Query 026885
Match_columns 231
No_of_seqs 176 out of 1355
Neff 8.2
Searched_HMMs 46136
Date Fri Mar 29 14:05:27 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026885.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026885hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02487 zeta-carotene desatur 100.0 2.1E-32 4.5E-37 254.4 20.0 230 1-230 249-478 (569)
2 TIGR02732 zeta_caro_desat caro 100.0 3.6E-29 7.8E-34 229.5 20.7 230 1-230 173-402 (474)
3 PLN02612 phytoene desaturase 99.9 2E-25 4.3E-30 208.7 21.1 207 1-230 262-468 (567)
4 TIGR02731 phytoene_desat phyto 99.9 1.1E-22 2.5E-27 185.4 20.5 206 1-230 167-377 (453)
5 TIGR03467 HpnE squalene-associ 99.8 3.2E-18 7E-23 153.4 19.6 196 1-230 150-346 (419)
6 PRK07208 hypothetical protein; 99.8 1.6E-16 3.4E-21 145.9 22.1 207 1-230 151-385 (479)
7 PRK07233 hypothetical protein; 99.8 1.2E-16 2.6E-21 144.1 20.2 201 1-230 150-356 (434)
8 COG3349 Uncharacterized conser 99.7 5.7E-17 1.2E-21 146.4 10.6 220 1-229 168-388 (485)
9 COG1232 HemY Protoporphyrinoge 99.6 7.1E-15 1.5E-19 132.9 16.3 198 1-230 153-372 (444)
10 PRK12416 protoporphyrinogen ox 99.6 1.1E-13 2.4E-18 126.6 18.1 199 1-230 164-387 (463)
11 PRK11883 protoporphyrinogen ox 99.5 3.4E-13 7.3E-18 122.5 17.7 200 1-230 159-379 (451)
12 TIGR02733 desat_CrtD C-3',4' d 99.5 5.1E-13 1.1E-17 123.2 18.3 197 11-229 200-406 (492)
13 TIGR00562 proto_IX_ox protopor 99.5 1.3E-12 2.9E-17 119.2 18.3 200 1-230 155-386 (462)
14 PLN02576 protoporphyrinogen ox 99.4 6.3E-12 1.4E-16 116.0 18.5 209 1-230 164-410 (496)
15 TIGR02730 carot_isom carotene 99.4 1.8E-11 3.9E-16 113.1 16.7 192 13-230 200-407 (493)
16 TIGR02734 crtI_fam phytoene de 99.3 1.3E-10 2.8E-15 107.5 19.4 197 12-229 190-404 (502)
17 PF01593 Amino_oxidase: Flavin 99.1 6.5E-11 1.4E-15 105.1 5.9 199 2-230 163-370 (450)
18 KOG4254 Phytoene desaturase [C 99.1 5.9E-09 1.3E-13 93.1 16.1 85 32-125 250-335 (561)
19 COG1233 Phytoene dehydrogenase 98.9 3.9E-08 8.4E-13 91.0 14.5 74 37-119 215-288 (487)
20 PRK13977 myosin-cross-reactive 98.7 1.7E-07 3.7E-12 87.3 10.9 102 7-109 182-290 (576)
21 PLN02529 lysine-specific histo 98.7 9.1E-07 2E-11 85.2 16.0 159 38-230 349-513 (738)
22 PLN03000 amine oxidase 98.7 5.7E-07 1.2E-11 87.5 14.4 153 39-230 374-537 (881)
23 PLN02328 lysine-specific histo 98.6 1.7E-06 3.7E-11 83.9 15.3 156 38-230 429-593 (808)
24 PLN02676 polyamine oxidase 98.6 8.1E-07 1.7E-11 82.2 11.9 161 42-230 220-392 (487)
25 PLN02268 probable polyamine ox 98.5 2.7E-06 5.9E-11 77.3 13.8 142 60-230 209-354 (435)
26 PLN02568 polyamine oxidase 98.5 2.3E-06 5.1E-11 80.1 12.8 95 41-149 237-339 (539)
27 COG2907 Predicted NAD/FAD-bind 98.4 2E-06 4.3E-11 75.1 8.8 130 1-144 170-303 (447)
28 PLN02976 amine oxidase 98.3 8.2E-06 1.8E-10 82.6 13.9 162 40-230 930-1103(1713)
29 COG1231 Monoamine oxidase [Ami 98.3 1.9E-05 4.1E-10 71.2 13.7 157 43-230 206-365 (450)
30 KOG0029 Amine oxidase [Seconda 98.3 1.2E-05 2.7E-10 74.5 12.8 191 2-230 178-376 (501)
31 PTZ00363 rab-GDP dissociation 98.1 2.3E-05 4.9E-10 71.8 11.1 66 37-110 223-288 (443)
32 KOG1276 Protoporphyrinogen oxi 97.9 0.00011 2.3E-09 66.0 10.4 138 2-148 175-343 (491)
33 PF06100 Strep_67kDa_ant: Stre 97.7 0.00052 1.1E-08 62.9 11.7 104 5-109 161-271 (500)
34 PF01266 DAO: FAD dependent ox 97.5 0.00028 6.1E-09 61.3 6.8 57 47-112 147-203 (358)
35 KOG0685 Flavin-containing amin 97.4 0.0013 2.9E-08 59.7 10.1 79 62-150 244-327 (498)
36 COG2509 Uncharacterized FAD-de 97.4 0.00053 1.1E-08 62.1 7.0 55 48-110 174-228 (486)
37 COG2081 Predicted flavoprotein 97.3 0.00069 1.5E-08 60.5 7.0 62 39-109 103-164 (408)
38 PF03486 HI0933_like: HI0933-l 97.2 0.0009 2E-08 60.7 6.8 65 38-110 100-164 (409)
39 TIGR02352 thiamin_ThiO glycine 97.1 0.0023 4.9E-08 55.6 7.9 56 48-112 138-193 (337)
40 TIGR03378 glycerol3P_GlpB glyc 97.1 0.0039 8.5E-08 56.6 9.5 63 47-117 263-327 (419)
41 COG3380 Predicted NAD/FAD-depe 97.0 0.001 2.2E-08 56.7 4.9 92 50-150 107-200 (331)
42 PF00890 FAD_binding_2: FAD bi 96.9 0.0046 9.9E-08 55.8 8.3 58 47-109 141-200 (417)
43 PRK00711 D-amino acid dehydrog 96.7 0.0068 1.5E-07 54.5 8.1 55 48-111 202-256 (416)
44 PF00996 GDI: GDP dissociation 96.6 0.019 4.1E-07 52.5 10.3 81 18-107 201-284 (438)
45 COG0579 Predicted dehydrogenas 96.6 0.0084 1.8E-07 54.6 7.8 63 48-118 154-219 (429)
46 PRK06134 putative FAD-binding 96.5 0.012 2.7E-07 55.8 8.3 57 48-110 218-276 (581)
47 TIGR03377 glycerol3P_GlpA glyc 96.4 0.016 3.4E-07 54.1 8.7 59 48-111 129-189 (516)
48 PRK07121 hypothetical protein; 96.4 0.015 3.2E-07 54.0 8.3 60 47-110 177-237 (492)
49 TIGR02485 CobZ_N-term precorri 96.4 0.015 3.3E-07 52.9 8.1 57 48-109 124-180 (432)
50 TIGR03862 flavo_PP4765 unchara 96.3 0.014 3E-07 52.5 7.5 62 39-110 78-139 (376)
51 PRK11101 glpA sn-glycerol-3-ph 96.3 0.02 4.4E-07 53.9 8.9 59 48-111 150-210 (546)
52 PRK12835 3-ketosteroid-delta-1 96.3 0.015 3.3E-07 55.2 8.0 57 47-109 213-272 (584)
53 PRK08274 tricarballylate dehyd 96.3 0.017 3.8E-07 53.0 8.1 58 47-109 131-189 (466)
54 PRK12844 3-ketosteroid-delta-1 96.3 0.015 3.3E-07 54.8 7.8 57 46-109 207-266 (557)
55 PRK12843 putative FAD-binding 96.3 0.017 3.7E-07 54.8 8.1 57 47-110 221-280 (578)
56 PRK07843 3-ketosteroid-delta-1 96.1 0.023 5.1E-07 53.6 8.1 59 46-109 207-266 (557)
57 PRK12845 3-ketosteroid-delta-1 96.1 0.026 5.6E-07 53.4 8.2 56 47-109 217-275 (564)
58 PRK06481 fumarate reductase fl 96.1 0.026 5.7E-07 52.6 8.0 56 48-109 191-248 (506)
59 PRK06175 L-aspartate oxidase; 96.0 0.041 9E-07 50.3 9.1 58 46-110 127-187 (433)
60 PRK12842 putative succinate de 96.0 0.027 6E-07 53.3 8.2 57 47-109 214-272 (574)
61 TIGR01813 flavo_cyto_c flavocy 96.0 0.029 6.3E-07 51.1 8.1 58 48-110 131-190 (439)
62 TIGR01816 sdhA_forward succina 96.0 0.042 9.1E-07 52.0 9.2 60 46-110 118-179 (565)
63 PRK07573 sdhA succinate dehydr 95.9 0.037 8E-07 53.2 8.5 55 51-110 174-230 (640)
64 PRK06847 hypothetical protein; 95.9 0.47 1E-05 41.9 15.0 63 48-119 108-172 (375)
65 TIGR03197 MnmC_Cterm tRNA U-34 95.8 0.019 4E-07 51.3 5.8 55 48-112 136-190 (381)
66 PF13738 Pyr_redox_3: Pyridine 95.8 0.02 4.4E-07 46.0 5.6 55 47-110 82-136 (203)
67 PRK09078 sdhA succinate dehydr 95.8 0.052 1.1E-06 51.7 9.0 60 47-110 149-210 (598)
68 TIGR00275 flavoprotein, HI0933 95.8 0.048 1E-06 49.3 8.2 61 41-111 99-159 (400)
69 PRK05329 anaerobic glycerol-3- 95.7 0.048 1E-06 49.8 8.1 62 48-117 260-323 (422)
70 PTZ00383 malate:quinone oxidor 95.7 0.046 1E-06 50.9 8.1 56 48-112 212-273 (497)
71 TIGR01812 sdhA_frdA_Gneg succi 95.7 0.059 1.3E-06 50.9 8.9 58 48-110 130-189 (566)
72 TIGR01320 mal_quin_oxido malat 95.6 0.063 1.4E-06 49.9 8.5 60 48-112 179-240 (483)
73 PRK11728 hydroxyglutarate oxid 95.6 0.053 1.2E-06 48.6 7.8 62 47-118 149-212 (393)
74 PRK05675 sdhA succinate dehydr 95.6 0.077 1.7E-06 50.3 9.1 61 46-110 125-187 (570)
75 TIGR01811 sdhA_Bsu succinate d 95.5 0.082 1.8E-06 50.5 9.1 60 46-109 128-193 (603)
76 PRK12839 hypothetical protein; 95.5 0.071 1.5E-06 50.6 8.5 58 47-109 214-273 (572)
77 COG1252 Ndh NADH dehydrogenase 95.5 0.037 8E-07 50.1 6.3 59 45-116 207-269 (405)
78 PRK06452 sdhA succinate dehydr 95.5 0.079 1.7E-06 50.2 8.9 59 47-110 136-196 (566)
79 KOG1336 Monodehydroascorbate/f 95.4 0.038 8.2E-07 50.5 6.0 67 45-118 253-319 (478)
80 PRK05945 sdhA succinate dehydr 95.3 0.098 2.1E-06 49.6 8.9 60 46-110 134-195 (575)
81 PF00732 GMC_oxred_N: GMC oxid 95.3 0.065 1.4E-06 45.9 7.1 62 53-117 199-263 (296)
82 PF00070 Pyr_redox: Pyridine n 95.3 0.066 1.4E-06 36.7 5.8 41 45-91 38-78 (80)
83 TIGR03329 Phn_aa_oxid putative 95.3 0.067 1.4E-06 49.2 7.4 53 48-111 184-236 (460)
84 TIGR01373 soxB sarcosine oxida 95.2 0.094 2E-06 47.1 8.3 62 48-117 184-247 (407)
85 PLN02464 glycerol-3-phosphate 95.2 0.097 2.1E-06 50.2 8.7 66 48-117 233-303 (627)
86 TIGR01377 soxA_mon sarcosine o 95.2 0.079 1.7E-06 46.9 7.6 54 48-111 146-199 (380)
87 PRK07057 sdhA succinate dehydr 95.2 0.13 2.7E-06 49.1 9.4 60 47-110 148-209 (591)
88 PRK12837 3-ketosteroid-delta-1 95.2 0.088 1.9E-06 49.2 8.2 57 48-109 174-232 (513)
89 COG0654 UbiH 2-polyprenyl-6-me 95.0 0.38 8.2E-06 43.1 11.5 63 48-118 105-169 (387)
90 PRK06263 sdhA succinate dehydr 95.0 0.11 2.4E-06 48.9 8.3 60 47-110 134-195 (543)
91 PRK08275 putative oxidoreducta 95.0 0.12 2.5E-06 48.8 8.4 60 47-110 137-198 (554)
92 PRK08958 sdhA succinate dehydr 95.0 0.15 3.3E-06 48.5 9.1 61 46-110 142-204 (588)
93 PRK04176 ribulose-1,5-biphosph 94.9 0.12 2.5E-06 44.0 7.3 61 47-111 104-172 (257)
94 PRK08205 sdhA succinate dehydr 94.8 0.14 3E-06 48.7 8.5 62 47-110 140-204 (583)
95 PRK05257 malate:quinone oxidor 94.8 0.13 2.9E-06 47.9 8.2 60 48-112 184-246 (494)
96 PRK04965 NADH:flavorubredoxin 94.8 0.12 2.6E-06 46.1 7.6 54 48-110 184-237 (377)
97 PRK09564 coenzyme A disulfide 94.8 0.12 2.5E-06 47.1 7.7 55 46-110 190-244 (444)
98 TIGR02374 nitri_red_nirB nitri 94.8 0.092 2E-06 51.7 7.4 55 48-111 183-237 (785)
99 PTZ00139 Succinate dehydrogena 94.7 0.17 3.7E-06 48.4 8.9 59 47-109 166-226 (617)
100 PTZ00318 NADH dehydrogenase-li 94.7 0.089 1.9E-06 47.8 6.7 53 45-110 226-278 (424)
101 PRK10157 putative oxidoreducta 94.7 0.13 2.7E-06 47.0 7.5 56 48-112 109-164 (428)
102 PRK06116 glutathione reductase 94.6 0.13 2.8E-06 47.0 7.5 56 47-110 208-263 (450)
103 PLN00128 Succinate dehydrogena 94.6 0.18 3.9E-06 48.5 8.7 60 47-110 187-248 (635)
104 PRK07512 L-aspartate oxidase; 94.6 0.11 2.3E-06 48.6 7.0 57 47-110 136-195 (513)
105 PRK14989 nitrite reductase sub 94.6 0.13 2.8E-06 51.0 7.8 57 48-111 188-244 (847)
106 PRK10015 oxidoreductase; Provi 94.5 0.21 4.5E-06 45.6 8.4 56 48-112 109-164 (429)
107 TIGR00551 nadB L-aspartate oxi 94.4 0.17 3.7E-06 47.0 7.8 60 47-111 128-188 (488)
108 PRK08626 fumarate reductase fl 94.3 0.24 5.1E-06 47.9 8.9 58 48-110 159-218 (657)
109 PRK08401 L-aspartate oxidase; 94.3 0.2 4.4E-06 46.2 8.1 56 46-111 119-174 (466)
110 PRK12409 D-amino acid dehydrog 94.3 0.21 4.5E-06 45.0 8.0 59 48-112 198-258 (410)
111 PRK07333 2-octaprenyl-6-methox 94.2 0.19 4.2E-06 44.8 7.6 61 48-117 112-173 (403)
112 PRK08773 2-octaprenyl-3-methyl 94.2 0.19 4E-06 45.0 7.4 61 48-117 114-175 (392)
113 PRK07395 L-aspartate oxidase; 94.1 0.23 5E-06 46.9 8.2 60 46-110 133-195 (553)
114 PRK06854 adenylylsulfate reduc 94.1 0.24 5.3E-06 47.3 8.4 58 48-110 133-193 (608)
115 PRK12834 putative FAD-binding 94.0 0.22 4.9E-06 46.9 7.9 57 48-109 149-224 (549)
116 TIGR01423 trypano_reduc trypan 94.0 0.2 4.4E-06 46.6 7.4 56 47-110 231-286 (486)
117 PRK07804 L-aspartate oxidase; 94.0 0.23 5E-06 46.8 7.9 60 47-110 144-208 (541)
118 PRK11259 solA N-methyltryptoph 94.0 0.21 4.6E-06 44.1 7.4 54 48-111 150-203 (376)
119 TIGR00292 thiazole biosynthesi 93.8 0.31 6.8E-06 41.3 7.8 67 48-117 101-176 (254)
120 PLN02507 glutathione reductase 93.8 0.24 5.2E-06 46.2 7.6 56 46-110 243-298 (499)
121 TIGR01350 lipoamide_DH dihydro 93.8 0.29 6.2E-06 44.8 8.0 55 47-110 211-267 (461)
122 PRK06416 dihydrolipoamide dehy 93.8 0.26 5.7E-06 45.2 7.7 56 47-111 213-271 (462)
123 PRK09754 phenylpropionate diox 93.8 0.23 5.1E-06 44.6 7.2 53 48-110 187-239 (396)
124 PRK05249 soluble pyridine nucl 93.7 0.23 4.9E-06 45.5 7.2 56 47-111 216-271 (461)
125 TIGR03385 CoA_CoA_reduc CoA-di 93.7 0.22 4.8E-06 45.1 7.1 53 48-111 180-232 (427)
126 PF01134 GIDA: Glucose inhibit 93.7 0.24 5.1E-06 44.8 7.0 54 48-110 96-150 (392)
127 PRK07803 sdhA succinate dehydr 93.7 0.36 7.8E-06 46.3 8.7 59 47-110 138-211 (626)
128 TIGR02032 GG-red-SF geranylger 93.6 0.32 6.9E-06 41.0 7.5 62 48-117 92-154 (295)
129 PRK13339 malate:quinone oxidor 93.6 0.38 8.1E-06 44.9 8.4 60 48-112 185-247 (497)
130 KOG2820 FAD-dependent oxidored 93.6 0.29 6.4E-06 43.2 7.1 66 47-119 153-218 (399)
131 PRK06370 mercuric reductase; V 93.6 0.35 7.5E-06 44.5 8.1 57 48-110 213-269 (463)
132 TIGR01421 gluta_reduc_1 glutat 93.6 0.3 6.6E-06 44.8 7.7 58 46-111 206-264 (450)
133 PRK01747 mnmC bifunctional tRN 93.6 0.18 3.8E-06 48.7 6.4 55 48-112 409-463 (662)
134 PRK06069 sdhA succinate dehydr 93.5 0.4 8.7E-06 45.5 8.7 58 48-110 138-198 (577)
135 TIGR02053 MerA mercuric reduct 93.5 0.35 7.6E-06 44.4 8.1 57 48-110 208-264 (463)
136 TIGR01984 UbiH 2-polyprenyl-6- 93.5 0.27 5.8E-06 43.6 7.1 62 48-118 106-169 (382)
137 TIGR01424 gluta_reduc_2 glutat 93.5 0.29 6.2E-06 44.8 7.4 55 47-110 207-261 (446)
138 PRK12266 glpD glycerol-3-phosp 93.5 0.41 8.8E-06 44.7 8.5 59 48-112 156-216 (508)
139 PF04820 Trp_halogenase: Trypt 93.4 0.28 6E-06 45.2 7.2 57 48-112 155-211 (454)
140 PRK05714 2-octaprenyl-3-methyl 93.4 0.3 6.5E-06 43.8 7.2 62 48-118 113-175 (405)
141 PRK06834 hypothetical protein; 93.3 0.28 6E-06 45.6 7.1 62 48-118 101-163 (488)
142 PF13454 NAD_binding_9: FAD-NA 93.2 0.22 4.7E-06 38.9 5.4 94 8-110 50-155 (156)
143 TIGR01988 Ubi-OHases Ubiquinon 93.2 0.35 7.5E-06 42.7 7.3 61 48-117 107-169 (385)
144 TIGR01292 TRX_reduct thioredox 93.0 0.4 8.6E-06 40.7 7.2 55 47-111 57-111 (300)
145 PRK10262 thioredoxin reductase 93.0 0.3 6.4E-06 42.5 6.5 58 48-110 186-246 (321)
146 PRK06184 hypothetical protein; 93.0 0.55 1.2E-05 43.6 8.6 64 49-118 111-175 (502)
147 PRK07845 flavoprotein disulfid 92.9 0.35 7.6E-06 44.6 7.2 54 48-110 219-272 (466)
148 TIGR03169 Nterm_to_SelD pyridi 92.8 0.31 6.8E-06 43.0 6.4 51 48-111 192-242 (364)
149 PRK07045 putative monooxygenas 92.8 0.54 1.2E-05 41.9 8.0 62 48-116 107-170 (388)
150 PRK14694 putative mercuric red 92.7 0.47 1E-05 43.7 7.7 54 47-110 218-271 (468)
151 PF06039 Mqo: Malate:quinone o 92.7 0.66 1.4E-05 42.7 8.3 61 48-113 182-245 (488)
152 PRK09077 L-aspartate oxidase; 92.5 0.78 1.7E-05 43.1 9.0 62 47-110 138-205 (536)
153 PRK06115 dihydrolipoamide dehy 92.5 0.6 1.3E-05 43.0 8.1 58 48-111 216-275 (466)
154 PRK08071 L-aspartate oxidase; 92.5 0.46 1E-05 44.4 7.4 56 48-110 131-188 (510)
155 PRK07190 hypothetical protein; 92.4 0.57 1.2E-05 43.5 7.8 61 49-118 111-172 (487)
156 PRK05976 dihydrolipoamide dehy 92.4 0.58 1.3E-05 43.1 7.8 57 48-111 222-280 (472)
157 PRK08641 sdhA succinate dehydr 92.3 0.7 1.5E-05 44.0 8.5 61 46-110 132-198 (589)
158 PRK06185 hypothetical protein; 92.3 0.7 1.5E-05 41.4 8.1 65 48-118 109-176 (407)
159 PRK07818 dihydrolipoamide dehy 92.3 0.64 1.4E-05 42.8 7.9 56 48-110 214-271 (466)
160 TIGR03364 HpnW_proposed FAD de 92.2 0.42 9.1E-06 42.2 6.5 51 48-112 146-197 (365)
161 PRK13369 glycerol-3-phosphate 92.2 0.66 1.4E-05 43.2 8.0 57 48-111 156-214 (502)
162 TIGR01176 fum_red_Fp fumarate 92.1 0.87 1.9E-05 43.3 8.8 60 46-110 131-193 (580)
163 TIGR01292 TRX_reduct thioredox 92.1 0.68 1.5E-05 39.2 7.5 55 50-110 179-236 (300)
164 PRK07588 hypothetical protein; 92.0 0.49 1.1E-05 42.2 6.7 58 49-116 105-163 (391)
165 TIGR01316 gltA glutamate synth 92.0 0.78 1.7E-05 42.1 8.1 55 52-110 314-385 (449)
166 TIGR01810 betA choline dehydro 92.0 0.39 8.4E-06 45.0 6.2 46 58-110 205-253 (532)
167 PRK14727 putative mercuric red 91.9 0.63 1.4E-05 43.0 7.5 54 48-111 229-282 (479)
168 PRK09897 hypothetical protein; 91.9 0.68 1.5E-05 43.6 7.7 55 48-110 108-164 (534)
169 PRK09231 fumarate reductase fl 91.9 0.86 1.9E-05 43.3 8.6 59 47-110 133-194 (582)
170 PTZ00052 thioredoxin reductase 91.9 0.64 1.4E-05 43.3 7.5 56 47-111 222-277 (499)
171 TIGR01438 TGR thioredoxin and 91.9 0.68 1.5E-05 43.0 7.7 58 47-110 220-277 (484)
172 PRK06912 acoL dihydrolipoamide 91.9 0.76 1.7E-05 42.2 7.9 53 48-110 212-266 (458)
173 TIGR02462 pyranose_ox pyranose 91.7 0.66 1.4E-05 43.8 7.4 66 49-117 216-285 (544)
174 PRK13512 coenzyme A disulfide 91.6 0.53 1.1E-05 43.0 6.6 51 47-110 189-239 (438)
175 PRK08020 ubiF 2-octaprenyl-3-m 91.6 0.76 1.6E-05 40.9 7.4 62 48-118 113-176 (391)
176 PRK06327 dihydrolipoamide dehy 91.5 0.82 1.8E-05 42.2 7.8 57 47-110 224-282 (475)
177 PRK07251 pyridine nucleotide-d 91.5 0.85 1.8E-05 41.5 7.8 53 48-110 199-251 (438)
178 PRK11749 dihydropyrimidine deh 91.5 0.9 1.9E-05 41.7 8.0 54 52-110 316-385 (457)
179 PF01494 FAD_binding_3: FAD bi 91.5 0.68 1.5E-05 39.9 6.8 65 48-118 112-179 (356)
180 PRK08163 salicylate hydroxylas 91.4 0.88 1.9E-05 40.6 7.7 56 48-112 110-166 (396)
181 PRK08010 pyridine nucleotide-d 91.4 0.75 1.6E-05 41.9 7.3 53 48-110 200-252 (441)
182 PLN02815 L-aspartate oxidase 91.4 0.79 1.7E-05 43.8 7.6 61 47-109 155-219 (594)
183 PF07156 Prenylcys_lyase: Pren 91.3 0.68 1.5E-05 41.6 6.7 56 53-112 131-187 (368)
184 PF12831 FAD_oxidored: FAD dep 91.3 0.059 1.3E-06 49.1 0.0 65 48-117 91-155 (428)
185 COG0578 GlpA Glycerol-3-phosph 91.1 0.77 1.7E-05 43.1 7.1 86 48-147 165-254 (532)
186 TIGR03140 AhpF alkyl hydropero 91.0 0.85 1.8E-05 42.6 7.4 55 48-111 268-322 (515)
187 PTZ00306 NADH-dependent fumara 90.8 0.94 2E-05 46.7 8.1 62 48-109 545-617 (1167)
188 PRK08013 oxidoreductase; Provi 90.8 0.78 1.7E-05 41.2 6.7 61 48-117 112-174 (400)
189 PRK07608 ubiquinone biosynthes 90.7 0.83 1.8E-05 40.6 6.8 60 48-117 112-173 (388)
190 PRK07364 2-octaprenyl-6-methox 90.7 0.82 1.8E-05 41.0 6.8 65 48-118 122-188 (415)
191 PTZ00058 glutathione reductase 90.6 1.2 2.6E-05 42.3 8.1 57 47-110 278-334 (561)
192 COG3075 GlpB Anaerobic glycero 90.6 1.3 2.8E-05 39.3 7.5 75 37-119 245-324 (421)
193 KOG1439 RAB proteins geranylge 90.6 1.7 3.6E-05 39.3 8.4 66 35-109 221-286 (440)
194 PRK12810 gltD glutamate syntha 90.6 1.1 2.3E-05 41.4 7.6 53 53-110 335-398 (471)
195 COG1249 Lpd Pyruvate/2-oxoglut 90.5 1 2.2E-05 41.6 7.3 61 47-116 214-277 (454)
196 PRK13748 putative mercuric red 90.4 1.1 2.3E-05 42.2 7.6 53 48-110 311-363 (561)
197 PRK09126 hypothetical protein; 90.4 1.1 2.3E-05 39.9 7.2 60 49-117 112-173 (392)
198 TIGR01318 gltD_gamma_fam gluta 90.4 1.4 3.1E-05 40.6 8.2 55 52-110 325-396 (467)
199 COG1251 NirB NAD(P)H-nitrite r 90.4 0.3 6.4E-06 47.2 3.7 52 50-110 190-241 (793)
200 PRK06475 salicylate hydroxylas 90.3 1.6 3.5E-05 39.1 8.3 65 48-118 108-174 (400)
201 PRK12769 putative oxidoreducta 90.2 1.3 2.8E-05 42.7 8.1 56 51-110 510-582 (654)
202 PRK08244 hypothetical protein; 90.0 1.4 2.9E-05 40.9 7.8 64 48-118 101-166 (493)
203 TIGR03140 AhpF alkyl hydropero 89.7 1.5 3.1E-05 41.1 7.8 55 51-110 391-448 (515)
204 COG0644 FixC Dehydrogenases (f 89.7 1.6 3.5E-05 39.2 7.9 62 48-117 96-158 (396)
205 TIGR00031 UDP-GALP_mutase UDP- 89.6 0.25 5.4E-06 44.5 2.5 87 11-114 160-249 (377)
206 COG0446 HcaD Uncharacterized N 89.6 1.2 2.5E-05 39.4 6.9 56 47-110 178-235 (415)
207 PRK08850 2-octaprenyl-6-methox 89.6 1.1 2.4E-05 40.2 6.7 61 49-118 113-175 (405)
208 PRK06996 hypothetical protein; 89.5 1.2 2.7E-05 39.9 6.9 55 48-109 116-171 (398)
209 PRK15317 alkyl hydroperoxide r 89.4 1.5 3.3E-05 41.0 7.6 54 48-110 267-320 (517)
210 PRK08243 4-hydroxybenzoate 3-m 89.3 1.3 2.8E-05 39.7 6.9 63 48-118 104-170 (392)
211 TIGR01372 soxA sarcosine oxida 89.0 1.7 3.7E-05 44.1 8.1 56 49-110 353-409 (985)
212 PLN02697 lycopene epsilon cycl 88.9 1.8 3.9E-05 40.8 7.7 56 48-112 193-248 (529)
213 PRK12831 putative oxidoreducta 88.7 1.9 4.1E-05 39.8 7.7 52 55-110 326-394 (464)
214 PRK07494 2-octaprenyl-6-methox 88.6 1.3 2.9E-05 39.3 6.5 62 48-118 112-174 (388)
215 PRK05732 2-octaprenyl-6-methox 88.6 1.6 3.5E-05 38.7 7.0 60 49-117 114-175 (395)
216 PLN02546 glutathione reductase 88.5 1.8 3.9E-05 41.0 7.5 58 46-111 292-349 (558)
217 PRK05192 tRNA uridine 5-carbox 88.4 1.4 3.1E-05 42.1 6.7 54 48-110 101-155 (618)
218 TIGR01790 carotene-cycl lycope 88.3 1.7 3.7E-05 38.6 7.0 57 47-112 85-141 (388)
219 PRK06126 hypothetical protein; 88.1 2.6 5.6E-05 39.6 8.3 64 49-118 128-195 (545)
220 PRK05868 hypothetical protein; 88.0 1.5 3.3E-05 39.1 6.4 50 59-117 116-166 (372)
221 PRK08849 2-octaprenyl-3-methyl 87.9 1.9 4.1E-05 38.4 7.0 59 50-117 113-173 (384)
222 PRK12770 putative glutamate sy 87.5 2.3 5E-05 37.5 7.2 55 51-111 214-285 (352)
223 TIGR00136 gidA glucose-inhibit 87.4 1.9 4.2E-05 41.2 6.9 56 48-111 97-153 (617)
224 TIGR02061 aprA adenosine phosp 87.3 3.3 7.1E-05 39.8 8.5 61 48-110 127-189 (614)
225 PLN02463 lycopene beta cyclase 87.3 2.2 4.8E-05 39.3 7.1 54 48-111 115-168 (447)
226 KOG0404 Thioredoxin reductase 87.2 1.1 2.4E-05 37.6 4.6 71 38-119 61-131 (322)
227 KOG1335 Dihydrolipoamide dehyd 87.1 2.6 5.7E-05 38.1 7.1 60 45-109 250-311 (506)
228 COG0665 DadA Glycine/D-amino a 86.7 3.1 6.6E-05 36.7 7.6 55 48-112 157-212 (387)
229 PRK15317 alkyl hydroperoxide r 86.6 2.7 5.9E-05 39.2 7.5 55 51-110 390-447 (517)
230 PLN02661 Putative thiazole syn 86.3 3.4 7.4E-05 36.9 7.5 58 48-110 173-242 (357)
231 PRK02106 choline dehydrogenase 85.8 1.3 2.9E-05 41.7 5.1 47 59-110 213-260 (560)
232 PRK04965 NADH:flavorubredoxin 85.7 2.5 5.4E-05 37.6 6.5 47 53-111 64-110 (377)
233 PRK12809 putative oxidoreducta 85.6 3.8 8.2E-05 39.5 8.0 52 55-110 497-565 (639)
234 PRK08132 FAD-dependent oxidore 85.4 4.5 9.7E-05 38.0 8.3 63 49-118 127-192 (547)
235 TIGR01989 COQ6 Ubiquinone bios 85.4 3 6.4E-05 38.0 6.9 65 48-118 118-190 (437)
236 TIGR02374 nitri_red_nirB nitri 85.0 2.1 4.5E-05 42.3 6.1 49 52-111 59-107 (785)
237 KOG2404 Fumarate reductase, fl 84.9 2.3 5E-05 37.7 5.5 56 48-109 140-203 (477)
238 TIGR03452 mycothione_red mycot 84.8 3.8 8.1E-05 37.6 7.4 54 48-111 211-264 (452)
239 PF05834 Lycopene_cycl: Lycope 84.8 2.7 5.8E-05 37.5 6.3 55 47-111 87-141 (374)
240 PRK07236 hypothetical protein; 84.8 2.8 6.2E-05 37.3 6.4 50 61-119 112-163 (386)
241 TIGR03219 salicylate_mono sali 84.7 2.5 5.4E-05 38.0 6.1 58 49-117 107-165 (414)
242 PRK06183 mhpA 3-(3-hydroxyphen 84.6 3.9 8.5E-05 38.3 7.6 62 50-118 116-181 (538)
243 PRK07846 mycothione reductase; 84.6 3.5 7.6E-05 37.8 7.1 54 48-111 208-261 (451)
244 PRK06617 2-octaprenyl-6-methox 84.4 3.6 7.7E-05 36.6 6.9 60 48-117 105-166 (374)
245 KOG2844 Dimethylglycine dehydr 84.4 2 4.4E-05 41.4 5.3 56 48-112 188-243 (856)
246 PLN02172 flavin-containing mon 84.2 3.8 8.2E-05 37.9 7.1 57 47-110 111-171 (461)
247 PRK09754 phenylpropionate diox 84.1 2.8 6E-05 37.7 6.1 46 55-111 66-111 (396)
248 PRK09564 coenzyme A disulfide 83.9 2.6 5.6E-05 38.3 5.9 54 50-111 59-114 (444)
249 PRK13800 putative oxidoreducta 83.6 4.9 0.00011 40.3 8.1 60 46-110 138-203 (897)
250 TIGR03385 CoA_CoA_reduc CoA-di 83.0 4.5 9.7E-05 36.6 7.0 49 54-110 51-101 (427)
251 PRK07538 hypothetical protein; 83.0 5.7 0.00012 35.8 7.7 63 49-117 104-171 (413)
252 PRK12778 putative bifunctional 82.8 4.8 0.0001 39.5 7.5 53 55-111 616-685 (752)
253 PRK12775 putative trifunctiona 82.5 4.9 0.00011 40.9 7.6 53 54-110 616-684 (1006)
254 PRK13984 putative oxidoreducta 82.1 4.8 0.0001 38.4 7.1 50 57-111 472-537 (604)
255 TIGR03169 Nterm_to_SelD pyridi 81.9 2.1 4.5E-05 37.8 4.3 50 49-110 56-105 (364)
256 PRK06753 hypothetical protein; 81.6 4.7 0.0001 35.5 6.5 58 49-117 100-158 (373)
257 PF07992 Pyr_redox_2: Pyridine 81.1 3.2 6.9E-05 32.9 4.8 55 52-111 63-121 (201)
258 PRK06292 dihydrolipoamide dehy 80.6 6.6 0.00014 35.9 7.3 56 47-110 210-266 (460)
259 PRK06467 dihydrolipoamide dehy 80.3 7.8 0.00017 35.8 7.7 58 47-111 215-273 (471)
260 COG4716 Myosin-crossreactive a 80.3 3.6 7.9E-05 37.2 5.1 69 10-78 186-258 (587)
261 PRK14989 nitrite reductase sub 78.9 3.3 7.1E-05 41.3 5.0 48 53-111 65-112 (847)
262 COG1635 THI4 Ribulose 1,5-bisp 78.4 12 0.00026 31.4 7.3 61 48-112 110-178 (262)
263 PRK12771 putative glutamate sy 78.1 10 0.00022 35.9 7.9 52 55-111 313-379 (564)
264 PTZ00153 lipoamide dehydrogena 77.5 10 0.00023 36.7 7.8 60 48-111 354-426 (659)
265 PRK11445 putative oxidoreducta 77.3 12 0.00026 33.0 7.6 60 49-117 101-163 (351)
266 KOG1346 Programmed cell death 77.2 2.7 5.8E-05 38.5 3.4 55 47-110 393-447 (659)
267 PF01946 Thi4: Thi4 family; PD 76.4 14 0.0003 30.9 7.1 60 49-112 98-165 (230)
268 COG0492 TrxB Thioredoxin reduc 76.1 9.5 0.00021 33.3 6.5 64 38-112 52-115 (305)
269 TIGR02360 pbenz_hydroxyl 4-hyd 75.5 11 0.00023 33.8 6.9 65 48-119 104-171 (390)
270 COG3573 Predicted oxidoreducta 74.9 5.4 0.00012 35.6 4.6 37 48-89 150-190 (552)
271 KOG0042 Glycerol-3-phosphate d 74.8 21 0.00046 33.8 8.6 97 37-147 213-314 (680)
272 TIGR02023 BchP-ChlP geranylger 74.6 13 0.00028 33.1 7.3 63 48-117 93-161 (388)
273 PF13434 K_oxygenase: L-lysine 71.0 9.3 0.0002 33.8 5.3 44 62-110 294-339 (341)
274 KOG1336 Monodehydroascorbate/f 70.2 8.4 0.00018 35.6 4.9 51 49-110 129-179 (478)
