG D DF+P+
Sbjct: 181 VGLSKGARQKSIDAYAAVMVLERYYAASGEGTELVIPKRLDLQDKLRKGPPKDIDFYPE 239
>gi|297844086|ref|XP_002889924.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
gi|297335766|gb|EFH66183.1| DNA binding protein [Arabidopsis lyrata subsp. lyrata]
Length = 238
Score = 259 bits (662), Expect = 6e-67, Method: Compositional matrix adjust.
Identities = 146/241 (60%), Positives = 179/241 (74%), Gaps = 19/241 (7%)
Query: 1 MCSLQS----------QHFLNSPLLIFPKFNDNRKFHLNRTRNFGQRIGALSSVEEFLPN 50
MCSL S Q ++N+PL+ P+ + +RN + A +S++E PN
Sbjct: 1 MCSLHSLSSVAISFRTQKYVNTPLV--PRLSSIG------SRNNPLPLRAATSIDEIPPN 52
Query: 51 ATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREE 110
A RRK D WRGGFSLGVDLGLSRTG+A+SKG+ V+PLTVLK RG+KLE +LLEIA+ EE
Sbjct: 53 AVRRKIDRDWRGGFSLGVDLGLSRTGVAISKGYTVKPLTVLKSRGQKLETRLLEIAEEEE 112
Query: 111 TDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINM 170
DEFIIGLP+S DG ET QSNK+RSVAGRLAV+AAERGWRVY+ DEH T++EA DRMI M
Sbjct: 113 VDEFIIGLPRSSDGKETIQSNKIRSVAGRLAVQAAERGWRVYVFDEHGTTSEASDRMIVM 172
Query: 171 GLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKLRKGA-LDNDFFPDKP 229
GLSKS RQ ++DAYAAVILLERYFS G G EI+LPK ++LQ K++ GA +D DF P+
Sbjct: 173 GLSKSERQNRSDAYAAVILLERYFSTQGLGVEIILPKSLELQAKIKNGAPVDPDFNPENL 232
Query: 230 E 230
E
Sbjct: 233 E 233
>gi|449431960|ref|XP_004133768.1| PREDICTED: putative Holliday junction resolvase-like [Cucumis
sativus]
gi|449522992|ref|XP_004168509.1| PREDICTED: putative Holliday junction resolvase-like [Cucumis
sativus]
Length = 235
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 130/185 (70%), Positives = 153/185 (82%), Gaps = 2/185 (1%)
Query: 41 LSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL 100
+SS+E PNA RRK D WRGGFSLGVDLG SRTGLALSKGF RPLTVL+LRG+KLE
Sbjct: 50 ISSIE-LPPNALRRKLDPHWRGGFSLGVDLGTSRTGLALSKGFSTRPLTVLELRGQKLEA 108
Query: 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160
+L+EIA++EE DEFIIGLPKS DG ETPQSNK+RS+AGR+A RAAERGWRVYL DEH T+
Sbjct: 109 KLIEIAEQEEADEFIIGLPKSCDGKETPQSNKIRSIAGRVAARAAERGWRVYLYDEHGTT 168
Query: 161 AEAVDRMINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKLRKG-A 219
AEA MI+ GL+KS RQ K DAYAA+++LERYFS SGQGTE+++PK + LQ+KL +G
Sbjct: 169 AEAESHMISRGLNKSTRQKKIDAYAAMMVLERYFSTSGQGTELLVPKSLVLQDKLIEGPP 228
Query: 220 LDNDF 224
D DF
Sbjct: 229 TDPDF 233
>gi|79317769|ref|NP_001031028.1| putative holliday junction resolvase [Arabidopsis thaliana]
gi|332190735|gb|AEE28856.1| putative holliday junction resolvase [Arabidopsis thaliana]
Length = 254
Score = 245 bits (626), Expect = 8e-63, Method: Compositional matrix adjust.
Identities = 133/192 (69%), Positives = 160/192 (83%), Gaps = 1/192 (0%)
Query: 40 ALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLE 99
A++S++E PNA RRK D WRGGFSLGVDLGLSRTG+A+SKG+ V+PLTVLK RG+KLE
Sbjct: 58 AVTSIDEIPPNAVRRKIDRNWRGGFSLGVDLGLSRTGIAISKGYTVKPLTVLKSRGQKLE 117
Query: 100 LQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT 159
+LLEIA+ EE DEFIIGLP+S DG ET QSNK+RSVAGRLA++AAERGWRVY+ DEH T
Sbjct: 118 TRLLEIAEEEEADEFIIGLPRSSDGKETIQSNKIRSVAGRLAIQAAERGWRVYVFDEHGT 177
Query: 160 SAEAVDRMINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKLRKGA 219
++EA DRMI MGLSKS RQ ++DAYAAVILLERYFS G G EI+LPK ++LQ K++ GA
Sbjct: 178 TSEASDRMIVMGLSKSERQNRSDAYAAVILLERYFSTQGLGIEIILPKSLELQAKIKNGA 237
Query: 220 -LDNDFFPDKPE 230
+D DF P+ E
Sbjct: 238 PVDPDFNPENLE 249
>gi|147819080|emb|CAN65349.1| hypothetical protein VITISV_000639 [Vitis vinifera]
Length = 213
Score = 239 bits (610), Expect = 6e-61, Method: Compositional matrix adjust.
Identities = 128/196 (65%), Positives = 146/196 (74%), Gaps = 22/196 (11%)
Query: 37 RIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGE 96
RI A+S + E LPNA RRK + W GGFSLGVDLG+SRTGLALSKGF VRPL+
Sbjct: 39 RIRAVS-LNEILPNALRRKHNPHWTGGFSLGVDLGMSRTGLALSKGFSVRPLS------- 90
Query: 97 KLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156
E DEFIIGLP S DG ETPQSNKVRSVAGRLA RAAERGWRVYL DE
Sbjct: 91 -------------EVDEFIIGLPVSDDGKETPQSNKVRSVAGRLAARAAERGWRVYLQDE 137
Query: 157 HRTSAEAVDRMINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKLR 216
H TS EA+ MI+MG SKSARQ DAYAA+++LERYFSM+GQGTE+VLPK+++LQEKLR
Sbjct: 138 HGTSEEALSFMIDMGHSKSARQNSIDAYAAMMVLERYFSMAGQGTELVLPKQLELQEKLR 197
Query: 217 KGAL-DNDFFPDKPEG 231
+G D DFFP+ +G
Sbjct: 198 RGPPKDADFFPEDFDG 213
>gi|414867730|tpg|DAA46287.1| TPA: holliday junction resolvase [Zea mays]
Length = 235
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 112/169 (66%), Positives = 141/169 (83%), Gaps = 2/169 (1%)
Query: 49 PNATRRKKDSLWRGG-FSLGVDLGLSRTGLALSKGFCV-RPLTVLKLRGEKLELQLLEIA 106
PNA RR +D LW GG FSLGVDLG +RTGLA+ +G RPLTVL+LRG+KLEL LL++A
Sbjct: 57 PNARRRGRDPLWHGGGFSLGVDLGDARTGLAIGRGITFPRPLTVLRLRGQKLELALLDVA 116
Query: 107 QREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166
+++E DE IIGLP S DGSETPQSNKVRSV GRLAV+AA+RG RVYL DE+ TS +A+D
Sbjct: 117 RQQEADELIIGLPVSADGSETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALDY 176
Query: 167 MINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKL 215
MI+ G+ KSAR TK+DAYAAV++L+RYF+ SG+G +IVLP++ +LQ+KL
Sbjct: 177 MISRGVKKSARDTKSDAYAAVMILKRYFTSSGRGAKIVLPRQPELQDKL 225
>gi|226500782|ref|NP_001149481.1| holliday junction resolvase [Zea mays]
gi|195627468|gb|ACG35564.1| holliday junction resolvase [Zea mays]
Length = 235
Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 112/169 (66%), Positives = 141/169 (83%), Gaps = 2/169 (1%)
Query: 49 PNATRRKKDSLWRGG-FSLGVDLGLSRTGLALSKGFCV-RPLTVLKLRGEKLELQLLEIA 106
PNA RR +D LW GG FSLGVDLG +RTGLA+ +G RPLTVL+LRG+KLEL LL++A
Sbjct: 57 PNARRRGRDPLWHGGGFSLGVDLGDARTGLAIGRGITFPRPLTVLRLRGQKLELALLDVA 116
Query: 107 QREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166
+++E DE IIGLP S DGSETPQSNKVRSV GRLAV+AA+RG RVYL DE+ TS +A+D
Sbjct: 117 RQQEADELIIGLPVSADGSETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDALDY 176
Query: 167 MINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKL 215
MI+ G+ KSAR TK+DAYAAV++L+RYF+ SG+G +IVLP++ +LQ+KL
Sbjct: 177 MISRGVKKSARDTKSDAYAAVMILKRYFTSSGRGAKIVLPRQPELQDKL 225
>gi|414867731|tpg|DAA46288.1| TPA: hypothetical protein ZEAMMB73_583211 [Zea mays]
Length = 236
Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 112/170 (65%), Positives = 141/170 (82%), Gaps = 3/170 (1%)
Query: 49 PNATRRKKDSLWRGG-FSLGVDLGLSRTGLALSKGFCV-RPLTVLKLRGEKLELQLLEIA 106
PNA RR +D LW GG FSLGVDLG +RTGLA+ +G RPLTVL+LRG+KLEL LL++A
Sbjct: 57 PNARRRGRDPLWHGGGFSLGVDLGDARTGLAIGRGITFPRPLTVLRLRGQKLELALLDVA 116
Query: 107 QREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAE-RGWRVYLLDEHRTSAEAVD 165
+++E DE IIGLP S DGSETPQSNKVRSV GRLAV+AA+ RG RVYL DE+ TS +A+D
Sbjct: 117 RQQEADELIIGLPVSADGSETPQSNKVRSVVGRLAVQAAQSRGLRVYLQDEYGTSTDALD 176
Query: 166 RMINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKL 215
MI+ G+ KSAR TK+DAYAAV++L+RYF+ SG+G +IVLP++ +LQ+KL
Sbjct: 177 YMISRGVKKSARDTKSDAYAAVMILKRYFTSSGRGAKIVLPRQPELQDKL 226
>gi|115483352|ref|NP_001065346.1| Os10g0555200 [Oryza sativa Japonica Group]
gi|13194228|gb|AAK15446.1|AC037426_8 hypothetical protein [Oryza sativa Japonica Group]
gi|31433450|gb|AAP54963.1| expressed protein [Oryza sativa Japonica Group]
gi|113639878|dbj|BAF27183.1| Os10g0555200 [Oryza sativa Japonica Group]
gi|125575650|gb|EAZ16934.1| hypothetical protein OsJ_32416 [Oryza sativa Japonica Group]
gi|215697176|dbj|BAG91170.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 237
Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 108/170 (63%), Positives = 136/170 (80%), Gaps = 5/170 (2%)
Query: 47 FLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCV-RPLTVLKLRGEKLELQLLEI 105
LPNA RR+ GFSLGVDLG +RTG+A+ +G + RPLTVLKLRG+KLEL LL+I
Sbjct: 62 LLPNAARRRDGC----GFSLGVDLGEARTGVAVGRGITLPRPLTVLKLRGQKLELMLLDI 117
Query: 106 AQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVD 165
AQ++E DE I+GLP S DGSETPQSNKVRSV GRLAV+AA+RG RVYL DE+ T+ +A++
Sbjct: 118 AQQQEADELIVGLPVSADGSETPQSNKVRSVVGRLAVQAADRGLRVYLQDEYGTTIDALE 177
Query: 166 RMINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKL 215
MI+ G+ +SAR K+DAY+A+++LERYFS SGQG +IVLPK+ LQ KL
Sbjct: 178 FMISRGVKRSARDVKSDAYSAMMILERYFSSSGQGAKIVLPKQPQLQSKL 227
>gi|125532910|gb|EAY79475.1| hypothetical protein OsI_34603 [Oryza sativa Indica Group]
Length = 237
Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 108/170 (63%), Positives = 135/170 (79%), Gaps = 5/170 (2%)
Query: 47 FLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCV-RPLTVLKLRGEKLELQLLEI 105
LPNA RR+ FSLGVDLG +RTG+A+ +G + RPLTVLKLRG+KLEL LL+I
Sbjct: 62 LLPNAARRRDGCR----FSLGVDLGEARTGVAVGRGITLPRPLTVLKLRGQKLELMLLDI 117
Query: 106 AQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVD 165
AQ++E DE I+GLP S DGSETPQSNKVRSV GRLAV+AA+RG RVYL DEH T+ +A++
Sbjct: 118 AQQQEADELIVGLPVSADGSETPQSNKVRSVVGRLAVQAADRGLRVYLQDEHGTTIDALE 177
Query: 166 RMINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKL 215
MI+ G+ +SAR K+DAY+A+++LERYFS SGQG +IVLPK+ LQ KL
Sbjct: 178 FMISRGVKRSARDVKSDAYSAMMILERYFSSSGQGAKIVLPKQPQLQSKL 227
>gi|357141055|ref|XP_003572063.1| PREDICTED: putative Holliday junction resolvase-like [Brachypodium
distachyon]
Length = 233
Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 108/169 (63%), Positives = 135/169 (79%), Gaps = 6/169 (3%)
Query: 49 PNATRRKKDSLWRGG-FSLGVDLGLSRTGLALSKGFC-VRPLTVLKLRGEKLELQLLEIA 106
PNA + LW GG FSLGVDLG +RTGLA+ +G RPLTVLKLRG+KLEL LL++A
Sbjct: 58 PNA----RQPLWHGGGFSLGVDLGDARTGLAVGRGITQPRPLTVLKLRGQKLELVLLDVA 113
Query: 107 QREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR 166
Q +E DE I+GLP S DG ETPQSNKVRSV GRLA++AA+RG+RVYL DEH TS +A++
Sbjct: 114 QEQEADELIVGLPVSADGRETPQSNKVRSVVGRLAIQAADRGFRVYLQDEHGTSMDALNY 173
Query: 167 MINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKL 215
MI+ G+ ++ R K+DAYAAV++LERYFS SGQ T+IVLPK+ +LQ+KL
Sbjct: 174 MISRGVKRTGRDVKSDAYAAVMILERYFSSSGQETKIVLPKQQELQDKL 222
>gi|242035117|ref|XP_002464953.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor]
gi|241918807|gb|EER91951.1| hypothetical protein SORBIDRAFT_01g029390 [Sorghum bicolor]
Length = 214
Score = 190 bits (482), Expect = 5e-46, Method: Compositional matrix adjust.
Identities = 100/155 (64%), Positives = 122/155 (78%), Gaps = 2/155 (1%)
Query: 47 FLPNATRRKKDSLWRGG-FSLGVDLGLSRTGLALSKGFCV-RPLTVLKLRGEKLELQLLE 104
LPNA RR +D LW GG FSLGVDLG +RTGLA+ +G + RPLTVLKLRG+KLEL LL+
Sbjct: 55 LLPNARRRGRDPLWHGGGFSLGVDLGDARTGLAVGRGITLPRPLTVLKLRGQKLELTLLD 114
Query: 105 IAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAV 164
+A+++E DE IIGLP S DG ETPQSNKVRSV GRLAV+AA+RG RVYL DE+ TS +A+
Sbjct: 115 VARQQEADELIIGLPVSADGRETPQSNKVRSVVGRLAVQAAQRGLRVYLQDEYGTSTDAL 174
Query: 165 DRMINMGLSKSARQTKTDAYAAVILLERYFSMSGQ 199
+ MI+ G+ KSAR T++DAYAAV+ R FS Q
Sbjct: 175 EYMISRGVKKSARDTQSDAYAAVVKGLRLFSPGNQ 209
>gi|357451421|ref|XP_003595987.1| hypothetical protein MTR_2g064690 [Medicago truncatula]
gi|355485035|gb|AES66238.1| hypothetical protein MTR_2g064690 [Medicago truncatula]
Length = 208
Score = 176 bits (445), Expect = 9e-42, Method: Compositional matrix adjust.
Identities = 92/144 (63%), Positives = 114/144 (79%), Gaps = 4/144 (2%)
Query: 88 LTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAER 147
+ VLKLRG+KLE++++ IA+ EE DEFIIGL KS DG ET QSN VRSVAGRLA+RAAE
Sbjct: 65 ICVLKLRGQKLEVRIMNIAEEEEADEFIIGLSKSSDGEETIQSNIVRSVAGRLAIRAAEW 124
Query: 148 GWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAYAAVI--LLERYFSMSGQGTEIVL 205
GWRVYL DE+ T+ A+DRMINMG+++S +Q K DAYA VI LLERYFS SGQ E+V+
Sbjct: 125 GWRVYLHDEYGTTNAAIDRMINMGVNRS-QQKKQDAYAVVISMLLERYFSTSGQKAELVV 183
Query: 206 PKRVDLQEKLRKG-ALDNDFFPDK 228
PK ++LQ KLR G D+D+F D+
Sbjct: 184 PKNLELQGKLRSGPPRDDDYFSDE 207
>gi|168021153|ref|XP_001763106.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162685589|gb|EDQ71983.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 172
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 79/158 (50%), Positives = 114/158 (72%), Gaps = 5/158 (3%)
Query: 63 GFSLGVDLGLSRTGLALS-KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKS 121
G ++GVDLG ++TGLA+S G+ RPLTV++ RG+KL +L++ + DEF++GLPK+
Sbjct: 13 GHTVGVDLGDAKTGLAISLGGYAPRPLTVVRQRGDKLLETILQVGIPQRADEFVVGLPKA 72
Query: 122 WDGSETPQSNKVRSVAGRLA----VRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
WDG ++ Q+NK RS AGRLA V A RGWRVYL DE+ TS +A+D MI+MG ++ +R
Sbjct: 73 WDGKDSDQANKCRSFAGRLANIAGVVAYCRGWRVYLQDEYGTSQDALDYMIDMGSNRRSR 132
Query: 178 QTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKL 215
+ + DAYAA LL RYF G G ++V+PK +++Q+ L
Sbjct: 133 KEQLDAYAATALLCRYFESGGSGAQMVVPKALNVQQAL 170
>gi|302768497|ref|XP_002967668.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii]
gi|300164406|gb|EFJ31015.1| hypothetical protein SELMODRAFT_408862 [Selaginella moellendorffii]
Length = 186
Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust.
Identities = 78/170 (45%), Positives = 110/170 (64%), Gaps = 16/170 (9%)
Query: 47 FLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALS-KGFCVRPLTVLKLRGEKLELQLLEI 105
LPNA +K + S+G+D GL RTG+A++ G RPL+V KL+G+ L +LL +
Sbjct: 8 ILPNARLKKSLETRKLRRSVGIDYGLERTGIAVTFCGLAPRPLSVSKLKGDNLIKKLLSV 67
Query: 106 AQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVD 165
A++E+ DEFI+GLP+SWD ET QSNK R+ AGRLA +AE G RV+L DE+ TS +A++
Sbjct: 68 AKKEKADEFIVGLPRSWDAQETEQSNKTRTFAGRLAQYSAEEGVRVFLHDEYMTSEDALE 127
Query: 166 RMINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKL 215
MI G +K +R+ + DAYAAV++ +PKR +LQE L
Sbjct: 128 FMIYRGSTKKSRRLEVDAYAAVLM---------------VPKRGELQETL 162
>gi|357451419|ref|XP_003595986.1| hypothetical protein MTR_2g064680 [Medicago truncatula]
gi|355485034|gb|AES66237.1| hypothetical protein MTR_2g064680 [Medicago truncatula]
gi|388514525|gb|AFK45324.1| unknown [Medicago truncatula]
Length = 91
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 48/72 (66%), Positives = 60/72 (83%), Gaps = 1/72 (1%)
Query: 147 RGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLP 206
RGWRVYL DE+ T+ A+DRMINMG+++S +Q K DAYAAV+LLERYFS SGQ TE+V+P
Sbjct: 9 RGWRVYLHDEYGTTNAAIDRMINMGVNRS-QQKKQDAYAAVMLLERYFSTSGQKTELVVP 67
Query: 207 KRVDLQEKLRKG 218
K ++LQ KLR G
Sbjct: 68 KNLELQGKLRSG 79
>gi|357451423|ref|XP_003595988.1| hypothetical protein MTR_2g064700 [Medicago truncatula]
gi|355485036|gb|AES66239.1| hypothetical protein MTR_2g064700 [Medicago truncatula]
Length = 116
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 39/64 (60%), Positives = 47/64 (73%), Gaps = 4/64 (6%)
Query: 28 LNRTRNFGQRIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRP 87
LN T+N + ++EE PNA RRKKD WRGGFSLGVDLG++RTG+ALSKGF RP
Sbjct: 26 LNSTQNLKTPL----TLEELPPNALRRKKDEEWRGGFSLGVDLGMARTGIALSKGFTFRP 81
Query: 88 LTVL 91
LT +
Sbjct: 82 LTYV 85
>gi|374301683|ref|YP_005053322.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis
Bay]
gi|332554619|gb|EGJ51663.1| Holliday junction resolvase [Desulfovibrio africanus str. Walvis
Bay]
Length = 163
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 49/135 (36%), Positives = 77/135 (57%), Gaps = 6/135 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVL-KLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG+D GL R GLAL+ G P L + + L ++ +A E+ + ++GLP +
Sbjct: 32 LGIDFGLKRVGLALTDEGGRMAFPRPALARTSNDALIAEIGRMAAEEKVEAVVLGLPIAM 91
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG ET S +VR++A ++ ++ G +V+L+DE TSAEA R+ G+S + K D
Sbjct: 92 DGEETDLSRQVRNLARKIT---SKTGLKVHLMDERLTSAEAQARLREAGVSSKKMKGKLD 148
Query: 183 AYAAVILLERYFSMS 197
+ AAV++LE Y S
Sbjct: 149 SGAAVLILEAYLGRS 163
>gi|406978484|gb|EKE00444.1| hypothetical protein ACD_22C00022G0002 [uncultured bacterium]
Length = 136
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 73/133 (54%), Gaps = 5/133 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSWDG 124
LG+D G + G A K V PL V+ + + +L ++A + I+GLP ++DG
Sbjct: 6 LGIDYGTNHIGAAFGKNGLVAPLKVISGKDPNTAINELAKLAYENKITSVILGLPLTFDG 65
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
ETPQS K R A L + + V ++E TS EA + +I+ G+S+ R+T D Y
Sbjct: 66 KETPQSLKTRRFAKLLKIYIKK---PVIFINEVNTSNEAEEEIISHGISQKKRRT-ADHY 121
Query: 185 AAVILLERYFSMS 197
+A ++L+RY+ +
Sbjct: 122 SAALILKRYYEQA 134
>gi|452823591|gb|EME30600.1| DNA binding / hydrolase [Galdieria sulphuraria]
Length = 249
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 56/165 (33%), Positives = 89/165 (53%), Gaps = 12/165 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEK---LELQLLEIAQREETDEFII 116
+ G ++GVD G+SR G+A+S GF RPLT +K LE +L EI E + ++
Sbjct: 59 FTGRKAVGVDYGMSRVGVAVSVGFSPRPLTCIKHENNTDLVLE-KLSEIVSSERAEIIVV 117
Query: 117 GLPKSWD-GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
GLP S + Q+ K + A +A R +++ VYL DE TS A +R+ G+S
Sbjct: 118 GLPLSARVECSSGQTQKAMNFAQLVANRFSKQ--EVYLCDEKYTSIVANERLAERGISLV 175
Query: 176 ARQTKTDAYAAVILLERYF-----SMSGQGTEIVLPKRVDLQEKL 215
+ D+ AAV+LLER+F SG ++V P+ ++++ +
Sbjct: 176 NSKELIDSEAAVVLLERFFGGWSSDKSGLYLKLVKPQHENIEQDV 220
>gi|397611360|gb|EJK61293.1| hypothetical protein THAOC_18252 [Thalassiosira oceanica]
Length = 293
Score = 70.9 bits (172), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 51/150 (34%), Positives = 78/150 (52%), Gaps = 12/150 (8%)
Query: 65 SLGVDLGLSRTGLALS-KGFCVRPLTVLK-LRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+LGVD GL+RTG+A++ G+ RPL +L L +L L++ Q E+ ++GLP +
Sbjct: 69 TLGVDYGLTRTGVAVTFGGYRPRPLAILSGLNNTELATALVDYVQSEQATNIVLGLPLNK 128
Query: 123 DGSETPQSNKVRSVAGRLAVRAAER---GWRVYLLDEHRTSAEAVDRMINMGLSKSAR-- 177
+G+ + QS R L R G + L DE TS EA R+ ++++ R
Sbjct: 129 NGTVSKQSLITRDFGRALLSEVRSRCGPGIPIQLWDERYTSKEAASRITAEAMARNQRIP 188
Query: 178 -----QTKTDAYAAVILLERYFSMSGQGTE 202
T+ DA AA I+LE Y+ GQ +E
Sbjct: 189 SASDLATELDAEAACIILEDYYKELGQDSE 218
>gi|436843044|ref|YP_007327422.1| putative Holliday junction resolvase [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
gi|432171950|emb|CCO25323.1| putative Holliday junction resolvase [Desulfovibrio hydrothermalis
AM13 = DSM 14728]
Length = 135
Score = 70.1 bits (170), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 72/134 (53%), Gaps = 6/134 (4%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVL-KLRGEKLELQLLEIAQREETDEFIIGLPKS 121
+LG+D G R GLA++ G P V+ + + +LLEI ++E+ DE IIGLP S
Sbjct: 3 ALGIDFGTKRVGLAMTDPGGILAFPFKVIQRTTRNAMFTELLEIIEKEKVDEIIIGLPLS 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG +T + +VR+ A + R ++L+DE +S A + + GL R+
Sbjct: 63 LDGEDTLTTRQVRNFAASMERRV---DLPIHLVDERLSSVAAEEELKEAGLWDRKRKKNL 119
Query: 182 DAYAAVILLERYFS 195
D+ AA I+LE + +
Sbjct: 120 DSQAAKIILETWLN 133
>gi|227495467|ref|ZP_03925783.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM
15436]
gi|226831014|gb|EEH63397.1| possible Holliday junction resolvase [Actinomyces coleocanis DSM
15436]
Length = 155
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 47/136 (34%), Positives = 71/136 (52%), Gaps = 5/136 (3%)
Query: 59 LWRGGFSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFI 115
++R G +GVD G SR G+A++ G P T L+ + L +LL + ++ E +
Sbjct: 1 MFRSGVRIGVDYGKSRIGVAVTDPSGKISFPHTTLQFSPYGVHLDELLNLIVEKQAIEVV 60
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
IG+P +G E + VR A LAV + RV L+DE T+ +A + MG+
Sbjct: 61 IGMPVHLNGKEGSSAEFVRDFANELAVEIPD--IRVCLMDERLTTNQAHAGLSEMGVDNR 118
Query: 176 ARQTKTDAYAAVILLE 191
AR+ K D AA I+LE
Sbjct: 119 ARKNKIDQLAASIILE 134
>gi|219112769|ref|XP_002178136.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217411021|gb|EEC50950.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 190
Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 47/145 (32%), Positives = 76/145 (52%), Gaps = 5/145 (3%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLK-LRGEKLELQLLEIAQREETDEFIIGLPK 120
G S+GVD GL RTG+A++ G+ +PLT+LK L ++ ++ + E+ ++GLP
Sbjct: 17 GVKSIGVDYGLVRTGVAVTVGYDPKPLTILKDLNATEVCDAVIRCVRLEQASRIVVGLPL 76
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAER---GWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
+G+ Q+N LA ++ + G +V L DE TS A R + +
Sbjct: 77 HKNGTIAEQTNLTLVFVAELAQKSLQELGPGVKVELFDERYTSKAAAARAHSRNPHQPLY 136
Query: 178 QTKTDAYAAVILLERYFSMSGQGTE 202
T DA AA I+LE Y++ +G G +
Sbjct: 137 GT-LDADAACIILENYYNDNGLGAQ 160
>gi|431797246|ref|YP_007224150.1| RNAse H-fold protein YqgF [Echinicola vietnamensis DSM 17526]
gi|430788011|gb|AGA78140.1| RNAse H-fold protein YqgF [Echinicola vietnamensis DSM 17526]
Length = 137
Score = 67.8 bits (164), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +DLG RTGLA++ + + +R L+ L + Q+E + ++G PKS
Sbjct: 2 GRVLAIDLGTKRTGLAVTDILKITANPLETIRTMDLDKYLKDYVQKEPVEAIVVGYPKSM 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT- 181
DGS+T + + RL+ A ++ L+DE TS A+ MI MG K R+ K
Sbjct: 62 DGSDTNMTQPAIRLKDRLS--KAYPDLKIVLVDERFTSKMAMQSMITMGSKKKDRREKAG 119
Query: 182 --DAYAAVILLERYF 194
D +A I+L+ Y
Sbjct: 120 NLDKISAAIILQTYL 134
>gi|390945326|ref|YP_006409087.1| RNAse H-fold protein YqgF [Belliella baltica DSM 15883]
gi|390418754|gb|AFL86332.1| RNAse H-fold protein YqgF [Belliella baltica DSM 15883]
Length = 137
Score = 67.4 bits (163), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 70/135 (51%), Gaps = 5/135 (3%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G + +DLG RTGLA++ + + + KL L + ++EE + +IG PKS
Sbjct: 2 GRVIAIDLGTKRTGLAVTDVLKITANPLETVETSKLADYLTQYFKKEEVETIVIGYPKSL 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT- 181
+GS+ + +V S+ RL E+ ++ L+DE TS A+ MI MG K R+ K
Sbjct: 62 NGSDNEMTPRVISLKDRLGKLFPEK--KIILIDERYTSKMAMQSMIAMGSKKKDRKEKAG 119
Query: 182 --DAYAAVILLERYF 194
D +A I+L+ Y
Sbjct: 120 NLDKISAAIILQTYL 134
>gi|383765893|ref|YP_005444874.1| putative Holliday junction resolvase [Phycisphaera mikurensis NBRC
102666]
gi|381386161|dbj|BAM02977.1| putative Holliday junction resolvase [Phycisphaera mikurensis NBRC
102666]
Length = 155
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 49/133 (36%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLAL---SKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
L +DLG RTGLAL + G V+ G + +L I +RE D ++GLP
Sbjct: 24 LAIDLGNKRTGLALGDDATGIASPLPAVVAPPGPERWTRLARIVERETPDALVLGLPLHM 83
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGS R A A G V+L+DE R+S EA + M GL+ ++T+ D
Sbjct: 84 DGS---AGKAARRARAFAAEAAERFGVPVHLVDERRSSLEADEAMGRSGLTHKQKKTRRD 140
Query: 183 AYAAVILLERYFS 195
AAV+LL+RYF+
Sbjct: 141 GLAAVMLLQRYFA 153
>gi|119716635|ref|YP_923600.1| Holliday junction resolvase-like protein [Nocardioides sp. JS614]
gi|167012741|sp|A1SJC8.1|RUVX_NOCSJ RecName: Full=Putative Holliday junction resolvase
gi|119537296|gb|ABL81913.1| Holliday junction resolvase YqgF [Nocardioides sp. JS614]
Length = 156
Score = 67.0 bits (162), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 73/141 (51%), Gaps = 8/141 (5%)
Query: 60 WRGGFSLGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEKLELQLLEIAQREETD---E 113
R G +G+D G +R G+A S GF P+ TV + +G+ + + A+ +E E
Sbjct: 1 MRAGVRIGIDPGDARIGVARSDPSGFLATPVETVRRGKGDLARIGRILAAEEDEGATVLE 60
Query: 114 FIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLS 173
++GLP+S G E P + KVR AGRLA R A V L+DE T+ A + + G +
Sbjct: 61 VVVGLPRSLSGREGPAAAKVREFAGRLAARVAP--VPVRLVDERMTTVSAEAMLRDQGRT 118
Query: 174 KSARQTKTDAYAAVILLERYF 194
R+ D AAV++L+
Sbjct: 119 GGKRRAVVDQAAAVLILQHAL 139
>gi|308812223|ref|XP_003083419.1| Beta-fructofuranosidase (invertase) (ISS) [Ostreococcus tauri]
gi|116055299|emb|CAL57695.1| Beta-fructofuranosidase (invertase) (ISS) [Ostreococcus tauri]
Length = 224
Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 55/162 (33%), Positives = 73/162 (45%), Gaps = 26/162 (16%)
Query: 66 LGVDLGLSRTGLALS-KGFCVRPLTVLKLRGEKL----ELQLLEIAQREETDEFIIGLPK 120
LGVD G R GLA+S G RPL ++ RG ++ E A RE D ++G+PK
Sbjct: 66 LGVDYGARRIGLAVSDSGMAPRPLRTMEHRGSATTGASAREVAETAARECCDRIVVGVPK 125
Query: 121 ------SWDGSETPQSNKVRSVAGRLAVRAAE----------RGWRVYLLDEHRTSAEAV 164
+ ++ + R A A+ R VY LDE RTS EA
Sbjct: 126 QPGRGMKDRRGRGRGAVRMDLICARFAGEVADALARSEDANARAVTVYTLDESRTSVEAA 185
Query: 165 DRMINMGLSKSARQTKTDAYAAVILLERYFSMSGQGTEIVLP 206
+RM G + S DA +A ILLERYF S ++V P
Sbjct: 186 ERMEASGSTNS-----VDAASAAILLERYFDGSYGEPKVVKP 222
>gi|357451417|ref|XP_003595985.1| hypothetical protein MTR_2g064670 [Medicago truncatula]
gi|355485033|gb|AES66236.1| hypothetical protein MTR_2g064670 [Medicago truncatula]
Length = 83
Score = 66.6 bits (161), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 47/71 (66%), Gaps = 2/71 (2%)
Query: 13 PLLIFPKF--NDNRKFHLNRTRNFGQRIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDL 70
PL +F F +++ K N Q + ++EE PNA RRKKD+ WRGGFSLGVDL
Sbjct: 13 PLKLFHSFQPSNHAKIQSLSKLNSTQSLKTALTLEELPPNALRRKKDAEWRGGFSLGVDL 72
Query: 71 GLSRTGLALSK 81
G++RTG+AL+K
Sbjct: 73 GMARTGIALNK 83
>gi|406978162|gb|EKE00181.1| hypothetical protein ACD_22C00081G0004 [uncultured bacterium]
Length = 141
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSWDG 124
LG+D G + GLA + V P+ + + L + ++L++ + + + ++GLP S+D
Sbjct: 10 LGIDYGETNIGLAFGRNRLVSPIKTVSGKNTPLAINEILKVVIQNKVGKIVMGLPLSYDK 69
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
E QS KVR A L +R + +DE+ ++ E+++ I + K AR+ D Y
Sbjct: 70 KENSQSKKVRQFAKLLKIRLK---LPLEYVDEYGSTIESLEETIQQHVPKKARRL-IDHY 125
Query: 185 AAVILLERYFSMSG 198
+A ILL +Y+ S
Sbjct: 126 SAAILLRKYYDKSN 139
>gi|406972269|gb|EKD96086.1| hypothetical protein ACD_24C00193G0002 [uncultured bacterium]
Length = 146
Score = 66.2 bits (160), Expect = 9e-09, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 78/144 (54%), Gaps = 10/144 (6%)
Query: 54 RKKDSLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL-QLLEIAQREETD 112
+KK +L + LG+D G + G+AL K V PL ++ + + + QL+ +A + +
Sbjct: 3 KKKQTLADKSY-LGIDYGTTNIGVALGKNGFVTPLKIISGKSDNTAISQLIRVALENKAE 61
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGL 172
F++GLP + +G ET QS K R A L + + + V +E ++ EA +M +
Sbjct: 62 AFVMGLPLTAEGKETAQSLKNRKFAKLLKILSKK---PVIFTNEEDSTQEAFQ---SMTI 115
Query: 173 SKSARQTK--TDAYAAVILLERYF 194
KS R++K +D AA I+L R+F
Sbjct: 116 QKSTRKSKAYSDDIAAAIILRRFF 139
>gi|317154143|ref|YP_004122191.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
gi|316944394|gb|ADU63445.1| Holliday junction resolvase YqgF [Desulfovibrio aespoeensis Aspo-2]
Length = 138
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALS--KGFCVRP-LTVLKLRGEKLELQLLEIAQREETDEFIIGLPKS 121
+LG+D GL R GLA+S G V P LT+ + + L ++EI ++E + ++GLP S
Sbjct: 3 ALGIDFGLKRVGLAISDRSGILVSPYLTLERTTRDALFEAIIEIIRQESVEAIVVGLPLS 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG +T + + R+ A L R ++L DE TSA+A + + L + R+
Sbjct: 63 MDGEDTLTTRQARNFAQSLGRRT---DLPIHLADERLTSAQAEEELNAADLRGTKRKMAL 119
Query: 182 DAYAAVILLERYF 194
D+ AAVI+L +
Sbjct: 120 DSQAAVIILRTWL 132
>gi|427391880|ref|ZP_18886104.1| RNAse H-fold protein YqgF [Actinobaculum massiliae ACS-171-V-Col2]
gi|425731847|gb|EKU94660.1| RNAse H-fold protein YqgF [Actinobaculum massiliae ACS-171-V-Col2]
Length = 170
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 48/133 (36%), Positives = 72/133 (54%), Gaps = 5/133 (3%)
Query: 61 RGGFSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGL 118
R G LGVD+G +RTGLA S +G P L G L ++ +A+RE+ E I+GL
Sbjct: 2 RRGIRLGVDVGKTRTGLAKSNPEGTLAVPERTLFADGSDLR-RVARMARREQVLEVIVGL 60
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P++ DG+E + R AG+LA + A V L+DE ++ A ++ GLS +
Sbjct: 61 PRNMDGTEGASARYARDWAGKLARKIAP--IPVRLVDERLSTVSAHAQLAEAGLSARKHR 118
Query: 179 TKTDAYAAVILLE 191
D AAV++L+
Sbjct: 119 AVVDQMAAVVILD 131
>gi|229815210|ref|ZP_04445546.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM
13280]
gi|229809220|gb|EEP44986.1| hypothetical protein COLINT_02256 [Collinsella intestinalis DSM
13280]
Length = 142
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 64 FSLGVDLGLSRTGLALS--KGFCVRPLTVL-KLRGEKLELQLLEIAQREETDEFIIGLPK 120
+L +D+G +RTG+A+S G PL VL E + I + E D + GLP+
Sbjct: 2 VALALDIGGTRTGIAVSDRTGRVAMPLKVLPACEVEGMARSFRMILEDHEPDVLVCGLPQ 61
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ G E PQ+ +R VAGR+ AA G + +DE TS EA + GL++ + K
Sbjct: 62 TMSGEEGPQAEHIREVAGRI---AAATGLPLEFIDERLTSTEAKRILREQGLNEKQMRGK 118
Query: 181 TDAYAAVILLERYFSMSGQ 199
D +A + L+ + G+
Sbjct: 119 VDMISASLFLQAWLDSHGR 137
>gi|412988551|emb|CCO17887.1| predicted protein [Bathycoccus prasinos]
Length = 200
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 52/163 (31%), Positives = 82/163 (50%), Gaps = 33/163 (20%)
Query: 65 SLGVDLGLSRTGLALSK-GFCVRPLTVLKLRGE-KLEL--QLLEIAQREETDEFIIGLPK 120
+LG+D GLS+TGLA+S GF RPL L +G+ ++EL +++++A+RE D +++G P+
Sbjct: 19 ALGIDYGLSKTGLAISSGGFAPRPLESLLCKGKSRVELIREIVDVAERERADVYVVGYPR 78
Query: 121 SWDGSETPQSNKVRSVA---------GRLAVR-----------------AAERGWRVYLL 154
K+R V ++ +R AER V +
Sbjct: 79 QTREELELLEEKIREVTESNAQNKENKKVPIRMHRVCEQFAEALAQVSTTAERKIPVEMY 138
Query: 155 DEHRTSAEAVDRMINMGLSKSARQTKTDAYAAVILLERYFSMS 197
DE TS EA+ + G S ++ K D+ AA +LLERYF +
Sbjct: 139 DESFTSDEAMS--MKRG-SLASDDPKLDSIAAALLLERYFEQT 178
>gi|83590476|ref|YP_430485.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
39073]
gi|146325578|sp|Q2RHZ7.1|RUVX_MOOTA RecName: Full=Putative Holliday junction resolvase
gi|83573390|gb|ABC19942.1| Holliday junction resolvase YqgF [Moorella thermoacetica ATCC
39073]
Length = 140
Score = 65.5 bits (158), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 72/137 (52%), Gaps = 6/137 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKSW 122
+G+D+G G+ALS G+ + LT ++ R +L L E+ +R +E ++GLP++
Sbjct: 4 MGLDVGTKTIGVALSDPLGWTAQGLTTIRRRNLAADLAALKELVRRYGVEELVVGLPRNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+GS PQ+ VR+ A L AE G V+ DE T+ A ++ LS+ R+ D
Sbjct: 64 NGSLGPQAEAVRAFARHL---QAEVGLPVHFFDERLTTVAAGRVLLEADLSRRRRRQVID 120
Query: 183 AYAAVILLERYFSMSGQ 199
AA +L+ Y GQ
Sbjct: 121 QVAATYILQGYLDRLGQ 137
>gi|400405856|ref|YP_006588715.1| endonuclease [secondary endosymbiont of Ctenarytaina eucalypti]
gi|400364219|gb|AFP85287.1| putative endonuclease involved in recombination [secondary
endosymbiont of Ctenarytaina eucalypti]
Length = 141
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGL 118
G + D G R GLA+ + RPL VL R +E E D ++GL
Sbjct: 4 AGIIMSFDFGTQRIGLAIGQYVTCSARPLEVLNARDGMPHWPKIETLLNEWRPDRVVVGL 63
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P S DGSE P +++ R+ A RL R V L DE ++ EA + G ++ +
Sbjct: 64 PLSIDGSEQPITSRARTFANRLQSRFKV---HVVLHDERLSTVEARSVLFARGGYRALEK 120
Query: 179 TKTDAYAAVILLERYF 194
+K DA+AAVI+LE +
Sbjct: 121 SKVDAWAAVIILESWL 136
>gi|312131456|ref|YP_003998796.1| holliday junction resolvase yqgf [Leadbetterella byssophila DSM
17132]
gi|311908002|gb|ADQ18443.1| Holliday junction resolvase YqgF [Leadbetterella byssophila DSM
17132]
Length = 140
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 69/138 (50%), Gaps = 4/138 (2%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +D G RTGLA++ + + ++ ++L L Q EE D ++GLP S
Sbjct: 2 GRILAIDYGKVRTGLAVTDPLQIIATALETVKTDQLINYLERYIQNEEVDALVLGLPLSL 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
+TP + VRS L + + ++ +DE TS A D +I+ G+ K R+ K
Sbjct: 62 RSEDTPTTTMVRSFGEVLKDKFPD--LPLHFIDERFTSKMASDTLISSGVKKKDRKVKGN 119
Query: 181 TDAYAAVILLERYFSMSG 198
TD +AVI+L+ Y G
Sbjct: 120 TDLISAVIILQSYLQSKG 137
>gi|86157658|ref|YP_464443.1| Holliday junction resolvase-like protein [Anaeromyxobacter
dehalogenans 2CP-C]
gi|146325549|sp|Q2IQC1.1|RUVX_ANADE RecName: Full=Putative Holliday junction resolvase
gi|85774169|gb|ABC81006.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
2CP-C]
Length = 137
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 71/133 (53%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKS 121
+LGVDLG R GLA++ R +T + RGE +L + E+A+ E ++GLP +
Sbjct: 3 TLGVDLGRVRIGLAVADEILRTARAVTTVVRRGEAEDLAAIAEVARDYEVTRAVVGLPLN 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG+E P + R A RL A G V L DE +S EA R+ G+S ++ +
Sbjct: 63 MDGTEGPSARLARGFAPRL---EAALGVPVELFDERLSSFEAESRLRARGVSARDQRGQV 119
Query: 182 DAYAAVILLERYF 194
DA AA ++L+ +
Sbjct: 120 DAEAAAVILQGWL 132
>gi|156932611|ref|YP_001436527.1| Holliday junction resolvase-like protein [Cronobacter sakazakii
ATCC BAA-894]
gi|424800983|ref|ZP_18226525.1| Putative Holliday junction resolvase [Cronobacter sakazakii 696]
gi|424800987|ref|ZP_18226529.1| Putative Holliday junction resolvase [Cronobacter sakazakii 696]
gi|167012722|sp|A7MJR8.1|RUVX_ENTS8 RecName: Full=Putative Holliday junction resolvase
gi|156530865|gb|ABU75691.1| hypothetical protein ESA_00393 [Cronobacter sakazakii ATCC BAA-894]
gi|423236704|emb|CCK08395.1| Putative Holliday junction resolvase [Cronobacter sakazakii 696]
gi|423236708|emb|CCK08399.1| Putative Holliday junction resolvase [Cronobacter sakazakii 696]
Length = 138
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPLT +K + + L+E +E + D+ I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRVTATARPLTAIKAQNGNPDWTLIEKLLKEWQPDDVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A RL R G +V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARTFANRLHGRF---GIKVTLHDERLSTVEARAGLFERGGFRALNKG 119
Query: 180 KTDAYAAVILLERYFSMSG 198
D+ +AV++LE YF G
Sbjct: 120 SVDSASAVVILESYFEQHG 138
>gi|389839667|ref|YP_006341751.1| holliday junction resolvase protein [Cronobacter sakazakii ES15]
gi|417789846|ref|ZP_12437454.1| Holliday junction resolvase-like protein [Cronobacter sakazakii
E899]
gi|449306935|ref|YP_007439291.1| Holliday junction resolvase-like protein [Cronobacter sakazakii
SP291]
gi|333956045|gb|EGL73740.1| Holliday junction resolvase-like protein [Cronobacter sakazakii
E899]
gi|387850143|gb|AFJ98240.1| putative holliday junction resolvase protein [Cronobacter sakazakii
ES15]
gi|449096968|gb|AGE85002.1| Holliday junction resolvase-like protein [Cronobacter sakazakii
SP291]
Length = 138
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPLT +K + + L+E +E + D+ I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRVTATARPLTAIKAQNGNPDWTLIEKLLKEWQPDDVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A RL R G +V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARTFANRLHGRF---GIKVTLHDERLSTVEARAGIFERGGFRALNKG 119
Query: 180 KTDAYAAVILLERYFSMSG 198
D+ +AV++LE YF G
Sbjct: 120 SVDSASAVVILESYFEQHG 138
>gi|260893291|ref|YP_003239388.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4]
gi|260865432|gb|ACX52538.1| Holliday junction resolvase YqgF [Ammonifex degensii KC4]
Length = 146
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 72/134 (53%), Gaps = 9/134 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLE--LQLLEIAQREETDEFIIGLPKS 121
L +D+G G+A+S G + L VL RGE+ E +LE+A+R E +E +IGLP++
Sbjct: 4 LALDVGDKTIGVAVSDPFGLTAQGLKVLH-RGEEAEDVQHVLELARRYEVEEVVIGLPRT 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
G PQ+ KV R A++G ++ DE T+ EA ++ +S+ R+
Sbjct: 63 LAGEIGPQAQKVL----RFGELLAQQGLKIIYWDERFTTKEAEKVLLAADVSRKKRRRVK 118
Query: 182 DAYAAVILLERYFS 195
D AAV+LLE Y
Sbjct: 119 DILAAVLLLEAYLE 132
>gi|429119936|ref|ZP_19180634.1| Putative Holliday junction resolvase [Cronobacter sakazakii 680]
gi|426325622|emb|CCK11371.1| Putative Holliday junction resolvase [Cronobacter sakazakii 680]
Length = 138
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPLT +K + + L+E +E + D+ I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRVTATARPLTAIKAQNGNPDWTLIERLLKEWQPDDVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A RL R G +V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARTFANRLHGRF---GIKVTLHDERLSTVEARAGLFERGGFRALNKG 119
Query: 180 KTDAYAAVILLERYFSMSG 198
D+ +AV++LE YF G
Sbjct: 120 SVDSASAVVILESYFEQHG 138
>gi|310778165|ref|YP_003966498.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926]
gi|309747488|gb|ADO82150.1| Holliday junction resolvase YqgF [Ilyobacter polytropus DSM 2926]
Length = 139
Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 69/135 (51%), Gaps = 7/135 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
L +D+G R G+A S G PL V+ K ++ E+ ++E T ++G+PKS D
Sbjct: 6 LALDVGDVRIGVARSDAMGMFAHPLEVIDRTKTKAVKRVQELCRQENTKSIVVGIPKSLD 65
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--T 181
G E Q+ KVR +L + G + +DE R S + +RM+N +K AR +
Sbjct: 66 GQEKRQAEKVREFIEKL--NKSIEGLEIIEIDE-RLSTISAERMLNETTNKDARGKRKVV 122
Query: 182 DAYAAVILLERYFSM 196
D AA I+L+ Y M
Sbjct: 123 DKIAAAIILQTYLDM 137
>gi|429082821|ref|ZP_19145877.1| Putative Holliday junction resolvase (EC 3.1.-.-) [Cronobacter
condimenti 1330]
gi|426548347|emb|CCJ71918.1| Putative Holliday junction resolvase (EC 3.1.-.-) [Cronobacter
condimenti 1330]
Length = 138
Score = 63.9 bits (154), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPLT LK + + L+E +E + D+ I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRVTATARPLTALKAQNGNPDWTLIERLLKEWQPDDVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A RL R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARTFANRLHGRF---GIHVTLHDERLSTVEARAGLFERGGFRALDKG 119
Query: 180 KTDAYAAVILLERYFSMSG 198
D+ +AV++LE YF G
Sbjct: 120 SVDSASAVVILESYFEQHG 138
>gi|257440576|ref|ZP_05616331.1| putative Holliday junction resolvase [Faecalibacterium prausnitzii
A2-165]
gi|257196899|gb|EEU95183.1| RNAse H domain protein, YqgF family [Faecalibacterium prausnitzii
A2-165]
Length = 143
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 73/135 (54%), Gaps = 9/135 (6%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPLT---VLKLRGEKLELQLLEIAQREETDEFIIGLPK 120
L VD G SRTGLA+ F P+T LK R K+ ++ IAQ ++ + ++GLP
Sbjct: 4 LAVDYGASRTGLAVCDPTEFLTTPITPQITLKAR-PKVAAEVCRIAQEQKAELIVVGLPL 62
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E ++ K R + L + + G V + DE +++ EA D + +G + R+
Sbjct: 63 NMDGTEGERAEKSRKLGKTLQIWS---GLPVRMWDERQSTCEAADILDEVGTFGAHRKAI 119
Query: 181 TDAYAAVILLERYFS 195
D+ +A ++LE Y +
Sbjct: 120 LDSVSATVILEDYLA 134
>gi|417228455|ref|ZP_12030213.1| RNAse H domain protein, YqgF family [Escherichia coli 5.0959]
gi|386207790|gb|EII12295.1| RNAse H domain protein, YqgF family [Escherichia coli 5.0959]
Length = 148
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYFSMSGQG 200
K D+ +AVI+LE YF +G
Sbjct: 120 KVDSASAVIILESYFEQGYEG 140
>gi|449017601|dbj|BAM81003.1| hypothetical protein, conserved [Cyanidioschyzon merolae strain
10D]
Length = 222
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 54/187 (28%), Positives = 87/187 (46%), Gaps = 32/187 (17%)
Query: 47 FLPNATRRKKDSLWR-GGFSLGVDLGLSRTGLALSKGFCVRPLTVL-------------- 91
F+P A +++ + G SLG+D G R G+A+S GF RPL L
Sbjct: 15 FIPGAILLSAENIAQIGRRSLGIDYGFRRVGVAVSVGFAPRPLGCLPNAHRVATGPQNKV 74
Query: 92 KLRG-------------EKLELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAG 138
K+ G ++L +L++A +E D+ ++GLP DG E+ QS + R A
Sbjct: 75 KIEGNRNRGQGRKSTVPDRLIEDVLDLALQEAVDQIVVGLPLHSDGLESDQSRETRVFAE 134
Query: 139 RLAVRAAERGWRVYLLDEHRTSAEAVDRM-INMGLSKSARQTKTDAYAAVILLERYFSMS 197
+LA VYL DE ++ EA + N S+ + + DA +A ++L ++
Sbjct: 135 KLAKATV---LPVYLWDECFSTQEARAVLEANAIRSRRRIERQIDAESACVILREFYEYR 191
Query: 198 GQGTEIV 204
G E+V
Sbjct: 192 GACAELV 198
>gi|410030594|ref|ZP_11280424.1| RNAse H-fold protein YqgF [Marinilabilia sp. AK2]
Length = 137
Score = 63.5 bits (153), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +DLG RTG+A++ + + + KL L Q+EE D ++G PK+
Sbjct: 2 GRILAIDLGTKRTGIAVTDMLQIVANPLETIETSKLIDYLTSYFQKEEVDTIVLGYPKNL 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT- 181
DG + +V S+ RL+ ++ ++ L+DE TS A+ MI MG K R+ K
Sbjct: 62 DGKANEMTPRVISLKDRLSKLFPDK--KLVLIDERFTSKMAMQSMIAMGSKKKDRKEKAG 119
Query: 182 --DAYAAVILLERYF 194
D +A I+L+ Y
Sbjct: 120 NLDKVSAAIILQSYL 134
>gi|350271219|ref|YP_004882527.1| putative Holliday junction resolvase [Oscillibacter valericigenes
Sjm18-20]
gi|348596061|dbj|BAL00022.1| putative Holliday junction resolvase [Oscillibacter valericigenes
Sjm18-20]
Length = 138
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 71/133 (53%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLK-LRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + TG+A+S GF TV+ R E++ ++ +++ +E ++G PK+
Sbjct: 4 MAIDYGDAHTGIAISDPTGFMAGTTTVINAYRPEQVAEEVKKLSAEYAVEELVLGYPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGS P++ K ++A L G V L DE RT+ +A ++N G + R+ D
Sbjct: 64 DGSLGPRAEKAEAMAALLRETV---GLPVILWDERRTTIDAHRILLNNGQNAKKRKKTVD 120
Query: 183 AYAAVILLERYFS 195
A AA ++LE Y +
Sbjct: 121 AVAAALILEGYLT 133
>gi|256821447|ref|YP_003145410.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069]
gi|256794986|gb|ACV25642.1| Holliday junction resolvase YqgF [Kangiella koreensis DSM 16069]
Length = 145
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 45/132 (34%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLA--LSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L D G R G+A + + LTVL + ++ + +L+E RE + F++GLP +
Sbjct: 11 LCFDFGEKRLGVATGVRTQMSSQALTVLAVTNDQPDWKLIENLIREWNVEAFVVGLPLNM 70
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE + K R A RL R G +L DE +SAE D + +G K +Q D
Sbjct: 71 DDSEQELTQKARKFANRLHGRF---GLPTHLHDERLSSAEVKDYLYEIGGYKKLKQNPID 127
Query: 183 AYAAVILLERYF 194
AYAA ++L+ +F
Sbjct: 128 AYAAELILKSFF 139
>gi|227888504|ref|ZP_04006309.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972]
gi|386640439|ref|YP_006107237.1| putative holliday junction resolvase [Escherichia coli ABU 83972]
gi|432413074|ref|ZP_19655733.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE39]
gi|432467108|ref|ZP_19709193.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE205]
gi|432496967|ref|ZP_19738762.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE214]
gi|432581962|ref|ZP_19818376.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE57]
gi|433074151|ref|ZP_20260796.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE129]
gi|433121488|ref|ZP_20307152.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE157]
gi|433184624|ref|ZP_20368864.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE85]
gi|227834773|gb|EEJ45239.1| crossover junction endodeoxyribonuclease [Escherichia coli 83972]
gi|307554931|gb|ADN47706.1| putative holliday junction resolvase [Escherichia coli ABU 83972]
gi|430934249|gb|ELC54622.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE39]
gi|430992353|gb|ELD08726.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE205]
gi|431022660|gb|ELD35921.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE214]
gi|431122244|gb|ELE25113.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE57]
gi|431585312|gb|ELI57264.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE129]
gi|431640779|gb|ELJ08534.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE157]
gi|431704225|gb|ELJ68857.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE85]
Length = 138
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ ++
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKS 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|189501335|ref|YP_001960805.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1]
gi|226725499|sp|B3EPT4.1|RUVX_CHLPB RecName: Full=Putative Holliday junction resolvase
gi|189496776|gb|ACE05324.1| Holliday junction resolvase YqgF [Chlorobium phaeobacteroides BS1]
Length = 144
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 4/135 (2%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTGLA + FC V EK+ + Q ++ I+G P + DG+
Sbjct: 10 LAIDYGKKRTGLAKTDPFCSFAQPVGTFPPEKIITIIKSFLQENSVEKIIVGYPLNSDGT 69
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+ P + + L+ AA V +DEH +S +A +I GLS+ RQ K D+
Sbjct: 70 KNPMTGIIDGFIEELS--AAFPDIPVEPIDEHGSSKQAGKVLIESGLSRKKRQRKGRLDS 127
Query: 184 YAAVILLERYFSMSG 198
AA +LL+ Y +G
Sbjct: 128 AAACLLLQHYLENTG 142
>gi|226226072|ref|YP_002760178.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27]
gi|226089263|dbj|BAH37708.1| putative Holliday junction resolvase [Gemmatimonas aurantiaca T-27]
Length = 168
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 52/143 (36%), Positives = 70/143 (48%), Gaps = 9/143 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREE---TDEFIIGLPK 120
L VD G R GLA+S G P V+ R K + EI ++ E +I GLP
Sbjct: 9 LAVDWGDKRIGLAVSDELGMLASPAGVIARRAGK-RPPIAEIMRQAEALGVSGYIFGLPL 67
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
G ET +S +VR VAG+LA R + V L+DE T++ A+ + G S R+
Sbjct: 68 DPGGDETDRSREVREVAGKLATR---QPLPVRLVDERFTTSAALRSIREQGGSTRGRKGD 124
Query: 181 TDAYAAVILLERYFSMSGQGTEI 203
DA AA +LLE S QG +
Sbjct: 125 VDALAACVLLEGVLRASSQGVTV 147
>gi|378956714|ref|YP_005214201.1| hypothetical protein SPUL_3099 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|438125946|ref|ZP_20872787.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Pullorum str. ATCC 9120]
gi|357207325|gb|AET55371.1| hypothetical protein SPUL_3099 [Salmonella enterica subsp. enterica
serovar Gallinarum/pullorum str. RKS5078]
gi|434942481|gb|ELL48762.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Pullorum str. ATCC 9120]
Length = 138
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 10/134 (7%)
Query: 66 LGVDLGLSRTGLALSKGFCV----RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
L D G G+A+ G C+ RPL +K + + L+E +E + DE I+GLP
Sbjct: 6 LAFDFGTKSIGVAI--GQCITGTARPLPAIKAQDGTPDWMLIERLLKEWQPDEIIVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ + K
Sbjct: 64 NMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKGK 120
Query: 181 TDAYAAVILLERYF 194
D+ +AVI+LE YF
Sbjct: 121 VDSASAVIILESYF 134
>gi|197123036|ref|YP_002134987.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp. K]
gi|226725482|sp|B4UH04.1|RUVX_ANASK RecName: Full=Putative Holliday junction resolvase
gi|196172885|gb|ACG73858.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. K]
Length = 137
Score = 63.2 bits (152), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKS 121
+LGVDLG R GLA++ R +T + R E +L + E+A+ E ++GLP +
Sbjct: 3 TLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLSAIAEVARDYEVTRAVVGLPLN 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG+E P + R A RL A G V L DE +S EA R+ GLS ++ +
Sbjct: 63 MDGTEGPSARLARGFAPRL---EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQV 119
Query: 182 DAYAAVILLERYF 194
DA AA ++L+ +
Sbjct: 120 DAEAAAVILQGWL 132
>gi|373118898|ref|ZP_09533013.1| RNAse H-fold protein YqgF [Lachnospiraceae bacterium 7_1_58FAA]
gi|371665821|gb|EHO30979.1| RNAse H-fold protein YqgF [Lachnospiraceae bacterium 7_1_58FAA]
Length = 139
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+ +D G +RTG+A+S G TV++ R E + + L +A+ DE ++G P++
Sbjct: 4 MAIDYGDARTGVAISDPTGLLAGYTTVIQSRKEGVVAEELARLAKEHSVDELVMGFPRNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P++ R+ A RL G + L DE RT+ EA + G + D
Sbjct: 64 DGTEGPRAELYRAFAARLEEVC---GLKPVLWDERRTTVEAHGILHASGKRMKQHKKTVD 120
Query: 183 AYAAVILLERYFSMSGQG 200
A AA ++LE Y + +G
Sbjct: 121 AVAATLILEGYLTFRRRG 138
>gi|376295907|ref|YP_005167137.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
ND132]
gi|323458468|gb|EGB14333.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
ND132]
Length = 138
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALS--KGFCVRPLTVL-KLRGEKLELQLLEIAQREETDEFIIGLPKS 121
+LG+D GL R GLA+S G V PL L + + L +L EI E + ++GLP +
Sbjct: 3 ALGIDFGLKRVGLAVSDRTGTLVSPLKTLERTTRQALFDELTEIIHDEAIEAVVVGLPLA 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
G +T + + R+ A L R V+L+DE TSA+A + + GL + R+
Sbjct: 63 LSGEDTLTTRQARNFAESLGRRI---DAPVHLMDERLTSAQAEEELNAAGLRGAKRKAAL 119
Query: 182 DAYAAVILLERYF 194
D+ AAV++L +
Sbjct: 120 DSQAAVVILRSWL 132
>gi|331654461|ref|ZP_08355461.1| putative Holliday junction resolvase [Escherichia coli M718]
gi|331047843|gb|EGI19920.1| putative Holliday junction resolvase [Escherichia coli M718]
Length = 138
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|406663843|ref|ZP_11071859.1| Putative Holliday junction resolvase [Cecembia lonarensis LW9]
gi|405551902|gb|EKB47502.1| Putative Holliday junction resolvase [Cecembia lonarensis LW9]
Length = 137
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 69/135 (51%), Gaps = 5/135 (3%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +DLG RTG+A++ + + + KL L E Q+E+ D ++G PK+
Sbjct: 2 GRILAIDLGTKRTGIAVTDTLQLVANPLETVDTSKLIDFLKEYFQKEDVDTIVLGHPKNL 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT- 181
DG + +V S+ RL+ E+ ++ L+DE TS A+ MI MG K R+ K
Sbjct: 62 DGKPNEMTPRVISLKDRLSKIFPEK--KLVLIDERFTSKMAMQSMIEMGSKKKDRKEKAG 119
Query: 182 --DAYAAVILLERYF 194
D +A I+L+ Y
Sbjct: 120 NLDKVSAAIILQSYL 134
>gi|315917895|ref|ZP_07914135.1| DNA integration/recombination/inversion protein [Fusobacterium
gonidiaformans ATCC 25563]
gi|317059431|ref|ZP_07923916.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
3_1_5R]
gi|313685107|gb|EFS21942.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
3_1_5R]
gi|313691770|gb|EFS28605.1| DNA integration/recombination/inversion protein [Fusobacterium
gonidiaformans ATCC 25563]
Length = 139
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 71/134 (52%), Gaps = 5/134 (3%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
L +D+G R G+A S G PL + R K +++E+ ++E T ++G+PKS D
Sbjct: 6 LALDVGDVRIGVAKSDIMGIIASPLETIDRRKMKPVKRIIELCEQENTKSIVVGIPKSLD 65
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-TD 182
GSE Q+ KVR A+++A G ++ +DE T+ A + M + + K D
Sbjct: 66 GSEKRQAEKVRIFIH--ALKSAIPGVEIFEVDERFTTVTADQILTEMNRKGALEKRKVVD 123
Query: 183 AYAAVILLERYFSM 196
AA ++L++Y +M
Sbjct: 124 KVAASLILQQYLNM 137
>gi|218701659|ref|YP_002409288.1| Holliday junction resolvase-like protein [Escherichia coli IAI39]
gi|226725517|sp|B7NI12.1|RUVX_ECO7I RecName: Full=Putative Holliday junction resolvase
gi|218371645|emb|CAR19484.1| Holliday junction resolvase [Escherichia coli IAI39]
Length = 138
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GIEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|395228467|ref|ZP_10406790.1| putative Holliday junction resolvase [Citrobacter sp. A1]
gi|424731912|ref|ZP_18160493.1| holliday junction resolvase [Citrobacter sp. L17]
gi|394718116|gb|EJF23760.1| putative Holliday junction resolvase [Citrobacter sp. A1]
gi|422893540|gb|EKU33387.1| holliday junction resolvase [Citrobacter sp. L17]
Length = 139
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 4 GTLLSFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 64 LNMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFEQGGYRALNKG 120
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 121 KVDSASAVIILESYF 135
>gi|24114204|ref|NP_708714.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str.
301]
gi|30064265|ref|NP_838436.1| Holliday junction resolvase-like protein [Shigella flexneri 2a str.
2457T]
gi|74313506|ref|YP_311925.1| Holliday junction resolvase-like protein [Shigella sonnei Ss046]
gi|82545428|ref|YP_409375.1| Holliday junction resolvase-like protein [Shigella boydii Sb227]
gi|110806857|ref|YP_690377.1| Holliday junction resolvase-like protein [Shigella flexneri 5 str.
8401]
gi|157158748|ref|YP_001464301.1| Holliday junction resolvase-like protein [Escherichia coli E24377A]
gi|170681746|ref|YP_001745110.1| Holliday junction resolvase-like protein [Escherichia coli SMS-3-5]
gi|187731869|ref|YP_001881722.1| Holliday junction resolvase-like protein [Shigella boydii CDC
3083-94]
gi|191167958|ref|ZP_03029761.1| putative Holliday junction resolvase [Escherichia coli B7A]
gi|193063467|ref|ZP_03044556.1| putative Holliday junction resolvase [Escherichia coli E22]
gi|193067378|ref|ZP_03048346.1| putative Holliday junction resolvase [Escherichia coli E110019]
gi|194426343|ref|ZP_03058898.1| putative Holliday junction resolvase [Escherichia coli B171]
gi|194431639|ref|ZP_03063930.1| putative Holliday junction resolvase [Shigella dysenteriae 1012]
gi|194436895|ref|ZP_03068995.1| putative Holliday junction resolvase [Escherichia coli 101-1]
gi|215488247|ref|YP_002330678.1| Holliday junction resolvase-like protein [Escherichia coli O127:H6
str. E2348/69]
gi|218550196|ref|YP_002383987.1| Holliday junction resolvase-like protein [Escherichia fergusonii
ATCC 35469]
gi|218555508|ref|YP_002388421.1| Holliday junction resolvase-like protein [Escherichia coli IAI1]
gi|218706464|ref|YP_002413983.1| Holliday junction resolvase-like protein [Escherichia coli UMN026]
gi|260845619|ref|YP_003223397.1| Holliday junction resolvase [Escherichia coli O103:H2 str. 12009]
gi|260857082|ref|YP_003230973.1| Holliday junction resolvase [Escherichia coli O26:H11 str. 11368]
gi|260869636|ref|YP_003236038.1| putative Holliday junction resolvase [Escherichia coli O111:H- str.
11128]
gi|293406456|ref|ZP_06650382.1| Holliday junction resolvase-like protein [Escherichia coli
FVEC1412]
gi|293449279|ref|ZP_06663700.1| hypothetical protein ECCG_02310 [Escherichia coli B088]
gi|298382193|ref|ZP_06991790.1| Holliday junction resolvase [Escherichia coli FVEC1302]
gi|300815581|ref|ZP_07095805.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
107-1]
gi|300900234|ref|ZP_07118418.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
198-1]
gi|300925055|ref|ZP_07140973.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1]
gi|300928108|ref|ZP_07143653.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
187-1]
gi|307310430|ref|ZP_07590078.1| Holliday junction resolvase YqgF [Escherichia coli W]
gi|309794038|ref|ZP_07688463.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
145-7]
gi|312964788|ref|ZP_07779028.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|331664532|ref|ZP_08365438.1| putative Holliday junction resolvase [Escherichia coli TA143]
gi|331674430|ref|ZP_08375190.1| putative Holliday junction resolvase [Escherichia coli TA280]
gi|331684576|ref|ZP_08385168.1| putative Holliday junction resolvase [Escherichia coli H299]
gi|332280357|ref|ZP_08392770.1| holliday junction resolvase [Shigella sp. D9]
gi|378711600|ref|YP_005276493.1| Holliday junction resolvase YqgF [Escherichia coli KO11FL]
gi|383180111|ref|YP_005458116.1| Holliday junction resolvase-like protein [Shigella sonnei 53G]
gi|384544500|ref|YP_005728563.1| putative Holliday junction resolvase [Shigella flexneri 2002017]
gi|386610338|ref|YP_006125824.1| Holliday junction resolvase [Escherichia coli W]
gi|386620530|ref|YP_006140110.1| hypothetical protein ECNA114_2997 [Escherichia coli NA114]
gi|386625678|ref|YP_006145406.1| putative Holliday junction resolvase [Escherichia coli O7:K1 str.
CE10]
gi|386700097|ref|YP_006163934.1| Holliday junction resolvase-like protein [Escherichia coli KO11FL]
gi|386710846|ref|YP_006174567.1| Holliday junction resolvase-like protein [Escherichia coli W]
gi|404376244|ref|ZP_10981416.1| putative Holliday junction resolvase [Escherichia sp. 1_1_43]
gi|415787119|ref|ZP_11493852.1| hypothetical protein ECEPECA14_3458 [Escherichia coli EPECa14]
gi|415796295|ref|ZP_11497535.1| hypothetical protein ECE128010_1209 [Escherichia coli E128010]
gi|415811462|ref|ZP_11503812.1| hypothetical protein ECLT68_2156 [Escherichia coli LT-68]
gi|415818663|ref|ZP_11508385.1| hypothetical protein ECOK1180_1091 [Escherichia coli OK1180]
gi|415830421|ref|ZP_11516323.1| hypothetical protein ECOK1357_3299 [Escherichia coli OK1357]
gi|415845467|ref|ZP_11525004.1| hypothetical protein SS53G_1715 [Shigella sonnei 53G]
gi|415857946|ref|ZP_11532558.1| hypothetical protein SF2457T_3597 [Shigella flexneri 2a str. 2457T]
gi|415874125|ref|ZP_11541222.1| putative Holliday junction resolvase [Escherichia coli MS 79-10]
gi|416272254|ref|ZP_11643161.1| putative Holliday junction resolvase [Shigella dysenteriae CDC
74-1112]
gi|416282173|ref|ZP_11646321.1| Putative Holliday junction resolvase [Shigella boydii ATCC 9905]
gi|416301412|ref|ZP_11652961.1| Putative Holliday junction resolvase [Shigella flexneri CDC 796-83]
gi|416899257|ref|ZP_11928739.1| hypothetical protein ECSTEC7V_3568 [Escherichia coli STEC_7v]
gi|417119257|ref|ZP_11969622.1| RNAse H domain protein, YqgF family [Escherichia coli 1.2741]
gi|417123377|ref|ZP_11972287.1| RNAse H domain protein, YqgF family [Escherichia coli 97.0246]
gi|417133228|ref|ZP_11978013.1| RNAse H domain protein, YqgF family [Escherichia coli 5.0588]
gi|417150692|ref|ZP_11990431.1| RNAse H domain protein, YqgF family [Escherichia coli 1.2264]
gi|417157929|ref|ZP_11995553.1| RNAse H domain protein, YqgF family [Escherichia coli 96.0497]
gi|417162823|ref|ZP_11998153.1| RNAse H domain protein, YqgF family [Escherichia coli 99.0741]
gi|417176932|ref|ZP_12006728.1| RNAse H domain protein, YqgF family [Escherichia coli 3.2608]
gi|417186306|ref|ZP_12011449.1| RNAse H domain protein, YqgF family [Escherichia coli 93.0624]
gi|417199960|ref|ZP_12017197.1| RNAse H domain protein, YqgF family [Escherichia coli 4.0522]
gi|417211520|ref|ZP_12021819.1| RNAse H domain protein, YqgF family [Escherichia coli JB1-95]
gi|417237125|ref|ZP_12035092.1| RNAse H domain protein, YqgF family [Escherichia coli 9.0111]
gi|417251362|ref|ZP_12043127.1| RNAse H domain protein, YqgF family [Escherichia coli 4.0967]
gi|417296788|ref|ZP_12084035.1| RNAse H domain protein, YqgF family [Escherichia coli 900105 (10e)]
gi|417309420|ref|ZP_12096258.1| Holliday junction resolvase [Escherichia coli PCN033]
gi|417582456|ref|ZP_12233257.1| hypothetical protein ECSTECB2F1_3143 [Escherichia coli STEC_B2F1]
gi|417587988|ref|ZP_12238753.1| hypothetical protein ECSTECC16502_3643 [Escherichia coli
STEC_C165-02]
gi|417593313|ref|ZP_12244006.1| hypothetical protein EC253486_3937 [Escherichia coli 2534-86]
gi|417598310|ref|ZP_12248941.1| hypothetical protein EC30301_3458 [Escherichia coli 3030-1]
gi|417624971|ref|ZP_12275266.1| hypothetical protein ECSTECH18_3742 [Escherichia coli STEC_H.1.8]
gi|417630297|ref|ZP_12280533.1| hypothetical protein ECSTECMHI813_3240 [Escherichia coli
STEC_MHI813]
gi|417668366|ref|ZP_12317908.1| hypothetical protein ECSTECO31_3198 [Escherichia coli STEC_O31]
gi|417673819|ref|ZP_12323264.1| hypothetical protein SD15574_3397 [Shigella dysenteriae 155-74]
gi|417683767|ref|ZP_12333111.1| hypothetical protein SB359474_3535 [Shigella boydii 3594-74]
gi|417691225|ref|ZP_12340442.1| hypothetical protein SB521682_3504 [Shigella boydii 5216-82]
gi|417703954|ref|ZP_12353058.1| hypothetical protein SFK218_3952 [Shigella flexneri K-218]
gi|417709009|ref|ZP_12358037.1| hypothetical protein SFVA6_3843 [Shigella flexneri VA-6]
gi|417714022|ref|ZP_12362982.1| hypothetical protein SFK272_3772 [Shigella flexneri K-272]
gi|417718993|ref|ZP_12367885.1| hypothetical protein SFK227_3745 [Shigella flexneri K-227]
gi|417724468|ref|ZP_12373266.1| hypothetical protein SFK304_3754 [Shigella flexneri K-304]
gi|417729840|ref|ZP_12378533.1| hypothetical protein SFK671_3523 [Shigella flexneri K-671]
gi|417735078|ref|ZP_12383725.1| hypothetical protein SF274771_3535 [Shigella flexneri 2747-71]
gi|417739808|ref|ZP_12388382.1| hypothetical protein SF434370_3170 [Shigella flexneri 4343-70]
gi|417744788|ref|ZP_12393311.1| hypothetical protein SF293071_3447 [Shigella flexneri 2930-71]
gi|417757197|ref|ZP_12405268.1| hypothetical protein ECDEC2B_3539 [Escherichia coli DEC2B]
gi|417829410|ref|ZP_12475955.1| hypothetical protein SFJ1713_3428 [Shigella flexneri J1713]
gi|418258193|ref|ZP_12881594.1| hypothetical protein SF660363_3455 [Shigella flexneri 6603-63]
gi|418268265|ref|ZP_12887064.1| hypothetical protein SSMOSELEY_3912 [Shigella sonnei str. Moseley]
gi|418998128|ref|ZP_13545718.1| hypothetical protein ECDEC1A_3292 [Escherichia coli DEC1A]
gi|419003536|ref|ZP_13551054.1| hypothetical protein ECDEC1B_3453 [Escherichia coli DEC1B]
gi|419009072|ref|ZP_13556496.1| hypothetical protein ECDEC1C_3386 [Escherichia coli DEC1C]
gi|419014864|ref|ZP_13562207.1| putative Holliday junction resolvase [Escherichia coli DEC1D]
gi|419019890|ref|ZP_13567194.1| hypothetical protein ECDEC1E_3621 [Escherichia coli DEC1E]
gi|419025279|ref|ZP_13572502.1| putative Holliday junction resolvase [Escherichia coli DEC2A]
gi|419030434|ref|ZP_13577590.1| hypothetical protein ECDEC2C_3487 [Escherichia coli DEC2C]
gi|419036111|ref|ZP_13583193.1| hypothetical protein ECDEC2D_3457 [Escherichia coli DEC2D]
gi|419041122|ref|ZP_13588144.1| hypothetical protein ECDEC2E_3451 [Escherichia coli DEC2E]
gi|419176750|ref|ZP_13720562.1| hypothetical protein ECDEC7B_3213 [Escherichia coli DEC7B]
gi|419198601|ref|ZP_13741898.1| putative Holliday junction resolvase [Escherichia coli DEC8A]
gi|419205042|ref|ZP_13748215.1| hypothetical protein ECDEC8B_3940 [Escherichia coli DEC8B]
gi|419211374|ref|ZP_13754443.1| hypothetical protein ECDEC8C_4602 [Escherichia coli DEC8C]
gi|419217253|ref|ZP_13760249.1| hypothetical protein ECDEC8D_4036 [Escherichia coli DEC8D]
gi|419222995|ref|ZP_13765911.1| hypothetical protein ECDEC8E_3812 [Escherichia coli DEC8E]
gi|419228408|ref|ZP_13771254.1| hypothetical protein ECDEC9A_3832 [Escherichia coli DEC9A]
gi|419233952|ref|ZP_13776724.1| hypothetical protein ECDEC9B_3569 [Escherichia coli DEC9B]
gi|419239394|ref|ZP_13782105.1| hypothetical protein ECDEC9C_3633 [Escherichia coli DEC9C]
gi|419244911|ref|ZP_13787546.1| hypothetical protein ECDEC9D_3514 [Escherichia coli DEC9D]
gi|419250727|ref|ZP_13793299.1| hypothetical protein ECDEC9E_3959 [Escherichia coli DEC9E]
gi|419256526|ref|ZP_13799032.1| hypothetical protein ECDEC10A_4052 [Escherichia coli DEC10A]
gi|419262825|ref|ZP_13805236.1| hypothetical protein ECDEC10B_4426 [Escherichia coli DEC10B]
gi|419268486|ref|ZP_13810831.1| hypothetical protein ECDEC10C_4479 [Escherichia coli DEC10C]
gi|419274274|ref|ZP_13816565.1| hypothetical protein ECDEC10D_4049 [Escherichia coli DEC10D]
gi|419285666|ref|ZP_13827835.1| hypothetical protein ECDEC10F_4351 [Escherichia coli DEC10F]
gi|419291017|ref|ZP_13833105.1| hypothetical protein ECDEC11A_3398 [Escherichia coli DEC11A]
gi|419296299|ref|ZP_13838341.1| hypothetical protein ECDEC11B_3395 [Escherichia coli DEC11B]
gi|419301755|ref|ZP_13843752.1| putative Holliday junction resolvase [Escherichia coli DEC11C]
gi|419307894|ref|ZP_13849791.1| putative Holliday junction resolvase [Escherichia coli DEC11D]
gi|419312899|ref|ZP_13854759.1| putative Holliday junction resolvase [Escherichia coli DEC11E]
gi|419318292|ref|ZP_13860093.1| putative Holliday junction resolvase [Escherichia coli DEC12A]
gi|419324583|ref|ZP_13866273.1| hypothetical protein ECDEC12B_4096 [Escherichia coli DEC12B]
gi|419330563|ref|ZP_13872162.1| putative Holliday junction resolvase [Escherichia coli DEC12C]
gi|419336067|ref|ZP_13877588.1| hypothetical protein ECDEC12D_3840 [Escherichia coli DEC12D]
gi|419341428|ref|ZP_13882889.1| hypothetical protein ECDEC12E_3571 [Escherichia coli DEC12E]
gi|419803497|ref|ZP_14328668.1| Holliday junction resolvase YqgF [Escherichia coli AI27]
gi|419864657|ref|ZP_14387085.1| Holliday junction resolvase-like protein [Escherichia coli O103:H25
str. CVM9340]
gi|419867816|ref|ZP_14390131.1| Holliday junction resolvase-like protein [Escherichia coli O103:H2
str. CVM9450]
gi|419878962|ref|ZP_14400415.1| Holliday junction resolvase-like protein [Escherichia coli O111:H11
str. CVM9534]
gi|419879910|ref|ZP_14401330.1| Holliday junction resolvase-like protein [Escherichia coli O111:H11
str. CVM9545]
gi|419886468|ref|ZP_14407109.1| Holliday junction resolvase-like protein [Escherichia coli O111:H8
str. CVM9570]
gi|419892725|ref|ZP_14412732.1| Holliday junction resolvase-like protein [Escherichia coli O111:H8
str. CVM9574]
gi|419899168|ref|ZP_14418693.1| Holliday junction resolvase-like protein [Escherichia coli O26:H11
str. CVM9942]
gi|419910228|ref|ZP_14428755.1| Holliday junction resolvase YqgF [Escherichia coli O26:H11 str.
CVM10026]
gi|419924066|ref|ZP_14441964.1| Holliday junction resolvase-like protein [Escherichia coli 541-15]
gi|419927374|ref|ZP_14445111.1| Holliday junction resolvase-like protein [Escherichia coli 541-1]
gi|419934758|ref|ZP_14451860.1| Holliday junction resolvase-like protein [Escherichia coli 576-1]
gi|420089595|ref|ZP_14601378.1| Holliday junction resolvase-like protein [Escherichia coli O111:H8
str. CVM9602]
gi|420094451|ref|ZP_14606042.1| Holliday junction resolvase-like protein [Escherichia coli O111:H8
str. CVM9634]
gi|420112071|ref|ZP_14621882.1| Holliday junction resolvase-like protein [Escherichia coli O111:H11
str. CVM9553]
gi|420116868|ref|ZP_14626242.1| Holliday junction resolvase-like protein [Escherichia coli O26:H11
str. CVM10021]
gi|420120605|ref|ZP_14629803.1| Holliday junction resolvase-like protein [Escherichia coli O26:H11
str. CVM10030]
gi|420129321|ref|ZP_14637858.1| Holliday junction resolvase-like protein [Escherichia coli O26:H11
str. CVM10224]
gi|420132345|ref|ZP_14640714.1| Holliday junction resolvase-like protein [Escherichia coli O26:H11
str. CVM9952]
gi|420321897|ref|ZP_14823721.1| putative Holliday junction resolvase [Shigella flexneri 2850-71]
gi|420327222|ref|ZP_14828967.1| putative Holliday junction resolvase [Shigella flexneri CCH060]
gi|420332663|ref|ZP_14834312.1| putative Holliday junction resolvase [Shigella flexneri K-1770]
gi|420337609|ref|ZP_14839171.1| putative Holliday junction resolvase [Shigella flexneri K-315]
gi|420343296|ref|ZP_14844762.1| putative Holliday junction resolvase [Shigella flexneri K-404]
gi|420354426|ref|ZP_14855512.1| putative Holliday junction resolvase [Shigella boydii 4444-74]
gi|420360269|ref|ZP_14861227.1| putative Holliday junction resolvase [Shigella sonnei 3226-85]
gi|420364886|ref|ZP_14865757.1| hypothetical protein SS482266_3321 [Shigella sonnei 4822-66]
gi|420375161|ref|ZP_14875061.1| putative Holliday junction resolvase [Shigella flexneri 1235-66]
gi|420381673|ref|ZP_14881113.1| putative Holliday junction resolvase [Shigella dysenteriae 225-75]
gi|420392989|ref|ZP_14892236.1| hypothetical protein ECEPECC34262_3837 [Escherichia coli EPEC
C342-62]
gi|421684064|ref|ZP_16123853.1| hypothetical protein SF148580_3419 [Shigella flexneri 1485-80]
gi|421775613|ref|ZP_16212222.1| Holliday junction resolvase YqgF [Escherichia coli AD30]
gi|422010502|ref|ZP_16357460.1| Holliday junction resolvase-like protein [Escherichia coli O111:H11
str. CVM9455]
gi|422331973|ref|ZP_16412988.1| putative Holliday junction resolvase [Escherichia coli 4_1_47FAA]
gi|422775818|ref|ZP_16829473.1| hypothetical protein EREG_01795 [Escherichia coli H120]
gi|422780109|ref|ZP_16832894.1| hypothetical protein ERFG_00347 [Escherichia coli TW10509]
gi|422787544|ref|ZP_16840282.1| hypothetical protein ERGG_02693 [Escherichia coli H489]
gi|422800889|ref|ZP_16849386.1| hypothetical protein ERJG_02055 [Escherichia coli M863]
gi|422804228|ref|ZP_16852660.1| hypothetical protein ERIG_00364 [Escherichia fergusonii B253]
gi|422959690|ref|ZP_16971325.1| RNAse H-fold protein YqgF [Escherichia coli H494]
gi|422969910|ref|ZP_16973703.1| RNAse H-fold protein YqgF [Escherichia coli TA124]
gi|424748326|ref|ZP_18176473.1| Holliday junction resolvase-like protein [Escherichia coli O26:H11
str. CFSAN001629]
gi|424758266|ref|ZP_18185982.1| Holliday junction resolvase-like protein [Escherichia coli O111:H11
str. CFSAN001630]
gi|424773918|ref|ZP_18200969.1| Holliday junction resolvase-like protein [Escherichia coli O111:H8
str. CFSAN001632]
gi|424817486|ref|ZP_18242637.1| Holliday junction resolvase-like protein [Escherichia fergusonii
ECD227]
gi|424839243|ref|ZP_18263880.1| Holliday junction resolvase-like protein [Shigella flexneri 5a str.
M90T]
gi|425306713|ref|ZP_18696400.1| putative Holliday junction resolvase [Escherichia coli N1]
gi|425381175|ref|ZP_18765183.1| putative Holliday junction resolvase [Escherichia coli EC1865]
gi|432354876|ref|ZP_19598145.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE2]
gi|432393422|ref|ZP_19636250.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE21]
gi|432403228|ref|ZP_19645976.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE26]
gi|432427504|ref|ZP_19669993.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE181]
gi|432461961|ref|ZP_19704102.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE204]
gi|432490716|ref|ZP_19732580.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE213]
gi|432501398|ref|ZP_19743151.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE216]
gi|432539227|ref|ZP_19776123.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE235]
gi|432560135|ref|ZP_19796797.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE49]
gi|432577146|ref|ZP_19813599.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE56]
gi|432603603|ref|ZP_19839845.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE66]
gi|432632728|ref|ZP_19868649.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE80]
gi|432642439|ref|ZP_19878267.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE83]
gi|432667429|ref|ZP_19903005.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE116]
gi|432676058|ref|ZP_19911512.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE142]
gi|432695730|ref|ZP_19930924.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE162]
gi|432751419|ref|ZP_19986002.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE29]
gi|432771883|ref|ZP_20006202.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE50]
gi|432794111|ref|ZP_20028193.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE78]
gi|432795612|ref|ZP_20029672.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE79]
gi|432807132|ref|ZP_20041047.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE91]
gi|432828581|ref|ZP_20062199.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE135]
gi|432835882|ref|ZP_20069416.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE136]
gi|432840742|ref|ZP_20074202.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE140]
gi|432854077|ref|ZP_20082622.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE144]
gi|432864178|ref|ZP_20087905.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE146]
gi|432870392|ref|ZP_20090849.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE147]
gi|432888203|ref|ZP_20101955.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE158]
gi|432921083|ref|ZP_20124547.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE173]
gi|432928642|ref|ZP_20129762.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE175]
gi|432935925|ref|ZP_20135193.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE184]
gi|432963303|ref|ZP_20152722.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE202]
gi|432982289|ref|ZP_20171062.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE211]
gi|433054607|ref|ZP_20241775.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE122]
gi|433064370|ref|ZP_20251283.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE125]
gi|433069255|ref|ZP_20256033.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE128]
gi|433093333|ref|ZP_20279591.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE138]
gi|433097715|ref|ZP_20283893.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE139]
gi|433107171|ref|ZP_20293138.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE148]
gi|433179799|ref|ZP_20364187.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE82]
gi|433194999|ref|ZP_20378980.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE90]
gi|433204641|ref|ZP_20388397.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE95]
gi|442597759|ref|ZP_21015538.1| Putative Holliday junction resolvase YggF [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|450192374|ref|ZP_21891609.1| Holliday junction resolvase-like protein [Escherichia coli SEPT362]
gi|450221928|ref|ZP_21896643.1| Holliday junction resolvase-like protein [Escherichia coli O08]
gi|62901027|sp|Q83JS4.1|RUVX_SHIFL RecName: Full=Putative Holliday junction resolvase
gi|123342527|sp|Q0T0U3.1|RUVX_SHIF8 RecName: Full=Putative Holliday junction resolvase
gi|126352258|sp|Q3YXS2.1|RUVX_SHISS RecName: Full=Putative Holliday junction resolvase
gi|146325606|sp|Q31WL1.1|RUVX_SHIBS RecName: Full=Putative Holliday junction resolvase
gi|167012718|sp|A7ZR72.1|RUVX_ECO24 RecName: Full=Putative Holliday junction resolvase
gi|226695304|sp|B2U0W9.1|RUVX_SHIB3 RecName: Full=Putative Holliday junction resolvase
gi|226725518|sp|B7LYX9.1|RUVX_ECO8A RecName: Full=Putative Holliday junction resolvase
gi|226725520|sp|B7N7K2.1|RUVX_ECOLU RecName: Full=Putative Holliday junction resolvase
gi|226725522|sp|B1LDF8.1|RUVX_ECOSM RecName: Full=Putative Holliday junction resolvase
gi|226725523|sp|B7LPR6.1|RUVX_ESCF3 RecName: Full=Putative Holliday junction resolvase
gi|254767514|sp|B7UHZ6.1|RUVX_ECO27 RecName: Full=Putative Holliday junction resolvase
gi|24053351|gb|AAN44421.1| conserved hypothetical protein [Shigella flexneri 2a str. 301]
gi|30042522|gb|AAP18246.1| hypothetical protein S3144 [Shigella flexneri 2a str. 2457T]
gi|73856983|gb|AAZ89690.1| conserved hypothetical protein [Shigella sonnei Ss046]
gi|81246839|gb|ABB67547.1| conserved hypothetical protein [Shigella boydii Sb227]
gi|110616405|gb|ABF05072.1| conserved hypothetical protein [Shigella flexneri 5 str. 8401]
gi|157080778|gb|ABV20486.1| conserved hypothetical protein TIGR00250 [Escherichia coli E24377A]
gi|170519464|gb|ACB17642.1| putative Holliday junction resolvase [Escherichia coli SMS-3-5]
gi|187428861|gb|ACD08135.1| putative Holliday junction resolvase [Shigella boydii CDC 3083-94]
gi|190902043|gb|EDV61789.1| putative Holliday junction resolvase [Escherichia coli B7A]
gi|192930744|gb|EDV83349.1| putative Holliday junction resolvase [Escherichia coli E22]
gi|192959335|gb|EDV89770.1| putative Holliday junction resolvase [Escherichia coli E110019]
gi|194415651|gb|EDX31918.1| putative Holliday junction resolvase [Escherichia coli B171]
gi|194419995|gb|EDX36073.1| putative Holliday junction resolvase [Shigella dysenteriae 1012]
gi|194424377|gb|EDX40364.1| putative Holliday junction resolvase [Escherichia coli 101-1]
gi|215266319|emb|CAS10750.1| predicted Holliday junction resolvase [Escherichia coli O127:H6
str. E2348/69]
gi|218357737|emb|CAQ90381.1| Holliday junction resolvase [Escherichia fergusonii ATCC 35469]
gi|218362276|emb|CAQ99897.1| Holliday junction resolvase [Escherichia coli IAI1]
gi|218433561|emb|CAR14464.1| Holliday junction resolvase [Escherichia coli UMN026]
gi|226839622|gb|EEH71643.1| putative Holliday junction resolvase [Escherichia sp. 1_1_43]
gi|257755731|dbj|BAI27233.1| predicted Holliday junction resolvase [Escherichia coli O26:H11
str. 11368]
gi|257760766|dbj|BAI32263.1| predicted Holliday junction resolvase [Escherichia coli O103:H2
str. 12009]
gi|257765992|dbj|BAI37487.1| predicted Holliday junction resolvase [Escherichia coli O111:H-
str. 11128]
gi|281602286|gb|ADA75270.1| putative Holliday junction resolvase [Shigella flexneri 2002017]
gi|291322369|gb|EFE61798.1| hypothetical protein ECCG_02310 [Escherichia coli B088]
gi|291426462|gb|EFE99494.1| Holliday junction resolvase-like protein [Escherichia coli
FVEC1412]
gi|298277333|gb|EFI18849.1| Holliday junction resolvase [Escherichia coli FVEC1302]
gi|300356250|gb|EFJ72120.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
198-1]
gi|300418801|gb|EFK02112.1| hypothetical protein HMPREF9548_03162 [Escherichia coli MS 182-1]
gi|300463874|gb|EFK27367.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
187-1]
gi|300531510|gb|EFK52572.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
107-1]
gi|306909325|gb|EFN39820.1| Holliday junction resolvase YqgF [Escherichia coli W]
gi|308122445|gb|EFO59707.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
145-7]
gi|312290344|gb|EFR18224.1| conserved hypothetical protein [Escherichia coli 2362-75]
gi|313647999|gb|EFS12445.1| hypothetical protein SF2457T_3597 [Shigella flexneri 2a str. 2457T]
gi|315062255|gb|ADT76582.1| predicted Holliday junction resolvase [Escherichia coli W]
gi|320174055|gb|EFW49225.1| putative Holliday junction resolvase [Shigella dysenteriae CDC
74-1112]
gi|320181046|gb|EFW55967.1| Putative Holliday junction resolvase [Shigella boydii ATCC 9905]
gi|320184296|gb|EFW59108.1| Putative Holliday junction resolvase [Shigella flexneri CDC 796-83]
gi|323154658|gb|EFZ40857.1| hypothetical protein ECEPECA14_3458 [Escherichia coli EPECa14]
gi|323162605|gb|EFZ48452.1| hypothetical protein ECE128010_1209 [Escherichia coli E128010]
gi|323167999|gb|EFZ53688.1| hypothetical protein SS53G_1715 [Shigella sonnei 53G]
gi|323173837|gb|EFZ59466.1| hypothetical protein ECLT68_2156 [Escherichia coli LT-68]
gi|323180409|gb|EFZ65961.1| hypothetical protein ECOK1180_1091 [Escherichia coli OK1180]
gi|323183520|gb|EFZ68917.1| hypothetical protein ECOK1357_3299 [Escherichia coli OK1357]
gi|323377161|gb|ADX49429.1| Holliday junction resolvase YqgF [Escherichia coli KO11FL]
gi|323946553|gb|EGB42576.1| hypothetical protein EREG_01795 [Escherichia coli H120]
gi|323960758|gb|EGB56379.1| hypothetical protein ERGG_02693 [Escherichia coli H489]
gi|323966466|gb|EGB61899.1| hypothetical protein ERJG_02055 [Escherichia coli M863]
gi|323978756|gb|EGB73837.1| hypothetical protein ERFG_00347 [Escherichia coli TW10509]
gi|324115036|gb|EGC09001.1| hypothetical protein ERIG_00364 [Escherichia fergusonii B253]
gi|325498506|gb|EGC96365.1| Holliday junction resolvase-like protein [Escherichia fergusonii
ECD227]
gi|327251717|gb|EGE63403.1| hypothetical protein ECSTEC7V_3568 [Escherichia coli STEC_7v]
gi|331058463|gb|EGI30444.1| putative Holliday junction resolvase [Escherichia coli TA143]
gi|331068524|gb|EGI39919.1| putative Holliday junction resolvase [Escherichia coli TA280]
gi|331078191|gb|EGI49397.1| putative Holliday junction resolvase [Escherichia coli H299]
gi|332086878|gb|EGI92014.1| hypothetical protein SB521682_3504 [Shigella boydii 5216-82]
gi|332087651|gb|EGI92778.1| hypothetical protein SD15574_3397 [Shigella dysenteriae 155-74]
gi|332091359|gb|EGI96447.1| hypothetical protein SB359474_3535 [Shigella boydii 3594-74]
gi|332102709|gb|EGJ06055.1| holliday junction resolvase [Shigella sp. D9]
gi|332752992|gb|EGJ83376.1| hypothetical protein SF434370_3170 [Shigella flexneri 4343-70]
gi|332753793|gb|EGJ84172.1| hypothetical protein SFK671_3523 [Shigella flexneri K-671]
gi|332754509|gb|EGJ84875.1| hypothetical protein SF274771_3535 [Shigella flexneri 2747-71]
gi|332765366|gb|EGJ95584.1| hypothetical protein SF293071_3447 [Shigella flexneri 2930-71]
gi|332999696|gb|EGK19281.1| hypothetical protein SFVA6_3843 [Shigella flexneri VA-6]
gi|333000337|gb|EGK19920.1| hypothetical protein SFK218_3952 [Shigella flexneri K-218]
gi|333000451|gb|EGK20032.1| hypothetical protein SFK272_3772 [Shigella flexneri K-272]
gi|333015023|gb|EGK34366.1| hypothetical protein SFK304_3754 [Shigella flexneri K-304]
gi|333015289|gb|EGK34631.1| hypothetical protein SFK227_3745 [Shigella flexneri K-227]
gi|333971031|gb|AEG37836.1| hypothetical protein ECNA114_2997 [Escherichia coli NA114]
gi|335573807|gb|EGM60145.1| hypothetical protein SFJ1713_3428 [Shigella flexneri J1713]
gi|338769081|gb|EGP23863.1| Holliday junction resolvase [Escherichia coli PCN033]
gi|342930243|gb|EGU98965.1| putative Holliday junction resolvase [Escherichia coli MS 79-10]
gi|345333679|gb|EGW66128.1| hypothetical protein ECSTECC16502_3643 [Escherichia coli
STEC_C165-02]
gi|345335405|gb|EGW67844.1| hypothetical protein EC253486_3937 [Escherichia coli 2534-86]
gi|345335913|gb|EGW68350.1| hypothetical protein ECSTECB2F1_3143 [Escherichia coli STEC_B2F1]
gi|345351129|gb|EGW83395.1| hypothetical protein EC30301_3458 [Escherichia coli 3030-1]
gi|345371868|gb|EGX03837.1| hypothetical protein ECSTECMHI813_3240 [Escherichia coli
STEC_MHI813]
gi|345376057|gb|EGX08003.1| hypothetical protein ECSTECH18_3742 [Escherichia coli STEC_H.1.8]
gi|349739414|gb|AEQ14120.1| putative Holliday junction resolvase [Escherichia coli O7:K1 str.
CE10]
gi|371594890|gb|EHN83748.1| RNAse H-fold protein YqgF [Escherichia coli H494]
gi|371600767|gb|EHN89537.1| RNAse H-fold protein YqgF [Escherichia coli TA124]
gi|373247188|gb|EHP66635.1| putative Holliday junction resolvase [Escherichia coli 4_1_47FAA]
gi|377842078|gb|EHU07133.1| hypothetical protein ECDEC1A_3292 [Escherichia coli DEC1A]
gi|377842427|gb|EHU07481.1| hypothetical protein ECDEC1C_3386 [Escherichia coli DEC1C]
gi|377845259|gb|EHU10282.1| hypothetical protein ECDEC1B_3453 [Escherichia coli DEC1B]
gi|377855546|gb|EHU20417.1| putative Holliday junction resolvase [Escherichia coli DEC1D]
gi|377859050|gb|EHU23888.1| hypothetical protein ECDEC1E_3621 [Escherichia coli DEC1E]
gi|377862637|gb|EHU27449.1| putative Holliday junction resolvase [Escherichia coli DEC2A]
gi|377872575|gb|EHU37221.1| hypothetical protein ECDEC2B_3539 [Escherichia coli DEC2B]
gi|377875811|gb|EHU40420.1| hypothetical protein ECDEC2C_3487 [Escherichia coli DEC2C]
gi|377877721|gb|EHU42311.1| hypothetical protein ECDEC2D_3457 [Escherichia coli DEC2D]
gi|377888224|gb|EHU52696.1| hypothetical protein ECDEC2E_3451 [Escherichia coli DEC2E]
gi|378030911|gb|EHV93504.1| hypothetical protein ECDEC7B_3213 [Escherichia coli DEC7B]
gi|378045146|gb|EHW07552.1| putative Holliday junction resolvase [Escherichia coli DEC8A]
gi|378046237|gb|EHW08617.1| hypothetical protein ECDEC8B_3940 [Escherichia coli DEC8B]
gi|378050569|gb|EHW12896.1| hypothetical protein ECDEC8C_4602 [Escherichia coli DEC8C]
gi|378059842|gb|EHW22041.1| hypothetical protein ECDEC8D_4036 [Escherichia coli DEC8D]
gi|378063804|gb|EHW25968.1| hypothetical protein ECDEC8E_3812 [Escherichia coli DEC8E]
gi|378071012|gb|EHW33084.1| hypothetical protein ECDEC9A_3832 [Escherichia coli DEC9A]
gi|378075759|gb|EHW37773.1| hypothetical protein ECDEC9B_3569 [Escherichia coli DEC9B]
gi|378082588|gb|EHW44533.1| hypothetical protein ECDEC9C_3633 [Escherichia coli DEC9C]
gi|378088873|gb|EHW50723.1| hypothetical protein ECDEC9D_3514 [Escherichia coli DEC9D]
gi|378092596|gb|EHW54418.1| hypothetical protein ECDEC9E_3959 [Escherichia coli DEC9E]
gi|378098763|gb|EHW60495.1| hypothetical protein ECDEC10A_4052 [Escherichia coli DEC10A]
gi|378104787|gb|EHW66445.1| hypothetical protein ECDEC10B_4426 [Escherichia coli DEC10B]
gi|378108992|gb|EHW70603.1| hypothetical protein ECDEC10C_4479 [Escherichia coli DEC10C]
gi|378114980|gb|EHW76531.1| hypothetical protein ECDEC10D_4049 [Escherichia coli DEC10D]
gi|378128029|gb|EHW89415.1| hypothetical protein ECDEC11A_3398 [Escherichia coli DEC11A]
gi|378129696|gb|EHW91067.1| hypothetical protein ECDEC10F_4351 [Escherichia coli DEC10F]
gi|378140367|gb|EHX01595.1| hypothetical protein ECDEC11B_3395 [Escherichia coli DEC11B]
gi|378146821|gb|EHX07971.1| putative Holliday junction resolvase [Escherichia coli DEC11D]
gi|378149354|gb|EHX10481.1| putative Holliday junction resolvase [Escherichia coli DEC11C]
gi|378156976|gb|EHX18022.1| putative Holliday junction resolvase [Escherichia coli DEC11E]
gi|378163798|gb|EHX24750.1| hypothetical protein ECDEC12B_4096 [Escherichia coli DEC12B]
gi|378168089|gb|EHX29000.1| putative Holliday junction resolvase [Escherichia coli DEC12A]
gi|378168256|gb|EHX29165.1| putative Holliday junction resolvase [Escherichia coli DEC12C]
gi|378180470|gb|EHX41157.1| hypothetical protein ECDEC12D_3840 [Escherichia coli DEC12D]
gi|378185977|gb|EHX46601.1| hypothetical protein ECDEC12E_3571 [Escherichia coli DEC12E]
gi|383391624|gb|AFH16582.1| Holliday junction resolvase-like protein [Escherichia coli KO11FL]
gi|383406538|gb|AFH12781.1| Holliday junction resolvase-like protein [Escherichia coli W]
gi|383468295|gb|EID63316.1| Holliday junction resolvase-like protein [Shigella flexneri 5a str.
M90T]
gi|384473614|gb|EIE57654.1| Holliday junction resolvase YqgF [Escherichia coli AI27]
gi|386137610|gb|EIG78772.1| RNAse H domain protein, YqgF family [Escherichia coli 1.2741]
gi|386146768|gb|EIG93213.1| RNAse H domain protein, YqgF family [Escherichia coli 97.0246]
gi|386151082|gb|EIH02371.1| RNAse H domain protein, YqgF family [Escherichia coli 5.0588]
gi|386160186|gb|EIH21997.1| RNAse H domain protein, YqgF family [Escherichia coli 1.2264]
gi|386166679|gb|EIH33199.1| RNAse H domain protein, YqgF family [Escherichia coli 96.0497]
gi|386173314|gb|EIH45326.1| RNAse H domain protein, YqgF family [Escherichia coli 99.0741]
gi|386179624|gb|EIH57103.1| RNAse H domain protein, YqgF family [Escherichia coli 3.2608]
gi|386182298|gb|EIH65056.1| RNAse H domain protein, YqgF family [Escherichia coli 93.0624]
gi|386187763|gb|EIH76576.1| RNAse H domain protein, YqgF family [Escherichia coli 4.0522]
gi|386195094|gb|EIH89330.1| RNAse H domain protein, YqgF family [Escherichia coli JB1-95]
gi|386214210|gb|EII24633.1| RNAse H domain protein, YqgF family [Escherichia coli 9.0111]
gi|386218211|gb|EII34694.1| RNAse H domain protein, YqgF family [Escherichia coli 4.0967]
gi|386260232|gb|EIJ15706.1| RNAse H domain protein, YqgF family [Escherichia coli 900105 (10e)]
gi|388333374|gb|EIL00009.1| Holliday junction resolvase-like protein [Escherichia coli O111:H11
str. CVM9534]
gi|388339638|gb|EIL05991.1| Holliday junction resolvase-like protein [Escherichia coli O103:H25
str. CVM9340]
gi|388346889|gb|EIL12599.1| Holliday junction resolvase-like protein [Escherichia coli O103:H2
str. CVM9450]
gi|388365673|gb|EIL29456.1| Holliday junction resolvase-like protein [Escherichia coli O111:H8
str. CVM9570]
gi|388368886|gb|EIL32506.1| Holliday junction resolvase-like protein [Escherichia coli O111:H8
str. CVM9574]
gi|388370392|gb|EIL33922.1| Holliday junction resolvase-like protein [Escherichia coli O111:H11
str. CVM9545]
gi|388372063|gb|EIL35513.1| Holliday junction resolvase YqgF [Escherichia coli O26:H11 str.
CVM10026]
gi|388380505|gb|EIL43108.1| Holliday junction resolvase-like protein [Escherichia coli O26:H11
str. CVM9942]
gi|388391070|gb|EIL52544.1| Holliday junction resolvase-like protein [Escherichia coli 541-15]
gi|388406985|gb|EIL67362.1| Holliday junction resolvase-like protein [Escherichia coli 576-1]
gi|388407603|gb|EIL67968.1| Holliday junction resolvase-like protein [Escherichia coli 541-1]
gi|391246306|gb|EIQ05567.1| putative Holliday junction resolvase [Shigella flexneri 2850-71]
gi|391247984|gb|EIQ07228.1| putative Holliday junction resolvase [Shigella flexneri CCH060]
gi|391248741|gb|EIQ07979.1| putative Holliday junction resolvase [Shigella flexneri K-1770]
gi|391259483|gb|EIQ18557.1| putative Holliday junction resolvase [Shigella flexneri K-315]
gi|391264129|gb|EIQ23125.1| putative Holliday junction resolvase [Shigella flexneri K-404]
gi|391275688|gb|EIQ34473.1| putative Holliday junction resolvase [Shigella boydii 4444-74]
gi|391279409|gb|EIQ38097.1| putative Holliday junction resolvase [Shigella sonnei 3226-85]
gi|391292819|gb|EIQ51130.1| hypothetical protein SS482266_3321 [Shigella sonnei 4822-66]
gi|391299180|gb|EIQ57144.1| putative Holliday junction resolvase [Shigella dysenteriae 225-75]
gi|391311086|gb|EIQ68732.1| hypothetical protein ECEPECC34262_3837 [Escherichia coli EPEC
C342-62]
gi|391313771|gb|EIQ71339.1| putative Holliday junction resolvase [Shigella flexneri 1235-66]
gi|394383247|gb|EJE60853.1| Holliday junction resolvase-like protein [Escherichia coli O26:H11
str. CVM10224]
gi|394387332|gb|EJE64790.1| Holliday junction resolvase-like protein [Escherichia coli O111:H8
str. CVM9602]
gi|394394049|gb|EJE70678.1| Holliday junction resolvase-like protein [Escherichia coli O111:H11
str. CVM9455]
gi|394396301|gb|EJE72677.1| Holliday junction resolvase-like protein [Escherichia coli O111:H8
str. CVM9634]
gi|394397397|gb|EJE73670.1| Holliday junction resolvase-like protein [Escherichia coli O111:H11
str. CVM9553]
gi|394402830|gb|EJE78518.1| Holliday junction resolvase-like protein [Escherichia coli O26:H11
str. CVM10021]
gi|394428902|gb|EJF01387.1| Holliday junction resolvase-like protein [Escherichia coli O26:H11
str. CVM10030]
gi|394430004|gb|EJF02387.1| Holliday junction resolvase-like protein [Escherichia coli O26:H11
str. CVM9952]
gi|397784332|gb|EJK95188.1| hypothetical protein ECSTECO31_3198 [Escherichia coli STEC_O31]
gi|397895887|gb|EJL12312.1| hypothetical protein SF660363_3455 [Shigella flexneri 6603-63]
gi|397897247|gb|EJL13657.1| hypothetical protein SSMOSELEY_3912 [Shigella sonnei str. Moseley]
gi|404337034|gb|EJZ63489.1| hypothetical protein SF148580_3419 [Shigella flexneri 1485-80]
gi|408227053|gb|EKI50673.1| putative Holliday junction resolvase [Escherichia coli N1]
gi|408295109|gb|EKJ13451.1| putative Holliday junction resolvase [Escherichia coli EC1865]
gi|408459499|gb|EKJ83281.1| Holliday junction resolvase YqgF [Escherichia coli AD30]
gi|421935416|gb|EKT93108.1| Holliday junction resolvase-like protein [Escherichia coli O111:H8
str. CFSAN001632]
gi|421944956|gb|EKU02195.1| Holliday junction resolvase-like protein [Escherichia coli O26:H11
str. CFSAN001629]
gi|421948779|gb|EKU05783.1| Holliday junction resolvase-like protein [Escherichia coli O111:H11
str. CFSAN001630]
gi|430873784|gb|ELB97350.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE2]
gi|430916888|gb|ELC37947.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE21]
gi|430924387|gb|ELC45108.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE26]
gi|430953297|gb|ELC72197.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE181]
gi|430987639|gb|ELD04169.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE204]
gi|431018764|gb|ELD32194.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE213]
gi|431026765|gb|ELD39833.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE216]
gi|431067640|gb|ELD76156.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE235]
gi|431089730|gb|ELD95534.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE49]
gi|431113701|gb|ELE17355.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE56]
gi|431139962|gb|ELE41740.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE66]
gi|431167857|gb|ELE68111.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE80]
gi|431179971|gb|ELE79862.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE83]
gi|431199144|gb|ELE97906.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE116]
gi|431212763|gb|ELF10689.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE142]
gi|431232358|gb|ELF28026.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE162]
gi|431294595|gb|ELF84774.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE29]
gi|431312975|gb|ELG00955.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE50]
gi|431338181|gb|ELG25268.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE78]
gi|431350678|gb|ELG37489.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE79]
gi|431353574|gb|ELG40327.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE91]
gi|431383435|gb|ELG67559.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE135]
gi|431383937|gb|ELG68060.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE136]
gi|431387372|gb|ELG71196.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE140]
gi|431398492|gb|ELG81912.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE144]
gi|431403459|gb|ELG86740.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE146]
gi|431409362|gb|ELG92537.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE147]
gi|431414658|gb|ELG97209.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE158]
gi|431439233|gb|ELH20569.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE173]
gi|431442629|gb|ELH23718.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE175]
gi|431451817|gb|ELH32288.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE184]
gi|431471878|gb|ELH51770.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE202]
gi|431490413|gb|ELH70030.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE211]
gi|431568315|gb|ELI41303.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE122]
gi|431579686|gb|ELI52266.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE125]
gi|431581315|gb|ELI53768.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE128]
gi|431608614|gb|ELI77956.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE138]
gi|431614012|gb|ELI83177.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE139]
gi|431625371|gb|ELI93956.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE148]
gi|431699050|gb|ELJ64067.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE82]
gi|431714384|gb|ELJ78576.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE90]
gi|431718078|gb|ELJ82159.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE95]
gi|441653733|emb|CCQ01428.1| Putative Holliday junction resolvase YggF [Escherichia coli
O5:K4(L):H4 str. ATCC 23502]
gi|449315568|gb|EMD05709.1| Holliday junction resolvase-like protein [Escherichia coli O08]
gi|449318690|gb|EMD08754.1| Holliday junction resolvase-like protein [Escherichia coli SEPT362]
Length = 138
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|420368921|ref|ZP_14869652.1| putative Holliday junction resolvase [Shigella flexneri 1235-66]
gi|391321692|gb|EIQ78409.1| putative Holliday junction resolvase [Shigella flexneri 1235-66]
Length = 138
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RPL +K + + L+E +E + DE I+GLP
Sbjct: 11 GTKSIGVAIGQRITGTA-------RPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ + K
Sbjct: 64 NMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 181 TDAYAAVILLERYF 194
D+ +AVI+LE YF
Sbjct: 121 VDSASAVIILESYF 134
>gi|220917826|ref|YP_002493130.1| Holliday junction resolvase-like protein [Anaeromyxobacter
dehalogenans 2CP-1]
gi|254767492|sp|B8JDZ9.1|RUVX_ANAD2 RecName: Full=Putative Holliday junction resolvase
gi|219955680|gb|ACL66064.1| Holliday junction resolvase YqgF [Anaeromyxobacter dehalogenans
2CP-1]
Length = 137
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/133 (35%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKS 121
+LGVDLG R GLA++ R +T + R E +L + E+A+ E ++GLP +
Sbjct: 3 TLGVDLGRVRIGLAVADEILRTARAVTTVVRRTEAEDLAAIAEVARDYEVTRAVVGLPLN 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG+E P + R A RL A G V L DE +S EA R+ GLS ++ +
Sbjct: 63 MDGTEGPSARLARGFAPRL---EAALGVPVELFDERLSSFEAESRLRARGLSAREQRGQV 119
Query: 182 DAYAAVILLERYF 194
DA AA ++L+ +
Sbjct: 120 DAEAAAVILQGWL 132
>gi|260599276|ref|YP_003211847.1| Holliday junction resolvase-like protein [Cronobacter turicensis
z3032]
gi|260218453|emb|CBA33583.1| Putative Holliday junction resolvase [Cronobacter turicensis z3032]
Length = 138
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 71/139 (51%), Gaps = 6/139 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + D+ I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRVTATARPLNAIKAQNGNPDWTIIERLLKEWQPDDVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P +++ R+ A RL R G +V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTSRARTFANRLHGRF---GIKVTLHDERLSTVEARAGLFERGGFRALNKG 119
Query: 180 KTDAYAAVILLERYFSMSG 198
D+ +AV++LE YF G
Sbjct: 120 SVDSASAVVILESYFEQHG 138
>gi|340000627|ref|YP_004731511.1| hypothetical protein SBG_2697 [Salmonella bongori NCTC 12419]
gi|323669743|emb|CBJ94867.1| conserved hypothetical protein [Salmonella bongori]
gi|327412913|emb|CAX67927.1| conserved hypothetical protein [Salmonella bongori]
gi|339513989|emb|CCC31748.1| conserved hypothetical protein [Salmonella bongori NCTC 12419]
Length = 138
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RPL LK + + L+E +E + DE I+GLP
Sbjct: 11 GTKSIGVAIGQRITGTA-------RPLPALKAQDGTPDWTLIERLLKEWQPDEIIVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ + K
Sbjct: 64 NMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARAGLFEQGGYRALNKGK 120
Query: 181 TDAYAAVILLERYF 194
D+ +AVI+LE YF
Sbjct: 121 VDSASAVIILESYF 134
>gi|340756427|ref|ZP_08693039.1| Holliday junction resolvase [Fusobacterium sp. D12]
gi|419840709|ref|ZP_14364096.1| RNAse H domain protein, YqgF family [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|421501369|ref|ZP_15948334.1| RNAse H domain protein, YqgF family [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
gi|313685908|gb|EFS22743.1| Holliday junction resolvase [Fusobacterium sp. D12]
gi|386907245|gb|EIJ71959.1| RNAse H domain protein, YqgF family [Fusobacterium necrophorum
subsp. funduliforme ATCC 51357]
gi|402266045|gb|EJU15496.1| RNAse H domain protein, YqgF family [Fusobacterium necrophorum
subsp. funduliforme Fnf 1007]
Length = 139
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 73/135 (54%), Gaps = 7/135 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
L +D+G R G+A S G PL + R EK +++++ + E T ++G+PKS D
Sbjct: 6 LALDVGDVRIGVAKSDPLGMLAIPLETIDRRKEKPVKRIMQLCEEENTKSIVVGIPKSLD 65
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--T 181
GSE Q+ KVR A+++A G + +DE T+ A DR++ K A + +
Sbjct: 66 GSEKRQAEKVRIFIH--ALKSAIPGVEILEVDERFTTVTA-DRILTEMNRKGALEKRKVV 122
Query: 182 DAYAAVILLERYFSM 196
D AA ++L++Y +M
Sbjct: 123 DKVAASLILQQYLNM 137
>gi|161506351|ref|YP_001573463.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. arizonae serovar 62:z4,z23:- str. RSK2980]
gi|189046104|sp|A9MQS7.1|RUVX_SALAR RecName: Full=Putative Holliday junction resolvase
gi|160867698|gb|ABX24321.1| hypothetical protein SARI_04548 [Salmonella enterica subsp.
arizonae serovar 62:z4,z23:-]
Length = 138
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|421845267|ref|ZP_16278422.1| Holliday junction resolvase-like protein [Citrobacter freundii ATCC
8090 = MTCC 1658]
gi|411773588|gb|EKS57133.1| Holliday junction resolvase-like protein [Citrobacter freundii ATCC
8090 = MTCC 1658]
gi|455642805|gb|EMF21956.1| Holliday junction resolvase-like protein [Citrobacter freundii GTC
09479]
Length = 138
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLSFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|365842048|ref|ZP_09383087.1| RNAse H domain protein, YqgF family [Flavonifractor plautii ATCC
29863]
gi|364576411|gb|EHM53737.1| RNAse H domain protein, YqgF family [Flavonifractor plautii ATCC
29863]
Length = 138
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+ +D G +RTG+A+S G TV++ R E + + L +A+ DE ++G P++
Sbjct: 1 MAIDYGDARTGVAISDPTGLLAGYTTVIQSRKEGVVAEELARLAKEHSVDELVMGFPRNM 60
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P++ R+ A RL G + L DE RT+ EA + G + D
Sbjct: 61 DGTEGPRAELYRAFAARLEEVC---GLKPVLWDERRTTVEAHGILHASGKRMKQHKKTVD 117
Query: 183 AYAAVILLERYFS 195
A AA ++LE Y +
Sbjct: 118 AVAATLILEGYLT 130
>gi|343085144|ref|YP_004774439.1| Holliday junction resolvase [Cyclobacterium marinum DSM 745]
gi|342353678|gb|AEL26208.1| Holliday junction resolvase [Cyclobacterium marinum DSM 745]
Length = 137
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 68/141 (48%), Gaps = 17/141 (12%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQR----EETDEFII 116
G L +DLG RTGLA++ + PL + QLLE +R EE ++
Sbjct: 2 GRVLAIDLGTKRTGLAVTDPLMIVASPLETIPTH------QLLEYLKRYTNSEEVSTIVL 55
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
G PKS DG+ T + V ++ +L + V L+DE TS A+ MINMG K
Sbjct: 56 GWPKSLDGTATNMTQPVLALEKKL--KKTFPAIPVELVDERFTSKMAMQSMINMGSKKKD 113
Query: 177 RQTKT---DAYAAVILLERYF 194
R+ K D +A I+L+ Y
Sbjct: 114 RKEKAGNLDKISAAIILQTYL 134
>gi|425423799|ref|ZP_18804962.1| putative Holliday junction resolvase [Escherichia coli 0.1288]
gi|432366415|ref|ZP_19609533.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE10]
gi|432451124|ref|ZP_19693382.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE193]
gi|433034807|ref|ZP_20222508.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE112]
gi|408342662|gb|EKJ57089.1| putative Holliday junction resolvase [Escherichia coli 0.1288]
gi|430891754|gb|ELC14275.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE10]
gi|430978405|gb|ELC95216.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE193]
gi|431548346|gb|ELI22628.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE112]
Length = 138
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVDVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|15803488|ref|NP_289521.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. EDL933]
gi|15833079|ref|NP_311852.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. Sakai]
gi|168747559|ref|ZP_02772581.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4113]
gi|168753901|ref|ZP_02778908.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4401]
gi|168760091|ref|ZP_02785098.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4501]
gi|168766956|ref|ZP_02791963.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4486]
gi|168773412|ref|ZP_02798419.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4196]
gi|168781808|ref|ZP_02806815.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4076]
gi|168785807|ref|ZP_02810814.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC869]
gi|168797524|ref|ZP_02822531.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC508]
gi|195937087|ref|ZP_03082469.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. EC4024]
gi|208805896|ref|ZP_03248233.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4206]
gi|208811883|ref|ZP_03253212.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4045]
gi|208820347|ref|ZP_03260667.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4042]
gi|209396593|ref|YP_002272429.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. EC4115]
gi|217327641|ref|ZP_03443724.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
TW14588]
gi|254794901|ref|YP_003079738.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. TW14359]
gi|261226261|ref|ZP_05940542.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
str. FRIK2000]
gi|261256481|ref|ZP_05949014.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
str. FRIK966]
gi|291284270|ref|YP_003501088.1| Holliday junction resolvase [Escherichia coli O55:H7 str. CB9615]
gi|387508302|ref|YP_006160558.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
str. RM12579]
gi|387884140|ref|YP_006314442.1| Holliday junction resolvase-like protein [Escherichia coli
Xuzhou21]
gi|416314429|ref|ZP_11658664.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
1044]
gi|416322117|ref|ZP_11663965.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC1212]
gi|416327858|ref|ZP_11667778.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
1125]
gi|416777056|ref|ZP_11875090.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. G5101]
gi|416788516|ref|ZP_11880015.1| Holliday junction resolvase-like protein [Escherichia coli O157:H-
str. 493-89]
gi|416800503|ref|ZP_11884927.1| Holliday junction resolvase-like protein [Escherichia coli O157:H-
str. H 2687]
gi|416811066|ref|ZP_11889691.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
str. 3256-97]
gi|416821756|ref|ZP_11894341.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
str. USDA 5905]
gi|416832148|ref|ZP_11899438.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. LSU-61]
gi|419046947|ref|ZP_13593882.1| hypothetical protein ECDEC3A_3847 [Escherichia coli DEC3A]
gi|419052710|ref|ZP_13599577.1| hypothetical protein ECDEC3B_4019 [Escherichia coli DEC3B]
gi|419058705|ref|ZP_13605508.1| hypothetical protein ECDEC3C_4302 [Escherichia coli DEC3C]
gi|419064201|ref|ZP_13610924.1| hypothetical protein ECDEC3D_4006 [Escherichia coli DEC3D]
gi|419071148|ref|ZP_13616763.1| hypothetical protein ECDEC3E_4246 [Escherichia coli DEC3E]
gi|419077281|ref|ZP_13622784.1| hypothetical protein ECDEC3F_4155 [Escherichia coli DEC3F]
gi|419082173|ref|ZP_13627620.1| hypothetical protein ECDEC4A_3799 [Escherichia coli DEC4A]
gi|419088012|ref|ZP_13633365.1| hypothetical protein ECDEC4B_3954 [Escherichia coli DEC4B]
gi|419093660|ref|ZP_13638942.1| hypothetical protein ECDEC4C_3877 [Escherichia coli DEC4C]
gi|419099985|ref|ZP_13645178.1| hypothetical protein ECDEC4D_3797 [Escherichia coli DEC4D]
gi|419105518|ref|ZP_13650645.1| hypothetical protein ECDEC4E_3847 [Escherichia coli DEC4E]
gi|419110983|ref|ZP_13656037.1| hypothetical protein ECDEC4F_3816 [Escherichia coli DEC4F]
gi|419116344|ref|ZP_13661359.1| hypothetical protein ECDEC5A_3538 [Escherichia coli DEC5A]
gi|419122035|ref|ZP_13666981.1| hypothetical protein ECDEC5B_3868 [Escherichia coli DEC5B]
gi|419127608|ref|ZP_13672484.1| hypothetical protein ECDEC5C_3648 [Escherichia coli DEC5C]
gi|419132972|ref|ZP_13677806.1| hypothetical protein ECDEC5D_3751 [Escherichia coli DEC5D]
gi|419138121|ref|ZP_13682912.1| putative Holliday junction resolvase [Escherichia coli DEC5E]
gi|420270929|ref|ZP_14773283.1| putative Holliday junction resolvase [Escherichia coli PA22]
gi|420276988|ref|ZP_14779270.1| putative Holliday junction resolvase [Escherichia coli PA40]
gi|420282016|ref|ZP_14784249.1| putative Holliday junction resolvase [Escherichia coli TW06591]
gi|420288353|ref|ZP_14790537.1| putative Holliday junction resolvase [Escherichia coli TW10246]
gi|420293991|ref|ZP_14796106.1| putative Holliday junction resolvase [Escherichia coli TW11039]
gi|420299907|ref|ZP_14801953.1| putative Holliday junction resolvase [Escherichia coli TW09109]
gi|420305756|ref|ZP_14807746.1| putative Holliday junction resolvase [Escherichia coli TW10119]
gi|420310938|ref|ZP_14812868.1| putative Holliday junction resolvase [Escherichia coli EC1738]
gi|420316550|ref|ZP_14818423.1| putative Holliday junction resolvase [Escherichia coli EC1734]
gi|421813974|ref|ZP_16249686.1| putative Holliday junction resolvase [Escherichia coli 8.0416]
gi|421819793|ref|ZP_16255284.1| putative Holliday junction resolvase [Escherichia coli 10.0821]
gi|421825800|ref|ZP_16261155.1| putative Holliday junction resolvase [Escherichia coli FRIK920]
gi|421832498|ref|ZP_16267781.1| putative Holliday junction resolvase [Escherichia coli PA7]
gi|422836497|ref|ZP_16884541.1| Holliday junction resolvase [Escherichia coli E101]
gi|423726837|ref|ZP_17700798.1| putative Holliday junction resolvase [Escherichia coli PA31]
gi|424079094|ref|ZP_17816068.1| putative Holliday junction resolvase [Escherichia coli FDA505]
gi|424085549|ref|ZP_17822044.1| putative Holliday junction resolvase [Escherichia coli FDA517]
gi|424091961|ref|ZP_17827894.1| putative Holliday junction resolvase [Escherichia coli FRIK1996]
gi|424098609|ref|ZP_17833898.1| putative Holliday junction resolvase [Escherichia coli FRIK1985]
gi|424104835|ref|ZP_17839586.1| putative Holliday junction resolvase [Escherichia coli FRIK1990]
gi|424111486|ref|ZP_17845722.1| putative Holliday junction resolvase [Escherichia coli 93-001]
gi|424117424|ref|ZP_17851262.1| putative Holliday junction resolvase [Escherichia coli PA3]
gi|424123609|ref|ZP_17856925.1| putative Holliday junction resolvase [Escherichia coli PA5]
gi|424129764|ref|ZP_17862671.1| putative Holliday junction resolvase [Escherichia coli PA9]
gi|424136082|ref|ZP_17868537.1| putative Holliday junction resolvase [Escherichia coli PA10]
gi|424142630|ref|ZP_17874507.1| putative Holliday junction resolvase [Escherichia coli PA14]
gi|424149037|ref|ZP_17880413.1| putative Holliday junction resolvase [Escherichia coli PA15]
gi|424154870|ref|ZP_17885810.1| putative Holliday junction resolvase [Escherichia coli PA24]
gi|424252705|ref|ZP_17891371.1| putative Holliday junction resolvase [Escherichia coli PA25]
gi|424331058|ref|ZP_17897277.1| putative Holliday junction resolvase [Escherichia coli PA28]
gi|424451312|ref|ZP_17902994.1| putative Holliday junction resolvase [Escherichia coli PA32]
gi|424457504|ref|ZP_17908624.1| putative Holliday junction resolvase [Escherichia coli PA33]
gi|424463956|ref|ZP_17914354.1| putative Holliday junction resolvase [Escherichia coli PA39]
gi|424470271|ref|ZP_17920090.1| putative Holliday junction resolvase [Escherichia coli PA41]
gi|424476784|ref|ZP_17926102.1| putative Holliday junction resolvase [Escherichia coli PA42]
gi|424482547|ref|ZP_17931526.1| putative Holliday junction resolvase [Escherichia coli TW07945]
gi|424488716|ref|ZP_17937271.1| putative Holliday junction resolvase [Escherichia coli TW09098]
gi|424495330|ref|ZP_17942987.1| putative Holliday junction resolvase [Escherichia coli TW09195]
gi|424502076|ref|ZP_17948967.1| putative Holliday junction resolvase [Escherichia coli EC4203]
gi|424508322|ref|ZP_17954716.1| putative Holliday junction resolvase [Escherichia coli EC4196]
gi|424515667|ref|ZP_17960317.1| putative Holliday junction resolvase [Escherichia coli TW14313]
gi|424521876|ref|ZP_17965996.1| putative Holliday junction resolvase [Escherichia coli TW14301]
gi|424527756|ref|ZP_17971473.1| putative Holliday junction resolvase [Escherichia coli EC4421]
gi|424533909|ref|ZP_17977257.1| putative Holliday junction resolvase [Escherichia coli EC4422]
gi|424539961|ref|ZP_17982905.1| putative Holliday junction resolvase [Escherichia coli EC4013]
gi|424546074|ref|ZP_17988454.1| putative Holliday junction resolvase [Escherichia coli EC4402]
gi|424552303|ref|ZP_17994152.1| putative Holliday junction resolvase [Escherichia coli EC4439]
gi|424558483|ref|ZP_17999896.1| putative Holliday junction resolvase [Escherichia coli EC4436]
gi|424564821|ref|ZP_18005825.1| putative Holliday junction resolvase [Escherichia coli EC4437]
gi|424570963|ref|ZP_18011513.1| putative Holliday junction resolvase [Escherichia coli EC4448]
gi|424577121|ref|ZP_18017179.1| putative Holliday junction resolvase [Escherichia coli EC1845]
gi|424582941|ref|ZP_18022588.1| putative Holliday junction resolvase [Escherichia coli EC1863]
gi|425099615|ref|ZP_18502347.1| putative Holliday junction resolvase [Escherichia coli 3.4870]
gi|425105709|ref|ZP_18508028.1| putative Holliday junction resolvase [Escherichia coli 5.2239]
gi|425111726|ref|ZP_18513647.1| putative Holliday junction resolvase [Escherichia coli 6.0172]
gi|425127645|ref|ZP_18528814.1| putative Holliday junction resolvase [Escherichia coli 8.0586]
gi|425133382|ref|ZP_18534232.1| putative Holliday junction resolvase [Escherichia coli 8.2524]
gi|425139967|ref|ZP_18540348.1| putative Holliday junction resolvase [Escherichia coli 10.0833]
gi|425145676|ref|ZP_18545673.1| putative Holliday junction resolvase [Escherichia coli 10.0869]
gi|425151791|ref|ZP_18551406.1| putative Holliday junction resolvase [Escherichia coli 88.0221]
gi|425157664|ref|ZP_18556928.1| putative Holliday junction resolvase [Escherichia coli PA34]
gi|425164014|ref|ZP_18562901.1| putative Holliday junction resolvase [Escherichia coli FDA506]
gi|425169757|ref|ZP_18568231.1| putative Holliday junction resolvase [Escherichia coli FDA507]
gi|425175820|ref|ZP_18573940.1| putative Holliday junction resolvase [Escherichia coli FDA504]
gi|425181859|ref|ZP_18579555.1| putative Holliday junction resolvase [Escherichia coli FRIK1999]
gi|425188122|ref|ZP_18585397.1| putative Holliday junction resolvase [Escherichia coli FRIK1997]
gi|425194893|ref|ZP_18591662.1| putative Holliday junction resolvase [Escherichia coli NE1487]
gi|425201362|ref|ZP_18597571.1| putative Holliday junction resolvase [Escherichia coli NE037]
gi|425207753|ref|ZP_18603550.1| putative Holliday junction resolvase [Escherichia coli FRIK2001]
gi|425213506|ref|ZP_18608908.1| putative Holliday junction resolvase [Escherichia coli PA4]
gi|425219628|ref|ZP_18614592.1| putative Holliday junction resolvase [Escherichia coli PA23]
gi|425226180|ref|ZP_18620648.1| putative Holliday junction resolvase [Escherichia coli PA49]
gi|425232439|ref|ZP_18626480.1| putative Holliday junction resolvase [Escherichia coli PA45]
gi|425238362|ref|ZP_18632082.1| putative Holliday junction resolvase [Escherichia coli TT12B]
gi|425244600|ref|ZP_18637906.1| putative Holliday junction resolvase [Escherichia coli MA6]
gi|425250736|ref|ZP_18643678.1| putative Holliday junction resolvase [Escherichia coli 5905]
gi|425256571|ref|ZP_18649086.1| putative Holliday junction resolvase [Escherichia coli CB7326]
gi|425262826|ref|ZP_18654830.1| putative Holliday junction resolvase [Escherichia coli EC96038]
gi|425268827|ref|ZP_18660457.1| putative Holliday junction resolvase [Escherichia coli 5412]
gi|425296273|ref|ZP_18686450.1| putative Holliday junction resolvase [Escherichia coli PA38]
gi|425312965|ref|ZP_18702146.1| putative Holliday junction resolvase [Escherichia coli EC1735]
gi|425318952|ref|ZP_18707742.1| putative Holliday junction resolvase [Escherichia coli EC1736]
gi|425325035|ref|ZP_18713397.1| putative Holliday junction resolvase [Escherichia coli EC1737]
gi|425331403|ref|ZP_18719245.1| putative Holliday junction resolvase [Escherichia coli EC1846]
gi|425337581|ref|ZP_18724941.1| putative Holliday junction resolvase [Escherichia coli EC1847]
gi|425343903|ref|ZP_18730794.1| putative Holliday junction resolvase [Escherichia coli EC1848]
gi|425349709|ref|ZP_18736178.1| putative Holliday junction resolvase [Escherichia coli EC1849]
gi|425356008|ref|ZP_18742076.1| putative Holliday junction resolvase [Escherichia coli EC1850]
gi|425361971|ref|ZP_18747619.1| putative Holliday junction resolvase [Escherichia coli EC1856]
gi|425368174|ref|ZP_18753308.1| putative Holliday junction resolvase [Escherichia coli EC1862]
gi|425374500|ref|ZP_18759144.1| putative Holliday junction resolvase [Escherichia coli EC1864]
gi|425387394|ref|ZP_18770953.1| putative Holliday junction resolvase [Escherichia coli EC1866]
gi|425394046|ref|ZP_18777155.1| putative Holliday junction resolvase [Escherichia coli EC1868]
gi|425400181|ref|ZP_18782888.1| putative Holliday junction resolvase [Escherichia coli EC1869]
gi|425406271|ref|ZP_18788494.1| putative Holliday junction resolvase [Escherichia coli EC1870]
gi|425412655|ref|ZP_18794419.1| putative Holliday junction resolvase [Escherichia coli NE098]
gi|425418979|ref|ZP_18800250.1| putative Holliday junction resolvase [Escherichia coli FRIK523]
gi|425430242|ref|ZP_18810854.1| putative Holliday junction resolvase [Escherichia coli 0.1304]
gi|428948674|ref|ZP_19020954.1| putative Holliday junction resolvase [Escherichia coli 88.1467]
gi|428954755|ref|ZP_19026553.1| putative Holliday junction resolvase [Escherichia coli 88.1042]
gi|428960744|ref|ZP_19032040.1| putative Holliday junction resolvase [Escherichia coli 89.0511]
gi|428967358|ref|ZP_19038071.1| putative Holliday junction resolvase [Escherichia coli 90.0091]
gi|428973053|ref|ZP_19043378.1| putative Holliday junction resolvase [Escherichia coli 90.0039]
gi|428979276|ref|ZP_19049099.1| putative Holliday junction resolvase [Escherichia coli 90.2281]
gi|428985255|ref|ZP_19054650.1| putative Holliday junction resolvase [Escherichia coli 93.0055]
gi|428991469|ref|ZP_19060460.1| putative Holliday junction resolvase [Escherichia coli 93.0056]
gi|428997350|ref|ZP_19065947.1| putative Holliday junction resolvase [Escherichia coli 94.0618]
gi|429003631|ref|ZP_19071733.1| putative Holliday junction resolvase [Escherichia coli 95.0183]
gi|429009715|ref|ZP_19077186.1| putative Holliday junction resolvase [Escherichia coli 95.1288]
gi|429016249|ref|ZP_19083134.1| putative Holliday junction resolvase [Escherichia coli 95.0943]
gi|429022074|ref|ZP_19088598.1| putative Holliday junction resolvase [Escherichia coli 96.0428]
gi|429028139|ref|ZP_19094138.1| putative Holliday junction resolvase [Escherichia coli 96.0427]
gi|429034323|ref|ZP_19099847.1| putative Holliday junction resolvase [Escherichia coli 96.0939]
gi|429040405|ref|ZP_19105508.1| putative Holliday junction resolvase [Escherichia coli 96.0932]
gi|429046017|ref|ZP_19110731.1| putative Holliday junction resolvase [Escherichia coli 96.0107]
gi|429051683|ref|ZP_19116250.1| putative Holliday junction resolvase [Escherichia coli 97.0003]
gi|429057105|ref|ZP_19121408.1| putative Holliday junction resolvase [Escherichia coli 97.1742]
gi|429062608|ref|ZP_19126606.1| putative Holliday junction resolvase [Escherichia coli 97.0007]
gi|429068865|ref|ZP_19132324.1| putative Holliday junction resolvase [Escherichia coli 99.0672]
gi|429074783|ref|ZP_19138035.1| putative Holliday junction resolvase [Escherichia coli 99.0678]
gi|429080014|ref|ZP_19143149.1| putative Holliday junction resolvase [Escherichia coli 99.0713]
gi|429828037|ref|ZP_19359066.1| putative Holliday junction resolvase [Escherichia coli 96.0109]
gi|429834408|ref|ZP_19364725.1| putative Holliday junction resolvase [Escherichia coli 97.0010]
gi|444926498|ref|ZP_21245780.1| putative Holliday junction resolvase [Escherichia coli 09BKT078844]
gi|444932256|ref|ZP_21251284.1| putative Holliday junction resolvase [Escherichia coli 99.0814]
gi|444937679|ref|ZP_21256446.1| putative Holliday junction resolvase [Escherichia coli 99.0815]
gi|444944645|ref|ZP_21263111.1| putative Holliday junction resolvase [Escherichia coli 99.0816]
gi|444950059|ref|ZP_21268335.1| putative Holliday junction resolvase [Escherichia coli 99.0839]
gi|444954351|ref|ZP_21272436.1| putative Holliday junction resolvase [Escherichia coli 99.0848]
gi|444959860|ref|ZP_21277703.1| putative Holliday junction resolvase [Escherichia coli 99.1753]
gi|444965029|ref|ZP_21282620.1| putative Holliday junction resolvase [Escherichia coli 99.1775]
gi|444971015|ref|ZP_21288371.1| putative Holliday junction resolvase [Escherichia coli 99.1793]
gi|444976285|ref|ZP_21293395.1| putative Holliday junction resolvase [Escherichia coli 99.1805]
gi|444981691|ref|ZP_21298601.1| putative Holliday junction resolvase [Escherichia coli ATCC 700728]
gi|444987080|ref|ZP_21303859.1| putative Holliday junction resolvase [Escherichia coli PA11]
gi|444992391|ref|ZP_21309033.1| putative Holliday junction resolvase [Escherichia coli PA19]
gi|444997698|ref|ZP_21314195.1| putative Holliday junction resolvase [Escherichia coli PA13]
gi|445003271|ref|ZP_21319660.1| putative Holliday junction resolvase [Escherichia coli PA2]
gi|445009918|ref|ZP_21326129.1| putative Holliday junction resolvase [Escherichia coli PA47]
gi|445013807|ref|ZP_21329913.1| putative Holliday junction resolvase [Escherichia coli PA48]
gi|445019707|ref|ZP_21335670.1| putative Holliday junction resolvase [Escherichia coli PA8]
gi|445025091|ref|ZP_21340913.1| putative Holliday junction resolvase [Escherichia coli 7.1982]
gi|445030512|ref|ZP_21346183.1| putative Holliday junction resolvase [Escherichia coli 99.1781]
gi|445035935|ref|ZP_21351465.1| putative Holliday junction resolvase [Escherichia coli 99.1762]
gi|445042912|ref|ZP_21358266.1| putative Holliday junction resolvase [Escherichia coli PA35]
gi|445046791|ref|ZP_21362041.1| putative Holliday junction resolvase [Escherichia coli 3.4880]
gi|445052332|ref|ZP_21367369.1| putative Holliday junction resolvase [Escherichia coli 95.0083]
gi|445058062|ref|ZP_21372920.1| putative Holliday junction resolvase [Escherichia coli 99.0670]
gi|452970723|ref|ZP_21968950.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. EC4009]
gi|32130044|sp|Q8XCV0.1|RUVX_ECO57 RecName: Full=Putative Holliday junction resolvase
gi|226725516|sp|B5YQE7.1|RUVX_ECO5E RecName: Full=Putative Holliday junction resolvase
gi|12517495|gb|AAG58080.1|AE005525_6 orf, hypothetical protein [Escherichia coli O157:H7 str. EDL933]
gi|13363297|dbj|BAB37248.1| hypothetical protein [Escherichia coli O157:H7 str. Sakai]
gi|187770925|gb|EDU34769.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4196]
gi|188017800|gb|EDU55922.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4113]
gi|189000577|gb|EDU69563.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4076]
gi|189358781|gb|EDU77200.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4401]
gi|189363715|gb|EDU82134.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4486]
gi|189369432|gb|EDU87848.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4501]
gi|189374231|gb|EDU92647.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC869]
gi|189379713|gb|EDU98129.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC508]
gi|208725697|gb|EDZ75298.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4206]
gi|208733160|gb|EDZ81847.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4045]
gi|208740470|gb|EDZ88152.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4042]
gi|209157993|gb|ACI35426.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC4115]
gi|209760068|gb|ACI78346.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760070|gb|ACI78347.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760072|gb|ACI78348.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760074|gb|ACI78349.1| hypothetical protein ECs3825 [Escherichia coli]
gi|209760076|gb|ACI78350.1| hypothetical protein ECs3825 [Escherichia coli]
gi|217320008|gb|EEC28433.1| putative Holliday junction resolvase [Escherichia coli O157:H7 str.
TW14588]
gi|254594301|gb|ACT73662.1| predicted Holliday junction resolvase [Escherichia coli O157:H7
str. TW14359]
gi|290764143|gb|ADD58104.1| Putative Holliday junction resolvase [Escherichia coli O55:H7 str.
CB9615]
gi|320189297|gb|EFW63956.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
EC1212]
gi|320640595|gb|EFX10134.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. G5101]
gi|320645842|gb|EFX14827.1| Holliday junction resolvase-like protein [Escherichia coli O157:H-
str. 493-89]
gi|320651142|gb|EFX19582.1| Holliday junction resolvase-like protein [Escherichia coli O157:H-
str. H 2687]
gi|320656638|gb|EFX24534.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
str. 3256-97 TW 07815]
gi|320662157|gb|EFX29558.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
str. USDA 5905]
gi|320667233|gb|EFX34196.1| Holliday junction resolvase-like protein [Escherichia coli O157:H7
str. LSU-61]
gi|326338964|gb|EGD62779.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
1044]
gi|326343155|gb|EGD66923.1| Putative Holliday junction resolvase [Escherichia coli O157:H7 str.
