BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026884
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LKM|B Chain B, Structural Basis For Molecular Interactions Involving Mrg
Domains: Implications In Chromatin Biology
Length = 172
Score = 120 bits (300), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 65/153 (42%), Positives = 96/153 (62%), Gaps = 8/153 (5%)
Query: 66 VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD----S 121
VK++IP LK LVDDW+ + +Q +L LP NVD IL Y YR + TD +
Sbjct: 5 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYRKSRGN--TDNKEYA 62
Query: 122 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV-SP-STIYGAEHLLRLFVKLPEL 179
+ E++ GI+ YF+ L LLYK ER QY +++ D+ +P S +YGA HLLRLFV++ +
Sbjct: 63 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 122
Query: 180 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFF 212
LAY +++++L L + DFLK++ KN +T F
Sbjct: 123 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF 155
>pdb|2AQL|A Chain A, Crystal Structure Of The Mrg15 Mrg Domain
pdb|2AQL|B Chain B, Crystal Structure Of The Mrg15 Mrg Domain
Length = 173
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 96/153 (62%), Gaps = 8/153 (5%)
Query: 66 VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD----S 121
VK++IP LK LVDDW+ + +Q +L LP NVD IL Y Y+ + TD +
Sbjct: 6 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEYA 63
Query: 122 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV-SP-STIYGAEHLLRLFVKLPEL 179
+ E++ GI+ YF+ L LLYK ER QY +++ D+ +P S +YGA HLLRLFV++ +
Sbjct: 64 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 123
Query: 180 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFF 212
LAY +++++L L + DFLK++ KN +T F
Sbjct: 124 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF 156
>pdb|2F5J|A Chain A, Crystal Structure Of Mrg Domain From Human Mrg15
pdb|2F5J|B Chain B, Crystal Structure Of Mrg Domain From Human Mrg15
Length = 181
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 64/153 (41%), Positives = 96/153 (62%), Gaps = 8/153 (5%)
Query: 66 VKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQYRSKKDGMMTD----S 121
VK++IP LK LVDDW+ + +Q +L LP NVD IL Y Y+ + TD +
Sbjct: 6 VKVKIPEELKPWLVDDWDLITRQKQLFYLPAKKNVDSILEDYANYKKSRGN--TDNKEYA 63
Query: 122 IGEILKGIRCYFDKALPVMLLYKKERQQYHDLVVDNV-SP-STIYGAEHLLRLFVKLPEL 179
+ E++ GI+ YF+ L LLYK ER QY +++ D+ +P S +YGA HLLRLFV++ +
Sbjct: 64 VNEVVAGIKEYFNVMLGTQLLYKFERPQYAEILADHPDAPMSQVYGAPHLLRLFVRIGAM 123
Query: 180 LAYVNIEDETLIRLQQKMIDFLKFMQKNQSTFF 212
LAY +++++L L + DFLK++ KN +T F
Sbjct: 124 LAYTPLDEKSLALLLNYLHDFLKYLAKNSATLF 156
>pdb|2Y0N|A Chain A, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|B Chain B, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|C Chain C, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
pdb|2Y0N|D Chain D, Crystal Structure Of The Complex Between Dosage
Compensation Factors Msl1 And Msl3
Length = 211
Score = 97.1 bits (240), Expect = 7e-21, Method: Compositional matrix adjust.
Identities = 66/196 (33%), Positives = 99/196 (50%), Gaps = 39/196 (19%)
Query: 63 EKLVKIQIPSTLKKQLVDDWEFVNQQDKLVKLPRLPNVDDILTKYLQY-----------R 111
E+ + I+IP LKKQL DD ++N++ +LVKLP N+ IL Y+++ R
Sbjct: 5 ERTITIEIPEVLKKQLEDDCYYINRRKRLVKLPCQTNIITILESYVKHFAINAAFSANER 64
Query: 112 SKKDGMM---------------TDSIGEILKGIRCYFDKALPVMLLYKKERQQY------ 150
+ +M D E++ G+R FD LP++LLY E+ QY
Sbjct: 65 PRHHHVMPHANMNVHYIPAEKNVDLCKEMVDGLRITFDYTLPLVLLYPYEQAQYKKVTSS 124
Query: 151 -HDLVVDN-----VSPSTIYGAEHLLRLFVKLPELLAYVNIEDETLIRLQQKMIDFLKFM 204
+D+ PS IYGA+HLLRLFVKLPE+L ++ ++ L L + FL+F+
Sbjct: 125 KYDIPPTTEFDQPPPPSYIYGAQHLLRLFVKLPEILGKMSFSEKNLKALLKHFDLFLRFL 184
Query: 205 QKNQSTFFL-SAYDGS 219
+ FF SAY +
Sbjct: 185 AEYHDDFFPESAYVAA 200
>pdb|1A3G|A Chain A, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|B Chain B, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
pdb|1A3G|C Chain C, Branched-chain Amino Acid Aminotransferase From
Escherichia Coli
Length = 308
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 125 ILKGIRCYFDKALPVMLLYKKERQQYHD 152
+ +GIRCY PV+ +++ Q+ HD
Sbjct: 35 VFEGIRCYDSHKGPVVFRHREHMQRLHD 62
>pdb|1I1K|A Chain A, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|B Chain B, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1K|C Chain C, Crystal Structure Of Eschelichia Coli Branched-chain Amino
Acid Aminotransferase.
pdb|1I1L|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1L|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|A Chain A, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|B Chain B, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1I1M|C Chain C, Crystal Structure Of Escherichia Coli Branched-Chain Amino
Acid Aminotransferase.
pdb|1IYD|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYD|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|A Chain A, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|B Chain B, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
pdb|1IYE|C Chain C, Crystal Structure Of Eschelichia Coli Branched-Chain Amino
Acid Aminotransferase
Length = 309
Score = 29.3 bits (64), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 10/28 (35%), Positives = 17/28 (60%)
Query: 125 ILKGIRCYFDKALPVMLLYKKERQQYHD 152
+ +GIRCY PV+ +++ Q+ HD
Sbjct: 36 VFEGIRCYDSHKGPVVFRHREHMQRLHD 63
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.314 0.132 0.357
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,457,119
Number of Sequences: 62578
Number of extensions: 265980
Number of successful extensions: 482
Number of sequences better than 100.0: 10
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 466
Number of HSP's gapped (non-prelim): 12
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 50 (23.9 bits)