275 KOG0405 Pyridine nucleotide-di 69.4 12 0.00026 33.6 5.5 64 44-115 227-291 (478)
276 COG2303 BetA Choline dehydroge 68.9 11 0.00023 35.7 5.5 49 57-110 213-264 (542)
277 PRK12779 putative bifunctional 67.8 23 0.0005 35.9 7.9 51 57-110 494-560 (944)
278 COG5044 MRS6 RAB proteins gera 67.7 13 0.00028 33.6 5.4 65 35-110 218-282 (434)
279 PRK13512 coenzyme A disulfide 67.5 17 0.00037 33.1 6.5 48 55-110 66-115 (438)
280 PRK08294 phenol 2-monooxygenas 67.1 29 0.00062 33.5 8.1 67 49-118 143-217 (634)
281 COG0445 GidA Flavin-dependent 67.1 7 0.00015 37.0 3.8 56 48-110 101-156 (621)
282 TIGR03143 AhpF_homolog putativ 65.3 23 0.00051 33.4 7.1 52 48-110 61-112 (555)
283 COG3486 IucD Lysine/ornithine 64.6 13 0.00028 33.9 4.8 51 62-117 293-346 (436)
284 PLN02985 squalene monooxygenas 63.7 39 0.00084 31.7 8.2 64 48-118 148-215 (514)
285 COG1251 NirB NAD(P)H-nitrite r 63.6 12 0.00026 36.6 4.7 60 49-120 61-121 (793)
286 PLN00093 geranylgeranyl diphos 60.6 41 0.00088 31.0 7.6 66 48-117 133-205 (450)
287 PLN02927 antheraxanthin epoxid 59.8 25 0.00055 34.2 6.2 51 60-119 204-257 (668)
288 COG2072 TrkA Predicted flavopr 59.7 38 0.00082 31.1 7.2 55 49-110 84-142 (443)
289 PTZ00318 NADH dehydrogenase-li 58.8 25 0.00055 31.8 5.9 55 48-111 63-124 (424)
290 PRK12814 putative NADPH-depend 58.3 47 0.001 32.2 7.9 50 58-110 372-435 (652)
291 PF00743 FMO-like: Flavin-bind 57.8 18 0.00039 34.2 4.8 62 47-112 84-150 (531)
292 TIGR02028 ChlP geranylgeranyl 57.5 56 0.0012 29.4 7.8 66 48-117 94-166 (398)
293 COG0492 TrxB Thioredoxin reduc 57.3 35 0.00076 29.8 6.3 64 38-110 171-236 (305)
294 TIGR01789 lycopene_cycl lycope 56.6 21 0.00045 31.9 4.8 47 49-111 91-137 (370)
295 PRK10262 thioredoxin reductase 55.9 56 0.0012 28.1 7.4 53 48-111 64-116 (321)
296 TIGR01424 gluta_reduc_2 glutat 55.1 32 0.0007 31.4 6.0 49 49-110 92-140 (446)
297 TIGR03143 AhpF_homolog putativ 54.5 45 0.00098 31.5 7.0 52 53-110 184-244 (555)
298 COG0029 NadB Aspartate oxidase 54.4 42 0.00092 31.4 6.4 67 38-109 124-193 (518)
299 TIGR01317 GOGAT_sm_gam glutama 53.9 41 0.00089 31.2 6.5 53 54-110 343-412 (485)
300 PLN02785 Protein HOTHEAD 53.3 36 0.00079 32.5 6.2 39 53-92 226-264 (587)
301 PF13434 K_oxygenase: L-lysine 50.7 27 0.00059 30.9 4.6 61 48-110 96-157 (341)
302 PF03197 FRD2: Bacteriophage F 49.1 56 0.0012 23.5 5.0 40 53-102 2-41 (102)
303 PRK06116 glutathione reductase 44.9 51 0.0011 30.0 5.6 46 50-110 96-141 (450)
304 PRK06567 putative bifunctional 44.4 68 0.0015 32.9 6.6 50 56-109 649-725 (1028)
305 TIGR01421 gluta_reduc_1 glutat 44.2 59 0.0013 29.8 5.9 45 51-110 95-139 (450)
306 PRK12779 putative bifunctional 44.2 26 0.00055 35.6 3.7 34 38-71 347-380 (944)
307 PTZ00367 squalene epoxidase; P 42.6 70 0.0015 30.5 6.2 67 49-117 133-225 (567)
308 PRK06416 dihydrolipoamide dehy 40.9 69 0.0015 29.2 5.8 49 51-110 96-144 (462)
309 PLN02546 glutathione reductase 39.9 68 0.0015 30.5 5.7 47 49-110 180-226 (558)
310 PRK09853 putative selenate red 39.7 88 0.0019 32.1 6.7 54 51-111 712-778 (1019)
311 PRK07845 flavoprotein disulfid 38.1 89 0.0019 28.7 6.1 51 50-110 95-149 (466)
312 COG1445 FrwB Phosphotransferas 35.4 26 0.00055 26.3 1.7 53 50-117 21-74 (122)
313 KOG4716 Thioredoxin reductase 35.4 70 0.0015 28.8 4.6 65 43-112 234-300 (503)
314 COG1053 SdhA Succinate dehydro 35.2 83 0.0018 30.0 5.5 63 46-112 137-202 (562)
315 KOG2415 Electron transfer flav 35.1 56 0.0012 30.3 4.0 60 48-111 184-255 (621)
316 KOG4405 GDP dissociation inhib 34.0 1.3E+02 0.0028 27.9 6.0 90 11-107 248-340 (547)
317 PRK06370 mercuric reductase; V 32.5 1.1E+02 0.0024 27.9 5.8 44 52-110 99-143 (463)
318 PRK05976 dihydrolipoamide dehy 31.6 1.3E+02 0.0028 27.6 6.0 52 52-110 97-152 (472)
319 COG0493 GltD NADPH-dependent g 29.6 54 0.0012 30.4 3.1 39 37-75 163-202 (457)
320 PRK05249 soluble pyridine nucl 29.0 1.6E+02 0.0034 26.8 6.2 48 51-110 98-147 (461)
321 TIGR03315 Se_ygfK putative sel 28.3 2.4E+02 0.0052 29.1 7.6 53 51-111 710-775 (1012)
322 PRK12778 putative bifunctional 28.0 38 0.00083 33.3 2.0 33 38-70 472-504 (752)
323 PLN02852 ferredoxin-NADP+ redu 27.6 2.7E+02 0.0058 26.1 7.4 50 60-111 288-353 (491)
324 KOG2311 NAD/FAD-utilizing prot 27.6 85 0.0018 29.6 3.9 59 48-110 125-184 (679)
325 PLN02507 glutathione reductase 27.5 1.7E+02 0.0036 27.3 6.1 46 53-110 130-177 (499)
326 PF02882 THF_DHG_CYH_C: Tetrah 26.9 96 0.0021 24.4 3.7 75 17-113 18-92 (160)
327 PRK14181 bifunctional 5,10-met 26.7 1.3E+02 0.0028 26.2 4.7 79 16-112 134-212 (287)
328 PRK09853 putative selenate red 26.3 1.3E+02 0.0029 30.9 5.4 28 48-76 590-617 (1019)
329 PF10354 DUF2431: Domain of un 26.1 77 0.0017 25.0 3.1 45 51-112 43-87 (166)
330 PF01524 Gemini_V1: Geminiviru 25.6 1.5E+02 0.0033 20.3 4.0 53 1-61 1-53 (78)
331 TIGR01316 gltA glutamate synth 25.3 42 0.00091 30.7 1.7 31 40-70 176-206 (449)
332 PRK14180 bifunctional 5,10-met 24.1 1.7E+02 0.0036 25.4 5.0 76 16-113 139-214 (282)
333 PRK04966 hypothetical protein; 23.9 2.4E+02 0.0052 19.1 4.9 62 11-74 2-63 (72)
334 PF14542 Acetyltransf_CG: GCN5 23.7 68 0.0015 21.8 2.1 27 44-70 38-64 (78)
335 PRK14189 bifunctional 5,10-met 23.5 1.6E+02 0.0034 25.5 4.7 74 17-112 140-213 (285)
336 PRK11749 dihydropyrimidine deh 23.1 80 0.0017 28.9 3.1 26 46-71 189-214 (457)
337 PRK06327 dihydrolipoamide dehy 22.5 2.5E+02 0.0055 25.7 6.3 53 51-111 104-156 (475)
338 PRK12831 putative oxidoreducta 22.1 86 0.0019 28.9 3.0 23 49-71 193-215 (464)
339 PRK06467 dihydrolipoamide dehy 21.9 2.2E+02 0.0048 26.1 5.8 46 53-110 99-146 (471)
340 PF15647 Tox-REase-3: Restrict 21.5 94 0.002 22.5 2.4 20 49-68 88-107 (109)
341 PRK14176 bifunctional 5,10-met 20.6 2.1E+02 0.0047 24.8 5.0 74 17-112 146-219 (287)
No 1
>PLN02487 zeta-carotene desaturase
Probab=100.00 E-value=2.1e-32 Score=254.40 Aligned_cols=230 Identities=83% Similarity=1.381 Sum_probs=185.3
Q ss_pred CchHHHHHcCCCCCCcccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCC
Q 026885 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~ 80 (231)
||+|+|++++|.+++++||++++++|..|..+.++++++|++|++++.|+++++++|+++||+|+++++|++|+.+++.+
T Consensus 249 l~dPll~~~~~~~~d~~SA~~~~~vl~~~~~~~~~~~l~~~~Gg~~~~l~~pl~~~L~~~Gg~V~l~~~V~~I~~~~~~~ 328 (569)
T PLN02487 249 MWDPIAYALGFIDCDNISARCMLTIFSLFATKTEASLLRMLKGSPDVRLSGPIAKYITDRGGRFHLRWGCREILYDKSPD 328 (569)
T ss_pred HHHHHHHHhhCCCHHHHHHHHHHHHHHHHhhcCCcceeeecCCCchHHHHHHHHHHHHHcCCEEEeCCceEEEEEecCCC
Confidence 69999999999999999999999999766645667889999999998899999999999999999999999999984201
Q ss_pred CcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhCCCCCcEEEEEEEecCccchhhhhHHHHH
Q 026885 81 AETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQ 160 (231)
Q Consensus 81 ~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~ 160 (231)
|..++++|++.++++++.+.+|+||+|+|++.+++|+|+.+...+.++++..|++.||++||||||++++.....+...+
T Consensus 329 g~~~v~gv~~~~~~~~~~~~aD~VV~A~p~~~~~~Llp~~~~~~~~~~~l~~L~~~pi~tv~L~~d~~v~~~~~~~~~r~ 408 (569)
T PLN02487 329 GETYVTGLKVSKATEKEIVKADAYVAACDVPGIKRLLPEQWREYEFFDNIYKLVGVPVVTVQLRYNGWVTEMQDLELSRQ 408 (569)
T ss_pred CceeEEEEEEecCCCceEEECCEEEECCCHHHHHHhCCchhhccHHHhHHhcCCCeeEEEEEEEeccccccccccccccc
Confidence 21148888874223566789999999999999999999876666778899999999999999999998874332221122
Q ss_pred hhhhcCCCcceecCCCCcceeecccCCCCcccccCCCceEEEEEeecCCCCCCCCHHHHHHHHHHHhhcc
Q 026885 161 LRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~eel~~~~~~~L~~~ 230 (231)
+.+...++++.+..+..+++|.+.+++++++|+.++.+++++++++++++++.+++|||+++++++|+++
T Consensus 409 l~~~~g~~~~~~~~~~~~~f~~di~l~~~~~~~~~~~g~~l~~vis~a~~~~~~~~~ei~~~~~~~L~~~ 478 (569)
T PLN02487 409 LRRAAGLDNLLYSADADFSCFADLALTSPEDYYKEGEGSLIQAVLTPGDPYMPLSNDKIVEKVHKQVLEL 478 (569)
T ss_pred ccccccccccccccCCCcceEeeeecCCHHHHcccCCceEEEEEEcCCccccCCCHHHHHHHHHHHHHHh
Confidence 2111135565566666777888877777755544455689999999999999999999999999999865
No 2
>TIGR02732 zeta_caro_desat carotene 7,8-desaturase. Carotene 7,8-desaturase, also called zeta-carotene desaturase, catalyzes multiple steps in the pathway from geranylgeranyl-PP to all-trans-lycopene in plants and cyanobacteria. A similar enzyme and pathway is found in the green sulfur bacterium Chlorobium tepidum.
Probab=99.97 E-value=3.6e-29 Score=229.50 Aligned_cols=230 Identities=73% Similarity=1.222 Sum_probs=179.3
Q ss_pred CchHHHHHcCCCCCCcccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCC
Q 026885 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~ 80 (231)
||+|||.+++|.+++++||++++.+++.|..+.+++.+++++|++++.+.++|.++|+++||+|++|++|++|+.+++.+
T Consensus 173 ~~~Pll~~~~~~~~~~~Sa~~~~~~~~~~~~~~~~s~~~~~~g~~~~~l~~pl~~~L~~~Gg~i~~~~~V~~I~~~~~~~ 252 (474)
T TIGR02732 173 MWDPIAYALGFIDCENISARCMLTIFMLFAAKTEASKLRMLKGSPDKYLTKPILEYIEARGGKFHLRHKVREIKYEKSSD 252 (474)
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCcceeeeecCCcchhHHHHHHHHHHHCCCEEECCCEEEEEEEecCCC
Confidence 69999999999999999999999999987777778899999999988899999999999999999999999999864100
Q ss_pred CcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhCCCCCcEEEEEEEecCccchhhhhHHHHH
Q 026885 81 AETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQ 160 (231)
Q Consensus 81 ~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~ 160 (231)
+..++++|++..+.+++++.||+||+|+|++.+.+|+++.+...+.++.+.++++.|+++|+|+||+++..-...+....
T Consensus 253 ~~~~v~~v~~~~g~~~~~~~aD~VVlA~p~~~~~~Ll~~~~~~~~~~~~l~~l~~~pi~~v~l~~~~~v~~~~~~~~~~~ 332 (474)
T TIGR02732 253 GSTRVTGLIMSKPEGKKVIKADAYVAACDVPGIKRLLPQEWRQFEEFDNIYKLDAVPVATVQLRYDGWVTELQDLAKRKQ 332 (474)
T ss_pred CceeEEEEEEecCCcceEEECCEEEECCChHHHHhhCChhhhcCHHHhhHhcCCCCCeEEEEEEeccccccccchhhhhc
Confidence 20037787774211236689999999999999999999765445677889999999999999999998762111111111
Q ss_pred hhhhcCCCcceecCCCCcceeecccCCCCcccccCCCceEEEEEeecCCCCCCCCHHHHHHHHHHHhhcc
Q 026885 161 LRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~eel~~~~~~~L~~~ 230 (231)
+.....++++++..+..+++|.+.++++|.+|++.+.+.+++++++++++++++++|||+++++++|+++
T Consensus 333 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~L~~~ 402 (474)
T TIGR02732 333 LKRAAGLDNLLYTADADFSCFADLALTSPDDYYKEGQGSLLQCVLTPGDPWMPESNEEIAKRVDKQVRAL 402 (474)
T ss_pred ccccccccccccccCccceeeehhhccCHHHHhccCCCeEEEEEEeChhhhcCCCHHHHHHHHHHHHHHh
Confidence 1011135666666655667777777676744555555567899999999999999999999999999875
No 3
>PLN02612 phytoene desaturase
Probab=99.94 E-value=2e-25 Score=208.71 Aligned_cols=207 Identities=29% Similarity=0.555 Sum_probs=174.4
Q ss_pred CchHHHHHcCCCCCCcccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCC
Q 026885 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~ 80 (231)
+|+||+.+..|.+|+++|+.+++..+..|+...+++.++++.|++.+.++++|++.|+++|++|++|++|++|+.+++
T Consensus 262 ~~~~l~~~~~~~~p~~~S~~~~l~~l~~~l~~~~gs~~~~~~G~~~~~l~~~l~~~l~~~G~~I~l~~~V~~I~~~~~-- 339 (567)
T PLN02612 262 VFIAMSKALNFINPDELSMQCILIALNRFLQEKHGSKMAFLDGNPPERLCMPIVDHFQSLGGEVRLNSRIKKIELNDD-- 339 (567)
T ss_pred HHHHHHHHhcCCCHHHhhHHHHHHHHHHHHhccCCceEeeecCCchHHHHHHHHHHHHhcCCEEEeCCeeeEEEECCC--
Confidence 589999999999999999999999998876667788999999998778999999999999999999999999999763
Q ss_pred CcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhCCCCCcEEEEEEEecCccchhhhhHHHHH
Q 026885 81 AETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQ 160 (231)
Q Consensus 81 ~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~ 160 (231)
| ++++|++. +|+++.||+||+|+|+..+++|+++.+.+.++++++.++.+.++++++|+||+++..
T Consensus 340 g--~v~~v~~~---~G~~~~ad~VI~a~p~~~l~~Ll~~~~~~~~~~~~l~~l~~~~v~~v~l~~dr~~~~--------- 405 (567)
T PLN02612 340 G--TVKHFLLT---NGSVVEGDVYVSATPVDILKLLLPDQWKEIPYFKKLDKLVGVPVINVHIWFDRKLKN--------- 405 (567)
T ss_pred C--cEEEEEEC---CCcEEECCEEEECCCHHHHHHhCcchhcCcHHHHHHHhcCCCCeEEEEEEECcccCC---------
Confidence 5 67788874 788999999999999999999998765555677888889999999999999998741
Q ss_pred hhhhcCCCcceecCCCCcceeecccCCCCcccccCCCceEEEEEeecCCCCCCCCHHHHHHHHHHHhhcc
Q 026885 161 LRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 161 l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~eel~~~~~~~L~~~ 230 (231)
..+++++.+++..+++.+++...+ ++++++ ++++.++++++++|.++++||+++.++++|+++
T Consensus 406 -----~~~~~~~~~~~~~~~~~d~S~~~~-~~~~~~-~~ll~~~~~~a~~~~~~sdeei~e~vl~~L~~l 468 (567)
T PLN02612 406 -----TYDHLLFSRSPLLSVYADMSTTCK-EYYDPN-KSMLELVFAPAEEWISRSDEDIIDATMKELAKL 468 (567)
T ss_pred -----CCCceeecCCCCceeehhhhhcch-hhcCCC-CeEEEEEEEcChhhhcCCHHHHHHHHHHHHHHH
Confidence 345677776666667776665555 355555 467788888889999999999999999999875
No 4
>TIGR02731 phytoene_desat phytoene desaturase. Plants and cyanobacteria (and, supposedly, Chlorobium tepidum) have a conserved pathway from two molecules geranylgeranyl-PP to one of all-trans-lycopene. Members of this family are the enzyme pytoene desaturase (also called phytoene dehydrogenase). This model does not include the region of the chloroplast transit peptide in plants. A closely related family, excluded by this model, is zeta-carotene desaturase, another enzyme in the same pathway.
Probab=99.91 E-value=1.1e-22 Score=185.36 Aligned_cols=206 Identities=32% Similarity=0.559 Sum_probs=161.0
Q ss_pred CchHHHHHcCCCCCCcccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCC
Q 026885 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~ 80 (231)
||+|++.++.+.+|+++|+.+++..++.+.....++..++.+|+....++++|.+.++++|++|++|++|++|+.+++
T Consensus 167 ~~~pl~~~~~~~~p~~~S~~~~~~~l~~~~~~~~g~~~~~~~g~~~~~l~~~l~~~l~~~g~~i~l~~~V~~I~~~~~-- 244 (453)
T TIGR02731 167 VFIAMSKALNFINPDELSMTVVLTALNRFLQERHGSKMAFLDGAPPERLCQPIVDYITSRGGEVRLNSRLKEIVLNED-- 244 (453)
T ss_pred HHHHHHHHHCCCCHHHHHHHHHHHHHHHHHhcCCCCeeEeecCCChHHHHHHHHHHHHhcCCEEeCCCeeEEEEECCC--
Confidence 589999999999999999999999998866656667788888876668999999999999999999999999987653
Q ss_pred CcceEEEEEEEecCCCe-----EEecCEEEEcCChhhHhhhCCCcccCchHHHHhhCCCCCcEEEEEEEecCccchhhhh
Q 026885 81 AETYVKGLAMSKATDKK-----VVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDL 155 (231)
Q Consensus 81 ~~~~v~~v~~~~~~~g~-----~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~ 155 (231)
| ++++|++. +|+ ++.||.||+|+|++.+.+|||.......+.+.+.++++.++++++++|++++.
T Consensus 245 ~--~v~~v~~~---~~~~~~~~~~~a~~VI~a~p~~~~~~lL~~~~~~~~~~~~~~~~~~~~~~~v~l~~~~~~~----- 314 (453)
T TIGR02731 245 G--SVKHFVLA---DGEGQRRFEVTADAYVSAMPVDIFKLLLPQPWKQMPFFQKLNGLEGVPVINVHIWFDRKLT----- 314 (453)
T ss_pred C--CEEEEEEe---cCCCCceeEEECCEEEEcCCHHHHHhhCchhhhcCHHHHHhhcCCCCcEEEEEEEEccccC-----
Confidence 5 78888885 444 78999999999999999999864333456677788888899999999999875
Q ss_pred HHHHHhhhhcCCCcceecCCCCcceeecccCCCCcccccCCCceEEEEEeecCCCCCCCCHHHHHHHHHHHhhcc
Q 026885 156 ERSRQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 156 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~eel~~~~~~~L~~~ 230 (231)
..++|++.+.+......+++.... ++.+++ ++++.++++.++.+.++++||++++++++|+++
T Consensus 315 ----------~~~~~~~~~~~~~~~~~~~s~~~~-~~~~~~-~~l~~~~~~~~~~~~~~~~ee~~~~v~~~L~~~ 377 (453)
T TIGR02731 315 ----------TVDHLLFSRSPLLSVYADMSETCK-EYADPD-KSMLELVFAPAADWIGRSDEEIIDATMAELAKL 377 (453)
T ss_pred ----------CCCceeeeCCCcceeecchhhhCh-hhcCCC-CeEEEEEecChhhhhcCCHHHHHHHHHHHHHHh
Confidence 334566665543333333322111 122333 478888777788899999999999999999875
No 5
>TIGR03467 HpnE squalene-associated FAD-dependent desaturase. The sequences in this family are members of the pfam01593 superfamily of flavin-containing amine oxidases which include the phytoene desaturases. These sequences also include a FAD-dependent oxidoreductase domain, pfam01266. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of squalene, the condensation product of the polyisoprenoid farnesyl pyrophosphate. This gene and its association with hopene biosynthesis in Zymomonas mobilis has been noted in the literature where the gene symbol hpnE was assigned. This gene is also found in contexts where the downstream conversion of squalene to hopenes is not evidence. The precise nature of the reaction catalyzed by this enzyme is unknown at this time.
Probab=99.81 E-value=3.2e-18 Score=153.43 Aligned_cols=196 Identities=20% Similarity=0.254 Sum_probs=145.0
Q ss_pred CchHHHHHcCCCCCCcccHHHHHHHHHH-HHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCC
Q 026885 1 MWDPVAYALGFIDCDNISARCMLTIFAL-FATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAA 79 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~~l~~-~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~ 79 (231)
||+|++.+..+.+|+++|+.+++.+++. +.....+..+.+++|+.++.+.++|++.|++.|++|++|++|++|..++
T Consensus 150 ~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~gG~~~~~~~~l~~~l~~~g~~i~~~~~V~~i~~~~-- 227 (419)
T TIGR03467 150 LWEPLLLSALNTPPERASAALAAKVLRDSFLAGRAASDLLLPRVPLSELFPEPARRWLDSRGGEVRLGTRVRSIEANA-- 227 (419)
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhcCCCcceeeeeCCCHHHHHHHHHHHHHHHcCCEEEcCCeeeEEEEcC--
Confidence 5789999999999999999999988875 5444444568999999887777889999999999999999999999987
Q ss_pred CCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhCCCCCcEEEEEEEecCccchhhhhHHHH
Q 026885 80 NAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSR 159 (231)
Q Consensus 80 ~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~ 159 (231)
+ ++..+.. .+|+.+.||.||+|+|++.+.++++.. ...+.+.++++.++.+++|.|++++..
T Consensus 228 -~--~~~~~~~---~~g~~~~~d~vi~a~p~~~~~~ll~~~----~~~~~l~~~~~~~~~~v~l~~~~~~~~-------- 289 (419)
T TIGR03467 228 -G--GIRALVL---SGGETLPADAVVLAVPPRHAASLLPGE----DLGALLTALGYSPITTVHLRLDRAVRL-------- 289 (419)
T ss_pred -C--cceEEEe---cCCccccCCEEEEcCCHHHHHHhCCCc----hHHHHHhhcCCcceEEEEEEeCCCcCC--------
Confidence 3 3432222 267788999999999999999999862 234567888999999999999997630
Q ss_pred HhhhhcCCCcceecCCCCcceeecccCCCCcccccCCCceEEEEEeecCCCCCCCCHHHHHHHHHHHhhcc
Q 026885 160 QLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~eel~~~~~~~L~~~ 230 (231)
+.+...+...+..+++ +.+. + . + ...++.++++.++.+..+++||+++.++++|+++
T Consensus 290 ------~~~~~~~~~~~~~~~~-~~~~--~---~-~-~~~~~~~~~~~~~~~~~~~~e~~~~~~l~~l~~~ 346 (419)
T TIGR03467 290 ------PAPMVGLVGGLAQWLF-DRGQ--L---A-G-EPGYLAVVISAARDLVDLPREELADRIVAELRRA 346 (419)
T ss_pred ------CCCeeeecCCceeEEE-ECCc--C---C-C-CCCEEEEEEecchhhccCCHHHHHHHHHHHHHHh
Confidence 1111111112211122 1111 0 1 1 1246667777778889999999999999999875
No 6
>PRK07208 hypothetical protein; Provisional
Probab=99.76 E-value=1.6e-16 Score=145.93 Aligned_cols=207 Identities=17% Similarity=0.192 Sum_probs=142.3
Q ss_pred CchHHHHHcCCCCCCcccHHHHHH---------HHHH-HHhc---------cc---cceeeeeCCCCcchhHHHHHHHHH
Q 026885 1 MWDPVAYALGFIDCDNISARCMLT---------IFAL-FATK---------TE---ASLLRMLKGSPDVYLSGPIRKYIT 58 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~---------~l~~-~~~~---------~~---~~~~g~~~g~~~~~l~~~l~~~l~ 58 (231)
||+|++.+..+.+|+++|+.+++. +++. +... .. ...+.+++|+.+ .++++|++.++
T Consensus 151 ~~~p~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~gG~~-~l~~~L~~~l~ 229 (479)
T PRK07208 151 FFKGYTEKVWGVPCDEISADWAAQRIKGLSLGKAIRNALRRSLGLKRRNKEVETSLIEEFRYPKLGPG-QLWETAAEKLE 229 (479)
T ss_pred HHHHhhhhhhCCChHHCCChHHhCcccCCCHHHHHHHHhhhcccccccCCCccccceeEEeCCCCCcc-hHHHHHHHHHH
Confidence 589999999999999999997542 3332 1110 01 135889999987 68999999999
Q ss_pred HCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCChhhHhhhCCCcccCchHHHHhhCCCCC
Q 026885 59 DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGV 136 (231)
Q Consensus 59 ~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~ 136 (231)
+.|++|++|++|++|..+++ + .+..+... +.+|+ .+.||+||+|+|++.+.+++++. ......+.+.++++.
T Consensus 230 ~~g~~i~~~~~V~~I~~~~~--~--~v~~~~~~-~~~g~~~~~~ad~VI~a~p~~~l~~~l~~~-~~~~~~~~~~~l~~~ 303 (479)
T PRK07208 230 ALGGKVVLNAKVVGLHHDGD--G--RIAVVVVN-DTDGTEETVTADQVISSMPLRELVAALDPP-PPPEVRAAAAGLRYR 303 (479)
T ss_pred HcCCEEEeCCEEEEEEEcCC--c--EEEEEEEE-cCCCCEEEEEcCEEEECCCHHHHHHhcCCC-CCHHHHHHHhCCCcc
Confidence 99999999999999999873 3 34444332 22343 68899999999999888887632 222344556788888
Q ss_pred cEEEEEEEecCccchhhhhHHHHHhhhhcCCCcceecCCCCcce--eecccCCCCcccccCCCceEE--EEEeecCCCCC
Q 026885 137 PVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPDADFSC--FADLALTSPEDYYREGQGSLL--QCVLTPGDPYM 212 (231)
Q Consensus 137 ~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~s~~~p~~~~~~~~~~~~--~~~~s~~~~~~ 212 (231)
++++++++++++.. ...+|+|.+++.+.+ ....+..+|. ..|++...++ ++++...+.++
T Consensus 304 ~~~~v~l~~~~~~~---------------~~~~~~~~~~~~~~~~r~~~~~~~~~~-~~p~g~~~~l~~~~~~~~~~~~~ 367 (479)
T PRK07208 304 DFITVGLLVKELNL---------------FPDNWIYIHDPDVKVGRLQNFNNWSPY-LVPDGRDTWLGLEYFCFEGDDLW 367 (479)
T ss_pred eeEEEEEEecCCCC---------------CCCceEEecCCCCccceecccccCCcc-cCCCCCceEEEEEEEccCCCccc
Confidence 99999999998643 223455444332221 1112222342 3444433333 45555667888
Q ss_pred CCCHHHHHHHHHHHhhcc
Q 026885 213 PLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 213 ~~~~eel~~~~~~~L~~~ 230 (231)
.+++||++++++++|+++
T Consensus 368 ~~~deel~~~~~~~L~~l 385 (479)
T PRK07208 368 NMSDEDLIALAIQELARL 385 (479)
T ss_pred cCCHHHHHHHHHHHHHHc
Confidence 999999999999999875
No 7
>PRK07233 hypothetical protein; Provisional
Probab=99.75 E-value=1.2e-16 Score=144.09 Aligned_cols=201 Identities=18% Similarity=0.223 Sum_probs=143.5
Q ss_pred CchHHHHHcCCCCCCcccHHHHHHHHHHHHhc-c--ccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEecc
Q 026885 1 MWDPVAYALGFIDCDNISARCMLTIFALFATK-T--EASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDK 77 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~~l~~~~~~-~--~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~ 77 (231)
||+|++....+.+++++|+.+++..+...... . ....+++++|+.. .++++|++.+++.|++|++|++|++|+.++
T Consensus 150 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~l~~~l~~~l~~~g~~v~~~~~V~~i~~~~ 228 (434)
T PRK07233 150 FWEPLLESKFGDYADDVSAAWLWSRIKRRGNRRYSLFGEKLGYLEGGFA-TLIDALAEAIEARGGEIRLGTPVTSVVIDG 228 (434)
T ss_pred HHHHHHhcccCCCccccCHHHHHHHHhhhhccccccCCceEeccCCCHH-HHHHHHHHHHHhcCceEEeCCCeeEEEEcC
Confidence 58999999999999999999987766643211 1 1235889999975 699999999999999999999999999876
Q ss_pred CCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhCCCCCcEEEEEEEecCccchhhhhHH
Q 026885 78 AANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLER 157 (231)
Q Consensus 78 ~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~ 157 (231)
+ +++.+.. ++++++||.||+|+|++.+.++++... ....+.+.++.+.+++++++++++++.
T Consensus 229 ---~--~~~~~~~----~~~~~~ad~vI~a~p~~~~~~ll~~~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~------- 290 (434)
T PRK07233 229 ---G--GVTGVEV----DGEEEDFDAVISTAPPPILARLVPDLP--ADVLARLRRIDYQGVVCMVLKLRRPLT------- 290 (434)
T ss_pred ---C--ceEEEEe----CCceEECCEEEECCCHHHHHhhcCCCc--HHHHhhhcccCccceEEEEEEecCCCC-------
Confidence 4 5655543 677899999999999999989987532 233456778889999999999999765
Q ss_pred HHHhhhhcCCCcceecCCC--CcceeecccCCCCcccccCCCceE-EEEEeecCCCCCCCCHHHHHHHHHHHhhcc
Q 026885 158 SRQLRRALGLDNLLYTPDA--DFSCFADLALTSPEDYYREGQGSL-LQCVLTPGDPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 158 ~~~l~~~~~~~~~~~~~~~--~~~~~~~~s~~~p~~~~~~~~~~~-~~~~~s~~~~~~~~~~eel~~~~~~~L~~~ 230 (231)
. ..|.+..++ .+..+...+..+|. ..+++...+ +.+++.+.++.+.++++|++++++++|.++
T Consensus 291 --------~-~~~~~~~~~~~~~~~~~~~s~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~ 356 (434)
T PRK07233 291 --------D-YYWLNINDPGAPFGGVIEHTNLVPP-ERYGGEHLVYLPKYLPGDHPLWQMSDEELLDRFLSYLRKM 356 (434)
T ss_pred --------C-CceeeecCCCCCcceEEEecccCCc-cccCCceEEEEeeecCCCChhhcCCHHHHHHHHHHHHHHh
Confidence 1 223322121 12222223333342 222332222 345555556677889999999999999875
No 8
>COG3349 Uncharacterized conserved protein [Function unknown]
Probab=99.70 E-value=5.7e-17 Score=146.43 Aligned_cols=220 Identities=41% Similarity=0.654 Sum_probs=178.4
Q ss_pred CchHHHHHcCCCCCCcccHHHHHHHHHHHHhcc-ccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCC
Q 026885 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKT-EASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAA 79 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~~l~~~~~~~-~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~ 79 (231)
.|.|++++.+|.+|+++||+.+.+++..|.... +++...+++|+..|.+..++.+++.++|++++++.+|++|..+..