1125]
gi|371608703|gb|EHN97254.1| Holliday junction resolvase [Escherichia coli E101]
gi|374360296|gb|AEZ42003.1| Holliday junction resolvase-like protein [Escherichia coli O55:H7
str. RM12579]
gi|377891557|gb|EHU56009.1| hypothetical protein ECDEC3B_4019 [Escherichia coli DEC3B]
gi|377892550|gb|EHU56996.1| hypothetical protein ECDEC3A_3847 [Escherichia coli DEC3A]
gi|377904299|gb|EHU68586.1| hypothetical protein ECDEC3C_4302 [Escherichia coli DEC3C]
gi|377908230|gb|EHU72448.1| hypothetical protein ECDEC3D_4006 [Escherichia coli DEC3D]
gi|377910605|gb|EHU74793.1| hypothetical protein ECDEC3E_4246 [Escherichia coli DEC3E]
gi|377919359|gb|EHU83402.1| hypothetical protein ECDEC3F_4155 [Escherichia coli DEC3F]
gi|377925144|gb|EHU89085.1| hypothetical protein ECDEC4A_3799 [Escherichia coli DEC4A]
gi|377929286|gb|EHU93186.1| hypothetical protein ECDEC4B_3954 [Escherichia coli DEC4B]
gi|377939941|gb|EHV03695.1| hypothetical protein ECDEC4D_3797 [Escherichia coli DEC4D]
gi|377940773|gb|EHV04519.1| hypothetical protein ECDEC4C_3877 [Escherichia coli DEC4C]
gi|377946698|gb|EHV10378.1| hypothetical protein ECDEC4E_3847 [Escherichia coli DEC4E]
gi|377956552|gb|EHV20102.1| hypothetical protein ECDEC4F_3816 [Escherichia coli DEC4F]
gi|377959696|gb|EHV23192.1| hypothetical protein ECDEC5A_3538 [Escherichia coli DEC5A]
gi|377964293|gb|EHV27730.1| hypothetical protein ECDEC5B_3868 [Escherichia coli DEC5B]
gi|377972018|gb|EHV35369.1| hypothetical protein ECDEC5C_3648 [Escherichia coli DEC5C]
gi|377974397|gb|EHV37725.1| hypothetical protein ECDEC5D_3751 [Escherichia coli DEC5D]
gi|377982541|gb|EHV45793.1| putative Holliday junction resolvase [Escherichia coli DEC5E]
gi|386797598|gb|AFJ30632.1| Holliday junction resolvase-like protein [Escherichia coli
Xuzhou21]
gi|390639738|gb|EIN19208.1| putative Holliday junction resolvase [Escherichia coli FRIK1996]
gi|390641569|gb|EIN20994.1| putative Holliday junction resolvase [Escherichia coli FDA517]
gi|390641979|gb|EIN21402.1| putative Holliday junction resolvase [Escherichia coli FDA505]
gi|390659404|gb|EIN37171.1| putative Holliday junction resolvase [Escherichia coli 93-001]
gi|390659649|gb|EIN37404.1| putative Holliday junction resolvase [Escherichia coli FRIK1985]
gi|390662112|gb|EIN39739.1| putative Holliday junction resolvase [Escherichia coli FRIK1990]
gi|390675855|gb|EIN51978.1| putative Holliday junction resolvase [Escherichia coli PA3]
gi|390679359|gb|EIN55271.1| putative Holliday junction resolvase [Escherichia coli PA5]
gi|390682864|gb|EIN58607.1| putative Holliday junction resolvase [Escherichia coli PA9]
gi|390694584|gb|EIN69156.1| putative Holliday junction resolvase [Escherichia coli PA10]
gi|390699408|gb|EIN73758.1| putative Holliday junction resolvase [Escherichia coli PA14]
gi|390699684|gb|EIN74027.1| putative Holliday junction resolvase [Escherichia coli PA15]
gi|390713265|gb|EIN86203.1| putative Holliday junction resolvase [Escherichia coli PA22]
gi|390721019|gb|EIN93720.1| putative Holliday junction resolvase [Escherichia coli PA25]
gi|390722385|gb|EIN95056.1| putative Holliday junction resolvase [Escherichia coli PA24]
gi|390726095|gb|EIN98572.1| putative Holliday junction resolvase [Escherichia coli PA28]
gi|390739965|gb|EIO11123.1| putative Holliday junction resolvase [Escherichia coli PA31]
gi|390740599|gb|EIO11719.1| putative Holliday junction resolvase [Escherichia coli PA32]
gi|390743977|gb|EIO14922.1| putative Holliday junction resolvase [Escherichia coli PA33]
gi|390757336|gb|EIO26825.1| putative Holliday junction resolvase [Escherichia coli PA40]
gi|390765412|gb|EIO34581.1| putative Holliday junction resolvase [Escherichia coli PA39]
gi|390765638|gb|EIO34801.1| putative Holliday junction resolvase [Escherichia coli PA41]
gi|390767345|gb|EIO36428.1| putative Holliday junction resolvase [Escherichia coli PA42]
gi|390780177|gb|EIO47877.1| putative Holliday junction resolvase [Escherichia coli TW06591]
gi|390788155|gb|EIO55624.1| putative Holliday junction resolvase [Escherichia coli TW07945]
gi|390788915|gb|EIO56380.1| putative Holliday junction resolvase [Escherichia coli TW10246]
gi|390795605|gb|EIO62889.1| putative Holliday junction resolvase [Escherichia coli TW11039]
gi|390803467|gb|EIO70473.1| putative Holliday junction resolvase [Escherichia coli TW09098]
gi|390806315|gb|EIO73237.1| putative Holliday junction resolvase [Escherichia coli TW09109]
gi|390815021|gb|EIO81570.1| putative Holliday junction resolvase [Escherichia coli TW10119]
gi|390824463|gb|EIO90444.1| putative Holliday junction resolvase [Escherichia coli EC4203]
gi|390827005|gb|EIO92799.1| putative Holliday junction resolvase [Escherichia coli TW09195]
gi|390829436|gb|EIO95037.1| putative Holliday junction resolvase [Escherichia coli EC4196]
gi|390844185|gb|EIP07937.1| putative Holliday junction resolvase [Escherichia coli TW14313]
gi|390844839|gb|EIP08538.1| putative Holliday junction resolvase [Escherichia coli TW14301]
gi|390849831|gb|EIP13253.1| putative Holliday junction resolvase [Escherichia coli EC4421]
gi|390859966|gb|EIP22294.1| putative Holliday junction resolvase [Escherichia coli EC4422]
gi|390864599|gb|EIP26707.1| putative Holliday junction resolvase [Escherichia coli EC4013]
gi|390868957|gb|EIP30665.1| putative Holliday junction resolvase [Escherichia coli EC4402]
gi|390877187|gb|EIP38138.1| putative Holliday junction resolvase [Escherichia coli EC4439]
gi|390882629|gb|EIP43130.1| putative Holliday junction resolvase [Escherichia coli EC4436]
gi|390892345|gb|EIP51933.1| putative Holliday junction resolvase [Escherichia coli EC4437]
gi|390894513|gb|EIP54030.1| putative Holliday junction resolvase [Escherichia coli EC4448]
gi|390899133|gb|EIP58381.1| putative Holliday junction resolvase [Escherichia coli EC1738]
gi|390906807|gb|EIP65676.1| putative Holliday junction resolvase [Escherichia coli EC1734]
gi|390918067|gb|EIP76483.1| putative Holliday junction resolvase [Escherichia coli EC1863]
gi|390919067|gb|EIP77441.1| putative Holliday junction resolvase [Escherichia coli EC1845]
gi|408063461|gb|EKG97953.1| putative Holliday junction resolvase [Escherichia coli PA7]
gi|408065893|gb|EKH00363.1| putative Holliday junction resolvase [Escherichia coli FRIK920]
gi|408069092|gb|EKH03506.1| putative Holliday junction resolvase [Escherichia coli PA34]
gi|408078353|gb|EKH12526.1| putative Holliday junction resolvase [Escherichia coli FDA506]
gi|408081735|gb|EKH15742.1| putative Holliday junction resolvase [Escherichia coli FDA507]
gi|408090415|gb|EKH23692.1| putative Holliday junction resolvase [Escherichia coli FDA504]
gi|408096478|gb|EKH29418.1| putative Holliday junction resolvase [Escherichia coli FRIK1999]
gi|408103239|gb|EKH35624.1| putative Holliday junction resolvase [Escherichia coli FRIK1997]
gi|408107640|gb|EKH39716.1| putative Holliday junction resolvase [Escherichia coli NE1487]
gi|408114393|gb|EKH45955.1| putative Holliday junction resolvase [Escherichia coli NE037]
gi|408120104|gb|EKH51134.1| putative Holliday junction resolvase [Escherichia coli FRIK2001]
gi|408126359|gb|EKH56919.1| putative Holliday junction resolvase [Escherichia coli PA4]
gi|408136399|gb|EKH66146.1| putative Holliday junction resolvase [Escherichia coli PA23]
gi|408138996|gb|EKH68630.1| putative Holliday junction resolvase [Escherichia coli PA49]
gi|408145515|gb|EKH74693.1| putative Holliday junction resolvase [Escherichia coli PA45]
gi|408154111|gb|EKH82481.1| putative Holliday junction resolvase [Escherichia coli TT12B]
gi|408159076|gb|EKH87179.1| putative Holliday junction resolvase [Escherichia coli MA6]
gi|408162965|gb|EKH90852.1| putative Holliday junction resolvase [Escherichia coli 5905]
gi|408172147|gb|EKH99234.1| putative Holliday junction resolvase [Escherichia coli CB7326]
gi|408178727|gb|EKI05424.1| putative Holliday junction resolvase [Escherichia coli EC96038]
gi|408181894|gb|EKI08436.1| putative Holliday junction resolvase [Escherichia coli 5412]
gi|408215729|gb|EKI40101.1| putative Holliday junction resolvase [Escherichia coli PA38]
gi|408225726|gb|EKI49392.1| putative Holliday junction resolvase [Escherichia coli EC1735]
gi|408237027|gb|EKI59894.1| putative Holliday junction resolvase [Escherichia coli EC1736]
gi|408240568|gb|EKI63243.1| putative Holliday junction resolvase [Escherichia coli EC1737]
gi|408245337|gb|EKI67729.1| putative Holliday junction resolvase [Escherichia coli EC1846]
gi|408254071|gb|EKI75631.1| putative Holliday junction resolvase [Escherichia coli EC1847]
gi|408257833|gb|EKI79130.1| putative Holliday junction resolvase [Escherichia coli EC1848]
gi|408264375|gb|EKI85175.1| putative Holliday junction resolvase [Escherichia coli EC1849]
gi|408273153|gb|EKI93219.1| putative Holliday junction resolvase [Escherichia coli EC1850]
gi|408275894|gb|EKI95834.1| putative Holliday junction resolvase [Escherichia coli EC1856]
gi|408284677|gb|EKJ03769.1| putative Holliday junction resolvase [Escherichia coli EC1862]
gi|408290274|gb|EKJ09011.1| putative Holliday junction resolvase [Escherichia coli EC1864]
gi|408306406|gb|EKJ23772.1| putative Holliday junction resolvase [Escherichia coli EC1868]
gi|408307124|gb|EKJ24486.1| putative Holliday junction resolvase [Escherichia coli EC1866]
gi|408317909|gb|EKJ34139.1| putative Holliday junction resolvase [Escherichia coli EC1869]
gi|408323969|gb|EKJ39930.1| putative Holliday junction resolvase [Escherichia coli EC1870]
gi|408325263|gb|EKJ41147.1| putative Holliday junction resolvase [Escherichia coli NE098]
gi|408335723|gb|EKJ50561.1| putative Holliday junction resolvase [Escherichia coli FRIK523]
gi|408345480|gb|EKJ59822.1| putative Holliday junction resolvase [Escherichia coli 0.1304]
gi|408548240|gb|EKK25625.1| putative Holliday junction resolvase [Escherichia coli 3.4870]
gi|408548557|gb|EKK25941.1| putative Holliday junction resolvase [Escherichia coli 5.2239]
gi|408549715|gb|EKK27075.1| putative Holliday junction resolvase [Escherichia coli 6.0172]
gi|408567336|gb|EKK43396.1| putative Holliday junction resolvase [Escherichia coli 8.0586]
gi|408577690|gb|EKK53249.1| putative Holliday junction resolvase [Escherichia coli 10.0833]
gi|408580258|gb|EKK55676.1| putative Holliday junction resolvase [Escherichia coli 8.2524]
gi|408590335|gb|EKK64817.1| putative Holliday junction resolvase [Escherichia coli 10.0869]
gi|408595581|gb|EKK69816.1| putative Holliday junction resolvase [Escherichia coli 88.0221]
gi|408600341|gb|EKK74200.1| putative Holliday junction resolvase [Escherichia coli 8.0416]
gi|408611788|gb|EKK85148.1| putative Holliday junction resolvase [Escherichia coli 10.0821]
gi|427203502|gb|EKV73807.1| putative Holliday junction resolvase [Escherichia coli 88.1042]
gi|427204638|gb|EKV74913.1| putative Holliday junction resolvase [Escherichia coli 89.0511]
gi|427207231|gb|EKV77409.1| putative Holliday junction resolvase [Escherichia coli 88.1467]
gi|427219698|gb|EKV88659.1| putative Holliday junction resolvase [Escherichia coli 90.0091]
gi|427223086|gb|EKV91845.1| putative Holliday junction resolvase [Escherichia coli 90.2281]
gi|427226055|gb|EKV94663.1| putative Holliday junction resolvase [Escherichia coli 90.0039]
gi|427240634|gb|EKW08087.1| putative Holliday junction resolvase [Escherichia coli 93.0056]
gi|427240718|gb|EKW08170.1| putative Holliday junction resolvase [Escherichia coli 93.0055]
gi|427244515|gb|EKW11834.1| putative Holliday junction resolvase [Escherichia coli 94.0618]
gi|427258874|gb|EKW24950.1| putative Holliday junction resolvase [Escherichia coli 95.0183]
gi|427259956|gb|EKW25976.1| putative Holliday junction resolvase [Escherichia coli 95.0943]
gi|427262609|gb|EKW28473.1| putative Holliday junction resolvase [Escherichia coli 95.1288]
gi|427275193|gb|EKW39816.1| putative Holliday junction resolvase [Escherichia coli 96.0428]
gi|427277884|gb|EKW42394.1| putative Holliday junction resolvase [Escherichia coli 96.0427]
gi|427282067|gb|EKW46347.1| putative Holliday junction resolvase [Escherichia coli 96.0939]
gi|427290551|gb|EKW54022.1| putative Holliday junction resolvase [Escherichia coli 96.0932]
gi|427297758|gb|EKW60782.1| putative Holliday junction resolvase [Escherichia coli 96.0107]
gi|427299435|gb|EKW62409.1| putative Holliday junction resolvase [Escherichia coli 97.0003]
gi|427310600|gb|EKW72843.1| putative Holliday junction resolvase [Escherichia coli 97.1742]
gi|427313528|gb|EKW75635.1| putative Holliday junction resolvase [Escherichia coli 97.0007]
gi|427318085|gb|EKW79968.1| putative Holliday junction resolvase [Escherichia coli 99.0672]
gi|427326817|gb|EKW88224.1| putative Holliday junction resolvase [Escherichia coli 99.0678]
gi|427328312|gb|EKW89680.1| putative Holliday junction resolvase [Escherichia coli 99.0713]
gi|429252440|gb|EKY36978.1| putative Holliday junction resolvase [Escherichia coli 96.0109]
gi|429253851|gb|EKY38305.1| putative Holliday junction resolvase [Escherichia coli 97.0010]
gi|444536813|gb|ELV16806.1| putative Holliday junction resolvase [Escherichia coli 99.0814]
gi|444538373|gb|ELV18241.1| putative Holliday junction resolvase [Escherichia coli 09BKT078844]
gi|444546616|gb|ELV25316.1| putative Holliday junction resolvase [Escherichia coli 99.0815]
gi|444553540|gb|ELV31156.1| putative Holliday junction resolvase [Escherichia coli 99.0816]
gi|444554045|gb|ELV31634.1| putative Holliday junction resolvase [Escherichia coli 99.0839]
gi|444561920|gb|ELV39022.1| putative Holliday junction resolvase [Escherichia coli 99.0848]
gi|444571261|gb|ELV47749.1| putative Holliday junction resolvase [Escherichia coli 99.1753]
gi|444574739|gb|ELV51005.1| putative Holliday junction resolvase [Escherichia coli 99.1775]
gi|444578179|gb|ELV54267.1| putative Holliday junction resolvase [Escherichia coli 99.1793]
gi|444591716|gb|ELV66987.1| putative Holliday junction resolvase [Escherichia coli PA11]
gi|444592530|gb|ELV67789.1| putative Holliday junction resolvase [Escherichia coli ATCC 700728]
gi|444593121|gb|ELV68353.1| putative Holliday junction resolvase [Escherichia coli 99.1805]
gi|444605435|gb|ELV80077.1| putative Holliday junction resolvase [Escherichia coli PA13]
gi|444606217|gb|ELV80843.1| putative Holliday junction resolvase [Escherichia coli PA19]
gi|444614789|gb|ELV89015.1| putative Holliday junction resolvase [Escherichia coli PA2]
gi|444617974|gb|ELV92073.1| putative Holliday junction resolvase [Escherichia coli PA47]
gi|444622705|gb|ELV96650.1| putative Holliday junction resolvase [Escherichia coli PA48]
gi|444628906|gb|ELW02643.1| putative Holliday junction resolvase [Escherichia coli PA8]
gi|444637470|gb|ELW10844.1| putative Holliday junction resolvase [Escherichia coli 7.1982]
gi|444639963|gb|ELW13260.1| putative Holliday junction resolvase [Escherichia coli 99.1781]
gi|444644031|gb|ELW17157.1| putative Holliday junction resolvase [Escherichia coli 99.1762]
gi|444650594|gb|ELW23422.1| putative Holliday junction resolvase [Escherichia coli PA35]
gi|444659097|gb|ELW31534.1| putative Holliday junction resolvase [Escherichia coli 3.4880]
gi|444662045|gb|ELW34314.1| putative Holliday junction resolvase [Escherichia coli 95.0083]
gi|444669217|gb|ELW41215.1| putative Holliday junction resolvase [Escherichia coli 99.0670]
Length = 138
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KIDSASAVIILESYF 134
>gi|283835290|ref|ZP_06355031.1| putative Holliday junction resolvase [Citrobacter youngae ATCC
29220]
gi|291068448|gb|EFE06557.1| putative Holliday junction resolvase [Citrobacter youngae ATCC
29220]
Length = 138
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+GV +G TG A RPL +K + + L+E +E + DE I+GLP + D
Sbjct: 14 SIGVAVGQRITGTA-------RPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E P + + R A R+ R G V L DE ++ EA + G ++ + K D+
Sbjct: 67 GTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFEQGGYRALNKGKVDS 123
Query: 184 YAAVILLERYF 194
+AVI+LE YF
Sbjct: 124 ASAVIILESYF 134
>gi|387887908|ref|YP_006318206.1| putative holliday junction resolvase [Escherichia blattae DSM 4481]
gi|414594859|ref|ZP_11444492.1| putative Holliday junction resolvase [Escherichia blattae NBRC
105725]
gi|386922741|gb|AFJ45695.1| putative holliday junction resolvase [Escherichia blattae DSM 4481]
gi|403194164|dbj|GAB82144.1| putative Holliday junction resolvase [Escherichia blattae NBRC
105725]
Length = 139
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G SL D G G+A+ + RPL LK R + +E +E + D+ I+GLP
Sbjct: 4 GTSLAFDFGTKSIGVAIGQRITGTARPLHALKARDGTPDWNAVERLLKEWQPDDIIVGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DGSE P + + R A RL R G V L DE T+ EA + G ++ +
Sbjct: 64 LNMDGSEQPLTGRARKFANRLHGRF---GVSVTLHDERLTTVEARAGLFEQGGFRALDKG 120
Query: 180 KTDAYAAVILLERYF 194
D+ +AV++LE +F
Sbjct: 121 SVDSASAVVILESWF 135
>gi|365101317|ref|ZP_09331947.1| putative Holliday junction resolvase [Citrobacter freundii
4_7_47CFAA]
gi|363646867|gb|EHL86096.1| putative Holliday junction resolvase [Citrobacter freundii
4_7_47CFAA]
Length = 138
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+GV +G TG A RPL +K + + L+E +E + DE I+GLP + D
Sbjct: 14 SIGVAVGQRITGTA-------RPLPAIKAQDGTPDWSLIERLLKEWQPDEIIVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E P + + R A R+ R G V L DE ++ EA + G ++ + K D+
Sbjct: 67 GTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFEQGGYRALNKGKVDS 123
Query: 184 YAAVILLERYF 194
+AVI+LE YF
Sbjct: 124 ASAVIILESYF 134
>gi|237706398|ref|ZP_04536879.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|422356688|ref|ZP_16437361.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
110-3]
gi|422754272|ref|ZP_16808098.1| hypothetical protein ERLG_01394 [Escherichia coli H263]
gi|422840942|ref|ZP_16888912.1| Holliday junction resolvase [Escherichia coli H397]
gi|432589257|ref|ZP_19825610.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE58]
gi|432755807|ref|ZP_19990353.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE22]
gi|432779887|ref|ZP_20014108.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE59]
gi|432788879|ref|ZP_20023007.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE65]
gi|432822316|ref|ZP_20056005.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE118]
gi|432823825|ref|ZP_20057495.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE123]
gi|226899438|gb|EEH85697.1| conserved hypothetical protein [Escherichia sp. 3_2_53FAA]
gi|315289503|gb|EFU48898.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
110-3]
gi|323957327|gb|EGB53049.1| hypothetical protein ERLG_01394 [Escherichia coli H263]
gi|371605438|gb|EHN94052.1| Holliday junction resolvase [Escherichia coli H397]
gi|431118615|gb|ELE21634.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE58]
gi|431301111|gb|ELF90658.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE22]
gi|431325130|gb|ELG12518.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE59]
gi|431335879|gb|ELG23008.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE65]
gi|431366105|gb|ELG52603.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE118]
gi|431378350|gb|ELG63341.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE123]
Length = 138
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GIEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|417328640|ref|ZP_12113716.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|417367890|ref|ZP_12139631.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Hvittingfoss str. A4-620]
gi|353567302|gb|EHC32542.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Adelaide str. A4-669]
gi|353587988|gb|EHC47149.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Hvittingfoss str. A4-620]
Length = 138
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|157879567|pdb|1OVQ|A Chain A, Solution Structure Of The Hypothetical Protein Yqgf From
Escherichia Coli
Length = 138
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|417262705|ref|ZP_12050179.1| RNAse H domain protein, YqgF family [Escherichia coli 2.3916]
gi|417635977|ref|ZP_12286188.1| hypothetical protein ECSTECS1191_3921 [Escherichia coli STEC_S1191]
gi|418304509|ref|ZP_12916303.1| uncharacterized protein family protein [Escherichia coli UMNF18]
gi|339416607|gb|AEJ58279.1| uncharacterized protein family protein [Escherichia coli UMNF18]
gi|345386847|gb|EGX16680.1| hypothetical protein ECSTECS1191_3921 [Escherichia coli STEC_S1191]
gi|386224151|gb|EII46500.1| RNAse H domain protein, YqgF family [Escherichia coli 2.3916]
Length = 138
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITCTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|16130850|ref|NP_417424.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. MG1655]
gi|26249370|ref|NP_755410.1| Holliday junction resolvase-like protein [Escherichia coli CFT073]
gi|91212331|ref|YP_542317.1| Holliday junction resolvase-like protein [Escherichia coli UTI89]
gi|110643098|ref|YP_670828.1| Holliday junction resolvase-like protein [Escherichia coli 536]
gi|117625176|ref|YP_854164.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1]
gi|157162408|ref|YP_001459726.1| Holliday junction resolvase-like protein [Escherichia coli HS]
gi|170018810|ref|YP_001723764.1| Holliday junction resolvase-like protein [Escherichia coli ATCC
8739]
gi|170082501|ref|YP_001731821.1| Holliday junction resolvase-like protein [Escherichia coli str.
K-12 substr. DH10B]
gi|188491785|ref|ZP_02999055.1| putative Holliday junction resolvase [Escherichia coli 53638]
gi|191171877|ref|ZP_03033423.1| putative Holliday junction resolvase [Escherichia coli F11]
gi|218559940|ref|YP_002392853.1| Holliday junction resolvase-like protein [Escherichia coli S88]
gi|218691073|ref|YP_002399285.1| Holliday junction resolvase-like protein [Escherichia coli ED1a]
gi|218696547|ref|YP_002404214.1| Holliday junction resolvase-like protein [Escherichia coli 55989]
gi|222157639|ref|YP_002557778.1| Holliday junction resolvase [Escherichia coli LF82]
gi|238902071|ref|YP_002927867.1| Holliday junction resolvase-like protein [Escherichia coli BW2952]
gi|253772213|ref|YP_003035044.1| Holliday junction resolvase-like protein [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|293412309|ref|ZP_06655032.1| hypothetical protein ECEG_02316 [Escherichia coli B354]
gi|300824850|ref|ZP_07104953.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
119-7]
gi|300906487|ref|ZP_07124182.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1]
gi|300921290|ref|ZP_07137659.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
115-1]
gi|300940769|ref|ZP_07155315.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1]
gi|300947679|ref|ZP_07161848.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
116-1]
gi|300954205|ref|ZP_07166670.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1]
gi|300980101|ref|ZP_07174844.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1]
gi|300995470|ref|ZP_07181118.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1]
gi|301027300|ref|ZP_07190646.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1]
gi|301027726|ref|ZP_07191036.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
196-1]
gi|301049256|ref|ZP_07196229.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
185-1]
gi|301306394|ref|ZP_07212463.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1]
gi|301327365|ref|ZP_07220615.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1]
gi|301643698|ref|ZP_07243737.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
146-1]
gi|306812147|ref|ZP_07446345.1| Holliday junction resolvase-like protein [Escherichia coli NC101]
gi|312972810|ref|ZP_07786983.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|331643642|ref|ZP_08344773.1| putative Holliday junction resolvase [Escherichia coli H736]
gi|331648704|ref|ZP_08349792.1| putative Holliday junction resolvase [Escherichia coli M605]
gi|331659084|ref|ZP_08360026.1| putative Holliday junction resolvase [Escherichia coli TA206]
gi|331669692|ref|ZP_08370538.1| putative Holliday junction resolvase [Escherichia coli TA271]
gi|331678941|ref|ZP_08379615.1| putative Holliday junction resolvase [Escherichia coli H591]
gi|366159934|ref|ZP_09459796.1| Holliday junction resolvase-like protein [Escherichia sp. TW09308]
gi|386281992|ref|ZP_10059651.1| putative Holliday junction resolvase [Escherichia sp. 4_1_40B]
gi|386594319|ref|YP_006090719.1| Holliday junction resolvase YqgF [Escherichia coli DH1]
gi|386600947|ref|YP_006102453.1| hypothetical protein ECOK1_3337 [Escherichia coli IHE3034]
gi|386602993|ref|YP_006109293.1| Holliday junction resolvase-like protein [Escherichia coli UM146]
gi|386615679|ref|YP_006135345.1| hypothetical protein UMNK88_3645 [Escherichia coli UMNK88]
gi|386630699|ref|YP_006150419.1| Holliday junction resolvase-like protein [Escherichia coli str.
'clone D i2']
gi|386635619|ref|YP_006155338.1| Holliday junction resolvase-like protein [Escherichia coli str.
'clone D i14']
gi|386706195|ref|YP_006170042.1| Putative Holliday junction resolvase [Escherichia coli P12b]
gi|387608592|ref|YP_006097448.1| putative holliday junction resolvase [Escherichia coli 042]
gi|387613568|ref|YP_006116684.1| putative holliday junction resolvase [Escherichia coli ETEC H10407]
gi|387618219|ref|YP_006121241.1| Holliday junction resolvase-like protein [Escherichia coli O83:H1
str. NRG 857C]
gi|387622622|ref|YP_006130250.1| Holliday junction resolvase-like protein [Escherichia coli DH1]
gi|387830801|ref|YP_003350738.1| hypothetical protein ECSF_2748 [Escherichia coli SE15]
gi|388478956|ref|YP_491148.1| Holliday junction resolvase [Escherichia coli str. K-12 substr.
W3110]
gi|407470827|ref|YP_006782730.1| Holliday junction resolvase-like protein [Escherichia coli O104:H4
str. 2009EL-2071]
gi|407480512|ref|YP_006777661.1| Holliday junction resolvase-like protein [Escherichia coli O104:H4
str. 2011C-3493]
gi|410481078|ref|YP_006768624.1| Holliday junction resolvase-like protein [Escherichia coli O104:H4
str. 2009EL-2050]
gi|415779353|ref|ZP_11490082.1| conserved hypothetical protein [Escherichia coli 3431]
gi|415839563|ref|ZP_11521305.1| hypothetical protein ECRN5871_3077 [Escherichia coli RN587/1]
gi|415862202|ref|ZP_11535734.1| putative Holliday junction resolvase [Escherichia coli MS 85-1]
gi|416336934|ref|ZP_11673404.1| Putative Holliday junction resolvase [Escherichia coli WV_060327]
gi|417086451|ref|ZP_11953651.1| hypothetical protein i01_04065 [Escherichia coli cloneA_i1]
gi|417140215|ref|ZP_11983465.1| RNAse H domain protein, YqgF family [Escherichia coli 97.0259]
gi|417222900|ref|ZP_12026340.1| RNAse H domain protein, YqgF family [Escherichia coli 96.154]
gi|417270355|ref|ZP_12057715.1| RNAse H domain protein, YqgF family [Escherichia coli 3.3884]
gi|417271205|ref|ZP_12058554.1| RNAse H domain protein, YqgF family [Escherichia coli 2.4168]
gi|417279967|ref|ZP_12067271.1| RNAse H domain protein, YqgF family [Escherichia coli 3.2303]
gi|417280408|ref|ZP_12067708.1| RNAse H domain protein, YqgF family [Escherichia coli 3003]
gi|417286018|ref|ZP_12073309.1| RNAse H domain protein, YqgF family [Escherichia coli TW07793]
gi|417292674|ref|ZP_12079955.1| RNAse H domain protein, YqgF family [Escherichia coli B41]
gi|417603646|ref|ZP_12254213.1| hypothetical protein ECSTEC94C_3468 [Escherichia coli STEC_94C]
gi|417609572|ref|ZP_12260072.1| hypothetical protein ECSTECDG1313_3990 [Escherichia coli
STEC_DG131-3]
gi|417614418|ref|ZP_12264874.1| hypothetical protein ECSTECEH250_3500 [Escherichia coli STEC_EH250]
gi|417619559|ref|ZP_12269967.1| hypothetical protein ECG581_3381 [Escherichia coli G58-1]
gi|417640763|ref|ZP_12290901.1| hypothetical protein ECTX1999_3488 [Escherichia coli TX1999]
gi|417663511|ref|ZP_12313091.1| putative Holliday junction resolvase [Escherichia coli AA86]
gi|417806492|ref|ZP_12453433.1| Holliday junction resolvase-like protein [Escherichia coli O104:H4
str. LB226692]
gi|417834241|ref|ZP_12480687.1| Holliday junction resolvase-like protein [Escherichia coli O104:H4
str. 01-09591]
gi|417867420|ref|ZP_12512457.1| hypothetical protein C22711_4347 [Escherichia coli O104:H4 str.
C227-11]
gi|417946692|ref|ZP_12589904.1| Holliday junction resolvase-like protein [Escherichia coli XH140A]
gi|417976690|ref|ZP_12617481.1| Holliday junction resolvase-like protein [Escherichia coli XH001]
gi|418041171|ref|ZP_12679397.1| Holliday junction resolvase-like protein [Escherichia coli W26]
gi|418944172|ref|ZP_13497273.1| Holliday junction resolvase-like protein [Escherichia coli O157:H43
str. T22]
gi|418956675|ref|ZP_13508600.1| Holliday junction resolvase-like protein [Escherichia coli J53]
gi|419143893|ref|ZP_13688626.1| putative Holliday junction resolvase [Escherichia coli DEC6A]
gi|419149938|ref|ZP_13694589.1| hypothetical protein ECDEC6B_3949 [Escherichia coli DEC6B]
gi|419155387|ref|ZP_13699946.1| putative Holliday junction resolvase [Escherichia coli DEC6C]
gi|419160699|ref|ZP_13705199.1| putative Holliday junction resolvase [Escherichia coli DEC6D]
gi|419165748|ref|ZP_13710202.1| hypothetical protein ECDEC6E_3494 [Escherichia coli DEC6E]
gi|419171757|ref|ZP_13715638.1| putative Holliday junction resolvase [Escherichia coli DEC7A]
gi|419182312|ref|ZP_13725923.1| hypothetical protein ECDEC7C_3471 [Escherichia coli DEC7C]
gi|419187939|ref|ZP_13731446.1| hypothetical protein ECDEC7D_3693 [Escherichia coli DEC7D]
gi|419193059|ref|ZP_13736508.1| putative Holliday junction resolvase [Escherichia coli DEC7E]
gi|419371441|ref|ZP_13912553.1| putative Holliday junction resolvase [Escherichia coli DEC14A]
gi|419393078|ref|ZP_13933881.1| hypothetical protein ECDEC15A_3700 [Escherichia coli DEC15A]
gi|419398183|ref|ZP_13938946.1| hypothetical protein ECDEC15B_3502 [Escherichia coli DEC15B]
gi|419403467|ref|ZP_13944187.1| hypothetical protein ECDEC15C_3412 [Escherichia coli DEC15C]
gi|419408624|ref|ZP_13949310.1| hypothetical protein ECDEC15D_3357 [Escherichia coli DEC15D]
gi|419414166|ref|ZP_13954806.1| hypothetical protein ECDEC15E_3689 [Escherichia coli DEC15E]
gi|419812217|ref|ZP_14337086.1| Holliday junction resolvase-like protein [Escherichia coli O32:H37
str. P4]
gi|419916147|ref|ZP_14434478.1| Holliday junction resolvase-like protein [Escherichia coli KD1]
gi|419919893|ref|ZP_14438031.1| Holliday junction resolvase-like protein [Escherichia coli KD2]
gi|419944457|ref|ZP_14460937.1| Holliday junction resolvase-like protein [Escherichia coli HM605]
gi|419948213|ref|ZP_14464513.1| Holliday junction resolvase-like protein [Escherichia coli CUMT8]
gi|420387089|ref|ZP_14886433.1| putative Holliday junction resolvase [Escherichia coli EPECa12]
gi|422363332|ref|ZP_16443869.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
153-1]
gi|422372589|ref|ZP_16452946.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 16-3]
gi|422376910|ref|ZP_16457156.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 60-1]
gi|422750030|ref|ZP_16803941.1| hypothetical protein ERKG_02256 [Escherichia coli H252]
gi|422760408|ref|ZP_16814168.1| hypothetical protein ERBG_00332 [Escherichia coli E1167]
gi|422767552|ref|ZP_16821278.1| hypothetical protein ERCG_02812 [Escherichia coli E1520]
gi|422771188|ref|ZP_16824878.1| hypothetical protein ERDG_01740 [Escherichia coli E482]
gi|422791761|ref|ZP_16844463.1| hypothetical protein ERHG_02242 [Escherichia coli TA007]
gi|422818066|ref|ZP_16866279.1| RNAse H-fold protein YqgF [Escherichia coli M919]
gi|422989063|ref|ZP_16979836.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
C227-11]
gi|422995955|ref|ZP_16986719.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
C236-11]
gi|423001101|ref|ZP_16991855.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
09-7901]
gi|423004769|ref|ZP_16995515.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
04-8351]
gi|423011272|ref|ZP_17002006.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-3677]
gi|423020500|ref|ZP_17011209.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4404]
gi|423025666|ref|ZP_17016363.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4522]
gi|423031487|ref|ZP_17022174.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4623]
gi|423039312|ref|ZP_17029986.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4632 C1]
gi|423044432|ref|ZP_17035099.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4632 C2]
gi|423046161|ref|ZP_17036821.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4632 C3]
gi|423054699|ref|ZP_17043506.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4632 C4]
gi|423061674|ref|ZP_17050470.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4632 C5]
gi|423703686|ref|ZP_17678111.1| RNAse H-fold protein YqgF [Escherichia coli H730]
gi|423707110|ref|ZP_17681493.1| RNAse H-fold protein YqgF [Escherichia coli B799]
gi|425116479|ref|ZP_18518270.1| putative Holliday junction resolvase [Escherichia coli 8.0566]
gi|425121234|ref|ZP_18522921.1| putative Holliday junction resolvase [Escherichia coli 8.0569]
gi|425274126|ref|ZP_18665527.1| putative Holliday junction resolvase [Escherichia coli TW15901]
gi|425279302|ref|ZP_18670535.1| putative Holliday junction resolvase [Escherichia coli ARS4.2123]
gi|425284650|ref|ZP_18675682.1| putative Holliday junction resolvase [Escherichia coli TW00353]
gi|425290083|ref|ZP_18680914.1| putative Holliday junction resolvase [Escherichia coli 3006]
gi|425301783|ref|ZP_18691668.1| putative Holliday junction resolvase [Escherichia coli 07798]
gi|427806129|ref|ZP_18973196.1| hypothetical protein BN16_35571 [Escherichia coli chi7122]
gi|427810722|ref|ZP_18977787.1| hypothetical protein BN17_28621 [Escherichia coli]
gi|429720531|ref|ZP_19255456.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-9450]
gi|429772429|ref|ZP_19304449.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-02030]
gi|429777376|ref|ZP_19309350.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429786101|ref|ZP_19317996.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-02092]
gi|429791991|ref|ZP_19323845.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-02093]
gi|429792840|ref|ZP_19324688.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-02281]
gi|429799415|ref|ZP_19331213.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-02318]
gi|429803032|ref|ZP_19334792.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-02913]
gi|429812828|ref|ZP_19344511.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-03439]
gi|429813376|ref|ZP_19345055.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-04080]
gi|429818584|ref|ZP_19350218.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-03943]
gi|429904935|ref|ZP_19370914.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-9990]
gi|429909071|ref|ZP_19375035.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-9941]
gi|429914945|ref|ZP_19380892.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-4984]
gi|429919975|ref|ZP_19385906.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-5604]
gi|429925795|ref|ZP_19391708.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-4986]
gi|429929731|ref|ZP_19395633.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-4987]
gi|429936270|ref|ZP_19402156.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-4988]
gi|429941950|ref|ZP_19407824.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-5603]
gi|429944631|ref|ZP_19410493.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-6006]
gi|429952189|ref|ZP_19418035.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429955538|ref|ZP_19421370.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. Ec12-0466]
gi|432359272|ref|ZP_19602488.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE4]
gi|432364119|ref|ZP_19607276.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE5]
gi|432373516|ref|ZP_19616551.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE11]
gi|432378132|ref|ZP_19621118.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE12]
gi|432382652|ref|ZP_19625591.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE15]
gi|432388585|ref|ZP_19631466.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE16]
gi|432398876|ref|ZP_19641651.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE25]
gi|432418414|ref|ZP_19661010.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE44]
gi|432423267|ref|ZP_19665806.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE178]
gi|432433146|ref|ZP_19675571.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE187]
gi|432437629|ref|ZP_19680016.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE188]
gi|432442381|ref|ZP_19684718.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE189]
gi|432447495|ref|ZP_19689793.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE191]
gi|432457972|ref|ZP_19700151.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE201]
gi|432472256|ref|ZP_19714296.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE206]
gi|432486709|ref|ZP_19728619.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE212]
gi|432515215|ref|ZP_19752436.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE224]
gi|432525103|ref|ZP_19762227.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE230]
gi|432527737|ref|ZP_19764821.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE233]
gi|432535317|ref|ZP_19772284.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE234]
gi|432544592|ref|ZP_19781432.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE236]
gi|432550082|ref|ZP_19786846.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE237]
gi|432554990|ref|ZP_19791709.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE47]
gi|432565219|ref|ZP_19801792.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE51]
gi|432569992|ref|ZP_19806500.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE53]
gi|432575127|ref|ZP_19811601.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE55]
gi|432594125|ref|ZP_19830438.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE60]
gi|432599122|ref|ZP_19835393.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE62]
gi|432608791|ref|ZP_19844974.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE67]
gi|432612933|ref|ZP_19849091.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE72]
gi|432618138|ref|ZP_19854246.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE75]
gi|432623171|ref|ZP_19859193.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE76]
gi|432628578|ref|ZP_19864550.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE77]
gi|432638160|ref|ZP_19874027.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE81]
gi|432647485|ref|ZP_19883271.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE86]
gi|432657076|ref|ZP_19892776.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE93]
gi|432662156|ref|ZP_19897794.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE111]
gi|432672033|ref|ZP_19907558.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE119]
gi|432681568|ref|ZP_19916932.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE143]
gi|432686762|ref|ZP_19922055.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE156]
gi|432688160|ref|ZP_19923436.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE161]
gi|432700344|ref|ZP_19935494.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE169]
gi|432705705|ref|ZP_19940801.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE171]
gi|432707193|ref|ZP_19942271.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE6]
gi|432714668|ref|ZP_19949698.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE8]
gi|432720065|ref|ZP_19955030.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE9]
gi|432724396|ref|ZP_19959310.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE17]
gi|432728976|ref|ZP_19963851.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE18]
gi|432738428|ref|ZP_19973182.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE42]
gi|432742666|ref|ZP_19977381.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE23]
gi|432746909|ref|ZP_19981571.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE43]
gi|432766311|ref|ZP_20000728.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE48]
gi|432784822|ref|ZP_20019000.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE63]
gi|432803115|ref|ZP_20037070.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE84]
gi|432816645|ref|ZP_20050406.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE115]
gi|432845976|ref|ZP_20078657.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE141]
gi|432876866|ref|ZP_20094735.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE154]
gi|432890303|ref|ZP_20103235.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE165]
gi|432900157|ref|ZP_20110579.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE192]
gi|432906310|ref|ZP_20115038.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE194]
gi|432939435|ref|ZP_20137538.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE183]
gi|432956635|ref|ZP_20148293.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE197]
gi|432969013|ref|ZP_20157925.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE203]
gi|432973090|ref|ZP_20161951.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE207]
gi|432975056|ref|ZP_20163891.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE209]
gi|432986674|ref|ZP_20175391.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE215]
gi|432992029|ref|ZP_20180688.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE217]
gi|432996615|ref|ZP_20185198.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE218]
gi|433006406|ref|ZP_20194831.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE227]
gi|433009074|ref|ZP_20197487.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE229]
gi|433015192|ref|ZP_20203530.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE104]
gi|433024779|ref|ZP_20212757.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE106]
gi|433029844|ref|ZP_20217696.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE109]
gi|433039916|ref|ZP_20227512.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE113]
gi|433049359|ref|ZP_20236699.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE120]
gi|433059394|ref|ZP_20246434.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE124]
gi|433079103|ref|ZP_20265625.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE131]
gi|433083844|ref|ZP_20270296.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE133]
gi|433088589|ref|ZP_20274956.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE137]
gi|433102499|ref|ZP_20288575.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE145]
gi|433112160|ref|ZP_20298016.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE150]
gi|433116797|ref|ZP_20302584.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE153]
gi|433131486|ref|ZP_20316917.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE163]
gi|433136149|ref|ZP_20321486.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE166]
gi|433145516|ref|ZP_20330653.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE168]
gi|433155025|ref|ZP_20339960.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE176]
gi|433164910|ref|ZP_20349642.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE179]
gi|433169895|ref|ZP_20354518.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE180]
gi|433174831|ref|ZP_20359346.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE232]
gi|433189698|ref|ZP_20373790.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE88]
gi|433199648|ref|ZP_20383539.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE94]
gi|433209031|ref|ZP_20392702.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE97]
gi|433213815|ref|ZP_20397403.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE99]
gi|433322133|ref|ZP_20399637.1| Holliday junction resolvase-like protein [Escherichia coli J96]
gi|442593127|ref|ZP_21011082.1| Putative Holliday junction resolvase YggF [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|442605084|ref|ZP_21019922.1| Putative Holliday junction resolvase YggF [Escherichia coli Nissle
1917]
gi|443619003|ref|YP_007382859.1| Holliday junction resolvase-like protein [Escherichia coli APEC
O78]
gi|450248551|ref|ZP_21901424.1| Holliday junction resolvase-like protein [Escherichia coli S17]
gi|67472397|sp|P0A8I1.1|RUVX_ECOLI RecName: Full=Putative Holliday junction resolvase
gi|67472398|sp|P0A8I2.1|RUVX_ECOL6 RecName: Full=Putative Holliday junction resolvase
gi|118597209|sp|Q0TDQ2.1|RUVX_ECOL5 RecName: Full=Putative Holliday junction resolvase
gi|146325571|sp|Q1R778.1|RUVX_ECOUT RecName: Full=Putative Holliday junction resolvase
gi|167012719|sp|A8A489.1|RUVX_ECOHS RecName: Full=Putative Holliday junction resolvase
gi|167012720|sp|A1AFD5.1|RUVX_ECOK1 RecName: Full=Putative Holliday junction resolvase
gi|189046095|sp|B1IT58.1|RUVX_ECOLC RecName: Full=Putative Holliday junction resolvase
gi|226725515|sp|B7MMD7.1|RUVX_ECO45 RecName: Full=Putative Holliday junction resolvase
gi|226725519|sp|B1XFA9.1|RUVX_ECODH RecName: Full=Putative Holliday junction resolvase
gi|254767515|sp|B7LFL2.1|RUVX_ECO55 RecName: Full=Putative Holliday junction resolvase
gi|254767516|sp|B7MZP8.1|RUVX_ECO81 RecName: Full=Putative Holliday junction resolvase
gi|259495702|sp|C5A0L8.1|RUVX_ECOBW RecName: Full=Putative Holliday junction resolvase
gi|46014935|pdb|1NMN|A Chain A, Structure Of Yqgf From Escherichia Coli, A Hypothetical
Protein
gi|46014936|pdb|1NMN|B Chain B, Structure Of Yqgf From Escherichia Coli, A Hypothetical
Protein
gi|26109778|gb|AAN81983.1|AE016766_71 Hypothetical protein yqgF [Escherichia coli CFT073]
gi|1789318|gb|AAC75986.1| putative Holliday junction resolvase [Escherichia coli str. K-12
substr. MG1655]
gi|85675759|dbj|BAE77012.1| predicted Holliday junction resolvase [Escherichia coli str. K12
substr. W3110]
gi|91073905|gb|ABE08786.1| hypothetical protein UTI89_C3338 [Escherichia coli UTI89]
gi|110344690|gb|ABG70927.1| hypothetical protein YqgF [Escherichia coli 536]
gi|115514300|gb|ABJ02375.1| Holliday junction resolvase-like protein [Escherichia coli APEC O1]
gi|157068088|gb|ABV07343.1| conserved hypothetical protein TIGR00250 [Escherichia coli HS]
gi|169753738|gb|ACA76437.1| Holliday junction resolvase YqgF [Escherichia coli ATCC 8739]
gi|169890336|gb|ACB04043.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. DH10B]
gi|188486984|gb|EDU62087.1| putative Holliday junction resolvase [Escherichia coli 53638]
gi|190907912|gb|EDV67505.1| putative Holliday junction resolvase [Escherichia coli F11]
gi|218353279|emb|CAU99238.1| Holliday junction resolvase [Escherichia coli 55989]
gi|218366709|emb|CAR04466.1| Holliday junction resolvase [Escherichia coli S88]
gi|218428637|emb|CAR09566.2| Holliday junction resolvase [Escherichia coli ED1a]
gi|222034644|emb|CAP77386.1| Holliday junction resolvase [Escherichia coli LF82]
gi|238862456|gb|ACR64454.1| predicted Holliday junction resolvase [Escherichia coli BW2952]
gi|253323257|gb|ACT27859.1| Holliday junction resolvase YqgF [Escherichia coli
'BL21-Gold(DE3)pLysS AG']
gi|260448008|gb|ACX38430.1| Holliday junction resolvase YqgF [Escherichia coli DH1]
gi|281179958|dbj|BAI56288.1| conserved hypothetical protein [Escherichia coli SE15]
gi|284922892|emb|CBG35981.1| putative holliday junction resolvase [Escherichia coli 042]
gi|291469080|gb|EFF11571.1| hypothetical protein ECEG_02316 [Escherichia coli B354]
gi|294491308|gb|ADE90064.1| conserved hypothetical protein TIGR00250 [Escherichia coli IHE3034]
gi|299879162|gb|EFI87373.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
196-1]
gi|300298952|gb|EFJ55337.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
185-1]
gi|300304832|gb|EFJ59352.1| hypothetical protein HMPREF9553_04608 [Escherichia coli MS 200-1]
gi|300318789|gb|EFJ68573.1| hypothetical protein HMPREF9547_00152 [Escherichia coli MS 175-1]
gi|300395106|gb|EFJ78644.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 69-1]
gi|300401730|gb|EFJ85268.1| hypothetical protein HMPREF9536_04449 [Escherichia coli MS 84-1]
gi|300409358|gb|EFJ92896.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 45-1]
gi|300411752|gb|EFJ95062.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
115-1]
gi|300452725|gb|EFK16345.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
116-1]
gi|300454469|gb|EFK17962.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 21-1]
gi|300522688|gb|EFK43757.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
119-7]
gi|300838389|gb|EFK66149.1| hypothetical protein HMPREF9347_05007 [Escherichia coli MS 124-1]
gi|300846049|gb|EFK73809.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 78-1]
gi|301077900|gb|EFK92706.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
146-1]
gi|305854185|gb|EFM54623.1| Holliday junction resolvase-like protein [Escherichia coli NC101]
gi|307625477|gb|ADN69781.1| Holliday junction resolvase-like protein [Escherichia coli UM146]
gi|309703304|emb|CBJ02640.1| putative holliday junction resolvase [Escherichia coli ETEC H10407]
gi|310332752|gb|EFP99965.1| conserved hypothetical protein [Escherichia coli 1827-70]
gi|312947480|gb|ADR28307.1| Holliday junction resolvase-like protein [Escherichia coli O83:H1
str. NRG 857C]
gi|315137546|dbj|BAJ44705.1| Holliday junction resolvase-like protein [Escherichia coli DH1]
gi|315256841|gb|EFU36809.1| putative Holliday junction resolvase [Escherichia coli MS 85-1]
gi|315293937|gb|EFU53289.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS
153-1]
gi|315295638|gb|EFU54961.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 16-3]
gi|315614890|gb|EFU95528.1| conserved hypothetical protein [Escherichia coli 3431]
gi|320195068|gb|EFW69697.1| Putative Holliday junction resolvase [Escherichia coli WV_060327]
gi|323188657|gb|EFZ73942.1| hypothetical protein ECRN5871_3077 [Escherichia coli RN587/1]
gi|323936048|gb|EGB32343.1| hypothetical protein ERCG_02812 [Escherichia coli E1520]
gi|323941965|gb|EGB38144.1| hypothetical protein ERDG_01740 [Escherichia coli E482]
gi|323951613|gb|EGB47488.1| hypothetical protein ERKG_02256 [Escherichia coli H252]
gi|323971704|gb|EGB66932.1| hypothetical protein ERHG_02242 [Escherichia coli TA007]
gi|324011800|gb|EGB81019.1| conserved hypothetical protein TIGR00250 [Escherichia coli MS 60-1]
gi|324119744|gb|EGC13624.1| hypothetical protein ERBG_00332 [Escherichia coli E1167]
gi|330908984|gb|EGH37498.1| putative Holliday junction resolvase [Escherichia coli AA86]
gi|331037113|gb|EGI09337.1| putative Holliday junction resolvase [Escherichia coli H736]
gi|331042451|gb|EGI14593.1| putative Holliday junction resolvase [Escherichia coli M605]
gi|331053666|gb|EGI25695.1| putative Holliday junction resolvase [Escherichia coli TA206]
gi|331063360|gb|EGI35273.1| putative Holliday junction resolvase [Escherichia coli TA271]
gi|331073771|gb|EGI45092.1| putative Holliday junction resolvase [Escherichia coli H591]
gi|332344848|gb|AEE58182.1| conserved hypothetical protein [Escherichia coli UMNK88]
gi|340733237|gb|EGR62369.1| Holliday junction resolvase-like protein [Escherichia coli O104:H4
str. 01-09591]
gi|340738954|gb|EGR73194.1| Holliday junction resolvase-like protein [Escherichia coli O104:H4
str. LB226692]
gi|341920709|gb|EGT70315.1| hypothetical protein C22711_4347 [Escherichia coli O104:H4 str.
C227-11]
gi|342361601|gb|EGU25736.1| Holliday junction resolvase-like protein [Escherichia coli XH140A]
gi|344193612|gb|EGV47691.1| Holliday junction resolvase-like protein [Escherichia coli XH001]
gi|345349168|gb|EGW81459.1| hypothetical protein ECSTEC94C_3468 [Escherichia coli STEC_94C]
gi|345356783|gb|EGW88984.1| hypothetical protein ECSTECDG1313_3990 [Escherichia coli
STEC_DG131-3]
gi|345360919|gb|EGW93084.1| hypothetical protein ECSTECEH250_3500 [Escherichia coli STEC_EH250]
gi|345372689|gb|EGX04652.1| hypothetical protein ECG581_3381 [Escherichia coli G58-1]
gi|345392546|gb|EGX22327.1| hypothetical protein ECTX1999_3488 [Escherichia coli TX1999]
gi|354862790|gb|EHF23228.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
C236-11]
gi|354868074|gb|EHF28496.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
C227-11]
gi|354868469|gb|EHF28887.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
04-8351]
gi|354874072|gb|EHF34449.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
09-7901]
gi|354880755|gb|EHF41091.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-3677]
gi|354887909|gb|EHF48174.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4404]
gi|354892497|gb|EHF52706.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4522]
gi|354893703|gb|EHF53906.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4632 C1]
gi|354896506|gb|EHF56677.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4623]
gi|354897883|gb|EHF58040.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4632 C2]
gi|354911735|gb|EHF71739.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4632 C5]
gi|354913684|gb|EHF73674.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4632 C3]
gi|354916641|gb|EHF76613.1| putative Holliday junction resolvase [Escherichia coli O104:H4 str.
11-4632 C4]
gi|355350607|gb|EHF99804.1| hypothetical protein i01_04065 [Escherichia coli cloneA_i1]
gi|355421598|gb|AER85795.1| Holliday junction resolvase-like protein [Escherichia coli str.
'clone D i2']
gi|355426518|gb|AER90714.1| Holliday junction resolvase-like protein [Escherichia coli str.
'clone D i14']
gi|359333187|dbj|BAL39634.1| predicted Holliday junction resolvase [Escherichia coli str. K-12
substr. MDS42]
gi|375320529|gb|EHS66473.1| Holliday junction resolvase-like protein [Escherichia coli O157:H43
str. T22]
gi|377991043|gb|EHV54199.1| hypothetical protein ECDEC6B_3949 [Escherichia coli DEC6B]
gi|377992043|gb|EHV55191.1| putative Holliday junction resolvase [Escherichia coli DEC6A]
gi|377995236|gb|EHV58356.1| putative Holliday junction resolvase [Escherichia coli DEC6C]
gi|378005888|gb|EHV68880.1| putative Holliday junction resolvase [Escherichia coli DEC6D]
gi|378008677|gb|EHV71636.1| hypothetical protein ECDEC6E_3494 [Escherichia coli DEC6E]
gi|378013544|gb|EHV76461.1| putative Holliday junction resolvase [Escherichia coli DEC7A]
gi|378022432|gb|EHV85119.1| hypothetical protein ECDEC7C_3471 [Escherichia coli DEC7C]
gi|378025688|gb|EHV88328.1| hypothetical protein ECDEC7D_3693 [Escherichia coli DEC7D]
gi|378036906|gb|EHV99442.1| putative Holliday junction resolvase [Escherichia coli DEC7E]
gi|378214819|gb|EHX75121.1| putative Holliday junction resolvase [Escherichia coli DEC14A]
gi|378236046|gb|EHX96101.1| hypothetical protein ECDEC15A_3700 [Escherichia coli DEC15A]
gi|378241117|gb|EHY01084.1| hypothetical protein ECDEC15B_3502 [Escherichia coli DEC15B]
gi|378245722|gb|EHY05659.1| hypothetical protein ECDEC15C_3412 [Escherichia coli DEC15C]
gi|378253185|gb|EHY13063.1| hypothetical protein ECDEC15D_3357 [Escherichia coli DEC15D]
gi|378258149|gb|EHY17980.1| hypothetical protein ECDEC15E_3689 [Escherichia coli DEC15E]
gi|383104363|gb|AFG41872.1| Putative Holliday junction resolvase [Escherichia coli P12b]
gi|383475865|gb|EID67818.1| Holliday junction resolvase-like protein [Escherichia coli W26]
gi|384380469|gb|EIE38335.1| Holliday junction resolvase-like protein [Escherichia coli J53]
gi|385154954|gb|EIF16961.1| Holliday junction resolvase-like protein [Escherichia coli O32:H37
str. P4]
gi|385538579|gb|EIF85441.1| RNAse H-fold protein YqgF [Escherichia coli M919]
gi|385707720|gb|EIG44747.1| RNAse H-fold protein YqgF [Escherichia coli H730]
gi|385710661|gb|EIG47638.1| RNAse H-fold protein YqgF [Escherichia coli B799]
gi|386121183|gb|EIG69801.1| putative Holliday junction resolvase [Escherichia sp. 4_1_40B]
gi|386156338|gb|EIH12683.1| RNAse H domain protein, YqgF family [Escherichia coli 97.0259]
gi|386202702|gb|EII01693.1| RNAse H domain protein, YqgF family [Escherichia coli 96.154]
gi|386229160|gb|EII56516.1| RNAse H domain protein, YqgF family [Escherichia coli 3.3884]
gi|386234905|gb|EII66881.1| RNAse H domain protein, YqgF family [Escherichia coli 2.4168]
gi|386237297|gb|EII74243.1| RNAse H domain protein, YqgF family [Escherichia coli 3.2303]
gi|386244737|gb|EII86467.1| RNAse H domain protein, YqgF family [Escherichia coli 3003]
gi|386251259|gb|EII97426.1| RNAse H domain protein, YqgF family [Escherichia coli TW07793]
gi|386254996|gb|EIJ04686.1| RNAse H domain protein, YqgF family [Escherichia coli B41]
gi|388382547|gb|EIL44402.1| Holliday junction resolvase-like protein [Escherichia coli KD1]
gi|388386431|gb|EIL48079.1| Holliday junction resolvase-like protein [Escherichia coli KD2]
gi|388418520|gb|EIL78325.1| Holliday junction resolvase-like protein [Escherichia coli HM605]
gi|388421634|gb|EIL81239.1| Holliday junction resolvase-like protein [Escherichia coli CUMT8]
gi|391303969|gb|EIQ61795.1| putative Holliday junction resolvase [Escherichia coli EPECa12]
gi|406776240|gb|AFS55664.1| Holliday junction resolvase-like protein [Escherichia coli O104:H4
str. 2009EL-2050]
gi|407052809|gb|AFS72860.1| Holliday junction resolvase-like protein [Escherichia coli O104:H4
str. 2011C-3493]
gi|407066862|gb|AFS87909.1| Holliday junction resolvase-like protein [Escherichia coli O104:H4
str. 2009EL-2071]
gi|408191741|gb|EKI17340.1| putative Holliday junction resolvase [Escherichia coli TW15901]
gi|408199992|gb|EKI25180.1| putative Holliday junction resolvase [Escherichia coli ARS4.2123]
gi|408200839|gb|EKI26015.1| putative Holliday junction resolvase [Escherichia coli TW00353]
gi|408211865|gb|EKI36406.1| putative Holliday junction resolvase [Escherichia coli 07798]
gi|408212027|gb|EKI36561.1| putative Holliday junction resolvase [Escherichia coli 3006]
gi|408566007|gb|EKK42088.1| putative Holliday junction resolvase [Escherichia coli 8.0566]
gi|408566996|gb|EKK43057.1| putative Holliday junction resolvase [Escherichia coli 8.0569]
gi|412964311|emb|CCK48239.1| hypothetical protein BN16_35571 [Escherichia coli chi7122]
gi|412970901|emb|CCJ45553.1| hypothetical protein BN17_28621 [Escherichia coli]
gi|429347631|gb|EKY84404.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-02092]
gi|429358667|gb|EKY95336.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-02030]
gi|429360412|gb|EKY97071.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-02033-1]
gi|429360723|gb|EKY97381.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-02093]
gi|429364091|gb|EKZ00716.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-02318]
gi|429375646|gb|EKZ12180.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-02281]
gi|429378054|gb|EKZ14569.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-03439]
gi|429389699|gb|EKZ26119.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-02913]
gi|429393533|gb|EKZ29928.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-03943]
gi|429403537|gb|EKZ39821.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. 11-04080]
gi|429404722|gb|EKZ40993.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-9990]
gi|429408237|gb|EKZ44477.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-9450]
gi|429413341|gb|EKZ49530.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-4987]
gi|429416070|gb|EKZ52228.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-4984]
gi|429419751|gb|EKZ55886.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-4986]
gi|429430590|gb|EKZ66651.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-4988]
gi|429434956|gb|EKZ70977.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-5603]
gi|429437089|gb|EKZ73101.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-6006]
gi|429442038|gb|EKZ78001.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-5604]
gi|429446759|gb|EKZ82687.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. Ec12-0465]
gi|429450371|gb|EKZ86267.1| RNAse H-fold protein YqgF [Escherichia coli O104:H4 str. Ec11-9941]
gi|429456128|gb|EKZ91975.1| YqgF family RNAse H domain-containing protein [Escherichia coli
O104:H4 str. Ec12-0466]
gi|430875134|gb|ELB98677.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE4]
gi|430883881|gb|ELC06852.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE5]
gi|430894557|gb|ELC16845.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE11]
gi|430897384|gb|ELC19594.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE12]
gi|430904818|gb|ELC26517.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE16]
gi|430905712|gb|ELC27320.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE15]
gi|430913481|gb|ELC34602.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE25]
gi|430937692|gb|ELC57946.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE44]
gi|430942576|gb|ELC62707.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE178]
gi|430951328|gb|ELC70548.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE187]
gi|430961802|gb|ELC79809.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE188]
gi|430965285|gb|ELC82726.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE189]
gi|430972341|gb|ELC89339.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE191]
gi|430980974|gb|ELC97718.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE201]
gi|430996887|gb|ELD13162.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE206]
gi|431014396|gb|ELD28104.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE212]
gi|431040590|gb|ELD51125.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE224]
gi|431050249|gb|ELD60000.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE230]
gi|431059171|gb|ELD68547.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE234]
gi|431061895|gb|ELD71188.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE233]
gi|431073527|gb|ELD81178.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE236]
gi|431078804|gb|ELD85844.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE237]
gi|431082341|gb|ELD88655.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE47]
gi|431091614|gb|ELD97331.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE51]
gi|431098624|gb|ELE03937.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE53]
gi|431105710|gb|ELE10044.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE55]
gi|431126527|gb|ELE28874.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE60]
gi|431128992|gb|ELE31168.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE62]
gi|431136870|gb|ELE38726.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE67]
gi|431147116|gb|ELE48539.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE72]
gi|431152692|gb|ELE53638.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE75]
gi|431157810|gb|ELE58444.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE76]
gi|431161871|gb|ELE62340.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE77]
gi|431169575|gb|ELE69794.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE81]
gi|431178832|gb|ELE78739.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE86]
gi|431189249|gb|ELE88674.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE93]
gi|431198230|gb|ELE97055.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE111]
gi|431208880|gb|ELF07001.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE119]
gi|431218613|gb|ELF16053.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE143]
gi|431220736|gb|ELF18069.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE156]
gi|431237613|gb|ELF32607.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE161]
gi|431241489|gb|ELF35925.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE171]
gi|431241955|gb|ELF36384.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE169]
gi|431254474|gb|ELF47744.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE8]
gi|431256303|gb|ELF49377.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE6]
gi|431260888|gb|ELF52979.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE9]
gi|431263330|gb|ELF55316.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE17]
gi|431271572|gb|ELF62691.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE18]
gi|431280483|gb|ELF71399.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE42]
gi|431281824|gb|ELF72722.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE23]
gi|431290021|gb|ELF80746.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE43]
gi|431308365|gb|ELF96645.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE48]
gi|431327979|gb|ELG15299.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE63]
gi|431347207|gb|ELG34100.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE84]
gi|431361646|gb|ELG48225.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE115]
gi|431393486|gb|ELG77050.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE141]
gi|431418830|gb|ELH01224.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE154]
gi|431423930|gb|ELH06027.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE192]
gi|431430701|gb|ELH12532.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE194]
gi|431431428|gb|ELH13203.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE165]
gi|431461105|gb|ELH41373.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE183]
gi|431466252|gb|ELH46329.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE197]
gi|431468723|gb|ELH48656.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE203]
gi|431480250|gb|ELH59977.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE207]
gi|431487122|gb|ELH66767.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE209]
gi|431492298|gb|ELH71899.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE217]
gi|431497943|gb|ELH77160.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE215]
gi|431503410|gb|ELH82145.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE218]
gi|431512154|gb|ELH90282.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE227]
gi|431522106|gb|ELH99341.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE229]
gi|431528899|gb|ELI05604.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE104]
gi|431533408|gb|ELI09908.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE106]
gi|431541526|gb|ELI16965.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE109]
gi|431550314|gb|ELI24311.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE113]
gi|431563205|gb|ELI36438.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE120]
gi|431568036|gb|ELI41028.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE124]
gi|431595157|gb|ELI65231.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE131]
gi|431599984|gb|ELI69662.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE133]
gi|431603605|gb|ELI73030.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE137]
gi|431617751|gb|ELI86762.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE145]
gi|431626030|gb|ELI94582.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE150]
gi|431632813|gb|ELJ01100.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE153]
gi|431644849|gb|ELJ12503.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE163]
gi|431654808|gb|ELJ21855.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE166]
gi|431659765|gb|ELJ26655.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE168]
gi|431672420|gb|ELJ38691.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE176]
gi|431685266|gb|ELJ50841.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE179]
gi|431686171|gb|ELJ51737.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE180]
gi|431690118|gb|ELJ55602.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE232]
gi|431704064|gb|ELJ68698.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE88]
gi|431719431|gb|ELJ83490.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE94]
gi|431729186|gb|ELJ92825.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE97]
gi|431733728|gb|ELJ97163.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE99]
gi|432349340|gb|ELL43769.1| Holliday junction resolvase-like protein [Escherichia coli J96]
gi|441607033|emb|CCP99328.1| Putative Holliday junction resolvase YggF [Escherichia coli
O10:K5(L):H4 str. ATCC 23506]
gi|441714175|emb|CCQ05899.1| Putative Holliday junction resolvase YggF [Escherichia coli Nissle
1917]
gi|443423511|gb|AGC88415.1| Holliday junction resolvase-like protein [Escherichia coli APEC
O78]
gi|449316987|gb|EMD07082.1| Holliday junction resolvase-like protein [Escherichia coli S17]
Length = 138
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|417520485|ref|ZP_12182389.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
gi|353643841|gb|EHC87935.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Uganda str. R8-3404]
Length = 138
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 45/131 (34%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+GV +G TG A RPL +K + + L+E +E + DE I+GLP + D
Sbjct: 14 SIGVAIGQRVTGTA-------RPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E P + + R A R+ R G V L DE ++ EA + G ++ + K D+
Sbjct: 67 GTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKGKVDS 123
Query: 184 YAAVILLERYF 194
+AVI+LE YF
Sbjct: 124 ASAVIILESYF 134
>gi|251786202|ref|YP_003000506.1| Holliday junction resolvase [Escherichia coli BL21(DE3)]
gi|254162859|ref|YP_003045967.1| Holliday junction resolvase-like protein [Escherichia coli B str.
REL606]
gi|254289619|ref|YP_003055367.1| Holliday junction resolvase-like protein [Escherichia coli
BL21(DE3)]
gi|297516337|ref|ZP_06934723.1| Holliday junction resolvase-like protein [Escherichia coli OP50]
gi|432505712|ref|ZP_19747433.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE220]
gi|432652536|ref|ZP_19888283.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE87]
gi|433001189|ref|ZP_20189710.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE223]
gi|433126470|ref|ZP_20312022.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE160]
gi|433140538|ref|ZP_20325788.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE167]
gi|433150457|ref|ZP_20335471.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE174]
gi|242378475|emb|CAQ33259.1| predicted Holliday junction resolvase [Escherichia coli BL21(DE3)]
gi|253974760|gb|ACT40431.1| Holliday junction resolvase-like protein [Escherichia coli B str.
REL606]
gi|253978926|gb|ACT44596.1| Holliday junction resolvase-like protein [Escherichia coli
BL21(DE3)]
gi|431037228|gb|ELD48216.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE220]
gi|431188990|gb|ELE88429.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE87]
gi|431506614|gb|ELH85209.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE223]
gi|431642869|gb|ELJ10576.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE160]
gi|431658393|gb|ELJ25307.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE167]
gi|431669318|gb|ELJ35745.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE174]
Length = 138
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|419939575|ref|ZP_14456366.1| Holliday junction resolvase-like protein [Escherichia coli 75]
gi|388407369|gb|EIL67742.1| Holliday junction resolvase-like protein [Escherichia coli 75]
Length = 138
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRIIGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|882478|gb|AAA69116.1| ORF_o180; was also ORF_o62p before splice [Escherichia coli str.
K-12 substr. MG1655]
Length = 180
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+GV +G TG A RPL +K + + ++E +E + DE I+GLP + D
Sbjct: 56 SIGVAVGQRITGTA-------RPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPLNMD 108
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E P + + R A R+ R G V L DE ++ EA + G ++ + K D+
Sbjct: 109 GTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKGKVDS 165
Query: 184 YAAVILLERYF 194
+AVI+LE YF
Sbjct: 166 ASAVIILESYF 176
>gi|417427676|ref|ZP_12160773.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
gi|353616364|gb|EHC67652.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Mississippi str. A4-633]
Length = 138
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L D G G+A+ + RPL +K + + L+E +E + DE I+GLP +
Sbjct: 6 LAFDFGTKNIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNM 65
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P + + R A R+ R G V L DE ++ EA + G ++ + K D
Sbjct: 66 DGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKGKVD 122
Query: 183 AYAAVILLERYF 194
+ +AVI+LE YF
Sbjct: 123 SASAVIILESYF 134
>gi|16766398|ref|NP_462013.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. LT2]
gi|167552011|ref|ZP_02345764.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|167990376|ref|ZP_02571476.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|194442861|ref|YP_002042356.1| holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. SL254]
gi|197265538|ref|ZP_03165612.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|200388976|ref|ZP_03215588.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204928137|ref|ZP_03219337.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|238909895|ref|ZP_04653732.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Tennessee str. CDC07-0191]
gi|374979110|ref|ZP_09720449.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|375002851|ref|ZP_09727191.1| hypothetical protein SEENIN0B_03212 [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|378446449|ref|YP_005234081.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|378451883|ref|YP_005239243.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|378701004|ref|YP_005182961.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|378985690|ref|YP_005248846.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|378990417|ref|YP_005253581.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
gi|379702354|ref|YP_005244082.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. ST4/74]
gi|383497759|ref|YP_005398448.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhimurium str. 798]
gi|416426474|ref|ZP_11692969.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|416429047|ref|ZP_11694260.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|416439100|ref|ZP_11699977.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|416446066|ref|ZP_11704821.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|416451458|ref|ZP_11708208.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|416459962|ref|ZP_11714407.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|416471966|ref|ZP_11719497.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|416474247|ref|ZP_11720098.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|416492931|ref|ZP_11727718.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|416500912|ref|ZP_11731774.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|416546787|ref|ZP_11754181.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|416577718|ref|ZP_11770004.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|416584004|ref|ZP_11773744.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|416591660|ref|ZP_11778604.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|416598292|ref|ZP_11782679.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|416606808|ref|ZP_11788049.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|416610595|ref|ZP_11790202.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|416620293|ref|ZP_11795651.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|416628432|ref|ZP_11799597.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|416641818|ref|ZP_11805637.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|416647122|ref|ZP_11808121.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|416657015|ref|ZP_11813471.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|416670247|ref|ZP_11819961.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|416675099|ref|ZP_11821422.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|416695468|ref|ZP_11827697.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|416706013|ref|ZP_11831272.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|416712308|ref|ZP_11836019.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|416718504|ref|ZP_11840612.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|416723141|ref|ZP_11843906.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|416733128|ref|ZP_11850219.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|416737617|ref|ZP_11852770.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|416748579|ref|ZP_11858836.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|416754731|ref|ZP_11861523.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|416761613|ref|ZP_11865664.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|416771258|ref|ZP_11872523.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|417343679|ref|ZP_12124203.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|417352187|ref|ZP_12129466.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Gaminara str. A4-567]
gi|417360635|ref|ZP_12134710.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|417385530|ref|ZP_12150565.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
gi|417481295|ref|ZP_12171926.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
gi|417533693|ref|ZP_12187661.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Urbana str. R8-2977]
gi|418481831|ref|ZP_13050854.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 80959-06]
gi|418491219|ref|ZP_13057745.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035278]
gi|418495815|ref|ZP_13062253.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035318]
gi|418498631|ref|ZP_13065045.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035320]
gi|418505597|ref|ZP_13071943.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035321]
gi|418509899|ref|ZP_13076190.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035327]
gi|418512434|ref|ZP_13078677.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Pomona str. ATCC 10729]
gi|418524591|ref|ZP_13090576.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008286]
gi|418788753|ref|ZP_13344546.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19447]
gi|418795290|ref|ZP_13350999.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19449]
gi|418797406|ref|ZP_13353092.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19567]
gi|418806308|ref|ZP_13361880.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21550]
gi|418810467|ref|ZP_13366007.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22513]
gi|418818084|ref|ZP_13373563.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21538]
gi|418823153|ref|ZP_13378562.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22425]
gi|418824269|ref|ZP_13379637.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22462]
gi|418831047|ref|ZP_13386005.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM N18486]
gi|418837220|ref|ZP_13392095.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM N1543]
gi|418842483|ref|ZP_13397293.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21554]
gi|418846823|ref|ZP_13401588.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19443]
gi|418847950|ref|ZP_13402690.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 37978]
gi|418856113|ref|ZP_13410761.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19593]
gi|418857574|ref|ZP_13412201.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19470]
gi|418862649|ref|ZP_13417188.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19536]
gi|418869687|ref|ZP_13424120.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 4176]
gi|421885530|ref|ZP_16316721.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Senftenberg str. SS209]
gi|422027315|ref|ZP_16373658.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm1]
gi|422032350|ref|ZP_16378464.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm2]
gi|427554053|ref|ZP_18928955.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm8]
gi|427571607|ref|ZP_18933670.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm9]
gi|427592355|ref|ZP_18938469.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm3]
gi|427615899|ref|ZP_18943359.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm4]
gi|427639745|ref|ZP_18948239.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm6]
gi|427657330|ref|ZP_18952984.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm10]
gi|427662648|ref|ZP_18957949.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm11]
gi|427676271|ref|ZP_18962764.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm12]
gi|427800322|ref|ZP_18968095.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm5]
gi|452123088|ref|YP_007473336.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Javiana str. CFSAN001992]
gi|32130052|sp|Q8ZM50.1|RUVX_SALTY RecName: Full=Putative Holliday junction resolvase
gi|226731652|sp|B4T5K4.1|RUVX_SALNS RecName: Full=Putative Holliday junction resolvase
gi|16421650|gb|AAL21972.1| putative endonuclease involved in recombination [Salmonella
enterica subsp. enterica serovar Typhimurium str. LT2]
gi|194401524|gb|ACF61746.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Newport str. SL254]
gi|197243793|gb|EDY26413.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA23]
gi|199606074|gb|EDZ04619.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Virchow str. SL491]
gi|204322459|gb|EDZ07656.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Javiana str. GA_MM04042433]
gi|205323262|gb|EDZ11101.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Saintpaul str. SARA29]
gi|205331084|gb|EDZ17848.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar 4,[5],12:i:- str. CVM23701]
gi|261248228|emb|CBG26065.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhimurium str. D23580]
gi|267995262|gb|ACY90147.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. 14028S]
gi|301159652|emb|CBW19171.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Typhimurium str. SL1344]
gi|312914119|dbj|BAJ38093.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. T000240]
gi|321225770|gb|EFX50824.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Typhimurium str. TN061786]
gi|322613494|gb|EFY10435.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315996572]
gi|322621086|gb|EFY17944.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-1]
gi|322624150|gb|EFY20984.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-3]
gi|322628111|gb|EFY24900.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 495297-4]
gi|322633230|gb|EFY29972.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-1]
gi|322636192|gb|EFY32900.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 515920-2]
gi|322639530|gb|EFY36218.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 531954]
gi|322647537|gb|EFY44026.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
NC_MB110209-0054]
gi|322648721|gb|EFY45168.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. OH_2009072675]
gi|322653776|gb|EFY50102.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str.
CASC_09SCPH15965]
gi|322657882|gb|EFY54150.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 19N]
gi|322663985|gb|EFY60184.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 81038-01]
gi|322669004|gb|EFY65155.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MD_MDA09249507]
gi|322673002|gb|EFY69109.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 414877]
gi|322678007|gb|EFY74070.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 366867]
gi|322681183|gb|EFY77216.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 413180]
gi|322687887|gb|EFY83854.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 446600]
gi|323131453|gb|ADX18883.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. ST4/74]
gi|323194917|gb|EFZ80104.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609458-1]
gi|323199621|gb|EFZ84711.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556150-1]
gi|323202632|gb|EFZ87672.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 609460]
gi|323212567|gb|EFZ97384.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 556152]
gi|323214950|gb|EFZ99698.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB101509-0077]
gi|323222680|gb|EGA07045.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB102109-0047]
gi|323225423|gb|EGA09655.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB110209-0055]
gi|323230562|gb|EGA14680.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. MB111609-0052]
gi|323235087|gb|EGA19173.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009083312]
gi|323239126|gb|EGA23176.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 2009085258]
gi|323244516|gb|EGA28522.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 315731156]
gi|323247131|gb|EGA31097.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2009159199]
gi|323253386|gb|EGA37215.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008282]
gi|323256307|gb|EGA40043.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008283]
gi|323262517|gb|EGA46073.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008284]
gi|323267387|gb|EGA50871.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008285]
gi|323269209|gb|EGA52664.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008287]
gi|332989964|gb|AEF08947.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. UK-1]
gi|353077539|gb|EHB43299.1| hypothetical protein SEENIN0B_03212 [Salmonella enterica subsp.
enterica serovar Infantis str. SARB27]
gi|353567243|gb|EHC32503.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Gaminara str. A4-567]
gi|353586184|gb|EHC45831.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Give str. S5-487]
gi|353605551|gb|EHC60029.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Johannesburg str. S5-703]
gi|353635814|gb|EHC82020.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Rubislaw str. A4-653]
gi|353660120|gb|EHC99822.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Urbana str. R8-2977]
gi|357955120|gb|EHJ81042.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Baildon str. R6-199]
gi|366058331|gb|EHN22620.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035318]
gi|366062918|gb|EHN27140.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035278]
gi|366064564|gb|EHN28761.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 80959-06]
gi|366067904|gb|EHN32052.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035321]
gi|366073383|gb|EHN37456.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035320]
gi|366077499|gb|EHN41513.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. CT_02035327]
gi|366083941|gb|EHN47857.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Pomona str. ATCC 10729]
gi|366830565|gb|EHN57435.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 507440-20]
gi|372207450|gb|EHP20949.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. IA_2010008286]
gi|379984798|emb|CCF88994.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Senftenberg str. SS209]
gi|380464580|gb|AFD59983.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Typhimurium str. 798]
gi|392759432|gb|EJA16285.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19449]
gi|392762419|gb|EJA19234.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19447]
gi|392768845|gb|EJA25591.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19567]
gi|392781415|gb|EJA38056.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22513]
gi|392782925|gb|EJA39555.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21550]
gi|392786047|gb|EJA42604.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22425]
gi|392786496|gb|EJA43052.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21538]
gi|392799296|gb|EJA55555.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM N1543]
gi|392800243|gb|EJA56481.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM N18486]
gi|392807054|gb|EJA63138.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21554]
gi|392809294|gb|EJA65331.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19443]
gi|392820463|gb|EJA76313.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19593]
gi|392823815|gb|EJA79608.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 22462]
gi|392824009|gb|EJA79800.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 37978]
gi|392834046|gb|EJA89656.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19536]
gi|392835048|gb|EJA90648.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 19470]
gi|392836150|gb|EJA91738.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 4176]
gi|414015112|gb|EKS98939.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm1]
gi|414015963|gb|EKS99753.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm8]
gi|414016640|gb|EKT00403.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm2]
gi|414029390|gb|EKT12550.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm9]
gi|414030884|gb|EKT13965.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm3]
gi|414033991|gb|EKT16932.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm4]
gi|414044223|gb|EKT26679.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm6]
gi|414044940|gb|EKT27370.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm10]
gi|414049692|gb|EKT31891.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm11]
gi|414057352|gb|EKT39110.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm12]
gi|414063520|gb|EKT44648.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhimurium str. STm5]
gi|451912092|gb|AGF83898.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Javiana str. CFSAN001992]
Length = 138
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|423125757|ref|ZP_17113436.1| putative Holliday junction resolvase [Klebsiella oxytoca 10-5250]
gi|376398838|gb|EHT11461.1| putative Holliday junction resolvase [Klebsiella oxytoca 10-5250]
Length = 138
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 72/138 (52%), Gaps = 6/138 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G LG D G G+A+ + RPL LK + K + ++E +E + + I+GLP
Sbjct: 3 GTFLGFDFGTKSIGVAVGQRITGTARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A ++ R G ++ L DE ++ EA + G ++ ++
Sbjct: 63 LNMDGTEQPLTARARNFANKIHGRF---GVQIILHDERLSTVEARAGLFEQGGFRALKKG 119
Query: 180 KTDAYAAVILLERYFSMS 197
D+ +AVI+LE YF S
Sbjct: 120 SVDSASAVIILESYFEQS 137
>gi|419701757|ref|ZP_14229356.1| Holliday junction resolvase-like protein [Escherichia coli SCI-07]
gi|422383290|ref|ZP_16463442.1| hypothetical protein HMPREF9532_04857 [Escherichia coli MS 57-2]
gi|432733687|ref|ZP_19968512.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE45]
gi|432760773|ref|ZP_19995263.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE46]
gi|324005505|gb|EGB74724.1| hypothetical protein HMPREF9532_04857 [Escherichia coli MS 57-2]
gi|380347219|gb|EIA35508.1| Holliday junction resolvase-like protein [Escherichia coli SCI-07]
gi|431272595|gb|ELF63694.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE45]
gi|431306080|gb|ELF94393.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE46]
Length = 138
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KIDSASAVIILESYF 134
>gi|198242309|ref|YP_002217072.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Dublin str. CT_02021853]
gi|205354020|ref|YP_002227821.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 287/91]
gi|207858358|ref|YP_002245009.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. P125109]
gi|375120577|ref|ZP_09765744.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|375124883|ref|ZP_09770047.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
gi|421360683|ref|ZP_15810959.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 622731-39]
gi|421363457|ref|ZP_15813699.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639016-6]
gi|421369781|ref|ZP_15819956.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 640631]
gi|421374224|ref|ZP_15824355.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-0424]
gi|421378838|ref|ZP_15828917.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-6]
gi|421383492|ref|ZP_15833530.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 485549-17]
gi|421384861|ref|ZP_15834884.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-22]
gi|421389496|ref|ZP_15839479.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-70]
gi|421396782|ref|ZP_15846707.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-26]
gi|421399561|ref|ZP_15849456.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-37]
gi|421405949|ref|ZP_15855774.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-46]
gi|421408523|ref|ZP_15858322.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-50]
gi|421414846|ref|ZP_15864582.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-1427]
gi|421417551|ref|ZP_15867261.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-2659]
gi|421420890|ref|ZP_15870566.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 78-1757]
gi|421428535|ref|ZP_15878146.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22510-1]
gi|421430978|ref|ZP_15880564.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 8b-1]
gi|421435592|ref|ZP_15885128.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648905 5-18]
gi|421440014|ref|ZP_15889494.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 6-18]
gi|421443927|ref|ZP_15893366.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-3079]
gi|421449397|ref|ZP_15898781.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 58-6482]
gi|436586973|ref|ZP_20511752.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22704]
gi|436660640|ref|ZP_20517134.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE30663]
gi|436799755|ref|ZP_20524041.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS44]
gi|436807391|ref|ZP_20527434.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1882]
gi|436818282|ref|ZP_20534915.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1884]
gi|436832505|ref|ZP_20536795.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1594]
gi|436853148|ref|ZP_20543173.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1566]
gi|436861064|ref|ZP_20548248.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1580]
gi|436867707|ref|ZP_20552861.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1543]
gi|436873052|ref|ZP_20555934.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1441]
gi|436880277|ref|ZP_20560036.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1810]
gi|436891677|ref|ZP_20566377.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1558]
gi|436899416|ref|ZP_20570827.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1018]
gi|436902927|ref|ZP_20573391.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1010]
gi|436914989|ref|ZP_20579836.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1729]
gi|436919688|ref|ZP_20582469.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0895]
gi|436928980|ref|ZP_20588186.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0899]
gi|436938407|ref|ZP_20593194.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1457]
gi|436946032|ref|ZP_20597860.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1747]
gi|436955495|ref|ZP_20602370.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0968]
gi|436966227|ref|ZP_20606896.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1444]
gi|436969381|ref|ZP_20608378.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1445]
gi|436980023|ref|ZP_20613168.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1559]
gi|436993568|ref|ZP_20618361.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1565]
gi|437005012|ref|ZP_20622242.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1808]
gi|437022705|ref|ZP_20628654.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1811]
gi|437027563|ref|ZP_20630452.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0956]
gi|437042928|ref|ZP_20636441.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1455]
gi|437050602|ref|ZP_20640747.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1575]
gi|437061834|ref|ZP_20647200.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1725]
gi|437066750|ref|ZP_20649812.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1745]
gi|437074024|ref|ZP_20653466.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1791]
gi|437083108|ref|ZP_20658851.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1795]
gi|437097850|ref|ZP_20665305.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 576709]
gi|437110635|ref|ZP_20667981.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 635290-58]
gi|437125192|ref|ZP_20673854.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-16]
gi|437129593|ref|ZP_20676069.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-19]
gi|437141695|ref|ZP_20683379.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-2]
gi|437146222|ref|ZP_20686011.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-9]
gi|437153408|ref|ZP_20690514.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629163]
gi|437159788|ref|ZP_20694186.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE15-1]
gi|437169250|ref|ZP_20699643.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_N202]
gi|437175777|ref|ZP_20702953.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_56-3991]
gi|437184554|ref|ZP_20708419.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_76-3618]
gi|437205621|ref|ZP_20712418.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13183-1]
gi|437264798|ref|ZP_20720074.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_81-2490]
gi|437269343|ref|ZP_20722586.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL909]
gi|437277555|ref|ZP_20726914.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL913]
gi|437296943|ref|ZP_20732744.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_69-4941]
gi|437315930|ref|ZP_20737618.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 638970-15]
gi|437327762|ref|ZP_20740704.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 17927]
gi|437341830|ref|ZP_20744953.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS4]
gi|437374563|ref|ZP_20749716.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22558]
gi|437417587|ref|ZP_20754006.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 22-17]
gi|437445830|ref|ZP_20758552.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 40-18]
gi|437463434|ref|ZP_20763116.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 1-1]
gi|437481003|ref|ZP_20768708.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 4-1]
gi|437492495|ref|ZP_20771726.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642046 4-7]
gi|437509505|ref|ZP_20776644.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648898 4-5]
gi|437533000|ref|ZP_20781103.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648899 3-17]
gi|437567157|ref|ZP_20787428.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648900 1-16]
gi|437580554|ref|ZP_20791957.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 1-17]
gi|437583420|ref|ZP_20792510.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 39-2]
gi|437605020|ref|ZP_20799199.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648902 6-8]
gi|437619410|ref|ZP_20803562.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648903 1-6]
gi|437643882|ref|ZP_20808515.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648904 3-6]
gi|437665438|ref|ZP_20814589.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 653049 13-19]
gi|437679965|ref|ZP_20818269.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 8-1]
gi|437699993|ref|ZP_20823580.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 9-7]
gi|437703517|ref|ZP_20824560.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 42-20]
gi|437729721|ref|ZP_20830853.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 16-16]
gi|437779115|ref|ZP_20836333.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 76-2651]
gi|437808535|ref|ZP_20840240.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 33944]
gi|437850003|ref|ZP_20847308.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
gi|437967927|ref|ZP_20852688.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
gi|438092822|ref|ZP_20861367.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 81-2625]
gi|438101772|ref|ZP_20864599.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 62-1976]
gi|438116342|ref|ZP_20870861.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 53-407]
gi|445135488|ref|ZP_21383240.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9184]
gi|445145326|ref|ZP_21387288.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Dublin str. SL1438]
gi|445151200|ref|ZP_21390150.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Dublin str. HWS51]
gi|445171073|ref|ZP_21395984.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE8a]
gi|445208924|ref|ZP_21401440.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 20037]
gi|445226334|ref|ZP_21403815.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE10]
gi|445240396|ref|ZP_21407515.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 436]
gi|445335021|ref|ZP_21415339.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 18569]
gi|445343786|ref|ZP_21417249.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13-1]
gi|445358399|ref|ZP_21422591.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. PT23]
gi|226731648|sp|B5FUW0.1|RUVX_SALDC RecName: Full=Putative Holliday junction resolvase
gi|226731649|sp|B5QY73.1|RUVX_SALEP RecName: Full=Putative Holliday junction resolvase
gi|226731650|sp|B5RE57.1|RUVX_SALG2 RecName: Full=Putative Holliday junction resolvase
gi|197936825|gb|ACH74158.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Dublin str. CT_02021853]
gi|205273801|emb|CAR38796.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Gallinarum str. 287/91]
gi|206710161|emb|CAR34517.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Enteritidis str. P125109]
gi|326624844|gb|EGE31189.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Dublin str. SD3246]
gi|326629133|gb|EGE35476.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. SG9]
gi|395981250|gb|EJH90472.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 622731-39]
gi|395981904|gb|EJH91125.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 640631]
gi|395987918|gb|EJH97080.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639016-6]
gi|395994348|gb|EJI03424.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-0424]
gi|395995173|gb|EJI04238.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-6]
gi|395995726|gb|EJI04790.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 485549-17]
gi|396009236|gb|EJI18169.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-26]
gi|396017055|gb|EJI25921.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-70]
gi|396018493|gb|EJI27355.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 596866-22]
gi|396022177|gb|EJI30991.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-46]
gi|396027655|gb|EJI36418.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629164-37]
gi|396027938|gb|EJI36700.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 639672-50]
gi|396034881|gb|EJI43562.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-1427]
gi|396042386|gb|EJI51008.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 77-2659]
gi|396043935|gb|EJI52533.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 78-1757]
gi|396048570|gb|EJI57119.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22510-1]
gi|396054804|gb|EJI63296.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 8b-1]
gi|396056004|gb|EJI64480.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648905 5-18]
gi|396068149|gb|EJI76497.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 6-18]
gi|396069558|gb|EJI77896.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-3079]
gi|396070694|gb|EJI79022.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 58-6482]
gi|434959785|gb|ELL53231.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS44]
gi|434968347|gb|ELL61099.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1882]
gi|434970826|gb|ELL63387.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1884]
gi|434981104|gb|ELL72991.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1594]
gi|434981613|gb|ELL73476.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22704]
gi|434984493|gb|ELL76233.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1566]
gi|434985508|gb|ELL77195.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1580]
gi|434992859|gb|ELL84298.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1543]
gi|434999909|gb|ELL91083.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1441]
gi|435005121|gb|ELL96043.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1810]
gi|435005806|gb|ELL96726.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1558]
gi|435012551|gb|ELM03226.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1018]
gi|435019357|gb|ELM09801.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1010]
gi|435020338|gb|ELM10750.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE30663]
gi|435023071|gb|ELM13367.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1729]
gi|435029523|gb|ELM19581.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0895]
gi|435033670|gb|ELM23562.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0899]
gi|435033931|gb|ELM23821.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1457]
gi|435035604|gb|ELM25449.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1747]
gi|435045871|gb|ELM35497.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0968]
gi|435046637|gb|ELM36252.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1444]
gi|435058699|gb|ELM48006.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1445]
gi|435065245|gb|ELM54351.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1565]
gi|435068579|gb|ELM57607.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1559]
gi|435072303|gb|ELM61232.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1808]
gi|435076642|gb|ELM65425.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1811]
gi|435083578|gb|ELM72179.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1455]
gi|435085622|gb|ELM74175.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_0956]
gi|435088318|gb|ELM76775.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1725]
gi|435093306|gb|ELM81646.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1575]
gi|435097556|gb|ELM85815.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1745]
gi|435106494|gb|ELM94511.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 576709]
gi|435107825|gb|ELM95808.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1791]
gi|435108681|gb|ELM96646.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CDC_2010K_1795]
gi|435118537|gb|ELN06189.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-16]
gi|435118885|gb|ELN06536.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 635290-58]
gi|435126813|gb|ELN14207.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-19]
gi|435127863|gb|ELN15223.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607307-2]
gi|435136467|gb|ELN23557.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 607308-9]
gi|435141159|gb|ELN28101.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 629163]
gi|435148567|gb|ELN35283.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE15-1]
gi|435148978|gb|ELN35692.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_N202]
gi|435156448|gb|ELN42938.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_56-3991]
gi|435159805|gb|ELN46123.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_81-2490]
gi|435161165|gb|ELN47407.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_76-3618]
gi|435172290|gb|ELN57833.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL909]
gi|435172951|gb|ELN58476.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SL913]
gi|435179370|gb|ELN64520.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CVM_69-4941]
gi|435180406|gb|ELN65514.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 638970-15]
gi|435191943|gb|ELN76499.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 17927]
gi|435193496|gb|ELN77975.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. CHS4]
gi|435202222|gb|ELN86076.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 22-17]
gi|435205334|gb|ELN88935.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 22558]
gi|435207576|gb|ELN91028.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13183-1]
gi|435210219|gb|ELN93490.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 40-18]
gi|435218179|gb|ELO00586.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 4-1]
gi|435218711|gb|ELO01112.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 1-1]
gi|435228787|gb|ELO10210.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642046 4-7]
gi|435232788|gb|ELO13877.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648898 4-5]
gi|435234897|gb|ELO15750.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648900 1-16]
gi|435240805|gb|ELO21195.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 1-17]
gi|435242549|gb|ELO22854.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648899 3-17]
gi|435256963|gb|ELO36257.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648902 6-8]
gi|435258690|gb|ELO37950.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648903 1-6]
gi|435263624|gb|ELO42665.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 39-2]
gi|435265025|gb|ELO43910.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 653049 13-19]
gi|435272235|gb|ELO50656.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 642044 8-1]
gi|435274054|gb|ELO52178.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 561362 9-7]
gi|435274437|gb|ELO52550.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648904 3-6]
gi|435289833|gb|ELO66783.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 648901 16-16]
gi|435293607|gb|ELO70299.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 543463 42-20]
gi|435300203|gb|ELO76298.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 33944]
gi|435302689|gb|ELO78638.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 76-2651]
gi|435315136|gb|ELO88418.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 81-2625]
gi|435324455|gb|ELO96388.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 62-1976]
gi|435327857|gb|ELO99508.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 53-407]
gi|435338341|gb|ELP07654.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 6.0562-1]
gi|435339715|gb|ELP08506.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 50-5646]
gi|444845689|gb|ELX70877.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Gallinarum str. 9184]
gi|444846099|gb|ELX71280.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Dublin str. SL1438]
gi|444856100|gb|ELX81138.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Dublin str. HWS51]
gi|444860675|gb|ELX85583.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 20037]
gi|444861743|gb|ELX86616.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE8a]
gi|444867667|gb|ELX92344.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SE10]
gi|444874602|gb|ELX98837.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 18569]
gi|444880946|gb|ELY05008.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 13-1]
gi|444885954|gb|ELY09723.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. PT23]
gi|444891167|gb|ELY14439.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. 436]
Length = 138
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RPL +K + + L+E +E + DE I+GLP
Sbjct: 11 GTKSIGVAIGQRITGTA-------RPLPAIKAQDGTPDWMLIERLLKEWQPDEIIVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ + K
Sbjct: 64 NMDGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKGK 120
Query: 181 TDAYAAVILLERYF 194
D+ +AVI+LE YF
Sbjct: 121 VDSASAVIILESYF 134
>gi|82778279|ref|YP_404628.1| Holliday junction resolvase-like protein [Shigella dysenteriae
Sd197]
gi|209920408|ref|YP_002294492.1| Holliday junction resolvase-like protein [Escherichia coli SE11]
gi|293416210|ref|ZP_06658850.1| hypothetical protein ECDG_03813 [Escherichia coli B185]
gi|309785223|ref|ZP_07679854.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|416340376|ref|ZP_11675391.1| Putative Holliday junction resolvase [Escherichia coli EC4100B]
gi|419279479|ref|ZP_13821723.1| hypothetical protein ECDEC10E_3455 [Escherichia coli DEC10E]
gi|419346636|ref|ZP_13888007.1| hypothetical protein ECDEC13A_3217 [Escherichia coli DEC13A]
gi|419351100|ref|ZP_13892433.1| hypothetical protein ECDEC13B_3064 [Escherichia coli DEC13B]
gi|419356502|ref|ZP_13897754.1| hypothetical protein ECDEC13C_3559 [Escherichia coli DEC13C]
gi|419361573|ref|ZP_13902786.1| hypothetical protein ECDEC13D_3373 [Escherichia coli DEC13D]
gi|419366638|ref|ZP_13907793.1| hypothetical protein ECDEC13E_3399 [Escherichia coli DEC13E]
gi|419376943|ref|ZP_13917966.1| hypothetical protein ECDEC14B_3543 [Escherichia coli DEC14B]
gi|419382251|ref|ZP_13923197.1| hypothetical protein ECDEC14C_3421 [Escherichia coli DEC14C]
gi|419387589|ref|ZP_13928461.1| hypothetical protein ECDEC14D_3415 [Escherichia coli DEC14D]
gi|422354812|ref|ZP_16435537.1| hypothetical protein HMPREF9542_04132 [Escherichia coli MS 117-3]
gi|432482278|ref|ZP_19724229.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE210]
gi|432810644|ref|ZP_20044522.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE101]
gi|432949012|ref|ZP_20143935.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE196]
gi|433044490|ref|ZP_20231977.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE117]
gi|146325607|sp|Q32C18.1|RUVX_SHIDS RecName: Full=Putative Holliday junction resolvase
gi|226725521|sp|B6I787.1|RUVX_ECOSE RecName: Full=Putative Holliday junction resolvase
gi|81242427|gb|ABB63137.1| conserved hypothetical protein [Shigella dysenteriae Sd197]
gi|209913667|dbj|BAG78741.1| conserved hypothetical protein [Escherichia coli SE11]
gi|291432399|gb|EFF05381.1| hypothetical protein ECDG_03813 [Escherichia coli B185]
gi|308926343|gb|EFP71819.1| conserved hypothetical protein [Shigella dysenteriae 1617]
gi|320202613|gb|EFW77183.1| Putative Holliday junction resolvase [Escherichia coli EC4100B]
gi|324017221|gb|EGB86440.1| hypothetical protein HMPREF9542_04132 [Escherichia coli MS 117-3]
gi|378126758|gb|EHW88152.1| hypothetical protein ECDEC10E_3455 [Escherichia coli DEC10E]
gi|378184583|gb|EHX45219.1| hypothetical protein ECDEC13A_3217 [Escherichia coli DEC13A]
gi|378198327|gb|EHX58798.1| hypothetical protein ECDEC13C_3559 [Escherichia coli DEC13C]
gi|378198687|gb|EHX59157.1| hypothetical protein ECDEC13B_3064 [Escherichia coli DEC13B]
gi|378201776|gb|EHX62219.1| hypothetical protein ECDEC13D_3373 [Escherichia coli DEC13D]
gi|378211112|gb|EHX71456.1| hypothetical protein ECDEC13E_3399 [Escherichia coli DEC13E]
gi|378218490|gb|EHX78762.1| hypothetical protein ECDEC14B_3543 [Escherichia coli DEC14B]
gi|378226747|gb|EHX86933.1| hypothetical protein ECDEC14C_3421 [Escherichia coli DEC14C]
gi|378229974|gb|EHX90105.1| hypothetical protein ECDEC14D_3415 [Escherichia coli DEC14D]
gi|431004780|gb|ELD19989.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE210]
gi|431360995|gb|ELG47594.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE101]
gi|431455644|gb|ELH35999.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE196]
gi|431554235|gb|ELI28116.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE117]
Length = 138
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVDVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|16761872|ref|NP_457489.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. CT18]
gi|29143359|ref|NP_806701.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. Ty2]
gi|56415035|ref|YP_152110.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. ATCC 9150]
gi|62181607|ref|YP_218024.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SC-B67]
gi|161616061|ref|YP_001590026.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi B str. SPB7]
gi|168234352|ref|ZP_02659410.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|168236165|ref|ZP_02661223.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|168242900|ref|ZP_02667832.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|168264457|ref|ZP_02686430.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|168463716|ref|ZP_02697633.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|168819873|ref|ZP_02831873.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|194450224|ref|YP_002047085.1| holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. SL476]
gi|194469087|ref|ZP_03075071.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194734127|ref|YP_002116045.1| holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Schwarzengrund str. CVM19633]
gi|197247485|ref|YP_002148011.1| holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Agona str. SL483]
gi|197363964|ref|YP_002143601.1| holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi A str. AKU_12601]
gi|213027960|ref|ZP_03342407.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. 404ty]
gi|213163042|ref|ZP_03348752.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E00-7866]
gi|213420491|ref|ZP_03353557.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E01-6750]
gi|213424109|ref|ZP_03357002.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E02-1180]
gi|213580645|ref|ZP_03362471.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-0664]
gi|213648203|ref|ZP_03378256.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. J185]
gi|213850163|ref|ZP_03381061.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. M223]
gi|224584890|ref|YP_002638689.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|289804300|ref|ZP_06534929.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. AG3]
gi|289828650|ref|ZP_06546460.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Typhi str. E98-3139]
gi|375115944|ref|ZP_09761114.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
gi|378961185|ref|YP_005218671.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|386592798|ref|YP_006089198.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|409246795|ref|YP_006887499.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|416504065|ref|ZP_11733012.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB31]
gi|416515652|ref|ZP_11738779.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. ATCC BAA710]
gi|416527179|ref|ZP_11743017.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. LQC 10]
gi|416533889|ref|ZP_11746707.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB30]
gi|416549622|ref|ZP_11755465.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 29N]
gi|416557881|ref|ZP_11759861.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 42N]
gi|416568527|ref|ZP_11764879.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 4441 H]
gi|417375800|ref|ZP_12145162.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|417469755|ref|ZP_12166052.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|417513429|ref|ZP_12177483.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
gi|418760872|ref|ZP_13317024.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35185]
gi|418766142|ref|ZP_13322221.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35199]
gi|418771468|ref|ZP_13327475.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21539]
gi|418773763|ref|ZP_13329736.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 33953]
gi|418778430|ref|ZP_13334340.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35188]
gi|418783392|ref|ZP_13339239.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21559]
gi|418801326|ref|ZP_13356963.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35202]
gi|419731350|ref|ZP_14258263.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41579]
gi|419735805|ref|ZP_14262678.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41563]
gi|419739574|ref|ZP_14266319.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41573]
gi|419741970|ref|ZP_14268648.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41566]
gi|419748802|ref|ZP_14275292.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41565]
gi|419786967|ref|ZP_14312682.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. Levine 1]
gi|419793361|ref|ZP_14318984.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. Levine 15]
gi|421572976|ref|ZP_16018621.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00322]
gi|421576955|ref|ZP_16022545.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00325]
gi|421579453|ref|ZP_16025016.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00326]
gi|421583305|ref|ZP_16028829.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00328]
gi|423141596|ref|ZP_17129234.1| hypothetical protein SEHO0A_03153 [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|437821414|ref|ZP_20843363.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SARB17]
gi|440763993|ref|ZP_20943027.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Agona str. SH11G1113]
gi|440770020|ref|ZP_20948974.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Agona str. SH08SF124]
gi|440772721|ref|ZP_20951624.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Agona str. SH10GFN094]
gi|32130050|sp|Q8Z3V1.1|RUVX_SALTI RecName: Full=Putative Holliday junction resolvase
gi|62900917|sp|Q5PJJ7.1|RUVX_SALPA RecName: Full=Putative Holliday junction resolvase
gi|81309593|sp|Q57K19.1|RUVX_SALCH RecName: Full=Putative Holliday junction resolvase
gi|189046105|sp|A9N4P3.1|RUVX_SALPB RecName: Full=Putative Holliday junction resolvase
gi|226731647|sp|B5F5M2.1|RUVX_SALA4 RecName: Full=Putative Holliday junction resolvase
gi|226731651|sp|B4THI2.1|RUVX_SALHS RecName: Full=Putative Holliday junction resolvase
gi|226731653|sp|B5BFQ4.1|RUVX_SALPK RecName: Full=Putative Holliday junction resolvase
gi|226731654|sp|B4TV66.1|RUVX_SALSV RecName: Full=Putative Holliday junction resolvase
gi|254767524|sp|C0PY74.1|RUVX_SALPC RecName: Full=Putative Holliday junction resolvase
gi|25306239|pir||AI0877 conserved hypothetical protein STY3250 [imported] - Salmonella
enterica subsp. enterica serovar Typhi (strain CT18)
gi|16504174|emb|CAD02921.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi]
gi|29138993|gb|AAO70561.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Typhi str. Ty2]
gi|56129292|gb|AAV78798.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. ATCC 9150]
gi|62129240|gb|AAX66943.1| putative endonuclease involved in recombination [Salmonella
enterica subsp. enterica serovar Choleraesuis str.
SC-B67]
gi|161365425|gb|ABX69193.1| hypothetical protein SPAB_03862 [Salmonella enterica subsp.
enterica serovar Paratyphi B str. SPB7]
gi|194408528|gb|ACF68747.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL476]
gi|194455451|gb|EDX44290.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CVM29188]
gi|194709629|gb|ACF88850.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. CVM19633]
gi|195633281|gb|EDX51695.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Newport str. SL317]
gi|197095441|emb|CAR61000.1| conserved hypothetical protein [Salmonella enterica subsp. enterica
serovar Paratyphi A str. AKU_12601]
gi|197211188|gb|ACH48585.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Agona str. SL483]
gi|197290851|gb|EDY30205.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Schwarzengrund str. SL480]
gi|205331717|gb|EDZ18481.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Kentucky str. CDC 191]
gi|205338254|gb|EDZ25018.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Heidelberg str. SL486]
gi|205343317|gb|EDZ30081.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Weltevreden str. HI_N05-537]
gi|205347041|gb|EDZ33672.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Hadar str. RI_05P066]
gi|224469418|gb|ACN47248.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Paratyphi C strain RKS4594]
gi|320087529|emb|CBY97294.1| putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Weltevreden str. 2007-60-3289-1]
gi|322716090|gb|EFZ07661.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Choleraesuis str. SCSA50]
gi|353595166|gb|EHC52482.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Inverness str. R8-3668]
gi|353626803|gb|EHC75266.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Montevideo str. S5-403]
gi|353636855|gb|EHC82821.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Senftenberg str. A4-543]
gi|363556834|gb|EHL41047.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. LQC 10]
gi|363558441|gb|EHL42632.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB31]
gi|363563683|gb|EHL47750.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. ATCC BAA710]
gi|363567513|gb|EHL51511.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. SARB30]
gi|363569571|gb|EHL53521.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 29N]
gi|363577872|gb|EHL61691.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 4441 H]
gi|363578091|gb|EHL61908.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Montevideo str. 42N]
gi|374355057|gb|AEZ46818.1| Holliday junction resolvase [Salmonella enterica subsp. enterica
serovar Typhi str. P-stx-12]
gi|379050768|gb|EHY68660.1| hypothetical protein SEHO0A_03153 [Salmonella enterica subsp.
houtenae str. ATCC BAA-1581]
gi|381291531|gb|EIC32768.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41579]
gi|381294129|gb|EIC35269.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41563]
gi|381298153|gb|EIC39234.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41573]
gi|381312798|gb|EIC53591.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41565]
gi|381315337|gb|EIC56100.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. 41566]
gi|383799839|gb|AFH46921.1| Putative Holliday junction resolvase [Salmonella enterica subsp.
enterica serovar Heidelberg str. B182]
gi|392617340|gb|EIW99765.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. Levine 15]
gi|392620910|gb|EIX03276.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. Levine 1]
gi|392733996|gb|EIZ91187.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21539]
gi|392738860|gb|EIZ96000.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35199]
gi|392741593|gb|EIZ98689.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35185]
gi|392752803|gb|EJA09743.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 33953]
gi|392755639|gb|EJA12548.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35188]
gi|392757240|gb|EJA14130.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 21559]
gi|392781047|gb|EJA37698.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Newport str. CVM 35202]
gi|402515052|gb|EJW22467.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00322]
gi|402516839|gb|EJW24247.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00325]
gi|402521664|gb|EJW28998.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00326]
gi|402532231|gb|EJW39428.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Heidelberg str. CFSAN00328]
gi|435306887|gb|ELO82116.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Enteritidis str. SARB17]
gi|436412590|gb|ELP10529.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Agona str. SH08SF124]
gi|436417703|gb|ELP15591.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Agona str. SH11G1113]
gi|436417878|gb|ELP15765.1| Holliday junction resolvase-like protein [Salmonella enterica
subsp. enterica serovar Agona str. SH10GFN094]
Length = 138
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L D G G+A+ + RPL +K + + L+E +E + DE I+GLP +
Sbjct: 6 LAFDFGTKSIGVAIGQRITGTARPLPAIKAQDGTPDWTLIERLLKEWQPDEIIVGLPLNM 65
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P + + R A R+ R G V L DE ++ EA + G ++ + K D
Sbjct: 66 DGTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFERGGYRALNKGKVD 122
Query: 183 AYAAVILLERYF 194
+ +AVI+LE YF
Sbjct: 123 SASAVIILESYF 134
>gi|340751722|ref|ZP_08688532.1| Holliday junction resolvase [Fusobacterium mortiferum ATCC 9817]
gi|229420682|gb|EEO35729.1| Holliday junction resolvase [Fusobacterium mortiferum ATCC 9817]
Length = 139
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 69/133 (51%), Gaps = 7/133 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+ +D+G R G+A S G PL V+ R K ++ EI +E T +IG+PKS D
Sbjct: 6 VALDVGDVRIGVAKSDIMGILATPLEVIDRRKVKAVKRIEEILIQENTKSLVIGIPKSLD 65
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--T 181
G+E Q+ KVR +L + G ++ +DE T+ A DR++N K A + +
Sbjct: 66 GTEKRQAEKVREFIEKL--NKSIEGLEIFEVDERLTTVSA-DRLLNETNKKGALEKRKVV 122
Query: 182 DAYAAVILLERYF 194
D AA I+L+ +
Sbjct: 123 DKVAAAIILQTFL 135
>gi|420348950|ref|ZP_14850331.1| putative Holliday junction resolvase [Shigella boydii 965-58]
gi|391267136|gb|EIQ26073.1| putative Holliday junction resolvase [Shigella boydii 965-58]
Length = 138
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL ++ + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIRAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|237729880|ref|ZP_04560361.1| conserved hypothetical protein [Citrobacter sp. 30_2]
gi|226908486|gb|EEH94404.1| conserved hypothetical protein [Citrobacter sp. 30_2]
Length = 138
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+GV +G TG A RPL +K + + L+E +E + DE I+GLP + D
Sbjct: 14 SIGVAVGQRITGTA-------RPLPAIKAQDGTPDWSLIERLLKEWQPDEIIVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E P + + R A R+ R G V L DE ++ EA + G ++ + K D+
Sbjct: 67 GTEQPLTARARKFANRIHGRF---GVTVTLHDERLSTVEARSGLFEQGGYRALNKGKVDS 123
Query: 184 YAAVILLERYF 194
+AV++LE YF
Sbjct: 124 ASAVVILESYF 134
>gi|440751026|ref|ZP_20930264.1| Putative Holliday junction resolvase [Mariniradius saccharolyticus
AK6]
gi|436480369|gb|ELP36607.1| Putative Holliday junction resolvase [Mariniradius saccharolyticus
AK6]
Length = 137
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 9/137 (6%)
Query: 63 GFSLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPK 120
G L +DLG RTGLA++ PL + +LE L++ +E+ + +IGLPK
Sbjct: 2 GRVLAIDLGTKRTGLAVTDSLKLIANPLDTIP--THQLEDFLMKYVAKEDVEVIVIGLPK 59
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
D S + +V ++ RL + ++ L+DE TS A+ MI+MG K R+ K
Sbjct: 60 KLDNSANEMTPRVLALKNRLEKVFPQ--LKLALVDERFTSKIALQTMIDMGTKKKDRREK 117
Query: 181 T---DAYAAVILLERYF 194
D +A I+L+ Y
Sbjct: 118 EGNLDKISATIILQSYL 134
>gi|74318598|ref|YP_316338.1| Holliday junction resolvase-like protein [Thiobacillus
denitrificans ATCC 25259]
gi|146325622|sp|Q3SFS3.1|RUVX_THIDA RecName: Full=Putative Holliday junction resolvase
gi|74058093|gb|AAZ98533.1| Holliday junction resolvase YqgF [Thiobacillus denitrificans ATCC
25259]
Length = 145
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 49/136 (36%), Positives = 70/136 (51%), Gaps = 8/136 (5%)
Query: 63 GFSLGVDLGLSRTGLA---LSKGFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGL 118
G L DLGL RTG+A L+ G PLTV++ + +E +A + F++GL
Sbjct: 8 GTVLAFDLGLKRTGVASGELAIGIA-HPLTVIQAESTDARMAAIEKLAAEWQPALFVLGL 66
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P DGSE + R+ A RL R ER V+L+DE TSA A + G+ +
Sbjct: 67 PTRADGSENEMTRVARNFARRLESRF-ERP--VFLIDERLTSATAESELHARGIHGKKNK 123
Query: 179 TKTDAYAAVILLERYF 194
TDA AA ++L+ +F
Sbjct: 124 ALTDAVAAQLILQGFF 139
>gi|294790798|ref|ZP_06755956.1| putative Holliday junction resolvase [Scardovia inopinata F0304]
gi|294458695|gb|EFG27048.1| putative Holliday junction resolvase [Scardovia inopinata F0304]
Length = 166
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 72/142 (50%), Gaps = 11/142 (7%)
Query: 56 KDSLWRGGFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLEL--QLLEIAQREET 111
K S+W LG+DLG +R GLALS P V++ G+ Q++++ + E
Sbjct: 3 KKSVW-----LGLDLGNARIGLALSDPELTFAHPEGVIQAGGDYFYAIDQIVDVIEDREV 57
Query: 112 DEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGW--RVYLLDEHRTSAEAVDRMIN 169
++G P + DG+E + KVR A L+ R E G ++ L DE T+ A D ++
Sbjct: 58 SHIVLGYPLNLDGAEGKSAKKVRRFAQALSRRLEEAGIDSQIELTDERMTTVSAHDLLLQ 117
Query: 170 MGLSKSARQTKTDAYAAVILLE 191
G+S + D +AV++L+
Sbjct: 118 AGMSSRQHRAVVDTQSAVVILQ 139
>gi|87120930|ref|ZP_01076822.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121]
gi|86163768|gb|EAQ65041.1| hypothetical protein MED121_09985 [Marinomonas sp. MED121]
Length = 152
Score = 61.6 bits (148), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVR--PLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G +R G+A+ + P+ +K R G + E+ + + D F++GLP +
Sbjct: 18 LGFDFGTTRIGIAVGQEITATATPINPIKARDGIPNWDTIAEVVKEWQPDGFVVGLPLNM 77
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + R A RL R + Y++DE +S EA ++I G +++ + D
Sbjct: 78 DGTENEMCQRARKFANRLHGRYNKPS---YMMDERLSSYEAKGQVIKEGGNRNFKANSVD 134
Query: 183 AYAAVILLERYF 194
AA ++LE +F
Sbjct: 135 GLAAQMILESWF 146
>gi|429758823|ref|ZP_19291336.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 181
str. F0379]
gi|429173037|gb|EKY14574.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 181
str. F0379]
Length = 156
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 51/154 (33%), Positives = 74/154 (48%), Gaps = 10/154 (6%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFII 116
R G L VD+G R GLA S G PL L + + E+ +++ A E E I+
Sbjct: 1 MRPGVRLAVDVGTVRVGLARSDAGGILALPLETLPRQDDASEINEIVRYAHELEVIEIIV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+ G E + R A +L + E RV L+DE +S E +R++ G+ +
Sbjct: 61 GLPRHMRGGEGISAKGARRYARKLKMVLPE--CRVCLVDERLSSHEGHERLLQAGVERRE 118
Query: 177 RQTKTDAYAAVILLERYFS---MSGQ--GTEIVL 205
+ D AA I+LE MSG+ G E+VL
Sbjct: 119 HRQMIDQVAASIILETALEMERMSGRAPGKELVL 152
>gi|375257347|ref|YP_005016517.1| Holliday junction resolvase-like protein [Klebsiella oxytoca KCTC
1686]
gi|397659946|ref|YP_006500648.1| Holliday junction resolvase [Klebsiella oxytoca E718]
gi|365906825|gb|AEX02278.1| Holliday junction resolvase-like protein [Klebsiella oxytoca KCTC
1686]
gi|394348046|gb|AFN34167.1| Putative Holliday junction resolvase [Klebsiella oxytoca E718]
Length = 138
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 71/138 (51%), Gaps = 6/138 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G LG D G G+A+ + RPL LK + K + ++E +E + + I+GLP
Sbjct: 3 GTFLGFDFGTKSIGVAVGQRITGTARPLPALKAQDGKPDWNIIEKLLKEWQPEAVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A ++ R G ++ L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARNFANKIHGRF---GVQITLHDERLSTVEARAGLFEHGGFRALNKG 119
Query: 180 KTDAYAAVILLERYFSMS 197
D+ +AVI+LE YF S
Sbjct: 120 SVDSASAVIILESYFEQS 137
>gi|340756776|ref|ZP_08693381.1| Holliday junction resolvase [Fusobacterium varium ATCC 27725]
gi|251834043|gb|EES62606.1| Holliday junction resolvase [Fusobacterium varium ATCC 27725]
Length = 139
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+ +D+G R G+A S G PL V+ + K ++ E+ +E T ++G+PKS D
Sbjct: 6 ISLDVGDVRIGVAKSDIMGIVATPLEVIDRKKTKAVKRIKELCTQENTKALVVGIPKSLD 65
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--T 181
G+E Q+ KVR +L G + +DE T+ A DRM+N K A + +
Sbjct: 66 GTEKRQAEKVREFIAKL--NKEIEGLEIIEVDERLTTVSA-DRMLNESNKKGALEKRKVV 122
Query: 182 DAYAAVILLERYF 194
D AA I+L+ +
Sbjct: 123 DKIAAAIILQTFL 135
>gi|300723963|ref|YP_003713277.1| Holliday junction resolvase [Xenorhabdus nematophila ATCC 19061]
gi|297630494|emb|CBJ91159.1| putative Holliday junction resolvase [Xenorhabdus nematophila ATCC
19061]
Length = 139
Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+G +G TG A R L+ K QL+E +E + D I+GLP
Sbjct: 12 GTRSIGAAIGQEVTGTA-------RALSAFKANEGSPNWQLIEKLLKEWQPDLVIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A RL R G +V L DE T+ EA + + G K+ + K
Sbjct: 65 NMDGTEQPVTAQARKFANRLHGRF---GVQVALHDERLTTVEARSHLFDHGGYKALNKGK 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|153005395|ref|YP_001379720.1| Holliday junction resolvase-like protein [Anaeromyxobacter sp.
Fw109-5]
gi|167012689|sp|A7HDE0.1|RUVX_ANADF RecName: Full=Putative Holliday junction resolvase
gi|152028968|gb|ABS26736.1| Holliday junction resolvase YqgF [Anaeromyxobacter sp. Fw109-5]
Length = 137
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 47/132 (35%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
LG+DLG +R GLAL+ RPL+V++ R + +L + RE E ++GLP +
Sbjct: 4 LGLDLGRARIGLALADDVLRTARPLSVVRHRTREADLASIAATLREWEVGTAVVGLPLNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE + R+ A LA RA G V L DE ++ EA R+ G S + + D
Sbjct: 64 DGSEGASARYARAFAEELA-RAT--GVPVELFDERLSTFEAESRLREQGFSARELRGRVD 120
Query: 183 AYAAVILLERYF 194
A AA ++L+ +
Sbjct: 121 AEAAAVILQGWL 132
>gi|374374173|ref|ZP_09631832.1| Holliday junction resolvase [Niabella soli DSM 19437]
gi|373233615|gb|EHP53409.1| Holliday junction resolvase [Niabella soli DSM 19437]
Length = 150
Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D GL RTG+A++ + + + ++L L + E ++ I+G PK+WD S
Sbjct: 18 LAIDYGLKRTGIAVTDPLQIIATGLTTIDSKELIPFLKKYTGEEPVEKIIMGEPKNWDDS 77
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+T + VR ++ + L+DE TS A D M+ MGL K R+ K D
Sbjct: 78 DTHGTPLVRKAVKE--IKKHFPAMPLELVDERYTSKMAKDAMLEMGLKKMQRRNKALVDE 135
Query: 184 YAAVILLERYF 194
AA I+L+ Y
Sbjct: 136 IAATIILQEYL 146
>gi|145354506|ref|XP_001421524.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144581761|gb|ABO99817.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 202
Score = 60.8 bits (146), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 78/177 (44%), Gaps = 28/177 (15%)
Query: 42 SSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKGFCV-RPLTVLKLRGEKLEL 100
SS+E+ L A R + D + +LGVD G R GLA+S G RPL L G
Sbjct: 21 SSLEDELRAARRARGDVI-----ALGVDYGARRVGLAVSNGGAAPRPLRTLTHSGTATTT 75
Query: 101 Q----LLEIAQREETDEFIIGLPKSWDGSETPQSNKVR------SVAGRLAVRAAERGWR 150
+L++A E D ++G+P + + + R +V R A A+ R
Sbjct: 76 STVRAILDVALEECCDRIVVGIPVPPGRAAKDRRGRGRGAVQMHAVCARFAGEVADACAR 135
Query: 151 ----------VYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAYAAVILLERYFSMS 197
VY DE RTS EA +R+ G S D+ +A ILLERYF S
Sbjct: 136 STNAETKALVVYTYDESRTSKEASERIATSGGSN--ENGALDSASAAILLERYFDGS 190
>gi|242278598|ref|YP_002990727.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM
2638]
gi|259495701|sp|C6C125.1|RUVX_DESAD RecName: Full=Putative Holliday junction resolvase
gi|242121492|gb|ACS79188.1| Holliday junction resolvase YqgF [Desulfovibrio salexigens DSM
2638]
Length = 135
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVL-KLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
L +D G R GLA+S P V+ + + + +LLEI + E+ + +IGLP S
Sbjct: 4 LSIDFGTKRVGLAISDPDQIFAFPYKVMERTTRDAMFSELLEIIENEKVGDIVIGLPLSL 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG +T + +VR+ A L R ++L+DE +S A D + GL R+ D
Sbjct: 64 DGEDTLTTRQVRNFAASLERRV---DLPIHLVDERLSSIAAEDELKEAGLWDRKRKKNLD 120
Query: 183 AYAAVILLERYFS 195
+ AA I+LE + +
Sbjct: 121 SQAAKIILETWLA 133
>gi|373496501|ref|ZP_09587047.1| putative Holliday junction resolvase [Fusobacterium sp. 12_1B]
gi|404368669|ref|ZP_10974019.1| putative Holliday junction resolvase [Fusobacterium ulcerans ATCC
49185]
gi|313687963|gb|EFS24798.1| putative Holliday junction resolvase [Fusobacterium ulcerans ATCC
49185]
gi|371965390|gb|EHO82890.1| putative Holliday junction resolvase [Fusobacterium sp. 12_1B]
Length = 139
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+ +D+G R G+A S G PL V+ + K ++ E+ +E T ++G+PKS D
Sbjct: 6 ISLDVGDVRIGVAKSDIMGIVATPLEVIDRKKTKAVKRIKELCIQENTKALVVGIPKSLD 65
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--T 181
G+E Q+ KVR +L G + +DE T+ A DRM+N K A + +
Sbjct: 66 GTEKRQAEKVREFIAKL--NKEIEGLEIIEVDERLTTVSA-DRMLNESNKKGALEKRKVV 122
Query: 182 DAYAAVILLERYF 194
D AA I+L+ +
Sbjct: 123 DKIAAAIILQTFL 135
>gi|375089055|ref|ZP_09735391.1| RNAse H-fold protein YqgF [Dolosigranulum pigrum ATCC 51524]
gi|374560856|gb|EHR32209.1| RNAse H-fold protein YqgF [Dolosigranulum pigrum ATCC 51524]
Length = 139
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 71/135 (52%), Gaps = 9/135 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + + V+ + K + +L E+ Q + D F++GLPK
Sbjct: 4 MGLDVGSKTVGVAVSDLLGWTAQGVEVIPINEAKDQFGLERLTELVQEYQVDGFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQT 179
+ DGS P++ + +L R G VY DE T+ + MI G +S++ R+
Sbjct: 64 NMDGSIGPRAEAAQMYGEKLTDRF---GLPVYFQDERLTTMQVNRMMIEEGNVSRAKRKQ 120
Query: 180 KTDAYAAVILLERYF 194
D AAVI+L+ Y
Sbjct: 121 VVDKLAAVIILQTYM 135
>gi|152994576|ref|YP_001339411.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1]
gi|150835500|gb|ABR69476.1| Holliday junction resolvase YqgF [Marinomonas sp. MWYL1]
Length = 156
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 69/135 (51%), Gaps = 6/135 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G +R G+A+ + +PL LK + G ++ I + + D F++GLP
Sbjct: 24 LGFDFGTTRIGVAIGQSITGTAQPLDPLKAKEGIPNWDEITRIVEEWKPDAFVVGLPLDM 83
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE + R A RL R +++DE +S EA ++I G +++ ++ D
Sbjct: 84 DGSENEMCQRARKFAKRLHGRF---NLPYHMMDERLSSYEAKGQVIARGGNRNFKENSVD 140
Query: 183 AYAAVILLERYFSMS 197
AA ++LE +F+ S
Sbjct: 141 GLAAQMILETWFAES 155
>gi|402840027|ref|ZP_10888498.1| RNAse H domain protein, YqgF family [Klebsiella sp. OBRC7]
gi|423104830|ref|ZP_17092532.1| putative Holliday junction resolvase [Klebsiella oxytoca 10-5242]
gi|376382793|gb|EHS95526.1| putative Holliday junction resolvase [Klebsiella oxytoca 10-5242]
gi|402287263|gb|EJU35719.1| RNAse H domain protein, YqgF family [Klebsiella sp. OBRC7]
Length = 138
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G LG D G G+A+ + RPL LK + K + ++E +E + + I+GLP
Sbjct: 3 GTFLGFDFGTKSIGVAVGQRITGTARPLPALKAQDGKPDWNIIEKLLKEWQPEAVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A ++ R G ++ L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARNFANKIHGRF---GVQIILHDERLSTVEARAGLFEQGGFRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
D+ +AVI+LE YF
Sbjct: 120 SVDSASAVIILESYF 134
>gi|283781683|ref|YP_003372438.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068]
gi|283440136|gb|ADB18578.1| Holliday junction resolvase YqgF [Pirellula staleyi DSM 6068]
Length = 153
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
+GVD G R GLA++ + PL RG + + + + +AQ E +++GLP
Sbjct: 11 IGVDYGTVRIGLAITDPEQKFASPLDNYTRRGGQADARYFQRVAQEERAAAWVVGLPVHT 70
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
GSE+ +S + R A +L V+L DE TSA+A + +I G+S+ R++ D
Sbjct: 71 TGSESQKSTEARQFAKQLEELTK---LPVFLFDERFTSADAEEMLIAAGMSRKERKSHLD 127
Query: 183 AYAAVILLERYF 194
AA ILL +
Sbjct: 128 KLAAQILLSAFL 139
>gi|429094159|ref|ZP_19156712.1| putative Holliday junction resolvase [Cronobacter dublinensis 1210]
gi|429097868|ref|ZP_19159974.1| Putative Holliday junction resolvase [Cronobacter dublinensis 582]
gi|429097871|ref|ZP_19159977.1| Putative Holliday junction resolvase [Cronobacter dublinensis 582]
gi|426284208|emb|CCJ86087.1| Putative Holliday junction resolvase [Cronobacter dublinensis 582]
gi|426284211|emb|CCJ86090.1| Putative Holliday junction resolvase [Cronobacter dublinensis 582]
gi|426740877|emb|CCJ82825.1| putative Holliday junction resolvase [Cronobacter dublinensis 1210]
Length = 138
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 70/139 (50%), Gaps = 6/139 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + D+ I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRVTATARPLNAIKAQNGNPDWSVIERLLKEWQPDDIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A RL R G +V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARTFANRLHGRF---GVKVTLHDERLSTVEARAGLFERGGFRALNKG 119
Query: 180 KTDAYAAVILLERYFSMSG 198
D+ +AV++LE +F G
Sbjct: 120 SVDSASAVVILESFFEQHG 138
>gi|24374858|ref|NP_718901.1| Holliday junction resolvase YqgF [Shewanella oneidensis MR-1]
gi|32130031|sp|Q8EBZ8.1|RUVX_SHEON RecName: Full=Putative Holliday junction resolvase
gi|24349553|gb|AAN56345.1| Holliday junction resolvase YqgF [Shewanella oneidensis MR-1]
Length = 141
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIA---QREETDEFIIGLPKSW 122
LG D G G+A+ + +L ++ EIA Q + D ++GLP +
Sbjct: 7 LGFDFGTKSIGVAVGQQITASATPLLSIKAVDGIPNWEEIAKLIQEWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E +++ R A RL A+ G +++ DE T+ +A R+ +G K+ + + D
Sbjct: 67 DGTEQEMTHRARKFANRLN---AKFGVKIFTQDERLTTTDAKARLFELGGYKALTKGQVD 123
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 124 AVSAVLIIESYF 135
>gi|422828321|ref|ZP_16876493.1| Holliday junction resolvase [Escherichia coli B093]
gi|371615023|gb|EHO03483.1| Holliday junction resolvase [Escherichia coli B093]
Length = 138
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQREE-TDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWLPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|357388366|ref|YP_004903205.1| putative Holliday junction resolvase [Kitasatospora setae KM-6054]
gi|311894841|dbj|BAJ27249.1| putative Holliday junction resolvase [Kitasatospora setae KM-6054]
Length = 157
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 72/138 (52%), Gaps = 5/138 (3%)
Query: 56 KDSLWRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDE 113
++ ++R G + VD+G +R G+A+ G P+ + G + + +L I + + E
Sbjct: 2 EEKVFRRGRRIAVDVGDARIGVAVCDPDGLIATPVETVPA-GGRSQARLKAIVEEYDAVE 60
Query: 114 FIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLS 173
++GLP+S +G E P + KVR AGRLA G R L+DE T+ A + G S
Sbjct: 61 VVVGLPRSLNGKEGPAAAKVREYAGRLAGLLYPVGVR--LVDERMTTVTAAAGLRASGRS 118
Query: 174 KSARQTKTDAYAAVILLE 191
++ D AAV++L+
Sbjct: 119 SKKGRSVIDQAAAVVILQ 136
>gi|147677400|ref|YP_001211615.1| endonuclease [Pelotomaculum thermopropionicum SI]
gi|189046102|sp|A5D3C3.1|RUVX_PELTS RecName: Full=Putative Holliday junction resolvase
gi|146273497|dbj|BAF59246.1| predicted endonuclease [Pelotomaculum thermopropionicum SI]
Length = 154
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 76/138 (55%), Gaps = 7/138 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRG--EKLELQLLEIAQREETDEFIIGLPKS 121
+G+DLG + G+ALS G+ + L V+ ++G E ++ E+ ++ + ++GLP++
Sbjct: 4 MGLDLGDKKIGVALSDPMGWTAQGLDVIAVKGPPEASVERISELVRQYGVGKIVVGLPRN 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
+GS P++ + R+ AG LA V L DE T+ EA +I LS++ R+
Sbjct: 64 MNGSFGPRAERARAFAGCLA---GALNLPVELWDERMTTLEAEKLLIEADLSRARRRQVI 120
Query: 182 DAYAAVILLERYFSMSGQ 199
D AAV++L+ + G+
Sbjct: 121 DKMAAVLILQSFLDSQGR 138
>gi|392968982|ref|ZP_10334398.1| Holliday junction resolvase YqgF [Fibrisoma limi BUZ 3]
gi|387843344|emb|CCH56452.1| Holliday junction resolvase YqgF [Fibrisoma limi BUZ 3]
Length = 137
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 70/136 (51%), Gaps = 14/136 (10%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL-QLLEIAQR----EETDEFIIGLPK 120
+ +D G RTG+A++ PL ++ E + QLL+ +R E + F++GLPK
Sbjct: 5 MAIDYGQKRTGIAVTD-----PLQLIATALETVPTHQLLDYLKRYVVTEPVEAFVVGLPK 59
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
DG++T + +VRS RL + A VY DE TS A+ MI G +K R+ K
Sbjct: 60 RLDGTDTDNTPRVRSFVTRL--QTALPDIPVYWHDERFTSKMAMQAMITNGSTKKDRRDK 117
Query: 181 --TDAYAAVILLERYF 194
D +A I+L+ Y
Sbjct: 118 GNLDKVSAAIILQSYM 133
>gi|85373365|ref|YP_457427.1| Holliday junction resolvase-like protein [Erythrobacter litoralis
HTCC2594]
gi|84786448|gb|ABC62630.1| hypothetical protein ELI_02690 [Erythrobacter litoralis HTCC2594]
Length = 167
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 48/148 (32%), Positives = 72/148 (48%), Gaps = 7/148 (4%)
Query: 57 DSLWRGGFSLGVDLGLSRTGLALSKG---FCVRPLTVLKLRGEKLELQLLEIAQREETDE 113
D+L GG L +DLG G A S F T+ + R K + +L EI
Sbjct: 17 DALPDGGVLLALDLGTKTIGTATSDAGWRFATAGKTLPRGRFGKDKAKLQEIVSSRNVAG 76
Query: 114 FIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLS 173
++GLP++ DGSE P++ R+ A L A G V L DE ++ A MI +S
Sbjct: 77 LVLGLPRNMDGSEGPRAQASRAYARNL---AEAFGLPVLLWDERWSTQSAESAMIGQDMS 133
Query: 174 KSARQTKTDAYAAVILLERYF-SMSGQG 200
++ R K D++AA I L+ +++G G
Sbjct: 134 RAKRAEKIDSHAAAIFLQAALDTLAGGG 161
>gi|432477195|ref|ZP_19719187.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE208]
gi|432519098|ref|ZP_19756280.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE228]
gi|432776015|ref|ZP_20010279.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE54]
gi|432914269|ref|ZP_20119809.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE190]
gi|433020049|ref|ZP_20208221.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE105]
gi|433160033|ref|ZP_20344862.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE177]
gi|431003324|gb|ELD18810.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE208]
gi|431049495|gb|ELD59457.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE228]
gi|431316535|gb|ELG04340.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE54]
gi|431437800|gb|ELH19308.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE190]
gi|431529073|gb|ELI05777.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE105]
gi|431675570|gb|ELJ41701.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE177]
Length = 138
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + L+E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNLIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ D +E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDDTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|308188042|ref|YP_003932173.1| Holliday junction resolvase [Pantoea vagans C9-1]
gi|308058552|gb|ADO10724.1| putative Holliday junction resolvase [Pantoea vagans C9-1]
Length = 139
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLPKSW 122
LG D G G+A+ + RPLT +K + + Q++E +E +F++ GLP +
Sbjct: 7 LGFDFGTKSIGVAVGQELTGSARPLTAIKAQDGIPDWQVIEKLLKEWQPDFVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P +++ R A RL R G RV L DE ++ EA + G ++ + D
Sbjct: 67 DGTEQPLTDRARKFANRLHGRF---GIRVELQDERLSTVEARAGLFERGGYRALNKGSVD 123
Query: 183 AYAAVILLERYF 194
+ +A I+L+ +F
Sbjct: 124 SQSAAIILQDWF 135
>gi|423110309|ref|ZP_17098004.1| putative Holliday junction resolvase [Klebsiella oxytoca 10-5243]
gi|423116243|ref|ZP_17103934.1| putative Holliday junction resolvase [Klebsiella oxytoca 10-5245]
gi|376378425|gb|EHS91184.1| putative Holliday junction resolvase [Klebsiella oxytoca 10-5245]
gi|376380294|gb|EHS93042.1| putative Holliday junction resolvase [Klebsiella oxytoca 10-5243]
Length = 138
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 71/135 (52%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G LG D G G+A+ + RPL LK + K + ++E +E + ++ ++GLP
Sbjct: 3 GTFLGFDFGTKSIGVAVGQRITGTARPLPALKAQDGKPDWNIIEKLLKEWQPEKVVVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A ++ R G ++ L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARNFANKIHGRF---GVQIILHDERLSTVEARAGLFEHGGFRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
D+ +AVI+LE YF
Sbjct: 120 SIDSASAVIILESYF 134
>gi|298530269|ref|ZP_07017671.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans
ASO3-1]
gi|298509643|gb|EFI33547.1| Holliday junction resolvase YqgF [Desulfonatronospira thiodismutans
ASO3-1]
Length = 140
Score = 60.1 bits (144), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG+D G+ R GLA+S KG V PL T+ + E L L+LL I Q + ++GLP
Sbjct: 4 LGIDFGIKRVGLAVSDEKGKMVFPLKTIHRSTRENLFLELLNIIQERGIEAIVLGLPLGP 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG ++ + + L R +Y ++E TS EA D + G+ ++ D
Sbjct: 64 DGEKSLTCRQAENFMQSLDRRT---DLPIYTVNEAYTSMEAEDILNRCGIRVEKQKESLD 120
Query: 183 AYAAVILLERYFS 195
AAVI+LE + +
Sbjct: 121 QAAAVIILESFLA 133
>gi|206577149|ref|YP_002236600.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
342]
gi|226730741|sp|B5XUA1.1|RUVX_KLEP3 RecName: Full=Putative Holliday junction resolvase
gi|206566207|gb|ACI07983.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae
342]
Length = 138
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G LG D G G+A+ + RPL LK + K + ++E +E + + I+GLP
Sbjct: 3 GTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A ++ R G + L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARNFANKIHGRF---GVAIVLHDERLSTVEARAGLFEHGGYRALNKG 119
Query: 180 KTDAYAAVILLERYFSMS 197
D+ +AV++LE YF S
Sbjct: 120 SVDSASAVVILESYFEQS 137
>gi|158320692|ref|YP_001513199.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
gi|158140891|gb|ABW19203.1| Holliday junction resolvase YqgF [Alkaliphilus oremlandii OhILAs]
Length = 139
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 71/133 (53%), Gaps = 5/133 (3%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKS 121
S+G+D+G G+A+S G+ + L ++ G K +LQ LE+ +E + ++ ++GLPK+
Sbjct: 4 SMGLDVGDKTIGVAISDLFGWTAQGLETIQRIGIKKDLQRLEVIIKEHDINKIVVGLPKN 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
+G+ PQ KV RL R + + L DE T+ A +I +S+ R+
Sbjct: 64 MNGTIGPQGEKVLEFNERLKGRFKDV--EIVLWDERLTTVAAERSLIEADVSRKKRKEVI 121
Query: 182 DAYAAVILLERYF 194
D AAV +L+ Y
Sbjct: 122 DKMAAVYILQGYL 134
>gi|329296973|ref|ZP_08254309.1| Holliday junction resolvase YqgF [Plautia stali symbiont]
Length = 138
Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKSW 122
LG D G G+A+ + RPLT LK + + +L+ ++ + D ++GLP +
Sbjct: 7 LGFDFGTKSIGVAIGQQLTGTARPLTALKAQDGTPDWELIGKLLKEWRPDCVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE P + + R A RL R G RV L DE ++ EA + G ++ ++ D
Sbjct: 67 DGSEQPLTARARKFANRLHGRF---GVRVELQDERLSTVEARADLFERGGYRALQKGHID 123
Query: 183 AYAAVILLERYF 194
+ +AVI+L+ +F
Sbjct: 124 SQSAVIILQDWF 135
>gi|423122085|ref|ZP_17109769.1| putative Holliday junction resolvase [Klebsiella oxytoca 10-5246]
gi|376392714|gb|EHT05376.1| putative Holliday junction resolvase [Klebsiella oxytoca 10-5246]
Length = 138
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G LG D G G+A+ + RPL LK + K + ++E +E + + I+GLP
Sbjct: 3 GTLLGFDFGTKSIGVAVGQRITGTARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A ++ R G ++ L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARNFANKIHGRF---GVKITLHDERLSTVEARAGLFEHGGFRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
D+ +AVI+LE YF
Sbjct: 120 SIDSASAVIILESYF 134
>gi|170765861|ref|ZP_02900672.1| putative Holliday junction resolvase [Escherichia albertii TW07627]
gi|170125007|gb|EDS93938.1| putative Holliday junction resolvase [Escherichia albertii TW07627]
Length = 138
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQREE-TDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWLPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVDVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|288933582|ref|YP_003437641.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22]
gi|290511351|ref|ZP_06550720.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
gi|288888311|gb|ADC56629.1| Holliday junction resolvase YqgF [Klebsiella variicola At-22]
gi|289776344|gb|EFD84343.1| conserved hypothetical protein [Klebsiella sp. 1_1_55]
Length = 139
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G LG D G G+A+ + RPL LK + K + ++E +E + + I+GLP
Sbjct: 4 GTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A ++ R G + L DE ++ EA + G ++ +
Sbjct: 64 LNMDGTEQPLTARARNFANKIHGRF---GVAIVLHDERLSTVEARAGLFEHGGYRALNKG 120
Query: 180 KTDAYAAVILLERYFSMS 197
D+ +AV++LE YF S
Sbjct: 121 SVDSASAVVILESYFEQS 138
>gi|421726345|ref|ZP_16165519.1| Holliday junction resolvase-like protein [Klebsiella oxytoca M5al]
gi|410372937|gb|EKP27644.1| Holliday junction resolvase-like protein [Klebsiella oxytoca M5al]
Length = 138
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G LG D G G+A+ + RPL LK + K + ++E +E + + I+GLP
Sbjct: 3 GTFLGFDFGTKSIGVAVGQRITGTARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A ++ R G ++ L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARNFANKIHGRF---GVQITLHDERLSTVEARAGLFEQGGFRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
D+ +AVI+LE YF
Sbjct: 120 SVDSASAVIILESYF 134
>gi|152971900|ref|YP_001337009.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238896479|ref|YP_002921217.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|262042599|ref|ZP_06015755.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|365140443|ref|ZP_09346498.1| RNAse H-fold protein YqgF [Klebsiella sp. 4_1_44FAA]
gi|378980610|ref|YP_005228751.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae HS11286]
gi|386036530|ref|YP_005956443.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
KCTC 2242]
gi|402779022|ref|YP_006634568.1| Holliday junction resolvase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|419974914|ref|ZP_14490329.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|419979011|ref|ZP_14494305.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|419985951|ref|ZP_14501088.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|419990777|ref|ZP_14505747.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|419996383|ref|ZP_14511185.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|420002256|ref|ZP_14516908.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|420008274|ref|ZP_14522764.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|420014382|ref|ZP_14528689.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|420019551|ref|ZP_14533743.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|420025403|ref|ZP_14539412.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|420030975|ref|ZP_14544799.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|420036686|ref|ZP_14550345.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|420042778|ref|ZP_14556270.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|420048449|ref|ZP_14561762.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|420054213|ref|ZP_14567387.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|420059715|ref|ZP_14572720.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|420065486|ref|ZP_14578291.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|420073376|ref|ZP_14586003.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|420079804|ref|ZP_14592243.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|420084938|ref|ZP_14597182.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|421913260|ref|ZP_16342950.1| Putative Holliday junction resolvase YggF [Klebsiella pneumoniae
subsp. pneumoniae ST258-K26BO]
gi|421917695|ref|ZP_16347244.1| Putative Holliday junction resolvase YggF [Klebsiella pneumoniae
subsp. pneumoniae ST258-K28BO]
gi|424832370|ref|ZP_18257098.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|424931824|ref|ZP_18350196.1| Putative Holliday junction resolvase 2 [Klebsiella pneumoniae
subsp. pneumoniae KpQ3]
gi|425074936|ref|ZP_18478039.1| YqgF family RNAse H domain-containing protein [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|425083173|ref|ZP_18486270.1| YqgF family RNAse H domain-containing protein [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|425085572|ref|ZP_18488665.1| YqgF family RNAse H domain-containing protein [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|425093256|ref|ZP_18496340.1| YqgF family RNAse H domain-containing protein [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|428151596|ref|ZP_18999310.1| Putative Holliday junction resolvase [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|428935147|ref|ZP_19008637.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
JHCK1]
gi|428938000|ref|ZP_19011133.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
VA360]
gi|449049944|ref|ZP_21731540.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
hvKP1]
gi|167012731|sp|A6TDV8.1|RUVX_KLEP7 RecName: Full=Putative Holliday junction resolvase
gi|150956749|gb|ABR78779.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae MGH 78578]
gi|238548799|dbj|BAH65150.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae NTUH-K2044]
gi|259040033|gb|EEW41148.1| conserved hypothetical protein [Klebsiella pneumoniae subsp.
rhinoscleromatis ATCC 13884]
gi|339763658|gb|AEJ99878.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
KCTC 2242]
gi|363653759|gb|EHL92708.1| RNAse H-fold protein YqgF [Klebsiella sp. 4_1_44FAA]
gi|364520021|gb|AEW63149.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae HS11286]
gi|397344399|gb|EJJ37533.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH1]
gi|397349831|gb|EJJ42923.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH4]
gi|397350589|gb|EJJ43677.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH2]
gi|397365072|gb|EJJ57698.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH6]
gi|397366021|gb|EJJ58641.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH5]
gi|397371092|gb|EJJ63635.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH7]
gi|397378483|gb|EJJ70695.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH9]
gi|397383327|gb|EJJ75468.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH8]
gi|397388764|gb|EJJ80723.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH10]
gi|397397407|gb|EJJ89083.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH11]
gi|397401208|gb|EJJ92840.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH12]
gi|397406512|gb|EJJ97932.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH14]
gi|397414988|gb|EJK06179.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH17]
gi|397415825|gb|EJK07005.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH16]
gi|397423031|gb|EJK13972.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH18]
gi|397431358|gb|EJK22034.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH20]
gi|397435056|gb|EJK25682.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH19]
gi|397438014|gb|EJK28544.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH21]
gi|397443280|gb|EJK33606.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH22]
gi|397449725|gb|EJK39851.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
subsp. pneumoniae KPNIH23]
gi|402539966|gb|AFQ64115.1| Putative Holliday junction resolvase [Klebsiella pneumoniae subsp.
pneumoniae 1084]
gi|405595139|gb|EKB68529.1| YqgF family RNAse H domain-containing protein [Klebsiella
pneumoniae subsp. pneumoniae WGLW1]
gi|405599492|gb|EKB72668.1| YqgF family RNAse H domain-containing protein [Klebsiella
pneumoniae subsp. pneumoniae WGLW2]
gi|405607604|gb|EKB80573.1| YqgF family RNAse H domain-containing protein [Klebsiella
pneumoniae subsp. pneumoniae WGLW3]
gi|405610801|gb|EKB83590.1| YqgF family RNAse H domain-containing protein [Klebsiella
pneumoniae subsp. pneumoniae WGLW5]
gi|407806011|gb|EKF77262.1| Putative Holliday junction resolvase 2 [Klebsiella pneumoniae
subsp. pneumoniae KpQ3]
gi|410112800|emb|CCM85575.1| Putative Holliday junction resolvase YggF [Klebsiella pneumoniae
subsp. pneumoniae ST258-K26BO]
gi|410119980|emb|CCM89869.1| Putative Holliday junction resolvase YggF [Klebsiella pneumoniae
subsp. pneumoniae ST258-K28BO]
gi|414709811|emb|CCN31515.1| conserved hypothetical protein TIGR00250 [Klebsiella pneumoniae
subsp. pneumoniae Ecl8]
gi|426301228|gb|EKV63476.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
JHCK1]
gi|426306421|gb|EKV68524.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
VA360]
gi|427538470|emb|CCM95448.1| Putative Holliday junction resolvase [Klebsiella pneumoniae subsp.
pneumoniae ST512-K30BO]
gi|448876687|gb|EMB11670.1| Holliday junction resolvase-like protein [Klebsiella pneumoniae
hvKP1]
Length = 138
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G LG D G G+A+ + RPL LK + K + ++E +E + + I+GLP
Sbjct: 3 GTFLGFDFGTKSIGVAVGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A ++ R G + L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARNFANKIHGRF---GVAILLHDERLSTVEARAGLFEHGGYRALNKG 119
Query: 180 KTDAYAAVILLERYFSMS 197
D+ +AV++LE YF S
Sbjct: 120 SVDSASAVVILESYFEQS 137
>gi|326329807|ref|ZP_08196127.1| putative Holliday junction resolvase [Nocardioidaceae bacterium
Broad-1]
gi|325952393|gb|EGD44413.1| putative Holliday junction resolvase [Nocardioidaceae bacterium
Broad-1]
Length = 156
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 49/114 (42%), Positives = 61/114 (53%), Gaps = 9/114 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEKLELQLL--EIAQREETDEF 114
R G LG+D G +R G+A S GF PL TV K RG+ LQ + EI + E
Sbjct: 1 MRHGVRLGLDPGDARIGVARSDPTGFLATPLETVKKGRGDLARLQAIVAEIGEESTMLEV 60
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRT--SAEAVDR 166
++GLP+S G E P + KVR A LA R A V L+DE T SAEA+ R
Sbjct: 61 VVGLPRSLKGGENPATAKVRDFAASLARRVAP--VPVRLVDERLTTVSAEAMLR 112
>gi|187778852|ref|ZP_02995325.1| hypothetical protein CLOSPO_02447 [Clostridium sporogenes ATCC
15579]
gi|187772477|gb|EDU36279.1| RNAse H domain protein, YqgF family [Clostridium sporogenes ATCC
15579]
Length = 137
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+ALS GF + +T ++ + E +L+ + +I + E D + GLPK+
Sbjct: 4 LGLDIGDRTIGVALSDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV + + + DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTLGPQSEKVLEFCDLIKEHV---NIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 183 AYAAVILLERYF 194
AA +L+ Y
Sbjct: 121 KMAATYILQGYL 132
>gi|221632739|ref|YP_002521960.1| hypothetical protein trd_0729 [Thermomicrobium roseum DSM 5159]
gi|221156262|gb|ACM05389.1| conserved hypothetical protein TIGR00250 [Thermomicrobium roseum
DSM 5159]
Length = 161
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 73/137 (53%), Gaps = 8/137 (5%)
Query: 61 RGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGL 118
R G ++G+D+G R G+A+S G PL + L + LE +L+E+ R + ++GL
Sbjct: 5 RLGRTMGLDVGGRRVGVAISDEMGMIASPLATIDLDRDGLE-RLVELISRYDPVLIVVGL 63
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWR-VYLLDEHRTSAEAVDRMINMGLSKSAR 177
P + G E Q+ + ++ A RL AER R + DE TS+ A + + G+ + R
Sbjct: 64 PVTMRGREGSQAVETKAFAARL----AERIDRPIVFWDERLTSSAAERLLTDAGVGRKRR 119
Query: 178 QTKTDAYAAVILLERYF 194
+ DA AA +LL+ Y
Sbjct: 120 RELVDAVAAALLLQSYL 136
>gi|419958579|ref|ZP_14474642.1| Holliday junction resolvase-like protein [Enterobacter cloacae
subsp. cloacae GS1]
gi|388606482|gb|EIM35689.1| Holliday junction resolvase-like protein [Enterobacter cloacae
subsp. cloacae GS1]
Length = 138
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPLT LK + L+E +E + D+ I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLTALKANDGTPDWNLIERLLKEWQPDDVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A ++ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANKIHGRF---GVSVKLHDERLSTVEARAGLFEHGGFRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
D+ +AVI+LE YF
Sbjct: 120 SVDSASAVIILESYF 134
>gi|296104613|ref|YP_003614759.1| putative holliday junction resolvase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|334125559|ref|ZP_08499548.1| crossover junction endodeoxyribonuclease [Enterobacter hormaechei
ATCC 49162]
gi|354725123|ref|ZP_09039338.1| Holliday junction resolvase-like protein [Enterobacter mori LMG
25706]
gi|392980612|ref|YP_006479200.1| Holliday junction resolvase-like protein [Enterobacter cloacae
subsp. dissolvens SDM]
gi|401765163|ref|YP_006580170.1| Holliday junction resolvase-like protein [Enterobacter cloacae
subsp. cloacae ENHKU01]
gi|295059072|gb|ADF63810.1| putative holliday junction resolvase [Enterobacter cloacae subsp.
cloacae ATCC 13047]
gi|295097488|emb|CBK86578.1| conserved hypothetical protein TIGR00250 [Enterobacter cloacae
subsp. cloacae NCTC 9394]
gi|333387022|gb|EGK58226.1| crossover junction endodeoxyribonuclease [Enterobacter hormaechei
ATCC 49162]
gi|392326545|gb|AFM61498.1| Holliday junction resolvase-like protein [Enterobacter cloacae
subsp. dissolvens SDM]
gi|400176697|gb|AFP71546.1| Holliday junction resolvase-like protein [Enterobacter cloacae
subsp. cloacae ENHKU01]
Length = 138
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPLT LK + L+E +E + D+ I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLTALKANDGTPDWNLIERLLKEWQPDDVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A ++ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANKIHGRF---GVSVKLHDERLSTVEARAGLFEHGGFRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
D+ +AVI+LE YF
Sbjct: 120 SVDSASAVIILESYF 134
>gi|378581212|ref|ZP_09829862.1| putative Holliday junction resolvase [Pantoea stewartii subsp.
stewartii DC283]
gi|377816291|gb|EHT99396.1| putative Holliday junction resolvase [Pantoea stewartii subsp.
stewartii DC283]
Length = 138
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + RPL+ LK + G LQ+ ++ + + D ++GLP +
Sbjct: 7 LGFDFGTKSIGVAVGQQLTGSARPLSALKAQDGTPDWLQIEKLLKEWQPDFVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE P + + R A RL R G RV L DE ++ EA + G ++ + D
Sbjct: 67 DGSEQPLTARARKFANRLHGRF---GIRVELQDERLSTVEARAGLFERGGYRALNKGSVD 123
Query: 183 AYAAVILLERYF 194
+ +A I+L+ +F
Sbjct: 124 SQSAAIILQDWF 135
>gi|317131029|ref|YP_004090343.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3]
gi|315469008|gb|ADU25612.1| Holliday junction resolvase YqgF [Ethanoligenens harbinense YUAN-3]
Length = 143
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 65/135 (48%), Gaps = 12/135 (8%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLL----EIAQREETDEFIIGLP 119
+ VD G +RTG+ALS GF P+ V+ E E Q+L E R + ++GLP
Sbjct: 4 MAVDYGDARTGIALSDPSGFLASPVCVIH---ETDETQILAKTAEQVARTGAERVVVGLP 60
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ +G+ P++ K ++ A L A G V L DE RT+ A R+
Sbjct: 61 KNMNGTLGPRAEKAQAFAKAL---EAACGVPVLLFDERRTTLTAQVYFNATNTRGKKRKN 117
Query: 180 KTDAYAAVILLERYF 194
DA AA I+L+ Y
Sbjct: 118 SIDAAAATIILQDYL 132
>gi|261342366|ref|ZP_05970224.1| putative Holliday junction resolvase [Enterobacter cancerogenus
ATCC 35316]
gi|288315001|gb|EFC53939.1| putative Holliday junction resolvase [Enterobacter cancerogenus
ATCC 35316]
Length = 138
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+GV +G TG A RPLT LK + L+E +E + D+ I+GLP + D
Sbjct: 14 SIGVAVGQRITGTA-------RPLTALKANDGTPDWNLIERLLKEWQPDDVIVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E P + + R A ++ R G V L DE ++ EA + G ++ + D+
Sbjct: 67 GTEQPLTARARKFANKIHGRF---GVSVKLHDERLSTVEARAGLFEHGGFRALNKGSVDS 123
Query: 184 YAAVILLERYF 194
+AVI+LE YF
Sbjct: 124 ASAVIILESYF 134
>gi|332654093|ref|ZP_08419837.1| putative Holliday junction resolvase [Ruminococcaceae bacterium
D16]
gi|332517179|gb|EGJ46784.1| putative Holliday junction resolvase [Ruminococcaceae bacterium
D16]
Length = 140
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+ +D G + TG+A+S GF T + R ++ L +L + + + D+ ++G P++
Sbjct: 4 MAIDYGDAHTGVAISDPTGFLAGMTTTIHSRKAEVVLSELARLVKEHQVDQLVMGFPRNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P++ R A ++ A G L DE RT+ +A + G + R+ D
Sbjct: 64 DGTEGPRAQLYRDFAAQV---AQATGLEPVLWDERRTTVDAHRILAEGGKNAKKRKKTVD 120
Query: 183 AYAAVILLERYF 194
A AA ++LE Y
Sbjct: 121 AVAASLILEGYL 132
>gi|148284294|ref|YP_001248384.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi
str. Boryong]
gi|167012743|sp|A5CCV6.1|RUVX_ORITB RecName: Full=Putative Holliday junction resolvase
gi|146739733|emb|CAM79564.1| holliday junction resolvase [Orientia tsutsugamushi str. Boryong]
Length = 157
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 82/155 (52%), Gaps = 17/155 (10%)
Query: 41 LSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEK 97
++S+ EFL A +K+ LG+D G + G+A+S + PL T+L ++
Sbjct: 3 INSISEFLQAADIKKQ--------ILGIDFGEKKVGVAISNIEHTVAMPLQTILATNQDR 54
Query: 98 LELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157
+ ++ EIA +IGLP DG+ET Q+++V+ A +LA + ++L DE
Sbjct: 55 VN-KIQEIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFANKLANKLL---LPIFLCDE- 109
Query: 158 RTSAEAVDRMINMG-LSKSARQTKTDAYAAVILLE 191
R +++A + ++ +G + + R D AA I+LE
Sbjct: 110 RLTSKAANNLLKIGNIKRKVRNAIDDRVAASIILE 144
>gi|296133403|ref|YP_003640650.1| Holliday junction resolvase YqgF [Thermincola potens JR]
gi|296031981|gb|ADG82749.1| Holliday junction resolvase YqgF [Thermincola potens JR]
Length = 133
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 72/131 (54%), Gaps = 7/131 (5%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
LG+D+G R G+A+S + LTV+K +GE+L +L I ++ E E ++GLPK+ D
Sbjct: 4 LGLDVGTKRIGVAVSDPLRLTAQGLTVIK-KGEELT-ELPRIIEQMEVSEIVVGLPKNMD 61
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
GS P++ ++ + +L V+ DE T+ A ++ LS++ R+ D
Sbjct: 62 GSLGPKAQEILELTEKL---RETLQLPVHTYDERLTTVAAERILLEADLSRAKRRQVVDK 118
Query: 184 YAAVILLERYF 194
AAV++L+ Y
Sbjct: 119 TAAVLILQGYL 129
>gi|189184333|ref|YP_001938118.1| Holliday junction resolvase-like protein [Orientia tsutsugamushi
str. Ikeda]
gi|226731634|sp|B3CU37.1|RUVX_ORITI RecName: Full=Putative Holliday junction resolvase
gi|189181104|dbj|BAG40884.1| putative Hollyday junction resolvase [Orientia tsutsugamushi str.
