BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026881
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1OVQ|A Chain A, Solution Structure Of The Hypothetical Protein Yqgf From
Escherichia Coli
Length = 138
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>pdb|1NMN|A Chain A, Structure Of Yqgf From Escherichia Coli, A Hypothetical
Protein
pdb|1NMN|B Chain B, Structure Of Yqgf From Escherichia Coli, A Hypothetical
Protein
Length = 138
Score = 62.0 bits (149), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 43/135 (31%), Positives = 68/135 (50%), Gaps = 6/135 (4%)
Query: 63 GFSLGVDLGLSRTGLALSKGFC--VRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLP 119
G L D G G+A+ + RPL +K + + ++E +E + DE I+GLP
Sbjct: 3 GTLLAFDFGTKSIGVAVGQRITGTARPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLP 62
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQT 179
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ +
Sbjct: 63 LNMDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKG 119
Query: 180 KTDAYAAVILLERYF 194
K D+ +AVI+LE YF
Sbjct: 120 KVDSASAVIILESYF 134
>pdb|1NU0|A Chain A, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of
Yqgf From Escherichia Coli, A Hypothetical Protein
pdb|1NU0|B Chain B, Structure Of The Double Mutant (L6m; F134m, Semet Form) Of
Yqgf From Escherichia Coli, A Hypothetical Protein
Length = 138
Score = 58.9 bits (141), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/133 (33%), Positives = 68/133 (51%), Gaps = 11/133 (8%)
Query: 62 GGFSLGVDLGLSRTGLALSKGFCVRPLTVLKLRGEKLELQLLEIAQRE-ETDEFIIGLPK 120
G S+GV +G TG A RPL +K + + ++E +E + DE I+GLP
Sbjct: 11 GTKSIGVAVGQRITGTA-------RPLPAIKAQDGTPDWNIIERLLKEWQPDEIIVGLPL 63
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ DG+E P + + R A R+ R G V L DE ++ EA + G ++ + K
Sbjct: 64 NXDGTEQPLTARARKFANRIHGRF---GVEVKLHDERLSTVEARSGLFEQGGYRALNKGK 120
Query: 181 TDAYAAVILLERY 193
D+ +AVI+LE Y
Sbjct: 121 VDSASAVIILESY 133
>pdb|1VHX|A Chain A, Crystal Structure Of Putative Holliday Junction Resolvase
pdb|1VHX|B Chain B, Crystal Structure Of Putative Holliday Junction Resolvase
Length = 150
Score = 45.4 bits (106), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 38/140 (27%), Positives = 66/140 (47%), Gaps = 8/140 (5%)
Query: 66 LGVDLGLSRTGLALSK--GFCVRPLTVLKL---RGEKLELQLLEIAQREETDEFIIGLPK 120
LG+DLG G+ALS G+ + + +K+ G+ +L E+ + D+ ++G PK
Sbjct: 6 LGLDLGTKTLGVALSDEXGWTAQGIETIKINEAEGDYGLSRLSELIKDYTIDKIVLGFPK 65
Query: 121 SWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSARQTK 180
+ +G+ P+ ++ A V V L DE T+ A +I +S+ R+
Sbjct: 66 NXNGTVGPRGEASQTFA---KVLETTYNVPVVLWDERLTTXAAEKXLIAADVSRQKRKKV 122
Query: 181 TDAYAAVILLERYFSMSGQG 200
D AAV +L+ Y +G
Sbjct: 123 IDKXAAVXILQGYLDSLNEG 142
>pdb|1IV0|A Chain A, Solution Structure Of The Yqgf-Family Protein (N-Terminal
Fragment)
Length = 98
Score = 33.1 bits (74), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 34/102 (33%), Positives = 51/102 (50%), Gaps = 19/102 (18%)
Query: 68 VDLGLSRTGLALS---------KGFCVRPLTVLKLRGEKLELQLLEIAQREETDEFIIGL 118
+D+G +R GLA+ +G+ VR K E +E LL+ +RE + ++GL
Sbjct: 6 LDVGEARIGLAVGEEGVPLASGRGYLVR-----KTLEEDVE-ALLDFVRREGLGKLVVGL 59
Query: 119 PKSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTS 160
P D E+ Q+ KV + A+RA RG V L DE T+
Sbjct: 60 PLRTDLKESAQAGKVLPLVE--ALRA--RGVEVELWDERFTT 97
>pdb|1M53|A Chain A, Crystal Structure Of Isomaltulose Synthase (Pali) From
Klebsiella Sp. Lx3
Length = 570
Score = 27.7 bits (60), Expect = 5.7, Method: Compositional matrix adjust.
Identities = 22/85 (25%), Positives = 36/85 (42%), Gaps = 11/85 (12%)
Query: 120 KSWDGSETPQSNKVRSVAGRLAVRAAERGWRVYLLDEHRTSAEAVDRMINMGLSKSA-RQ 178
KSW S+ R + ++ V + GW + LD H + AV + G + R+
Sbjct: 309 KSWSLSQ------FRQIISKMDVTVGKYGWNTFFLDNH-DNPRAVS---HFGDDRPQWRE 358
Query: 179 TKTDAYAAVILLERYFSMSGQGTEI 203
A A + L +R QG+E+
Sbjct: 359 ASAKALATITLTQRATPFIYQGSEL 383
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.395
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,461,451
Number of Sequences: 62578
Number of extensions: 248945
Number of successful extensions: 469
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 459
Number of HSP's gapped (non-prelim): 11
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)