T Consensus 168 ~~~~~~~~l~f~~~e~~sa~~~lt~~~~~~~~~~~~~i~~~~~g~~~E~~~~p~~~yi~~~G~~v~~~~pv~~l~l~~~- 246 (485)
T COG3349 168 AFAPIALALTFIDPEGCSARFFLTILNLFLIVTLEASILRNLRGSPDEVLLQPWTEYIPERGRKVHADYPVKELDLDGA- 246 (485)
T ss_pred HHHHHHHhhcccCcccCcchhHHHHHHHHHHhccCcchhhhhcCCCcceeeehhhhhccccCceeeccceeeeeecccc-
Confidence 489999999999999999999999999877655 788999999999999999999999999999999999999999763
Q ss_pred CCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhCCCCCcEEEEEEEecCccchhhhhHHHH
Q 026885 80 NAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSR 159 (231)
Q Consensus 80 ~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~ 159 (231)
++..+++|+.+. ...-+...++.|+.+..++.+.+.+|..|.....++++..+...|+++++|++++++...-..+ .
T Consensus 247 ~~~~~~~g~~~~-~~~~e~~~~~~~~~~~~v~~~~~~~ps~W~~~~~f~~ly~l~~~p~~~~~l~~~~~~~~~~~~~--~ 323 (485)
T COG3349 247 RGLAKVTGGDVT-GPEQEQQAALAVVDAFAVQRFKRDLPSEWPKWSNFDGLYGLRLVPVITLHLRFDGWVTELTDRN--Q 323 (485)
T ss_pred ccccceEeeeec-CcceEeeehhhhhcccccchHhhcCcccccccccccccccccccceeEEEEeecCccccccccc--h
Confidence 222367888763 1122345678889999999999999998877777889999999999999999998765332222 1
Q ss_pred HhhhhcCCCcceecCCCCcceeecccCCCCcccccCCCceEEEEEeecCCCCCCCCHHHHHHHHHHHhhc
Q 026885 160 QLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMPLPNDEIIRRVAKQVGS 229 (231)
Q Consensus 160 ~l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~s~~~~~~~~~~eel~~~~~~~L~~ 229 (231)
+. .++|..+..++..+++.+...+++ .++.++.+..++.++.++.++...+++++...+.+++..
T Consensus 324 ~~----~~dn~~~s~~~l~~~~ad~~~~~~-~y~e~g~~~~le~~~~~~~~~~~~~~~~~~a~~e~~~~~ 388 (485)
T COG3349 324 QF----GIDNLLWSDDTLGGVVADLALTSP-DYVEPGAGCYLEKVLAPGWPFLFESDEAIVATFEKELYE 388 (485)
T ss_pred hh----hhhccccccccCCceeeeccccch-hhccccchhhhhhhhcccccccccchhhHHHHHHHHhhh
Confidence 10 245555566666777888777776 466666667889999999999999999999999988864
No 9
>COG1232 HemY Protoporphyrinogen oxidase [Coenzyme metabolism]
Probab=99.64 E-value=7.1e-15 Score=132.86 Aligned_cols=198 Identities=19% Similarity=0.185 Sum_probs=138.9
Q ss_pred CchHHHHHcCCCCCCcccHHHHHHHHHHHHhccc-----------------cceeeeeCCCCcchhHHHHHHHHHHCCcE
Q 026885 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTE-----------------ASLLRMLKGSPDVYLSGPIRKYITDKGGR 63 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~~l~~~~~~~~-----------------~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~ 63 (231)
||+||+-+....+++++||+.....+.+..+... ...+++++|+++ +|++++++.++..
T Consensus 153 ~~~pll~giy~~~~~~LS~~~~~p~~~~~e~~~~s~~~g~~~~~~~~~~~~~~~~~~~~gG~~-~l~~al~~~l~~~--- 228 (444)
T COG1232 153 FIEPLLEGIYAGDADKLSAAAAFPILARAERKYGSLLRGAKKEGLPKQSLKKEKFGYLRGGLQ-SLIEALAEKLEAK--- 228 (444)
T ss_pred HHHHHhhchhcCCHHHhhHHHhcchhhhhhhhhcchhhhhhhccCcccccccccccccCccHH-HHHHHHHHHhhhc---
Confidence 5789999999999999999955444443221111 125899999997 6999999999988
Q ss_pred EEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhCCCCCcEEEEEE
Q 026885 64 FHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQL 143 (231)
Q Consensus 64 i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L 143 (231)
|++|++|++|..+.. + .+++.. +|+.++||.||+|+|++.+.+++++. +..+...++.+.+++||.+
T Consensus 229 i~~~~~V~~i~~~~~--~----~~~~~~---~g~~~~~D~VI~t~p~~~l~~ll~~~----~~~~~~~~~~~~s~~~vv~ 295 (444)
T COG1232 229 IRTGTEVTKIDKKGA--G----KTIVDV---GGEKITADGVISTAPLPELARLLGDE----AVSKAAKELQYTSVVTVVV 295 (444)
T ss_pred eeecceeeEEEEcCC--c----cEEEEc---CCceEEcceEEEcCCHHHHHHHcCCc----chhhhhhhccccceEEEEE
Confidence 999999999999852 3 445453 78889999999999999999999872 3345567788889999999
Q ss_pred EecCccchhhhhHHHHHhhhhcCCC-cceecCCCCcceeecc--cCCCCcccccCCCceEEEEEee--cCCCCCCCCHHH
Q 026885 144 RYNGWVTELQDLERSRQLRRALGLD-NLLYTPDADFSCFADL--ALTSPEDYYREGQGSLLQCVLT--PGDPYMPLPNDE 218 (231)
Q Consensus 144 ~~d~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~~~~~~~--s~~~p~~~~~~~~~~~~~~~~s--~~~~~~~~~~ee 218 (231)
.++.+-.. . .++ .|++..+....+.++. |..-|. ..|.| .+++.+.+. ..+....++|||
T Consensus 296 ~~~~~~~~---------~----~~~~~g~~iad~~~~~~a~~~~S~~~p~-~~p~g-~~ll~~~~~~~g~~~~~~~~dee 360 (444)
T COG1232 296 GLDEKDNP---------A----LPDGYGLLIADDDPYILAITFHSNKWPH-EAPEG-KTLLRVEFGGPGDESVSTMSDEE 360 (444)
T ss_pred Eecccccc---------C----CCCceEEEEecCCCcceeEEEecccCCC-CCCCC-cEEEEEEeecCCCcchhccCHHH
Confidence 99985210 0 223 3555544422132222 222221 12222 456655554 334677889999
Q ss_pred HHHHHHHHhhcc
Q 026885 219 IIRRVAKQVGSV 230 (231)
Q Consensus 219 l~~~~~~~L~~~ 230 (231)
+++.++++|.++
T Consensus 361 ~~~~~l~~L~~~ 372 (444)
T COG1232 361 LVAAVLDDLKKL 372 (444)
T ss_pred HHHHHHHHHHHH
Confidence 999999999875
No 10
>PRK12416 protoporphyrinogen oxidase; Provisional
Probab=99.58 E-value=1.1e-13 Score=126.58 Aligned_cols=199 Identities=13% Similarity=0.126 Sum_probs=131.2
Q ss_pred CchHHHHHcCCCCCCcccHHHHHHHHHHHHh-----------------ccccceeeeeCCCCcchhHHHHHHHHHHCCcE
Q 026885 1 MWDPVAYALGFIDCDNISARCMLTIFALFAT-----------------KTEASLLRMLKGSPDVYLSGPIRKYITDKGGR 63 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~~l~~~~~-----------------~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~ 63 (231)
+|+|++.+.++.+++++|++..+..|....+ ......+.+++||++ .|+++|++.+++ ++
T Consensus 164 ~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~l~~~l~~~l~~--~~ 240 (463)
T PRK12416 164 QIAPVLSGVYSGKLNELTMASTLPYLLDYKNKYGSIIKGFEENKKQFQSAGNKKFVSFKGGLS-TIIDRLEEVLTE--TV 240 (463)
T ss_pred HHHHHhcccccCCcccccHHHhhHHHHHHHHhcCcHHHHHHHhhhccCCCCCCceEeeCCCHH-HHHHHHHHhccc--cc
Confidence 5899999999999999999875544321110 011234677899986 689999999865 78
Q ss_pred EEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhCCCCCcEEEEEE
Q 026885 64 FHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQL 143 (231)
Q Consensus 64 i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L 143 (231)
|++|++|++|+.++ + + +.|.+. +|+.+.||+||+|+|++.+.+|+++. +....+.++++.++.++++
T Consensus 241 i~~~~~V~~I~~~~---~--~-~~v~~~---~g~~~~ad~VI~a~p~~~~~~ll~~~----~l~~~~~~~~~~~~~~v~l 307 (463)
T PRK12416 241 VKKGAVTTAVSKQG---D--R-YEISFA---NHESIQADYVVLAAPHDIAETLLQSN----ELNEQFHTFKNSSLISIYL 307 (463)
T ss_pred EEcCCEEEEEEEcC---C--E-EEEEEC---CCCEEEeCEEEECCCHHHHHhhcCCc----chhHHHhcCCCCceEEEEE
Confidence 99999999999886 3 3 345543 67788999999999999999988752 2234567888899999999
Q ss_pred EecCccchhhhhHHHHHhhhhcCCCc--ceecCCCCcceeecc--cCCCCcccccCCCceEEEEEee----cCCCCCCCC
Q 026885 144 RYNGWVTELQDLERSRQLRRALGLDN--LLYTPDADFSCFADL--ALTSPEDYYREGQGSLLQCVLT----PGDPYMPLP 215 (231)
Q Consensus 144 ~~d~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~~~~--s~~~p~~~~~~~~~~~~~~~~s----~~~~~~~~~ 215 (231)
.|+++... + +.+. ++..+.....+..+. +..-| ..+++...++.+++. .++.+..++
T Consensus 308 ~~~~~~~~---------~----~~~g~G~l~~~~~~~~~~~~~~~s~~~~--~~~~~~~~l~~~~~~~~~~~~~~~~~~~ 372 (463)
T PRK12416 308 GFDILDEQ---------L----PADGTGFIVTENSDLHCDACTWTSRKWK--HTSGKQKLLVRMFYKSTNPVYETIKNYS 372 (463)
T ss_pred EechhhcC---------C----CCCceEEEeeCCCCCeEEEEEeecCCCC--CcCCCCeEEEEEEeCCCCCCchhhhcCC
Confidence 99975320 0 1111 222222222111111 10001 011222345555552 234577889
Q ss_pred HHHHHHHHHHHhhcc
Q 026885 216 NDEIIRRVAKQVGSV 230 (231)
Q Consensus 216 ~eel~~~~~~~L~~~ 230 (231)
+||+.+.++++|+++
T Consensus 373 dee~~~~~~~~L~~~ 387 (463)
T PRK12416 373 EEELVRVALYDIEKS 387 (463)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
No 11
>PRK11883 protoporphyrinogen oxidase; Reviewed
Probab=99.54 E-value=3.4e-13 Score=122.46 Aligned_cols=200 Identities=20% Similarity=0.241 Sum_probs=131.7
Q ss_pred CchHHHHHcCCCCCCcccHHHHHHHHHHHHh---------------c--cccceeeeeCCCCcchhHHHHHHHHHHCCcE
Q 026885 1 MWDPVAYALGFIDCDNISARCMLTIFALFAT---------------K--TEASLLRMLKGSPDVYLSGPIRKYITDKGGR 63 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~~l~~~~~---------------~--~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~ 63 (231)
+|+|++.+..+.+++++|+.+++..+..+.. . ..+.....++|+++ .+++.+.+.+.+. +
T Consensus 159 ~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~-~l~~~l~~~l~~~--~ 235 (451)
T PRK11883 159 LIEPLLSGIYAGDIDTLSLRATFPQLAQAEDKYGSLLRGMRKALPKEKKKTKGVFGTLKGGLQ-SLIEALEEKLPAG--T 235 (451)
T ss_pred HHHHhhceeecCChHHccHHHhHHHHHHHHHhcCcHHHHHHhhccccCCCCCCceEeeccHHH-HHHHHHHHhCcCC--e
Confidence 5899999999999999999986654432110 0 11234566788886 6888888887654 8
Q ss_pred EEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhCCCCCcEEEEEE
Q 026885 64 FHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQL 143 (231)
Q Consensus 64 i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L 143 (231)
|++|++|++|..++ + . ..|.+. +|+++.||+||+|+|++.+.+++... +..+.+.++++.++.++++
T Consensus 236 i~~~~~V~~i~~~~---~--~-~~v~~~---~g~~~~~d~vI~a~p~~~~~~l~~~~----~~~~~~~~~~~~~~~~v~l 302 (451)
T PRK11883 236 IHKGTPVTKIDKSG---D--G-YEIVLS---NGGEIEADAVIVAVPHPVLPSLFVAP----PAFALFKTIPSTSVATVAL 302 (451)
T ss_pred EEeCCEEEEEEEcC---C--e-EEEEEC---CCCEEEcCEEEECCCHHHHHHhccCh----hHHHHHhCCCCCceEEEEE
Confidence 99999999999876 3 2 345553 78889999999999999998887642 2345678889999999999
Q ss_pred EecCccchhhhhHHHHHhhhhcCCCcceecCCCCcceee--cccCCCCcccccCCCceEEEEEee-cC-CCCCCCCHHHH
Q 026885 144 RYNGWVTELQDLERSRQLRRALGLDNLLYTPDADFSCFA--DLALTSPEDYYREGQGSLLQCVLT-PG-DPYMPLPNDEI 219 (231)
Q Consensus 144 ~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~s~~~p~~~~~~~~~~~~~~~~s-~~-~~~~~~~~eel 219 (231)
.|++++... . ...++++..+....+.. ..+...|. ..|.+ ..++..+.. ++ +...+++++|+
T Consensus 303 ~~~~~~~~~---~---------~~~~~~~~~~~~~~~~~~~~~s~~~~~-~~p~g-~~~~~~~~~~~~~~~~~~~~~~~~ 368 (451)
T PRK11883 303 AFPESATNL---P---------DGTGFLVARNSDYTITACTWTSKKWPH-TTPEG-KVLLRLYVGRPGDEAVVDATDEEL 368 (451)
T ss_pred EeccccCCC---C---------CceEEEecCCCCCcEEEEEeEcCcCCC-CCCCC-cEEEEEecCCCCCchhccCCHHHH
Confidence 999864200 0 11123333222222211 11222231 23333 344444332 32 34678899999
Q ss_pred HHHHHHHhhcc
Q 026885 220 IRRVAKQVGSV 230 (231)
Q Consensus 220 ~~~~~~~L~~~ 230 (231)
++.++++|+++
T Consensus 369 ~~~~~~~L~~~ 379 (451)
T PRK11883 369 VAFVLADLSKV 379 (451)
T ss_pred HHHHHHHHHHH
Confidence 99999999875
No 12
>TIGR02733 desat_CrtD C-3',4' desaturase CrtD. Members of this family are slr1293, a carotenoid biosynthesis protein which was shown to be the C-3',4' desaturase (CrtD) of myxoxanthophyll biosynthesis in Synechocystis sp. strain PCC 6803, and close homologs (presumed to be functionally equivalent) from other cyanobacteria, where myxoxanthophyll biosynthesis is either known or expected. This enzyme can act on neurosporene and so presumably catalyzes the first step that is committed to myxoxanthophyll.
Probab=99.54 E-value=5.1e-13 Score=123.24 Aligned_cols=197 Identities=15% Similarity=0.111 Sum_probs=121.4
Q ss_pred CCCCCcccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEE
Q 026885 11 FIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAM 90 (231)
Q Consensus 11 ~~~~~~~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~ 90 (231)
..+|+++|+...+.++... .... -..+++|+.. .|+++|++.++++||+|++|++|++|..++ + ++.+|++
T Consensus 200 ~~~~~~~~~~~~~~~~~~~-~~~~--G~~~~~GG~~-~l~~aL~~~~~~~G~~i~~~~~V~~I~~~~---~--~~~gv~~ 270 (492)
T TIGR02733 200 QEDADETAALYGATVLQMA-QAPH--GLWHLHGSMQ-TLSDRLVEALKRDGGNLLTGQRVTAIHTKG---G--RAGWVVV 270 (492)
T ss_pred cCChhhhhHHHHHHHhhcc-ccCC--CceeecCcHH-HHHHHHHHHHHhcCCEEeCCceEEEEEEeC---C--eEEEEEE
Confidence 3456677766644333321 1111 2456889986 699999999999999999999999999987 4 6778877
Q ss_pred EecCC--CeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhCCCCCc-EEEEEEEecCccchhhhhHHHHHhhhhcCC
Q 026885 91 SKATD--KKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVP-VVTVQLRYNGWVTELQDLERSRQLRRALGL 167 (231)
Q Consensus 91 ~~~~~--g~~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~-i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~ 167 (231)
.++.. ++.+.||.||+|+|++.+.+|+++...+..+.+.+.++++.+ .+++++.+++...++... ..
T Consensus 271 ~~~~~~~~~~~~ad~VI~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~s~~~~~v~l~~~~~~~~~~~~----------~~ 340 (492)
T TIGR02733 271 VDSRKQEDLNVKADDVVANLPPQSLLELLGPLGLPPGYRKRLKKLPEPSGAFVFYLGVKRAALPVDCP----------PH 340 (492)
T ss_pred ecCCCCceEEEECCEEEECCCHHHHHHhcCcccCCHHHHHHHhcCCCCCceEEEEEeecccccCCCCC----------cc
Confidence 52111 267899999999999988889875333334556677787665 558899998743211000 00
Q ss_pred CcceecCCCCcceeecccCCCCcccccCCCceEEEEEeecCCCCCC-------CCHHHHHHHHHHHhhc
Q 026885 168 DNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTPGDPYMP-------LPNDEIIRRVAKQVGS 229 (231)
Q Consensus 168 ~~~~~~~~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~s~~~~~~~-------~~~eel~~~~~~~L~~ 229 (231)
..+.+... .++|.+.+..+|. .+|+|+..+...+..+..+|.. .-++++++++++.|.+
T Consensus 341 ~~~~~~~~--~~~~v~~~~~d~~-~aP~G~~~l~~~~~~~~~~~~~~~~~~y~~~k~~~~~~il~~le~ 406 (492)
T TIGR02733 341 LQFLSDHQ--GSLFVSISQEGDG-RAPQGEATLIASSFTDTNDWSSLDEEDYTAKKKQYTQTIIERLGH 406 (492)
T ss_pred eeeccCCC--ceEEEEeCCcccc-CCCCCceEEEEEcCCCHHHHcCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 11223322 2556655545663 5776643332222223333222 1245577777777754
No 13
>TIGR00562 proto_IX_ox protoporphyrinogen oxidase. This protein is a flavoprotein and has a beta-alpha-beta dinucleotide binding motif near the amino end.
Probab=99.51 E-value=1.3e-12 Score=119.21 Aligned_cols=200 Identities=16% Similarity=0.207 Sum_probs=130.5
Q ss_pred CchHHHHHcCCCCCCcccHHHHHHHHHHHH----------hc----cc-----------cceeeeeCCCCcchhHHHHHH
Q 026885 1 MWDPVAYALGFIDCDNISARCMLTIFALFA----------TK----TE-----------ASLLRMLKGSPDVYLSGPIRK 55 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~~l~~~~----------~~----~~-----------~~~~g~~~g~~~~~l~~~l~~ 55 (231)
||+|++.+..+.+++++|+.+++..+.... .. .. +..+..+.|+++ +|++.+++
T Consensus 155 ~~~p~~~~~~~~~~~~ls~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~l~~~l~~ 233 (462)
T TIGR00562 155 LIEPLLSGIYAGDPSKLSLKSTFPKFYQTEQKHGSLILGMKKTRNLPQGSGLQLTAKKQGQDFQTLATGLE-TLPEEIEK 233 (462)
T ss_pred HHHHHhcccccCCHHHhhHHHHhHHHHHHHHhcCcHHHHHHhhcccCccccccccccccCCceEecchhHH-HHHHHHHH
Confidence 588999999999999999998765442110 00 00 111333566664 68888888
Q ss_pred HHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhCCCC
Q 026885 56 YITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVG 135 (231)
Q Consensus 56 ~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~ 135 (231)
.+. .++|++|++|++|..+++ + +.|.+. +|+++.||+||+|+|++.+.+++++. .....+.+.++++
T Consensus 234 ~l~--~~~i~~~~~V~~I~~~~~--~----~~v~~~---~g~~~~ad~VI~t~P~~~~~~ll~~~--~~~~~~~l~~l~~ 300 (462)
T TIGR00562 234 RLK--LTKVYKGTKVTKLSHRGS--N----YTLELD---NGVTVETDSVVVTAPHKAAAGLLSEL--SNSASSHLDKIHS 300 (462)
T ss_pred Hhc--cCeEEcCCeEEEEEecCC--c----EEEEEC---CCcEEEcCEEEECCCHHHHHHHhccc--CHHHHHHHhcCCC
Confidence 875 278999999999998762 2 345442 67789999999999999999999763 2244567889999
Q ss_pred CcEEEEEEEecCccchhhhhHHHHHhhhhcCCCccee--cCCCCc---ceeecccCCCCcccccCCCceEEEEEee--cC
Q 026885 136 VPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLY--TPDADF---SCFADLALTSPEDYYREGQGSLLQCVLT--PG 208 (231)
Q Consensus 136 ~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~---~~~~~~s~~~p~~~~~~~~~~~~~~~~s--~~ 208 (231)
.++.++.+.|+++... . ....+.+ ...... .+..+ +...|. ..+.+ .+++.+++. .+
T Consensus 301 ~~~~~v~l~~~~~~~~-----------~--~~~~~g~l~~~~~~~~~~~~i~~-s~~~p~-~~p~g-~~~l~~~~~g~~~ 364 (462)
T TIGR00562 301 PPVANVNLGFPEGSVD-----------G--ELEGFGFLISRSSKFAILGCIFT-SKLFPN-RAPPG-KTLLTAYIGGATD 364 (462)
T ss_pred CceEEEEEEEchHHcC-----------C--CCCceEEEccCCCCCceEEEEEE-ccccCC-cCCCC-cEEEEEEeCCCCC
Confidence 9999999999875320 0 1122211 111111 11111 111231 23333 345555554 34
Q ss_pred CCCCCCCHHHHHHHHHHHhhcc
Q 026885 209 DPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 209 ~~~~~~~~eel~~~~~~~L~~~ 230 (231)
+.+.++++||+++.++++|+++
T Consensus 365 ~~~~~~~~ee~~~~v~~~L~~~ 386 (462)
T TIGR00562 365 ESIVDLSENEIINIVLRDLKKV 386 (462)
T ss_pred ccccCCCHHHHHHHHHHHHHHH
Confidence 5788899999999999999875
No 14
>PLN02576 protoporphyrinogen oxidase
Probab=99.45 E-value=6.3e-12 Score=115.96 Aligned_cols=209 Identities=14% Similarity=0.175 Sum_probs=129.7
Q ss_pred CchHHHHHcCCCCCCcccHHHHHHHHHH---------------HHhc---------------cccceeeeeCCCCcchhH
Q 026885 1 MWDPVAYALGFIDCDNISARCMLTIFAL---------------FATK---------------TEASLLRMLKGSPDVYLS 50 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~~l~~---------------~~~~---------------~~~~~~g~~~g~~~~~l~ 50 (231)
||+|++.+.++.+++++|+.+++..+.. +... ..+.....++||++ .|+
T Consensus 164 ~~~p~~~~~~~~~~~~lS~~~~~~~~~~~e~~~gs~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gG~~-~L~ 242 (496)
T PLN02576 164 LIDPFVSGVYAGDPSSLSMKAAFPKLWNLEKRGGSIIGGAIKAIQEAKKNPKPEPRDPRLPKPKGQTVGSFRGGLQ-TLP 242 (496)
T ss_pred HHHHHhCceecCCHHHHhHHHHhHHHHHHHHhcCcHHHHHHHhhhhhcccccccccccccccccCCeeEeccchHH-HHH
Confidence 5899999999999999999986554321 1100 01123455677776 688
Q ss_pred HHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC-eEEecCEEEEcCChhhHhhhCCCcccCchHHH
Q 026885 51 GPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVPGIKRLLPSSWREMKFFN 128 (231)
Q Consensus 51 ~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g-~~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~ 128 (231)
++|++.+ | ++|++|++|++|+.++ + +.+.|.+. ..+| +.+.||+||+|+|++.+.++++.. .....+
T Consensus 243 ~~la~~l---~~~~i~l~~~V~~I~~~~---~--~~~~v~~~-~~~g~~~~~ad~VI~a~P~~~l~~ll~~~--~~~~~~ 311 (496)
T PLN02576 243 DALAKRL---GKDKVKLNWKVLSLSKND---D--GGYSLTYD-TPEGKVNVTAKAVVMTAPLYVVSEMLRPK--SPAAAD 311 (496)
T ss_pred HHHHHhh---CcCcEEcCCEEEEEEECC---C--CcEEEEEe-cCCCceeEEeCEEEECCCHHHHHHHhccc--CHHHHH
Confidence 8888776 4 6899999999999876 3 21344443 1244 468999999999999999998753 223456
Q ss_pred HhhCCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCc--ceecCCCCccee--ecccCCCCcccccCCCceEEEEE
Q 026885 129 NIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDN--LLYTPDADFSCF--ADLALTSPEDYYREGQGSLLQCV 204 (231)
Q Consensus 129 ~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~--~~~~~~~~~~~~--~~~s~~~p~~~~~~~~~~~~~~~ 204 (231)
.+.++++.++.+|+++|+++....... ... +... ++..+....... ...+...|. ..+++ ..++..+
T Consensus 312 ~l~~~~~~~~~~v~l~~~~~~~~~~~~-----~~~--~~~~~g~l~~~~~~~~~lg~~~~s~~~p~-~~~~~-~~~l~~~ 382 (496)
T PLN02576 312 ALPEFYYPPVAAVTTSYPKEAVKRERL-----IDG--PLEGFGQLHPRKQGVKTLGTIYSSSLFPD-RAPEG-RVLLLNY 382 (496)
T ss_pred HhccCCCCceEEEEEEEchHHcccccc-----cCC--CCCceEEEccCCCCCceEEEEeecCcCCC-CCCCC-CEEEEEE
Confidence 678899999999999999854210000 000 0111 111111111110 001112231 22222 2344445
Q ss_pred eec--CCCCCCCCHHHHHHHHHHHhhcc
Q 026885 205 LTP--GDPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 205 ~s~--~~~~~~~~~eel~~~~~~~L~~~ 230 (231)
+.. ++.+.++++||+++.++++|+++
T Consensus 383 ~~~~~~~~~~~~s~ee~~~~~~~~L~~~ 410 (496)
T PLN02576 383 IGGSRNTGIASASEEELVEAVDRDLRKL 410 (496)
T ss_pred ECCCCCcccccCCHHHHHHHHHHHHHHH
Confidence 542 35788899999999999999875
No 15
>TIGR02730 carot_isom carotene isomerase. Members of this family, including sll0033 (crtH) of Synechocystis sp. PCC 6803, catalyze a cis-trans isomerization of carotenes to the all-trans lycopene, a reaction that can also occur non-enzymatically in light through photoisomerization.
Probab=99.38 E-value=1.8e-11 Score=113.14 Aligned_cols=192 Identities=14% Similarity=0.172 Sum_probs=120.6
Q ss_pred CCCcccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe
Q 026885 13 DCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK 92 (231)
Q Consensus 13 ~~~~~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~ 92 (231)
++.+.++...+.++.. .....+.++.|+.. .++++|++.++++||+|+++++|++|..++ + ++.+|++.
T Consensus 200 p~~~~p~~~~~~~~~~----~~~~g~~~~~gG~~-~l~~~L~~~~~~~G~~i~~~~~V~~I~~~~---~--~~~gv~~~- 268 (493)
T TIGR02730 200 PADQTPMINAGMVFSD----RHYGGINYPKGGVG-QIAESLVKGLEKHGGQIRYRARVTKIILEN---G--KAVGVKLA- 268 (493)
T ss_pred CcccchhhhHHHhhcc----cccceEecCCChHH-HHHHHHHHHHHHCCCEEEeCCeeeEEEecC---C--cEEEEEeC-
Confidence 4466666554433321 11124567888885 699999999999999999999999999986 5 78899885
Q ss_pred cCCCeEEecCEEEEcCChh-hHhhhCCCcccCchHHHHhhCCC-CCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCcc
Q 026885 93 ATDKKVVQADAYVAACDVP-GIKRLLPSSWREMKFFNNIYALV-GVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNL 170 (231)
Q Consensus 93 ~~~g~~~~aD~vV~a~p~~-~~~~Ll~~~~~~~~~~~~~~~l~-~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~ 170 (231)
+|++++||.||+|++++ .+.+|+++...+..+...+++++ ..+.+++++.++++..+... ..++.
T Consensus 269 --~g~~~~ad~vV~a~~~~~~~~~Ll~~~~~~~~~~~~~~~~~~s~s~~~~~l~l~~~~~p~~~-----------~~~~~ 335 (493)
T TIGR02730 269 --DGEKIYAKRIVSNATRWDTFGKLLKAENLPKKEKNWQRNYVKSPSFLSLHLGVKADVLPPGT-----------ECHHI 335 (493)
T ss_pred --CCCEEEcCEEEECCChHHHHHHhCCccccchhhHHHHhhccCCCceEEEEEEecCccCCCCC-----------CccEE
Confidence 78889999999999875 56678886533323333445555 34689999999985431100 00111
Q ss_pred ee-----cCCCCcceeecc-cCCCCcccccCCCceEEEEEee-cCCCCCC-------CCHHHHHHHHHHHhhcc
Q 026885 171 LY-----TPDADFSCFADL-ALTSPEDYYREGQGSLLQCVLT-PGDPYMP-------LPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 171 ~~-----~~~~~~~~~~~~-s~~~p~~~~~~~~~~~~~~~~s-~~~~~~~-------~~~eel~~~~~~~L~~~ 230 (231)
++ ......++|.+. +.+||+ .+|+|+ +.+.+.+. +...|.+ ..++++.+++++.|+++
T Consensus 336 ~~~~~~~~~~~~~~~~v~~ps~~dps-~aP~G~-~~i~~~~~~~~~~w~~~~~~~y~~~k~~~~~~il~~l~~~ 407 (493)
T TIGR02730 336 LLEDWTNLEKPQGTIFVSIPTLLDPS-LAPEGH-HIIHTFTPSSMEDWQGLSPKDYEAKKEADAERIIDRLEKI 407 (493)
T ss_pred ecchhhccCCCCCeEEEEeCCCCCCC-CCcCCc-EEEEEecCCChhhccCCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 11 011223455554 567784 677764 44444332 2222222 23556777888777653
No 16
>TIGR02734 crtI_fam phytoene desaturase. Phytoene is converted to lycopene by desaturation at four (two symmetrical pairs of) sites. This is achieved by two enzymes (crtP and crtQ) in cyanobacteria (Gloeobacter being an exception) and plants, but by a single enzyme in most other bacteria and in fungi. This single enzyme is called the bacterial-type phytoene desaturase, or CrtI. Most members of this family, part of the larger Pfam family pfam01593, which also contains amino oxidases, are CrtI itself; it is likely that all members act on either phytoene or on related compounds such as dehydrosqualene, for carotenoid biosynthesis.
Probab=99.34 E-value=1.3e-10 Score=107.50 Aligned_cols=197 Identities=17% Similarity=0.129 Sum_probs=118.4
Q ss_pred CCCCcccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEE
Q 026885 12 IDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS 91 (231)
Q Consensus 12 ~~~~~~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~ 91 (231)
.+|++.++...+-.+..+ . ....++.|+.. .++++|.+.++++|++|+++++|++|..++ + ++++|++.
T Consensus 190 ~~p~~~~~~~~l~~~~~~---~--~g~~~~~gG~~-~l~~al~~~~~~~G~~i~~~~~V~~i~~~~---~--~~~~V~~~ 258 (502)
T TIGR02734 190 GNPFRTPSIYALISALER---E--WGVWFPRGGTG-ALVAAMAKLAEDLGGELRLNAEVIRIETEG---G--RATAVHLA 258 (502)
T ss_pred cCcccchHHHHHHHHHHh---h--ceEEEcCCCHH-HHHHHHHHHHHHCCCEEEECCeEEEEEeeC---C--EEEEEEEC
Confidence 566677765432211111 1 12346888874 799999999999999999999999999886 5 78888874
Q ss_pred ecCCCeEEecCEEEEcCChhh-HhhhCCCcccCchHHHHhhCCC-CCcEEEEEEEec---Cccchh-----hhhHHHHHh
Q 026885 92 KATDKKVVQADAYVAACDVPG-IKRLLPSSWREMKFFNNIYALV-GVPVVTVQLRYN---GWVTEL-----QDLERSRQL 161 (231)
Q Consensus 92 ~~~~g~~~~aD~vV~a~p~~~-~~~Ll~~~~~~~~~~~~~~~l~-~~~i~~v~L~~d---~~~~~~-----~~~~~~~~l 161 (231)
+|+++.||.||+|+|++. +..|++....+..+.+.+++++ +.+.+++++.++ +++... +........