Ikeda]
Length = 157
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 46/155 (29%), Positives = 81/155 (52%), Gaps = 17/155 (10%)
Query: 41 LSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEK 97
++S+ EFL A +K+ LG+D G + G+A+S + PL T+ ++
Sbjct: 3 INSIIEFLQAADIKKQ--------ILGIDFGEKKVGVAISNIEHTVAMPLQTIFATNQDR 54
Query: 98 LELQLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH 157
+ ++ EIA +IGLP DG+ET Q+++V+ A +LA + ++L DE
Sbjct: 55 IN-KIQEIAVAYNIGAIVIGLPFKLDGTETSQTHRVKDFANKLANKLL---LPIFLCDE- 109
Query: 158 RTSAEAVDRMINMG-LSKSARQTKTDAYAAVILLE 191
R +++A + ++ MG + + R D AA I+LE
Sbjct: 110 RLTSKAANNLLKMGNIKRKVRNAIDDRVAASIILE 144
>gi|326796931|ref|YP_004314751.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1]
gi|326547695|gb|ADZ92915.1| Holliday junction resolvase [Marinomonas mediterranea MMB-1]
Length = 159
Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKL-RGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G +R G+A+ + + RPL+ LK G + ++ E D F++GLP +
Sbjct: 25 LGFDFGTTRIGVAIGQNVTMSARPLSPLKANEGIPNWDTIAKLVAEWEPDCFVVGLPLNM 84
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE + R A RL R +++DE +S +A ++I G ++ ++ D
Sbjct: 85 DGSENEMCQRARKFAKRLHGRYNR---PYHMMDERLSSYDAKGQVIAQGGHRNFKENSVD 141
Query: 183 AYAAVILLERYFS 195
AA +++E +F+
Sbjct: 142 GLAAQLIIETWFA 154
>gi|428175684|gb|EKX44572.1| hypothetical protein GUITHDRAFT_52173, partial [Guillardia theta
CCMP2712]
Length = 145
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 36/142 (25%), Positives = 71/142 (50%), Gaps = 4/142 (2%)
Query: 61 RGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEK--LELQLLEIAQREETDEFIIGL 118
+G ++GVD G RTG+ S G+ RPL V++ + + ++ E ++E ++GL
Sbjct: 5 KGVKTIGVDHGRRRTGICASVGYAPRPLRVIQHNDDNKFVATEIAEEVRKEAAQHIVVGL 64
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P G E Q+N R L + A ++L DE ++ +A +++ ++G + +
Sbjct: 65 PLDSQGREGEQANYTRVFVECL--KQACPQCTIFLWDERYSTVDATEKLRSLGYNSFDMK 122
Query: 179 TKTDAYAAVILLERYFSMSGQG 200
D A++ +L ++ G+G
Sbjct: 123 GMIDVVASIGILTDFYHKDGKG 144
>gi|365972036|ref|YP_004953598.1| Holliday junction resolvase [Enterobacter cloacae EcWSU1]
gi|365750949|gb|AEW75176.1| Putative Holliday junction resolvase [Enterobacter cloacae EcWSU1]
Length = 138
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPLT LK + L+E +E + D+ I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLTALKASDGTPDWNLIERLLKEWQPDDVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A ++ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANKIHGRF---GVSVKLHDERLSTVEARAGLFEHGGFRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
D+ +AVI+LE YF
Sbjct: 120 SVDSASAVIILESYF 134
>gi|373112645|ref|ZP_09526875.1| RNAse H-fold protein YqgF [Fusobacterium necrophorum subsp.
funduliforme 1_1_36S]
gi|371655533|gb|EHO20881.1| RNAse H-fold protein YqgF [Fusobacterium necrophorum subsp.
funduliforme 1_1_36S]
Length = 130
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 70/131 (53%), Gaps = 7/131 (5%)
Query: 70 LGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGSET 127
+G R G+A S G PL + R EK +++++ + E T ++G+PKS DGSE
Sbjct: 1 MGDVRIGVAKSDPLGMLAIPLETIDRRKEKPVKRIMQLCEEENTKSIVVGIPKSLDGSEK 60
Query: 128 PQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDAYA 185
Q+ KVR A+++A G + +DE T+ A DR++ K A + + D A
Sbjct: 61 RQAEKVRIFIH--ALKSAIPGVEILEVDERFTTVTA-DRILTEMNRKGALEKRKVVDKVA 117
Query: 186 AVILLERYFSM 196
A ++L++Y +M
Sbjct: 118 ASLILQQYLNM 128
>gi|311748399|ref|ZP_07722184.1| putative Holliday junction resolvase [Algoriphagus sp. PR1]
gi|126576911|gb|EAZ81159.1| putative Holliday junction resolvase [Algoriphagus sp. PR1]
Length = 137
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 72/140 (51%), Gaps = 21/140 (15%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLE-LQLLEIAQ----REETDEFIIGLPK 120
L +DLG RTGLA++ PL +L E +E +L++ + +EE D ++GLP
Sbjct: 5 LAIDLGTKRTGLAVTD-----PLKMLANPLETIETFKLIDFIKAYIAKEEVDTLVLGLPT 59
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGW---RVYLLDEHRTSAEAVDRMINMGLSKSAR 177
+G + + KV ++ +L E+ + +V L+DE TS A+ MI MG K R
Sbjct: 60 KLNGKDNEMTPKVMAMKTKL-----EKNFPSQKVELVDERFTSKMAMQSMITMGSKKKDR 114
Query: 178 QTKT---DAYAAVILLERYF 194
+ K D +A I+L+ Y
Sbjct: 115 REKAGNLDKVSAAIILQSYL 134
>gi|46014949|pdb|1NU0|A Chain A, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of
Yqgf From Escherichia Coli, A Hypothetical Protein
gi|46014950|pdb|1NU0|B Chain B, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of
Yqgf From Escherichia Coli, A Hypothetical Protein
Length = 138
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 11/133 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RPL +K + + ++E +E + DE I+GLP
Sbjct: 11 GTKSIGVAVGQRITGTA-------RPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ + K
Sbjct: 64 NXDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 181 TDAYAAVILLERY 193
D+ +AVI+LE Y
Sbjct: 121 VDSASAVIILESY 133
>gi|148380517|ref|YP_001255058.1| Holliday junction resolvase-like protein [Clostridium botulinum A
str. ATCC 3502]
gi|153933531|ref|YP_001384804.1| Holliday junction resolvase-like protein [Clostridium botulinum A
str. ATCC 19397]
gi|153935898|ref|YP_001388274.1| Holliday junction resolvase-like protein [Clostridium botulinum A
str. Hall]
gi|153940927|ref|YP_001391859.1| Holliday junction resolvase-like protein [Clostridium botulinum F
str. Langeland]
gi|168180549|ref|ZP_02615213.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum
NCTC 2916]
gi|168182640|ref|ZP_02617304.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf]
gi|170757368|ref|YP_001782177.1| Holliday junction resolvase-like protein [Clostridium botulinum B1
str. Okra]
gi|170760496|ref|YP_001787880.1| Holliday junction resolvase-like protein [Clostridium botulinum A3
str. Loch Maree]
gi|226949917|ref|YP_002805008.1| Holliday junction resolvase-like protein [Clostridium botulinum A2
str. Kyoto]
gi|237796000|ref|YP_002863552.1| Holliday junction resolvase-like protein [Clostridium botulinum Ba4
str. 657]
gi|384462867|ref|YP_005675462.1| hypothetical protein CBF_2617 [Clostridium botulinum F str. 230613]
gi|167012712|sp|A7FWJ3.1|RUVX_CLOB1 RecName: Full=Putative Holliday junction resolvase
gi|167012713|sp|A5I4Z3.1|RUVX_CLOBH RecName: Full=Putative Holliday junction resolvase
gi|167012714|sp|A7GGE9.1|RUVX_CLOBL RecName: Full=Putative Holliday junction resolvase
gi|226725504|sp|B1IJG5.1|RUVX_CLOBK RecName: Full=Putative Holliday junction resolvase
gi|226725505|sp|B1KXB5.1|RUVX_CLOBM RecName: Full=Putative Holliday junction resolvase
gi|254767507|sp|C1FTB8.1|RUVX_CLOBJ RecName: Full=Putative Holliday junction resolvase
gi|259495699|sp|C3L148.1|RUVX_CLOB6 RecName: Full=Putative Holliday junction resolvase
gi|148290001|emb|CAL84120.1| conserved hypothetical protein [Clostridium botulinum A str. ATCC
3502]
gi|152929575|gb|ABS35075.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A
str. ATCC 19397]
gi|152931812|gb|ABS37311.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A
str. Hall]
gi|152936823|gb|ABS42321.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F
str. Langeland]
gi|169122580|gb|ACA46416.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum B1
str. Okra]
gi|169407485|gb|ACA55896.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A3
str. Loch Maree]
gi|182668482|gb|EDT80461.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum
NCTC 2916]
gi|182674156|gb|EDT86117.1| RNAse H-fold protein YqgF [Clostridium botulinum Bf]
gi|226841351|gb|ACO84017.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum A2
str. Kyoto]
gi|229261948|gb|ACQ52981.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum Ba4
str. 657]
gi|295319884|gb|ADG00262.1| conserved hypothetical protein TIGR00250 [Clostridium botulinum F
str. 230613]
Length = 137
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S GF + +T ++ + E +L+ + +I + E D + GLPK+
Sbjct: 4 LGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV + + + DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTLGPQSEKVLEFCDLI---KEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 183 AYAAVILLERYF 194
AA +L+ Y
Sbjct: 121 KVAATYILQGYL 132
>gi|374855655|dbj|BAL58510.1| holliday junction resolvase YqgF [uncultured candidate division OP1
bacterium]
Length = 144
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLP 119
G LG+D G R GLALS PL V + + + +L+ L ++ R + E ++GLP
Sbjct: 2 GRILGIDFGDKRLGLALSDESYTLASPLAVYERKDLQSDLKFLSDLVSRYQITEIVLGLP 61
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DGS P++ +V L V DE T+AEA ++ LS+ R+
Sbjct: 62 VTMDGSLGPKAQQVLEFQKLLEEHVK---IPVSTFDERLTTAEAERVLLQADLSRKKRKA 118
Query: 180 KTDAYAAVILLERYF 194
+ DA AAV++L+ Y
Sbjct: 119 RRDALAAVLILQGYL 133
>gi|295100354|emb|CBK97899.1| conserved hypothetical protein TIGR00250 [Faecalibacterium
prausnitzii L2-6]
Length = 143
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 72/134 (53%), Gaps = 9/134 (6%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLT---VLKLRGEKLELQLLEIAQREETDEFIIGLPK 120
L VD G SRTGLA F P+T +K R +K+ ++ E+A+ E + +IGLP
Sbjct: 4 LAVDYGDSRTGLATCDRTEFLTSPITPQITVKAR-DKVAARVCEVAKEIEAELIVIGLPL 62
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E ++ K R +A + + + G V + DE +T+ A D + G + R++
Sbjct: 63 NMDGTEGERARKSRKLAKTVEIWS---GLPVRMWDERQTTCAAADLLDESGTFGAKRKSI 119
Query: 181 TDAYAAVILLERYF 194
D+ +A ++L+ Y
Sbjct: 120 LDSVSATVILDDYI 133
>gi|387818855|ref|YP_005679202.1| putative Holliday junction resolvase [Clostridium botulinum H04402
065]
gi|322806899|emb|CBZ04469.1| putative Holliday junction resolvase [Clostridium botulinum H04402
065]
Length = 137
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S GF + +T ++ + E +L+ + +I + E D + GLPK+
Sbjct: 4 LGLDIGDRTIGIAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDKYEVDTIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV + + + DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTLGPQSEKVLEFCDLI---KEHLNIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 183 AYAAVILLERYF 194
AA +L+ Y
Sbjct: 121 KVAATYILQGYL 132
>gi|254780976|ref|YP_003065389.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
str. psy62]
gi|254040653|gb|ACT57449.1| Holliday junction resolvase YqgF [Candidatus Liberibacter asiaticus
str. psy62]
Length = 160
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/129 (32%), Positives = 65/129 (50%), Gaps = 7/129 (5%)
Query: 67 GVDLGLSRTGLALS---KGFC-VRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+DLG R GLA+S + F RP V K + + L+LL E FIIGLP +
Sbjct: 21 SIDLGTKRIGLAISDPGRRFAHPRPFLVRK-KVTQTALELLSFITTENIAAFIIGLPLNM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+GSE P+ + R+ + R + + DE T+ A +I+M +S+ R K D
Sbjct: 80 NGSEGPRVHSTRAFVHNMIDRKVYVPFVFW--DERLTTVSAQQILIDMNVSRKKRIQKVD 137
Query: 183 AYAAVILLE 191
+ AA ++L+
Sbjct: 138 SIAAALILQ 146
>gi|260903834|ref|ZP_05912156.1| Holliday junction resolvase-like protein [Brevibacterium linens
BL2]
Length = 150
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 49/147 (33%), Positives = 70/147 (47%), Gaps = 9/147 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKSW 122
+G+D+G R G+A S G PLTV++ E L+ L EI E E +IG PKS
Sbjct: 1 MGLDIGSVRIGVAASDPDGILATPLTVVRRTDEPAALKTLREIIDEYEPIELLIGDPKSL 60
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGS + A R++ A + L+DE T+ EA + G + R+ D
Sbjct: 61 DGSARAAAATALEFAKRISAATA---TPIRLVDERFTTVEAHHALAAAGKNSRQRREIVD 117
Query: 183 AYAAVILLE---RYFSMSGQGTEIVLP 206
A AAVI+L+ Y +GQ +P
Sbjct: 118 AQAAVIILQNALEYEHNTGQPAGRAMP 144
>gi|320101933|ref|YP_004177524.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644]
gi|319749215|gb|ADV60975.1| Holliday junction resolvase YqgF [Isosphaera pallida ATCC 43644]
Length = 183
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 68/139 (48%), Gaps = 10/139 (7%)
Query: 63 GFSLGVDLGLSRTGLALSKG--FCVRPLTVLKLRGEK----LELQLLEIAQREE-TDEFI 115
G L +D GL R GLA+S PL L+ G + E+Q L+ RE D +
Sbjct: 2 GTILALDHGLKRVGLAISDPGRSIASPLGRLERPGGEAGFTTEIQTLKRLVREHGVDRLV 61
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
+GLP G ++PQ+ R R+A E G + +DE ++ A + M GLS +
Sbjct: 62 MGLPVHTSGRDSPQARAARQWGDRVA---KELGLTIIYVDERYSTKHADELMREAGLSAA 118
Query: 176 ARQTKTDAYAAVILLERYF 194
R+ + D+ AAV++L Y
Sbjct: 119 KRKRRVDSLAAVVILRDYL 137
>gi|160945990|ref|ZP_02093216.1| hypothetical protein FAEPRAM212_03523 [Faecalibacterium prausnitzii
M21/2]
gi|158443721|gb|EDP20726.1| RNAse H domain protein, YqgF family [Faecalibacterium prausnitzii
M21/2]
Length = 143
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 66 LGVDLGLSRTGLALSK-----GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPK 120
L VD G SRTGLA + P LK R K+ ++ E+A+ E + +IGLP
Sbjct: 4 LAVDYGDSRTGLATCDRTEFLTTAITPQITLKARN-KVAARVCEVAKEIEAEMILIGLPL 62
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E ++ K R +A + + + G V + DE +T+ A D + G S R+
Sbjct: 63 NMDGTEGERAAKSRKLAKTVELWS---GLPVRMWDERQTTCAAADLLDESGTYGSRRKEI 119
Query: 181 TDAYAAVILLERYFS 195
D+ +A ++LE Y +
Sbjct: 120 LDSVSATVILEDYLA 134
>gi|295103244|emb|CBL00788.1| conserved hypothetical protein TIGR00250 [Faecalibacterium
prausnitzii SL3/3]
Length = 143
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 69/135 (51%), Gaps = 9/135 (6%)
Query: 66 LGVDLGLSRTGLALSK-----GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPK 120
L VD G SRTGLA + P LK R K+ ++ E+A+ E + +IGLP
Sbjct: 4 LAVDYGDSRTGLATCDRTEFLTTAITPQITLKARN-KVAARVCEVAKEIEAEMILIGLPL 62
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E ++ K R +A + + + G V + DE +T+ A D + G S R+
Sbjct: 63 NMDGTEGERAAKSRKLAKTVELWS---GLPVRMWDERQTTCAAADLLDESGTYGSRRKEI 119
Query: 181 TDAYAAVILLERYFS 195
D+ +A ++LE Y +
Sbjct: 120 LDSVSATVILEDYLA 134
>gi|171910330|ref|ZP_02925800.1| hypothetical protein VspiD_04140 [Verrucomicrobium spinosum DSM
4136]
Length = 151
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 70/151 (46%), Gaps = 5/151 (3%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+LG+D G R GLALS G PL L +E ++ EI +++ ++GLP
Sbjct: 3 TLGIDHGTVRIGLALSDELGLAAHPLKTLDT-SPSVEQEIAEIVRQKRVTTVVLGLPLRM 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-T 181
DG + +V + A RL+ +A V +DE TS A + G K+ Q K
Sbjct: 62 DGHRGEAATRVEAFADRLS-KALRHEVTVKFVDERLTSVAAERSLGLEGKQKTKEQKKLV 120
Query: 182 DAYAAVILLERYFSMSGQGTEIVLPKRVDLQ 212
D AAV +L+ Y + G +LP D +
Sbjct: 121 DQVAAVAILQDYLNTQAGGDAWLLPDEPDFR 151
>gi|384135851|ref|YP_005518565.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
gi|339289936|gb|AEJ44046.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
subsp. acidocaldarius Tc-4-1]
Length = 144
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/144 (29%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+ +D G R G+ALS G +P V++ + ++ ++ E+A+REE ++G P
Sbjct: 1 MAIDFGERRIGVALSDPMGLIAQPYGVIERQSDRQAADEVAELARREEVGRIVVGRPLHM 60
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G + +++ A LA R G V+L DE T+ A +I + + R+ D
Sbjct: 61 SGQPSEMTSRAEKFARMLAART---GLPVHLYDERLTTVSAERFLIEQNVRRRERRATVD 117
Query: 183 AYAAVILLERYF----SMSGQGTE 202
A AA +LLE Y G+G E
Sbjct: 118 AAAAQVLLEDYLRSRQRADGEGAE 141
>gi|395236303|ref|ZP_10414500.1| Holliday junction resolvase-like protein [Enterobacter sp. Ag1]
gi|394728934|gb|EJF28954.1| Holliday junction resolvase-like protein [Enterobacter sp. Ag1]
Length = 139
Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 68/131 (51%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSWD 123
S+GV +G TG A RPLT LK + + +E I + + +E ++GLP + D
Sbjct: 15 SIGVAIGQRITGTA-------RPLTALKAQDGTPDWNAVEKILKEWQPEEVVVGLPLNMD 67
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E P + + R A RL R G +V L DE ++ EA + G ++ + D+
Sbjct: 68 GTEQPLTARARKFANRLHGRF---GVKVSLQDERLSTVEARAGLFEHGGFRALNKGSIDS 124
Query: 184 YAAVILLERYF 194
+AVI+LE +F
Sbjct: 125 ASAVIILESWF 135
>gi|397164050|ref|ZP_10487508.1| putative Holliday junction resolvase [Enterobacter radicincitans
DSM 16656]
gi|396094605|gb|EJI92157.1| putative Holliday junction resolvase [Enterobacter radicincitans
DSM 16656]
Length = 138
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPLT LK + + +L+E +E + + I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRITGTARPLTALKAQDGTPDWKLIEKLLKEWQPETVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A ++ R G +V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARNFANKVHGRF---GVKVTLHDERLSTVEARAGLFERGGFRALDKG 119
Query: 180 KTDAYAAVILLERYF 194
D+ +AVI+LE YF
Sbjct: 120 SVDSASAVIILESYF 134
>gi|344343733|ref|ZP_08774600.1| Holliday junction resolvase [Marichromatium purpuratum 984]
gi|343804717|gb|EGV22616.1| Holliday junction resolvase [Marichromatium purpuratum 984]
Length = 148
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 48/142 (33%), Positives = 71/142 (50%), Gaps = 9/142 (6%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
LG D G + G+A+ + PLT L+ R EK + +E RE + + ++GLP +
Sbjct: 5 LGFDFGTRKIGIAVGQTVTRSATPLTTLRNRQEKPDWPRIESLIREWQPEALVVGLPFNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG--LSKSARQTK 180
D +E S +V A +L R G V+L+DE TS EA R+I G +KS
Sbjct: 65 DDTEVDWSGRVHRFARQLNGRF---GLEVHLIDERLTSLEA-QRLIAEGPATAKSTTPDA 120
Query: 181 TDAYAAVILLERYFSMSGQGTE 202
DA+AA ++LE + Q E
Sbjct: 121 VDAFAAALILETWLCEQHQHLE 142
>gi|210633872|ref|ZP_03297887.1| hypothetical protein COLSTE_01804 [Collinsella stercoris DSM 13279]
gi|210159041|gb|EEA90012.1| RNAse H domain protein, YqgF family [Collinsella stercoris DSM
13279]
Length = 142
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 6/134 (4%)
Query: 64 FSLGVDLGLSRTGLALS--KGFCVRPLTVL-KLRGEKLELQLLEIAQREETDEFIIGLPK 120
+L +D+G +RTG+A+S G P+ VL E + + + E D + GLP+
Sbjct: 2 IALALDIGGARTGIAVSDRTGRVASPVKVLPAAEVEGVARTFRMVLEDYEPDVIVCGLPQ 61
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ G E PQ+ +VR VAGR++ R G V +DE +S EA + GLS+ + K
Sbjct: 62 TMAGEEGPQAARVREVAGRIS-RVT--GLPVEFIDERLSSTEAKRILREQGLSEKQMRGK 118
Query: 181 TDAYAAVILLERYF 194
D +A + L+ +
Sbjct: 119 VDMISASLFLQAWL 132
>gi|310658791|ref|YP_003936512.1| putative Holliday junction resolvase [[Clostridium] sticklandii]
gi|308825569|emb|CBH21607.1| putative Holliday junction resolvase [[Clostridium] sticklandii]
Length = 139
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 69/132 (52%), Gaps = 4/132 (3%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
LG+D+G R G+A+S G +PL L + K + ++ EI Q+E+ + ++GLPK+
Sbjct: 5 LGLDIGDKRIGIAVSDLLGMMAQPLYTLTRKSTKEAINEIAEIIQKEDIKQVVVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE Q+ + R + +L + + DE TS A + +M L+K+ + D
Sbjct: 65 DSSEGIQAKRTRDFS-QLLLEKTNSNIEIIYCDERLTSKMARQSLSHMKLAKAKEKKLID 123
Query: 183 AYAAVILLERYF 194
AAV +L+ Y
Sbjct: 124 TAAAVHILQGYL 135
>gi|345300761|ref|YP_004830119.1| Holliday junction resolvase [Enterobacter asburiae LF7a]
gi|345094698|gb|AEN66334.1| Holliday junction resolvase [Enterobacter asburiae LF7a]
Length = 138
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+GV +G TG A RPLT LK + L+E +E + D+ I+GLP + D
Sbjct: 14 SIGVAVGQRITGTA-------RPLTALKANDGTPDWTLIERLLKEWQPDDVIVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E P + + R A ++ R G V L DE ++ EA + G ++ + D+
Sbjct: 67 GTEQPLTARARKFANKIHGRF---GVSVKLHDERLSTVEARAGLFEHGGFRALNKGSVDS 123
Query: 184 YAAVILLERYF 194
+AV++LE YF
Sbjct: 124 ASAVVILESYF 134
>gi|295396123|ref|ZP_06806306.1| possible crossover junction endodeoxyribonuclease [Brevibacterium
mcbrellneri ATCC 49030]
gi|294971064|gb|EFG46956.1| possible crossover junction endodeoxyribonuclease [Brevibacterium
mcbrellneri ATCC 49030]
Length = 147
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/136 (32%), Positives = 68/136 (50%), Gaps = 7/136 (5%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQ-LLEIAQREETDEFI 115
R G LG+D+G R G+A S G PL V+ RG + + L+ + EI + + E +
Sbjct: 1 MRRGRRLGIDVGAVRVGIAHSDPDGILASPLEVVNRRGGDNIALRRIQEIVEEVDPVELV 60
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
IG P S DG ++K R A ++ R G V +DE T+ +A + G +
Sbjct: 61 IGDPTSLDGKARQSADKARRFAQKIVDRT---GLPVRYVDERFTTTQAHLMLQEAGKTSK 117
Query: 176 ARQTKTDAYAAVILLE 191
R+ DA AAV++L+
Sbjct: 118 QRRETVDAQAAVVILQ 133
>gi|312143794|ref|YP_003995240.1| Holliday junction resolvase YqgF [Halanaerobium hydrogeniformans]
gi|311904445|gb|ADQ14886.1| Holliday junction resolvase YqgF [Halanaerobium hydrogeniformans]
Length = 136
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 74/136 (54%), Gaps = 6/136 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSW 122
LG+D G R G+A+S G+ +PLT LK G ++L ++L + ++ + ++ I+G+P +
Sbjct: 4 LGIDYGNKRVGIAVSDALGWTAQPLTTLKQHGHQELLVELRQYIEKYDVEKIIVGMPYNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGS ++ ++ L V + DE T+++A + ++ LS+S R+ D
Sbjct: 64 DGSRGKRAEITQAFINFLKNNLE---IPVEIQDERLTTSQAENILLEADLSRSRRKDVID 120
Query: 183 AYAAVILLERYFSMSG 198
AA ++L+ Y ++
Sbjct: 121 KLAAALILQSYLDLNN 136
>gi|304396757|ref|ZP_07378637.1| Holliday junction resolvase YqgF [Pantoea sp. aB]
gi|372275231|ref|ZP_09511267.1| Holliday junction resolvase [Pantoea sp. SL1_M5]
gi|390435320|ref|ZP_10223858.1| Holliday junction resolvase-like protein [Pantoea agglomerans IG1]
gi|440759968|ref|ZP_20939086.1| Putative Holliday junction resolvase [Pantoea agglomerans 299R]
gi|304355553|gb|EFM19920.1| Holliday junction resolvase YqgF [Pantoea sp. aB]
gi|436426306|gb|ELP24025.1| Putative Holliday junction resolvase [Pantoea agglomerans 299R]
Length = 139
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLPKSW 122
LG D G G+A+ + RPLT LK + + ++E +E +F++ GLP +
Sbjct: 7 LGFDFGTKSIGVAVGQQLTGSARPLTALKAQDGIPDWLVIEKLLKEWQPDFVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P +++ R A RL R G RV L DE ++ EA + G ++ + D
Sbjct: 67 DGTEQPLTDRARKFANRLHGRF---GIRVELQDERLSTVEARAGLFERGGYRALNKGSVD 123
Query: 183 AYAAVILLERYF 194
+ +A I+L+ +F
Sbjct: 124 SQSAAIILQDWF 135
>gi|329998587|ref|ZP_08303171.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3]
gi|328538606|gb|EGF64706.1| RNAse H domain protein, YqgF family [Klebsiella sp. MS 92-3]
Length = 138
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 69/138 (50%), Gaps = 6/138 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G LG D G G+A + RPL LK + K + ++E +E + + I+GLP
Sbjct: 3 GTFLGFDFGTKSIGVAGGQRITATARPLPALKAQDGKPDWNVIEKLLKEWQPEAVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R+ A ++ R G + L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARNFANKIHGRF---GVAILLHDERLSTVEARAGLFEHGGYRALNKG 119
Query: 180 KTDAYAAVILLERYFSMS 197
D+ +AV++LE YF S
Sbjct: 120 SVDSASAVVILESYFEQS 137
>gi|424835606|ref|ZP_18260269.1| Holliday junction resolvase-like protein [Clostridium sporogenes PA
3679]
gi|365977989|gb|EHN14085.1| Holliday junction resolvase-like protein [Clostridium sporogenes PA
3679]
Length = 137
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S GF + +T ++ + E +L+ + +I E D + GLPK+
Sbjct: 4 LGLDIGDRTIGVAISDPLGFTAQGITTIRRKSEAYDLEEIKKICDEYEVDTIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV + + + DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTLGPQSEKVLEFCDLIKEHV---NIEIKMWDERLTTVAATRAMLEADLSRSKRKKIVD 120
Query: 183 AYAAVILLERYF 194
AA +L+ Y
Sbjct: 121 KIAATYILQGYL 132
>gi|336179181|ref|YP_004584556.1| Holliday junction resolvase [Frankia symbiont of Datisca glomerata]
gi|334860161|gb|AEH10635.1| Holliday junction resolvase [Frankia symbiont of Datisca glomerata]
Length = 164
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 65/141 (46%), Gaps = 8/141 (5%)
Query: 61 RGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIA---QREETDEFI 115
R G +G+D+G R G+A S P+T L+ RG +L L EIA + E +
Sbjct: 4 RTGVHVGIDVGTVRIGVAASDPDARIAFPVTTLR-RGTRLNSDLDEIAMIVRDRHAVEVV 62
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
+GLP G P + K R A LA R A V L+DE T+ A RM GL
Sbjct: 63 VGLPTRLSGLPGPAARKAREYADLLAARVAP--VPVRLVDERLTTVVAHRRMAERGLRAR 120
Query: 176 ARQTKTDAYAAVILLERYFSM 196
R+ D AAV +L+ +
Sbjct: 121 DRRAVVDQEAAVQILQSALDI 141
>gi|332981265|ref|YP_004462706.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON]
gi|332698943|gb|AEE95884.1| Holliday junction resolvase YqgF [Mahella australiensis 50-1 BON]
Length = 144
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 71/132 (53%), Gaps = 4/132 (3%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G + G+A+S G+ + L + + + ++Q +++I Q+ +IGLPK+
Sbjct: 4 LGLDVGDNTIGIAISDELGWTAQGLETWRRKQPEADMQHIVDICQKSGVQCIVIGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+GS PQ KV + RLA A+ + L DE ++ A +I +S++ R+ D
Sbjct: 64 NGSIGPQGKKVIAFKQRLADYMAD-DIDIVLWDERLSTVAAQRSLIEADVSRAKRKKVID 122
Query: 183 AYAAVILLERYF 194
AAV +L+ Y
Sbjct: 123 KMAAVYILQGYL 134
>gi|336310599|ref|ZP_08565571.1| putative Holliday junction resolvase [Shewanella sp. HN-41]
gi|335866329|gb|EGM71320.1| putative Holliday junction resolvase [Shewanella sp. HN-41]
Length = 135
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLK-LRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+G D G G+A+ + PL LK + G Q+ E+ + + D ++GLP +
Sbjct: 1 MGFDFGTKSIGVAIGQEITSSATPLLSLKAIDGIPNWDQIGELIKEWQPDLVVVGLPLNM 60
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E +++ R A R+ A+ G ++ DE T+ +A R+ +G K+ + + D
Sbjct: 61 DGTEQEMTHRARKFANRIN---AKFGIKIVTQDERLTTTDAKARLFELGGFKALTKGQVD 117
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 118 AVSAVLIIESYF 129
>gi|258405254|ref|YP_003197996.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM
5692]
gi|257797481|gb|ACV68418.1| Holliday junction resolvase YqgF [Desulfohalobium retbaense DSM
5692]
Length = 142
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG+D GL R GLALS + V PL TV + + L +LL + + +IGLP
Sbjct: 4 LGIDFGLKRVGLALSDSQATVVTPLATVQRSTRQALFEELLAYIETYAIEAVVIGLPYDL 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ T + + R+ LA R A +Y +DE TS A + + G+ + R+ D
Sbjct: 64 EGTATLTTRQARNFGTSLARRIA---LPIYYVDEVLTSEFAGEALREAGVPRHKRKDLLD 120
Query: 183 AYAAVILLERYFS 195
+AAV +LE + +
Sbjct: 121 QHAAVAILESFLA 133
>gi|401675226|ref|ZP_10807220.1| putative holliday junction resolvase [Enterobacter sp. SST3]
gi|400217683|gb|EJO48575.1| putative holliday junction resolvase [Enterobacter sp. SST3]
Length = 138
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL LK + L+E +E + D+ I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLAALKANDGTPDWNLIERLLKEWQPDDVIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A ++ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANKIHGRF---GVSVKLHDERLSTVEARAGLFEHGGFRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
D+ +AVI+LE YF
Sbjct: 120 SVDSASAVIILESYF 134
>gi|127512076|ref|YP_001093273.1| Holliday junction resolvase-like protein [Shewanella loihica PV-4]
gi|126637371|gb|ABO23014.1| Holliday junction resolvase YqgF [Shewanella loihica PV-4]
Length = 139
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 14/136 (10%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKL-----RGEKLELQLLEIAQREETDEFIIGL 118
LG D G G+A+ + PL LK R E++E + Q + D ++GL
Sbjct: 7 LGFDFGTKSIGVAIGQQITGSATPLASLKANDGIPRWEEIE----ALIQEWKPDLIVVGL 62
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P + DG+E + + R A R++ R G + DE T+A+A R+ MG K+ +
Sbjct: 63 PLNMDGTEQEMTQRARKFANRISGRF---GVKTATQDERLTTADAKARLFEMGGYKALSK 119
Query: 179 TKTDAYAAVILLERYF 194
+ D+ +AV+++E YF
Sbjct: 120 GQVDSMSAVLIIESYF 135
>gi|312195531|ref|YP_004015592.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c]
gi|311226867|gb|ADP79722.1| Holliday junction resolvase YqgF [Frankia sp. EuI1c]
Length = 197
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/138 (32%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLE----LQLLEIAQREETDEFIIGL 118
G LGVD+G R G+++S V L + LR + + QL E+ ++GL
Sbjct: 45 GVWLGVDVGTVRIGVSVSDPDGVLALPIGTLRRDVSDNSDLAQLAELVHERRAVAVVVGL 104
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P + G E + ++R A L+ R A V L+DE T+A A RM GLS AR+
Sbjct: 105 PMTLSGEEGLAAQRIRQYAQSLSARVAP--IPVRLVDERLTTAAAHRRMAERGLSSRARR 162
Query: 179 TKTDAYAAVILLERYFSM 196
D AAV +L+ +
Sbjct: 163 GLVDQEAAVQILQHALDV 180
>gi|291618771|ref|YP_003521513.1| hypothetical protein PANA_3218 [Pantoea ananatis LMG 20103]
gi|378765824|ref|YP_005194285.1| Holliday junction resolvase YqgF [Pantoea ananatis LMG 5342]
gi|386017024|ref|YP_005935322.1| putative Holliday junction resolvase YqgF [Pantoea ananatis
AJ13355]
gi|386078091|ref|YP_005991616.1| Holliday junction resolvase YqgF [Pantoea ananatis PA13]
gi|291153801|gb|ADD78385.1| YqgF [Pantoea ananatis LMG 20103]
gi|327395104|dbj|BAK12526.1| putative Holliday junction resolvase YqgF [Pantoea ananatis
AJ13355]
gi|354987271|gb|AER31395.1| Holliday junction resolvase YqgF [Pantoea ananatis PA13]
gi|365185298|emb|CCF08248.1| Holliday junction resolvase YqgF [Pantoea ananatis LMG 5342]
Length = 138
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + RPL+ +K + G LQ+ ++ + + D ++GLP +
Sbjct: 7 LGFDFGTKSIGVAVGQQLTGSARPLSAIKAQDGTPDWLQIEKLLKEWQPDFVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P + + R A RL R G RV L DE ++ EA + G ++ + D
Sbjct: 67 DGTEQPLTARARKFANRLHGRF---GIRVELQDERLSTVEARAGLFERGGYRALNKGSVD 123
Query: 183 AYAAVILLERYF 194
+ +A I+L+ +F
Sbjct: 124 SQSAAIILQDWF 135
>gi|271967371|ref|YP_003341567.1| endonuclease involved in recombination-like protein
[Streptosporangium roseum DSM 43021]
gi|270510546|gb|ACZ88824.1| endonuclease involved in recombination-like protein
[Streptosporangium roseum DSM 43021]
Length = 163
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 59 LWRGGFSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFII 116
+ R G LGVD+G R G+A S G P+ ++ RG +L EIA E E ++
Sbjct: 2 MMRNGIRLGVDVGSVRIGVARSDPSGLLATPVETVR-RGRGDLDRLAEIAAEYEVVEIVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP S G E + R A R+++R A V L DE T+ A + G+
Sbjct: 61 GLPTSLSGREGQAAEAARDFATRISLRLAP--IPVRLFDERLTTVTAQQGLRASGVKAKN 118
Query: 177 RQTKTDAYAAVILLE 191
++ D AA++LL+
Sbjct: 119 QRAVVDQAAAIVLLQ 133
>gi|432408001|ref|ZP_19650705.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE28]
gi|430928002|gb|ELC48553.1| YqgF family RNAse H domain-containing protein [Escherichia coli
KTE28]
Length = 138
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + R L +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARLLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|157148498|ref|YP_001455817.1| Holliday junction resolvase-like protein [Citrobacter koseri ATCC
BAA-895]
gi|167012710|sp|A8APG8.1|RUVX_CITK8 RecName: Full=Putative Holliday junction resolvase
gi|157085703|gb|ABV15381.1| hypothetical protein CKO_04324 [Citrobacter koseri ATCC BAA-895]
Length = 138
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + R L +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRITGTARALPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVLVTLHDERLSTIEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>gi|85060002|ref|YP_455704.1| Holliday junction resolvase-like protein [Sodalis glossinidius str.
'morsitans']
gi|146325608|sp|Q2NRC6.1|RUVX_SODGM RecName: Full=Putative Holliday junction resolvase
gi|84780522|dbj|BAE75299.1| conserved hypothetical protein [Sodalis glossinidius str.
'morsitans']
Length = 141
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDE-FIIGLP 119
G + D G G+A+ + RPLT K R + Q +E +E E ++GLP
Sbjct: 5 GSIMAFDFGTRSIGVAIGQRVTCTARPLTAFKARDGVPDWQQIEKLLKEWRPETVVVGLP 64
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DGSE P + +VR A R+ R G +V L DE ++ EA + G ++ +
Sbjct: 65 LNMDGSEQPLTARVRKFANRMHGRF---GVQVVLHDERLSTVEARAGLFERGGYRALEKG 121
Query: 180 KTDAYAAVILLERYF 194
K DA +AVI+LE +
Sbjct: 122 KVDAGSAVIILESWL 136
>gi|390444177|ref|ZP_10231959.1| Holliday junction resolvase [Nitritalea halalkaliphila LW7]
gi|389665186|gb|EIM76661.1| Holliday junction resolvase [Nitritalea halalkaliphila LW7]
Length = 137
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/141 (31%), Positives = 70/141 (49%), Gaps = 15/141 (10%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPK 120
G L +DLG RTGLA++ PL ++ +L + L + RE + FI+GLP+
Sbjct: 2 GRLLAIDLGTKRTGLAVTDPLKLIANPLEMVP--THQLLVYLEQYVAREPVEAFILGLPR 59
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVY---LLDEHRTSAEAVDRMINMGLSKSAR 177
+ G + +V + G L E+ + V L+DE TS A+ M+ MG K R
Sbjct: 60 NLQGEANEMTPRVLQLKGTL-----EKKFPVIPVKLVDERFTSKMAMQSMLAMGSKKRDR 114
Query: 178 QTKT---DAYAAVILLERYFS 195
+ KT D +A I+L+ Y +
Sbjct: 115 KEKTGNLDKISATIILQSYLA 135
>gi|288918209|ref|ZP_06412564.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f]
gi|288350379|gb|EFC84601.1| Holliday junction resolvase YqgF [Frankia sp. EUN1f]
Length = 200
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKL----RGEKLELQLLEIAQREETDEFII 116
G +GVD+G R G+A S G P+T L+ R K +L +I + E ++
Sbjct: 41 GVRIGVDVGSVRVGVAASDPDGLLAVPVTTLRRDASGRRHKDVDELADIVRDRHAVEVVV 100
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+ G E + R A L+ R A V L+DE T+ A RM GL A
Sbjct: 101 GLPRQLSGEEGEAVRRARQYAEVLSTRVAP--VPVRLVDERLTTVVAHRRMAERGLRSRA 158
Query: 177 RQTKTDAYAAVILLERYFSM 196
R+ D AAV +L+ + +
Sbjct: 159 RRELVDQEAAVQILQHHLDI 178
>gi|374993669|ref|YP_004969168.1| RNAse H-fold protein YqgF [Desulfosporosinus orientis DSM 765]
gi|357212035|gb|AET66653.1| RNAse H-fold protein YqgF [Desulfosporosinus orientis DSM 765]
Length = 139
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 65/137 (47%), Gaps = 4/137 (2%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSWDG 124
+G+D G G+A+S V +R K ELQ L E+ + E E ++G PK+ +G
Sbjct: 4 MGLDFGTKTIGVAMSDELFWTAQGVKTIRRSKNELQELRELIKEYEVREIVVGYPKNMNG 63
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
++ P+ A + AE G V L DE ++ A +I +S++ R+ D
Sbjct: 64 TKGPRCEATEEFA---EILRAEFGLEVILWDERLSTVAAQRSLIEADMSRAKRKNVIDKM 120
Query: 185 AAVILLERYFSMSGQGT 201
AAV +L+ Y + T
Sbjct: 121 AAVFILQGYLDSKSKNT 137
>gi|336247129|ref|YP_004590839.1| Holliday junction resolvase-like protein [Enterobacter aerogenes
KCTC 2190]
gi|444354752|ref|YP_007390896.1| Putative Holliday junction resolvase (EC 3.1.-.-) [Enterobacter
aerogenes EA1509E]
gi|334733185|gb|AEG95560.1| Holliday junction resolvase-like protein [Enterobacter aerogenes
KCTC 2190]
gi|443905582|emb|CCG33356.1| Putative Holliday junction resolvase (EC 3.1.-.-) [Enterobacter
aerogenes EA1509E]
Length = 138
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+GV +G TG A RPL LK + K + ++E +E + + I+GLP + D
Sbjct: 14 SIGVAVGQRITGTA-------RPLPALKAQDGKPDWNIIEKLLKEWQPEAVIVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E P + + R+ A ++ R G ++ L DE ++ EA + G ++ + D+
Sbjct: 67 GTEQPLTARARNFANKIHGRF---GVKITLHDERLSTVEARAGLFEHGGFRALNKGSVDS 123
Query: 184 YAAVILLERYF 194
+AV++LE YF
Sbjct: 124 ASAVVILESYF 134
>gi|146293776|ref|YP_001184200.1| Holliday junction resolvase-like protein [Shewanella putrefaciens
CN-32]
gi|145565466|gb|ABP76401.1| Holliday junction resolvase YqgF [Shewanella putrefaciens CN-32]
Length = 141
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLR---GEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + +L L+ G Q+ ++ + + D ++GLP +
Sbjct: 7 LGFDFGTKSIGVAIGQEITASATPLLSLKAVDGIPNWDQIGDLIKEWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E +++ R A R+ A+ G ++ DE T+ +A R+ +G K+ + + D
Sbjct: 67 DGTEQDMTHRARKFANRIN---AKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQVD 123
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 124 AVSAVLIIESYF 135
>gi|383816968|ref|ZP_09972354.1| Holliday junction resolvase-like protein [Serratia sp. M24T3]
gi|383294164|gb|EIC82512.1| Holliday junction resolvase-like protein [Serratia sp. M24T3]
Length = 144
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
D G GLA+ + RPLT K + + Q +E +E + D I+GLP +
Sbjct: 7 FAFDFGTKSIGLAIGQEVTGTARPLTSFKAQDGTPDWQKIEKLLKEWQPDLVIVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P + + R A RL R G +V L DE ++ EA + G ++ + D
Sbjct: 67 DGTEQPLTARARKFANRLHGRF---GVQVELHDERLSTVEARADLFERGGFRALDKGSVD 123
Query: 183 AYAAVILLERYF 194
A +AVI+LE +F
Sbjct: 124 AASAVIILESWF 135
>gi|120598152|ref|YP_962726.1| Holliday junction resolvase-like protein [Shewanella sp. W3-18-1]
gi|386314523|ref|YP_006010688.1| Holliday junction resolvase YqgF [Shewanella putrefaciens 200]
gi|120558245|gb|ABM24172.1| Holliday junction resolvase YqgF [Shewanella sp. W3-18-1]
gi|319427148|gb|ADV55222.1| Holliday junction resolvase YqgF [Shewanella putrefaciens 200]
Length = 141
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLR---GEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + +L L+ G Q+ ++ + + D ++GLP +
Sbjct: 7 LGFDFGTKSIGVAIGQEITASATPLLSLKAVDGIPNWDQIGDLIKEWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E +++ R A R+ A+ G ++ DE T+ +A R+ +G K+ + + D
Sbjct: 67 DGTEQDMTHRARKFANRIN---AKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQVD 123
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 124 AVSAVLIIESYF 135
>gi|383317535|ref|YP_005378377.1| RNAse H-fold protein YqgF [Frateuria aurantia DSM 6220]
gi|379044639|gb|AFC86695.1| RNAse H-fold protein YqgF [Frateuria aurantia DSM 6220]
Length = 151
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 50/150 (33%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQREE-TDEFIIGLPKSW 122
G D+G R+G+A+ F R L VL + + E L+ +RE D ++GLP +
Sbjct: 5 FGFDVGSRRSGVAIGNTFTGTARNLAVLGMDQGQPEWARLDALRREWLPDTLVVGLPLTL 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINM---GLSKSAR 177
DG E P S + R A L R +R VYL+DE +S EA R GL +
Sbjct: 65 DGEEQPASKRARRFAEALQQR-----YRLPVYLVDERHSSQEAAQRFAQARASGLRRRNH 119
Query: 178 QTKTDAYAAVILLERYFSMSGQGTEIVLPK 207
+ DA AA ++LER+ ++G + LP+
Sbjct: 120 AEQLDADAAAVILERWL-LAGPEDRLALPE 148
>gi|398794315|ref|ZP_10554421.1| RNAse H-fold protein YqgF [Pantoea sp. YR343]
gi|398208850|gb|EJM95550.1| RNAse H-fold protein YqgF [Pantoea sp. YR343]
Length = 138
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
LG D G G+A+ + R LT LK + + +L+E +E + D ++GLP +
Sbjct: 7 LGFDFGTKSIGVAVGQQLTGTARALTALKAQDGTPDWKLIEKLLKEWQPDYVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + R A RL R G RV L DE ++ EA + G ++ ++ + D
Sbjct: 67 DGTEQELTTRARKFANRLHGRF---GVRVELQDERLSTVEARADLFERGGFRALQKGQVD 123
Query: 183 AYAAVILLERYF 194
+ +AVI+LE +F
Sbjct: 124 SQSAVIILEDWF 135
>gi|311278135|ref|YP_003940366.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1]
gi|308747330|gb|ADO47082.1| Holliday junction resolvase YqgF [Enterobacter cloacae SCF1]
Length = 138
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSWD 123
S+GV +G TG A RPL+ LK + + +E I + D I+GLP + D
Sbjct: 14 SIGVAVGQRITGTA-------RPLSALKAQDGTPDWNAVEKILTEWQPDAVIVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E P + + R A +L R G ++ L DE ++ EA + G ++ + + D+
Sbjct: 67 GTEQPLTARARKFANKLHGRF---GVKIELHDERLSTVEARAGLFEHGGYRALNKGRVDS 123
Query: 184 YAAVILLERYF 194
+AVI+LE YF
Sbjct: 124 ASAVIILESYF 134
>gi|389796108|ref|ZP_10199164.1| Holliday junction resolvase-like protein [Rhodanobacter sp. 116-2]
gi|388448748|gb|EIM04728.1| Holliday junction resolvase-like protein [Rhodanobacter sp. 116-2]
Length = 146
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
G D+G TG+A+ + R L L +R + + L+ + Q+ + D ++GLP +
Sbjct: 2 FGFDVGSRITGVAIGNTYTASARALATLAVRDDNPDWPRLDTLRQQWQPDTLVVGLPLTL 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAE---AVDRMINMGLSKSARQT 179
DG+E P S + R A +L R G V L+DE +S E +GL + T
Sbjct: 62 DGAEQPASRRARQFAVQLQQR---YGLPVVLVDERHSSQEAAQRFAAARAVGLKRRRDAT 118
Query: 180 KTDAYAAVILLERYFS 195
DA AA ++LER+ +
Sbjct: 119 DIDAEAAAVILERWLA 134
>gi|410463932|ref|ZP_11317413.1| RNAse H-fold protein YqgF [Desulfovibrio magneticus str. Maddingley
MBC34]
gi|409982958|gb|EKO39366.1| RNAse H-fold protein YqgF [Desulfovibrio magneticus str. Maddingley
MBC34]
Length = 147
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSW 122
L +D G +R GLA+ G V P + + + L +LL + + + +IG P
Sbjct: 5 LAIDYGQARVGLAVCAPGGEVVFPHSTIAWETRDDLFARLLAVIEEQNPGRIVIGYPARA 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G E +VR+ A RLA R A + DE ++ EA +R+ GLS K D
Sbjct: 65 GGDEGLTGRQVRNFAARLARRTA---VPLAYADEAHSTEEAAERLREAGLSGRELLAKVD 121
Query: 183 AYAAVILLERYF 194
A AA ++LERY
Sbjct: 122 AMAAAVILERYL 133
>gi|15894957|ref|NP_348306.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum ATCC 824]
gi|32130056|sp|Q97IG1.1|RUVX_CLOAB RecName: Full=Putative Holliday junction resolvase
gi|15024643|gb|AAK79646.1|AE007678_2 Predicted endonuclease involved in recombination [Clostridium
acetobutylicum ATCC 824]
Length = 135
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
LG+D+G G+ALS GF + +T ++ + E+ ++ +L E+ ++ E D + GLPK+
Sbjct: 4 LGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ QS K V G V + + DE T+ A M+ LS+ R+ D
Sbjct: 64 NGTIGFQSEK---VLGFCEVIKQNINVPIKMWDERLTTVTANRAMLEADLSRKKRKKLVD 120
Query: 183 AYAAVILLERYFS 195
AA +L+ Y +
Sbjct: 121 KVAATYILQGYLN 133
>gi|365133285|ref|ZP_09342669.1| RNAse H-fold protein YqgF [Subdoligranulum sp. 4_3_54A2FAA]
gi|363616095|gb|EHL67549.1| RNAse H-fold protein YqgF [Subdoligranulum sp. 4_3_54A2FAA]
Length = 141
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSW 122
+ VD G +RTGLA+ F P+ +++ + K+ +++ ++ E +IGLPK+
Sbjct: 4 MAVDYGDARTGLAVCDRTEFLASPIGIIEEKSLAKVAEKIVYASREYEVGMIVIGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE P++ K +A L A V L DE +T+ A + + G R+ D
Sbjct: 64 DGSEGPRAQKSHKLADTL---RAIVPIPVELWDERQTTVSAANILSENGTYGKKRKDVLD 120
Query: 183 AYAAVILLERYFS 195
A AA ++LE Y +
Sbjct: 121 AVAATVILESYMA 133
>gi|87198928|ref|YP_496185.1| Holliday junction resolvase-like protein [Novosphingobium
aromaticivorans DSM 12444]
gi|146325585|sp|Q2G9X2.1|RUVX_NOVAD RecName: Full=Putative Holliday junction resolvase
gi|87134609|gb|ABD25351.1| Holliday junction resolvase YqgF [Novosphingobium aromaticivorans
DSM 12444]
Length = 155
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 7/139 (5%)
Query: 56 KDSLWRGGFSLGVDLGLSRTGLALSKG---FCVRPLTVLKLRGEKLELQLLEIAQREETD 112
+D+L GG +G+D G G+AL F T+ + + + Q+ I
Sbjct: 10 RDALAEGGSLIGLDTGTKTIGVALCDREWRFATAGTTIRRTKFAADKAQIRAIVAERGVK 69
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGL 172
+IGLP + DGSE+P+S R++A L + G + L DE T+ A MI
Sbjct: 70 GIVIGLPLNMDGSESPRSQGARAMARNL----EDLGLPILLWDERWTTQAAERAMIEQDF 125
Query: 173 SKSARQTKTDAYAAVILLE 191
S++ R + D++AA ++L+
Sbjct: 126 SRAKRAERIDSHAAALILQ 144
>gi|365175183|ref|ZP_09362620.1| RNAse H-fold protein YqgF [Synergistes sp. 3_1_syn1]
gi|363613522|gb|EHL65033.1| RNAse H-fold protein YqgF [Synergistes sp. 3_1_syn1]
Length = 136
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 69/131 (52%), Gaps = 5/131 (3%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+ +D+G R G+A+S GF + + VL +G L L +IA E + +IG+P+ D
Sbjct: 5 IALDIGSVRIGVAVSDPLGFFAQGVAVLDAKGCWLS-DLAKIAGEYEKPKLLIGMPRRTD 63
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
GSE P++ ++R A +V+ + DE T+ A ++ +S++ R+ K D
Sbjct: 64 GSEGPEAVRMRETAK--SVQEYFPDLEIEFWDERFTTTIAQQALLEADVSRAGRKKKVDK 121
Query: 184 YAAVILLERYF 194
AA +LL+ Y
Sbjct: 122 IAATLLLQSYL 132
>gi|218887440|ref|YP_002436761.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str.
'Miyazaki F']
gi|226725512|sp|B8DIJ5.1|RUVX_DESVM RecName: Full=Putative Holliday junction resolvase
gi|218758394|gb|ACL09293.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris str.
'Miyazaki F']
Length = 142
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG+D G RTG+A S G P T++ ++ +LL +A+ E + +++GLP
Sbjct: 4 LGIDYGTKRTGVAASDTGGSMAFPRRTIVMTTRDRFFAELLAVAEEERAEAYVVGLPLLH 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG++T + +VR+ RL R VYL++E +S EA D + + GLS A + D
Sbjct: 64 DGTDTLTTRQVRNFVERLKRRTT---LPVYLMEEFLSSYEAEDDLRDAGLSGRALEAVVD 120
Query: 183 AYAAVILLERYFSM 196
AAV +L+ + ++
Sbjct: 121 QQAAVRILQSFLNL 134
>gi|292900531|ref|YP_003539900.1| holliday junction resolvase [Erwinia amylovora ATCC 49946]
gi|291200379|emb|CBJ47507.1| putative holliday junction resolvase [Erwinia amylovora ATCC 49946]
Length = 140
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RPL LK + + LE +E + D ++GLP
Sbjct: 12 GTKSIGVAIGQQLTGTA-------RPLIALKAQDGIPDWNRLEALLKEWQPDRVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DGSE P + + R A RL R G +V L DE ++ EA + G ++ +
Sbjct: 65 NMDGSEQPLTVRARKFANRLHGRF---GVQVDLHDERLSTVEARAELFERGGFRALSKGN 121
Query: 181 TDAYAAVILLERYF 194
D+ +AVI+LE +F
Sbjct: 122 VDSLSAVIILESWF 135
>gi|309791342|ref|ZP_07685865.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG-6]
gi|308226652|gb|EFO80357.1| Holliday junction resolvase YqgF [Oscillochloris trichoides DG6]
Length = 148
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
LG+D+G R G+ALS G PLT + + ++ RE E ++GLP +
Sbjct: 7 LGLDVGDRRIGVALSDALGMLASPLTTINANPRSQAITMIARLVREHEVQGIVVGLPLTL 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G PQ+ + RS A L + G V L DE T+ A + MG+ R+ + D
Sbjct: 67 RGEIGPQAEQTRSFAQELERQV---GLPVMLFDERYTTTVAEQLLREMGVKPEKRKQQID 123
Query: 183 AYAAVILLERYF 194
AA I+L+ Y
Sbjct: 124 QVAASIILQDYL 135
>gi|347733418|ref|ZP_08866478.1| hypothetical protein DA2_2780 [Desulfovibrio sp. A2]
gi|347517874|gb|EGY25059.1| hypothetical protein DA2_2780 [Desulfovibrio sp. A2]
Length = 142
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 73/134 (54%), Gaps = 6/134 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG+D G RTG+A S G P T++ ++ +LL +A+ E + +++GLP
Sbjct: 4 LGIDYGTRRTGIAASDTGGSMAFPRRTIVMTTRDRFFAELLAVAEEERAEAYVVGLPLLH 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG++T + +VR+ RL R VYL++E +S EA D + + GLS A + D
Sbjct: 64 DGTDTLTTRQVRNFVERLKRRTT---LPVYLMEEFLSSYEAEDDLRDAGLSGRALEAVVD 120
Query: 183 AYAAVILLERYFSM 196
AAV +L+ + ++
Sbjct: 121 QQAAVRILQSFLNL 134
>gi|302847257|ref|XP_002955163.1| hypothetical protein VOLCADRAFT_106688 [Volvox carteri f.
nagariensis]
gi|300259455|gb|EFJ43682.1| hypothetical protein VOLCADRAFT_106688 [Volvox carteri f.
nagariensis]
Length = 215
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 56/177 (31%), Positives = 83/177 (46%), Gaps = 28/177 (15%)
Query: 43 SVEEFLPNATRRKKDSLWRGGFS--------LGVDLGLSRTGLALSK-GFCVRPLTVLKL 93
S + +P+ T K D L G + LGVD G S TGLAL + G+C ++ L
Sbjct: 10 SGQTPVPDTTNPKPDPLTNAGRTTNGPPLHVLGVDYGTSITGLALGRNGWCSPLKSIPSL 69
Query: 94 RGEKLE---LQLLEIAQREETDEFIIGLPKSWDGSET-PQSN-----KVRSVAGRLAVRA 144
R KL Q+L A + + ++G+P GS P ++ + R++A LA+ A
Sbjct: 70 RTSKLSDVARQVLATALEQRVEGMVVGIPVQPGGSIVKPHTDSRLGSRCRNLAHTLALMA 129
Query: 145 AERGWRVYLLDEHRTSAEAVDRMINMG------LSKSARQ-TKTDAYAAVILLERYF 194
E G VYL +E T+ M +G LS +Q K D+ +A +LL YF
Sbjct: 130 KEHGIPVYLYNEKDTTRAT---MKTLGYNWTDRLSGQEKQACKLDSESAAMLLRLYF 183
>gi|167623110|ref|YP_001673404.1| Holliday junction resolvase-like protein [Shewanella halifaxensis
HAW-EB4]
gi|167353132|gb|ABZ75745.1| Holliday junction resolvase YqgF [Shewanella halifaxensis HAW-EB4]
Length = 140
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLK-LRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + RPL +K + G ++ + + D ++GLP +
Sbjct: 7 LGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPKWEEIGALITEWKPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + R A R++ R G +V DE T+A+A R+ MG K+ + + D
Sbjct: 67 DGTEQEMTQRARKFANRISGRF---GVKVATQDERLTTADAKARLFEMGGYKALTKGQVD 123
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 124 AMSAVLIVESYF 135
>gi|292487084|ref|YP_003529954.1| Holliday junction resolvase [Erwinia amylovora CFBP1430]
gi|428784012|ref|ZP_19001505.1| putative Holliday junction resolvase [Erwinia amylovora ACW56400]
gi|291552501|emb|CBA19546.1| putative Holliday junction resolvase [Erwinia amylovora CFBP1430]
gi|312171187|emb|CBX79446.1| putative Holliday junction resolvase [Erwinia amylovora ATCC
BAA-2158]
gi|426277727|gb|EKV55452.1| putative Holliday junction resolvase [Erwinia amylovora ACW56400]
Length = 141
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RPL LK + + LE +E + D ++GLP
Sbjct: 13 GTKSIGVAIGQQLTGTA-------RPLIALKAQDGIPDWNRLEALLKEWQPDRVVVGLPL 65
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DGSE P + + R A RL R G +V L DE ++ EA + G ++ +
Sbjct: 66 NMDGSEQPLTVRARKFANRLHGRF---GVQVDLHDERLSTVEARAELFERGGFRALSKGN 122
Query: 181 TDAYAAVILLERYF 194
D+ +AVI+LE +F
Sbjct: 123 VDSLSAVIILESWF 136
>gi|392375108|ref|YP_003206941.1| Holliday junction resolvase [Candidatus Methylomirabilis oxyfera]
gi|258592801|emb|CBE69110.1| putative Holliday junction resolvase [Candidatus Methylomirabilis
oxyfera]
Length = 144
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 72/134 (53%), Gaps = 10/134 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKSW 122
LG+D G R G+A+S G +PL L+ ++ ++ + EI + + ++GLPK+
Sbjct: 5 LGIDFGTKRIGVAISDELGLTAQPLPTLEPSTDEAAVRAIREIMDQYGILDVVVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERG--WRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+G+ P + + + AG+L E G +V + DE TS A +I LS++ R+ +
Sbjct: 65 NGTLGPSAERALAFAGQL-----EEGGSVKVTMWDERLTSLAAERLLIEADLSRAKRKRR 119
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ +
Sbjct: 120 VDQMAAVLILQGFL 133
>gi|352080245|ref|ZP_08951314.1| Holliday junction resolvase YqgF [Rhodanobacter sp. 2APBS1]
gi|351684954|gb|EHA68023.1| Holliday junction resolvase YqgF [Rhodanobacter sp. 2APBS1]
Length = 149
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 9/136 (6%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
G D+G TG+A+ + R L L +R + + L+ + Q+ + D ++GLP +
Sbjct: 5 FGFDVGSRITGVAIGNTYTASARALATLAVRDDNPDWPRLDTLRQQWQPDTLVVGLPLTL 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAE---AVDRMINMGLSKSARQT 179
DG+E P S + R A +L R G V L+DE +S E +GL + T
Sbjct: 65 DGAEQPASRRARQFAVQLQQR---YGLPVVLVDERHSSQEAAQRFAAARAVGLKRRRDAT 121
Query: 180 KTDAYAAVILLERYFS 195
DA AA ++LER+ +
Sbjct: 122 DIDAEAAAVILERWLA 137
>gi|408676820|ref|YP_006876647.1| putative Holliday junction resolvase [Streptomyces venezuelae ATCC
10712]
gi|328881149|emb|CCA54388.1| putative Holliday junction resolvase [Streptomyces venezuelae ATCC
10712]
Length = 156
Score = 57.0 bits (136), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G + VD+G +R G+A G P+ + R +L +I + E E ++
Sbjct: 3 MRRGRRIAVDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRLRQIVEEYEPIEVVV 62
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR+ AG +A A V L+DE T+ A + G+
Sbjct: 63 GLPRSLSGREGPAATKVRAFAGEMAKGIAP--VPVRLVDERMTTVTATQGLRASGVKAKK 120
Query: 177 RQTKTDAYAAVILLERYFSM-------SGQGTEIVL 205
++ D AAVI+L+ G+G E+V+
Sbjct: 121 GRSVIDQAAAVIILQNALEAERVSGNPPGEGVEVVI 156
>gi|430745894|ref|YP_007205023.1| RNAse H-fold protein YqgF [Singulisphaera acidiphila DSM 18658]
gi|430017614|gb|AGA29328.1| RNAse H-fold protein YqgF [Singulisphaera acidiphila DSM 18658]
Length = 159
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 49/161 (30%), Positives = 71/161 (44%), Gaps = 19/161 (11%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLEL-----QLLEIAQREETDEFIIGL 118
LG+D G R G A+S + PL V E+ +L + E D +IGL
Sbjct: 5 LGLDFGTKRVGAAVSDPRRMIATPLEV----HERTDLAQDARHYKNLVSEHEVDRIVIGL 60
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P G E ++K R+ +A G V DE TS+EA D +I +G+ + R+
Sbjct: 61 PLHTGGREGTSASKARTFGTWIA---NATGLPVLYYDERYTSSEAEDALIAIGMKRHKRK 117
Query: 179 TKTDAYAAVILLERYFSMSGQGTEIVL-----PKRVDLQEK 214
D AA ILL+ Y TE+ P VD++E+
Sbjct: 118 GYRDMLAAQILLQNYLDAGCPETELPATPLADPVDVDVEEE 158
>gi|157960959|ref|YP_001500993.1| Holliday junction resolvase-like protein [Shewanella pealeana ATCC
700345]
gi|157845959|gb|ABV86458.1| Holliday junction resolvase YqgF [Shewanella pealeana ATCC 700345]
Length = 141
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLK-LRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + RPL +K + G ++ + + D ++GLP +
Sbjct: 7 LGFDYGTKSIGIAIGQELTASARPLLSIKAVDGIPRWEEIGALITEWKPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + R A R++ R G +V DE T+A+A R+ MG K+ + + D
Sbjct: 67 DGTEQEMTQRARKFANRISGRF---GVKVETQDERLTTADAKARLFEMGGYKALTKGQVD 123
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 124 AMSAVLIVESYF 135
>gi|398800130|ref|ZP_10559406.1| RNAse H-fold protein YqgF [Pantoea sp. GM01]
gi|398096334|gb|EJL86659.1| RNAse H-fold protein YqgF [Pantoea sp. GM01]
Length = 138
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
LG D G G+A+ + R LT LK + + L+E +E + D ++GLP +
Sbjct: 7 LGFDFGTKSIGVAIGQQLTGTARALTALKAQDGTPDWNLIEKLLKEWQPDYVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + R A RL R G RV L DE ++ EA + G ++ ++ + D
Sbjct: 67 DGTEQELTARARKFANRLHGRF---GVRVELQDERLSTVEARADLFERGGFRALQKGQVD 123
Query: 183 AYAAVILLERYF 194
+ +AVI+LE +F
Sbjct: 124 SQSAVIILEDWF 135
>gi|119775606|ref|YP_928346.1| Holliday junction resolvase-like protein [Shewanella amazonensis
SB2B]
gi|119768106|gb|ABM00677.1| putative Holliday junction resolvase [Shewanella amazonensis SB2B]
Length = 139
Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLK-LRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+G D G G+A+ + PLT +K + G + ++ + D +IGLP +
Sbjct: 5 MGFDFGTKSIGIAVGQSITGSANPLTSIKAVDGIPNWEDIGKLINEWKPDLLVIGLPLNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + R A RL R G ++ DE T+A+A R+ +G K+ + + D
Sbjct: 65 DGTEQEMTQRARKFANRLNGRF---GVKIATQDERLTTADAKARLFELGGFKALTKGQVD 121
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 122 AVSAVLIVESYF 133
>gi|300718245|ref|YP_003743048.1| Holliday junction resolvase [Erwinia billingiae Eb661]
gi|299064081|emb|CAX61201.1| Putative Holliday junction resolvase [Erwinia billingiae Eb661]
Length = 140
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 68/137 (49%), Gaps = 11/137 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RPL LK + + +E +E E D ++GLP
Sbjct: 12 GTKSIGVAIGQQLTGTA-------RPLAALKAQDGTPDWNKIEALLKEWEPDRVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A R+ R G +V L DE ++ EA + G ++ +
Sbjct: 65 NMDGTEQPLTARARKFANRIHGRF---GVQVDLHDERLSTVEARAELFERGGFRALSKGS 121
Query: 181 TDAYAAVILLERYFSMS 197
D+ +AVI+LE +F S
Sbjct: 122 VDSLSAVIILESWFENS 138
>gi|223935593|ref|ZP_03627509.1| Holliday junction resolvase YqgF [bacterium Ellin514]
gi|223895601|gb|EEF62046.1| Holliday junction resolvase YqgF [bacterium Ellin514]
Length = 138
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLT-VLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
L +D G R GLA+S G +PL VL ++L ++ Q ++ + ++G+P++
Sbjct: 5 LAIDHGTKRIGLAISDELGVIAQPLEFVLAEPFANFLVRLKQLIQEKQVEMLLVGMPRNM 64
Query: 123 DGSETPQSNKVRSVAGRL--AVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
DGS P + KV+ L +V + W DE TSA+A +I + + R+ K
Sbjct: 65 DGSYGPAALKVQEFVTVLKDSVAIPIKTW-----DERLTSAQANRFLIQADVRRDKRKEK 119
Query: 181 TDAYAAVILLERYF 194
D AA ILL+ Y
Sbjct: 120 VDKTAAAILLQSYL 133
>gi|406965030|gb|EKD90712.1| hypothetical protein ACD_30C00100G0002 [uncultured bacterium]
Length = 130
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 70/131 (53%), Gaps = 8/131 (6%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSWDG 124
LGVD G + GLA+S+G PL V++ G + +L +I ++E+ I+G+P+ G
Sbjct: 4 LGVDYGKRKIGLAISEGQIASPLKVIETSGLLDSINKLTKIIEQEKIIRVIVGIPEGETG 63
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
V+ +L E+ V DE +S +A MI + LSK R+ + DAY
Sbjct: 64 ------KMVKKFCRQLEKGLVEQQVEVIETDETLSSKDARKVMIELNLSKKERKNE-DAY 116
Query: 185 AAVILLERYFS 195
+A+++L+R+ +
Sbjct: 117 SAMLILQRFLN 127
>gi|32130063|sp|Q9CJ63.2|RUVX_LACLA RecName: Full=Putative Holliday junction resolvase
Length = 143
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+++S G +P+ +K+ E EL +L + + + ++ ++GLPK
Sbjct: 6 LGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLPK 65
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+G E ++ R +LA E G V DE T+A+A +I+ G+ + R+
Sbjct: 66 HMNGDEGIRAEASRDYGTKLA---NEFGLEVAYQDERLTTAQAEKVLIDGGVRRKERKKS 122
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 123 IDKLAAVLILQNYL 136
>gi|408827099|ref|ZP_11211989.1| Holliday junction resolvase-like protein [Streptomyces somaliensis
DSM 40738]
Length = 157
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 48/157 (30%), Positives = 74/157 (47%), Gaps = 12/157 (7%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEF 114
S R G L VD+G +R G+A G P+ + R +L ++ + E E
Sbjct: 2 SGLRRGRRLAVDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRLRQLVEEYEPIEV 61
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSK 174
++GLP+S +G E P + KVR+ AG LA A V L+DE T+ A + G+
Sbjct: 62 VLGLPRSLNGREGPAATKVRAFAGELARGIAP--VPVRLVDERMTTVSATQGLRASGVKA 119
Query: 175 SARQTKTDAYAAVILLERYF-------SMSGQGTEIV 204
++ D AAVI+L+ + G+G E+V
Sbjct: 120 KKGRSVIDQAAAVIILQNALESERLSGNPPGEGVEVV 156
>gi|281490614|ref|YP_003352594.1| YqgF family resolvase [Lactococcus lactis subsp. lactis KF147]
gi|161702205|gb|ABX75666.1| Resolvase, YqgF family [Lactococcus lactis subsp. lactis KF147]
Length = 143
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+++S G +P+ +K+ E EL +L + + + ++ ++GLPK
Sbjct: 6 LGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLPK 65
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+G E ++ R +LA E G V DE T+A+A +I+ G+ + R+
Sbjct: 66 HMNGDEGVRAEASRDYGTKLA---NEFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 123 IDKLAAVLILQNYL 136
>gi|291541678|emb|CBL14788.1| conserved hypothetical protein TIGR00250 [Ruminococcus bromii
L2-63]
Length = 141
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 64/135 (47%), Gaps = 12/135 (8%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPLTVLKLRGEKLELQLLE----IAQREETDEFIIGLP 119
+ VDLG +RTG+A+ F P TV+ EK QLLE A+ + + ++GLP
Sbjct: 4 MSVDLGKARTGIAVCDKTEFLASPYTVI---FEKSPKQLLEKVSNTAKETKAELIVVGLP 60
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ DGSE + R+ A L + E G + DE T+ A + + R+
Sbjct: 61 KNMDGSEGESAQNARAFAENL---SNETGIECVMQDERGTTITAHNFLNTTNTRGKKRKN 117
Query: 180 KTDAYAAVILLERYF 194
D AA I+L+ Y
Sbjct: 118 VVDEVAATIILQDYL 132
>gi|260654149|ref|ZP_05859639.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33
E1]
gi|260631134|gb|EEX49328.1| putative Holliday junction resolvase [Jonquetella anthropi E3_33
E1]
Length = 141
Score = 56.6 bits (135), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL------QLLEIAQREETDEFIIGLP 119
+ +DLG R G+A++ PL E + +L E+ + TD ++GLP
Sbjct: 5 IALDLGTVRIGVAVTD-----PLGTFAQGVECWDAASGWMGKLGELMAQYGTDRLLLGLP 59
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E + KVR AGR+A R + ++ DE TS A MI LS+ R+
Sbjct: 60 RKEDGTEGEMAAKVRETAGRIAKRYPQV--QIRFWDERYTSRVAQSAMIEGDLSRRKRKG 117
Query: 180 KTDAYAAVILLERYFSMSG 198
K D AA ++L+ + G
Sbjct: 118 KVDQIAASLILQNFIDAGG 136
>gi|260886204|ref|ZP_05897467.1| putative holliday junction resolvase [Selenomonas sputigena ATCC
35185]
gi|330838890|ref|YP_004413470.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185]
gi|260864067|gb|EEX78567.1| putative holliday junction resolvase [Selenomonas sputigena ATCC
35185]
gi|329746654|gb|AEC00011.1| Holliday junction resolvase [Selenomonas sputigena ATCC 35185]
Length = 149
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 70/136 (51%), Gaps = 5/136 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLE---LQLLEIAQREETDEFIIGLPKSW 122
L +D+G G+A S G + V +R + + +L E+ + ETD FI+GLPK+
Sbjct: 6 LALDVGDRTIGVAASDGLGLTAQGVETIRRKSWDKDFARLKELMELYETDTFIVGLPKNM 65
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G++ + + VR A RL + +G +V DE ++ A +I +S++ R+ D
Sbjct: 66 NGTQGERCDVVRDFAQRLQKKF--KGSQVVFWDERLSTVAAERSLIAADVSRAKRRKVID 123
Query: 183 AYAAVILLERYFSMSG 198
AAV +L+ Y G
Sbjct: 124 KMAAVFILQGYLDNLG 139
>gi|385829709|ref|YP_005867522.1| YqgF family resolvase [Lactococcus lactis subsp. lactis CV56]
gi|418038712|ref|ZP_12677034.1| Hydrolase acting on ester bonds [Lactococcus lactis subsp. cremoris
CNCM I-1631]
gi|326405717|gb|ADZ62788.1| YqgF family resolvase [Lactococcus lactis subsp. lactis CV56]
gi|354692977|gb|EHE92770.1| Hydrolase acting on ester bonds [Lactococcus lactis subsp. cremoris
CNCM I-1631]
gi|374672212|dbj|BAL50103.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
lactis IO-1]
Length = 143
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+++S G +P+ +K+ E EL +L + + + ++ ++GLPK
Sbjct: 6 LGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFERLGVLIKEYKPEKVVLGLPK 65
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+G E ++ R +LA E G V DE T+A+A +I+ G+ + R+
Sbjct: 66 HMNGDEGIRAEASRDYGTKLA---NEFGLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 123 IDKLAAVLILQNYL 136
>gi|256371740|ref|YP_003109564.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM
10331]
gi|256008324|gb|ACU53891.1| Holliday junction resolvase YqgF [Acidimicrobium ferrooxidans DSM
10331]
Length = 138
Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKS 121
GG +LGVDLG R G+A+++G PL V+ RG +L E+ ++GLP
Sbjct: 6 GGRALGVDLGTKRIGVAVAEGSLALPLEVIDARG-PWRARLAELVASVGASVVVVGLPIG 64
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DGSE + +VR + LA V +DE +S A R+ G+ +R+
Sbjct: 65 LDGSEGRAAARVRQWSEGLAEHLEV---PVVFVDERLSSQAAERRLGAAGVDARSRRGAV 121
Query: 182 DAYAAVILLERYF 194
DA+AA +LER+
Sbjct: 122 DAFAATEILERWL 134
>gi|381402780|ref|ZP_09927464.1| Holliday junction resolvase YqgF [Pantoea sp. Sc1]
gi|380735979|gb|EIB97042.1| Holliday junction resolvase YqgF [Pantoea sp. Sc1]
Length = 139
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLPKSW 122
LG D G G+A+ + RPL LK + + L+E +E +F++ GLP +
Sbjct: 7 LGFDFGTKSIGVAVGQQLTGSARPLAALKAQDGTPDWLLIEKLLKEWQPDFVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P + + R A RL R G RV L DE ++ EA + G ++ + D
Sbjct: 67 DGTEQPLTARARKFANRLHGRF---GIRVELQDERLSTVEARAGLFERGGYRALSKGSVD 123
Query: 183 AYAAVILLERYF 194
+ +A I+L+ +F
Sbjct: 124 SQSAAIILQDWF 135
>gi|78355361|ref|YP_386810.1| Holliday junction resolvase YqgF [Desulfovibrio alaskensis G20]
gi|146325569|sp|Q316N1.1|RUVX_DESDG RecName: Full=Putative Holliday junction resolvase
gi|78217766|gb|ABB37115.1| Holliday junction resolvase YqgF [Desulfovibrio alaskensis G20]
Length = 144
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPL---TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG+D G RTG+A++ G + T++ + +LL + + E ++GLP
Sbjct: 4 LGIDYGTRRTGIAVTDGAGMMAFPRRTIVMSTRDAFFAELLSVVEEERPAGVVVGLPLLA 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G ET + +VR+ RL R++ VYL+ E +S EA + + GLS R+ D
Sbjct: 64 GGEETLITRQVRNFVARLRRRSS---LPVYLVAEELSSFEAGEDLREAGLSFREREAVVD 120
Query: 183 AYAAVILLERYFSM 196
AAV +LE + ++
Sbjct: 121 QQAAVRILESFLNL 134
>gi|118597223|sp|Q1JEI0.1|RUVX_STRPD RecName: Full=Putative Holliday junction resolvase
gi|94544881|gb|ABF34929.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10270]
Length = 139
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 72/136 (52%), Gaps = 9/136 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++K+ EK E +L E+ ++ + ++F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQT 179
+ + + +P+ + + + G V+ DE T+ EA +I +S+ R+
Sbjct: 64 NMNNTNSPRVDASITYGNHI---EHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 120
Query: 180 KTDAYAAVILLERYFS 195
D AA ++L+ Y +
Sbjct: 121 VIDKLAAQLILQNYLN 136
>gi|424845510|ref|ZP_18270121.1| RNAse H-fold protein YqgF [Jonquetella anthropi DSM 22815]
gi|363986948|gb|EHM13778.1| RNAse H-fold protein YqgF [Jonquetella anthropi DSM 22815]
Length = 141
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 13/139 (9%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL------QLLEIAQREETDEFIIGLP 119
+ +DLG R G+A++ PL E + +L E+ + TD ++GLP
Sbjct: 5 IALDLGTVRIGVAVTD-----PLGTFAQGIECWDAASGWMGKLGELMAQYGTDRLLLGLP 59
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E + KVR AGR+A R + ++ DE TS A MI LS+ R+
Sbjct: 60 RKEDGTEGEMAAKVRETAGRIAKRYPQV--QIRFWDERYTSRVAQSAMIEGDLSRRKRKG 117
Query: 180 KTDAYAAVILLERYFSMSG 198
K D AA ++L+ + G
Sbjct: 118 KVDQIAASLILQNFIDAGG 136
>gi|385787213|ref|YP_005818322.1| putative Holliday junction resolvase [Erwinia sp. Ejp617]
gi|310766485|gb|ADP11435.1| putative Holliday junction resolvase [Erwinia sp. Ejp617]
Length = 141
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RP+ LK + + +E +E + D ++GLP
Sbjct: 13 GTKSIGVAIGQQLTGTA-------RPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGLPL 65
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DGSE P + + R A RL R G +V L DE ++ EA + G ++ +
Sbjct: 66 NMDGSEQPLTARARKFANRLHGRF---GVQVDLHDERLSTVEARAELFERGGFRALSKGN 122
Query: 181 TDAYAAVILLERYF 194
D+ +AVI+LE +F
Sbjct: 123 VDSLSAVIILESWF 136
>gi|323702199|ref|ZP_08113866.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
574]
gi|323532886|gb|EGB22758.1| Holliday junction resolvase YqgF [Desulfotomaculum nigrificans DSM
574]
Length = 140
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+ALS G+ + L V++ RG+ L+ +L EI Q + ++ ++GLPK
Sbjct: 4 MGLDVGDKTIGVALSDPLGWTAQALEVIR-RGDNLDKDLNRLAEIVQEYQVEQILVGLPK 62
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ +G+ PQ KV + RL R V DE ++ A ++ +S+S R+
Sbjct: 63 NMNGTLGPQGEKVLAFIERLKERI---NLPVKTWDERLSTVAAERALLEADVSRSKRKKV 119
Query: 181 TDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 IDKMAAAVILQGYL 133
>gi|339066514|ref|ZP_08649488.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC2047]
gi|330719458|gb|EGG98088.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC2047]
Length = 142
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 9/132 (6%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKSW 122
L D G R G+A + PL +L R + Q L +I + + D F++G+P +
Sbjct: 10 LAFDFGTHRIGMAFGQALTGTASPLPILPARDGIPDWQKLGKIIEEWQPDAFVVGVPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P + + R A RL R + +Y +DE ++ EA +++ S D
Sbjct: 70 DGTEGPITPRARKFANRLHGRFHK---PIYTMDERLSTIEAKEKLAEFNNKNS---IGLD 123
Query: 183 AYAAVILLERYF 194
+ AA ++LE +F
Sbjct: 124 SMAATLILESWF 135
>gi|383191432|ref|YP_005201560.1| RNAse H-fold protein YqgF [Rahnella aquatilis CIP 78.65 = ATCC
33071]
gi|371589690|gb|AEX53420.1| RNAse H-fold protein YqgF [Rahnella aquatilis CIP 78.65 = ATCC
33071]
Length = 142
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQREE-TDEFIIGLPKSW 122
D G GLA+ + RPLT K + + Q +E +E D ++GLP +
Sbjct: 7 FAFDFGTKSIGLAIGQEVTGTARPLTAFKAQDGTPDWQKIEKLLKEWLPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P + + R A RL R G +V L DE ++ EA + + G ++ + D
Sbjct: 67 DGTEQPLTARARKFANRLHGRF---GVQVELHDERLSTVEARADLFDRGGFRALDKGSVD 123
Query: 183 AYAAVILLERYF 194
A +AVI+LE +F
Sbjct: 124 AASAVIILESWF 135
>gi|375147655|ref|YP_005010096.1| Holliday junction resolvase [Niastella koreensis GR20-10]
gi|361061701|gb|AEW00693.1| Holliday junction resolvase [Niastella koreensis GR20-10]
Length = 137
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
+ +D G RTGLA++ + + + +L L + +E + ++G PK+WD +
Sbjct: 5 ISIDYGKKRTGLAVTDPLQIIATGLTTVETPQLFKFLKDYFSKEPVELIVMGEPKNWDDT 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+T + V+ RL +++ DE TS A MI MGL K RQ K D
Sbjct: 65 DTHATPLVKKAVERLKREFPTIPIKMW--DERYTSKMASQAMIEMGLKKKQRQNKALVDE 122
Query: 184 YAAVILLERYF 194
AA I+L+ Y
Sbjct: 123 IAATIILQEYL 133
>gi|160931527|ref|ZP_02078922.1| hypothetical protein CLOLEP_00359 [Clostridium leptum DSM 753]
gi|156869398|gb|EDO62770.1| RNAse H domain protein, YqgF family [Clostridium leptum DSM 753]
Length = 139
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSW 122
LG+DLG +RTG+A+ PL V++ E+L ++++++ ++ +GLPK+
Sbjct: 4 LGIDLGKARTGVAVCDRAEMLASPLCVIQEHNRERLIEKIVKLSNERRAEQIALGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE + R L + G V +DE T+ A + + R+ D
Sbjct: 64 DGSEGESAQNAREFGALLQEKT---GLPVAFVDERGTTVTAHGYLNQTDVRGKKRKAVVD 120
Query: 183 AYAAVILLERYF 194
+ AAVI+L+ Y
Sbjct: 121 SVAAVIILQNYL 132
>gi|113969542|ref|YP_733335.1| Holliday junction resolvase-like protein [Shewanella sp. MR-4]
gi|114046775|ref|YP_737325.1| Holliday junction resolvase-like protein [Shewanella sp. MR-7]
gi|117919648|ref|YP_868840.1| Holliday junction resolvase-like protein [Shewanella sp. ANA-3]
gi|113884226|gb|ABI38278.1| Holliday junction resolvase YqgF [Shewanella sp. MR-4]
gi|113888217|gb|ABI42268.1| Holliday junction resolvase YqgF [Shewanella sp. MR-7]
gi|117611980|gb|ABK47434.1| Holliday junction resolvase YqgF [Shewanella sp. ANA-3]
Length = 141
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLR---GEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + +L L+ G ++ ++ + + D ++GLP +
Sbjct: 7 LGFDFGTKSIGVAIGQQITASATPLLSLKAVDGIPNWDEIGKLIKEWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E +++ R A RL A+ G ++ DE T+ +A R+ +G K+ + + D
Sbjct: 67 DGTEQEMTHRARKFANRLN---AKFGVKIVTQDERLTTTDAKARLFELGGFKALTKGQVD 123
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 124 AVSAVLIVESYF 135
>gi|337736898|ref|YP_004636345.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum DSM 1731]
gi|384458405|ref|YP_005670825.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum EA 2018]
gi|325509094|gb|ADZ20730.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum EA 2018]
gi|336291906|gb|AEI33040.1| Holliday junction resolvase-like protein [Clostridium
acetobutylicum DSM 1731]
Length = 135
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
LG+D+G G+ALS GF + +T ++ + E+ ++ +L E+ ++ E D + GLPK+
Sbjct: 4 LGIDVGNKTIGVALSDPLGFTAQGITTIRRKNEEEDIKELKELCEKYEVDTIVCGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ QS K V G V + + DE T+ A M+ LS+ R+ D
Sbjct: 64 NGTIGFQSEK---VLGFCEVIKQNIDVPIKMWDERLTTVAANRAMLEADLSRKKRKKLVD 120
Query: 183 AYAAVILLERYF 194
AA +L+ Y
Sbjct: 121 KVAATYILQGYL 132
>gi|399523856|ref|ZP_10764457.1| RNAse H domain protein, YqgF family [Atopobium sp. ICM58]
gi|398375118|gb|EJN52582.1| RNAse H domain protein, YqgF family [Atopobium sp. ICM58]
Length = 152
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 48/146 (32%), Positives = 71/146 (48%), Gaps = 10/146 (6%)
Query: 68 VDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSWDG 124
+D+G R G++ G P+ L + +L QL EI + E E I+GLP+ G
Sbjct: 1 MDVGTVRVGVSRCDPDGILTMPVVTLTRAPDSSDLDQLAEIVAQHEAIEVIVGLPRHLRG 60
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
E + R A RL G RV ++DE TS +A +R+ G+ + ++ D
Sbjct: 61 GEGISAKGARKYARRLKKLVG--GVRVAMVDERLTSNQAHERLRASGIPEREHRSVIDQV 118
Query: 185 AAVILLERYFS---MSGQ--GTEIVL 205
AA I+LE+ MSG+ G EIVL
Sbjct: 119 AAQIILEQALELERMSGRAPGEEIVL 144
>gi|306818739|ref|ZP_07452461.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35239]
gi|304648425|gb|EFM45728.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35239]
Length = 153
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 5/144 (3%)
Query: 63 GFSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFI-IGLP 119
G +GVD+G R G+A + P+ LK++ + EL+ L REET + +GLP
Sbjct: 4 GRLIGVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ +G E + RS A RLA + + V L+DE +S A +++ G+S +
Sbjct: 64 RLLNGKEGEAARMARSYARRLARKISP--IPVRLIDERLSSVTAHEKLRAAGVSTREHKK 121
Query: 180 KTDAYAAVILLERYFSMSGQGTEI 203
D AA +LE+ MS GT++
Sbjct: 122 MVDQVAAQQILEQALEMSNIGTDL 145
>gi|315122522|ref|YP_004063011.1| Holliday junction resolvase YqgF [Candidatus Liberibacter
solanacearum CLso-ZC1]
gi|313495924|gb|ADR52523.1| Holliday junction resolvase YqgF [Candidatus Liberibacter
solanacearum CLso-ZC1]
Length = 167
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 67 GVDLGLSRTGLALS---KGFC-VRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+DLG + G+A+S + F RP + K + + L+LL A E F+IGLP +
Sbjct: 21 SIDLGTKKIGIAISDLGRRFAHPRPFLIRK-KITQTALELLSFATTENIAAFVIGLPLNM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+GSE P+ R+ + R E DE T+ A +I+M +S+ R K D
Sbjct: 80 NGSEGPRVQSTRAFVQNMIDR--EINVPFIFWDERLTTVSAQQILIDMDVSRKKRAQKVD 137
Query: 183 AYAAVILLERYF 194
+ AA ++L+
Sbjct: 138 SIAASLILQEVL 149
>gi|256829569|ref|YP_003158297.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM
4028]
gi|256578745|gb|ACU89881.1| Holliday junction resolvase YqgF [Desulfomicrobium baculatum DSM
4028]
Length = 133
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVL-KLRGEKLELQLLEIAQREETDEFIIGLPKSWDG 124
LG+D G R GLA+++ P L K +KL L+ I + E + ++GLP +G
Sbjct: 4 LGIDYGQKRIGLAMARQGMAFPFKTLDKSTRDKLFADLMSIIESEGVEAIVLGLPLDMNG 63
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
ET + +V + LA R ++L++E TS +A R+ G+ + + D
Sbjct: 64 DETLTTRQVLNFRDSLARRTE---LPIHLVNEALTSFDARQRLREAGVPERKHKEMLDQM 120
Query: 185 AAVILLERYFSMS 197
AAV +LE Y S
Sbjct: 121 AAVCILETYLENS 133
>gi|256545147|ref|ZP_05472513.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170]
gi|256399188|gb|EEU12799.1| Holliday junction resolvase [Anaerococcus vaginalis ATCC 51170]
Length = 139
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 66/138 (47%), Gaps = 6/138 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPKSW 122
+G+DLG G+ALS F + + ++ +K L +L+EI +E + IIGLPK+
Sbjct: 5 MGLDLGDKTIGVALSDPFFITAQAYITIKRKKASLDIEKLIEIINEKEVNLIIIGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+ + PQ+ KV S L + DE T+ ++ +++M ++ R+ D
Sbjct: 65 NNTLGPQAMKVISFVDLL---KKSTDIEIKYQDERMTTIQSDQVLMDMNVNLKDRKKYVD 121
Query: 183 AYAAVILLERYFSMSGQG 200
AA +L+ Y G
Sbjct: 122 KIAASFILQTYLDGRNNG 139
>gi|125623030|ref|YP_001031513.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris MG1363]
gi|389853355|ref|YP_006355599.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris NZ9000]
gi|167012732|sp|A2RHM2.1|RUVX_LACLM RecName: Full=Putative Holliday junction resolvase
gi|124491838|emb|CAL96758.1| putative Hollyday junction resolvase [Lactococcus lactis subsp.
cremoris MG1363]
gi|300069777|gb|ADJ59177.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris NZ9000]
Length = 143
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+++S G +P+ +K+ E EL +L + + + ++ ++GLPK
Sbjct: 6 LGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGLPK 65
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+G E ++ R +LA + G V DE T+A+A +I+ G+ + R+
Sbjct: 66 HMNGDEGIRAEASRDYGTKLANKF---GLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 123 IDKLAAVLILQNYL 136
>gi|306821649|ref|ZP_07455247.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
gi|304550394|gb|EFM38387.1| Holliday junction resolvase [Eubacterium yurii subsp. margaretiae
ATCC 43715]
Length = 142
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G + G+A+S G +P ++ + + ++Q +L+I + E ++GLPK
Sbjct: 5 LGLDIGKQKIGIAMSDLLGMTAQPKATIRSKNLEEQMQKILDIIKENSIKEVVVGLPKDI 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G + Q+ +S +L ++ ++ +DE TS A+ + +M + K + D
Sbjct: 65 NGKDGEQALWTKSFVEKLTLK--NENIKIIYIDERYTSKLALKNLSHMSMKKVKDKELID 122
Query: 183 AYAAVILLERYFSMSGQGT 201
+ AA +LE Y G
Sbjct: 123 SLAAASILETYLRQKENGV 141
>gi|294628345|ref|ZP_06706905.1| conserved hypothetical protein [Streptomyces sp. e14]
gi|292831678|gb|EFF90027.1| conserved hypothetical protein [Streptomyces sp. e14]
Length = 154
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 73/156 (46%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R +L ++ + E E ++
Sbjct: 1 MRRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVEEYEPIEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR+ AG LA A V L+DE T+ A + G+
Sbjct: 61 GLPRSLKGGEGPAAVKVRAFAGELAKGVAP--VPVRLVDERMTTVTASQGLRASGVKSKK 118
Query: 177 RQTKTDAYAAVILLERYFSM-------SGQGTEIVL 205
++ D AAVI+L++ G+G E+V+
Sbjct: 119 GRSVIDQAAAVIILQQALESERVSGEPPGEGVEVVI 154
>gi|307700938|ref|ZP_07637963.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16]
gi|307613933|gb|EFN93177.1| RNAse H domain protein, YqgF family [Mobiluncus mulieris FB024-16]
Length = 153
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 5/144 (3%)
Query: 63 GFSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFI-IGLP 119
G +GVD+G R G+A + P+ LK++ + EL+ L REET + +GLP
Sbjct: 4 GRLIGVDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETATAVFVGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ +G E + RS A RLA + + V L+DE +S A +++ G+S +
Sbjct: 64 RLLNGKEGEAARMARSYARRLARKISP--IPVRLIDERLSSVTAHEKLRAAGVSTREHKK 121
Query: 180 KTDAYAAVILLERYFSMSGQGTEI 203
D AA +LE+ MS GT++
Sbjct: 122 MVDQVAAQQILEQALEMSNIGTDL 145
>gi|387872589|ref|YP_005803973.1| Holliday junction resolvase [Erwinia pyrifoliae DSM 12163]
gi|283479686|emb|CAY75602.1| putative Holliday junction resolvase [Erwinia pyrifoliae DSM 12163]
Length = 141
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RP+ LK + + +E +E + D ++GLP
Sbjct: 13 GTKSIGVAIGQQLTGTA-------RPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGLPL 65
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DGSE P + + R A RL R G +V L DE ++ EA + G ++ +
Sbjct: 66 NMDGSEQPLTVRARKFANRLHGRF---GVQVDLHDERLSTVEARAELFERGGFRALSKGN 122
Query: 181 TDAYAAVILLERYF 194
D+ +AVI+LE +F
Sbjct: 123 VDSLSAVIILESWF 136
>gi|302874707|ref|YP_003843340.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
gi|307690680|ref|ZP_07633126.1| Holliday junction resolvase-like protein [Clostridium cellulovorans
743B]
gi|302577564|gb|ADL51576.1| Holliday junction resolvase YqgF [Clostridium cellulovorans 743B]
Length = 135
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S GF + +T + + K +++ ++ D ++GLPK+
Sbjct: 4 LGLDVGNKTIGVAVSDPLGFTAQGITTINRKNIKTDIETVVNYCNEYTVDTIVVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV + +L + + DE T+ A M+ LS++ R D
Sbjct: 64 NGTLGPQSEKVMAFVEKL---KKNTDINIKMWDERLTTVAAHKAMLEADLSRAKRNKIVD 120
Query: 183 AYAAVILLERYF 194
AA +L+ Y
Sbjct: 121 KVAATYILQGYL 132
>gi|441497332|ref|ZP_20979547.1| Putative Holliday junction resolvase [Fulvivirga imtechensis AK7]
gi|441438857|gb|ELR72186.1| Putative Holliday junction resolvase [Fulvivirga imtechensis AK7]
Length = 139
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+G+D GL RTG+A++ + PLT + + + L + +E + F++G+PK+
Sbjct: 5 VGIDFGLKRTGIAVTDPMKIIASPLTTVATK--DIFPFLKDYCGKESVEGFVVGMPKNLQ 62
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT-- 181
+T ++ VR L + G V +DE TS A+D MI G+ K R+ K
Sbjct: 63 NQDTHATSSVRKFIANL--QKQFPGIGVTEVDERFTSKIALDAMIAGGMKKKDRRDKANI 120
Query: 182 DAYAAVILLERYF 194
D +A ++L+ Y
Sbjct: 121 DKISATVILQSYL 133
>gi|333924397|ref|YP_004497977.1| Holliday junction resolvase [Desulfotomaculum carboxydivorans
CO-1-SRB]
gi|333749958|gb|AEF95065.1| Holliday junction resolvase [Desulfotomaculum carboxydivorans
CO-1-SRB]
Length = 140
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 71/134 (52%), Gaps = 9/134 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+ALS G+ + L V++ RG+ L+ +L EI Q + ++ ++GLPK
Sbjct: 4 MGLDVGDKTIGVALSDPLGWTAQALEVIR-RGDNLDKDLNRLAEIVQEYQVEQILVGLPK 62
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ +G+ PQ KV + RL R V DE ++ A ++ +S+S R+
Sbjct: 63 NMNGTLGPQGEKVLAFIERLKERI---DLPVKTWDERLSTVAAERALLEADVSRSKRKKV 119
Query: 181 TDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 IDKMAAAVILQGYL 133
>gi|259909608|ref|YP_002649964.1| Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
gi|224965230|emb|CAX56762.1| Putative Holliday junction resolvase [Erwinia pyrifoliae Ep1/96]
Length = 140
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RP+ LK + + +E +E + D ++GLP
Sbjct: 12 GTKSIGVAIGQQLTGTA-------RPMNALKAQDGIPDWNRIEALLKEWQPDRVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DGSE P + + R A RL R G +V L DE ++ EA + G ++ +
Sbjct: 65 NMDGSEQPLTVRARKFANRLHGRF---GVQVDLHDERLSTVEARAELFERGGFRALSKGN 121
Query: 181 TDAYAAVILLERYF 194
D+ +AVI+LE +F
Sbjct: 122 VDSLSAVIILESWF 135
>gi|342210543|ref|ZP_08703306.1| putative Holliday junction resolvase [Mycoplasma anatis 1340]
gi|341579424|gb|EGS29447.1| putative Holliday junction resolvase [Mycoplasma anatis 1340]
Length = 141
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 8/138 (5%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEK------LELQLLEIAQREETDEFIIGLP 119
L +DLG G A+S + + R E+ + L I E DE I+GLP
Sbjct: 4 LALDLGTRTCGFAISDELAIIASPLENFRFEENDFNSVIHKTLAYINHYENIDEIILGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGW--RVYLLDEHRTSAEAVDRMINMGLSKSAR 177
+GS++ ++ V L + ++ L++E+ ++ +A MI GLS+ R
Sbjct: 64 LRSNGSKSERTIMVEEFKSILESNLVKNNINIKIKLINEYGSTKDAESVMIQAGLSRKKR 123
Query: 178 QTKTDAYAAVILLERYFS 195
+ D AA I+LERY +
Sbjct: 124 KNHKDKLAAAIILERYLN 141
>gi|408673076|ref|YP_006872824.1| Holliday junction resolvase [Emticicia oligotrophica DSM 17448]
gi|387854700|gb|AFK02797.1| Holliday junction resolvase [Emticicia oligotrophica DSM 17448]
Length = 135
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 65/133 (48%), Gaps = 4/133 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTGLA++ + + + + L L + Q E + F++G+PK+ DGS
Sbjct: 5 LAIDYGAKRTGLAVTDPSKIIASALETVPTDSLLDYLKKYTQNEAVEAFVVGMPKNLDGS 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
T + V L ++ ++L DE TS A+ MI G+ K RQ K D
Sbjct: 65 STDGTAYVERFV--LELKNIFPEIPIHLHDERFTSKMAMQTMIAGGMKKKDRQVKGNIDK 122
Query: 184 YAAVILLERYFSM 196
+AVI+L+ + +
Sbjct: 123 ISAVIILQSFMGV 135
>gi|377577179|ref|ZP_09806162.1| putative Holliday junction resolvase [Escherichia hermannii NBRC
105704]
gi|377541707|dbj|GAB51327.1| putative Holliday junction resolvase [Escherichia hermannii NBRC
105704]
Length = 138
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLP 119
G L D G G+A+ + RPLT +K G Q ++ + + + ++GLP
Sbjct: 3 GTLLAFDFGTKSIGVAIGQRITGTARPLTAIKANDGTPDWTQFEKLLKEWQPELVVVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+ P +++ R A RL R G +V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTNQPLTDRARKFANRLHGRF---GVKVELQDERLSTVEARAGLFERGGFRALNKG 119
Query: 180 KTDAYAAVILLERYFSMSG 198
D+ +AVI+LE YF G
Sbjct: 120 SVDSASAVIILESYFENHG 138
>gi|402298197|ref|ZP_10817907.1| Holliday junction resolvase-like protein [Bacillus alcalophilus
ATCC 27647]
gi|401726600|gb|EJS99821.1| Holliday junction resolvase-like protein [Bacillus alcalophilus
ATCC 27647]
Length = 138
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQL---LEIAQREETDEFIIGLP 119
+LG+D+G G+ALS G+ + L LK + L+ + E+ Q E ++GLP
Sbjct: 3 TLGLDVGTKTIGVALSDELGWTAQGLVTLKRSEDDLQSDIKSVSELVQEHEVTAIVVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ +G+ P ++ A +L G +V L DE T+ A +I +S+ R+
Sbjct: 63 KNMNGTIGPSGEMCQAFAKQLENEI--EGIQVKLWDERLTTVAAERMLITADVSRKKRKQ 120
Query: 180 KTDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 121 VIDKMAAVLILQGYL 135
>gi|406915282|gb|EKD54380.1| hypothetical protein ACD_60C00090G0029 [uncultured bacterium]
Length = 142
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 70/135 (51%), Gaps = 10/135 (7%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G D G+ R G+A+ + RPL T+ +G +L ++ E D FIIG+P +
Sbjct: 10 FGFDFGMKRIGIAIGQTITKTARPLITIQASKGVPNWDKLTKLIHTWEPDAFIIGIPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
DG+E P ++ RS R ++ + ++ +DE ++ +A +R+ G K+ + +
Sbjct: 70 DGTEQPITHMARSFG-----RELQKHYHLPIFEIDERLSTKDAKERLFEEGGYKALQDGQ 124
Query: 181 TDAYAAVILLERYFS 195
D+ AA ++L+ + +
Sbjct: 125 VDSVAAQLILQNWLN 139
>gi|452909773|ref|ZP_21958457.1| Putative Holliday junction resolvase YggF [Kocuria palustris PEL]
gi|452835145|gb|EME37942.1| Putative Holliday junction resolvase YggF [Kocuria palustris PEL]
Length = 199
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 49/142 (34%), Positives = 73/142 (51%), Gaps = 6/142 (4%)
Query: 61 RGGFSLGVDLGLSRTGLALS--KGFCVRPLTVL-KLRGEKLELQLL-EIAQREETDEFII 116
R G LGVD+G R G+ALS + PLT L + R + +++L + E E ++
Sbjct: 15 RPGRRLGVDVGTVRVGVALSDPESILATPLTTLERDRRKGFDIKLAANLVHEHEVVEVVV 74
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRV--YLLDEHRTSAEAVDRMINMGLSK 174
GLP + G T + + A L R A +GW V +LDE +SAE+ ++ G+S+
Sbjct: 75 GLPLAMSGGHTDSTRAAIAWAQGLQRRLAAKGWSVPVRMLDERWSSAESHRALLQAGVSR 134
Query: 175 SARQTKTDAYAAVILLERYFSM 196
+ K D AAV +LE SM
Sbjct: 135 REHRDKVDRQAAVTILEAALSM 156
>gi|153953951|ref|YP_001394716.1| Holliday junction resolvase-like protein [Clostridium kluyveri DSM
555]
gi|219854565|ref|YP_002471687.1| hypothetical protein CKR_1222 [Clostridium kluyveri NBRC 12016]
gi|189046093|sp|A5N7T7.1|RUVX_CLOK5 RecName: Full=Putative Holliday junction resolvase
gi|254767509|sp|B9E198.1|RUVX_CLOK1 RecName: Full=Putative Holliday junction resolvase
gi|146346832|gb|EDK33368.1| Predicted Holliday junction resolvase [Clostridium kluyveri DSM
555]
gi|219568289|dbj|BAH06273.1| hypothetical protein [Clostridium kluyveri NBRC 12016]
Length = 137
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
LG+D+G G+ALS G + +T +K +GE +++ L+ I + + + + GLPK+
Sbjct: 4 LGLDIGNKTIGVALSDPLGITAQGITTIKRKGEDRDIEELKAICDKYKVEVIVCGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRL--AVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+G+ PQS KV + + + W DE T+ A M+ LS++ R+
Sbjct: 64 NGTLGPQSEKVLKFCNIIEEVINLPIKMW-----DERLTTVAANKAMLEADLSRAKRKKI 118
Query: 181 TDAYAAVILLERYF 194
D AA +L+ Y
Sbjct: 119 VDKMAATYILQGYL 132
>gi|322834236|ref|YP_004214263.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602]
gi|384259418|ref|YP_005403352.1| Holliday junction resolvase-like protein [Rahnella aquatilis HX2]
gi|321169437|gb|ADW75136.1| Holliday junction resolvase YqgF [Rahnella sp. Y9602]
gi|380755394|gb|AFE59785.1| Holliday junction resolvase-like protein [Rahnella aquatilis HX2]
Length = 142
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQREE-TDEFIIGLPKSW 122
D G GLA+ + RPLT K + + Q +E +E D ++GLP +
Sbjct: 7 FAFDFGTKSIGLAIGQEVTGTARPLTSFKAQDGTPDWQKIEKLLKEWLPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P + + R A RL R G +V L DE ++ EA + + G ++ + D
Sbjct: 67 DGTEQPLTARARKFANRLHGRF---GVQVELHDERLSTVEARADLFDRGGFRALDKGSVD 123
Query: 183 AYAAVILLERYF 194
A +AVI+LE +F
Sbjct: 124 AASAVIILESWF 135
>gi|86741899|ref|YP_482299.1| Holliday junction resolvase-like protein [Frankia sp. CcI3]
gi|124107440|sp|Q2J822.1|RUVX_FRASC RecName: Full=Putative Holliday junction resolvase
gi|86568761|gb|ABD12570.1| Holliday junction resolvase YqgF [Frankia sp. CcI3]
Length = 202
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 50/142 (35%), Positives = 67/142 (47%), Gaps = 8/142 (5%)
Query: 54 RKKDSLWRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKL--RGEKLELQLLEIAQRE 109
R DS R G +GVD+G R G+A S G P+T L RG QL+ I +
Sbjct: 17 RPGDS--RPGVRIGVDVGSVRVGVAASDPGGVLAVPVTTLARDRRGNADIDQLVLIVRER 74
Query: 110 ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN 169
+ E ++GLP+ G E VR A LA R A V +DE T+ A RM
Sbjct: 75 QAVEVVVGLPRQMSGQEGRAVRLVRQYAEVLAERIAP--VPVRFVDERLTTVAAHRRMAE 132
Query: 170 MGLSKSARQTKTDAYAAVILLE 191
G+ AR++ D AAV +L+
Sbjct: 133 RGVRSRARRSLVDQEAAVQILQ 154
>gi|452851698|ref|YP_007493382.1| putative Holliday junction resolvase [Desulfovibrio piezophilus]
gi|451895352|emb|CCH48231.1| putative Holliday junction resolvase [Desulfovibrio piezophilus]
Length = 136
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/133 (33%), Positives = 70/133 (52%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKS 121
+L +D GL R GLA+S G V P T+ + L +L+EI +E + ++GLP S
Sbjct: 3 ALSIDFGLKRVGLAVSDRTGTLVSPYRTIERTTRNALFDELIEIIVKESVEAVVVGLPLS 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
G +T + + R+ A L R +R +YL+DE TSAEA + + + R+
Sbjct: 63 LSGEDTLTTRQARNFAASLE-RRTDRP--IYLMDERLTSAEAEEELNAANVRGKKRKMAL 119
Query: 182 DAYAAVILLERYF 194
D+ AAVI+L +
Sbjct: 120 DSQAAVIILRSWL 132
>gi|410681452|ref|YP_006933854.1| Holliday junction resolvase [Streptococcus pyogenes A20]
gi|395454815|dbj|BAM31154.1| Holliday junction resolvase-like protein [Streptococcus pyogenes M1
476]
gi|409694041|gb|AFV38901.1| putative Holliday junction resolvase [Streptococcus pyogenes A20]
Length = 136
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 9/136 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++K+ EK E +L E+ ++ + ++F+IGLPK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQT 179
+ + + P+ + + + G V+ DE T+ EA +I +S+ R+
Sbjct: 61 NMNNTNGPRVDASITYGNHI---EHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKRKK 117
Query: 180 KTDAYAAVILLERYFS 195
D AA ++L+ Y +
Sbjct: 118 VIDKLAAQLILQNYLN 133
>gi|296114061|ref|YP_003627999.1| putative holliday junction resolvase [Moraxella catarrhalis RH4]
gi|416156777|ref|ZP_11604691.1| putative Holliday junction resolvase [Moraxella catarrhalis
101P30B1]
gi|416218717|ref|ZP_11625034.1| putative Holliday junction resolvase [Moraxella catarrhalis 7169]
gi|416221636|ref|ZP_11625854.1| putative Holliday junction resolvase [Moraxella catarrhalis
103P14B1]
gi|416230408|ref|ZP_11628407.1| putative Holliday junction resolvase [Moraxella catarrhalis
46P47B1]
gi|416232549|ref|ZP_11628993.1| putative Holliday junction resolvase [Moraxella catarrhalis
12P80B1]
gi|416240359|ref|ZP_11632370.1| putative Holliday junction resolvase [Moraxella catarrhalis BC1]
gi|416241439|ref|ZP_11632766.1| putative Holliday junction resolvase [Moraxella catarrhalis BC7]
gi|416248200|ref|ZP_11636119.1| putative Holliday junction resolvase [Moraxella catarrhalis BC8]
gi|416251549|ref|ZP_11637758.1| putative Holliday junction resolvase [Moraxella catarrhalis CO72]
gi|416256622|ref|ZP_11639798.1| putative Holliday junction resolvase [Moraxella catarrhalis O35E]
gi|421780841|ref|ZP_16217328.1| putative holliday junction resolvase [Moraxella catarrhalis RH4]
gi|295921755|gb|ADG62106.1| putative holliday junction resolvase [Moraxella catarrhalis BBH18]
gi|326559452|gb|EGE09875.1| putative Holliday junction resolvase [Moraxella catarrhalis 7169]
gi|326561286|gb|EGE11645.1| putative Holliday junction resolvase [Moraxella catarrhalis
46P47B1]
gi|326565174|gb|EGE15365.1| putative Holliday junction resolvase [Moraxella catarrhalis
103P14B1]
gi|326566128|gb|EGE16285.1| putative Holliday junction resolvase [Moraxella catarrhalis BC1]
gi|326567831|gb|EGE17935.1| putative Holliday junction resolvase [Moraxella catarrhalis
12P80B1]
gi|326568167|gb|EGE18249.1| putative Holliday junction resolvase [Moraxella catarrhalis BC8]
gi|326572195|gb|EGE22191.1| putative Holliday junction resolvase [Moraxella catarrhalis BC7]
gi|326572810|gb|EGE22795.1| putative Holliday junction resolvase [Moraxella catarrhalis CO72]
gi|326573746|gb|EGE23704.1| putative Holliday junction resolvase [Moraxella catarrhalis O35E]
gi|326574629|gb|EGE24565.1| putative Holliday junction resolvase [Moraxella catarrhalis
101P30B1]
gi|407812137|gb|EKF82924.1| putative holliday junction resolvase [Moraxella catarrhalis RH4]
Length = 158
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 6/145 (4%)
Query: 64 FSLGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPK 120
+L +D G+ + G+AL RP +L + G+ LL I + D ++GLP
Sbjct: 6 LTLALDYGVKKMGMALGNSITHNARPFDILAMNNGQPDWDNLLGIIEHWGIDRVLVGLPL 65
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAER--GWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
+ DG+E+ + + A RLA R ER V++ DE +S EA ++ G S+ +
Sbjct: 66 NMDGTESMLTKRAHKFARRLAHRLGERRQAVSVFIYDERLSSKEAKMIALDNGWIASSSE 125
Query: 179 TKTDAYAAVILLERYFSMSGQGTEI 203
D AA +LL+ Y+ +
Sbjct: 126 -PIDDIAACLLLDSYYHAPNHAIYV 149
>gi|33152804|ref|NP_874157.1| Holliday junction resolvase-like protein [Haemophilus ducreyi
35000HP]
gi|62901013|sp|Q7VKS6.1|RUVX_HAEDU RecName: Full=Putative Holliday junction resolvase
gi|33149028|gb|AAP96546.1| conserved hypothetical protein [Haemophilus ducreyi 35000HP]
Length = 138
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPK 120
G +S+G +G S T A S LT K + Q +E I + + D ++GLP
Sbjct: 11 GTYSIGCAVGQSITKTAQS-------LTAFKSQDGIPNWQHIEKIIKEWQPDLLVVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DGSE P + + R A RL R V L DE T+ EA + + G K+ ++ K
Sbjct: 64 NMDGSEQPLTQRARKFANRLNGRF---NLPVALQDERLTTTEAKSEIFSRGGYKALKKDK 120
Query: 181 TDAYAAVILLERYF 194
D +A ++LE +F
Sbjct: 121 IDTISACLILESWF 134
>gi|170725697|ref|YP_001759723.1| Holliday junction resolvase-like protein [Shewanella woodyi ATCC
51908]
gi|169811044|gb|ACA85628.1| Holliday junction resolvase YqgF [Shewanella woodyi ATCC 51908]
Length = 139
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLK-LRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + PL +K + G ++ + + D ++GLP +
Sbjct: 7 LGFDYGTKSIGIAIGQSLTGSANPLLSIKAVDGIPKWEEIGMLIEEWRPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE + + + A R++ R G +V DE T+A+A R+ MG K+ + + D
Sbjct: 67 DGSEQEMTQRAKKFANRISGRF---GVKVETQDERLTTADAKTRLFEMGGYKALTKGQVD 123
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 124 AMSAVLIVESYF 135
>gi|91794024|ref|YP_563675.1| Holliday junction resolvase-like protein [Shewanella denitrificans
OS217]
gi|123060738|sp|Q12KS4.1|RUVX_SHEDO RecName: Full=Putative Holliday junction resolvase
gi|91716026|gb|ABE55952.1| Holliday junction resolvase YqgF [Shewanella denitrificans OS217]
Length = 141
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVR--PLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
LG D G G+A+ + PL LK + +E +E + D ++GLP +
Sbjct: 8 LGFDYGTKSIGVAVGQSITASASPLLALKAQDGIPNWDEIEKLIKEWQPDLVVVGLPLNM 67
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + + A R++ R G +V DE T+A+A R+ +G K+ + + D
Sbjct: 68 DGTEQDITQRAKKFANRISGRF---GVKVLTQDERLTTADAKARLFELGGYKALTKGQVD 124
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 125 AVSAVLIIESYF 136
>gi|284040266|ref|YP_003390196.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74]
gi|283819559|gb|ADB41397.1| Holliday junction resolvase YqgF [Spirosoma linguale DSM 74]
Length = 142
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G+ RTG+A++ + + + ++ L RE + F++GLPK DG
Sbjct: 5 LAIDYGMKRTGIAVTDPLQLIASALETVPSHEVLKFLKAYLVREPVEAFVVGLPKGLDGE 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+T + +VR L + A VY DE TS A+ MI G +K R+ K D
Sbjct: 65 DTDNTPRVRKFVTHL--QNAFPDIPVYWHDERFTSVMALQAMIAGGSTKKDRREKGNIDK 122
Query: 184 YAAVILLERYF 194
+A I+L+ Y
Sbjct: 123 VSAAIILQSYM 133
>gi|421494078|ref|ZP_15941430.1| hypothetical protein MU9_2600 [Morganella morganii subsp. morganii
KT]
gi|455738405|ref|YP_007504671.1| Putative Holliday junction resolvase [Morganella morganii subsp.
morganii KT]
gi|400191635|gb|EJO24779.1| hypothetical protein MU9_2600 [Morganella morganii subsp. morganii
KT]
gi|455419968|gb|AGG30298.1| Putative Holliday junction resolvase [Morganella morganii subsp.
morganii KT]
Length = 140
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+GV +G + TG A RPL LK R + +L+ RE + D ++GLP + D
Sbjct: 15 SIGVAVGQTITGTA-------RPLAALKAREGIPDWELIAAVFREWQPDYVVVGLPLNMD 67
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+ +N+ + A RL R G R L DE ++ EA + G ++ + K D+
Sbjct: 68 GTPQLVTNQAKKFANRLHGR---FGIRAELHDERLSTVEARANLFADGGYRALGKDKVDS 124
Query: 184 YAAVILLERYF 194
+AVI+LE +F
Sbjct: 125 ASAVIILESWF 135
>gi|357414542|ref|YP_004926278.1| Holliday junction resolvase YqgF [Streptomyces flavogriseus ATCC
33331]
gi|320011911|gb|ADW06761.1| Holliday junction resolvase YqgF [Streptomyces flavogriseus ATCC
33331]
Length = 157
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 48/158 (30%), Positives = 72/158 (45%), Gaps = 12/158 (7%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEF 114
S R G L +D+G +R G+A G P+ + R +L +I + E E
Sbjct: 2 SQMRRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGQIVEEYEPIEV 61
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSK 174
I+GLP+S G E P + KVR+ A A A V LLDE T+ A + G+
Sbjct: 62 IVGLPRSLGGGEGPAAAKVRAFAQVFARAVAP--IPVRLLDERMTTVTATQGLRASGVKS 119
Query: 175 SARQTKTDAYAAVILLERYF-------SMSGQGTEIVL 205
++ D AAV++L+ S G+G E+V+
Sbjct: 120 KKGRSVIDQAAAVVILQNALESERASGSAPGEGVEVVV 157
>gi|229820506|ref|YP_002882032.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333]
gi|229566419|gb|ACQ80270.1| Holliday junction resolvase YqgF [Beutenbergia cavernae DSM 12333]
Length = 163
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 43/129 (33%), Positives = 68/129 (52%), Gaps = 5/129 (3%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQREETD-EFIIGLPKSW 122
LGVD+G R G+A G P+T L RG++ + + RE++ E +IGLP++
Sbjct: 3 LGVDVGSVRVGVARCDPSGVIATPVTTLARRGKRGGVAEIAGLVREDSAIEVVIGLPRAL 62
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG E + + R+ AG++A RA E V L+DE ++ A M G + + D
Sbjct: 63 DGHEGSSARQARAYAGQVA-RAVEP-VPVRLVDERLSTVAAHRAMHEAGRAGRRHREVVD 120
Query: 183 AYAAVILLE 191
AAV++L+
Sbjct: 121 QAAAVVILQ 129
>gi|15675863|ref|NP_270037.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
SF370]
gi|71911609|ref|YP_283159.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS5005]
gi|32130060|sp|Q99XP4.1|RUVX_STRP1 RecName: Full=Putative Holliday junction resolvase
gi|13623097|gb|AAK34758.1| conserved hypothetical protein [Streptococcus pyogenes M1 GAS]
gi|71854391|gb|AAZ52414.1| endonuclease involved in recombination [Streptococcus pyogenes
MGAS5005]
Length = 139
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 9/136 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++K+ EK E +L E+ ++ + ++F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQT 179
+ + + P+ + + + G V+ DE T+ EA +I +S+ R+
Sbjct: 64 NMNNTNGPRVDASITYGNHI---EHLFGLPVHYQDERLTTVEAKRMLIEQADISRGKRKK 120
Query: 180 KTDAYAAVILLERYFS 195
D AA ++L+ Y +
Sbjct: 121 VIDKLAAQLILQNYLN 136
>gi|21911333|ref|NP_665601.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS315]
gi|383480755|ref|YP_005389649.1| putative Holliday junction resolvase [Streptococcus pyogenes
MGAS15252]
gi|383494736|ref|YP_005412412.1| putative Holliday junction resolvase [Streptococcus pyogenes
MGAS1882]
gi|386363565|ref|YP_006072896.1| putative Holliday junction resolvase [Streptococcus pyogenes
Alab49]
gi|421891847|ref|ZP_16322592.1| Putative Holliday junction resolvase YggF [Streptococcus pyogenes
NS88.2]
gi|21905548|gb|AAM80404.1| conserved hypothetical protein [Streptococcus pyogenes MGAS315]
gi|350277974|gb|AEQ25342.1| putative Holliday junction resolvase [Streptococcus pyogenes
Alab49]
gi|378928745|gb|AFC66951.1| putative Holliday junction resolvase [Streptococcus pyogenes
MGAS15252]
gi|378930463|gb|AFC68880.1| putative Holliday junction resolvase [Streptococcus pyogenes
MGAS1882]
gi|379982391|emb|CCG26314.1| Putative Holliday junction resolvase YggF [Streptococcus pyogenes
NS88.2]
Length = 136
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 9/136 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++K+ EK E +L E+ ++ + ++F+IGLPK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQT 179
+ + + P+ + + + G V+ DE T+ EA +I +S+ R+
Sbjct: 61 NMNNTNGPRVDASITYGNHI---EHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 117
Query: 180 KTDAYAAVILLERYFS 195
D AA ++L+ Y +
Sbjct: 118 VIDKLAAQLILQNYLN 133
>gi|404451183|ref|ZP_11016154.1| Holliday junction resolvase-like protein [Indibacter alkaliphilus
LW1]
gi|403763122|gb|EJZ24103.1| Holliday junction resolvase-like protein [Indibacter alkaliphilus
LW1]
Length = 137
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +DLG RTG+A++ + + ++ KL L + ++E D ++G P
Sbjct: 2 GRILAIDLGTKRTGIAVTDTLQILANPLETVQTFKLVDFLHDYFKKEIVDTIVLGYPTHL 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT- 181
DG + +V S+ RL ++ + +DE TS A+ MI MG K RQ K
Sbjct: 62 DGKPNEMTPRVVSLKSRLTKIFPDKN--IVYVDERFTSKMAMQSMIAMGSKKKDRQEKAG 119
Query: 182 --DAYAAVILLERYF 194
D +A I+L+ Y
Sbjct: 120 NLDKVSAAIILQSYL 134
>gi|386393769|ref|ZP_10078550.1| RNAse H-fold protein YqgF [Desulfovibrio sp. U5L]
gi|385734647|gb|EIG54845.1| RNAse H-fold protein YqgF [Desulfovibrio sp. U5L]
Length = 152
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 64/134 (47%), Gaps = 10/134 (7%)
Query: 66 LGVDLGLSRTGLALSK-----GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPK 120
L +D G +R GLA+S F +R TV + L +LL++ + ++G P
Sbjct: 5 LAIDYGQARVGLAVSDPDGRIAFALR--TVAWQTRDALFRELLDVITSQGIAAIVVGYPA 62
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
G E+ +VR RLA R + L+DE ++ EA +++ GLS A +
Sbjct: 63 RAGGDESLTGRQVRKFVARLARRT---DLPIALVDEAHSTEEAAEQLGEAGLSGPALSAR 119
Query: 181 TDAYAAVILLERYF 194
DA AA ++L RY
Sbjct: 120 VDAQAAAVILTRYL 133
>gi|269977320|ref|ZP_06184293.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1]
gi|269934623|gb|EEZ91184.1| putative Holliday junction resolvase [Mobiluncus mulieris 28-1]
Length = 153
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 46/144 (31%), Positives = 73/144 (50%), Gaps = 5/144 (3%)
Query: 63 GFSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFI-IGLP 119
G +GVD+G R G+A + P+ LK++ + EL+ L REET + +GLP
Sbjct: 4 GRLIGVDVGKVRVGIAQAYLDTTLALPVKTLKVQADGSELEELASFIREETTTAVFVGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ +G E + RS A RLA + + V L+DE +S A +++ G+S +
Sbjct: 64 RLLNGKEGEAARMARSYARRLARKISP--IPVRLIDERLSSVTAHEKLRAAGVSTREHKK 121
Query: 180 KTDAYAAVILLERYFSMSGQGTEI 203
D AA +LE+ MS GT++
Sbjct: 122 MVDQVAAQQILEQAIEMSNIGTDL 145
>gi|320109161|ref|YP_004184751.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4]
gi|319927682|gb|ADV84757.1| Holliday junction resolvase YqgF [Terriglobus saanensis SP1PR4]
Length = 157
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 39/147 (26%), Positives = 73/147 (49%), Gaps = 7/147 (4%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+G+D+G R G+A+S G +P+ L + +++ + + ++ E + GLP
Sbjct: 15 MGLDIGDRRIGVAISDGLGLTAQPVFTLHRSNPREDIRSIARLTRKHEATAIVAGLPLHM 74
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G +PQ+ K ++ A LA R G +Y DE TS A + + G + R+ D
Sbjct: 75 SGDLSPQAQKSQAFAQELAKRT---GLPLYFWDERLTSHAAHEILDVSGFGTTGRKAVID 131
Query: 183 AYAAVILLERYFSMSGQGTEIVLPKRV 209
AAV++L+ + + +G ++ P+ V
Sbjct: 132 QVAAVLILQGFLD-AQRGPTLLPPQNV 157
>gi|19746980|ref|NP_608116.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS8232]
gi|28896707|ref|NP_803057.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
SSI-1]
gi|50915141|ref|YP_061113.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10394]
gi|71904442|ref|YP_281245.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS6180]
gi|94989437|ref|YP_597538.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS9429]
gi|94993326|ref|YP_601425.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS2096]
gi|94995284|ref|YP_603382.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
MGAS10750]
gi|139474553|ref|YP_001129269.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
str. Manfredo]
gi|306826480|ref|ZP_07459791.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
ATCC 10782]
gi|417857668|ref|ZP_12502727.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
HKU QMH11M0907901]
gi|54039589|sp|P67495.1|RUVX_STRP8 RecName: Full=Putative Holliday junction resolvase
gi|62900945|sp|Q5X9I3.1|RUVX_STRP6 RecName: Full=Putative Holliday junction resolvase
gi|118597224|sp|Q1J498.1|RUVX_STRPF RecName: Full=Putative Holliday junction resolvase
gi|146325612|sp|Q1J9D0.1|RUVX_STRPB RecName: Full=Putative Holliday junction resolvase
gi|146325613|sp|Q1JJH9.1|RUVX_STRPC RecName: Full=Putative Holliday junction resolvase
gi|146325614|sp|Q48QX0.1|RUVX_STRPM RecName: Full=Putative Holliday junction resolvase
gi|167016512|sp|A2RGU5.1|RUVX_STRPG RecName: Full=Putative Holliday junction resolvase
gi|342179318|sp|P0DF52.1|RUVX_STRP3 RecName: Full=Putative Holliday junction resolvase
gi|342179319|sp|P0DF53.1|RUVX_STRPQ RecName: Full=Putative Holliday junction resolvase
gi|19749234|gb|AAL98615.1| conserved hypothetical protein [Streptococcus pyogenes MGAS8232]
gi|28811961|dbj|BAC64890.1| conserved hypothetical protein [Streptococcus pyogenes SSI-1]
gi|50904215|gb|AAT87930.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10394]
gi|71803537|gb|AAX72890.1| hypothetical protein M28_Spy1780 [Streptococcus pyogenes MGAS6180]
gi|94542945|gb|ABF32994.1| endonuclease involved in recombination [Streptococcus pyogenes
MGAS9429]
gi|94546834|gb|ABF36881.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS2096]
gi|94548792|gb|ABF38838.1| Endonuclease involved in recombination [Streptococcus pyogenes
MGAS10750]
gi|134272800|emb|CAM31077.1| putative Holliday junction resolvase [Streptococcus pyogenes str.
Manfredo]
gi|304431339|gb|EFM34337.1| crossover junction endodeoxyribonuclease [Streptococcus pyogenes
ATCC 10782]
gi|387934623|gb|EIK42736.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
HKU QMH11M0907901]
Length = 139
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 9/136 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++K+ EK E +L E+ ++ + ++F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQT 179
+ + + P+ + + + G V+ DE T+ EA +I +S+ R+
Sbjct: 64 NMNNTNGPRVDASITYGNHI---EHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 120
Query: 180 KTDAYAAVILLERYFS 195
D AA ++L+ Y +
Sbjct: 121 VIDKLAAQLILQNYLN 136
>gi|238918247|ref|YP_002931761.1| conserved hypothetical protein TIGR00250 [Edwardsiella ictaluri
93-146]
gi|259495703|sp|C5BCS0.1|RUVX_EDWI9 RecName: Full=Putative Holliday junction resolvase
gi|238867815|gb|ACR67526.1| conserved hypothetical protein TIGR00250 [Edwardsiella ictaluri
93-146]
Length = 140
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L D G G A+ + RPL K + Q +E RE + D ++GLP +
Sbjct: 7 LAFDFGTRSIGCAIGQELTGSARPLQSFKANDGVPDWQQIEKVLREWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE P + + R A RL R G ++ L DE ++ EA + G ++ + + D
Sbjct: 67 DGSEQPLTQQARKFANRLHGRF---GVQIALQDERLSTVEARAHLFAGGGYRALEKGRVD 123
Query: 183 AYAAVILLERYF 194
A +A ++LE +F
Sbjct: 124 AASAALILESWF 135
>gi|158313531|ref|YP_001506039.1| Holliday junction resolvase-like protein [Frankia sp. EAN1pec]
gi|158108936|gb|ABW11133.1| Holliday junction resolvase YqgF [Frankia sp. EAN1pec]
Length = 188
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 65/140 (46%), Gaps = 8/140 (5%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKL----RGEKLELQLLEIAQREETDEFII 116
G +GVD+G R G+A+S G P+T L+ RG +L +I + E ++
Sbjct: 29 GVRIGVDVGSVRVGVAVSDPDGLLAVPVTTLRRDVSRRGFADVDELADIVRDRHAVEVVV 88
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+ G E R A L+ R A V L+DE T+ A RM GL A
Sbjct: 89 GLPRHLSGREGEAVRLARRYAEVLSARVAP--VPVRLVDERLTTVVAHRRMAERGLRSRA 146
Query: 177 RQTKTDAYAAVILLERYFSM 196
R+ D AAV +L+ + +
Sbjct: 147 RRDLVDQEAAVQILQHHLDV 166
>gi|209560223|ref|YP_002286695.1| Holliday junction resolvase-like protein [Streptococcus pyogenes
NZ131]
gi|226695308|sp|B5XJ01.1|RUVX_STRPZ RecName: Full=Putative Holliday junction resolvase
gi|209541424|gb|ACI62000.1| Putative Holliday junction resolvase [Streptococcus pyogenes NZ131]
Length = 139
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 9/136 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++K+ EK E +L E+ ++ + ++F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKAEFGFTRLEELVKQYQVEQFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQT 179
+ + + P+ + + + G V+ DE T+ EA +I +S+ R+
Sbjct: 64 NMNNTNGPRVDASITYGSHI---EHLFGLPVHYQDERLTTVEAERMLIEQADISRGKRKK 120
Query: 180 KTDAYAAVILLERYFS 195
D AA ++L+ Y +
Sbjct: 121 VIDKLAAQLILQNYLN 136
>gi|302380637|ref|ZP_07269102.1| Holliday junction resolvase-like protein [Finegoldia magna
ACS-171-V-Col3]
gi|303233893|ref|ZP_07320542.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4]
gi|417926564|ref|ZP_12569961.1| RNAse H domain protein, YqgF family [Finegoldia magna
SY403409CC001050417]
gi|302311580|gb|EFK93596.1| Holliday junction resolvase-like protein [Finegoldia magna
ACS-171-V-Col3]
gi|302494818|gb|EFL54575.1| RNAse H domain protein, YqgF family [Finegoldia magna BVS033A4]
gi|341588932|gb|EGS32302.1| RNAse H domain protein, YqgF family [Finegoldia magna
SY403409CC001050417]
Length = 137
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 70/134 (52%), Gaps = 6/134 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKL-RGEKLE-LQLLE-IAQREETDEFIIGLPKSW 122
+G+D+G G+A+S F + +++ + R K+E ++++ I + +E + I+GLPK+
Sbjct: 5 IGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINGIIKEKEVSKIIVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+ + PQ+ KV++ L + +DE T+ A +I +S+ R+ D
Sbjct: 65 NNTIGPQAKKVKTFVKEL---RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDVID 121
Query: 183 AYAAVILLERYFSM 196
+ AA +L+ Y M
Sbjct: 122 SVAATYILQTYLDM 135
>gi|240949410|ref|ZP_04753751.1| Holliday junction resolvase-like protein [Actinobacillus minor
NM305]
gi|240296159|gb|EER46815.1| Holliday junction resolvase-like protein [Actinobacillus minor
NM305]
Length = 140
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPK 120
G +S+G +G S TG A + L K + G Q+ ++ Q + D ++GLP
Sbjct: 11 GTYSIGCAVGQSITGTA-------QGLPAFKAQDGIPDWTQIEKVIQEWQPDVLVVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + + A RL R V L DE T+ EA + + G K+ ++ K
Sbjct: 64 NMDGTEQPLTQRAKKFANRLNGRF---NLPVELQDERLTTVEAKAEIFSRGGYKALKKGK 120
Query: 181 TDAYAAVILLERYF 194
DA +A ++LE +F
Sbjct: 121 VDAISACLILESWF 134
>gi|46581473|ref|YP_012281.1| hypothetical protein DVU3070 [Desulfovibrio vulgaris str.
Hildenborough]
gi|120601357|ref|YP_965757.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4]
gi|387154681|ref|YP_005703617.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris RCH1]
gi|62900991|sp|Q726N6.1|RUVX_DESVH RecName: Full=Putative Holliday junction resolvase
gi|167012717|sp|A1VA64.1|RUVX_DESVV RecName: Full=Putative Holliday junction resolvase
gi|46450895|gb|AAS97541.1| conserved hypothetical protein [Desulfovibrio vulgaris str.
Hildenborough]
gi|120561586|gb|ABM27330.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris DP4]
gi|311235125|gb|ADP87979.1| Holliday junction resolvase YqgF [Desulfovibrio vulgaris RCH1]
Length = 142
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 6/134 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG+D G RTG+A++ G P T+ + ++LL + + E D F++GLP+
Sbjct: 4 LGIDYGQRRTGIAVTDAGGRMAFPRRTIAMTTRDAFFVELLGMVEVECPDAFVVGLPRLP 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G ET + +VR+ RL R VY + E +S EA D + + GL + D
Sbjct: 64 GGEETLTTRQVRNFVERLKRRTT---LPVYFMPEELSSFEAEDDLRDAGLRGRRLEAVVD 120
Query: 183 AYAAVILLERYFSM 196
AAV +LE + ++
Sbjct: 121 QQAAVRILESFLAV 134
>gi|288928224|ref|ZP_06422071.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str.
F0108]
gi|288331058|gb|EFC69642.1| Holliday junction resolvase [Prevotella sp. oral taxon 317 str.
F0108]
Length = 138
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/131 (32%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L VD G RTG+A++ + ++ + L LL+ +REE + ++G PK +G
Sbjct: 5 LSVDYGQKRTGIAVTDPLQIICNGLVTVSSSTLVDFLLDYTKREEVELIVVGEPKQTNGQ 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+ +VR R + A V DE TS A MI+ GL K ARQ K D
Sbjct: 65 PSENLERVRQFVARW--KKACPTIPVVYYDERFTSVLAHRAMIDGGLKKKARQDKALVDE 122
Query: 184 YAAVILLERYF 194
+A I+L+ Y
Sbjct: 123 ISATIILQSYL 133
>gi|283788529|ref|YP_003368394.1| holliday junction resolvase [Citrobacter rodentium ICC168]
gi|282951983|emb|CBG91710.1| putative holliday junction resolvase [Citrobacter rodentium ICC168]
Length = 122
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/112 (33%), Positives = 58/112 (51%), Gaps = 4/112 (3%)
Query: 84 CVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAV 142
R L +K + + L+E +E + DE I+GLP + DG+E P + + R A R+
Sbjct: 10 SARALAAIKAQDGTPDWNLIERLLKEWQPDEIIVGLPLNMDGTEQPLTARARKFANRIHG 69
Query: 143 RAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAYAAVILLERYF 194
R G V L DE ++ EA + G ++ + K D+ +AVI+LE YF
Sbjct: 70 RF---GVTVTLHDERLSTVEARSGLFEQGGYRALNKGKIDSASAVIILESYF 118
>gi|410084828|ref|ZP_11281549.1| Putative Holliday junction resolvase [Morganella morganii SC01]
gi|409768473|gb|EKN52533.1| Putative Holliday junction resolvase [Morganella morganii SC01]
Length = 140
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/131 (32%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+GV +G + TG A RPL LK R + +L+ RE + D ++GLP + D
Sbjct: 15 SIGVAVGQTITGTA-------RPLAALKAREGIPDWELIAAVFREWQPDYVVVGLPLNMD 67
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+ +N+ + A RL R G R L DE ++ EA + G ++ + K D+
Sbjct: 68 GTPQLVTNQAKKFANRLHGR---FGIRAELHDERLSTVEARASLFADGGYRALGKDKVDS 124
Query: 184 YAAVILLERYF 194
+AVI+LE +F
Sbjct: 125 ASAVIILESWF 135
>gi|114799411|ref|YP_760995.1| hypothetical protein HNE_2300 [Hyphomonas neptunium ATCC 15444]
gi|123128643|sp|Q0BZU8.1|RUVX_HYPNA RecName: Full=Putative Holliday junction resolvase
gi|114739585|gb|ABI77710.1| conserved hypothetical protein TIGR00250 [Hyphomonas neptunium ATCC
15444]
Length = 151
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 59 LWRGGFSLGVDLGLSRTGLALSKGF--CVRPL-TVLKLRGEKLELQLLEIAQREETDEFI 115
L R G LG+D G + G+A + P+ T+LK + +LL I I
Sbjct: 9 LPREGVLLGIDPGTATIGVAATDRIRMMASPVETILKKKLAPSLERLLHIYDERAAVGLI 68
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
+GLP + DGS P++ VR++ L R V DE +SAEA D M G ++
Sbjct: 69 VGLPLNVDGSMGPRAQSVRTLVSSLL---KVRDLPVTFQDERYSSAEAGDIMRAAGATRR 125
Query: 176 ARQTKTDAYAAVILLERYFS 195
R+ + DA AA ++L+ S
Sbjct: 126 NREARIDASAAAVILQDALS 145
>gi|111224622|ref|YP_715416.1| Holliday junction resolvase-like protein [Frankia alni ACN14a]
gi|111152154|emb|CAJ63884.1| Conserved hypothetical protein. Putative Holliday junction
resolvase [Frankia alni ACN14a]
Length = 205
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 65/137 (47%), Gaps = 8/137 (5%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVL---KLRGEKLELQLLEIAQREETDEF 114
R G +GVD+G R G+A S G P+T L K +E QL++I + + E
Sbjct: 26 LRRGVRIGVDVGSVRVGVAASDPGGVLAVPVTTLARDKRHNADIE-QLVQIVRDRQAVEV 84
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSK 174
++GLP+ G E VR LA R A V +DE T+ A RM G+
Sbjct: 85 VVGLPRQMSGQEGRAVQLVRQYVEVLAERIAP--VPVRFVDERLTTVAAHRRMAERGVRS 142
Query: 175 SARQTKTDAYAAVILLE 191
AR++ D AAV +L+
Sbjct: 143 RARRSLVDQEAAVQILQ 159
>gi|406928602|gb|EKD64378.1| hypothetical protein ACD_51C00016G0004 [uncultured bacterium]
Length = 136
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 67/132 (50%), Gaps = 8/132 (6%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLT--VLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
LG+D G RTG+A+S G T + E+ L+ +E I + E + +IGLP +
Sbjct: 5 LGLDYGKRRTGVAISDGTHSIAFTRNTISFNKEEAVLKEIEKICKIENVSKIVIGLPCNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G TPQ+ + + A RL ER + + DE +S +A +++ K + ++ D
Sbjct: 65 SGEYTPQTEETLAFAERLKKHTGER--EIEMFDERLSSLQAEKALVD---KKMKKYSEID 119
Query: 183 AYAAVILLERYF 194
+ AA I+L+ Y
Sbjct: 120 SIAAQIILQAYL 131
>gi|225012716|ref|ZP_03703151.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A]
gi|225003249|gb|EEG41224.1| Holliday junction resolvase YqgF [Flavobacteria bacterium MS024-2A]
Length = 140
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 64/143 (44%), Gaps = 22/143 (15%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVL-----KLRGEKLELQLLEIAQREETDEFIIG 117
G +G+D G RTGLA C PL ++ L ++ L + + EE D F++G
Sbjct: 2 GSLIGIDFGTKRTGLA-----CTDPLKIIASGLKNLSTPEVIPFLKKYCEMEEVDTFVVG 56
Query: 118 LPKSWDGS----ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLS 173
P DG+ E N ++ + + ++ ER DE TS A MIN GL
Sbjct: 57 KPLQKDGTPAEVEVDIKNFIKKLQNQFPSQSIER------YDERYTSKLAFQSMINGGLK 110
Query: 174 KSARQTK--TDAYAAVILLERYF 194
K R K D +A ++L+ Y
Sbjct: 111 KKQRADKGMIDQVSATLILQSYL 133
>gi|116510965|ref|YP_808181.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris SK11]
gi|385837142|ref|YP_005874772.1| Putative Holliday junction resolvase [Lactococcus lactis subsp.
cremoris A76]
gi|414073438|ref|YP_006998655.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris UC509.9]
gi|123125957|sp|Q032W3.1|RUVX_LACLS RecName: Full=Putative Holliday junction resolvase
gi|116106619|gb|ABJ71759.1| RNase H-like ribonuclease [Lactococcus lactis subsp. cremoris SK11]
gi|358748370|gb|AEU39349.1| Putative Holliday junction resolvase [Lactococcus lactis subsp.
cremoris A76]
gi|413973358|gb|AFW90822.1| Holliday junction resolvase-like protein [Lactococcus lactis subsp.
cremoris UC509.9]
Length = 143
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+++S G +P+ +K+ E EL +L + + + ++ ++GLPK
Sbjct: 6 LGLDVGTKTVGVSVSDLLGMTAQPVETIKIDSEAGELGFDRLAVLIKEYKPEKVVLGLPK 65
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+G E ++ R +LA E V DE T+A+A +I+ G+ + R+
Sbjct: 66 HMNGDEGIRAEASRDYGTKLA---NEFSLEVAYQDERLTTAQAEKVLIDGGVRRKDRKKS 122
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 123 IDKLAAVLILQNYL 136
>gi|440286222|ref|YP_007338987.1| RNAse H-fold protein YqgF [Enterobacteriaceae bacterium strain FGI
57]
gi|440045744|gb|AGB76802.1| RNAse H-fold protein YqgF [Enterobacteriaceae bacterium strain FGI
57]
Length = 140
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+GV +G TG A RPL LK + + L+E +E + I+GLP + D
Sbjct: 14 SIGVAVGQQITGTA-------RPLNALKAQNGTPDWTLIEKLLKEWQPALVIVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
GSE P + + R+ A ++ R G + L DE ++ EA + G ++ + D+
Sbjct: 67 GSEQPLTARARNFANKIHGR---FGVAIKLHDERLSTVEARAGLFEHGGFRALDKGSVDS 123
Query: 184 YAAVILLERYFSMS 197
+AV++LE YF S
Sbjct: 124 ASAVVILESYFEQS 137
>gi|326386640|ref|ZP_08208262.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens
DSM 19370]
gi|326208955|gb|EGD59750.1| Holliday junction resolvase YqgF [Novosphingobium nitrogenifigens
DSM 19370]
Length = 155
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 70/139 (50%), Gaps = 7/139 (5%)
Query: 56 KDSLWRGGFSLGVDLGLSRTGLALSKG---FCVRPLTVLKLRGEKLELQLLEIAQREETD 112
+ +L GG +G+D G G+AL F T+ + + + + +++ I +
Sbjct: 10 RAALSEGGVLMGLDPGTKTIGIALCDAGWRFASPSHTLNRRKFAQDKAEIVGIIAQRSVR 69
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGL 172
+IGLP + DGSE+P+S R++A L A+ L DE T+ A MI +
Sbjct: 70 GIVIGLPLNMDGSESPRSQAARAMARNL----ADLALPTLLWDERWTTQAAERAMIAQDM 125
Query: 173 SKSARQTKTDAYAAVILLE 191
S++ R + DA+AA ++L+
Sbjct: 126 SRAKRAERIDAHAAALILQ 144
>gi|431794397|ref|YP_007221302.1| RNAse H-fold protein YqgF [Desulfitobacterium dichloroeliminans LMG
P-21439]
gi|430784623|gb|AGA69906.1| RNAse H-fold protein YqgF [Desulfitobacterium dichloroeliminans LMG
P-21439]
Length = 138
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSWDG 124
LG+D G G+A+S + + +R K EL+ L +I E DE I+G PK+ +G
Sbjct: 4 LGLDFGERTIGVAVSDALLLTAQGIKTIRRSKKELEELRQIIHDYEVDEVILGYPKNMNG 63
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
+ P++ A + E G V L DE ++ A ++ LS++ R+ D
Sbjct: 64 TLGPRATMTEEFA---EILKGEYGLPVLLWDERLSTIGAQRSLLEADLSRAKRKKVIDKM 120
Query: 185 AAVILLERYF 194
AAV +L+ Y
Sbjct: 121 AAVFILQGYL 130
>gi|392947071|ref|ZP_10312713.1| RNAse H-fold protein YqgF [Frankia sp. QA3]
gi|392290365|gb|EIV96389.1| RNAse H-fold protein YqgF [Frankia sp. QA3]
Length = 169
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 46/136 (33%), Positives = 65/136 (47%), Gaps = 8/136 (5%)
Query: 61 RGGFSLGVDLGLSRTGLALSK--GFCVRPLTVL---KLRGEKLELQLLEIAQREETDEFI 115
R G +GVD+G R G+A S G P+T L K +E QL++I + + E +
Sbjct: 11 RPGVRIGVDVGSVRVGIAASDPGGVLAVPVTTLTRDKRHNADIE-QLVQIVRDRQAVEVV 69
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
+GLP+ G E VR LA R A V +DE T+ A RM G+
Sbjct: 70 VGLPRQMSGQEGRAVLLVRQYVEVLAERIAP--VPVRFVDERLTTVAAHRRMAERGVRSR 127
Query: 176 ARQTKTDAYAAVILLE 191
AR++ D AAV +L+
Sbjct: 128 ARRSLVDQEAAVQILQ 143
>gi|290476318|ref|YP_003469222.1| Holliday junction resolvase [Xenorhabdus bovienii SS-2004]
gi|289175655|emb|CBJ82458.1| putative Holliday junction resolvase [Xenorhabdus bovienii SS-2004]
Length = 141
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+G +G TG A R L+ K + +L+E +E + D I+GLP
Sbjct: 12 GTHSIGTAIGQEITGTA-------RALSAFKAKEGSPSWELIEKLLKEWQPDLIIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E + + R A RL R G +V L DE T+ EA + + G K+ + K
Sbjct: 65 NMDGTEQLVTAQARKFANRLHGRF---GVQVELHDERLTTIEARSHLFDHGGYKALDKGK 121
Query: 181 TDAYAAVILLERYF 194
D+ +AV++LE +F
Sbjct: 122 VDSVSAVVILESWF 135
>gi|453053381|gb|EMF00847.1| Holliday junction resolvase-like protein [Streptomyces mobaraensis
NBRC 13819 = DSM 40847]
Length = 154
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G + VD+G +R G+A G P+ + R + +L + E E ++
Sbjct: 1 MRRGRRIAVDVGDARIGVASCDPDGILATPVETVPGRDIPQAHKRLAALVAEYEPIEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR+ A +A R A V L+DE T+ A + G+S
Sbjct: 61 GLPRSLKGGEGPAAAKVRTFAKEMARRVAP--VPVRLVDERMTTVTAAQGLRASGVSSKK 118
Query: 177 RQTKTDAYAAVILLERYFSM-------SGQGTEIVL 205
++ D AAVI+L+ G+ E+V+
Sbjct: 119 GRSVVDQAAAVIILQNALETERTSGRPPGEPVEVVI 154
>gi|257465328|ref|ZP_05629699.1| Holliday junction resolvase-like protein [Actinobacillus minor 202]
gi|257450988|gb|EEV25031.1| Holliday junction resolvase-like protein [Actinobacillus minor 202]
Length = 140
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPK 120
G +S+G +G S TG A + L K + G Q+ ++ Q + D ++GLP
Sbjct: 11 GTYSIGCAVGQSITGTA-------QGLPAFKAQDGIPDWAQIEKVIQEWQPDVLVVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + + A RL R V L DE T+ EA + + G K+ ++ K
Sbjct: 64 NMDGTEQPLTQRAKKFANRLNGR---FNLPVELQDERLTTVEAKAEIFSRGGYKALKKGK 120
Query: 181 TDAYAAVILLERYF 194
DA +A ++LE +F
Sbjct: 121 VDAISACLILESWF 134
>gi|327402963|ref|YP_004343801.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823]
gi|327318471|gb|AEA42963.1| Holliday junction resolvase [Fluviicola taffensis DSM 16823]
Length = 142
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 4/138 (2%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D GL RTGLALS + + + + L +L ++ +E+ E +IG PK D S
Sbjct: 5 LAIDFGLKRTGLALSDESKIFAFGLQTIDSKTLMDELKKLVSKEKITEIVIGEPKRLDTS 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
++ + VR + + AV+ V +LDE TS A + GL K R+ K D
Sbjct: 65 DSHITQNVRLL--KEAVQKVFPEVLVCMLDERFTSKMASAVIAQSGLKKKDREQKGLIDT 122
Query: 184 YAAVILLERYFSMSGQGT 201
+A I+L+ Y G+
Sbjct: 123 VSATIILQDYLQTRLNGS 140
>gi|407693916|ref|YP_006818704.1| holliday junction resolvase [Alcanivorax dieselolei B5]
gi|407251254|gb|AFT68361.1| Putative Holliday junction resolvase [Alcanivorax dieselolei B5]
Length = 135
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 45/144 (31%), Positives = 68/144 (47%), Gaps = 15/144 (10%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLPKSW 122
L D G + G+A PL L + E+ + Q + + E E ++ GLP +
Sbjct: 4 LAFDYGTRKIGVASGNTLIGTASPLPPLSCKNEQPDWQQMAVLLDEWRPELVVVGLPLNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE+ S + R A R+ R G +VY++DE ++ EA +R G K D
Sbjct: 64 DGSESHSSERARKFARRILGRF---GLKVYMVDERLSTREARERTATRG-----PDPKVD 115
Query: 183 AYAAVILLERYFSMSGQGTEIVLP 206
+ AAV++ E Y + GTE V P
Sbjct: 116 SMAAVVIAEGYLN----GTEPVAP 135
>gi|310643513|ref|YP_003948271.1| holliday junction resolvase [Paenibacillus polymyxa SC2]
gi|309248463|gb|ADO58030.1| Holliday junction resolvase-like protein [Paenibacillus polymyxa
SC2]
gi|392304268|emb|CCI70631.1| putative Holliday junction resolvase [Paenibacillus polymyxa M1]
Length = 138
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+D G R G+A+S G+ + L V++ RG+ E ++ + + E E ++GLPK+
Sbjct: 4 MGLDYGDRRIGVAVSDAFGWTAQGLVVIERRGDDSEFGKIANLVREHEIGEVVVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P+ A RL G V+L DE T+ A ++ +S+ R+ D
Sbjct: 64 NGTVGPRGEICIEFANRL---KELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVD 120
Query: 183 AYAAVILLERYF 194
AA ++L+ Y
Sbjct: 121 KLAASLILQNYL 132
>gi|254995134|ref|ZP_05277324.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Mississippi]
gi|255003304|ref|ZP_05278268.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Puerto Rico]
gi|255004430|ref|ZP_05279231.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Virginia]
gi|62900915|sp|Q5PAA6.2|RUVX_ANAMM RecName: Full=Putative Holliday junction resolvase
Length = 157
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
LG+D G + GLA+S G P +V R + +L +L I +RE ++GLP
Sbjct: 20 LGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELNAILKREGICAAVVGLPLQL 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG E VRS +L ++ G VYL DE T+A A ++GL + A Q D
Sbjct: 80 DGMEGEMCAVVRSFVQKLIKKS---GVYVYLHDERFTTAMASRTTESLGLRRKASQKVDD 136
Query: 183 AYAAVILLERYFSMS 197
+A ++L++ M+
Sbjct: 137 KISAALILQQVLDMA 151
>gi|402309334|ref|ZP_10828329.1| RNAse H domain protein, YqgF family [Eubacterium sp. AS15]
gi|400372829|gb|EJP25767.1| RNAse H domain protein, YqgF family [Eubacterium sp. AS15]
Length = 142
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/139 (24%), Positives = 69/139 (49%), Gaps = 5/139 (3%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G + G+A+S G +P ++ + + ++Q +L++ + E ++GLPK
Sbjct: 5 LGLDIGKQKIGIAMSDLLGMTAQPKATIRSKNLEEQMQKILDLIKENSIKEVVVGLPKDI 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G + Q+ +S +L ++ ++ +DE TS A+ + +M + K + D
Sbjct: 65 NGGDGEQALWTKSFVEKLCLK--NENIKIIYIDERYTSKLALKNLSHMSMKKVKDKELID 122
Query: 183 AYAAVILLERYFSMSGQGT 201
+ AA +LE Y G
Sbjct: 123 SLAAASILETYLRQKENGV 141
>gi|188534953|ref|YP_001908750.1| Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
gi|188029995|emb|CAO97879.1| Putative Holliday junction resolvase [Erwinia tasmaniensis Et1/99]
Length = 140
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RPL LK + + +E +E + + ++GLP
Sbjct: 12 GTKSIGVAIGQRLTGTA-------RPLNALKAQDGIPDWNRIEALLKEWQPERVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DGSE P + + R A RL R G +V L DE ++ EA + G ++ +
Sbjct: 65 NMDGSEQPLTARARKFANRLHGRF---GVQVDLHDERLSTVEARAELFERGGFRALSKGN 121
Query: 181 TDAYAAVILLERYF 194
D+ +AVI+LE +F
Sbjct: 122 VDSLSAVIILESWF 135
>gi|154500404|ref|ZP_02038442.1| hypothetical protein BACCAP_04071 [Bacteroides capillosus ATCC
29799]
gi|150270909|gb|EDM98192.1| RNAse H domain protein, YqgF family [Pseudoflavonifractor
capillosus ATCC 29799]
Length = 139
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G +RTG+A+S G TV+ R E + ++ + + +E ++G P++
Sbjct: 4 MAIDYGDARTGIAISDPTGLLAGYTTVIHSRKSEVVAEEIARLVKEHGVEELVMGFPRNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P++ R+ A ++ G L DE RT+ EA + + G + D
Sbjct: 64 DGTEGPRAELYRAFAQQV---GQVTGLTPVLWDERRTTVEAHNILHASGKRMKQHKKTVD 120
Query: 183 AYAAVILLERYFS 195
A AA ++LE Y +
Sbjct: 121 AVAATLILEGYLT 133
>gi|258511991|ref|YP_003185425.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
gi|257478717|gb|ACV59036.1| Holliday junction resolvase YqgF [Alicyclobacillus acidocaldarius
subsp. acidocaldarius DSM 446]
Length = 144
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+ +D G R G+ALS G +P V++ + ++ ++ ++A+REE ++G P
Sbjct: 1 MAIDFGERRIGVALSDPMGLIAQPYGVIERQSDRQAADEVADLARREEVGRIVVGRPLHM 60
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G + +++ A LA R G V L DE T+ A +I + + R+ D
Sbjct: 61 SGQPSEMTSRAEKFARMLAART---GLPVDLYDERLTTVSAERILIEQNVRRRERRATVD 117
Query: 183 AYAAVILLERYF 194
A AA +LLE Y
Sbjct: 118 AAAAQVLLEDYL 129
>gi|299473370|emb|CBN77768.1| conserved unknown protein [Ectocarpus siliculosus]
Length = 296
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 47/138 (34%), Positives = 71/138 (51%), Gaps = 5/138 (3%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL--QLLEIAQREETDEFIIGLPKSW 122
+L VD G R GLA+ G R + + G LE+ Q+L A+ E + ++GLP
Sbjct: 80 TLCVDYGTRRVGLAIGVGISPRAVPGVTNVGSDLEVARQVLVRARGEGIRDIVVGLPLER 139
Query: 123 DGSETPQSNKVRSVAGRLA-VRAAERGWR-VYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+G+ET VR A LA V AA R V+L DE +SA+A + G S++ +
Sbjct: 140 NGTETEMCEIVRGFASVLADVGAASRPTAGVFLWDERFSSAQAAAMLDPYGGGMSSK-VE 198
Query: 181 TDAYAAVILLERYFSMSG 198
D+ AA ++L+ +F G
Sbjct: 199 IDSLAASLILKHFFEEGG 216
>gi|123443623|ref|YP_001007595.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. enterocolitica 8081]
gi|332162807|ref|YP_004299384.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|386309774|ref|YP_006005830.1| putative Holliday junction resolvase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|418240146|ref|ZP_12866688.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. palearctica PhRBD_Ye1]
gi|420259856|ref|ZP_14762549.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. enterocolitica WA-314]
gi|433551137|ref|ZP_20507180.1| Putative Holliday junction resolvase YggF [Yersinia enterocolitica
IP 10393]
gi|167016517|sp|A1JPT6.1|RUVX_YERE8 RecName: Full=Putative Holliday junction resolvase
gi|122090584|emb|CAL13453.1| conserved hypothetical protein [Yersinia enterocolitica subsp.
enterocolitica 8081]
gi|318604352|emb|CBY25850.1| putative Holliday junction resolvase [Yersinia enterocolitica
subsp. palearctica Y11]
gi|325667037|gb|ADZ43681.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. palearctica 105.5R(r)]
gi|330858997|emb|CBX69355.1| putative Holliday junction resolvase [Yersinia enterocolitica
W22703]
gi|351780406|gb|EHB22480.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. palearctica PhRBD_Ye1]
gi|404512597|gb|EKA26439.1| Holliday junction resolvase-like protein [Yersinia enterocolitica
subsp. enterocolitica WA-314]
gi|431788236|emb|CCO70220.1| Putative Holliday junction resolvase YggF [Yersinia enterocolitica
IP 10393]
Length = 140
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A R LT K + + Q +E +E + D ++GLP
Sbjct: 12 GTKSIGVAIGQEVTGTA-------RALTSFKAQDGTPDWQKVEKLLKEWQPDLVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A RL R G ++ L DE ++ EA + + G ++ +
Sbjct: 65 NMDGTEQPLTARARRFANRLHGRF---GVQIALQDERLSTVEARANLFDSGGYRALDKGS 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|359787571|ref|ZP_09290608.1| Holliday junction resolvase YqgF [Halomonas sp. GFAJ-1]
gi|359295190|gb|EHK59475.1| Holliday junction resolvase YqgF [Halomonas sp. GFAJ-1]
Length = 151
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKSW 122
LG D G R G+A++ R L+ L R + L+ + + + D F++GLP +
Sbjct: 10 LGFDFGTRRIGVAVANELLKSARELSPLTARDGIPDWNLVTRLVEEWQPDLFVVGLPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E+ S + R A RL R G + ++DE ++ EA G + R+ D
Sbjct: 70 DGTESAMSTRARKFANRLHGRF---GKPIEMVDERGSTREAKQIAHAAGHRGNYREESVD 126
Query: 183 AYAAVILLERYFS 195
AAV++LE +F+
Sbjct: 127 GIAAVLILEGWFA 139
>gi|269137634|ref|YP_003294334.1| hypothetical protein ETAE_0276 [Edwardsiella tarda EIB202]
gi|387866386|ref|YP_005697855.1| Putative Holliday junction resolvase [Edwardsiella tarda FL6-60]
gi|267983294|gb|ACY83123.1| conserved hypothetical protein [Edwardsiella tarda EIB202]
gi|304557699|gb|ADM40363.1| Putative Holliday junction resolvase [Edwardsiella tarda FL6-60]
Length = 140
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L D G G A+ + RPL K + Q +E RE + D ++GLP +
Sbjct: 7 LAFDFGTRSIGCAIGQELTGSARPLQSFKANDGAPDWQQIEKVLREWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE P + R A RL R G ++ L DE ++ EA + G ++ + + D
Sbjct: 67 DGSEQPLTQMARKFANRLHGRF---GVQIALQDERLSTVEARAHLFAGGGYRALEKGRVD 123
Query: 183 AYAAVILLERYF 194
A +A ++LE +F
Sbjct: 124 AASAALILESWF 135
>gi|146312992|ref|YP_001178066.1| Holliday junction resolvase-like protein [Enterobacter sp. 638]
gi|167012721|sp|A4WE85.1|RUVX_ENT38 RecName: Full=Putative Holliday junction resolvase
gi|145319868|gb|ABP62015.1| Holliday junction resolvase YqgF [Enterobacter sp. 638]
Length = 138
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 41/131 (31%), Positives = 67/131 (51%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+GV +G TG A RPLT +K + + L+E +E + + I+GLP + D
Sbjct: 14 SIGVAIGQRITGTA-------RPLTAIKAQDGTPDWTLIERLLKEWQPEAVIVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E P + + R A ++ R G V L DE ++ EA + G ++ + D+
Sbjct: 67 GTEQPLTARARKFANKIHGRF---GAVVKLHDERLSTVEARAGLFEHGGFRALNKGSVDS 123
Query: 184 YAAVILLERYF 194
+AVI+LE +F
Sbjct: 124 ASAVIILESFF 134
>gi|212557838|gb|ACJ30292.1| Holliday junction resolvase, putative [Shewanella piezotolerans
WP3]
Length = 140
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLK-LRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + RPL +K + G ++ I + D ++GLP +
Sbjct: 7 LGFDYGTKSIGIAIGQQLTASARPLLSIKAVDGIPKWEEIGAIITEWKPDLIVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + + RL R G +V DE T+A+A R+ MG K+ + + D
Sbjct: 67 DGTEQDITLRAKKFGNRLNGRF---GVKVVTQDERLTTADAKARLFEMGGYKALTKGQVD 123
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 124 AMSAVLIIESYF 135
>gi|422009898|ref|ZP_16356880.1| Holliday junction resolvase-like protein [Providencia rettgeri
Dmel1]
gi|414092071|gb|EKT53750.1| Holliday junction resolvase-like protein [Providencia rettgeri
Dmel1]
Length = 139
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLPK 120
G S+GV +G TG A RPLT LK + + Q +E +E + +I GLP
Sbjct: 12 GTKSIGVAVGQEITGTA-------RPLTSLKASDGRPDWQQIEKLLKEWQPQLVIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E +++ R+ A R+ R G +V L DE ++ EA + G ++ + K
Sbjct: 65 NMDGTEQLVTSQARNFANRIHGRF---GVKVELHDERLSTVEAKAGLFEQGGYRALSKGK 121
Query: 181 TDAYAAVILLERYF 194
D+ +AV++LE +F
Sbjct: 122 VDSASAVVILESWF 135
>gi|253574901|ref|ZP_04852241.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
gi|251845947|gb|EES73955.1| conserved hypothetical protein [Paenibacillus sp. oral taxon 786
str. D14]
Length = 138
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+G+D G R G+A+S G+ + L ++ R E E + + E+ ++ E +E ++GLPK+
Sbjct: 4 MGLDYGDRRIGVAVSDSLGWTAQGLETIERRKEGSEFERIAELVKQHEVEEIVVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P+ + A L A+ V+L DE T+ A +++ +S+ R+ D
Sbjct: 64 NGTIGPRGEICMAFAEDL---RAKLNLPVHLWDERLTTVSAQRTLLDADVSRKKRKGVVD 120
Query: 183 AYAAVILLERYF 194
AA ++L+ Y
Sbjct: 121 KMAASLILQNYL 132
>gi|315604257|ref|ZP_07879323.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str.
F0310]
gi|315313963|gb|EFU62014.1| Holliday junction resolvase [Actinomyces sp. oral taxon 180 str.
F0310]
Length = 162
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 48/154 (31%), Positives = 73/154 (47%), Gaps = 10/154 (6%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFII 116
R G +GVD+G R G++ G P+ L + +L+ LE I + + E I+
Sbjct: 3 LRRGVRIGVDVGTVRVGVSRCDPDGILTMPVETLLRASDSADLRRLEGIVRAHDALEVIV 62
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+ G E + R A RL RV L+DE +S +A R+ G+ +
Sbjct: 63 GLPRHLRGGEGVSAKGARKYARRLKTLIPS--VRVALVDERLSSNQAHARLRASGVPEHE 120
Query: 177 RQTKTDAYAAVILLERYFS---MSGQ--GTEIVL 205
++ D AA I+LE+ MSG+ G EI+L
Sbjct: 121 HRSVIDQVAAQIILEQALELERMSGRAPGEEIIL 154
>gi|268593081|ref|ZP_06127302.1| putative Holliday junction resolvase [Providencia rettgeri DSM
1131]
gi|291311350|gb|EFE51803.1| putative Holliday junction resolvase [Providencia rettgeri DSM
1131]
Length = 139
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 70/134 (52%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLPK 120
G S+GV +G TG A RPLT LK + + Q +E +E + +I GLP
Sbjct: 12 GTKSIGVAVGQEITGTA-------RPLTSLKASDGRPDWQQIEKLLKEWQPQLVIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E +++ R+ A R+ R G +V L DE ++ EA + G ++ + K
Sbjct: 65 NMDGTEQLVTSQARNFANRIHGRF---GVKVELHDERLSTVEAKAGLFEQGGYRALSKGK 121
Query: 181 TDAYAAVILLERYF 194
D+ +AV++LE +F
Sbjct: 122 VDSASAVVILESWF 135
>gi|113477781|ref|YP_723842.1| Holliday junction resolvase-like protein [Trichodesmium erythraeum
IMS101]
gi|110168829|gb|ABG53369.1| Holliday junction resolvase YqgF [Trichodesmium erythraeum IMS101]
Length = 149
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALSKG---FCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKS 121
+LG+D+G+ R G+A G +T+ + EK QL +I Q + I+GLP S
Sbjct: 8 ALGLDVGIKRMGVAGCDGTGLIATGIMTIKRASFEKDVFQLQKIVQERQVQVLIVGLPYS 67
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
+GS Q+ KV+ A RL + G + +DE TS +A + + +S S +
Sbjct: 68 MNGSIGFQAKKVQRYAQRL---SQTLGLPLEYVDERLTSVQAEEMLKAANISPSQNKALI 124
Query: 182 DAYAAVILLERYF 194
D AA ++L+++
Sbjct: 125 DRKAAALILQQWL 137
>gi|242237995|ref|YP_002986176.1| Holliday junction resolvase-like protein [Dickeya dadantii Ech703]
gi|242130052|gb|ACS84354.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech703]
Length = 139
Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RPL LK + + Q +E E + D I+GLP
Sbjct: 12 GTRSIGVAIGQEITGTA-------RPLLSLKAQDGTPDWQKIEALLNEWQPDLVIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A RL R G + L DE ++ EA + G ++ +
Sbjct: 65 NMDGTEQPITARARKFAQRLHGRF---GVAIQLHDERLSTVEARADLFERGGFRALDKGS 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|253690074|ref|YP_003019264.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp.
carotovorum PC1]
gi|259495709|sp|C6DFI9.1|RUVX_PECCP RecName: Full=Putative Holliday junction resolvase
gi|251756652|gb|ACT14728.1| Holliday junction resolvase YqgF [Pectobacterium carotovorum subsp.
carotovorum PC1]
Length = 139
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RPLT K + + Q +E E + D ++GLP
Sbjct: 12 GTKSIGVAIGQEITGTA-------RPLTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A RL R G + L DE ++ EA + G K+ +
Sbjct: 65 NMDGTEQPLTARARKFANRLHGRF---GVAIALHDERLSTVEARADLFERGGFKALDKGS 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|357633634|ref|ZP_09131512.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B]
gi|357582188|gb|EHJ47521.1| Holliday junction resolvase YqgF [Desulfovibrio sp. FW1012B]
Length = 152
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSW 122
L +D G +R GLA+S +G P + + + L +LL++ + ++G P
Sbjct: 5 LAIDYGQARVGLAVSDPEGRMAFPFATVAWQTRDALFRELLDVITSQGIAAIVVGYPARA 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G E+ +VR RL+ R + L+DE ++ EA +++ GLS A + D
Sbjct: 65 GGDESLTGRQVRKFVARLSRRT---DLPIVLVDEAHSTEEAAEQLREAGLSGPALSARVD 121
Query: 183 AYAAVILLERYF 194
A AA ++L RY
Sbjct: 122 AQAAAVILTRYL 133
>gi|56416955|ref|YP_154029.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries]
gi|222475321|ref|YP_002563738.1| Holliday junction resolvase (YqgF) [Anaplasma marginale str.
Florida]
gi|56388187|gb|AAV86774.1| hypothetical protein AM859 [Anaplasma marginale str. St. Maries]
gi|222419459|gb|ACM49482.1| Putative Holliday junction resolvase (YqgF) [Anaplasma marginale
str. Florida]
Length = 164
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 67/135 (49%), Gaps = 6/135 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
LG+D G + GLA+S G P +V R + +L +L I +RE ++GLP
Sbjct: 27 LGLDFGEKKFGLAVSDSTGTIAMPHSVYLRRNVRQDLGELNAILKREGICAAVVGLPLQL 86
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG E VRS +L ++ G VYL DE T+A A ++GL + A Q D
Sbjct: 87 DGMEGEMCAVVRSFVQKLIKKS---GVYVYLHDERFTTAMASRTTESLGLRRKASQKVDD 143
Query: 183 AYAAVILLERYFSMS 197
+A ++L++ M+
Sbjct: 144 KISAALILQQVLDMA 158
>gi|402834027|ref|ZP_10882634.1| RNAse H domain protein, YqgF family [Selenomonas sp. CM52]
gi|402279096|gb|EJU28139.1| RNAse H domain protein, YqgF family [Selenomonas sp. CM52]
Length = 149
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 69/136 (50%), Gaps = 5/136 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLE---LQLLEIAQREETDEFIIGLPKSW 122
L +D+G G+A S + V +R + + +L E+ + ETD FI+GLPK+
Sbjct: 6 LALDVGDRTIGVAASDALGLTAQGVETIRRKSWDKDFARLKELMEIYETDTFIVGLPKNM 65
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G++ + + VR A RL + +G +V DE ++ A +I +S++ R+ D
Sbjct: 66 NGTQGERCDIVRDFAQRLQKKF--KGSQVVFWDERLSTVAAERSLIAADVSRAKRRKVID 123
Query: 183 AYAAVILLERYFSMSG 198
AAV +L+ Y G
Sbjct: 124 KMAAVFILQGYLDNLG 139
>gi|399888355|ref|ZP_10774232.1| Holliday junction resolvase-like protein [Clostridium arbusti
SL206]
Length = 135
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S G+ + +T ++ + E ++ +L+++ + D + GLPK+
Sbjct: 4 LGLDIGDRTIGVAVSDPLGYTAQGITTIRRKNESKDIDELIKLCKEYNVDTIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS K V G + + + + DE T+ A M+ LS++ R+ D
Sbjct: 64 NGTIGPQSEK---VLGFCEILKTKIDIPIKMWDERLTTVAAERAMLEADLSRAKRKKIVD 120
Query: 183 AYAAVILLERYF 194
AA +L+ Y
Sbjct: 121 KMAATYILQGYL 132
>gi|308070325|ref|YP_003871930.1| Holliday junction resolvase [Paenibacillus polymyxa E681]
gi|305859604|gb|ADM71392.1| Putative Holliday junction resolvase [Paenibacillus polymyxa E681]
Length = 138
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+D G R G+A+S G+ + L V++ RG+ E ++ + + E E ++GLPK+
Sbjct: 4 MGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGDDSEFGKIANLVRDNEVGEIVVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P+ A RL G V+L DE T+ A ++ +S+ R+ D
Sbjct: 64 NGTVGPRGEICIEFANRL---KELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVD 120
Query: 183 AYAAVILLERYF 194
AA ++L+ Y
Sbjct: 121 KLAASLILQNYL 132
>gi|440780838|ref|ZP_20959309.1| Holliday junction resolvase-like protein [Clostridium pasteurianum
DSM 525]
gi|440221426|gb|ELP60631.1| Holliday junction resolvase-like protein [Clostridium pasteurianum
DSM 525]
Length = 135
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S G+ + +T ++ + E+ +++ L+++ ++ + I GLPK+
Sbjct: 4 LGLDIGDRTIGVAVSDPLGYTAQGITTIRRKNEEKDIEELIKLCKQYNVETIISGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV L + + + DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTMGPQSEKVLQFCEILKEKI---DIPIKMWDERLTTVAAHKAMLEADLSRSKRKKIVD 120
Query: 183 AYAAVILLERYF 194
AA +L+ Y
Sbjct: 121 KIAATYILQGYL 132
>gi|367471171|ref|ZP_09470827.1| Putative Holliday junction resolvase [Patulibacter sp. I11]
gi|365813777|gb|EHN09019.1| Putative Holliday junction resolvase [Patulibacter sp. I11]
Length = 130
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 66/138 (47%), Gaps = 13/138 (9%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
+ +D G +RTG+ALS G PL ++ G + + L E + DE ++GLP
Sbjct: 1 MALDHGAARTGVALSDPTGTIATPLPAIERVGSRRGRRALLRLIDERQVDEIVVGLPIGL 60
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGW--RVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
G +T Q+ + R+ AG LA AE G V+L DE T+ M R +
Sbjct: 61 GGHDTDQTREARAFAGWLADALAEAGQPRPVHLYDERFTT--------RMAQQSGGRDSD 112
Query: 181 TDAYAAVILLERYFSMSG 198
D+ AA +LLE + +G
Sbjct: 113 EDSRAAAVLLEEWLRRAG 130
>gi|114564013|ref|YP_751527.1| Holliday junction resolvase-like protein [Shewanella frigidimarina
NCIMB 400]
gi|114335306|gb|ABI72688.1| Holliday junction resolvase YqgF [Shewanella frigidimarina NCIMB
400]
Length = 139
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLR---GEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + +L ++ G + ++ + + D ++GLP +
Sbjct: 7 LGFDYGTKSIGVAIGQAITASATPLLSIKAVDGIPNWDDIDKLLKEWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + R A R+ R G ++ DE T+A+A R+ +G K+ + + D
Sbjct: 67 DGTEQEMTQRARKFANRINGRF---GVKIATQDERLTTADAKARLFELGGFKALTKGQVD 123
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 124 AVSAVLIIESYF 135
>gi|257453530|ref|ZP_05618820.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
gi|257448988|gb|EEV23941.1| conserved hypothetical protein [Enhydrobacter aerosaccus SK60]
Length = 156
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 45/140 (32%), Positives = 69/140 (49%), Gaps = 7/140 (5%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+D G+++ G+AL PL K+ K +LL+I + + IIGLP +
Sbjct: 15 MGLDFGIAKMGIALGNTLTQTASPLMQFKMDNGKPNWDELLKIIESWQVSTIIIGLPLNM 74
Query: 123 DGSETPQSNKVRSVAGRLA--VRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
DGS + N+ + A RL + A R + L DE TS EA GL KS ++
Sbjct: 75 DGSASELGNRAKKFARRLKHHLEEAHRPRPIILADERLTSREAKSLAWEYGLIKSDKE-P 133
Query: 181 TDAYAAVILLERYFSMSGQG 200
D+ A+ I+L + SG+G
Sbjct: 134 IDSIASAIMLGSWLR-SGEG 152
>gi|313115011|ref|ZP_07800503.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf.
prausnitzii KLE1255]
gi|310622665|gb|EFQ06128.1| conserved hypothetical protein TIGR00250 [Faecalibacterium cf.
prausnitzii KLE1255]
Length = 191
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 66 LGVDLGLSRTGLALSK-----GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPK 120
L VD G SRTGLA + P LK R K+ ++ E+A+ + +IGLP
Sbjct: 52 LAVDYGDSRTGLATCDRTEFLTTAITPQITLKARN-KVAARVCEVAKEIGAELIVIGLPL 110
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E ++ K R +A + + + G V + DE +T+ A D + G + R+
Sbjct: 111 NMDGTEGERAIKSRKLAKTVEIWS---GLPVRMWDERQTTCAAADILDESGTFGTKRKEI 167
Query: 181 TDAYAAVILLERYFS 195
D+ +A ++L+ Y +
Sbjct: 168 LDSVSATVILDDYLA 182
>gi|375309831|ref|ZP_09775111.1| holliday junction resolvase [Paenibacillus sp. Aloe-11]
gi|375078195|gb|EHS56423.1| holliday junction resolvase [Paenibacillus sp. Aloe-11]
Length = 135
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+D G R G+A+S G+ + L V++ RG+ E ++ ++ + E E ++GLPK+
Sbjct: 1 MGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGDDSEFGKIADLIRDHEIGEVVVGLPKNM 60
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P+ A RL G V+L DE T+ A ++ +S+ R+ D
Sbjct: 61 NGTVGPRGEICIEFANRL---KELLGLPVHLWDERLTTRSAERALLEADVSRKKRKQVVD 117
Query: 183 AYAAVILLERYF 194
AA ++L+ Y
Sbjct: 118 KLAASLILQNYL 129
>gi|440232357|ref|YP_007346150.1| RNAse H-fold protein YqgF [Serratia marcescens FGI94]
gi|440054062|gb|AGB83965.1| RNAse H-fold protein YqgF [Serratia marcescens FGI94]
Length = 141
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPK 120
G S+G +G TG A R L K + G L++ ++ Q + D I+GLP
Sbjct: 12 GTKSIGAAIGQEITGTA-------RALAAFKAQDGTPDWLKIEKMLQEWQPDLVIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DGSE P + + R A RL R G +V L DE ++ EA + + G ++ +
Sbjct: 65 NMDGSEQPLTARARKFANRLHGRF---GVKVELHDERLSTVEARSHLFDRGGFRALDKGS 121
Query: 181 TDAYAAVILLERYF 194
D+ +AV++LE +F
Sbjct: 122 VDSASAVVILESWF 135
>gi|428216929|ref|YP_007101394.1| holliday junction resolvase [Pseudanabaena sp. PCC 7367]
gi|427988711|gb|AFY68966.1| Holliday junction resolvase [Pseudanabaena sp. PCC 7367]
Length = 142
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 10/136 (7%)
Query: 64 FSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPK 120
+LG+D+G R G+A G LT + + + ++ QL +I + D ++GLP
Sbjct: 4 LALGLDVGKKRIGVAGCDRTGLIAHGLTTIVRKNWQADMSQLQQIVDQRTIDTLVVGLPY 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAER--GWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
+ DGS PQ+ +V+ A R A + G ++ +DE TS A M G+S +
Sbjct: 64 NMDGSIGPQAKQVQKFA-----RGAAKHLGLKLEYMDERLTSFTAEQMMQTSGISPRLNK 118
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+++
Sbjct: 119 AMVDRKAAALILQQWL 134
>gi|374325348|ref|YP_005078477.1| Holliday junction resolvase [Paenibacillus terrae HPL-003]
gi|357204357|gb|AET62254.1| Holliday junction resolvase [Paenibacillus terrae HPL-003]
Length = 138
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+D G R G+A+S G+ + L V++ RG+ E ++ + + E E ++GLPK+
Sbjct: 4 MGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGDDSEFGKIANLVRDNEVGEVVVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P+ A RL G V+L DE T+ A ++ +S+ R+ D
Sbjct: 64 NGTVGPRGEICIEFANRL---KELLGLPVHLWDERLTTRSAERTLLEADVSRKKRKQVVD 120
Query: 183 AYAAVILLERYF 194
AA ++L+ Y
Sbjct: 121 KLAASLILQNYL 132
>gi|338210329|ref|YP_004654376.1| Holliday junction resolvase [Runella slithyformis DSM 19594]
gi|336304142|gb|AEI47244.1| Holliday junction resolvase [Runella slithyformis DSM 19594]
Length = 137
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 71/139 (51%), Gaps = 14/139 (10%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKL-ELQLLEIAQR----EETDEFIIG 117
G L +D G RTG+A++ PL ++ E + +L+E +R E D F++G
Sbjct: 2 GRILAIDYGSKRTGIAVTD-----PLQIIATALETVRSFELIEFLKRYTAKETVDMFVVG 56
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
+P++ + ++T ++ V+ +L + A V+ DE TS A+ MI MG KS R
Sbjct: 57 MPRTLENTDTNNTHLVKGFIKQL--KKAFPDTPVHEHDERFTSRMALQTMITMGSKKSDR 114
Query: 178 QTK--TDAYAAVILLERYF 194
+ K D +A I+L+ +
Sbjct: 115 RDKGNIDKVSATIILQSFI 133
>gi|269837589|ref|YP_003319817.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM
20745]
gi|269786852|gb|ACZ38995.1| Holliday junction resolvase YqgF [Sphaerobacter thermophilus DSM
20745]
Length = 143
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 66/131 (50%), Gaps = 6/131 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+ +D+G R G+A+S G P+ + ++ + ++ +L+ + +R + + IIGLP
Sbjct: 12 IALDVGARRVGVAVSDELGLIASPVESVDMKRDGMD-RLVALIERYDPERIIIGLPLGMS 70
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G E PQ+ R+ A +L R + DE T+ A +I G ++ R+ DA
Sbjct: 71 GREGPQAAATRAFAQQLRGRVDR---PIIFWDERLTTFMADQSLIEAGHRRARRKQHVDA 127
Query: 184 YAAVILLERYF 194
AA ++L+ Y
Sbjct: 128 VAAALILQSYL 138
>gi|119945031|ref|YP_942711.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37]
gi|119863635|gb|ABM03112.1| Holliday junction resolvase YqgF [Psychromonas ingrahamii 37]
Length = 145
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
LG D G G+A + +PL+ +K ++E R+ D ++GLP +
Sbjct: 12 LGFDFGTKSIGVATGQMITATAQPLSAIKANDGIPNWDIVEKVIRDWMPDLIVVGLPLNM 71
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE P + + + A RL R G +V L DE T+A A + + G K+ + K D
Sbjct: 72 DGSEQPITQRAKKFANRLNGR---FGVKVALQDERLTTASAKEFIFTHGGYKALEKGKID 128
Query: 183 AYAAVILLERYF 194
+ +A ++LE +
Sbjct: 129 SVSAALILESWM 140
>gi|414577709|ref|ZP_11434884.1| putative Holliday junction resolvase [Shigella sonnei 3233-85]
gi|391283242|gb|EIQ41865.1| putative Holliday junction resolvase [Shigella sonnei 3233-85]
Length = 109
Score = 53.9 bits (128), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 47/85 (55%), Gaps = 3/85 (3%)
Query: 110 ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN 169
+ DE I+GLP + DG+E P + + R A R+ R G V L DE ++ EA +
Sbjct: 24 QPDEIIVGLPLNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFE 80
Query: 170 MGLSKSARQTKTDAYAAVILLERYF 194
G ++ + K D+ +AVI+LE YF
Sbjct: 81 QGGYRALNKGKVDSASAVIILESYF 105
>gi|291297317|ref|YP_003508715.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279]
gi|290472276|gb|ADD29695.1| Holliday junction resolvase YqgF [Meiothermus ruber DSM 1279]
Length = 136
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 70/143 (48%), Gaps = 19/143 (13%)
Query: 66 LGVDLGLSRTGLALS---------KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFII 116
+ +D+G +R GLA+ +G+ VR L L A+RE + F++
Sbjct: 4 VALDVGEARIGLAVGEIGSPWAFGRGYLVRKNLEADLEA------LAAFAERERAERFVV 57
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP DG + Q+ +V+++ A+R ERG ++ LLDE T+ +R+ +
Sbjct: 58 GLPLRTDGRPSAQAERVQALVE--AMR--ERGMQLELLDERYTTKLGQNRLKHAPKRIRQ 113
Query: 177 RQTKTDAYAAVILLERYFSMSGQ 199
+ K D AA+ LLE Y + GQ
Sbjct: 114 EKGKLDEAAAIALLESYLARVGQ 136
>gi|400974666|ref|ZP_10801897.1| Holliday junction resolvase-like protein [Salinibacterium sp. PAMC
21357]
Length = 153
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 16/142 (11%)
Query: 60 WRGGFSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117
R G LGVD+G R G+A S G P+ ++ R + +++ +A + EF++G
Sbjct: 1 MRTGTRLGVDVGKVRVGVARSDPHGMLATPVATVQ-RASRSVQKVIALAVECDAVEFVVG 59
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
LP + G +T + R A +LA ++A V L+DE T+ A N L S R
Sbjct: 60 LPIALSGRDTASTADAREFAQQLADKSA---VPVRLVDERMTTMSA-----NTALRASGR 111
Query: 178 QTK-----TDAYAAVILLERYF 194
K D AAVI+L+
Sbjct: 112 TAKNSRSVVDQVAAVIILQHAL 133
>gi|390454916|ref|ZP_10240444.1| Holliday junction resolvase [Paenibacillus peoriae KCTC 3763]
Length = 138
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 71/138 (51%), Gaps = 16/138 (11%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+D G R G+A+S G+ + L V++ RG+ E ++ ++ + E E ++GLPK+
Sbjct: 4 MGLDYGDRRIGVAVSDAFGWTAQGLEVIERRGDDSEFGKIADLIRDHEIGEVVVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAER-----GWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
+G+ P+ G + + A+R G V+L DE T+ A ++ +S+ R
Sbjct: 64 NGTVGPR--------GEICIEFADRLKELLGLPVHLWDERLTTRSAERALLEADVSRKKR 115
Query: 178 QTKTDAYAAVILLERYFS 195
+ D AA ++L+ Y
Sbjct: 116 KQVIDKLAASLILQNYLD 133
>gi|329938947|ref|ZP_08288321.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus
M045]
gi|329301832|gb|EGG45725.1| Holliday junction resolvase subunit [Streptomyces griseoaurantiacus
M045]
Length = 154
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R +L ++ + E E ++
Sbjct: 1 MRRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR A LA A V LLDE T+ A + G+
Sbjct: 61 GLPRSLKGGEGPAAVKVRGFAQELAGLIAP--VPVRLLDERMTTVTASQGLRASGVKSKK 118
Query: 177 RQTKTDAYAAVILLERYF-------SMSGQGTEIVL 205
++ D AAVI+L++ S G+G E+V+
Sbjct: 119 GRSVIDQAAAVIILQQALESERVSGSSPGEGVEVVI 154
>gi|22127199|ref|NP_670622.1| Holliday junction resolvase-like protein [Yersinia pestis KIM10+]
gi|45443243|ref|NP_994782.1| Holliday junction resolvase-like protein [Yersinia pestis biovar
Microtus str. 91001]
gi|108806325|ref|YP_650241.1| Holliday junction resolvase-like protein [Yersinia pestis Antiqua]
gi|108813294|ref|YP_649061.1| Holliday junction resolvase-like protein [Yersinia pestis Nepal516]
gi|145597885|ref|YP_001161961.1| Holliday junction resolvase-like protein [Yersinia pestis Pestoides
F]
gi|149367054|ref|ZP_01889087.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125]
gi|153949472|ref|YP_001399818.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis IP 31758]
gi|162421693|ref|YP_001607683.1| Holliday junction resolvase-like protein [Yersinia pestis Angola]
gi|165924969|ref|ZP_02220801.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165937369|ref|ZP_02225933.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. IP275]
gi|166010339|ref|ZP_02231237.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166212701|ref|ZP_02238736.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|167400030|ref|ZP_02305548.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167422013|ref|ZP_02313766.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167426704|ref|ZP_02318457.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|167468156|ref|ZP_02332860.1| hypothetical protein YpesF_09714 [Yersinia pestis FV-1]
gi|170023085|ref|YP_001719590.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis YPIII]
gi|218928109|ref|YP_002345984.1| Holliday junction resolvase-like protein [Yersinia pestis CO92]
gi|229837629|ref|ZP_04457791.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A]
gi|229840856|ref|ZP_04461015.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229842584|ref|ZP_04462739.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229903757|ref|ZP_04518870.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516]
gi|270487535|ref|ZP_06204609.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27]
gi|294502900|ref|YP_003566962.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003]
gi|384121339|ref|YP_005503959.1| Holliday junction resolvase-like protein [Yersinia pestis D106004]
gi|384125211|ref|YP_005507825.1| Holliday junction resolvase-like protein [Yersinia pestis D182038]
gi|384137068|ref|YP_005519770.1| Holliday junction resolvase-like protein [Yersinia pestis A1122]
gi|384413477|ref|YP_005622839.1| putative Holliday junction resolvase [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|420545464|ref|ZP_15043594.1| putative Holliday junction resolvase [Yersinia pestis PY-01]
gi|420615509|ref|ZP_15106434.1| hypothetical protein YPPY14_1089 [Yersinia pestis PY-14]
gi|420641884|ref|ZP_15130099.1| putative Holliday junction resolvase [Yersinia pestis PY-29]
gi|420700874|ref|ZP_15182909.1| hypothetical protein YPPY54_1146 [Yersinia pestis PY-54]
gi|421762381|ref|ZP_16199179.1| Holliday junction resolvase-like protein [Yersinia pestis INS]
gi|32130051|sp|Q8ZHG2.1|RUVX_YERPE RecName: Full=Putative Holliday junction resolvase
gi|124107446|sp|Q1CB76.1|RUVX_YERPA RecName: Full=Putative Holliday junction resolvase
gi|124107447|sp|Q1CEW9.1|RUVX_YERPN RecName: Full=Putative Holliday junction resolvase
gi|167016518|sp|A7FEZ0.1|RUVX_YERP3 RecName: Full=Putative Holliday junction resolvase
gi|167016519|sp|A4TI76.1|RUVX_YERPP RecName: Full=Putative Holliday junction resolvase
gi|226695321|sp|A9R307.1|RUVX_YERPG RecName: Full=Putative Holliday junction resolvase
gi|226695322|sp|B1JNP5.1|RUVX_YERPY RecName: Full=Putative Holliday junction resolvase
gi|21960265|gb|AAM86873.1|AE013933_10 hypothetical protein y3323 [Yersinia pestis KIM10+]
gi|45438111|gb|AAS63659.1| Predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Yersinia pestis biovar Microtus str. 91001]
gi|108776942|gb|ABG19461.1| hypothetical protein YPN_3134 [Yersinia pestis Nepal516]
gi|108778238|gb|ABG12296.1| hypothetical protein YPA_0328 [Yersinia pestis Antiqua]
gi|115346720|emb|CAL19603.1| conserved hypothetical protein [Yersinia pestis CO92]
gi|145209581|gb|ABP38988.1| hypothetical protein YPDSF_0578 [Yersinia pestis Pestoides F]
gi|149290668|gb|EDM40744.1| putative Holliday junction resolvase [Yersinia pestis CA88-4125]
gi|152960967|gb|ABS48428.1| conserved hypothetical protein TIGR00250 [Yersinia
pseudotuberculosis IP 31758]
gi|162354508|gb|ABX88456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis Angola]
gi|165914843|gb|EDR33456.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. IP275]
gi|165923169|gb|EDR40320.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. F1991016]
gi|165990825|gb|EDR43126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. E1979001]
gi|166205993|gb|EDR50473.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. B42003004]
gi|166960150|gb|EDR56171.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Orientalis str. MG05-1020]
gi|167050738|gb|EDR62146.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Antiqua str. UG05-0454]
gi|167054307|gb|EDR64126.1| conserved hypothetical protein TIGR00250 [Yersinia pestis biovar
Mediaevalis str. K1973002]
gi|169749619|gb|ACA67137.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis
YPIII]
gi|229679527|gb|EEO75630.1| predicted Holliday junction resolvase [Yersinia pestis Nepal516]
gi|229690894|gb|EEO82948.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. India 195]
gi|229697222|gb|EEO87269.1| predicted Holliday junction resolvase [Yersinia pestis biovar
Orientalis str. PEXU2]
gi|229704317|gb|EEO91328.1| predicted Holliday junction resolvase [Yersinia pestis Pestoides A]
gi|262360935|gb|ACY57656.1| Holliday junction resolvase-like protein [Yersinia pestis D106004]
gi|262364875|gb|ACY61432.1| Holliday junction resolvase-like protein [Yersinia pestis D182038]
gi|270336039|gb|EFA46816.1| RNAse H-fold protein YqgF [Yersinia pestis KIM D27]
gi|294353359|gb|ADE63700.1| Holliday junction resolvase-like protein [Yersinia pestis Z176003]
gi|320013981|gb|ADV97552.1| putative Holliday junction resolvase [Yersinia pestis biovar
Medievalis str. Harbin 35]
gi|342852197|gb|AEL70750.1| Holliday junction resolvase-like protein [Yersinia pestis A1122]
gi|391431152|gb|EIQ92761.1| putative Holliday junction resolvase [Yersinia pestis PY-01]
gi|391499256|gb|EIR53897.1| hypothetical protein YPPY14_1089 [Yersinia pestis PY-14]
gi|391526518|gb|EIR78535.1| putative Holliday junction resolvase [Yersinia pestis PY-29]
gi|391588778|gb|EIS33759.1| hypothetical protein YPPY54_1146 [Yersinia pestis PY-54]
gi|411177516|gb|EKS47530.1| Holliday junction resolvase-like protein [Yersinia pestis INS]
Length = 140
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A R LT K + + Q +E +E + + ++GLP
Sbjct: 12 GTKSIGVAIGQEVTGTA-------RALTAFKAQDGTPDWQQVEKLLKEWQPNLVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A RL R G +V L DE ++ EA + + G ++ +
Sbjct: 65 NMDGTEQPLTARARRFANRLHGRF---GVQVALQDERLSTVEARANLFDRGGYRALDKGS 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|408411560|ref|ZP_11182703.1| Putative Holliday junction resolvase [Lactobacillus sp. 66c]
gi|409351615|ref|ZP_11234248.1| Putative Holliday junction resolvase [Lactobacillus equicursoris
CIP 110162]
gi|407874272|emb|CCK84509.1| Putative Holliday junction resolvase [Lactobacillus sp. 66c]
gi|407876641|emb|CCK86306.1| Putative Holliday junction resolvase [Lactobacillus equicursoris
CIP 110162]
Length = 142
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 68/138 (49%), Gaps = 10/138 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G +P+ +++ ++ L ++ + E D F++GLPK
Sbjct: 4 LGLDVGSKTIGVAVSDPLGITAQPVATIEIDEDRHNFGMRSLKKLVREYEPDGFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
DGS+ + +++A RL + VY DE T+ E+ +I RQ K
Sbjct: 64 KMDGSDGASVERSQAMADRLKQKF---DLPVYFDDERLTTVESERILIEQAGMHDRRQRK 120
Query: 181 --TDAYAAVILLERYFSM 196
D AAV++L+ Y +
Sbjct: 121 KVVDQMAAVLILQNYLDL 138
>gi|157374375|ref|YP_001472975.1| Holliday junction resolvase-like protein [Shewanella sediminis
HAW-EB3]
gi|157316749|gb|ABV35847.1| putative Holliday junction resolvase [Shewanella sediminis HAW-EB3]
Length = 139
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + PL ++ + G ++ + + + D ++GLP +
Sbjct: 7 LGFDYGTKSIGVAIGQSLTGSANPLLSINAVDGIPKWEEIGMLIEEWKPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE + + + A R+ R G ++ DE T+A+A R+ MG K+ + + D
Sbjct: 67 DGSEQEMTQRAKKFANRINGR---FGVKIATQDERLTTADAKARLFEMGGYKALTKGQVD 123
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 124 AMSAVLIIESYF 135
>gi|440703645|ref|ZP_20884569.1| RNAse H domain protein, YqgF family [Streptomyces turgidiscabies
Car8]
gi|440274790|gb|ELP63288.1| RNAse H domain protein, YqgF family [Streptomyces turgidiscabies
Car8]
Length = 161
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R + +L E+ E E ++
Sbjct: 8 LRRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAQRRLKELVDEYEPIEVVV 67
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S GSE P + KVR A LA A V L+DE T+ A + G+
Sbjct: 68 GLPRSLKGSEGPAAVKVRGFADLLARLIAP--IPVRLVDERMTTVTASQGLRASGVKSKK 125
Query: 177 RQTKTDAYAAVILLERYFS-------MSGQGTEIVL 205
++ D AAVI+L++ G+G E+V+
Sbjct: 126 GRSVIDQAAAVIILQQALESERVSGKAPGEGVEVVI 161
>gi|383762095|ref|YP_005441077.1| putative Holliday junction resolvase [Caldilinea aerophila DSM
14535 = NBRC 104270]
gi|381382363|dbj|BAL99179.1| putative Holliday junction resolvase [Caldilinea aerophila DSM
14535 = NBRC 104270]
Length = 205
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 32/83 (38%), Positives = 46/83 (55%), Gaps = 3/83 (3%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLE-IAQREETDEFIIGL 118
G + +D+G +R G+A+ + RPLTV++ E + L + Q+EE I GL
Sbjct: 18 AGKLMSLDVGQARIGVAVCDPLQLGARPLTVIQCHSEDEDFATLARLVQQEEIQAIICGL 77
Query: 119 PKSWDGSETPQSNKVRSVAGRLA 141
P + DGSE PQ+ VR A RLA
Sbjct: 78 PLNMDGSEGPQAQSVRGWAQRLA 100
>gi|169831078|ref|YP_001717060.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
audaxviator MP104C]
gi|226725511|sp|B1I373.1|RUVX_DESAP RecName: Full=Putative Holliday junction resolvase
gi|169637922|gb|ACA59428.1| Holliday junction resolvase YqgF [Candidatus Desulforudis
audaxviator MP104C]
Length = 141
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 68/138 (49%), Gaps = 6/138 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+G+D+G R G+AL+ G PL VL+ + +L+ + EI + + + GLPK+
Sbjct: 4 MGLDIGDRRIGVALTDENGVAAYPLEVLERTSPEKDLRRITEIIDQYGVERVVAGLPKTL 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G PQ +KV S +L VR+ V DE T+AE +++ L + R+ D
Sbjct: 64 SGQIGPQGDKVLSFLDKLRVRST---VPVITWDERLTTAEVEKLLVSADLGRRRRRKVVD 120
Query: 183 AYAAVILLERYFSMSGQG 200
AA ++L Y + G
Sbjct: 121 KLAATLILNSYLNSRKSG 138
>gi|422877505|ref|ZP_16923975.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1056]
gi|332360144|gb|EGJ37958.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1056]
Length = 139
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + EK E +L E+ + + D+F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLSELVKEYKVDKFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ R+ A G V DE T+ A +RM+ +S+S R+
Sbjct: 64 NMNNTSGPRVEASQAYGQRI---AELFGLPVDYQDERLTTV-AAERMLVEQADISRSKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|289423537|ref|ZP_06425338.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
gi|289156039|gb|EFD04703.1| conserved hypothetical protein [Peptostreptococcus anaerobius
653-L]
Length = 140
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLP 119
G +G+D+G + G+A+S G + +T +K +K +++ ++ +E+ I+ GLP
Sbjct: 4 GRIMGLDIGNNTIGVAVSDLMGMTAQGITTIKRESKKKDIEAIKDIIKEQNVNLIVSGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ +G+ PQ+ KV + E V DE T+ A +I+ +S+ R+
Sbjct: 64 KNMNGTVGPQAEKVMKFCELIK---EETKLEVEFWDERLTTVSAEKMLISGDVSRKNRKK 120
Query: 180 KTDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 121 VIDKLAAVLILQNYL 135
>gi|333381471|ref|ZP_08473153.1| Holliday junction resolvase [Dysgonomonas gadei ATCC BAA-286]
gi|332830441|gb|EGK03069.1| Holliday junction resolvase [Dysgonomonas gadei ATCC BAA-286]
Length = 141
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +D G RTG+A+S + + + L L +RE+ + I+GLPK
Sbjct: 2 GRFLALDYGTKRTGIAVSDTLKIIANGLTTVPTHTLFDYLKTYLEREDVECIIVGLPKQM 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
+ + +R +L + +Y DE TSA A MI+ GL K RQ K
Sbjct: 62 NNEYSENMKHIRPFVKKLQNLYPDIPVEMY--DERFTSALAQKTMIDAGLRKKDRQNKAL 119
Query: 181 TDAYAAVILLERYF 194
D +AVI+L+ Y
Sbjct: 120 VDEISAVIILQSYM 133
>gi|365873622|ref|ZP_09413155.1| RNAse H-fold protein YqgF [Thermanaerovibrio velox DSM 12556]
gi|363983709|gb|EHM09916.1| RNAse H-fold protein YqgF [Thermanaerovibrio velox DSM 12556]
Length = 143
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 5/134 (3%)
Query: 63 GFSLGVDLGLSRTGLALSK-GFC-VRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPK 120
G + +DLG R G+ALS C PL VLK+ +E ++ E+ +R + ++GLP+
Sbjct: 7 GRVMALDLGEVRIGVALSDPSRCFASPLEVLKMEEGWIE-RVRELIERNQVSLVVVGLPR 65
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
DGS P++++V + L + V LDE T+A A ++ + + R+ K
Sbjct: 66 RTDGSLGPEAHRVEAWLEEL--KGVLGDVEVTTLDERFTTAIAQRFLLEADMRRDKRKGK 123
Query: 181 TDAYAAVILLERYF 194
D AA +LL+ Y
Sbjct: 124 VDKVAAAVLLQSYL 137
>gi|307103880|gb|EFN52137.1| hypothetical protein CHLNCDRAFT_139266 [Chlorella variabilis]
Length = 227
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 48/155 (30%), Positives = 75/155 (48%), Gaps = 13/155 (8%)
Query: 65 SLGVDLGLSRTGLALSK-GFCVRPLT----VLKLRGEKLELQLLEIAQREETDEFIIGLP 119
+LG+D G GLA+S G RPL L +L +L +AQRE D ++GLP
Sbjct: 30 ALGLDYGRRVVGLAVSTLGLAPRPLEGLPGPLAHEQLQLAAAVLAVAQREACDAIVLGLP 89
Query: 120 KSWDGS------ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLS 173
+ GS ++ Q + R+ A +A AA V+L DE ++ A + + G
Sbjct: 90 VTLAGSLRRRSTDSQQGRRCRNFADNMAAVAAPHAIPVFLADERGSTLAARRLLASSGSR 149
Query: 174 KSARQTKTDAYAAVILLERYFSMSGQGTEIVLPKR 208
+S + D+ AA ++LE +F S G ++ P R
Sbjct: 150 RSTLSKRMDSVAAAVILESFF--SDPGAAVLAPPR 182
>gi|411001465|ref|ZP_11377794.1| Holliday junction resolvase-like protein [Streptomyces globisporus
C-1027]
Length = 154
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L VD+G +R G+A G P+ + R +L +I + E E I+
Sbjct: 1 MRRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVEEYEPIEVIL 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR A A A V L+DE T+ A M G+
Sbjct: 61 GLPRSLGGGEGPAAAKVREFAQTFARSIAP--VPVRLVDERMTTVTAAQGMRASGVKSKK 118
Query: 177 RQTKTDAYAAVILLERYF-------SMSGQGTEIVL 205
++ D AAV++L+ + G+G E+V+
Sbjct: 119 GRSVIDQAAAVVILQNALESERASGNPPGEGVEVVV 154
>gi|251783469|ref|YP_002997774.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|386317928|ref|YP_006014092.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
gi|408402560|ref|YP_006860524.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis RE378]
gi|410495875|ref|YP_006905721.1| holliday junction resolvase [Streptococcus dysgalactiae subsp.
equisimilis AC-2713]
gi|417753347|ref|ZP_12401478.1| RNAse H domain protein, YqgF family [Streptococcus dysgalactiae
subsp. equisimilis SK1249]
gi|417927971|ref|ZP_12571359.1| RNAse H domain protein, YqgF family [Streptococcus dysgalactiae
subsp. equisimilis SK1250]
gi|422760012|ref|ZP_16813774.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
gi|242392101|dbj|BAH82560.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis GGS_124]
gi|322412847|gb|EFY03755.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. dysgalactiae ATCC 27957]
gi|323128215|gb|ADX25512.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis ATCC 12394]
gi|333770398|gb|EGL47437.1| RNAse H domain protein, YqgF family [Streptococcus dysgalactiae
subsp. equisimilis SK1249]
gi|340765845|gb|EGR88371.1| RNAse H domain protein, YqgF family [Streptococcus dysgalactiae
subsp. equisimilis SK1250]
gi|407968789|dbj|BAM62027.1| Holliday junction resolvase-like protein [Streptococcus
dysgalactiae subsp. equisimilis RE378]
gi|410441035|emb|CCI63663.1| K07447 putative holliday junction resolvase [Streptococcus
dysgalactiae subsp. equisimilis AC-2713]
Length = 139
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 71/135 (52%), Gaps = 9/135 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++K+ EK E +L E+ ++ + D+F++GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEEKEEFGFERLGELVKQYQVDQFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQT 179
+ + + P+ ++ ++ + V+ DE T+ EA +I +S+ R+
Sbjct: 64 NMNNTSGPRVEASKAYGEKIESLFS---LPVHYQDERLTTVEAERMLIEQADVSRGKRKK 120
Query: 180 KTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 121 VIDKLAAQLILQNYL 135
>gi|268318983|ref|YP_003292639.1| putative Holliday junction resolvase [Lactobacillus johnsonii
FI9785]
gi|262397358|emb|CAX66372.1| putative Holliday junction resolvase [Lactobacillus johnsonii
FI9785]
Length = 143
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 71/140 (50%), Gaps = 12/140 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G + L +K+ K Q+ +I ++ + + F++GLPK
Sbjct: 4 LGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGL-SKSAR 177
+ DGS + + GRL + VY +DE T+ +A DR++ G+ + R
Sbjct: 64 NMDGSSGHSVERSKQYGGRLKEKF---DLPVYYVDERLTTVQA-DRILVEEAGVHDRVER 119
Query: 178 QTKTDAYAAVILLERYFSMS 197
+ D AAV++L+ Y +
Sbjct: 120 KKVIDQMAAVLILQNYLEAT 139
>gi|390556629|ref|ZP_10243050.1| putative Holliday junction resolvase [Nitrolancetus hollandicus Lb]
gi|390174797|emb|CCF82333.1| putative Holliday junction resolvase [Nitrolancetus hollandicus Lb]
Length = 132
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 67/133 (50%), Gaps = 10/133 (7%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+G+D+G R G+A+S V P+ + L+ ++ LL +R + I+GLP S
Sbjct: 1 MGLDIGERRVGVAVSDELHVIASPVESVDLKRGGVD-ALLAAIERHSPERIIVGLPTSMS 59
Query: 124 GSETPQSNKVRSVAGRL--AVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
G E PQ+ VR A +L AV+ W DE T++ A +I G + R+ +
Sbjct: 60 GREGPQAKAVREFAKQLGEAVQTPITFW-----DERLTTSIAEQALITSGRRRRERKERV 114
Query: 182 DAYAAVILLERYF 194
DA AA ++L+ Y
Sbjct: 115 DAVAAALILQSYL 127
>gi|345857913|ref|ZP_08810331.1| hypothetical protein DOT_1700 [Desulfosporosinus sp. OT]
gi|344329000|gb|EGW40360.1| hypothetical protein DOT_1700 [Desulfosporosinus sp. OT]
Length = 140
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 64/130 (49%), Gaps = 4/130 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSWDG 124
+G+D G G+A+S F V +R K E+ +L E+ + E +E +IG PK+ +G
Sbjct: 4 MGLDFGSKTIGVAVSDAFFWTAQGVKTIRRSKKEIDELRELIREYEVNEIVIGYPKNMNG 63
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
+ P+ A L +E G V L DE ++ A ++ +S+S R+ D
Sbjct: 64 TLGPRCEATSEFAELLR---SEFGLLVELWDERLSTVAAQRTLLEADVSRSKRKLVIDKM 120
Query: 185 AAVILLERYF 194
AAV +L+ Y
Sbjct: 121 AAVFILQGYL 130
>gi|385799738|ref|YP_005836142.1| Holliday junction resolvase YqgF [Halanaerobium praevalens DSM
2228]
gi|309389102|gb|ADO76982.1| Holliday junction resolvase YqgF [Halanaerobium praevalens DSM
2228]
Length = 135
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSW 122
LG+D G R G+A+S G+ +PL LK+ G +KL +++ + + + ++ I+G+P +
Sbjct: 4 LGIDYGNKRVGIAVSDALGWTAQPLVTLKMNGHQKLLVEIKKYIDKYDVEKIIVGMPYNL 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGS ++ ++ L + + + DE T+ +A + ++ +S+ R+ D
Sbjct: 64 DGSRGKRAEITQAFINFL---NNQLEIPIQIQDERLTTKQAQNILLEADVSRQGRKKVID 120
Query: 183 AYAAVILLERYF 194
AA ++L+ Y
Sbjct: 121 KLAASLILQSYL 132
>gi|126175222|ref|YP_001051371.1| Holliday junction resolvase-like protein [Shewanella baltica OS155]
gi|153001548|ref|YP_001367229.1| Holliday junction resolvase-like protein [Shewanella baltica OS185]
gi|160876284|ref|YP_001555600.1| Holliday junction resolvase-like protein [Shewanella baltica OS195]
gi|217972523|ref|YP_002357274.1| Holliday junction resolvase-like protein [Shewanella baltica OS223]
gi|373950371|ref|ZP_09610332.1| Holliday junction resolvase [Shewanella baltica OS183]
gi|378709484|ref|YP_005274378.1| Holliday junction resolvase YqgF [Shewanella baltica OS678]
gi|386323791|ref|YP_006019908.1| Holliday junction resolvase [Shewanella baltica BA175]
gi|386341974|ref|YP_006038340.1| Holliday junction resolvase [Shewanella baltica OS117]
gi|418024031|ref|ZP_12663015.1| Holliday junction resolvase [Shewanella baltica OS625]
gi|125998427|gb|ABN62502.1| Holliday junction resolvase YqgF [Shewanella baltica OS155]
gi|151366166|gb|ABS09166.1| Holliday junction resolvase YqgF [Shewanella baltica OS185]
gi|160861806|gb|ABX50340.1| Holliday junction resolvase YqgF [Shewanella baltica OS195]
gi|217497658|gb|ACK45851.1| Holliday junction resolvase YqgF [Shewanella baltica OS223]
gi|315268473|gb|ADT95326.1| Holliday junction resolvase YqgF [Shewanella baltica OS678]
gi|333817936|gb|AEG10602.1| Holliday junction resolvase [Shewanella baltica BA175]
gi|334864375|gb|AEH14846.1| Holliday junction resolvase [Shewanella baltica OS117]
gi|353536904|gb|EHC06462.1| Holliday junction resolvase [Shewanella baltica OS625]
gi|373886971|gb|EHQ15863.1| Holliday junction resolvase [Shewanella baltica OS183]
Length = 141
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLR---GEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + +L ++ G Q+ ++ + + D ++GLP +
Sbjct: 7 LGFDFGTKSIGVAIGQEITASATPLLSIKAVDGIPNWDQIGDLIKEWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E +++ R A R+ A+ ++ DE T+ +A R+ +G K+ + + D
Sbjct: 67 DGTEQDMTHRARKFANRIN---AKFKVKIATQDERLTTTDAKARLFELGGFKALTKGQVD 123
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 124 AVSAVLIIESYF 135
>gi|352684576|ref|YP_004896561.1| hypothetical protein Acin_1196 [Acidaminococcus intestini RyC-MR95]
gi|350279231|gb|AEQ22421.1| conserved hypothetical protein [Acidaminococcus intestini RyC-MR95]
Length = 135
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+DLG G+A+S G R + ++ G K +L +L E+ Q+EE F++G PK+
Sbjct: 1 MGLDLGTRTIGVAVSDEMGLIARGIETIRRSGTKNDLARLHELVQKEEVGAFVLGYPKNM 60
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ + + + L + ++ L DE ++ A +I+ L++ R+ D
Sbjct: 61 NGTIGERGKASEAFSKLLQTEFPD--AKITLWDERLSTVAAEKVLIDADLTRKKRKKVID 118
Query: 183 AYAAVILLERYF 194
AAV++L+ Y
Sbjct: 119 MMAAVVILQNYL 130
>gi|429728166|ref|ZP_19262906.1| RNAse H domain protein, YqgF family [Peptostreptococcus anaerobius
VPI 4330]
gi|429150357|gb|EKX93271.1| RNAse H domain protein, YqgF family [Peptostreptococcus anaerobius
VPI 4330]
Length = 140
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLP 119
G +G+D+G + G+A+S G + +T +K +K +++ ++ +E+ I+ GLP
Sbjct: 4 GRIMGLDIGDNTIGVAVSDLMGMTAQGITTIKRESKKKDIEAIKDIIKEQNVNLIVSGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ +G+ PQ+ KV + E V DE T+ A +I+ +S+ R+
Sbjct: 64 KNMNGTVGPQAEKVMKFCELIK---EETKLEVEFWDERLTTVSAEKMLISGDVSRKNRKK 120
Query: 180 KTDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 121 VIDKLAAVLILQNYL 135
>gi|303326141|ref|ZP_07356584.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3]
gi|302864057|gb|EFL86988.1| putative Holliday junction resolvase [Desulfovibrio sp. 3_1_syn3]
Length = 142
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLE-IAQR---EETDEFIIGLP 119
+G+D GL+RTGLA+S +G PL L+L L +A R EE + ++GLP
Sbjct: 1 MGIDYGLARTGLAVSDPEGRLAFPLVTLRLEEYPNRKDFLAALAARITAEEAEAVVMGLP 60
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
DG+++ + +VR+V RL R V+ + E +S EA + + GL+ R+
Sbjct: 61 LLDDGTDSLTTRQVRNVTERLKRRV---DLPVFYMPELLSSEEAWSDLRDAGLTARKRKA 117
Query: 180 KTDAYAAVILLERYFSMSGQ 199
D AAV +L + ++ +
Sbjct: 118 VLDQQAAVRILASFLALPPE 137
>gi|227498473|ref|ZP_03928619.1| conserved hypothetical protein [Acidaminococcus sp. D21]
gi|226903931|gb|EEH89849.1| conserved hypothetical protein [Acidaminococcus sp. D21]
Length = 138
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 68/132 (51%), Gaps = 5/132 (3%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+DLG G+A+S G R + ++ G K +L +L E+ Q+EE F++G PK+
Sbjct: 4 MGLDLGTRTIGVAVSDEMGLIARGIETIRRSGTKNDLARLHELVQKEEVGAFVLGYPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ + + + L + ++ L DE ++ A +I+ L++ R+ D
Sbjct: 64 NGTIGERGKASEAFSKLLQTEFPD--AKITLWDERLSTVAAEKVLIDADLTRKKRKKVID 121
Query: 183 AYAAVILLERYF 194
AAV++L+ Y
Sbjct: 122 MMAAVVILQNYL 133
>gi|410453639|ref|ZP_11307585.1| Holliday junction resolvase YqgF [Bacillus bataviensis LMG 21833]
gi|409932936|gb|EKN69888.1| Holliday junction resolvase YqgF [Bacillus bataviensis LMG 21833]
Length = 138
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 65/135 (48%), Gaps = 8/135 (5%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQ---REETDEFIIGLP 119
++G+D+G G+ALS G+ + L LK+ EK + EI Q + D +IG P
Sbjct: 3 AMGLDVGSKTVGVALSDELGWTAQGLKTLKINEEKQQFGFEEIGQLISEYQVDTVVIGFP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ +G+ P+ + A + A+ L DE T+ A ++ +S+ R+
Sbjct: 63 KNMNGTVGPRGEASKQFAAEIE---AQFAVPTVLWDERLTTMAAERVLLEADVSRKKRKK 119
Query: 180 KTDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 120 VIDKMAAVMILQGYL 134
>gi|51597519|ref|YP_071710.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis IP 32953]
gi|186896642|ref|YP_001873754.1| Holliday junction resolvase-like protein [Yersinia
pseudotuberculosis PB1/+]
gi|62900961|sp|Q666N9.1|RUVX_YERPS RecName: Full=Putative Holliday junction resolvase
gi|226695320|sp|B2K0T4.1|RUVX_YERPB RecName: Full=Putative Holliday junction resolvase
gi|51590801|emb|CAH22447.1| Putative endonuclease involved in recombination [Yersinia
pseudotuberculosis IP 32953]
gi|186699668|gb|ACC90297.1| Holliday junction resolvase YqgF [Yersinia pseudotuberculosis
PB1/+]
Length = 140
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A R LT K + + Q +E +E + + ++GLP
Sbjct: 12 GTKSIGVAIGQEVTGTA-------RALTAFKAQDGTPDWQQVEKLLKEWQPNLVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A RL R G ++ L DE ++ EA + + G ++ +
Sbjct: 65 NMDGTEQPLTARARRFANRLHGRF---GVQIALQDERLSTVEARANLFDRGGYRALDKGS 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|258544006|ref|ZP_05704240.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826]
gi|258520747|gb|EEV89606.1| Holliday junction resolvase [Cardiobacterium hominis ATCC 15826]
Length = 134
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 64 FSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
+ L +D+G +TG+A+ + +PL VL+ ++LE RE +IGLPK
Sbjct: 5 WILALDVGQRKTGVAVGQSLTQTAKPLAVLRHPAQQLEAAHFAAWVREWSVSHIVIGLPK 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAER-GWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
DG E P + +R R+ + E G V+ +DE+ +S EA R+ +
Sbjct: 65 LRDGKEHPLAAPIR----RIGAKCQEAFGLPVHYIDEYLSSHEARARLPG--------EK 112
Query: 180 KTDAYAAVILLERYFSMSG 198
+ DA AA I+ E + + +G
Sbjct: 113 EVDAMAAAIIAEDWLAGNG 131
>gi|317049426|ref|YP_004117074.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b]
gi|316951043|gb|ADU70518.1| Holliday junction resolvase YqgF [Pantoea sp. At-9b]
Length = 138
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + R LT LK + G Q+ + + + D ++GLP +
Sbjct: 7 LGFDFGTKSIGVAVGQQLTGTARALTALKAQDGTPDWGQIERLLKEWQPDYVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE + + R A RL R G RV L DE ++ EA + G ++ ++ D
Sbjct: 67 DGSEQELTARARKFANRLHGRF---GVRVELQDERLSTVEARAGLFERGGYRALQKGAVD 123
Query: 183 AYAAVILLERYF 194
+ +AVI+LE +F
Sbjct: 124 SQSAVIILEDWF 135
>gi|403386929|ref|ZP_10928986.1| Holliday junction resolvase-like protein [Clostridium sp. JC122]
Length = 135
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S GF + +T +K +G + ++ +L++I ++ + GLPK+
Sbjct: 4 LGLDVGDRTIGVAISDPLGFTAQGITTIKRKGLEYDMNELMKICDEYSVEKIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ Q KV+ L + + DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTVGEQGEKVKQFCEELKKHTDK---PIIFWDERLTTVAAHRVMLEADLSRSKRKKLVD 120
Query: 183 AYAAVILLERYF 194
AA +L+ Y
Sbjct: 121 KIAATYILQGYL 132
>gi|255527853|ref|ZP_05394701.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7]
gi|296185454|ref|ZP_06853864.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7]
gi|255508464|gb|EET84856.1| Holliday junction resolvase YqgF [Clostridium carboxidivorans P7]
gi|296050288|gb|EFG89712.1| RNAse H-fold protein YqgF [Clostridium carboxidivorans P7]
Length = 138
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S GF + +T ++ + + ++ +L I + + GLPK+
Sbjct: 4 LGLDVGDRTIGVAVSDPLGFTAQGITTIRRKSQDADIKELKNICDEYNVETIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV V + G + + DE T+ A M+ LS++ R+ D
Sbjct: 64 NGTLGPQSEKVLKFC---EVIKEKIGLPIKMWDERLTTVAAHRAMLEADLSRNKRKKIVD 120
Query: 183 AYAAVILLERYF 194
AA+ +L+ Y
Sbjct: 121 KMAAIYILQGYL 132
>gi|346225935|ref|ZP_08847077.1| Holliday junction resolvase YqgF [Anaerophaga thermohalophila DSM
12881]
Length = 139
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 40/143 (27%), Positives = 67/143 (46%), Gaps = 10/143 (6%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L D G +TGLA++ + + + ++ L E +EE + F++G
Sbjct: 2 GRILAFDYGKKKTGLAVTDPLQIIANGLDTIPSARIYSFLEEYLAKEEVEAFVVGHATKD 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWR---VYLLDEHRTSAEAVDRMINMGLSKSARQT 179
G ++ ++R VR+ + + VY++DE TS A MI+ GLSK RQ
Sbjct: 62 SGEDSESMKQIRPF-----VRSLQNKYPHIPVYMVDERYTSKMAFQTMIDAGLSKKKRQN 116
Query: 180 K--TDAYAAVILLERYFSMSGQG 200
K D +A I+L+ Y + +G
Sbjct: 117 KMLVDKISATIILQTYLEENKRG 139
>gi|296284265|ref|ZP_06862263.1| Holliday junction resolvase-like protein [Citromicrobium
bathyomarinum JL354]
Length = 162
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 70/138 (50%), Gaps = 6/138 (4%)
Query: 57 DSLWRGGFSLGVDLGLSRTGLALSKG---FCVRPLTVLKLRGEKLELQLLEIAQREETDE 113
++L GG +G+DLG G+A+ F T+ + + + +L ++ +
Sbjct: 16 ETLPDGGALIGLDLGTKTIGIAVCDAGWRFASALKTLPRGKFGRDRDELRKLIEARSIRG 75
Query: 114 FIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLS 173
+IGLP++ DGSE P++ R+ A L A G V L DE ++ A D MI + +S
Sbjct: 76 IVIGLPRNMDGSEGPRAQASRAYARNL---AEAFGLPVLLWDERWSTKSAEDAMIGLDVS 132
Query: 174 KSARQTKTDAYAAVILLE 191
+ R + DA AA I+L+
Sbjct: 133 RRKRAERIDAEAATIILQ 150
>gi|288555385|ref|YP_003427320.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4]
gi|288546545|gb|ADC50428.1| hypothetical protein BpOF4_11875 [Bacillus pseudofirmus OF4]
Length = 139
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 68/139 (48%), Gaps = 8/139 (5%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLE---LQLLEIAQREETDEFIIGLP 119
+LG+D+G G+ALS G+ + + L+ E E L++ E+A++ + + +IGLP
Sbjct: 3 ALGLDVGTKTVGIALSDELGWTAQGIETLRRNEEDPESDFLKIAELAKQNDVETIVIGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ +G+ P + A L + DE T+ A +++ +S+ R+
Sbjct: 63 KNMNGTIGPSGERCMEFADSLKEHV---DCEFVMWDERLTTVAAERMLVSADVSRKKRKK 119
Query: 180 KTDAYAAVILLERYFSMSG 198
D AAV++L+ Y G
Sbjct: 120 VIDKMAAVMILQGYLDRKG 138
>gi|374575989|ref|ZP_09649085.1| RNAse H-fold protein YqgF [Bradyrhizobium sp. WSM471]
gi|386402406|ref|ZP_10087184.1| RNAse H-fold protein YqgF [Bradyrhizobium sp. WSM1253]
gi|374424310|gb|EHR03843.1| RNAse H-fold protein YqgF [Bradyrhizobium sp. WSM471]
gi|385743032|gb|EIG63228.1| RNAse H-fold protein YqgF [Bradyrhizobium sp. WSM1253]
Length = 163
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 61 RGGFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117
RGG +G+DLG G+A+S + T+ + ++ +LL IA + F++G
Sbjct: 18 RGGL-VGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAIASERKAVGFVLG 76
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSA 176
LP + DGSE P++ R+ A LA A + L DE R S AV+R +I M +S++
Sbjct: 77 LPINMDGSEGPRAQSTRAFARNLAGLTA---LPIGLWDE-RLSTAAVERELIGMDVSRAK 132
Query: 177 RQTKTDAYAAVILLE 191
R D +AA+ +L+
Sbjct: 133 RAEVIDEHAAIFILQ 147
>gi|239986423|ref|ZP_04707087.1| hypothetical protein SrosN1_03861 [Streptomyces roseosporus NRRL
11379]
gi|291443370|ref|ZP_06582760.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
gi|291346317|gb|EFE73221.1| conserved hypothetical protein [Streptomyces roseosporus NRRL
15998]
Length = 157
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L VD+G +R G+A G P+ + R +L +I + E E I+
Sbjct: 4 MRRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVEEYEPIEVIL 63
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR A A A V L+DE T+ A M G+
Sbjct: 64 GLPRSLGGGEGPAAAKVRDFAQVFARSIAP--VPVRLVDERMTTVTAAQGMRASGVKSKK 121
Query: 177 RQTKTDAYAAVILLERYF-------SMSGQGTEIVL 205
++ D AAV++L+ + G+G E+V+
Sbjct: 122 GRSVIDQAAAVVILQNALESERASGNPPGEGVEVVV 157
>gi|383771377|ref|YP_005450442.1| putative Holliday junction resolvase [Bradyrhizobium sp. S23321]
gi|381359500|dbj|BAL76330.1| putative Holliday junction resolvase [Bradyrhizobium sp. S23321]
Length = 163
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 61 RGGFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117
RGG +G+DLG G+A+S + T+ + ++ +LL IA + F++G
Sbjct: 18 RGGL-IGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAIAAERKAVGFVLG 76
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSA 176
LP + DGSE P++ R+ A LA A + L DE R S AV+R +I M +S++
Sbjct: 77 LPINMDGSEGPRAQSTRAFARNLAGLTA---LPIGLWDE-RLSTAAVERELIGMDVSRAK 132
Query: 177 RQTKTDAYAAVILLE 191
R D +AA+ +L+
Sbjct: 133 RAEVIDEHAAIFILQ 147
>gi|384218314|ref|YP_005609480.1| hypothetical protein BJ6T_46250 [Bradyrhizobium japonicum USDA 6]
gi|354957213|dbj|BAL09892.1| hypothetical protein BJ6T_46250 [Bradyrhizobium japonicum USDA 6]
Length = 159
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 61 RGGFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117
RGG +G+DLG G+A+S + T+ + ++ +LL IA + F++G
Sbjct: 18 RGGL-VGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAIAAERKAVGFVLG 76
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSA 176
LP + DGSE P++ R+ A LA A + L DE R S AV+R +I M +S++
Sbjct: 77 LPINMDGSEGPRAQSTRAFARNLAGLTA---LPIGLWDE-RLSTAAVERELIGMDVSRAK 132
Query: 177 RQTKTDAYAAVILLE 191
R D +AA+ +L+
Sbjct: 133 RAEVIDEHAAIFILQ 147
>gi|239907946|ref|YP_002954687.1| holliday junction resolvase [Desulfovibrio magneticus RS-1]
gi|239797812|dbj|BAH76801.1| putative holliday junction resolvase [Desulfovibrio magneticus
RS-1]
Length = 147
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKG---FCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
L +D G +R GLA+ T+ + L +LL + + + +IG P
Sbjct: 5 LAIDYGQARVGLAVCAPGSEIAFPHSTIAWETRDDLFARLLAVIEEQNPGRIVIGYPARA 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G E +VR+ A RLA R A + DE ++ EA +R+ GLS K D
Sbjct: 65 GGDEGLTGRQVRNFAARLARRTA---VPLAYADEAHSTEEAAERLREAGLSGRELLAKVD 121
Query: 183 AYAAVILLERYF 194
A AA ++LERY
Sbjct: 122 AMAAAVILERYL 133
>gi|126698882|ref|YP_001087779.1| Holliday junction resolvase-like protein [Clostridium difficile
630]
gi|254974830|ref|ZP_05271302.1| putative holliday junction resolvase [Clostridium difficile
QCD-66c26]
gi|255092218|ref|ZP_05321696.1| putative holliday junction resolvase [Clostridium difficile CIP
107932]
gi|255100303|ref|ZP_05329280.1| putative holliday junction resolvase [Clostridium difficile
QCD-63q42]
gi|255306242|ref|ZP_05350414.1| putative holliday junction resolvase [Clostridium difficile ATCC
43255]
gi|255313957|ref|ZP_05355540.1| putative holliday junction resolvase [Clostridium difficile
QCD-76w55]
gi|255516637|ref|ZP_05384313.1| putative holliday junction resolvase [Clostridium difficile
QCD-97b34]
gi|255649736|ref|ZP_05396638.1| putative holliday junction resolvase [Clostridium difficile
QCD-37x79]
gi|260682892|ref|YP_003214177.1| holliday junction resolvase [Clostridium difficile CD196]
gi|260686490|ref|YP_003217623.1| holliday junction resolvase [Clostridium difficile R20291]
gi|306519845|ref|ZP_07406192.1| putative Holliday junction resolvase [Clostridium difficile
QCD-32g58]
gi|384360481|ref|YP_006198333.1| putative Holliday junction resolvase [Clostridium difficile BI1]
gi|423082326|ref|ZP_17070918.1| RNAse H domain protein, YqgF family [Clostridium difficile
002-P50-2011]
gi|423087718|ref|ZP_17076104.1| RNAse H domain protein, YqgF family [Clostridium difficile
050-P50-2011]
gi|423090872|ref|ZP_17079158.1| RNAse H domain protein, YqgF family [Clostridium difficile
70-100-2010]
gi|118597204|sp|Q18BF1.1|RUVX_CLOD6 RecName: Full=Putative Holliday junction resolvase
gi|115250319|emb|CAJ68141.1| putative Holliday junction resolvase [Clostridium difficile 630]
gi|260209055|emb|CBA62181.1| putative holliday junction resolvase [Clostridium difficile CD196]
gi|260212506|emb|CBE03438.1| putative holliday junction resolvase [Clostridium difficile R20291]
gi|357544032|gb|EHJ26038.1| RNAse H domain protein, YqgF family [Clostridium difficile
050-P50-2011]
gi|357548652|gb|EHJ30512.1| RNAse H domain protein, YqgF family [Clostridium difficile
002-P50-2011]
gi|357555987|gb|EHJ37609.1| RNAse H domain protein, YqgF family [Clostridium difficile
70-100-2010]
Length = 141
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 70/135 (51%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLP 119
G +G+D+G G+A+S G + + +K G+K +++ L+ I + ++ ++ + GLP
Sbjct: 4 GRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ +G+ PQ KV + AE G V DE ++ A ++ +S+ R+
Sbjct: 64 KNMNGTLGPQGEKVIKFC---ELVKAETGIDVEFWDERLSTVAAERSLLEADVSRQKRKK 120
Query: 180 KTDAYAAVILLERYF 194
D AAVI+L+ Y
Sbjct: 121 VIDMLAAVIILQGYL 135
>gi|333379107|ref|ZP_08470831.1| Holliday junction resolvase [Dysgonomonas mossii DSM 22836]
gi|332885375|gb|EGK05624.1| Holliday junction resolvase [Dysgonomonas mossii DSM 22836]
Length = 141
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 61/134 (45%), Gaps = 4/134 (2%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +D G RTG+A+S + + + L L Q+E+ + I+GLPK
Sbjct: 2 GRYLALDYGTKRTGIAVSDTLKIIANGLTTVPTHTLLDYLKTYLQKEDVERIIVGLPKQM 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT- 181
+ + +R +L + Y DE TSA A M++ GL K+ RQ K+
Sbjct: 62 NNEYSENMKHIRPFVKKLQSLYPDMQIEYY--DERFTSALAHKTMLDAGLKKTDRQNKSL 119
Query: 182 -DAYAAVILLERYF 194
D +A I+L+ Y
Sbjct: 120 VDEISATIILQGYM 133
>gi|392398498|ref|YP_006435099.1| RNAse H-fold protein YqgF [Flexibacter litoralis DSM 6794]
gi|390529576|gb|AFM05306.1| RNAse H-fold protein YqgF [Flexibacter litoralis DSM 6794]
Length = 138
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSWDG 124
L +D G R GLA++ + T L+ EK L+ ++ + E + F++G+PK D
Sbjct: 5 LAIDYGQKRVGLAVTDSEKIIA-TALETIAEKEVLEYIKNYIETEPVEIFVLGMPKRLDN 63
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TD 182
S P SN V + + + L DE TS+ A+D MI+ G+SK R+ K D
Sbjct: 64 S--PSSNAAAVVKFQKKLETLFPDIPIKLEDERFTSSLALDAMISGGMSKKNRRVKGNVD 121
Query: 183 AYAAVILLERYF 194
+AV++L+ Y
Sbjct: 122 KISAVLILQTYM 133
>gi|125719019|ref|YP_001036152.1| Holliday junction resolvase-like protein [Streptococcus sanguinis
SK36]
gi|167016514|sp|A3CQZ7.1|RUVX_STRSV RecName: Full=Putative Holliday junction resolvase
gi|125498936|gb|ABN45602.1| Holliday junction resolvase, putative [Streptococcus sanguinis
SK36]
Length = 139
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + EK E +L E+ + + D+F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ R+ A G V DE T+ A +RM+ +S+S R+
Sbjct: 64 NMNNTSGPRVEASQAYGQRI---AELFGLPVDYQDERLTTV-AAERMLVEQADISRSKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|238897811|ref|YP_002923490.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
gi|229465568|gb|ACQ67342.1| Holliday junction resolvase-like protein [Candidatus Hamiltonella
defensa 5AT (Acyrthosiphon pisum)]
Length = 145
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G G+A+ + RPLT K + G +++ + D ++G P +
Sbjct: 7 IAFDFGTKSIGVAIGQNITETARPLTACKSKNGTPDWIKIERLLSEWYPDLVVVGFPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P + R L R G +V DE ++AEA + + G ++ ++ D
Sbjct: 67 DGTEQPITESARQFGHALYRRF---GIKVVFHDERLSTAEARAYLFDKGGYQALNKSSVD 123
Query: 183 AYAAVILLERYFS 195
A +AVI+LE +FS
Sbjct: 124 ATSAVIILESWFS 136
>gi|227357858|ref|ZP_03842206.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906]
gi|227161968|gb|EEI46986.1| Holliday junction resolvase [Proteus mirabilis ATCC 29906]
Length = 139
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+G D G G+A+ + RPL K + G Q+ +I + + D ++GLP +
Sbjct: 7 MGFDFGTKSIGVAIGQEVTGTARPLASFKAKDGIPDWSQIEKIIKEWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + + A RL R G ++ L DE ++ EA + G +S + D
Sbjct: 67 DGTEQLVTTQAKKFANRLHGRF---GVQIALHDERLSTVEARAHLFEQGGYRSLDKGSVD 123
Query: 183 AYAAVILLERYF 194
A +AVI+LE +F
Sbjct: 124 ATSAVIILESWF 135
>gi|212703915|ref|ZP_03312043.1| hypothetical protein DESPIG_01968 [Desulfovibrio piger ATCC 29098]
gi|212672618|gb|EEB33101.1| RNAse H domain protein, YqgF family [Desulfovibrio piger ATCC
29098]
Length = 145
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 74/141 (52%), Gaps = 15/141 (10%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKL-----RGEKLELQLLEIAQREETDEFIIGL 118
+G+D GL+RTGLA + +G PLT ++L R E L I + E D ++GL
Sbjct: 4 VGIDYGLARTGLAATDPEGIMAYPLTTIRLADYANRKEFLAALAGRILE-ERPDAVVMGL 62
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P DG+E+ + +VR+V RL R Y + E S+EA +R + + ++ R+
Sbjct: 63 PLLTDGTESMTTRQVRNVTERLKRRVP---LPFYFMSEL-LSSEAAERELR-EVGRTGRR 117
Query: 179 TKT--DAYAAVILLERYFSMS 197
K D AAV +LE + S+S
Sbjct: 118 CKAVLDQQAAVRILESFLSLS 138
>gi|455643834|gb|EMF22956.1| Holliday junction resolvase-like protein [Streptomyces gancidicus
BKS 13-15]
Length = 167
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L VD+G +R G+A G P+ + R +L ++ + E E ++
Sbjct: 14 LRRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVV 73
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR A +LA A V L+DE T+ A + G+
Sbjct: 74 GLPRSLKGGEGPAAVKVRGFAQQLARMIAP--VPVRLVDERMTTVTASQGLRASGVKSKK 131
Query: 177 RQTKTDAYAAVILLERYFSM-------SGQGTEIVL 205
++ D AAVI+L++ G+G E+V+
Sbjct: 132 GRSVIDQAAAVIILQQALESERVSGRPPGEGVEVVI 167
>gi|354596052|ref|ZP_09014069.1| Holliday junction resolvase [Brenneria sp. EniD312]
gi|353673987|gb|EHD20020.1| Holliday junction resolvase [Brenneria sp. EniD312]
Length = 142
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L D G G+A+ + RPLT K + + Q +E E + ++GLP +
Sbjct: 7 LAFDFGTKSIGVAIGQEITRTARPLTSFKAQDGVPDWQKVEKLLSEWQPALVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE P + + R A RL R G ++ L DE ++ EA + + G ++ + D
Sbjct: 67 DGSEQPLTARARKFANRLHGRF---GVQIELHDERLSTVEARADLFDRGGFRALDKGSVD 123
Query: 183 AYAAVILLERYF 194
A +AVI+LE +F
Sbjct: 124 AASAVIILESWF 135
>gi|421766517|ref|ZP_16203289.1| Putative Holliday junction resolvase [Lactococcus garvieae DCC43]
gi|407625027|gb|EKF51752.1| Putative Holliday junction resolvase [Lactococcus garvieae DCC43]
Length = 142
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G +P+ +K+ + + +L E+ + + + ++GLPK
Sbjct: 6 LGLDVGTKTVGIAVSDLLGMTAQPVETIKIDSDSGDFGFNRLAELIEEYKPSKIVLGLPK 65
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ E ++ RS +++ A+ G V DE T+ +A +I+ G+ + R+
Sbjct: 66 HMNNDEGIRAEASRSYGEKIS---AKFGVAVEYQDERLTTMQAEKVLIDGGVRRKDRKKS 122
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 123 IDKLAAVLILQNYL 136
>gi|333909426|ref|YP_004483012.1| Holliday junction resolvase [Marinomonas posidonica IVIA-Po-181]
gi|333479432|gb|AEF56093.1| Holliday junction resolvase [Marinomonas posidonica IVIA-Po-181]
Length = 153
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
LG D G +R GLA+ + +PL +K R +E E + + ++GLP
Sbjct: 21 LGFDFGTTRIGLAIGQSLTGTAQPLEPIKARDGIPNWDEIEKVFAEWQPNAVVVGLPLDM 80
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG E + R A RL R +++DE +S EA ++I G +++ + D
Sbjct: 81 DGQENEMCQRARKFAKRLHGRF---NLPYHMMDERLSSYEAKGQVIARGGNRNFKDNSVD 137
Query: 183 AYAAVILLERYFS 195
AA ++LE +F+
Sbjct: 138 GLAAQMILETWFA 150
>gi|269958631|ref|YP_003328418.1| Holliday junction resolvase [Anaplasma centrale str. Israel]
gi|269848460|gb|ACZ49104.1| putative Holliday junction resolvase [Anaplasma centrale str.
Israel]
Length = 157
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 70/139 (50%), Gaps = 7/139 (5%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
LG+D G + GLA+S G P +V R + +L +L I +RE ++GLP
Sbjct: 20 LGLDFGERKLGLAISDSTGTIAMPHSVYLRRNIRQDLGELNAILKREGIIAAVVGLPLQL 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG E VR+ +L ++ G VYL DE T+A A ++GL + Q D
Sbjct: 80 DGLEGEMCAVVRAFVRKLIKKS---GIYVYLHDERYTTAMASRATESLGLRRKESQKVDD 136
Query: 183 AYAAVILLERYFSMS-GQG 200
+AV++L++ M+ G+G
Sbjct: 137 KISAVLILQQVLDMAKGRG 155
>gi|354582082|ref|ZP_09000984.1| Holliday junction resolvase YqgF [Paenibacillus lactis 154]
gi|353199481|gb|EHB64943.1| Holliday junction resolvase YqgF [Paenibacillus lactis 154]
Length = 137
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+D G R G+ALS G+ + L V++ R + EL ++ E+ + E E ++GLPK+
Sbjct: 5 MGLDYGDRRIGIALSDVFGWTAQGLEVVERRRDGSELNRIAELVKEHEVGEIVVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P+ AG L V+L DE ++ A ++ +S+ R+ D
Sbjct: 65 NGTIGPRGEICMEFAGTL---RDSLDLPVHLWDERLSTVSAERTLLEADVSRKKRKQVVD 121
Query: 183 AYAAVILLERYF 194
AA ++L+ Y
Sbjct: 122 KMAASLILQNYL 133
>gi|333368644|ref|ZP_08460816.1| crossover junction endodeoxyribonuclease [Psychrobacter sp.
1501(2011)]
gi|332976666|gb|EGK13506.1| crossover junction endodeoxyribonuclease [Psychrobacter sp.
1501(2011)]
Length = 179
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/144 (30%), Positives = 68/144 (47%), Gaps = 7/144 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLEL-QLLEIAQREETDEFIIGLPKS 121
LG+D G+ + G+AL RP +L + G+ + LL I + ++GLP +
Sbjct: 31 LGLDYGVKKMGMALGNTVTQDARPFDILVMNNGQPADWDNLLGIIDTWKIGRVVVGLPLN 90
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINMGLSKSARQT 179
DGS + + + A RLA R E+ V L DE TS EA + +GL K+ R
Sbjct: 91 MDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAWELGLIKNERD- 149
Query: 180 KTDAYAAVILLERYFSMSGQGTEI 203
D +A +LL+ Y + +I
Sbjct: 150 PIDDISACLLLQSYLANPDHAEDI 173
>gi|256391574|ref|YP_003113138.1| Holliday junction resolvase-like protein [Catenulispora acidiphila
DSM 44928]
gi|256357800|gb|ACU71297.1| Holliday junction resolvase YqgF [Catenulispora acidiphila DSM
44928]
Length = 171
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 46/148 (31%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETD-EF 114
S R G LGVD+G R G+A G P+ +K + L L E E
Sbjct: 13 SEMRRGVRLGVDVGTVRIGVASCDRDGLLATPVETVKAEPRRASLDRLAALAAEYEAFEI 72
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSK 174
++GLP+S G E P + K+R+ A R VR G V L+DE ++ A + G+
Sbjct: 73 VVGLPRSLSGGEGPAAAKIRAYA-RDLVRRLGPGTPVRLVDERLSTVTATQGLRASGVKA 131
Query: 175 SARQTKTDAYAAVILLERYFS---MSGQ 199
++ D AAV++L+ MSG+
Sbjct: 132 KKGRSVVDQAAAVVILQNALDAERMSGR 159
>gi|28210758|ref|NP_781702.1| Holliday junction resolvase-like protein [Clostridium tetani E88]
gi|32130019|sp|Q896F1.1|RUVX_CLOTE RecName: Full=Putative Holliday junction resolvase
gi|28203196|gb|AAO35639.1| DNA integration/recombination protein [Clostridium tetani E88]
Length = 138
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
LG+D+G G+A+S G+ + + +K K +++ +E I + D+ + GLPK+
Sbjct: 4 LGLDVGDRTIGVAISDPLGWTAQGVKTIKRSNLKNDIKEIEDICNEYKVDKIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQS KV L + E+ + + DE T+ A MI LS++ R+ D
Sbjct: 64 NGTLGPQSEKVTEFCDILK-KELEK--EIIMWDERLTTVAAHKAMIEGDLSRAKRKKIVD 120
Query: 183 AYAAVILLERYF 194
AA+ +L+ Y
Sbjct: 121 KIAAIYILQGYL 132
>gi|398821526|ref|ZP_10579977.1| RNAse H-fold protein YqgF [Bradyrhizobium sp. YR681]
gi|398227802|gb|EJN13973.1| RNAse H-fold protein YqgF [Bradyrhizobium sp. YR681]
Length = 163
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 61 RGGFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117
RGG +G+DLG G+A+S + T+ + + ++ +LL IA + F++G
Sbjct: 18 RGGL-IGLDLGTKTIGVAVSNPDRRLATGVETIQRKQFKQDAARLLAIAAERKVVGFVLG 76
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSA 176
LP + DGSE P++ R+ A L A + L DE R S AV+R +I M +S++
Sbjct: 77 LPINMDGSEGPRAQSTRAFARNL---AGLTTLPIGLWDE-RLSTAAVERELIGMDVSRAK 132
Query: 177 RQTKTDAYAAVILLE 191
R D +AA+ +L+
Sbjct: 133 RAEVIDEHAAIFILQ 147
>gi|422861692|ref|ZP_16908332.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK330]
gi|327467925|gb|EGF13415.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK330]
Length = 139
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + EK E +L E+ + + D+F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ R+ A G V DE T+ A +RM+ +S+S R+
Sbjct: 64 NMNNTSGPRVEASQAYGQRI---AELFGLPVDYQDERLTTV-AAERMLVEQADVSRSKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|422824588|ref|ZP_16872775.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK405]
gi|422825332|ref|ZP_16873511.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK678]
gi|422850590|ref|ZP_16897260.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK150]
gi|422856681|ref|ZP_16903337.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1]
gi|422857416|ref|ZP_16904066.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1057]
gi|422863609|ref|ZP_16910240.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK408]
gi|422866521|ref|ZP_16913146.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1058]
gi|324992637|gb|EGC24558.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK405]
gi|324995834|gb|EGC27745.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK678]
gi|325695338|gb|EGD37238.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK150]
gi|327460040|gb|EGF06379.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1]
gi|327463467|gb|EGF09786.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1057]
gi|327472186|gb|EGF17623.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK408]
gi|327488630|gb|EGF20430.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1058]
Length = 139
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + EK E +L E+ + + D+F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ R+ A G V DE T+ A +RM+ +S+S R+
Sbjct: 64 NMNNTSGPRVEASQAYGQRV---AELFGLPVDYQDERLTTV-AAERMLVEQADISRSKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|294634382|ref|ZP_06712919.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC
23685]
gi|451966563|ref|ZP_21919816.1| putative Holliday junction resolvase [Edwardsiella tarda NBRC
105688]
gi|291092190|gb|EFE24751.1| putative Holliday junction resolvase [Edwardsiella tarda ATCC
23685]
gi|451314864|dbj|GAC65178.1| putative Holliday junction resolvase [Edwardsiella tarda NBRC
105688]
Length = 140
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L D G G A+ + RPL K + Q +E RE + D ++GLP +
Sbjct: 7 LAFDFGTRSIGCAIGQELTGSARPLQSFKANEGIPDWQQIEKVLREWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE P + R A RL R G ++ L DE ++ EA + G ++ + + D
Sbjct: 67 DGSEQPLTQLARKFANRLHGRF---GVQIALHDERLSTVEARAHLFADGGYRALEKGRVD 123
Query: 183 AYAAVILLERYF 194
A +A ++LE +F
Sbjct: 124 AASAALILESWF 135
>gi|148651960|ref|YP_001279053.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1]
gi|172048441|sp|A5WBR2.1|RUVX_PSYWF RecName: Full=Putative Holliday junction resolvase
gi|148571044|gb|ABQ93103.1| Holliday junction resolvase YqgF [Psychrobacter sp. PRwf-1]
Length = 177
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/148 (30%), Positives = 68/148 (45%), Gaps = 7/148 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLEL-QLLEIAQREETDEFIIGLPKS 121
LG+D G+ + G+AL RP +L + G+ + LL I ++GLP +
Sbjct: 29 LGLDYGVKKMGMALGNTVTQDARPFDILAMNNGQPADWDNLLGIIDTWRIGRVVVGLPLN 88
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINMGLSKSARQT 179
DGS + + + A RLA R E+ V L DE TS EA + +GL K+ R
Sbjct: 89 MDGSSSMIAKRAHKFARRLAHRLMEQRIHVPVQLFDERLTSVEAREMAWELGLIKNERD- 147
Query: 180 KTDAYAAVILLERYFSMSGQGTEIVLPK 207
D +A +LL+ Y + +I K
Sbjct: 148 PIDDISACLLLQSYLANPDHAEDIATYK 175
>gi|298207814|ref|YP_003715993.1| Holliday junction resolvase-like protein [Croceibacter atlanticus
HTCC2559]
gi|83850452|gb|EAP88320.1| Holliday junction resolvase-like protein [Croceibacter atlanticus
HTCC2559]
Length = 135
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 6/131 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + +R LE L + ++E+ + +IG PK DG+
Sbjct: 5 LAIDYGAKRTGIAVTDELKLIASGLTTVRTHDLESFLKDYFEKEKVELVLIGEPKQVDGT 64
Query: 126 ETPQSNKVRSVAGRL-AVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TD 182
+ ++ R V + RV DE TS A MI+ GL K RQ K D
Sbjct: 65 HSENEERIIHFINRFKKVFPTMQFERV---DERFTSKMAFQTMIDSGLKKKQRQNKALVD 121
Query: 183 AYAAVILLERY 193
+A I+L+ Y
Sbjct: 122 EISATIILQTY 132
>gi|325680097|ref|ZP_08159663.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8]
gi|324108172|gb|EGC02422.1| RNAse H domain protein, YqgF family [Ruminococcus albus 8]
Length = 140
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 66/136 (48%), Gaps = 12/136 (8%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
L VD G +RTG+A+S F P+ T+ + ++L ++ +IA+ E ++GLP +
Sbjct: 4 LAVDYGDARTGIAISDNSEFLASPVCTITEYHADRLAQKVADIAKERGAGEIVVGLPINM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGW---RVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+G++ ++ K + A L RG V + DE T+ A + + R+
Sbjct: 64 NGTKGERAEKCEAFAEML------RGLVDVEVKMWDERSTTVTAHQYLNETNVRGKKRKA 117
Query: 180 KTDAYAAVILLERYFS 195
D AA I+LE Y +
Sbjct: 118 VVDTVAATIILESYLA 133
>gi|383483234|ref|YP_005392148.1| Holliday junction resolvase-like protein [Rickettsia montanensis
str. OSU 85-930]
gi|378935588|gb|AFC74089.1| Holliday junction resolvase-like protein [Rickettsia montanensis
str. OSU 85-930]
Length = 154
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/129 (31%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS K PL T+ ++ + LL I ++ + IIGLP
Sbjct: 20 IAIDYGSKKLGIALSNQKRSIAMPLNTITEINKKIFITSLLNIIEKYKVCGVIIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A LA +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNIVMKFAEELA---KSINLPIYLQDERLTTKAANNFLKSFGVKRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|322390444|ref|ZP_08063964.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 903]
gi|321142843|gb|EFX38301.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 903]
Length = 139
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 72/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++++ +K E +L E+ + + D F++GLPK
Sbjct: 4 MGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P +V + A+ A + G V DE T+ A +RM+ +S+S R+
Sbjct: 64 NMNNTSGP---RVEASQAYGAMIAEKFGMPVDYQDERLTTV-AAERMLIEQADISRSKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|269121338|ref|YP_003309515.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
gi|268615216|gb|ACZ09584.1| Holliday junction resolvase YqgF [Sebaldella termitidis ATCC 33386]
Length = 137
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 7/135 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
LG+D+G R G+A S G PL V+ ++ E+ Q+E T+ ++G+PKS D
Sbjct: 5 LGLDVGDVRIGVAKSDILGILATPLEVINRNDTDPVKRIKELLQQENTNGLVVGIPKSLD 64
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--T 181
G+ Q KV L + + +DE T+ EA + N K+ R+ +
Sbjct: 65 GTVKRQVEKVNEFIEEL--KKNIDNLEIITVDERYTTVEAEHYLRNYS-KKNPRERRKVV 121
Query: 182 DAYAAVILLERYFSM 196
D AA I+L+++ M
Sbjct: 122 DMVAASIILQKFLDM 136
>gi|56551681|ref|YP_162520.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ZM4]
gi|260752737|ref|YP_003225630.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|384411438|ref|YP_005620803.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|397676390|ref|YP_006517928.1| Holliday junction resolvase [Zymomonas mobilis subsp. mobilis ATCC
29191]
gi|56543255|gb|AAV89409.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ZM4]
gi|258552100|gb|ACV75046.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
NCIMB 11163]
gi|335931812|gb|AEH62352.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. mobilis
ATCC 10988]
gi|395397079|gb|AFN56406.1| Holliday junction resolvase [Zymomonas mobilis subsp. mobilis ATCC
29191]
Length = 179
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 9/140 (6%)
Query: 56 KDSLWRGGFSLGVDLGLSRTGLAL--SKGFCVRPLTVLKLRGEKLELQLL-EIAQREETD 112
+++L R G G+D+G GLAL S+ P ++ + L+L+LL + ++++
Sbjct: 36 QEALPRKGRLAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFTLDLELLRQFVEKQQVK 95
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMG 171
+IGLP + DGS++P++ VR+ A +A + V + DE R S +AV R ++
Sbjct: 96 GLVIGLPLNLDGSDSPRTQSVRAFAKNVAPLSLP----VLMWDE-RWSTKAVTRTLLEAD 150
Query: 172 LSKSARQTKTDAYAAVILLE 191
S++ R D AA +L+
Sbjct: 151 ASRARRSEVVDKMAAAYILQ 170
>gi|442323352|ref|YP_007363373.1| hypothetical protein MYSTI_06416 [Myxococcus stipitatus DSM 14675]
gi|441490994|gb|AGC47689.1| hypothetical protein MYSTI_06416 [Myxococcus stipitatus DSM 14675]
Length = 154
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLR---GEKLELQLLEIAQREETDEFIIGLPKS 121
+LG+D G G+A+S G + V +R + L + Q E D F+IGLP +
Sbjct: 3 TLGLDFGTKTIGVAVSDGLGLTAQGVTTIRRTSLKADLAALAALVQEYEADRFVIGLPLN 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DGSE P++ R A + G +V L+DE ++ A ++ +S++ R+
Sbjct: 63 MDGSEGPRAEASRKFADTV---TQSLGIQVELVDERLSTVAATRTLLEADVSRARRKEVI 119
Query: 182 DAYAAVILLERYF 194
D AA +L+ +
Sbjct: 120 DQVAAQFILQGWL 132
>gi|408533293|emb|CCK31467.1| Putative Holliday junction resolvase [Streptomyces davawensis JCM
4913]
Length = 154
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R + +L ++ + E E ++
Sbjct: 1 MRRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAQRRLKQLVEEYEPIEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR A LA A V L+DE T+ A + G+
Sbjct: 61 GLPRSLKGGEGPAAVKVRGFAQELAKGIAP--VPVRLVDERMTTVTASQGLRASGVKSKK 118
Query: 177 RQTKTDAYAAVILLERYFS-------MSGQGTEIVL 205
++ D AAVI+L++ G+G E+V+
Sbjct: 119 GRSVIDQAAAVIILQQALESERVSGKAPGEGVEVVI 154
>gi|226328801|ref|ZP_03804319.1| hypothetical protein PROPEN_02701 [Proteus penneri ATCC 35198]
gi|225201987|gb|EEG84341.1| RNAse H domain protein, YqgF family [Proteus penneri ATCC 35198]
Length = 139
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+G D G G+A+ + RPL K + G Q+ +I + + D ++GLP +
Sbjct: 7 MGFDFGTKSIGVAIGQEITGTARPLASFKAKDGIPDWAQIEKIIKEWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + + A RL R G ++ L DE ++ EA + G +S + D
Sbjct: 67 DGTEQLVTAQAKKFANRLHGRF---GVQIALHDERLSTVEARAHLFERGGYRSLDKGSVD 123
Query: 183 AYAAVILLERYF 194
A +AVI+LE +F
Sbjct: 124 AASAVIILESWF 135
>gi|317128239|ref|YP_004094521.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
2522]
gi|315473187|gb|ADU29790.1| Holliday junction resolvase YqgF [Bacillus cellulosilyticus DSM
2522]
Length = 142
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G+ + L +K E E +L EI + ++ ++GLPK
Sbjct: 4 LGLDVGTHTIGVAISDAFGWTAQGLETIKRAKEDEEQDFSRLDEIIRNKDVSTIVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ +G+ P ++ A +L R +V L DE T+ A +++ +S+ R+
Sbjct: 64 NMNGTIGPSGELCQAFAEKLKERT---NLKVELWDERLTTVAAEKMLVSADVSRKKRKKV 120
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 121 IDKMAAVMILQGYL 134
>gi|372272865|ref|ZP_09508913.1| Holliday junction resolvase [Marinobacterium stanieri S30]
Length = 160
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
LG D G +R GLA+ + P+ ++ R K + L+ + Q + ++G+P +
Sbjct: 9 LGFDFGTTRIGLAIGQSLTASANPIDPIRARDGKPDWDSLDAVIQHWQPHVLVVGIPLNM 68
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+ + + + R A R+ R +L DE T+AEA ++ G + +Q D
Sbjct: 69 DGTISEMARRARKFANRIQDRYQ---LPCFLCDERLTTAEAKRIHLDAGGGTNFKQESVD 125
Query: 183 AYAAVILLERYFS 195
AA ++L+ +F+
Sbjct: 126 GLAAQLILQDWFN 138
>gi|430750681|ref|YP_007213589.1| RNAse H-fold protein YqgF [Thermobacillus composti KWC4]
gi|430734646|gb|AGA58591.1| RNAse H-fold protein YqgF [Thermobacillus composti KWC4]
Length = 138
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 70/136 (51%), Gaps = 12/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
+G+DLG R G+A+S G+ + + V++ + EL+ +E RE E E ++GLP++
Sbjct: 4 MGLDLGDRRIGVAVSDELGWTAQGVGVVERHRDGRELEEIERLVREREVSEIVVGLPRNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERG---WRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
DGS P+ + A L RG V+L DE T+A A ++ +S+ R+
Sbjct: 64 DGSIGPRGEICIAFADML------RGKLQLPVHLWDERLTTAAAERTLLEADVSRRKRRQ 117
Query: 180 KTDAYAAVILLERYFS 195
D AA ++L+ Y
Sbjct: 118 VVDKLAATLILQHYLD 133
>gi|302561724|ref|ZP_07314066.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000]
gi|302479342|gb|EFL42435.1| Holliday junction resolvase [Streptomyces griseoflavus Tu4000]
Length = 163
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/162 (29%), Positives = 72/162 (44%), Gaps = 12/162 (7%)
Query: 54 RKKDSLWRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREE 110
R + R G L +D+G +R G+A G P+ + R +L + Q E
Sbjct: 4 RTDGPVMRRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGLLVQEYE 63
Query: 111 TDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINM 170
E ++GLP+S G E P + KVR A LA A V L+DE T+ A +
Sbjct: 64 PIEVVVGLPRSLKGGEGPAAAKVRGFARELARGIAP--VPVRLVDERMTTVTASQGLRAS 121
Query: 171 GLSKSARQTKTDAYAAVILLERYFSM-------SGQGTEIVL 205
G+ ++ D AAVI+L++ G+G E+V+
Sbjct: 122 GVKSKKGRSVIDQAAAVIILQQALESERVSGRPPGEGVEVVI 163
>gi|108758109|ref|YP_633960.1| hypothetical protein MXAN_5823 [Myxococcus xanthus DK 1622]
gi|118597216|sp|Q1D063.1|RUVX_MYXXD RecName: Full=Putative Holliday junction resolvase
gi|108461989|gb|ABF87174.1| conserved hypothetical protein TIGR00250 [Myxococcus xanthus DK
1622]
Length = 151
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLE---IAQREETDEFIIGLPKS 121
++G+DLG G+A+S G + + +R L+ L +A E ++GLP +
Sbjct: 3 TMGLDLGTKTIGVAVSDGLGLTAQGITTVRRTSLKADLAALATVASEHEVTHVVLGLPLN 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DGSE P++ R A L A G V L DE ++ A ++ +S++ R+
Sbjct: 63 MDGSEGPRAEASRKFADTL---AQSLGVTVELWDERLSTVAATRTLLEADVSRARRREVI 119
Query: 182 DAYAAVILLERYF 194
D AA +L+ +
Sbjct: 120 DQVAAQFILQGWL 132
>gi|294811564|ref|ZP_06770207.1| Putative Holliday junction resolvase [Streptomyces clavuligerus
ATCC 27064]
gi|326440051|ref|ZP_08214785.1| Holliday junction resolvase-like protein [Streptomyces clavuligerus
ATCC 27064]
gi|294324163|gb|EFG05806.1| Putative Holliday junction resolvase [Streptomyces clavuligerus
ATCC 27064]
Length = 157
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 44/158 (27%), Positives = 73/158 (46%), Gaps = 12/158 (7%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEF 114
S R G L +D+G +R G+A G P+ + R ++ + + E E
Sbjct: 2 SSLRRGRRLALDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRIRALVEEYEPIEI 61
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSK 174
++GLP+S +G E P + KVR+ AG +A A V L+DE T+ A + G+
Sbjct: 62 VVGLPRSLNGREGPAAKKVRTFAGEVARGVAP--VPVRLVDERMTTVTATQGLRASGVKA 119
Query: 175 SARQTKTDAYAAVILLERYF-------SMSGQGTEIVL 205
++ D AAV++L+ S G+ E+V+
Sbjct: 120 KKGRSVVDQAAAVVILQNALESERAAGSPPGESVEVVV 157
>gi|365866659|ref|ZP_09406267.1| putative holliday junction resolvase [Streptomyces sp. W007]
gi|364003932|gb|EHM25064.1| putative holliday junction resolvase [Streptomyces sp. W007]
Length = 161
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 47/156 (30%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L VD+G +R G+A G P+ + R +L +I + E E I+
Sbjct: 8 MRRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVEEYEPIEVIL 67
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR A A A V L+DE T+ A M G+
Sbjct: 68 GLPRSLGGGEGPAAVKVREFAQVFARSIAP--VPVRLVDERMTTVTAAQGMRASGVKSKK 125
Query: 177 RQTKTDAYAAVILLERYF-------SMSGQGTEIVL 205
++ D AAV++L+ + G+G E+V+
Sbjct: 126 GRSVIDQAAAVVILQNALESERASGNPPGEGVEVVV 161
>gi|359404551|ref|ZP_09197387.1| RNAse H domain protein, YqgF family [Prevotella stercorea DSM
18206]
gi|357560183|gb|EHJ41581.1| RNAse H domain protein, YqgF family [Prevotella stercorea DSM
18206]
Length = 138
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 62/136 (45%), Gaps = 4/136 (2%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + + +L L RE + ++G PK +G
Sbjct: 5 LSIDYGKKRTGIAVTDPLQIIAGGLATVATCELMSFLQNYVARESVERIVVGEPKQLNGE 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+ +V+ +L R V DE TS A +I+ G+SK ARQ K D
Sbjct: 65 PSENLPRVKQFVAKL--RKTLPDIPVEFYDERFTSVLAHKTIIDSGISKKARQNKALVDE 122
Query: 184 YAAVILLERYFSMSGQ 199
+A I+L+ Y M G+
Sbjct: 123 ISATIILQDYLRMKGK 138
>gi|29833393|ref|NP_828027.1| Holliday junction resolvase-like protein [Streptomyces avermitilis
MA-4680]
gi|62901021|sp|Q827S3.1|RUVX_STRAW RecName: Full=Putative Holliday junction resolvase
gi|29610516|dbj|BAC74562.1| hypothetical protein SAV_6851 [Streptomyces avermitilis MA-4680]
Length = 156
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L VD+G +R G+A G P+ + R +L ++ + E E ++
Sbjct: 3 MRRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVL 62
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR+ A LA A V L+DE T+ A + G+
Sbjct: 63 GLPRSLKGGEGPAAVKVRAFAQELARVIAP--VPVRLMDERMTTVTASQGLRASGVKSKK 120
Query: 177 RQTKTDAYAAVILLERYFS-------MSGQGTEIVL 205
++ D AAVI+L++ G+G E+V+
Sbjct: 121 GRSVIDQAAAVIILQQALESERVSGKAPGEGVEVVI 156
>gi|417002084|ref|ZP_11941473.1| RNAse H domain protein, YqgF family [Anaerococcus prevotii
ACS-065-V-Col13]
gi|325479225|gb|EGC82321.1| RNAse H domain protein, YqgF family [Anaerococcus prevotii
ACS-065-V-Col13]
Length = 139
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 65/138 (47%), Gaps = 6/138 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+G+D+G G+ALS + +K + L++Q LLEI + + ++GLPK+
Sbjct: 5 MGLDVGDKTIGVALSDPMFLLAQAKETIKRKKASLDIQRLLEIIDENDVNLIVVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+ + PQS KV S L + + DE T+ ++ +I+M + + R+ D
Sbjct: 65 NNTIGPQSMKVMSFVDLL---KKQTDVEIVYEDERMTTIQSESVLIDMKVRRENRKQYID 121
Query: 183 AYAAVILLERYFSMSGQG 200
AA +L+ Y G
Sbjct: 122 KIAATFILQTYLDRRKNG 139
>gi|210622572|ref|ZP_03293254.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275]
gi|210154155|gb|EEA85161.1| hypothetical protein CLOHIR_01202 [Clostridium hiranonis DSM 13275]
Length = 140
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLP 119
G +G+D+G G+A+S G + + +K +K +++ + +I + ++ + + GLP
Sbjct: 4 GRIMGLDIGDKTIGVAVSDLMGMTAQGIKTIKRTSKKNDIEEIKQIIKEKQVNLIVSGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ +G+ PQ KV+ + E G + DE T+ A +I +S+ R+
Sbjct: 64 KNMNGTVGPQGEKVQKFCELIK---EETGLEIEFWDERLTTVAAEKTLITADVSRKKRKN 120
Query: 180 KTDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 121 VIDMMAAVLILQGYL 135
>gi|307132696|ref|YP_003884712.1| Holliday junction resolvase [Dickeya dadantii 3937]
gi|306530225|gb|ADN00156.1| predicted Holliday junction resolvase [Dickeya dadantii 3937]
Length = 143
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RPLT LK + + Q +E E + I+GLP
Sbjct: 12 GTRSIGVAIGQEITGTA-------RPLTSLKAQDGVPDWQKVEKLLNEWQPALVIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R + RL R G +V L DE ++ EA + G ++ +
Sbjct: 65 NMDGTEQPLTARARKFSQRLHGRF---GVKVDLHDERLSTVEARADLFERGGFRALDKGS 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|148259884|ref|YP_001234011.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5]
gi|338989442|ref|ZP_08634284.1| Putative Holliday junction resolvase [Acidiphilium sp. PM]
gi|167012685|sp|A5FWW0.1|RUVX_ACICJ RecName: Full=Putative Holliday junction resolvase
gi|146401565|gb|ABQ30092.1| Holliday junction resolvase YqgF [Acidiphilium cryptum JF-5]
gi|338205630|gb|EGO93924.1| Putative Holliday junction resolvase [Acidiphilium sp. PM]
Length = 158
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 48/139 (34%), Positives = 72/139 (51%), Gaps = 10/139 (7%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQ--LLEIAQREETDE 113
+L R +G+D G G+ALS P +K RG+ E +L+IA++E
Sbjct: 12 TLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMK-RGKLAEAAATILDIARKEGAAA 70
Query: 114 FIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGL 172
IIGLP S DGS P + R A + A E G V ++DE R S+ AV+R +I +
Sbjct: 71 LIIGLPLSMDGSIGPAAQAARDWAHAI---ARETGLPVAMMDE-RLSSAAVNRALIEADV 126
Query: 173 SKSARQTKTDAYAAVILLE 191
+++ R + DA AA +L+
Sbjct: 127 TRAKRAGRVDAAAASYMLQ 145
>gi|395766682|ref|ZP_10447221.1| RNAse H-fold protein YqgF [Bartonella doshiae NCTC 12862]
gi|395415806|gb|EJF82233.1| RNAse H-fold protein YqgF [Bartonella doshiae NCTC 12862]
Length = 159
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 67 GVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSWD 123
G+DLG G+A+S + F P VLK + + L++I RE +IGLP + +
Sbjct: 21 GLDLGTKTIGIAISDKRLFFSNPRPVLKRKKFTEDANTLIQIFNRENVGVAVIGLPLNMN 80
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM-INMGLSKSARQTKTD 182
GS P++ R+ +A R ++ + R S A +R+ + MG+S++ R + D
Sbjct: 81 GSSGPRAQATRTFVSTMATRTKIP----FVFWDERLSTIAAERIFLEMGISRTKRAPRID 136
Query: 183 AYAAVILLE 191
+ AA +L+
Sbjct: 137 SAAAAFILQ 145
>gi|411118865|ref|ZP_11391245.1| RNAse H-fold protein YqgF [Oscillatoriales cyanobacterium JSC-12]
gi|410710728|gb|EKQ68235.1| RNAse H-fold protein YqgF [Oscillatoriales cyanobacterium JSC-12]
Length = 155
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 65 SLGVDLGLSRTGLALS--KGFCVRPLTVLKLRG--EKLELQLLEIAQREETDEFIIGLPK 120
+LG+D+G R G+A G LT L + E LE QL ++ + E ++GLP
Sbjct: 5 ALGLDIGRKRVGVAGCDGTGLIAFGLTTLYRKSFQEDLE-QLRQLVRDREVTVLVVGLPY 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
S DG+ Q+ +++ A +A AE V +DE TS +A + G+S S R+
Sbjct: 64 SMDGTLGFQARQIQKFANAIA---AELNLPVVYIDERLTSFQAEQMLQAEGISPSRRKDL 120
Query: 181 TDAYAAVILLERYF 194
D AA I+L+++
Sbjct: 121 IDRKAAAIILQQWL 134
>gi|395243122|ref|ZP_10420109.1| Putative Holliday junction resolvase [Lactobacillus hominis CRBIP
24.179]
gi|394484352|emb|CCI81117.1| Putative Holliday junction resolvase [Lactobacillus hominis CRBIP
24.179]
Length = 142
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 12/137 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQ--RE-ETDEFIIGLPK 120
LG+D+G G+A+S G + + + + K + I + RE E D F++GLPK
Sbjct: 4 LGLDVGSKTVGVAVSDPLGITAQEVETIPIDESKFNFGIKRIKRLVREYEIDGFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGL-SKSAR 177
+ DGS+ P + +S RL + + VY DE T+ +A DR++ G+ ++ R
Sbjct: 64 NMDGSDGPSVARSKSYGERLTKKFS---LPVYYNDERLTTKQA-DRLLIQEAGIHDRTKR 119
Query: 178 QTKTDAYAAVILLERYF 194
+ D AAV++L+ Y
Sbjct: 120 KKVIDQMAAVLILQNYL 136
>gi|365847861|ref|ZP_09388343.1| RNAse H domain protein, YqgF family [Yokenella regensburgei ATCC
43003]
gi|364571717|gb|EHM49294.1| RNAse H domain protein, YqgF family [Yokenella regensburgei ATCC
43003]
Length = 139
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 66/131 (50%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+GV +G TG A RPL LK + + +E +E + + I+GLP + D
Sbjct: 15 SIGVAIGQRITGTA-------RPLGALKAQDGTPDWNAVERLLKEWQPENVIVGLPLNMD 67
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E P + + R A ++ R G +V L DE ++ EA + G ++ + D+
Sbjct: 68 GTEQPLTARARKFANKIHGRF---GVQVTLHDERLSTVEAKAGLFEQGGYRALNKGSVDS 124
Query: 184 YAAVILLERYF 194
+AV++LE +F
Sbjct: 125 ASAVVILESFF 135
>gi|315655397|ref|ZP_07908297.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333]
gi|315490337|gb|EFU79962.1| Holliday junction resolvase [Mobiluncus curtisii ATCC 51333]
Length = 152
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 68/139 (48%), Gaps = 6/139 (4%)
Query: 59 LWRGGFSLGVDLGLSRTGLA--LSKGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFI 115
+ G F L +D+G +R G+A +S P+ L+++ + EL +LL I
Sbjct: 1 MVAGNF-LAIDVGKARIGVARSVSGTSLALPVETLQVQTDGSELDELLAIITESNPAAVF 59
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
+GLPK G E + RS A RL R E V+L+DE +SA+A ++ +G+
Sbjct: 60 VGLPKLMSGKEGEAARMARSYARRLVRRLGE--LPVHLIDERLSSADAHAKLQQVGVCAR 117
Query: 176 ARQTKTDAYAAVILLERYF 194
++ D AAV +L R
Sbjct: 118 RQKEMVDQLAAVTILTRAL 136
>gi|313203125|ref|YP_004041782.1| holliday junction resolvase yqgf [Paludibacter propionicigenes WB4]
gi|312442441|gb|ADQ78797.1| Holliday junction resolvase YqgF [Paludibacter propionicigenes WB4]
Length = 139
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 4/134 (2%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +D G R GLA++ + + + ++ L + +E ++F+IGLPK
Sbjct: 2 GRILAIDYGQKRVGLAVTDMLHISANGLDTVSAHEVLTYLEKYIAKEPVEKFVIGLPKQM 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
+G ++ +R A L + E + +DE TS A M+ GL K RQ K
Sbjct: 62 NGQDSDSMQYIRPFATALQRKFPE--IELVYVDERFTSVLAHKAMLEGGLKKKDRQNKEL 119
Query: 181 TDAYAAVILLERYF 194
D +A I+L+ Y
Sbjct: 120 VDKISATIILQSYL 133
>gi|293394486|ref|ZP_06638782.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
gi|291422951|gb|EFE96184.1| conserved hypothetical protein [Serratia odorifera DSM 4582]
Length = 140
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+G +G TG A R L K + + Q +E +E + D ++GLP
Sbjct: 12 GTKSIGAAIGQEITGTA-------RALAAFKAQDGTPDWQKIEKLLKEWQPDLVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DGSE P + + R A RL R G ++ L DE ++ EA + + G ++ +
Sbjct: 65 NMDGSEQPLTERARKFANRLHGRF---GVKIDLHDERLSTVEARSHLFDRGGFRALDKGS 121
Query: 181 TDAYAAVILLERYF 194
D+ +AV++LE +F
Sbjct: 122 VDSASAVVILESWF 135
>gi|383481384|ref|YP_005390299.1| Holliday junction resolvase-like protein [Rickettsia rhipicephali
str. 3-7-female6-CWPP]
gi|378933723|gb|AFC72226.1| Holliday junction resolvase-like protein [Rickettsia rhipicephali
str. 3-7-female6-CWPP]
Length = 154
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + IIGLP +
Sbjct: 20 IAIDCGSKKLGIALSNQERSIAMPLNTITEINTKIVITSLLNIIEKYKVCGVIIGLPINM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A L A +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNIVMQFAEEL---AKSINLPIYLQDERLTTKAANNFLKSFGVKRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|157964411|ref|YP_001499235.1| Holliday junction resolvase-like protein [Rickettsia massiliae
MTU5]
gi|157844187|gb|ABV84688.1| Putative endonuclease involved in recombination [Rickettsia
massiliae MTU5]
Length = 165
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + IIGLP +
Sbjct: 31 IAIDYGSKKLGIALSNQERSIAMPLNTITEINTKIVITSLLNIIEKYKVCGVIIGLPINM 90
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A L A +YL DE T+ A + + + G+ + R D
Sbjct: 91 SGAVTEQTNIVMQFAEEL---AKSINLPIYLQDERLTTKAANNFLKSFGVKRKDRNNNDD 147
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 148 AVAASMILE 156
>gi|334341673|ref|YP_004546653.1| Holliday junction resolvase YqgF [Desulfotomaculum ruminis DSM
2154]
gi|334093027|gb|AEG61367.1| Holliday junction resolvase YqgF [Desulfotomaculum ruminis DSM
2154]
Length = 138
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 69/133 (51%), Gaps = 7/133 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLE--LQLLEIAQREETDEFIIGLPKS 121
+G+D+G G+ALS G+ + L V++ + + E +LLEI + + ++GLPK+
Sbjct: 4 MGLDVGDKTIGVALSDPMGWTAQGLEVIRRKNDIQEDFQRLLEIIREYGVESILVGLPKN 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
+G+ PQ KV++ +L E V DE ++ A ++ +S+S R+
Sbjct: 64 MNGTIGPQGEKVQAFVEQL---KKEINLPVKTWDERLSTVAAEKVLLQADVSRSKRKKVI 120
Query: 182 DAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 121 DKMAAAVILQGYL 133
>gi|197284239|ref|YP_002150111.1| holliday junction resolvase [Proteus mirabilis HI4320]
gi|425067135|ref|ZP_18470251.1| YqgF family RNAse H domain-containing protein [Proteus mirabilis
WGLW6]
gi|425073352|ref|ZP_18476458.1| YqgF family RNAse H domain-containing protein [Proteus mirabilis
WGLW4]
gi|226731639|sp|B4EUS0.1|RUVX_PROMH RecName: Full=Putative Holliday junction resolvase
gi|194681726|emb|CAR40879.1| putative holliday junction resolvase [Proteus mirabilis HI4320]
gi|404595330|gb|EKA95875.1| YqgF family RNAse H domain-containing protein [Proteus mirabilis
WGLW4]
gi|404601430|gb|EKB01839.1| YqgF family RNAse H domain-containing protein [Proteus mirabilis
WGLW6]
Length = 139
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+G D G G A+ + RPL K + G Q+ +I + + D ++GLP +
Sbjct: 7 MGFDFGTKSIGAAIGQEVTGTARPLASFKAKDGIPDWSQIEKIIKEWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + + A RL R G ++ L DE ++ EA + G +S + D
Sbjct: 67 DGTEQLVTTQAKKFANRLHGRF---GVQIALHDERLSTVEARAHLFEQGGYRSLDKGSVD 123
Query: 183 AYAAVILLERYF 194
A +AVI+LE +F
Sbjct: 124 ATSAVIILESWF 135
>gi|118597226|sp|Q5NPF1.2|RUVX_ZYMMO RecName: Full=Putative Holliday junction resolvase
Length = 163
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 75/140 (53%), Gaps = 9/140 (6%)
Query: 56 KDSLWRGGFSLGVDLGLSRTGLAL--SKGFCVRPLTVLKLRGEKLELQLL-EIAQREETD 112
+++L R G G+D+G GLAL S+ P ++ + L+L+LL + ++++
Sbjct: 20 QEALPRKGRLAGLDVGTKTIGLALCDSQWIIASPAETIRRKKFTLDLELLRQFVEKQQVK 79
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMG 171
+IGLP + DGS++P++ VR+ A +A + V + DE R S +AV R ++
Sbjct: 80 GLVIGLPLNLDGSDSPRTQSVRAFAKNVAPLSLP----VLMWDE-RWSTKAVTRTLLEAD 134
Query: 172 LSKSARQTKTDAYAAVILLE 191
S++ R D AA +L+
Sbjct: 135 ASRARRSEVVDKMAAAYILQ 154
>gi|225869409|ref|YP_002745357.1| Holliday junction resolvase [Streptococcus equi subsp.
zooepidemicus]
gi|259495714|sp|C0MGB3.1|RUVX_STRS7 RecName: Full=Putative Holliday junction resolvase
gi|225702685|emb|CAX00789.1| putative Holliday junction resolvase [Streptococcus equi subsp.
zooepidemicus]
Length = 139
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 70/138 (50%), Gaps = 13/138 (9%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++K+ +K + +L E+ ++ + D F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIKINEDKQDFGFDRLAELVKQYQVDRFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINMG-LSKSAR 177
+ + + P+ ++ R+ E + V DE T+ EA +I +S+ R
Sbjct: 64 NMNNTSGPRVEASKAYGDRI-----EELFHIPVSYQDERLTTVEAERMLIEQADISRGKR 118
Query: 178 QTKTDAYAAVILLERYFS 195
+ D AA ++L+ Y
Sbjct: 119 KKVIDKLAAQLILQNYLD 136
>gi|67458927|ref|YP_246551.1| Holliday junction resolvase-like protein [Rickettsia felis
URRWXCal2]
gi|75536635|sp|Q4UM37.1|RUVX_RICFE RecName: Full=Putative Holliday junction resolvase
gi|67004460|gb|AAY61386.1| Conserved hypothetical protein [Rickettsia felis URRWXCal2]
Length = 154
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T++++ + + LL I ++ + +IGLP
Sbjct: 20 IAIDYGSKKLGIALSNQERNIAMPLNTIIEINKKIVITSLLSIIEKYKVCGVVIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A L A +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNIVMKFAEEL---AKSINLPIYLQDERLTTKAANNFLKSFGVKRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|420156631|ref|ZP_14663472.1| RNAse H domain protein, YqgF family [Clostridium sp. MSTE9]
gi|394757264|gb|EJF40311.1| RNAse H domain protein, YqgF family [Clostridium sp. MSTE9]
Length = 149
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 43/132 (32%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSW 122
L VDLG +RTGLA+ PL V++ ++L + E AQ ++ ++GLP++
Sbjct: 4 LAVDLGKARTGLAICDEGELLASPLAVVQEHSPDRLCQAIAEAAQAQKAKLLVVGLPRNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE + R+ RL E G V DE T+ A + + R+ D
Sbjct: 64 DGSEGESAQNARAFGARL---EQESGIPVTFCDERGTTITAHNYLNATDTRGKRRKAVVD 120
Query: 183 AYAAVILLERYF 194
A AA I+LE Y
Sbjct: 121 AVAATIILENYL 132
>gi|195978958|ref|YP_002124202.1| Holliday junction resolvase RvuC-like [Streptococcus equi subsp.
zooepidemicus MGCS10565]
gi|195975663|gb|ACG63189.1| putative Holliday junction resolvase RvuC-like [Streptococcus equi
subsp. zooepidemicus MGCS10565]
Length = 136
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 37/140 (26%), Positives = 71/140 (50%), Gaps = 13/140 (9%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++K+ +K + +L E+ ++ + D F+IGLPK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKINEDKQDFGFDRLAELVKQYQVDRFVIGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINMG-LSKSAR 177
+ + + P+ ++ R+ E + V DE T+ EA +I +S+ R
Sbjct: 61 NMNNTSGPRVEASKAYGDRI-----EELFHIPVSYQDERLTTVEAERMLIEQADISRGKR 115
Query: 178 QTKTDAYAAVILLERYFSMS 197
+ D AA ++L+ Y +
Sbjct: 116 KKVIDKLAAQLILQNYLDCN 135
>gi|393773084|ref|ZP_10361483.1| hypothetical protein WSK_2475 [Novosphingobium sp. Rr 2-17]
gi|392721466|gb|EIZ78932.1| hypothetical protein WSK_2475 [Novosphingobium sp. Rr 2-17]
Length = 163
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 50/146 (34%), Positives = 73/146 (50%), Gaps = 21/146 (14%)
Query: 56 KDSLWRGGFSLGVDLGLSRTGLALSKGFC------VRPLTVLKLRG----EKLELQLLEI 105
+D+L + G +G+DLG G+A FC P LK RG +K LQ L I
Sbjct: 18 RDALPQAGALIGLDLGTQTIGVA----FCDAGWRFASPDKTLK-RGKFGADKALLQGL-I 71
Query: 106 AQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVD 165
AQR +IGLP + D SE P+S R+ A LAV G + L DE ++ A
Sbjct: 72 AQRSVCG-IVIGLPLNMDASEGPRSQSSRAYARNLAV----LGLPILLWDERWSTTGAER 126
Query: 166 RMINMGLSKSARQTKTDAYAAVILLE 191
+I +S++ R + D+ AA ++L+
Sbjct: 127 DLIAQDMSRAKRAVRIDSAAAAVILQ 152
>gi|374985134|ref|YP_004960629.1| Holliday junction resolvase-like protein [Streptomyces
bingchenggensis BCW-1]
gi|297155786|gb|ADI05498.1| Holliday junction resolvase-like protein [Streptomyces
bingchenggensis BCW-1]
Length = 154
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G + +D+G +R G+A G P+ + R +L + + E E ++
Sbjct: 1 MRRGRRIAIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAAVVEEYEPIEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR+ A A R A V L+DE T+ A + G++
Sbjct: 61 GLPRSLSGREGPAAAKVRTFAREFARRVAP--VPVRLVDERMTTVTAAQGLRASGVTSKK 118
Query: 177 RQTKTDAYAAVILLERYFSM-------SGQGTEIVL 205
++ D AAV++L+ G+ E+V+
Sbjct: 119 GRSVVDQAAAVVILQSALETERVSGRAPGEAVEVVI 154
>gi|407789905|ref|ZP_11137003.1| Holliday junction resolvase-like protein [Gallaecimonas xiamenensis
3-C-1]
gi|407205727|gb|EKE75695.1| Holliday junction resolvase-like protein [Gallaecimonas xiamenensis
3-C-1]
Length = 138
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 11/135 (8%)
Query: 61 RGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G S+GV +G TG A +PL +K + +L+E +E + D ++GLP
Sbjct: 10 HGAKSIGVAVGQDVTGSA-------QPLAAIKAVDGQPNWELVEKVLKEWQPDLLVVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E + + AGRL R G V DE T+A A + + G + +
Sbjct: 63 LNMDGTEQNTTASAKKFAGRLHGR---FGLEVMTQDERLTTASAKEWLFENGGYSALEKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +A ++LE +F
Sbjct: 120 KIDSVSACLILESWF 134
>gi|399527736|ref|ZP_10767423.1| RNAse H domain protein, YqgF family [Actinomyces sp. ICM39]
gi|398361672|gb|EJN45414.1| RNAse H domain protein, YqgF family [Actinomyces sp. ICM39]
Length = 162
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/154 (29%), Positives = 73/154 (47%), Gaps = 10/154 (6%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFII 116
R G +GVD+G R G++ G P+ L + +L +L +I + E I+
Sbjct: 3 IRRGIRIGVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVCSHDAIEVIV 62
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+ G E + R A R+ + RV ++DE TS +A R+ G+ +
Sbjct: 63 GLPRHLRGGEGISAKGARKYARRIKKLVPD--VRVAMVDERMTSNQAHARLRASGIPEIE 120
Query: 177 RQTKTDAYAAVILLERYFS---MSGQ--GTEIVL 205
++ D AA I+LE+ MSG+ G EI+L
Sbjct: 121 HRSVIDQVAAQIILEQALELERMSGRAPGEEIIL 154
>gi|260912123|ref|ZP_05918679.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
gi|260633729|gb|EEX51863.1| conserved hypothetical protein [Prevotella sp. oral taxon 472 str.