T Consensus 259 ---~g~~~~ad~VI~a~~~~~~~~~l~~~~~~~~~~~~~~~~~~~s~s~~~~~lgl~~~~~~~~~~~~~~~~~~~~~~~~ 335 (502)
T TIGR02734 259 ---DGERLDADAVVSNADLHHTYRRLLPNHPRRRYPAARLSRKRPSPSLFVLYFGLLGVDGHWPQLAHHTLCFGPRYKEL 335 (502)
T ss_pred ---CCCEEECCEEEECCcHHHHHHHhcCccccccccccccccCCcCCeeeEEEEeeccccCcCCCcCceeEecCcCHHHH
Confidence 788899999999999865 5567776432212234455666 457788899998 333210 000000000
Q ss_pred hhhcCCCcceecC---CCCcceeecc-cCCCCcccccCCCceEEEEEeecCC----CCCCCCHHHHHHHHHHHhhc
Q 026885 162 RRALGLDNLLYTP---DADFSCFADL-ALTSPEDYYREGQGSLLQCVLTPGD----PYMPLPNDEIIRRVAKQVGS 229 (231)
Q Consensus 162 ~~~~~~~~~~~~~---~~~~~~~~~~-s~~~p~~~~~~~~~~~~~~~~s~~~----~~~~~~~eel~~~~~~~L~~ 229 (231)
. ..+ +.. ....++|... +.+||. .+|+|+.++...+..|.+ .-++..++++.+++++.|.+
T Consensus 336 ~-----~~~-~~~g~~~~~p~~~v~~~s~~dp~-~aP~G~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~il~~l~~ 404 (502)
T TIGR02734 336 F-----DEI-FRKGRLAEDPSLYLHRPTVTDPS-LAPPGCENLYVLAPVPHLGTADVDWSVEGPRYRDRILAYLEE 404 (502)
T ss_pred H-----HHH-hcCCCCCCCCcEEEEcCCCCCCC-CCCCCCccEEEEEeCCCCCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 0 000 000 1123455544 677884 677774333222222322 11233467788899888876
No 17
>PF01593 Amino_oxidase: Flavin containing amine oxidoreductase This is a subset of the Pfam family; InterPro: IPR002937 This entry consists of various amine oxidases, including maize polyamine oxidase (PAO) [], L-amino acid oxidases (LAO) and various flavin containing monoamine oxidases (MAO). The aligned region includes the flavin binding site of these enzymes. In vertebrates MAO plays an important role in regulating the intracellular levels of amines via their oxidation; these include various neurotransmitters, neurotoxins and trace amines []. In lower eukaryotes such as aspergillus and in bacteria the main role of amine oxidases is to provide a source of ammonium []. PAOs in plants, bacteria and protozoa oxidise spermidine and spermine to an aminobutyral, diaminopropane and hydrogen peroxide and are involved in the catabolism of polyamines []. Other members of this family include tryptophan 2-monooxygenase, putrescine oxidase, corticosteroid binding proteins and antibacterial glycoproteins.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2Z5U_A ....
Probab=99.13 E-value=6.5e-11 Score=105.10 Aligned_cols=199 Identities=22% Similarity=0.195 Sum_probs=118.6
Q ss_pred chHHHHHcCCCCCCcccHHHHHHHHHHHHhcc-----ccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEec
Q 026885 2 WDPVAYALGFIDCDNISARCMLTIFALFATKT-----EASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYD 76 (231)
Q Consensus 2 w~pl~~a~~~~~~~~~Sa~~~~~~l~~~~~~~-----~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~ 76 (231)
|.++....++..+...|+.+....+..+.... .........| .+...+...++..|++|++|++|++|+.+
T Consensus 163 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g----~~~~~~~~~~~~~g~~i~l~~~V~~I~~~ 238 (450)
T PF01593_consen 163 FRPFFFGAFGFLPDESSAALALLSFPHFDLQDNGGYFPFGGLTVGMG----GLSLALALAAEELGGEIRLNTPVTRIERE 238 (450)
T ss_dssp HHHHHHHHHHHHHCTTTHHHHHHHHHHCHHHHHHHHTTSSTEEEETT----TTHHHHHHHHHHHGGGEESSEEEEEEEEE
T ss_pred HHhhhhhhhccccchhhhhHHHhhhhhcccccccccccccceeeccc----chhHHHHHHHhhcCceeecCCcceecccc
Confidence 44555666666677777774443333322111 0111112222 34667778888889999999999999999
Q ss_pred cCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhh--hCCCcccCchHHHHhhCCCCCcEEEEEEEecCccchhhh
Q 026885 77 KAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR--LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQD 154 (231)
Q Consensus 77 ~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~--Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~ 154 (231)
+ + ++ .|.+. +|++++||+||+|+|+..+.+ +.|..+. ...+.+.++.+.++..++|.|+++...-..
T Consensus 239 ~---~--~v-~v~~~---~g~~~~ad~VI~a~p~~~l~~i~~~p~l~~--~~~~a~~~~~~~~~~~v~l~~~~~~~~~~~ 307 (450)
T PF01593_consen 239 D---G--GV-TVTTE---DGETIEADAVISAVPPSVLKNILLLPPLPE--DKRRAIENLPYSSVSKVFLGFDRPFWPPDI 307 (450)
T ss_dssp S---S--EE-EEEET---TSSEEEESEEEE-S-HHHHHTSEEESTSHH--HHHHHHHTEEEEEEEEEEEEESSGGGGSTT
T ss_pred c---c--cc-ccccc---cceEEecceeeecCchhhhhhhhhcccccc--cccccccccccCcceeEEEeeecccccccc
Confidence 7 4 44 35553 888999999999999999884 5554221 123445777888899999999997651100
Q ss_pred hHHHHHhhhhcCCCcceecCCC-CcceeecccCCCCcccccCCCceEEEEEeecC-CCCCCCCHHHHHHHHHHHhhcc
Q 026885 155 LERSRQLRRALGLDNLLYTPDA-DFSCFADLALTSPEDYYREGQGSLLQCVLTPG-DPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 155 ~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~~s~~~p~~~~~~~~~~~~~~~~s~~-~~~~~~~~eel~~~~~~~L~~~ 230 (231)
....+++.+.. ...++...+...+ + +++..+..++..+. +.+..+++||+++.++++|+++
T Consensus 308 -----------~~~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~~~~~~e~~~~~~~~~L~~~ 370 (450)
T PF01593_consen 308 -----------DFFGILYSDGFSPIGYVSDPSKFPG-R---PGGGVLTSYVGGPDAPEWDDLSDEEILERVLDDLRKI 370 (450)
T ss_dssp -----------TESEEEEESSTSSEEEEEEECCTTS-C---TTSEEEEEEEEHHHHHHHTTSCHHHHHHHHHHHHHHH
T ss_pred -----------cccceecccCccccccccccccCcc-c---ccCCcceeeeeccccchhcccchhhhHHHHHHHhhhc
Confidence 01233333331 1111212121111 1 12234455554443 5778899999999999999875
No 18
>KOG4254 consensus Phytoene desaturase [Coenzyme transport and metabolism]
Probab=99.09 E-value=5.9e-09 Score=93.12 Aligned_cols=85 Identities=16% Similarity=0.159 Sum_probs=75.1
Q ss_pred ccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 32 KTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 32 ~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
..+.+-.+|+.|+.+ .+.+++++.+++.|++|.+++.|++|.+++ | ++.||+++ ||+++.+..||||+.++
T Consensus 250 d~~~g~~~Yp~GG~G-avs~aia~~~~~~GaeI~tka~Vq~Illd~---g--ka~GV~L~---dG~ev~sk~VvSNAt~~ 320 (561)
T KOG4254|consen 250 DGHKGGWGYPRGGMG-AVSFAIAEGAKRAGAEIFTKATVQSILLDS---G--KAVGVRLA---DGTEVRSKIVVSNATPW 320 (561)
T ss_pred cccCCcccCCCCChh-HHHHHHHHHHHhccceeeehhhhhheeccC---C--eEEEEEec---CCcEEEeeeeecCCchH
Confidence 344557899999998 599999999999999999999999999997 6 99999996 99999999999998875
Q ss_pred -hHhhhCCCcccCch
Q 026885 112 -GIKRLLPSSWREMK 125 (231)
Q Consensus 112 -~~~~Ll~~~~~~~~ 125 (231)
++.+|+|.++.+++
T Consensus 321 ~Tf~kLlp~e~LPee 335 (561)
T KOG4254|consen 321 DTFEKLLPGEALPEE 335 (561)
T ss_pred HHHHHhCCCccCCch
Confidence 67799998876555
No 19
>COG1233 Phytoene dehydrogenase and related proteins [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.90 E-value=3.9e-08 Score=90.96 Aligned_cols=74 Identities=23% Similarity=0.273 Sum_probs=62.3
Q ss_pred eeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhh
Q 026885 37 LLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRL 116 (231)
Q Consensus 37 ~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~L 116 (231)
-..+++|+.+ .++++|++.+++.||+|+++++|++|.+++ | |.++++.. +|+.+++|.||+++++.....+
T Consensus 215 G~~~p~GG~~-al~~aL~~~~~~~Gg~I~~~~~V~~I~v~~---g--~g~~~~~~---~g~~~~ad~vv~~~~~~~~~~l 285 (487)
T COG1233 215 GVFYPRGGMG-ALVDALAELAREHGGEIRTGAEVSQILVEG---G--KGVGVRTS---DGENIEADAVVSNADPALLARL 285 (487)
T ss_pred CeeeeeCCHH-HHHHHHHHHHHHcCCEEECCCceEEEEEeC---C--cceEEecc---ccceeccceeEecCchhhhhhh
Confidence 4678999997 799999999999999999999999999998 5 66666653 5678899999999999555556
Q ss_pred CCC
Q 026885 117 LPS 119 (231)
Q Consensus 117 l~~ 119 (231)
.++
T Consensus 286 ~~~ 288 (487)
T COG1233 286 LGE 288 (487)
T ss_pred hhh
Confidence 654
No 20
>PRK13977 myosin-cross-reactive antigen; Provisional
Probab=98.67 E-value=1.7e-07 Score=87.34 Aligned_cols=102 Identities=18% Similarity=0.169 Sum_probs=76.5
Q ss_pred HHcCCCCCCcccHHHHHHHHHHHHh----ccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCc
Q 026885 7 YALGFIDCDNISARCMLTIFALFAT----KTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAE 82 (231)
Q Consensus 7 ~a~~~~~~~~~Sa~~~~~~l~~~~~----~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~ 82 (231)
+..+|...+..||+-|...|++|.. -...+.+.+.+...-+.++.||.++|+++||+|++|++|++|..+.+ ++.
T Consensus 182 w~t~FaF~~whSA~E~rry~~rf~~~~~~l~~~s~l~ft~ynqyeSLV~PL~~~Le~~GV~f~~~t~VtdL~~~~d-~~~ 260 (576)
T PRK13977 182 WRTMFAFEKWHSALEMRRYMHRFIHHIGGLPDLSGLKFTKYNQYESLVLPLIKYLEDHGVDFQYGTKVTDIDFDIT-GGK 260 (576)
T ss_pred HHHHHCCchhhHHHHHHHHHHHHHHhhccCCccccccCCCCCchhHHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC-CCc
Confidence 3444777799999999999998743 34455677777766689999999999999999999999999999621 121
Q ss_pred ceEEEEEEEecCCCeE---EecCEEEEcCC
Q 026885 83 TYVKGLAMSKATDKKV---VQADAYVAACD 109 (231)
Q Consensus 83 ~~v~~v~~~~~~~g~~---~~aD~vV~a~p 109 (231)
++|+||.+...++++. .+.|.||.|..
T Consensus 261 ~~VtgI~~~~~~~~~~I~l~~~DlVivTnG 290 (576)
T PRK13977 261 KTATAIHLTRNGKEETIDLTEDDLVFVTNG 290 (576)
T ss_pred eEEEEEEEEeCCceeEEEecCCCEEEEeCC
Confidence 2899998863223332 35899998765
No 21
>PLN02529 lysine-specific histone demethylase 1
Probab=98.66 E-value=9.1e-07 Score=85.22 Aligned_cols=159 Identities=14% Similarity=0.108 Sum_probs=95.2
Q ss_pred eeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhh-
Q 026885 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRL- 116 (231)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~L- 116 (231)
.....||++ .++++|++ +..|++|++|++|...++ | |++. .+++++.||+||+|+|+..+++.
T Consensus 349 ~~~i~GG~~-~Li~aLA~-----~L~IrLnt~V~~I~~~~d--G------VtV~--t~~~~~~AD~VIVTVPlgVLk~~~ 412 (738)
T PLN02529 349 HCFLAGGNW-RLINALCE-----GVPIFYGKTVDTIKYGND--G------VEVI--AGSQVFQADMVLCTVPLGVLKKRT 412 (738)
T ss_pred eEEECCcHH-HHHHHHHh-----cCCEEcCCceeEEEEcCC--e------EEEE--ECCEEEEcCEEEECCCHHHHHhcc
Confidence 344666765 57777665 446999999999999862 3 3333 15678999999999999998743
Q ss_pred ---CCCcccCchHHHHhhCCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCcceec-CCCCcceeecccCCCCccc
Q 026885 117 ---LPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYT-PDADFSCFADLALTSPEDY 192 (231)
Q Consensus 117 ---l~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~s~~~p~~~ 192 (231)
.|+. +....+.+.++.+-++..|+|.|++++..-. . ..-.++.. ......++..++...+
T Consensus 413 I~F~PpL--P~~K~~AI~rL~yG~v~KV~L~F~~~FW~~~-------~----~~fG~l~~~~~~~g~~~~~~~~~~~--- 476 (738)
T PLN02529 413 IRFEPEL--PRRKLAAIDRLGFGLLNKVAMVFPSVFWGEE-------L----DTFGCLNESSNKRGEFFLFYGYHTV--- 476 (738)
T ss_pred ccCCCCC--CHHHHHHHHcCCCceeEEEEEEeCCccccCC-------C----CceEEEeccCCCCceEEEEecCCCC---
Confidence 2332 2233456889999999999999999753100 0 00011100 0010011111111111
Q ss_pred ccCCCceEEEEEee-cCCCCCCCCHHHHHHHHHHHhhcc
Q 026885 193 YREGQGSLLQCVLT-PGDPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 193 ~~~~~~~~~~~~~s-~~~~~~~~~~eel~~~~~~~L~~~ 230 (231)
.+...++.++.. .+..+..++++++++.++++|+++
T Consensus 477 --~ggpvLvafv~G~~A~~le~lsdeeii~~vl~~L~~i 513 (738)
T PLN02529 477 --SGGPALVALVAGEAAQRFENTDPSTLLHRVLSVLRGI 513 (738)
T ss_pred --CCCCEEEEEECchhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 112234433322 335677889999999999999875
No 22
>PLN03000 amine oxidase
Probab=98.65 E-value=5.7e-07 Score=87.47 Aligned_cols=153 Identities=16% Similarity=0.211 Sum_probs=98.6
Q ss_pred eeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHh----
Q 026885 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIK---- 114 (231)
Q Consensus 39 g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~---- 114 (231)
...+||++ .|+++|++.| .|++|++|++|...++ + +.|+. +++++.||+||+|+|+..++
T Consensus 374 ~~v~GG~~-~LieaLa~~L-----~I~Ln~~Vt~I~~~~d--g----V~V~~----~~~~~~AD~VIvTVPlgVLk~~~I 437 (881)
T PLN03000 374 CFLPGGNG-RLVQALAENV-----PILYEKTVQTIRYGSN--G----VKVIA----GNQVYEGDMVLCTVPLGVLKNGSI 437 (881)
T ss_pred EEeCCCHH-HHHHHHHhhC-----CcccCCcEEEEEECCC--e----EEEEE----CCcEEEeceEEEcCCHHHHhhCce
Confidence 34667876 6888888776 3999999999998862 3 23432 44688999999999999998
Q ss_pred hhCCCcccCchHHHHhhCCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCc--ceecC---CCCcceeecccCCCC
Q 026885 115 RLLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDN--LLYTP---DADFSCFADLALTSP 189 (231)
Q Consensus 115 ~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~--~~~~~---~~~~~~~~~~s~~~p 189 (231)
.+.|+.+ ....+.+.++.+-.+.-|.+.|++++.+- +.+. .+... ...+..+.+
T Consensus 438 ~F~PpLP--~~K~~AI~rL~~G~l~KViL~Fd~~FW~~-------------d~~~FG~l~~~~~~rg~~~~f~s------ 496 (881)
T PLN03000 438 KFVPELP--QRKLDCIKRLGFGLLNKVAMLFPYVFWST-------------DLDTFGHLTEDPNYRGEFFLFYS------ 496 (881)
T ss_pred eeCCCCC--HHHHHHHHcCCCcceEEEEEEeCCccccC-------------CCCceeEEecCCCCCceeEEEeC------
Confidence 4555432 22345688999889999999999975410 1111 11111 111111211
Q ss_pred cccccCCCceEEEEEee--cCCCCCCCCHHHHHHHHHHHhhcc
Q 026885 190 EDYYREGQGSLLQCVLT--PGDPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 190 ~~~~~~~~~~~~~~~~s--~~~~~~~~~~eel~~~~~~~L~~~ 230 (231)
+.+..++.++..++. .++.+..++++|+++.++++|+++
T Consensus 497 --~sp~~G~pVLvafv~Gd~A~~le~lSdeE~ve~vl~~Lrki 537 (881)
T PLN03000 497 --YAPVAGGPLLIALVAGEAAHKFETMPPTDAVTRVLHILRGI 537 (881)
T ss_pred --CCCCCCCcEEEEEecCchhHHhhcCCHHHHHHHHHHHHHHH
Confidence 111112335544444 335677899999999999999875
No 23
>PLN02328 lysine-specific histone demethylase 1 homolog
Probab=98.58 E-value=1.7e-06 Score=83.92 Aligned_cols=156 Identities=15% Similarity=0.162 Sum_probs=98.3
Q ss_pred eeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhh--
Q 026885 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR-- 115 (231)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~-- 115 (231)
.....||++ .|+++|++.+ .|++|++|++|...++ | |.+. .+|+++.||+||+|+|...+++
T Consensus 429 ~~~v~GG~~-~Li~aLa~~L-----~I~ln~~V~~I~~~~d--g------V~V~--~~G~~~~AD~VIvTvPl~vLk~~~ 492 (808)
T PLN02328 429 HCFIPGGND-TFVRELAKDL-----PIFYERTVESIRYGVD--G------VIVY--AGGQEFHGDMVLCTVPLGVLKKGS 492 (808)
T ss_pred EEEECCcHH-HHHHHHHhhC-----CcccCCeeEEEEEcCC--e------EEEE--eCCeEEEcCEEEECCCHHHHhhcc
Confidence 445667875 6888888766 3999999999999762 3 3222 2788899999999999999874
Q ss_pred --hCCCcccCchHHHHhhCCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCcceecCC---CCcceeecccCCCCc
Q 026885 116 --LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPD---ADFSCFADLALTSPE 190 (231)
Q Consensus 116 --Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~~~~~~~s~~~p~ 190 (231)
+.|.. +....+.+.++.+-++.-|.|.|++++.+-. . ..-+++.... +.+..|.+++ .+
T Consensus 493 I~F~P~L--P~~K~~AI~~l~yG~~~KV~L~F~~~FW~~~-------~----d~fG~l~~d~s~rG~~~lf~s~s--~~- 556 (808)
T PLN02328 493 IEFYPEL--PQRKKDAIQRLGYGLLNKVALLFPYNFWGGE-------I----DTFGHLTEDPSMRGEFFLFYSYS--SV- 556 (808)
T ss_pred cccCCCC--CHHHHHHHHcCCCcceEEEEEEeCCccccCC-------C----CceEEEeecCCCCceEEEEecCC--CC-
Confidence 33432 2233456889999999999999998764100 0 0011111111 1111121111 11
Q ss_pred ccccCCCceEEEEEeec--CCCCCCCCHHHHHHHHHHHhhcc
Q 026885 191 DYYREGQGSLLQCVLTP--GDPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 191 ~~~~~~~~~~~~~~~s~--~~~~~~~~~eel~~~~~~~L~~~ 230 (231)
.+ +.++..++.. +..+..++++|+++.++++|+++
T Consensus 557 ----~G-~~vLvafv~G~~A~~~e~lsdeE~v~~vL~~Lr~i 593 (808)
T PLN02328 557 ----SG-GPLLIALVAGDAAVKFETLSPVESVKRVLQILRGI 593 (808)
T ss_pred ----CC-CcEEEEEecChhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 11 2344444442 24566889999999999999864
No 24
>PLN02676 polyamine oxidase
Probab=98.55 E-value=8.1e-07 Score=82.24 Aligned_cols=161 Identities=15% Similarity=0.141 Sum_probs=96.4
Q ss_pred CCCCcchhHHHHHHHHHHC------CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhh
Q 026885 42 KGSPDVYLSGPIRKYITDK------GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR 115 (231)
Q Consensus 42 ~g~~~~~l~~~l~~~l~~~------Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~ 115 (231)
++++. .+++.|++.+.+. +.+|++|++|++|..+++ | ..|.+ .+|+++.||+||+|+|+..+++
T Consensus 220 ~~G~~-~l~~~La~~~~~~~~~~~~~~~I~l~~~V~~I~~~~~--g----V~V~~---~~G~~~~a~~VIvtvPl~vLk~ 289 (487)
T PLN02676 220 PRGYE-SLVYYLAEQFLSTKSGKITDPRLKLNKVVREISYSKN--G----VTVKT---EDGSVYRAKYVIVSVSLGVLQS 289 (487)
T ss_pred CCCHH-HHHHHHHhhcccccccccCCCceecCCEeeEEEEcCC--c----EEEEE---CCCCEEEeCEEEEccChHHhcc
Confidence 45665 5888888876543 357999999999998863 3 34544 3788899999999999999875
Q ss_pred -hCCCc-ccCchHHHHhhCCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCcceecCC--CCcceeecccCCCCcc
Q 026885 116 -LLPSS-WREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPD--ADFSCFADLALTSPED 191 (231)
Q Consensus 116 -Ll~~~-~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~~~~~~~s~~~p~~ 191 (231)
.+.-. +.+....+.+.++..-.+.-+.+.|++++..-. . ......+... ....++... +.
T Consensus 290 ~~I~F~P~LP~~k~~ai~~l~~g~~~Kv~l~f~~~FW~~~-------~----~~~~~~~~~~~~~~~~~~~~~---~~-- 353 (487)
T PLN02676 290 DLIKFKPPLPDWKIEAIYQFDMAVYTKIFLKFPYKFWPSG-------P----GTEFFLYAHERRGYYPFWQHL---EN-- 353 (487)
T ss_pred CceEEeCCCCHHHHHHHHhCCceeeEEEEEEeCCCCCCCC-------C----Cceeeeeeccccccchhhhhc---cc--
Confidence 22111 111223345677777789999999999764100 0 0001111111 001111110 11
Q ss_pred cccCCCceEEEEEeec--CCCCCCCCHHHHHHHHHHHhhcc
Q 026885 192 YYREGQGSLLQCVLTP--GDPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 192 ~~~~~~~~~~~~~~s~--~~~~~~~~~eel~~~~~~~L~~~ 230 (231)
..++. .++..++.. +..+..+++++..+.++++|+++
T Consensus 354 -~~~~~-~~l~~~~~g~~a~~~~~~s~e~~~~~vl~~L~~~ 392 (487)
T PLN02676 354 -EYPGS-NVLFVTVTDEESRRIEQQPDSETKAEIMEVLRKM 392 (487)
T ss_pred -CCCCC-CEEEEEechHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 01122 344444432 23566789999999999999875
No 25
>PLN02268 probable polyamine oxidase
Probab=98.50 E-value=2.7e-06 Score=77.27 Aligned_cols=142 Identities=14% Similarity=0.062 Sum_probs=85.5
Q ss_pred CCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhh-CCCcc-cCchHHHHhhCCCCCc
Q 026885 60 KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRL-LPSSW-REMKFFNNIYALVGVP 137 (231)
Q Consensus 60 ~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~L-l~~~~-~~~~~~~~~~~l~~~~ 137 (231)
.|++|++|++|++|...++ + +.|++. +|+++.||.||+|+|+..++++ +.-.+ .+....+.+.++.+.+
T Consensus 209 ~~~~i~~~~~V~~i~~~~~--~----v~v~~~---~g~~~~ad~VIva~P~~~l~~~~i~f~p~lp~~~~~ai~~~~~g~ 279 (435)
T PLN02268 209 KGLDIRLNHRVTKIVRRYN--G----VKVTVE---DGTTFVADAAIIAVPLGVLKANIIKFEPELPEWKEEAISDLGVGI 279 (435)
T ss_pred ccCceeCCCeeEEEEEcCC--c----EEEEEC---CCcEEEcCEEEEecCHHHHhcCcceecCCCCHHHHHHHHhCCccc
Confidence 3678999999999998763 3 335543 7778999999999999998753 32111 1122234567788778
Q ss_pred EEEEEEEecCccchhhhhHHHHHhhhhcCCCcceecCCCCcceeecccCCCCcccccCCCceEEEEEeec--CCCCCCCC
Q 026885 138 VVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPDADFSCFADLALTSPEDYYREGQGSLLQCVLTP--GDPYMPLP 215 (231)
Q Consensus 138 i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~p~~~~~~~~~~~~~~~~s~--~~~~~~~~ 215 (231)
+.-+.+.|++++.+ . . .....+.........+.+. .+ ..+ ..++..++.. +..+..++
T Consensus 280 ~~Kv~l~f~~~fw~----~--~------~~~g~~~~~~~~~~~~~~~---~~----~~g-~~~l~~~~~g~~a~~~~~~~ 339 (435)
T PLN02268 280 ENKIALHFDSVFWP----N--V------EFLGVVAPTSYGCSYFLNL---HK----ATG-HPVLVYMPAGRLARDIEKLS 339 (435)
T ss_pred eeEEEEEeCCCCCC----C--C------ceeeccCCCCCCceEEEec---cc----CCC-CCEEEEEeccHHHHHHHhCC
Confidence 88999999986531 0 0 0001111111111111111 00 012 2344444442 34677899
Q ss_pred HHHHHHHHHHHhhcc
Q 026885 216 NDEIIRRVAKQVGSV 230 (231)
Q Consensus 216 ~eel~~~~~~~L~~~ 230 (231)
++|+++.++++|+++
T Consensus 340 ~~e~~~~v~~~L~~~ 354 (435)
T PLN02268 340 DEAAANFAMSQLKKM 354 (435)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999875
No 26
>PLN02568 polyamine oxidase
Probab=98.47 E-value=2.3e-06 Score=80.08 Aligned_cols=95 Identities=13% Similarity=0.053 Sum_probs=70.3
Q ss_pred eCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhh----
Q 026885 41 LKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRL---- 116 (231)
Q Consensus 41 ~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~L---- 116 (231)
.+|+++ .|++.|++.+. +.+|++|++|++|..+++ + +.|.+. +|+++.||+||+|+|+..+++-
T Consensus 237 i~gG~~-~Li~~La~~L~--~~~I~ln~~V~~I~~~~~--~----v~V~~~---dG~~~~aD~VIvTvPl~vL~~~~~~~ 304 (539)
T PLN02568 237 IAKGYL-SVIEALASVLP--PGTIQLGRKVTRIEWQDE--P----VKLHFA---DGSTMTADHVIVTVSLGVLKAGIGED 304 (539)
T ss_pred ECCcHH-HHHHHHHhhCC--CCEEEeCCeEEEEEEeCC--e----EEEEEc---CCCEEEcCEEEEcCCHHHHhhccccc
Confidence 455664 57888888773 568999999999998762 2 345553 7888999999999999998851
Q ss_pred ---C-CCcccCchHHHHhhCCCCCcEEEEEEEecCcc
Q 026885 117 ---L-PSSWREMKFFNNIYALVGVPVVTVQLRYNGWV 149 (231)
Q Consensus 117 ---l-~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~ 149 (231)
+ |. .+....+.+.++..-.+.-+.|.|++++
T Consensus 305 ~i~F~P~--LP~~k~~Ai~~l~~g~~~Ki~l~f~~~f 339 (539)
T PLN02568 305 SGLFSPP--LPDFKTDAISRLGFGVVNKLFVELSPRP 339 (539)
T ss_pred cceecCC--CCHHHHHHHHhcCCceeeEEEEEecCCC
Confidence 2 32 1122345678888778888999999975
No 27
>COG2907 Predicted NAD/FAD-binding protein [General function prediction only]
Probab=98.37 E-value=2e-06 Score=75.08 Aligned_cols=130 Identities=16% Similarity=0.074 Sum_probs=95.2
Q ss_pred CchHHHHHcCCCCCCcccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCC----cEEEcCceeeEEEec
Q 026885 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKG----GRFHLRWGCREILYD 76 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~G----g~i~~~~~V~~i~~~ 76 (231)
+|.||..|..+++..+++...++.+++.+- .+|... +++.|.-.++..+-.+++++.+ ++|+++++|.+|..-
T Consensus 170 ~l~P~~aaiwstp~~d~~~~pa~~~~~f~~--nhGll~-l~~rp~wrtV~ggS~~yvq~laa~~~~~i~t~~~V~~l~rl 246 (447)
T COG2907 170 FLQPLVAAIWSTPLADASRYPACNFLVFTD--NHGLLY-LPKRPTWRTVAGGSRAYVQRLAADIRGRIETRTPVCRLRRL 246 (447)
T ss_pred hHHHHHHHHhcCcHhhhhhhhHHHHHHHHh--ccCcee-cCCCCceeEcccchHHHHHHHhccccceeecCCceeeeeeC
Confidence 689999999999999999999888775333 334433 6666665566777777777664 579999999999998
Q ss_pred cCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCCCcccCchHHHHhhCCCCCcEEEEEEE
Q 026885 77 KAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWREMKFFNNIYALVGVPVVTVQLR 144 (231)
Q Consensus 77 ~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~ 144 (231)
.+ | |++.. .+|+...+|+||.++.+.....||++. .....+-+.++.|+..-.|...
T Consensus 247 Pd--G------v~l~~-~~G~s~rFD~vViAth~dqAl~mL~e~--sp~e~qll~a~~Ys~n~aVlht 303 (447)
T COG2907 247 PD--G------VVLVN-ADGESRRFDAVVIATHPDQALALLDEP--SPEERQLLGALRYSANTAVLHT 303 (447)
T ss_pred CC--c------eEEec-CCCCccccceeeeecChHHHHHhcCCC--CHHHHHHHHhhhhhhceeEEee
Confidence 74 5 43431 258888899999999998777788763 2223345677887776666554
No 28
>PLN02976 amine oxidase
Probab=98.35 E-value=8.2e-06 Score=82.64 Aligned_cols=162 Identities=12% Similarity=0.100 Sum_probs=94.4
Q ss_pred eeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCC------CCcceEEEEEEEecCCCeEEecCEEEEcCChhhH
Q 026885 40 MLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAA------NAETYVKGLAMSKATDKKVVQADAYVAACDVPGI 113 (231)
Q Consensus 40 ~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~------~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~ 113 (231)
..+||++ .|+++|++.+ .|++|++|++|...+++ .+ .-+.|.+ .+|+++.||+||+|+|+..+
T Consensus 930 rIkGGYq-qLIeALAe~L-----~IrLNtpVtrId~s~~d~~~~~s~~--dGVtVtT---sDGetftADaVIVTVPLGVL 998 (1713)
T PLN02976 930 MIKGGYS-NVVESLAEGL-----DIHLNHVVTDVSYGSKDAGASGSSR--KKVKVST---SNGSEFLGDAVLITVPLGCL 998 (1713)
T ss_pred EeCCCHH-HHHHHHHhhC-----CeecCCeEEEEEecCCcccccccCC--CcEEEEE---CCCCEEEeceEEEeCCHHHh
Confidence 3577775 6788887755 49999999999984200 01 1123444 37888999999999999988
Q ss_pred hh----hCCCcccCchHHHHhhCCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcCCCcceecCC-CCcceeecccCCC
Q 026885 114 KR----LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALGLDNLLYTPD-ADFSCFADLALTS 188 (231)
Q Consensus 114 ~~----Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~~s~~~ 188 (231)
+. +-|.. +......+..+..-.+.-+.|.|++++.+-. . .......... ....++..+.+..
T Consensus 999 Kag~I~FsPPL--Pe~KqaAIqrLgfG~lnKV~LeFdrpFW~~d-------~----d~FG~s~edtdlrG~~~~~wnlr~ 1065 (1713)
T PLN02976 999 KAETIKFSPPL--PDWKYSSIQRLGFGVLNKVVLEFPEVFWDDS-------V----DYFGATAEETDLRGQCFMFWNVKK 1065 (1713)
T ss_pred hhcccccCCcc--cHHHHHHHHhhccccceEEEEEeCCccccCC-------C----CccccccccCCCCceEEEeccCCC
Confidence 73 22321 1122344677777788889999999764100 0 0000000000 0011122222111
Q ss_pred CcccccCCCceEEEEEee-cCCCCCCCCHHHHHHHHHHHhhcc
Q 026885 189 PEDYYREGQGSLLQCVLT-PGDPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 189 p~~~~~~~~~~~~~~~~s-~~~~~~~~~~eel~~~~~~~L~~~ 230 (231)
+ .+.+.++.++.. .+..+..++++|+++.++++|+++
T Consensus 1066 p-----sG~pVLVafv~G~aAreiEsLSDEE~Ve~ALe~LrKl 1103 (1713)
T PLN02976 1066 T-----VGAPVLIALVVGKAAIDGQSMSSSDHVNHALMVLRKL 1103 (1713)
T ss_pred C-----CCCCEEEEEeccHhHHHHhhCCHHHHHHHHHHHHHHH
Confidence 1 122344544433 234566789999999999999875
No 29
>COG1231 Monoamine oxidase [Amino acid transport and metabolism]
Probab=98.30 E-value=1.9e-05 Score=71.22 Aligned_cols=157 Identities=18% Similarity=0.161 Sum_probs=102.1
Q ss_pred CCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCCCccc
Q 026885 43 GSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSWR 122 (231)
Q Consensus 43 g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~~~~~ 122 (231)
|+.. .+.++.++. .|-.|+++++|.+|..+++ ||+++- .+.+++.+|.+|+|+|+..+.++-=+...
T Consensus 206 GGmd-~la~Afa~q---l~~~I~~~~~V~rI~q~~~--------gV~Vt~-~~~~~~~ad~~i~tiPl~~l~qI~f~P~l 272 (450)
T COG1231 206 GGMD-QLAEAFAKQ---LGTRILLNEPVRRIDQDGD--------GVTVTA-DDVGQYVADYVLVTIPLAILGQIDFAPLL 272 (450)
T ss_pred ccHH-HHHHHHHHH---hhceEEecCceeeEEEcCC--------eEEEEe-CCcceEEecEEEEecCHHHHhhcccCCCC
Confidence 5542 455555544 5778999999999999873 354442 13378899999999999988775322123
Q ss_pred CchHHHHhhCCCCCcEEEEEEEecCccchhhhhHHHHHhhhhcC-CCcceecCCCCcceeecccCCCCcccccCCCceEE
Q 026885 123 EMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLERSRQLRRALG-LDNLLYTPDADFSCFADLALTSPEDYYREGQGSLL 201 (231)
Q Consensus 123 ~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~~~~l~~~~~-~~~~~~~~~~~~~~~~~~s~~~p~~~~~~~~~~~~ 201 (231)
+.++.+.++.+.+.+.+-+.+.|++++.+-. . +..+.|++.+ ..+.+. |+.....|.+.++
T Consensus 273 ~~~~~~a~~~~~y~~~~K~~v~f~rpFWee~------------~~l~G~~~tD~~--~~~i~~----~s~~~~~G~gVl~ 334 (450)
T COG1231 273 PAEYKQAAKGVPYGSATKIGVAFSRPFWEEA------------GILGGESLTDLG--LGFISY----PSAPFADGPGVLL 334 (450)
T ss_pred CHHHHHHhcCcCcchheeeeeecCchhhhhc------------ccCCceEeecCC--cceEec----CccccCCCceEEE
Confidence 3345566788889999999999999886221 2 3444444443 223222 2111113334455
Q ss_pred EEEee--cCCCCCCCCHHHHHHHHHHHhhcc
Q 026885 202 QCVLT--PGDPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 202 ~~~~s--~~~~~~~~~~eel~~~~~~~L~~~ 230 (231)
..+.. .+..+..++++|.++.++..+.++
T Consensus 335 g~~~~g~~A~~~~~~~~~~r~~~vl~~l~~~ 365 (450)
T COG1231 335 GSYAFGDDALVIDALPEAERRQKVLARLAKL 365 (450)
T ss_pred eeeeccccceeEecCCHHHHHHHHHHhHhhh
Confidence 54432 455788999999999999998875
No 30
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.29 E-value=1.2e-05 Score=74.50 Aligned_cols=191 Identities=20% Similarity=0.210 Sum_probs=114.2
Q ss_pred chHHHHHcCCCCCCcccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCC
Q 026885 2 WDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANA 81 (231)
Q Consensus 2 w~pl~~a~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~ 81 (231)
|-..-+...++...+-+...++.....|.... .. ....++.. .++..++. |..|+++++|.+|...++ +
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~-~~--~~~~~G~~-~v~~~la~-----~l~I~~~~~v~~i~~~~~--~ 246 (501)
T KOG0029|consen 178 WHLVNLELTFIAHLENASARLWDQDELFGGGG-IH--LLMKGGYE-PVVNSLAE-----GLDIHLNKRVRKIKYGDD--G 246 (501)
T ss_pred HHHHHHHHHhhccHhHhhHHhhhhhhhccccc-ch--hHhhCCcc-HHHhhcCC-----CcceeeceeeEEEEEecC--C
Confidence 33444455555555555556665555555433 11 22444443 23444444 999999999999999984 4
Q ss_pred cceEEEEEEEecCCCeEEecCEEEEcCChhhHhh----hCCCcccCchHHHHhhCCCCCcEEEEEEEecCccchhhhhHH
Q 026885 82 ETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR----LLPSSWREMKFFNNIYALVGVPVVTVQLRYNGWVTELQDLER 157 (231)
Q Consensus 82 ~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~----Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~~~~~~~~~~~ 157 (231)
+ ..+++. ++..+.+|+||+++|...++. +.|.. +....+.++++..-++.-|.++|++.+.. +
T Consensus 247 --~-~~~~~~---~~~~~~~d~vvvt~pl~vLk~~~i~F~P~L--p~~k~~aI~~lg~g~~~Kv~l~F~~~fW~-~---- 313 (501)
T KOG0029|consen 247 --A-VKVTVE---TGDGYEADAVVVTVPLGVLKSGLIEFSPPL--PRWKQEAIDRLGFGLVNKVILEFPRVFWD-Q---- 313 (501)
T ss_pred --c-eEEEEE---CCCeeEeeEEEEEccHHHhccCceeeCCCC--cHHHHHHHHhcCCCceeEEEEEeccccCC-C----
Confidence 3 345543 555589999999999998876 22332 23345678999988999999999997651 0
Q ss_pred HHHhhhhcCCCcceecCCCCcceeec---ccCCCCcccccCCCceEEEEEee-cCCCCCCCCHHHHHHHHHHHhhcc
Q 026885 158 SRQLRRALGLDNLLYTPDADFSCFAD---LALTSPEDYYREGQGSLLQCVLT-PGDPYMPLPNDEIIRRVAKQVGSV 230 (231)
Q Consensus 158 ~~~l~~~~~~~~~~~~~~~~~~~~~~---~s~~~p~~~~~~~~~~~~~~~~s-~~~~~~~~~~eel~~~~~~~L~~~ 230 (231)
..+.+... +..+.... +--..|. + +++.++..++. .+..+..++++++++.++..|+++
T Consensus 314 --------~~d~fg~~--~~~~~~~~~~~f~~~~~~--~--~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~l~k~ 376 (501)
T KOG0029|consen 314 --------DIDFFGIV--PETSVLRGLFTFYDCKPV--A--GHPVLMSVVVGEAAERVETLSDSEIVKKAMKLLRKV 376 (501)
T ss_pred --------CcCeEEEc--cccccccchhhhhhcCcc--C--CCCeEEEEehhhhhHHHhcCCHHHHHHHHHHHHHHH
Confidence 11111111 11111110 0000111 1 12234444443 456788999999999999999875
No 31
>PTZ00363 rab-GDP dissociation inhibitor; Provisional
Probab=98.14 E-value=2.3e-05 Score=71.77 Aligned_cols=66 Identities=14% Similarity=0.143 Sum_probs=57.7
Q ss_pred eeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 37 LLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 37 ~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+-|+.+|.+ .|++++.+.++..||++++|++|++|..+++ | ++.+|++. +|+++.|+.||++...
T Consensus 223 p~~yp~gG~g-~L~qal~r~~a~~Gg~~~L~~~V~~I~~~~~--g--~~~~V~~~---~Ge~i~a~~VV~~~s~ 288 (443)
T PTZ00363 223 PFIYPLYGLG-GLPQAFSRLCAIYGGTYMLNTPVDEVVFDEN--G--KVCGVKSE---GGEVAKCKLVICDPSY 288 (443)
T ss_pred cceeeCCCHH-HHHHHHHHHHHHcCcEEEcCCeEEEEEEcCC--C--eEEEEEEC---CCcEEECCEEEECccc
Confidence 4678899987 5999999999999999999999999999863 5 78889875 8999999999997554
No 32
>KOG1276 consensus Protoporphyrinogen oxidase [Coenzyme transport and metabolism]
Probab=97.90 E-value=0.00011 Score=65.96 Aligned_cols=138 Identities=17% Similarity=0.100 Sum_probs=97.3
Q ss_pred chHHHHHcCCCCCCcccHHHHHHHHHHH----------------Hhcc--------------ccceeeeeCCCCcchhHH
Q 026885 2 WDPVAYALGFIDCDNISARCMLTIFALF----------------ATKT--------------EASLLRMLKGSPDVYLSG 51 (231)
Q Consensus 2 w~pl~~a~~~~~~~~~Sa~~~~~~l~~~----------------~~~~--------------~~~~~g~~~g~~~~~l~~ 51 (231)
-.|||-.....|++++|++.++.-+... .+.+ ......-.+|++ +++.+
T Consensus 175 isp~i~GiyAgD~~~LSmk~~F~~l~~~Eqk~Gsi~~G~i~~~~~~~~~k~~e~~~~~~~~~e~~~~~sl~gGl-e~lP~ 253 (491)
T KOG1276|consen 175 ISPFIRGIYAGDPSELSMKSSFGKLWKVEQKHGSIILGTIRAKFARKRTKKAETALSAQAKKEKWTMFSLKGGL-ETLPK 253 (491)
T ss_pred HHHHhCccccCChHHhhHHHHHHHHHHHHHhccchhHHHHHHHHHhhcCCCccchhhhhhcccccchhhhhhhH-hHhHH
Confidence 3689999999999999999865533222 1111 011133345666 48999
Q ss_pred HHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe-EEecCEEEEcCChhhHhhhCCCcccCchHHHHh
Q 026885 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQADAYVAACDVPGIKRLLPSSWREMKFFNNI 130 (231)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~-~~~aD~vV~a~p~~~~~~Ll~~~~~~~~~~~~~ 130 (231)
++.++|.+.++.|-++.++..+..... | -+.+.+.. .+++ ....+++..++|.+.+..|++... .+....+
T Consensus 254 a~~~~L~~~~v~i~~~~~~~~~sk~~~--~---~~~~tl~~-~~~~~~~~~~~~~~t~~~~k~a~ll~~~~--~sls~~L 325 (491)
T KOG1276|consen 254 ALRKSLGEREVSISLGLKLSGNSKSRS--G---NWSLTLVD-HSGTQRVVVSYDAATLPAVKLAKLLRGLQ--NSLSNAL 325 (491)
T ss_pred HHHHHhcccchhhhccccccccccccc--C---CceeEeEc-CCCceeeeccccccccchHHhhhhccccc--hhhhhhh
Confidence 999999999999999999999988653 3 14454432 2443 334566666999999999998743 2334567
Q ss_pred hCCCCCcEEEEEEEecCc
Q 026885 131 YALVGVPVVTVQLRYNGW 148 (231)
Q Consensus 131 ~~l~~~~i~~v~L~~d~~ 148 (231)
..+.+.+++.|++.|.++
T Consensus 326 ~ei~y~~V~vVn~~yp~~ 343 (491)
T KOG1276|consen 326 SEIPYVPVAVVNTYYPKE 343 (491)
T ss_pred hcCCCCceEEEEEeccCc
Confidence 888999999999999874
No 33
>PF06100 Strep_67kDa_ant: Streptococcal 67 kDa myosin-cross-reactive antigen like family ; InterPro: IPR010354 Members of this family are thought to have structural features in common with the beta chain of the class II antigens, as well as myosin, and may play an important role in the pathogenesis [].
Probab=97.71 E-value=0.00052 Score=62.91 Aligned_cols=104 Identities=12% Similarity=0.131 Sum_probs=73.0
Q ss_pred HHHHcCCCCCCcccHHHHHHHHHHHHhccccc--eeeeeCCCCc--chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCC
Q 026885 5 VAYALGFIDCDNISARCMLTIFALFATKTEAS--LLRMLKGSPD--VYLSGPIRKYITDKGGRFHLRWGCREILYDKAAN 80 (231)
Q Consensus 5 l~~a~~~~~~~~~Sa~~~~~~l~~~~~~~~~~--~~g~~~g~~~--~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~ 80 (231)
++++++|.--.-.||.-|-..|++|...-.+- .-++-+..+. |.++.||.++|+++||++++|++|+.|.++.+ +
T Consensus 161 ~~W~T~FAFqpWhSa~E~rRyl~Rf~h~~~~l~~l~~l~~T~YNQyeSii~Pl~~~L~~~GV~F~~~t~V~di~~~~~-~ 239 (500)
T PF06100_consen 161 YMWSTMFAFQPWHSAVEFRRYLHRFIHEIPGLNDLSGLDRTKYNQYESIILPLIRYLKSQGVDFRFNTKVTDIDFDIT-G 239 (500)
T ss_pred HhHHHhhccCcchhHHHHHHHHHHHHHhcCCCCCccccccCccccHHHHHHHHHHHHHHCCCEEECCCEEEEEEEEcc-C
Confidence 35777888888899999999898887654332 2233344444 58999999999999999999999999999753 1
Q ss_pred CcceEEEEEEEecCCCeEEe---cCEEEEcCC
Q 026885 81 AETYVKGLAMSKATDKKVVQ---ADAYVAACD 109 (231)
Q Consensus 81 ~~~~v~~v~~~~~~~g~~~~---aD~vV~a~p 109 (231)
+...++++.+...+..+++. -|.|+.+..
T Consensus 240 ~~~~~~~i~~~~~g~~~~i~l~~~DlV~vT~G 271 (500)
T PF06100_consen 240 DKKTATRIHIEQDGKEETIDLGPDDLVFVTNG 271 (500)
T ss_pred CCeeEEEEEEEcCCCeeEEEeCCCCEEEEECC
Confidence 22256677766422233333 677876543
No 34
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=97.49 E-value=0.00028 Score=61.32 Aligned_cols=57 Identities=21% Similarity=0.140 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
..+.+.|.+.+++.|++|+.+++|++|..++ + ++++|.+. +|+ +.||.||.|+.++.
T Consensus 147 ~~l~~~l~~~~~~~Gv~i~~~~~V~~i~~~~---~--~v~gv~~~---~g~-i~ad~vV~a~G~~s 203 (358)
T PF01266_consen 147 RRLIQALAAEAQRAGVEIRTGTEVTSIDVDG---G--RVTGVRTS---DGE-IRADRVVLAAGAWS 203 (358)
T ss_dssp HHHHHHHHHHHHHTT-EEEESEEEEEEEEET---T--EEEEEEET---TEE-EEECEEEE--GGGH
T ss_pred cchhhhhHHHHHHhhhhccccccccchhhcc---c--cccccccc---ccc-cccceeEecccccc
Confidence 3789999999999999999999999999997 5 78889883 666 99999999988754
No 35
>KOG0685 consensus Flavin-containing amine oxidase [Coenzyme transport and metabolism]
Probab=97.41 E-value=0.0013 Score=59.73 Aligned_cols=79 Identities=22% Similarity=0.164 Sum_probs=57.2
Q ss_pred cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhh----hC-CCcccCchHHHHhhCCCCC
Q 026885 62 GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKR----LL-PSSWREMKFFNNIYALVGV 136 (231)
Q Consensus 62 g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~----Ll-~~~~~~~~~~~~~~~l~~~ 136 (231)
.++++|++|.+|+.+++ + + ..+++. ||+.+.||+||++++.-.+++ |. |..+. ..-+.|.+|..=
T Consensus 244 ~~~~~~~rv~~I~~~~~--~--~-v~l~c~---dg~v~~adhVIvTvsLGvLk~~h~~lF~P~LP~--~K~~AIe~lgfG 313 (498)
T KOG0685|consen 244 KRIHLNTRVENINWKNT--G--E-VKLRCS---DGEVFHADHVIVTVSLGVLKEQHHKLFVPPLPA--EKQRAIERLGFG 313 (498)
T ss_pred hhhcccccceeeccCCC--C--c-EEEEEe---CCcEEeccEEEEEeechhhhhhhhhhcCCCCCH--HHHHHHHhccCC
Confidence 46778899999999863 4 3 356675 999999999999999887765 44 32211 122456777766
Q ss_pred cEEEEEEEecCccc
Q 026885 137 PVVTVQLRYNGWVT 150 (231)
Q Consensus 137 ~i~~v~L~~d~~~~ 150 (231)
.+.-++|-|.+|+.
T Consensus 314 tv~KiFLE~E~pfw 327 (498)
T KOG0685|consen 314 TVNKIFLEFEEPFW 327 (498)
T ss_pred ccceEEEEccCCCC
Confidence 77788888888754
No 36
>COG2509 Uncharacterized FAD-dependent dehydrogenases [General function prediction only]
Probab=97.37 E-value=0.00053 Score=62.06 Aligned_cols=55 Identities=22% Similarity=0.323 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+++.+.++|+++|++|+++|+|..|++++ + .+.+|.++ +|+++.+|+||.|...
T Consensus 174 ~vvkni~~~l~~~G~ei~f~t~VeDi~~~~---~--~~~~v~~~---~g~~i~~~~vvlA~Gr 228 (486)
T COG2509 174 KVVKNIREYLESLGGEIRFNTEVEDIEIED---N--EVLGVKLT---KGEEIEADYVVLAPGR 228 (486)
T ss_pred HHHHHHHHHHHhcCcEEEeeeEEEEEEecC---C--ceEEEEcc---CCcEEecCEEEEccCc
Confidence 578999999999999999999999999997 4 57788775 8999999999999875
No 37
>COG2081 Predicted flavoproteins [General function prediction only]
Probab=97.31 E-value=0.00069 Score=60.46 Aligned_cols=62 Identities=15% Similarity=0.106 Sum_probs=50.2
Q ss_pred eeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCC
Q 026885 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (231)
Q Consensus 39 g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p 109 (231)
-||...-++.+++.|.+.+++.||+|+++++|.+|..+++ ...+.+. +|+++.||.+|.|+.
T Consensus 103 ~Fp~sdkA~~Iv~~ll~~~~~~gV~i~~~~~v~~v~~~~~------~f~l~t~---~g~~i~~d~lilAtG 164 (408)
T COG2081 103 MFPDSDKASPIVDALLKELEALGVTIRTRSRVSSVEKDDS------GFRLDTS---SGETVKCDSLILATG 164 (408)
T ss_pred ecCCccchHHHHHHHHHHHHHcCcEEEecceEEeEEecCc------eEEEEcC---CCCEEEccEEEEecC
Confidence 3455444568999999999999999999999999999862 3456553 777899999998876
No 38
>PF03486 HI0933_like: HI0933-like protein; InterPro: IPR004792 This is a family of conserved hypothetical proteins that may include proteins with a dinucleotide-binding motif (Rossman fold), including oxidoreductases and dehydrogenases.; PDB: 2I0Z_A 3V76_A 2GQF_A.
Probab=97.21 E-value=0.0009 Score=60.73 Aligned_cols=65 Identities=15% Similarity=0.102 Sum_probs=45.9
Q ss_pred eeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
--||...-+..+.+.|.+.+++.|++|+++++|+.|+.++ + ++..|.+. +++.+.||.||.|+.-
T Consensus 100 r~fP~s~~a~~Vv~~L~~~l~~~gv~i~~~~~V~~i~~~~---~--~~f~v~~~---~~~~~~a~~vILAtGG 164 (409)
T PF03486_consen 100 RVFPKSDKASSVVDALLEELKRLGVEIHFNTRVKSIEKKE---D--GVFGVKTK---NGGEYEADAVILATGG 164 (409)
T ss_dssp EEEETT--HHHHHHHHHHHHHHHT-EEE-S--EEEEEEET---T--EEEEEEET---TTEEEEESEEEE----
T ss_pred EECCCCCcHHHHHHHHHHHHHHcCCEEEeCCEeeeeeecC---C--ceeEeecc---CcccccCCEEEEecCC
Confidence 3455554455789999999999999999999999999987 4 57778763 7889999999999663
No 39
>TIGR02352 thiamin_ThiO glycine oxidase ThiO. This family consists of the homotetrameric, FAD-dependent glycine oxidase ThiO, from species such as Bacillus subtilis that use glycine in thiamine biosynthesis. In general, members of this family will not be found in species such as E. coli that instead use tyrosine and the ThiH protein.
Probab=97.08 E-value=0.0023 Score=55.63 Aligned_cols=56 Identities=20% Similarity=0.092 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
.+...+.+.++++|++|+.+++|++|..++ + ++++|.+. +| .+.||.||.|+..+.
T Consensus 138 ~l~~~l~~~~~~~g~~~~~~~~v~~i~~~~---~--~~~~v~~~---~g-~~~a~~vV~a~G~~~ 193 (337)
T TIGR02352 138 ALLKALEKALEKLGVEIIEHTEVQHIEIRG---E--KVTAIVTP---SG-DVQADQVVLAAGAWA 193 (337)
T ss_pred HHHHHHHHHHHHcCCEEEccceEEEEEeeC---C--EEEEEEcC---CC-EEECCEEEEcCChhh
Confidence 688999999999999999999999999876 5 67788652 44 789999999988764
No 40
>TIGR03378 glycerol3P_GlpB glycerol-3-phosphate dehydrogenase, anaerobic, B subunit. Members of this protein family are the B subunit, product of the glpB gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=97.08 E-value=0.0039 Score=56.64 Aligned_cols=63 Identities=14% Similarity=0.137 Sum_probs=51.2
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCChhhHhhhC
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPGIKRLL 117 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~~~~~~Ll 117 (231)
-.+.+.|.+.++++||+|..+++|.++..++ + ++++|.+. ++ ..+.||.||+|+....-..|+
T Consensus 263 ~RL~~aL~~~~~~~Gg~il~g~~V~~i~~~~---~--~v~~V~t~---~g~~~~l~AD~vVLAaGaw~S~gL~ 327 (419)
T TIGR03378 263 IRLEEALKHRFEQLGGVMLPGDRVLRAEFEG---N--RVTRIHTR---NHRDIPLRADHFVLASGSFFSNGLV 327 (419)
T ss_pred HHHHHHHHHHHHHCCCEEEECcEEEEEEeeC---C--eEEEEEec---CCccceEECCEEEEccCCCcCHHHH
Confidence 3678999999999999999999999999887 5 78888653 44 478999999998876434443
No 41
>COG3380 Predicted NAD/FAD-dependent oxidoreductase [General function prediction only]
Probab=97.04 E-value=0.001 Score=56.70 Aligned_cols=92 Identities=16% Similarity=0.115 Sum_probs=67.2
Q ss_pred HHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCCCcc--cCchHH
Q 026885 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPSSW--REMKFF 127 (231)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~~~~--~~~~~~ 127 (231)
..++++++- .--+|.++++|++|...+ +.+.+... +.++...+|.||.++|.+.+..||.... .+....
T Consensus 107 msalak~LA-tdL~V~~~~rVt~v~~~~------~~W~l~~~--~g~~~~~~d~vvla~PAPQ~~~LLt~~~~~~p~~l~ 177 (331)
T COG3380 107 MSALAKFLA-TDLTVVLETRVTEVARTD------NDWTLHTD--DGTRHTQFDDVVLAIPAPQTATLLTTDADDLPAALR 177 (331)
T ss_pred hHHHHHHHh-ccchhhhhhhhhhheecC------CeeEEEec--CCCcccccceEEEecCCCcchhhcCcccccchHHHH
Confidence 345666543 567899999999999986 24666553 2445667999999999887777775422 223456
Q ss_pred HHhhCCCCCcEEEEEEEecCccc
Q 026885 128 NNIYALVGVPVVTVQLRYNGWVT 150 (231)
Q Consensus 128 ~~~~~l~~~~i~~v~L~~d~~~~ 150 (231)
..+..+.+.|+.++.|.|..+..
T Consensus 178 ~~~a~V~y~Pc~s~~lg~~q~l~ 200 (331)
T COG3380 178 AALADVVYAPCWSAVLGYPQPLD 200 (331)
T ss_pred HhhccceehhHHHHHhcCCccCC
Confidence 67888899999999999987664
No 42
>PF00890 FAD_binding_2: FAD binding domain of the Pfam family.; InterPro: IPR003953 In bacteria two distinct, membrane-bound, enzyme complexes are responsible for the interconversion of fumarate and succinate (1.3.99.1 from EC): fumarate reductase (Frd) is used in anaerobic growth, and succinate dehydrogenase (Sdh) is used in aerobic growth. Both complexes consist of two main components: a membrane-extrinsic component composed of a FAD-binding flavoprotein and an iron-sulphur protein; and an hydrophobic component composed of a membrane anchor protein and/or a cytochrome B. In eukaryotes mitochondrial succinate dehydrogenase (ubiquinone) (1.3.5.1 from EC) is an enzyme composed of two subunits: a FAD flavoprotein and and iron-sulphur protein. The flavoprotein subunit is a protein of about 60 to 70 Kd to which FAD is covalently bound to a histidine residue which is located in the N-terminal section of the protein []. The sequence around that histidine is well conserved in Frd and Sdh from various bacterial and eukaryotic species []. This family includes members that bind FAD such as the flavoprotein subunits from succinate and fumarate dehydrogenase, aspartate oxidase and the alpha subunit of adenylylsulphate reductase. ; GO: 0009055 electron carrier activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2BS4_A 2BS3_A 2BS2_A 1E7P_J 1QLB_A 1KNR_A 1KNP_A 1CHU_A 2E5V_A 3AEF_A ....
Probab=96.88 E-value=0.0046 Score=55.78 Aligned_cols=58 Identities=16% Similarity=0.241 Sum_probs=47.3
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCC
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p 109 (231)
..+++.|.+.++++|++|+++++|++|.+++ + +|+||......+|+ .+.|++||+|+-
T Consensus 141 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~e~---g--~V~Gv~~~~~~~g~~~~i~A~aVIlAtG 200 (417)
T PF00890_consen 141 KALIEALAKAAEEAGVDIRFNTRVTDLITED---G--RVTGVVAENPADGEFVRIKAKAVILATG 200 (417)
T ss_dssp HHHHHHHHHHHHHTTEEEEESEEEEEEEEET---T--EEEEEEEEETTTCEEEEEEESEEEE---
T ss_pred HHHHHHHHHHHhhcCeeeeccceeeeEEEeC---C--ceeEEEEEECCCCeEEEEeeeEEEeccC
Confidence 3689999999999999999999999999986 6 99999887434565 567999999877
No 43
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=96.72 E-value=0.0068 Score=54.54 Aligned_cols=55 Identities=20% Similarity=0.303 Sum_probs=46.2
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+.+.|.+.++++|++|+++++|++|+.++ + ++++|++ ++.++.||.||.|+...
T Consensus 202 ~~~~~l~~~~~~~G~~i~~~~~V~~i~~~~---~--~~~~v~t----~~~~~~a~~VV~a~G~~ 256 (416)
T PRK00711 202 LFTQRLAAMAEQLGVKFRFNTPVDGLLVEG---G--RITGVQT----GGGVITADAYVVALGSY 256 (416)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C--EEEEEEe----CCcEEeCCEEEECCCcc
Confidence 678889999999999999999999999876 4 5667765 45578999999998864
No 44
>PF00996 GDI: GDP dissociation inhibitor; InterPro: IPR018203 Rab proteins constitute a family of small GTPases that serve a regulatory role in vesicular membrane traffic [, ]; C-terminal geranylgeranylation is crucial for their membrane association and function. This post-translational modification is catalysed by Rab geranylgeranyl transferase (Rab-GGTase), a multi-subunit enzyme that contains a catalytic heterodimer and an accessory component, termed Rab escort protein (REP)-1 []. REP-1 presents newly- synthesised Rab proteins to the catalytic component, and forms a stable complex with the prenylated proteins following the transfer reaction. The mechanism of REP-1-mediated membrane association of Rab5 is similar to that mediated by Rab GDP dissociation inhibitor (GDI). REP-1 and Rab GDI also share other functional properties, including the ability to inhibit the release of GDP and to remove Rab proteins from membranes. The crystal structure of the bovine alpha-isoform of Rab GDI has been determined to a resolution of 1.81A []. The protein is composed of two main structural units: a large complex multi-sheet domain I, and a smaller alpha-helical domain II. The structural organisation of domain I is closely related to FAD-containing monooxygenases and oxidases []. Conserved regions common to GDI and the choroideraemia gene product, which delivers Rab to catalytic subunits of Rab geranylgeranyltransferase II, are clustered on one face of the domain []. The two most conserved regions form a compact structure at the apex of the molecule; site-directed mutagenesis has shown these regions to play a critical role in the binding of Rab proteins [].; PDB: 1VG9_C 1VG0_A 1LTX_R 3P1W_A 3CPH_H 3CPJ_G 3CPI_H 1UKV_G 2BCG_G 1GND_A ....
Probab=96.64 E-value=0.019 Score=52.54 Aligned_cols=81 Identities=21% Similarity=0.212 Sum_probs=61.6
Q ss_pred cHHHHHHHHHHHHh---ccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecC
Q 026885 18 SARCMLTIFALFAT---KTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT 94 (231)
Q Consensus 18 Sa~~~~~~l~~~~~---~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~ 94 (231)
+|.-....+++++. +...+.+.||.-|.+| |.+++.|...=.||...+|++|++|.++++ | ++.+|..
T Consensus 201 p~~~~l~ri~~yl~SlgryG~sPfLyP~YG~GE-LpQ~FcRl~AV~GG~Y~L~~~i~~i~~~~~--g--~~~gV~s---- 271 (438)
T PF00996_consen 201 PAREGLERIKLYLSSLGRYGKSPFLYPLYGLGE-LPQAFCRLSAVYGGTYMLNRPIDEIVVDED--G--KVIGVKS---- 271 (438)
T ss_dssp BSHHHHHHHHHHHHHHCCCSSSSEEEETT-TTH-HHHHHHHHHHHTT-EEESS--EEEEEEETT--T--EEEEEEE----
T ss_pred cHHHHHHHHHHHHHHHhccCCCCEEEEccCCcc-HHHHHHHHhhhcCcEEEeCCccceeeeecC--C--eEEEEec----
Confidence 45566666666543 2334478999999885 999999999999999999999999999763 6 8888864
Q ss_pred CCeEEecCEEEEc
Q 026885 95 DKKVVQADAYVAA 107 (231)
Q Consensus 95 ~g~~~~aD~vV~a 107 (231)
+|+++.|+.||..
T Consensus 272 ~ge~v~~k~vI~d 284 (438)
T PF00996_consen 272 EGEVVKAKKVIGD 284 (438)
T ss_dssp TTEEEEESEEEEE
T ss_pred CCEEEEcCEEEEC
Confidence 8999999999975
No 45
>COG0579 Predicted dehydrogenase [General function prediction only]
Probab=96.60 E-value=0.0084 Score=54.61 Aligned_cols=63 Identities=13% Similarity=0.118 Sum_probs=49.3
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeE-EecCEEEEcCChhh--HhhhCC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV-VQADAYVAACDVPG--IKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~-~~aD~vV~a~p~~~--~~~Ll~ 118 (231)
.+...|++.++++|++|++|++|+.|+.+++ | ++-+.+ .+|++ ++|+.||.++..++ +.++..
T Consensus 154 ~~t~~l~e~a~~~g~~i~ln~eV~~i~~~~d--g---~~~~~~---~~g~~~~~ak~Vin~AGl~Ad~la~~~g 219 (429)
T COG0579 154 ELTRALAEEAQANGVELRLNTEVTGIEKQSD--G---VFVLNT---SNGEETLEAKFVINAAGLYADPLAQMAG 219 (429)
T ss_pred HHHHHHHHHHHHcCCEEEecCeeeEEEEeCC--c---eEEEEe---cCCcEEEEeeEEEECCchhHHHHHHHhC
Confidence 4688999999999999999999999999873 3 344444 37766 99999999998754 455543
No 46
>PRK06134 putative FAD-binding dehydrogenase; Reviewed
Probab=96.47 E-value=0.012 Score=55.76 Aligned_cols=57 Identities=23% Similarity=0.201 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe-EEec-CEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQA-DAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~-~~~a-D~vV~a~p~ 110 (231)
.+++.|.+.+++.|++|+++++|++|..++ | +++||.+.. .++. .+.| +.||+|+..
T Consensus 218 ~l~~~L~~~a~~~Gv~i~~~t~v~~l~~~~---g--~v~GV~~~~-~~~~~~i~a~k~VVlAtGg 276 (581)
T PRK06134 218 ALVARLLKSAEDLGVRIWESAPARELLRED---G--RVAGAVVET-PGGLQEIRARKGVVLAAGG 276 (581)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---C--EEEEEEEEE-CCcEEEEEeCCEEEEcCCC
Confidence 588999999999999999999999999875 6 899987753 1332 4778 999988764
No 47
>TIGR03377 glycerol3P_GlpA glycerol-3-phosphate dehydrogenase, anaerobic, A subunit. Members of this protein family are the A subunit, product of the glpA gene, of a three-subunit, membrane-anchored, FAD-dependent anaerobic glycerol-3-phosphate dehydrogenase.
Probab=96.42 E-value=0.016 Score=54.12 Aligned_cols=59 Identities=12% Similarity=0.144 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~~ 111 (231)
.+...+++..+++|++|+.+++|++|..++ + ++++|++.+..+| ..+.|+.||.|+.++
T Consensus 129 ~l~~al~~~A~~~Ga~i~~~t~V~~i~~~~---~--~v~gv~v~~~~~g~~~~i~a~~VVnAaG~w 189 (516)
T TIGR03377 129 RLVAANVLDAQEHGARIFTYTKVTGLIREG---G--RVTGVKVEDHKTGEEERIEAQVVINAAGIW 189 (516)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEEC---C--EEEEEEEEEcCCCcEEEEEcCEEEECCCcc
Confidence 678888999999999999999999999876 5 7888887532234 468999999998864
No 48
>PRK07121 hypothetical protein; Validated
Probab=96.40 E-value=0.015 Score=53.98 Aligned_cols=60 Identities=17% Similarity=0.225 Sum_probs=47.7
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEec-CEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQA-DAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~a-D~vV~a~p~ 110 (231)
..+.+.|.+.+++.|++|+++++|++|..+++ | +++||+....+....+.| +.||+|+--
T Consensus 177 ~~~~~~L~~~~~~~gv~i~~~~~v~~l~~~~~--g--~v~Gv~~~~~~~~~~i~a~k~VVlAtGg 237 (492)
T PRK07121 177 AMLMDPLAKRAAALGVQIRYDTRATRLIVDDD--G--RVVGVEARRYGETVAIRARKGVVLAAGG 237 (492)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEECCC--C--CEEEEEEEeCCcEEEEEeCCEEEECCCC
Confidence 35889999999999999999999999998753 6 899998753112235778 999998773
No 49
>TIGR02485 CobZ_N-term precorrin 3B synthase CobZ. CobZ is essential for cobalamin biosynthesis (by knockout of the R. capsulatus gene ) and is complemented by the characterized precorrin 3B synthase CobG. The enzyme has been shown to contain flavin, heme and Fe-S cluster cofactors and is believed to require dioxygen as a substrate. This model identifies the N-terminal portion of the R. capsulatus gene which, in other species exists as a separate protein. The C-terminal portion is homologous to the 2-component signal transduction system protein CitB (TIGR02484).
Probab=96.36 E-value=0.015 Score=52.89 Aligned_cols=57 Identities=12% Similarity=0.093 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p 109 (231)
.+.+.|.+.+++.|++|+++++|++|..+.+ ++ ++.+|... .++..+.|+.||+|+.
T Consensus 124 ~l~~~L~~~a~~~Gv~i~~~~~v~~l~~~~~-~g--~v~gv~~~--~~~~~i~ak~VIlAtG 180 (432)
T TIGR02485 124 ALTNALYSSAERLGVEIRYGIAVDRIPPEAF-DG--AHDGPLTT--VGTHRITTQALVLAAG 180 (432)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEEecCC-CC--eEEEEEEc--CCcEEEEcCEEEEcCC
Confidence 5889999999999999999999999998621 15 78888653 2446788999999987
No 50
>TIGR03862 flavo_PP4765 uncharacterized flavoprotein, PP_4765 family. This model describes a sharply distinctive clade of proteins within the larger family of flavoproteins described by Pfam model pfam03486 and TIGRFAMs model TIGR00275. The function is unknown.
Probab=96.34 E-value=0.014 Score=52.47 Aligned_cols=62 Identities=18% Similarity=0.115 Sum_probs=47.3
Q ss_pred eeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 39 RMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 39 g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
-||...-+..+++.|.+.+++.||+|+++++|++| ++ + + ..+.+. .+++.+.||.||.|+.-
T Consensus 78 vfP~S~~A~sVv~~L~~~l~~~gV~i~~~~~V~~i--~~---~--~-~~v~~~--~~~~~~~a~~vIlAtGG 139 (376)
T TIGR03862 78 VFPVEMKAAPLLRAWLKRLAEQGVQFHTRHRWIGW--QG---G--T-LRFETP--DGQSTIEADAVVLALGG 139 (376)
T ss_pred ECCCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEE--eC---C--c-EEEEEC--CCceEEecCEEEEcCCC
Confidence 45544555689999999999999999999999999 33 2 2 456553 23456899999999774
No 51
>PRK11101 glpA sn-glycerol-3-phosphate dehydrogenase subunit A; Provisional
Probab=96.33 E-value=0.02 Score=53.87 Aligned_cols=59 Identities=12% Similarity=0.108 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~~ 111 (231)
.+...+++..+++|++|+.+++|++|..++ + ++++|++.+..+| ..+.||.||.|+.++
T Consensus 150 rl~~al~~~A~~~Ga~i~~~t~V~~i~~~~---~--~v~gv~v~d~~~g~~~~i~A~~VVnAaG~w 210 (546)
T PRK11101 150 RLTAANMLDAKEHGAQILTYHEVTGLIREG---D--TVCGVRVRDHLTGETQEIHAPVVVNAAGIW 210 (546)
T ss_pred HHHHHHHHHHHhCCCEEEeccEEEEEEEcC---C--eEEEEEEEEcCCCcEEEEECCEEEECCChh
Confidence 567788888899999999999999999886 5 7889887532233 478999999998875
No 52
>PRK12835 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.32 E-value=0.015 Score=55.16 Aligned_cols=57 Identities=19% Similarity=0.246 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecC-EEEEcCC
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQAD-AYVAACD 109 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD-~vV~a~p 109 (231)
..+...|.+.+++.|++|+++++|++|..+++ | +|+||.... +|+ .+.|. .||+|+.