F0295]
Length = 138
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 62/138 (44%), Gaps = 18/138 (13%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L VD G RTG+A++ + ++ + L LL+ Q+EE + ++G PK +G
Sbjct: 5 LSVDYGKKRTGIAVTDPLQIICNGLVTVSSSTLVDFLLDYIQKEEVELIVVGEPKQTNGQ 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWR-------VYLLDEHRTSAEAVDRMINMGLSKSARQ 178
+ +V+ R W+ + DE TS A MI+ GL K ARQ
Sbjct: 65 PSENLERVKQFVAR---------WKKVCPTIPIVYYDERFTSVLAHRAMIDGGLKKKARQ 115
Query: 179 TK--TDAYAAVILLERYF 194
K D +A I+L+ Y
Sbjct: 116 DKALVDEISATIILQSYL 133
>gi|50365281|ref|YP_053706.1| Holliday junction resolvase [Mesoplasma florum L1]
gi|62900971|sp|Q6F101.1|RUVX_MESFL RecName: Full=Putative Holliday junction resolvase
gi|50363837|gb|AAT75822.1| possible Holliday junction resolvase [Mesoplasma florum L1]
Length = 142
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 4/133 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLE--LQLL-EIAQREETDEFIIGLPKSW 122
LG+D+G GLA S G + LK E + LL E + + D F+ G PK+
Sbjct: 5 LGLDVGSKTIGLASSTGNVAKKEINLKFEEWNFEEGVSLLTEFIKDKSFDTFVFGYPKNM 64
Query: 123 DGSETPQSNKVRS-VAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
+GS ++ V + G + + ++ +DE RT+ A MI GLS+ ++
Sbjct: 65 NGSIGERAEMVDYFIEGFMVYNPEIKEEQIIRIDERRTTKMAKSIMIEAGLSRQKQKENK 124
Query: 182 DAYAAVILLERYF 194
D AA ++LE Y
Sbjct: 125 DTLAAQLILETYL 137
>gi|431806327|ref|YP_007233228.1| Putative Holliday junction resolvase [Liberibacter crescens BT-1]
gi|430800302|gb|AGA64973.1| Putative Holliday junction resolvase [Liberibacter crescens BT-1]
Length = 159
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 65/130 (50%), Gaps = 10/130 (7%)
Query: 67 GVDLGLSRTGLALS----KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G+DLG G+++S + RP K + ++ LL A+ E+ FIIGLP +
Sbjct: 21 GIDLGTKTIGMSISDLSQRIASPRPFIKRKKFTQDADI-LLAFAKIEKISAFIIGLPINM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM-INMGLSKSARQTKT 181
+GSE P++ R + E+ ++ + R S A RM INM +S+ + K
Sbjct: 80 NGSEGPRAQATRDFVKNM----NEKTDIPFIFWDERLSTVAAKRMLINMDISRKKQSEKI 135
Query: 182 DAYAAVILLE 191
D+ AA ++L+
Sbjct: 136 DSIAATLILQ 145
>gi|271502145|ref|YP_003335171.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586]
gi|270345700|gb|ACZ78465.1| Holliday junction resolvase YqgF [Dickeya dadantii Ech586]
Length = 143
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLPK 120
G S+GV +G TG A RPLT LK + + Q +E E II GLP
Sbjct: 12 GTRSIGVAIGQEITGTA-------RPLTSLKAQDGIPDWQKVEKLLNEWQPALIIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R + RL R G V L DE ++ EA + G ++ +
Sbjct: 65 NMDGTEQPLTARARKFSQRLQGRF---GVTVELHDERLSTVEARADLFERGGFRALDKGS 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|304440513|ref|ZP_07400400.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii
ATCC BAA-1640]
gi|304370991|gb|EFM24610.1| crossover junction endodeoxyribonuclease [Peptoniphilus duerdenii
ATCC BAA-1640]
Length = 141
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV---RPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG+D+G G+++S C +T+ + +K ++ I ++G+P +
Sbjct: 5 LGLDVGDKYIGVSISDTTCTIASNLVTIRRTSNDKAYEEIEGILNDYNIGTVVVGVPINM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGS+T S ++R A +L + G V DE TS EA +I + + R+ D
Sbjct: 65 DGSDTVMSKRIRKFARKLTPKF---GVEVIFQDERFTSIEAERTLIQSNVRRENRKKYID 121
Query: 183 AYAAVILLERYF 194
AA I+L+ Y
Sbjct: 122 QLAASIILQTYI 133
>gi|51473526|ref|YP_067283.1| Holliday junction resolvase-like protein [Rickettsia typhi str.
Wilmington]
gi|383752300|ref|YP_005427400.1| Holliday junction resolvase-like protein [Rickettsia typhi str.
TH1527]
gi|383843137|ref|YP_005423640.1| Holliday junction resolvase-like protein [Rickettsia typhi str.
B9991CWPP]
gi|62900964|sp|Q68X41.1|RUVX_RICTY RecName: Full=Putative Holliday junction resolvase
gi|51459838|gb|AAU03801.1| possible Holliday junction resolvase [Rickettsia typhi str.
Wilmington]
gi|380758943|gb|AFE54178.1| Holliday junction resolvase-like protein [Rickettsia typhi str.
TH1527]
gi|380759784|gb|AFE55018.1| Holliday junction resolvase-like protein [Rickettsia typhi str.
B9991CWPP]
Length = 156
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALS-KGFCV-RPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS + + PL T+ +L + LL I ++ + +IGLP
Sbjct: 20 IAIDYGSKKIGVALSDQALAIAMPLNTITELNQRVIITSLLNIIEKYQVCGIVIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G T Q+N V A +L + +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGGVTKQTNIVMKFADKLKQSVS---LPIYLQDERLTTKSANNFLKSFGIKRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|336118298|ref|YP_004573067.1| Holliday junction resolvase [Microlunatus phosphovorus NM-1]
gi|334686079|dbj|BAK35664.1| putative Holliday junction resolvase [Microlunatus phosphovorus
NM-1]
Length = 162
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 5/137 (3%)
Query: 60 WRGGFSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117
+R G L +D G +R G+A G P+ + G +++ + E E ++G
Sbjct: 4 FRPGARLALDWGQARIGVAACDPAGTLAYPVEAVPA-GAGAVSRIVGLVAEYEPIEIVVG 62
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
LP+S G E P + VR+ L AA R V L DE T+ A R+ G S +
Sbjct: 63 LPRSLSGGEGPAAATVRTQVSELV--AAVRPLPVRLFDERLTTVTAAQRLRESGRSAKKQ 120
Query: 178 QTKTDAYAAVILLERYF 194
+++ DA AA +LE
Sbjct: 121 RSRIDAAAAAGILEHAL 137
>gi|422822645|ref|ZP_16870838.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK353]
gi|324989653|gb|EGC21597.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK353]
Length = 139
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + +K E +L E+ + + D+F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ R+ A G V DE T+ A +RM+ +S+S R+
Sbjct: 64 NMNNTSGPRVEASQAYGQRI---AELFGLPVDYQDERLTTV-AAERMLVEQADISRSKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|386839013|ref|YP_006244071.1| hypothetical protein SHJG_2924 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|374099314|gb|AEY88198.1| hypothetical protein SHJG_2924 [Streptomyces hygroscopicus subsp.
jinggangensis 5008]
gi|451792305|gb|AGF62354.1| hypothetical protein SHJGH_2688 [Streptomyces hygroscopicus subsp.
jinggangensis TL01]
Length = 154
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 46/159 (28%), Positives = 73/159 (45%), Gaps = 18/159 (11%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R +L ++ + E E +I
Sbjct: 1 MRRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVEEYEPIEVVI 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWR---VYLLDEHRTSAEAVDRMINMGLS 173
GLP+S G E P + KVR+ A LA +G V L+DE T+ A + G+
Sbjct: 61 GLPRSLKGGEGPAAVKVRAFAQELA-----KGIEPVPVRLVDERMTTVTASQGLRASGVK 115
Query: 174 KSARQTKTDAYAAVILLERYF-------SMSGQGTEIVL 205
+ D AAVI+L++ + G+G E+V+
Sbjct: 116 SKKGRAVIDQAAAVIILQQALESERVSGAPPGEGVEVVI 154
>gi|379714025|ref|YP_005302363.1| Holliday junction resolvase-like protein [Rickettsia massiliae str.
AZT80]
gi|376334671|gb|AFB31903.1| Holliday junction resolvase-like protein [Rickettsia massiliae str.
AZT80]
Length = 154
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + IIGLP +
Sbjct: 20 IAIDYGSKKLGIALSNQERSIAMPLNTITEINTKIVITPLLNIIEKYKVCGVIIGLPINM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A L A +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNIVMQFAEEL---AKSINLPIYLQDERLTTKAANNFLKSFGVKRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|320540154|ref|ZP_08039809.1| putative Holliday junction resolvase [Serratia symbiotica str.
Tucson]
gi|320029820|gb|EFW11844.1| putative Holliday junction resolvase [Serratia symbiotica str.
Tucson]
Length = 140
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPK 120
G S+G +G TG A R L K + + Q + ++ Q + D ++GLP
Sbjct: 12 GSKSIGAAIGQELTGSA-------RALAAFKAQSGSPDWQKIAKLLQEWQPDLVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DGSE P + + R A RL R G ++ L DE ++ EA + + G ++ +
Sbjct: 65 NMDGSEQPVTEQARKFANRLHGRF---GVQIALHDERLSTVEARANLFDRGGFRALDKGS 121
Query: 181 TDAYAAVILLERYF 194
D+ +AV++LE +F
Sbjct: 122 VDSASAVVILESWF 135
>gi|34541766|ref|NP_906245.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis
W83]
gi|62901001|sp|Q7MT06.1|RUVX_PORGI RecName: Full=Putative Holliday junction resolvase
gi|34398084|gb|AAQ67144.1| conserved hypothetical protein TIGR00250 [Porphyromonas gingivalis
W83]
Length = 138
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +D G RTGLA++ + P + + L L + RE + F++GLP+
Sbjct: 2 GRILAIDYGRKRTGLAVTDPLKIIPGGLTTVPTHTLLDFLRDYVSREPVERFVLGLPRRM 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
+ E+ +R A +LA A + +DE TS A ++ G+ K R+ K
Sbjct: 62 NYEESESMTYIRPFAVKLA--QAFPSIPITYVDERFTSRMAQRTILEAGIGKMKRRDKAL 119
Query: 181 TDAYAAVILLERYF 194
D +AVI+L+ Y
Sbjct: 120 VDEVSAVIILQSYL 133
>gi|329896502|ref|ZP_08271560.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC3088]
gi|328921719|gb|EGG29092.1| Putative Holliday junction resolvase [gamma proteobacterium
IMCC3088]
Length = 139
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 6/135 (4%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
L D GL + G+A+ PL LK + G QL + + + ++G P +
Sbjct: 5 LCFDYGLRQIGVAVGNAALQTAEPLCTLKAQDGIPNWDQLAALLEEWQPAIVVVGEPSNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+++ + + R A R+ R G +V L DE +S EA + MG ++T D
Sbjct: 65 DGTDSDMAARARKFANRIHGR---FGVKVALADERLSSFEAKQQAREMGHDGDYKKTPID 121
Query: 183 AYAAVILLERYFSMS 197
A AA+I+L+ YF +
Sbjct: 122 ALAAMIILQSYFETA 136
>gi|417575173|ref|ZP_12226026.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii Canada
BC-5]
gi|400205906|gb|EJO36886.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii Canada
BC-5]
Length = 137
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G QLL+I + + D FI+GLP +
Sbjct: 1 MAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGLPLNM 60
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + W ++DE T+ EA + + A++ D
Sbjct: 61 DDSESELSTRARKFARRLRHQTNIETW---MVDERLTTREAREELGFYQEQGRAKKLSAD 117
Query: 183 AYAAVILLERYF 194
++AA +L++ ++
Sbjct: 118 SFAAALLIQSWY 129
>gi|422849926|ref|ZP_16896602.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK115]
gi|325688814|gb|EGD30822.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK115]
Length = 139
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + EK E +L E+ + + D+F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ R+ A G V DE T+ A +RM+ +S++ R+
Sbjct: 64 NMNNTSGPRVEASQAYGQRV---AELFGLPVDYQDERLTTV-AAERMLVEQADISRNKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|392409867|ref|YP_006446474.1| RNAse H-fold protein YqgF [Desulfomonile tiedjei DSM 6799]
gi|390623003|gb|AFM24210.1| RNAse H-fold protein YqgF [Desulfomonile tiedjei DSM 6799]
Length = 143
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG+D+G R G+ALS G+ + + TV E ++ IA+ E +IG+P +
Sbjct: 4 LGLDIGSKRIGVALSDELGYTAQGVETVTYTDPESAADRIQGIAESRNVTEIVIGIPYNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+E PQ VR RL R ++ DE T+ A ++ +S++ R+ D
Sbjct: 64 NGTEGPQVRNVRDFIERLRKRI---NVPIHEWDERLTTFAAERVLLEADISRAKRRKVVD 120
Query: 183 AYAAVILLERYF 194
AAV++L+ +
Sbjct: 121 KLAAVLILQGFL 132
>gi|375091758|ref|ZP_09738046.1| RNAse H-fold protein YqgF [Helcococcus kunzii ATCC 51366]
gi|374562645|gb|EHR33972.1| RNAse H-fold protein YqgF [Helcococcus kunzii ATCC 51366]
Length = 136
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+DLG G+A+S F + L +K + + ++ Q+ +I + E + IIG+P +
Sbjct: 5 IGLDLGTKTIGVAISDPFLMFANGLVTIKRKNVRSDIEQIKKIIEENEITKVIIGMPYNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGS+ P + +V S L E + DE T+ A +I + ++ R+ D
Sbjct: 65 DGSKGPSAQRVMSFVDLL---KKEIDNEIIYEDERLTTVSAERVLIESNVGRNRRKDHID 121
Query: 183 AYAAVILLERYF 194
AA ++L+ Y
Sbjct: 122 KIAAALILQSYL 133
>gi|338737975|ref|YP_004674937.1| Holliday junction resolvase [Hyphomicrobium sp. MC1]
gi|337758538|emb|CCB64363.1| putative Holliday junction resolvase [Hyphomicrobium sp. MC1]
Length = 166
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 56 KDSLWRGGFSLGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEKLELQLLEIAQREETD 112
+D+ G +G+D G GLALS + PL T+ + + +L I
Sbjct: 21 RDATTGAGRLIGIDAGTKTLGLALSDVRRTIASPLETIRRTKFTADAARLFAIVAEHGVS 80
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGL 172
F++GLP++ DG+E P++ R++A L + + L DE T+AEA +I+
Sbjct: 81 GFVLGLPRNLDGTEGPRAQATRALARNLNKLSP---LPILLWDERLTTAEAERMLIDADQ 137
Query: 173 SKSARQTKTDAYAAVILLE 191
++ R D AA I+L+
Sbjct: 138 TRKRRAAVIDKLAATIILQ 156
>gi|253990752|ref|YP_003042108.1| conserved hypothetical protein [Photorhabdus asymbiotica]
gi|211639083|emb|CAR67695.1| Putative Holliday junction resolvase [Photorhabdus asymbiotica
subsp. asymbiotica ATCC 43949]
gi|253782202|emb|CAQ85366.1| conserved hypothetical protein [Photorhabdus asymbiotica]
Length = 139
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/134 (34%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+G +G TG A R LT K Q +E +E + D I+GLP
Sbjct: 12 GTRSIGAAIGQEITGTA-------RALTSFKATDGIPNWQQIEKLLKEWQPDLVIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E + + R A RL R G +V L DE T+ EA + + G K+ + K
Sbjct: 65 NMDGTEQFVTIQARKFANRLHGRF---GVQVELQDERLTTVEARAHLFDRGGYKALDKGK 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDATSAVIILESWF 135
>gi|403738210|ref|ZP_10950938.1| putative Holliday junction resolvase [Austwickia chelonae NBRC
105200]
gi|403192322|dbj|GAB77708.1| putative Holliday junction resolvase [Austwickia chelonae NBRC
105200]
Length = 163
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 67/140 (47%), Gaps = 6/140 (4%)
Query: 61 RGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLK--LRGEKLELQLLEIAQREETDEFII 116
R G +GVD+G +R G+A+ G P+ + L GEK ++ E+ E E ++
Sbjct: 2 RPGRRVGVDVGQARVGVAICDPDGLIATPVESVTRDLNGEKDLDRVAELCTEFEAVEVVV 61
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP S G E + R A RLA R R V L+DE T+ +A + + G
Sbjct: 62 GLPLSLSGVEGSAAVAAREYARRLASRV--RPVPVRLVDERLTTVDAHRSLRDAGRGTRT 119
Query: 177 RQTKTDAYAAVILLERYFSM 196
++ D +AV++L+ +
Sbjct: 120 HRSVIDQQSAVLILQTALDI 139
>gi|401682845|ref|ZP_10814735.1| RNAse H domain protein, YqgF family [Streptococcus sp. AS14]
gi|400184085|gb|EJO18332.1| RNAse H domain protein, YqgF family [Streptococcus sp. AS14]
Length = 136
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + EK E +L E+ + + D+F+IGLPK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ R+ + G V DE T+ A +RM+ +S+S R+
Sbjct: 61 NMNNTSGPRVEASQAYGQRV---SELFGLPVDYQDERLTTV-AAERMLVEQADISRSKRK 116
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 117 KVIDKLAAQLILQNYL 132
>gi|294139818|ref|YP_003555796.1| Holliday junction resolvase [Shewanella violacea DSS12]
gi|293326287|dbj|BAJ01018.1| putative Holliday junction resolvase [Shewanella violacea DSS12]
Length = 140
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLK-LRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + P+ +K + G ++ + + + D ++GLP +
Sbjct: 7 LGFDYGTKSIGIAIGQSLTGTANPIGSIKAVDGIPKWEEIGMLIEEWQPDMVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + + A R+ R G ++ DE T+A+A R+ +G K+ + + D
Sbjct: 67 DGTEQEITQRAKKFANRIKGR---FGVKIATQDERLTTADAKARLFELGGYKALTKGQVD 123
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 124 AMSAVLIIESYF 135
>gi|403674700|ref|ZP_10936934.1| Holliday junction resolvase-like protein [Acinetobacter sp. NCTC
10304]
gi|421651090|ref|ZP_16091462.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC0162]
gi|421655275|ref|ZP_16095599.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-72]
gi|425749343|ref|ZP_18867323.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-348]
gi|408509102|gb|EKK10778.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC0162]
gi|408509412|gb|EKK11087.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-72]
gi|425489416|gb|EKU55728.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-348]
Length = 146
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G QLL+I + + D FI+GLP +
Sbjct: 10 MAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGLPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + W ++DE T+ EA + + A++ D
Sbjct: 70 DDSESELSTRARKFARRLRHQTNIETW---MIDERLTTREAREELGFYQEQGRAKKLSAD 126
Query: 183 AYAAVILLERYF 194
++AA +L++ ++
Sbjct: 127 SFAAALLIQSWY 138
>gi|326780492|ref|ZP_08239757.1| Holliday junction resolvase YqgF [Streptomyces griseus XylebKG-1]
gi|326660825|gb|EGE45671.1| Holliday junction resolvase YqgF [Streptomyces griseus XylebKG-1]
Length = 154
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 69/156 (44%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L VD+G +R G+A G P+ + R +L +I E E ++
Sbjct: 1 MRRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPIEVVL 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR A A A V L+DE T+ A M G+
Sbjct: 61 GLPRSLGGGEGPAAAKVREFAQVFARSIAP--VPVRLVDERMTTVTAAQGMRASGVKSKK 118
Query: 177 RQTKTDAYAAVILLERYF-------SMSGQGTEIVL 205
++ D AAV++L+ + G+G E+V+
Sbjct: 119 GRSVIDQAAAVVILQNALESERASGNPPGEGVEVVV 154
>gi|32130021|sp|Q89K24.1|RUVX_BRAJA RecName: Full=Putative Holliday junction resolvase
Length = 161
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 9/135 (6%)
Query: 61 RGGFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117
RGG +G+DLG G+A+S + T+ + ++ +LL IA + F++G
Sbjct: 18 RGGL-VGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAIAAERKVVGFVLG 76
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSA 176
LP + DGSE P++ R+ A LA + L DE R S AV+R +I M +S++
Sbjct: 77 LPINMDGSEGPRAQSTRAFARNLANLTT---LPIGLWDE-RLSTAAVERELIGMDVSRAK 132
Query: 177 RQTKTDAYAAVILLE 191
R D +AA+ +L+
Sbjct: 133 RAEVIDEHAAIFILQ 147
>gi|227888703|ref|ZP_04006508.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
ATCC 33200]
gi|227850730|gb|EEJ60816.1| crossover junction endodeoxyribonuclease [Lactobacillus johnsonii
ATCC 33200]
Length = 143
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/148 (28%), Positives = 73/148 (49%), Gaps = 28/148 (18%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G + L +K+ K Q+ +I ++ + + F++GLPK
Sbjct: 4 LGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGLRQIRKIVRKYDVEGFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWR--------VYLLDEHRTSAEAVDRMI--NM 170
+ DGS +GR R+ + G R VY +DE T+ +A DR++
Sbjct: 64 NMDGS-----------SGRSVERSKQYGERLKEKFDLPVYYMDERLTTVQA-DRILVEEA 111
Query: 171 GL-SKSARQTKTDAYAAVILLERYFSMS 197
G+ + R+ D AAV++L+ Y +
Sbjct: 112 GVHDRVERKKVIDQMAAVLILQNYLEAT 139
>gi|227875428|ref|ZP_03993569.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35243]
gi|227843982|gb|EEJ54150.1| possible Holliday junction resolvase [Mobiluncus mulieris ATCC
35243]
Length = 145
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 70/139 (50%), Gaps = 5/139 (3%)
Query: 68 VDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFI-IGLPKSWDG 124
+D+G R G+A + P+ LK++ + EL+ L REET + +GLP+ +G
Sbjct: 1 MDVGKVRVGIAQAYLDTILALPVKTLKVQADGSELEELASFIREETTTAVFVGLPRLLNG 60
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
E + RS A RLA + + V L+DE +S A +++ G+S + D
Sbjct: 61 KEGEAARMARSYARRLARKISP--IPVRLIDERLSSVTAHEKLRAAGVSTREHKKMVDQV 118
Query: 185 AAVILLERYFSMSGQGTEI 203
AA +LE+ MS GT++
Sbjct: 119 AAQQILEQAIEMSNIGTDL 137
>gi|326798192|ref|YP_004316011.1| Holliday junction resolvase [Sphingobacterium sp. 21]
gi|326548956|gb|ADZ77341.1| Holliday junction resolvase [Sphingobacterium sp. 21]
Length = 137
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
+ D G R G+A++ + + + + + L + +E+ + F++G+PK DGS
Sbjct: 4 MAFDYGTKRIGVAVTDPLQIIATALTTIHPKDVIEYLKKYVSQEQVESFVVGMPKQLDGS 63
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
++ + V+ L + + + +DE TS A + GL +S RQ K DA
Sbjct: 64 DSQSAVHVKGFINLL--KKSFPQMPIVTMDERFTSKMASASIAESGLRRSKRQEKGLVDA 121
Query: 184 YAAVILLERYF 194
+AVI+L+ Y
Sbjct: 122 ISAVIILQDYL 132
>gi|323350688|ref|ZP_08086349.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
VMC66]
gi|422847739|ref|ZP_16894422.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK72]
gi|422879885|ref|ZP_16926350.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1059]
gi|422883127|ref|ZP_16929576.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK49]
gi|422929730|ref|ZP_16962671.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
ATCC 29667]
gi|422932697|ref|ZP_16965628.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK340]
gi|322123108|gb|EFX94799.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
VMC66]
gi|325686737|gb|EGD28763.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK72]
gi|332363719|gb|EGJ41499.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK49]
gi|332365296|gb|EGJ43059.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1059]
gi|339614323|gb|EGQ19025.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
ATCC 29667]
gi|339618448|gb|EGQ23046.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK340]
Length = 139
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + EK E +L E+ + + D+F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGEFGLERLGELVKEYKVDKFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ R+ + G V DE T+ A +RM+ +S+S R+
Sbjct: 64 NMNNTSGPRVEASQAYGQRV---SELFGLPVDYQDERLTTV-AAERMLVEQADISRSKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|239500946|ref|ZP_04660256.1| hypothetical protein AbauAB_01395 [Acinetobacter baumannii AB900]
gi|421677347|ref|ZP_16117239.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC111]
gi|410393103|gb|EKP45457.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC111]
Length = 146
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G QLL+I + + D FI+GLP +
Sbjct: 10 MAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWNQLLKIVKEWQPDLFIVGLPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + W ++DE T+ EA + + A++ D
Sbjct: 70 DDSESELSTRARKFARRLRHQTNIETW---MVDERLTTREAREELGFYQEQGRAKKLSAD 126
Query: 183 AYAAVILLERYF 194
++AA +L++ ++
Sbjct: 127 SFAAALLIQSWY 138
>gi|182439828|ref|YP_001827547.1| Holliday junction resolvase-like protein [Streptomyces griseus
subsp. griseus NBRC 13350]
gi|178468344|dbj|BAG22864.1| conserved hypothetical protein [Streptomyces griseus subsp. griseus
NBRC 13350]
Length = 161
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 46/158 (29%), Positives = 70/158 (44%), Gaps = 12/158 (7%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEF 114
+ R G L VD+G +R G+A G P+ + R +L +I E E
Sbjct: 6 TAMRRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQIVDEYEPIEV 65
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSK 174
++GLP+S G E P + KVR A A A V L+DE T+ A M G+
Sbjct: 66 VLGLPRSLGGGEGPAAAKVREFAQVFARSIAP--VPVRLVDERMTTVTAAQGMRASGVKS 123
Query: 175 SARQTKTDAYAAVILLERYF-------SMSGQGTEIVL 205
++ D AAV++L+ + G+G E+V+
Sbjct: 124 KKGRSVIDQAAAVVILQNALESERASGNPPGEGVEVVV 161
>gi|385809961|ref|YP_005846357.1| endonuclease [Ignavibacterium album JCM 16511]
gi|383802009|gb|AFH49089.1| Putative endonuclease [Ignavibacterium album JCM 16511]
Length = 143
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 66 LGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D GL R G+ALS K F P T L+ EKL L +I Q + ++ I+GLP
Sbjct: 10 MAIDFGLKRIGIALSDPLKKFA-SPFTTLR-NDEKLFHNLKKIIQEKAVEKIILGLPDKS 67
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
D S V L + + + +E TS A R+I+ SK RQ K
Sbjct: 68 DDSTKSVYKNVLEFKSEL---EKQFNLEIIMWNETHTSRIAEQRIIDSVKSKKKRQDKGL 124
Query: 181 TDAYAAVILLERYF 194
D ++A I+L Y
Sbjct: 125 IDMHSAAIILSEYL 138
>gi|345010674|ref|YP_004813028.1| Holliday junction resolvase [Streptomyces violaceusniger Tu 4113]
gi|344037023|gb|AEM82748.1| Holliday junction resolvase [Streptomyces violaceusniger Tu 4113]
Length = 154
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G + +D+G +R G+A G P+ + R +L + + E E ++
Sbjct: 1 MRRGRRIAIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHKRLAALVEEYEPLEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR+ A LA R A V L+DE T+ A + G++
Sbjct: 61 GLPRSLSGREGPAAAKVRTFARELARRVAP--VPVRLVDERMTTVTASQGLRASGVTSKK 118
Query: 177 RQTKTDAYAAVILLERYFSM-------SGQGTEIVL 205
++ D AAV++L+ G+ E+V+
Sbjct: 119 GRSVVDQAAAVVILQSALETERVSGRAPGEAVEVVI 154
>gi|34580618|ref|ZP_00142098.1| hypothetical protein [Rickettsia sibirica 246]
gi|238651062|ref|YP_002916919.1| Holliday junction resolvase-like protein [Rickettsia peacockii str.
Rustic]
gi|383483796|ref|YP_005392709.1| Holliday junction resolvase-like protein [Rickettsia parkeri str.
Portsmouth]
gi|259495713|sp|C4K2S0.1|RUVX_RICPU RecName: Full=Putative Holliday junction resolvase
gi|28262003|gb|EAA25507.1| unknown [Rickettsia sibirica 246]
gi|238625160|gb|ACR47866.1| Holliday junction resolvase-like protein [Rickettsia peacockii str.
Rustic]
gi|378936150|gb|AFC74650.1| Holliday junction resolvase-like protein [Rickettsia parkeri str.
Portsmouth]
Length = 154
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + IIGLP
Sbjct: 20 IAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLLNIIEKYKVCGVIIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A LA +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNIVMKFAEELA---KSINLPIYLQDERLTTKAANNLLKSFGVKRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|239947537|ref|ZP_04699290.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
scapularis]
gi|239921813|gb|EER21837.1| conserved hypothetical protein [Rickettsia endosymbiont of Ixodes
scapularis]
Length = 156
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + +IGLP
Sbjct: 20 IAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLLNIIEKYKVCGVVIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A LA + VYL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNIVMKFAEELA-ESINLPIPVYLQDERLTTKAANNFLKSFGVKRKDRNNNDD 138
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 139 AVAASMILE 147
>gi|399064857|ref|ZP_10747649.1| RNAse H-fold protein YqgF [Novosphingobium sp. AP12]
gi|398030306|gb|EJL23725.1| RNAse H-fold protein YqgF [Novosphingobium sp. AP12]
Length = 169
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 69/137 (50%), Gaps = 14/137 (10%)
Query: 61 RGGFSLGVDLGLSRTGLALSKGF--CVRPLTVLKLRG----EKLELQLLEIAQREETDEF 114
RGG +G+DLG G A + P LK RG +K +Q E+ +
Sbjct: 30 RGGL-MGLDLGTQTIGTAFADAGWRIASPGKTLK-RGKFGADKALMQ--ELIRERSIKGI 85
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSK 174
+IGLP + DGSE P++ R+ A LAV G + L DE ++ A +I+ +S+
Sbjct: 86 VIGLPLNMDGSEGPRAQSSRAYARNLAV----LGLPILLWDERWSTTSAERGLIDQDMSR 141
Query: 175 SARQTKTDAYAAVILLE 191
+ R T+ D+ AA ++L+
Sbjct: 142 AKRATRIDSAAAAVILQ 158
>gi|27380205|ref|NP_771734.1| Holliday junction resolvase-like protein [Bradyrhizobium japonicum
USDA 110]
gi|27353359|dbj|BAC50359.1| blr5094 [Bradyrhizobium japonicum USDA 110]
Length = 167
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/135 (32%), Positives = 71/135 (52%), Gaps = 9/135 (6%)
Query: 61 RGGFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117
RGG +G+DLG G+A+S + T+ + ++ +LL IA + F++G
Sbjct: 24 RGGL-VGLDLGTKTIGVAVSNPDRRLATGVETIQRKAFKQDAARLLAIAAERKVVGFVLG 82
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSA 176
LP + DGSE P++ R+ A LA + L DE R S AV+R +I M +S++
Sbjct: 83 LPINMDGSEGPRAQSTRAFARNLANLTT---LPIGLWDE-RLSTAAVERELIGMDVSRAK 138
Query: 177 RQTKTDAYAAVILLE 191
R D +AA+ +L+
Sbjct: 139 RAEVIDEHAAIFILQ 153
>gi|444376421|ref|ZP_21175665.1| Putative Holliday junction resolvase [Enterovibrio sp. AK16]
gi|443679399|gb|ELT86055.1| Putative Holliday junction resolvase [Enterovibrio sp. AK16]
Length = 143
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQREET-DEFIIGLPKSW 122
LG D G G+A+ + RPL LK + + +E+ +E T D ++GLP
Sbjct: 8 LGFDYGTKSIGVAIGQAITGTARPLKALKAKDGIPSWEAIEVILKEWTPDLVVVGLPLDL 67
Query: 123 DGSETPQ-SNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
G E + + R A RL R G V L DE T+AEA + G K+ + +
Sbjct: 68 HGGELETITPRARKFANRLKGRF---GVNVELHDERLTTAEARSSLFEYGGYKALGKGEI 124
Query: 182 DAYAAVILLERYF 194
D+ +AVI++E +F
Sbjct: 125 DSQSAVIIVESWF 137
>gi|422853265|ref|ZP_16899929.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK160]
gi|325697277|gb|EGD39163.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK160]
Length = 139
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + +K E +L E+ + + D+F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ R+ A G V DE T+ A +RM+ +S+S R+
Sbjct: 64 NMNNTSGPRVEASQAYGQRV---AELFGLPVDYQDERLTTV-AAERMLVEQADISRSKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|436838529|ref|YP_007323745.1| Holliday junction resolvase YqgF [Fibrella aestuarina BUZ 2]
gi|384069942|emb|CCH03152.1| Holliday junction resolvase YqgF [Fibrella aestuarina BUZ 2]
Length = 137
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
+ +D G RTGLA++ + + + L +L A E + F++G P + DGS
Sbjct: 5 VAIDYGNKRTGLAVTDPLQLIATALETVPTHTLIDRLKAYAAAEPVEGFVVGWPTNTDGS 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+T + VR + +L E+ VY DE TS A+ MI G SK R+ K D
Sbjct: 65 DTDTTAAVRGLIKKLKTVFPEQ--TVYQHDERFTSRMALQAMIAGGTSKKDRRQKGAIDM 122
Query: 184 YAAVILLERYF 194
+A I+L+ +
Sbjct: 123 VSATIILQSFM 133
>gi|188995932|ref|YP_001930184.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis
ATCC 33277]
gi|334148004|ref|YP_004510933.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis
TDC60]
gi|188595612|dbj|BAG34587.1| probable endonuclease [Porphyromonas gingivalis ATCC 33277]
gi|333805160|dbj|BAK26367.1| Holliday junction resolvase-like protein [Porphyromonas gingivalis
TDC60]
Length = 150
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +D G RTGLA++ + P + + L L + RE + F++GLP+
Sbjct: 14 GRILAIDYGRKRTGLAVTDPLKIIPGGLTTVPTHTLLDFLRDYVSREPVERFVLGLPRRM 73
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
+ E+ +R A +LA A + +DE TS A ++ G+ K R+ K
Sbjct: 74 NYEESESMTYIRPFAVKLA--QAFPSIPITYVDERFTSRMAQRTILEAGIGKMKRRDKAL 131
Query: 181 TDAYAAVILLERYF 194
D +AVI+L+ Y
Sbjct: 132 VDEVSAVIILQSYL 145
>gi|388256299|ref|ZP_10133480.1| hypothetical protein O59_000570 [Cellvibrio sp. BR]
gi|387939999|gb|EIK46549.1| hypothetical protein O59_000570 [Cellvibrio sp. BR]
Length = 140
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/94 (34%), Positives = 52/94 (55%), Gaps = 3/94 (3%)
Query: 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160
Q+ ++ Q + D ++GLP + DGSE+ S + R A RL R G +V L+DE +S
Sbjct: 45 QIEKLLQEWQPDLVLVGLPLNMDGSESELSTRARKFANRLHGRF---GVKVELVDERLSS 101
Query: 161 AEAVDRMINMGLSKSARQTKTDAYAAVILLERYF 194
EA ++ G S+ + D+ AA ++LE +F
Sbjct: 102 FEAKGEVMEQGGSRHYKHNPVDSIAARLILESWF 135
>gi|345893034|ref|ZP_08843842.1| hypothetical protein HMPREF1022_02502 [Desulfovibrio sp.
6_1_46AFAA]
gi|345046662|gb|EGW50543.1| hypothetical protein HMPREF1022_02502 [Desulfovibrio sp.
6_1_46AFAA]
Length = 172
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/137 (31%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLL-EIAQR---EETDEFIIGLP 119
+G+D GL+RTGLA+S +G PL L+L L +A R E+ + ++GLP
Sbjct: 31 VGIDYGLARTGLAVSDPEGRLAFPLVTLRLEEYPNRKDFLAALAARITAEKAEAVVMGLP 90
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
DG+++ + +VR+V RL R V+ + E +S EA + + GL+ R+
Sbjct: 91 LLDDGTDSLTTRQVRNVTERLKRRV---DLPVFYMPELLSSEEAWSDLRDAGLTARKRKA 147
Query: 180 KTDAYAAVILLERYFSM 196
D AAV +L + ++
Sbjct: 148 VLDQQAAVRILASFLAL 164
>gi|374579531|ref|ZP_09652625.1| RNAse H-fold protein YqgF [Desulfosporosinus youngiae DSM 17734]
gi|374415613|gb|EHQ88048.1| RNAse H-fold protein YqgF [Desulfosporosinus youngiae DSM 17734]
Length = 137
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSWDG 124
+G+D G G+A+S V +R K E+ +L E+ + E E IIG PK+ +G
Sbjct: 4 MGLDFGSKTIGVAMSDSLFWTAQGVKTIRRSKKEIDELRELIREYEVMEIIIGYPKNMNG 63
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
+ P+ A V +E G V L DE ++ A +I +S++ R+ D
Sbjct: 64 TLGPRCALTEEFA---EVLRSEFGLEVKLWDERLSTVAAQRSLIQADVSRAKRKNVIDKM 120
Query: 185 AAVILLERYF 194
AAV +L+ Y
Sbjct: 121 AAVFILQGYL 130
>gi|251788140|ref|YP_003002861.1| Holliday junction resolvase-like protein [Dickeya zeae Ech1591]
gi|247536761|gb|ACT05382.1| Holliday junction resolvase YqgF [Dickeya zeae Ech1591]
Length = 143
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/134 (33%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RPLT LK + + Q +E E + I+GLP
Sbjct: 12 GTRSIGVAIGQEITGTA-------RPLTSLKAQDGIPDWQKVEKLLNEWQPALVIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R + RL R G V L DE ++ EA + G ++ +
Sbjct: 65 NMDGTEQPLTARARKFSQRLHGRF---GVNVELHDERLSTVEARADLFERGGFRALDKGS 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|417547140|ref|ZP_12198226.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC032]
gi|421666162|ref|ZP_16106254.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC087]
gi|421670889|ref|ZP_16110871.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC099]
gi|400385028|gb|EJP43706.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC032]
gi|410383186|gb|EKP35719.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC099]
gi|410388087|gb|EKP40526.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC087]
Length = 146
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G QLL+I + + D FI+GLP +
Sbjct: 10 MAFDFGTQKMGMAIGQSTIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGLPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + W ++DE T+ EA + + A++ D
Sbjct: 70 DDSESELSTRARKFARRLRHQTNIETW---MVDERLTTREAREELGFYQEQGRAKKLSAD 126
Query: 183 AYAAVILLERYF 194
++AA +L++ ++
Sbjct: 127 SFAAALLIQSWY 138
>gi|359143849|ref|ZP_09178064.1| Holliday junction resolvase-like protein [Streptomyces sp. S4]
Length = 155
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 59 LWRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFI 115
+ R G L VD+G +R G+A G P+ + R +L + + E E +
Sbjct: 1 MLRRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLAALVEEYEPIEVV 60
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
+GLP+S G E P + KVR A LA A V L+DE ++ A M G+
Sbjct: 61 VGLPRSLKGGEGPAAVKVRGFAQELARTIAP--VPVRLVDERMSTVTAAQGMRASGVRSK 118
Query: 176 ARQTKTDAYAAVILLERYF-------SMSGQGTEIVL 205
+ D AAV++L+ G+G E+V+
Sbjct: 119 KGRAVIDQAAAVVILQSALESERASGDAPGEGVEVVI 155
>gi|269792642|ref|YP_003317546.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans
DSM 6589]
gi|269100277|gb|ACZ19264.1| Holliday junction resolvase YqgF [Thermanaerovibrio acidaminovorans
DSM 6589]
Length = 142
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 71/137 (51%), Gaps = 9/137 (6%)
Query: 63 GFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLP 119
G + +DLG R G+ALS + F PL VLK+ E L++ E+ +R ++GLP
Sbjct: 6 GRVMALDLGEVRIGVALSDPSRSFA-SPLEVLKME-EGWPLKVKELVERNSVTLIVVGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRL-AVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
DGS P+ V+ V G L ++A + + +DE T++ A ++ + + R+
Sbjct: 64 IRTDGSSGPE---VQRVMGWLEELKAVVQQVEIVTVDERFTTSIAQRFLLEGDVRREKRK 120
Query: 179 TKTDAYAAVILLERYFS 195
K D AA ++L+ Y +
Sbjct: 121 GKVDKVAAALMLQDYLN 137
>gi|405983768|ref|ZP_11042073.1| YqgF family RNAse H domain-containing protein [Slackia piriformis
YIT 12062]
gi|404388583|gb|EJZ83665.1| YqgF family RNAse H domain-containing protein [Slackia piriformis
YIT 12062]
Length = 141
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 65 SLGVDLGLSRTGLALS--KGFCVRPLTVLK---LRGEKLELQLLEIAQREETDEFIIGLP 119
++ +D+G R G+A+S +G PL VL + G+ E + L Q E ++ + GLP
Sbjct: 3 TMALDIGEVRIGVAISDSEGRIATPLKVLAASDVLGDGAEFRRL--VQDWEVEQLLCGLP 60
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ G E PQ+ ++ A R+A RA R ++ DE +S EA + GL + A +
Sbjct: 61 YTLSGEEGPQAASIKEKASRIA-RA--RNLPLFFADERMSSREAKRILREEGLDERAMRG 117
Query: 180 KTDAYAAVILLERYF 194
K D AA + L+ +
Sbjct: 118 KVDMIAASLFLQAWL 132
>gi|229586597|ref|YP_002845098.1| Holliday junction resolvase-like protein [Rickettsia africae ESF-5]
gi|259495712|sp|C3PN45.1|RUVX_RICAE RecName: Full=Putative Holliday junction resolvase
gi|228021647|gb|ACP53355.1| Putative endonuclease involved in recombination [Rickettsia africae
ESF-5]
Length = 154
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + IIGLP
Sbjct: 20 IAIDYGSKKLGIALSNQELSIAMPLNTITEINKKIVITSLLNIIEKYKVCGVIIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A LA +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNIVMKFAEELA---KSINLPIYLQDERLTTKAANNLLKSFGVKRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|15892378|ref|NP_360092.1| Holliday junction resolvase-like protein [Rickettsia conorii str.
Malish 7]
gi|32130054|sp|Q92IG5.1|RUVX_RICCN RecName: Full=Putative Holliday junction resolvase
gi|15619527|gb|AAL02993.1| unknown [Rickettsia conorii str. Malish 7]
Length = 154
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + IIGLP
Sbjct: 20 IAIDYGNKKLGIALSNQERSIAMPLNTITEINKKIVITSLLNIIEKYKVCGVIIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A LA +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNIVMKFAEELA---KSINLPIYLQDERLTTKAANNLLKSFGVKRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|421739498|ref|ZP_16177806.1| RNAse H-fold protein YqgF [Streptomyces sp. SM8]
gi|406692134|gb|EKC95847.1| RNAse H-fold protein YqgF [Streptomyces sp. SM8]
Length = 158
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 12/157 (7%)
Query: 59 LWRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFI 115
+ R G L VD+G +R G+A G P+ + R + +L + + E E +
Sbjct: 4 VLRRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAQRRLAALVEEYEPIEVV 63
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
+GLP+S G E P + KVR A LA A V L+DE ++ A M G+
Sbjct: 64 VGLPRSLKGGEGPAAVKVRGFAQELARTIAP--VPVRLVDERMSTVTAAQGMRASGVRSK 121
Query: 176 ARQTKTDAYAAVILLERYF-------SMSGQGTEIVL 205
+ D AAV++L+ G+G E+V+
Sbjct: 122 KGRAVIDQAAAVVILQSALESERASGDAPGEGVEVVI 158
>gi|163749444|ref|ZP_02156692.1| Holliday junction resolvase-like protein [Shewanella benthica KT99]
gi|161330853|gb|EDQ01780.1| Holliday junction resolvase-like protein [Shewanella benthica KT99]
Length = 140
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLK-LRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G G+A+ + P+ +K + G ++ + + + D ++GLP +
Sbjct: 7 LGFDYGTKSIGIAIGQSLTGTGNPIGSIKAVDGIPKWEEIGMLIEEWQPDIVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + + A R+ R G ++ DE T+A+A R+ +G K+ + + D
Sbjct: 67 DGTEQEMTQRAKKFANRIKGRF---GVKIATQDERLTTADAKARLFELGGYKALTKGQVD 123
Query: 183 AYAAVILLERYF 194
A +AV+++E YF
Sbjct: 124 AMSAVLIIESYF 135
>gi|381395529|ref|ZP_09921226.1| holliday junction resolvase-like protein/crossover junction
endodeoxyribonuclease [Glaciecola punicea DSM 14233 =
ACAM 611]
gi|379328758|dbj|GAB56359.1| holliday junction resolvase-like protein/crossover junction
endodeoxyribonuclease [Glaciecola punicea DSM 14233 =
ACAM 611]
Length = 144
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 6/131 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G+ GLA+ + PL +K + G L +I + E D ++GLP +
Sbjct: 13 IAFDFGMKSIGLAVGQAITNTASPLQAIKAQDGIPNWENLAKIISQWEPDGLLVGLPLNM 72
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P + V+ GRL + V+L DE ++ +A ++ +G K + K D
Sbjct: 73 DGTEQPITASVKRFVGRLKHK---YNLPVFLHDERLSTVDAKAKLFELGGYKKLSKEKVD 129
Query: 183 AYAAVILLERY 193
+ +A ++ E +
Sbjct: 130 SVSACLIYESW 140
>gi|444910706|ref|ZP_21230886.1| Putative Holliday junction resolvase [Cystobacter fuscus DSM 2262]
gi|444718907|gb|ELW59713.1| Putative Holliday junction resolvase [Cystobacter fuscus DSM 2262]
Length = 153
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKS 121
+LG+D+G G+A+S G + +T ++ K +L L+ + + E F++GLP +
Sbjct: 3 TLGLDVGTKTIGVAVSDPLGLTAQTVTTIRRSNLKADLAALKALVEEYEAQAFVVGLPLN 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DGSE P++ R + V G V L DE ++ A ++ LS++ R+
Sbjct: 63 MDGSEGPRAEATRKF---VDVLTQTFGLPVELCDERLSTVAAQRTLLEADLSRAKRREVI 119
Query: 182 DAYAAVILLERYF 194
D AA +L+ +
Sbjct: 120 DQMAAQFILQGWL 132
>gi|435854731|ref|YP_007316050.1| RNAse H-fold protein YqgF [Halobacteroides halobius DSM 5150]
gi|433671142|gb|AGB41957.1| RNAse H-fold protein YqgF [Halobacteroides halobius DSM 5150]
Length = 135
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKSW 122
+G+D+G RTG+A+S G+ + T+++ + +L + + + ++ ++GLPK+
Sbjct: 4 MGLDVGDKRTGVAVSDPLGWTAQGKTIVEEESSQEKLDYIASLIDKYNVEKVVVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P++ KV S +L V DE ++ A +I+ LS+ R+ D
Sbjct: 64 NGTIGPRAQKVLSFVDKL---KETIDLPVITWDERLSTKAAEKTLIDADLSRKKRKKVID 120
Query: 183 AYAAVILLERYF 194
AAV++L+ Y
Sbjct: 121 KMAAVVILQNYL 132
>gi|398788502|ref|ZP_10550654.1| Holliday junction resolvase-like protein [Streptomyces auratus
AGR0001]
gi|396992063|gb|EJJ03180.1| Holliday junction resolvase-like protein [Streptomyces auratus
AGR0001]
Length = 154
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G + VD+G +R G+A G P+ + R +L I + E E ++
Sbjct: 1 MRRGRRIAVDVGDARIGVASCDPDGVLATPVETVPGRDVPSAHRRLKAIVEEYEPLEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR+ A LA A G R L+DE ++ A + G+
Sbjct: 61 GLPRSLHGGEGPAAAKVRAFAQELARNIAPVGVR--LVDERMSTVTATQGLRASGVRSKK 118
Query: 177 RQTKTDAYAAVILLERYF-------SMSGQGTEIVL 205
++ D AAV++L+ + G+ E+V+
Sbjct: 119 GRSVVDQAAAVVILQSALETERVSGAPPGESVEVVI 154
>gi|357038685|ref|ZP_09100482.1| Holliday junction resolvase [Desulfotomaculum gibsoniae DSM 7213]
gi|355359477|gb|EHG07239.1| Holliday junction resolvase [Desulfotomaculum gibsoniae DSM 7213]
Length = 138
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 73/133 (54%), Gaps = 7/133 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPL-TVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKS 121
+G+D G + G+A+S G+ + + T+++ G + +L ++ IAQ+ E ++ ++GLP++
Sbjct: 4 MGIDFGDRKIGIAVSDLLGWTAQGVDTIVRQAGLEKDLDKIKAIAQKYEVEKIVVGLPRN 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG+ Q KV + A ++ G V DE ++ A +I+ +S+S R+
Sbjct: 64 MDGTTGAQGAKVLAFADQV---HRHLGLPVETWDERLSTVAAERLLISADVSRSKRRKVI 120
Query: 182 DAYAAVILLERYF 194
D AA I+L+ Y
Sbjct: 121 DKMAASIILQGYL 133
>gi|239827825|ref|YP_002950449.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
gi|259495706|sp|C5D4Z1.1|RUVX_GEOSW RecName: Full=Putative Holliday junction resolvase
gi|239808118|gb|ACS25183.1| Holliday junction resolvase YqgF [Geobacillus sp. WCH70]
Length = 138
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 10/135 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKL---RGEKLELQLLEIAQREETDEFIIGLPK 120
LG+DLG G+A+S G+ + + + + RGE +L EI E D ++G PK
Sbjct: 4 LGLDLGTKTLGVAVSDELGWTAQGIETISIDEERGEYGLKRLREIIDEYEVDTIVVGFPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM-INMGLSKSARQT 179
+ +G+ P++ + A L +E V L DE R S A +RM I +S+ R+
Sbjct: 64 NMNGTVGPRAEASQRFAKLL---ESEFSLPVILWDE-RLSTMAAERMLITADVSRKKRKQ 119
Query: 180 KTDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 120 VIDKMAAVVILQSYL 134
>gi|125972677|ref|YP_001036587.1| Holliday junction resolvase-like protein [Clostridium thermocellum
ATCC 27405]
gi|256004836|ref|ZP_05429810.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
2360]
gi|281416864|ref|ZP_06247884.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20]
gi|385779407|ref|YP_005688572.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
1313]
gi|419722571|ref|ZP_14249711.1| Holliday junction resolvase [Clostridium thermocellum AD2]
gi|419725549|ref|ZP_14252590.1| Holliday junction resolvase [Clostridium thermocellum YS]
gi|167012716|sp|A3DBR5.1|RUVX_CLOTH RecName: Full=Putative Holliday junction resolvase
gi|125712902|gb|ABN51394.1| Holliday junction resolvase YqgF [Clostridium thermocellum ATCC
27405]
gi|255991146|gb|EEU01254.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
2360]
gi|281408266|gb|EFB38524.1| Holliday junction resolvase YqgF [Clostridium thermocellum JW20]
gi|316941087|gb|ADU75121.1| Holliday junction resolvase YqgF [Clostridium thermocellum DSM
1313]
gi|380771119|gb|EIC04998.1| Holliday junction resolvase [Clostridium thermocellum YS]
gi|380781338|gb|EIC10996.1| Holliday junction resolvase [Clostridium thermocellum AD2]
Length = 141
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 65/139 (46%), Gaps = 8/139 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREE---TDEFIIGLPK 120
LG+D G SR G+A+S G+ + L + R + +E+ L I++ E I+G PK
Sbjct: 4 LGIDYGDSRIGIAISDPLGWTAQALETITWRSD-VEVPLKRISELVEEYGVKTVIVGFPK 62
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+ + K L R + V DE T+ A M MG+ KS ++
Sbjct: 63 NMDGTVGARGEKTIEFIDLLQQRIKDI--EVIKWDERLTTVAANRTMYEMGIKKSKKKLV 120
Query: 181 TDAYAAVILLERYFSMSGQ 199
D AAV +L+ Y G+
Sbjct: 121 VDQIAAVYILQGYLDSKGK 139
>gi|359792099|ref|ZP_09294922.1| Holliday junction resolvase YqgF [Mesorhizobium alhagi CCNWXJ12-2]
gi|359251783|gb|EHK55109.1| Holliday junction resolvase YqgF [Mesorhizobium alhagi CCNWXJ12-2]
Length = 161
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 74/135 (54%), Gaps = 9/135 (6%)
Query: 62 GGFSL-GVDLGLSRTGLALS-KGFCV---RPLTVLKLRGEKLELQLLEIAQREETDEFII 116
GG +L G+DLG G+A+S +G RP+ V K + LL++ +RE T +I
Sbjct: 15 GGKTLAGLDLGDKTIGVAVSDRGLSFAHPRPVIVRK-KFSADAAALLDLLRRENTGAVVI 73
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP + DGSE P++ R+ +A R + + + DE ++ A +I M +S++
Sbjct: 74 GLPVNMDGSEGPRAQASRAFVRNIA-RMTDLPFAFW--DERLSTVAAERTLIEMDMSRAK 130
Query: 177 RQTKTDAYAAVILLE 191
R+TK D+ AA +L+
Sbjct: 131 RKTKIDSAAAAFILQ 145
>gi|419970709|ref|ZP_14486192.1| RNAse H domain protein, YqgF family [Porphyromonas gingivalis W50]
gi|392610203|gb|EIW92986.1| RNAse H domain protein, YqgF family [Porphyromonas gingivalis W50]
Length = 212
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 4/134 (2%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +D G RTGLA++ + P + + L L + RE + F++GLP+
Sbjct: 76 GRILAIDYGRKRTGLAVTDPLKIIPGGLTTVPTHTLLDFLRDYVSREPVERFVLGLPRRM 135
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
+ E+ +R A +LA A + +DE TS A ++ G+ K R+ K
Sbjct: 136 NYEESESMTYIRPFAVKLA--QAFPSIPITYVDERFTSRMAQRTILEAGIGKMKRRDKAL 193
Query: 181 TDAYAAVILLERYF 194
D +AVI+L+ Y
Sbjct: 194 VDEVSAVIILQSYL 207
>gi|365960279|ref|YP_004941846.1| Holliday junction resolvase-like protein [Flavobacterium columnare
ATCC 49512]
gi|365736960|gb|AEW86053.1| Holliday junction resolvase-like protein [Flavobacterium columnare
ATCC 49512]
Length = 138
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D GL RTG+A++ F + + + ++ L +RE+ + +IG PK +G
Sbjct: 5 LAIDYGLKRTGIAVTDDFQIIASGLTTVASTEVLDFLKTYFEREKVVKVLIGDPKQMNGQ 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT--DA 183
+ + V + + + + E ++ +DE TS A MI+ GL K RQ K D
Sbjct: 65 PSESAPLVEAFVQKFSDQFPE--VKIVRVDERFTSKMAFQTMIDSGLKKKQRQNKALIDE 122
Query: 184 YAAVILLERYFS 195
+A I+L+ Y +
Sbjct: 123 ISATIMLKDYLT 134
>gi|126662043|ref|ZP_01733042.1| Holliday junction resolvase-like protein [Flavobacteria bacterium
BAL38]
gi|126625422|gb|EAZ96111.1| Holliday junction resolvase-like protein [Flavobacteria bacterium
BAL38]
Length = 137
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 62/132 (46%), Gaps = 8/132 (6%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G+ RTG+A++ + + + E L + +E+ + IIG PK +G
Sbjct: 5 LAIDYGIKRTGIAVTDEMQMIAFGLTTIPSETAITFLKDYFSKEKVESVIIGEPKQMNG- 63
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYL--LDEHRTSAEAVDRMINMGLSKSARQTK--T 181
E QS + V+ E + L +DE TS A MI+ GL+K RQ K
Sbjct: 64 EPSQST---DIINAFVVKFQEAFPEMPLNRVDERFTSKMAFQTMIDSGLNKKQRQNKALV 120
Query: 182 DAYAAVILLERY 193
D AA I+L+ Y
Sbjct: 121 DEIAATIILQDY 132
>gi|350273398|ref|YP_004884711.1| Holliday junction resolvase-like protein [Rickettsia japonica YH]
gi|348592611|dbj|BAK96572.1| Holliday junction resolvase-like protein [Rickettsia japonica YH]
Length = 154
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + IIGLP
Sbjct: 20 IAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLLNIIEKYKVCGVIIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A LA +YL DE T+ A + + + G+++ R D
Sbjct: 80 RGAVTEQTNIVMKFAEELA---KSINLPIYLQDERLTTKAANNFLKSFGVNRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|417918129|ref|ZP_12561682.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
SK236]
gi|342829120|gb|EGU63481.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
SK236]
Length = 139
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 72/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++++ +K E +L E+ + + D F++GLPK
Sbjct: 4 MGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P +V + A+ + + G V DE T+ A +RM+ +S+S R+
Sbjct: 64 NMNNTSGP---RVEASQAYGAMISEKFGLPVDYQDERLTTV-AAERMLIEQADISRSKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|255037798|ref|YP_003088419.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053]
gi|254950554|gb|ACT95254.1| Holliday junction resolvase YqgF [Dyadobacter fermentans DSM 18053]
Length = 137
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 65/131 (49%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G R+G+A++ + + + +L L + E+ + F++G+PK D +
Sbjct: 5 LAIDYGAKRSGIAVTDPLKIIATALDTVPTHQLTDFLKKYTLSEQVEAFVVGMPKKLDNT 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
++ N R A +++ A V+L DE TS+ A+ MI G KS R+ K D
Sbjct: 65 DS--ENAARVTAFVKSLQKAFPEISVHLHDERFTSSMALQSMIASGSKKSDRRDKGNIDK 122
Query: 184 YAAVILLERYF 194
+A I+L+ +
Sbjct: 123 VSATIILQSFM 133
>gi|169634567|ref|YP_001708303.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
SDF]
gi|169797422|ref|YP_001715215.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AYE]
gi|184156655|ref|YP_001844994.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ACICU]
gi|213155764|ref|YP_002317809.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AB0057]
gi|215484860|ref|YP_002327099.1| Uncharacterized protein family (UPF0081) family protein
[Acinetobacter baumannii AB307-0294]
gi|260550507|ref|ZP_05824717.1| endonuclease [Acinetobacter sp. RUH2624]
gi|260556314|ref|ZP_05828533.1| endonuclease [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|301345137|ref|ZP_07225878.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AB056]
gi|301510702|ref|ZP_07235939.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AB058]
gi|301594962|ref|ZP_07239970.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AB059]
gi|332854386|ref|ZP_08435338.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013150]
gi|332867601|ref|ZP_08437749.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013113]
gi|332873063|ref|ZP_08441020.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6014059]
gi|384130322|ref|YP_005512934.1| endonuclease [Acinetobacter baumannii 1656-2]
gi|384141609|ref|YP_005524319.1| putative Holliday junction resolvase [Acinetobacter baumannii
MDR-ZJ06]
gi|385235922|ref|YP_005797261.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
TCDC-AB0715]
gi|387125431|ref|YP_006291313.1| RNAse H-fold protein YqgF [Acinetobacter baumannii MDR-TJ]
gi|407931260|ref|YP_006846903.1| holliday junction resolvase-like protein [Acinetobacter baumannii
TYTH-1]
gi|416147205|ref|ZP_11601661.1| endonuclease [Acinetobacter baumannii AB210]
gi|417548295|ref|ZP_12199376.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-18]
gi|417555323|ref|ZP_12206392.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-81]
gi|417563147|ref|ZP_12214026.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC137]
gi|417567099|ref|ZP_12217971.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC143]
gi|417570123|ref|ZP_12220980.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC189]
gi|417576955|ref|ZP_12227800.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-17]
gi|417870969|ref|ZP_12515913.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ABNIH1]
gi|417875627|ref|ZP_12520432.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ABNIH2]
gi|417879879|ref|ZP_12524430.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ABNIH3]
gi|417881964|ref|ZP_12526272.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ABNIH4]
gi|421200959|ref|ZP_15658118.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC109]
gi|421203414|ref|ZP_15660553.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AC12]
gi|421456951|ref|ZP_15906289.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
IS-123]
gi|421534981|ref|ZP_15981248.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AC30]
gi|421620168|ref|ZP_16061106.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC074]
gi|421627303|ref|ZP_16068114.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC098]
gi|421630730|ref|ZP_16071431.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC180]
gi|421633993|ref|ZP_16074614.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-13]
gi|421642621|ref|ZP_16083136.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
IS-235]
gi|421649152|ref|ZP_16089547.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
IS-251]
gi|421659279|ref|ZP_16099500.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-83]
gi|421662265|ref|ZP_16102433.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC110]
gi|421675846|ref|ZP_16115765.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC065]
gi|421688420|ref|ZP_16128120.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
IS-143]
gi|421692464|ref|ZP_16132115.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
IS-116]
gi|421693806|ref|ZP_16133438.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-692]
gi|421697948|ref|ZP_16137492.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii IS-58]
gi|421702058|ref|ZP_16141543.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ZWS1122]
gi|421705797|ref|ZP_16145218.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ZWS1219]
gi|421789972|ref|ZP_16226211.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-82]
gi|421792400|ref|ZP_16228555.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-2]
gi|421797953|ref|ZP_16233987.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-21]
gi|421800903|ref|ZP_16236870.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii Canada
BC1]
gi|421806157|ref|ZP_16242029.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-A-694]
gi|421808141|ref|ZP_16243998.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC035]
gi|424053918|ref|ZP_17791449.1| RNAse H-fold protein YqgF [Acinetobacter baumannii Ab11111]
gi|424057187|ref|ZP_17794704.1| RNAse H-fold protein YqgF [Acinetobacter nosocomialis Ab22222]
gi|424061360|ref|ZP_17798850.1| RNAse H-fold protein YqgF [Acinetobacter baumannii Ab33333]
gi|424064854|ref|ZP_17802338.1| RNAse H-fold protein YqgF [Acinetobacter baumannii Ab44444]
gi|425742086|ref|ZP_18860208.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-487]
gi|425751542|ref|ZP_18869487.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-113]
gi|445407771|ref|ZP_21432364.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-57]
gi|445437599|ref|ZP_21441148.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC021]
gi|445446792|ref|ZP_21443423.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-A-92]
gi|445458212|ref|ZP_21447036.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC047]
gi|445465013|ref|ZP_21449791.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC338]
gi|445481437|ref|ZP_21455881.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-78]
gi|445492957|ref|ZP_21460715.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
AA-014]
gi|169150349|emb|CAM88246.1| putative Holliday junction resolvase [Acinetobacter baumannii AYE]
gi|169153359|emb|CAP02476.1| putative Holliday junction resolvase [Acinetobacter baumannii]
gi|183208249|gb|ACC55647.1| predicted endonuclease [Acinetobacter baumannii ACICU]
gi|193076168|gb|ABO10783.2| hypothetical protein A1S_0319 [Acinetobacter baumannii ATCC 17978]
gi|213054924|gb|ACJ39826.1| conserved hypothetical protein [Acinetobacter baumannii AB0057]
gi|213987005|gb|ACJ57304.1| Uncharacterized protein family (UPF0081) family protein
[Acinetobacter baumannii AB307-0294]
gi|260406422|gb|EEW99904.1| endonuclease [Acinetobacter sp. RUH2624]
gi|260410369|gb|EEX03668.1| endonuclease [Acinetobacter baumannii ATCC 19606 = CIP 70.34]
gi|322506542|gb|ADX01996.1| endonuclease [Acinetobacter baumannii 1656-2]
gi|323516421|gb|ADX90802.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
TCDC-AB0715]
gi|332728062|gb|EGJ59453.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013150]
gi|332733875|gb|EGJ65021.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6013113]
gi|332738575|gb|EGJ69445.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
6014059]
gi|333365776|gb|EGK47790.1| endonuclease [Acinetobacter baumannii AB210]
gi|342224980|gb|EGT89990.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ABNIH2]
gi|342226285|gb|EGT91258.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ABNIH1]
gi|342227213|gb|EGT92152.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ABNIH3]
gi|342238213|gb|EGU02646.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ABNIH4]
gi|347592102|gb|AEP04823.1| putative Holliday junction resolvase [Acinetobacter baumannii
MDR-ZJ06]
gi|385879923|gb|AFI97018.1| RNAse H-fold protein YqgF [Acinetobacter baumannii MDR-TJ]
gi|395525729|gb|EJG13818.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC137]
gi|395550571|gb|EJG16580.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC189]
gi|395552771|gb|EJG18779.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC143]
gi|395562991|gb|EJG24644.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC109]
gi|395570176|gb|EJG30838.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-17]
gi|398327067|gb|EJN43206.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AC12]
gi|400210655|gb|EJO41624.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
IS-123]
gi|400388594|gb|EJP51666.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-18]
gi|400391740|gb|EJP58787.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-81]
gi|404559750|gb|EKA65001.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
IS-116]
gi|404561163|gb|EKA66399.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
IS-143]
gi|404569645|gb|EKA74730.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-692]
gi|404572994|gb|EKA78034.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii IS-58]
gi|404667042|gb|EKB34972.1| RNAse H-fold protein YqgF [Acinetobacter baumannii Ab33333]
gi|404667404|gb|EKB35325.1| RNAse H-fold protein YqgF [Acinetobacter baumannii Ab11111]
gi|404672937|gb|EKB40741.1| RNAse H-fold protein YqgF [Acinetobacter baumannii Ab44444]
gi|407194821|gb|EKE65957.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ZWS1122]
gi|407195210|gb|EKE66344.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ZWS1219]
gi|407440720|gb|EKF47237.1| RNAse H-fold protein YqgF [Acinetobacter nosocomialis Ab22222]
gi|407899841|gb|AFU36672.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
TYTH-1]
gi|408512675|gb|EKK14314.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
IS-235]
gi|408513925|gb|EKK15537.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
IS-251]
gi|408693394|gb|EKL39003.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC098]
gi|408697116|gb|EKL42636.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC180]
gi|408700828|gb|EKL46273.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC074]
gi|408705100|gb|EKL50449.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-13]
gi|408707990|gb|EKL53268.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-83]
gi|408715068|gb|EKL60198.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC110]
gi|409987129|gb|EKO43315.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
AC30]
gi|410381363|gb|EKP33929.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC065]
gi|410395578|gb|EKP47872.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-21]
gi|410396398|gb|EKP48666.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-82]
gi|410400707|gb|EKP52875.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-2]
gi|410406264|gb|EKP58276.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii Canada
BC1]
gi|410407034|gb|EKP59022.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-A-694]
gi|410416320|gb|EKP68095.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC035]
gi|425488987|gb|EKU55310.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-487]
gi|425499989|gb|EKU66017.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-113]
gi|444753635|gb|ELW78274.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC021]
gi|444759734|gb|ELW84196.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-A-92]
gi|444762741|gb|ELW87094.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
AA-014]
gi|444770229|gb|ELW94386.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-78]
gi|444775856|gb|ELW99912.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC047]
gi|444779145|gb|ELX03139.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
OIFC338]
gi|444780920|gb|ELX04845.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
Naval-57]
gi|452955597|gb|EME60994.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
MSP4-16]
Length = 146
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G QLL+I + + D FI+GLP +
Sbjct: 10 MAFDFGTQKMGMAIGQSAIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFIVGLPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + W ++DE T+ EA + + A++ D
Sbjct: 70 DDSESELSTRARKFARRLRHQTNIETW---MVDERLTTREAREELGFYQEQGRAKKLSAD 126
Query: 183 AYAAVILLERYF 194
++AA +L++ ++
Sbjct: 127 SFAAALLIQSWY 138
>gi|220931424|ref|YP_002508332.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
gi|254767518|sp|B8D2B0.1|RUVX_HALOH RecName: Full=Putative Holliday junction resolvase
gi|219992734|gb|ACL69337.1| Holliday junction resolvase YqgF [Halothermothrix orenii H 168]
Length = 140
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 72/133 (54%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
+G+D G R G+A+S G + V+ + + +L++++ + + E +E I+G+PK+
Sbjct: 4 MGLDYGDRRIGVAISDKLGMTAQGQEVIIRKTPEEDLEVIKGLIDKYEVEEIIVGMPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGS P++ K R L ++ + +V+ DE ++ EA +I +S+ R+ D
Sbjct: 64 DGSLGPRAEKTRDFIDFLQ-KSLDTPVKVW--DERLSTVEAERVLIEADVSRKKRKGVID 120
Query: 183 AYAAVILLERYFS 195
AA I+L+ Y +
Sbjct: 121 KVAASIILQGYLN 133
>gi|422880993|ref|ZP_16927449.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK355]
gi|332365435|gb|EGJ43196.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK355]
Length = 139
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + +K E +L E+ + + D+F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEDKGEFGLERLGELVKEYKVDKFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ R+ A G V DE T+ A +RM+ +S+S R+
Sbjct: 64 NMNNTSGPRVEASQAYGQRV---AELFGLPVDYQDERLTTV-AAERMLVEQADISRSKRR 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|289765899|ref|ZP_06525277.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D11]
gi|289717454|gb|EFD81466.1| DNA integration/recombination/inversion protein [Fusobacterium sp.
D11]
Length = 147
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+ +D+G R G+A S G PL + + K ++ EI + +T+ ++G+PKS D
Sbjct: 5 IALDIGDVRIGVAKSDIMGIIASPLETINRKKVKSAKRIAEICKENDTNLIVVGIPKSLD 64
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS--AEAVDRMINMGLSKSARQTKT 181
G E Q+ KVR +L + + +DE ++ A+ + + +N + R+
Sbjct: 65 GEEKRQAEKVREYIKKL--KKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV-V 121
Query: 182 DAYAAVILLERYFSM 196
D AA I+L+ Y M
Sbjct: 122 DKVAASIILQTYLDM 136
>gi|184200991|ref|YP_001855198.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201]
gi|183581221|dbj|BAG29692.1| putative Holliday junction resolvase [Kocuria rhizophila DC2201]
Length = 165
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 8/137 (5%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV-----RPLTVLKLRGEKLELQLL-EIAQREETDEFII 116
G +GVD+G R G+AL+ CV + LT + +++++ ++ ++ + +
Sbjct: 8 GVRMGVDVGTVRVGIALTDPDCVLATPHQTLTRDPNPRKAFDVKIITKLCEQRDVRTVYV 67
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGW--RVYLLDEHRTSAEAVDRMINMGLSK 174
GLP+S +G E + R A L R RG V L+DE ++ A +++ G+S+
Sbjct: 68 GLPRSLNGHENDSTRMARDYAAGLLRRLGSRGCTTEVRLVDERLSTVTAHRSLLDSGVSR 127
Query: 175 SARQTKTDAYAAVILLE 191
+ D AAV L+
Sbjct: 128 REHMDRVDQAAAVTFLQ 144
>gi|119475413|ref|ZP_01615766.1| Holliday junction resolvase-like protein [marine gamma
proteobacterium HTCC2143]
gi|119451616|gb|EAW32849.1| Holliday junction resolvase-like protein [marine gamma
proteobacterium HTCC2143]
Length = 153
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 42/132 (31%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
L D G GLA+ + PLT LK + G Q+ +I + D +IGLP +
Sbjct: 15 LCFDFGTKSIGLAIGQSITNTANPLTELKAKDGVPNWEQIKKIIDEWQPDLLLIGLPLNM 74
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGS + S + + A RL R G V + DE +S EA +I S+ ++ D
Sbjct: 75 DGSFSELSRRAKKFANRLHGRF---GLPVSMADERLSSYEAKGEIIQQTGSRDFKRNNVD 131
Query: 183 AYAAVILLERYF 194
+ AA I+LE +
Sbjct: 132 SLAAKIILESWL 143
>gi|423263138|ref|YP_007013163.1| Holliday junction resolvase [Mycoplasma hyorhinis SK76]
gi|422035675|gb|AFX74517.1| Putative Holliday junction resolvase [Mycoplasma hyorhinis SK76]
Length = 137
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+ +DLG G A+S + +PL + + KLEL +L + ++ E + +IG P
Sbjct: 5 IALDLGSKNCGFAISDALRITSQPLENFQFKEHKLELVIEKLKDYFEKYEIELVLIGYPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
S ++T S +V + L+DE +T+ +A MI GLS+ R+
Sbjct: 65 SMQLNQTKSSKRVDYFVNLFKTHF---DIPIKLVDERQTTKKAHSIMIEQGLSRQKRKKN 121
Query: 181 TDAYAAVILLERYFS 195
D AA ++L+ Y +
Sbjct: 122 KDKLAAQLILDDYLN 136
>gi|386389258|ref|ZP_10074074.1| RNAse H domain protein, YqgF family [Haemophilus
paraphrohaemolyticus HK411]
gi|385695637|gb|EIG26188.1| RNAse H domain protein, YqgF family [Haemophilus
paraphrohaemolyticus HK411]
Length = 137
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPK 120
G +S+G +G S TG A + L K + G + ++ Q + D ++GLP
Sbjct: 11 GTYSIGCAVGQSITGTA-------QGLPSFKAQDGIPNWDMICKVIQEWKPDLLVVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + + A RL R V L DE T+ EA + G K+ ++ K
Sbjct: 64 NMDGTEQPLTQRAKKFANRLNGRF---NLPVELQDERLTTVEAKSEIFARGGYKALKKDK 120
Query: 181 TDAYAAVILLERYF 194
D+ +A ++LE +F
Sbjct: 121 VDSISACLILESWF 134
>gi|37525150|ref|NP_928494.1| Holliday junction resolvase-like protein [Photorhabdus luminescens
subsp. laumondii TTO1]
gi|62901002|sp|Q7N7G7.1|RUVX_PHOLL RecName: Full=Putative Holliday junction resolvase
gi|36784576|emb|CAE13476.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 139
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/131 (33%), Positives = 65/131 (49%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSWD 123
S+G +G TG A R LT K G Q+ ++ + + D I+GLP + D
Sbjct: 15 SIGAAIGQEITGTA-------RALTSFKATDGIPNWGQIEKLLKEWQPDLVIVGLPLNMD 67
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E + + R A RL R G +V L DE T+ EA + + G K+ + K DA
Sbjct: 68 GTEQFVTVQARKFANRLHGRF---GVQVQLQDERLTTVEARAHLFDRGGYKALNKGKVDA 124
Query: 184 YAAVILLERYF 194
+AVI+LE +F
Sbjct: 125 TSAVIILESWF 135
>gi|379019200|ref|YP_005295434.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Hlp#2]
gi|376331780|gb|AFB29014.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Hlp#2]
Length = 154
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + IIGLP
Sbjct: 20 IAIDYGSKKLGIALSNQELSIAMPLNTITEINTKIVITALLNIIEKYKVCGVIIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A LA +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNIVMKFAEELA---KSINLPIYLQDERLTTKAANNLLKSFGVKRKDRNNNDD 136
Query: 183 AYAAVILLERYF 194
A AA ++LE
Sbjct: 137 AVAASMILETVL 148
>gi|425734820|ref|ZP_18853137.1| Holliday junction resolvase-like protein [Brevibacterium casei S18]
gi|425480756|gb|EKU47920.1| Holliday junction resolvase-like protein [Brevibacterium casei S18]
Length = 156
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 45/135 (33%), Positives = 63/135 (46%), Gaps = 8/135 (5%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFII 116
R G LG+D+G R G+A G PL V++ E L QL EI E E ++
Sbjct: 3 LRRGRRLGLDIGSVRIGVAACDPDGILATPLAVIRRADEPAALRQLREIIAEYEPIEILV 62
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
G PKS DGS + A R+ + + L+DE ++ EA + G S
Sbjct: 63 GDPKSLDGSARAAAAAALDFARRI-----DTDVPIRLVDERFSTVEAHSSLAAAGKSSRQ 117
Query: 177 RQTKTDAYAAVILLE 191
R+ DA AAVI+L+
Sbjct: 118 RREIVDAQAAVIILQ 132
>gi|422872481|ref|ZP_16918974.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1087]
gi|328944731|gb|EGG38892.1| crossover junction endodeoxyribonuclease [Streptococcus sanguinis
SK1087]
Length = 139
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 72/137 (52%), Gaps = 13/137 (9%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEK----LELQLLEIAQREETDEFIIGLP 119
+G+D+G G+A+S GF + L ++ + EK LE +L E+ + + D+F+IGLP
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIHEEKGGFGLE-RLGELVKEYKVDKFVIGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSAR 177
K+ + + P+ ++ R+ A G V DE T+ A +RM+ +S+S R
Sbjct: 63 KNMNNTSGPRVEASQAYGQRI---AELFGLPVDYQDERLTTV-AAERMLVEQADISRSKR 118
Query: 178 QTKTDAYAAVILLERYF 194
+ D AA ++L+ Y
Sbjct: 119 KKVIDKLAAQLILQNYL 135
>gi|410584336|ref|ZP_11321439.1| RNAse H-fold protein YqgF [Thermaerobacter subterraneus DSM 13965]
gi|410504271|gb|EKP93782.1| RNAse H-fold protein YqgF [Thermaerobacter subterraneus DSM 13965]
Length = 330
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
LG+DLG G+A+S +G RPL L +G+ ++ +++E+A++ + ++G P+
Sbjct: 4 LGLDLGSRVIGVAISDPEGILARPLASLPRQGDDRDIARVVELARQHGAEGIVVGWPRRL 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG P++ + A L RV L DE ++ +A +I+ LS+ R+ D
Sbjct: 64 DGRRGPEAEAAEAFAAGLQAAGVS---RVTLWDERLSTVQAERVLIDADLSRRRRKAIID 120
Query: 183 AYAAVILLERYF 194
AA ++L+ +
Sbjct: 121 RMAATVILQAFL 132
>gi|377809471|ref|YP_005004692.1| putative Holliday junction resolvase [Pediococcus claussenii ATCC
BAA-344]
gi|361056212|gb|AEV95016.1| putative Holliday junction resolvase [Pediococcus claussenii ATCC
BAA-344]
Length = 146
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/141 (28%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + + ++++ ++ + +L E+ + E F+IGLPK
Sbjct: 4 MGLDVGSRTVGIAVSDQLGWTAQGVEIIRINEDEQKFGIERLKELVNQYEVAGFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + SE P++ R G+L G + DE T+ EA +RM+ S+S R+
Sbjct: 64 NMNNSEGPRAEAARDY-GKLVTDTF--GLPIDFQDERLTTVEA-ERMLVEQADTSRSKRK 119
Query: 179 TKTDAYAAVILLERYFSMSGQ 199
D AA ++LE Y G+
Sbjct: 120 KVIDKLAASLILENYLGRQGK 140
>gi|374319157|ref|YP_005065656.1| Putative endonuclease involved in recombination [Rickettsia slovaca
13-B]
gi|383751104|ref|YP_005426205.1| Holliday junction resolvase-like protein [Rickettsia slovaca str.
D-CWPP]
gi|360041706|gb|AEV92088.1| Putative endonuclease involved in recombination [Rickettsia slovaca
13-B]
gi|379774118|gb|AFD19474.1| Holliday junction resolvase-like protein [Rickettsia slovaca str.
D-CWPP]
Length = 154
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + IIGLP
Sbjct: 20 IAIDYGSKKLGIALSNQERSIAMPLNTIAEINKKIVITSLLNILEKYKVCGVIIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A LA +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNIVMKFAEELA---KSINLPIYLQDERLTTKAANNLLKSFGVKRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|409399716|ref|ZP_11249973.1| Holliday junction resolvase YqgF [Acidocella sp. MX-AZ02]
gi|409131146|gb|EKN00861.1| Holliday junction resolvase YqgF [Acidocella sp. MX-AZ02]
Length = 153
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/134 (35%), Positives = 68/134 (50%), Gaps = 10/134 (7%)
Query: 66 LGVDLGLSRTGLALSK-GF-CVRPLTVLKLRGEKLE-LQLLEIAQREETDEFIIGLPKSW 122
LG+D G R G+ALS G P T L+ K +++ EIA RE IIGLP
Sbjct: 20 LGLDPGSKRIGVALSDVGLRIASPYTTLQRTKMKFNAVEIGEIAVREGVGGLIIGLP--L 77
Query: 123 DGSET--PQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
DG +T P++ R A L+ G V ++DE ++AE +R+I G+S++ R
Sbjct: 78 DGEQTLGPRAQAARDWAHGLS---DLLGLPVAMVDESYSTAETHERLIEAGVSRARRAEI 134
Query: 181 TDAYAAVILLERYF 194
D AA +L+R
Sbjct: 135 VDKLAAAEILQRAL 148
>gi|335429495|ref|ZP_08556393.1| RNase H-like ribonuclease [Haloplasma contractile SSD-17B]
gi|334889505|gb|EGM27790.1| RNase H-like ribonuclease [Haloplasma contractile SSD-17B]
Length = 138
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLP 119
+LG+DLG G+A+S G+ + L + +++E+ + +IG P
Sbjct: 3 ALGLDLGSKTLGIAMSDALGYTAQGLETFRFNENHYVHAIDRVIELIDEHNVSKIVIGYP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ DGS ++ V +L ++ V L DE T+ EA +I+ LS+ R+
Sbjct: 63 KNMDGSIGERAKIVERFVNKLK---GKKPIDVVLWDERMTTMEAEKILIDADLSRKKRKK 119
Query: 180 KTDAYAAVILLERYF 194
D AA+++L+ Y
Sbjct: 120 VIDKMAAIVILQSYL 134
>gi|304391702|ref|ZP_07373644.1| putative Holliday junction resolvase [Ahrensia sp. R2A130]
gi|303295931|gb|EFL90289.1| putative Holliday junction resolvase [Ahrensia sp. R2A130]
Length = 160
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 73/138 (52%), Gaps = 6/138 (4%)
Query: 57 DSLWRGGFSLGVDLGLSRTGLALS-KGFCVR-PLTVLKLRGEKLELQ-LLEIAQREETDE 113
D+L G LG+DLG GLA+S + + + P+ +K ++Q +LE A E
Sbjct: 14 DALQGSGRLLGIDLGTKTIGLAISDENWAISSPVRTIKRTKFTPDVQAMLEFATAERVSG 73
Query: 114 FIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLS 173
+IGLP + DGSE P++ R+ A L+ R E + L DE +++EA++ + +
Sbjct: 74 IVIGLPLNMDGSEGPRAQSSRAFARNLS-RLTE--LPIQLWDESLSTSEALEGVSAKKAA 130
Query: 174 KSARQTKTDAYAAVILLE 191
+ K DA AA ++L+
Sbjct: 131 QMKADGKLDALAASLILQ 148
>gi|421490151|ref|ZP_15937525.1| RNAse H domain protein, YqgF family [Streptococcus anginosus
SK1138]
gi|400373556|gb|EJP26484.1| RNAse H domain protein, YqgF family [Streptococcus anginosus
SK1138]
Length = 136
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 73/137 (53%), Gaps = 13/137 (9%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + EK E +L E+ + + D+F++GLPK
Sbjct: 1 MGLDVGSKTVGVAVSDPLGFTAQGLEIIPIDEEKGEFGFDRLSELVKEYKVDKFVVGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYL-LDEHRTSAEAVDRMI--NMGLSKSAR 177
+ + + P+ ++ GRL E+ +++ + + R + A +RM+ +S+ R
Sbjct: 61 NMNNTSGPRVEASQAYGGRL-----EQLFQLPVDYQDERLTTVAAERMLIEQADVSRKKR 115
Query: 178 QTKTDAYAAVILLERYF 194
+ D AA ++L+ Y
Sbjct: 116 KKVIDKLAAQLILQNYL 132
>gi|298346852|ref|YP_003719539.1| putative Holliday junction resolvase [Mobiluncus curtisii ATCC
43063]
gi|315656690|ref|ZP_07909577.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
gi|298236913|gb|ADI68045.1| possible Holliday junction resolvase [Mobiluncus curtisii ATCC
43063]
gi|315492645|gb|EFU82249.1| Holliday junction resolvase [Mobiluncus curtisii subsp. holmesii
ATCC 35242]
Length = 152
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 59 LWRGGFSLGVDLGLSRTGLA--LSKGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFI 115
+ G F L +D+G +R G+A +S P+ L+++ + EL +LL I
Sbjct: 1 MVAGNF-LAIDVGKARIGVARSVSGTSLALPVKTLQVQPDGSELDELLAIITDSNPAAVF 59
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
+GLPK G E + RS A RL R E V+L+DE +SA+A ++ G+
Sbjct: 60 VGLPKLMSGKEGEAARMARSYARRLVRRLGE--LPVHLIDERLSSADAHAKLQQAGVCAR 117
Query: 176 ARQTKTDAYAAVILLERYF 194
++ D AAV +L R
Sbjct: 118 RQKEMVDQLAAVTILTRAL 136
>gi|188587786|ref|YP_001920521.1| Holliday junction resolvase-like protein [Clostridium botulinum E3
str. Alaska E43]
gi|251780381|ref|ZP_04823301.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
gi|226725502|sp|B2V3W4.1|RUVX_CLOBA RecName: Full=Putative Holliday junction resolvase
gi|188498067|gb|ACD51203.1| conserved hypothetical protein [Clostridium botulinum E3 str.
Alaska E43]
gi|243084696|gb|EES50586.1| conserved hypothetical protein [Clostridium botulinum E1 str. 'BoNT
E Beluga']
Length = 137
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+DLG G+A+S GF + +T ++ ++ +++ L +I + + +IGLPK+
Sbjct: 4 LGLDLGKKTIGVAISDPLGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P S ++ G+L A +V DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTIGP-SGEIAMEMGKLVEEAL--NIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIVD 120
Query: 183 AYAAVILLERYF 194
A+ +L+ Y
Sbjct: 121 KVASTYILQGYL 132
>gi|452995075|emb|CCQ93310.1| putative Holliday junction resolvase [Clostridium ultunense Esp]
Length = 141
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 34/135 (25%), Positives = 68/135 (50%), Gaps = 5/135 (3%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+G+D+G R G+A+S GF + + V+ +GEK ++ E+A+ + + ++GLPK+ +
Sbjct: 4 MGLDVGEKRIGVAISDELGFTAQGVEVIPNQGEKGFSRIKELAEMYQVERIVVGLPKNMN 63
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+ + + R+ + + DE T+ A +I+ +S+ R+ D
Sbjct: 64 GTIGERGEETLRFGKRIGEFLS---LPILFWDERLTTVAAERALISADVSRKRRKQVVDK 120
Query: 184 YAAVILLERYFSMSG 198
AA ++L+ Y G
Sbjct: 121 LAATLILQNYLDSQG 135
>gi|379712204|ref|YP_005300543.1| Holliday junction resolvase-like protein [Rickettsia philipii str.
364D]
gi|376328849|gb|AFB26086.1| Holliday junction resolvase-like protein [Rickettsia philipii str.
364D]
Length = 154
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + IIGLP
Sbjct: 20 IAIDYGSKKLGIALSNQELSIAMPLNTITEINKKIVITALLNIIEKYKVCGVIIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A LA +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNIVMKFAEELA---KSINLPIYLQDERLTTKAANNLLKSFGVKRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|392394479|ref|YP_006431081.1| RNAse H-fold protein YqgF [Desulfitobacterium dehalogenans ATCC
51507]
gi|390525557|gb|AFM01288.1| RNAse H-fold protein YqgF [Desulfitobacterium dehalogenans ATCC
51507]
Length = 142
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 36/130 (27%), Positives = 63/130 (48%), Gaps = 4/130 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSWDG 124
+G+D G G+A+S + + +R K EL+ L+ I Q E D ++G PK+ +G
Sbjct: 4 MGLDFGERTIGVAVSDAMLLTAQGIKTIRRSKKELEELKTILQDYEVDHIVLGYPKNMNG 63
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
+ P++ A + E G V L DE ++ A ++ +S++ R+ D
Sbjct: 64 TLGPRAQATEEFA---QILKEEFGLPVTLWDERLSTMGAQRSLLEADVSRAKRKQVIDKM 120
Query: 185 AAVILLERYF 194
AAV +L+ Y
Sbjct: 121 AAVFILQGYL 130
>gi|255655297|ref|ZP_05400706.1| putative holliday junction resolvase [Clostridium difficile
QCD-23m63]
gi|296451281|ref|ZP_06893021.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP08]
gi|296880367|ref|ZP_06904330.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP07]
gi|296259887|gb|EFH06742.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP08]
gi|296428608|gb|EFH14492.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Clostridium difficile NAP07]
Length = 141
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLP 119
G +G+D+G G+A+S G + + +K G+K +++ L+ I + ++ ++ + GLP
Sbjct: 4 GRIMGLDVGDKTIGVAVSDLMGLTAQGVKTIKRVGKKKDIEELKAIIKEKQVNKIVSGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ +G+ PQ KV + E G V DE ++ A ++ +S+ R+
Sbjct: 64 KNMNGTLGPQGEKVIKFC---ELVKEETGIDVEFWDERLSTVAAERSLLEADVSRQKRKK 120
Query: 180 KTDAYAAVILLERYF 194
D AAVI+L+ Y
Sbjct: 121 VIDMLAAVIILQGYL 135
>gi|323448090|gb|EGB03993.1| hypothetical protein AURANDRAFT_67554 [Aureococcus anophagefferens]
Length = 548
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/69 (42%), Positives = 41/69 (59%), Gaps = 2/69 (2%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGE--KLELQLLEIAQREETDEFIIGLPKSW 122
+LGVD GL RTG+ + +G+ RPL V++ G ++ +A RE F++GLP
Sbjct: 476 TLGVDFGLRRTGVCVGRGYASRPLEVVENCGNLTAHAAAIVALALREGATAFVVGLPLDR 535
Query: 123 DGSETPQSN 131
DGSET QS
Sbjct: 536 DGSETEQSG 544
>gi|404406073|ref|ZP_10997657.1| Holliday junction resolvase-like protein [Alistipes sp. JC136]
Length = 137
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 62/137 (45%), Gaps = 10/137 (7%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +D G RTG+A+S + + + ++LE L + RE ++G P
Sbjct: 2 GRILAIDYGTKRTGIAVSDPLRLIAGGLETVPTKELETWLAKYFARENVSTIVVGKPSRM 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGW---RVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
DG+ + + +AGRL R W V DE TS A M+ G+ + AR+
Sbjct: 62 DGTPSETWRFIEPLAGRL-----RRAWPDKEVVFHDERFTSVMAHRTMLESGIGRMARRD 116
Query: 180 K--TDAYAAVILLERYF 194
K D +A I+L+ Y
Sbjct: 117 KALVDKISATIILQSYM 133
>gi|163849371|ref|YP_001637415.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl]
gi|222527368|ref|YP_002571839.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl]
gi|189046090|sp|A9WCR4.1|RUVX_CHLAA RecName: Full=Putative Holliday junction resolvase
gi|254767506|sp|B9LH40.1|RUVX_CHLSY RecName: Full=Putative Holliday junction resolvase
gi|163670660|gb|ABY37026.1| Holliday junction resolvase YqgF [Chloroflexus aurantiacus J-10-fl]
gi|222451247|gb|ACM55513.1| Holliday junction resolvase YqgF [Chloroflexus sp. Y-400-fl]
Length = 153
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSW 122
L +D+G R G+A+S PLT + E+ Q++ + Q ++GLP +
Sbjct: 7 LALDVGERRIGVAISDADARIAAPLTTINAHPPERAIAQIVRLVQERGVSRVVVGLPLTM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G PQ+ V+ A L+ + V + DE TS A + N+GL + + + D
Sbjct: 67 RGERGPQAEVVQRFADTLS---SALSCPVEMFDERLTSVAAEQMLRNLGLKPAKIKAQID 123
Query: 183 AYAAVILLERYF 194
AA I+L+ Y
Sbjct: 124 QVAASIILQDYL 135
>gi|341583683|ref|YP_004764174.1| Holliday junction resolvase-like protein [Rickettsia
heilongjiangensis 054]
gi|340807909|gb|AEK74497.1| Holliday junction resolvase-like protein [Rickettsia
heilongjiangensis 054]
Length = 154
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 63/129 (48%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + IIGLP
Sbjct: 20 IAIDYGSKKLGIALSNQERSIAMPLNTITEINKKFVITSLLNIIEKYKVCGVIIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A LA +YL DE T+ A + + + G+++ R D
Sbjct: 80 RGAVTEQTNIVMKFAEELA---KSINLPIYLQDERLTTKAANNFLKSFGVNRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|326403186|ref|YP_004283267.1| putative Holliday junction resolvase [Acidiphilium multivorum
AIU301]
gi|325050047|dbj|BAJ80385.1| putative Holliday junction resolvase [Acidiphilium multivorum
AIU301]
Length = 158
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 47/139 (33%), Positives = 72/139 (51%), Gaps = 10/139 (7%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLE--LQLLEIAQREETDE 113
+L R +G+D G G+ALS P +K RG+ + +L+IA++E
Sbjct: 12 TLPRNARLIGLDPGSKIIGIALSDVGRRLATPYGAMK-RGKLADSAATILDIARKEGAAA 70
Query: 114 FIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGL 172
IIGLP S DGS P + R A + A E G V ++DE R S+ AV+R +I +
Sbjct: 71 LIIGLPLSMDGSIGPAAQAARDWAHAI---ARETGLPVAMMDE-RLSSAAVNRALIEADV 126
Query: 173 SKSARQTKTDAYAAVILLE 191
+++ R + DA AA +L+
Sbjct: 127 TRAKRAGRVDAAAASYMLQ 145
>gi|254360570|ref|ZP_04976719.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
PHL213]
gi|261493723|ref|ZP_05990241.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|261494545|ref|ZP_05991029.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|452743662|ref|ZP_21943526.1| Holliday junction resolvase-like protein [Mannheimia haemolytica
serotype 6 str. H23]
gi|153091110|gb|EDN73115.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
PHL213]
gi|261309794|gb|EEY11013.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. OVINE]
gi|261310613|gb|EEY11798.1| crossover junction endodeoxyribonuclease [Mannheimia haemolytica
serotype A2 str. BOVINE]
gi|452088280|gb|EME04639.1| Holliday junction resolvase-like protein [Mannheimia haemolytica
serotype 6 str. H23]
Length = 141
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPK 120
G S+G +G S TG A + LT K + G ++ ++ Q + D ++GLP
Sbjct: 15 GTNSIGCAVGQSITGTA-------QGLTTFKAQDGIPNWEEIGKLLQDWKPDMLVVGLPL 67
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A RL R V L DE T+ EA + + G K+ ++ K
Sbjct: 68 NMDGTEQPLTQRARKFANRLNGRF---NLPVELQDERLTTVEAKAEIFSRGGYKALKKDK 124
Query: 181 TDAYAAVILLERYF 194
D+ +A ++LE +F
Sbjct: 125 VDSISACLILESWF 138
>gi|408490032|ref|YP_006866401.1| Holliday junction resolvase, putative [Psychroflexus torquis ATCC
700755]
gi|408467307|gb|AFU67651.1| Holliday junction resolvase, putative [Psychroflexus torquis ATCC
700755]
Length = 137
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
+ +D G+ RTG+A+S + + + L +L +I + E D ++G PK DG
Sbjct: 6 IALDFGMKRTGIAISDEMKMIASGLRTVETRNLMQELKKIIEEESVDTLVVGQPKHIDGK 65
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
P + + V+A + +DE TS A MI+ GL K RQ K D
Sbjct: 66 --PMQLEKNILYFIEDVQALFPSLVIKRIDERFTSKMAFQTMIDSGLKKKQRQNKGLVDE 123
Query: 184 YAAVILLERYF 194
+A I+L+ Y
Sbjct: 124 ISATIILQNYL 134
>gi|154508866|ref|ZP_02044508.1| hypothetical protein ACTODO_01377 [Actinomyces odontolyticus ATCC
17982]
gi|153798500|gb|EDN80920.1| RNAse H domain protein, YqgF family [Actinomyces odontolyticus ATCC
17982]
Length = 162
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 46/153 (30%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 61 RGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIG 117
R G +GVD+G R G++ G P+ L + +L +L +I + + E I+G
Sbjct: 4 RRGIRIGVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVG 63
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
LP+ G E + R A RL + RV ++DE TS +A R+ G+ +
Sbjct: 64 LPRHLRGGEGISAKGARKYARRLKKLVPD--VRVAMVDERMTSNQAHARLRASGIPEIEH 121
Query: 178 QTKTDAYAAVILLERYFS---MSGQ--GTEIVL 205
++ D AA I+LE+ M G+ G EI+L
Sbjct: 122 RSVIDQVAAQIILEQALELERMGGRAPGEEIIL 154
>gi|398818110|ref|ZP_10576709.1| RNAse H-fold protein YqgF [Brevibacillus sp. BC25]
gi|398028908|gb|EJL22411.1| RNAse H-fold protein YqgF [Brevibacillus sp. BC25]
Length = 138
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 73/132 (55%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+D+G G+A+S G+ + + +K + ++ +L +L E+ + + F++GLPK+
Sbjct: 5 MGLDVGDKTIGVAVSDELGWTAQGVETIKRQSKEKDLARLSELVSQYQIGAFVVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P++ ++ L R + V++ DE T+ A +I+ +S+ R+T D
Sbjct: 65 NGTIGPRAEMCQAFGKLLEERTS---LPVHMWDERLTTMAAERMLISADVSRQKRKTVID 121
Query: 183 AYAAVILLERYF 194
AA+++L+ Y
Sbjct: 122 KMAAILILQGYL 133
>gi|317493541|ref|ZP_07951962.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium
9_2_54FAA]
gi|316918484|gb|EFV39822.1| hypothetical protein HMPREF0864_02727 [Enterobacteriaceae bacterium
9_2_54FAA]
Length = 140
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+G +G TG A RPL K + +E +E + D ++GLP + D
Sbjct: 15 SIGAAIGQEVTGTA-------RPLASFKANEGSPDWSKIEKMLKEWQPDLVVVGLPLNMD 67
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E P + + R A R+ R G +V L DE ++ EA + G ++ + DA
Sbjct: 68 GTEQPVTAQARKFANRIHGR---FGVQVALHDERLSTVEARAHLFAGGGYRALDKGSVDA 124
Query: 184 YAAVILLERYF 194
+AVI+LE +F
Sbjct: 125 ASAVIILESWF 135
>gi|422340359|ref|ZP_16421310.1| DNA integration/recombination/inversion protein [Fusobacterium
nucleatum subsp. polymorphum F0401]
gi|355369352|gb|EHG16748.1| DNA integration/recombination/inversion protein [Fusobacterium
nucleatum subsp. polymorphum F0401]
Length = 138
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+ +D+G R G+A S G PL + + K ++ EI + +T+ ++G+PKS D
Sbjct: 5 IALDIGDVRIGVARSDIMGIIASPLETINRKKIKSVKRIAEICKENDTNLIVVGIPKSLD 64
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS--AEAVDRMINMGLSKSARQTKT 181
G E Q+ KVR +L + + + +DE ++ A+ + + +N + R+
Sbjct: 65 GEEKRQAEKVREYIEKL--KKEIKNLEIIEVDERFSTVIADNILKELNKNGAIEKRKV-V 121
Query: 182 DAYAAVILLERYFSM 196
D AA I+L+ Y M
Sbjct: 122 DKVAASIILQTYLDM 136
>gi|261346262|ref|ZP_05973906.1| putative Holliday junction resolvase [Providencia rustigianii DSM
4541]
gi|282565570|gb|EFB71105.1| putative Holliday junction resolvase [Providencia rustigianii DSM
4541]
Length = 139
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 69/134 (51%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLPK 120
G S+GV +G TG A R LT LK + + Q +E +E + +I GLP
Sbjct: 12 GTKSIGVAVGQEITGTA-------RALTSLKANDGRPDWQQIEKLLKEWQPQLVIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E +++ R+ A R+ R G +V L DE ++ EA + G ++ + K
Sbjct: 65 NMDGTEQLVTSQARNFANRIHGRF---GVQVKLHDERLSTVEAKAGLFEQGGYRALSKGK 121
Query: 181 TDAYAAVILLERYF 194
D+ +AV++LE +F
Sbjct: 122 VDSASAVVILESWF 135
>gi|87307204|ref|ZP_01089349.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM
3645]
gi|87289944|gb|EAQ81833.1| hypothetical protein DSM3645_16815 [Blastopirellula marina DSM
3645]
Length = 159
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 62/134 (46%), Gaps = 12/134 (8%)
Query: 67 GVDLGLSRTGLALSKG--FCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSWD 123
G+D G R G+A++ P R K++ Q E +A+ E F++GLP
Sbjct: 17 GIDFGTVRIGVAITDPDRILASPFENYTRRSLKIDRQYFEELAKLERIVLFVVGLPVHMS 76
Query: 124 GSETPQSNKVRSVA---GRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
G+E+ +S + R GR+ G + DE T++ A D + +G++K ++
Sbjct: 77 GNESGKSGEARKFGQWLGRIT------GVPIVYYDERFTTSIAKDYLAGLGMTKQKKKAV 130
Query: 181 TDAYAAVILLERYF 194
D AA ILL Y
Sbjct: 131 IDKLAAQILLTAYL 144
>gi|284048258|ref|YP_003398597.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
20731]
gi|283952479|gb|ADB47282.1| Holliday junction resolvase YqgF [Acidaminococcus fermentans DSM
20731]
Length = 139
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 5/132 (3%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKSW 122
+G+DLG G+++S GF R + ++ +G + +L+ L E+ ++EE +F++G PK+
Sbjct: 4 MGLDLGTRTIGVSVSDETGFIARGVETIRRKGLENDLKRLGELVEQEEVGQFVLGYPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+GS ++ L R V L DE ++ A +I L + R+ D
Sbjct: 64 NGSIGDRARASEEFKTILEERFP--SIPVVLWDERLSTVAAEKVLIEADLQRKKRKKIID 121
Query: 183 AYAAVILLERYF 194
AAV++L+ Y
Sbjct: 122 MMAAVVILQNYL 133
>gi|332710808|ref|ZP_08430745.1| conserved hypothetical protein TIGR00250 [Moorea producens 3L]
gi|332350361|gb|EGJ29964.1| conserved hypothetical protein TIGR00250 [Moorea producens 3L]
Length = 151
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKS 121
+LG+DLG R G+A G LT + + ++ QL E+ + E ++GLP S
Sbjct: 6 ALGLDLGSKRIGVAGCDGTGLIATGLTTIDRTSFQRDVDQLRELVETREVQLLVVGLPYS 65
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG+ Q+ KV+ +A RL AA V +DE TS EA R+ S + +
Sbjct: 66 MDGTLGFQARKVQKLATRL---AAALQLPVEYIDERLTSWEAESRLKASKRSLTQNKGLI 122
Query: 182 DAYAAVILLERYF 194
D +AA I+L+++
Sbjct: 123 DRHAAAIILQQWL 135
>gi|296127814|ref|YP_003635066.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563]
gi|296019630|gb|ADG72867.1| Holliday junction resolvase YqgF [Brachyspira murdochii DSM 12563]
Length = 141
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 67/136 (49%), Gaps = 12/136 (8%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKL---RGEKLELQLLEIAQREETDEFIIGLPKSW 122
LGVD G +TG A P +L + +K++ L++I + + D + GLP S
Sbjct: 3 LGVDFGRKKTGTAFMDMNIKIPFPLLLIEESNAKKVKRALMDIIEEKNIDTVVFGLPLSD 62
Query: 123 DGSETPQSNKVRSVAGRL--AVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+G E+ +++R + L +V+ V +DE+ TS EA I G K+ ++
Sbjct: 63 EGKESEWCSEIRRFSDFLLKSVKV-----NVVFVDEYGTSKEA--DYILRGRKKNVKKKA 115
Query: 181 TDAYAAVILLERYFSM 196
D AA ++LE Y ++
Sbjct: 116 NDLIAAALILENYLNV 131
>gi|303246564|ref|ZP_07332842.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ]
gi|302491904|gb|EFL51782.1| Holliday junction resolvase YqgF [Desulfovibrio fructosovorans JJ]
Length = 147
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSW 122
L +D G +R GLA++ + V PL L + L +LL + + ++G P
Sbjct: 5 LAIDYGQARVGLAVTDPEARVVFPLRTLAWETRDALFHELLAVISDQAVTRIVVGYPMRA 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G E +VR+ RL R V L+DE ++ EA +R+ G + + D
Sbjct: 65 GGDEGLTGRQVRNFVSRLTRRTT---VPVELVDEAHSTEEAAERLREAGYAGKELLARVD 121
Query: 183 AYAAVILLERYF 194
A AA ++LERY
Sbjct: 122 AQAAAVILERYL 133
>gi|440226288|ref|YP_007333379.1| putative Holliday junction resolvase [Rhizobium tropici CIAT 899]
gi|440037799|gb|AGB70833.1| putative Holliday junction resolvase [Rhizobium tropici CIAT 899]
Length = 223
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 68/130 (52%), Gaps = 10/130 (7%)
Query: 67 GVDLGLSRTGLALS---KGFCVRPLTVLK-LRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G+DLG GLA+S + F P VLK ++ + LL A++E+ F+IGLP +
Sbjct: 80 GLDLGTKTIGLAMSDLGRRFAT-PRPVLKRVKFTQDAQTLLAFAEKEKVAAFVIGLPMNM 138
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKT 181
DGS P+ R+ +A + A ++ + R S A +R ++ M +S++ R +
Sbjct: 139 DGSAGPRVQATRAFVRSMAEKTA----LPFVFWDERLSTVAAERALLEMDVSRAKRAERI 194
Query: 182 DAYAAVILLE 191
D+ AA +L+
Sbjct: 195 DSAAASFILQ 204
>gi|438118983|ref|ZP_20871515.1| Holliday junction resolvase-like protein [Spiroplasma melliferum
IPMB4A]
gi|434155685|gb|ELL44618.1| Holliday junction resolvase-like protein [Spiroplasma melliferum
IPMB4A]
Length = 139
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/138 (28%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Query: 64 FSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQ-------REETDEFII 116
+ LGVD+G GLA S+G V + E L+ AQ E+ + I+
Sbjct: 4 YYLGVDVGSKTLGLATSRGLIATGYGVYRFP----ENDFLQAAQYLAGLIRTEQFSDIIV 59
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
G PK+ + + P++ V L + ++L+DE T+ +A M+ LS+
Sbjct: 60 GYPKNMNNTIGPRALMVSDFVNLLK-PLLDATITIHLVDERLTTHQAHQIMLEANLSRQK 118
Query: 177 RQTKTDAYAAVILLERYF 194
R+ K D+ AA ++LE Y
Sbjct: 119 RKQKKDSLAAQLILETYL 136
>gi|307243223|ref|ZP_07525394.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis
DSM 17678]
gi|306493351|gb|EFM65333.1| RNAse H domain protein, YqgF family [Peptostreptococcus stomatis
DSM 17678]
Length = 138
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLP 119
G +G+D+G + G+A+S G + +T +K +K +++ L+ I + + + + GLP
Sbjct: 4 GRIMGLDIGDNTIGVAVSDLMGMTAQGITTIKRSSKKNDIEALKKIIEERQVNLIVSGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ +G+ PQ+ KV + E G + DE T+ A +I + + R+
Sbjct: 64 KNMNGTIGPQAEKVIKFCDLIK---EELGMEIKFWDERLTTVSAEKMLIEGDVRRKNRKK 120
Query: 180 KTDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 121 VIDKLAAVLILQGYL 135
>gi|337282886|ref|YP_004622357.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 15912]
gi|387880481|ref|YP_006310784.1| Holliday junction resolvase-like protein [Streptococcus
parasanguinis FW213]
gi|419799237|ref|ZP_14324598.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0449]
gi|335370479|gb|AEH56429.1| crossover junction endodeoxyribonuclease [Streptococcus
parasanguinis ATCC 15912]
gi|385698440|gb|EIG28801.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0449]
gi|386793929|gb|AFJ26964.1| Holliday junction resolvase-like protein [Streptococcus
parasanguinis FW213]
Length = 139
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++++ +K E +L E+ + + D F++GLPK
Sbjct: 4 MGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLAELVAQYKVDRFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ +A + G V DE T+ A +RM+ +S+S R+
Sbjct: 64 NMNNTSGPRVEASQAYGTMIAEKF---GLPVDYQDERLTTV-AAERMLIEQADISRSKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|291450310|ref|ZP_06589700.1| conserved hypothetical protein [Streptomyces albus J1074]
gi|291353259|gb|EFE80161.1| conserved hypothetical protein [Streptomyces albus J1074]
Length = 158
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 45/157 (28%), Positives = 69/157 (43%), Gaps = 12/157 (7%)
Query: 59 LWRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFI 115
+ R G L VD+G +R G+A G P+ + R +L + + E E +
Sbjct: 4 VLRRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLAALVEEYEPIEVV 63
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
+GLP+S G E P + KVR A LA A V L+DE ++ A M G+
Sbjct: 64 VGLPRSLKGGEGPAAVKVRGFAQELARTIAP--VPVRLVDERMSTVTAAQGMRASGVRSK 121
Query: 176 ARQTKTDAYAAVILLERYF-------SMSGQGTEIVL 205
+ D AAV++L+ G+G E+V+
Sbjct: 122 KGRAVIDQAAAVVILQSALESERASGDAPGEGVEVVI 158
>gi|359299987|ref|ZP_09185826.1| Holliday junction resolvase-like protein [Haemophilus
[parainfluenzae] CCUG 13788]
gi|402305110|ref|ZP_10824169.1| RNAse H domain protein, YqgF family [Haemophilus sputorum HK 2154]
gi|400376223|gb|EJP29110.1| RNAse H domain protein, YqgF family [Haemophilus sputorum HK 2154]
Length = 141
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 66/140 (47%), Gaps = 11/140 (7%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPK 120
G +S+G +G S TG A + L K + G Q+ ++ + D ++GLP
Sbjct: 11 GTYSIGCAVGQSITGTA-------QGLPAFKAQDGIPNWAQIEKVIAEWQPDLLVVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R RL R V DE T+ EA + + G K+ ++ K
Sbjct: 64 NMDGTEQPLTQRARKFGNRLQGRF---NLPVAFQDERLTTVEARSEIFSRGGYKALKKDK 120
Query: 181 TDAYAAVILLERYFSMSGQG 200
D+ +A ++LE +F + G
Sbjct: 121 VDSISACLILESWFENNESG 140
>gi|302517972|ref|ZP_07270314.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78]
gi|302426867|gb|EFK98682.1| Holliday junction resolvase YqgF [Streptomyces sp. SPB78]
Length = 157
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R ++ + E E ++
Sbjct: 4 MRRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVV 63
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR+ AG LA+ A V L+DE T+ A + G++
Sbjct: 64 GLPRSLRGGEGPAAKKVRAFAGGLALLVAP--VPVRLVDERMTTVTAGQGLRASGVNTKK 121
Query: 177 RQTKTDAYAAVILLE 191
++ D AAVI+L+
Sbjct: 122 GRSVIDQAAAVIILQ 136
>gi|333028350|ref|ZP_08456414.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071]
gi|332748202|gb|EGJ78643.1| putative holliday junction resolvase YqgF [Streptomyces sp. Tu6071]
Length = 154
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R ++ + E E ++
Sbjct: 1 MRRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAARRRIKALVDEYEPIELVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR+ AG LA+ A V L+DE T+ A + G++
Sbjct: 61 GLPRSLRGGEGPAAKKVRAFAGGLALLVAP--VPVRLVDERMTTVTAGQGLRASGVNTKK 118
Query: 177 RQTKTDAYAAVILLE 191
++ D AAVI+L+
Sbjct: 119 GRSVIDQAAAVIILQ 133
>gi|283782872|ref|YP_003373626.1| RNAse YqgF [Gardnerella vaginalis 409-05]
gi|298253345|ref|ZP_06977137.1| endonuclease [Gardnerella vaginalis 5-1]
gi|283441449|gb|ADB13915.1| RNAse YqgF [Gardnerella vaginalis 409-05]
gi|297532740|gb|EFH71626.1| endonuclease [Gardnerella vaginalis 5-1]
Length = 152
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 66 LGVDLGLSRTGLALSK-GFC-VRPLTVLKLRGEKLEL--QLLEIAQREETDEFIIGLPKS 121
LG+DLG +R GLALS G P+ +++ G+ ++LE+ + ++ +IGLP
Sbjct: 4 LGIDLGDARVGLALSDPGLTFAHPIGNVQVFGDSFHAIDEVLEVIEDNNVEKVVIGLPLQ 63
Query: 122 WDGSETPQSNKV----RSVAGRLAVRAAERGW------RVYLLDEHRTSAEAVDRMINMG 171
DG+E + K +++ R+ + E+ W V DE T+ A +++
Sbjct: 64 LDGTEGKSAKKALRWGKNLIKRMQILHDEKDWALDYMPEVVWKDERLTTVSAHRQLLQAD 123
Query: 172 LSKSARQTKTDAYAAVILLE 191
LS + D +AV++L+
Sbjct: 124 LSTKKHRPMVDQQSAVLILQ 143
>gi|157828326|ref|YP_001494568.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165933035|ref|YP_001649824.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Iowa]
gi|378721137|ref|YP_005286024.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Colombia]
gi|378722491|ref|YP_005287377.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Arizona]
gi|378723847|ref|YP_005288731.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Hauke]
gi|379016600|ref|YP_005292835.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Brazil]
gi|379017636|ref|YP_005293871.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Hino]
gi|167012757|sp|A8GRN5.1|RUVX_RICRS RecName: Full=Putative Holliday junction resolvase
gi|189046103|sp|B0BX42.1|RUVX_RICRO RecName: Full=Putative Holliday junction resolvase
gi|157800807|gb|ABV76060.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. 'Sheila Smith']
gi|165908122|gb|ABY72418.1| hypothetical cytosolic protein [Rickettsia rickettsii str. Iowa]
gi|376325124|gb|AFB22364.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Brazil]
gi|376326161|gb|AFB23400.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Colombia]
gi|376327515|gb|AFB24753.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Arizona]
gi|376330202|gb|AFB27438.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Hino]
gi|376332862|gb|AFB30095.1| Holliday junction resolvase-like protein [Rickettsia rickettsii
str. Hauke]
Length = 154
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + IIGLP
Sbjct: 20 IAIDYGSKKLGIALSNQELSIAMPLNTITEINTKIVITVLLNIIEKYKVCGVIIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A LA +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNIVMKFAEELA---KSINLPIYLQDERLTTKAANNLLKSFGVKRKDRNNNDD 136
Query: 183 AYAAVILLERYF 194
A AA ++LE
Sbjct: 137 AVAASMILETVL 148
>gi|229495944|ref|ZP_04389668.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
gi|229317036|gb|EEN82945.1| conserved hypothetical protein [Porphyromonas endodontalis ATCC
35406]
Length = 148
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 6/149 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +D G RTGLA++ + P + + +L L E RE D ++G P+
Sbjct: 2 GRILAIDYGKKRTGLAVTDPLRITPGGLATVASSELLQYLSEYIPREGVDLVVVGYPRQM 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
+ E+ + +L R + R+ DE TS A ++ G+ K R+ K
Sbjct: 62 NNEESESMRYIGPFVAKLEKRFPQ--LRIVYYDERFTSCLAQKTILESGIGKQKRRNKAL 119
Query: 181 TDAYAAVILLERYF-SMSGQGTEIVL-PK 207
D +A+I+L+ Y S++ G + L PK
Sbjct: 120 VDEVSAIIILQSYMESLAYSGAPLPLSPK 148
>gi|89890525|ref|ZP_01202035.1| endonuclease involved in recombination repair [Flavobacteria
bacterium BBFL7]
gi|89517440|gb|EAS20097.1| endonuclease involved in recombination repair [Flavobacteria
bacterium BBFL7]
Length = 139
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + + +L + L + E+ + +IG PK D +
Sbjct: 5 LAIDYGKKRTGIAVTDPMQIIASGLTTVATHELSVFLEKYLNTEDVETIVIGEPKQMDYT 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
++ + + A A++ + +DE TS A MI+ GLSKS R+ K D
Sbjct: 65 DSELGGVINAFAK--ALQEKYPAITIERVDERFTSKMAFQTMIDSGLSKSKRRNKALVDE 122
Query: 184 YAAVILLERYF 194
AA I+L+ Y
Sbjct: 123 IAATIILQTYM 133
>gi|294649066|ref|ZP_06726511.1| Holliday junction resolvase-like protein [Acinetobacter
haemolyticus ATCC 19194]
gi|292825051|gb|EFF83809.1| Holliday junction resolvase-like protein [Acinetobacter
haemolyticus ATCC 19194]
Length = 147
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G QLL+I + + + FI+GLP +
Sbjct: 11 MAFDFGTQKMGMAIGQSSIESANPLPLFNMKDGIPDWNQLLKIVKEWQPNLFIVGLPLNM 70
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + W ++DE T+ EA + + A++ D
Sbjct: 71 DDSESELSARARKFARRLRHQTNISTW---MVDERLTTREAREELEFYQSKGQAKRLSAD 127
Query: 183 AYAAVILLERYF 194
++AA +L++ ++
Sbjct: 128 SFAAALLIQSWY 139
>gi|187933084|ref|YP_001885374.1| Holliday junction resolvase-like protein [Clostridium botulinum B
str. Eklund 17B]
gi|226725503|sp|B2THN2.1|RUVX_CLOBB RecName: Full=Putative Holliday junction resolvase
gi|187721237|gb|ACD22458.1| conserved hypothetical protein [Clostridium botulinum B str. Eklund
17B]
Length = 137
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+DLG G+A+S GF + +T ++ ++ +++ L +I + + +IGLPK+
Sbjct: 4 LGLDLGKKTIGVAVSDPLGFTAQGITTIRRANKEKDMEELRKICDEYKVETIVIGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P S ++ G+L A +V DE T+ A M+ LS+S R+ D
Sbjct: 64 NGTIGP-SGEIAMEMGKLVEEAL--NIKVEFWDERLTTVAAHKAMLEADLSRSKRKKIVD 120
Query: 183 AYAAVILLERYF 194
A+ +L+ Y
Sbjct: 121 KVASTYILQGYL 132
>gi|304373321|ref|YP_003856530.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1]
gi|378836005|ref|YP_005205281.1| hypothetical protein MYM_0567 [Mycoplasma hyorhinis GDL-1]
gi|385858713|ref|YP_005905224.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis MCLD]
gi|304309512|gb|ADM21992.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis HUB-1]
gi|330723802|gb|AEC46172.1| Holliday junction resolvase, putative [Mycoplasma hyorhinis MCLD]
gi|367460790|gb|AEX14313.1| hypothetical protein MYM_0567 [Mycoplasma hyorhinis GDL-1]
Length = 137
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 64/135 (47%), Gaps = 8/135 (5%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+ +DLG G A+S + +PL + + KLEL +L + ++ E + +IG P
Sbjct: 5 IALDLGSKSCGFAISDALRITSQPLENFQFKEHKLELVIEKLKDYFEKYEIELVLIGYPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
S ++T S +V + L+DE +T+ +A MI GLS+ R+
Sbjct: 65 SMQLNQTKSSKRVDYFVNLFKTHF---DIPIKLVDERQTTKKAHSIMIEQGLSRQKRKKN 121
Query: 181 TDAYAAVILLERYFS 195
D AA ++L+ Y +
Sbjct: 122 KDKLAAQLILDDYLN 136
>gi|90409104|ref|ZP_01217226.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3]
gi|90309778|gb|EAS37941.1| Holliday junction resolvase-like protein [Psychromonas sp. CNPT3]
Length = 149
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
+G D G G+A + + +PL +K + LE +E + D IIGLP +
Sbjct: 14 MGFDFGSKSIGIATGQMITMTAQPLLAIKAQNGIPNWDNLEQLIKEWQPDMLIIGLPLNM 73
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + + A RL R G ++ L DE T+A A + + +G K+ + K D
Sbjct: 74 DGTEQYITQRAKKFANRLHGRF---GVKIALQDERLTTASAKEFIFELGGYKALDKGKID 130
Query: 183 AYAAVILLERYFS 195
+ +A ++LE + S
Sbjct: 131 SVSAALILESWMS 143
>gi|15604198|ref|NP_220713.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. Madrid E]
gi|383487169|ref|YP_005404849.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. GvV257]
gi|383487746|ref|YP_005405425.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. Chernikova]
gi|383488593|ref|YP_005406271.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. Katsinyian]
gi|383489434|ref|YP_005407111.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. Dachau]
gi|383499571|ref|YP_005412932.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. BuV67-CWPP]
gi|383500408|ref|YP_005413768.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. RpGvF24]
gi|386082172|ref|YP_005998749.1| Putative endonuclease involved in recombination [Rickettsia
prowazekii str. Rp22]
gi|6226362|sp|Q9ZDJ8.1|RUVX_RICPR RecName: Full=Putative Holliday junction resolvase
gi|3860890|emb|CAA14790.1| unknown [Rickettsia prowazekii str. Madrid E]
gi|292571936|gb|ADE29851.1| Putative endonuclease involved in recombination [Rickettsia
prowazekii str. Rp22]
gi|380757534|gb|AFE52771.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. GvV257]
gi|380758105|gb|AFE53341.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. RpGvF24]
gi|380760625|gb|AFE49147.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. Chernikova]
gi|380761472|gb|AFE49993.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. Katsinyian]
gi|380762317|gb|AFE50837.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. BuV67-CWPP]
gi|380763157|gb|AFE51676.1| Holliday junction resolvase-like protein [Rickettsia prowazekii
str. Dachau]
Length = 156
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS P + +K+ + LL I ++ + +IGLP
Sbjct: 20 IAIDYGSKKIGVALSDQELSIAMPFNTITAVNKKVVITSLLNIIKKYKVCGIVIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G T Q+N V A +L G +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGGVTQQTNIVMKFAEKLK---QSLGLPIYLQDERLTTKSANNFLKSFGIKRKDRNHNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|414156440|ref|ZP_11412742.1| RNAse H-fold protein YqgF [Streptococcus sp. F0442]
gi|410870087|gb|EKS18046.1| RNAse H-fold protein YqgF [Streptococcus sp. F0442]
Length = 139
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 73/136 (53%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++++ +K E +L E+ + + D F++GLPK
Sbjct: 4 MGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKKEFGLERLSELVAQYKVDRFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ + V G A+ A + G V DE T+ A +RM+ +S+S R+
Sbjct: 64 NMNNTSGPRV-EASQVYG--AMIAEKFGLPVDYQDERLTTV-AAERMLIEQADVSRSKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|260494134|ref|ZP_05814265.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_33]
gi|336401150|ref|ZP_08581922.1| Holliday junction resolvase [Fusobacterium sp. 21_1A]
gi|423136917|ref|ZP_17124560.1| putative Holliday junction resolvase [Fusobacterium nucleatum
subsp. animalis F0419]
gi|260198280|gb|EEW95796.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
3_1_33]
gi|336161507|gb|EGN64508.1| Holliday junction resolvase [Fusobacterium sp. 21_1A]
gi|371960984|gb|EHO78627.1| putative Holliday junction resolvase [Fusobacterium nucleatum
subsp. animalis F0419]
Length = 147
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+ +D+G R G+A S G PL + + K ++ EI + +T+ ++G+PKS D
Sbjct: 5 IALDIGDVRIGVAKSDIMGIIASPLETINRKKVKSVKRIAEICKENDTNLIVVGIPKSLD 64
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS--AEAVDRMINMGLSKSARQTKT 181
G E Q+ KVR +L + + +DE ++ A+ + + +N + R+
Sbjct: 65 GEEKRQAEKVREYIKKL--KKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV-V 121
Query: 182 DAYAAVILLERYFSM 196
D AA I+L+ Y M
Sbjct: 122 DKVAASIILQTYLDM 136
>gi|284991580|ref|YP_003410134.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
43160]
gi|284064825|gb|ADB75763.1| Holliday junction resolvase YqgF [Geodermatophilus obscurus DSM
43160]
Length = 222
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 5/132 (3%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG+D+G R G+A+S G PL TV + R E ++ + E E I+G P+
Sbjct: 86 LGIDVGTVRVGVAISDPTGTLASPLETVQRARDESDLDRIAALVVEHEVTEVIVGEPRHL 145
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ + + R+ + LA R V+L+DE ++ A + GL ++ D
Sbjct: 146 SGASGASAKEARAYSRALAGRIGS--VPVHLVDERLSTVTAASSLRANGLDSRRQRPVID 203
Query: 183 AYAAVILLERYF 194
AAV++L+ Y
Sbjct: 204 QAAAVVILQAYL 215
>gi|88856252|ref|ZP_01130912.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1]
gi|88814571|gb|EAR24433.1| hypothetical protein A20C1_03111 [marine actinobacterium PHSC20C1]
Length = 153
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/137 (28%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 60 WRGGFSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117
R G LG+D+G R G+A S G P+ ++ ++ ++L +A E E ++G
Sbjct: 1 MRTGTRLGIDVGKVRVGVARSDPHGMIATPVETVQRASSSIK-RILLLAVEFEAVELVVG 59
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
LP + G +TP + R+ A L A V L+DE T+ A + G +
Sbjct: 60 LPIALSGRDTPSTADARAFAQEL---ADGSDITVRLVDERMTTMSAQSALRASGRTTKNS 116
Query: 178 QTKTDAYAAVILLERYF 194
++ D AAVI+L+
Sbjct: 117 RSVVDQVAAVIILQHAL 133
>gi|28493342|ref|NP_787503.1| hypothetical protein TWT375 [Tropheryma whipplei str. Twist]
gi|28572547|ref|NP_789327.1| hypothetical protein TW394 [Tropheryma whipplei TW08/27]
gi|62901025|sp|Q83GD2.1|RUVX_TROWT RecName: Full=Putative Holliday junction resolvase
gi|62901026|sp|Q83HU9.1|RUVX_TROW8 RecName: Full=Putative Holliday junction resolvase
gi|28410679|emb|CAD67065.1| conserved hypothetical protein [Tropheryma whipplei TW08/27]
gi|28476383|gb|AAO44472.1| unknown [Tropheryma whipplei str. Twist]
Length = 145
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 65/135 (48%), Gaps = 11/135 (8%)
Query: 64 FSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
F LG+D G +R G+A + G P+ VL R E +L R DE +IGLP +
Sbjct: 9 FFLGLDFGSTRIGVARNCGSLAVPVGVLP-RASCAE--ILGYISRYSIDEVVIGLPLTLA 65
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--T 181
G E QS ++ R V + G +V DE T+ A + ++G K +Q +
Sbjct: 66 GKEK-QSARLAKEFSRFLVSS---GVQVRFFDERFTTVIATQKFYSLG--KGVKQIRKCV 119
Query: 182 DAYAAVILLERYFSM 196
DA AA ++L+ + M
Sbjct: 120 DAAAATVMLQLFLDM 134
>gi|50122846|ref|YP_052013.1| Holliday junction resolvase-like protein [Pectobacterium
atrosepticum SCRI1043]
gi|62900970|sp|Q6D075.1|RUVX_ERWCT RecName: Full=Putative Holliday junction resolvase
gi|49613372|emb|CAG76823.1| conserved hypothetical protein [Pectobacterium atrosepticum
SCRI1043]
Length = 139
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A R LT K + + Q +E E + D ++GLP
Sbjct: 12 GTKSIGVAIGQEITGTA-------RALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A RL R G + L DE ++ EA + G K+ +
Sbjct: 65 NMDGTEQPLTARARKFANRLHGRF---GVAIELHDERLSTVEARADLFERGGFKALDKGS 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|407009671|gb|EKE24758.1| hypothetical protein ACD_6C00036G0011 [uncultured bacterium]
Length = 147
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+++ + PL + ++ G +LL+I + + + F++GLP +
Sbjct: 11 MAFDFGTQKMGMSVGQSLIASANPLPLFPMKDGIPNWDELLKIVKSHQPNLFLVGLPLNM 70
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + W ++DE T+ EA D + + ++ D
Sbjct: 71 DDSESELSTRARKFARRLRHQTNIETW---MVDERLTTREARDELDHYQAQGRGKKLSAD 127
Query: 183 AYAAVILLERYF 194
+ AA +L+E ++
Sbjct: 128 SIAAALLIESWY 139
>gi|385825404|ref|YP_005861746.1| hypothetical protein [Lactobacillus johnsonii DPC 6026]
gi|417837020|ref|ZP_12483260.1| putative Holliday junction resolvase [Lactobacillus johnsonii pf01]
gi|329666848|gb|AEB92796.1| hypothetical protein LJP_0462 [Lactobacillus johnsonii DPC 6026]
gi|338762699|gb|EGP13966.1| putative Holliday junction resolvase [Lactobacillus johnsonii pf01]
Length = 143
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 70/140 (50%), Gaps = 12/140 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G + L +K+ K Q+ +I ++ + + F++GLPK
Sbjct: 4 LGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGL-SKSAR 177
+ DGS + + RL + VY +DE T+ +A DR++ G+ + R
Sbjct: 64 NMDGSSGHSVERSKQYGERLKEKF---DLPVYYMDERLTTVQA-DRILVEEAGVHDRVER 119
Query: 178 QTKTDAYAAVILLERYFSMS 197
+ D AAV++L+ Y +
Sbjct: 120 KKVIDQMAAVLILQNYLEAT 139
>gi|312866891|ref|ZP_07727104.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0405]
gi|311097674|gb|EFQ55905.1| RNAse H domain protein, YqgF family [Streptococcus parasanguinis
F0405]
Length = 139
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++++ +K E +L E+ + + D F++GLPK
Sbjct: 4 MGLDVGSKTVGVAVSDPLGFTAQGLEIIQIDEDKREFGLERLAELVAQYKVDRFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ +A + G V DE T+ A +RM+ +S+S R+
Sbjct: 64 NMNNTSGPRVEASQAYGTMIAEKF---GLPVDYQDERLTTV-AAERMLIEQADISRSKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|262377004|ref|ZP_06070230.1| endonuclease [Acinetobacter lwoffii SH145]
gi|262308042|gb|EEY89179.1| endonuclease [Acinetobacter lwoffii SH145]
Length = 147
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+++ + PL + ++ G +LL+I + + + F++GLP +
Sbjct: 11 MAFDFGTQKMGMSVGQSLIASANPLPLFPMKDGIPNWDELLKIVKSHQPNLFLVGLPLNM 70
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + W ++DE T+ EA D + + ++ D
Sbjct: 71 DDSESELSTRARKFARRLRHQTNIETW---MVDERLTTREARDELDHYQAQGRGKKLSAD 127
Query: 183 AYAAVILLERYF 194
+ AA +L+E ++
Sbjct: 128 SIAAALLIESWY 139
>gi|163840720|ref|YP_001625125.1| hypothetical protein RSal33209_1978 [Renibacterium salmoninarum
ATCC 33209]
gi|162954196|gb|ABY23711.1| conserved hypothetical protein [Renibacterium salmoninarum ATCC
33209]
Length = 169
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 72/144 (50%), Gaps = 8/144 (5%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKL---RGEKLELQLLEIAQREETDEF 114
R G LGVD+G R G+A+ G PL ++ R L + + E +R+ +
Sbjct: 7 LRRGVRLGVDVGTVRVGVAVCDPDGILATPLRAVQRDAKRNSDLRIIVKEALERDAITIY 66
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLA--VRAAERGWRVYLLDEHRTSAEAVDRMINMGL 172
+ GLP++ G+E+ + R++AG+LA + ++ V L+DE +S A ++ + G+
Sbjct: 67 V-GLPQTLRGTESGSAELARAIAGQLADLLVQSDSAAEVRLIDERLSSVSAHQQLRSAGM 125
Query: 173 SKSARQTKTDAYAAVILLERYFSM 196
+ ++ D AA +L+ M
Sbjct: 126 AGREQRKVIDQVAAAGILQHALEM 149
>gi|89091932|ref|ZP_01164887.1| Holliday junction resolvase-like protein [Neptuniibacter
caesariensis]
gi|89083667|gb|EAR62884.1| Holliday junction resolvase-like protein [Oceanospirillum sp.