T Consensus 213 ~~~~~~l~~~~~~~gv~i~~~~~~~~Li~d~~--g--~V~Gv~~~~--~~~~~~i~a~~aVilAtG 272 (584)
T PRK12835 213 QSLVARLRLALKDAGVPLWLDSPMTELITDPD--G--AVVGAVVER--EGRTLRIGARRGVILATG 272 (584)
T ss_pred HHHHHHHHHHHHhCCceEEeCCEEEEEEECCC--C--cEEEEEEEe--CCcEEEEEeceeEEEecC
Confidence 46788899999999999999999999999753 6 899998753 343 46787 6887765
No 53
>PRK08274 tricarballylate dehydrogenase; Validated
Probab=96.30 E-value=0.017 Score=52.98 Aligned_cols=58 Identities=16% Similarity=0.111 Sum_probs=47.2
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe-cCCCeEEecCEEEEcCC
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-ATDKKVVQADAYVAACD 109 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~-~~~g~~~~aD~vV~a~p 109 (231)
..+.+.|.+.+++.|++|+++++|++|..++ + ++++|.... .++...+.|+.||+|+.
T Consensus 131 ~~l~~~l~~~~~~~gv~i~~~t~v~~l~~~~---g--~v~gv~~~~~~g~~~~i~a~~VIlAtG 189 (466)
T PRK08274 131 KALVNALYRSAERLGVEIRYDAPVTALELDD---G--RFVGARAGSAAGGAERIRAKAVVLAAG 189 (466)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C--eEEEEEEEccCCceEEEECCEEEECCC
Confidence 3578999999999999999999999999875 6 899987631 11234678999999986
No 54
>PRK12844 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.28 E-value=0.015 Score=54.82 Aligned_cols=57 Identities=16% Similarity=0.230 Sum_probs=46.4
Q ss_pred cchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecC-EEEEcCC
Q 026885 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQAD-AYVAACD 109 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD-~vV~a~p 109 (231)
+..+.+.|.+.+++.|++|+++++|++|..++ | +|+||+... +|+ .+.|+ .||+|+.
T Consensus 207 G~~l~~~l~~~~~~~gv~i~~~~~v~~Li~~~---g--~v~Gv~~~~--~g~~~~i~A~~aVIlAtG 266 (557)
T PRK12844 207 GAALIGRMLEAALAAGVPLWTNTPLTELIVED---G--RVVGVVVVR--DGREVLIRARRGVLLASG 266 (557)
T ss_pred cHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC---C--EEEEEEEEE--CCeEEEEEecceEEEecC
Confidence 34689999999999999999999999999876 6 899998753 443 46674 7888766
No 55
>PRK12843 putative FAD-binding dehydrogenase; Reviewed
Probab=96.28 E-value=0.017 Score=54.76 Aligned_cols=57 Identities=18% Similarity=0.141 Sum_probs=46.2
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEec-CEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQA-DAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~a-D~vV~a~p~ 110 (231)
..+.+.|.+.+++.|++|+++++|++|..++ + +++||.+.. +|+ .+.| +.||+|+.-
T Consensus 221 ~~l~~aL~~~~~~~Gv~i~~~t~v~~Li~~~---g--~V~GV~~~~--~g~~~~i~A~~~VVlAtGg 280 (578)
T PRK12843 221 NALIGRLLYSLRARGVRILTQTDVESLETDH---G--RVIGATVVQ--GGVRRRIRARGGVVLATGG 280 (578)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC---C--EEEEEEEec--CCeEEEEEccceEEECCCC
Confidence 3688999999999999999999999998865 6 899998752 343 4665 688888763
No 56
>PRK07843 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.10 E-value=0.023 Score=53.60 Aligned_cols=59 Identities=14% Similarity=0.211 Sum_probs=45.6
Q ss_pred cchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecC-EEEEcCC
Q 026885 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQAD-AYVAACD 109 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD-~vV~a~p 109 (231)
+..+.++|.+.+++.|++|+++++|++|..++ + +|+||.....+....+.|+ .||+|+.
T Consensus 207 g~~~~~~L~~~~~~~gv~v~~~t~v~~l~~~~---g--~v~Gv~~~~~g~~~~i~A~~~VIlAtG 266 (557)
T PRK07843 207 GQALAAGLRIGLQRAGVPVLLNTPLTDLYVED---G--RVTGVHAAESGEPQLIRARRGVILASG 266 (557)
T ss_pred cHHHHHHHHHHHHcCCCEEEeCCEEEEEEEeC---C--EEEEEEEEeCCcEEEEEeceeEEEccC
Confidence 44688999999999999999999999999875 6 8999877531122346785 6888655
No 57
>PRK12845 3-ketosteroid-delta-1-dehydrogenase; Reviewed
Probab=96.08 E-value=0.026 Score=53.44 Aligned_cols=56 Identities=16% Similarity=0.092 Sum_probs=44.9
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEec-CEEEEcCC
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQA-DAYVAACD 109 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~a-D~vV~a~p 109 (231)
..|.++|.+.+++.|++|+++++|++|..++ | +|+||.... +|+ .+.+ ..||+|+.
T Consensus 217 ~~l~~~L~~~~~~~Gv~i~~~t~v~~Li~~~---g--~V~GV~~~~--~g~~~~i~a~kaVILAtG 275 (564)
T PRK12845 217 QALAAGLFAGVLRAGIPIWTETSLVRLTDDG---G--RVTGAVVDH--RGREVTVTARRGVVLAAG 275 (564)
T ss_pred HHHHHHHHHHHHHCCCEEEecCEeeEEEecC---C--EEEEEEEEE--CCcEEEEEcCCEEEEecC
Confidence 3689999999999999999999999999764 6 899997653 343 3455 58888866
No 58
>PRK06481 fumarate reductase flavoprotein subunit; Validated
Probab=96.05 E-value=0.026 Score=52.60 Aligned_cols=56 Identities=18% Similarity=0.251 Sum_probs=46.4
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACD 109 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p 109 (231)
.+++.|.+.+++.|++|+++++|++|..++ | ++++|.+... ++ .++.||.||+++.
T Consensus 191 ~l~~~L~~~~~~~gv~i~~~t~v~~l~~~~---g--~V~Gv~~~~~-~g~~~~i~a~~VVlAtG 248 (506)
T PRK06481 191 YLVDGLLKNVQERKIPLFVNADVTKITEKD---G--KVTGVKVKIN-GKETKTISSKAVVVTTG 248 (506)
T ss_pred HHHHHHHHHHHHcCCeEEeCCeeEEEEecC---C--EEEEEEEEeC-CCeEEEEecCeEEEeCC
Confidence 578999999999999999999999998765 6 8999877532 22 3688999999876
No 59
>PRK06175 L-aspartate oxidase; Provisional
Probab=96.04 E-value=0.041 Score=50.28 Aligned_cols=58 Identities=14% Similarity=0.031 Sum_probs=45.3
Q ss_pred cchhHHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 46 DVYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 46 ~~~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
+..+.+.|.+.+++ .|++|+++++|++|..++ + ++.||.... +++ .+.|+.||+|+.-
T Consensus 127 g~~l~~~L~~~~~~~~gV~i~~~t~v~~Li~~~---~--~v~Gv~~~~--~g~~~~i~Ak~VILAtGG 187 (433)
T PRK06175 127 GKKVEKILLKKVKKRKNITIIENCYLVDIIEND---N--TCIGAICLK--DNKQINIYSKVTILATGG 187 (433)
T ss_pred hHHHHHHHHHHHHhcCCCEEEECcEeeeeEecC---C--EEEEEEEEE--CCcEEEEEcCeEEEccCc
Confidence 34678889988876 499999999999998775 5 788976542 343 5789999999773
No 60
>PRK12842 putative succinate dehydrogenase; Reviewed
Probab=96.03 E-value=0.027 Score=53.30 Aligned_cols=57 Identities=23% Similarity=0.222 Sum_probs=45.3
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe-EEecC-EEEEcCC
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQAD-AYVAACD 109 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~-~~~aD-~vV~a~p 109 (231)
..+.+.|.+.+++.|++|+++++|++|..++ + +++||++.. .+++ .+.++ .||+|+.
T Consensus 214 ~~l~~~L~~~~~~~Gv~i~~~~~v~~l~~~~---g--~V~GV~~~~-~~~~~~i~a~k~VVlAtG 272 (574)
T PRK12842 214 NALAARLAKSALDLGIPILTGTPARELLTEG---G--RVVGARVID-AGGERRITARRGVVLACG 272 (574)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEeeC---C--EEEEEEEEc-CCceEEEEeCCEEEEcCC
Confidence 3588899999999999999999999999876 6 899998752 1333 46776 6777766
No 61
>TIGR01813 flavo_cyto_c flavocytochrome c. This model describes a family of redox proteins related to the succinate dehydrogenases and fumarate reductases of E. coli, mitochondria, and other well-characterized systems. A member of this family from Shewanella frigidimarina NCIMB400 is characterized as a water-soluble periplasmic protein with four heme groups, a non-covalently bound FAD, and essentially unidirectional fumarate reductase activity. At least seven distinct members of this family are found in Shewanella oneidensis, a species able to use a wide variety of pathways for respiraton.
Probab=96.03 E-value=0.029 Score=51.06 Aligned_cols=58 Identities=19% Similarity=0.178 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
.+.+.|.+.+++.|++|+++++|++|..+++ | ++++|++.. .+++ .+.++.||+|+-.
T Consensus 131 ~l~~~l~~~~~~~gv~i~~~~~v~~l~~~~~--g--~v~Gv~~~~-~~g~~~~~~a~~VVlAtGg 190 (439)
T TIGR01813 131 EIVQKLYKKAKKEGIDTRLNSKVEDLIQDDQ--G--TVVGVVVKG-KGKGIYIKAAKAVVLATGG 190 (439)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEeeEeEECCC--C--cEEEEEEEe-CCCeEEEEecceEEEecCC
Confidence 5789999999999999999999999998653 6 799988753 2343 4679999988763
No 62
>TIGR01816 sdhA_forward succinate dehydrogenase, flavoprotein subunit, E. coli/mitochondrial subgroup. Succinate dehydrogenase and fumarate reductase are homologous enzymes reversible in principle but favored under different circumstances. This model represents a narrowly defined clade of the succinate dehydrogenase flavoprotein subunit as found in mitochondria, in Rickettsia, in E. coli and other Proteobacteria, and in a few other lineages. However, this model excludes all known fumarate reductases. It also excludes putative succinate dehydrogenases that appear to diverged before the split between E. coli succinate dehydrogenase and fumarate reductase.
Probab=95.99 E-value=0.042 Score=51.99 Aligned_cols=60 Identities=12% Similarity=0.064 Sum_probs=48.5
Q ss_pred cchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
+..+.+.|.+.+++.|++|+.+++|++|..++ | ++.|+......+|+ .+.|++||+|+.-
T Consensus 118 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~---g--~v~Ga~~~~~~~g~~~~i~AkaVILATGG 179 (565)
T TIGR01816 118 GHAILHTLYQQNLKADTSFFNEYFALDLLMED---G--ECRGVIAYCLETGEIHRFRAKAVVLATGG 179 (565)
T ss_pred hHHHHHHHHHHHHhCCCEEEeccEEEEEEeeC---C--EEEEEEEEEcCCCcEEEEEeCeEEECCCC
Confidence 34688999999999999999999999999875 6 89998764222454 5679999999773
No 63
>PRK07573 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.90 E-value=0.037 Score=53.17 Aligned_cols=55 Identities=15% Similarity=0.116 Sum_probs=44.4
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
+.|.+.+++.|++|+++++|++|..++ | ++.||......+|+ .+.|+.||+|+.-
T Consensus 174 ~~L~~~~~~~gV~i~~~t~v~~Li~d~---g--~V~GV~~~~~~~g~~~~i~AkaVVLATGG 230 (640)
T PRK07573 174 QALSRQIAAGTVKMYTRTEMLDLVVVD---G--RARGIVARNLVTGEIERHTADAVVLATGG 230 (640)
T ss_pred HHHHHHHHhcCCEEEeceEEEEEEEeC---C--EEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 667778889999999999999999875 6 89999875322453 5789999999773
No 64
>PRK06847 hypothetical protein; Provisional
Probab=95.88 E-value=0.47 Score=41.91 Aligned_cols=63 Identities=17% Similarity=0.158 Sum_probs=48.1
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-Hhh-hCCC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKR-LLPS 119 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~-Ll~~ 119 (231)
.+.+.|.+.+++.|++|+++++|++|+.++ + + ..+.+. +|+++.+|.||.|...+. ..+ +++.
T Consensus 108 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~--~-~~v~~~---~g~~~~ad~vI~AdG~~s~~r~~l~~~ 172 (375)
T PRK06847 108 ALARILADAARAAGADVRLGTTVTAIEQDD---D--G-VTVTFS---DGTTGRYDLVVGADGLYSKVRSLVFPD 172 (375)
T ss_pred HHHHHHHHHHHHhCCEEEeCCEEEEEEEcC---C--E-EEEEEc---CCCEEEcCEEEECcCCCcchhhHhcCC
Confidence 467888888888999999999999998765 3 2 345553 788899999999988754 444 3343
No 65
>TIGR03197 MnmC_Cterm tRNA U-34 5-methylaminomethyl-2-thiouridine biosynthesis protein MnmC, C-terminal domain. In Escherichia coli, the protein previously designated YfcK is now identified as the bifunctional enzyme MnmC. It acts, following the action of the heterotetramer of GidA and MnmE, in the modification of U-34 of certain tRNA to 5-methylaminomethyl-2-thiouridine (mnm5s2U). In other bacterial, the corresponding proteins are usually but always found as a single polypeptide chain, but occasionally as the product of tandem genes. This model represents the C-terminal region of the multifunctional protein.
Probab=95.83 E-value=0.019 Score=51.29 Aligned_cols=55 Identities=15% Similarity=0.010 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
.+...|.+.+++ |++|+.+++|++|+.++ + + +.|++. +|+++.||.||.|+.++.
T Consensus 136 ~~~~~l~~~~~~-G~~i~~~~~V~~i~~~~---~--~-~~v~t~---~g~~~~a~~vV~a~G~~~ 190 (381)
T TIGR03197 136 QLCRALLAHAGI-RLTLHFNTEITSLERDG---E--G-WQLLDA---NGEVIAASVVVLANGAQA 190 (381)
T ss_pred HHHHHHHhccCC-CcEEEeCCEEEEEEEcC---C--e-EEEEeC---CCCEEEcCEEEEcCCccc
Confidence 678899999998 99999999999999876 3 3 456553 677789999999988754
No 66
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=95.82 E-value=0.02 Score=45.98 Aligned_cols=55 Identities=15% Similarity=0.135 Sum_probs=41.1
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
+.+.+-+.+++++.|.+|+++++|+++..+++ + +.|.+. +++++.||.||.|+..
T Consensus 82 ~~v~~yl~~~~~~~~l~i~~~~~V~~v~~~~~--~----w~v~~~---~~~~~~a~~VVlAtG~ 136 (203)
T PF13738_consen 82 EEVLDYLQEYAERFGLEIRFNTRVESVRRDGD--G----WTVTTR---DGRTIRADRVVLATGH 136 (203)
T ss_dssp HHHHHHHHHHHHHTTGGEETS--EEEEEEETT--T----EEEEET---TS-EEEEEEEEE---S
T ss_pred HHHHHHHHHHHhhcCcccccCCEEEEEEEecc--E----EEEEEE---ecceeeeeeEEEeeec
Confidence 45778899999999999999999999999973 3 667663 6778899999999874
No 67
>PRK09078 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.80 E-value=0.052 Score=51.72 Aligned_cols=60 Identities=12% Similarity=0.156 Sum_probs=48.4
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
..+.+.|.+.+++.|++|+++++|++|..+++ | ++.||......+|+ .+.|++||+|+.-
T Consensus 149 ~~i~~~L~~~~~~~gi~i~~~~~v~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 210 (598)
T PRK09078 149 HAILHTLYQQSLKHNAEFFIEYFALDLIMDDG--G--VCRGVVAWNLDDGTLHRFRAHMVVLATGG 210 (598)
T ss_pred HHHHHHHHHHHhhcCCEEEEeEEEEEEEEcCC--C--EEEEEEEEECCCCcEEEEEcCEEEECCCC
Confidence 36888999999999999999999999998753 6 89999764222454 6779999999773
No 68
>TIGR00275 flavoprotein, HI0933 family. The model when searched with a partial length search brings in proteins with a dinucleotide-binding motif (Rossman fold) over the initial 40 residues of the model, including oxidoreductases and dehydrogenases. Partially characterized members include an FAD-binding protein from Bacillus cereus and flavoprotein HI0933 from Haemophilus influenzae.
Probab=95.76 E-value=0.048 Score=49.28 Aligned_cols=61 Identities=11% Similarity=0.017 Sum_probs=47.7
Q ss_pred eCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 41 LKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 41 ~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
+.......+.+.+.+.+++.|++|+++++|++|..++ + ...+.+ +++.+.+|.||.|+...
T Consensus 99 p~~~~a~~v~~~L~~~l~~~gv~i~~~~~V~~i~~~~---~---~~~v~~----~~~~i~ad~VIlAtG~~ 159 (400)
T TIGR00275 99 PCSDSAADVLDALLNELKELGVEILTNSKVKSIKKDD---N---GFGVET----SGGEYEADKVILATGGL 159 (400)
T ss_pred CCCCCHHHHHHHHHHHHHHCCCEEEeCCEEEEEEecC---C---eEEEEE----CCcEEEcCEEEECCCCc
Confidence 3333445789999999999999999999999997764 2 345554 56678999999998863
No 69
>PRK05329 anaerobic glycerol-3-phosphate dehydrogenase subunit B; Validated
Probab=95.71 E-value=0.048 Score=49.77 Aligned_cols=62 Identities=16% Similarity=0.125 Sum_probs=47.5
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCChhhHhhhC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPGIKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~~~~~~Ll 117 (231)
.+.+.|.+.+++.|++|+++++|++++.++ + ++..+... +| ..++||.||+|+.-..-..|.
T Consensus 260 rL~~aL~~~l~~~Gv~I~~g~~V~~v~~~~---~--~V~~v~~~---~g~~~~i~AD~VVLAtGrf~s~GL~ 323 (422)
T PRK05329 260 RLQNALRRAFERLGGRIMPGDEVLGAEFEG---G--RVTAVWTR---NHGDIPLRARHFVLATGSFFSGGLV 323 (422)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEeC---C--EEEEEEee---CCceEEEECCEEEEeCCCcccCcee
Confidence 467899999999999999999999999876 4 56666432 44 458899999998754333343
No 70
>PTZ00383 malate:quinone oxidoreductase; Provisional
Probab=95.71 E-value=0.046 Score=50.94 Aligned_cols=56 Identities=14% Similarity=0.002 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHH----CC--cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITD----KG--GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~----~G--g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
.+...+++.+++ .| ++|+++++|+.|..++ + +.+.|.+. +| ++.||.||.++..+.
T Consensus 212 ~L~~al~~~a~~~~~~~G~~v~i~~~t~V~~I~~~~---~--~~~~V~T~---~G-~i~A~~VVvaAG~~S 273 (497)
T PTZ00383 212 KLSESFVKHARRDALVPGKKISINLNTEVLNIERSN---D--SLYKIHTN---RG-EIRARFVVVSACGYS 273 (497)
T ss_pred HHHHHHHHHHHhhhhhcCCCEEEEeCCEEEEEEecC---C--CeEEEEEC---CC-EEEeCEEEECcChhH
Confidence 678899999999 88 7899999999999875 3 45667652 44 689999999988764
No 71
>TIGR01812 sdhA_frdA_Gneg succinate dehydrogenase or fumarate reductase, flavoprotein subunitGram-negative/mitochondrial subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in Gram-negative bacteria, mitochondria, and some Archaea. Mitochondrial forms interact with ubiquinone and are designated EC 1.3.5.1, but can be degraded to 1.3.99.1. Some isozymes in E. coli and other species run primarily in the opposite direction and are designated fumarate reductase.
Probab=95.70 E-value=0.059 Score=50.87 Aligned_cols=58 Identities=17% Similarity=0.162 Sum_probs=47.4
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
.+...|.+.+++.|++|+.+++|++|..++ | ++.||......+|+ .+.|+.||+|+.-
T Consensus 130 ~i~~~L~~~~~~~gv~i~~~~~v~~L~~~~---g--~v~Gv~~~~~~~g~~~~i~Ak~VVlAtGG 189 (566)
T TIGR01812 130 ALLHTLYEQCLKLGVSFFNEYFALDLIHDD---G--RVRGVVAYDLKTGEIVFFRAKAVVLATGG 189 (566)
T ss_pred HHHHHHHHHHHHcCCEEEeccEEEEEEEeC---C--EEEEEEEEECCCCcEEEEECCeEEECCCc
Confidence 577889999999999999999999999875 6 89998764323454 5789999999874
No 72
>TIGR01320 mal_quin_oxido malate:quinone-oxidoreductase. This membrane-associated enzyme is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in E. coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase.
Probab=95.59 E-value=0.063 Score=49.87 Aligned_cols=60 Identities=7% Similarity=0.127 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~~~ 112 (231)
.+..++.+.++++|++|+++++|++|+.+++ + . +.+.+....+| .++.||+||.++..+.
T Consensus 179 ~l~~aL~~~a~~~Gv~i~~~t~V~~i~~~~~--~--~-v~v~~~~~~~g~~~~i~A~~VV~AAG~~s 240 (483)
T TIGR01320 179 ALTKQLLGYLVQNGTTIRFGHEVRNLKRQSD--G--S-WTVTVKNTRTGGKRTLNTRFVFVGAGGGA 240 (483)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--C--e-EEEEEeeccCCceEEEECCEEEECCCcch
Confidence 6789999999999999999999999988652 3 2 33433211123 3689999998888653
No 73
>PRK11728 hydroxyglutarate oxidase; Provisional
Probab=95.59 E-value=0.053 Score=48.61 Aligned_cols=62 Identities=8% Similarity=0.111 Sum_probs=47.6
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh--HhhhCC
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG--IKRLLP 118 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~--~~~Ll~ 118 (231)
..+.+.|.+.+++.|++|+++++|++|..++ + + ..|.+. +| ++.||.||.|..... +.+++.
T Consensus 149 ~~l~~aL~~~~~~~Gv~i~~~~~V~~i~~~~---~--~-~~V~~~---~g-~i~ad~vV~A~G~~s~~l~~~~g 212 (393)
T PRK11728 149 RAVAEAMAELIQARGGEIRLGAEVTALDEHA---N--G-VVVRTT---QG-EYEARTLINCAGLMSDRLAKMAG 212 (393)
T ss_pred HHHHHHHHHHHHhCCCEEEcCCEEEEEEecC---C--e-EEEEEC---CC-EEEeCEEEECCCcchHHHHHHhC
Confidence 3678999999999999999999999998775 3 3 355552 44 789999999988653 444443
No 74
>PRK05675 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.55 E-value=0.077 Score=50.29 Aligned_cols=61 Identities=15% Similarity=0.140 Sum_probs=48.9
Q ss_pred cchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
+..+..+|.+.+++.|++|+.++.+++|..+++ | +|.||......+|+ .+.|++||+|+.-
T Consensus 125 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 187 (570)
T PRK05675 125 GHALLHTLYQGNLKNGTTFLNEWYAVDLVKNQD--G--AVVGVIAICIETGETVYIKSKATVLATGG 187 (570)
T ss_pred HHHHHHHHHHHHhccCCEEEECcEEEEEEEcCC--C--eEEEEEEEEcCCCcEEEEecCeEEECCCC
Confidence 346889999999999999999999999998643 6 89999764323454 5679999999773
No 75
>TIGR01811 sdhA_Bsu succinate dehydrogenase or fumarate reductase, flavoprotein subunit, Bacillus subtilis subgroup. This model represents the succinate dehydrogenase flavoprotein subunit as found in the low-GC Gram-positive bacteria and a few other lineages. This enzyme may act in a complete or partial TCA cycle, or act in the opposite direction as fumarate reductase. In some but not all species, succinate dehydrogenase and fumarate reductase may be encoded as separate isozymes.
Probab=95.49 E-value=0.082 Score=50.48 Aligned_cols=60 Identities=13% Similarity=0.101 Sum_probs=44.5
Q ss_pred cchhHHHHHHHHHHC----CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCC
Q 026885 46 DVYLSGPIRKYITDK----GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACD 109 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~----Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p 109 (231)
+..+...|.+.+++. |++|+++++|++|..+++ | +++||......+| ..+.|+.||+|+.
T Consensus 128 G~~i~~~L~~~~~~~~~~~gV~i~~~t~v~~Li~dd~--g--rV~GV~~~~~~~g~~~~i~AkaVVLATG 193 (603)
T TIGR01811 128 GQQLLLALDSALRRQIAAGLVEKYEGWEMLDIIVVDG--N--RARGIIARNLVTGEIETHSADAVILATG 193 (603)
T ss_pred hhHHHHHHHHHHHhhhccCCcEEEeCcEEEEEEEcCC--C--EEEEEEEEECCCCcEEEEEcCEEEECCC
Confidence 345666666666544 899999999999998653 6 8999987532234 3578999999976
No 76
>PRK12839 hypothetical protein; Provisional
Probab=95.48 E-value=0.071 Score=50.58 Aligned_cols=58 Identities=21% Similarity=0.250 Sum_probs=45.7
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCC
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p 109 (231)
..++..|.+..++.|++|+++++|++|..+++ | +|+||.... .+|+ ...++.||+|+.
T Consensus 214 ~~l~~~L~~~a~~~Gv~i~~~t~v~~Li~~~~--g--~V~GV~~~~-~~g~~~i~aak~VVLAtG 273 (572)
T PRK12839 214 TALTGRLLRSADDLGVDLRVSTSATSLTTDKN--G--RVTGVRVQG-PDGAVTVEATRGVVLATG 273 (572)
T ss_pred HHHHHHHHHHHHHCCCEEEcCCEEEEEEECCC--C--cEEEEEEEe-CCCcEEEEeCCEEEEcCC
Confidence 36888999999999999999999999988642 6 899998653 2343 234588988876
No 77
>COG1252 Ndh NADH dehydrogenase, FAD-containing subunit [Energy production and conversion]
Probab=95.48 E-value=0.037 Score=50.12 Aligned_cols=59 Identities=25% Similarity=0.207 Sum_probs=47.4
Q ss_pred CcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe-EEecCEEEEcCChh---hHhhh
Q 026885 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQADAYVAACDVP---GIKRL 116 (231)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~-~~~aD~vV~a~p~~---~~~~L 116 (231)
+++.+.+...++|+++|++|++|+.|++++-+ +|.+. +|+ .+++|.+|-|+... .++.|
T Consensus 207 ~~~~l~~~a~~~L~~~GV~v~l~~~Vt~v~~~----------~v~~~---~g~~~I~~~tvvWaaGv~a~~~~~~l 269 (405)
T COG1252 207 FPPKLSKYAERALEKLGVEVLLGTPVTEVTPD----------GVTLK---DGEEEIPADTVVWAAGVRASPLLKDL 269 (405)
T ss_pred CCHHHHHHHHHHHHHCCCEEEcCCceEEECCC----------cEEEc---cCCeeEecCEEEEcCCCcCChhhhhc
Confidence 44578999999999999999999999999654 36664 666 59999999998863 34555
No 78
>PRK06452 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.47 E-value=0.079 Score=50.15 Aligned_cols=59 Identities=15% Similarity=0.144 Sum_probs=48.0
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
..+.+.|.+.+++.|++|+.++.+++|..++ | +++||......+|+ .+.|++||+|+.-
T Consensus 136 ~~i~~~L~~~~~~~gv~i~~~~~~~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 196 (566)
T PRK06452 136 MALLHTLFERTSGLNVDFYNEWFSLDLVTDN---K--KVVGIVAMQMKTLTPFFFKTKAVVLATGG 196 (566)
T ss_pred HHHHHHHHHHHHhCCCEEEeCcEEEEEEEEC---C--EEEEEEEEECCCCeEEEEEeCeEEECCCc
Confidence 3578899999988999999999999999975 6 89999775322343 5679999999874
No 79
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=95.37 E-value=0.038 Score=50.48 Aligned_cols=67 Identities=18% Similarity=0.176 Sum_probs=55.9
Q ss_pred CcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCC
Q 026885 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLP 118 (231)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~ 118 (231)
+...+.+...+++++.|+++++++.+.+++.+.+ | +++.|.+. +|.+++||.||.-+...-..+++.
T Consensus 253 f~~~i~~~~~~y~e~kgVk~~~~t~~s~l~~~~~--G--ev~~V~l~---dg~~l~adlvv~GiG~~p~t~~~~ 319 (478)
T KOG1336|consen 253 FGPSIGQFYEDYYENKGVKFYLGTVVSSLEGNSD--G--EVSEVKLK---DGKTLEADLVVVGIGIKPNTSFLE 319 (478)
T ss_pred hhHHHHHHHHHHHHhcCeEEEEecceeecccCCC--C--cEEEEEec---cCCEeccCeEEEeecccccccccc
Confidence 3446788999999999999999999999999874 7 88899885 999999999998877654444444
No 80
>PRK05945 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.30 E-value=0.098 Score=49.60 Aligned_cols=60 Identities=18% Similarity=0.227 Sum_probs=48.0
Q ss_pred cchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
+..+.+.|.+.+++.|++|+.++.|++|..++ | ++.|+......+|+ .+.|+.||+|+.-
T Consensus 134 G~~i~~~L~~~~~~~gi~i~~~t~v~~L~~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVVlATGG 195 (575)
T PRK05945 134 GHAILHELVNNLRRYGVTIYDEWYVMRLILED---N--QAKGVVMYHIADGRLEVVRAKAVMFATGG 195 (575)
T ss_pred hHHHHHHHHHHHhhCCCEEEeCcEEEEEEEEC---C--EEEEEEEEEcCCCeEEEEECCEEEECCCC
Confidence 34688899999999999999999999999875 6 89998753222444 5789999999774
No 81
>PF00732 GMC_oxred_N: GMC oxidoreductase; InterPro: IPR000172 The glucose-methanol-choline (GMC) oxidoreductases are FAD flavoproteins oxidoreductases [, ]. These enzymes include a variety of proteins; choline dehydrogenase (CHD), methanol oxidase (MOX) and cellobiose dehydrogenase (1.1.99.18 from EC) [] which share a number of regions of sequence similarities. One of these regions, located in the N-terminal section, corresponds to the FAD ADP- binding domain. The function of the other conserved domains is not yet known.; GO: 0016614 oxidoreductase activity, acting on CH-OH group of donors, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 3Q9T_B 1B4V_A 3GYJ_A 1CBO_A 1B8S_A 1N4V_A 1N4W_A 3CNJ_A 1IJH_A 2GEW_A ....
Probab=95.30 E-value=0.065 Score=45.92 Aligned_cols=62 Identities=16% Similarity=0.237 Sum_probs=43.0
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC---eEEecCEEEEcCChhhHhhhC
Q 026885 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK---KVVQADAYVAACDVPGIKRLL 117 (231)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g---~~~~aD~vV~a~p~~~~~~Ll 117 (231)
|...++..|.+|+++++|++|.++++ ++ +++||++.....+ .++.++.||+++..-...+||
T Consensus 199 L~~a~~~~n~~l~~~~~V~~i~~~~~-~~--~a~gV~~~~~~~~~~~~~~~ak~VIlaAGai~Tp~LL 263 (296)
T PF00732_consen 199 LPPALKRPNLTLLTNARVTRIIFDGD-GG--RATGVEYVDNDGGVQRRIVAAKEVILAAGAIGTPRLL 263 (296)
T ss_dssp HHHHTTTTTEEEEESEEEEEEEEETT-ST--EEEEEEEEETTTSEEEEEEEEEEEEE-SHHHHHHHHH
T ss_pred cchhhccCCccEEcCcEEEEEeeecc-cc--ceeeeeeeecCCcceeeeccceeEEeccCCCCChhhh
Confidence 44444444899999999999988632 24 8999998764344 456789999998864444443
No 82
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=95.28 E-value=0.066 Score=36.73 Aligned_cols=41 Identities=20% Similarity=0.241 Sum_probs=34.1
Q ss_pred CcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEE
Q 026885 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS 91 (231)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~ 91 (231)
+.+.+.+.+.+.++++|++|++|+.|++|..+++ .++ |+++
T Consensus 38 ~~~~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~~-----~~~-V~~~ 78 (80)
T PF00070_consen 38 FDPDAAKILEEYLRKRGVEVHTNTKVKEIEKDGD-----GVE-VTLE 78 (80)
T ss_dssp SSHHHHHHHHHHHHHTTEEEEESEEEEEEEEETT-----SEE-EEEE
T ss_pred cCHHHHHHHHHHHHHCCCEEEeCCEEEEEEEeCC-----EEE-EEEe
Confidence 3446788899999999999999999999998873 355 7775
No 83
>TIGR03329 Phn_aa_oxid putative aminophosphonate oxidoreductase. This clade of sequences are members of the pfam01266 family of FAD-dependent oxidoreductases. Characterized proteins within this family include glycerol-3-phosphate dehydrogenase (1.1.99.5), sarcosine oxidase beta subunit (1.5.3.1) and a number of deaminating amino acid oxidases (1.4.-.-). These genes have been consistently observed in a genomic context including genes for the import and catabolism of 2-aminoethylphosphonate (AEP). If the substrate of this oxidoreductase is AEP itself, then it is probably acting in the manner of a deaminating oxidase, resulting in the same product (phosphonoacetaldehyde) as the transaminase PhnW (TIGR02326), but releasing ammonia instead of coupling to pyruvate:alanine. Alternatively, it is reasonable to suppose that the various ABC cassette transporters which are also associated with these loci allow the import of phosphonates closely related to AEP which may not be substrates for PhnW.
Probab=95.25 E-value=0.067 Score=49.18 Aligned_cols=53 Identities=19% Similarity=0.079 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+...|.+.++++|++|+.+++|++|+. + + ...|++. +| .+.||.||.|+...
T Consensus 184 ~l~~~L~~~a~~~Gv~i~~~t~V~~i~~-~---~---~~~v~t~---~g-~v~A~~VV~Atga~ 236 (460)
T TIGR03329 184 LLVRGLRRVALELGVEIHENTPMTGLEE-G---Q---PAVVRTP---DG-QVTADKVVLALNAW 236 (460)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEee-C---C---ceEEEeC---Cc-EEECCEEEEccccc
Confidence 6789999999999999999999999974 3 2 2445542 44 68999999997754
No 84
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=95.25 E-value=0.094 Score=47.12 Aligned_cols=62 Identities=8% Similarity=0.007 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh--hHhhhC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP--GIKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~--~~~~Ll 117 (231)
.+...+.+.++++|++++.+++|++|+..++ + ++.+|.+. +| .+.+|.||.++... .+.+++
T Consensus 184 ~l~~~l~~~a~~~Gv~~~~~~~V~~i~~~~~--~--~~~~v~t~---~g-~i~a~~vVvaagg~~~~l~~~~ 247 (407)
T TIGR01373 184 AVAWGYARGADRRGVDIIQNCEVTGFIRRDG--G--RVIGVETT---RG-FIGAKKVGVAVAGHSSVVAAMA 247 (407)
T ss_pred HHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--C--cEEEEEeC---Cc-eEECCEEEECCChhhHHHHHHc
Confidence 4567788899999999999999999986532 4 67777663 45 68999887776643 344443
No 85
>PLN02464 glycerol-3-phosphate dehydrogenase
Probab=95.23 E-value=0.097 Score=50.22 Aligned_cols=66 Identities=14% Similarity=0.076 Sum_probs=51.3
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEecc-CCCCcceEEEEEEEecCCCe--EEecCEEEEcCChh--hHhhhC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDK-AANAETYVKGLAMSKATDKK--VVQADAYVAACDVP--GIKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~-~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~~--~~~~Ll 117 (231)
.+...+++..+++|++|+.+++|++|..++ + | ++++|++.+..+|+ .+.||.||.|+.++ .+.+++
T Consensus 233 rl~~al~~~A~~~Ga~i~~~~~V~~l~~~~~~--g--~v~gV~v~d~~tg~~~~i~a~~VVnAaGaws~~l~~~~ 303 (627)
T PLN02464 233 RLNVALACTAALAGAAVLNYAEVVSLIKDEST--G--RIVGARVRDNLTGKEFDVYAKVVVNAAGPFCDEVRKMA 303 (627)
T ss_pred HHHHHHHHHHHhCCcEEEeccEEEEEEEecCC--C--cEEEEEEEECCCCcEEEEEeCEEEECCCHhHHHHHHhc
Confidence 678889999999999999999999999863 2 4 78888764322343 57999999998875 355555
No 86
>TIGR01377 soxA_mon sarcosine oxidase, monomeric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=95.22 E-value=0.079 Score=46.93 Aligned_cols=54 Identities=15% Similarity=0.041 Sum_probs=42.6
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+.+.+.+.+++.|++++.+++|++|..++ + ++ .|++ ++.++.||.||.++...