MED92]
Length = 158
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Query: 65 SLGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKS 121
+L D G R G+A + PLT L + G ++ ++ + D ++G+P +
Sbjct: 8 ALAFDFGTRRIGVASGQSVTGTASPLTPLIAKDGIPNWDEISKLISEWQPDALVVGIPLN 67
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG+ + +++ R A RL R +L+DE ++AEA + G S + R+
Sbjct: 68 ADGTISDMAHRARKFANRLHERYKTP---CFLMDERLSTAEAKEIHFASGGSDNFREESV 124
Query: 182 DAYAAVILLERYFSMSGQGTEIVLPKRVDLQE 213
D AA ++LE +F+ +I +P L+E
Sbjct: 125 DGIAAQLILESWFN-----CDIRIPSHTRLEE 151
>gi|365836677|ref|ZP_09378065.1| RNAse H domain protein, YqgF family [Hafnia alvei ATCC 51873]
gi|364563575|gb|EHM41379.1| RNAse H domain protein, YqgF family [Hafnia alvei ATCC 51873]
Length = 140
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 63/131 (48%), Gaps = 11/131 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+G +G TG A RPL K + +E +E + D ++GLP + D
Sbjct: 15 SIGAAIGQEVTGTA-------RPLASFKANEGSPDWSKIEKMLKEWQPDLVVVGLPLNMD 67
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E P + + R A R+ R G ++ L DE ++ EA + G ++ + DA
Sbjct: 68 GTEQPVTAQARKFANRIHGR---FGVQIALHDERLSTVEARAHLFAGGGYRALDKGSVDA 124
Query: 184 YAAVILLERYF 194
+AVI+LE +F
Sbjct: 125 ASAVIILESWF 135
>gi|395800694|ref|ZP_10479966.1| Holliday junction resolvase-like protein [Flavobacterium sp. F52]
gi|395437102|gb|EJG03024.1| Holliday junction resolvase-like protein [Flavobacterium sp. F52]
Length = 137
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + + L L + +E+ + +IG PK +G
Sbjct: 5 LSIDYGQKRTGIAVTDEMQIIASGLTTIPTHTLIDFLKDYFAKEKVEAVLIGEPKQMNGQ 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+ ++ + A + + +V +DE TS A MI+ GLSK RQ K D
Sbjct: 65 PSESASVINGFAKHFSNIFPD--MKVIRVDERFTSKMAFQTMIDSGLSKKQRQNKGLIDE 122
Query: 184 YAAVILLERYFS 195
+A ILL+ Y S
Sbjct: 123 ISATILLQDYLS 134
>gi|164688537|ref|ZP_02212565.1| hypothetical protein CLOBAR_02182 [Clostridium bartlettii DSM
16795]
gi|164602950|gb|EDQ96415.1| RNAse H domain protein, YqgF family [Clostridium bartlettii DSM
16795]
Length = 141
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLP 119
G +G+D+G G+A+S G + + ++ +K +++ L+ I + + ++ + GLP
Sbjct: 4 GRIMGLDIGDKTIGVAVSDIMGITAQGVKTIRRESKKKDIEELKNIIKERQVNKIVSGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ +G+ PQ KV + + E G + DE T+ A +I +S+ R+
Sbjct: 64 KNMNGTLGPQGEKVLKLCELIK---EETGLEIDFWDERLTTVAAERSLIEGDVSRKKRKK 120
Query: 180 KTDAYAAVILLERYF 194
D AAVI+L+ Y
Sbjct: 121 VIDMLAAVIILQGYL 135
>gi|421081722|ref|ZP_15542631.1| YqgF [Pectobacterium wasabiae CFBP 3304]
gi|401703535|gb|EJS93749.1| YqgF [Pectobacterium wasabiae CFBP 3304]
Length = 139
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A R LT K + + Q +E E + D ++GLP
Sbjct: 12 GTKSIGVAIGQEITGTA-------RALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A RL R G + L DE ++ EA + G K+ +
Sbjct: 65 NMDGTEQPLTARARKFANRLHGRF---GVAIELHDERLSTVEARADLFERGGFKALDKGS 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|182418929|ref|ZP_02950186.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237669098|ref|ZP_04529082.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
gi|182377212|gb|EDT74780.1| conserved hypothetical protein [Clostridium butyricum 5521]
gi|237657446|gb|EEP55002.1| conserved hypothetical protein [Clostridium butyricum E4 str. BoNT
E BL5262]
Length = 140
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRG--EKLELQLLEIAQREETDEFIIGLPKS 121
LG+DLG G+A+S GF + LT ++ RG EK L +I + + +IGLPK+
Sbjct: 5 LGLDLGQKTIGVAISDPLGFTAQGLTTIR-RGSKEKDIEDLKKICDEYKVETIVIGLPKN 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
+G+ P S ++ G+L E + DE T+ A M+ LS++ R+
Sbjct: 64 MNGTIGP-SGEIAMAFGKLL--EEEFQIEIKFWDERLTTVAAHKAMLEADLSRNKRKKIV 120
Query: 182 DAYAAVILLERYFSM 196
D A+ +L+ Y M
Sbjct: 121 DKVASTYILQGYLDM 135
>gi|345848747|ref|ZP_08801766.1| Holliday junction resolvase-like protein [Streptomyces
zinciresistens K42]
gi|345639832|gb|EGX61320.1| Holliday junction resolvase-like protein [Streptomyces
zinciresistens K42]
Length = 167
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 46/156 (29%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLL-EIAQREETDEFII 116
R G L VD+G +R G+A G P+ + R L+ L ++ + E E ++
Sbjct: 14 MRRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAALRRLGQLVEEYEPIEVVV 73
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR A LA A V L+DE T+ A + G+
Sbjct: 74 GLPRSLKGGEGPAAVKVRGFARELARMIAP--VPVRLVDERMTTVTASQGLRASGVKSRK 131
Query: 177 RQTKTDAYAAVILLERYFS-------MSGQGTEIVL 205
++ D AAVI+L++ G+ E+V+
Sbjct: 132 GRSVIDQAAAVIILQQALESERVSGKAPGESVEVVI 167
>gi|261823143|ref|YP_003261249.1| Holliday junction resolvase-like protein [Pectobacterium wasabiae
WPP163]
gi|261607156|gb|ACX89642.1| Holliday junction resolvase YqgF [Pectobacterium wasabiae WPP163]
gi|385873600|gb|AFI92120.1| Putative Holliday junction resolvase [Pectobacterium sp. SCC3193]
Length = 139
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A R LT K + + Q +E E + D ++GLP
Sbjct: 12 GTKSIGVAIGQEITGTA-------RALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A RL R G + L DE ++ EA + G K+ +
Sbjct: 65 NMDGTEQPLTARARKFANRLHGRF---GVAIELHDERLSTVEARADLFERGGFKALDKGS 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|386774599|ref|ZP_10096977.1| hypothetical protein BparL_12472 [Brachybacterium paraconglomeratum
LC44]
Length = 179
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 42/140 (30%), Positives = 66/140 (47%), Gaps = 10/140 (7%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLK--LRGEKLELQLLEIAQREETDEFIIGL 118
G LGVD+G R GLA S G P+ L+ ++ + LE+ + ++GL
Sbjct: 16 GVRLGVDVGDVRVGLARSDLDGLIATPVETLERDTAARRVVQEALEL----DAHVIMVGL 71
Query: 119 PKSWDGSETPQSNKVRSVAGRLA--VRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
P+S DG+E + K R A L + AA R V L+DE T+ A + + G
Sbjct: 72 PRSLDGTEGAAATKARVFAAELVTLLVAASRQIEVRLIDERLTTVSAHRALHSSGRKGRR 131
Query: 177 RQTKTDAYAAVILLERYFSM 196
+ D AAV++L++ +
Sbjct: 132 HRQVVDQVAAVMILQQALDL 151
>gi|443628975|ref|ZP_21113312.1| putative holliday junction resolvase [Streptomyces
viridochromogenes Tue57]
gi|443337573|gb|ELS51878.1| putative holliday junction resolvase [Streptomyces
viridochromogenes Tue57]
Length = 167
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 43/150 (28%), Positives = 69/150 (46%), Gaps = 12/150 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSW 122
L +D+G +R G+A G P+ + R +L ++ + E E ++GLP+S
Sbjct: 20 LAIDVGDARIGVASCDPDGILATPVETVPGRDIPAAHRRLRQLVEEYEPIEVVVGLPRSL 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G E P + KVR A LA A V L+DE T+ A + G+ ++ D
Sbjct: 80 KGGEGPAAAKVRGFAQELARVIAP--VPVRLVDERMTTVTASQGLRASGVKSKKGRSVID 137
Query: 183 AYAAVILLERYFS-------MSGQGTEIVL 205
AAVI+L++ G+G E+V+
Sbjct: 138 QAAAVIILQQALESERVSGKAPGEGVEVVI 167
>gi|227115172|ref|ZP_03828828.1| Holliday junction resolvase-like protein [Pectobacterium
carotovorum subsp. brasiliensis PBR1692]
Length = 139
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A R LT K + + Q +E E + D ++GLP
Sbjct: 12 GTKSIGVAIGQEITGTA-------RALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A RL R G + L DE ++ EA + G K+ +
Sbjct: 65 NMDGTEQPLTARARKFANRLHGRF---GIAIELHDERLSTVEARADLFERGGFKALDKGS 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|254427533|ref|ZP_05041240.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881]
gi|196193702|gb|EDX88661.1| conserved hypothetical protein TIGR00250 [Alcanivorax sp. DG881]
Length = 133
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L D G + G+A PL L + + + +E E + ++GLP +
Sbjct: 3 LAFDYGTQKIGVASGNMLLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLNM 62
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGS++ + + R A RL R G +V+L+DE ++ EA +R G+ K+ + D
Sbjct: 63 DGSDSESTARARKFANRLHGRF---GKKVWLVDERLSTREARER---TGIQKA--DPRVD 114
Query: 183 AYAAVILLERYFSMSGQ 199
+ AAV++ E YFS + Q
Sbjct: 115 SMAAVVIAEGYFSGNAQ 131
>gi|325292676|ref|YP_004278540.1| Holliday junction resolvase [Agrobacterium sp. H13-3]
gi|418406830|ref|ZP_12980149.1| Holliday junction resolvase-like protein [Agrobacterium tumefaciens
5A]
gi|325060529|gb|ADY64220.1| putative Holliday junction resolvase [Agrobacterium sp. H13-3]
gi|358007323|gb|EHJ99646.1| Holliday junction resolvase-like protein [Agrobacterium tumefaciens
5A]
Length = 159
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 67 GVDLGLSRTGLA---LSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
G+DLG GLA LS+ F + +++ + LL A++E+ FIIGLP + D
Sbjct: 21 GLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTRDAEVLLAFAEKEKVSAFIIGLPINMD 80
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKTD 182
GS P++ R+ + E+ ++ + R S A +R ++ M +S++ R + D
Sbjct: 81 GSAGPRAQATRAFVRTM----GEKTALPFIFWDERLSTVAAERVLLEMDVSRAKRAERID 136
Query: 183 AYAAVILLE 191
+ AA +L+
Sbjct: 137 SAAASFILQ 145
>gi|226951815|ref|ZP_03822279.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244]
gi|226837355|gb|EEH69738.1| Holliday junction resolvase [Acinetobacter sp. ATCC 27244]
Length = 147
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G QLL+I + + + FI+GLP +
Sbjct: 11 MAFDFGTQKMGMAIGQSSIESANPLPLFSMKDGIPDWNQLLKIVKEWQPNLFIVGLPLNM 70
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + W ++DE T+ EA + + A++ D
Sbjct: 71 DDSESELSARARKFARRLRHQTNITTW---MVDERLTTREAREELEFYQSKGQAKRLSAD 127
Query: 183 AYAAVILLERYF 194
++AA +L++ ++
Sbjct: 128 SFAAALLIQSWY 139
>gi|422016568|ref|ZP_16363151.1| Holliday junction resolvase-like protein [Providencia
burhodogranariea DSM 19968]
gi|414092767|gb|EKT54440.1| Holliday junction resolvase-like protein [Providencia
burhodogranariea DSM 19968]
Length = 139
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLPK 120
G S+GV +G TG A R LT LK + + Q +E +E + +I GLP
Sbjct: 12 GTKSIGVAVGQEITGTA-------RSLTSLKAHDGRPDWQQIEKLLKEWQPQLVIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E +++ R+ A R+ R G +V L DE ++ A + G ++ + K
Sbjct: 65 NMDGTEQLVTSQARNFANRIHGRF---GVKVELHDERLSTVAAKSELFERGGYRALSKGK 121
Query: 181 TDAYAAVILLERYF 194
D+ +AVI+LE +F
Sbjct: 122 VDSASAVIILESWF 135
>gi|317057236|ref|YP_004105703.1| Holliday junction resolvase YqgF [Ruminococcus albus 7]
gi|315449505|gb|ADU23069.1| Holliday junction resolvase YqgF [Ruminococcus albus 7]
Length = 140
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 10/135 (7%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
L VD G +RTG+A+S P+ T+ + ++L ++ +IA+ + E I+GLP +
Sbjct: 4 LAVDYGDARTGIAVSDNSEMLASPVCTITEYHADRLAQKIADIAKEQGAGEIIVGLPINM 63
Query: 123 DGSETPQSNKVRSVAG--RLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+G++ ++ K A R V R W DE T+ A + + R+
Sbjct: 64 NGTKGVRAEKCEEFADMLRALVSVEVRMW-----DERSTTVTAHRFLNETNVRGKKRKAV 118
Query: 181 TDAYAAVILLERYFS 195
D AA I+LE Y +
Sbjct: 119 VDTVAATIILESYLA 133
>gi|419706365|ref|ZP_14233889.1| Putative Holliday junction resolvase [Streptococcus salivarius PS4]
gi|383283877|gb|EIC81817.1| Putative Holliday junction resolvase [Streptococcus salivarius PS4]
Length = 139
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 11/137 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + + ++K+ E E +L E+ + + D+F++GLPK
Sbjct: 4 MGLDVGSKTVGIAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVDKFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + +E P+ ++ ++ G V DE T+ +A +RM+ +S+ R+
Sbjct: 64 NMNNTEGPRVEASKAYGNKI---KEIFGIPVDYQDERLTTVQA-ERMLVEQADVSRGKRK 119
Query: 179 TKTDAYAAVILLERYFS 195
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|258647931|ref|ZP_05735400.1| putative Holliday junction resolvase [Prevotella tannerae ATCC
51259]
gi|260851770|gb|EEX71639.1| putative Holliday junction resolvase [Prevotella tannerae ATCC
51259]
Length = 138
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + P + + +L L +E+ + F+IGLP+ +G
Sbjct: 5 LAIDYGKKRTGIAVTDILQIIPNGLTTVATHELLNFLKAYTTKEDVERFVIGLPRQTNGK 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+ +V + A +L Y DE TS A M+ GL K RQ K D
Sbjct: 65 PSENFPRVEAFAKQLEQHFPTIPITFY--DERYTSTLAHQAMLAGGLGKKRRQEKALVDE 122
Query: 184 YAAVILLERYF 194
+A I+L+ Y
Sbjct: 123 ISACIILQSYM 133
>gi|441162946|ref|ZP_20968203.1| Holliday junction resolvase-like protein [Streptomyces rimosus
subsp. rimosus ATCC 10970]
gi|440616471|gb|ELQ79610.1| Holliday junction resolvase-like protein [Streptomyces rimosus
subsp. rimosus ATCC 10970]
Length = 154
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/156 (27%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R +L I + E E ++
Sbjct: 1 MRRGRRLAIDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRLKAIVEEYEPIEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S +G E P + KVR+ A +A A R L+DE T+ A + G+
Sbjct: 61 GLPRSLNGGEGPAAAKVRAFAQEMARGIAPVAVR--LVDERMTTVTATQGLRASGVRSKK 118
Query: 177 RQTKTDAYAAVILLERYFSM-------SGQGTEIVL 205
++ D AAV++L+ G+ E+V+
Sbjct: 119 GRSVVDQAAAVVILQSALETERVSGHPPGESVEVVI 154
>gi|333395599|ref|ZP_08477418.1| Holliday junction resolvase-like protein [Lactobacillus
coryniformis subsp. coryniformis KCTC 3167]
gi|336393183|ref|ZP_08574582.1| Holliday junction resolvase-like protein [Lactobacillus
coryniformis subsp. torquens KCTC 3535]
gi|420145862|ref|ZP_14653311.1| Putative Holliday junction resolvase [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
gi|398402481|gb|EJN55817.1| Putative Holliday junction resolvase [Lactobacillus coryniformis
subsp. coryniformis CECT 5711]
Length = 143
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 72/135 (53%), Gaps = 9/135 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G+ + + ++++ ++ E ++ E+ +F++GLPK
Sbjct: 4 LGLDVGSKTVGIAVSDLLGWTAQGVEIIRINEDEEEFGIDRVKELVTEFSVTDFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQT 179
+ D S P++ ++ GRL A G V+ +DE T+ EA +I+ S+ R+
Sbjct: 64 NMDNSLGPRAEASQAY-GRLL--TATFGLPVHFIDERLTTVEAERMLISQANTSRKKRKK 120
Query: 180 KTDAYAAVILLERYF 194
D AAV++L+ +
Sbjct: 121 VIDKLAAVMILQNFL 135
>gi|169824325|ref|YP_001691936.1| putative endonuclease involved in recombination [Finegoldia magna
ATCC 29328]
gi|297588302|ref|ZP_06946945.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
53516]
gi|167831130|dbj|BAG08046.1| putative endonuclease involved in recombination [Finegoldia magna
ATCC 29328]
gi|297573675|gb|EFH92396.1| crossover junction endodeoxyribonuclease [Finegoldia magna ATCC
53516]
Length = 137
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 68/134 (50%), Gaps = 6/134 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
+G+D+G G+A+S F + + L +K + + +++++ +E E + I+GLPK+
Sbjct: 5 IGLDVGDRTIGVAISDPFLLTAQSLMTIKRKSKIEDIEIINDIIKEKEVSKIIVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+ + PQ+ KV++ L + +DE T+ A +I +S+ R+ D
Sbjct: 65 NNTIGPQAKKVKTFVKEL---RKHTDLDIEYVDERLTTVSATRVLIEQNVSRKKRKDVID 121
Query: 183 AYAAVILLERYFSM 196
+ AA +L+ Y M
Sbjct: 122 SVAATYILQTYLDM 135
>gi|403060139|ref|YP_006648356.1| Holliday junction resolvase-like protein [Pectobacterium
carotovorum subsp. carotovorum PCC21]
gi|402807465|gb|AFR05103.1| Holliday junction resolvase-like protein [Pectobacterium
carotovorum subsp. carotovorum PCC21]
Length = 139
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A R LT K + + Q +E E + D ++GLP
Sbjct: 12 GTKSIGVAIGQEITGTA-------RALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A RL R G + L DE ++ EA + G K+ +
Sbjct: 65 NMDGTEQPLTARARKFANRLHGRF---GIAIELHDERLSTVEARADLFERGGFKALDKGS 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|341615719|ref|ZP_08702588.1| Holliday junction resolvase-like protein [Citromicrobium sp.
JLT1363]
Length = 162
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 62 GGFSLGVDLGLSRTGLALSKG---FCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGL 118
GG +G+DLG G+A+ F T+ + + + ++ ++ ++GL
Sbjct: 21 GGALIGLDLGTKTIGIAVCDAGWRFATALKTLPRGKFGRDRDEMRKLIDGRGVRGIVLGL 80
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P++ DGSE P++ R+ A L A G V L DE ++ A D MI + +S+ R
Sbjct: 81 PRNMDGSEGPRAQASRAYARNL---AEAFGLPVLLWDERWSTKSADDAMIGLDVSRRKRA 137
Query: 179 TKTDAYAAVILLE 191
+ DA AA I+L+
Sbjct: 138 ERIDAEAATIILQ 150
>gi|373859138|ref|ZP_09601870.1| Holliday junction resolvase YqgF [Bacillus sp. 1NLA3E]
gi|372451229|gb|EHP24708.1| Holliday junction resolvase YqgF [Bacillus sp. 1NLA3E]
Length = 138
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 71/136 (52%), Gaps = 12/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + LT LK+ E+ E ++ EI + ++ + ++GLPK
Sbjct: 4 MGLDVGTKTVGVAVSDELGWTAQGLTTLKINEEEKEFGFAEIGEIIKEQQVSKIVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINMGLSKSARQ 178
+ + + P+ ++ AG L E+ + V L DE T+ A ++ +S+ R+
Sbjct: 64 NMNNTIGPRGEACQAYAGEL-----EKLFSLPVVLWDERLTTMAAERVLLEADVSRKKRK 118
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ +
Sbjct: 119 KVIDKMAATLILQGFL 134
>gi|333029958|ref|ZP_08458019.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011]
gi|332740555|gb|EGJ71037.1| Holliday junction resolvase [Bacteroides coprosuis DSM 18011]
Length = 139
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 58/134 (43%), Gaps = 4/134 (2%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +D G RTG+A++ + + +R L L + Q+E ++ IIGLPK
Sbjct: 2 GRILAIDYGRKRTGIAVTDPMQIIANGLTTVRTHDLMDFLTDYTQKESVEKIIIGLPKQM 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
D + + + + + +DE TS A +I GL K RQ K
Sbjct: 62 DNTPSESMKYIEPFVRNFQKKFPDMPLE--YVDERFTSVIAQRTIIEAGLKKKDRQNKAL 119
Query: 181 TDAYAAVILLERYF 194
D +A I+L+ Y
Sbjct: 120 VDEVSATIILQTYL 133
>gi|336325672|ref|YP_004605638.1| putative holliday junction resolvase [Corynebacterium resistens DSM
45100]
gi|336101654|gb|AEI09474.1| putative holliday junction resolvase [Corynebacterium resistens DSM
45100]
Length = 192
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 6/138 (4%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLP 119
G LG+D+G R GLALS G PL + R + ++ Q+ + E IIGLP
Sbjct: 41 GRRLGIDVGTVRIGLALSDPDGILASPLRTVHARDDGGDVRQVACEVEENFVVEVIIGLP 100
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWR---VYLLDEHRTSAEAVDRMINMGLSKSA 176
+ G+ T + K ++ A L A+RG + + ++DE ++ A M G++
Sbjct: 101 VALRGNSTASTEKAKAFASELHDELAQRGHQSIPIRMVDERMSTVAATAAMHASGVNVKK 160
Query: 177 RQTKTDAYAAVILLERYF 194
+ + D AAV +L+ +
Sbjct: 161 GRKRIDQAAAVHILQGWL 178
>gi|269218534|ref|ZP_06162388.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
848 str. F0332]
gi|269211645|gb|EEZ77985.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
848 str. F0332]
Length = 156
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/138 (30%), Positives = 66/138 (47%), Gaps = 5/138 (3%)
Query: 61 RGGFSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGL 118
R G +G D+G R G+A +G P+ L RGE +I + E E I+GL
Sbjct: 2 RRGRRVGFDVGQVRIGVAQCDPEGILATPVETL-WRGESDIDDAAQIVRDCEAMEVIVGL 60
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P + DG+E + R+ A +LA A V L+DE ++ A ++I G + ++
Sbjct: 61 PLNMDGTEGASARDARAWAAKLAESVAPA--PVRLVDERLSTVTAHGQLIAAGRNSRKQR 118
Query: 179 TKTDAYAAVILLERYFSM 196
+ D AAV++L M
Sbjct: 119 SIVDQAAAVVILNTALEM 136
>gi|284007792|emb|CBA73648.1| holliday junction resolvase [Arsenophonus nasoniae]
Length = 74
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 3/72 (4%)
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P SN+ R A RL R G +V L DE T+ EA ++ N G ++ ++K D
Sbjct: 2 DGTEQPISNQARKFANRLHGRF---GIKVTLHDERLTTIEARAQLFNQGGYRALNKSKID 58
Query: 183 AYAAVILLERYF 194
+ +AVI+LE +F
Sbjct: 59 SISAVIILESWF 70
>gi|269925209|ref|YP_003321832.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC
BAA-798]
gi|269788869|gb|ACZ41010.1| Holliday junction resolvase YqgF [Thermobaculum terrenum ATCC
BAA-798]
Length = 149
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 47/165 (28%), Positives = 75/165 (45%), Gaps = 25/165 (15%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+D G R G+ALS G V+ +L ++ IA+ E ++ ++GLP
Sbjct: 4 MGIDPGRKRIGIALSDPTGLLATAYKVIHRTTSDRDLEEIRRIAEHENVEKIVVGLPLHM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINM--GLSKSARQT- 179
G E ++ + R +A ++ G V L+DE TS EA R++ L K R+
Sbjct: 64 SGYEGEEAVRARELAKQIETAT---GLPVELVDERLTSVEAERRLLESRRKLGKLGRKKL 120
Query: 180 KTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQEKLRKGALDNDF 224
DA AA +LL+ Y QE+LR+ A+D+
Sbjct: 121 AIDAEAAAVLLQDYLD----------------QERLRQRAIDSSL 149
>gi|344998518|ref|YP_004801372.1| Holliday junction resolvase YqgF [Streptomyces sp. SirexAA-E]
gi|344314144|gb|AEN08832.1| Holliday junction resolvase YqgF [Streptomyces sp. SirexAA-E]
Length = 154
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 71/155 (45%), Gaps = 12/155 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R +L I + E E ++
Sbjct: 1 MRRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLGRIVEEYEPIEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR+ A LA A V L+DE ++ A + G++
Sbjct: 61 GLPRSLGGGEGPAAVKVRAFAQVLARAIAP--VPVRLVDERMSTVTATQGLRASGVTSKK 118
Query: 177 RQTKTDAYAAVILLERYF-------SMSGQGTEIV 204
++ D AAV++L+ + G+G E+V
Sbjct: 119 GRSVIDQAAAVVILQNALESERASGAAPGEGVEVV 153
>gi|443319268|ref|ZP_21048502.1| RNAse H-fold protein YqgF [Leptolyngbya sp. PCC 6406]
gi|442781095|gb|ELR91201.1| RNAse H-fold protein YqgF [Leptolyngbya sp. PCC 6406]
Length = 156
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 69/133 (51%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVLK-LRGEKLELQLLEIAQREETDEFIIGLPKS 121
+LG+DLG R G+A G LT L+ L +L ++L E+ + E ++G+P +
Sbjct: 7 ALGLDLGRKRIGVAGCDRLGLLATGLTTLEGLAFPELVVKLRELIRDREVQILVVGMPYT 66
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG Q+ KV+S A RL+ RA + V +DE TS A M+ G S + +
Sbjct: 67 LDGQVGNQARKVQSFAQRLS-RALD--LPVEYVDERLTSFHAEQMMVAEGKSPARHKALI 123
Query: 182 DAYAAVILLERYF 194
D AA ++L+++
Sbjct: 124 DRKAAALILQQWL 136
>gi|227326191|ref|ZP_03830215.1| Holliday junction resolvase-like protein [Pectobacterium
carotovorum subsp. carotovorum WPP14]
Length = 139
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/134 (32%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A R LT K + + Q +E E + D ++GLP
Sbjct: 12 GTKSIGVAIGQEITGTA-------RALTSFKAQEGIPDWQKVEKLLSEWQPDLVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A RL R G + L DE ++ EA + G K+ +
Sbjct: 65 NMDGTEQPLTARARKFANRLHGRF---GVAIELHDERLSTVEARADLFERGGFKALDKGS 121
Query: 181 TDAYAAVILLERYF 194
DA +AVI+LE +F
Sbjct: 122 VDAASAVIILESWF 135
>gi|88812469|ref|ZP_01127718.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231]
gi|88790255|gb|EAR21373.1| Holliday junction resolvase YqgF [Nitrococcus mobilis Nb-231]
Length = 143
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 67/135 (49%), Gaps = 8/135 (5%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G R G+A+ + RP+T L+ R G+ LL + + + ++G+P+
Sbjct: 7 LGFDYGWRRLGVAVGQPLTGGARPVTTLRCRQGQPDWAALLHLIEAWQPTALVVGIPRHT 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG--LSKSARQTK 180
DGS + + + + A RL R G V+ +DE +S EA R+ G L + +
Sbjct: 67 DGSASETTLQAVAFAQRLEQRG---GLPVHQVDERLSSHEARARLQATGRRLRGTTGKAL 123
Query: 181 TDAYAAVILLERYFS 195
D +AA I+LE + +
Sbjct: 124 VDQFAAQIILETWLN 138
>gi|309810777|ref|ZP_07704583.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185]
gi|308435257|gb|EFP59083.1| RNAse H domain protein, YqgF family [Dermacoccus sp. Ellin185]
Length = 170
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 67/136 (49%), Gaps = 8/136 (5%)
Query: 61 RGGFSLGVDLGLSRTGLALSK--GFCVRPL-TVLKLRGEKLELQ-LLEIAQREETDEFII 116
R G LGVD+G R G+A+S G P+ T+ + ++Q + E+A E ++
Sbjct: 2 REGIRLGVDVGTVRVGVAVSDPDGIMATPVETLARASASDKDVQRVAELADDARALEVVV 61
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLA-VRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
GLP + G +T + R+ A L +R A RV L+DE TS A + G++
Sbjct: 62 GLPLNMKGEDTASTQAARAWANTLKRLRPA---LRVILVDERLTSVSAHQSLHASGVAGR 118
Query: 176 ARQTKTDAYAAVILLE 191
+ D AAV++L+
Sbjct: 119 EHRQHVDQQAAVLILQ 134
>gi|237744282|ref|ZP_04574763.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
7_1]
gi|422940108|ref|ZP_16967465.1| DNA integration/recombination/inversion protein [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
gi|229431511|gb|EEO41723.1| DNA integration/recombination/invertion protein [Fusobacterium sp.
7_1]
gi|339890262|gb|EGQ79417.1| DNA integration/recombination/inversion protein [Fusobacterium
nucleatum subsp. animalis ATCC 51191]
Length = 147
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+ +D+G R G+A S G PL + + K ++ EI + +T+ ++G+PKS D
Sbjct: 5 IALDIGDVRIGVARSDIMGIIASPLETINRKKVKSVKRIAEICKENDTNLIVVGIPKSLD 64
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS--AEAVDRMINMGLSKSARQTKT 181
G E Q+ KVR +L + + +DE ++ A+ + + +N + R+
Sbjct: 65 GEEKRQAEKVREYIEKL--KKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV-V 121
Query: 182 DAYAAVILLERYFSM 196
D AA I+L+ Y M
Sbjct: 122 DKVAASIILQTYLDM 136
>gi|21220001|ref|NP_625780.1| Holliday junction resolvase-like protein [Streptomyces coelicolor
A3(2)]
gi|32130071|sp|Q9KXQ0.1|RUVX_STRCO RecName: Full=Putative Holliday junction resolvase
gi|8249959|emb|CAB93380.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 167
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/156 (28%), Positives = 69/156 (44%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L VD+G +R G+A G P+ + R +L ++ E E ++
Sbjct: 14 MRRGRRLAVDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVAEYEPIEVVV 73
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR LA A V L+DE T+ A + G+
Sbjct: 74 GLPRSLKGGEGPAAAKVRRFTQELAKGIAP--VPVRLVDERMTTVTASQGLRASGVKSKK 131
Query: 177 RQTKTDAYAAVILLERYFSM-------SGQGTEIVL 205
++ D AAVI+L++ G+G E+V+
Sbjct: 132 GRSVIDQAAAVIILQQALESERVSGRPPGEGVEVVI 167
>gi|304389443|ref|ZP_07371406.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
gi|304327253|gb|EFL94488.1| possible Holliday junction resolvase [Mobiluncus curtisii subsp.
curtisii ATCC 35241]
Length = 152
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 59 LWRGGFSLGVDLGLSRTGLA--LSKGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFI 115
+ G F L +D+G +R G+A +S P+ L+++ + EL +LL I
Sbjct: 1 MVAGNF-LAIDVGKARIGVARSVSGTSLALPVKTLQVQLDGSELDELLAIITDSNPAAVF 59
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
+GLPK G E + RS A RL R E V+L+DE +SA+A ++ G+
Sbjct: 60 VGLPKLMSGKEGEAARMARSYARRLVRRLGE--LPVHLIDERLSSADAHAKLQQAGVCAR 117
Query: 176 ARQTKTDAYAAVILLERYF 194
++ D AAV +L R
Sbjct: 118 RQKEMVDQLAAVTILTRAL 136
>gi|293192680|ref|ZP_06609634.1| putative Holliday junction resolvase [Actinomyces odontolyticus
F0309]
gi|292820187|gb|EFF79184.1| putative Holliday junction resolvase [Actinomyces odontolyticus
F0309]
Length = 162
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 45/153 (29%), Positives = 73/153 (47%), Gaps = 10/153 (6%)
Query: 61 RGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIG 117
R G +GVD+G R G++ G P+ L + +L +L +I + + E I+G
Sbjct: 4 RRGIRIGVDVGTVRVGVSRCDPDGILTMPVETLHRAPDLSDLDRLADIVRSYDAIEVIVG 63
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
LP+ G E + R A R+ + RV ++DE TS +A R+ G+ +
Sbjct: 64 LPRHLRGGEGISAKGARKYARRIKKLVPD--VRVAMVDERMTSNQAHARLRASGIPEIEH 121
Query: 178 QTKTDAYAAVILLERYFS---MSGQ--GTEIVL 205
++ D AA I+LE+ M G+ G EI+L
Sbjct: 122 RSVIDQVAAQIILEQALELERMGGRAPGEEIIL 154
>gi|218961790|ref|YP_001741565.1| putative Holliday junction resolvase [Candidatus Cloacamonas
acidaminovorans]
gi|167730447|emb|CAO81359.1| putative Holliday junction resolvase [Candidatus Cloacamonas
acidaminovorans str. Evry]
Length = 138
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 74/139 (53%), Gaps = 12/139 (8%)
Query: 63 GFSLGVDLGLSRTGLALSKG--FCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLP 119
G L +D G R G+ALS +PL VL +G E+L +L ++ + IIG+P
Sbjct: 5 GRILALDYGEKRIGIALSDPNRIFSKPLCVLSNKGFEQLVEELKKLITLHQVTLLIIGIP 64
Query: 120 KSWDGSETPQSNKVRSVAGRL--AVRAAERGWRVYLLDEHRTSAEAVDRMINMGLS-KSA 176
+ DGS TP++ + + + RL + + G+ DE ++ EA + + MG + + A
Sbjct: 65 YAIDGSITPKTEECQQILNRLKDVLSISVEGF-----DERYSTWEANEELKKMGYNWRQA 119
Query: 177 RQTKTDAYAAVILLERYFS 195
++ K DA +A ++L+ + +
Sbjct: 120 KEIK-DAMSAAMILKEFLN 137
>gi|399924175|ref|ZP_10781533.1| Holliday junction resolvase YqgF [Peptoniphilus rhinitidis 1-13]
Length = 138
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 10/134 (7%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S + +PLT +K K+ ++ +I + ++ ++GLPK+
Sbjct: 5 LGLDVGDVWIGVAISDPLMITAQPLTTIKRESNKIAYDKIHDIIKENNVEKVVVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYL--LDEHRTSAEAVDRMINMGLSKSARQTK 180
+ + PQS KV A +L + ++V + +DE T+ A +I + + R+
Sbjct: 65 NNTIGPQSEKVIKFAEKL-----KNKYKVDIEYVDERMTTLMAEKVLIEGSVRRENRKKY 119
Query: 181 TDAYAAVILLERYF 194
D AA +L+ Y
Sbjct: 120 IDKIAATYILQSYL 133
>gi|415709460|ref|ZP_11463085.1| Putative endonuclease for recombination [Gardnerella vaginalis
6420B]
gi|388056132|gb|EIK79008.1| Putative endonuclease for recombination [Gardnerella vaginalis
6420B]
Length = 154
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 69/140 (49%), Gaps = 14/140 (10%)
Query: 66 LGVDLGLSRTGLALSK-GFC-VRPLTVLKLRGEKLEL--QLLEIAQREETDEFIIGLPKS 121
LG+DLG +R GLALS G P+ +++ G+ ++LE+ + ++ +IGLP
Sbjct: 4 LGIDLGDARVGLALSDPGLTFAHPIGNVQVFGDSFRAIDEVLEVIEDNNVEKVVIGLPLQ 63
Query: 122 WDGSETPQSNKV----RSVAGRLAVRAAERGW------RVYLLDEHRTSAEAVDRMINMG 171
DG+E + K +++ R+ + E+ W V DE T+ A +++
Sbjct: 64 LDGTEGKSAKKALRWGKNLIKRMQILHDEKDWALDYMPEVVWKDERLTTVSAHRQLLQAD 123
Query: 172 LSKSARQTKTDAYAAVILLE 191
LS + D +AV++L+
Sbjct: 124 LSTKKHRPMVDQQSAVLILQ 143
>gi|289578245|ref|YP_003476872.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
gi|289527958|gb|ADD02310.1| Holliday junction resolvase YqgF [Thermoanaerobacter italicus Ab9]
Length = 139
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+G+D+G G+A+S G + LT +K K + + + +I E I+GLPK+
Sbjct: 4 MGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVY-----LLDEHRTSAEAVDRMINMG-LSKSA 176
+G+ PQ KV VR E + + L DE T+ EA +I +S++
Sbjct: 64 NGTLGPQGQKV--------VRFVEHLKKAFSIPIILWDERLTTVEAERVLIEKADISRAK 115
Query: 177 RQTKTDAYAAVILLERYF 194
R+ D AAV++L+ Y
Sbjct: 116 RKEVIDKLAAVLILQNYL 133
>gi|406575409|ref|ZP_11051113.1| Holliday junction resolvase-like protein [Janibacter hoylei PVAS-1]
gi|404555121|gb|EKA60619.1| Holliday junction resolvase-like protein [Janibacter hoylei PVAS-1]
Length = 170
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 72/138 (52%), Gaps = 7/138 (5%)
Query: 61 RGGFSLGVDLGLSRTGLALS--KGFCVRPLTVL--KLRGEKLELQLLEIAQREETDEFII 116
R G +GVD+G +R G+A S +G P+ + L + +++EI E ++
Sbjct: 2 RRGARVGVDVGDARVGVASSDPEGLLATPVETVPRDLEHDADIDRVVEIVTDLAAIEVVV 61
Query: 117 GLPKSWDGSETPQSNKVRSVAGRL--AVRAAE-RGWRVYLLDEHRTSAEAVDRMINMGLS 173
GLP+S DGSE P + K R A RL A++ A V L+DE T+ +A + + G++
Sbjct: 62 GLPRSLDGSEGPAAAKAREWATRLRSALQDAPIDNTPVRLVDERLTTVDAHRGLRDSGVA 121
Query: 174 KSARQTKTDAYAAVILLE 191
+ D AAV++L+
Sbjct: 122 GRRHRGVVDQAAAVLILQ 139
>gi|402815556|ref|ZP_10865148.1| putative holliday junction resolvase [Paenibacillus alvei DSM 29]
gi|402506596|gb|EJW17119.1| putative holliday junction resolvase [Paenibacillus alvei DSM 29]
Length = 138
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKSW 122
LG+D G R G+A+S G+ + L V++ R + +L+ L +I + + ++GLPK+
Sbjct: 4 LGLDYGDRRIGVAISDAFGWTAQGLEVIERRKPEDDLKRLGDIVKEHGVEAIVLGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P+ S A +L G V+L DE ++ A ++ +S+ R+ D
Sbjct: 64 NGTVGPRGELSMSFAEQL---KQSFGLPVHLWDERLSTVSAERTLLEADVSRKKRRQVID 120
Query: 183 AYAAVILLERYF 194
AA I+L+ Y
Sbjct: 121 KMAATIILQTYL 132
>gi|254383593|ref|ZP_04998943.1| conserved hypothetical protein [Streptomyces sp. Mg1]
gi|194342488|gb|EDX23454.1| conserved hypothetical protein [Streptomyces sp. Mg1]
Length = 158
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 60 WRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFII 116
R G L +D+G +R G+A V V + G + +L ++ + E E ++
Sbjct: 5 LRRGRRLAIDVGDARIGVASCDPDGVLATPVETVPGRDVPFAHRRLRQLVEEYEPLEVVV 64
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR+ AG LA + V L+DE T+ A + G +
Sbjct: 65 GLPRSLSGREGPAAVKVRAFAGELA--KGIKPVTVRLVDERMTTVTAAQGLRASGKNAKK 122
Query: 177 RQTKTDAYAAVILLE 191
++ D AAV++L+
Sbjct: 123 GRSVIDQAAAVVILQ 137
>gi|333979434|ref|YP_004517379.1| Holliday junction resolvase [Desulfotomaculum kuznetsovii DSM 6115]
gi|333822915|gb|AEG15578.1| Holliday junction resolvase [Desulfotomaculum kuznetsovii DSM 6115]
Length = 147
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 70/133 (52%), Gaps = 7/133 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLR--GEKLELQLLEIAQREETDEFIIGLPKS 121
LG+D+G G+A+S G+ + + V++ E++ QL ++ Q + + ++GLP++
Sbjct: 6 LGLDVGEKTIGVAVSDPLGWTAQGVGVIRRDRPKEQITGQLKKLIQDYQVERIVVGLPRN 65
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
+G+ Q KV + A +L AE G V DE ++ A ++ +S++ R+
Sbjct: 66 MNGTLGSQGQKVLAFARQL---GAELGLPVETWDERLSTVSAEKVLLAADVSRAKRKKII 122
Query: 182 DAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 123 DKMAAAVILQNYL 135
>gi|217976928|ref|YP_002361075.1| Holliday junction resolvase-like protein [Methylocella silvestris
BL2]
gi|254767519|sp|B8EPC5.1|RUVX_METSB RecName: Full=Putative Holliday junction resolvase
gi|217502304|gb|ACK49713.1| Holliday junction resolvase YqgF [Methylocella silvestris BL2]
Length = 161
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/130 (30%), Positives = 69/130 (53%), Gaps = 8/130 (6%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+G+DLG GLALS + PL T+ +++ K ++L+E+A++ + IIGLP +
Sbjct: 22 IGIDLGTKTIGLALSDVERRIATPLETIQRIKFSKDAVRLIELAEKFDAGALIIGLPLNM 81
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKT 181
DGS+ P+ R+ L+ + + ++ + R S AV R +I+ +S+ R
Sbjct: 82 DGSQGPRVQATRAFVRSLSALVS----KPFVYWDERLSTAAVTRSLIDQDVSRLKRAEVV 137
Query: 182 DAYAAVILLE 191
D AA +L+
Sbjct: 138 DKMAAAYILQ 147
>gi|379735772|ref|YP_005329278.1| Holliday junction resolvase [Blastococcus saxobsidens DD2]
gi|378783579|emb|CCG03247.1| Holliday junction resolvase [Blastococcus saxobsidens DD2]
Length = 224
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 39/144 (27%), Positives = 66/144 (45%), Gaps = 5/144 (3%)
Query: 54 RKKDSLWRGGFSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLEL-QLLEIAQREE 110
R+ + R G LG+D+G R G+ALS PL L+ + +L QL+ + E
Sbjct: 76 RRPGATSRRGRVLGIDVGTVRVGVALSDVTRTLASPLETLRRAKSRTDLDQLVALVAEHE 135
Query: 111 TDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINM 170
E ++G P G+ + A LA R + V L+DE ++ A ++
Sbjct: 136 VTEVVVGEPVHLSGAAGTSAQDAADYAQELADRIPD--VPVNLIDERLSTVTAASQLREG 193
Query: 171 GLSKSARQTKTDAYAAVILLERYF 194
G+ ++ D AAV++L++Y
Sbjct: 194 GIDSRRQRGVIDQAAAVVILQQYL 217
>gi|374339959|ref|YP_005096695.1| RNAse H-fold protein YqgF [Marinitoga piezophila KA3]
gi|372101493|gb|AEX85397.1| RNAse H-fold protein YqgF [Marinitoga piezophila KA3]
Length = 212
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 41/147 (27%), Positives = 72/147 (48%), Gaps = 5/147 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
+ +D GL +TG+A ++ P + +KL L++LE ++ D FI+GLP S G
Sbjct: 4 IALDYGLKKTGIATAEAALKIPTIKNSVGSDKL-LKVLENEIFKDGDIFIVGLPISMSGR 62
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAYA 185
+ Q+ K A +L + VYL+DE T+ + M L+ + K D +
Sbjct: 63 YSTQTFKTIDFAIKLKNKFNS---EVYLVDERLTTQNSY-LMTKDFLNSKKAKKKKDENS 118
Query: 186 AVILLERYFSMSGQGTEIVLPKRVDLQ 212
A+I+L+RY + ++V K ++
Sbjct: 119 ALIILQRYLANPANSIKLVSQKEYKIE 145
>gi|198275232|ref|ZP_03207763.1| hypothetical protein BACPLE_01391 [Bacteroides plebeius DSM 17135]
gi|198271815|gb|EDY96085.1| RNAse H domain protein, YqgF family [Bacteroides plebeius DSM
17135]
Length = 138
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 63/131 (48%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + + +L LL+ +E+ + ++G PK +
Sbjct: 5 LAIDYGRKRTGIAVTDPMQIIANGLTTVPTHELMDFLLKYVAQEKVERIVVGHPKQMNNE 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
++ ++ +L + + V L+DE TS A M++ GL K ARQ K D
Sbjct: 65 DSENMKYIKPFVAQLKKKLPD--MPVELVDERFTSVLAHQAMLDGGLKKKARQDKALVDE 122
Query: 184 YAAVILLERYF 194
+A I+L+ Y
Sbjct: 123 ISATIILQSYL 133
>gi|357237937|ref|ZP_09125276.1| RNAse H domain protein, YqgF family [Streptococcus ictaluri 707-05]
gi|356753441|gb|EHI70556.1| RNAse H domain protein, YqgF family [Streptococcus ictaluri 707-05]
Length = 139
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 71/138 (51%), Gaps = 13/138 (9%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + +K + +L E+ ++ + D+F++GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIITIDEDKKDFGFERLTELVKQYQVDKFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINMG-LSKSAR 177
+ + + P R A + + + ++ VY DE T+ EA +I +S+ R
Sbjct: 64 NMNNTSGP-----RVEASQAYGQKVQELFQLPVYYQDERLTTVEAERMLIEQADVSRGKR 118
Query: 178 QTKTDAYAAVILLERYFS 195
+ D AA ++L+ Y
Sbjct: 119 KKVIDKLAAQLILQNYLD 136
>gi|347528445|ref|YP_004835192.1| putative Holliday junction resolvase [Sphingobium sp. SYK-6]
gi|345137126|dbj|BAK66735.1| putative Holliday junction resolvase [Sphingobium sp. SYK-6]
Length = 158
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 30/90 (33%), Positives = 48/90 (53%), Gaps = 4/90 (4%)
Query: 102 LLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSA 161
L ++ +IGLP + DGSE+P+S R+ A +AV G + L DE ++
Sbjct: 64 LAAFVAQQSVKGLVIGLPLNMDGSESPRSQAARAFARNIAV----LGLPILLWDERWSTV 119
Query: 162 EAVDRMINMGLSKSARQTKTDAYAAVILLE 191
A MI +S++ R K DA+AA ++L+
Sbjct: 120 AAERAMIAQDMSRARRAEKIDAHAAALILQ 149
>gi|322374034|ref|ZP_08048568.1| putative Holliday junction resolvase [Streptococcus sp. C150]
gi|321277000|gb|EFX54071.1| putative Holliday junction resolvase [Streptococcus sp. C150]
Length = 139
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 36/137 (26%), Positives = 71/137 (51%), Gaps = 11/137 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + + ++K+ E E +L E+ + + D+F++GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVDKFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + +E P+ ++ ++ G V DE T+ +A +RM+ +S+ R+
Sbjct: 64 NMNNTEGPRVEASKAYGNKI---KEIFGIPVDYQDERLTTVQA-ERMLVEQADVSRGKRK 119
Query: 179 TKTDAYAAVILLERYFS 195
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|254303693|ref|ZP_04971051.1| possible Holliday junction resolvase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
gi|148323885|gb|EDK89135.1| possible Holliday junction resolvase [Fusobacterium nucleatum
subsp. polymorphum ATCC 10953]
Length = 138
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 67/135 (49%), Gaps = 7/135 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+ +D+G R G+A S G PL + + K ++ EI + +T+ ++G+PKS D
Sbjct: 5 IALDIGDVRIGVARSDIMGIIASPLETINRKKIKSVKRIAEICKENDTNLIVVGIPKSLD 64
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS--AEAVDRMINMGLSKSARQTKT 181
G E Q+ KVR +L R E + +DE ++ A+ + + +N + R+
Sbjct: 65 GEEKRQAEKVREYIEKLK-REIE-NLEIIEVDERFSTVIADNILKELNKNGAIEKRKV-V 121
Query: 182 DAYAAVILLERYFSM 196
D AA I+L+ Y M
Sbjct: 122 DKVAASIILQTYLDM 136
>gi|429197029|ref|ZP_19188951.1| RNAse H domain protein, YqgF family [Streptomyces ipomoeae 91-03]
gi|428667262|gb|EKX66363.1| RNAse H domain protein, YqgF family [Streptomyces ipomoeae 91-03]
Length = 154
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 45/154 (29%), Positives = 70/154 (45%), Gaps = 12/154 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G R G+A G P+ + R + +L ++ + E E ++
Sbjct: 1 MRRGRRLAIDVGDVRIGVASCDPDGILATPVETVPGRDVPAAQRRLRQLVEEYEPIEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR A +LA A V LLDE T+ A + G+
Sbjct: 61 GLPRSLKGGEGPAAVKVRGFAQQLARMIAP--VPVRLLDERMTTVTAGQGLRASGVKSKK 118
Query: 177 RQTKTDAYAAVILLERYFS-------MSGQGTEI 203
++ D AAVI+L++ G+G E+
Sbjct: 119 GRSVIDQAAAVIILQQALESERVSGKAPGEGIEV 152
>gi|42518572|ref|NP_964502.1| Holliday junction resolvase-like protein [Lactobacillus johnsonii
NCC 533]
gi|62900996|sp|Q74KV1.1|RUVX_LACJO RecName: Full=Putative Holliday junction resolvase
gi|41582857|gb|AAS08468.1| hypothetical protein LJ_0476 [Lactobacillus johnsonii NCC 533]
Length = 143
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 69/140 (49%), Gaps = 12/140 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G + L +K+ K Q+ I ++ + + F++GLPK
Sbjct: 4 LGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGLRQIRRIVRKYDVEGFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGL-SKSAR 177
+ DGS + + RL + VY +DE T+ +A DR++ G+ + R
Sbjct: 64 NMDGSSGHSVERSKQYGERLKEKF---DLPVYYMDERLTTVQA-DRILVEEAGVHDRVER 119
Query: 178 QTKTDAYAAVILLERYFSMS 197
+ D AAV++L+ Y +
Sbjct: 120 KKVIDQMAAVLILQNYLEAT 139
>gi|423344489|ref|ZP_17322201.1| RNAse H-fold protein YqgF [Parabacteroides johnsonii CL02T12C29]
gi|409212887|gb|EKN05921.1| RNAse H-fold protein YqgF [Parabacteroides johnsonii CL02T12C29]
Length = 146
Score = 49.7 bits (117), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117
SL G + +D G RTGLA++ + + + +L L + RE + F++G
Sbjct: 3 SLCPMGRIIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTKFLADYVSREPVERFVVG 62
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
LPK + + V + L + Y DE TS A M++ GL K R
Sbjct: 63 LPKQMNNELSENMKYVEAFVTHLKRTIPDIPVEYY--DERFTSVLAHKAMLDGGLKKKKR 120
Query: 178 QTK--TDAYAAVILLERYF 194
Q K D +AVI+L+ Y
Sbjct: 121 QDKGLVDEISAVIILQSYL 139
>gi|126664528|ref|ZP_01735512.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17]
gi|126630854|gb|EBA01468.1| Holliday junction resolvase-like protein [Marinobacter sp. ELB17]
Length = 140
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVR--PLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G R G+A+ + R PLT++ R G QL ++ D ++GLP +
Sbjct: 10 MAFDFGTRRIGVAVGQEMLGRGEPLTMIAARDGTPDWTQLEKLLHEWRPDLVVVGLPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE + R RL R V ++DE TS +A ++ G S++ R+ D
Sbjct: 70 DDSENEMCVRARKFGKRLHGRFHVT---VEMVDERLTSYQAKGEVMAAGGSRNYRRDGID 126
Query: 183 AYAAVILLERYFS 195
AAV++LE +F+
Sbjct: 127 DRAAVLILETWFN 139
>gi|434388360|ref|YP_007098971.1| RNAse H-fold protein YqgF [Chamaesiphon minutus PCC 6605]
gi|428019350|gb|AFY95444.1| RNAse H-fold protein YqgF [Chamaesiphon minutus PCC 6605]
Length = 140
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALSKG---FCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKS 121
+LG+D+G R G+A G T+ + ++ QL +I E + +IGLP +
Sbjct: 5 ALGLDVGNKRIGVAGCDGLGSIATGITTIWRSSFQEDIAQLAQIIAEREVEILVIGLPYT 64
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG Q+ KV+ A R+ AAE + +DE TS A M + +S S +
Sbjct: 65 MDGQIGSQAKKVQKFARRV---AAEIALPIEYVDERLTSYAAEQIMKDANISISRNKATI 121
Query: 182 DAYAAVILLERYF 194
D AA ++L+++
Sbjct: 122 DRIAAAVILQQWL 134
>gi|222148317|ref|YP_002549274.1| Holliday junction resolvase-like protein [Agrobacterium vitis S4]
gi|254767491|sp|B9JVI8.1|RUVX_AGRVS RecName: Full=Putative Holliday junction resolvase
gi|221735305|gb|ACM36268.1| holliday junction resolvase protein [Agrobacterium vitis S4]
Length = 158
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 68/140 (48%), Gaps = 12/140 (8%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALS---KGFCVRPLTVLK-LRGEKLELQLLEIAQREETDE 113
SL G G+DLG GLA+S + F P TV+K + K LL A +E+
Sbjct: 12 SLQPGQAVAGLDLGTKTIGLAMSDLGRRFA-SPRTVIKRTKFTKDAEVLLAFAAKEKVAA 70
Query: 114 FIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL--DEHRTSAEAVDRMINMG 171
F+IGLP + DGS P+ R+ VRA + + DE ++ A ++ M
Sbjct: 71 FVIGLPINMDGSSGPRVQATRAF-----VRAMAEKTDIPFVYWDERLSTVAATRALLEMD 125
Query: 172 LSKSARQTKTDAYAAVILLE 191
+S++ R + D+ AA +L+
Sbjct: 126 VSRAKRAERIDSAAASFILQ 145
>gi|437999574|ref|YP_007183307.1| Holliday junction resolvase-like protein [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
gi|429338808|gb|AFZ83230.1| Holliday junction resolvase-like protein [Candidatus
Kinetoplastibacterium blastocrithidii (ex Strigomonas
culicis)]
Length = 138
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L D G+ + G+AL + RPL +++ + + ++ +E D IIGLP +
Sbjct: 7 LAFDFGIKKIGVALGNTLTLKARPLEIIQSEKNSIRFERIDFLLKEWGVDHVIIGLPLNK 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE + + R A ++ R +V +DE +S EA + S D
Sbjct: 67 DGSEQEMTFRCRRFANQVNGRF---NIKVDFVDERYSSIEAQSLL-------SKNNAIED 116
Query: 183 AYAAVILLERYF 194
A AA ++L+ YF
Sbjct: 117 AVAAAVILQNYF 128
>gi|407801871|ref|ZP_11148714.1| endonuclease, Holliday junction resolvase [Alcanivorax sp. W11-5]
gi|407024188|gb|EKE35932.1| endonuclease, Holliday junction resolvase [Alcanivorax sp. W11-5]
Length = 140
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 65/133 (48%), Gaps = 8/133 (6%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
L D G + GLA + PL L R G Q+ + + D ++GLP +
Sbjct: 6 LAFDFGTRKIGLASGQSLTGTGSPLPALPCREGIPDWEQVRRLLAEWQPDLLLVGLPLNM 65
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+++ S + R AGRL R G V L+DE ++ EA DR+ + + + D
Sbjct: 66 DGTDSDLSQRARRFAGRLKGRF---GKPVQLIDERLSTREARDRLGDH--YRGGSDPRVD 120
Query: 183 AYAAVILLERYFS 195
+ AAV+L+E +F+
Sbjct: 121 SMAAVLLIESFFN 133
>gi|402825461|ref|ZP_10874744.1| hypothetical protein LH128_20685 [Sphingomonas sp. LH128]
gi|402260991|gb|EJU11071.1| hypothetical protein LH128_20685 [Sphingomonas sp. LH128]
Length = 156
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/143 (30%), Positives = 71/143 (49%), Gaps = 15/143 (10%)
Query: 56 KDSLWRGGFSLGVDLGLSRTGLALSKGFC------VRPLTVLKLRGEKLELQLLEIAQRE 109
+++L G LG+DLG G A FC P +K + L+E RE
Sbjct: 11 REALPNKGALLGLDLGTQTIGTA----FCDAGWRIASPGKTIKRGKFGADKALMEDLIRE 66
Query: 110 ETDE-FIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI 168
+ + +IGLP + DGSE P++ R+ A L+V G + L DE +++ A +I
Sbjct: 67 RSVKGIVIGLPLNMDGSEGPRAQSSRAYARNLSV----LGLPILLWDERWSTSSAERGLI 122
Query: 169 NMGLSKSARQTKTDAYAAVILLE 191
+S++ R T+ D+ AA ++L+
Sbjct: 123 EQDMSRAKRATRIDSAAAAVILQ 145
>gi|406670610|ref|ZP_11077855.1| RNAse H-fold protein YqgF [Facklamia hominis CCUG 36813]
gi|405582126|gb|EKB56132.1| RNAse H-fold protein YqgF [Facklamia hominis CCUG 36813]
Length = 144
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 72/136 (52%), Gaps = 8/136 (5%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLP 119
S+G+D+G G+A+S G+ + L +++ EK EL +LLE+ + +IGLP
Sbjct: 7 SMGLDVGSRTVGVAISDPMGWTAQGLETIQIDEEKGELGLDRLLELVDVYQVTTLVIGLP 66
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQ 178
K+ D S ++ S+A AV+ ++ DE T+++A +I G +S+ R+
Sbjct: 67 KNMDNSIGQRAEA--SMAYGEAVKQRLPHCQIIYQDERLTTSQAERMLIEEGNVSRKKRK 124
Query: 179 TKTDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 125 QVIDKLAAVMILQNYL 140
>gi|297198337|ref|ZP_06915734.1| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083]
gi|297147063|gb|EDY58423.2| Holliday junction resolvase YqgF [Streptomyces sviceus ATCC 29083]
Length = 154
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 45/159 (28%), Positives = 71/159 (44%), Gaps = 18/159 (11%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R +L ++ + E E ++
Sbjct: 1 MRRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLKQLVEEYEPIEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWR---VYLLDEHRTSAEAVDRMINMGLS 173
GLP+S G E P + KVR LA RG V L+DE T+ A + G+
Sbjct: 61 GLPRSLKGGEGPAAVKVRGFVQELA-----RGIAPVPVRLVDERMTTVTASQGLRASGVK 115
Query: 174 KSARQTKTDAYAAVILLERYFS-------MSGQGTEIVL 205
++ D AAVI+L++ G+G E+V+
Sbjct: 116 SKKGRSVIDQAAAVIILQQALESERVSGKAPGEGVEVVI 154
>gi|418296123|ref|ZP_12907967.1| Holliday junction resolvase-like protein [Agrobacterium tumefaciens
CCNWGS0286]
gi|355539555|gb|EHH08793.1| Holliday junction resolvase-like protein [Agrobacterium tumefaciens
CCNWGS0286]
Length = 159
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 67 GVDLGLSRTGLA---LSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
G+DLG GLA LS+ F + +++ + LL A++E+ FIIGLP + D
Sbjct: 21 GLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAEVLLAFAEKEKVSAFIIGLPMNMD 80
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKTD 182
GS P+ R+ + E+ ++ + R S A +R ++ M +S++ R + D
Sbjct: 81 GSAGPRVQATRAFVRTM----GEKTALPFIFWDERLSTVAAERALLEMDVSRAKRAERID 136
Query: 183 AYAAVILLE 191
+ AA +L+
Sbjct: 137 SAAASFILQ 145
>gi|237808011|ref|YP_002892451.1| Holliday junction resolvase-like protein [Tolumonas auensis DSM
9187]
gi|237500272|gb|ACQ92865.1| Holliday junction resolvase YqgF [Tolumonas auensis DSM 9187]
Length = 146
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKL-RGEKLELQLLEIAQREETDEFIIGLPKSW 122
+G D G G+A + PLT LK G Q+ ++ + + D I+GLP +
Sbjct: 10 MGFDFGTKSIGIATGQEITGSASPLTSLKANEGIPDWAQIEKLLKEWQPDLLIVGLPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E + + R RL R G++V DE T+ +A R+ G ++ +++ D
Sbjct: 70 DGTEQEMTQRARKFGQRLHGRF---GFQVEFKDERLTTTDAKARLFEHGGYRALGKSRVD 126
Query: 183 AYAAVILLERYF 194
A +A ++LE +
Sbjct: 127 AVSAQLILESWM 138
>gi|94986946|ref|YP_594879.1| endonuclease [Lawsonia intracellularis PHE/MN1-00]
gi|442555775|ref|YP_007365600.1| Holliday junction resolvase YqgF [Lawsonia intracellularis N343]
gi|146325577|sp|Q1MR19.1|RUVX_LAWIP RecName: Full=Putative Holliday junction resolvase
gi|94731195|emb|CAJ54557.1| predicted endonuclease involved in recombination (possible Holliday
junction resolvase in Mycoplasmas and B. subtilis)
[Lawsonia intracellularis PHE/MN1-00]
gi|441493222|gb|AGC49916.1| Holliday junction resolvase YqgF [Lawsonia intracellularis N343]
Length = 142
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 66 LGVDLGLSRTGLALSKG---FCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G TG+A+S F +++ ++ ++L+E+ E D ++GLP +
Sbjct: 4 VAIDYGTKYTGIAVSDSMGVFAFPKQSIIMTTQKEFFIKLVELIYVESPDALVVGLPVLF 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SET + +VR+ RL + V+L+ E +S EA + ++G K+ ++ D
Sbjct: 64 DNSETLITRQVRNFIKRLKHKIM---LPVFLMKEILSSYEAKLDLQSVGYRKNKIKSVLD 120
Query: 183 AYAAVILLERYFSMS 197
AAV +L+ + S
Sbjct: 121 QQAAVRILQSFLDQS 135
>gi|75676194|ref|YP_318615.1| Holliday junction resolvase-like protein [Nitrobacter winogradskyi
Nb-255]
gi|146325584|sp|Q3SR28.1|RUVX_NITWN RecName: Full=Putative Holliday junction resolvase
gi|74421064|gb|ABA05263.1| Holliday junction resolvase YqgF [Nitrobacter winogradskyi Nb-255]
Length = 163
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 63 GFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLP 119
G +G+DLG G+A+S + T+ + +LL IA + FI+GLP
Sbjct: 19 GALVGLDLGTKTIGVAVSDPDRRLATGVETIRRKTFTADAARLLAIAGERRAEGFILGLP 78
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQ 178
+ DGSE P++ R+ A LA R + + + L DE R S AV+R +I + +S++ R
Sbjct: 79 INMDGSEGPRAQSTRAFARNLA-RLTD--FAIGLWDE-RLSTAAVERELIGLDMSRARRA 134
Query: 179 TKTDAYAAVILLE 191
D +AA+ +L+
Sbjct: 135 KVIDEHAAIFILQ 147
>gi|424778273|ref|ZP_18205223.1| Holliday junction resolvase-like protein [Alcaligenes sp. HPC1271]
gi|422886812|gb|EKU29224.1| Holliday junction resolvase-like protein [Alcaligenes sp. HPC1271]
Length = 135
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L D GL + G+AL RP T+L+ + +E +E + D ++GLP +
Sbjct: 9 LAFDYGLKKIGVALGNTLTRQARPYTILRPVTREQRFAAIEALLKEWQPDRVVVGLPLTL 68
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG E S + R A +L R G V L+DE +S EA + + N D
Sbjct: 69 DGGEQYASLRCRRFANQLHGR---YGVAVDLVDERGSSMEAQELLGN--------NDDDD 117
Query: 183 AYAAVILLERYF 194
A AA ++L+RY
Sbjct: 118 AMAACVILQRYL 129
>gi|339010649|ref|ZP_08643219.1| putative holliday junction resolvase [Brevibacillus laterosporus
LMG 15441]
gi|421875423|ref|ZP_16307015.1| putative Holliday junction resolvase [Brevibacillus laterosporus
GI-9]
gi|338772804|gb|EGP32337.1| putative holliday junction resolvase [Brevibacillus laterosporus
LMG 15441]
gi|372455631|emb|CCF16564.1| putative Holliday junction resolvase [Brevibacillus laterosporus
GI-9]
Length = 137
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 69/132 (52%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S G+ + + ++ ++ + ++ E + F++GLPK+
Sbjct: 4 LGLDVGEKTIGVAISDELGWTAQGIETIRRSSKENDFGRIEEWIATYQVQAFVVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P+ ++ A +L R G V+L DE T+ A +I+ +S+ R+ D
Sbjct: 64 NGTIGPKGEYCQAFAEQLKERT---GLPVHLWDERLTTMAAEKMLISADVSRQKRKKVID 120
Query: 183 AYAAVILLERYF 194
AAV++L+ Y
Sbjct: 121 KMAAVLILQGYL 132
>gi|160872335|ref|ZP_02062467.1| conserved hypothetical protein [Rickettsiella grylli]
gi|159121134|gb|EDP46472.1| conserved hypothetical protein [Rickettsiella grylli]
Length = 139
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 67/134 (50%), Gaps = 10/134 (7%)
Query: 66 LGVDLGLSRTGLAL--SKGFCVRPLTVLKLRGEKLELQLLEIAQ---REETDEFIIGLPK 120
+G D GL G+A+ + +PLT L ++ L + EIAQ D ++G+P
Sbjct: 8 IGFDFGLKYIGVAIGQTSPSLAQPLTNLSVKKGNLPWE--EIAQLLKMWSPDVIVVGVPF 65
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R+ L R V+ +DE T+ EA R+ +G K+ ++
Sbjct: 66 NMDGTEQPITREARNFLMELKNRFEI---PVFPVDERLTTVEARSRLFALGGYKALKKKS 122
Query: 181 TDAYAAVILLERYF 194
D+ AA +++E +
Sbjct: 123 IDSIAAQLIVEIWL 136
>gi|317122056|ref|YP_004102059.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
12885]
gi|315592036|gb|ADU51332.1| Holliday junction resolvase YqgF [Thermaerobacter marianensis DSM
12885]
Length = 326
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 66/133 (49%), Gaps = 8/133 (6%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGE-KLELQLLEIAQREETDEFIIGLPKSW 122
LG+DLG G+A+S +G RPL L R + + Q+ ++ +R ++G P+
Sbjct: 4 LGLDLGSRVIGVAISDPEGIVARPLGSLPRRTDAENAAQVADLVRRHGAGGVVVGWPRRL 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGW-RVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG+ P++ A R A E G RV L DE ++ EA +I LS+ R+
Sbjct: 64 DGTRGPEAE----AAERFADALREAGVPRVTLWDERLSTVEAERVLIAADLSRRRRKQII 119
Query: 182 DAYAAVILLERYF 194
D AA ++L+ +
Sbjct: 120 DRMAATVILQAFL 132
>gi|19704033|ref|NP_603595.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296327898|ref|ZP_06870434.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
gi|32130042|sp|Q8RFJ7.1|RUVX_FUSNN RecName: Full=Putative Holliday junction resolvase
gi|19714225|gb|AAL94894.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 25586]
gi|296155032|gb|EFG95813.1| DNA integration/recombination/invertion protein [Fusobacterium
nucleatum subsp. nucleatum ATCC 23726]
Length = 138
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 66/135 (48%), Gaps = 7/135 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+ +D+G R G+A S G PL + + K ++ EI + +T+ ++G+PKS D
Sbjct: 5 IALDIGDVRIGVARSDIMGIIASPLETINRKKVKSVKRIAEICKENDTNLVVVGIPKSLD 64
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS--AEAVDRMINMGLSKSARQTKT 181
G E Q+ KVR +L + + +DE ++ A+ + + +N + R+
Sbjct: 65 GEEKRQAEKVREYIEKL--KKEIENLEIIEVDERFSTVIADNILKELNKNGAIEKRKV-V 121
Query: 182 DAYAAVILLERYFSM 196
D AA I+L+ Y M
Sbjct: 122 DKVAASIILQTYLDM 136
>gi|340354715|ref|ZP_08677416.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Sporosarcina newyorkensis 2681]
gi|339623114|gb|EGQ27620.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Sporosarcina newyorkensis 2681]
Length = 139
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 69/135 (51%), Gaps = 10/135 (7%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPLTVLKLRGEK----LELQLLEIAQREETDEFIIGLP 119
+G+D+G G+A+S G + + + +K+ E+ LE ++ E+ + E EF++G P
Sbjct: 4 MGLDVGTKTVGIAISDGLGWTAQGIETIKINEEEGLFGLE-RIEELTKEYEVHEFVVGYP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ + + P+ A L + G+ V L DE T+ A +I +S+ R++
Sbjct: 63 KNMNNTIGPRGQASEQYAESLREKF---GFPVVLWDERLTTMAAERVLIEADVSRKKRKS 119
Query: 180 KTDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 120 VIDKMAAVMILQGYL 134
>gi|330995382|ref|ZP_08319292.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT
11841]
gi|329575877|gb|EGG57401.1| RNAse H domain protein, YqgF family [Paraprevotella xylaniphila YIT
11841]
Length = 141
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +D G RTG+A++ + + + + ++ Q+E + ++G PK
Sbjct: 2 GRVLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDFIVSYVQQEHVERIVVGQPKQA 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
+G ++ ++ S RL R E V DE TS A M+ GL K ARQ K
Sbjct: 62 NGEDSENMGRINSFVRRLHERLPE--IPVEFFDERYTSVLAHQAMLQGGLRKKARQNKAL 119
Query: 181 TDAYAAVILLE 191
D +A I+L+
Sbjct: 120 VDEISATIILQ 130
>gi|452962634|gb|EME67751.1| putative Holliday junction resolvase [Magnetospirillum sp. SO-1]
Length = 155
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 62/137 (45%), Gaps = 6/137 (4%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEF 114
SL R LG+DLG GLALS + T+ +++ K QLL + R++
Sbjct: 12 SLARDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRIKFTKDAEQLLAVVDRQDVGGL 71
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSK 174
++GLP DG E P+ VRS A L A R + DE +++ ++ S+
Sbjct: 72 VLGLPVEMDGFEGPRCQSVRSFAANL---ARLRDMPIAYWDERLSTSAVTRTLLEADSSR 128
Query: 175 SARQTKTDAYAAVILLE 191
R D AA +L+
Sbjct: 129 KRRAEVVDKMAAAYILQ 145
>gi|451813195|ref|YP_007449648.1| holliday junction resolvase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
gi|451779164|gb|AGF50044.1| holliday junction resolvase [Candidatus Kinetoplastibacterium
blastocrithidii TCC012E]
Length = 141
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 61/132 (46%), Gaps = 13/132 (9%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L D G+ + G+AL + RPL +++ + + ++ +E D IIGLP +
Sbjct: 10 LAFDFGIKKIGVALGNTLTLKARPLEIIQSEKNSIRFERIDFLLKEWGVDHVIIGLPLNK 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE + + R A ++ R +V +DE +S EA + S D
Sbjct: 70 DGSEQEMTFRCRRFANQVNGRF---NIKVDFVDERYSSIEAQSLL-------SKNNAIED 119
Query: 183 AYAAVILLERYF 194
A AA ++L+ YF
Sbjct: 120 AVAAAVILQNYF 131
>gi|322386556|ref|ZP_08060183.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
ATCC 51100]
gi|417921553|ref|ZP_12565044.1| RNAse H domain protein, YqgF family [Streptococcus cristatus ATCC
51100]
gi|321269475|gb|EFX52408.1| crossover junction endodeoxyribonuclease [Streptococcus cristatus
ATCC 51100]
gi|342834236|gb|EGU68511.1| RNAse H domain protein, YqgF family [Streptococcus cristatus ATCC
51100]
Length = 139
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 75/137 (54%), Gaps = 13/137 (9%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++++ EK + +L E+ ++ + D+F++GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKEQFGFERLTELVEQYKVDKFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYL-LDEHRTSAEAVDRMI--NMGLSKSAR 177
+ + + P+ ++ ++A + +++ + + R + A +RM+ +S+S R
Sbjct: 64 NMNNTSGPRVEASKAYGEKIA-----QLFQIPVEYQDERLTTVAAERMLIEQADVSRSKR 118
Query: 178 QTKTDAYAAVILLERYF 194
+ D AA ++L+ Y
Sbjct: 119 KKVIDKLAAQLILQNYL 135
>gi|381397407|ref|ZP_09922819.1| Holliday junction resolvase [Microbacterium laevaniformans OR221]
gi|380775392|gb|EIC08684.1| Holliday junction resolvase [Microbacterium laevaniformans OR221]
Length = 157
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 70/141 (49%), Gaps = 6/141 (4%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFI 115
S +R G LG+D+G +R G+A G P+ + R + + +A+ E +
Sbjct: 2 SGFRPGVRLGIDVGKARIGVARCDRDGLLAVPVETVA-RTDAAAAHIARLAEEYSAMELL 60
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
+GLP S G ET ++ R+ A VRAA G V L+DE ++ A + + G S+
Sbjct: 61 VGLPISLSGGETASTDDARAFARE--VRAAS-GLEVRLVDERLSTVSAHAALRDAGRSQR 117
Query: 176 ARQTKTDAYAAVILLERYFSM 196
+ + D AAV+LL++ +
Sbjct: 118 SSRRIVDQVAAVVLLQQAIDV 138
>gi|110637112|ref|YP_677319.1| Holliday junction resolvase-like protein [Cytophaga hutchinsonii
ATCC 33406]
gi|118597208|sp|Q11X87.1|RUVX_CYTH3 RecName: Full=Putative Holliday junction resolvase
gi|110279793|gb|ABG57979.1| possible Holliday junction resolvase [Cytophaga hutchinsonii ATCC
33406]
Length = 152
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 67/147 (45%), Gaps = 4/147 (2%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L D G R G+A + + + + + + + L + E + F++GLP++
Sbjct: 5 LAFDFGTKRIGIASTDPMQIIANALDTVHPKDVVVYLKKYLNTEPVEAFVVGLPRTLQNE 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT--DA 183
E+ + V++ + + +Y +DE TS+ A D M+ G+SK R+ K D
Sbjct: 65 ESSNAANVKAFINLIKKNFPQ--TPIYGVDERFTSSMAFDTMLAGGVSKKGRRDKATIDK 122
Query: 184 YAAVILLERYFSMSGQGTEIVLPKRVD 210
+A I+L+ + GT ++ K D
Sbjct: 123 ISATIILQSFMEQKQNGTATMIFKPDD 149
>gi|255319727|ref|ZP_05360935.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262379992|ref|ZP_06073147.1| endonuclease [Acinetobacter radioresistens SH164]
gi|421464573|ref|ZP_15913263.1| RNAse H domain protein, YqgF family [Acinetobacter radioresistens
WC-A-157]
gi|255303256|gb|EET82465.1| conserved hypothetical protein [Acinetobacter radioresistens SK82]
gi|262298186|gb|EEY86100.1| endonuclease [Acinetobacter radioresistens SH164]
gi|400205326|gb|EJO36307.1| RNAse H domain protein, YqgF family [Acinetobacter radioresistens
WC-A-157]
Length = 147
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLP 119
G + D G + G+A+ + PLT+ ++ G LL+I + + D F++GLP
Sbjct: 8 GLIMAFDFGTQKMGMAIGQAAIQSANPLTLFPMKDGIPNWEHLLKIVKEWQPDLFLVGLP 67
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ D SE+ S + R A RL + ++DE T+ EA + R+
Sbjct: 68 LNMDESESELSARARKFARRL---RHQTNIETLMVDERLTTREARSELSQYQAQGGNRKL 124
Query: 180 KTDAYAAVILLERYF 194
D+ AA +L+E ++
Sbjct: 125 AADSIAAALLIESWY 139
>gi|241204443|ref|YP_002975539.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
bv. trifolii WSM1325]
gi|240858333|gb|ACS56000.1| Holliday junction resolvase YqgF [Rhizobium leguminosarum bv.
trifolii WSM1325]
Length = 164
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 12/131 (9%)
Query: 67 GVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
G+DLG GL++S + F P TV++ ++ Q LL+ AQ E+ F+IGLP +
Sbjct: 21 GLDLGTKTIGLSMSDLGRRFAT-PRTVIRRVKFTIDAQALLDFAQSEKVAGFVIGLPMNM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLL--DEHRTSAEAVDRMINMGLSKSARQTK 180
DGS P+ R+ VR E+ + + DE ++ A ++ M +S++ R +
Sbjct: 80 DGSAGPRVQATRAF-----VRNMEQKTALPFVYWDERLSTVAAERTLLEMDVSRAKRAER 134
Query: 181 TDAYAAVILLE 191
D+ AA +L+
Sbjct: 135 IDSAAASFILQ 145
>gi|393758917|ref|ZP_10347736.1| Holliday junction resolvase-like protein [Alcaligenes faecalis
subsp. faecalis NCIB 8687]
gi|393162813|gb|EJC62868.1| Holliday junction resolvase-like protein [Alcaligenes faecalis
subsp. faecalis NCIB 8687]
Length = 135
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 61/132 (46%), Gaps = 14/132 (10%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L D GL + G+AL RP T+L+ + +E +E + D ++GLP +
Sbjct: 9 LAFDYGLKKIGVALGNTLTRQARPYTILRPVTREQRFAAIEALLKEWQPDRVVVGLPLTL 68
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG E S + R A +L R G V L+DE +S EA + + N D
Sbjct: 69 DGGEQYASLRCRRFANQLHGR---YGVAVDLVDERGSSMEAQELLGN--------NDDDD 117
Query: 183 AYAAVILLERYF 194
A AA ++L+RY
Sbjct: 118 AMAACVILQRYL 129
>gi|307946447|ref|ZP_07661782.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4]
gi|307770111|gb|EFO29337.1| putative Holliday junction resolvase [Roseibium sp. TrichSKD4]
Length = 160
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 64/137 (46%), Gaps = 6/137 (4%)
Query: 66 LGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+G+DLG GLALS +G T+ + + + +LL+I ++E ++GLP +
Sbjct: 23 IGLDLGTKTIGLALSDLGRGIATPMETIRRKKFTQDAEKLLDICAKQEVSGLVLGLPLNM 82
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE P++ R+ L+ + + DE ++A ++ S++ R D
Sbjct: 83 DGSEGPRAQATRAFCRNLSQKTE---LPITYWDERLSTAAVTRTLLEADSSRAKRAEVVD 139
Query: 183 AYAAVILLERYFSMSGQ 199
AA +L+ + G
Sbjct: 140 KMAAAFILQGFLDRLGH 156
>gi|297544525|ref|YP_003676827.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
gi|296842300|gb|ADH60816.1| Holliday junction resolvase YqgF [Thermoanaerobacter mathranii
subsp. mathranii str. A3]
Length = 139
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/138 (28%), Positives = 67/138 (48%), Gaps = 17/138 (12%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+G+D+G G+A+S G + LT +K K + + + +I E I+GLPK+
Sbjct: 4 MGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVY-----LLDEHRTSAEAVDRMINMG-LSKSA 176
+G+ PQ KV VR E + + L DE T+ EA +I +S++
Sbjct: 64 NGTLGPQGQKV--------VRFVEHLKKAFSIPIILWDERLTTVEAERVLIEKADISRAK 115
Query: 177 RQTKTDAYAAVILLERYF 194
R+ D AA+++L+ Y
Sbjct: 116 RKEVIDKLAAILILQNYL 133
>gi|167855791|ref|ZP_02478544.1| Holliday junction resolvase-like protein [Haemophilus parasuis
29755]
gi|167853070|gb|EDS24331.1| Holliday junction resolvase-like protein [Haemophilus parasuis
29755]
Length = 138
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPK 120
G S+G +G S TG A + L+ K + G Q+ ++ + + D ++GLP
Sbjct: 11 GTNSIGCAVGQSITGTA-------QGLSAFKAQDGIPNWEQIGKVIAQWQPDLLVVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + + A RL R V L DE T+ EA + G K+ ++ K
Sbjct: 64 NMDGTEQPLTQRAKKFAKRLNGRF---NLPVELQDERLTTVEAKSEIFTRGGFKALKKGK 120
Query: 181 TDAYAAVILLERYF 194
DA +A ++LE +F
Sbjct: 121 VDAISACLILESWF 134
>gi|167037467|ref|YP_001665045.1| Holliday junction resolvase-like protein [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|320115881|ref|YP_004186040.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
finnii Ako-1]
gi|226695311|sp|B0K996.1|RUVX_THEP3 RecName: Full=Putative Holliday junction resolvase
gi|166856301|gb|ABY94709.1| Holliday junction resolvase YqgF [Thermoanaerobacter
pseudethanolicus ATCC 33223]
gi|319928972|gb|ADV79657.1| Holliday junction resolvase YqgF [Thermoanaerobacter brockii subsp.
finnii Ako-1]
Length = 139
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 7/133 (5%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+G+D+G G+A+S G + LT +K K + + + +I E I+GLPK+
Sbjct: 4 MGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQTKT 181
+G+ PQ KV L + L DE T+ EA +I +S++ R+
Sbjct: 64 NGTLGPQGQKVMRFVEHL---KEAFSIPIILWDERLTTVEAQRVLIEKADISRAKRKEVI 120
Query: 182 DAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 121 DKLAAVLILQNYL 133
>gi|167040129|ref|YP_001663114.1| Holliday junction resolvase-like protein [Thermoanaerobacter sp.
X514]
gi|256752542|ref|ZP_05493398.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
CCSD1]
gi|300914213|ref|ZP_07131529.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
gi|307724552|ref|YP_003904303.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
gi|226695312|sp|B0K0Q3.1|RUVX_THEPX RecName: Full=Putative Holliday junction resolvase
gi|166854369|gb|ABY92778.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X514]
gi|256748608|gb|EEU61656.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus
CCSD1]
gi|300889148|gb|EFK84294.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X561]
gi|307581613|gb|ADN55012.1| Holliday junction resolvase YqgF [Thermoanaerobacter sp. X513]
Length = 139
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 17/138 (12%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+G+D+G G+A+S G + LT +K K + + + +I E I+GLPK+
Sbjct: 4 MGLDVGDKTIGIAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKNL 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAER-----GWRVYLLDEHRTSAEAVDRMINMG-LSKSA 176
+G+ PQ KV VR E + L DE T+ EA +I +S++
Sbjct: 64 NGTLGPQGQKV--------VRFVEHLKEAINIPIILWDERLTTVEAERVLIEKADISRAK 115
Query: 177 RQTKTDAYAAVILLERYF 194
R+ D AAV++L+ Y
Sbjct: 116 RKEVIDKLAAVLILQNYL 133
>gi|297584728|ref|YP_003700508.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10]
gi|297143185|gb|ADH99942.1| Holliday junction resolvase YqgF [Bacillus selenitireducens MLS10]
Length = 138
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLR----GEKLELQ-LLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S F V R E ++Q ++++ + E ++ ++GLPK
Sbjct: 4 IGLDVGTKTIGIAVSDPFGWTAQGVETHRRKKGKENEDVQRIVDLVEEEGAEQIVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ +G+ P ++ A L G V L DE T+A A +I+ +S+ R+
Sbjct: 64 NMNGTIGPSGELCQAFAESLK---EATGLPVILWDERLTTAAAEKTLISADVSRKKRKNV 120
Query: 181 TDAYAAVILLERYF 194
D AAV +L+ Y
Sbjct: 121 IDKMAAVFILQGYL 134
>gi|149185993|ref|ZP_01864308.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21]
gi|148830554|gb|EDL48990.1| hypothetical protein ED21_24706 [Erythrobacter sp. SD-21]
Length = 162
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/91 (34%), Positives = 51/91 (56%), Gaps = 3/91 (3%)
Query: 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160
+L EI ++GLP++ DG+E P++ R+ A LA RA G V L DE ++
Sbjct: 64 KLREIVTARSIAGLVVGLPRNMDGTEGPRAQASRAYAKNLA-RA--FGLPVLLWDERWST 120
Query: 161 AEAVDRMINMGLSKSARQTKTDAYAAVILLE 191
+ A MI +S++ R K D++AA ++L+
Sbjct: 121 SSAESAMIGQDMSRAKRAEKIDSHAAAVILQ 151
>gi|189347877|ref|YP_001944406.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245]
gi|189342024|gb|ACD91427.1| Holliday junction resolvase YqgF [Chlorobium limicola DSM 245]
Length = 142
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 66/139 (47%), Gaps = 4/139 (2%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117
SL R + +D G R G A S + V + +L +L ++A+ EE D+ ++G
Sbjct: 2 SLSRKKRIVAIDFGTKRIGFAESDPLQLFAQPVGTVDRAELFEKLEQMARNEEIDKILVG 61
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
P + DG++ + + LA+ G V +DEHR+S +A+ + G+S+ R
Sbjct: 62 YPLNDDGTQNRMTGVIDRFIEELALGFP--GLPVERVDEHRSSRDAMQILAASGISRKER 119
Query: 178 QTK--TDAYAAVILLERYF 194
K D AA ++L Y
Sbjct: 120 NRKGRLDCAAACVILREYL 138
>gi|222085624|ref|YP_002544154.1| Holliday junction resolvase-like protein [Agrobacterium radiobacter
K84]
gi|398377965|ref|ZP_10536134.1| RNAse H-fold protein YqgF [Rhizobium sp. AP16]
gi|254767490|sp|B9JDM7.1|RUVX_AGRRK RecName: Full=Putative Holliday junction resolvase
gi|221723072|gb|ACM26228.1| holliday junction resolvase protein [Agrobacterium radiobacter K84]
gi|397725892|gb|EJK86336.1| RNAse H-fold protein YqgF [Rhizobium sp. AP16]
Length = 164
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 63/128 (49%), Gaps = 6/128 (4%)
Query: 67 GVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
G+DLG GLA+S + F + +++ + LL A++E+ F+IGLP + D
Sbjct: 21 GLDLGTKTIGLAMSDLGRRFATPRPVIKRVKFTQDAQTLLAFAEKEKVAAFVIGLPMNMD 80
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
GS P+ R+ +A + A DE ++ A ++ M +S++ R + D+
Sbjct: 81 GSTGPRVQATRAFVRSMADKTA---LPFVYWDERLSTVAAERALLEMDVSRAKRAERIDS 137
Query: 184 YAAVILLE 191
AA +L+
Sbjct: 138 AAASFILQ 145
>gi|335035049|ref|ZP_08528392.1| hypothetical protein AGRO_2375 [Agrobacterium sp. ATCC 31749]
gi|333793480|gb|EGL64834.1| hypothetical protein AGRO_2375 [Agrobacterium sp. ATCC 31749]
Length = 159
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 67 GVDLGLSRTGLA---LSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
G+DLG GLA LS+ F + +++ + LL A++E+ F+IGLP + D
Sbjct: 21 GLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAQMLLAFAEKEKVAAFVIGLPINMD 80
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKTD 182
GS P++ R+ + E+ ++ + R S A +R ++ M +S++ R + D
Sbjct: 81 GSAGPRAQATRAFVRTM----GEKTALPFIYWDERLSTVAAERALLEMDVSRAKRAERID 136
Query: 183 AYAAVILLE 191
+ AA +L+
Sbjct: 137 SAAASFILQ 145
>gi|213966117|ref|ZP_03394304.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
gi|213951215|gb|EEB62610.1| conserved hypothetical protein [Corynebacterium amycolatum SK46]
Length = 167
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 43/141 (30%), Positives = 67/141 (47%), Gaps = 9/141 (6%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV--RPL-TVLKLRGEKLEL-----QLLEIAQREETDEF 114
G LG+D+G R G+A+S C+ P+ TV + G K +L+E+A E E
Sbjct: 17 GRRLGIDVGDVRVGVAVSDPDCILATPVETVTRATGRKDPDGPDIDRLVELATELEVVEI 76
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSK 174
++G+P DGS + K V RL R +R V+ DE T+ A R+ G+
Sbjct: 77 VVGMPLMLDGSFGTSARKATDVGFRLQRRLGDR-VVVHYADERMTTVMAQSRLHAAGIDV 135
Query: 175 SARQTKTDAYAAVILLERYFS 195
+ + D AAV +L+ +
Sbjct: 136 KSGRKIIDQAAAVEILQSWLD 156
>gi|348030143|ref|YP_004872829.1| holliday junction resolvase-like protein [Glaciecola
nitratireducens FR1064]
gi|347947486|gb|AEP30836.1| holliday junction resolvase-like protein [Glaciecola
nitratireducens FR1064]
Length = 139
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 63/134 (47%), Gaps = 6/134 (4%)
Query: 65 SLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKS 121
++ D G+ G+A+ + PL+ LK Q + ++ + D ++GLP +
Sbjct: 6 TIAFDYGVKSIGVAVGQKITGTASPLSALKANDGIPNWQTIADVFAEWQPDNLLVGLPLN 65
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DGSE + + R A RL R G V+ DE ++ +A R+ +G K + K
Sbjct: 66 MDGSEQEITQRARKFANRLHGRF---GLTVHTHDERLSTVDAKARLFELGGFKKLTKEKV 122
Query: 182 DAYAAVILLERYFS 195
D+ +A ++ E + S
Sbjct: 123 DSVSACLIFESWVS 136
>gi|323142904|ref|ZP_08077615.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT
12066]
gi|322417332|gb|EFY07955.1| RNAse H domain protein, YqgF family [Succinatimonas hippei YIT
12066]
Length = 140
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 65/133 (48%), Gaps = 7/133 (5%)
Query: 66 LGVDLGLSRTGLALSKGFCVR--PLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
L D G++ G+A+ F + PL +K R G Q+ + + + ++G P +
Sbjct: 4 LAFDFGINSIGVAVGNEFTMSATPLEAVKARDGIPNADQINALFKEWQPSYIVVGYPINM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN-MGLSKSARQTKT 181
DG++ + K R RLA + +VY DE T+A+A +R+ + G A + K
Sbjct: 64 DGTKEELTFKARKFGNRLADKFK---LKVYFKDERLTTADAKERIFSQYGYKGLASKGKI 120
Query: 182 DAYAAVILLERYF 194
D +A ++LE +F
Sbjct: 121 DCVSAALILEAFF 133
>gi|424870319|ref|ZP_18293981.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. viciae
WSM1455]
gi|393166020|gb|EJC66067.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. viciae
WSM1455]
Length = 164
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 12/131 (9%)
Query: 67 GVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
G+DLG GL++S + F P TV++ ++ Q LL+ AQ E+ F+IGLP +
Sbjct: 21 GLDLGTKTIGLSMSDLGRRFAT-PRTVIRRVKFTIDAQALLDFAQSEKVAGFVIGLPMNM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLL--DEHRTSAEAVDRMINMGLSKSARQTK 180
DGS P+ R+ VR E+ + + DE ++ A ++ M +S++ R +
Sbjct: 80 DGSAGPRVQATRAF-----VRNMEQKTALPFVYWDERLSTVAAERTLLEMDVSRAKRAER 134
Query: 181 TDAYAAVILLE 191
D+ AA +L+
Sbjct: 135 IDSAAASFILQ 145
>gi|258515480|ref|YP_003191702.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM
771]
gi|257779185|gb|ACV63079.1| Holliday junction resolvase YqgF [Desulfotomaculum acetoxidans DSM
771]
Length = 139
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 70/133 (52%), Gaps = 7/133 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGE-KLEL-QLLEIAQREETDEFIIGLPKS 121
+ +DLG G+ALS G+ + L ++ +G+ K EL +L EI ++ E ++ ++GLPK+
Sbjct: 4 MCLDLGEKTIGIALSDPFGWTAQGLEIINRKGQPKQELNRLREIIKQYEVEKVVVGLPKN 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
+G+ PQ+ K L + G V DE ++ A +++ +S+ R+
Sbjct: 64 MNGTTGPQAEKALDFIEYLKRKL---GLVVEAWDERLSTVAAERILLSADISRGKRKKVI 120
Query: 182 DAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 121 DKMAAAVILQGYL 133
>gi|414564964|ref|YP_006043925.1| Holliday junction resolvase [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
gi|338848029|gb|AEJ26241.1| Holliday junction resolvase [Streptococcus equi subsp.
zooepidemicus ATCC 35246]
Length = 136
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/140 (25%), Positives = 71/140 (50%), Gaps = 13/140 (9%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++++ +K + +L E+ ++ + D F+IGLPK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIRINEDKQDFGFDRLAELVKQYQVDRFVIGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINMG-LSKSAR 177
+ + + P+ ++ ++ E + V DE T+ EA +I +S+ R
Sbjct: 61 NMNNTSGPRVEASKAYGDKI-----EELFHIPVSYQDERLTTVEAERMLIEQADISRGKR 115
Query: 178 QTKTDAYAAVILLERYFSMS 197
+ D AA ++L+ Y +
Sbjct: 116 KKVIDKLAAQLILQNYLDCN 135
>gi|326390159|ref|ZP_08211720.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
200]
gi|392941102|ref|ZP_10306746.1| RNAse H-fold protein YqgF [Thermoanaerobacter siderophilus SR4]
gi|325993807|gb|EGD52238.1| Holliday junction resolvase YqgF [Thermoanaerobacter ethanolicus JW
200]
gi|392292852|gb|EIW01296.1| RNAse H-fold protein YqgF [Thermoanaerobacter siderophilus SR4]
Length = 139
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 66/138 (47%), Gaps = 17/138 (12%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+G+D+G G+A+S G + LT +K K + + + +I E I+GLPK+
Sbjct: 4 MGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAER-----GWRVYLLDEHRTSAEAVDRMINMG-LSKSA 176
+G+ PQ KV VR E + L DE T+ EA +I +S++
Sbjct: 64 NGTLGPQGQKV--------VRFVEHLKEAINIPIILWDERLTTVEAERVLIEKADISRAK 115
Query: 177 RQTKTDAYAAVILLERYF 194
R+ D AAV++L+ Y
Sbjct: 116 RKEVIDKLAAVLILQNYL 133
>gi|225871407|ref|YP_002747354.1| Holliday junction resolvase [Streptococcus equi subsp. equi 4047]
gi|254767526|sp|C0MAR3.1|RUVX_STRE4 RecName: Full=Putative Holliday junction resolvase
gi|225700811|emb|CAW95508.1| putative Holliday junction resolvase [Streptococcus equi subsp.
equi 4047]
Length = 139
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 70/138 (50%), Gaps = 13/138 (9%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++++ +K + +L E+ ++ + D F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIRINEDKQDFGFDRLAELVKQYQVDRFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINMG-LSKSAR 177
+ + + P+ ++ ++ E + V DE T+ EA +I +S+ R
Sbjct: 64 NMNNTSGPRVEASKAYGDKI-----EELFHIPVSYQDERLTTVEAERMLIEQADISRGKR 118
Query: 178 QTKTDAYAAVILLERYFS 195
+ D AA ++L+ Y
Sbjct: 119 KKVIDKLAAQLILQNYLD 136
>gi|421856641|ref|ZP_16289004.1| putative Holliday junction resolvase [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
gi|403187932|dbj|GAB75205.1| putative Holliday junction resolvase [Acinetobacter radioresistens
DSM 6976 = NBRC 102413]
Length = 147
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/135 (26%), Positives = 63/135 (46%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLP 119
G + D G + G+A+ + PLT+ ++ G LL+I + + D F++GLP
Sbjct: 8 GLIMAFDFGTQKMGMAIGQAAIQSANPLTLFPMKDGIPNWEHLLKIVKEWQPDLFLVGLP 67
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ D SE+ S + R A RL + ++DE T+ EA + R+
Sbjct: 68 LNMDESESELSARARKFARRL---RHQTNIETLMVDERLTTREARSELNQYQAQGGNRKL 124
Query: 180 KTDAYAAVILLERYF 194
D+ AA +L+E ++
Sbjct: 125 AADSIAAALLIESWY 139
>gi|422021983|ref|ZP_16368492.1| Holliday junction resolvase-like protein [Providencia sneebia DSM
19967]
gi|414097733|gb|EKT59386.1| Holliday junction resolvase-like protein [Providencia sneebia DSM
19967]
Length = 139
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLPK 120
G S+GV +G TG A R LT LK + + +E +E + +I GLP
Sbjct: 12 GTKSIGVAIGQEITGTA-------RSLTSLKAHDGRPDWSQIEKLLKEWQPQLVIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E +++ R+ A R+ R G +V L DE ++ EA + G ++ + K
Sbjct: 65 NMDGTEQLVTSQARNFANRIHGRF---GVKVELHDERLSTVEAKAGLFERGGYRALSKGK 121
Query: 181 TDAYAAVILLERYF 194
D+ +AVI+LE +F
Sbjct: 122 VDSASAVIILESWF 135
>gi|116251833|ref|YP_767671.1| Holliday junction resolvase-like protein [Rhizobium leguminosarum
bv. viciae 3841]
gi|146325598|sp|Q1MHJ8.1|RUVX_RHIL3 RecName: Full=Putative Holliday junction resolvase
gi|115256481|emb|CAK07565.1| putative Holliday junction resolvase [Rhizobium leguminosarum bv.
viciae 3841]
Length = 164
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 12/131 (9%)
Query: 67 GVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
G+DLG GL++S + F P TV++ ++ Q LL+ AQ E+ F+IGLP +
Sbjct: 21 GLDLGTKTIGLSMSDLGRRFAT-PRTVIRRVKFAIDAQALLDFAQSEKVAGFVIGLPMNM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLL--DEHRTSAEAVDRMINMGLSKSARQTK 180
DGS P+ R+ VR E+ + + DE ++ A ++ M +S++ R +
Sbjct: 80 DGSAGPRVQATRAF-----VRNMEQKTALPFVYWDERLSTVAAERTLLEMDVSRAKRAER 134
Query: 181 TDAYAAVILLE 191
D+ AA +L+
Sbjct: 135 IDSAAASFILQ 145
>gi|110004986|emb|CAK99317.1| putative holliday junction resolvase yqgf protein [Spiroplasma
citri]
Length = 139
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Query: 64 FSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQ-------REETDEFII 116
+ L VD+G GLA S+G V + E L+ AQ E+ + I+
Sbjct: 4 YYLAVDVGSKTLGLATSQGLIATGYGVYRFP----ENDFLQAAQYLAGLITTEQFSDIIV 59
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
G PK+ + + P++ V L + + ++L+DE T+ +A M+ LS+
Sbjct: 60 GYPKNMNNTIGPRALMVSDFVNLLK-QLLDPTITIHLVDERLTTHQAHQIMLEANLSRQK 118
Query: 177 RQTKTDAYAAVILLERYF 194
R+ K D+ AA ++LE Y
Sbjct: 119 RKQKKDSLAAQLILETYL 136
>gi|424881351|ref|ZP_18304983.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. trifolii
WU95]
gi|392517714|gb|EIW42446.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. trifolii
WU95]
Length = 164
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 68/131 (51%), Gaps = 12/131 (9%)
Query: 67 GVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
G+DLG GL++S + F P TV++ ++ Q LL+ AQ E+ F+IGLP +
Sbjct: 21 GLDLGTKTIGLSMSDLGRRFAT-PRTVIRRVKFTIDAQALLDFAQSEKVAGFVIGLPMNM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLL--DEHRTSAEAVDRMINMGLSKSARQTK 180
DGS P+ R+ VR E+ + + DE ++ A ++ M +S++ R +
Sbjct: 80 DGSAGPRVQATRAF-----VRNMEQKTALPFVYWDERLSTVAAERTLLEMDVSRAKRAER 134
Query: 181 TDAYAAVILLE 191
D+ AA +L+
Sbjct: 135 IDSAAASFILQ 145
>gi|406994513|gb|EKE13498.1| hypothetical protein ACD_13C00014G0003 [uncultured bacterium]
Length = 126
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/131 (25%), Positives = 66/131 (50%), Gaps = 12/131 (9%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSWDG 124
LG+D G S+ G+A++ G P+ V++ K+ ++ L+ I + ++ ++G+ + G
Sbjct: 4 LGIDYGRSKIGVAIADGPLAEPMQVIRYSNTKILMEKLQKIIKDNNIEKIVVGVSEGKIG 63
Query: 125 SETPQ-SNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
E+ + ++ ++ + + A E + D R S EA G+S+ R DA
Sbjct: 64 EESKKFASSIQPLIQSTIILADE---TLSTQDAQRMSREA-------GISQKKRHEMEDA 113
Query: 184 YAAVILLERYF 194
YAA I+L+ Y
Sbjct: 114 YAACIMLQNYL 124
>gi|395775269|ref|ZP_10455784.1| Holliday junction resolvase-like protein [Streptomyces acidiscabies
84-104]
Length = 150
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 60 WRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFII 116
R G L +D+G +R G+A + V + G+ + +L ++A E E ++
Sbjct: 1 MRRGRRLAIDVGDARIGVASCDPDGILATPVETVSGKDVPAARRRLKQLADEYEPIEIVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR A LA A V L+DE T+ A + G+
Sbjct: 61 GLPRSLKGGEGPAAVKVRGFAEALA--KAVDPIPVRLVDERMTTVTAAQGLRASGVKSKK 118
Query: 177 RQTKTDAYAAVILLERYF 194
++ D AAVI+L++
Sbjct: 119 GRSVIDQAAAVIILQQAL 136
>gi|167770376|ref|ZP_02442429.1| hypothetical protein ANACOL_01719 [Anaerotruncus colihominis DSM
17241]
gi|167667383|gb|EDS11513.1| RNAse H domain protein, YqgF family [Anaerotruncus colihominis DSM
17241]
Length = 142
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 42/135 (31%), Positives = 60/135 (44%), Gaps = 10/135 (7%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L VD G +RTGLA + P+ VL + LQ + A E + E I+G P +
Sbjct: 4 LAVDFGDARTGLACCDRTEYLASPIGVLHDKDFGSVLQKVAAAASEYDVQEIIVGHPINM 63
Query: 123 DGSETPQSNKVRSVAGRLA--VRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+G+E P++ AG+LA V R W DE T+ A + R+
Sbjct: 64 NGTEGPRAQLCADFAGQLAKLVTVPVRLW-----DERGTTVSATGFLNATNTRGKKRKEV 118
Query: 181 TDAYAAVILLERYFS 195
D AA I+LE Y +
Sbjct: 119 IDEVAATIILESYLN 133
>gi|456386025|gb|EMF51578.1| ruvX protein [Streptomyces bottropensis ATCC 25435]
Length = 168
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R + +L ++ E I+
Sbjct: 15 MRRGRRLALDVGDARIGVASCDPDGILATPVETVPGRDVPAAQRRLRQLVDEYVPIEVIV 74
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR A LA A V LLDE T+ A + G+
Sbjct: 75 GLPRSLKGGEGPAAVKVRGFAQELARMIAP--VPVRLLDERMTTVTAGQGLRASGVKSKK 132
Query: 177 RQTKTDAYAAVILLERYFS---MS----GQGTEIVL 205
++ D AAVI+L++ MS G+G E+V+
Sbjct: 133 GRSVIDQAAAVIILQQALESERMSGKAPGEGVEVVI 168
>gi|395779907|ref|ZP_10460375.1| RNAse H-fold protein YqgF [Bartonella washoensis 085-0475]
gi|395419657|gb|EJF85953.1| RNAse H-fold protein YqgF [Bartonella washoensis 085-0475]
Length = 159
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 67 GVDLGLSRTGLALS-KG-FCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSWD 123
G+DLG G+A+S +G F P +VL+ + L+ + L++I RE IIGLP + +
Sbjct: 21 GLDLGTKTIGIAVSDRGLFLSNPRSVLQRKKFMLDARTLIQIFDRENVGVIIIGLPLNMN 80
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
GS P++ R+ + A DE ++ A ++ M +S++ R + D+
Sbjct: 81 GSSGPRAQATRTFVSNM---EAYTEIPFVFWDERLSTIAAERSLLEMNISRAKRANRIDS 137
Query: 184 YAAVILLE 191
AA +L+
Sbjct: 138 AAAAFILQ 145
>gi|383650335|ref|ZP_09960741.1| Holliday junction resolvase-like protein [Streptomyces chartreusis
NRRL 12338]
Length = 154
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 71/156 (45%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R + +L ++ + E E ++
Sbjct: 1 MRRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDIPAAQRRLKQLVEEYEPIEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR A LA + V L+DE T+ A + G+
Sbjct: 61 GLPRSLKGGEGPAAVKVRGFAQELARMISP--VPVRLVDERMTTVTASQGLRASGVKSKK 118
Query: 177 RQTKTDAYAAVILLERYFS-------MSGQGTEIVL 205
++ D AAVI+L++ G+G E V+
Sbjct: 119 GRSVIDQAAAVIILQQALESERVSGKAPGEGVEAVI 154
>gi|363888830|ref|ZP_09316208.1| hypothetical protein HMPREF9628_00118 [Eubacteriaceae bacterium
CM5]
gi|361967451|gb|EHL20273.1| hypothetical protein HMPREF9628_00118 [Eubacteriaceae bacterium
CM5]
Length = 142
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQL---LEIAQREETDEFIIGLPKSW 122
L +D+G + G+A++ + +R + LE Q+ + I ++GLPK+
Sbjct: 5 LALDVGKKKIGIAITDLLQITAQPHSTIRSKNLEEQIDKIIAIIDENSIKTVVVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+ SE Q++ ++ R++ A ++ + +DE TS A+ + +M + K + D
Sbjct: 65 NDSEGDQASWTKTFVERIS--AKKQDIEIVYIDERLTSKMALSSLKHMNMKKIKEKGLID 122
Query: 183 AYAAVILLERYFSMSGQG 200
AAV +LE Y G
Sbjct: 123 TVAAVNILETYLKRKENG 140
>gi|297537845|ref|YP_003673614.1| Holliday junction resolvase YqgF [Methylotenera versatilis 301]
gi|297257192|gb|ADI29037.1| Holliday junction resolvase YqgF [Methylotenera versatilis 301]
Length = 164
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 64/133 (48%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQ--RE-ETDEFIIGLPKSW 122
L D G R G+A+ + ++ + E E++ I++ +E + I+GLP S
Sbjct: 33 LCFDFGEQRIGVAVGEHLLASANPLVTIDNESNEVRFEAISKLVKEWQPKLLIVGLPLSL 92
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+ET + + A RL R V L+DE +S EA D + G+ A++ D
Sbjct: 93 DGAETSVTQLCKKFARRLNGRF---NLPVVLIDERYSSVEASDLLNQSGIKGRAQKEMLD 149
Query: 183 AYAAVILLERYFS 195
AA +L+ YFS
Sbjct: 150 QVAAQTILQSYFS 162
>gi|423348137|ref|ZP_17325822.1| RNAse H-fold protein YqgF [Parabacteroides merdae CL03T12C32]
gi|409215099|gb|EKN08106.1| RNAse H-fold protein YqgF [Parabacteroides merdae CL03T12C32]
Length = 146
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 40/139 (28%), Positives = 61/139 (43%), Gaps = 4/139 (2%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117
SL G + +D G RTGLA++ + + + +L L + RE + F++G
Sbjct: 3 SLCPMGRIIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTRFLADYVSREPVERFVVG 62
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
LPK + + V + L + Y DE TS A M++ GL K R
Sbjct: 63 LPKQMNNELSENMRYVEAFVTHLKRTIPDIPVEYY--DERFTSVLAHKAMLDGGLKKKKR 120
Query: 178 QTK--TDAYAAVILLERYF 194
Q K D +AVI+L+ Y
Sbjct: 121 QDKGLVDEISAVIILQSYL 139
>gi|340027802|ref|ZP_08663865.1| Holliday junction resolvase-like protein [Paracoccus sp. TRP]
Length = 155
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 47/84 (55%), Gaps = 3/84 (3%)
Query: 57 DSLWRGGFSLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQ-LLEIAQREETDE 113
++L R G +G+DLG G+A+S G PLTV++ L+ Q LL+I
Sbjct: 11 EALPRSGAIVGLDLGTKTIGVAVSDGLRGVASPLTVIRRTKFTLDAQALLKIVDERALVG 70
Query: 114 FIIGLPKSWDGSETPQSNKVRSVA 137
++GLP++ DGSE P++ R+ A
Sbjct: 71 LVLGLPRNMDGSEGPRAQSTRAFA 94
>gi|320528373|ref|ZP_08029535.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei
F0204]
gi|320131287|gb|EFW23855.1| conserved hypothetical protein TIGR00250 [Solobacterium moorei
F0204]
Length = 139
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 63/134 (47%), Gaps = 7/134 (5%)
Query: 66 LGVDLGLSRTGLALSK-GFCVRPLTVLKLRGEKLELQL---LEIAQREETDEFIIGLPKS 121
LG+DLG G++ S GF R + ++ + + + L L+I RE+ D ++GLP
Sbjct: 5 LGLDLGSVTCGVSFSDTGFIARTIETIRFKPDDYNMALDKVLDIVDREKPDVIVLGLPLL 64
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
+ P++ V E G V + DE T+A A ++ +S+ R+ K
Sbjct: 65 LNDDVGPRAQICLEFG---EVLEQESGIPVKMQDERFTTAVAESILLEADVSRKKRKKKI 121
Query: 182 DAYAAVILLERYFS 195
D AAV +L+ +
Sbjct: 122 DQLAAVQILQTWLD 135
>gi|336053633|ref|YP_004561920.1| Holliday junction resolvase [Lactobacillus kefiranofaciens ZW3]
gi|333957010|gb|AEG39818.1| possible Holliday junction resolvase [Lactobacillus kefiranofaciens
ZW3]
Length = 142
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 68/138 (49%), Gaps = 10/138 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G + L +K+ K L + ++ + D F++GLPK
Sbjct: 4 LGLDVGSKTVGVAVSDELGITAQKLETIKIDETKYNFGMRPLKNLVRKYDIDGFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI-NMGL-SKSARQ 178
+ DGS + ++ RL + G VY DE T+ E+ ++ + G+ + R+
Sbjct: 64 NMDGSSGGSVARSKAYGKRLEEKF---GLPVYYSDERLTTVESQRVLVEDAGIHDRKKRK 120
Query: 179 TKTDAYAAVILLERYFSM 196
D AAV++L+ Y +
Sbjct: 121 QVIDQMAAVLILQNYLDL 138
>gi|325294689|ref|YP_004281203.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum
DSM 11699]
gi|325065137|gb|ADY73144.1| Holliday junction resolvase [Desulfurobacterium thermolithotrophum
DSM 11699]
Length = 141
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 72/137 (52%), Gaps = 8/137 (5%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+ +D+G + G+A+S + P +++ + K +LLE+ ++ + + IIG+P S
Sbjct: 5 MALDVGFKKIGIAVSDPLLLTANPHSIIYRKSNKETFSKLLELIEKLDVGKIIIGIPISS 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYL--LDEHRTSAEAVDRMINMGLSKSARQTK 180
+G ET + K++ A +L ERG ++ + +DE +S EA + +G + +
Sbjct: 65 EGKETKMAEKIKKFALKLDSFLKERGKKIEIVFIDESYSSLEAKELCRFLG---KTEKEE 121
Query: 181 TDAYAAVILLERYFSMS 197
D AA ++L+ + +S
Sbjct: 122 IDDIAAALMLKEWLKVS 138
>gi|325290060|ref|YP_004266241.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271]
gi|324965461|gb|ADY56240.1| Holliday junction resolvase [Syntrophobotulus glycolicus DSM 8271]
Length = 134
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+G+DLG G+A+S +PL V+K R EK + +L I + E D ++G PK+ +
Sbjct: 4 MGLDLGEKTIGVAVSDLLMLTAQPLLVIK-RSEKEQEELAGIIKEYEVDTIVVGYPKNMN 62
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+ ++ + A L +AA R + L DE ++ A +I +S++ R+ D
Sbjct: 63 GTIGERALATEAFAQEL--QAAFR-LPIKLWDERLSTVAAQKSLIQADVSRAKRKKVIDK 119
Query: 184 YAAVILLERYF 194
AAV +L+ +
Sbjct: 120 MAAVFILQGFL 130
>gi|402758734|ref|ZP_10860990.1| Holliday junction resolvase-like protein [Acinetobacter sp. NCTC
7422]
Length = 147
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G +LL+I + + + FI+GLP +
Sbjct: 11 MAFDFGTQKMGMAMGQSSIESSNPLPLFPMKDGIPDWDKLLKIVKEWQPNLFIVGLPLNM 70
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + W ++DE T+ EA + + + A++ D
Sbjct: 71 DDSESELSARARKFARRLRHQTNIETW---MVDERLTTREAREELESYQSKGQAKRLSAD 127
Query: 183 AYAAVILLERYF 194
++AA +L++ ++
Sbjct: 128 SFAAALLIQSWY 139
>gi|379023079|ref|YP_005299740.1| Holliday junction resolvase-like protein [Rickettsia canadensis
str. CA410]
gi|376324017|gb|AFB21258.1| Holliday junction resolvase-like protein [Rickettsia canadensis
str. CA410]
Length = 154
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+ +D G + G+A+S G PL + + + + +L I ++ + +IGLP
Sbjct: 20 IAIDYGSKKLGIAMSNGEWSIAMPLNTITVVNKTAVINSVLSIIEKYKICGVVIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G T Q+N V A LA +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGVVTQQTNIVMKFAKELA---KYTNLPIYLQDERLTTKAANNFLKSFGVKRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|164685861|ref|ZP_01947456.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU
Goat Q177']
gi|212219592|ref|YP_002306379.1| Holliday junction resolvase-like protein [Coxiella burnetii
CbuK_Q154]
gi|226725506|sp|B6J6M4.1|RUVX_COXB1 RecName: Full=Putative Holliday junction resolvase
gi|164601378|gb|EAX31927.2| conserved hypothetical protein TIGR00250 [Coxiella burnetii 'MSU
Goat Q177']
gi|212013854|gb|ACJ21234.1| hypothetical cytosolic protein [Coxiella burnetii CbuK_Q154]
Length = 141
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 64 FSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPK 120
+LG D G+ R G+A+ + + +LK + L+ + ++ + + + ++G+P
Sbjct: 7 IALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVLDWEKIKMLIETWHANVLVVGIPY 66
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DGSE + R A +L R G + ++DE T+ EA + GL+K R
Sbjct: 67 NMDGSEQTLTFAARKFARKLQTRF---GLPLSMVDERLTTIEAKRQWYEQGLTK--RPQH 121
Query: 181 TDAYAAVILLERYF 194
D YAA ++LE++
Sbjct: 122 LDNYAAKLILEQWL 135
>gi|161831062|ref|YP_001597829.1| Holliday junction resolvase-like protein [Coxiella burnetii RSA
331]
gi|215919336|ref|NP_821064.2| Holliday junction resolvase-like protein [Coxiella burnetii RSA
493]
gi|218511772|sp|Q83A17.2|RUVX_COXBU RecName: Full=Putative Holliday junction resolvase
gi|226725541|sp|A9NBU2.1|RUVX_COXBR RecName: Full=Putative Holliday junction resolvase
gi|161762929|gb|ABX78571.1| conserved hypothetical protein TIGR00250 [Coxiella burnetii RSA
331]
gi|206584221|gb|AAO91578.2| hypothetical cytosolic protein [Coxiella burnetii RSA 493]
Length = 141
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 68/139 (48%), Gaps = 16/139 (11%)
Query: 64 FSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRG-----EKLELQLLEIAQREETDEFII 116
+LG D G+ R G+A+ + + +LK + EK+++ + + + ++
Sbjct: 7 IALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKM----LIETWHANVLVV 62
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
G+P + DGSE + R A +L +R G V ++DE T+ EA + GL+K
Sbjct: 63 GIPYNMDGSEQTLTFAARKFARKLQMRF---GLPVSMVDERLTTIEAKRQWYEQGLTK-- 117
Query: 177 RQTKTDAYAAVILLERYFS 195
R D YAA ++LE++
Sbjct: 118 RPQHLDNYAAKLILEQWLQ 136
>gi|366088421|ref|ZP_09454906.1| Holliday junction resolvase-like protein [Lactobacillus zeae KCTC
3804]
Length = 144
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + L ++++ +K + +L E+ ++ E F++GLPK
Sbjct: 4 MGLDVGSRTVGVAISDPLGWTAQGLEIIRINEDKQQFGIARLKELVKQYEVTAFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ + S P++ K ++ L G V +DE T+ EA +I + RQ +
Sbjct: 64 NMNNSIGPRAEKSQAYGDLL---KETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120
Query: 181 T-DAYAAVILLERYFSMSG 198
D AA ++L+ Y G
Sbjct: 121 VIDKVAAQMILQNYLDAKG 139
>gi|220929652|ref|YP_002506561.1| Holliday junction resolvase-like protein [Clostridium
cellulolyticum H10]
gi|254767508|sp|B8I4S7.1|RUVX_CLOCE RecName: Full=Putative Holliday junction resolvase
gi|219999980|gb|ACL76581.1| Holliday junction resolvase YqgF [Clostridium cellulolyticum H10]
Length = 142
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 67/133 (50%), Gaps = 7/133 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRG--EKLELQLLEIAQREETDEFIIGLPKS 121
LG+D G SR G+A+S G+ + L ++K + +K L+L EI + +IG P +
Sbjct: 4 LGIDYGDSRIGVAISDPMGWTAQGLEMIKSKDSLKKAVLRLSEIINEYSVTDIVIGYPIN 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
+G++ P++ + +++ + + DE T+ A M +G+ S ++
Sbjct: 64 MNGTKGPRTERTEEFIKKISDLGQ---FNIIKWDERLTTVSAHRTMNELGIKASKKKGIV 120
Query: 182 DAYAAVILLERYF 194
D +AV++L+ Y
Sbjct: 121 DTMSAVLILQGYL 133
>gi|443475608|ref|ZP_21065552.1| Holliday junction resolvase [Pseudanabaena biceps PCC 7429]
gi|443019550|gb|ELS33624.1| Holliday junction resolvase [Pseudanabaena biceps PCC 7429]
Length = 140
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 66/135 (48%), Gaps = 6/135 (4%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKS 121
+LG+D+G R G+A G V +T + R ++ +L + D ++GLP +
Sbjct: 5 ALGLDVGRKRIGVAGCDRLGITVHGITTITRRSWDEDMAILRSLILERAIDTLVVGLPYN 64
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DGS Q+ V+ A A + G V +DE TS EA + M + G+S +
Sbjct: 65 MDGSLGHQAKHVQKFAKGAA---KQLGISVEFVDERLTSYEAEEMMRSQGISTRHNKEMI 121
Query: 182 DAYAAVILLERYFSM 196
D AA ++L+++ ++
Sbjct: 122 DRKAAALILQQWLAL 136
>gi|456369821|gb|EMF48721.1| Putative Holliday junction resolvase [Streptococcus parauberis
KRS-02109]
gi|457094038|gb|EMG24593.1| Putative Holliday junction resolvase [Streptococcus parauberis
KRS-02083]
Length = 136
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++K+ +K E +L E+ + + D+F++GLPK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDKKEFGLARLEELVNQYKVDKFVVGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQT 179
+ + S P+ ++ + + V DE T+ +A +I +S+ R+
Sbjct: 61 NMNNSSGPRVEASQAYGNLI---QEQFNIPVEYQDERLTTVQAERMLIEQADISRGKRKK 117
Query: 180 KTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 118 VIDKLAAQLILQNYL 132
>gi|329117501|ref|ZP_08246218.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD
2020]
gi|333906038|ref|YP_004479909.1| Holliday junction resolvase [Streptococcus parauberis KCTC 11537]
gi|326907906|gb|EGE54820.1| RNAse H domain protein, YqgF family [Streptococcus parauberis NCFD
2020]
gi|333121303|gb|AEF26237.1| Holliday junction resolvase [Streptococcus parauberis KCTC 11537]
Length = 139
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++K+ +K E +L E+ + + D+F++GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIKIDEDKKEFGLARLEELVNQYKVDKFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQT 179
+ + S P+ ++ + + V DE T+ +A +I +S+ R+
Sbjct: 64 NMNNSSGPRVEASQAYGNLI---QEQFNIPVEYQDERLTTVQAERMLIEQADISRGKRKK 120
Query: 180 KTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 121 VIDKLAAQLILQNYL 135
>gi|311742343|ref|ZP_07716152.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM
15272]
gi|311313971|gb|EFQ83879.1| possible Holliday junction resolvase [Aeromicrobium marinum DSM
15272]
Length = 149
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/129 (29%), Positives = 62/129 (48%), Gaps = 6/129 (4%)
Query: 68 VDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
+D+G R G+A+ G P+ + G +LL+IA E E ++GLP S G
Sbjct: 1 MDVGDVRIGVAMCDPDGMIATPVETVPA-GPAAHARLLQIASEIEVVEIVVGLPLSLSGR 59
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAYA 185
E P + KVR+ + V AA V L+DE ++ A ++ + G + + D A
Sbjct: 60 EGPAAGKVRAF---VQVLAAMSDRPVRLVDERLSTVTAGSQLRDSGRTGRGTRRVIDQAA 116
Query: 186 AVILLERYF 194
AV++L+
Sbjct: 117 AVVILQNAL 125
>gi|290961839|ref|YP_003493021.1| Holliday junction resolvase subunit [Streptomyces scabiei 87.22]
gi|260651365|emb|CBG74487.1| putative holliday junction resolvase subunit [Streptomyces scabiei
87.22]
Length = 154
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 48/156 (30%), Positives = 72/156 (46%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R + +L ++ E I+
Sbjct: 1 MRRGRRLALDVGDARIGVASCDPDGILATPVETVPGRDVPAAQRRLRQLVDEYVPMEVIV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR A LA A V LLDE T+ A + G+
Sbjct: 61 GLPRSLKGGEGPAAVKVRGFAQELARMIAP--VPVRLLDERMTTVTAGQGLRASGVKSKK 118
Query: 177 RQTKTDAYAAVILLERYFS---MS----GQGTEIVL 205
++ D AAVI+L++ MS G+G E+V+
Sbjct: 119 GRSVIDQAAAVIILQQALESERMSGKAPGEGVEVVI 154
>gi|114566022|ref|YP_753176.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
gi|122318867|sp|Q0AZP9.1|RUVX_SYNWW RecName: Full=Putative Holliday junction resolvase
gi|114336957|gb|ABI67805.1| Holliday junction resolvase YqgF [Syntrophomonas wolfei subsp.
wolfei str. Goettingen]
Length = 141
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKSW 122
+G+DLG R G+A S G+ + ++L+ +G K +L L E+ Q + ++ ++GLP +
Sbjct: 4 MGLDLGEKRIGIAFSDPMGWTAQGHSILQRKGLKKDLSYLQELCQEFQVEKIVLGLPLNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+G+ P++ + + A RA + + V DE +S A ++ LS+ R+
Sbjct: 64 NGTMGPKALETQEFA-----RALQEALKIPVDFWDERLSSKSAERVLLEADLSRKRRKEL 118
Query: 181 TDAYAAVILLERYF 194
D AAV +L+ Y
Sbjct: 119 IDKIAAVHILQAYL 132
>gi|294102018|ref|YP_003553876.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM
12261]
gi|293616998|gb|ADE57152.1| Holliday junction resolvase YqgF [Aminobacterium colombiense DSM
12261]
Length = 138
Score = 48.9 bits (115), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 68/134 (50%), Gaps = 5/134 (3%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPK 120
G L +D+G R G+A+S G + + + + E L L+L E + +IG P
Sbjct: 2 GRILALDIGEKRIGMAVSDPLGCFAQGVGFIPMNKEWL-LKLDESLISLNVEMLLIGNPL 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+G+ P+++K++++A L +R + L DE T++ A ++ +S+ R+ K
Sbjct: 61 RTNGTAGPETDKIKNIAAELKIRYPHIS--IVLWDERFTTSIAQQVLLEGNVSRKKRKEK 118
Query: 181 TDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 119 VDQLAAALILQNYL 132
>gi|417860232|ref|ZP_12505288.1| hypothetical protein Agau_C201520 [Agrobacterium tumefaciens F2]
gi|338823296|gb|EGP57264.1| hypothetical protein Agau_C201520 [Agrobacterium tumefaciens F2]
Length = 159
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 10/130 (7%)
Query: 67 GVDLGLSRTGLA---LSKGFCVRPLTVLK-LRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G+DLG GLA LS+ F P VLK ++ + LL A++E+ FIIGLP +
Sbjct: 21 GLDLGTKTIGLAMSDLSRRFAT-PRPVLKRVKFTQDAEVLLAFAEKEKVAAFIIGLPMNM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKT 181
DGS P+ R+ + E+ ++ + R S A +R ++ M +S++ R +
Sbjct: 80 DGSAGPRVQATRAFVRTM----GEKTALPFIFWDERLSTVAAERALLEMDVSRAKRAERI 135
Query: 182 DAYAAVILLE 191
D+ AA +L+
Sbjct: 136 DSAAASFILQ 145
>gi|359772032|ref|ZP_09275470.1| putative Holliday junction resolvase [Gordonia effusa NBRC 100432]
gi|359310796|dbj|GAB18248.1| putative Holliday junction resolvase [Gordonia effusa NBRC 100432]
Length = 145
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 69/145 (47%), Gaps = 10/145 (6%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVL-----KLRGEKLELQLLEIAQREETD 112
W G LG+D+G R G+A+ G P+ + K RG L+ ++ E+ E
Sbjct: 3 WVRGRRLGIDVGTVRIGIAVCDPDGILATPVETVSRSRGKTRGSDLD-RIAELVDEYEAV 61
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGL 172
I+GLP++ G E+ ++ VR+ + R + + DE T+A A + + G+
Sbjct: 62 AVIVGLPRNLAGEESFAADAVRAFGTEIEARISPVPLEYF--DERMTTASASRALRSAGV 119
Query: 173 SKSARQTKTDAYAAVILLERYFSMS 197
S + ++ D AAV +L+ + +
Sbjct: 120 SAKSARSVIDQAAAVAILQGWLDFA 144
>gi|418473882|ref|ZP_13043425.1| Holliday junction resolvase-like protein [Streptomyces
coelicoflavus ZG0656]
gi|371545506|gb|EHN74123.1| Holliday junction resolvase-like protein [Streptomyces
coelicoflavus ZG0656]
Length = 154
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 69/156 (44%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R +L ++ E E ++
Sbjct: 1 MRRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDVPAAHRRLRQLVAEYEPIEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR LA A V L+DE T+ A + G+
Sbjct: 61 GLPRSLKGGEGPAAAKVRRFTQELAKGIAP--VPVRLVDERMTTVTASQGLRASGVKSKK 118
Query: 177 RQTKTDAYAAVILLERYFSM-------SGQGTEIVL 205
++ D AAVI+L++ G+G E+V+
Sbjct: 119 GRSVIDQAAAVIILQQALESERVSGRPPGEGVEVVI 154
>gi|359428384|ref|ZP_09219419.1| putative Holliday junction resolvase [Acinetobacter sp. NBRC
100985]
gi|358236169|dbj|GAB00958.1| putative Holliday junction resolvase [Acinetobacter sp. NBRC
100985]
Length = 147
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 66/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G QLL++ + + + F++GLP +
Sbjct: 11 MAFDFGTQKMGIAIGQASIESANPLPLFVMKDGIPDWNQLLKLVKEWQPNVFLVGLPLNM 70
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + W ++DE T+ EA + + AR+ D
Sbjct: 71 DDSESELSARARKFARRLRHQTNIETW---MVDERLTTREAREELEYYQNKGQARRLSAD 127
Query: 183 AYAAVILLERYF 194
++AA +L++ ++
Sbjct: 128 SFAAALLIQSWY 139
>gi|374308670|ref|YP_005055101.1| Holliday junction resolvase [Filifactor alocis ATCC 35896]
gi|291166998|gb|EFE29044.1| Holliday junction resolvase [Filifactor alocis ATCC 35896]
Length = 140
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 65/132 (49%), Gaps = 4/132 (3%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
L +D+G R G+A+S G+ +PL T+ + + E+ +++E+ ++ + + GLPK+
Sbjct: 7 LALDVGDRRIGMAMSDLLGWTPQPLYTIHRTKDEEDLGKIVEVIKQYDIGTIVCGLPKNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+ Q K +L + +V DE ++ A M G+ K ++ D
Sbjct: 67 DGTVGFQGEKTMQFVEQLQ-QLIPPEIKVVFQDERLSTKSAKQVMHTSGVKKKNKKNMID 125
Query: 183 AYAAVILLERYF 194
AAV +LE Y
Sbjct: 126 TIAAVFILETYL 137
>gi|15965062|ref|NP_385415.1| Holliday junction resolvase-like protein [Sinorhizobium meliloti
1021]
gi|384529020|ref|YP_005713108.1| Holliday junction resolvase [Sinorhizobium meliloti BL225C]
gi|433613082|ref|YP_007189880.1| RNAse H-fold protein YqgF [Sinorhizobium meliloti GR4]
gi|32130055|sp|Q92QL0.1|RUVX_RHIME RecName: Full=Putative Holliday junction resolvase
gi|15074241|emb|CAC45888.1| Conserved hypothetical protein [Sinorhizobium meliloti 1021]
gi|333811196|gb|AEG03865.1| Holliday junction resolvase [Sinorhizobium meliloti BL225C]
gi|429551272|gb|AGA06281.1| RNAse H-fold protein YqgF [Sinorhizobium meliloti GR4]
Length = 165
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 67 GVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
G+DLG G+++S + F + +++ LL A++E+ FIIGLP + D
Sbjct: 21 GLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALLSFAEKEKIAAFIIGLPVNMD 80
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKTD 182
GSE P+ R+ + E+ ++L + R S A +R +I M +S+ R + D
Sbjct: 81 GSEGPRCQATRAFVRNM----GEKTDIPFVLWDERLSTVAAERVLIEMDVSRKKRAERID 136
Query: 183 AYAAVILLE 191
+ AA +L+
Sbjct: 137 SAAASFILQ 145
>gi|409196263|ref|ZP_11224926.1| Holliday junction resolvase YqgF [Marinilabilia salmonicolor JCM
21150]
Length = 142
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 62/134 (46%), Gaps = 10/134 (7%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L D G + GLA++ + + + K+ L E +EE + F++G G
Sbjct: 5 LAFDYGKKKIGLAVTDPLQIIANGLDTIPSAKIYSFLEEYLAKEEVEAFVVGHATKDSGE 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWR---VYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
E+ ++R VR+ + + V+++DE TS A MI+ GLSK RQ K
Sbjct: 65 ESESMKQIRPF-----VRSLQNKYPHIPVHMVDERYTSKMAFQTMIDAGLSKKKRQNKML 119
Query: 181 TDAYAAVILLERYF 194
D +A I+L+ +
Sbjct: 120 VDKISATIILQTFM 133
>gi|406955592|gb|EKD84005.1| hypothetical protein ACD_39C00308G0001, partial [uncultured
bacterium]
Length = 139
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/131 (26%), Positives = 60/131 (45%), Gaps = 6/131 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
L +D+G R G+A+ P +V+K G+ +++ + ++EE D +IG+P S D
Sbjct: 4 LALDIGKKRIGVAICDRLEIAASPFSVVKA-GKTAVSEIVALLKKEEIDRVVIGMPVSLD 62
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G E + R L + + DE T+ A +I G+ + R+ DA
Sbjct: 63 GVEREPCERARYYKNEL---EKQTSLPIDFFDERLTTKIAEASLIESGMRREQRRGVIDA 119
Query: 184 YAAVILLERYF 194
AA ++L Y
Sbjct: 120 VAASLILRSYL 130
>gi|313888091|ref|ZP_07821765.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
ACS-146-V-Sch2b]
gi|312845781|gb|EFR33168.1| RNAse H domain protein, YqgF family [Peptoniphilus harei
ACS-146-V-Sch2b]
Length = 138
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S + +PL +K K+ + + EI + ++ ++GLPK+
Sbjct: 5 LGLDVGDVWIGVAISDALMLTAQPLMTIKRESNKIAYEKIHEIIKENNVEKVVVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+ + PQS KV A +L + + +DE T+ A +I + + R+ D
Sbjct: 65 NNTIGPQSEKVIKFAEKLKNKFK---VEIEYVDERMTTLMAEQVLIEGSVRRENRKKYID 121
Query: 183 AYAAVILLERYF 194
AA +L+ Y
Sbjct: 122 KIAATYILQSYL 133
>gi|365882702|ref|ZP_09421898.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS 375]
gi|365288936|emb|CCD94429.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS 375]
Length = 161
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 63 GFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLP 119
G +G+DLG G+A+S + T+ + + +LL I + F++GLP
Sbjct: 19 GALVGLDLGTKTIGVAVSDPDRKLATGVETIQRKAFKADAARLLSICSERKVVGFVLGLP 78
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DGSE P++ R+ A L A + L DE ++A +I M +S++ R
Sbjct: 79 INMDGSEGPRAQSTRAFARNL---AGLTDLPIGLWDERLSTAAVERELIGMDVSRAKRAE 135
Query: 180 KTDAYAAVILLE 191
D +AA+ +L+
Sbjct: 136 VIDTHAAIFILQ 147
>gi|157693142|ref|YP_001487604.1| Holliday junction resolvase-like protein [Bacillus pumilus
SAFR-032]
gi|194017226|ref|ZP_03055838.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
gi|389571962|ref|ZP_10162050.1| hypothetical protein BAME_06190 [Bacillus sp. M 2-6]
gi|167012693|sp|A8FFM7.1|RUVX_BACP2 RecName: Full=Putative Holliday junction resolvase
gi|157681900|gb|ABV63044.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Bacillus pumilus SAFR-032]
gi|194011094|gb|EDW20664.1| conserved hypothetical protein [Bacillus pumilus ATCC 7061]
gi|388428448|gb|EIL86245.1| hypothetical protein BAME_06190 [Bacillus sp. M 2-6]
Length = 138
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 69/136 (50%), Gaps = 12/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKL--RGEKLEL-QLLEIAQREETDEFIIGLPK 120
LG+DLG G+A+S G+ + + +K+ G L +L EI + TD+ ++G PK
Sbjct: 4 LGLDLGTKTLGVAISDEMGWTAQGIETIKIDEAGGDFGLSRLSEIVSQYGTDKIVLGFPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINMGLSKSARQ 178
+ +G+ P+ +S A + E + V L DE ++ A +I+ +S+ R+
Sbjct: 64 NMNGTVGPRGEASQSFA-----KVLENTYNVPVVLWDERLSTMAAEKMLISADVSRQKRK 118
Query: 179 TKTDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 119 KVIDKMAAVMILQGYL 134
>gi|219871133|ref|YP_002475508.1| Holliday junction resolvase-like protein [Haemophilus parasuis
SH0165]
gi|254767517|sp|B8F5F8.1|RUVX_HAEPS RecName: Full=Putative Holliday junction resolvase
gi|219691337|gb|ACL32560.1| holliday junction resolvase-like protein/crossover junction
endodeoxyribonuclease [Haemophilus parasuis SH0165]
Length = 138
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 50/94 (53%), Gaps = 3/94 (3%)
Query: 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160
Q+ ++ + + D ++GLP + DG+E P + + + A RL R V L DE T+
Sbjct: 44 QIGKVIAQWQPDLLVVGLPLNMDGTEQPLTQRAKKFANRLNGRF---NLPVELQDERLTT 100
Query: 161 AEAVDRMINMGLSKSARQTKTDAYAAVILLERYF 194
EA + G K+ ++ K DA +A ++LE +F
Sbjct: 101 VEAKSEIFARGGFKALKKGKVDAISACLILESWF 134
>gi|408786017|ref|ZP_11197757.1| Holliday junction resolvase-like protein [Rhizobium lupini HPC(L)]
gi|408488206|gb|EKJ96520.1| Holliday junction resolvase-like protein [Rhizobium lupini HPC(L)]
Length = 159
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 10/130 (7%)
Query: 67 GVDLGLSRTGLA---LSKGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
G+DLG GLA LS+ F P V+K L+ + LL A++E+ FIIGLP +
Sbjct: 21 GLDLGTKTIGLAMSDLSRRFAT-PRPVIKRVKFTLDAEVLLAFAEKEKVAAFIIGLPMNM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKT 181
DGS P+ R+ + E+ ++ + R S A +R ++ M +S++ R +
Sbjct: 80 DGSAGPRVQATRAFVRTM----GEKTALPFVYWDERLSTVAAERALLEMDVSRAKRAERI 135
Query: 182 DAYAAVILLE 191
D+ AA +L+
Sbjct: 136 DSAAASFILQ 145
>gi|332186801|ref|ZP_08388543.1| uncharacterized family protein [Sphingomonas sp. S17]
gi|332013134|gb|EGI55197.1| uncharacterized family protein [Sphingomonas sp. S17]
Length = 154
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 69/140 (49%), Gaps = 10/140 (7%)
Query: 56 KDSLWRGGFSLGVDLGLSRTGLALSKG---FCVRPLTVLKLRGEKLELQLLEIAQREETD 112
+D+L GG +G+D+G G AL F V + + K + L+ + ++
Sbjct: 12 RDALPSGGRLIGLDVGTKTIGTALCDAGWSFASPATLVRRTKFTKDKEALIAMIAQQGVK 71
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMG 171
+IGLP + DGSE+P+S R+ A A+ G LL + R S AV+R MI
Sbjct: 72 GLVIGLPLNLDGSESPRSQSTRA----FARNCADLG--PILLWDERWSTVAVERTMIEQD 125
Query: 172 LSKSARQTKTDAYAAVILLE 191
+S++ R + D AA +L+
Sbjct: 126 MSRAKRAERIDNLAAAHILQ 145
>gi|124007537|ref|ZP_01692242.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
gi|123987020|gb|EAY26776.1| conserved hypothetical protein [Microscilla marina ATCC 23134]
Length = 138
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDE-FIIGLPKSWDG 124
+ +D G R GLA++ + T L K +Q L+ +E E F++G+PK DG
Sbjct: 5 VAIDYGTKRVGLAVTDPLKIIA-TALDTVHSKDVIQFLKDYHEQEGIELFVVGMPKRLDG 63
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TD 182
+E+ + V + L + + DE TS A++ MI G +K R+ K D
Sbjct: 64 TESHATKHVEAFLNLLKKNFPDTDIETH--DERFTSKIALNAMIAGGTTKKYRREKGNID 121
Query: 183 AYAAVILLERYF 194
+AV++L+ Y
Sbjct: 122 KVSAVVILQSYL 133
>gi|402703765|ref|ZP_10851744.1| Holliday junction resolvase-like protein [Rickettsia helvetica
C9P9]
Length = 154
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 61/129 (47%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + +IGLP
Sbjct: 20 IAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLLNIIEKYKVCGVVIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A L +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNIVMKFAEELT---KSINLPIYLQDERLTTKAANNFLKSFGVKRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|117928536|ref|YP_873087.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B]
gi|117648999|gb|ABK53101.1| Holliday junction resolvase YqgF [Acidothermus cellulolyticus 11B]
Length = 173
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 64/139 (46%), Gaps = 6/139 (4%)
Query: 57 DSLWRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLK--LRGEKLELQLLEIAQREETD 112
D+ R G +GVD+G R G+A+S G P L G +L ++ +
Sbjct: 3 DTAVRPGVRIGVDVGTVRIGVAVSDPDGRLAVPAETLPRDASGAGELRRLAQLVEERGAV 62
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGL 172
E ++GLP S G+ + + A RLA A V L+DE T+ A R+ + GL
Sbjct: 63 EVVVGLPVSLRGTAGAAARDIAGYARRLAT--AVHPVPVRLVDERFTTVHADRRLQSAGL 120
Query: 173 SKSARQTKTDAYAAVILLE 191
+ R+ D AA ILL+
Sbjct: 121 AGRQRRAVVDQLAAAILLQ 139
>gi|15888641|ref|NP_354322.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
gi|32130043|sp|Q8UFT1.1|RUVX_AGRT5 RecName: Full=Putative Holliday junction resolvase
gi|15156369|gb|AAK87107.1| conserved hypothetical protein [Agrobacterium fabrum str. C58]
Length = 159
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 66/129 (51%), Gaps = 8/129 (6%)
Query: 67 GVDLGLSRTGLA---LSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
G+DLG GLA LS+ F + +++ + LL A++E+ F+IGLP + D
Sbjct: 21 GLDLGTKTIGLAMSDLSRRFATPRPVIKRVKFTQDAQVLLAFAEKEKVAAFVIGLPINMD 80
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKTD 182
GS P++ R+ + E+ ++ + R S A +R ++ M +S++ R + D
Sbjct: 81 GSAGPRAQATRAFVRTM----GEKTALPFIYWDERLSTVAAERALLEMDVSRAKRAERID 136
Query: 183 AYAAVILLE 191
+ AA +L+
Sbjct: 137 SAAASFILQ 145
>gi|409436946|ref|ZP_11264105.1| putative Holliday junction resolvase [Rhizobium mesoamericanum
STM3625]
gi|408751420|emb|CCM75259.1| putative Holliday junction resolvase [Rhizobium mesoamericanum
STM3625]
Length = 164
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/134 (31%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query: 67 GVDLGLSRTGLALS---KGFCV-RPLTVLKLRGEKLELQ---LLEIAQREETDEFIIGLP 119
G+DLG GL++S + F RP+ +R EK + LLE A RE+ F+IGLP
Sbjct: 21 GLDLGTKTIGLSMSDLGRRFSTPRPV----IRREKFAIDAVTLLEFAAREKVAAFVIGLP 76
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL--DEHRTSAEAVDRMINMGLSKSAR 177
+ DGS P+ R+ VR E+ + + DE ++ A ++ M +S+ R
Sbjct: 77 MNMDGSAGPRVQATRAF-----VRNMEQKTDLPFVYWDERLSTVAAERALLEMDVSRRQR 131
Query: 178 QTKTDAYAAVILLE 191
+ D+ AA +L+
Sbjct: 132 AERIDSAAASFILQ 145
>gi|423712623|ref|ZP_17686923.1| RNAse H-fold protein YqgF [Bartonella washoensis Sb944nv]
gi|395411416|gb|EJF77938.1| RNAse H-fold protein YqgF [Bartonella washoensis Sb944nv]
Length = 159
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 67 GVDLGLSRTGLALS-KG-FCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSWD 123
G+DLG G+A+S +G F P +VL+ + L+ + L++I RE IIGLP + +
Sbjct: 21 GLDLGTKTIGIAVSDRGLFLSNPRSVLQRKKFMLDARTLIQIFDRENVGVVIIGLPLNMN 80
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
GS P++ R+ + A DE ++ A ++ M +S++ R + D+
Sbjct: 81 GSSGPRAQATRTFVSNM---EAYTEIPFVFWDERLSTIAAERSLLEMNISRAKRANRIDS 137
Query: 184 YAAVILLE 191
AA +L+
Sbjct: 138 AAAAFILQ 145
>gi|386581110|ref|YP_006077514.1| Holliday junction resolvase-like protein [Streptococcus suis SS12]
gi|353733256|gb|AER14266.1| Holliday junction resolvase-like protein [Streptococcus suis SS12]
Length = 136
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 68/136 (50%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + EK E L E+ ++ + D+F++GLPK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLEHLTELVEQYKVDKFVVGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ L R V DE T+ A +RM+ +S+ R+
Sbjct: 61 NMNNTSGPRVEASQAYGDLLTERYK---LPVDYQDERLTTV-AAERMLIEQADISRGKRK 116
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 117 KVIDKLAAQLILQNYL 132
>gi|402494408|ref|ZP_10841150.1| Holliday junction resolvase YqgF [Aquimarina agarilytica ZC1]
Length = 136
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
+ +D G RTG+A++ + + + +L L E AQ + + F++G PK G
Sbjct: 5 IAIDYGSKRTGIAVTDDLQLIASGLTTVSTTELIPFLKEYAQLNKIEAFVVGEPKRLHGE 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT--DA 183
+ ++++ +LA G +++ +DE TS A D M+ G+SK R+ K+ D
Sbjct: 65 ASDIEVEIKTFLEQLAKEFI--GVQIHRIDERFTSKMAFDTMLKSGISKKKRRDKSLVDK 122
Query: 184 YAAVILLERYFS 195
+A ++L+ + +
Sbjct: 123 ISATLILQDFLN 134
>gi|365157965|ref|ZP_09354208.1| putative Holliday junction resolvase [Bacillus smithii 7_3_47FAA]
gi|363622144|gb|EHL73315.1| putative Holliday junction resolvase [Bacillus smithii 7_3_47FAA]
Length = 138
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLP 119
++G+D+G G+A+S G+ + + +K+ EK +L +L E+ + + D+ ++GLP
Sbjct: 3 TMGLDVGSKTVGVAISDELGWTAQGIETIKVDEEKGDLGFDRLKELIEDYQVDKIVVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ + + P+ ++ A +L E V L DE ++ A ++ +S+ R+
Sbjct: 63 KNMNNTIGPRGEASQAYAKKL---EKEFSLPVVLWDERLSTMAAERVLLEADVSRKKRKK 119
Query: 180 KTDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 120 VIDKMAAVMILQGYL 134
>gi|386345689|ref|YP_006041853.1| putative Holliday junction resolvase [Streptococcus thermophilus
JIM 8232]
gi|339279150|emb|CCC20898.1| putative Holliday junction resolvase [Streptococcus thermophilus
JIM 8232]
Length = 136
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + + ++K+ E E +L E+ + + D+F++GLPK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGVEIIKINEEAKEFGFDRLGELVKEYQVDKFVVGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + +E P+ ++ ++ V DE T+ +A +RM+ +S+ R+
Sbjct: 61 NMNNTEGPRVEASKAYGDKI---KEIFNLPVDYQDERLTTVQA-ERMLVEQADVSRDKRK 116
Query: 179 TKTDAYAAVILLERYFS 195
D AA ++L+ Y
Sbjct: 117 KVIDKLAAQLILQNYLD 133
>gi|406946852|gb|EKD77923.1| hypothetical protein ACD_42C00117G0002 [uncultured bacterium]
Length = 142
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 7/132 (5%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKL-RGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D G + G+A+ + PLT+LK RG ++ ++ D I+GLP +
Sbjct: 13 LGFDFGFKKIGVAIGQTITRSANPLTILKANRGTPDWSEIKKLITEWGVDALIVGLPLNM 72
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P + + R+ +L + VY +DE T+ A + M + L + R D
Sbjct: 73 DGTEQPITKQARAFGEQL---KKQFQLPVYFVDERLTTVAAKNEM-HSTLKGADRFEHAD 128
Query: 183 AYAAVILLERYF 194
+ +A +++E +
Sbjct: 129 SVSAKLIVESWM 140
>gi|374263536|ref|ZP_09622084.1| YqgF [Legionella drancourtii LLAP12]
gi|363536126|gb|EHL29572.1| YqgF [Legionella drancourtii LLAP12]
Length = 138
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVR--PLTVLKLRGEKLELQLL-EIAQREETDEFIIGLP 119
G LG D G R G+A+ + PL + + + ++ ++ + I+G+P
Sbjct: 4 GVYLGFDFGYKRIGVAVGQRLTCSASPLATISAQTGVPDWTVVAKVVAQWTPQALIVGIP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
DG E ++ R A L R V+L+DE T+ EA + G + +QT
Sbjct: 64 TCIDGREQYTTSAARRFAKELRKRFTLP---VHLVDERLTTVEARGHLFAQGGYRKIKQT 120
Query: 180 KTDAYAAVILLERYF 194
+ D+ AA ++LE++
Sbjct: 121 EVDSIAACVILEQWL 135
>gi|218259649|ref|ZP_03475312.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii
DSM 18315]
gi|218224965|gb|EEC97615.1| hypothetical protein PRABACTJOHN_00971 [Parabacteroides johnsonii
DSM 18315]
Length = 140
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G + +D G RTGLA++ + + + +L L + RE + F++GLPK
Sbjct: 2 GRIIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTKFLADYVSREPVERFVVGLPKQM 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
+ + V + L + Y DE TS A M++ GL K RQ K
Sbjct: 62 NNELSENMKYVEAFVAHLKRTIPDIPVEYY--DERFTSVLAHKAMLDGGLKKKKRQDKGL 119
Query: 181 TDAYAAVILLERYF 194
D +AVI+L+ Y
Sbjct: 120 VDEISAVIILQSYL 133
>gi|218132863|ref|ZP_03461667.1| hypothetical protein BACPEC_00724 [[Bacteroides] pectinophilus ATCC
43243]
gi|217991736|gb|EEC57740.1| RNAse H domain protein, YqgF family [[Bacteroides] pectinophilus
ATCC 43243]
Length = 139
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 68/135 (50%), Gaps = 9/135 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPL-TVLKLRGEKLELQLL---EIAQREETDEFIIGLP 119
LG+D G G+A++ G V+PL T+ + K+ L EI + + ++ ++GLP
Sbjct: 4 LGLDYGTKTVGVAVTDPLGMTVQPLETITRDSDSKIRPTLRRIEEIIKELDVEQIVLGLP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E ++ R L R G +V + DE T+ EA + + +++ +
Sbjct: 64 LNMDGTEGERAACSREFGDMLERRT---GLQVVMTDERLTTVEAEEILETCKVARKDYKK 120
Query: 180 KTDAYAAVILLERYF 194
D+ AAV++LE Y
Sbjct: 121 YVDSVAAVLILEDYV 135
>gi|406984318|gb|EKE05377.1| hypothetical protein ACD_19C00328G0005 [uncultured bacterium]
Length = 126
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 16/134 (11%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D G R GLA+ + V P + + +++Q L ++ +E D+ ++GLP
Sbjct: 4 LGIDFGTRRMGLAVKRSGVDVVLPFGIFEWENTDVKMQELADLISKENFDKIVMGLPVGL 63
Query: 123 -DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
G ET S +VR A +L ++ G + DE +S EA D M Q
Sbjct: 64 KSGEETSNSERVRKFADKLKLKT---GLPIEFADERFSSHEA-DSM--------GGQAYR 111
Query: 182 DAYAAVILLERYFS 195
D AA+++L+ Y +
Sbjct: 112 DEKAAMVILQEYLA 125
>gi|154707335|ref|YP_001425496.1| Holliday junction resolvase-like protein [Coxiella burnetii Dugway
5J108-111]
gi|212213538|ref|YP_002304474.1| Holliday junction resolvase-like protein [Coxiella burnetii
CbuG_Q212]
gi|226725507|sp|B6J3V7.1|RUVX_COXB2 RecName: Full=Putative Holliday junction resolvase
gi|226725508|sp|A9KDE8.1|RUVX_COXBN RecName: Full=Putative Holliday junction resolvase
gi|154356621|gb|ABS78083.1| hypothetical cytosolic protein [Coxiella burnetii Dugway 5J108-111]
gi|212011948|gb|ACJ19329.1| hypothetical cytosolic protein [Coxiella burnetii CbuG_Q212]
Length = 141
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 67/138 (48%), Gaps = 16/138 (11%)
Query: 64 FSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRG-----EKLELQLLEIAQREETDEFII 116
+LG D G+ R G+A+ + + +LK + EK+++ + + + ++
Sbjct: 7 IALGFDFGMKRIGVAVGQTVTHSANAIAILKAQDGVPDWEKIKM----LIETWHANVLVV 62
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
G+P + DGSE + R A +L R G V ++DE T+ EA + GL+K
Sbjct: 63 GIPYNMDGSEQTLTFAARKFARKLQTRF---GLPVSMVDERLTTIEAKRQWYEQGLTK-- 117
Query: 177 RQTKTDAYAAVILLERYF 194
R D YAA ++LE++
Sbjct: 118 RPQHLDNYAAKLILEQWL 135
>gi|317487355|ref|ZP_07946146.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6]
gi|345890167|ref|ZP_08841118.1| Holliday junction resolvase [Bilophila sp. 4_1_30]
gi|316921378|gb|EFV42673.1| Holliday junction resolvase YqgF [Bilophila wadsworthia 3_1_6]
gi|345038801|gb|EGW43184.1| Holliday junction resolvase [Bilophila sp. 4_1_30]
Length = 142
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRP--LTVLKLRGEKLELQLLEIAQREETDEFIIGLPKS 121
L +D G RTG+A+S G P +++ R E +LL + + E TD +IGLP +
Sbjct: 4 LAIDYGQKRTGIAVSDTGGSMAFPRKTILMRTRAAFFE-ELLALIEAEATDAIVIGLPIN 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG E+ + +VR+ + LA R ++ ++E +S EA + + G S + +
Sbjct: 63 LDGEESLTTRQVRNFSKSLARRTT---LPLFWMEEALSSYEAERDLRDAGRSAAQGRAVL 119
Query: 182 DAYAAVILLERYF 194
D AAV +L+ +
Sbjct: 120 DQQAAVRILQSFL 132
>gi|376261929|ref|YP_005148649.1| RNAse H-fold protein YqgF [Clostridium sp. BNL1100]
gi|373945923|gb|AEY66844.1| RNAse H-fold protein YqgF [Clostridium sp. BNL1100]
Length = 142
Score = 48.9 bits (115), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 34/133 (25%), Positives = 68/133 (51%), Gaps = 7/133 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRG--EKLELQLLEIAQREETDEFIIGLPKS 121
LG+D G SR G+A+S G+ + L ++K + +K L+L EI + + +IG P +
Sbjct: 4 LGIDYGDSRIGVAISDPMGWTAQGLEMIKSKDGLKKAILRLSEIIKEYGVTDIVIGYPIN 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
+G++ P++ + +++ + + DE T+ A M +G+ S ++
Sbjct: 64 MNGTKGPRTERTEEFIKKISDLGQ---FNIIKWDERLTTVSAHRTMNELGIKASKKKDIV 120
Query: 182 DAYAAVILLERYF 194
D +AV++L+ Y
Sbjct: 121 DTMSAVLILQGYL 133
>gi|52424316|ref|YP_087453.1| Holliday junction resolvase-like protein [Mannheimia
succiniciproducens MBEL55E]
gi|62900960|sp|Q65VZ2.1|RUVX_MANSM RecName: Full=Putative Holliday junction resolvase
gi|52306368|gb|AAU36868.1| unknown [Mannheimia succiniciproducens MBEL55E]
Length = 140
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+G +G S TG A + L K + +E +E + D ++GLP
Sbjct: 13 GTKSIGCAVGQSITGTA-------QALPAFKAQNGIPNWDSIEKCLKEWKPDILVVGLPL 65
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E +++ R A RL R G +V L DE T+ EA + G K+ ++K
Sbjct: 66 NMDGTEQEFTSRARKFANRLHGRF---GVKVELQDERLTTTEARTEIFQRGGYKALNKSK 122
Query: 181 TDAYAAVILLERYF 194
D +A ++LE +F
Sbjct: 123 VDGISAALILESWF 136
>gi|256420947|ref|YP_003121600.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588]
gi|256035855|gb|ACU59399.1| Holliday junction resolvase YqgF [Chitinophaga pinensis DSM 2588]
Length = 136
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 61/134 (45%), Gaps = 10/134 (7%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTGLA++ + + + L L + +E + F+IG PK+ DG
Sbjct: 5 LAIDYGKKRTGLAVTDPLQLIASGLTTVATHDLIPYLKKYLAQEAVELFLIGEPKNLDGG 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGW---RVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
T + V +R E+ + V +DE TS A MI+ GL K RQ K
Sbjct: 65 ATHATPLVVE-----CIRILEKNFPQVPVKKVDERFTSKMAFQTMIDSGLKKKDRQNKGL 119
Query: 181 TDAYAAVILLERYF 194
D +A I+L+ Y
Sbjct: 120 VDEISATIILQEYL 133
>gi|116628625|ref|YP_821244.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus LMD-9]
gi|386087565|ref|YP_006003439.1| Holliday junction resolvase YqgF [Streptococcus thermophilus ND03]
gi|387910661|ref|YP_006340967.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus MN-ZLW-002]
gi|122266781|sp|Q03IC4.1|RUVX_STRTD RecName: Full=Putative Holliday junction resolvase
gi|116101902|gb|ABJ67048.1| RNase H-like ribonuclease [Streptococcus thermophilus LMD-9]
gi|312279278|gb|ADQ63935.1| Holliday junction resolvase YqgF [Streptococcus thermophilus ND03]
gi|387575596|gb|AFJ84302.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus MN-ZLW-002]
Length = 139
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + + ++K+ E E +L E+ + + D+F++GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGVEIIKINEEAKEFGFDRLGELVKEYQVDKFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + +E P+ ++ ++ V DE T+ +A +RM+ +S+ R+
Sbjct: 64 NMNNTEGPRVEASKAYGDKI---KEIFNLPVDYQDERLTTVQA-ERMLVEQADVSRDKRK 119
Query: 179 TKTDAYAAVILLERYFS 195
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|56461319|ref|YP_156600.1| Holliday junction resolvase-like protein [Idiomarina loihiensis
L2TR]
gi|62900918|sp|Q5QVM3.1|RUVX_IDILO RecName: Full=Putative Holliday junction resolvase
gi|56180329|gb|AAV83051.1| Predicted endonuclease [Idiomarina loihiensis L2TR]
Length = 144
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
+G D G G+A+ + PL + + + QL+E E + ++ ++GLP +
Sbjct: 5 IGFDFGTKSIGVAVGQTITATASPLAAITAKEGIPDWQLIEKLFAEWQPEQLVVGLPLNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P + K + RL R G V DE TS A + + G + ++ D
Sbjct: 65 DGTEQPLTQKAKKFGNRLHGR---FGLPVAFQDERLTSTSARESLFAEGGFRKLKKGAVD 121
Query: 183 AYAAVILLERYFS 195
+ AA+I++E + +
Sbjct: 122 SQAALIIVEDFMN 134
>gi|397906495|ref|ZP_10507295.1| Putative Holliday junction resolvase [Caloramator australicus RC3]
gi|397160452|emb|CCJ34632.1| Putative Holliday junction resolvase [Caloramator australicus RC3]
Length = 137
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G R G+ALS G+ + L L+ + K +++ +++I + ++ ++GLPK+
Sbjct: 4 LGLDIGEKRIGIALSDPLGWIAQSLKTLERKSIKNDVEEIIKIINDYQVEKVVVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ KV + +L + + DE T+ A +I+ LS+ R+ D
Sbjct: 64 NGTLGESGQKVMNFCEKLLEKI---NIELIYEDERLTTMAAEKVLIDADLSRKKRKGVID 120
Query: 183 AYAAVILLERYF 194
+ AA +L+ Y
Sbjct: 121 SLAATFILQTYL 132
>gi|345017552|ref|YP_004819905.1| Holliday junction resolvase [Thermoanaerobacter wiegelii Rt8.B1]
gi|344032895|gb|AEM78621.1| Holliday junction resolvase [Thermoanaerobacter wiegelii Rt8.B1]
Length = 139
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/138 (29%), Positives = 65/138 (47%), Gaps = 17/138 (12%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+G+D+G G+A+S G + LT +K K + + + +I E I+GLPK+
Sbjct: 4 MGLDVGDKTIGVAISDLSGTIAQGLTTIKRSSNKKDFERIKQIINEYEVGMIIVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAER-----GWRVYLLDEHRTSAEAVDRMINMG-LSKSA 176
G+ PQ KV VR E + L DE T+ EA +I +S++
Sbjct: 64 SGTLGPQGQKV--------VRFVEHLKEAFSIPIILWDERLTTVEAQRVLIEKADISRAK 115
Query: 177 RQTKTDAYAAVILLERYF 194
R+ D AAV++L+ Y
Sbjct: 116 RKEVIDKLAAVLILQNYL 133
>gi|304413317|ref|ZP_07394790.1| Holliday junction resolvase-like protein [Candidatus Regiella
insecticola LSR1]
gi|304284160|gb|EFL92553.1| Holliday junction resolvase-like protein [Candidatus Regiella
insecticola LSR1]
Length = 140
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/139 (28%), Positives = 68/139 (48%), Gaps = 11/139 (7%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPK 120
G S+GV +G + TG A + L+ LK R G LQ+ ++ + + ++GLP
Sbjct: 12 GTKSIGVAIGQTITGTATA-------LSALKARDGIPDWLQVEKLLGEWQPELVVVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P +++ R A RL R ++ L DE ++ A + N G ++ +
Sbjct: 65 NMDGTEQPLTSRARKFANRLHSRFNV---KIALHDERLSTVAARAHLFNHGGYRALDKGN 121
Query: 181 TDAYAAVILLERYFSMSGQ 199
DA +A ++L +F Q
Sbjct: 122 VDAASAAVILCSWFEQHAQ 140
>gi|189461817|ref|ZP_03010602.1| hypothetical protein BACCOP_02483 [Bacteroides coprocola DSM 17136]
gi|189431411|gb|EDV00396.1| RNAse H domain protein, YqgF family [Bacteroides coprocola DSM
17136]
Length = 138
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A+S + + + +L LL ++E+ + IIG PK +
Sbjct: 5 LAIDYGRKRTGIAVSDPLQIIASGLTTVPTHQLMDFLLNYIKQEQVECIIIGHPKQLNNE 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
++ + RL + V L+DE TS A M+ GL K RQ K D
Sbjct: 65 DSENMKNIIPFINRL--KKILPDMPVQLVDERFTSVLAHQTMLAGGLKKKDRQNKALVDE 122
Query: 184 YAAVILLERYF 194
+A I+L+ Y
Sbjct: 123 ISATIILQSYL 133
>gi|49475587|ref|YP_033628.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1]
gi|62900975|sp|Q6G3F1.1|RUVX_BARHE RecName: Full=Putative Holliday junction resolvase
gi|49238394|emb|CAF27621.1| hypothetical protein BH08220 [Bartonella henselae str. Houston-1]
Length = 159
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 71/138 (51%), Gaps = 10/138 (7%)
Query: 59 LWRGGFSLGVDLGLSRTGLALS-KGFCV-RPLTVLKLRGEKLELQ-LLEIAQREETDEFI 115
L G G+DLG G+A+S +G P +VL+ + ++ Q L++I E I
Sbjct: 13 LLPGQIIAGLDLGTKTIGIAVSDRGLIFSNPRSVLQRQKFTVDAQTLIKIFDHENVGVII 72
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRV-YLLDEHRTSAEAVDR-MINMGLS 173
IGLP + +GS P R+ A R VR E + ++ + R S A +R ++ M +S
Sbjct: 73 IGLPLNMNGSSGP-----RAQATRTFVRNMEAYTEIPFVFWDERLSTIAAERSLLEMDVS 127
Query: 174 KSARQTKTDAYAAVILLE 191
++ R T+ D+ AA +L+
Sbjct: 128 RAKRATRIDSAAAAFILQ 145
>gi|384536698|ref|YP_005720783.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti SM11]
gi|336033589|gb|AEH79521.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti SM11]
Length = 218
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 67 GVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
G+DLG G+++S + F + +++ LL A++E+ FIIGLP + D
Sbjct: 74 GLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALLSFAEKEKIAAFIIGLPVNMD 133
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKTD 182
GSE P+ R+ + E+ ++L + R S A +R +I M +S+ R + D
Sbjct: 134 GSEGPRCQATRAFVRTM----GEKTDIPFVLWDERLSTVAAERVLIEMDVSRKKRAERID 189
Query: 183 AYAAVILLE 191
+ AA +L+
Sbjct: 190 SAAASFILQ 198
>gi|332878326|ref|ZP_08446052.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|332683777|gb|EGJ56648.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
Length = 136
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 66/136 (48%), Gaps = 6/136 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDE-FIIGLPKSWDG 124
L +D G RTGLA++ + + + +L L LE EE E F+IGLPK +
Sbjct: 4 LSIDYGTKRTGLAVTDPLKLIASGLTTVDTPQL-LPFLEKYTAEEAVEAFVIGLPKRLNN 62
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT--D 182
++ ++ + +L R +++ DE TS A MI+ GL K RQ K D
Sbjct: 63 EDSAVEADIQQLLTKLKERFP--TIKIHRYDERFTSKIAFQTMIDSGLKKKQRQNKALID 120
Query: 183 AYAAVILLERYFSMSG 198
+A ++L+ + +++
Sbjct: 121 EISATLILQDFLNLAN 136
>gi|387771427|ref|ZP_10127588.1| RNAse H domain protein, YqgF family [Haemophilus parahaemolyticus
HK385]
gi|386908786|gb|EIJ73472.1| RNAse H domain protein, YqgF family [Haemophilus parahaemolyticus
HK385]
Length = 137
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPK 120
G +S+G +G S TG A + L K + ++ ++ Q + D ++GLP
Sbjct: 11 GTYSIGCAVGQSITGTA-------QGLPSFKAQDGIPNWDMIGKVIQEWKPDLLVVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ +G+E P + + + A RL R V L DE T+ EA + G K+ ++ K
Sbjct: 64 NMNGTEQPLTQRAKKFANRLNGRF---NLPVELQDERLTTVEAKSEIFARGGYKALKKDK 120
Query: 181 TDAYAAVILLERYF 194
D+ +A ++LE +F
Sbjct: 121 VDSISACLILESWF 134
>gi|226311491|ref|YP_002771385.1| Holliday junction resolvase [Brevibacillus brevis NBRC 100599]
gi|226094439|dbj|BAH42881.1| putative Holliday junction resolvase [Brevibacillus brevis NBRC
100599]
Length = 138
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 70/132 (53%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSW 122
+G+D+G G+A+S G+ + + +K + EK +L E+ + + F++GLPK+
Sbjct: 5 MGLDVGDKTIGVAVSDELGWTAQGVETIKRQSKEKDFARLSELVSQYQIGAFVVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P++ ++ L R + V++ DE T+ A +I+ +S+ R+T D
Sbjct: 65 NGTIGPRAEMCQAFGKLLEERTS---LPVHMWDERLTTMAAERMLISADVSRQKRKTVID 121
Query: 183 AYAAVILLERYF 194
AA ++L+ Y
Sbjct: 122 KMAATLILQGYL 133
>gi|196233674|ref|ZP_03132515.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428]
gi|196222344|gb|EDY16873.1| Holliday junction resolvase YqgF [Chthoniobacter flavus Ellin428]
Length = 140
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 66/133 (49%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKS 121
+LG+D G +R G+A+S G PL + ++ + ++ + ++ I+GLP++
Sbjct: 4 ALGIDHGDARIGVAVSDDLGMLAHPLETIHVKEVADPVARIATLVTSKDVGHIILGLPRN 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DGS P + KVR+ A +L RAA G V L DE TS A + G +
Sbjct: 64 MDGSYGPAAEKVRAFAEKL--RAA-CGCEVKLWDERLTSVAAQRSLHEAGRKVKDSREVI 120
Query: 182 DAYAAVILLERYF 194
D AA ++L+ +
Sbjct: 121 DQVAAQLILQGWL 133
>gi|383501876|ref|YP_005415235.1| Holliday junction resolvase-like protein [Rickettsia australis str.
Cutlack]
gi|378932887|gb|AFC71392.1| Holliday junction resolvase-like protein [Rickettsia australis str.
Cutlack]
Length = 154
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + +IGLP
Sbjct: 20 IAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLLNIVEKYKVCGVVIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNIVMKFAEEFT---KSINLPIYLQDERLTTKAANNFLKSFGMKRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|403050354|ref|ZP_10904838.1| Holliday junction resolvase-like protein [Acinetobacter bereziniae
LMG 1003]
Length = 147
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ PL + ++ G +LL+I ++ + + F++GLP +
Sbjct: 11 IAFDFGTQKMGMAVGSSLIESATPLALFPMKDGIPNWDELLKIVKQHQPNLFLVGLPLNM 70
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + ++DE T+ EA D + + A++ D
Sbjct: 71 DDSESELSTRARKFARRL---RHQTNIETVMVDERLTTREARDELEHYQAQGRAKKLAAD 127
Query: 183 AYAAVILLERYF 194
+ AA + +E ++
Sbjct: 128 SIAAALFIESWY 139
>gi|399028869|ref|ZP_10729992.1| RNAse H-fold protein YqgF [Flavobacterium sp. CF136]
gi|398073464|gb|EJL64638.1| RNAse H-fold protein YqgF [Flavobacterium sp. CF136]
Length = 138
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 62/132 (46%), Gaps = 4/132 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + + L L + +E+ + +IG PK +G
Sbjct: 5 LSIDYGQKRTGIAVTDEMQIIASGLTTVPTNTLIDFLKDYFAKEKVEAVLIGEPKQMNGQ 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+ ++ ++ + + +V +DE TS A MI+ GLSK RQ K D
Sbjct: 65 PSESASIIKGFVTHFSNIFPD--MKVVRVDERFTSKMAFQTMIDSGLSKKQRQNKGLIDE 122
Query: 184 YAAVILLERYFS 195
+A I+L+ Y S
Sbjct: 123 ISATIMLQDYLS 134
>gi|262374013|ref|ZP_06067290.1| conserved hypothetical protein [Acinetobacter junii SH205]
gi|262311024|gb|EEY92111.1| conserved hypothetical protein [Acinetobacter junii SH205]
Length = 147
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 68/132 (51%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G QLL++ + + + F++GLP +
Sbjct: 11 MAFDFGTQKMGIAIGQSAIESANPLPLFIMKDGIPDWNQLLKLVKEWQPNLFLVGLPLNM 70
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + + W ++DE T+ EA + + + A++ D
Sbjct: 71 DDSESELSARARKFARRLRHQTNIQTW---MVDERLTTREAREELESYQSKGQAKRLSAD 127
Query: 183 AYAAVILLERYF 194
++AA +L++ ++
Sbjct: 128 SFAAALLIQSWY 139
>gi|407785606|ref|ZP_11132753.1| Holliday junction resolvase-like protein [Celeribacter baekdonensis
B30]
gi|407202556|gb|EKE72546.1| Holliday junction resolvase-like protein [Celeribacter baekdonensis
B30]
Length = 157
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/128 (28%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 67 GVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSWD 123
G+D G G+A+S P T ++ + L+ + LL + + E ++GLP++ D
Sbjct: 24 GLDFGDKTIGVAISDRLRSVASPTTTIRRKKFTLDAEALLALFKEREVGGIVLGLPRNMD 83
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
GSE P+ K R+ A LA + DE +S A M+ +S++ R K D
Sbjct: 84 GSEGPRCQKTRAFARNLAQLTE---IPITFWDERLSSVAADRAMLEADMSRAKRAEKIDQ 140
Query: 184 YAAVILLE 191
AA ++L+
Sbjct: 141 VAAGVILQ 148
>gi|300854403|ref|YP_003779387.1| Holliday junction resolvase [Clostridium ljungdahlii DSM 13528]
gi|300434518|gb|ADK14285.1| predicted Holliday junction resolvase [Clostridium ljungdahlii DSM
13528]
Length = 137
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 70/134 (52%), Gaps = 10/134 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
LG+D+G G+ALS G + +T ++ + ++ +++ L+ I ++ + + GLPK+
Sbjct: 4 LGLDIGDRTIGVALSDPLGITAQGITTVRRKNQEKDIEELKSICEKYGVECIVSGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRL--AVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+G+ QS KV S + +++ + W DE T+ A MI LS++ R+
Sbjct: 64 NGTLGLQSEKVLSFCKVIEQSIKVPIKMW-----DERLTTVAAHRAMIEGDLSRAKRKKI 118
Query: 181 TDAYAAVILLERYF 194
D AA+ +L+ Y
Sbjct: 119 VDKMAAIYILQGYL 132
>gi|262283641|ref|ZP_06061406.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
gi|262260698|gb|EEY79399.1| conserved hypothetical protein [Streptococcus sp. 2_1_36FAA]
Length = 139
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 70/136 (51%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++++ ++ E +L E+ + D+F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ R+ ++ G V DE T+ A +RM+ +S++ R+
Sbjct: 64 NMNNTSGPRVEASRAYGAKV---TELFGLPVEYQDERLTTV-AAERMLIEQADVSRNKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|334315850|ref|YP_004548469.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83]
gi|407720251|ref|YP_006839913.1| holliday junction resolvase-like protein [Sinorhizobium meliloti
Rm41]
gi|418403243|ref|ZP_12976737.1| Holliday junction resolvase-like protein [Sinorhizobium meliloti
CCNWSX0020]
gi|334094844|gb|AEG52855.1| Holliday junction resolvase YqgF [Sinorhizobium meliloti AK83]
gi|359502785|gb|EHK75353.1| Holliday junction resolvase-like protein [Sinorhizobium meliloti
CCNWSX0020]
gi|407318483|emb|CCM67087.1| Holliday junction resolvase-like protein [Sinorhizobium meliloti
Rm41]
Length = 165
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/129 (28%), Positives = 65/129 (50%), Gaps = 8/129 (6%)
Query: 67 GVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
G+DLG G+++S + F + +++ LL A++E+ FIIGLP + D
Sbjct: 21 GLDLGTKTIGISVSDLGRRFATPREVIRRVKFGADAQALLSFAEKEKIAAFIIGLPVNMD 80
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKTD 182
GSE P+ R+ + E+ ++L + R S A +R +I M +S+ R + D
Sbjct: 81 GSEGPRCQATRAFVRTM----GEKTDIPFVLWDERLSTVAAERVLIEMDVSRKKRAERID 136
Query: 183 AYAAVILLE 191
+ AA +L+
Sbjct: 137 SAAASFILQ 145
>gi|326201373|ref|ZP_08191245.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM
2782]
gi|325988941|gb|EGD49765.1| Holliday junction resolvase YqgF [Clostridium papyrosolvens DSM
2782]
Length = 142
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 71/139 (51%), Gaps = 8/139 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRG--EKLELQLLEIAQREETDEFIIGLPKS 121
LG+D G SR G+A+S G+ + L ++K + +K L+L EI + + +IG P +
Sbjct: 4 LGIDYGDSRIGVAISDPMGWTAQGLEMIKSKESLKKAVLRLSEIIKEYGVTDIVIGYPIN 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
+G++ P++ + +++ + + DE T+ A M +G+ S ++
Sbjct: 64 MNGTKGPRTERTEEFIKKISDFGE---FNIIKWDERLTTVSAHRTMNELGIKASKKKDIV 120
Query: 182 DAYAAVILLERYFS-MSGQ 199
D +AV++L+ Y M+G
Sbjct: 121 DTMSAVLILQGYLDRMAGN 139
>gi|433463848|ref|ZP_20421381.1| Holliday junction resolvase [Halobacillus sp. BAB-2008]
gi|432186971|gb|ELK44331.1| Holliday junction resolvase [Halobacillus sp. BAB-2008]
Length = 138
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQ-----LLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S F + LR ++ + L E+ + E E ++G PK
Sbjct: 4 IGLDVGEKTIGIAISDAFGWTAQGLTTLRWDEKDFNTAKDNLAEVIRDHEVTEAVVGFPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ +G+ P+ + A L E + +L DE T+ A +I+ +S+ R+
Sbjct: 64 NMNGTVGPRGEASQKFAAWLE---EEFRLQTHLWDERLTTMAAERVLIDADVSRKKRKKV 120
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 121 IDKMAAVMILQGYL 134
>gi|302023160|ref|ZP_07248371.1| Holliday junction resolvase-like protein [Streptococcus suis
05HAS68]
gi|330831916|ref|YP_004400741.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
gi|386579043|ref|YP_006075448.1| Holliday junction resolvase-like protein [Streptococcus suis JS14]
gi|386583196|ref|YP_006079599.1| Holliday junction resolvase-like protein [Streptococcus suis D9]
gi|386585264|ref|YP_006081666.1| Holliday junction resolvase-like protein [Streptococcus suis D12]
gi|386587342|ref|YP_006083743.1| Holliday junction resolvase-like protein [Streptococcus suis A7]
gi|389855783|ref|YP_006358026.1| Holliday junction resolvase-like protein [Streptococcus suis ST1]
gi|319757235|gb|ADV69177.1| Holliday junction resolvase-like protein [Streptococcus suis JS14]
gi|329306139|gb|AEB80555.1| Holliday junction resolvase-like protein [Streptococcus suis ST3]
gi|353735342|gb|AER16351.1| Holliday junction resolvase-like protein [Streptococcus suis D9]
gi|353737410|gb|AER18418.1| Holliday junction resolvase-like protein [Streptococcus suis D12]
gi|353739501|gb|AER20508.1| Holliday junction resolvase-like protein [Streptococcus suis ST1]
gi|354984503|gb|AER43401.1| Holliday junction resolvase-like protein [Streptococcus suis A7]
Length = 136
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + EK E +L E+ ++ + D+F++GLPK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ L R V DE T+ A +RM+ +S+ R+
Sbjct: 61 NMNNTSGPRVEASQAYGDLLTERYK---LPVDYQDERLTTV-AAERMLIEQADISRGKRK 116
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 117 KVIDKLAAQLILQNYL 132
>gi|300741579|ref|ZP_07071600.1| putative Holliday junction resolvase [Rothia dentocariosa M567]
gi|300380764|gb|EFJ77326.1| putative Holliday junction resolvase [Rothia dentocariosa M567]
Length = 184
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/136 (28%), Positives = 63/136 (46%), Gaps = 7/136 (5%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ--LLEIAQREETDEFIIGL 118
G +GVD+G +R G +LS G PL L+ +K + L ++ + + E +GL
Sbjct: 7 GVRMGVDVGNARVGTSLSDPDGILATPLKTLRRDSKKNSDRRVLRKLVEVNDVKEIFVGL 66
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERG---WRVYLLDEHRTSAEAVDRMINMGLSKS 175
PK+ G E+ + R A L G ++L+DE T+ A + G+S
Sbjct: 67 PKTMRGGESDSTRMARDYAHALRSELDAEGNTHINIWLVDERLTTVSAHRSLHEAGVSSR 126
Query: 176 ARQTKTDAYAAVILLE 191
+T D AAV +L+
Sbjct: 127 NFKTMVDQVAAVNILQ 142
>gi|227510199|ref|ZP_03940248.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
gi|227513127|ref|ZP_03943176.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
ATCC 11577]
gi|227524342|ref|ZP_03954391.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
ATCC 8290]
gi|227083702|gb|EEI19014.1| crossover junction endodeoxyribonuclease [Lactobacillus buchneri
ATCC 11577]
gi|227088573|gb|EEI23885.1| crossover junction endodeoxyribonuclease [Lactobacillus hilgardii
ATCC 8290]
gi|227190404|gb|EEI70471.1| crossover junction endodeoxyribonuclease [Lactobacillus brevis
subsp. gravesensis ATCC 27305]
Length = 144
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/147 (28%), Positives = 73/147 (49%), Gaps = 15/147 (10%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQ---REETDEFIIGLPK 120
+G+D+G G+A+S G+ + + ++ + E E L +AQ + E D F++GLPK
Sbjct: 4 MGLDVGSKTVGVAVSDSLGWTSQGVEIIPIDEENGEFGLERVAQLVDKYEVDGFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMIN--MGLSKSA 176
+ + S P++ RL E+ ++ V DE T+ EA RM+ +S+
Sbjct: 64 NMNNSLGPRAEASEQYGDRL-----EKKFKLPVDFEDERLTTVEA-QRMLTEEADISRRK 117
Query: 177 RQTKTDAYAAVILLERYFSMSGQGTEI 203
R+ D AA ++L+ Y G+ T I
Sbjct: 118 RKKVIDKLAAGLILQNYLDRKGKLTRI 144
>gi|379058847|ref|ZP_09849373.1| hypothetical protein SproM1_12284 [Serinicoccus profundi MCCC
1A05965]
Length = 178
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 43/134 (32%), Positives = 69/134 (51%), Gaps = 9/134 (6%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLR---GEKLELQLLEIAQREETDEFIIG 117
G LGVD+G +R G+A S G P+ L+ G LE Q+ E A++ E ++G
Sbjct: 14 GVLLGVDVGEARVGVAASDALGLLAHPVATLRRDHDGGSDLE-QIAEEARQREAVLVVVG 72
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
+P+S DG+E + + R A RL R E V L DE ++ +A + + G+ +
Sbjct: 73 MPRSLDGTERVAALRARGYAERLQ-RCLE--VPVRLWDERLSTVDAHRALHSSGVPGRDQ 129
Query: 178 QTKTDAYAAVILLE 191
+ D AAV++L+
Sbjct: 130 RGVVDQVAAVLILQ 143
>gi|453063320|gb|EMF04300.1| Holliday junction resolvase-like protein [Serratia marcescens
VGH107]
Length = 140
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G G A+ + R L K + G L++ ++ + + D ++GLP +
Sbjct: 7 IAFDFGTKSIGAAIGQELTGSARALPAFKAQDGSPDWLKIEKLLKEWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P + + R A RL R G ++ L DE ++ EA + + G ++ + D
Sbjct: 67 DGTEQPVTAQARKFANRLHGRF---GIQIELHDERLSTVEARANLFDRGGFRALDKGSVD 123
Query: 183 AYAAVILLERYF 194
+ +AV++LE +F
Sbjct: 124 SASAVVILESWF 135
>gi|55821927|ref|YP_140369.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus LMG 18311]
gi|55823846|ref|YP_142287.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus CNRZ1066]
gi|445383922|ref|ZP_21427481.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus MTCC 5460]
gi|445396320|ref|ZP_21429216.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus MTCC 5461]
gi|62900908|sp|Q5LXP0.1|RUVX_STRT1 RecName: Full=Putative Holliday junction resolvase
gi|62900909|sp|Q5M292.1|RUVX_STRT2 RecName: Full=Putative Holliday junction resolvase
gi|55737912|gb|AAV61554.1| DNA recombination protein, putative [Streptococcus thermophilus LMG
18311]
gi|55739831|gb|AAV63472.1| DNA recombination protein, putative [Streptococcus thermophilus
CNRZ1066]
gi|444748146|gb|ELW73131.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus MTCC 5461]
gi|444748175|gb|ELW73157.1| Holliday junction resolvase-like protein [Streptococcus
thermophilus MTCC 5460]
Length = 139
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 11/137 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + + ++K+ E E +L E+ + + D+F++GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGVEIIKINEEAKEFGFDRLGELVKEYQVDKFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + +E P+ ++ ++ V DE T+ +A +RM+ +S+ R+
Sbjct: 64 NMNNTEGPRVEASKAYGDKI---KEIFNLPVDYQDERLTTVQA-ERMLVEQADVSRGKRK 119
Query: 179 TKTDAYAAVILLERYFS 195
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|146317727|ref|YP_001197439.1| Holliday junction resolvase-like protein [Streptococcus suis
05ZYH33]
gi|146319916|ref|YP_001199627.1| Holliday junction resolvase-like protein [Streptococcus suis
98HAH33]
gi|223934259|ref|ZP_03626188.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
gi|253750983|ref|YP_003024124.1| Holliday junction resolvase-like protein [Streptococcus suis SC84]
gi|253752883|ref|YP_003026023.1| Holliday junction resolvase-like protein [Streptococcus suis P1/7]
gi|253754708|ref|YP_003027848.1| Holliday junction resolvase-like protein [Streptococcus suis BM407]
gi|386577064|ref|YP_006073469.1| Resolvase, holliday junction-type, YqgF-like protein [Streptococcus
suis GZ1]
gi|403060764|ref|YP_006648980.1| Holliday junction resolvase-like protein [Streptococcus suis S735]
gi|167016513|sp|A4VYN8.1|RUVX_STRS2 RecName: Full=Putative Holliday junction resolvase
gi|167016515|sp|A4VSF0.1|RUVX_STRSY RecName: Full=Putative Holliday junction resolvase
gi|145688533|gb|ABP89039.1| Unknown protein [Streptococcus suis 05ZYH33]
gi|145690722|gb|ABP91227.1| unknown protein [Streptococcus suis 98HAH33]
gi|223897073|gb|EEF63505.1| Holliday junction resolvase YqgF [Streptococcus suis 89/1591]
gi|251815272|emb|CAZ50837.1| putative Holliday junction resolvase [Streptococcus suis SC84]
gi|251817172|emb|CAZ54893.1| putative Holliday junction resolvase [Streptococcus suis BM407]
gi|251819128|emb|CAR44214.1| putative Holliday junction resolvase [Streptococcus suis P1/7]
gi|292557526|gb|ADE30527.1| Resolvase, holliday junction-type, YqgF-like protein [Streptococcus
suis GZ1]
gi|402808090|gb|AFQ99581.1| Holliday junction resolvase-like protein [Streptococcus suis S735]
Length = 139
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 69/136 (50%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + EK E +L E+ ++ + D+F++GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGLERLTELVEQYKVDKFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ L R V DE T+ A +RM+ +S+ R+
Sbjct: 64 NMNNTSGPRVEASQAYGDLLTERYK---LPVDYQDERLTTV-AAERMLIEQADISRGKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|406969585|gb|EKD94203.1| hypothetical protein ACD_27C00007G0002 [uncultured bacterium]
Length = 128
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/129 (31%), Positives = 61/129 (47%), Gaps = 11/129 (8%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
LG+D GL+ GLAL++ PL L KL +L + + + + I+GLP
Sbjct: 5 LGIDYGLAHLGLALAEHTLATPLPFLP-NDSKLLSRLHSLCSQHQVTQIIVGLPTG---- 59
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAYA 185
P + VR A L A V L DE +S EA ++ + G+S R+ +YA
Sbjct: 60 --PLESAVRQFALLLQNHLA---LPVTLHDETLSSYEAQQKLRHPGVSAHKRR-HDHSYA 113
Query: 186 AVILLERYF 194
A ++LE Y
Sbjct: 114 AALILEDYL 122
>gi|328543472|ref|YP_004303581.1| endonuclease [Polymorphum gilvum SL003B-26A1]
gi|326413216|gb|ADZ70279.1| Predicted endonuclease involved in recombination [Polymorphum
gilvum SL003B-26A1]
Length = 166
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 63/137 (45%), Gaps = 8/137 (5%)
Query: 66 LGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKS 121
+G+DLG GLALS +G PL ++ R L+ QLL+I ++GLP +
Sbjct: 23 IGLDLGTRTIGLALSDLGRGIA-SPLETIRRRKFTLDAEQLLKICAEHRVGGLVLGLPLN 81
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DGSE P+ R+ A LA + + DE ++A +I S++ R
Sbjct: 82 MDGSEGPRVQATRAFARNLAEKT---DLPITYWDERLSTAAVTRTLIEADRSRARRAELV 138
Query: 182 DAYAAVILLERYFSMSG 198
D AA +L+ + G
Sbjct: 139 DKMAAAYILQGFLDRLG 155
>gi|228993125|ref|ZP_04153047.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442]
gi|228999173|ref|ZP_04158755.1| Holliday junction resolvase [Bacillus mycoides Rock3-17]
gi|229006721|ref|ZP_04164355.1| Holliday junction resolvase [Bacillus mycoides Rock1-4]
gi|228754582|gb|EEM03993.1| Holliday junction resolvase [Bacillus mycoides Rock1-4]
gi|228760790|gb|EEM09754.1| Holliday junction resolvase [Bacillus mycoides Rock3-17]
gi|228766584|gb|EEM15225.1| Holliday junction resolvase [Bacillus pseudomycoides DSM 12442]
Length = 137
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G+ + L +K+ E+ + ++ E+ ++ D+ I+GLPK
Sbjct: 4 LGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYNVDKIIVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ +G+ P+ + A L V + DE ++ A +I+ +S+ R+
Sbjct: 64 NMNGTIGPRGEACQQFAQSLRELLQ---LDVMMWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 121 IDKMAAVVILQGYL 134
>gi|114778470|ref|ZP_01453314.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1]
gi|114551195|gb|EAU53754.1| Holliday junction resolvase YqgF [Mariprofundus ferrooxydans PV-1]
Length = 168
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/138 (27%), Positives = 63/138 (45%), Gaps = 5/138 (3%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+ +D+G+ R G+A+ G R +T L R QL ++ + + GLPK+ D
Sbjct: 30 IALDIGMKRIGVAVCDRFGISCRGVTCLMRRDHGWPQQLAKVVREYGAKSVVAGLPKNMD 89
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E Q+ R+ L V DE ++ A +R+ GL + Q K D
Sbjct: 90 GTEGVQAADARAAVAELKKTLP---LPVTFQDERLSTWTAKERLYAQGLREKKVQEKLDQ 146
Query: 184 YAAVILLERYFSMSGQGT 201
AA ++LE + + + Q T
Sbjct: 147 TAAAVILEDFLASNPQLT 164
>gi|270290966|ref|ZP_06197189.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|304385235|ref|ZP_07367580.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici
DSM 20284]
gi|418069518|ref|ZP_12706795.1| Holliday junction resolvase-like protein [Pediococcus acidilactici
MA18/5M]
gi|427439524|ref|ZP_18924179.1| Holliday junction resolvase-like protein [Pediococcus lolii NGRI
0510Q]
gi|270280362|gb|EFA26197.1| conserved hypothetical protein [Pediococcus acidilactici 7_4]
gi|304328442|gb|EFL95663.1| crossover junction endodeoxyribonuclease [Pediococcus acidilactici
DSM 20284]
gi|357536049|gb|EHJ20080.1| Holliday junction resolvase-like protein [Pediococcus acidilactici
MA18/5M]
gi|425788360|dbj|GAC44967.1| Holliday junction resolvase-like protein [Pediococcus lolii NGRI
0510Q]
Length = 146
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 71/140 (50%), Gaps = 9/140 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + + ++ + ++ E ++ E+ + E F+IGLPK
Sbjct: 4 MGMDVGSRTVGIAVSDQLGWTAQGVEIIPINEDEGEFGISRVKELVSQYEVAGFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQT 179
+ + +E P+ R+ G+L G + DE T+ EA +I S+S R+
Sbjct: 64 NMNNTEGPRVEAARNY-GKLLTETF--GLPIDFQDERLTTVEAERMLIEQADTSRSKRKK 120
Query: 180 KTDAYAAVILLERYFSMSGQ 199
D AA ++LE Y + G+
Sbjct: 121 VIDKLAASLILENYLNGHGK 140
>gi|372325178|ref|ZP_09519767.1| Putative Holliday junction resolvase [Oenococcus kitaharae DSM
17330]
gi|366983986|gb|EHN59385.1| Putative Holliday junction resolvase [Oenococcus kitaharae DSM
17330]
Length = 144
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/141 (29%), Positives = 72/141 (51%), Gaps = 11/141 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQ---REETDEFIIGLPK 120
LG+D+G G+A S G+ + ++++ +K E L +AQ ++ +IGLPK
Sbjct: 4 LGLDVGSRTVGVAQSDPLGWTASSVEIIRINEDKGEFGLDRLAQLIDEKKATGIVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + SE P+ + R GR+ A G + DE TS +A +RM+ LS+ R+
Sbjct: 64 NMNNSEGPRVDASRRY-GRMV--AKRFGLPIDYEDERLTSVQA-NRMLIEEADLSREKRK 119
Query: 179 TKTDAYAAVILLERYFSMSGQ 199
D+ AA ++L+ Y G+
Sbjct: 120 KVIDSLAAQLILQNYLDRKGK 140
>gi|313143475|ref|ZP_07805668.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|386762635|ref|YP_006236271.1| Holliday junction resolvase-like protein [Helicobacter cinaedi
PAGU611]
gi|313128506|gb|EFR46123.1| conserved hypothetical protein [Helicobacter cinaedi CCUG 18818]
gi|385147652|dbj|BAM13160.1| Holliday junction resolvase-like protein [Helicobacter cinaedi
PAGU611]
Length = 140
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 33/133 (24%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLT-VLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDG 124
L D+GL R GLA+++ + P+ +++ + +L EI + E + ++GLP +
Sbjct: 7 LACDVGLKRIGLAVTQLGIILPIEPIIRKNRNQASKELSEILKTREIEILVVGLPSGGEA 66
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLS---KSARQTKT 181
+ ++ G +A G + +DE TS EA+ MG+ K + +
Sbjct: 67 GHSDTRKRILHFVGLVAF-----GGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQKDGRL 121
Query: 182 DAYAAVILLERYF 194
D+ +A ++LER+
Sbjct: 122 DSLSATLILERFL 134
>gi|383312399|ref|YP_005365200.1| Holliday junction resolvase-like protein [Candidatus Rickettsia
amblyommii str. GAT-30V]
gi|378931059|gb|AFC69568.1| Holliday junction resolvase-like protein [Candidatus Rickettsia
amblyommii str. GAT-30V]
Length = 152
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 12/131 (9%)
Query: 66 LGVDLGLSRTGLALSK-----GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPK 120
+ +D G + G+ALS + +T +K+ + LL I ++ + IIGLP
Sbjct: 20 IAIDYGSKKLGIALSNQERSIAMPLNTITEIKI----VITALLNIIEKYKVCGVIIGLPI 75
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
G+ T Q+N V A LA +YL DE T+ A + + ++G+ + R
Sbjct: 76 DMSGAVTEQTNIVMKFAEELA---KSINLPIYLQDERLTTKAANNFLKSLGVKRKDRNNN 132
Query: 181 TDAYAAVILLE 191
DA AA ++LE
Sbjct: 133 DDAVAASMILE 143
>gi|374603737|ref|ZP_09676712.1| Holliday junction resolvase YqgF [Paenibacillus dendritiformis
C454]
gi|374390617|gb|EHQ61964.1| Holliday junction resolvase YqgF [Paenibacillus dendritiformis
C454]
Length = 138
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKSW 122
LG+D G + G+A+S G+ + L V+ R + +L+ + +I + +E +IGLPK+
Sbjct: 4 LGLDYGDRKIGVAVSDAFGWTAQGLEVIVRRKPEDDLRRIGDIIKEHGVEEIVIGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P+ S A V G V+L DE ++ A ++ +S+ R+ D
Sbjct: 64 NGTIGPRGEISMSYA---EVLKQSFGLPVHLWDERLSTVSAERALLEADVSRKKRRQVID 120
Query: 183 AYAAVILLERYF 194
AA I+L+ Y
Sbjct: 121 KMAATIILQTYL 132
>gi|319651656|ref|ZP_08005783.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2]
gi|317396723|gb|EFV77434.1| Holliday junction resolvase [Bacillus sp. 2_A_57_CT2]
Length = 135
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 70/137 (51%), Gaps = 12/137 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+ALS G+ + L +K+ E+ E ++ EI + E + ++GLPK
Sbjct: 1 MGLDVGSKTVGVALSDAFGWTAQGLETIKISEEEKEFGFERISEIIKEHEVSKIVVGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAER--GWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
+ +G+ P+ + A L E+ G V L DE ++ A ++ +S+ R+
Sbjct: 61 NMNGTIGPRGEASQFYASEL-----EKLFGLPVVLWDERLSTMAAERVLLEADVSRKKRK 115
Query: 179 TKTDAYAAVILLERYFS 195
D AAV++L+ + +
Sbjct: 116 KVIDKMAAVMILQGFLN 132
>gi|406926361|gb|EKD62601.1| hypothetical protein ACD_52C00115G0004 [uncultured bacterium]
Length = 125
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 39/131 (29%), Positives = 69/131 (52%), Gaps = 15/131 (11%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
+G+D G S+ GLA S+ PLTV LRG +L + +++ ++ + ++G+ ++ G
Sbjct: 4 IGIDYGASKIGLASSETKIAEPLTV--LRGNRLFERTVDLIKKYSPEMVVVGISENESGK 61
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEA--VDRMINMGLSKSARQTKTDA 183
++ R A RL + G + L DE ++ EA + R+ N+G + R DA
Sbjct: 62 QS------REFARRL---SKTTGIKTVLEDETLSTYEAQNLARLQNIG--RRRRSKLEDA 110
Query: 184 YAAVILLERYF 194
+AA I+L+ Y
Sbjct: 111 FAATIVLQSYL 121
>gi|121535968|ref|ZP_01667762.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1]
gi|121305460|gb|EAX46408.1| Holliday junction resolvase YqgF [Thermosinus carboxydivorans Nor1]
Length = 140
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 67/139 (48%), Gaps = 6/139 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLL---EIAQREETDEFIIGLPKSW 122
L +D+G G A+S + V +R E + E+A+ E I+GLPK+
Sbjct: 4 LALDVGEKTIGAAVSDELLLTAQGVEVIRRMSPEADMARIRELAEHFEATVIIVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ PQ KV++ A L A G V L DE ++ A +I + ++ R+ D
Sbjct: 64 NGTIGPQGEKVKAFASELQNYLA--GIEVRLWDERLSTVAAERSLIAADVRRAKRRQVID 121
Query: 183 AYAAVILLERYF-SMSGQG 200
AAV +L+ Y S+S +G
Sbjct: 122 KMAAVFILQGYLDSLSRKG 140
>gi|384083120|ref|ZP_09994295.1| Holliday junction resolvase-like protein [gamma proteobacterium
HIMB30]
Length = 137
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 64 FSLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
+LG D GLSR G+A + PLT L + + +E E + D ++GLP
Sbjct: 3 LALGFDYGLSRIGVATGQTLTQTASPLTALPAQNGTPHWETVEQLLAEWKPDVVVVGLPL 62
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
DG+ + +++ + R+ R G +V ++E+ ++ EA + + G S + K
Sbjct: 63 HQDGTMSDMADRAKKFGQRIHGRF---GVQVAFINEYESTREAREHLNYRG-KASDQDGK 118
Query: 181 TDAYAAVILLERYF 194
DA AA ++LER+
Sbjct: 119 LDATAASVILERWL 132
>gi|291440782|ref|ZP_06580172.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
gi|291343677|gb|EFE70633.1| conserved hypothetical protein [Streptomyces ghanaensis ATCC 14672]
Length = 154
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/155 (28%), Positives = 69/155 (44%), Gaps = 12/155 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R +L ++ + E E ++
Sbjct: 1 MRQGRRLAIDVGDARIGVASCDPGGILATPVETVPGRDVPAAHRRLKQLIEEYEPIEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR A LA V L+DE T+ A + G+
Sbjct: 61 GLPRSLKGGEGPAAAKVRGFARELARMIMP--VPVRLVDERMTTVTASQGLRASGVKSKK 118
Query: 177 RQTKTDAYAAVILLERYFSM-------SGQGTEIV 204
++ D AAVI+L++ G+G E+V
Sbjct: 119 GRSVIDQAAAVIILQQALESERVSGEPPGEGVEVV 153
>gi|323359965|ref|YP_004226361.1| endonuclease [Microbacterium testaceum StLB037]
gi|323276336|dbj|BAJ76481.1| predicted endonuclease [Microbacterium testaceum StLB037]
Length = 157
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 44/156 (28%), Positives = 74/156 (47%), Gaps = 6/156 (3%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117
+R G LG+D+G +R G+A S G P+ + +GE + +++ +A E E ++G
Sbjct: 4 FRRGIRLGIDVGRARVGVARSDPDGVLAVPVETVPRKGEPVR-RIVALAAEYEAFEVLVG 62
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
LP + G +T + R+ A AA V L+DE ++ A + G S+
Sbjct: 63 LPLNLRGEDTASTADARAFA---QELAAALAAPVRLVDERLSTVSAHGVLRQAGRSQRDS 119
Query: 178 QTKTDAYAAVILLERYFSMSGQGTEIVLPKRVDLQE 213
++ D AAV+LL++ + Q E P QE
Sbjct: 120 RSIVDQVAAVVLLQQALDVERQSGEPAGPAVTPGQE 155
>gi|297624148|ref|YP_003705582.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093]
gi|297165328|gb|ADI15039.1| Holliday junction resolvase YqgF [Truepera radiovictrix DSM 17093]
Length = 154
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 68/136 (50%), Gaps = 13/136 (9%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLT----VLKLRGEKLELQLLE-IAQREETDEFIIGLPK 120
L +D+G R G+A +G P V+ R + ++ + +A E ++GLP+
Sbjct: 6 LALDVGERRIGVA--RGEVGSPFAFGRGVIARRSLRADVAAVRALADAEGAARVVVGLPR 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
G ++ Q+++VR+ A +L +AA G V DE TS A ++ GL + RQ K
Sbjct: 64 RLRGGDSAQTSRVRAFAAQL--QAA--GLEVVFEDERFTSRIATQSLVKSGLKRGQRQEK 119
Query: 181 --TDAYAAVILLERYF 194
D AAV++LE Y
Sbjct: 120 GRVDEGAAVLILETYL 135
>gi|163785970|ref|ZP_02180418.1| Holliday junction resolvase-like protein [Flavobacteriales
bacterium ALC-1]
gi|159877830|gb|EDP71886.1| Holliday junction resolvase-like protein [Flavobacteriales
bacterium ALC-1]
Length = 137
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 37/135 (27%), Positives = 61/135 (45%), Gaps = 4/135 (2%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +D G RTGLA++ + + + ++L L E ++F++GLPK
Sbjct: 2 GRILAIDYGTKRTGLAVTDEMQIIASGLTTVETKELVPFLKNYVDTESVEKFVVGLPKQM 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT- 181
D + + ++ L A + +DE TS A MI+ GL K RQ K
Sbjct: 62 DNTASESEVYIKKFLEILT--KAIPHIPIERVDERFTSKMAFQTMIDSGLKKKQRQNKAL 119
Query: 182 -DAYAAVILLERYFS 195
D +A ++L+ Y +
Sbjct: 120 IDEISATLILQSYLT 134
>gi|338998486|ref|ZP_08637160.1| Holliday junction resolvase YqgF [Halomonas sp. TD01]
gi|338764803|gb|EGP19761.1| Holliday junction resolvase YqgF [Halomonas sp. TD01]
Length = 151
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKSW 122
L D G R G+A+ R LT L R + ++ + + + D F++GLP +
Sbjct: 10 LAFDFGTRRIGVAVGNELLNSARELTPLTARDGIPDWNVVTRLVEEWQPDLFVVGLPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E+ S + R RL R G ++DE ++ EA G + R+ D
Sbjct: 70 DGTESAMSARSRKFGNRLHGR---YGKPCEMVDERGSTREAKQIAHAAGHRGNYREESVD 126
Query: 183 AYAAVILLERYFS 195
AAV++LE +F+
Sbjct: 127 GIAAVLILEGWFA 139
>gi|302541104|ref|ZP_07293446.1| putative Holliday junction resolvase [Streptomyces hygroscopicus
ATCC 53653]
gi|302458722|gb|EFL21815.1| putative Holliday junction resolvase [Streptomyces himastatinicus
ATCC 53653]
Length = 124
Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 54/112 (48%), Gaps = 9/112 (8%)
Query: 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160
+L I E E +IGLP+S +G E P + KVR+ A LA R + V L+DE T+
Sbjct: 15 RLAAIVAEYEPIEVVIGLPRSLNGREGPAAAKVRTFARELARRV--QPVSVRLVDERMTT 72
Query: 161 AEAVDRMINMGLSKSARQTKTDAYAAVILLERYFSMS-------GQGTEIVL 205
A + G+S ++ D AAV++L+ G+ E+V+
Sbjct: 73 VTAAHGLRASGVSSKKGRSVVDQAAAVVILQSALETERASGRAPGEAVEVVI 124
>gi|116494331|ref|YP_806065.1| Holliday junction resolvase-like protein [Lactobacillus casei ATCC
334]
gi|191637663|ref|YP_001986829.1| Holliday junction resolvase-like protein [Lactobacillus casei BL23]
gi|227534480|ref|ZP_03964529.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239629714|ref|ZP_04672745.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|301065842|ref|YP_003787865.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang]
gi|385819394|ref|YP_005855781.1| Putative Holliday junction resolvase [Lactobacillus casei LC2W]
gi|385822559|ref|YP_005858901.1| Putative Holliday junction resolvase [Lactobacillus casei BD-II]
gi|409996517|ref|YP_006750918.1| Holliday junction resolvase [Lactobacillus casei W56]
gi|417980043|ref|ZP_12620728.1| putative Holliday junction resolvase [Lactobacillus casei 12A]
gi|417982879|ref|ZP_12623527.1| putative Holliday junction resolvase [Lactobacillus casei 21/1]
gi|417986114|ref|ZP_12626689.1| putative Holliday junction resolvase [Lactobacillus casei 32G]
gi|417988974|ref|ZP_12629498.1| putative Holliday junction resolvase [Lactobacillus casei A2-362]
gi|417992324|ref|ZP_12632685.1| putative Holliday junction resolvase [Lactobacillus casei CRF28]
gi|417995571|ref|ZP_12635863.1| putative Holliday junction resolvase [Lactobacillus casei M36]
gi|417998545|ref|ZP_12638764.1| putative Holliday junction resolvase [Lactobacillus casei T71499]
gi|418001402|ref|ZP_12641547.1| putative Holliday junction resolvase [Lactobacillus casei UCD174]
gi|418007376|ref|ZP_12647262.1| putative Holliday junction resolvase [Lactobacillus casei UW4]
gi|418010210|ref|ZP_12649993.1| putative Holliday junction resolvase [Lactobacillus casei Lc-10]
gi|418014591|ref|ZP_12654186.1| putative Holliday junction resolvase [Lactobacillus casei Lpc-37]
gi|122264241|sp|Q03AZ9.1|RUVX_LACC3 RecName: Full=Putative Holliday junction resolvase
gi|226731624|sp|B3WC70.1|RUVX_LACCB RecName: Full=Putative Holliday junction resolvase
gi|116104481|gb|ABJ69623.1| RNase H-like ribonuclease [Lactobacillus casei ATCC 334]
gi|190711965|emb|CAQ65971.1| Putative Holliday junction resolvase [Lactobacillus casei BL23]
gi|227187879|gb|EEI67946.1| crossover junction endodeoxyribonuclease [Lactobacillus paracasei
subsp. paracasei ATCC 25302]
gi|239528400|gb|EEQ67401.1| conserved hypothetical protein [Lactobacillus paracasei subsp.
paracasei 8700:2]
gi|300438249|gb|ADK18015.1| RNase H-like ribonuclease [Lactobacillus casei str. Zhang]
gi|327381721|gb|AEA53197.1| Putative Holliday junction resolvase [Lactobacillus casei LC2W]
gi|327384886|gb|AEA56360.1| Putative Holliday junction resolvase [Lactobacillus casei BD-II]
gi|406357529|emb|CCK21799.1| Putative Holliday junction resolvase [Lactobacillus casei W56]
gi|410525943|gb|EKQ00837.1| putative Holliday junction resolvase [Lactobacillus casei 12A]
gi|410526870|gb|EKQ01748.1| putative Holliday junction resolvase [Lactobacillus casei 32G]
gi|410529334|gb|EKQ04152.1| putative Holliday junction resolvase [Lactobacillus casei 21/1]
gi|410534008|gb|EKQ08673.1| putative Holliday junction resolvase [Lactobacillus casei CRF28]
gi|410537244|gb|EKQ11822.1| putative Holliday junction resolvase [Lactobacillus casei M36]
gi|410540701|gb|EKQ15213.1| putative Holliday junction resolvase [Lactobacillus casei A2-362]
gi|410540960|gb|EKQ15464.1| putative Holliday junction resolvase [Lactobacillus casei T71499]
gi|410546725|gb|EKQ20970.1| putative Holliday junction resolvase [Lactobacillus casei UCD174]
gi|410549320|gb|EKQ23493.1| putative Holliday junction resolvase [Lactobacillus casei UW4]
gi|410553220|gb|EKQ27224.1| putative Holliday junction resolvase [Lactobacillus casei Lpc-37]
gi|410554417|gb|EKQ28393.1| putative Holliday junction resolvase [Lactobacillus casei Lc-10]
Length = 144
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + L ++++ +K + +L E+ ++ E F++GLPK
Sbjct: 4 MGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKEQFGIARLKELVKQYEVTAFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ + S P++ K ++ L G V +DE T+ EA +I + RQ +
Sbjct: 64 NMNNSIGPRAEKSQAYGELLKTTF---GLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120
Query: 181 T-DAYAAVILLERYFSMSG 198
D AA ++L+ Y G
Sbjct: 121 VIDKLAAQMILQNYLDAKG 139
>gi|57242343|ref|ZP_00370282.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis
RM3195]
gi|57017023|gb|EAL53805.1| conserved hypothetical protein TIGR00250 [Campylobacter upsaliensis
RM3195]
Length = 127
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 66/132 (50%), Gaps = 12/132 (9%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+L +DLGL R GLAL PL +L+ + ++ ++ + + + I+GLPK
Sbjct: 4 ALALDLGLKRIGLALYVENIAVPLNAILRKNRNQAASEVQKLIKEHQISKLIVGLPKGG- 62
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT-KTD 182
SE + +V+ L E V +DE TS EA D +G++ S ++ K D
Sbjct: 63 ASEVEMTKRVQHFISLL-----EFDGEVIFVDEAYTSKEAQD----LGVANSRKKDGKLD 113
Query: 183 AYAAVILLERYF 194
+ AA+I+L YF
Sbjct: 114 SLAALIMLRGYF 125
>gi|358461217|ref|ZP_09171385.1| Holliday junction resolvase [Frankia sp. CN3]
gi|357073681|gb|EHI83180.1| Holliday junction resolvase [Frankia sp. CN3]
Length = 144
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/125 (35%), Positives = 57/125 (45%), Gaps = 6/125 (4%)
Query: 74 RTGLALSKGFCVRPLTVLKLRGEKLE----LQLLEIAQREETDEFIIGLPKSWDGSETPQ 129
R G+A S V L V LR + E QL EIA+ E ++GLP + G E
Sbjct: 2 RVGVAASDPDGVLALPVGTLRRDVSENRDLAQLAEIAREREAVAVVVGLPMTLAGEEGQA 61
Query: 130 SNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAYAAVIL 189
++ R A LA R A V L+DE T+ A RM GL AR+ D AAV +
Sbjct: 62 ASAARQYARMLADRVAP--VPVRLVDERLTTVAAHRRMAERGLRSRARRDLVDQEAAVQI 119
Query: 190 LERYF 194
L+
Sbjct: 120 LQHAL 124
>gi|406983750|gb|EKE04910.1| hypothetical protein ACD_19C00429G0070 [uncultured bacterium]
Length = 124
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 31/130 (23%), Positives = 63/130 (48%), Gaps = 16/130 (12%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSWDG 124
LG+D G S+ GLALS G P V++ + +K+ + I ++++ ++ ++G+ ++ G
Sbjct: 4 LGIDYGRSKIGLALSDGKLAEPYQVIRYKDFDKMIAHINRIIEKQKIEKVVVGVSENEMG 63
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
E+ + ++ DE +S +A + I + + R+ DA+
Sbjct: 64 EESKEFANF---------------FKAETFDETLSSHDAQELSIASHMGRKKRKEMEDAF 108
Query: 185 AAVILLERYF 194
AA I+L+ Y
Sbjct: 109 AASIMLQNYI 118
>gi|352105565|ref|ZP_08960880.1| Holliday junction resolvase-like protein [Halomonas sp. HAL1]
gi|350598438|gb|EHA14558.1| Holliday junction resolvase-like protein [Halomonas sp. HAL1]
Length = 151
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L D G R G+A+ R LT L R + ++ +E + D ++GLP +
Sbjct: 10 LAFDYGTRRIGVAVGNELLHSARELTPLTARDGIPDWNVVSRLLKEWQPDLLVVGLPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE+ S + R RL R G ++DE T+ EA G + RQ D
Sbjct: 70 DGSESEMSTRARKFGNRLHGRY---GKPCEMVDERGTTREAKMIAREAGHKGNYRQDSVD 126
Query: 183 AYAAVILLERYFS 195
AA+++LE +F+
Sbjct: 127 GIAAILILEGWFA 139
>gi|212709356|ref|ZP_03317484.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM
30120]
gi|422019468|ref|ZP_16366016.1| Holliday junction resolvase-like protein [Providencia alcalifaciens
Dmel2]
gi|212688268|gb|EEB47796.1| hypothetical protein PROVALCAL_00392 [Providencia alcalifaciens DSM
30120]
gi|414103307|gb|EKT64885.1| Holliday junction resolvase-like protein [Providencia alcalifaciens
Dmel2]
Length = 139
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 68/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLPK 120
G S+GV +G TG A R LT LK + + +E +E + +I GLP
Sbjct: 12 GTKSIGVAVGQEITGTA-------RALTSLKASDGRPDWSQIEKLLKEWQPQLVIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E +++ R+ A R+ R G +V L DE ++ EA + G ++ + K
Sbjct: 65 NMDGTEQLVTSQARNFANRIHGRF---GVQVQLHDERLSTVEAKAGLFEQGGYRALSKGK 121
Query: 181 TDAYAAVILLERYF 194
D+ +AV++LE +F
Sbjct: 122 VDSASAVVILESWF 135
>gi|389792876|ref|ZP_10196058.1| Holliday junction resolvase-like protein [Rhodanobacter fulvus
Jip2]
gi|388435740|gb|EIL92637.1| Holliday junction resolvase-like protein [Rhodanobacter fulvus
Jip2]
Length = 148
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/137 (30%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQREE-TDEFIIGLPKS 121
+LG D+G G+A+ R + ++R +E +++ Q+ D F++GLP +
Sbjct: 4 ALGFDVGSRIIGVAVGNTITSSARAVATAQVRDGNIEWHVIDALQKTWLPDTFVVGLPLT 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAER-GWRVYLLDEHRTSAEAVDRMIN---MGLSKSAR 177
DG+E P S R R A + ER G V L+DE +S EA R + +GL +
Sbjct: 64 LDGAEQPASRGAR----RFATQLRERYGVPVVLIDERHSSQEAARRFAHARSVGLKRRRH 119
Query: 178 QTKTDAYAAVILLERYF 194
DA AA ++LE +
Sbjct: 120 ADDIDAEAAAVILEHWL 136
>gi|363891685|ref|ZP_09318863.1| RNAse H-fold protein YqgF [Eubacteriaceae bacterium CM2]
gi|402837576|ref|ZP_10886095.1| RNAse H domain protein, YqgF family [Eubacteriaceae bacterium
OBRC8]
gi|361965228|gb|EHL18219.1| RNAse H-fold protein YqgF [Eubacteriaceae bacterium CM2]
gi|402274869|gb|EJU24039.1| RNAse H domain protein, YqgF family [Eubacteriaceae bacterium
OBRC8]
Length = 142
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/138 (24%), Positives = 64/138 (46%), Gaps = 5/138 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQL---LEIAQREETDEFIIGLPKSW 122
L +D+G + G+A++ + +R + LE Q+ + I ++GLPK+
Sbjct: 5 LALDVGKKKIGIAITDLLQITAQPHSTIRSKNLEEQIDKIIAIIDENSIKTVVVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+ SE Q++ ++ R + A ++ + +DE TS A+ + +M + K + D
Sbjct: 65 NDSEGDQASWTKTFVER--ILAKKQDIEIVYIDERLTSKMALSSLKHMNMKKIKEKGLID 122
Query: 183 AYAAVILLERYFSMSGQG 200
AAV +LE Y G
Sbjct: 123 TVAAVNILETYLKRKENG 140
>gi|291615388|ref|YP_003525545.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1]
gi|291585500|gb|ADE13158.1| Holliday junction resolvase YqgF [Sideroxydans lithotrophicus ES-1]
Length = 148
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/144 (29%), Positives = 62/144 (43%), Gaps = 10/144 (6%)
Query: 63 GFSLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLLEIAQ---REETDEFIIG 117
G L D G R G+A+ RPLT + EK +L+ IA+ + ++G
Sbjct: 8 GTLLAFDFGTKRIGVAVGNTVSATARPLTTIG--AEKNDLRFAAIAELLKEWQPAALVVG 65
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
LP + DG+ + R A RL R L+DE TSA A + G+ +
Sbjct: 66 LPCNDDGTPHEMTALSRRFANRLKGR---FNLPTLLIDERYTSAAASSALDKEGIHGRKQ 122
Query: 178 QTKTDAYAAVILLERYFSMSGQGT 201
+ D YAA +L+ YF GT
Sbjct: 123 KNLIDQYAAQQILQAYFDEPSAGT 146
>gi|406981016|gb|EKE02542.1| hypothetical protein ACD_20C00363G0008 [uncultured bacterium]
Length = 139
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 61/133 (45%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+G+D+G R G+A+S + RP+ + E ++ + ++ + I+GLPK+
Sbjct: 7 IGLDVGTKRIGIAVSDPLFILARPVKTIPRYPENKSIEEIKDVCKEYNVSVIIVGLPKNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGS PQ+ + A L V DE +S EA +I S + D
Sbjct: 67 DGSIGPQAQDAMAFAKLLEDNIQ---TEVVFEDERLSSYEAERILIEQNKKPSKNKALID 123
Query: 183 AYAAVILLERYFS 195
AA I+L++Y +
Sbjct: 124 MEAAAIVLQQYLN 136
>gi|374335481|ref|YP_005092168.1| Holliday junction resolvase-like protein [Oceanimonas sp. GK1]
gi|372985168|gb|AEY01418.1| Holliday junction resolvase-like protein [Oceanimonas sp. GK1]
Length = 142
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/132 (31%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
LG D GL G+A+ + RPL LK G Q+ ++ + + ++GLP +
Sbjct: 6 LGFDYGLKSIGVAVGQELTASARPLLALKANDGVPNWEQIEKLLKEWQPALLVVGLPLNM 65
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E S + R A RL R G V L DE T+ +A R+ G K+ + D
Sbjct: 66 DGTEQDISRRARKFANRLHGRF---GLAVELQDERLTTTDARARLFEAGGYKALGKDAVD 122
Query: 183 AYAAVILLERYF 194
A +A ++LE +
Sbjct: 123 AVSAQLILESWM 134
>gi|339320876|ref|YP_004683398.1| putative Holliday junction resolvase [Mycoplasma bovis Hubei-1]
gi|392429950|ref|YP_006470995.1| holliday junction resolvase [Mycoplasma bovis HB0801]
gi|338227001|gb|AEI90063.1| putative Holliday junction resolvase [Mycoplasma bovis Hubei-1]
gi|392051359|gb|AFM51734.1| putative holliday junction resolvase [Mycoplasma bovis HB0801]
Length = 146
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-------ETDEFIIGL 118
L DLG G A+S + + +R ++ + ++ +E D F++G
Sbjct: 4 LSFDLGTKTCGFAISDILEISANALETIRFDESDFNVVITKVKEIIKMYQNSIDAFVLGY 63
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P +GS++ ++ V + A LA G +YL+DE+ ++ +A + + LS +
Sbjct: 64 PLRSNGSKSERTVMVDNFATLLANEFP--GINIYLVDEYGSTIKAQRILKDAKLSNKKTK 121
Query: 179 TKTDAYAAVILLERYFSMSGQGTEI 203
+K D +AVI+L + GQ E+
Sbjct: 122 SKKDTVSAVIILNDFLQYGGQKYEL 146
>gi|16272260|ref|NP_438472.1| Holliday junction resolvase-like protein [Haemophilus influenzae Rd
KW20]
gi|68248907|ref|YP_248019.1| Holliday junction resolvase-like protein [Haemophilus influenzae
86-028NP]
gi|145628645|ref|ZP_01784445.1| Holliday junction resolvase-like protein [Haemophilus influenzae
22.1-21]
gi|145634695|ref|ZP_01790404.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittAA]
gi|145636560|ref|ZP_01792228.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittHH]
gi|145638789|ref|ZP_01794398.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittII]
gi|145640245|ref|ZP_01795829.1| Holliday junction resolvase-like protein [Haemophilus influenzae
R3021]
gi|148827459|ref|YP_001292212.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittGG]
gi|260581226|ref|ZP_05849045.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|319775826|ref|YP_004138314.1| holliday junction resolvase [Haemophilus influenzae F3047]
gi|319896638|ref|YP_004134831.1| holliday junction resolvase [Haemophilus influenzae F3031]
gi|329123670|ref|ZP_08252230.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius
ATCC 11116]
gi|378696496|ref|YP_005178454.1| Holliday junction resolvase [Haemophilus influenzae 10810]
gi|386265298|ref|YP_005828790.1| hypothetical protein R2846_0274 [Haemophilus influenzae R2846]
gi|1175215|sp|P43981.1|RUVX_HAEIN RecName: Full=Putative Holliday junction resolvase
gi|81336682|sp|Q4QNN8.1|RUVX_HAEI8 RecName: Full=Putative Holliday junction resolvase
gi|167012730|sp|A5UGC3.1|RUVX_HAEIG RecName: Full=Putative Holliday junction resolvase
gi|1573274|gb|AAC21970.1| conserved hypothetical protein [Haemophilus influenzae Rd KW20]
gi|68057106|gb|AAX87359.1| putative holliday junction resolvase [Haemophilus influenzae
86-028NP]
gi|144979115|gb|EDJ88801.1| Holliday junction resolvase-like protein [Haemophilus influenzae
22.1-21]
gi|145268240|gb|EDK08235.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittAA]
gi|145270385|gb|EDK10320.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittHH]
gi|145272384|gb|EDK12292.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittII]
gi|145274831|gb|EDK14693.1| Holliday junction resolvase-like protein [Haemophilus influenzae
22.4-21]
gi|148718701|gb|ABQ99828.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittGG]
gi|260092151|gb|EEW76095.1| conserved hypothetical protein [Haemophilus influenzae RdAW]
gi|301169015|emb|CBW28612.1| predicted Holliday junction resolvase [Haemophilus influenzae
10810]
gi|309750279|gb|ADO80263.1| Conserved hypothetical protein [Haemophilus influenzae R2866]
gi|309972534|gb|ADO95735.1| Conserved hypothetical protein [Haemophilus influenzae R2846]
gi|317432140|emb|CBY80491.1| putative holliday junction resolvase [Haemophilus influenzae F3031]
gi|317450417|emb|CBY86633.1| putative holliday junction resolvase [Haemophilus influenzae F3047]
gi|327469869|gb|EGF15334.1| crossover junction endodeoxyribonuclease [Haemophilus aegyptius
ATCC 11116]
Length = 139
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+G +G S TG A + L K + + +E +E + D I+GLP + D
Sbjct: 14 SIGCAIGQSITGTA-------QALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E + + R A RL R G V+L DE T+ +A + G K+ ++ K D
Sbjct: 67 GTEQDLTLRARKFANRLQGRF---GVNVHLQDERLTTTQARSEIFERGGFKALKKGKIDG 123
Query: 184 YAAVILLERYFSMS 197
+A ++LE +F +
Sbjct: 124 VSACLILESWFEYA 137
>gi|257068796|ref|YP_003155051.1| hypothetical protein Bfae_16350 [Brachybacterium faecium DSM 4810]
gi|256559614|gb|ACU85461.1| conserved hypothetical protein TIGR00250 [Brachybacterium faecium
DSM 4810]
Length = 181
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 67/136 (49%), Gaps = 6/136 (4%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPK 120
G LGVD+G R GLA S G P+ L+ RG + +++E A+ E ++GLP+
Sbjct: 17 GVRLGVDVGDVRVGLARSDLDGMIATPVETLE-RGSAV-ARVVEEARELEARVIMVGLPR 74
Query: 121 SWDGSETPQSNKVRSVAGRL--AVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
S +G+E + K R A L ++ + V ++DE T+ A + G +
Sbjct: 75 SLNGAEGAAAQKARDFAAELLTSLASGPTEIEVRMIDERLTTVTAHQALHRSGRKGRKHR 134
Query: 179 TKTDAYAAVILLERYF 194
+ D AAV++L++
Sbjct: 135 SVVDQVAAVMILQQAL 150
>gi|84496691|ref|ZP_00995545.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649]
gi|84383459|gb|EAP99340.1| hypothetical protein JNB_04190 [Janibacter sp. HTCC2649]
Length = 161
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 64/133 (48%), Gaps = 12/133 (9%)
Query: 68 VDLGLSRTGLALS--KGFCVRPLTVL-------KLRGEKLELQLLEIAQREETDEFIIGL 118
+D+G R G+A+S G P L + G+ + +++ ++ E I+GL
Sbjct: 1 MDVGTVRVGVAVSDPSGMLATPHATLTRIWPDAETPGDDI-AEIVALSAERAALEVIVGL 59
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P+S G E P + R A LA R A G R L+DE TS A + + G++ ++
Sbjct: 60 PRSLSGDEGPSAEAARKYAAELARRVAPVGVR--LVDERLTSVSAHRALRDSGVAGRRQR 117
Query: 179 TKTDAYAAVILLE 191
D AAV++L+
Sbjct: 118 AVVDQAAAVLILQ 130
>gi|424910172|ref|ZP_18333549.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. viciae USDA
2370]
gi|392846203|gb|EJA98725.1| RNAse H-fold protein YqgF [Rhizobium leguminosarum bv. viciae USDA
2370]
Length = 159
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 67/130 (51%), Gaps = 10/130 (7%)
Query: 67 GVDLGLSRTGLA---LSKGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
G+DLG GLA LS+ F P V+K L+ + L+ A++E+ FIIGLP +
Sbjct: 21 GLDLGTKTIGLAMSDLSRRFAT-PRPVIKRVKFTLDAEVLMAFAEKEKVAAFIIGLPMNM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKT 181
DGS P+ R+ + E+ ++ + R S A +R ++ M +S++ R +
Sbjct: 80 DGSAGPRVQATRAFVRTM----GEKTALPFVYWDERLSTVAAERALLEMDVSRAKRAERI 135
Query: 182 DAYAAVILLE 191
D+ AA +L+
Sbjct: 136 DSAAASFILQ 145
>gi|394989876|ref|ZP_10382709.1| hypothetical protein SCD_02302 [Sulfuricella denitrificans skB26]
gi|393791376|dbj|GAB72348.1| hypothetical protein SCD_02302 [Sulfuricella denitrificans skB26]
Length = 164
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/158 (28%), Positives = 68/158 (43%), Gaps = 8/158 (5%)
Query: 41 LSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSK---GFCVRPLTVLKLRGEK 97
LSS EE LP + G LG D G+ R G+A+ + G PLT +
Sbjct: 8 LSSGEEILPPHPSPFTPHPPQRGTVLGFDFGIKRIGVAVGELELGLA-HPLTTVLGESND 66
Query: 98 LELQLLEIAQRE-ETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDE 156
+E +E + ++GLP DG E S + R A +L R G +V L+DE
Sbjct: 67 QRFGAIEALLKEWQPALVVVGLPAHADGEEHEMSARCRRFAHQLEGRF---GLKVALVDE 123
Query: 157 HRTSAEAVDRMINMGLSKSARQTKTDAYAAVILLERYF 194
+S A + + G+ ++ D AA +L+ Y
Sbjct: 124 RHSSTAASEDLNEAGVRGRKQKAVLDQVAAQRILQSYL 161
>gi|375011863|ref|YP_004988851.1| RNAse H-fold protein YqgF [Owenweeksia hongkongensis DSM 17368]
gi|359347787|gb|AEV32206.1| RNAse H-fold protein YqgF [Owenweeksia hongkongensis DSM 17368]
Length = 138
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 64/131 (48%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
+ +D+G RTG+A + + + KL L ++ + + +IG PK+ DG
Sbjct: 5 VALDIGGKRTGIAETDPMQIIATPKDTVETSKLLDYLRQLFATDSYETIVIGDPKNLDGG 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
++ S +VR + +L + +V L DE +S A+ MI+ G+ K R+ K D
Sbjct: 65 DSDNSERVRKLTTKL--QNVFPKMKVVLQDERFSSKMAMQSMIDSGMKKMKRREKGEIDK 122
Query: 184 YAAVILLERYF 194
+A I+L+ Y
Sbjct: 123 VSAAIILQSYM 133
>gi|302533384|ref|ZP_07285726.1| Holliday junction resolvase YqgF [Streptomyces sp. C]
gi|302442279|gb|EFL14095.1| Holliday junction resolvase YqgF [Streptomyces sp. C]
Length = 158
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/135 (28%), Positives = 64/135 (47%), Gaps = 5/135 (3%)
Query: 60 WRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFII 116
R G L +D+G +R G+A V V + G + +L ++ + E E ++
Sbjct: 5 LRRGRRLAIDVGDARIGVASCDPDGVLATPVETVPGRDIPFAHRRLRQLVEEYEPLEVVV 64
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR+ A LA + V L+DE T+ A + G +
Sbjct: 65 GLPRSLSGREGPAAAKVRAFANELA--KGIKPVTVRLVDERMTTVTAAQGLRASGRNAKK 122
Query: 177 RQTKTDAYAAVILLE 191
++ D AAV++L+
Sbjct: 123 GRSVIDQAAAVVILQ 137
>gi|26554307|ref|NP_758241.1| hypothetical protein MYPE8530 [Mycoplasma penetrans HF-2]
gi|32130033|sp|Q8EUR7.1|RUVX_MYCPE RecName: Full=Putative Holliday junction resolvase
gi|26454316|dbj|BAC44645.1| conserved hypothetical protein [Mycoplasma penetrans HF-2]
Length = 142
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/131 (21%), Positives = 58/131 (44%), Gaps = 1/131 (0%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSWDG 124
L +D G G A++ L ++ +L+ + +LEI + E E +IG PK+ +
Sbjct: 9 LAIDFGTKIIGTAINDINLNLCLPYCEITNNELKFKKILEIVEEENIKEIVIGFPKTQNS 68
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
+ + + +L+ + + DE ++ + + ++N + S + D
Sbjct: 69 YVSERHQLIIDFKNQLSELLKNKNIEICFFDESYSTKSSKESLMNFNVKTSKLKKNKDMI 128
Query: 185 AAVILLERYFS 195
AA I+LE Y +
Sbjct: 129 AASIILENYLA 139
>gi|418004478|ref|ZP_12644501.1| putative Holliday junction resolvase [Lactobacillus casei UW1]
gi|410549787|gb|EKQ23941.1| putative Holliday junction resolvase [Lactobacillus casei UW1]
Length = 144
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 70/139 (50%), Gaps = 9/139 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + L ++++ +K + +L E+ ++ E F++GLPK
Sbjct: 4 MGLDVGSRTVGVAVSDLLGWTAQGLEIIRINEDKEQFGIARLKELVKQYEVTAFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ + S P++ K ++ L G V +DE T+ EA +I + RQ +
Sbjct: 64 NMNNSIGPRAEKSQAYGELLKTTF---GLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120
Query: 181 T-DAYAAVILLERYFSMSG 198
D AA ++L+ Y G
Sbjct: 121 VIDKLAAQMILQNYLDAKG 139
>gi|288939960|ref|YP_003442200.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180]
gi|288895332|gb|ADC61168.1| Holliday junction resolvase YqgF [Allochromatium vinosum DSM 180]
Length = 135
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 45/139 (32%), Positives = 69/139 (49%), Gaps = 19/139 (13%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
LG D G + G+A+ + PLT L+ +GEK + +E RE + ++GLP
Sbjct: 4 LGFDFGPRKIGVAVGQTITRSATPLTTLRSQGEKPDWTRIEALIREWQPSALVVGLPFQM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
D +E S +V A +L R +R V+L+DE TS EA + L++ R+T
Sbjct: 64 DDTEVAWSPRVHRFARQLEGR-----YRLPVHLVDERLTSREA-----HRQLAERDRRTP 113
Query: 181 T----DAYAAVILLERYFS 195
T DA AA ++LE +
Sbjct: 114 TLEAVDALAAALILETWLC 132
>gi|319957356|ref|YP_004168619.1| holliday junction resolvase yqgf [Nitratifractor salsuginis DSM
16511]
gi|319419760|gb|ADV46870.1| Holliday junction resolvase YqgF [Nitratifractor salsuginis DSM
16511]
Length = 130
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/133 (32%), Positives = 64/133 (48%), Gaps = 8/133 (6%)
Query: 67 GVDLGLSRTGLALS-KGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWDG 124
VD+GL R G+A+S G V P ++ RG K + L RE + D ++GLP+
Sbjct: 4 AVDVGLKRIGVAISPDGRIVLPQRAIERRGRKQAAKELSDFLREWKVDLLVVGLPRG-GS 62
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
SE ++R L + V+ DE +S EA +RM G + R + D+
Sbjct: 63 SEEEMERRIRHFVSLLELPPQ---MEVHYQDEAGSSEEAKERM--QGAIRQKRDGRIDSL 117
Query: 185 AAVILLERYFSMS 197
AA I+LER+ S
Sbjct: 118 AAQIILERWLERS 130
>gi|313678596|ref|YP_004056336.1| hypothetical protein MBOVPG45_0505 [Mycoplasma bovis PG45]
gi|312950363|gb|ADR24958.1| conserved hypothetical protein TIGR00250 [Mycoplasma bovis PG45]
Length = 146
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/145 (24%), Positives = 68/145 (46%), Gaps = 9/145 (6%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-------ETDEFIIGL 118
L DLG G A+S + + +R ++ + ++ +E D F++G
Sbjct: 4 LSFDLGTKTCGFAISDILEISANALETIRFDENDFNVVITKVKEIIKMYQNSIDAFVLGY 63
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P +GS++ ++ V + A LA G +YL+DE+ ++ +A + + LS +
Sbjct: 64 PLRSNGSKSERTVMVDNFATLLANEFP--GINIYLVDEYGSTIKAQRILKDAKLSNKKTK 121
Query: 179 TKTDAYAAVILLERYFSMSGQGTEI 203
+K D +AVI+L + GQ E+
Sbjct: 122 SKKDTVSAVIILNDFLQYGGQKYEL 146
>gi|260102889|ref|ZP_05753126.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|417016121|ref|ZP_11946979.1| Holliday junction resolvase-like protein [Lactobacillus helveticus
MTCC 5463]
gi|260083302|gb|EEW67422.1| conserved hypothetical protein [Lactobacillus helveticus DSM 20075]
gi|328462755|gb|EGF34644.1| Holliday junction resolvase-like protein [Lactobacillus helveticus
MTCC 5463]
Length = 142
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 10/138 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G + L +K+ K L ++ ++ E D F++GLPK
Sbjct: 4 LGLDIGSKTVGVAVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI-NMGL-SKSARQ 178
+ DG+ + ++ RL + G V+ DE T+ E+ ++ + G+ + R+
Sbjct: 64 NMDGTSGASVTRSKAYGKRLEEKF---GLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120
Query: 179 TKTDAYAAVILLERYFSM 196
D AAV++L+ Y +
Sbjct: 121 QVIDQMAAVLILQNYLDL 138
>gi|289209567|ref|YP_003461633.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. K90mix]
gi|288945198|gb|ADC72897.1| Holliday junction resolvase YqgF [Thioalkalivibrio sp. K90mix]
Length = 130
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 56/131 (42%), Gaps = 10/131 (7%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
L D G R G+A+ + R L L +L + + + F++G P D
Sbjct: 4 LAFDYGRRRIGIAVGEELTGAARGLRTLNTDSPELWPVIDRLVSEWAPEGFVVGWPTQAD 63
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G TP + ++R+ L R + VY DEH TS A +R + DA
Sbjct: 64 GKPTPLAKRIRAFGAALEARYNQ---PVYWYDEHLTSHLARERS-----GRGRHDPGLDA 115
Query: 184 YAAVILLERYF 194
+AA ++LE +F
Sbjct: 116 HAAAVILEGWF 126
>gi|390951551|ref|YP_006415310.1| RNAse H-fold protein YqgF [Thiocystis violascens DSM 198]
gi|390428120|gb|AFL75185.1| RNAse H-fold protein YqgF [Thiocystis violascens DSM 198]
Length = 137
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
LG D G + G+A+ + PL L+ R E+ + +E R+ ++GLP +
Sbjct: 5 LGFDFGTRKIGVAVGQLVTRSASPLITLRHRNEQPDWPQIETLIRDWRPSALVVGLPYNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D +E S +V A +L R G V+L+DE TS EA +++ + D
Sbjct: 65 DDTEVDWSQRVHRFARQLQGRY---GLAVHLIDERLTSIEARRQIMERPGHAPPTREAVD 121
Query: 183 AYAAVILLERYFS 195
A AA ++LE +
Sbjct: 122 ALAAALILETWLC 134
>gi|448243884|ref|YP_007407937.1| putative Holliday junction resolvase [Serratia marcescens WW4]
gi|445214248|gb|AGE19918.1| putative Holliday junction resolvase [Serratia marcescens WW4]
Length = 140
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G G A+ + R L K + G L++ ++ + + D ++GLP +
Sbjct: 7 IAFDFGTKSIGAAVGQELTGSARALPAFKAQDGSPDWLKIEKLLKEWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P + + R A RL R G ++ L DE ++ EA + + G ++ + D
Sbjct: 67 DGTEQPVTAQARKFANRLHGRF---GIQIDLHDERLSTVEARANLFDRGGFRALDKGSVD 123
Query: 183 AYAAVILLERYF 194
+ +AV++LE +F
Sbjct: 124 SASAVVILESWF 135
>gi|386387592|ref|ZP_10072584.1| Holliday junction resolvase-like protein [Streptomyces tsukubaensis
NRRL18488]
gi|385664946|gb|EIF88697.1| Holliday junction resolvase-like protein [Streptomyces tsukubaensis
NRRL18488]
Length = 154
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/135 (29%), Positives = 65/135 (48%), Gaps = 5/135 (3%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R +L + + E E ++
Sbjct: 1 MRRGRRLAIDVGDARIGVASCDPDGVLATPVETVPGRDVPAAHRRLRALVEEYEPIEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S +G E P + KVR+ A LA A V L+DE T+ A + G++
Sbjct: 61 GLPRSLNGQEGPAAGKVRTFARELARGIAP--VPVRLVDERMTTVTAGQGLRAAGVTAKK 118
Query: 177 RQTKTDAYAAVILLE 191
++ D AAV++L+
Sbjct: 119 GRSFIDQAAAVVILQ 133
>gi|410099841|ref|ZP_11294809.1| RNAse H-fold protein YqgF [Parabacteroides goldsteinii CL02T12C30]
gi|409217674|gb|EKN10649.1| RNAse H-fold protein YqgF [Parabacteroides goldsteinii CL02T12C30]
Length = 146
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/139 (29%), Positives = 59/139 (42%), Gaps = 4/139 (2%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIG 117
SL G L +D G RTGLA + + + + +L L +E D F++G
Sbjct: 3 SLQPMGRILAIDYGRKRTGLAATDNLQMIANGLTTVPSGELVSWLSAYVAKEPVDLFVVG 62
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
LPK + + V + L + Y DE TS A M++ GL K R
Sbjct: 63 LPKQMNNEPSENMKYVEAFVTHLKRTIPDIPVEYY--DERFTSVLAHKAMLDGGLKKKKR 120
Query: 178 QTK--TDAYAAVILLERYF 194
Q K D +AVI+L+ Y
Sbjct: 121 QDKGLVDEISAVIILQSYL 139
>gi|406038428|ref|ZP_11045783.1| Holliday junction resolvase-like protein [Acinetobacter ursingii
DSM 16037 = CIP 107286]
Length = 147
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G QLL+I + + + F++GLP +
Sbjct: 11 MAFDFGTQKMGMAVGQSTIESANPLALFPMKDGIPDWNQLLKIVKEWQPNLFLVGLPLNM 70
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + W V DE T+ EA D + ++ D
Sbjct: 71 DDSESELSTRARKFARRLRHQTNIETWMV---DERLTTREARDELDAYHDQGRGKRLSAD 127
Query: 183 AYAAVILLERYF 194
+ AA +L++ ++
Sbjct: 128 SLAAALLIQSWY 139
>gi|300362249|ref|ZP_07058425.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
JV-V03]
gi|300353240|gb|EFJ69112.1| crossover junction endodeoxyribonuclease [Lactobacillus gasseri
JV-V03]
Length = 143
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 70/140 (50%), Gaps = 12/140 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G + L +K+ K Q+ +I ++ + + F++GLPK
Sbjct: 4 LGLDVGSKTVGVAISDPLGITAQELETIKIDESKFSFGMRQIRKIVRKYDVEGFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGL-SKSAR 177
+ DGS + + RL + V+ +DE T+ +A DR++ G+ + R
Sbjct: 64 NMDGSSGHSVERSKQYGERLKEKF---DLPVHYMDERLTTVQA-DRILVQEAGVHDRVER 119
Query: 178 QTKTDAYAAVILLERYFSMS 197
+ D AAV++L+ Y +
Sbjct: 120 KKVIDQMAAVLILQSYLEAT 139
>gi|159900150|ref|YP_001546397.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus DSM
785]
gi|159893189|gb|ABX06269.1| Holliday junction resolvase YqgF [Herpetosiphon aurantiacus DSM
785]
Length = 158
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 64/137 (46%), Gaps = 8/137 (5%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCV----RPLTVLKLRGEKLELQLLEIAQREETDEFIIGL 118
G + +D+G R G+A+ + +P T+ +K QLL + E E +IGL
Sbjct: 8 GRIIALDVGNKRIGVAMCDPDRIIASGQP-TLPAQPTDKAYAQLLHMITEHEVVEVVIGL 66
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
P + G Q+ V++ + L R + L DE TS EA + MG+ KS +
Sbjct: 67 PLTLRGEVGAQAKAVQAFSRGLEKRTK---IPITLYDERFTSVEAERSLEAMGIKKSKHR 123
Query: 179 TKTDAYAAVILLERYFS 195
D AA+++L+ Y S
Sbjct: 124 DHVDELAAILILQDYMS 140
>gi|407473797|ref|YP_006788197.1| holliday junction resolvase [Clostridium acidurici 9a]
gi|407050305|gb|AFS78350.1| holliday junction resolvase [Clostridium acidurici 9a]
Length = 137
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
+G+D+G G+A+S G + +T ++ +G K +++ L+ I + ++ +IGLPK+
Sbjct: 5 MGLDVGDKTIGVAVSDPLGITSQGVTTIRRKGIKSDIEELKSIVEEYCIEKVVIGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+ + PQ KV + + + + L DE T+ A +I+ +S+ R+ D
Sbjct: 65 NNTIGPQGEKVLKFSEKFKEKFE---LEIILQDERLTTVSAERVLIDADVSRKKRKDVID 121
Query: 183 AYAAVILLERYFSMS 197
AA +L+ Y S
Sbjct: 122 KVAATYILQSYLDRS 136
>gi|420241702|ref|ZP_14745811.1| RNAse H-fold protein YqgF [Rhizobium sp. CF080]
gi|398069889|gb|EJL61217.1| RNAse H-fold protein YqgF [Rhizobium sp. CF080]
Length = 162
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/139 (27%), Positives = 70/139 (50%), Gaps = 8/139 (5%)
Query: 57 DSLWRGGFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDE 113
++L G G+DLG GLA+S + F + +++ K LL A++E+
Sbjct: 11 EALQPGQAIAGLDLGTKTIGLAMSDLGRRFASPRPVIKRVKFTKDAEVLLAFAEKEKVAG 70
Query: 114 FIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGL 172
F+IGLP + DGS P+ R+ + +E+ ++ + R S A +R ++ M +
Sbjct: 71 FVIGLPTNMDGSAGPRVQATRAFVRSM----SEKTALPFVYWDERLSTVAAERALLEMDV 126
Query: 173 SKSARQTKTDAYAAVILLE 191
S++ R + D+ AA +L+
Sbjct: 127 SRAKRAERIDSAAASFILQ 145
>gi|118597217|sp|Q1QL26.2|RUVX_NITHX RecName: Full=Putative Holliday junction resolvase
Length = 163
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 18/138 (13%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLE--------LQLLEIAQREETDEF 114
G +G+DLG G+A+S P L E L+ +LL IA F
Sbjct: 19 GALVGLDLGTKTIGVAVSD-----PDRRLATGVETLQRKTFTADAARLLAIAGERNAAGF 73
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLS 173
++GLP + DGSE P++ R+ A LA R + + L DE R S AV+R +I M +S
Sbjct: 74 VLGLPINMDGSEGPRAQSTRAFARNLA-RLTDLA--IGLWDE-RLSTVAVERELIGMDMS 129
Query: 174 KSARQTKTDAYAAVILLE 191
++ R D +AA+ +L+
Sbjct: 130 RAKRAKVIDEHAAIFILQ 147
>gi|157803931|ref|YP_001492480.1| Holliday junction resolvase-like protein [Rickettsia canadensis
str. McKiel]
gi|167012756|sp|A8EZB2.1|RUVX_RICCK RecName: Full=Putative Holliday junction resolvase
gi|157785194|gb|ABV73695.1| Holliday junction resolvase-like protein [Rickettsia canadensis
str. McKiel]
Length = 154
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 59/129 (45%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+ +D G + G+A+S G PL + + + + +L I + + +IGLP
Sbjct: 20 IAIDYGSKKLGIAMSNGERSIAMPLNTITVVNKTAVINSVLSIIAKYKICGVVIGLPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G T Q+N V A LA +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGVVTQQTNIVMKFAEELA---KYTNLPIYLQDERLTTKAANNFLKSFGVKRKDRNNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|295695754|ref|YP_003588992.1| Holliday junction resolvase YqgF [Kyrpidia tusciae DSM 2912]
gi|295411356|gb|ADG05848.1| Holliday junction resolvase YqgF [Kyrpidia tusciae DSM 2912]
Length = 157
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 63/132 (47%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
LG+D+G R G+A+S G + L VL + E+ L +E + + ++GLP++
Sbjct: 5 LGLDVGRVRIGVAVSDPLGLVAQGLEVLAVDDEESALARIEGLIAEWGVERVVVGLPRNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D S Q A +L R V L DE T+ A +I+ GL ++ R+ D
Sbjct: 65 DASLGAQGRYTEEFAEKLRHRVR---VPVDLWDERLTTVVAEKTLIDAGLRRARRKKVVD 121
Query: 183 AYAAVILLERYF 194
AA +LL+ Y
Sbjct: 122 QVAATVLLQSYL 133
>gi|262038171|ref|ZP_06011568.1| putative Holliday junction resolvase [Leptotrichia goodfellowii
F0264]
gi|261747819|gb|EEY35261.1| putative Holliday junction resolvase [Leptotrichia goodfellowii
F0264]
Length = 138
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 39/132 (29%), Positives = 61/132 (46%), Gaps = 5/132 (3%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
+G+D+G R G+A S G L V+ ++ EI E T + + GLPKS D
Sbjct: 5 IGLDIGDVRIGVAKSDPLGILATGLEVIDRNTVNPVQRIKEILSDEGTKKIVAGLPKSLD 64
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-TD 182
G++ Q+ KV L + + V ++DE T+ EA + N + K D
Sbjct: 65 GTKKRQAEKVEEFVAEL--KESIPDIEVIMVDERYTTTEAEHYLKNYSKKNGKERRKVVD 122
Query: 183 AYAAVILLERYF 194
AA I+L++Y
Sbjct: 123 MVAASIILQKYL 134
>gi|199598089|ref|ZP_03211512.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
HN001]
gi|258507765|ref|YP_003170516.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
GG]
gi|385827467|ref|YP_005865239.1| holliday junction resolvase-like protein [Lactobacillus rhamnosus
GG]
gi|418072094|ref|ZP_12709367.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
R0011]
gi|423079638|ref|ZP_17068308.1| RNAse H domain protein, YqgF family [Lactobacillus rhamnosus ATCC
21052]
gi|199591015|gb|EDY99098.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
HN001]
gi|257147692|emb|CAR86665.1| Holliday junction resolvase [Lactobacillus rhamnosus GG]
gi|259649112|dbj|BAI41274.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
GG]
gi|357538386|gb|EHJ22408.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
R0011]
gi|357546166|gb|EHJ28111.1| RNAse H domain protein, YqgF family [Lactobacillus rhamnosus ATCC
21052]
Length = 144
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + L ++++ +K + +L E+ + E F++GLPK
Sbjct: 4 MGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ + S P++ K ++ L G V +DE T+ EA +I + RQ +
Sbjct: 64 NMNNSIGPRAEKSQAYGDLL---KETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120
Query: 181 T-DAYAAVILLERYFSMSG 198
D AA ++L+ Y G
Sbjct: 121 VIDKLAAQMILQNYLDAKG 139
>gi|92117802|ref|YP_577531.1| Holliday junction resolvase-like protein [Nitrobacter hamburgensis
X14]
gi|91800696|gb|ABE63071.1| Holliday junction resolvase YqgF [Nitrobacter hamburgensis X14]
Length = 168
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 46/138 (33%), Positives = 69/138 (50%), Gaps = 18/138 (13%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLE--------LQLLEIAQREETDEF 114
G +G+DLG G+A+S P L E L+ +LL IA F
Sbjct: 24 GALVGLDLGTKTIGVAVSD-----PDRRLATGVETLQRKTFTADAARLLAIAGERNAAGF 78
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLS 173
++GLP + DGSE P++ R+ A LA R + + L DE R S AV+R +I M +S
Sbjct: 79 VLGLPINMDGSEGPRAQSTRAFARNLA-RLTDLA--IGLWDE-RLSTVAVERELIGMDMS 134
Query: 174 KSARQTKTDAYAAVILLE 191
++ R D +AA+ +L+
Sbjct: 135 RAKRAKVIDEHAAIFILQ 152
>gi|414167198|ref|ZP_11423427.1| RNAse H-fold protein YqgF [Afipia clevelandensis ATCC 49720]
gi|410891015|gb|EKS38813.1| RNAse H-fold protein YqgF [Afipia clevelandensis ATCC 49720]
Length = 163
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 63 GFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLP 119
G +G+DLG G+A+S + T+ + +LL ++ + FI+GLP
Sbjct: 19 GALIGLDLGTKTIGVAVSDPDRKLATGIETIQRKTFTADAARLLALSGERQVVGFILGLP 78
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQ 178
+ DGSE P++ R+ A A R E + L DE R S AV+R +I M +S++ R
Sbjct: 79 INMDGSEGPRAQSTRAFARNFA-RQTELA--IGLWDE-RLSTVAVERELIGMDMSRAKRA 134
Query: 179 TKTDAYAAVILLE 191
D +AA+ +L+
Sbjct: 135 KVIDEHAAIFILQ 147
>gi|258538956|ref|YP_003173455.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
Lc 705]
gi|417065132|ref|ZP_11949792.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
MTCC 5462]
gi|421770330|ref|ZP_16207028.1| Putative Holliday junction resolvase [Lactobacillus rhamnosus
LRHMDP2]
gi|421773386|ref|ZP_16210032.1| Putative Holliday junction resolvase [Lactobacillus rhamnosus
LRHMDP3]
gi|257150632|emb|CAR89604.1| Holliday junction resolvase [Lactobacillus rhamnosus Lc 705]
gi|328469825|gb|EGF40739.1| Holliday junction resolvase-like protein [Lactobacillus rhamnosus
MTCC 5462]
gi|411182112|gb|EKS49267.1| Putative Holliday junction resolvase [Lactobacillus rhamnosus
LRHMDP3]
gi|411182356|gb|EKS49506.1| Putative Holliday junction resolvase [Lactobacillus rhamnosus
LRHMDP2]
Length = 144
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + L ++++ +K + +L E+ + E F++GLPK
Sbjct: 4 MGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLKRLKELVTQYEVTAFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ + S P++ K ++ L G V +DE T+ EA +I + RQ +
Sbjct: 64 NMNNSIGPRAEKSQAYGDLL---KETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120
Query: 181 T-DAYAAVILLERYFSMSG 198
D AA ++L+ Y G
Sbjct: 121 VIDKLAAQMILQNYLDAKG 139
>gi|89895164|ref|YP_518651.1| Holliday junction resolvase-like protein [Desulfitobacterium
hafniense Y51]
gi|219669581|ref|YP_002460016.1| Holliday junction resolvase-like protein [Desulfitobacterium
hafniense DCB-2]
gi|423073474|ref|ZP_17062213.1| RNAse H domain protein, YqgF family [Desulfitobacterium hafniense
DP7]
gi|146325570|sp|Q24UT5.1|RUVX_DESHY RecName: Full=Putative Holliday junction resolvase
gi|254767513|sp|B8FQB9.1|RUVX_DESHD RecName: Full=Putative Holliday junction resolvase
gi|89334612|dbj|BAE84207.1| hypothetical protein [Desulfitobacterium hafniense Y51]
gi|219539841|gb|ACL21580.1| Holliday junction resolvase YqgF [Desulfitobacterium hafniense
DCB-2]
gi|361855780|gb|EHL07738.1| RNAse H domain protein, YqgF family [Desulfitobacterium hafniense
DP7]
Length = 142
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 62/130 (47%), Gaps = 4/130 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSWDG 124
+G+D G G+A+S + V +R EL+ L+ + Q E D ++G PK+ +G
Sbjct: 4 MGLDFGERTIGVAVSDAMLLTAQGVKTIRRSPKELEELKTMLQDYEVDHIVLGYPKNMNG 63
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAY 184
+ P++ A + E G V L DE ++ A ++ +S++ R+ D
Sbjct: 64 TLGPRAQATEEFA---QILKEEFGLPVTLWDERLSTMGAQRSLLEADVSRAKRKQVIDKM 120
Query: 185 AAVILLERYF 194
AAV +L+ Y
Sbjct: 121 AAVFILQGYL 130
>gi|414162273|ref|ZP_11418520.1| RNAse H-fold protein YqgF [Afipia felis ATCC 53690]
gi|410880053|gb|EKS27893.1| RNAse H-fold protein YqgF [Afipia felis ATCC 53690]
Length = 167
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 63 GFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLP 119
G +G+DLG G+A+S + T+ + K +LL I+ F++GLP
Sbjct: 24 GALIGLDLGTKTIGVAVSDPDRRLATGVTTIQRRNFTKDAAELLRISAERACAGFVLGLP 83
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQ 178
+ DGSE P++ R+ A A + L DE R S AV+R +I++ +S++ R
Sbjct: 84 INMDGSEGPRAQSTRAFARNF---AKLTDLAIGLWDE-RLSTAAVERELISIDVSRARRA 139
Query: 179 TKTDAYAAVILLE 191
D +AA+ +L+
Sbjct: 140 EVIDEHAAIFILQ 152
>gi|430375967|ref|ZP_19430370.1| Holliday junction resolvase YqgF [Moraxella macacae 0408225]
gi|429541198|gb|ELA09226.1| Holliday junction resolvase YqgF [Moraxella macacae 0408225]
Length = 158
Score = 48.1 bits (113), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 68/140 (48%), Gaps = 7/140 (5%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
+G+D G ++ G++L RPL ++ K + Q LL + ++ + ++GLP +
Sbjct: 17 MGLDFGAAKMGISLGNTLTRNARPLMQFAMQNGKPDWQALLSLIKQWQATTIVVGLPLNM 76
Query: 123 DGSETPQSNKVRSVAGRLA--VRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
DG+ +P + + A RL ++ V + DE +S EA + GL K+ +
Sbjct: 77 DGTISPMGLRAKKFARRLKHELQTCHYQCDVVVFDERLSSREAKNLAWEYGLIKT-KNDP 135
Query: 181 TDAYAAVILLERYFSMSGQG 200
D+ A+ ILL + SG G
Sbjct: 136 IDSIASAILLGSWLR-SGDG 154
>gi|441504388|ref|ZP_20986382.1| Putative Holliday junction resolvase YggF [Photobacterium sp. AK15]
gi|441427855|gb|ELR65323.1| Putative Holliday junction resolvase YggF [Photobacterium sp. AK15]
Length = 142
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 43/138 (31%), Positives = 67/138 (48%), Gaps = 18/138 (13%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPK 120
G S+GV +G TG A PL LK + + +E I + + D ++GLP
Sbjct: 13 GTKSIGVAIGQEMTGTA-------NPLAALKAKDGIPSWEAIEKILKEWQPDLIVVGLPL 65
Query: 121 SWDGSE----TPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
DG E TP++ K A RL R G++V L DE ++AEA + G ++
Sbjct: 66 DMDGCELEAITPRAKKF---ANRLHGRF---GYQVELHDERLSTAEARAELFERGGYRNL 119
Query: 177 RQTKTDAYAAVILLERYF 194
+ D+ +AV++LE +F
Sbjct: 120 SKGNIDSQSAVVILESWF 137
>gi|119383262|ref|YP_914318.1| Holliday junction resolvase-like protein [Paracoccus denitrificans
PD1222]
gi|167012745|sp|A1AZC8.1|RUVX_PARDP RecName: Full=Putative Holliday junction resolvase
gi|119373029|gb|ABL68622.1| Holliday junction resolvase YqgF [Paracoccus denitrificans PD1222]
Length = 158
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 46/84 (54%), Gaps = 3/84 (3%)
Query: 57 DSLWRGGFSLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQ-LLEIAQREETDE 113
++L R G G+DLG G+A+S G PLTV++ + Q LL+I Q
Sbjct: 11 EALPRTGAVAGLDLGTKTIGVAVSDGLRGVASPLTVIRRTKFTADAQALLKIVQDRALVG 70
Query: 114 FIIGLPKSWDGSETPQSNKVRSVA 137
++GLP++ DGSE P++ R+ A
Sbjct: 71 LVLGLPRNMDGSEGPRAQSTRAFA 94
>gi|146341407|ref|YP_001206455.1| Holliday junction resolvase-like protein [Bradyrhizobium sp. ORS
278]
gi|167012698|sp|A4YWF9.1|RUVX_BRASO RecName: Full=Putative Holliday junction resolvase
gi|146194213|emb|CAL78235.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS 278]
Length = 161
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 63 GFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLP 119
G +G+DLG G+A+S + T+ + + +LL I + F++GLP
Sbjct: 19 GALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLAICAERKVVGFVLGLP 78
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQ 178
+ DGSE P++ R+ A L A + L DE R S AV+R +I M +S++ R
Sbjct: 79 INMDGSEGPRAQSTRAFARNL---AGLTDLPIGLWDE-RLSTAAVERELIGMDVSRAKRA 134
Query: 179 TKTDAYAAVILLE 191
D +AA+ +L+
Sbjct: 135 EVIDTHAAIFILQ 147
>gi|299144217|ref|ZP_07037297.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
386 str. F0131]
gi|298518702|gb|EFI42441.1| putative Holliday junction resolvase [Peptoniphilus sp. oral taxon
386 str. F0131]
Length = 140
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
LG+D+G G+A+S G +PL +K K + + + + + ++GLPK+
Sbjct: 9 LGLDIGDKWIGVAVSDLLGITAQPLVTIKRESNKQAYEDIYNLIKENNIAKVVVGLPKNM 68
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+ + PQS KV + +L + G + +DE T+ A +I + + R+ D
Sbjct: 69 NNTLGPQSEKVLKFSEKL---KNKYGVEIIYIDERMTTISANRILIEGEVRRENRKQYVD 125
Query: 183 AYAAVILLERYF 194
AA +L+ Y
Sbjct: 126 KIAATYILQTYL 137
>gi|85716409|ref|ZP_01047381.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A]
gi|85696766|gb|EAQ34652.1| Holliday junction resolvase YqgF [Nitrobacter sp. Nb-311A]
Length = 166
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKL---ELQLLEIAQREETDEFIIGLP 119
G +G+DLG G+A+S V +R + +LL IA FI+GLP
Sbjct: 19 GALVGLDLGTRTIGVAVSDPDRRLATGVETIRRKAFTADAARLLAIAGERHAKGFILGLP 78
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQ 178
+ DGSE P++ R+ A LA R + + L DE R S AV+R +I + +S++ R
Sbjct: 79 INMDGSEGPRAQSTRAFARNLA-RLTDLA--IGLWDE-RLSTAAVERELIGLDMSRARRA 134
Query: 179 TKTDAYAAVILLE 191
D +AA+ +L+
Sbjct: 135 RVIDEHAAIFILQ 147
>gi|359411307|ref|ZP_09203772.1| Holliday junction resolvase [Clostridium sp. DL-VIII]
gi|357170191|gb|EHI98365.1| Holliday junction resolvase [Clostridium sp. DL-VIII]
Length = 137
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+D+G G+A+S GF + LT ++ ++ ++ ++ + + + ++GLPK+
Sbjct: 4 IGLDVGSKTIGVAVSDPLGFTAQGLTTIRRTNKEQDIKEIKKFCDEYKAEAIVVGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P S ++ G+ E G RV DE T+ A M+ LS++ R+ D
Sbjct: 64 NGTIGP-SGEITMAFGKTV--EEELGIRVEFWDERLTTVAAHKAMLEADLSRNKRKKIVD 120
Query: 183 AYAAVILLERYF 194
A+ +L+ Y
Sbjct: 121 KVASTYILQGYL 132
>gi|367473869|ref|ZP_09473411.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS 285]
gi|365273781|emb|CCD85879.1| putative Holliday junction resolvase [Bradyrhizobium sp. ORS 285]
Length = 161
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 63 GFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLP 119
G +G+DLG G+A+S + T+ + + +LL I + F++GLP
Sbjct: 19 GALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLAICAERKVVGFVLGLP 78
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQ 178
+ DGSE P++ R+ A L A+ + L DE R S AV+R +I M +S++ R
Sbjct: 79 INMDGSEGPRAQSTRAFARNL---ASLTDLPIGLWDE-RLSTAAVERELIGMDVSRARRA 134
Query: 179 TKTDAYAAVILLE 191
D +AA+ +L+
Sbjct: 135 EVIDTHAAIFILQ 147
>gi|363895051|ref|ZP_09322071.1| hypothetical protein HMPREF9629_00369 [Eubacteriaceae bacterium
ACC19a]
gi|361959808|gb|EHL13069.1| hypothetical protein HMPREF9629_00369 [Eubacteriaceae bacterium
ACC19a]
Length = 142
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 33/138 (23%), Positives = 65/138 (47%), Gaps = 5/138 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQL---LEIAQREETDEFIIGLPKSW 122
L +D+G + G+A++ + +R + LE Q+ + I ++GLPK+
Sbjct: 5 LALDVGKKKIGIAITDLLQITAQPHSTIRSKNLEEQIDKIIAIIDENSIKTVVVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+ SE Q++ ++ +++ A ++ + +DE TS A+ + +M + K + D
Sbjct: 65 NDSEGDQASWTKNFVEKIS--AKKQDIEIVYIDERLTSKMALSSLKHMNMKKIKEKGLID 122
Query: 183 AYAAVILLERYFSMSGQG 200
AAV +LE Y G
Sbjct: 123 TVAAVNILETYLKRKENG 140
>gi|445414099|ref|ZP_21433824.1| RNAse H domain protein, YqgF family [Acinetobacter sp. WC-743]
gi|444764918|gb|ELW89223.1| RNAse H domain protein, YqgF family [Acinetobacter sp. WC-743]
Length = 147
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ PL + ++ G +LL+I ++ + + F++GLP +
Sbjct: 11 IAFDFGTQKMGMAVGSSLIESATPLALFPMKDGIPNWDELLKIVKQHQPNLFLVGLPLNM 70
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A R+ + ++DE T+ EA D + + A++ D
Sbjct: 71 DDSESELSTRARKFARRI---RHQTNIETVMVDERLTTREARDELEHYQAQGRAKKLAAD 127
Query: 183 AYAAVILLERYF 194
+ AA + +E ++
Sbjct: 128 SIAAALFIESWY 139
>gi|387760379|ref|YP_006067356.1| hypothetical protein Ssal_00067 [Streptococcus salivarius 57.I]
gi|339291146|gb|AEJ52493.1| conserved hypothetical protein [Streptococcus salivarius 57.I]
Length = 136
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 11/137 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + + ++K+ E E +L E+ + + ++F++GLPK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVEKFVVGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + +E P+ ++ ++ G V DE T+ +A +RM+ +S+ R+
Sbjct: 61 NMNNTEGPRVEASKAYGDKI---KEIFGIPVDYQDERLTTVQA-ERMLVEQADISRGKRK 116
Query: 179 TKTDAYAAVILLERYFS 195
D AA ++L+ Y
Sbjct: 117 KVIDKLAAQLILQNYLD 133
>gi|229553800|ref|ZP_04442525.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
LMS2-1]
gi|385834683|ref|YP_005872457.1| hypothetical protein LRHK_768 [Lactobacillus rhamnosus ATCC 8530]
gi|229312823|gb|EEN78796.1| crossover junction endodeoxyribonuclease [Lactobacillus rhamnosus
LMS2-1]
gi|355394174|gb|AER63604.1| conserved hypothetical protein [Lactobacillus rhamnosus ATCC 8530]
Length = 144
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + L ++++ +K + +L E+ + E F++GLPK
Sbjct: 4 MGLDVGSRTVGVAVSDPLGWTAQGLEIIRINEDKQQFGLTRLKELVTQYEVTAFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ + S P++ K ++ L G V +DE T+ EA +I + RQ +
Sbjct: 64 NMNNSIGPRAEKSQAYGDLL---KETFGLPVDFIDERLTTVEASRMLIEEADASRKRQKQ 120
Query: 181 T-DAYAAVILLERYFSMSG 198
D AA ++L+ Y G
Sbjct: 121 VIDKLAAQMILQNYLDAKG 139
>gi|220903317|ref|YP_002478629.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
gi|219867616|gb|ACL47951.1| Holliday junction resolvase YqgF [Desulfovibrio desulfuricans
subsp. desulfuricans str. ATCC 27774]
Length = 140
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 44/138 (31%), Positives = 67/138 (48%), Gaps = 9/138 (6%)
Query: 68 VDLGLSRTGLALSK--GFCVRPLTVLKLRG---EKLELQLL-EIAQREETDEFIIGLPKS 121
+D GL+RTGLA+S G PL ++L+ KL L L E + ++GLP +
Sbjct: 1 MDYGLARTGLAVSDPDGRMAFPLATVRLQDYTDRKLFLAALAEKIIEAGAEAVVVGLPLT 60
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG E+ + +VR+V RL R Y + E +S EA + GL R+
Sbjct: 61 QDGKESLTTRQVRNVTQRLKRRIP---LPFYYMVEELSSEEAWADLREAGLKMRKRKAVL 117
Query: 182 DAYAAVILLERYFSMSGQ 199
D AAV +L + +++ Q
Sbjct: 118 DQQAAVRILSSFLALAPQ 135
>gi|399154679|ref|ZP_10754746.1| hypothetical protein gproSAA_02543 [gamma proteobacterium SCGC
AAA007-O20]
Length = 142
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/134 (26%), Positives = 66/134 (49%), Gaps = 7/134 (5%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPL---TVLKLR-GEKLELQLLEIAQREETDEFIIGLPKS 121
LG D+G RTG+A++ TVL + G QL ++ + + D F++GLP
Sbjct: 7 LGFDVGTKRTGIAIANSLTSHASGIETVLHHKDGSTNWSQLEKLINKHQADIFVVGLPLD 66
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
G E + RS +L R ++ V +DE+ +S+EA +++ K+A +
Sbjct: 67 GKGKEQEMTFIARSFGRKLEQRFSK---EVVFIDEYLSSSEAKNQLKWHHAHKNADRADV 123
Query: 182 DAYAAVILLERYFS 195
D +A ++L+ + +
Sbjct: 124 DKRSAELILQTWLN 137
>gi|163816752|ref|ZP_02208115.1| hypothetical protein COPEUT_02942 [Coprococcus eutactus ATCC 27759]
gi|158448009|gb|EDP25004.1| RNAse H domain protein, YqgF family [Coprococcus eutactus ATCC
27759]
Length = 149
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/148 (27%), Positives = 66/148 (44%), Gaps = 16/148 (10%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPL-TVLKLRGEKLELQLLEI----------AQREETD 112
LG+D G G+A+S +PL T+ + KL L I Q+E+ +
Sbjct: 4 LGLDYGTKTVGVAVSDPLEITAQPLETIERKSAGKLRQTLARIEAIIEEYGAAGQQEKIE 63
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGL 172
+ ++G PK+ + +E + S L R G V L DE T+ EA +++ G+
Sbjct: 64 KIVLGYPKNMNNTEGDRCEATVSFKNDLERRT---GLEVVLWDERLTTVEAERILMDSGV 120
Query: 173 SKSARQTKTDAYAAVILLERYFSMSGQG 200
+ R+T D AA ++L+ Y G
Sbjct: 121 RRENRKTYIDKMAAAVILQNYLDSKSNG 148
>gi|395212533|ref|ZP_10399842.1| Holliday junction resolvase YqgF [Pontibacter sp. BAB1700]
gi|394457154|gb|EJF11344.1| Holliday junction resolvase YqgF [Pontibacter sp. BAB1700]
Length = 138
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 37/131 (28%), Positives = 59/131 (45%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
LG+D G R GLA + + + + + + L RE + F++G+P+ G
Sbjct: 5 LGIDYGNKRVGLAATDTLQIIASPLETIHAKDVLTYLKAYTLREPVEAFVVGMPRRLTGE 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
T + V +L + G V+ +DE TS+ A M+ GL K RQ K D
Sbjct: 65 ATDATPHVIGFVRKL--QKEFPGIPVHTVDERFTSSMAQKAMLAGGLKKKDRQDKGTVDR 122
Query: 184 YAAVILLERYF 194
+A I+L+ Y
Sbjct: 123 VSAAIILQSYL 133
>gi|429741020|ref|ZP_19274689.1| RNAse H domain protein, YqgF family [Porphyromonas catoniae F0037]
gi|429159689|gb|EKY02186.1| RNAse H domain protein, YqgF family [Porphyromonas catoniae F0037]
Length = 150
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 40/149 (26%), Positives = 66/149 (44%), Gaps = 5/149 (3%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +D G R GLA++ + P + + +L +L+ +REE + I+G P+
Sbjct: 2 GRLLAIDYGQKRCGLAVTDPLQIVPGGLGTIPTHQLLSFVLDYVKREEVERIIVGYPRQM 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
+ E+ +R +L A + DE TS A + G+ K R+T
Sbjct: 62 NNQESASMKLIRPFVQKL--HQALPSLPIDYQDERFTSTLAQRAIREAGIGKRRRETDKG 119
Query: 181 -TDAYAAVILLERYFSMSGQGTEIVLPKR 208
D +AVI+L+ Y + EI LP +
Sbjct: 120 LVDEVSAVIILQSYLASREGLGEINLPHQ 148
>gi|384227963|ref|YP_005619708.1| putative Holliday junction resolvase [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
gi|345538903|gb|AEO08880.1| putative Holliday junction resolvase [Buchnera aphidicola str. Ak
(Acyrthosiphon kondoi)]
Length = 136
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 62/133 (46%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
+ D G+ + G+A+ + RPL VL K ++ + Q + I+GLP +
Sbjct: 4 IAFDFGIKKIGVAVGENITKKGRPLNVLNAHHGKPNWNNIKNLIQYWQPKFIIVGLPLNI 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G++ +NK A L + V + DE T+ EA + K+ +Q K
Sbjct: 64 NGTKQNMTNKSEKFANLLKCKFNTI---VKMHDERLTTVEAKSIIFKKNGFKALKQEKIH 120
Query: 183 AYAAVILLERYFS 195
+ AAVI+LE +F+
Sbjct: 121 SCAAVIILESWFN 133
>gi|256820223|ref|YP_003141502.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271]
gi|256581806|gb|ACU92941.1| Holliday junction resolvase YqgF [Capnocytophaga ochracea DSM 7271]
Length = 143
Score = 47.8 bits (112), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 59/132 (44%), Gaps = 4/132 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + + L L + E + F+IG PK +
Sbjct: 4 LAIDYGTKRTGIAVTDPLQIIASGLCTVETSTLLAFLKQYTAEEAVEAFVIGQPKRMNSE 63
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT--DA 183
++ +++ +L E ++ DE TS A MI+ GL K RQ K D
Sbjct: 64 DSSVEAEIQKFISKLQQEFPE--IPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKALIDE 121
Query: 184 YAAVILLERYFS 195
+A I+L+ + S
Sbjct: 122 ISATIILQEFLS 133
>gi|238916712|ref|YP_002930229.1| Holliday junction resolvase [Eubacterium eligens ATCC 27750]
gi|259495704|sp|C4Z578.1|RUVX_EUBE2 RecName: Full=Putative Holliday junction resolvase
gi|238872072|gb|ACR71782.1| putative Holliday junction resolvase [Eubacterium eligens ATCC
27750]
Length = 140
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/135 (28%), Positives = 62/135 (45%), Gaps = 9/135 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPL-TVLKLRGEKLE---LQLLEIAQREETDEFIIGLP 119
+G+D+G G+ALS G +P T+ + KL ++ +I + E ++G P
Sbjct: 4 IGLDVGTKTVGVALSDPLGITAQPFETITRKENNKLRRTYARIEQIISEYDVTEIVVGYP 63
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ D + ++ A L R G V L DE T+ EA + + G+ + R+T
Sbjct: 64 KNMDDTIGERAKACEEFAAALERRT---GLPVTLWDERLTTVEADEVLEECGMRRENRKT 120
Query: 180 KTDAYAAVILLERYF 194
D AAV +L Y
Sbjct: 121 VIDQLAAVFILRGYM 135
>gi|228478096|ref|ZP_04062707.1| conserved hypothetical protein [Streptococcus salivarius SK126]
gi|228250276|gb|EEK09529.1| conserved hypothetical protein [Streptococcus salivarius SK126]
Length = 139
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 11/137 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + + ++K+ E E +L E+ + + ++F++GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVEKFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + +E P+ ++ ++ G V DE T+ +A +RM+ +S+ R+
Sbjct: 64 NMNNTEGPRVEASKAYGDKI---KEIFGIPVDYQDERLTTVQA-ERMLVEQADISRGKRK 119
Query: 179 TKTDAYAAVILLERYFS 195
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|225017619|ref|ZP_03706811.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum
DSM 5476]
gi|224949584|gb|EEG30793.1| hypothetical protein CLOSTMETH_01548 [Clostridium methylpentosum
DSM 5476]
Length = 145
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
+ VD G +RTGLA+ F P+ ++ R + + +A +E + ++G PK+
Sbjct: 4 MAVDFGDARTGLAVCDRTEFLASPIGTIQERDFNMAVCKTAVAAKEYDVKMVVVGYPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGS ++ K A RL + L DE +T+ A + + + R+ D
Sbjct: 64 DGSCGERAKKCEEFAKRLGEMIP---LPIKLWDERQTTVSAHQFLNEVNVRGQKRKEVVD 120
Query: 183 AYAAVILLERYF 194
AA I+LE Y
Sbjct: 121 EVAATIILESYL 132
>gi|154490275|ref|ZP_02030536.1| hypothetical protein PARMER_00507 [Parabacteroides merdae ATCC
43184]
gi|154089167|gb|EDN88211.1| RNAse H domain protein, YqgF family [Parabacteroides merdae ATCC
43184]
Length = 140
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 59/134 (44%), Gaps = 4/134 (2%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G + +D G RTGLA++ + + + +L L + RE + F++GLPK
Sbjct: 2 GRIIAIDYGRKRTGLAVTDTLQMIANGLTTVPSGELTRFLADYVSREPVERFVVGLPKQM 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
+ + V + L + Y DE TS A M++ GL K RQ K
Sbjct: 62 NNELSENMRYVEAFVTHLKRTIPDIPVEYY--DERFTSVLAHKAMLDGGLKKKKRQDKGL 119
Query: 181 TDAYAAVILLERYF 194
D +AVI+L+ Y
Sbjct: 120 VDEISAVIILQSYL 133
>gi|94501646|ref|ZP_01308162.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65]
gi|94426222|gb|EAT11214.1| Holliday junction resolvase-like protein [Oceanobacter sp. RED65]
Length = 154
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/133 (26%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
+G D G R G+A+ + + ++ + + K + L+ + + + D F++GLP +
Sbjct: 14 MGFDFGTKRMGVAMGQRLTQQAQGISCINAKDGKPNWEQLDALVEEWQPDGFVVGLPFNM 73
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE+ S + + RL R G Y +DE T+ EA G + D
Sbjct: 74 DGSESDMSRRANKFSKRLHGRY---GLPSYTIDERLTTFEAKHIARQQGHKGHYKSDPVD 130
Query: 183 AYAAVILLERYFS 195
AA +LE + S
Sbjct: 131 ELAAQFILETWLS 143
>gi|378825623|ref|YP_005188355.1| putative Holliday junction resolvase [Sinorhizobium fredii HH103]
gi|365178675|emb|CCE95530.1| putative Holliday junction resolvase [Sinorhizobium fredii HH103]
Length = 162
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/130 (30%), Positives = 66/130 (50%), Gaps = 10/130 (7%)
Query: 67 GVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
G+DLG GL++S + F P VL+ ++ Q LL A +E F+IGLP +
Sbjct: 21 GLDLGTKTIGLSVSDLGRRFAT-PRDVLRRVKFGIDAQVLLNFAAKERIGAFVIGLPVNM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKT 181
DG+E P+ R+ + E+ ++L + R S A +R +I M +S+ R +
Sbjct: 80 DGTEGPRCQATRAFVRSM----GEKTEIPFVLWDERLSTVAAERVLIEMDVSRRKRAERI 135
Query: 182 DAYAAVILLE 191
D+ AA +L+
Sbjct: 136 DSAAASFILQ 145
>gi|343522288|ref|ZP_08759254.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 175
str. F0384]
gi|343401697|gb|EGV14203.1| RNAse H domain protein, YqgF family [Actinomyces sp. oral taxon 175
str. F0384]
Length = 171
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 69/145 (47%), Gaps = 7/145 (4%)
Query: 60 WRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQL---LEIAQREETDEFII 116
+R G + D+G +R G+A + V+ LR ++ L +++ + E I+
Sbjct: 13 FRPGVRIAFDVGKARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVIV 72
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLPK G + + R+ A LA R +R V L+DE T+ A + GL + +
Sbjct: 73 GLPKHMGGGSSSSTRDARAWARDLASRLPQRVC-VRLVDERLTTVSAHRDLHAAGLKERS 131
Query: 177 RQTKTDAYAAVILLERYFS---MSG 198
+ D AAV++LE+ + MSG
Sbjct: 132 FRGIVDQAAAVVILEQAITTERMSG 156
>gi|343526492|ref|ZP_08763442.1| RNAse H domain protein, YqgF family [Streptococcus constellatus
subsp. pharyngis SK1060 = CCUG 46377]
gi|423069752|ref|ZP_17058537.1| Holliday junction resolvase [Streptococcus intermedius F0395]
gi|343394443|gb|EGV06991.1| RNAse H domain protein, YqgF family [Streptococcus constellatus
subsp. pharyngis SK1060 = CCUG 46377]
gi|355363626|gb|EHG11362.1| Holliday junction resolvase [Streptococcus intermedius F0395]
Length = 139
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 71/137 (51%), Gaps = 13/137 (9%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + E+ E +L E+ Q + D+F++GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIPINEEQEEFGFERLTELVQEYKVDKFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYL-LDEHRTSAEAVDRMI--NMGLSKSAR 177
+ + + P+ ++ ++ E+ + + + + R + A +RM+ +S+ R
Sbjct: 64 NMNNTSGPRVEASQAYGTKI-----EQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKR 118
Query: 178 QTKTDAYAAVILLERYF 194
+ D AA ++L+ Y
Sbjct: 119 KKVIDKLAAQLILQNYL 135
>gi|393780768|ref|ZP_10368974.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
412 str. F0487]
gi|392607882|gb|EIW90748.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
412 str. F0487]
Length = 143
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + + L L + E + F+IG PK +
Sbjct: 4 LAIDYGTKRTGIAVTDPLQIIASGLCTVETPTLLAFLKQYTAEEAVEAFVIGQPKRLNNE 63
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT--DA 183
++ +++ +L E ++ DE TS A MI+ GL K RQ K D
Sbjct: 64 DSSVEAEIQKFISKLQQEFPE--IPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKALIDE 121
Query: 184 YAAVILLERYFSMSGQGTE 202
+A I+L+ + +SG+ E
Sbjct: 122 ISATIILQEF--LSGRANE 138
>gi|421860863|ref|ZP_16292942.1| predicted endonuclease [Paenibacillus popilliae ATCC 14706]
gi|410829577|dbj|GAC43379.1| predicted endonuclease [Paenibacillus popilliae ATCC 14706]
Length = 138
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIGLPKSW 122
LG+D G + G+A+S G+ + L V+ R + +L+ + +I + +E +IGLPK+
Sbjct: 4 LGLDYGDRKIGVAVSDAFGWTAQGLEVIVRRKPEDDLRRIGDIIKEHGVEEIVIGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P+ S A + G V+L DE ++ A ++ +S+ R+ D
Sbjct: 64 NGTIGPRGELSMSYA---EILKQSFGLPVHLWDERLSTVSAERALLEADVSRKKRRQVID 120
Query: 183 AYAAVILLERYF 194
AA I+L+ Y
Sbjct: 121 KMAATIILQTYL 132
>gi|315225648|ref|ZP_07867456.1| Holliday junction resolvase [Capnocytophaga ochracea F0287]
gi|420159247|ref|ZP_14666054.1| RNAse H domain protein, YqgF family [Capnocytophaga ochracea str.
Holt 25]
gi|429756570|ref|ZP_19289159.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
324 str. F0483]
gi|314944375|gb|EFS96416.1| Holliday junction resolvase [Capnocytophaga ochracea F0287]
gi|394762545|gb|EJF44764.1| RNAse H domain protein, YqgF family [Capnocytophaga ochracea str.
Holt 25]
gi|429171105|gb|EKY12747.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
324 str. F0483]
Length = 143
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/139 (26%), Positives = 63/139 (45%), Gaps = 6/139 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + + L L + E + F+IG PK +
Sbjct: 4 LAIDYGTKRTGIAVTDPLQIIASGLCTVETPTLLAFLKQYTAEEAVEAFVIGQPKRMNSE 63
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT--DA 183
++ +++ +L E ++ DE TS A MI+ GL K RQ K D
Sbjct: 64 DSSVEAEIQKFISKLQQEFPE--IPIHRQDERFTSKLAFQTMIDSGLKKKQRQNKALIDE 121
Query: 184 YAAVILLERYFSMSGQGTE 202
+A I+L+ + +SG+ E
Sbjct: 122 ISATIILQEF--LSGRANE 138
>gi|126640401|ref|YP_001083385.1| Holliday junction resolvase-like protein [Acinetobacter baumannii
ATCC 17978]
Length = 128
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 51/94 (54%), Gaps = 3/94 (3%)
Query: 101 QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160
QLL+I + + D FI+GLP + D SE+ S + R A RL + W ++DE T+
Sbjct: 30 QLLKIVKEWQPDLFIVGLPLNMDDSESELSTRARKFARRLRHQTNIETW---MVDERLTT 86
Query: 161 AEAVDRMINMGLSKSARQTKTDAYAAVILLERYF 194
EA + + A++ D++AA +L++ ++
Sbjct: 87 REAREELGFYQEQGRAKKLSADSFAAALLIQSWY 120
>gi|433545191|ref|ZP_20501551.1| Holliday junction resolvase [Brevibacillus agri BAB-2500]
gi|432183580|gb|ELK41121.1| Holliday junction resolvase [Brevibacillus agri BAB-2500]
Length = 134
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+D+G G+A+S G+ + + +K + ++ +L ++ E+ + F++GLPK+
Sbjct: 1 MGLDVGDKTIGIAVSDELGWTAQGVETIKRQSKEKDLARIQELVAHYQVGAFVVGLPKNM 60
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P++ ++ L R + V++ DE T+ A +I+ +S+ R+T D
Sbjct: 61 NGTIGPRAEMCQAFGKLLEERTS---LPVHMWDERLTTMAAERMLISADVSRQKRKTVID 117
Query: 183 AYAAVILLERYF 194
AA ++L+ +
Sbjct: 118 KMAATLILQGFL 129
>gi|51893132|ref|YP_075823.1| hypothetical protein STH1994 [Symbiobacterium thermophilum IAM
14863]
gi|62900963|sp|Q67MW4.1|RUVX_SYMTH RecName: Full=Putative Holliday junction resolvase
gi|51856821|dbj|BAD40979.1| conserved hypothetical protein [Symbiobacterium thermophilum IAM
14863]
Length = 144
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 68/131 (51%), Gaps = 6/131 (4%)
Query: 67 GVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSWD 123
G+D+G G+ALS G + L V++ R + +L +L EIA+ +++G+P++ +
Sbjct: 5 GLDVGEKTIGVALSDELGLTAQALEVIRRRSLEQDLARLDEIARHYGVVRWVVGMPRNMN 64
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+ P++ R+ RL A G V DE ++ A ++ +S++ R+ D
Sbjct: 65 GTYGPRAELTRAFMERL---AGHSGLPVEAWDERLSTMAAERVLLEADVSRARRRKVIDK 121
Query: 184 YAAVILLERYF 194
AA ++L+ Y
Sbjct: 122 MAAAVILQGYL 132
>gi|338707457|ref|YP_004661658.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
gi|336294261|gb|AEI37368.1| Holliday junction resolvase YqgF [Zymomonas mobilis subsp. pomaceae
ATCC 29192]
Length = 174
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 72/140 (51%), Gaps = 9/140 (6%)
Query: 56 KDSLWRGGFSLGVDLGLSRTGLAL--SKGFCVRPLTVLKLRGEKLELQLL-EIAQREETD 112
+++L GG G+D+G GLA+ S+ P ++ + L+ +LL + +++
Sbjct: 31 REALPSGGRLAGLDVGTKTIGLAVCDSQWIIASPSETIRRKKFTLDFELLKQFITKQQIK 90
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMG 171
+IGLP S DG+++P++ VR+ + + G V + DE R S +AV R ++
Sbjct: 91 GLVIGLPLSLDGTDSPRTQSVRAFSRNM----EPLGLPVLMWDE-RWSTKAVTRTLLEAD 145
Query: 172 LSKSARQTKTDAYAAVILLE 191
S++ R D AA +L+
Sbjct: 146 ASRARRSEVVDKMAAAYILQ 165
>gi|406917301|gb|EKD56128.1| hypothetical protein ACD_58C00294G0002 [uncultured bacterium]
Length = 138
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/134 (23%), Positives = 70/134 (52%), Gaps = 4/134 (2%)
Query: 66 LGVDLGLSRTGLALSK-GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSWD 123
L +D+G + G+A S+ G + + + ++L + + ++ D+ IIGLP
Sbjct: 4 LSLDVGTKKIGVAYSEYGLLADEFCTINYTSQLQAITEILFLIKNKKVDKLIIGLPCYAS 63
Query: 124 GSETPQSNKVRSVAGRL--AVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
G+++ Q+N VR + +L +++++ ++ DE T+ EA + + G S + +
Sbjct: 64 GTDSNQTNHVRDFSKKLEEKIKSSKIDAQILFEDEELTTKEAERILFSQGKSLEVVRERR 123
Query: 182 DAYAAVILLERYFS 195
D AA ++L++Y +
Sbjct: 124 DQLAAKLILDQYLN 137
>gi|406026855|ref|YP_006725687.1| holliday junction resolvase [Lactobacillus buchneri CD034]
gi|405125344|gb|AFS00105.1| putative holliday junction resolvase [Lactobacillus buchneri CD034]
Length = 141
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 11/145 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQL---LEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + + ++++ + E L E+ ++ + D F++GLPK
Sbjct: 1 MGLDVGSKTVGVAVSDELGWTSQGVEIIRIDEDNKEFGLDRVSELVKKYQVDGFVVGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN--MGLSKSARQ 178
+ + S P++ + RL + V DE T+ EA RM+ +S++ R+
Sbjct: 61 NMNNSLGPRAEASQQYGKRLEDKF---NLPVDFEDERLTTVEA-QRMLTEEADVSRAKRK 116
Query: 179 TKTDAYAAVILLERYFSMSGQGTEI 203
D AA ++L+ Y +G+ T+I
Sbjct: 117 KVIDKLAAGLILQNYLDSNGKLTKI 141
>gi|417091713|ref|ZP_11956519.1| Holliday junction resolvase-like protein [Streptococcus suis R61]
gi|353533019|gb|EHC02687.1| Holliday junction resolvase-like protein [Streptococcus suis R61]
Length = 136
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 37/136 (27%), Positives = 71/136 (52%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + EK E +L E+ ++ + D+F++GLPK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGLEIIPIDEEKGEFGFQRLTELVEQYKVDKFVVGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ G L + + V DE T+ A +RM+ +S+ R+
Sbjct: 61 NMNNTSGPRVEASQAY-GNLLIEQFK--LPVDYQDERLTTV-AAERMLIEQADISRGKRK 116
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 117 KVIDKLAAQLILQNYL 132
>gi|340399823|ref|YP_004728848.1| putative Holliday junction resolvase [Streptococcus salivarius
CCHSS3]
gi|387785051|ref|YP_006071134.1| putative Holliday junction resolvase [Streptococcus salivarius
JIM8777]
gi|338743816|emb|CCB94326.1| putative Holliday junction resolvase [Streptococcus salivarius
CCHSS3]
gi|338745933|emb|CCB96299.1| putative Holliday junction resolvase [Streptococcus salivarius
JIM8777]
Length = 136
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 11/137 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + + ++K+ E E +L E+ + + ++F++GLPK
Sbjct: 1 MGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVEKFVVGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + +E P+ ++ ++ G V DE T+ +A +RM+ +S+ R+
Sbjct: 61 NMNNTEGPRVEASKAYGDKI---KEIFGIPVDYQDERLTTVQA-ERMLVEQADVSRGKRK 116
Query: 179 TKTDAYAAVILLERYFS 195
D AA ++L+ Y
Sbjct: 117 KVIDKLAAQLILQNYLD 133
>gi|145632549|ref|ZP_01788283.1| Holliday junction resolvase-like protein [Haemophilus influenzae
3655]
gi|229845007|ref|ZP_04465144.1| Holliday junction resolvase-like protein [Haemophilus influenzae
6P18H1]
gi|144986744|gb|EDJ93296.1| Holliday junction resolvase-like protein [Haemophilus influenzae
3655]
gi|229812141|gb|EEP47833.1| Holliday junction resolvase-like protein [Haemophilus influenzae
6P18H1]
Length = 139
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+G +G S TG A + L K + + +E +E + D I+GLP + D
Sbjct: 14 SIGCAIGQSITGTA-------QTLPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E + + R A RL R G ++L DE T+ +A + G K+ ++ K D
Sbjct: 67 GTEQDLTLRARKFANRLQGRF---GVNIHLQDERLTTTQARSEIFERGGFKALKKGKIDG 123
Query: 184 YAAVILLERYFSMS 197
+A ++LE +F +
Sbjct: 124 VSACLILESWFEYA 137
>gi|433456408|ref|ZP_20414455.1| Holliday junction resolvase-like protein [Arthrobacter
crystallopoietes BAB-32]
gi|432196331|gb|ELK52795.1| Holliday junction resolvase-like protein [Arthrobacter
crystallopoietes BAB-32]
Length = 192
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 73/152 (48%), Gaps = 9/152 (5%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEK---LELQLLEIAQREETDEFIIG 117
G LGVD+G R GLA S G P+ LK +K + + + E A+R + F+ G
Sbjct: 9 GSKLGVDVGQVRVGLAGSDPGGILATPIRTLKRDPKKNSDIRIVVREAAERSASQVFV-G 67
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINMGLSKS 175
LP++ G ++ ++ R A +LA A G V ++DE T+ A + G++
Sbjct: 68 LPRTMKGGDSASTHMAREYAEQLAAALAAAGLGTLVSMIDERLTTVSAHRTLHGAGMNSR 127
Query: 176 ARQTKTDAYAAVILLERYFSMS-GQGTEIVLP 206
+ D AAV +L+ M QG ++ +P
Sbjct: 128 EHRKVVDQVAAVEILQHALDMQRAQGRDVGIP 159
>gi|383450107|ref|YP_005356828.1| putative Holliday junction resolvase [Flavobacterium indicum
GPTSA100-9]
gi|380501729|emb|CCG52771.1| Putative Holliday junction resolvase [Flavobacterium indicum
GPTSA100-9]
Length = 138
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 58/132 (43%), Gaps = 4/132 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + + + L +E+ D+ IIG PK DGS
Sbjct: 5 LSIDYGQKRTGIAVTDEMQIIASGLTTIETPVIFDFLTNYFSKEKVDKVIIGEPKQMDGS 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT--DA 183
+ + + + + +DE TS A MI+ GL K RQ K D
Sbjct: 65 PSESAIYIEKFCENFQNKFP--NLPLVKVDERFTSKMAFQTMIDSGLKKKQRQNKALIDE 122
Query: 184 YAAVILLERYFS 195
AA I+L+ + +
Sbjct: 123 IAATIILQDFLN 134
>gi|372211165|ref|ZP_09498967.1| Holliday junction resolvase [Flavobacteriaceae bacterium S85]
Length = 135
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/134 (26%), Positives = 61/134 (45%), Gaps = 9/134 (6%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
+G+D G R GLA + + + + + + L E Q + F++G PK DGS
Sbjct: 5 IGIDYGTVRIGLAETDDLKMMAFGLDTVATKDIFRYLNEYLQNNTVELFVVGEPKQMDGS 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYL--LDEHRTSAEAVDRMINMGLSKSARQTK--T 181
+ ++ +L + + + + DE TS A + M+ G+SK RQ K
Sbjct: 65 FSESEIHIQEFIKKL-----DSTYHIPIQRFDERFTSKMAFNTMLASGISKKKRQNKGLI 119
Query: 182 DAYAAVILLERYFS 195
D +A I+L+ Y +
Sbjct: 120 DKISATIILQEYLN 133
>gi|253996010|ref|YP_003048074.1| Holliday junction resolvase-like protein [Methylotenera mobilis
JLW8]
gi|253982689|gb|ACT47547.1| Holliday junction resolvase YqgF [Methylotenera mobilis JLW8]
Length = 156
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 63/140 (45%), Gaps = 6/140 (4%)
Query: 61 RGGFSLGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLL-EIAQREETDEFIIG 117
+ G L D G R G+A+ + PL + ++ Q++ ++ + ++G
Sbjct: 16 QSGTVLAFDFGERRIGIAVGEHLLASANPLMTIDNESNEIRFQIITKLVSEWQPRLLVVG 75
Query: 118 LPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
LP S DGSE + + A RL R V L+DE +SAEA + G+ A+
Sbjct: 76 LPLSLDGSEHGVTQLCKKFARRLNGRF---NLPVALIDERYSSAEASQLLNEAGIRGRAQ 132
Query: 178 QTKTDAYAAVILLERYFSMS 197
+ D AA +L+ YF +
Sbjct: 133 KEMLDQVAAQTILQSYFDQA 152
>gi|373467956|ref|ZP_09559242.1| RNAse H domain protein, YqgF family [Haemophilus sp. oral taxon 851
str. F0397]
gi|371756994|gb|EHO45793.1| RNAse H domain protein, YqgF family [Haemophilus sp. oral taxon 851
str. F0397]
Length = 141
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+G +G S TG A + L K + ++E +E + D ++GLP + D
Sbjct: 14 SIGCAVGQSITGTA-------QALPAFKAQDGIPNWDVIEKCLKEWKPDVVVVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E + + R A RL R G V L DE T+ EA + + G ++ ++ K D
Sbjct: 67 GTEQDLTLRARKFANRLQGRF---GVNVQLQDERLTTTEARSEIFDRGGFRALKKGKVDG 123
Query: 184 YAAVILLERYFSMS 197
+A ++LE +F ++
Sbjct: 124 ISACLILESWFEVA 137
>gi|189485524|ref|YP_001956465.1| putative Holliday junction resolvase RuvX [uncultured Termite group
1 bacterium phylotype Rs-D17]
gi|226695313|sp|B1H0H2.1|RUVX_UNCTG RecName: Full=Putative Holliday junction resolvase
gi|170287483|dbj|BAG14004.1| putative Holliday junction resolvase RuvX [uncultured Termite group
1 bacterium phylotype Rs-D17]
Length = 140
Score = 47.8 bits (112), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 68/136 (50%), Gaps = 9/136 (6%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+G+D GL R G+A++ P TV + +K L++LEIA+ + ++GLP +
Sbjct: 5 MGIDYGLKRIGIAITDFLRITASPFDTVKNVSLKKNALKILEIAKNRDVSIIVLGLPLNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQTK 180
+G+E + VR ++ + V +DE T+ +A +RM+ +S+ R+
Sbjct: 65 NGTEGGMAETVRKFIEKIKFLS---DIEVTTVDERLTTVQA-ERMLIEEADISREKRKGI 120
Query: 181 TDAYAAVILLERYFSM 196
D A ++L+ Y +
Sbjct: 121 KDKVVAALILQTYLDI 136
>gi|399050732|ref|ZP_10740776.1| RNAse H-fold protein YqgF [Brevibacillus sp. CF112]
gi|398051448|gb|EJL43770.1| RNAse H-fold protein YqgF [Brevibacillus sp. CF112]
Length = 138
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 71/132 (53%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
+G+D+G G+A+S G+ + + +K + ++ +L ++ E+ + F++GLPK+
Sbjct: 5 MGLDVGDKTIGIAVSDELGWTAQGVETIKRQSKEKDLARIQELVAHYQVGAFVVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P++ ++ L R + V++ DE T+ A +I+ +S+ R+T D
Sbjct: 65 NGTIGPRAEMCQAFGKLLEERTS---LPVHMWDERLTTMAAERMLISADVSRQKRKTVID 121
Query: 183 AYAAVILLERYF 194
AA ++L+ +
Sbjct: 122 KMAATLILQGFL 133
>gi|402487495|ref|ZP_10834313.1| Holliday junction resolvase-like protein [Rhizobium sp. CCGE 510]
gi|401813364|gb|EJT05708.1| Holliday junction resolvase-like protein [Rhizobium sp. CCGE 510]
Length = 162
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 67/131 (51%), Gaps = 12/131 (9%)
Query: 67 GVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
G+DLG GL++S + F P V++ ++ Q LL+ AQ E+ F+IGLP +
Sbjct: 21 GLDLGTKTIGLSMSDLGRRFAT-PRPVIRRIKFTIDAQALLDFAQSEKVCGFVIGLPMNM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLL--DEHRTSAEAVDRMINMGLSKSARQTK 180
DGS P+ R+ VR E+ + L DE ++ A ++ M +S++ R +
Sbjct: 80 DGSAGPRVQATRAF-----VRNMEQKTALPFLYWDERLSTVAAERTLLEMDVSRAKRAER 134
Query: 181 TDAYAAVILLE 191
D+ AA +L+
Sbjct: 135 IDSAAASFILQ 145
>gi|365888902|ref|ZP_09427634.1| putative Holliday junction resolvase [Bradyrhizobium sp. STM 3809]
gi|365335381|emb|CCE00165.1| putative Holliday junction resolvase [Bradyrhizobium sp. STM 3809]
Length = 161
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 63 GFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLP 119
G +G+DLG G+A+S + T+ + + +LL I + F++GLP
Sbjct: 19 GALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLAICAERKVVGFVLGLP 78
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQ 178
+ DGSE P++ R+ A L A + L DE R S AV+R +I M +S++ R
Sbjct: 79 INMDGSEGPRAQSTRAFARNL---AGLTDLPIGLWDE-RLSTAAVERELIGMDVSRARRA 134
Query: 179 TKTDAYAAVILLE 191
D +AA+ +L+
Sbjct: 135 EVIDTHAAIFILQ 147
>gi|189220288|ref|YP_001940928.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4]
gi|189187146|gb|ACD84331.1| RNase H-like ribonuclease [Methylacidiphilum infernorum V4]
Length = 168
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 66/137 (48%), Gaps = 12/137 (8%)
Query: 66 LGVDLGLSRTGLALS-KGFCVR-PLTVLKLRGE-KLELQLLEIAQREETDEFIIGLPKSW 122
L +D G GLA++ + F + PL L K +L EI E I+GLP++
Sbjct: 26 LSLDYGNKHIGLAVNDESFSIAIPLDPLPAEPYVKFIGKLKEIIVNYEVSLLIVGLPRNM 85
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEH--RTSAEAVDRMIN-MGLSKSARQT 179
DGS P + KVR +L + W ++ H R + + DR++ G + ++
Sbjct: 86 DGSYGPAAEKVRQFVLKL------KQWIPIPVEFHDERLTTKLADRLLTQCGCNGREKKK 139
Query: 180 KTDAYAAVILLERYFSM 196
K D+YAA ++L+ Y +
Sbjct: 140 KIDSYAAAVILQSYLDV 156
>gi|387769206|ref|ZP_10125472.1| RNAse H domain protein, YqgF family [Pasteurella bettyae CCUG 2042]
gi|386907162|gb|EIJ71877.1| RNAse H domain protein, YqgF family [Pasteurella bettyae CCUG 2042]
Length = 139
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/134 (30%), Positives = 62/134 (46%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLPK 120
G S+G +G S TG A + L K R + +E E + I+ GLP
Sbjct: 11 GTKSIGCAVGQSITGTA-------QALPAFKARDGIPDWNEIEKCLEEWKPQVIVVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + + A RL R G V L DE T+ EA + G K+ ++K
Sbjct: 64 NMDGTEQPLTLRAKKFANRLNGRF---GIPVELQDERLTTTEARSEIFGRGGYKALNKSK 120
Query: 181 TDAYAAVILLERYF 194
D +A ++LE +F
Sbjct: 121 VDGISAALILESWF 134
>gi|440716842|ref|ZP_20897345.1| Resolvase, holliday junction-type, YqgF-like protein
[Rhodopirellula baltica SWK14]
gi|436438035|gb|ELP31611.1| Resolvase, holliday junction-type, YqgF-like protein
[Rhodopirellula baltica SWK14]
Length = 173
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
Query: 48 LPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKG--FCVRPLTVLKLRGEKLELQ-LLE 104
+P T +D G VD G R G+A+ PL V + + + Q ++
Sbjct: 1 MPTTTTTAEDGFPATGRLASVDYGTVRIGVAICDPDWILASPLEVHPVSTPEKDAQYFID 60
Query: 105 IAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAV 164
+A+ E +++GLP DG E+ +S + R A L G L DE T+ A
Sbjct: 61 LAKSERIAAWVVGLPIHCDGGESDKSEESRKFAAWL---KETTGLPTRLFDERFTTVAAN 117
Query: 165 DRMINMGLSKSARQTKTDAYAAVILLERYF 194
++ ++ + + DA AA +LLE +
Sbjct: 118 AKIRQGKTTRKKTKQRVDAVAAQVLLESFL 147
>gi|32475183|ref|NP_868177.1| an endonuclease [Rhodopirellula baltica SH 1]
gi|421610853|ref|ZP_16052018.1| Resolvase, holliday junction-type, YqgF-like protein
[Rhodopirellula baltica SH28]
gi|62901008|sp|Q7UG74.1|RUVX_RHOBA RecName: Full=Putative Holliday junction resolvase
gi|32445724|emb|CAD78455.1| conserved hypothetical protein-putative an endonuclease
[Rhodopirellula baltica SH 1]
gi|408498307|gb|EKK02801.1| Resolvase, holliday junction-type, YqgF-like protein
[Rhodopirellula baltica SH28]
Length = 173
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
Query: 48 LPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSKG--FCVRPLTVLKLRGEKLELQ-LLE 104
+P T +D G VD G R G+A+ PL V + + + Q ++
Sbjct: 1 MPTTTTTAEDGFPATGRLASVDYGTVRIGVAICDPDWILASPLEVHPVSTPEKDAQYFID 60
Query: 105 IAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAV 164
+A+ E +++GLP DG E+ +S + R A L G L DE T+ A
Sbjct: 61 LAKSERIAAWVVGLPIHCDGGESDKSKESRKFAAWL---KETTGLPTRLFDERFTTVAAN 117
Query: 165 DRMINMGLSKSARQTKTDAYAAVILLERYF 194
++ ++ + + DA AA +LLE +
Sbjct: 118 AKIRQGKTTRKKTKQRVDAVAAQVLLESFL 147
>gi|418018822|ref|ZP_12658377.1| Holliday junction resolvase-like protein [Streptococcus salivarius
M18]
gi|421453380|ref|ZP_15902736.1| Resolvase [Streptococcus salivarius K12]
gi|345526264|gb|EGX29576.1| Holliday junction resolvase-like protein [Streptococcus salivarius
M18]
gi|400181689|gb|EJO15956.1| Resolvase [Streptococcus salivarius K12]
Length = 139
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 11/137 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + + ++K+ E E +L E+ + + ++F++GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGVEIIKIDEEAEEFGFDRLGELVKEYKVEKFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + +E P+ ++ ++ G V DE T+ +A +RM+ +S+ R+
Sbjct: 64 NMNNTEGPRVEASKAYGDKI---KEIFGIPVDYQDERLTTVQA-ERMLVEQADVSRGKRK 119
Query: 179 TKTDAYAAVILLERYFS 195
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYLD 136
>gi|323344259|ref|ZP_08084485.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC
33269]
gi|323094988|gb|EFZ37563.1| crossover junction endodeoxyribonuclease [Prevotella oralis ATCC
33269]
Length = 137
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 60/132 (45%), Gaps = 4/132 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + + +L L++ Q EE + +IG P +G
Sbjct: 5 LSIDYGRKRTGVAVTDPLQLIAGGLATVATSELFNYLMQYVQHEEVERIVIGKPMQTNGQ 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+ +V R R A + DE TS A +I+ GL K ARQ K D
Sbjct: 65 PSENLQRVEQFVDRW--RKAMPQIPIEYYDERFTSVIAQRVIIDSGLKKKARQNKALVDE 122
Query: 184 YAAVILLERYFS 195
+A I+LE + +
Sbjct: 123 ISATIILEDWMA 134
>gi|150396164|ref|YP_001326631.1| Holliday junction resolvase-like protein [Sinorhizobium medicae
WSM419]
gi|167013052|sp|A6U816.1|RUVX_SINMW RecName: Full=Putative Holliday junction resolvase
gi|150027679|gb|ABR59796.1| Holliday junction resolvase YqgF [Sinorhizobium medicae WSM419]
Length = 165
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 41/130 (31%), Positives = 67/130 (51%), Gaps = 10/130 (7%)
Query: 67 GVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSW 122
G+DLG GL++S + F P V++ ++ Q LL A++E+ F+IGLP +
Sbjct: 21 GLDLGTKTIGLSVSDLGRRFAT-PRDVIRRVKFGIDAQALLFFAEKEKVAAFVIGLPVNM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKT 181
DGSE P+ R+ + ER +L + R S A +R +I M +S+ R +
Sbjct: 80 DGSEGPRCQATRAFVRTM----GERTDIPSVLWDERLSTVAAERVLIEMDVSRKKRADRI 135
Query: 182 DAYAAVILLE 191
D+ AA +L+
Sbjct: 136 DSAAASFILQ 145
>gi|381184498|ref|ZP_09893096.1| Holliday junction resolvase-like protein [Listeriaceae bacterium
TTU M1-001]
gi|380315608|gb|EIA19129.1| Holliday junction resolvase-like protein [Listeriaceae bacterium
TTU M1-001]
Length = 138
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 34/134 (25%), Positives = 67/134 (50%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + + + + + + ++ E+A E ++ I+GLPK
Sbjct: 4 MGLDVGSKTVGVAISDALGWTAQGIETVAINEDAKQFGYNRIAELASTYEVEKIIVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ + + P++ + A L R G V L DE T+ A ++ +S+ R+
Sbjct: 64 NMNNTLGPRAESSKKYAEVLQNRT---GIEVLLWDERLTTQAAERTLLEADVSRKKRKQV 120
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 121 IDKLAAVMILQSYL 134
>gi|157825581|ref|YP_001493301.1| Holliday junction resolvase-like protein [Rickettsia akari str.