T Consensus 146 ~~~~~l~~~~~~~g~~~~~~~~V~~i~~~~---~--~~-~v~~----~~~~i~a~~vV~aaG~~ 199 (380)
T TIGR01377 146 KALRALQELAEAHGATVRDGTKVVEIEPTE---L--LV-TVKT----TKGSYQANKLVVTAGAW 199 (380)
T ss_pred HHHHHHHHHHHHcCCEEECCCeEEEEEecC---C--eE-EEEe----CCCEEEeCEEEEecCcc
Confidence 578888999999999999999999998875 3 33 4555 33478999988887753
No 87
>PRK07057 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.22 E-value=0.13 Score=49.08 Aligned_cols=60 Identities=13% Similarity=0.185 Sum_probs=47.8
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
..+...|.+..++.|++|+.++.|++|..+++ | ++.||......+|+ .+.|+.||+|+.-
T Consensus 148 ~~l~~~L~~~~~~~gi~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 209 (591)
T PRK07057 148 HALLHTLYQQNVAAKTQFFVEWMALDLIRDAD--G--DVLGVTALEMETGDVYILEAKTTLFATGG 209 (591)
T ss_pred HHHHHHHHHHHHhcCCEEEeCcEEEEEEEcCC--C--eEEEEEEEEcCCCeEEEEECCeEEECCCC
Confidence 45888999999999999999999999998742 6 89999764322454 5679999999763
No 88
>PRK12837 3-ketosteroid-delta-1-dehydrogenase; Provisional
Probab=95.21 E-value=0.088 Score=49.21 Aligned_cols=57 Identities=18% Similarity=0.246 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecC-EEEEcCC
Q 026885 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQAD-AYVAACD 109 (231)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD-~vV~a~p 109 (231)
.+...+.+.++++ |++|+++++|++|..++ | +|+||+....+....+.|+ .||+|+.
T Consensus 174 ~l~~~l~~~~~~~~gv~i~~~t~~~~Li~~~---g--~v~Gv~~~~~g~~~~i~A~k~VIlAtG 232 (513)
T PRK12837 174 ALIGRFLAALARFPNARLRLNTPLVELVVED---G--RVVGAVVERGGERRRVRARRGVLLAAG 232 (513)
T ss_pred HHHHHHHHHHHhCCCCEEEeCCEEEEEEecC---C--EEEEEEEEECCcEEEEEeCceEEEeCC
Confidence 4777877777765 99999999999999875 6 8999987532122356786 6777766
No 89
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=95.04 E-value=0.38 Score=43.12 Aligned_cols=63 Identities=16% Similarity=0.107 Sum_probs=51.5
Q ss_pred hhHHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-HhhhCC
Q 026885 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~Ll~ 118 (231)
.+.+.|.+.+++.+ ++++++++|+.++.+++ .+. ++++ .+|+++.||.+|-|=..+. +.+.+.
T Consensus 105 ~l~~~L~~~~~~~~~v~~~~~~~v~~~~~~~~-----~v~-v~l~--~dG~~~~a~llVgADG~~S~vR~~~~ 169 (387)
T COG0654 105 DLLNALLEAARALPNVTLRFGAEVEAVEQDGD-----GVT-VTLS--FDGETLDADLLVGADGANSAVRRAAG 169 (387)
T ss_pred HHHHHHHHHHhhCCCcEEEcCceEEEEEEcCC-----ceE-EEEc--CCCcEEecCEEEECCCCchHHHHhcC
Confidence 57889999999988 89999999999999973 455 6663 2788999999999988764 666666
No 90
>PRK06263 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=95.03 E-value=0.11 Score=48.89 Aligned_cols=60 Identities=12% Similarity=0.057 Sum_probs=47.4
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
..+.+.|.+.+++.|++|++++.|++|..+++ + ++.|+......+|+ .+.|+.||+|+.-
T Consensus 134 ~~i~~~L~~~~~~~gv~i~~~t~v~~Li~~~~--~--~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 195 (543)
T PRK06263 134 HEMMMGLMEYLIKERIKILEEVMAIKLIVDEN--R--EVIGAIFLDLRNGEIFPIYAKATILATGG 195 (543)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeeEEeCC--c--EEEEEEEEECCCCcEEEEEcCcEEECCCC
Confidence 46788999999999999999999999998762 4 69998654212443 5789999999874
No 91
>PRK08275 putative oxidoreductase; Provisional
Probab=94.97 E-value=0.12 Score=48.83 Aligned_cols=60 Identities=15% Similarity=0.149 Sum_probs=47.8
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
..+.+.|.+.+++.|++|+.++.|++|..+++ | ++.||......+|+ .+.|+.||+|+.-
T Consensus 137 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG 198 (554)
T PRK08275 137 HDIKKVLYRQLKRARVLITNRIMATRLLTDAD--G--RVAGALGFDCRTGEFLVIRAKAVILCCGA 198 (554)
T ss_pred HHHHHHHHHHHHHCCCEEEcceEEEEEEEcCC--C--eEEEEEEEecCCCcEEEEECCEEEECCCC
Confidence 35789999999999999999999999998742 6 89998754222454 5789999998774
No 92
>PRK08958 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.96 E-value=0.15 Score=48.53 Aligned_cols=61 Identities=13% Similarity=0.066 Sum_probs=48.1
Q ss_pred cchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
+..|...|.+.+++.|++|++++.|++|..+++ | ++.||...+..+|+ .+.|++||+|+.-
T Consensus 142 G~~i~~~L~~~~~~~gi~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 204 (588)
T PRK08958 142 GHALLHTLYQQNLKNHTTIFSEWYALDLVKNQD--G--AVVGCTAICIETGEVVYFKARATVLATGG 204 (588)
T ss_pred HHHHHHHHHHHhhhcCCEEEeCcEEEEEEECCC--C--EEEEEEEEEcCCCcEEEEEcCeEEECCCC
Confidence 346888999988899999999999999998642 6 89999764222454 5679999999773
No 93
>PRK04176 ribulose-1,5-biphosphate synthetase; Provisional
Probab=94.87 E-value=0.12 Score=44.02 Aligned_cols=61 Identities=16% Similarity=0.226 Sum_probs=48.1
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEec--------CCCeEEecCEEEEcCChh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--------TDKKVVQADAYVAACDVP 111 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~--------~~g~~~~aD~vV~a~p~~ 111 (231)
..+.+.|.+..++.|++|+++++|+.+..+++ + ++.|+.+... .+..++.|+.||.|+...
T Consensus 104 ~~l~~~L~~~A~~~Gv~I~~~t~V~dl~~~~~--g--~V~Gvv~~~~~v~~~g~~~~~~~i~Ak~VI~ATG~~ 172 (257)
T PRK04176 104 VEAAAKLAAAAIDAGAKIFNGVSVEDVILRED--P--RVAGVVINWTPVEMAGLHVDPLTIEAKAVVDATGHD 172 (257)
T ss_pred HHHHHHHHHHHHHcCCEEEcCceeceeeEeCC--C--cEEEEEEccccccccCCCCCcEEEEcCEEEEEeCCC
Confidence 36788899999999999999999999998663 5 7888876411 123578999999998754
No 94
>PRK08205 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=94.85 E-value=0.14 Score=48.68 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=47.8
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccC-CCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKA-ANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~-~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
..+.+.|.+.+++.|++|+.++.|++|..+++ ++| ++.|+......+|+ .+.|+.||+|+.-
T Consensus 140 ~~i~~~L~~~~~~~gv~i~~~~~v~~Li~~~~~~~g--~v~Gv~~~~~~~g~~~~i~AkaVVLATGG 204 (583)
T PRK08205 140 HMILQTLYQNCVKHGVEFFNEFYVLDLLLTETPSGP--VAAGVVAYELATGEIHVFHAKAVVFATGG 204 (583)
T ss_pred HHHHHHHHHHHHhcCCEEEeCCEEEEEEecCCccCC--cEEEEEEEEcCCCeEEEEEeCeEEECCCC
Confidence 46888999999999999999999999998640 004 89998763222454 5789999999774
No 95
>PRK05257 malate:quinone oxidoreductase; Validated
Probab=94.84 E-value=0.13 Score=47.87 Aligned_cols=60 Identities=13% Similarity=0.162 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~~~ 112 (231)
.+.+.|.+.+++.| ++|+++++|++|..+++ + + +.+.+.+..+|+ ++.||+||.++..+.
T Consensus 184 ~l~~aL~~~a~~~Ggv~i~~~teV~~I~~~~d--g--~-~~v~~~~~~~G~~~~i~A~~VVvaAGg~s 246 (494)
T PRK05257 184 ALTRQLVGYLQKQGNFELQLGHEVRDIKRNDD--G--S-WTVTVKDLKTGEKRTVRAKFVFIGAGGGA 246 (494)
T ss_pred HHHHHHHHHHHhCCCeEEEeCCEEEEEEECCC--C--C-EEEEEEEcCCCceEEEEcCEEEECCCcch
Confidence 57889999999988 69999999999998652 4 2 334443112343 689999998888754
No 96
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=94.81 E-value=0.12 Score=46.11 Aligned_cols=54 Identities=15% Similarity=0.213 Sum_probs=44.0
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.+++.|++++++++|++|..++ + ...+.+. +|+++++|.||.++..
T Consensus 184 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~---~---~~~v~~~---~g~~i~~D~vI~a~G~ 237 (377)
T PRK04965 184 EVSSRLQHRLTEMGVHLLLKSQLQGLEKTD---S---GIRATLD---SGRSIEVDAVIAAAGL 237 (377)
T ss_pred HHHHHHHHHHHhCCCEEEECCeEEEEEccC---C---EEEEEEc---CCcEEECCEEEECcCC
Confidence 456778899999999999999999998765 2 2346553 7889999999999775
No 97
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=94.80 E-value=0.12 Score=47.14 Aligned_cols=55 Identities=22% Similarity=0.331 Sum_probs=43.7
Q ss_pred cchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.+.++++|++|+++++|++|..+ + ++..+.+ +++.+.+|.||.++..
T Consensus 190 ~~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~----~--~~~~v~~----~~~~i~~d~vi~a~G~ 244 (444)
T PRK09564 190 DKEITDVMEEELRENGVELHLNEFVKSLIGE----D--KVEGVVT----DKGEYEADVVIVATGV 244 (444)
T ss_pred CHHHHHHHHHHHHHCCCEEEcCCEEEEEecC----C--cEEEEEe----CCCEEEcCEEEECcCC
Confidence 4467788899999999999999999999643 3 4555654 5557999999998875
No 98
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=94.80 E-value=0.092 Score=51.67 Aligned_cols=55 Identities=20% Similarity=0.224 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
...+.+.+.++++|++|+++++|++|.-++ ++.+|.+. +|+.+++|.||.++...
T Consensus 183 ~~~~~l~~~l~~~GV~v~~~~~v~~i~~~~------~~~~v~~~---dG~~i~~D~Vi~a~G~~ 237 (785)
T TIGR02374 183 TAGRLLQRELEQKGLTFLLEKDTVEIVGAT------KADRIRFK---DGSSLEADLIVMAAGIR 237 (785)
T ss_pred HHHHHHHHHHHHcCCEEEeCCceEEEEcCC------ceEEEEEC---CCCEEEcCEEEECCCCC
Confidence 446678889999999999999999997543 56778774 88899999999998853
No 99
>PTZ00139 Succinate dehydrogenase [ubiquinone] flavoprotein subunit; Provisional
Probab=94.75 E-value=0.17 Score=48.44 Aligned_cols=59 Identities=12% Similarity=0.115 Sum_probs=47.0
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCC
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACD 109 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p 109 (231)
..+...|.+.+++.|++|+.+++|++|..+++ | ++.||......+|+ .+.|++||+|+.
T Consensus 166 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVVLATG 226 (617)
T PTZ00139 166 HAMLHTLYGQSLKYDCNFFIEYFALDLIMDED--G--ECRGVIAMSMEDGSIHRFRAHYTVIATG 226 (617)
T ss_pred HHHHHHHHHHHHhCCCEEEeceEEEEEEECCC--C--EEEEEEEEECCCCeEEEEECCcEEEeCC
Confidence 46889999999999999999999999998432 6 89998764322454 567999999984
No 100
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=94.74 E-value=0.089 Score=47.85 Aligned_cols=53 Identities=17% Similarity=0.168 Sum_probs=42.9
Q ss_pred CcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
+++.+.+.+.+.|+++|++|+++++|+++.-+ +|.+. +|+++++|.+|.+...
T Consensus 226 ~~~~~~~~~~~~L~~~gV~v~~~~~v~~v~~~----------~v~~~---~g~~i~~d~vi~~~G~ 278 (424)
T PTZ00318 226 FDQALRKYGQRRLRRLGVDIRTKTAVKEVLDK----------EVVLK---DGEVIPTGLVVWSTGV 278 (424)
T ss_pred CCHHHHHHHHHHHHHCCCEEEeCCeEEEEeCC----------EEEEC---CCCEEEccEEEEccCC
Confidence 33457888999999999999999999998522 25564 7889999999999764
No 101
>PRK10157 putative oxidoreductase FixC; Provisional
Probab=94.69 E-value=0.13 Score=47.00 Aligned_cols=56 Identities=14% Similarity=0.189 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
.|-+.|.+.+++.|++|+.+++|++|..++ + ++.++.. +|+.+.||.||.|.....
T Consensus 109 ~fD~~L~~~a~~~Gv~i~~~~~V~~i~~~~---g--~v~~v~~----~g~~i~A~~VI~A~G~~s 164 (428)
T PRK10157 109 KFDAWLMEQAEEAGAQLITGIRVDNLVQRD---G--KVVGVEA----DGDVIEAKTVILADGVNS 164 (428)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEEeC---C--EEEEEEc----CCcEEECCEEEEEeCCCH
Confidence 345668888889999999999999998776 5 5655543 677899999999987643
No 102
>PRK06116 glutathione reductase; Validated
Probab=94.61 E-value=0.13 Score=47.03 Aligned_cols=56 Identities=14% Similarity=0.160 Sum_probs=44.4
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
..+.+.+.+.++++|++|+++++|++|+.+++ + ++ .+.+. +|+++++|.||.++..
T Consensus 208 ~~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~~--g--~~-~v~~~---~g~~i~~D~Vv~a~G~ 263 (450)
T PRK06116 208 PDIRETLVEEMEKKGIRLHTNAVPKAVEKNAD--G--SL-TLTLE---DGETLTVDCLIWAIGR 263 (450)
T ss_pred HHHHHHHHHHHHHCCcEEECCCEEEEEEEcCC--c--eE-EEEEc---CCcEEEeCEEEEeeCC
Confidence 35678899999999999999999999987652 3 22 35553 7788999999999764
No 103
>PLN00128 Succinate dehydrogenase [ubiquinone] flavoprotein subunit
Probab=94.60 E-value=0.18 Score=48.47 Aligned_cols=60 Identities=10% Similarity=0.132 Sum_probs=47.8
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
..+.+.|.+.+++.|++|+.++.+.+|..+++ | ++.||......+|+ .+.|++||+|+.-
T Consensus 187 ~~i~~~L~~~a~~~gv~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 248 (635)
T PLN00128 187 HAMLHTLYGQAMKHNTQFFVEYFALDLIMDSD--G--ACQGVIALNMEDGTLHRFRAHSTILATGG 248 (635)
T ss_pred HHHHHHHHHHHHhCCCEEEEeeEEEEEEEcCC--C--EEEEEEEEEcCCCeEEEEEcCeEEECCCC
Confidence 35789999999999999999999999998742 6 89999764322453 5679999999773
No 104
>PRK07512 L-aspartate oxidase; Provisional
Probab=94.58 E-value=0.11 Score=48.64 Aligned_cols=57 Identities=18% Similarity=0.102 Sum_probs=45.9
Q ss_pred chhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
..+.+.|.+.++++ |++|+.+++|++|..++ | ++.||.+.. +++ .+.|+.||+|+.-
T Consensus 136 ~~l~~~L~~~~~~~~gV~i~~~~~v~~Li~~~---g--~v~Gv~~~~--~~~~~~i~Ak~VVLATGG 195 (513)
T PRK07512 136 AAIMRALIAAVRATPSITVLEGAEARRLLVDD---G--AVAGVLAAT--AGGPVVLPARAVVLATGG 195 (513)
T ss_pred HHHHHHHHHHHHhCCCCEEEECcChhheeecC---C--EEEEEEEEe--CCeEEEEECCEEEEcCCC
Confidence 36888999998876 89999999999998765 6 899987652 232 5789999999774
No 105
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=94.56 E-value=0.13 Score=51.03 Aligned_cols=57 Identities=19% Similarity=0.212 Sum_probs=45.8
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
...+.+.+.|+++|++|+++++|++|.-+++ + ....+.+. +|+.+++|.||.++...
T Consensus 188 ~~~~~l~~~L~~~GV~v~~~~~v~~I~~~~~--~--~~~~v~~~---dG~~i~~D~Vv~A~G~r 244 (847)
T PRK14989 188 MGGEQLRRKIESMGVRVHTSKNTLEIVQEGV--E--ARKTMRFA---DGSELEVDFIVFSTGIR 244 (847)
T ss_pred HHHHHHHHHHHHCCCEEEcCCeEEEEEecCC--C--ceEEEEEC---CCCEEEcCEEEECCCcc
Confidence 4567789999999999999999999976542 2 34566664 88899999999998853
No 106
>PRK10015 oxidoreductase; Provisional
Probab=94.46 E-value=0.21 Score=45.62 Aligned_cols=56 Identities=14% Similarity=0.186 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
.|-+.|.+.+++.|++|+.+++|+.|..++ + ++.++.. +++.+.||.||.|.....
T Consensus 109 ~fd~~L~~~a~~~Gv~i~~~~~V~~i~~~~---~--~v~~v~~----~~~~i~A~~VI~AdG~~s 164 (429)
T PRK10015 109 RLDPWLMEQAEQAGAQFIPGVRVDALVREG---N--KVTGVQA----GDDILEANVVILADGVNS 164 (429)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeC---C--EEEEEEe----CCeEEECCEEEEccCcch
Confidence 344557888899999999999999998775 4 6777654 566899999999977643
No 107
>TIGR00551 nadB L-aspartate oxidase. L-aspartate oxidase is the B protein, NadB, of the quinolinate synthetase complex. Quinolinate synthetase makes a precursor of the pyridine nucleotide portion of NAD. This model identifies proteins that cluster as L-aspartate oxidase (a flavoprotein difficult to separate from the set of closely related flavoprotein subunits of succinate dehydrogenase and fumarate reductase) by both UPGMA and neighbor-joining trees. The most distant protein accepted as an L-aspartate oxidase (NadB), that from Pyrococcus horikoshii, not only clusters with other NadB but is just one gene away from NadA.
Probab=94.39 E-value=0.17 Score=46.97 Aligned_cols=60 Identities=17% Similarity=0.065 Sum_probs=47.0
Q ss_pred chhHHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 47 VYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 47 ~~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
..+.+.|.+.+++ .|++|+.+++|++|..++ + ++.|+.+........+.|+.||+|+.-.
T Consensus 128 ~~l~~~L~~~~~~~~gi~i~~~~~v~~l~~~~---g--~v~Gv~~~~~~~~~~i~A~~VVlAtGG~ 188 (488)
T TIGR00551 128 REVITTLVKKALNHPNIRIIEGENALDLLIET---G--RVVGVWVWNRETVETCHADAVVLATGGA 188 (488)
T ss_pred HHHHHHHHHHHHhcCCcEEEECeEeeeeeccC---C--EEEEEEEEECCcEEEEEcCEEEECCCcc
Confidence 3678899999988 699999999999999875 5 7888877531111467899999998753
No 108
>PRK08626 fumarate reductase flavoprotein subunit; Provisional
Probab=94.34 E-value=0.24 Score=47.85 Aligned_cols=58 Identities=14% Similarity=0.012 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
.+...|.+.+++.|++|+.+++|++|..++ | ++.|+.+....+|+ .+.|+.||+|+.-
T Consensus 159 ~l~~~L~~~~~~~gv~i~~~~~~~~Li~~~---g--~v~Gv~~~~~~~G~~~~i~AkaVVLATGG 218 (657)
T PRK08626 159 TMLYAVDNEAIKLGVPVHDRKEAIALIHDG---K--RCYGAVVRCLITGELRAYVAKATLIATGG 218 (657)
T ss_pred HHHHHHHHHHHhCCCEEEeeEEEEEEEEEC---C--EEEEEEEEEcCCCcEEEEEcCeEEECCCc
Confidence 466788888899999999999999999875 6 89998775323554 4579999999873
No 109
>PRK08401 L-aspartate oxidase; Provisional
Probab=94.33 E-value=0.2 Score=46.20 Aligned_cols=56 Identities=18% Similarity=0.106 Sum_probs=46.3
Q ss_pred cchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
+..+.+.|.+.+++.|++++.+ .|+.|..++ | ++.||.. +|+.+.+|.||+|+.-.
T Consensus 119 G~~i~~~L~~~~~~~gv~i~~~-~v~~l~~~~---g--~v~Gv~~----~g~~i~a~~VVLATGG~ 174 (466)
T PRK08401 119 GKHIIKILYKHARELGVNFIRG-FAEELAIKN---G--KAYGVFL----DGELLKFDATVIATGGF 174 (466)
T ss_pred hHHHHHHHHHHHHhcCCEEEEe-EeEEEEeeC---C--EEEEEEE----CCEEEEeCeEEECCCcC
Confidence 3468999999999999999876 899998765 5 7888876 67788999999998753
No 110
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=94.29 E-value=0.21 Score=44.96 Aligned_cols=59 Identities=15% Similarity=0.164 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCC--CeEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD--KKVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~--g~~~~aD~vV~a~p~~~ 112 (231)
.+...+.+.+++.|++|+.+++|++|..++ + .+ .+.+..+.. +..++||.||.|+.+..
T Consensus 198 ~~~~~l~~~a~~~G~~i~~~~~V~~i~~~~---~--~~-~v~~~~~~~~~~~~i~a~~vV~a~G~~s 258 (410)
T PRK12409 198 KFTTGLAAACARLGVQFRYGQEVTSIKTDG---G--GV-VLTVQPSAEHPSRTLEFDGVVVCAGVGS 258 (410)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEeC---C--EE-EEEEEcCCCCccceEecCEEEECCCcCh
Confidence 567888999999999999999999998765 3 33 343331111 23689999999988653
No 111
>PRK07333 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=94.23 E-value=0.19 Score=44.85 Aligned_cols=61 Identities=20% Similarity=0.157 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh-hHhhhC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~-~~~~Ll 117 (231)
.+.+.|.+.+++.|++|+.+++|++|+.++ + . ..|.+. +|+++.||.||.|...+ .+.+.+
T Consensus 112 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~---~--~-v~v~~~---~g~~~~ad~vI~AdG~~S~vr~~~ 173 (403)
T PRK07333 112 VLINALRKRAEALGIDLREATSVTDFETRD---E--G-VTVTLS---DGSVLEARLLVAADGARSKLRELA 173 (403)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcC---C--E-EEEEEC---CCCEEEeCEEEEcCCCChHHHHHc
Confidence 567888999999999999999999998776 3 2 345553 77889999999998765 355544
No 112
>PRK08773 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Validated
Probab=94.16 E-value=0.19 Score=44.96 Aligned_cols=61 Identities=18% Similarity=0.195 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh-hHhhhC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~-~~~~Ll 117 (231)
.+.+.|.+.+++.|++++.+++|++++.++ + .+ .|++. +|+++.||.||.|...+ .+.+.+
T Consensus 114 ~l~~~L~~~~~~~gv~i~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~a~~vV~AdG~~S~vr~~~ 175 (392)
T PRK08773 114 LLVDRLWAALHAAGVQLHCPARVVALEQDA---D--RV-RLRLD---DGRRLEAALAIAADGAASTLRELA 175 (392)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeEEEEEecC---C--eE-EEEEC---CCCEEEeCEEEEecCCCchHHHhh
Confidence 567888899999999999999999999876 3 33 35553 67889999999998865 355554
No 113
>PRK07395 L-aspartate oxidase; Provisional
Probab=94.12 E-value=0.23 Score=46.95 Aligned_cols=60 Identities=7% Similarity=0.056 Sum_probs=46.9
Q ss_pred cchhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 46 DVYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
+..+.+.|.+.++++ |++|+++++|++|..+++ +| ++.||.... +|+ .+.|+.||+|+.-
T Consensus 133 G~~i~~~L~~~~~~~~gi~i~~~~~v~~Li~~~~-~g--~v~Gv~~~~--~g~~~~i~AkaVILATGG 195 (553)
T PRK07395 133 GRAIVTTLTEQVLQRPNIEIISQALALSLWLEPE-TG--RCQGISLLY--QGQITWLRAGAVILATGG 195 (553)
T ss_pred hHHHHHHHHHHHhhcCCcEEEECcChhhheecCC-CC--EEEEEEEEE--CCeEEEEEcCEEEEcCCC
Confidence 346889999988765 999999999999998741 15 899997653 454 4689999999774
No 114
>PRK06854 adenylylsulfate reductase subunit alpha; Validated
Probab=94.09 E-value=0.24 Score=47.32 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=45.1
Q ss_pred hhHHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
.+...|.+.++++| ++|+.+++|.+|..++ + ++.||......+|+ .+.|+.||.|+.-
T Consensus 133 ~~~~~L~~~a~~~ggV~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (608)
T PRK06854 133 SYKPIVAEAAKKALGDNVLNRVFITDLLVDD---N--RIAGAVGFSVRENKFYVFKAKAVIVATGG 193 (608)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCEEEEEEEeC---C--EEEEEEEEEccCCcEEEEECCEEEECCCc
Confidence 56778888888876 9999999999998875 5 89998643212443 6789999999874
No 115
>PRK12834 putative FAD-binding dehydrogenase; Reviewed
Probab=94.04 E-value=0.22 Score=46.87 Aligned_cols=57 Identities=16% Similarity=0.234 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHH---C-CcEEEcCceeeEEEeccCCCCcceEEEEEEEe-cC-------------CC-eEEecCEEEEcC
Q 026885 48 YLSGPIRKYITD---K-GGRFHLRWGCREILYDKAANAETYVKGLAMSK-AT-------------DK-KVVQADAYVAAC 108 (231)
Q Consensus 48 ~l~~~l~~~l~~---~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~-~~-------------~g-~~~~aD~vV~a~ 108 (231)
.++++|.+.+++ . |++|++++++++|..++ | +|+||+... .. ++ ..+.|+.||+|+
T Consensus 149 ~~~~~l~~~~~~~~~~~gv~i~~~t~~~~Li~~~---g--~V~Gv~~~~~~~~~~~~~~~~~~~~~~~~~i~AkaVILAT 223 (549)
T PRK12834 149 GVVEPFERRVREAAARGLVRFRFRHRVDELVVTD---G--AVTGVRGTVLEPSDAERGEASSREVVGEFELRAQAVIVTS 223 (549)
T ss_pred HHHHHHHHHHHHHHHhCCceEEecCEeeEEEEeC---C--EEEEEEEEecccccccccccccccccceEEEecCEEEEeC
Confidence 467888777752 3 59999999999999875 6 899997521 01 12 357899999887
Q ss_pred C
Q 026885 109 D 109 (231)
Q Consensus 109 p 109 (231)
.
T Consensus 224 G 224 (549)
T PRK12834 224 G 224 (549)
T ss_pred C
Confidence 6
No 116
>TIGR01423 trypano_reduc trypanothione-disulfide reductase. Trypanothione, a glutathione-modified derivative of spermidine, is (in its reduced form) an important antioxidant found in trypanosomatids (Crithidia, Leishmania, Trypanosoma). This model describes trypanothione reductase, a possible antitrypanosomal drug target closely related to some forms of glutathione reductase.
Probab=94.01 E-value=0.2 Score=46.55 Aligned_cols=56 Identities=13% Similarity=0.118 Sum_probs=45.0
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
..+.+.+.+.++++|++|+++++|++|..+++ + ...+.+. +|+.+++|.||.++..
T Consensus 231 ~~~~~~l~~~L~~~GI~i~~~~~v~~i~~~~~--~---~~~v~~~---~g~~i~~D~vl~a~G~ 286 (486)
T TIGR01423 231 STLRKELTKQLRANGINIMTNENPAKVTLNAD--G---SKHVTFE---SGKTLDVDVVMMAIGR 286 (486)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCEEEEEEEcCC--c---eEEEEEc---CCCEEEcCEEEEeeCC
Confidence 46788999999999999999999999987642 3 3456553 6778999999998764
No 117
>PRK07804 L-aspartate oxidase; Provisional
Probab=93.99 E-value=0.23 Score=46.78 Aligned_cols=60 Identities=17% Similarity=0.116 Sum_probs=47.9
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe----cCCC-eEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK----ATDK-KVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~----~~~g-~~~~aD~vV~a~p~ 110 (231)
..+.+.|.+.+++.|++|+.+++|++|..+++ | ++.|+.+.. ..++ ..+.|+.||+|..-
T Consensus 144 ~~i~~~L~~~~~~~gV~i~~~~~v~~Li~~~~--g--~v~Gv~~~~~~~~~~~g~~~i~Ak~VIlATGG 208 (541)
T PRK07804 144 AEVQRALDAAVRADPLDIREHALALDLLTDGT--G--AVAGVTLHVLGEGSPDGVGAVHAPAVVLATGG 208 (541)
T ss_pred HHHHHHHHHHHHhCCCEEEECeEeeeeEEcCC--C--eEEEEEEEeccCCCCCcEEEEEcCeEEECCCC
Confidence 36889999999999999999999999998753 5 899987641 1233 46789999999874
No 118
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.99 E-value=0.21 Score=44.07 Aligned_cols=54 Identities=11% Similarity=0.033 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+...+.+.+++.|++|+.+++|++|..++ + . ..|.+. +| .+.||.||.|+...
T Consensus 150 ~~~~~~~~~~~~~gv~i~~~~~v~~i~~~~---~--~-~~v~~~---~g-~~~a~~vV~A~G~~ 203 (376)
T PRK11259 150 LAIKAHLRLAREAGAELLFNEPVTAIEADG---D--G-VTVTTA---DG-TYEAKKLVVSAGAW 203 (376)
T ss_pred HHHHHHHHHHHHCCCEEECCCEEEEEEeeC---C--e-EEEEeC---CC-EEEeeEEEEecCcc
Confidence 567778888889999999999999999876 3 2 345542 44 78999999998865
No 119
>TIGR00292 thiazole biosynthesis enzyme. This enzyme is involved in the biosynthesis of the thiamine precursor thiazole, and is repressed by thiamine.This family includes c-thi1, a Citrus gene induced during natural and ethylene induced fruit maturation and is highly homologous to plant and yeast thi genes involved in thiamine biosynthesis.
Probab=93.84 E-value=0.31 Score=41.33 Aligned_cols=67 Identities=10% Similarity=0.109 Sum_probs=50.2
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEec--------CCCeEEecCEEEEcCChh-hHhhhC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--------TDKKVVQADAYVAACDVP-GIKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~--------~~g~~~~aD~vV~a~p~~-~~~~Ll 117 (231)
.+.+.|.+..++.|++|+.+++|+.+..+++ + .++.||++... .+..+++|+.||.|+... .+.+++
T Consensus 101 el~~~L~~~a~e~GV~I~~~t~V~dli~~~~--~-~~V~GVv~~~~~v~~~g~~~d~~~i~Ak~VVdATG~~a~v~~~l 176 (254)
T TIGR00292 101 EFISTLASKALQAGAKIFNGTSVEDLITRDD--T-VGVAGVVINWSAIELAGLHVDPLTQRSRVVVDATGHDAEIVAVC 176 (254)
T ss_pred HHHHHHHHHHHHcCCEEECCcEEEEEEEeCC--C-CceEEEEeCCccccccCCCCCCEEEEcCEEEEeecCCchHHHHH
Confidence 5788899999999999999999999998762 2 15889876411 023578899999998864 344444
No 120
>PLN02507 glutathione reductase
Probab=93.80 E-value=0.24 Score=46.16 Aligned_cols=56 Identities=13% Similarity=0.100 Sum_probs=44.0
Q ss_pred cchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
...+.+.+.+.++++|++|+++++|++|..++ + + ..+.+ .+|+++++|.||.++..
T Consensus 243 d~~~~~~l~~~l~~~GI~i~~~~~V~~i~~~~---~--~-~~v~~---~~g~~i~~D~vl~a~G~ 298 (499)
T PLN02507 243 DDEMRAVVARNLEGRGINLHPRTNLTQLTKTE---G--G-IKVIT---DHGEEFVADVVLFATGR 298 (499)
T ss_pred CHHHHHHHHHHHHhCCCEEEeCCEEEEEEEeC---C--e-EEEEE---CCCcEEEcCEEEEeecC
Confidence 34567788889999999999999999998654 2 2 23444 36778999999999775
No 121
>TIGR01350 lipoamide_DH dihydrolipoamide dehydrogenase. The motif GGXCXXXGCXP near the N-terminus contains a redox-active disulfide.
Probab=93.80 E-value=0.29 Score=44.81 Aligned_cols=55 Identities=11% Similarity=0.078 Sum_probs=43.0
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~ 110 (231)
..+.+.+.+.+++.|++|+++++|++|..++ + ++. +.+. +| +.+++|.||.++..
T Consensus 211 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~---~--~v~-v~~~---~g~~~~i~~D~vi~a~G~ 267 (461)
T TIGR01350 211 AEVSKVVAKALKKKGVKILTNTKVTAVEKND---D--QVV-YENK---GGETETLTGEKVLVAVGR 267 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC---C--EEE-EEEe---CCcEEEEEeCEEEEecCC
Confidence 3567888999999999999999999998765 3 333 4443 45 57899999998875
No 122
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=93.78 E-value=0.26 Score=45.16 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=43.2
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC---eEEecCEEEEcCChh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK---KVVQADAYVAACDVP 111 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g---~~~~aD~vV~a~p~~ 111 (231)
..+.+.+.+.++++|++|++|++|++|..++ + . ..+.+. +| +.+++|.||.++...