Hartford]
gi|167012754|sp|A8GN18.1|RUVX_RICAH RecName: Full=Putative Holliday junction resolvase
gi|157799539|gb|ABV74793.1| Holliday junction resolvase-like protein [Rickettsia akari str.
Hartford]
Length = 154
Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 35/129 (27%), Positives = 60/129 (46%), Gaps = 6/129 (4%)
Query: 66 LGVDLGLSRTGLALSKG--FCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D G + G+ALS PL T+ ++ + + LL I ++ + +IG+P
Sbjct: 20 IAIDYGSKKLGIALSNQERSIAMPLNTITEINKKIVITSLLSIVEKYKVCGVVIGMPIDM 79
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G+ T Q+N V A +YL DE T+ A + + + G+ + R D
Sbjct: 80 SGAVTEQTNMVMKFAEEFT---KSINLPIYLQDERLTTKAANNFLKSFGMKRKDRDNNDD 136
Query: 183 AYAAVILLE 191
A AA ++LE
Sbjct: 137 AVAASMILE 145
>gi|326773293|ref|ZP_08232576.1| Holliday junction resolvase [Actinomyces viscosus C505]
gi|326636523|gb|EGE37426.1| Holliday junction resolvase [Actinomyces viscosus C505]
Length = 171
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/145 (28%), Positives = 68/145 (46%), Gaps = 7/145 (4%)
Query: 60 WRGGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQL---LEIAQREETDEFII 116
+R G + D+G +R G+A + V+ LR ++ L +++ + E I+
Sbjct: 13 FRPGVRIAFDVGKARIGVARCDQDAILSFPVVTLRRDRYGADLDEAVDLVEEYGAFEVIV 72
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLPK G + + R A LA R +R V L+DE T+ A + GL + +
Sbjct: 73 GLPKHMGGGSSSSTRDARQWARDLASRLPQRVC-VRLVDERLTTVSAHRDLHAAGLKERS 131
Query: 177 RQTKTDAYAAVILLERYFS---MSG 198
+ D AAV++LE+ + MSG
Sbjct: 132 FRGIVDQAAAVVILEQAITTERMSG 156
>gi|312110120|ref|YP_003988436.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1]
gi|336234545|ref|YP_004587161.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius
C56-YS93]
gi|423719156|ref|ZP_17693338.1| holliday junction resolvase [Geobacillus thermoglucosidans
TNO-09.020]
gi|311215221|gb|ADP73825.1| Holliday junction resolvase YqgF [Geobacillus sp. Y4.1MC1]
gi|335361400|gb|AEH47080.1| Holliday junction resolvase YqgF [Geobacillus thermoglucosidasius
C56-YS93]
gi|383368059|gb|EID45334.1| holliday junction resolvase [Geobacillus thermoglucosidans
TNO-09.020]
Length = 138
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 68/136 (50%), Gaps = 10/136 (7%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLP 119
+LG+DLG G+A+S G+ + + + + E+ E +L EI + D ++G P
Sbjct: 3 ALGLDLGTKTLGVAVSDELGWTAQGIETISIDEEQGEYGLKRLREIIDEYKVDTIVVGFP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM-INMGLSKSARQ 178
K+ +G+ P++ + A L E V L DE R S A +RM I +S+ R+
Sbjct: 63 KNMNGTVGPRAEASQRFAKILE---QEFALPVILWDE-RLSTMAAERMLIAADVSRKKRR 118
Query: 179 TKTDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 119 KVIDKMAAVVILQSYL 134
>gi|148256069|ref|YP_001240654.1| Holliday junction resolvase-like protein [Bradyrhizobium sp. BTAi1]
gi|167012697|sp|A5EKQ4.1|RUVX_BRASB RecName: Full=Putative Holliday junction resolvase
gi|146408242|gb|ABQ36748.1| putative Holliday junction resolvase [Bradyrhizobium sp. BTAi1]
Length = 161
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/133 (30%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 63 GFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLP 119
G +G+DLG G+A+S + T+ + + +LL I+ + F++GLP
Sbjct: 19 GALVGLDLGTKTIGVAVSDPDRRLATGVETIQRKAFKADAARLLAISSERKVVGFVLGLP 78
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQ 178
+ DGSE P++ R+ A LA + L DE R S AV+R +I M +S++ R
Sbjct: 79 INMDGSEGPRAQSTRAFARNLANLT---DLPIGLWDE-RLSTAAVERELIGMDVSRARRA 134
Query: 179 TKTDAYAAVILLE 191
D +AA+ +L+
Sbjct: 135 EVIDTHAAIFILQ 147
>gi|434391867|ref|YP_007126814.1| Holliday junction resolvase [Gloeocapsa sp. PCC 7428]
gi|428263708|gb|AFZ29654.1| Holliday junction resolvase [Gloeocapsa sp. PCC 7428]
Length = 165
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 47/171 (27%), Positives = 82/171 (47%), Gaps = 19/171 (11%)
Query: 27 HLNRTRNFGQRIGALSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALS--KGFC 84
HL+ T N +V+ + N +RR+ S +LG+D+G R G+A G
Sbjct: 6 HLHVTSNR-------QTVDSAMENISRRRFIS------ALGLDIGRKRIGVAGCDGTGLI 52
Query: 85 VRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVR 143
LT ++ + L+L QL + Q ++GLP S DGS Q+ +++ +A R A +
Sbjct: 53 ASGLTTIERKSFDLDLAQLKSLVQERRVQVLVVGLPYSMDGSLGKQAQEIQKLASRYA-Q 111
Query: 144 AAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDAYAAVILLERYF 194
A + + +DE TS +A + +S S + D AA ++L+++
Sbjct: 112 ALQ--LPLEYIDERLTSFQAEQLLQAQNISPSRNKGLIDRKAAALILQQWL 160
>gi|410866327|ref|YP_006980938.1| Putative Holliday junction resolvase [Propionibacterium
acidipropionici ATCC 4875]
gi|410822968|gb|AFV89583.1| Putative Holliday junction resolvase [Propionibacterium
acidipropionici ATCC 4875]
Length = 148
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/137 (29%), Positives = 61/137 (44%), Gaps = 5/137 (3%)
Query: 63 GFSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPK 120
G + VD G +R G+A +G P+ + R + +L+EI E E I+GLP
Sbjct: 5 GTRIAVDWGKARIGVAACDPRGILAYPVETVATRDRPIA-RLVEIIAEYEPVEIIMGLPV 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E + VR RLA A V +DE T+ A + G +++
Sbjct: 64 ALDGTERIAARDVRRAGQRLAEAVAP--IPVRYVDERMTTRTAARALHEAGRDARHQRSV 121
Query: 181 TDAYAAVILLERYFSMS 197
D AAV +LE +
Sbjct: 122 IDQAAAVAILEHVLEQA 138
>gi|331701290|ref|YP_004398249.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929]
gi|329128633|gb|AEB73186.1| Holliday junction resolvase [Lactobacillus buchneri NRRL B-30929]
Length = 144
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/145 (26%), Positives = 75/145 (51%), Gaps = 11/145 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLELQL---LEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + + ++++ + E L E+ ++ + D F++GLPK
Sbjct: 4 MGLDVGSKTVGVAVSDQLGWTSQGVEIIRIDEDNKEFGLDRVSELVKKYQVDGFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN--MGLSKSARQ 178
+ + S P++ + RL + V DE T+ EA RM+ +S++ R+
Sbjct: 64 NMNNSLGPRAEASQQYGKRLEDKF---NLPVDFEDERLTTVEA-QRMLTEEADVSRAKRK 119
Query: 179 TKTDAYAAVILLERYFSMSGQGTEI 203
D AA ++L+ Y +G+ T+I
Sbjct: 120 KVIDKLAAGLILQNYLDRNGKLTKI 144
>gi|385813223|ref|YP_005849616.1| Putative Holliday junction resolvase [Lactobacillus helveticus H10]
gi|403514463|ref|YP_006655283.1| Holliday junction resolvase-like protein [Lactobacillus helveticus
R0052]
gi|323465942|gb|ADX69629.1| Putative Holliday junction resolvase [Lactobacillus helveticus H10]
gi|403079901|gb|AFR21479.1| Holliday junction resolvase-like protein [Lactobacillus helveticus
R0052]
Length = 142
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/138 (26%), Positives = 69/138 (50%), Gaps = 10/138 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G + L +K+ K L ++ ++ E D F++GLPK
Sbjct: 4 LGLDIGSKTVGVAVSDELGITAQKLETIKIDETKYNFGMRPLKKLVRQYEVDGFVLGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI-NMGL-SKSARQ 178
+ DG+ + ++ RL + G V+ DE T+ E+ ++ + G+ + R+
Sbjct: 64 NMDGTSGASVARSKAYGKRLEEKF---GLPVHYSDERLTTIESRRVLVEDAGIHDRKKRK 120
Query: 179 TKTDAYAAVILLERYFSM 196
D AAV++L+ Y +
Sbjct: 121 QVIDQMAAVLILQNYLDL 138
>gi|334344220|ref|YP_004552772.1| Holliday junction resolvase [Sphingobium chlorophenolicum L-1]
gi|334100842|gb|AEG48266.1| Holliday junction resolvase [Sphingobium chlorophenolicum L-1]
Length = 156
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/140 (30%), Positives = 74/140 (52%), Gaps = 9/140 (6%)
Query: 56 KDSLWRGGFSLGVDLGLSRTGLALS-KGFCVR--PLTVLKLRGEKLELQLLEIAQREETD 112
+++L GG +G+D+G GLAL G+ + TV + + K ++ L ++++
Sbjct: 12 REALPHGGRLIGLDVGTKTIGLALCDAGWSIASPAHTVSRGKFSKDKIALAAFMEQQQVK 71
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMG 171
+IGLP + DGSE+P+S R+ GR A+ G + DE R S +AV R ++
Sbjct: 72 GVVIGLPLNLDGSESPRSQASRAF-GR---NIADLGLPILFWDE-RWSTQAVTRTLLEAD 126
Query: 172 LSKSARQTKTDAYAAVILLE 191
S++ R+ D AA +L+
Sbjct: 127 ASRARREELVDKLAASYILQ 146
>gi|69245163|ref|ZP_00603287.1| Conserved hypothetical protein 250 [Enterococcus faecium DO]
gi|257879617|ref|ZP_05659270.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257883923|ref|ZP_05663576.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257890284|ref|ZP_05669937.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|260559720|ref|ZP_05831900.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|261208764|ref|ZP_05923201.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289565552|ref|ZP_06445999.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|293560123|ref|ZP_06676627.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|294614420|ref|ZP_06694336.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636]
gi|294617987|ref|ZP_06697592.1| conserved hypothetical protein [Enterococcus faecium E1679]
gi|314939503|ref|ZP_07846735.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a04]
gi|314944177|ref|ZP_07850822.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133C]
gi|314949753|ref|ZP_07853063.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0082]
gi|314951904|ref|ZP_07854936.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133A]
gi|314994470|ref|ZP_07859749.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133B]
gi|314997874|ref|ZP_07862775.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a01]
gi|383329483|ref|YP_005355367.1| Holliday junction resolvase-like protein [Enterococcus faecium
Aus0004]
gi|389869330|ref|YP_006376753.1| crossover junction endodeoxyribonuclease [Enterococcus faecium DO]
gi|415895735|ref|ZP_11550656.1| Putative Holliday junction resolvase [Enterococcus faecium E4453]
gi|424790858|ref|ZP_18217363.1| RNAse H domain protein, YqgF family [Enterococcus faecium V689]
gi|424834603|ref|ZP_18259304.1| RNAse H domain protein, YqgF family [Enterococcus faecium R501]
gi|424867103|ref|ZP_18290915.1| RNAse H domain protein, YqgF family [Enterococcus faecium R497]
gi|424954703|ref|ZP_18369590.1| RNAse H domain protein, YqgF family [Enterococcus faecium R494]
gi|424962773|ref|ZP_18377080.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1190]
gi|424970167|ref|ZP_18383697.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1139]
gi|424973544|ref|ZP_18386819.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1137]
gi|424977993|ref|ZP_18390953.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1123]
gi|424979978|ref|ZP_18392800.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV99]
gi|424984338|ref|ZP_18396875.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV69]
gi|424986721|ref|ZP_18399127.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV38]
gi|424991350|ref|ZP_18403508.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV26]
gi|425006753|ref|ZP_18417914.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV1]
gi|425014631|ref|ZP_18425299.1| RNAse H domain protein, YqgF family [Enterococcus faecium E417]
gi|425020375|ref|ZP_18430683.1| RNAse H domain protein, YqgF family [Enterococcus faecium C497]
gi|425025345|ref|ZP_18434537.1| RNAse H domain protein, YqgF family [Enterococcus faecium C1904]
gi|425036313|ref|ZP_18441079.1| RNAse H domain protein, YqgF family [Enterococcus faecium 514]
gi|425038073|ref|ZP_18442704.1| RNAse H domain protein, YqgF family [Enterococcus faecium 513]
gi|425043668|ref|ZP_18447882.1| RNAse H domain protein, YqgF family [Enterococcus faecium 511]
gi|425044245|ref|ZP_18448418.1| RNAse H domain protein, YqgF family [Enterococcus faecium 510]
gi|425048330|ref|ZP_18452238.1| RNAse H domain protein, YqgF family [Enterococcus faecium 509]
gi|425052670|ref|ZP_18456262.1| RNAse H domain protein, YqgF family [Enterococcus faecium 506]
gi|425060775|ref|ZP_18464053.1| RNAse H domain protein, YqgF family [Enterococcus faecium 503]
gi|427396599|ref|ZP_18889358.1| RNAse H-fold protein YqgF [Enterococcus durans FB129-CNAB-4]
gi|430822953|ref|ZP_19441528.1| RNAse H-fold protein YqgF [Enterococcus faecium E0120]
gi|430831174|ref|ZP_19449227.1| RNAse H-fold protein YqgF [Enterococcus faecium E0333]
gi|430847938|ref|ZP_19465771.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E1133]
gi|430849157|ref|ZP_19466938.1| RNAse H-fold protein YqgF [Enterococcus faecium E1185]
gi|430852115|ref|ZP_19469850.1| RNAse H-fold protein YqgF [Enterococcus faecium E1258]
gi|430855342|ref|ZP_19473051.1| RNAse H-fold protein YqgF [Enterococcus faecium E1392]
gi|430865692|ref|ZP_19481267.1| RNAse H-fold protein YqgF [Enterococcus faecium E1574]
gi|430946170|ref|ZP_19485646.1| RNAse H-fold protein YqgF [Enterococcus faecium E1576]
gi|431002097|ref|ZP_19488688.1| RNAse H-fold protein YqgF [Enterococcus faecium E1578]
gi|431251026|ref|ZP_19503960.1| RNAse H-fold protein YqgF [Enterococcus faecium E1623]
gi|431374624|ref|ZP_19510312.1| RNAse H-fold protein YqgF [Enterococcus faecium E1627]
gi|431415559|ref|ZP_19512362.1| RNAse H-fold protein YqgF [Enterococcus faecium E1630]
gi|431546222|ref|ZP_19518847.1| RNAse H-fold protein YqgF [Enterococcus faecium E1731]
gi|431638699|ref|ZP_19523326.1| RNAse H-fold protein YqgF [Enterococcus faecium E1904]
gi|431742690|ref|ZP_19531575.1| RNAse H-fold protein YqgF [Enterococcus faecium E2071]
gi|431748859|ref|ZP_19537612.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E2297]
gi|431755301|ref|ZP_19543955.1| RNAse H-fold protein YqgF [Enterococcus faecium E2883]
gi|431759758|ref|ZP_19548368.1| RNAse H-fold protein YqgF [Enterococcus faecium E3346]
gi|431771279|ref|ZP_19559665.1| RNAse H-fold protein YqgF [Enterococcus faecium E1644]
gi|431772719|ref|ZP_19561057.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E2369]
gi|68196006|gb|EAN10439.1| Conserved hypothetical protein 250 [Enterococcus faecium DO]
gi|257813845|gb|EEV42603.1| conserved hypothetical protein [Enterococcus faecium 1,230,933]
gi|257819761|gb|EEV46909.1| conserved hypothetical protein [Enterococcus faecium 1,231,501]
gi|257826644|gb|EEV53270.1| conserved hypothetical protein [Enterococcus faecium 1,231,410]
gi|260074388|gb|EEW62710.1| conserved hypothetical protein [Enterococcus faecium C68]
gi|260077266|gb|EEW64986.1| conserved hypothetical protein [Enterococcus faecium TC 6]
gi|289162634|gb|EFD10487.1| conserved hypothetical protein [Enterococcus faecium D344SRF]
gi|291592728|gb|EFF24321.1| hypothetical protein EfmE1636_0526 [Enterococcus faecium E1636]
gi|291595796|gb|EFF27084.1| conserved hypothetical protein [Enterococcus faecium E1679]
gi|291605990|gb|EFF35420.1| conserved hypothetical protein [Enterococcus faecium E1162]
gi|313588099|gb|EFR66944.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a01]
gi|313591125|gb|EFR69970.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133B]
gi|313595938|gb|EFR74783.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133A]
gi|313597239|gb|EFR76084.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133C]
gi|313641204|gb|EFS05784.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0133a04]
gi|313643826|gb|EFS08406.1| conserved hypothetical protein TIGR00250 [Enterococcus faecium
TX0082]
gi|364091456|gb|EHM33921.1| Putative Holliday junction resolvase [Enterococcus faecium E4453]
gi|378939177|gb|AFC64249.1| Holliday junction resolvase-like protein [Enterococcus faecium
Aus0004]
gi|388534579|gb|AFK59771.1| crossover junction endodeoxyribonuclease [Enterococcus faecium DO]
gi|402920340|gb|EJX40861.1| RNAse H domain protein, YqgF family [Enterococcus faecium V689]
gi|402922242|gb|EJX42641.1| RNAse H domain protein, YqgF family [Enterococcus faecium R501]
gi|402935917|gb|EJX55125.1| RNAse H domain protein, YqgF family [Enterococcus faecium R494]
gi|402938154|gb|EJX57181.1| RNAse H domain protein, YqgF family [Enterococcus faecium R497]
gi|402951286|gb|EJX69233.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1190]
gi|402958325|gb|EJX75641.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1137]
gi|402962474|gb|EJX79412.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1139]
gi|402963601|gb|EJX80456.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1123]
gi|402967683|gb|EJX84216.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV99]
gi|402969163|gb|EJX85599.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV69]
gi|402975873|gb|EJX91800.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV38]
gi|402977061|gb|EJX92908.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV26]
gi|402996511|gb|EJY10891.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV1]
gi|402998061|gb|EJY12339.1| RNAse H domain protein, YqgF family [Enterococcus faecium E417]
gi|403006769|gb|EJY20389.1| RNAse H domain protein, YqgF family [Enterococcus faecium C1904]
gi|403009367|gb|EJY22820.1| RNAse H domain protein, YqgF family [Enterococcus faecium C497]
gi|403015132|gb|EJY28070.1| RNAse H domain protein, YqgF family [Enterococcus faecium 514]
gi|403018314|gb|EJY31006.1| RNAse H domain protein, YqgF family [Enterococcus faecium 511]
gi|403020220|gb|EJY32772.1| RNAse H domain protein, YqgF family [Enterococcus faecium 513]
gi|403030345|gb|EJY42039.1| RNAse H domain protein, YqgF family [Enterococcus faecium 510]
gi|403030819|gb|EJY42474.1| RNAse H domain protein, YqgF family [Enterococcus faecium 509]
gi|403033447|gb|EJY44949.1| RNAse H domain protein, YqgF family [Enterococcus faecium 506]
gi|403042261|gb|EJY53224.1| RNAse H domain protein, YqgF family [Enterococcus faecium 503]
gi|425723269|gb|EKU86160.1| RNAse H-fold protein YqgF [Enterococcus durans FB129-CNAB-4]
gi|430442882|gb|ELA52903.1| RNAse H-fold protein YqgF [Enterococcus faecium E0120]
gi|430482045|gb|ELA59186.1| RNAse H-fold protein YqgF [Enterococcus faecium E0333]
gi|430536314|gb|ELA76690.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E1133]
gi|430538003|gb|ELA78302.1| RNAse H-fold protein YqgF [Enterococcus faecium E1185]
gi|430542697|gb|ELA82805.1| RNAse H-fold protein YqgF [Enterococcus faecium E1258]
gi|430547348|gb|ELA87284.1| RNAse H-fold protein YqgF [Enterococcus faecium E1392]
gi|430552757|gb|ELA92483.1| RNAse H-fold protein YqgF [Enterococcus faecium E1574]
gi|430558642|gb|ELA98054.1| RNAse H-fold protein YqgF [Enterococcus faecium E1576]
gi|430562217|gb|ELB01468.1| RNAse H-fold protein YqgF [Enterococcus faecium E1578]
gi|430578933|gb|ELB17480.1| RNAse H-fold protein YqgF [Enterococcus faecium E1623]
gi|430583248|gb|ELB21637.1| RNAse H-fold protein YqgF [Enterococcus faecium E1627]
gi|430589003|gb|ELB27160.1| RNAse H-fold protein YqgF [Enterococcus faecium E1630]
gi|430591541|gb|ELB29570.1| RNAse H-fold protein YqgF [Enterococcus faecium E1731]
gi|430602178|gb|ELB39757.1| RNAse H-fold protein YqgF [Enterococcus faecium E1904]
gi|430607924|gb|ELB45220.1| RNAse H-fold protein YqgF [Enterococcus faecium E2071]
gi|430612555|gb|ELB49591.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E2297]
gi|430617301|gb|ELB54175.1| RNAse H-fold protein YqgF [Enterococcus faecium E2883]
gi|430625660|gb|ELB62275.1| RNAse H-fold protein YqgF [Enterococcus faecium E3346]
gi|430633804|gb|ELB69958.1| RNAse H-fold protein YqgF [Enterococcus faecium E1644]
gi|430637798|gb|ELB73797.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E2369]
Length = 143
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + + ++++ + E +L E+ + E D F++GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + S P++ S ++ + V DE T+ +A +RM+ S++ R+
Sbjct: 64 NMNNSIGPRAEASMSYGEKIKELFS---LPVDYQDERLTTVQA-ERMLVEQANTSRAKRK 119
Query: 179 TKTDAYAAVILLERYFSMSGQ 199
D AAV++L+ Y SG+
Sbjct: 120 KVIDKLAAVMILQNYLDGSGK 140
>gi|288801321|ref|ZP_06406775.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str.
F0039]
gi|288331704|gb|EFC70188.1| Holliday junction resolvase [Prevotella sp. oral taxon 299 str.
F0039]
Length = 137
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/131 (29%), Positives = 56/131 (42%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTGLA++ + + + L L ++E + IIGLP+ +G
Sbjct: 5 LAIDYGQKRTGLAVTDTLQLIANGLDTIPTHTLYEFLCAYIEKEPVERIIIGLPRQTNGL 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+ ++ R Y DE TS A MI+ GL K ARQ K D
Sbjct: 65 PSENMKRIEPFVARWKKHQPNVPIEYY--DERFTSVLAHRAMIDGGLKKKARQDKALVDK 122
Query: 184 YAAVILLERYF 194
+A I+L+ Y
Sbjct: 123 ISATIILQDYL 133
>gi|23015713|ref|ZP_00055482.1| COG0816: Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Magnetospirillum magnetotacticum MS-1]
Length = 159
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 41/137 (29%), Positives = 61/137 (44%), Gaps = 6/137 (4%)
Query: 58 SLWRGGFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEF 114
SL R LG+DLG GLALS + T+ + + K QLL I +++
Sbjct: 16 SLSRDQRLLGLDLGSKTIGLALSDVSRTIATPFDTIRRTKFTKDAEQLLAIVDKQDVGGL 75
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSK 174
++GLP DG E P+ VRS A L A R + DE +++ ++ S+
Sbjct: 76 VLGLPVEMDGFEGPRCQSVRSFAANL---ARLRDMPIAYWDERLSTSAVTRTLLEADSSR 132
Query: 175 SARQTKTDAYAAVILLE 191
R D AA +L+
Sbjct: 133 KRRAEVVDKMAAAYILQ 149
>gi|365905352|ref|ZP_09443111.1| Holliday junction resolvase-like protein [Lactobacillus
versmoldensis KCTC 3814]
Length = 144
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/143 (27%), Positives = 74/143 (51%), Gaps = 11/143 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G+ + + ++++ +K + +L EI ++ +IGLPK
Sbjct: 4 LGLDVGSRTVGVAVSDLLGWTAQGVEIIRINEDKEDFGLDRLEEIINEKKATGVVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + +E P++ K R G++ E V DE T+ +A +RM+ +S+ R+
Sbjct: 64 NMNNTEGPRAEKSREY-GKMVTERFE--LPVDFTDERLTTVQA-ERMLVDEANVSRRKRK 119
Query: 179 TKTDAYAAVILLERYFSMSGQGT 201
D AA ++L+ Y G+ T
Sbjct: 120 KVIDKIAAEMILQNYLDAKGKLT 142
>gi|150015990|ref|YP_001308244.1| Holliday junction resolvase-like protein [Clostridium beijerinckii
NCIMB 8052]
gi|189046092|sp|A6LSF8.1|RUVX_CLOB8 RecName: Full=Putative Holliday junction resolvase
gi|149902455|gb|ABR33288.1| Holliday junction resolvase YqgF [Clostridium beijerinckii NCIMB
8052]
Length = 138
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 64/134 (47%), Gaps = 6/134 (4%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLT-VLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
LG+DLG G+A+S GF + LT V + EK ++ + + +IGLPK+
Sbjct: 4 LGLDLGSKTIGVAVSDPLGFTAQGLTTVRRTNKEKDIAEIKKFCDEYDAKVIVIGLPKNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G+ P S ++ G+ V E V DE T+ A M+ LS++ R+ D
Sbjct: 64 NGTIGP-SGEIAMAFGK--VIEEELNVEVKFWDERLTTVAAHKAMLEADLSRNKRKKIVD 120
Query: 183 AYAAVILLERYFSM 196
A+ +L+ Y M
Sbjct: 121 KVASTYILQGYLDM 134
>gi|393718811|ref|ZP_10338738.1| putative Holliday junction resolvase [Sphingomonas echinoides ATCC
14820]
Length = 154
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 8/134 (5%)
Query: 62 GGFSLGVDLGLSRTGLALSKG---FCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGL 118
GG +G+D+G G AL F L + + + +K +L L E+ ++ +IGL
Sbjct: 16 GGRLIGLDVGTKTIGTALCDAGWSFASPALLIRRTKFQKDKLALAELIAAQQVKGIVIGL 75
Query: 119 PKSW-DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSAR 177
P + DGSE+P+S R+ A + A+ ++L DE ++ +I S++ R
Sbjct: 76 PLNLSDGSESPRSQSSRAFARNM----ADLCLPIFLQDERWSTVAVTRTLIEQDASRAKR 131
Query: 178 QTKTDAYAAVILLE 191
D AA +L+
Sbjct: 132 AELVDKMAAAYILQ 145
>gi|338974884|ref|ZP_08630240.1| putative Holliday junction resolvase [Bradyrhizobiaceae bacterium
SG-6C]
gi|338231979|gb|EGP07113.1| putative Holliday junction resolvase [Bradyrhizobiaceae bacterium
SG-6C]
Length = 163
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/133 (31%), Positives = 68/133 (51%), Gaps = 8/133 (6%)
Query: 63 GFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLP 119
G +G+DLG G+A+S + T+ + +LL ++ + FI+GLP
Sbjct: 19 GALIGLDLGTKTIGVAVSDPDRKLATGIETIQRKTFTADAARLLALSGERQVVGFILGLP 78
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQ 178
+ DGSE P++ R+ A A R E + L DE R S AV+R +I M +S++ R
Sbjct: 79 INMDGSEGPRAQSTRAFARNFA-RQTELA--IGLWDE-RLSTVAVERELIGMDMSRARRA 134
Query: 179 TKTDAYAAVILLE 191
D +AA+ +L+
Sbjct: 135 KVIDEHAAIFILQ 147
>gi|319946059|ref|ZP_08020308.1| crossover junction endodeoxyribonuclease [Streptococcus australis
ATCC 700641]
gi|417919270|ref|ZP_12562805.1| RNAse H domain protein, YqgF family [Streptococcus australis ATCC
700641]
gi|319747867|gb|EFW00112.1| crossover junction endodeoxyribonuclease [Streptococcus australis
ATCC 700641]
gi|342833960|gb|EGU68239.1| RNAse H domain protein, YqgF family [Streptococcus australis ATCC
700641]
Length = 139
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/137 (25%), Positives = 70/137 (51%), Gaps = 13/137 (9%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++++ EK E +L E+ + D F++GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIQIDEEKGEFGLDRLSELVKEYRVDRFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYL-LDEHRTSAEAVDRMI--NMGLSKSAR 177
+ + + P+ ++ RL E + + + + R + A +RM+ +S++ R
Sbjct: 64 NMNNTSGPRVEASQAYGKRL-----EELFNLPVEYQDERLTTVAAERMLIEQADISRNKR 118
Query: 178 QTKTDAYAAVILLERYF 194
+ D AA ++L+ Y
Sbjct: 119 KKVIDKLAAQLILQNYL 135
>gi|110832974|ref|YP_691833.1| endonuclease, Holliday junction resolvase [Alcanivorax borkumensis
SK2]
gi|118597202|sp|Q0VTI2.1|RUVX_ALCBS RecName: Full=Putative Holliday junction resolvase
gi|110646085|emb|CAL15561.1| endonuclease, possible Holliday junction resolvase [Alcanivorax
borkumensis SK2]
Length = 133
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 66/133 (49%), Gaps = 11/133 (8%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
L D G + G+A PL L + + + +E E + ++GLP +
Sbjct: 3 LAFDYGTQKIGVASGNELLGTATPLKALPCKNTQPNWDDIAALLKEWEPEALVVGLPLNM 62
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGS++ + + R A RL R G +V+L+DE ++ EA +R G+ K+ ++ D
Sbjct: 63 DGSDSESTVRARKFANRLHGRF---GKKVWLIDERLSTREARER---TGIKKA--DSRVD 114
Query: 183 AYAAVILLERYFS 195
+ AAVI+ E +F+
Sbjct: 115 SMAAVIIAEGFFA 127
>gi|219847050|ref|YP_002461483.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485]
gi|254767505|sp|B8GC73.1|RUVX_CHLAD RecName: Full=Putative Holliday junction resolvase
gi|219541309|gb|ACL23047.1| Holliday junction resolvase YqgF [Chloroflexus aggregans DSM 9485]
Length = 142
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 60/132 (45%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFIIGLPKSW 122
LG+D+G R G+A+S + PLT + E+ Q+ + ++GLP +
Sbjct: 7 LGLDVGERRIGVAISDVEARIAAPLTTIPAHPPERAIAQIARLVAERGVRRVVVGLPLTM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
G PQ+ ++ LA A V + DE TS A + N+G+ + + + D
Sbjct: 67 RGEHGPQAAAIQRFVDALA---AVLNCPVEMFDERLTSVAAEQMLRNLGVKPAKIKEQID 123
Query: 183 AYAAVILLERYF 194
AA I+L+ Y
Sbjct: 124 QVAASIILQDYL 135
>gi|428315916|ref|YP_007113798.1| Holliday junction resolvase [Oscillatoria nigro-viridis PCC 7112]
gi|428239596|gb|AFZ05382.1| Holliday junction resolvase [Oscillatoria nigro-viridis PCC 7112]
Length = 152
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 65/133 (48%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALSKG---FCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKS 121
+LG+D+GL R G+A G T+++ ++ L E+ + + GLP S
Sbjct: 10 ALGLDIGLKRVGIAGCDGTGLIATGITTLVRSSFDRDVAYLRELVRERRVQILVAGLPYS 69
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
G Q+ +V+ A R+A RA E + +DE TS EA + M G+S S +
Sbjct: 70 LSGELGAQARQVQKYANRIA-RALE--IPLEYVDERLTSVEAEELMKTQGISPSQNKGAI 126
Query: 182 DAYAAVILLERYF 194
D AA ++L+++
Sbjct: 127 DRKAAALILQQWL 139
>gi|392988840|ref|YP_006487433.1| Holliday junction resolvase-like protein [Enterococcus hirae ATCC
9790]
gi|392336260|gb|AFM70542.1| Holliday junction resolvase-like protein [Enterococcus hirae ATCC
9790]
Length = 143
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/141 (25%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + + ++++ E E +L E+ + E D F++GLPK
Sbjct: 4 MGLDVGSKTVGIAVSDPFGWTAQGVEIIRIDEEAEEFGFDRLKELVDQYEVDRFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P++ + ++ + V DE T+ +A +RM+ S++ R+
Sbjct: 64 NMNNTIGPRAESSMAYGEKIKELFS---LPVEYQDERLTTVQA-ERMLVEQANTSRAKRK 119
Query: 179 TKTDAYAAVILLERYFSMSGQ 199
D AAV++L+ Y SG+
Sbjct: 120 KVIDKLAAVMILQNYLDGSGK 140
>gi|170781161|ref|YP_001709493.1| Holliday junction resolvase-like protein [Clavibacter michiganensis
subsp. sepedonicus]
gi|189046091|sp|B0REK3.1|RUVX_CLAMS RecName: Full=Putative Holliday junction resolvase
gi|169155729|emb|CAQ00850.1| conserved hypothetical protein [Clavibacter michiganensis subsp.
sepedonicus]
Length = 161
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 63/139 (45%), Gaps = 7/139 (5%)
Query: 60 WRGGFSLGVDLGLSRTGLALS--KGFCVRPLTVL--KLRGEKLELQLLEIAQREETDEFI 115
R G L VD+G +R GLA S G P+ + G ++LE+A + E +
Sbjct: 1 MRVGSRLAVDVGKARIGLARSDPHGLIATPVETVPRDAAGSADVRRILEVAAEIDCTELV 60
Query: 116 IGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKS 175
+GLP + G T ++ A RLA A E RV L+DE ++ A + G
Sbjct: 61 VGLPLALSGRATASTDDAEGFARRLA-DATE--IRVRLVDERLSTVSAQGALRASGRGSR 117
Query: 176 ARQTKTDAYAAVILLERYF 194
++ D AAVI+L+
Sbjct: 118 KQKPVIDQVAAVIILQHAL 136
>gi|163759344|ref|ZP_02166430.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43]
gi|162283748|gb|EDQ34033.1| hypothetical protein HPDFL43_06250 [Hoeflea phototrophica DFL-43]
Length = 162
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/129 (30%), Positives = 64/129 (49%), Gaps = 8/129 (6%)
Query: 67 GVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLE-LQLLEIAQREETDEFIIGLPKSWD 123
G+DLG GLA+S P V+K R L+ + LL +R++ +IGLP + D
Sbjct: 21 GLDLGTKTIGLAVSDLSRSLASPRPVIKRRKFTLDAIDLLTALKRDQVGAVVIGLPVNMD 80
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQTKTD 182
GSE P+ R+ + E+ ++ + R S A +R +I M +S+ R + D
Sbjct: 81 GSEGPRVQATRAFVRNM----IEKTDLPFVFWDERLSTVAAERALIEMDVSRKKRAERID 136
Query: 183 AYAAVILLE 191
+ AA +L+
Sbjct: 137 SAAASFILQ 145
>gi|239622021|ref|ZP_04665052.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296454024|ref|YP_003661167.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
longum JDM301]
gi|239515212|gb|EEQ55079.1| holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis CCUG 52486]
gi|296183455|gb|ADH00337.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
longum JDM301]
Length = 156
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLEL--QLLEIAQREETDEFIIGLPKS 121
LGVDLG +R GLALS P + + G+ ++L + + E D I+GLP
Sbjct: 8 LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQ 67
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGW----------RVYLLDEHRTSAEAVDRMINMG 171
DG+E + K R A L R +V L+DE T+ A ++
Sbjct: 68 MDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAH 127
Query: 172 LSKSARQTKTDAYAAVILLE 191
+ + + D +AV++L+
Sbjct: 128 KASNKHRPVVDQQSAVVILQ 147
>gi|357059888|ref|ZP_09120664.1| hypothetical protein HMPREF9332_00221 [Alloprevotella rava F0323]
gi|355377155|gb|EHG24384.1| hypothetical protein HMPREF9332_00221 [Alloprevotella rava F0323]
Length = 138
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/130 (26%), Positives = 59/130 (45%), Gaps = 4/130 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + + +KL + L + ++E + I+GLP +G
Sbjct: 4 LSIDYGKRRTGIAVTDSMQIIANGLTTVDTKKLFVFLKDYFEKESVERVILGLPTQTNGQ 63
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+ +VR A + Y DE TS A M+ G+ K R+ K D
Sbjct: 64 PSENQQRVRLFAANFTKQFPHIPLEFY--DERFTSVLAHQTMLASGIGKQRRRDKALVDE 121
Query: 184 YAAVILLERY 193
+A I+L+ Y
Sbjct: 122 ISACIILQSY 131
>gi|350553565|ref|ZP_08922735.1| Holliday junction resolvase [Thiorhodospira sibirica ATCC 700588]
gi|349790320|gb|EGZ44236.1| Holliday junction resolvase [Thiorhodospira sibirica ATCC 700588]
Length = 141
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/136 (29%), Positives = 66/136 (48%), Gaps = 9/136 (6%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQREETDE-FIIGLPKSW 122
LG D G R G+A+ + PL V+ R + Q L+ ++ E +IG
Sbjct: 5 LGFDYGTRRIGVAVGNRYTQSANPLEVVANRASGPDWQALDALVKDWQPEGLVIGWVSYA 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT- 181
DG E P + ++ A +L R G +Y ++E+ +SAEA R+ +++KT
Sbjct: 65 DGREHPLARAIQRFADQLGQR---YGLPLYRVNEYASSAEASARLEAARQHTGRKRSKTP 121
Query: 182 --DAYAAVILLERYFS 195
D AA +LLE++F+
Sbjct: 122 ALDPLAASLLLEQWFA 137
>gi|328954563|ref|YP_004371897.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109]
gi|328454887|gb|AEB10716.1| Holliday junction resolvase [Desulfobacca acetoxidans DSM 11109]
Length = 144
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 66/134 (49%), Gaps = 10/134 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL-QLLEIAQREETDEFIIGLPKSW 122
LG+DLG R G+ALS G+ + LTV+ G +L ++LE+ ++ E E +IGLP+
Sbjct: 4 LGLDLGSKRIGIALSDALGWTAQGLTVIHRAGRARDLARVLELVKKYEVQEIVIGLPRHL 63
Query: 123 DG--SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
DG E + + R + W DE T+ +A ++ LS+ R+
Sbjct: 64 DGRLGEGAEEALAWAAELREHLHIPVHTW-----DERLTTLQAERVLLQADLSRRKRRQV 118
Query: 181 TDAYAAVILLERYF 194
D AA ++L+ +
Sbjct: 119 IDKLAAGLILQAFL 132
>gi|418966157|ref|ZP_13517906.1| RNAse H domain protein, YqgF family [Streptococcus constellatus
subsp. constellatus SK53]
gi|383340811|gb|EID19099.1| RNAse H domain protein, YqgF family [Streptococcus constellatus
subsp. constellatus SK53]
Length = 139
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/137 (24%), Positives = 71/137 (51%), Gaps = 13/137 (9%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++ + E+ E +L E+ Q + D+F++GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIPINEEQEEFGFERLTELIQEYKVDKFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYL-LDEHRTSAEAVDRMI--NMGLSKSAR 177
+ + + P+ ++ ++ E+ + + + + R + A +RM+ +S+ R
Sbjct: 64 NMNNTSGPRVEASQAYGTKI-----EQLFHLPVEYQDERLTTVAAERMLIEQADVSRKKR 118
Query: 178 QTKTDAYAAVILLERYF 194
+ D AA ++L+ Y
Sbjct: 119 KKVIDKLAAQLILQNYL 135
>gi|352518044|ref|YP_004887361.1| putative Holliday junction resolvase [Tetragenococcus halophilus
NBRC 12172]
gi|348602151|dbj|BAK95197.1| putative Holliday junction resolvase [Tetragenococcus halophilus
NBRC 12172]
Length = 140
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/139 (25%), Positives = 76/139 (54%), Gaps = 15/139 (10%)
Query: 65 SLGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLP 119
++G+D+G G+A+S G+ + + ++ + E+ E ++ E+ ++ E ++F++GLP
Sbjct: 3 TMGLDVGSKTVGVAISDPLGWTAQGIEIVSIDEEEGEFGFARINELIEQYEVEQFVVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL--DEHRTSAEAVDRMI--NMGLSKS 175
K+ + S P++ S +L E +++ ++ DE T+ +A +RM+ S+
Sbjct: 63 KNMNNSIGPRAQASMSYGKKL-----EEYYQLPVIYQDERLTTVQA-ERMLVEQADTSRK 116
Query: 176 ARQTKTDAYAAVILLERYF 194
R+ D AAV++L+ Y
Sbjct: 117 KRKKVIDKLAAVVILQNYL 135
>gi|340777176|ref|ZP_08697119.1| putative Holliday junction resolvase [Acetobacter aceti NBRC 14818]
Length = 182
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 48/141 (34%), Positives = 65/141 (46%), Gaps = 16/141 (11%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D G GLALS P VLK EKL + +++EIA ++ ++GLP
Sbjct: 37 LGIDPGAKTAGLALSDVMLMVASPYGVLKR--EKLSVMARKIVEIASEQDVGALVVGLPL 94
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
S DG P + R A L + + G L DE R S+ V+R I LS+ R
Sbjct: 95 SMDGGFGPAAQAARDWAQAL---SDQIGIAAVLWDE-RFSSSVVNRTIIGEADLSRKRRG 150
Query: 179 TKTDAYAAVILLE---RYFSM 196
D AA +L+ Y SM
Sbjct: 151 EIVDKMAAAYMLQGVLDYLSM 171
>gi|78187889|ref|YP_375932.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273]
gi|146325586|sp|Q3B192.1|RUVX_PELLD RecName: Full=Putative Holliday junction resolvase
gi|78167791|gb|ABB24889.1| Holliday junction resolvase YqgF [Chlorobium luteolum DSM 273]
Length = 141
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 42/136 (30%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G +G+D G R GLA++ + V L +L I Q + D ++G P
Sbjct: 5 GRIVGIDYGTKRIGLAMTDPLQLFASPVGTFEPGGLHHELRRIMQGDTVDLAVVGSPVCD 64
Query: 123 DGSETPQSNKVRSVAGRLA--VRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
DGS N + +V R +RAA RV +DE +S EA + G S+ R+ K
Sbjct: 65 DGS----GNAMTAVVDRFVEELRAAFPDLRVERVDESHSSREASRILAASGKSRKVRREK 120
Query: 181 T--DAYAAVILLERYF 194
D+ AA +LL R+
Sbjct: 121 GRLDSAAACVLLTRFL 136
>gi|344201669|ref|YP_004786812.1| Holliday junction resolvase [Muricauda ruestringensis DSM 13258]
gi|343953591|gb|AEM69390.1| Holliday junction resolvase [Muricauda ruestringensis DSM 13258]
Length = 136
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 63/132 (47%), Gaps = 4/132 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + + + L L + Q+E + F++GLPK D +
Sbjct: 5 LALDFGKVRTGIAVTDELQLIASGLTTIETKDLLTFLAKYTQKESVERFVVGLPKQMDNT 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+ ++ +L +A V DE TS AV M++ G+ K R+ K D
Sbjct: 65 ASESEVLIQGFLNKL--KAKFPSIPVERQDERFTSKMAVRSMLDSGMKKKKRRDKALVDE 122
Query: 184 YAAVILLERYFS 195
+A ++L+ Y +
Sbjct: 123 ISATLILQAYLN 134
>gi|444920110|ref|ZP_21239954.1| Putative Holliday junction resolvase [Wohlfahrtiimonas
chitiniclastica SH04]
gi|444508977|gb|ELV09145.1| Putative Holliday junction resolvase [Wohlfahrtiimonas
chitiniclastica SH04]
Length = 137
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/133 (27%), Positives = 68/133 (51%), Gaps = 9/133 (6%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQREETDE-FIIGLPKSW 122
+G D G+ GLA+ +P+ +LK + + + + ++ T ++G+P +
Sbjct: 6 VGFDYGVKNIGLAVGNRLTNTAQPIAILKATDGQPDWEEVARHLKDWTPTVLVVGIPYTA 65
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+ET K+R RL R G V +DE R S++ ++ I SK ++ + D
Sbjct: 66 DGTETEHIKKIRKFMNRLHGRF---GLPVEEVDE-RLSSQESEQYIKP--SKKGKKGQLD 119
Query: 183 AYAAVILLERYFS 195
A++A I++ERY +
Sbjct: 120 AHSAAIIVERYLN 132
>gi|406669262|ref|ZP_11076542.1| RNAse H-fold protein YqgF [Facklamia ignava CCUG 37419]
gi|405584059|gb|EKB57985.1| RNAse H-fold protein YqgF [Facklamia ignava CCUG 37419]
Length = 138
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 71/135 (52%), Gaps = 8/135 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + L +++ E+ + +LL++ + + +IGLPK
Sbjct: 1 MGLDVGSKTVGVAVSDLMGWTAQGLETIRIDEEQEDFGFDRLLQLIEENQVKTVVIGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMG-LSKSARQT 179
+ + + P++ +S +L E ++ DE T+++A +I G +S+ R+
Sbjct: 61 NMNNTLGPRAIASQSYGEKLLQLLPE--LTIHYQDERLTTSQAERMLIQEGNVSRKKRKQ 118
Query: 180 KTDAYAAVILLERYF 194
D AAVI+L+ Y
Sbjct: 119 VIDKIAAVIILQNYL 133
>gi|417844450|ref|ZP_12490493.1| Putative Holliday junction resolvase [Haemophilus haemolyticus
M21639]
gi|341956733|gb|EGT83150.1| Putative Holliday junction resolvase [Haemophilus haemolyticus
M21639]
Length = 141
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 36/136 (26%), Positives = 64/136 (47%), Gaps = 6/136 (4%)
Query: 65 SLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKS 121
+L D G G A+ + + L K + +E +E + D ++GLP +
Sbjct: 5 ALAFDFGTKSIGCAVGQSITSTAQALPAFKAQDGIPNWDAIEKCLKEWKPDVVVVGLPLN 64
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DG+E + + R A RL R G V L DE T+ EA + + G ++ +++K
Sbjct: 65 MDGTEQDLTLRARKFANRLQGRF---GVNVQLQDERLTTTEARSEIFDRGGFRALKKSKV 121
Query: 182 DAYAAVILLERYFSMS 197
D +A ++LE +F ++
Sbjct: 122 DGISACLILESWFEVA 137
>gi|407973270|ref|ZP_11154182.1| Holliday junction resolvase YqgF [Nitratireductor indicus C115]
gi|407431111|gb|EKF43783.1| Holliday junction resolvase YqgF [Nitratireductor indicus C115]
Length = 158
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 43/139 (30%), Positives = 66/139 (47%), Gaps = 12/139 (8%)
Query: 59 LWRGGFSLGVDLGLSRTGLALS-KGF---CVRPLTVLKLRGEKLELQLLEIAQREETDEF 114
L +G G+DLG GLA+S +G RP+ + K + E LL R+
Sbjct: 13 LEQGKTLAGLDLGTKTIGLAVSDRGLRLATPRPVVMRKKFTQDAE-ALLAAFARDTVGGI 71
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAER--GWRVYLLDEHRTSAEAVDRMINMGL 172
+IGLP + DGSE P++ R+ +R ER V DE ++ A +I M +
Sbjct: 72 VIGLPVNMDGSEGPRAQSTRAF-----IRNFERLSDLPVAFWDERMSTVAAERVLIEMDV 126
Query: 173 SKSARQTKTDAYAAVILLE 191
S+ R + D+ AA +L+
Sbjct: 127 SRKKRAERIDSAAAAFILQ 145
>gi|419706193|ref|ZP_14233724.1| putative Holliday junction resolvase [Mycoplasma canis UFG4]
gi|384394998|gb|EIE41431.1| putative Holliday junction resolvase [Mycoplasma canis UFG4]
Length = 143
Score = 47.4 bits (111), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL-----QLLEIAQREETDEFIIGLPK 120
LG+D+G + G A++ + +++ L+ + + Q+ + + D F+IG P
Sbjct: 4 LGLDIGSASCGFAITDESEIISSSLVNLKFIEFDFDQIYNQIQKYLDEYKIDGFVIGYPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
DG+++ + V VA + R + ++E ++ +A + MI+ G+S+ R+ +
Sbjct: 64 KIDGTKSSTTLMVEDVANEIKKRF---DLPILFINEQYSTKKAHEVMISAGVSRQKRKLQ 120
Query: 181 TDAYAAVILLERY 193
D AA ++L+ Y
Sbjct: 121 KDKLAAQLILQDY 133
>gi|50083614|ref|YP_045124.1| Holliday junction resolvase-like protein [Acinetobacter sp. ADP1]
gi|62900972|sp|Q6FF55.1|RUVX_ACIAD RecName: Full=Putative Holliday junction resolvase
gi|49529590|emb|CAG67302.1| putative Holliday junction resolvase [Acinetobacter sp. ADP1]
Length = 147
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G QLL+I + + F++GLP +
Sbjct: 11 MAFDFGTQKMGIAIGQAAIESSTPLALFPMKDGIPDWNQLLKIVKEWQPTLFLVGLPLNM 70
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + W ++DE T+ EA D + + A++ D
Sbjct: 71 DDSESELSARARKFARRLRHQTNITTW---MVDERLTTREARDELESYQEQGRAKKIAAD 127
Query: 183 AYAAVILLERYF 194
+ AA +L++ ++
Sbjct: 128 SIAASLLIQSWY 139
>gi|402852003|ref|ZP_10900114.1| Putative Holliday junction resolvase [Rhodovulum sp. PH10]
gi|402497722|gb|EJW09523.1| Putative Holliday junction resolvase [Rhodovulum sp. PH10]
Length = 170
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 70/133 (52%), Gaps = 8/133 (6%)
Query: 63 GFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLP 119
G +G+DLG G+A+S + TV++ R + ++L++A F++GLP
Sbjct: 19 GALIGLDLGDKTIGVAVSDPDRRLATGVETVMRKRFTEDAARVLKLAAERNVVGFVLGLP 78
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGLSKSARQ 178
+ +G+E P++ R+ A LA A + L DE R S AV+R +I S++ R+
Sbjct: 79 LNMNGTEGPRAQSTRAFARNLAKLTA---LPIGLWDE-RLSTAAVERELIAADASRAKRK 134
Query: 179 TKTDAYAAVILLE 191
D +AA+ +L+
Sbjct: 135 AVIDQHAAIFILQ 147
>gi|358011646|ref|ZP_09143456.1| Holliday junction resolvase-like protein [Acinetobacter sp. P8-3-8]
Length = 147
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 61/132 (46%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ V PL + ++ G LL+I ++ + F++GLP +
Sbjct: 11 MAFDFGTQKMGMAVGSSLIQSVNPLPLFPMKDGIPNWDNLLKIVKQHQPSLFLVGLPLNM 70
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + ++DE T+ EA D + + + D
Sbjct: 71 DDSESELSTRARKFARRL---RHQTNIETLMVDERLTTREARDELEHYQAQGRGKNLAAD 127
Query: 183 AYAAVILLERYF 194
+ AA + +E ++
Sbjct: 128 SIAAALFIESWY 139
>gi|384938233|ref|ZP_10029925.1| putative Holliday junction resolvase [Mycoplasma canis UF31]
gi|384393194|gb|EIE39645.1| putative Holliday junction resolvase [Mycoplasma canis UF31]
Length = 143
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 31/133 (23%), Positives = 67/133 (50%), Gaps = 8/133 (6%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLEL-----QLLEIAQREETDEFIIGLPK 120
LG+D+G + G A++ + +++ L+ + + Q+ + + D F+IG P
Sbjct: 4 LGLDIGSASCGFAITDESEIISSSLVNLKFIEFDFNQIYNQIQKYLDEYKIDGFVIGYPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
DG+++ + V VA + R + ++E ++ +A + MI+ G+S+ R+ +
Sbjct: 64 KIDGTKSSTTLMVEDVANEIKKRF---DLPILFINEQYSTKKAHEVMISAGVSRQKRKLQ 120
Query: 181 TDAYAAVILLERY 193
D AA ++L+ Y
Sbjct: 121 KDKLAAQLILQDY 133
>gi|258645601|ref|ZP_05733070.1| putative Holliday junction resolvase [Dialister invisus DSM 15470]
gi|260402959|gb|EEW96506.1| putative Holliday junction resolvase [Dialister invisus DSM 15470]
Length = 142
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/132 (28%), Positives = 65/132 (49%), Gaps = 5/132 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRG---EKLELQLLEIAQREETDEFIIGLPKSW 122
+ +D+G G+A+S F V +R EK ++L +A +EF+IG+P +
Sbjct: 4 MSLDVGSQTIGVAVSDLFGWTAQGVETIRHTTREKDFVRLRHLADEYNVEEFVIGMPLNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+G++ ++ + A LA AA + DE T+ A ++I +S+ R+ D
Sbjct: 64 NGTKGMRAEQTEKFAEALA--AAFPDIPYHFWDERLTTVMAQRQLIEADVSRKKRKKVID 121
Query: 183 AYAAVILLERYF 194
AAV++LE Y
Sbjct: 122 KMAAVVILEGYL 133
>gi|148825415|ref|YP_001290168.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittEE]
gi|229846394|ref|ZP_04466502.1| Holliday junction resolvase-like protein [Haemophilus influenzae
7P49H1]
gi|260582596|ref|ZP_05850386.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127]
gi|167012729|sp|A5UAI4.1|RUVX_HAEIE RecName: Full=Putative Holliday junction resolvase
gi|148715575|gb|ABQ97785.1| Holliday junction resolvase-like protein [Haemophilus influenzae
PittEE]
gi|229810487|gb|EEP46205.1| Holliday junction resolvase-like protein [Haemophilus influenzae
7P49H1]
gi|260094407|gb|EEW78305.1| Holliday junction resolvase YqgF [Haemophilus influenzae NT127]
Length = 139
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 63/134 (47%), Gaps = 11/134 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+G +G S TG A + L K + + +E +E + D I+GLP + D
Sbjct: 14 SIGCAIGQSITGTA-------QALPAFKAQDGIPNWEAIEKCLKEWKPDVVIVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E + R A RL R G V+L DE T+ +A + G K+ ++ K D
Sbjct: 67 GTEQNLTLLARKFANRLQGRF---GVNVHLQDERLTTTQARSEIFERGGFKALKKGKVDG 123
Query: 184 YAAVILLERYFSMS 197
+A ++LE +F +
Sbjct: 124 ISACLILESWFECT 137
>gi|385260786|ref|ZP_10038927.1| RNAse H domain protein, YqgF family [Streptococcus sp. SK140]
gi|385190731|gb|EIF38170.1| RNAse H domain protein, YqgF family [Streptococcus sp. SK140]
Length = 139
Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 70/136 (51%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++++ ++ + +L E+ + + D FI+GLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQGQFGFERLKELVETYKVDRFIVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ +L G V DE T+ A +RM+ +S++ R+
Sbjct: 64 NMNNTSGPRVEASQAYGAKL---EELFGLPVEYQDERLTTV-AAERMLIEQADISRNKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|443632058|ref|ZP_21116238.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
gi|443348173|gb|ELS62230.1| Holliday junction resolvase-like protein [Bacillus subtilis subsp.
inaquosorum KCTC 13429]
Length = 138
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKL---RGEKLELQLLEIAQREETDEFIIGLPK 120
LG+DLG G+ALS G+ + + +K+ G+ +L E+ + D+ ++G PK
Sbjct: 4 LGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLSRLSELIKDHTIDKIVLGFPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ +G+ P+ ++ A V V L DE T+ A +I +S+ R+
Sbjct: 64 NMNGTVGPRGEASQTFA---KVLETTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 121 IDKMAAVMILQGYL 134
>gi|395789808|ref|ZP_10469316.1| RNAse H-fold protein YqgF [Bartonella taylorii 8TBB]
gi|395428030|gb|EJF94112.1| RNAse H-fold protein YqgF [Bartonella taylorii 8TBB]
Length = 159
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 62/128 (48%), Gaps = 6/128 (4%)
Query: 67 GVDLGLSRTGLALSK-GFCV-RPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSWD 123
G+DLG G+A+S G P VL+ + L+ L++I RE IIGLP + +
Sbjct: 21 GLDLGTKTVGIAVSDMGLTFSNPRPVLQRKKFTLDAHALIQIFNRENVGAVIIGLPLNMN 80
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
GS P++ ++ + A DE ++ A ++ M +S++ R T+ D+
Sbjct: 81 GSSGPRAQATKTFVSNM---EAHTEIPFVFWDERLSTIAAERFLLEMDVSRAKRATRIDS 137
Query: 184 YAAVILLE 191
AA +L+
Sbjct: 138 AAAAFILQ 145
>gi|332799383|ref|YP_004460882.1| Holliday junction resolvase [Tepidanaerobacter acetatoxydans Re1]
gi|438002531|ref|YP_007272274.1| putative holliday junction resolvase [Tepidanaerobacter
acetatoxydans Re1]
gi|332697118|gb|AEE91575.1| Holliday junction resolvase [Tepidanaerobacter acetatoxydans Re1]
gi|432179325|emb|CCP26298.1| putative holliday junction resolvase [Tepidanaerobacter
acetatoxydans Re1]
Length = 143
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/136 (27%), Positives = 68/136 (50%), Gaps = 12/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLR--GEKLEL-QLLEIAQREETDEFIIGLPK 120
LG+D+G R G+A+S G + + V++ + G+ ++ ++ I + I+GLPK
Sbjct: 4 LGLDVGEKRVGVAISDELGLTAQGIDVIERKNDGKNKDIDRICRIISDYNVTKVIVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRL--AVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQ 178
+ +G+ P S V + +L A+ W DE T+A A +I +S+ R+
Sbjct: 64 NMNGTLGPSSEAVENYTKKLQKAISIDLEFW-----DERLTTAAAERILIEADVSRQKRK 118
Query: 179 TKTDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 119 GVIDKLAAVLILQSYL 134
>gi|399546716|ref|YP_006560024.1| Holliday junction resolvase-like protein [Marinobacter sp.
BSs20148]
gi|399162048|gb|AFP32611.1| Holliday junction resolvase-like protein [Marinobacter sp.
BSs20148]
Length = 140
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/133 (30%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVR--PLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
+ D G R G+A+ + R PLT++ R + LE RE D ++GLP +
Sbjct: 10 MAFDFGTRRIGIAVGQEMLGRGEPLTMIAARDGTPDWTQLEKLLREWRPDLVVVGLPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE + R RL R V ++DE TS +A ++ G S++ + D
Sbjct: 70 DDSENEMCLRARKFGKRLHGRFHVT---VEMVDERLTSYQAKGEVMAAGGSRNYGRDGID 126
Query: 183 AYAAVILLERYFS 195
AAV++LE +F+
Sbjct: 127 DRAAVLILETWFN 139
>gi|383807391|ref|ZP_09962951.1| hypothetical protein IMCC13023_09130 [Candidatus Aquiluna sp.
IMCC13023]
gi|383298745|gb|EIC91360.1| hypothetical protein IMCC13023_09130 [Candidatus Aquiluna sp.
IMCC13023]
Length = 145
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/128 (32%), Positives = 64/128 (50%), Gaps = 9/128 (7%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L VD+GL+R G+A+S P +V+ + + +L+ I + + + +GLP S G
Sbjct: 4 LAVDVGLARIGVAISVDSLAIPHSVIS-QSDTAIAELVAIYREKNAECIYVGLPLSLRGG 62
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT--DA 183
T + +A A A +G V L+DE TS A + G K+A+Q K DA
Sbjct: 63 HTASTK----MAIEFAELIAAQGLPVRLIDERLTSKTAQQSLRQAG--KNAKQQKAIIDA 116
Query: 184 YAAVILLE 191
AA ++LE
Sbjct: 117 SAACLILE 124
>gi|302550142|ref|ZP_07302484.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes
DSM 40736]
gi|302467760|gb|EFL30853.1| Holliday junction resolvase YqgF [Streptomyces viridochromogenes
DSM 40736]
Length = 154
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/156 (26%), Positives = 70/156 (44%), Gaps = 12/156 (7%)
Query: 60 WRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVLKLRG-EKLELQLLEIAQREETDEFII 116
R G L +D+G +R G+A G P+ + R + +L + + E E ++
Sbjct: 1 MRRGRRLAIDVGDARIGVASCDPDGILATPVETVPGRDIPAAQRRLKGLVEEYEPIEVVV 60
Query: 117 GLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA 176
GLP+S G E P + KVR LA + V L+DE T+ A + G+
Sbjct: 61 GLPRSLKGGEGPAAVKVRGFVQELARMISP--VPVRLVDERMTTVTASQGLRASGVKSKK 118
Query: 177 RQTKTDAYAAVILLERYFS-------MSGQGTEIVL 205
++ D AAV++L++ G+G E+V+
Sbjct: 119 GRSVIDQAAAVVILQQALESERVSGKAPGEGVEVVI 154
>gi|163756827|ref|ZP_02163936.1| Holliday junction resolvase-like protein [Kordia algicida OT-1]
gi|161323216|gb|EDP94556.1| Holliday junction resolvase-like protein [Kordia algicida OT-1]
Length = 135
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/131 (30%), Positives = 62/131 (47%), Gaps = 4/131 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + +R L L E +E + F+IG PK + +
Sbjct: 5 LAIDYGKKRTGIAVTDEMQLIASGLTTVRTHDLIKFLKEYVAKENVELFLIGEPKQMN-N 63
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT--DA 183
E +S + RL +A + +DE TS A MI+ GL K RQ K+ D
Sbjct: 64 EASESEALIKEFIRLLTKALP-AIPIKRVDERFTSKMAFQTMIDSGLKKKQRQNKSLIDE 122
Query: 184 YAAVILLERYF 194
+A I+L+ Y
Sbjct: 123 ISATIILQSYL 133
>gi|396080106|dbj|BAM33482.1| Holliday junction resolvase-like protein [Helicobacter cinaedi ATCC
BAA-847]
Length = 140
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/133 (24%), Positives = 63/133 (47%), Gaps = 9/133 (6%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLT-VLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDG 124
L D+GL R G A+++ + P+ +++ + +L EI + E + ++GLP +
Sbjct: 7 LACDVGLKRIGFAVTQLGIILPIEPIIRKNRNQASKELSEILKTREIEILVVGLPSGGEA 66
Query: 125 SETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLS---KSARQTKT 181
+ ++ G +A G + +DE TS EA+ MG+ K + +
Sbjct: 67 GHSDTRKRILHFVGLVAF-----GGEIAYIDEDYTSLEALQSSAYMGVQNRLKIQKDGRL 121
Query: 182 DAYAAVILLERYF 194
D+ +A ++LER+
Sbjct: 122 DSLSATLILERFL 134
>gi|431112309|ref|ZP_19497685.1| RNAse H-fold protein YqgF [Enterococcus faecium E1613]
gi|430569263|gb|ELB08280.1| RNAse H-fold protein YqgF [Enterococcus faecium E1613]
Length = 143
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + + ++++ + E +L E+ + E D F++GLPK
Sbjct: 4 MGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVTQYEVDRFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + S P++ S ++ + V DE T+ +A +RM+ S++ R+
Sbjct: 64 NMNNSIGPRAEASMSYGEKIKELFS---LPVDYQDERLTTVQA-ERMLVEQANTSRAKRK 119
Query: 179 TKTDAYAAVILLERYFSMSGQ 199
D AAV++L+ Y SG+
Sbjct: 120 KVIDKLAAVMILQNYLDGSGK 140
>gi|189439478|ref|YP_001954559.1| endonuclease for recombination [Bifidobacterium longum DJO10A]
gi|227545931|ref|ZP_03975980.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Bifidobacterium longum subsp. longum ATCC 55813]
gi|312132885|ref|YP_004000224.1| endonuclease for recombination [Bifidobacterium longum subsp.
longum BBMN68]
gi|317482214|ref|ZP_07941236.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp.
12_1_47BFAA]
gi|32130036|sp|Q8G5X0.2|RUVX_BIFLO RecName: Full=Putative Holliday junction resolvase
gi|226725490|sp|B3DSE2.1|RUVX_BIFLD RecName: Full=Putative Holliday junction resolvase
gi|189427913|gb|ACD98061.1| Putative endonuclease for recombination [Bifidobacterium longum
DJO10A]
gi|227213565|gb|EEI81414.1| YqgF family crossover junction endodeoxyribonuclease, YrrK
[Bifidobacterium longum subsp. infantis ATCC 55813]
gi|311773856|gb|ADQ03344.1| Putative endonuclease for recomBination [Bifidobacterium longum
subsp. longum BBMN68]
gi|316916352|gb|EFV37752.1| hypothetical protein HMPREF0177_00629 [Bifidobacterium sp.
12_1_47BFAA]
Length = 152
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLEL--QLLEIAQREETDEFIIGLPKS 121
LGVDLG +R GLALS P + + G+ ++L + + E D I+GLP
Sbjct: 4 LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQ 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGW----------RVYLLDEHRTSAEAVDRMINMG 171
DG+E + K R A L R +V L+DE T+ A ++
Sbjct: 64 MDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAH 123
Query: 172 LSKSARQTKTDAYAAVILLE 191
+ + + D +AV++L+
Sbjct: 124 KASNKHRPVVDQQSAVVILQ 143
>gi|332878466|ref|ZP_08446187.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|357044511|ref|ZP_09106161.1| RNAse H domain protein, YqgF family [Paraprevotella clara YIT
11840]
gi|332683561|gb|EGJ56437.1| RNAse H domain protein, YqgF family [Capnocytophaga sp. oral taxon
329 str. F0087]
gi|355532564|gb|EHH01947.1| RNAse H domain protein, YqgF family [Paraprevotella clara YIT
11840]
Length = 144
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/131 (27%), Positives = 60/131 (45%), Gaps = 4/131 (3%)
Query: 63 GFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
G L +D G RTG+A++ + + + + ++ ++E + ++GLPK
Sbjct: 2 GRVLAIDYGKKRTGVAVTDPLQLIANGLTTVSTSSVMDFIVSYVRQEHVERIVVGLPKQA 61
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK-- 180
+G ++ ++ S L R E V DE TS A M+ GL K ARQ K
Sbjct: 62 NGEDSENMGRINSFVRCLHERLPE--IPVEFFDERYTSVLAHQAMLQGGLRKKARQNKAL 119
Query: 181 TDAYAAVILLE 191
D +A I+L+
Sbjct: 120 VDEISATIILQ 130
>gi|113460159|ref|YP_718215.1| Holliday junction resolvase-like protein [Haemophilus somnus 129PT]
gi|170718190|ref|YP_001785215.1| Holliday junction resolvase-like protein [Haemophilus somnus 2336]
gi|123327115|sp|Q0I1B3.1|RUVX_HAES1 RecName: Full=Putative Holliday junction resolvase
gi|189046099|sp|B0UWW2.1|RUVX_HAES2 RecName: Full=Putative Holliday junction resolvase
gi|112822202|gb|ABI24291.1| possible endonuclease involved in recombination [Haemophilus somnus
129PT]
gi|168826319|gb|ACA31690.1| Holliday junction resolvase YqgF [Haemophilus somnus 2336]
Length = 141
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/140 (28%), Positives = 68/140 (48%), Gaps = 11/140 (7%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPK 120
G S+G +G S TG A + L K + G L++ + + + + ++GLP
Sbjct: 11 GTKSIGCAVGQSITGTA-------QALPAFKAQDGIPDWLKIEKCLKDWQPNIVVVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DGSE ++ R A RL R G +V L DE T+ +A D + G ++ ++ K
Sbjct: 64 NMDGSEQDLTHLARKFANRLNGRF---GVKVELQDERLTTKQARDEIFQRGGYRALKKEK 120
Query: 181 TDAYAAVILLERYFSMSGQG 200
D+ +A ++LE +F G
Sbjct: 121 VDSISACLILESWFENGACG 140
>gi|269126370|ref|YP_003299740.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM
43183]
gi|268311328|gb|ACY97702.1| Holliday junction resolvase YqgF [Thermomonospora curvata DSM
43183]
Length = 152
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 60/123 (48%), Gaps = 9/123 (7%)
Query: 66 LGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWD 123
LG+D+G R G+A S G PL ++ RG+ ++ E+ E E I+GLP S
Sbjct: 3 LGIDVGSVRIGVARSDPAGILATPLETVR-RGKGDLDRIAELVAEHEAVEVIVGLPTSLS 61
Query: 124 GSETPQSNKVR----SVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
G P + + R ++AGRL+ + G R+Y DE T+ A + G+ AR+
Sbjct: 62 GRSGPAAAQARRFAEALAGRLSQLLPDGGVRLY--DERLTTVTAEAELRRSGVRGKARRQ 119
Query: 180 KTD 182
D
Sbjct: 120 VVD 122
>gi|338533073|ref|YP_004666407.1| hypothetical protein LILAB_17130 [Myxococcus fulvus HW-1]
gi|337259169|gb|AEI65329.1| hypothetical protein LILAB_17130 [Myxococcus fulvus HW-1]
Length = 156
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 38/133 (28%), Positives = 63/133 (47%), Gaps = 6/133 (4%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQR---EETDEFIIGLPKS 121
++G+DLG G+A+S G + V +R L+ L +A E ++GLP +
Sbjct: 3 TMGLDLGTKTIGVAVSDGLGLTAQGVTTVRRTSLKADLAALAAVVAGHEVTHVVLGLPLN 62
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT 181
DGSE P++ R A L A G V L DE ++ A ++ +S++ R+
Sbjct: 63 MDGSEGPRAEASRKFADTL---AQSLGVTVELWDERLSTVAATRTLLEADVSRARRREVI 119
Query: 182 DAYAAVILLERYF 194
D AA +L+ +
Sbjct: 120 DQVAAQFILQGWL 132
>gi|308050639|ref|YP_003914205.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799]
gi|307632829|gb|ADN77131.1| Holliday junction resolvase YqgF [Ferrimonas balearica DSM 9799]
Length = 138
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/134 (29%), Positives = 65/134 (48%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPK 120
G S+GV +G + TG A PL +K R G ++ + + + D+ ++GLP
Sbjct: 10 GTKSIGVAVGQTVTGTA-------SPLLGIKARDGIPNWDEIAALLKEWQPDKLVVGLPL 62
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG++ + R A RL R G DE T+ +A R+ G ++ ++ +
Sbjct: 63 NMDGTDQHVTRAARKFANRLFGRF---GIETLTQDERLTTVDARARLFEDGGYRALKKDQ 119
Query: 181 TDAYAAVILLERYF 194
DA AA ++LE YF
Sbjct: 120 VDALAAALILESYF 133
>gi|213692472|ref|YP_002323058.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
gi|254767498|sp|B7GSA0.1|RUVX_BIFLI RecName: Full=Putative Holliday junction resolvase
gi|213523933|gb|ACJ52680.1| Holliday junction resolvase YqgF [Bifidobacterium longum subsp.
infantis ATCC 15697 = JCM 1222]
Length = 151
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 14/140 (10%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLEL--QLLEIAQREETDEFIIGLPKS 121
LGVDLG +R GLALS P + + G+ ++L + + E D I+GLP
Sbjct: 4 LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVIEDEHVDHVIVGLPLQ 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGW----------RVYLLDEHRTSAEAVDRMINMG 171
DG+E + K R A L R +V L+DE T+ A ++
Sbjct: 64 MDGTEGKSAKKARRWAANLEKRLQAESEDSDSTEYQIPQVSLIDERLTTVSAHRQLFEAH 123
Query: 172 LSKSARQTKTDAYAAVILLE 191
+ + + D +AV++L+
Sbjct: 124 KASNKHRPVVDQQSAVVILQ 143
>gi|157151461|ref|YP_001451289.1| Holliday junction resolvase-like protein [Streptococcus gordonii
str. Challis substr. CH1]
gi|189046109|sp|A8AZS9.1|RUVX_STRGC RecName: Full=Putative Holliday junction resolvase
gi|157076255|gb|ABV10938.1| conserved hypothetical protein TIGR00250 [Streptococcus gordonii
str. Challis substr. CH1]
Length = 139
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 70/136 (51%), Gaps = 11/136 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S GF + L ++++ ++ E +L E+ + D+F+IGLPK
Sbjct: 4 MGLDVGSKTVGVAISDPLGFTAQGLEIIQINEDQEEFGFERLGELVAEYKVDKFVIGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + + P+ ++ ++ G V DE T+ A +RM+ +S++ R+
Sbjct: 64 NMNNTSGPRVEASQAYGAKV---TELFGLPVEYQDERLTTV-AAERMLIEQADVSRNKRK 119
Query: 179 TKTDAYAAVILLERYF 194
D AA ++L+ Y
Sbjct: 120 KVIDKLAAQLILQNYL 135
>gi|405376865|ref|ZP_11030816.1| RNAse H-fold protein YqgF [Rhizobium sp. CF142]
gi|397326596|gb|EJJ30910.1| RNAse H-fold protein YqgF [Rhizobium sp. CF142]
Length = 163
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query: 67 GVDLGLSRTGLALS---KGFCV-RPLTVLKLRGEKLELQ---LLEIAQREETDEFIIGLP 119
G+DLG GLA+S + F RP+ L+ EK + LL A +E+ F+IGLP
Sbjct: 21 GLDLGTKTIGLAMSDLGRRFATPRPV----LKREKFTIDAETLLNFATKEKVAAFVIGLP 76
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLL--DEHRTSAEAVDRMINMGLSKSAR 177
+ +GS P+ R+ VR E+ + + DE ++ A ++ M +S++ R
Sbjct: 77 MNMNGSAGPRVQATRAF-----VRNMEQKTAIPFVYWDERLSTVAAERALLEMDVSRAKR 131
Query: 178 QTKTDAYAAVILLE 191
+ D+ AA +L+
Sbjct: 132 AERIDSAAASFILQ 145
>gi|319790615|ref|YP_004152248.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1]
gi|317115117|gb|ADU97607.1| Holliday junction resolvase YqgF [Thermovibrio ammonificans HB-1]
Length = 134
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/137 (27%), Positives = 67/137 (48%), Gaps = 11/137 (8%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVL--KLRGEKLELQLLEIAQREETDEFIIGLPKS 121
+ +D+G R G+ALS P +L K E E +LL+I + +E ++G+P +
Sbjct: 1 MALDVGFKRIGVALSDPLKLTASPYRILYRKSNRETFE-ELLKIVLDKGVEEIVVGIPIN 59
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWR--VYLLDEHRTSAEAVDRMINMGLSKSARQT 179
G +T K+ +L ERG++ +Y DE ++ EA + ++G K
Sbjct: 60 AQGEKTKIGQKIEKFTAKLQSFLRERGYQIPIYTHDESFSTQEAREVARSLGKEKE---- 115
Query: 180 KTDAYAAVILLERYFSM 196
+ D YAA ++L+ + +
Sbjct: 116 ELDDYAAALILKEWLEL 132
>gi|307249444|ref|ZP_07531433.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
gi|306858518|gb|EFM90585.1| Holliday junction resolvase [Actinobacillus pleuropneumoniae
serovar 4 str. M62]
Length = 137
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPK 120
G +S+G +G TG A + L K + G Q+ ++ + + + ++GLP
Sbjct: 11 GTYSIGCSVGQDITGTA-------QGLPSFKAQDGIPNWDQIEKVIKEWQPERLVVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DGSE P + + + A RL R V L DE T+ A + G K+ ++ K
Sbjct: 64 NMDGSEQPLTQRAKKFANRLNGRF---NLPVELQDERLTTVSAKAEIFERGGYKALKKDK 120
Query: 181 TDAYAAVILLERYF 194
D+ +A ++LE +F
Sbjct: 121 VDSISACLILESWF 134
>gi|227484975|ref|ZP_03915291.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
ATCC 51172]
gi|227237130|gb|EEI87145.1| crossover junction endodeoxyribonuclease [Anaerococcus lactolyticus
ATCC 51172]
Length = 139
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 62/132 (46%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
+G+D+G G+ALS + +P +K K ++ +E I + ++GLPK+
Sbjct: 5 MGLDVGDKTIGVALSDPLFITAQPYETIKRTKAKFDIDRIEKIFVENDISLIVVGLPKNM 64
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
+ + PQS ++ S + R + DE T+ ++ +I+M + + R+ D
Sbjct: 65 NNTMGPQSMRIISFVDLIKKRI---DTEIVYQDERLTTIQSESVLIDMSVRRENRKAHID 121
Query: 183 AYAAVILLERYF 194
AA +L+ Y
Sbjct: 122 KIAASFILQTYL 133
>gi|311069221|ref|YP_003974144.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942]
gi|419820128|ref|ZP_14343742.1| Holliday junction resolvase-like protein [Bacillus atrophaeus C89]
gi|310869738|gb|ADP33213.1| Holliday junction resolvase-like protein [Bacillus atrophaeus 1942]
gi|388475778|gb|EIM12487.1| Holliday junction resolvase-like protein [Bacillus atrophaeus C89]
Length = 138
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 65/134 (48%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKL---RGEKLELQLLEIAQREETDEFIIGLPK 120
LG+DLG G+ALS G+ + + +K+ G+ +L E+ + D+ ++G PK
Sbjct: 4 LGLDLGTKTLGVALSDEMGWTAQGIETIKINEAEGDYGLPRLSELTKDHTIDKIVLGFPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ +G+ P+ ++ A L V L DE T+ A +I +S+ R+
Sbjct: 64 NMNGTVGPRGEASQTFAKLLE---TTYNVPVVLWDERLTTMAAEKMLIAADVSRQKRKKV 120
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ Y
Sbjct: 121 IDKMAAVMILQGYL 134
>gi|227552124|ref|ZP_03982173.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
TX1330]
gi|257882634|ref|ZP_05662287.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257886706|ref|ZP_05666359.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257894866|ref|ZP_05674519.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|257895281|ref|ZP_05674934.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257897895|ref|ZP_05677548.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|293553141|ref|ZP_06673779.1| conserved hypothetical protein [Enterococcus faecium E1039]
gi|293568771|ref|ZP_06680085.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|293571039|ref|ZP_06682081.1| conserved hypothetical protein [Enterococcus faecium E980]
gi|406580085|ref|ZP_11055306.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD4E]
gi|406584578|ref|ZP_11059605.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD2E]
gi|406590979|ref|ZP_11065310.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD1E]
gi|410936690|ref|ZP_11368553.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD5E]
gi|424795997|ref|ZP_18221786.1| RNAse H domain protein, YqgF family [Enterococcus faecium S447]
gi|424857232|ref|ZP_18281407.1| RNAse H domain protein, YqgF family [Enterococcus faecium R499]
gi|424945397|ref|ZP_18361094.1| RNAse H domain protein, YqgF family [Enterococcus faecium R496]
gi|424957592|ref|ZP_18372308.1| RNAse H domain protein, YqgF family [Enterococcus faecium R446]
gi|424959818|ref|ZP_18374378.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1986]
gi|424968238|ref|ZP_18381878.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1140]
gi|424993525|ref|ZP_18405513.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV168]
gi|424997809|ref|ZP_18409541.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV165]
gi|425002525|ref|ZP_18413949.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV161]
gi|425005243|ref|ZP_18416506.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV102]
gi|425009814|ref|ZP_18420806.1| RNAse H domain protein, YqgF family [Enterococcus faecium E422]
gi|425018673|ref|ZP_18429093.1| RNAse H domain protein, YqgF family [Enterococcus faecium C621]
gi|425033726|ref|ZP_18438674.1| RNAse H domain protein, YqgF family [Enterococcus faecium 515]
gi|425055307|ref|ZP_18458787.1| RNAse H domain protein, YqgF family [Enterococcus faecium 505]
gi|425057127|ref|ZP_18460557.1| RNAse H domain protein, YqgF family [Enterococcus faecium 504]
gi|430819474|ref|ZP_19438126.1| RNAse H-fold protein YqgF [Enterococcus faecium E0045]
gi|430825925|ref|ZP_19444123.1| RNAse H-fold protein YqgF [Enterococcus faecium E0164]
gi|430828020|ref|ZP_19446150.1| RNAse H-fold protein YqgF [Enterococcus faecium E0269]
gi|430834341|ref|ZP_19452348.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E0679]
gi|430835393|ref|ZP_19453383.1| RNAse H-fold protein YqgF [Enterococcus faecium E0680]
gi|430838536|ref|ZP_19456482.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E0688]
gi|430841881|ref|ZP_19459798.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E1007]
gi|430843610|ref|ZP_19461509.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E1050]
gi|430857709|ref|ZP_19475342.1| RNAse H-fold protein YqgF [Enterococcus faecium E1552]
gi|430860641|ref|ZP_19478240.1| RNAse H-fold protein YqgF [Enterococcus faecium E1573]
gi|430882936|ref|ZP_19484141.1| RNAse H-fold protein YqgF [Enterococcus faecium E1575]
gi|431033443|ref|ZP_19491289.1| RNAse H-fold protein YqgF [Enterococcus faecium E1590]
gi|431077742|ref|ZP_19495207.1| RNAse H-fold protein YqgF [Enterococcus faecium E1604]
gi|431149583|ref|ZP_19499441.1| RNAse H-fold protein YqgF [Enterococcus faecium E1620]
gi|431230258|ref|ZP_19502461.1| RNAse H-fold protein YqgF [Enterococcus faecium E1622]
gi|431301479|ref|ZP_19507798.1| RNAse H-fold protein YqgF [Enterococcus faecium E1626]
gi|431514097|ref|ZP_19516145.1| RNAse H-fold protein YqgF [Enterococcus faecium E1634]
gi|431586459|ref|ZP_19520974.1| RNAse H-fold protein YqgF [Enterococcus faecium E1861]
gi|431736986|ref|ZP_19525942.1| RNAse H-fold protein YqgF [Enterococcus faecium E1972]
gi|431741179|ref|ZP_19530086.1| RNAse H-fold protein YqgF [Enterococcus faecium E2039]
gi|431746653|ref|ZP_19535478.1| RNAse H-fold protein YqgF [Enterococcus faecium E2134]
gi|431752425|ref|ZP_19541108.1| RNAse H-fold protein YqgF [Enterococcus faecium E2620]
gi|431762531|ref|ZP_19551093.1| RNAse H-fold protein YqgF [Enterococcus faecium E3548]
gi|431764596|ref|ZP_19553133.1| RNAse H-fold protein YqgF [Enterococcus faecium E4215]
gi|431767653|ref|ZP_19556100.1| RNAse H-fold protein YqgF [Enterococcus faecium E1321]
gi|431775316|ref|ZP_19563589.1| RNAse H-fold protein YqgF [Enterococcus faecium E2560]
gi|431780229|ref|ZP_19568414.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E4389]
gi|431781473|ref|ZP_19569620.1| RNAse H-fold protein YqgF [Enterococcus faecium E6012]
gi|431786152|ref|ZP_19574168.1| RNAse H-fold protein YqgF [Enterococcus faecium E6045]
gi|447912163|ref|YP_007393575.1| Putative Holliday junction resolvase [Enterococcus faecium NRRL
B-2354]
gi|227178706|gb|EEI59678.1| crossover junction endodeoxyribonuclease [Enterococcus faecium
TX1330]
gi|257818292|gb|EEV45620.1| conserved hypothetical protein [Enterococcus faecium 1,231,502]
gi|257822760|gb|EEV49692.1| conserved hypothetical protein [Enterococcus faecium 1,141,733]
gi|257831245|gb|EEV57852.1| conserved hypothetical protein [Enterococcus faecium 1,231,408]
gi|257831846|gb|EEV58267.1| conserved hypothetical protein [Enterococcus faecium Com12]
gi|257835807|gb|EEV60881.1| conserved hypothetical protein [Enterococcus faecium Com15]
gi|291588488|gb|EFF20322.1| conserved hypothetical protein [Enterococcus faecium E1071]
gi|291602732|gb|EFF32946.1| conserved hypothetical protein [Enterococcus faecium E1039]
gi|291608879|gb|EFF38159.1| conserved hypothetical protein [Enterococcus faecium E980]
gi|402923728|gb|EJX43993.1| RNAse H domain protein, YqgF family [Enterococcus faecium S447]
gi|402929266|gb|EJX49043.1| RNAse H domain protein, YqgF family [Enterococcus faecium R499]
gi|402935098|gb|EJX54381.1| RNAse H domain protein, YqgF family [Enterococcus faecium R496]
gi|402943150|gb|EJX61662.1| RNAse H domain protein, YqgF family [Enterococcus faecium R446]
gi|402949452|gb|EJX67511.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1986]
gi|402952445|gb|EJX70259.1| RNAse H domain protein, YqgF family [Enterococcus faecium P1140]
gi|402982271|gb|EJX97745.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV168]
gi|402983167|gb|EJX98586.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV161]
gi|402985117|gb|EJY00352.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV165]
gi|402986973|gb|EJY02070.1| RNAse H domain protein, YqgF family [Enterococcus faecium ERV102]
gi|403000985|gb|EJY15067.1| RNAse H domain protein, YqgF family [Enterococcus faecium C621]
gi|403001838|gb|EJY15858.1| RNAse H domain protein, YqgF family [Enterococcus faecium E422]
gi|403008743|gb|EJY22235.1| RNAse H domain protein, YqgF family [Enterococcus faecium 515]
gi|403034179|gb|EJY45645.1| RNAse H domain protein, YqgF family [Enterococcus faecium 505]
gi|403041039|gb|EJY52079.1| RNAse H domain protein, YqgF family [Enterococcus faecium 504]
gi|404454672|gb|EKA01584.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD4E]
gi|404463930|gb|EKA09505.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD2E]
gi|404468561|gb|EKA13496.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD1E]
gi|410734720|gb|EKQ76638.1| Holliday junction resolvase-like protein [Enterococcus sp. GMD5E]
gi|430440546|gb|ELA50793.1| RNAse H-fold protein YqgF [Enterococcus faecium E0045]
gi|430445633|gb|ELA55363.1| RNAse H-fold protein YqgF [Enterococcus faecium E0164]
gi|430484101|gb|ELA61136.1| RNAse H-fold protein YqgF [Enterococcus faecium E0269]
gi|430485572|gb|ELA62478.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E0679]
gi|430489384|gb|ELA65998.1| RNAse H-fold protein YqgF [Enterococcus faecium E0680]
gi|430491778|gb|ELA68230.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E0688]
gi|430493699|gb|ELA69990.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E1007]
gi|430497469|gb|ELA73506.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E1050]
gi|430546919|gb|ELA86861.1| RNAse H-fold protein YqgF [Enterococcus faecium E1552]
gi|430552039|gb|ELA91789.1| RNAse H-fold protein YqgF [Enterococcus faecium E1573]
gi|430556493|gb|ELA95991.1| RNAse H-fold protein YqgF [Enterococcus faecium E1575]
gi|430564544|gb|ELB03728.1| RNAse H-fold protein YqgF [Enterococcus faecium E1590]
gi|430566157|gb|ELB05278.1| RNAse H-fold protein YqgF [Enterococcus faecium E1604]
gi|430574244|gb|ELB13022.1| RNAse H-fold protein YqgF [Enterococcus faecium E1622]
gi|430575472|gb|ELB14188.1| RNAse H-fold protein YqgF [Enterococcus faecium E1620]
gi|430580669|gb|ELB19136.1| RNAse H-fold protein YqgF [Enterococcus faecium E1626]
gi|430586353|gb|ELB24614.1| RNAse H-fold protein YqgF [Enterococcus faecium E1634]
gi|430593637|gb|ELB31623.1| RNAse H-fold protein YqgF [Enterococcus faecium E1861]
gi|430599362|gb|ELB37068.1| RNAse H-fold protein YqgF [Enterococcus faecium E1972]
gi|430602290|gb|ELB39868.1| RNAse H-fold protein YqgF [Enterococcus faecium E2039]
gi|430608555|gb|ELB45801.1| RNAse H-fold protein YqgF [Enterococcus faecium E2134]
gi|430613916|gb|ELB50915.1| RNAse H-fold protein YqgF [Enterococcus faecium E2620]
gi|430625223|gb|ELB61873.1| RNAse H-fold protein YqgF [Enterococcus faecium E3548]
gi|430630606|gb|ELB66961.1| RNAse H-fold protein YqgF [Enterococcus faecium E1321]
gi|430630736|gb|ELB67085.1| RNAse H-fold protein YqgF [Enterococcus faecium E4215]
gi|430640708|gb|ELB76542.1| YqgF family RNAse H domain-containing protein [Enterococcus faecium
E4389]
gi|430643032|gb|ELB78788.1| RNAse H-fold protein YqgF [Enterococcus faecium E2560]
gi|430646225|gb|ELB81719.1| RNAse H-fold protein YqgF [Enterococcus faecium E6045]
gi|430649418|gb|ELB84795.1| RNAse H-fold protein YqgF [Enterococcus faecium E6012]
gi|445187872|gb|AGE29514.1| Putative Holliday junction resolvase [Enterococcus faecium NRRL
B-2354]
Length = 143
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + + ++++ + E +L E+ + E D F++GLPK
Sbjct: 4 MGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + S P++ S ++ + V DE T+ +A +RM+ S++ R+
Sbjct: 64 NMNNSIGPRAEASMSYGEKIKELFS---LPVDYQDERLTTVQA-ERMLVEQANTSRAKRK 119
Query: 179 TKTDAYAAVILLERYFSMSGQ 199
D AAV++L+ Y SG+
Sbjct: 120 KVIDKLAAVMILQNYLDGSGK 140
>gi|416141276|ref|ZP_11599372.1| Putative Holliday junction resolvase [Enterococcus faecium E4452]
gi|364090229|gb|EHM32842.1| Putative Holliday junction resolvase [Enterococcus faecium E4452]
Length = 140
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/141 (26%), Positives = 73/141 (51%), Gaps = 11/141 (7%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
+G+D+G G+A+S G+ + + ++++ + E +L E+ + E D F++GLPK
Sbjct: 1 MGLDVGSKTVGVAVSDPFGWTAQGVEIIRINEAEEEFGFDRLKELVAQYEVDRFVVGLPK 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMI--NMGLSKSARQ 178
+ + S P++ S ++ + V DE T+ +A +RM+ S++ R+
Sbjct: 61 NMNNSIGPRAEASMSYGEKIKELFS---LPVDYQDERLTTVQA-ERMLVEQANTSRAKRK 116
Query: 179 TKTDAYAAVILLERYFSMSGQ 199
D AAV++L+ Y SG+
Sbjct: 117 KVIDKLAAVMILQNYLDGSGK 137
>gi|332286753|ref|YP_004418664.1| holliday junction resolvase [Pusillimonas sp. T7-7]
gi|330430706|gb|AEC22040.1| holliday junction resolvase [Pusillimonas sp. T7-7]
Length = 137
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 40/132 (30%), Positives = 62/132 (46%), Gaps = 14/132 (10%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVL-KLRGEKLELQLLEIAQREETDEFIIGLPKSW 122
L D G + G+A+ RPL +L + E+ + ++ + + D+ ++GLP +
Sbjct: 10 LAFDYGTKKIGVAIGNTLTRQARPLDILFPVTREQRFSAIAKLLKDWQPDKVVVGLPLAT 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE S + R A +L R G L+DE +S EA + N T D
Sbjct: 70 DGSEQYASLRCRRFANQLHGRF---GVETVLVDERGSSMEAQQMLGN--------NTDDD 118
Query: 183 AYAAVILLERYF 194
A AA I+L+RY
Sbjct: 119 AVAAAIILQRYL 130
>gi|343518154|ref|ZP_08755148.1| RNAse H domain protein, YqgF family [Haemophilus pittmaniae HK 85]
gi|343393950|gb|EGV06500.1| RNAse H domain protein, YqgF family [Haemophilus pittmaniae HK 85]
Length = 141
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 3/81 (3%)
Query: 115 IIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSK 174
++GLP + DG+E P + + R A RL R V L DE T+ EA D + + G +
Sbjct: 58 VVGLPLNMDGTEQPLTLRARKFANRLQGRF---NIPVQLQDERLTTTEARDEIFSRGGFR 114
Query: 175 SARQTKTDAYAAVILLERYFS 195
+ ++K D +A ++LE +F+
Sbjct: 115 ALNKSKVDGISACLILESWFA 135
>gi|339479118|gb|ABE95583.1| Endonuclease involved in recombination [Bifidobacterium breve
UCC2003]
Length = 154
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLEL--QLLEIAQREETDEFIIGLPKS 121
LGVDLG +R GLALS P + + G+ ++L + + E I+GLP
Sbjct: 8 LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVVEDEHVTHIIVGLPLQ 67
Query: 122 WDGSETPQSNKVRSVAGRLAVRA-AERGW-------RVYLLDEHRTSAEAVDRMINMGLS 173
DG+E + K R A L R +ER +V L+DE T+ A ++ +
Sbjct: 68 MDGTEGKSAKKARRWAVNLEKRLRSEREESQEPQIPQVVLVDERLTTVSAHRQLFEAQKA 127
Query: 174 KSARQTKTDAYAAVILLERYFSMSGQ 199
+ + D +AV++L+ +G+
Sbjct: 128 STKHRPMVDQQSAVVILQTALDRAGE 153
>gi|295111267|emb|CBL28017.1| conserved hypothetical protein TIGR00250 [Synergistetes bacterium
SGP1]
Length = 146
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/146 (29%), Positives = 68/146 (46%), Gaps = 18/146 (12%)
Query: 63 GFSLGVDLGLSRTGLALS-------KGFCVRPLTVLKLRG---EKLELQLLEIAQREETD 112
G L +D+G +R G A+S +G V P V+ G K E L++ A
Sbjct: 7 GRVLALDVGSARVGAAISDPMRLIAQGLAVWP--VVDRDGGWRRKFEACLVQYA----PT 60
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGL 172
++G+P DG+ P++ +V + L RA DE T+ A MI G+
Sbjct: 61 LVLVGMPTRTDGTRGPEAERVAKLVDLL--RAGHPDLAFDTWDERFTTVMAHRAMIEGGV 118
Query: 173 SKSARQTKTDAYAAVILLERYFSMSG 198
S+S R+ + D AAV++LE + + G
Sbjct: 119 SRSGRRQRVDKIAAVLILESWLARQG 144
>gi|30264456|ref|NP_846833.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Ames]
gi|42783515|ref|NP_980762.1| Holliday junction resolvase-like protein [Bacillus cereus ATCC
10987]
gi|47529912|ref|YP_021261.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
'Ames Ancestor']
gi|49187278|ref|YP_030530.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Sterne]
gi|49478623|ref|YP_038437.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar konkukian str. 97-27]
gi|52141120|ref|YP_085709.1| Holliday junction resolvase-like protein [Bacillus cereus E33L]
gi|65321754|ref|ZP_00394713.1| COG0816: Predicted endonuclease involved in recombination (possible
Holliday junction resolvase in Mycoplasmas and B.
subtilis) [Bacillus anthracis str. A2012]
gi|118479548|ref|YP_896699.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
str. Al Hakam]
gi|165872754|ref|ZP_02217382.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0488]
gi|167638500|ref|ZP_02396776.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0193]
gi|177653215|ref|ZP_02935467.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0174]
gi|190566960|ref|ZP_03019876.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
Tsiankovskii-I]
gi|196034479|ref|ZP_03101888.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W]
gi|196039375|ref|ZP_03106681.1| conserved hypothetical protein TIGR00250 [Bacillus cereus
NVH0597-99]
gi|196044968|ref|ZP_03112202.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108]
gi|218905581|ref|YP_002453415.1| Holliday junction resolvase-like protein [Bacillus cereus AH820]
gi|225866368|ref|YP_002751746.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102]
gi|227817165|ref|YP_002817174.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
CDC 684]
gi|228917020|ref|ZP_04080580.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|228929431|ref|ZP_04092452.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228935707|ref|ZP_04098520.1| Holliday junction resolvase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228948100|ref|ZP_04110384.1| Holliday junction resolvase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|229093457|ref|ZP_04224560.1| Holliday junction resolvase [Bacillus cereus Rock3-42]
gi|229123927|ref|ZP_04253119.1| Holliday junction resolvase [Bacillus cereus 95/8201]
gi|229158002|ref|ZP_04286073.1| Holliday junction resolvase [Bacillus cereus ATCC 4342]
gi|229186626|ref|ZP_04313787.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1]
gi|229603692|ref|YP_002868674.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
A0248]
gi|254684142|ref|ZP_05148002.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
CNEVA-9066]
gi|254724687|ref|ZP_05186470.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
A1055]
gi|254736489|ref|ZP_05194195.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Western North America USA6153]
gi|254741527|ref|ZP_05199214.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Kruger B]
gi|254757706|ref|ZP_05209733.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
Australia 94]
gi|300119207|ref|ZP_07056904.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1]
gi|301055895|ref|YP_003794106.1| holliday junction resolvase-like protein [Bacillus cereus biovar
anthracis str. CI]
gi|376268284|ref|YP_005120996.1| Putative Holliday junction resolvase [Bacillus cereus F837/76]
gi|384182206|ref|YP_005567968.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|386738276|ref|YP_006211457.1| Putative Holliday junction resolvase [Bacillus anthracis str.
H9401]
gi|402555482|ref|YP_006596753.1| Holliday junction resolvase-like protein [Bacillus cereus FRI-35]
gi|421638456|ref|ZP_16079052.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
BF1]
gi|423549874|ref|ZP_17526201.1| RNAse H-fold protein YqgF [Bacillus cereus ISP3191]
gi|423612588|ref|ZP_17588449.1| RNAse H-fold protein YqgF [Bacillus cereus VD107]
gi|33301603|sp|Q81LK2.1|RUVX_BACAN RecName: Full=Putative Holliday junction resolvase
gi|62900956|sp|Q634F8.1|RUVX_BACCZ RecName: Full=Putative Holliday junction resolvase
gi|62900978|sp|Q6HDD9.1|RUVX_BACHK RecName: Full=Putative Holliday junction resolvase
gi|62900993|sp|Q730E7.1|RUVX_BACC1 RecName: Full=Putative Holliday junction resolvase
gi|167012692|sp|A0RIZ9.1|RUVX_BACAH RecName: Full=Putative Holliday junction resolvase
gi|226725484|sp|B7JPX2.1|RUVX_BACC0 RecName: Full=Putative Holliday junction resolvase
gi|254767494|sp|C3P975.1|RUVX_BACAA RecName: Full=Putative Holliday junction resolvase
gi|254767495|sp|C3L5Z2.1|RUVX_BACAC RecName: Full=Putative Holliday junction resolvase
gi|254767496|sp|C1EST1.1|RUVX_BACC3 RecName: Full=Putative Holliday junction resolvase
gi|30259114|gb|AAP28319.1| RNAse H-fold protein YqgF [Bacillus anthracis str. Ames]
gi|42739444|gb|AAS43370.1| conserved hypothetical protein TIGR00250 [Bacillus cereus ATCC
10987]
gi|47505060|gb|AAT33736.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
'Ames Ancestor']
gi|49181205|gb|AAT56581.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
Sterne]
gi|49330179|gb|AAT60825.1| conserved hypothetical protein, possible Holliday junction
resolvase [Bacillus thuringiensis serovar konkukian str.
97-27]
gi|51974589|gb|AAU16139.1| conserved hypothetical protein; possible Holliday junction
resolvase [Bacillus cereus E33L]
gi|118418773|gb|ABK87192.1| conserved hypothetical protein [Bacillus thuringiensis str. Al
Hakam]
gi|164711530|gb|EDR17079.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0488]
gi|167513348|gb|EDR88718.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0193]
gi|172081497|gb|EDT66569.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0174]
gi|190561951|gb|EDV15920.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
Tsiankovskii-I]
gi|195993021|gb|EDX56980.1| conserved hypothetical protein TIGR00250 [Bacillus cereus W]
gi|196024456|gb|EDX63129.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB108]
gi|196030002|gb|EDX68603.1| conserved hypothetical protein TIGR00250 [Bacillus cereus
NVH0597-99]
gi|218535867|gb|ACK88265.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH820]
gi|225789273|gb|ACO29490.1| conserved hypothetical protein TIGR00250 [Bacillus cereus 03BB102]
gi|227007492|gb|ACP17235.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
CDC 684]
gi|228596885|gb|EEK54544.1| Holliday junction resolvase [Bacillus cereus BGSC 6E1]
gi|228625455|gb|EEK82211.1| Holliday junction resolvase [Bacillus cereus ATCC 4342]
gi|228659229|gb|EEL14877.1| Holliday junction resolvase [Bacillus cereus 95/8201]
gi|228689928|gb|EEL43732.1| Holliday junction resolvase [Bacillus cereus Rock3-42]
gi|228811458|gb|EEM57795.1| Holliday junction resolvase [Bacillus thuringiensis serovar
monterrey BGSC 4AJ1]
gi|228823945|gb|EEM69764.1| Holliday junction resolvase [Bacillus thuringiensis serovar
andalousiensis BGSC 4AW1]
gi|228830219|gb|EEM75835.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pondicheriensis BGSC 4BA1]
gi|228842627|gb|EEM87715.1| Holliday junction resolvase [Bacillus thuringiensis serovar
pulsiensis BGSC 4CC1]
gi|229268100|gb|ACQ49737.1| conserved hypothetical protein TIGR00250 [Bacillus anthracis str.
A0248]
gi|298723427|gb|EFI64172.1| Holliday junction resolvase-like protein [Bacillus cereus SJ1]
gi|300378064|gb|ADK06968.1| holliday junction resolvase-like protein [Bacillus cereus biovar
anthracis str. CI]
gi|324328290|gb|ADY23550.1| Holliday junction resolvase-like protein [Bacillus thuringiensis
serovar finitimus YBT-020]
gi|364514084|gb|AEW57483.1| Putative Holliday junction resolvase [Bacillus cereus F837/76]
gi|384388128|gb|AFH85789.1| Putative Holliday junction resolvase [Bacillus anthracis str.
H9401]
gi|401189490|gb|EJQ96540.1| RNAse H-fold protein YqgF [Bacillus cereus ISP3191]
gi|401246177|gb|EJR52529.1| RNAse H-fold protein YqgF [Bacillus cereus VD107]
gi|401796692|gb|AFQ10551.1| Holliday junction resolvase-like protein [Bacillus cereus FRI-35]
gi|403394882|gb|EJY92122.1| Holliday junction resolvase-like protein [Bacillus anthracis str.
BF1]
Length = 137
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G+ + L +K+ E+ + ++ E+ ++ + D+ ++GLPK
Sbjct: 4 LGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ +G+ P+ + A L V + DE ++ A +I+ +S+ R+
Sbjct: 64 NMNGTIGPRGEACQQFAENLRELLQ---LDVVMWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ +
Sbjct: 121 IDKMAAVVILQGFL 134
>gi|206975936|ref|ZP_03236846.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97]
gi|217961876|ref|YP_002340446.1| Holliday junction resolvase-like protein [Bacillus cereus AH187]
gi|222097829|ref|YP_002531886.1| holliday junction resolvase-like protein [Bacillus cereus Q1]
gi|229141123|ref|ZP_04269665.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26]
gi|375286390|ref|YP_005106829.1| hypothetical protein BCN_4296 [Bacillus cereus NC7401]
gi|423354877|ref|ZP_17332502.1| RNAse H-fold protein YqgF [Bacillus cereus IS075]
gi|423373654|ref|ZP_17350993.1| RNAse H-fold protein YqgF [Bacillus cereus AND1407]
gi|423570624|ref|ZP_17546869.1| RNAse H-fold protein YqgF [Bacillus cereus MSX-A12]
gi|226725487|sp|B7HQE4.1|RUVX_BACC7 RecName: Full=Putative Holliday junction resolvase
gi|254767497|sp|B9IYF1.1|RUVX_BACCQ RecName: Full=Putative Holliday junction resolvase
gi|206745688|gb|EDZ57085.1| conserved hypothetical protein TIGR00250 [Bacillus cereus H3081.97]
gi|217063507|gb|ACJ77757.1| conserved hypothetical protein TIGR00250 [Bacillus cereus AH187]
gi|221241887|gb|ACM14597.1| conserved hypothetical protein [Bacillus cereus Q1]
gi|228642401|gb|EEK98690.1| Holliday junction resolvase [Bacillus cereus BDRD-ST26]
gi|358354917|dbj|BAL20089.1| conserved hypothetical protein [Bacillus cereus NC7401]
gi|401085761|gb|EJP93997.1| RNAse H-fold protein YqgF [Bacillus cereus IS075]
gi|401095858|gb|EJQ03911.1| RNAse H-fold protein YqgF [Bacillus cereus AND1407]
gi|401203820|gb|EJR10655.1| RNAse H-fold protein YqgF [Bacillus cereus MSX-A12]
Length = 137
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 69/134 (51%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G+ + L +K+ E+ + ++ E+ ++ + D+ ++GLPK
Sbjct: 4 LGLDVGTKTVGVAISDEMGWTAQGLETIKINEERGQFGFDRISELVKQYDVDKIVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ +G+ P+ + A L V + DE ++ A +I+ +S+ R+
Sbjct: 64 NMNGTIGPRGEACQQFAENLRELLQ---LDVVMWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ +
Sbjct: 121 IDKMAAVVILQGFL 134
>gi|428780869|ref|YP_007172655.1| RNAse H-fold protein YqgF [Dactylococcopsis salina PCC 8305]
gi|428695148|gb|AFZ51298.1| RNAse H-fold protein YqgF [Dactylococcopsis salina PCC 8305]
Length = 145
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 45/136 (33%), Positives = 68/136 (50%), Gaps = 11/136 (8%)
Query: 65 SLGVDLGLSRTGLALS--KGFCVRPLTVLKLRG---EKLELQLLEIAQREETDEFIIGLP 119
+LG+D+G R G+A G PLT + G + +LQ L IA+RE T +IGLP
Sbjct: 7 ALGLDIGKKRIGVAGCDGTGLIATPLTTITRVGFTDDVAKLQQL-IAEREVTI-LVIGLP 64
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRM-INMGLSKSARQ 178
S G Q+ + A RL A+ + +DE TS EA ++ G S +
Sbjct: 65 YSLAGEWGKQAQRTEKYAERL---ASVLKLPIEYMDERLTSIEAETQLKTKRGFSPRRDK 121
Query: 179 TKTDAYAAVILLERYF 194
+ DA+AA I+L+++
Sbjct: 122 AQIDAHAAAIILQQWL 137
>gi|423395319|ref|ZP_17372520.1| RNAse H-fold protein YqgF [Bacillus cereus BAG2X1-1]
gi|423406194|ref|ZP_17383343.1| RNAse H-fold protein YqgF [Bacillus cereus BAG2X1-3]
gi|401654730|gb|EJS72269.1| RNAse H-fold protein YqgF [Bacillus cereus BAG2X1-1]
gi|401660188|gb|EJS77670.1| RNAse H-fold protein YqgF [Bacillus cereus BAG2X1-3]
Length = 137
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/134 (24%), Positives = 68/134 (50%), Gaps = 8/134 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKLRGEKLEL---QLLEIAQREETDEFIIGLPK 120
LG+D+G G+A+S G+ + L +K+ E+ ++ E+ ++ + D+ ++GLPK
Sbjct: 4 LGLDVGTKTVGVAMSDEMGWTAQGLETIKINEERGHFGFDRISELVKQYDVDKIVVGLPK 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ +G+ P+ + A L V + DE ++ A +I+ +S+ R+
Sbjct: 64 NMNGTIGPRGEACQQFAENLRELLQ---LEVVMWDERLSTMAAERLLISADVSRKKRKQV 120
Query: 181 TDAYAAVILLERYF 194
D AAV++L+ +
Sbjct: 121 IDKMAAVVILQGFL 134
>gi|146300283|ref|YP_001194874.1| Holliday junction resolvase-like protein [Flavobacterium johnsoniae
UW101]
gi|189046096|sp|A5FGX1.1|RUVX_FLAJO RecName: Full=Putative Holliday junction resolvase
gi|146154701|gb|ABQ05555.1| Holliday junction resolvase YqgF [Flavobacterium johnsoniae UW101]
Length = 138
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/132 (26%), Positives = 61/132 (46%), Gaps = 4/132 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
L +D G RTG+A++ + + + L L + +E+ + +IG PK +G
Sbjct: 5 LSIDYGQKRTGIAVTDEMQIIASGLTTIPTHTLIDFLKDYFAKEKVEAVLIGEPKQMNGQ 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK--TDA 183
+ ++ + + + +V +DE TS A M++ GLSK RQ K D
Sbjct: 65 PSESASVINGFVTHFSNIFPD--MKVIRVDERFTSKMAFQTMLDSGLSKKQRQNKGLIDE 122
Query: 184 YAAVILLERYFS 195
+A I+L+ Y S
Sbjct: 123 ISATIMLQDYLS 134
>gi|293610120|ref|ZP_06692421.1| conserved hypothetical protein [Acinetobacter sp. SH024]
gi|292827352|gb|EFF85716.1| conserved hypothetical protein [Acinetobacter sp. SH024]
Length = 146
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G QLL+I + + D F++GLP +
Sbjct: 10 MAFDFGTQKMGMAIGQSSIESTNPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGLPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + ++DE T+ EA + + A++ D
Sbjct: 70 DDSESELSTRARKFARRL---RHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLSAD 126
Query: 183 AYAAVILLERYF 194
++AA +L++ ++
Sbjct: 127 SFAAALLIQSWY 138
>gi|291456670|ref|ZP_06596060.1| putative Holliday junction resolvase [Bifidobacterium breve DSM
20213 = JCM 1192]
gi|384197062|ref|YP_005582806.1| RNAse H domain protein, YqgF family [Bifidobacterium breve
ACS-071-V-Sch8b]
gi|291381947|gb|EFE89465.1| putative Holliday junction resolvase [Bifidobacterium breve DSM
20213 = JCM 1192]
gi|333109476|gb|AEF26492.1| RNAse H domain protein, YqgF family [Bifidobacterium breve
ACS-071-V-Sch8b]
Length = 150
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 67/146 (45%), Gaps = 12/146 (8%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLEL--QLLEIAQREETDEFIIGLPKS 121
LGVDLG +R GLALS P + + G+ ++L + + E I+GLP
Sbjct: 4 LGVDLGNARVGLALSDPELTFAHPAGNIHVAGDYFFAIDEVLNVVEDEHVTHIIVGLPLQ 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRA-AERGW-------RVYLLDEHRTSAEAVDRMINMGLS 173
DG+E + K R A L R +ER +V L+DE T+ A ++ +
Sbjct: 64 MDGTEGKSAKKARRWAVNLEKRLRSEREESQEPQIPQVVLVDERLTTVSAHRQLFEAQKA 123
Query: 174 KSARQTKTDAYAAVILLERYFSMSGQ 199
+ + D +AV++L+ +G+
Sbjct: 124 STKHRPMVDQQSAVVILQTALDRAGE 149
>gi|425746174|ref|ZP_18864206.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-323]
gi|425486823|gb|EKU53188.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-323]
Length = 137
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 33/132 (25%), Positives = 67/132 (50%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G +LL+I + + F++GLP +
Sbjct: 1 MAFDFGTQKMGMAIGQSTIESSNPLPLFAMKDGIPDWDKLLKIVKEWQPTLFLVGLPLNM 60
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + + W ++DE T+ EA + + + A++ D
Sbjct: 61 DDSESELSARARKFARRLRHQTNIQTW---MVDERLTTREAREELESYQSKGQAKRLSAD 117
Query: 183 AYAAVILLERYF 194
++AA +L++ ++
Sbjct: 118 SFAAALLIQSWY 129
>gi|49474241|ref|YP_032283.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse]
gi|62900974|sp|Q6FZS7.1|RUVX_BARQU RecName: Full=Putative Holliday junction resolvase
gi|49239745|emb|CAF26127.1| hypothetical protein BQ06360 [Bartonella quintana str. Toulouse]
Length = 159
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 36/128 (28%), Positives = 65/128 (50%), Gaps = 6/128 (4%)
Query: 67 GVDLGLSRTGLALS-KGFCV-RPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPKSWD 123
G+DLG G+A+S +G P +VL+ + ++ + L++I RE IIGLP + +
Sbjct: 21 GLDLGKKTIGIAVSDRGLTFSNPRSVLQRKKLTVDARTLIQIFDRENVGVVIIGLPLNMN 80
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
GS P++ R+ + A DE ++ A ++ M +S++ R T+ D+
Sbjct: 81 GSSGPRAQATRTFVNNM---EAYTEIPFVFWDERLSTIAAERSLLEMDVSRAKRATRIDS 137
Query: 184 YAAVILLE 191
AA +L+
Sbjct: 138 AAAAFILQ 145
>gi|414173915|ref|ZP_11428542.1| RNAse H-fold protein YqgF [Afipia broomeae ATCC 49717]
gi|410890549|gb|EKS38348.1| RNAse H-fold protein YqgF [Afipia broomeae ATCC 49717]
Length = 163
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 42/139 (30%), Positives = 69/139 (49%), Gaps = 9/139 (6%)
Query: 58 SLWRG-GFSLGVDLGLSRTGLALS---KGFCVRPLTVLKLRGEKLELQLLEIAQREETDE 113
+LW G +G+DLG G+A+S + T+ + +LL ++
Sbjct: 13 ALWPARGALIGLDLGTKTIGVAVSDPDRKLATGIETIQRKTFTADAKRLLSLSAERNVVG 72
Query: 114 FIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDR-MINMGL 172
FI+GLP + DGSE P++ R+ A A + L DE R S AV+R +I+M +
Sbjct: 73 FILGLPINMDGSEGPRAQSTRAFARNF---AKLTDLAIGLWDE-RLSTVAVERELIDMDM 128
Query: 173 SKSARQTKTDAYAAVILLE 191
S++ R D +AA+ +L+
Sbjct: 129 SRAKRAKVIDEHAAIFILQ 147
>gi|363581650|ref|ZP_09314460.1| Holliday junction resolvase YqgF [Flavobacteriaceae bacterium HQM9]
Length = 136
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 32/132 (24%), Positives = 67/132 (50%), Gaps = 4/132 (3%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
+ +D G RTG+A++ + + + +L + L + AQ + + F++G PK G
Sbjct: 5 VAIDYGGKRTGIAVTDDLQMIASGLTTVATNELMIFLKDYAQLNKIEAFVVGEPKRLHGE 64
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKT--DA 183
+ +++ +L+ G +++ +DE TS A + MI G+SK R+ K+ D
Sbjct: 65 ASSIEAEIKKFLEQLSKEFP--GIKIHRVDERFTSKIAFEAMIKSGISKKKRRDKSLIDK 122
Query: 184 YAAVILLERYFS 195
+A ++L+ + +
Sbjct: 123 ISATLILQDFLN 134
>gi|209964820|ref|YP_002297735.1| hypothetical protein RC1_1518 [Rhodospirillum centenum SW]
gi|226731644|sp|B6IN25.1|RUVX_RHOCS RecName: Full=Putative Holliday junction resolvase
gi|209958286|gb|ACI98922.1| conserved hypothetical protein [Rhodospirillum centenum SW]
Length = 188
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 48/151 (31%), Positives = 71/151 (47%), Gaps = 7/151 (4%)
Query: 56 KDSLWRGGFSLGVDLGLSRTGLALSK-GFCV-RPLTVLKLRGEKLELQLLEIAQRE-ETD 112
K SL R G +G+DLG GLA+S G V P+ ++ + Q L A R+ +
Sbjct: 10 KASLPRNGRLMGLDLGEKTIGLAVSDPGLSVASPVGTIRRTKFTQDAQELARAMRDRDVR 69
Query: 113 EFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGW--RVYLLDEHRTSAEAVDR-MIN 169
++GLP + DG+E P+ VR + L R G+ + DE R S AV+R MI
Sbjct: 70 ALVVGLPVNMDGTEGPRCQSVREFSRLLLQRPQLFGFEPEIAFWDE-RLSTSAVERMMIG 128
Query: 170 MGLSKSARQTKTDAYAAVILLERYFSMSGQG 200
+++ R D AA +L+ QG
Sbjct: 129 WDMTRKRRDEVVDKMAAAYILQGALDRLRQG 159
>gi|357588745|ref|ZP_09127411.1| Holliday junction resolvase-like protein [Corynebacterium nuruki
S6-4]
Length = 187
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 43/162 (26%), Positives = 75/162 (46%), Gaps = 11/162 (6%)
Query: 41 LSSVEEFLPNATRRKKDSLWRGGFSLGVDLGLSRTGLALSK--GFCVRPLTVL---KLRG 95
L + ++ P + R D RG L +D+G R G+ALS G PL + K G
Sbjct: 6 LGTPDDATPVSDRPGPDDPGRG-RRLALDVGTVRIGVALSDPDGILATPLETVAADKTSG 64
Query: 96 EKLELQ---LLEIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVY 152
K + +L++ E ++GLP S T + + + A ++ A RG V
Sbjct: 65 AKPGAEFDRVLQLIDENFIVEVVVGLPVSLHSRRTASTRRAENYAAKIG--RARRGIPVR 122
Query: 153 LLDEHRTSAEAVDRMINMGLSKSARQTKTDAYAAVILLERYF 194
L+DE ++ A M + G+++ +++ D AAV +L+ +
Sbjct: 123 LVDERMSTVAATSAMHSSGVNQKKGRSRIDQAAAVHILQGWL 164
>gi|342732511|ref|YP_004771350.1| holliday junction resolvase-like protein [Candidatus Arthromitus
sp. SFB-mouse-Japan]
gi|342329966|dbj|BAK56608.1| holliday junction resolvase-like protein [Candidatus Arthromitus
sp. SFB-mouse-Japan]
Length = 137
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 104 EIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEA 163
+I + + + ++GLPK+ +GS Q KV L + + G ++ +DE T+ A
Sbjct: 43 KIIKDNKVSKLVVGLPKNMNGSIGFQGEKVIKFCEDLE-KILDEGIKIEFMDERLTTVLA 101
Query: 164 VDRMINMGLSKSARQTKTDAYAAVILLERYFSM 196
+ M+ +S+ R+ D AA I+L+ Y +M
Sbjct: 102 NNFMLEADMSRKKRKNIVDKMAAQIILQDYLNM 134
>gi|359394519|ref|ZP_09187572.1| Putative Holliday junction resolvase [Halomonas boliviensis LC1]
gi|357971766|gb|EHJ94211.1| Putative Holliday junction resolvase [Halomonas boliviensis LC1]
Length = 151
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 39/133 (29%), Positives = 60/133 (45%), Gaps = 6/133 (4%)
Query: 66 LGVDLGLSRTGLALSKGF--CVRPLTVLKLRGEKLELQLLE-IAQREETDEFIIGLPKSW 122
L D G R G+A+ R LT L R + ++ + + D ++GLP +
Sbjct: 10 LAFDYGTRRIGVAVGNELLRSARELTPLTARDGIPDWSVVSRLLNEWQPDLLVVGLPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DGSE+ S + R RL R G ++DE T+ EA G + RQ D
Sbjct: 70 DGSESDMSTRARKFGNRLHGRF---GKPCEMVDERGTTREAKMIAREAGHKGNYRQDSVD 126
Query: 183 AYAAVILLERYFS 195
AA+++LE +F+
Sbjct: 127 GIAAILILEGWFA 139
>gi|320093739|ref|ZP_08025598.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
178 str. F0338]
gi|319979324|gb|EFW10815.1| putative Holliday junction resolvase [Actinomyces sp. oral taxon
178 str. F0338]
Length = 156
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 5/134 (3%)
Query: 64 FSLGVDLGLSRTGLALS--KGFCVRPLTVLKLRGEKLELQ-LLEIAQREETDEFIIGLPK 120
+GVD+G R G+A + +G P+ L+ + +++ L I + + E ++GLP+
Sbjct: 1 MRIGVDVGTVRVGVARTDPEGILSIPVRTLRRADDWSDVEELATIVAQYDAIEVLVGLPR 60
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
G E + R A R V+ A G RV ++DE +S +A R+ G+ ++ +
Sbjct: 61 HLKGGEGVSAKGARRYARR--VKVACPGVRVAMVDERLSSTQAHQRLRARGVPETDHRGV 118
Query: 181 TDAYAAVILLERYF 194
D AA I++E
Sbjct: 119 IDQVAAQIIIEHAL 132
>gi|315127641|ref|YP_004069644.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp.
SM9913]
gi|315016155|gb|ADT69493.1| Holliday junction resolvase-like protein [Pseudoalteromonas sp.
SM9913]
Length = 149
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 35/135 (25%), Positives = 62/135 (45%), Gaps = 6/135 (4%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIA---QREETDEFIIGLPKSW 122
+G D G G+A+ + ++ ++ + +IA + + D ++GLP +
Sbjct: 15 MGFDFGTKSIGIAIGQELTGSATSLKAVKAQDGIPNWDDIAVQVKEWQPDLMVVGLPLNM 74
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+ + K + A RL G V+ DE T+A+A R+ G K+ + D
Sbjct: 75 DGTSQEVTFKAKKFANRLH---NHYGIAVHTQDERLTTADAKARLFERGGYKNLGKGNVD 131
Query: 183 AYAAVILLERYFSMS 197
+AVI+LE +F S
Sbjct: 132 NMSAVIILESFFEAS 146
>gi|424745533|ref|ZP_18173796.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-141]
gi|422942226|gb|EKU37287.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-141]
Length = 146
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G QLL+I + + D F++GLP +
Sbjct: 10 MAFDFGTQKMGMAIGQSSIESANPLPLFIMKDGIPNWDQLLKIVKEWQPDLFLVGLPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + ++DE T+ EA + + A++ D
Sbjct: 70 DDSESELSTRARKFARRL---RHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLSAD 126
Query: 183 AYAAVILLERYF 194
++AA +L++ ++
Sbjct: 127 SFAAALLIQSWY 138
>gi|417841807|ref|ZP_12487907.1| Putative Holliday junction resolvase [Haemophilus haemolyticus
M19501]
gi|341948576|gb|EGT75201.1| Putative Holliday junction resolvase [Haemophilus haemolyticus
M19501]
Length = 141
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/134 (28%), Positives = 64/134 (47%), Gaps = 11/134 (8%)
Query: 65 SLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSWD 123
S+G +G S TG A + L K + +E +E + D ++GLP + D
Sbjct: 14 SIGCAVGQSITGTA-------QALPAFKAQDGIPNWDAIEKCLKEWKPDVVVVGLPLNMD 66
Query: 124 GSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTDA 183
G+E + + R A RL R G V L DE T+ EA + + G ++ ++ K D
Sbjct: 67 GTEQDLTLRARKFANRLQGRF---GVNVQLQDERLTTTEARSEIFDRGGFRALKKGKVDG 123
Query: 184 YAAVILLERYFSMS 197
+A ++LE +F ++
Sbjct: 124 ISACLILENWFEVA 137
>gi|377563166|ref|ZP_09792517.1| putative Holliday junction resolvase [Gordonia sputi NBRC 100414]
gi|377529414|dbj|GAB37682.1| putative Holliday junction resolvase [Gordonia sputi NBRC 100414]
Length = 142
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/135 (30%), Positives = 62/135 (45%), Gaps = 5/135 (3%)
Query: 63 GFSLGVDLGLSRTGLALSK--GFCVRPL-TVLKLRGEKLELQLLEIAQREETDEFIIGLP 119
G LGVD+G R G+A+S G P+ TV + +L + + + E I+GLP
Sbjct: 6 GRRLGVDVGSVRIGVAVSDPDGILATPVETVAGADVDAAVARLRALVEEYDAVEVIVGLP 65
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
K+ ++ P + K R+ RLA G V DE T+ A + G S A +
Sbjct: 66 KTLRNTDGPAAEKARAFGARLA--EGLEGISVVFSDERLTTVAAQQALHASGRSVKASRG 123
Query: 180 KTDAYAAVILLERYF 194
D AAV +L+ +
Sbjct: 124 VIDQAAAVAILQGWL 138
>gi|417959280|ref|ZP_12602120.1| Putative Holliday junction resolvase [Candidatus Arthromitus sp.
SFB-1]
gi|417961340|ref|ZP_12603783.1| Putative Holliday junction resolvase [Candidatus Arthromitus sp.
SFB-2]
gi|417965729|ref|ZP_12607215.1| Putative Holliday junction resolvase [Candidatus Arthromitus sp.
SFB-4]
gi|417967788|ref|ZP_12608852.1| Putative Holliday junction resolvase [Candidatus Arthromitus sp.
SFB-co]
gi|418372765|ref|ZP_12964857.1| Putative Holliday junction resolvase [Candidatus Arthromitus sp.
SFB-mouse-SU]
gi|380333661|gb|EIA24199.1| Putative Holliday junction resolvase [Candidatus Arthromitus sp.
SFB-2]
gi|380333749|gb|EIA24274.1| Putative Holliday junction resolvase [Candidatus Arthromitus sp.
SFB-1]
gi|380335923|gb|EIA26008.1| Putative Holliday junction resolvase [Candidatus Arthromitus sp.
SFB-4]
gi|380340770|gb|EIA29324.1| Putative Holliday junction resolvase [Candidatus Arthromitus sp.
SFB-co]
gi|380342434|gb|EIA30879.1| Putative Holliday junction resolvase [Candidatus Arthromitus sp.
SFB-mouse-SU]
Length = 137
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/93 (27%), Positives = 48/93 (51%), Gaps = 1/93 (1%)
Query: 104 EIAQREETDEFIIGLPKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEA 163
+I + + + ++GLPK+ +GS Q KV L + + G ++ +DE T+ A
Sbjct: 43 KIIKDNKVSKLVVGLPKNMNGSIGFQGEKVIKFCEDLE-KILDEGIKIEFMDERLTTVLA 101
Query: 164 VDRMINMGLSKSARQTKTDAYAAVILLERYFSM 196
+ M+ +S+ R+ D AA I+L+ Y +M
Sbjct: 102 NNFMLEADMSRKKRKNIVDKMAAQIILQDYLNM 134
>gi|310287354|ref|YP_003938612.1| resolvase [Bifidobacterium bifidum S17]
gi|309251290|gb|ADO53038.1| resolvase [Bifidobacterium bifidum S17]
Length = 156
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 39/140 (27%), Positives = 63/140 (45%), Gaps = 14/140 (10%)
Query: 66 LGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLEL--QLLEIAQREETDEFIIGLPKS 121
LGVDLG +R GLALS P ++ G+ ++ + + E D ++GLP
Sbjct: 8 LGVDLGDARVGLALSDPELTFAHPYGNIQAYGDSFRALDDVITVIEDEAVDHIVVGLPLQ 67
Query: 122 WDGSETPQSNKVRSVAGRLAVR----AAERGWRVY------LLDEHRTSAEAVDRMINMG 171
DG+E + K R + L R E + +Y LLDE T+ A +++
Sbjct: 68 LDGTEGKSAKKARRWSANLEKRMRNLMDEHDFALYHIPQVTLLDERLTTVSAHRQLLEAQ 127
Query: 172 LSKSARQTKTDAYAAVILLE 191
L + D +AV++L+
Sbjct: 128 LGSRRHRPVVDQQSAVVILQ 147
>gi|336451171|ref|ZP_08621616.1| hypothetical protein A28LD_1279 [Idiomarina sp. A28L]
gi|336282016|gb|EGN75262.1| hypothetical protein A28LD_1279 [Idiomarina sp. A28L]
Length = 136
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 38/132 (28%), Positives = 59/132 (44%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQREETDEF-IIGLPKSW 122
L D G G+A+ PL L + QLLE +E +F ++GLP +
Sbjct: 4 LAFDFGTKSIGVAVGSRITSTASPLAALAAKEGIPNWQLLEKLIKEWQPDFCVVGLPLNM 63
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E P ++ R RL R G +V DE T+A + + G + + + D
Sbjct: 64 DGTEQPLTDLARKFGNRLHGRF---GVQVKYQDERLTTASVREELFARGGFRELSKGRVD 120
Query: 183 AYAAVILLERYF 194
+ AA +LE +F
Sbjct: 121 SAAACTILEDFF 132
>gi|333929058|ref|YP_004502637.1| Holliday junction resolvase [Serratia sp. AS12]
gi|333934011|ref|YP_004507589.1| Holliday junction resolvase [Serratia plymuthica AS9]
gi|386330881|ref|YP_006027051.1| Holliday junction resolvase [Serratia sp. AS13]
gi|333475618|gb|AEF47328.1| Holliday junction resolvase [Serratia plymuthica AS9]
gi|333493118|gb|AEF52280.1| Holliday junction resolvase [Serratia sp. AS12]
gi|333963214|gb|AEG29987.1| Holliday junction resolvase [Serratia sp. AS13]
Length = 140
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 36/132 (27%), Positives = 64/132 (48%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKSW 122
+ D G G A+ + R L K + + Q +E +E + D ++GLP +
Sbjct: 7 IAFDFGTKSIGAAIGQELTGSARALAAFKAQDGSPDWQKIEKLLKEWQPDLVVVGLPLNM 66
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
DG+E +++ R A RL R G +V L DE ++ EA + + G ++ + D
Sbjct: 67 DGTEQLVTDQARKFANRLHGRF---GVQVALHDERLSTVEARANLFDRGGFRALDKGSVD 123
Query: 183 AYAAVILLERYF 194
+ +AV++LE +F
Sbjct: 124 SASAVVILESWF 135
>gi|145220493|ref|YP_001131202.1| Holliday junction resolvase YqgF [Chlorobium phaeovibrioides DSM
265]
gi|145206657|gb|ABP37700.1| Holliday junction resolvase YqgF [Chlorobium phaeovibrioides DSM
265]
Length = 142
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 41/136 (30%), Positives = 62/136 (45%), Gaps = 8/136 (5%)
Query: 66 LGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGLPKSWDGS 125
+G+D G R GLA++ + V E L+ L EI +++ ++G P S G
Sbjct: 7 VGIDYGTKRIGLAVADPLRIFARPVGTFSREGLQGALEEIERQDGIATLVVGYPLSSGG- 65
Query: 126 ETPQSNKVRSVAGRLAVRAAERGWRVYL--LDEHRTSAEAVDRMINMGLSKSARQTKT-- 181
++N + V R E V + +DE+ +S EAV + G S+ RQ K
Sbjct: 66 ---ETNAMTGVIDRFITELGEAFPDVAIERVDEYHSSREAVHILAAAGGSRKDRQKKGRL 122
Query: 182 DAYAAVILLERYFSMS 197
D AA +LL RY S
Sbjct: 123 DTAAACVLLTRYLEES 138
>gi|389783955|ref|ZP_10195190.1| Holliday junction resolvase-like protein [Rhodanobacter
spathiphylli B39]
gi|388434159|gb|EIL91112.1| Holliday junction resolvase-like protein [Rhodanobacter
spathiphylli B39]
Length = 149
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 44/139 (31%), Positives = 68/139 (48%), Gaps = 9/139 (6%)
Query: 65 SLGVDLGLSRTGLALSKGFCV--RPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPKS 121
+ G D+G TG+A+ F R L L + + + L+ +RE + D ++GLP +
Sbjct: 4 AFGFDVGSKITGVAIGNSFTASARALATLAVHDDTPDWNRLDTLRREWQPDTLVVGLPLT 63
Query: 122 WDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMIN---MGLSKSARQ 178
+G+E P S + R A L R G V L+DE +S EA R +GL +
Sbjct: 64 LEGAEQPASRRARRFAALLQER---YGLPVVLVDERHSSQEAAQRFAGARALGLKRRRDA 120
Query: 179 TKTDAYAAVILLERYFSMS 197
DA AA ++LER+ M+
Sbjct: 121 AAIDAEAAAVVLERWLGMA 139
>gi|262280744|ref|ZP_06058527.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|375136847|ref|YP_004997497.1| putative Holliday junction resolvase [Acinetobacter calcoaceticus
PHEA-2]
gi|427423125|ref|ZP_18913291.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-136]
gi|262257644|gb|EEY76379.1| conserved hypothetical protein [Acinetobacter calcoaceticus
RUH2202]
gi|325124292|gb|ADY83815.1| putative Holliday junction resolvase [Acinetobacter calcoaceticus
PHEA-2]
gi|425700225|gb|EKU69816.1| RNAse H domain protein, YqgF family [Acinetobacter baumannii
WC-136]
Length = 146
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 34/132 (25%), Positives = 65/132 (49%), Gaps = 6/132 (4%)
Query: 66 LGVDLGLSRTGLALSKGFC--VRPLTVLKLR-GEKLELQLLEIAQREETDEFIIGLPKSW 122
+ D G + G+A+ + PL + ++ G QLL+I + + D F++GLP +
Sbjct: 10 MAFDFGTQKMGMAIGQSSIESANPLPLFVMKDGIPNWDQLLKIVKEWQPDLFLVGLPLNM 69
Query: 123 DGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTKTD 182
D SE+ S + R A RL + ++DE T+ EA + + A++ D
Sbjct: 70 DDSESELSTRARKFARRL---RHQTNIETLMVDERLTTREAREELGFYQEQGRAKKLSAD 126
Query: 183 AYAAVILLERYF 194
++AA +L++ ++
Sbjct: 127 SFAAALLIQSWY 138
>gi|183596313|ref|ZP_02958341.1| hypothetical protein PROSTU_00048 [Providencia stuartii ATCC 25827]
gi|386742594|ref|YP_006215773.1| Holliday junction resolvase-like protein [Providencia stuartii MRSN
2154]
gi|188023917|gb|EDU61957.1| RNAse H domain protein, YqgF family [Providencia stuartii ATCC
25827]
gi|384479287|gb|AFH93082.1| Holliday junction resolvase-like protein [Providencia stuartii MRSN
2154]
Length = 139
Score = 47.0 bits (110), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 40/134 (29%), Positives = 67/134 (50%), Gaps = 11/134 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFII-GLPK 120
G S+GV +G TG A R L LK + + Q +E +E + +I GLP
Sbjct: 12 GTKSIGVAVGQEITGTA-------RSLASLKANDGRPDWQQIEKLLKEWQPQLVIVGLPL 64
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E +++ R+ A R+ R G +V L DE ++ A + G ++ + K
Sbjct: 65 NMDGTEQLVTSQARNFANRIHGRF---GVKVELHDERLSTVAAKAELFERGGYRALSKGK 121
Query: 181 TDAYAAVILLERYF 194
D+ +AV++LE +F
Sbjct: 122 VDSASAVVILESWF 135
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.319 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,497,174,663
Number of Sequences: 23463169
Number of extensions: 137417476
Number of successful extensions: 314569
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 2494
Number of HSP's that attempted gapping in prelim test: 312841
Number of HSP's gapped (non-prelim): 2596
length of query: 231
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 93
effective length of database: 9,121,278,045
effective search space: 848278858185
effective search space used: 848278858185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 74 (33.1 bits)