T Consensus 213 ~~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~---~--~-v~v~~~---~gg~~~~i~~D~vi~a~G~~ 271 (462)
T PRK06416 213 KEISKLAERALKKRGIKIKTGAKAKKVEQTD---D--G-VTVTLE---DGGKEETLEADYVLVAVGRR 271 (462)
T ss_pred HHHHHHHHHHHHHcCCEEEeCCEEEEEEEeC---C--E-EEEEEE---eCCeeEEEEeCEEEEeeCCc
Confidence 3567889999999999999999999998765 2 2 234443 34 678999999997753
No 123
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=93.76 E-value=0.23 Score=44.61 Aligned_cols=53 Identities=13% Similarity=0.129 Sum_probs=41.8
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.++++|++|+++++|++|.. + + . ..+.+. +|+++.+|.||.++..
T Consensus 187 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~-~---~--~-~~v~l~---~g~~i~aD~Vv~a~G~ 239 (396)
T PRK09754 187 PVQRYLLQRHQQAGVRILLNNAIEHVVD-G---E--K-VELTLQ---SGETLQADVVIYGIGI 239 (396)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEEc-C---C--E-EEEEEC---CCCEEECCEEEECCCC
Confidence 3456688888999999999999999975 3 2 2 345553 7888999999999875
No 124
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=93.73 E-value=0.23 Score=45.53 Aligned_cols=56 Identities=13% Similarity=0.044 Sum_probs=44.4
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
..+.+.+.+.++++|++++++++|+++..++ + . ..+.+. +|+.+++|.||.++...
T Consensus 216 ~~~~~~l~~~l~~~gI~v~~~~~v~~i~~~~---~--~-~~v~~~---~g~~i~~D~vi~a~G~~ 271 (461)
T PRK05249 216 DEISDALSYHLRDSGVTIRHNEEVEKVEGGD---D--G-VIVHLK---SGKKIKADCLLYANGRT 271 (461)
T ss_pred HHHHHHHHHHHHHcCCEEEECCEEEEEEEeC---C--e-EEEEEC---CCCEEEeCEEEEeecCC
Confidence 4577889999999999999999999998765 2 2 234443 67789999999998753
No 125
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=93.72 E-value=0.22 Score=45.12 Aligned_cols=53 Identities=15% Similarity=0.121 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+.+.+.+.++++|++++++++|++|..++ ++ +.+. +|+++++|.+|.+++..
T Consensus 180 ~~~~~~~~~l~~~gV~v~~~~~v~~i~~~~------~~--v~~~---~g~~i~~D~vi~a~G~~ 232 (427)
T TIGR03385 180 EMNQIVEEELKKHEINLRLNEEVDSIEGEE------RV--KVFT---SGGVYQADMVILATGIK 232 (427)
T ss_pred HHHHHHHHHHHHcCCEEEeCCEEEEEecCC------CE--EEEc---CCCEEEeCEEEECCCcc
Confidence 467778899999999999999999997543 32 4443 78889999999998753
No 126
>PF01134 GIDA: Glucose inhibited division protein A; InterPro: IPR002218 GidA is a tRNA modification enzyme found in bacteria and mitochondria. Though its precise molecular function of these proteins is not known, it is involved in the 5-carboxymethylaminomethyl modification of the wobble uridine base in some tRNAs [, ]. Sequence variations in the human mitochondrial protein may influence the severity of aminoglycoside-induced deafness []. This entry is found in GidA and related proteins, such as the methylenetetrahydrofolate--tRNA-(uracil-5-)-methyltransferase enzyme TrmFO.; GO: 0050660 flavin adenine dinucleotide binding, 0008033 tRNA processing; PDB: 3CES_C 3CP2_A 3G05_A 2CUL_A 3CP8_A 2ZXI_B 2ZXH_A 3G5S_A 3G5R_A 3G5Q_A.
Probab=93.69 E-value=0.24 Score=44.77 Aligned_cols=54 Identities=20% Similarity=0.295 Sum_probs=43.7
Q ss_pred hhHHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.+++.. .+| ...+|+.|..++ + +|.||.+. +|+.+.+|.||.|+..
T Consensus 96 ~y~~~~~~~l~~~~nl~i-~~~~V~~l~~e~---~--~v~GV~~~---~g~~~~a~~vVlaTGt 150 (392)
T PF01134_consen 96 KYSRAMREKLESHPNLTI-IQGEVTDLIVEN---G--KVKGVVTK---DGEEIEADAVVLATGT 150 (392)
T ss_dssp HHHHHHHHHHHTSTTEEE-EES-EEEEEECT---T--EEEEEEET---TSEEEEECEEEE-TTT
T ss_pred HHHHHHHHHHhcCCCeEE-EEcccceEEecC---C--eEEEEEeC---CCCEEecCEEEEeccc
Confidence 56778889998854 566 578999999997 6 89999985 8999999999998776
No 127
>PRK07803 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.67 E-value=0.36 Score=46.32 Aligned_cols=59 Identities=19% Similarity=0.135 Sum_probs=46.6
Q ss_pred chhHHHHHHHHHHC--------C-----cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDK--------G-----GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~--------G-----g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
..+.++|.+.+++. | ++|+.+++|++|..++ | ++.|+......+|+ .+.|+.||+|+.-
T Consensus 138 ~~i~~~L~~~~~~~~~~~~~~~G~~~~~v~i~~~~~v~~L~~~~---g--~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 211 (626)
T PRK07803 138 LELIRTLQQKIVSLQQEDHAELGDYEARIKVFAECTITELLKDG---G--RIAGAFGYWRESGRFVLFEAPAVVLATGG 211 (626)
T ss_pred HHHHHHHHHHHHhhhccccccccCCcCceEEEeCCEEEEEEEEC---C--EEEEEEEEECCCCeEEEEEcCeEEECCCc
Confidence 36788899988877 7 9999999999999875 6 89998653222454 5789999999874
No 128
>TIGR02032 GG-red-SF geranylgeranyl reductase family. This model represents a subfamily which includes geranylgeranyl reductases involved in chlorophyll and bacteriochlorophyll biosynthesis as well as other related enzymes which may also act on geranylgeranyl groups or related substrates.
Probab=93.63 E-value=0.32 Score=41.05 Aligned_cols=62 Identities=11% Similarity=0.134 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-HhhhC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~Ll 117 (231)
.+.+.|.+.+++.|++++++++|+++..++ + ++ .+.+. .+++++++|.||.|...+. +.+.+
T Consensus 92 ~l~~~l~~~~~~~gv~~~~~~~v~~~~~~~---~--~~-~~~~~--~~~~~~~a~~vv~a~G~~s~~~~~~ 154 (295)
T TIGR02032 92 AFDEQLAERAQEAGAELRLGTTVLDVEIHD---D--RV-VVIVR--GGEGTVTAKIVIGADGSRSIVAKKL 154 (295)
T ss_pred HHHHHHHHHHHHcCCEEEeCcEEeeEEEeC---C--EE-EEEEc--CccEEEEeCEEEECCCcchHHHHhc
Confidence 567888999999999999999999998876 3 33 33332 2456899999999988753 54444
No 129
>PRK13339 malate:quinone oxidoreductase; Reviewed
Probab=93.60 E-value=0.38 Score=44.93 Aligned_cols=60 Identities=7% Similarity=-0.021 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~~~ 112 (231)
.+.+.+.+.+++ .|++|+++++|+.|..+++ + . +.+.+....+|+ +++||.||.++..+.
T Consensus 185 ~L~~aL~~~l~~~~Gv~i~~~~~V~~I~~~~d--~--~-w~v~v~~t~~g~~~~i~Ad~VV~AAGawS 247 (497)
T PRK13339 185 ALTRKLAKHLESHPNAQVKYNHEVVDLERLSD--G--G-WEVTVKDRNTGEKREQVADYVFIGAGGGA 247 (497)
T ss_pred HHHHHHHHHHHhCCCcEEEeCCEEEEEEECCC--C--C-EEEEEEecCCCceEEEEcCEEEECCCcch
Confidence 678889998865 5999999999999988732 3 2 334321112342 689999999988754
No 130
>KOG2820 consensus FAD-dependent oxidoreductase [General function prediction only]
Probab=93.58 E-value=0.29 Score=43.20 Aligned_cols=66 Identities=14% Similarity=0.075 Sum_probs=52.6
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhCCC
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLLPS 119 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll~~ 119 (231)
+.-+.+++..+++.||.|+-|..|..+.+.+. .+ ...+|.++ +|..+.|+.+|.|+.++.-+ |||.
T Consensus 153 ~kslk~~~~~~~~~G~i~~dg~~v~~~~~~~e-~~--~~v~V~Tt---~gs~Y~akkiI~t~GaWi~k-lL~~ 218 (399)
T KOG2820|consen 153 AKSLKALQDKARELGVIFRDGEKVKFIKFVDE-EG--NHVSVQTT---DGSIYHAKKIIFTVGAWINK-LLPT 218 (399)
T ss_pred HHHHHHHHHHHHHcCeEEecCcceeeEeeccC-CC--ceeEEEec---cCCeeecceEEEEecHHHHh-hcCc
Confidence 35578999999999999999999999997543 23 35567664 89889999999999987653 6664
No 131
>PRK06370 mercuric reductase; Validated
Probab=93.57 E-value=0.35 Score=44.46 Aligned_cols=57 Identities=11% Similarity=0.172 Sum_probs=42.8
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.++++|++|+++++|++|..+++ + ..+.+...++++.+++|.||.++..
T Consensus 213 ~~~~~l~~~l~~~GV~i~~~~~V~~i~~~~~--~----~~v~~~~~~~~~~i~~D~Vi~A~G~ 269 (463)
T PRK06370 213 DVAAAVREILEREGIDVRLNAECIRVERDGD--G----IAVGLDCNGGAPEITGSHILVAVGR 269 (463)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcCC--E----EEEEEEeCCCceEEEeCEEEECcCC
Confidence 4677889999999999999999999987652 2 2333322124567899999999875
No 132
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=93.57 E-value=0.3 Score=44.80 Aligned_cols=58 Identities=14% Similarity=0.051 Sum_probs=44.5
Q ss_pred cchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC-eEEecCEEEEcCChh
Q 026885 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVP 111 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g-~~~~aD~vV~a~p~~ 111 (231)
...+.+.+.+.++++|+++++|++|++|..+++ + ...+.+. +| +.+++|.||.++...
T Consensus 206 d~~~~~~~~~~l~~~gI~i~~~~~v~~i~~~~~--~---~~~v~~~---~g~~~i~~D~vi~a~G~~ 264 (450)
T TIGR01421 206 DSMISETITEEYEKEGINVHKLSKPVKVEKTVE--G---KLVIHFE---DGKSIDDVDELIWAIGRK 264 (450)
T ss_pred CHHHHHHHHHHHHHcCCEEEcCCEEEEEEEeCC--c---eEEEEEC---CCcEEEEcCEEEEeeCCC
Confidence 345778899999999999999999999986541 2 2345553 56 578999999998853
No 133
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=93.55 E-value=0.18 Score=48.65 Aligned_cols=55 Identities=11% Similarity=0.033 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
.+.+.|.+.+++ |++|+.+++|++|..++ + ++. |.+ .+|..+.||.||.|.....
T Consensus 409 ~l~~aL~~~a~~-Gv~i~~~~~V~~i~~~~---~--~~~-v~t---~~g~~~~ad~VV~A~G~~s 463 (662)
T PRK01747 409 ELCRALLALAGQ-QLTIHFGHEVARLERED---D--GWQ-LDF---AGGTLASAPVVVLANGHDA 463 (662)
T ss_pred HHHHHHHHhccc-CcEEEeCCEeeEEEEeC---C--EEE-EEE---CCCcEEECCEEEECCCCCc
Confidence 678999999999 99999999999999876 3 343 554 2666778999999988653
No 134
>PRK06069 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=93.55 E-value=0.4 Score=45.50 Aligned_cols=58 Identities=16% Similarity=0.128 Sum_probs=45.6
Q ss_pred hhHHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
.+.+.|.+.+++ .|++|+.++.|++|..++ | ++.|+......+|+ .+.|+.||+|+.-
T Consensus 138 ~i~~~L~~~~~~~~gv~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~Ak~VIlATGG 198 (577)
T PRK06069 138 YIMHTLYSRALRFDNIHFYDEHFVTSLIVEN---G--VFKGVTAIDLKRGEFKVFQAKAGIIATGG 198 (577)
T ss_pred HHHHHHHHHHHhcCCCEEEECCEEEEEEEEC---C--EEEEEEEEEcCCCeEEEEECCcEEEcCch
Confidence 478888888876 699999999999999875 6 89998754322454 5789999998774
No 135
>TIGR02053 MerA mercuric reductase. This model represents the mercuric reductase found in the mer operon for the detoxification of mercury compounds. MerA is a FAD-containing flavoprotein which reduces Hg(II) to Hg(0) utilizing NADPH.
Probab=93.50 E-value=0.35 Score=44.38 Aligned_cols=57 Identities=14% Similarity=0.147 Sum_probs=43.1
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.+++.|++|+++++|++|..++ + ...+.+...++++++++|.||.++..
T Consensus 208 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~---~---~~~v~~~~~~~~~~i~~D~ViiA~G~ 264 (463)
T TIGR02053 208 EISAAVEEALAEEGIEVVTSAQVKAVSVRG---G---GKIITVEKPGGQGEVEADELLVATGR 264 (463)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEcC---C---EEEEEEEeCCCceEEEeCEEEEeECC
Confidence 567888999999999999999999998764 2 23344432123468999999999774
No 136
>TIGR01984 UbiH 2-polyprenyl-6-methoxyphenol 4-hydroxylase. This model represents the FAD-dependent monoxygenase responsible for the second hydroxylation step in the aerobic ubiquinone bioynthetic pathway. The scope of this model is limited to the proteobacteria. This family is closely related to the UbiF hydroxylase which catalyzes the final hydroxylation step. The enzyme has also been named VisB due to a mutant VISible light sensitive phenotype.
Probab=93.47 E-value=0.27 Score=43.58 Aligned_cols=62 Identities=15% Similarity=0.203 Sum_probs=47.2
Q ss_pred hhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-HhhhCC
Q 026885 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~Ll~ 118 (231)
.+.+.|.+.+++. |++++++++|++|..++ + . ..|.+. +|+++.||.||.|...+. +.+.+.
T Consensus 106 ~l~~~L~~~~~~~~gv~~~~~~~v~~i~~~~---~--~-~~v~~~---~g~~~~ad~vV~AdG~~S~vr~~l~ 169 (382)
T TIGR01984 106 DLGQALLSRLALLTNIQLYCPARYKEIIRNQ---D--Y-VRVTLD---NGQQLRAKLLIAADGANSKVRELLS 169 (382)
T ss_pred HHHHHHHHHHHhCCCcEEEcCCeEEEEEEcC---C--e-EEEEEC---CCCEEEeeEEEEecCCChHHHHHcC
Confidence 4678888888884 99999999999998776 2 2 335443 677899999999988764 555543
No 137
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=93.47 E-value=0.29 Score=44.82 Aligned_cols=55 Identities=15% Similarity=0.145 Sum_probs=43.4
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
+.+.+.+.+.++++|++++++++|++|..+++ + ..+.+. +|+.+++|.||.++..
T Consensus 207 ~~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~~--~----~~v~~~---~g~~i~~D~viva~G~ 261 (446)
T TIGR01424 207 DDMRALLARNMEGRGIRIHPQTSLTSITKTDD--G----LKVTLS---HGEEIVADVVLFATGR 261 (446)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--e----EEEEEc---CCcEeecCEEEEeeCC
Confidence 45667888999999999999999999986542 2 234443 6778999999999775
No 138
>PRK12266 glpD glycerol-3-phosphate dehydrogenase; Reviewed
Probab=93.45 E-value=0.41 Score=44.74 Aligned_cols=59 Identities=14% Similarity=0.039 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~~~ 112 (231)
.+...+++..+++|++|+.+++|++|..++ + .++|.+.+..+| ..+.|+.||.|+.++.
T Consensus 156 rl~~~l~~~A~~~Ga~i~~~~~V~~i~~~~---~---~~~v~~~~~~~g~~~~i~a~~VVnAaG~wa 216 (508)
T PRK12266 156 RLVVLNARDAAERGAEILTRTRVVSARREN---G---LWHVTLEDTATGKRYTVRARALVNAAGPWV 216 (508)
T ss_pred HHHHHHHHHHHHcCCEEEcCcEEEEEEEeC---C---EEEEEEEEcCCCCEEEEEcCEEEECCCccH
Confidence 456677888899999999999999998775 3 356665421234 3689999999988743
No 139
>PF04820 Trp_halogenase: Tryptophan halogenase; InterPro: IPR006905 Tryptophan halogenase catalyses the chlorination of tryptophan to form 7-chlorotryptophan. This is the first step in the biosynthesis of pyrrolnitrin, an antibiotic with broad-spectrum anti-fungal activity. Tryptophan halogenase is NADH-dependent [].; PDB: 2PYX_B 2OAL_B 2E4G_A 2OAM_A 2OA1_B 2O9Z_A 3I3L_A 2AQJ_A 2ARD_A 2JKC_A ....
Probab=93.40 E-value=0.28 Score=45.22 Aligned_cols=57 Identities=12% Similarity=0.235 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
.+.+-|.+..+++|++++.++ |+++..+++ | .|++|++. +|++++||.||=|.....
T Consensus 155 ~fd~~L~~~A~~~Gv~~~~g~-V~~v~~~~~--g--~i~~v~~~---~g~~i~ad~~IDASG~~s 211 (454)
T PF04820_consen 155 KFDQFLRRHAEERGVEVIEGT-VVDVELDED--G--RITAVRLD---DGRTIEADFFIDASGRRS 211 (454)
T ss_dssp HHHHHHHHHHHHTT-EEEET--EEEEEE-TT--S--EEEEEEET---TSEEEEESEEEE-SGGG-
T ss_pred HHHHHHHHHHhcCCCEEEeCE-EEEEEEcCC--C--CEEEEEEC---CCCEEEEeEEEECCCccc
Confidence 577888999999999999885 888888874 6 89999884 899999999998887754
No 140
>PRK05714 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=93.37 E-value=0.3 Score=43.84 Aligned_cols=62 Identities=15% Similarity=0.111 Sum_probs=47.8
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~-~~~~Ll~ 118 (231)
.+.+.|.+.+++.|++|+.+++|++|+.+++ + +.|.+. +|+++.||.||.|-..+ .+.+++.
T Consensus 113 ~l~~~L~~~~~~~gv~v~~~~~v~~i~~~~~--~----v~v~~~---~g~~~~a~~vVgAdG~~S~vR~~lg 175 (405)
T PRK05714 113 VVQDALLERLHDSDIGLLANARLEQMRRSGD--D----WLLTLA---DGRQLRAPLVVAADGANSAVRRLAG 175 (405)
T ss_pred HHHHHHHHHHhcCCCEEEcCCEEEEEEEcCC--e----EEEEEC---CCCEEEeCEEEEecCCCchhHHhcC
Confidence 4567888888889999999999999987762 2 335553 78889999999988875 4556654
No 141
>PRK06834 hypothetical protein; Provisional
Probab=93.33 E-value=0.28 Score=45.61 Aligned_cols=62 Identities=10% Similarity=0.132 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-HhhhCC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~Ll~ 118 (231)
.+-+.|.+.+++.|++|+++++|++|+.+++ + ..+++. +|+++.||.||.+...+. +.+.+.
T Consensus 101 ~le~~L~~~l~~~gv~i~~~~~v~~v~~~~~--~----v~v~~~---~g~~i~a~~vVgADG~~S~vR~~lg 163 (488)
T PRK06834 101 HIERILAEWVGELGVPIYRGREVTGFAQDDT--G----VDVELS---DGRTLRAQYLVGCDGGRSLVRKAAG 163 (488)
T ss_pred HHHHHHHHHHHhCCCEEEcCCEEEEEEEcCC--e----EEEEEC---CCCEEEeCEEEEecCCCCCcHhhcC
Confidence 4556788888999999999999999998862 2 235443 677899999998877653 555553
No 142
>PF13454 NAD_binding_9: FAD-NAD(P)-binding
Probab=93.23 E-value=0.22 Score=38.87 Aligned_cols=94 Identities=18% Similarity=0.072 Sum_probs=53.0
Q ss_pred HcCCCCCCcccHHHHH--HHHHHHHhcccc------c-eeeeeCCCCcchhHHHHHHHHHH--CCcEEE-cCceeeEEEe
Q 026885 8 ALGFIDCDNISARCML--TIFALFATKTEA------S-LLRMLKGSPDVYLSGPIRKYITD--KGGRFH-LRWGCREILY 75 (231)
Q Consensus 8 a~~~~~~~~~Sa~~~~--~~l~~~~~~~~~------~-~~g~~~g~~~~~l~~~l~~~l~~--~Gg~i~-~~~~V~~i~~ 75 (231)
..+|.+.+.+|...-- .-|...+..... . .--.||.-+++.+-+.+.+.++. .|++|. .+.+|+.|..
T Consensus 50 ~llN~~a~~~s~~~~~~~~~f~~Wl~~~~~~~~~~~~~~~f~pR~~~G~YL~~~~~~~~~~~~~~i~v~~~~~~V~~i~~ 129 (156)
T PF13454_consen 50 HLLNTPADQMSLFPDDPGDDFVDWLRANGADEAEEIDPDDFPPRALFGEYLRDRFDRLLARLPAGITVRHVRAEVVDIRR 129 (156)
T ss_pred HhhcccccccccccccCCCCHHHHHHhcCcccccccccccCCCHHHHHHHHHHHHHHHHHhhcCCcEEEEEeeEEEEEEE
Confidence 4577888777775421 122222221211 0 11112333444444444444443 466544 6789999999
Q ss_pred ccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 76 DKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 76 ~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.++ + ..+.+ .+|..+.+|+||+|+..
T Consensus 130 ~~~--~----~~v~~---~~g~~~~~d~VvLa~Gh 155 (156)
T PF13454_consen 130 DDD--G----YRVVT---ADGQSIRADAVVLATGH 155 (156)
T ss_pred cCC--c----EEEEE---CCCCEEEeCEEEECCCC
Confidence 873 3 45555 38899999999999764
No 143
>TIGR01988 Ubi-OHases Ubiquinone biosynthesis hydroxylase, UbiH/UbiF/VisC/COQ6 family. This model represents a family of FAD-dependent hydroxylases (monooxygenases) which are all believed to act in the aerobic ubiquinone biosynthesis pathway. A separate set of hydroxylases, as yet undiscovered, are believed to be active under anaerobic conditions. In E. coli three enzyme activities have been described, UbiB (which acts first at position 6, see TIGR01982), UbiH (which acts at position 4, ) and UbiF (which acts at position 5). UbiH and UbiF are similar to one another and form the basis of this subfamily. Interestingly, E. coli contains another hydroxylase gene, called visC, that is highly similar to UbiF, adjacent to UbiH and, when mutated, results in a phenotype similar to that of UbiH (which has also been named visB). Several other species appear to have three homologs in this family, although they assort themselves differently on phylogenetic trees (e.g. Xylella and Mesorhizobium) maki
Probab=93.16 E-value=0.35 Score=42.74 Aligned_cols=61 Identities=15% Similarity=0.125 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh-hHhhhC
Q 026885 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~-~~~~Ll 117 (231)
.+.+.|.+.+++.| ++|+.+++|++|..++ + .+ .+.+. +|+++.+|.||.+-..+ .+.+.+
T Consensus 107 ~l~~~L~~~~~~~~~~~v~~~~~v~~i~~~~---~--~~-~v~~~---~g~~~~~~~vi~adG~~S~vr~~l 169 (385)
T TIGR01988 107 VLQQALWERLQEYPNVTLLCPARVVELPRHS---D--HV-ELTLD---DGQQLRARLLVGADGANSKVRQLA 169 (385)
T ss_pred HHHHHHHHHHHhCCCcEEecCCeEEEEEecC---C--ee-EEEEC---CCCEEEeeEEEEeCCCCCHHHHHc
Confidence 46788888898988 9999999999998876 3 33 35553 78889999999887765 354544
No 144
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=93.04 E-value=0.4 Score=40.67 Aligned_cols=55 Identities=13% Similarity=0.033 Sum_probs=43.5
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
..+.+.+.+.+++.|+++++ ++|++|..++ + ...|.+. +++++.+|.+|.|+...
T Consensus 57 ~~~~~~l~~~~~~~gv~~~~-~~v~~v~~~~---~---~~~v~~~---~~~~~~~d~liiAtG~~ 111 (300)
T TIGR01292 57 PELMEKMKEQAVKFGAEIIY-EEVIKVDLSD---R---PFKVKTG---DGKEYTAKAVIIATGAS 111 (300)
T ss_pred HHHHHHHHHHHHHcCCeEEE-EEEEEEEecC---C---eeEEEeC---CCCEEEeCEEEECCCCC
Confidence 35778999999999999999 8999998765 2 2345543 67789999999998753
No 145
>PRK10262 thioredoxin reductase; Provisional
Probab=93.02 E-value=0.3 Score=42.47 Aligned_cols=58 Identities=12% Similarity=0.121 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecC---CCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT---DKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~---~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.+++.|++++++++|++|.-++ + ++.+|++.... +.+++++|.||.++..
T Consensus 186 ~~~~~~~~~l~~~gV~i~~~~~v~~v~~~~---~--~~~~v~~~~~~~~~~~~~i~~D~vv~a~G~ 246 (321)
T PRK10262 186 ILIKRLMDKVENGNIILHTNRTLEEVTGDQ---M--GVTGVRLRDTQNSDNIESLDVAGLFVAIGH 246 (321)
T ss_pred HHHHHHHhhccCCCeEEEeCCEEEEEEcCC---c--cEEEEEEEEcCCCCeEEEEECCEEEEEeCC
Confidence 356788888999999999999999997654 3 56677775321 2347899999998775
No 146
>PRK06184 hypothetical protein; Provisional
Probab=92.99 E-value=0.55 Score=43.60 Aligned_cols=64 Identities=16% Similarity=0.168 Sum_probs=47.0
Q ss_pred hHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-HhhhCC
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~Ll~ 118 (231)
+-+.|.+.+++.|++|+++++|++|+.+++ + + .+.+....+++++.||.||.|...+. +.+.+.
T Consensus 111 le~~L~~~l~~~gv~i~~~~~v~~i~~~~~--~---v-~v~~~~~~~~~~i~a~~vVgADG~~S~vR~~lg 175 (502)
T PRK06184 111 TERILRERLAELGHRVEFGCELVGFEQDAD--G---V-TARVAGPAGEETVRARYLVGADGGRSFVRKALG 175 (502)
T ss_pred HHHHHHHHHHHCCCEEEeCcEEEEEEEcCC--c---E-EEEEEeCCCeEEEEeCEEEECCCCchHHHHhCC
Confidence 456788888999999999999999988762 3 3 23332223567899999999988764 555554
No 147
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=92.94 E-value=0.35 Score=44.56 Aligned_cols=54 Identities=11% Similarity=0.090 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.++++|++|+++++|++|..++ + ++ .+.+. +|+.+++|.||.++..
T Consensus 219 ~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~---~--~~-~v~~~---~g~~l~~D~vl~a~G~ 272 (466)
T PRK07845 219 DAAEVLEEVFARRGMTVLKRSRAESVERTG---D--GV-VVTLT---DGRTVEGSHALMAVGS 272 (466)
T ss_pred HHHHHHHHHHHHCCcEEEcCCEEEEEEEeC---C--EE-EEEEC---CCcEEEecEEEEeecC
Confidence 467788999999999999999999998654 3 22 35443 6788999999998774
No 148
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=92.77 E-value=0.31 Score=43.04 Aligned_cols=51 Identities=16% Similarity=0.154 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+.+.+.+.++++|++++++++|++|. + + ++.+. +|+++++|.||.+++..
T Consensus 192 ~~~~~~~~~l~~~gV~v~~~~~v~~i~--~---~-----~v~~~---~g~~i~~D~vi~a~G~~ 242 (364)
T TIGR03169 192 KVRRLVLRLLARRGIEVHEGAPVTRGP--D---G-----ALILA---DGRTLPADAILWATGAR 242 (364)
T ss_pred HHHHHHHHHHHHCCCEEEeCCeeEEEc--C---C-----eEEeC---CCCEEecCEEEEccCCC
Confidence 467788899999999999999999884 2 2 35563 78899999999998853
No 149
>PRK07045 putative monooxygenase; Reviewed
Probab=92.76 E-value=0.54 Score=41.90 Aligned_cols=62 Identities=18% Similarity=0.150 Sum_probs=46.6
Q ss_pred hhHHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-Hhhh
Q 026885 48 YLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRL 116 (231)
Q Consensus 48 ~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~L 116 (231)
.+.+.|.+.+.+ .|++++++++|+.|+.+++ + .++.|.+. +|+++.+|.||.|-..+. +.+.
T Consensus 107 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~~--~--~~~~v~~~---~g~~~~~~~vIgADG~~S~vR~~ 170 (388)
T PRK07045 107 QLRRLLLAKLDGLPNVRLRFETSIERIERDAD--G--TVTSVTLS---DGERVAPTVLVGADGARSMIRDD 170 (388)
T ss_pred HHHHHHHHHHhcCCCeeEEeCCEEEEEEECCC--C--cEEEEEeC---CCCEEECCEEEECCCCChHHHHH
Confidence 355667777654 5799999999999998763 4 45567663 788999999999988764 5553
No 150
>PRK14694 putative mercuric reductase; Provisional
Probab=92.73 E-value=0.47 Score=43.68 Aligned_cols=54 Identities=13% Similarity=0.075 Sum_probs=42.2
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
..+.+.+.+.++++|++|+++++|++|..++ + . ..+.. ++.++++|.||.++..
T Consensus 218 ~~~~~~l~~~l~~~GI~v~~~~~v~~i~~~~---~--~-~~v~~----~~~~i~~D~vi~a~G~ 271 (468)
T PRK14694 218 PAVGEAIEAAFRREGIEVLKQTQASEVDYNG---R--E-FILET----NAGTLRAEQLLVATGR 271 (468)
T ss_pred HHHHHHHHHHHHhCCCEEEeCCEEEEEEEcC---C--E-EEEEE----CCCEEEeCEEEEccCC
Confidence 3578889999999999999999999998664 3 2 23433 4456999999998764
No 151
>PF06039 Mqo: Malate:quinone oxidoreductase (Mqo); InterPro: IPR006231 The membrane-associated enzyme, malate:quinone-oxidoreductase, is an alternative to the better-known NAD-dependent malate dehydrogenase as part of the TCA cycle. The reduction of a quinone rather than NAD+ makes the reaction essentially irreversible in the direction of malate oxidation to oxaloacetate. Both forms of malate dehydrogenase are active in Escherichia coli; disruption of this form causes less phenotypic change. In some bacteria, this form is the only or the more important malate dehydrogenase []. ; GO: 0008924 malate dehydrogenase (quinone) activity, 0006099 tricarboxylic acid cycle, 0055114 oxidation-reduction process
Probab=92.73 E-value=0.66 Score=42.73 Aligned_cols=61 Identities=15% Similarity=0.224 Sum_probs=48.2
Q ss_pred hhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEe--cCCCeEEecCEEEEcCChhhH
Q 026885 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVPGI 113 (231)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~--~~~g~~~~aD~vV~a~p~~~~ 113 (231)
.|.+.|.+.++++ |+++++|++|+.|...++ | -+.|.+.+ +++..++.|+.|+..+.-.++
T Consensus 182 ~LTr~l~~~l~~~~~~~~~~~~eV~~i~r~~d--g---~W~v~~~~~~~~~~~~v~a~FVfvGAGG~aL 245 (488)
T PF06039_consen 182 ALTRQLVEYLQKQKGFELHLNHEVTDIKRNGD--G---RWEVKVKDLKTGEKREVRAKFVFVGAGGGAL 245 (488)
T ss_pred HHHHHHHHHHHhCCCcEEEecCEeCeeEECCC--C---CEEEEEEecCCCCeEEEECCEEEECCchHhH
Confidence 6789999999999 999999999999999884 5 35565543 234567899999988876654
No 152
>PRK09077 L-aspartate oxidase; Provisional
Probab=92.52 E-value=0.78 Score=43.15 Aligned_cols=62 Identities=10% Similarity=0.069 Sum_probs=45.8
Q ss_pred chhHHHHHHHHHHC-CcEEEcCceeeEEEeccC---CCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKA---ANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~---~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
..+...|.+.+++. |++|+.+++|.++..+++ ++| ++.||......+|+ .+.|+.||+|+.-
T Consensus 138 ~~i~~~L~~~~~~~~~I~v~~~~~v~~Li~~~~~~~~~g--~v~Gv~~~~~~~g~~~~i~Ak~VVlATGG 205 (536)
T PRK09077 138 KAVQTTLVERARNHPNITVLERHNAIDLITSDKLGLPGR--RVVGAYVLNRNKERVETIRAKFVVLATGG 205 (536)
T ss_pred HHHHHHHHHHHHhCCCcEEEeeEEeeeeeecccccCCCC--EEEEEEEEECCCCcEEEEecCeEEECCCC
Confidence 35778888888776 899999999999987530 015 89999865322344 5789999999774
No 153
>PRK06115 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.52 E-value=0.6 Score=43.04 Aligned_cols=58 Identities=17% Similarity=0.172 Sum_probs=42.9
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe--cCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~--~~~g~~~~aD~vV~a~p~~ 111 (231)
.+.+.+.+.+++.|++|+++++|++|..+++ + ..+.+.. +++++.+++|.||.++...
T Consensus 216 ~~~~~l~~~l~~~gV~i~~~~~V~~i~~~~~--~----v~v~~~~~~~g~~~~i~~D~vi~a~G~~ 275 (466)
T PRK06115 216 ETAKTLQKALTKQGMKFKLGSKVTGATAGAD--G----VSLTLEPAAGGAAETLQADYVLVAIGRR 275 (466)
T ss_pred HHHHHHHHHHHhcCCEEEECcEEEEEEEcCC--e----EEEEEEEcCCCceeEEEeCEEEEccCCc
Confidence 4678899999999999999999999986541 2 2333321 1234678999999998753
No 154
>PRK08071 L-aspartate oxidase; Provisional
Probab=92.49 E-value=0.46 Score=44.39 Aligned_cols=56 Identities=13% Similarity=0.024 Sum_probs=44.3
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
.+.+.|.+.++ .|++|+.+++|++|..++ | ++.|+.... .+|+ .+.|+.||+|+.-
T Consensus 131 ~i~~~L~~~~~-~gV~i~~~~~v~~Li~~~---g--~v~Gv~~~~-~~g~~~~i~Ak~VVlATGG 188 (510)
T PRK08071 131 NLLEHLLQELV-PHVTVVEQEMVIDLIIEN---G--RCIGVLTKD-SEGKLKRYYADYVVLASGG 188 (510)
T ss_pred HHHHHHHHHHh-cCCEEEECeEhhheeecC---C--EEEEEEEEE-CCCcEEEEEcCeEEEecCC
Confidence 47788888876 699999999999998775 6 899987653 2343 5789999999864
No 155
>PRK07190 hypothetical protein; Provisional
Probab=92.40 E-value=0.57 Score=43.53 Aligned_cols=61 Identities=10% Similarity=0.145 Sum_probs=45.6
Q ss_pred hHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-HhhhCC
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~Ll~ 118 (231)
+-+.|.+.+++.|++|+++++|++|+.+++ + +. +.+. +|+++.|+.||.|-..+. +.+.+.
T Consensus 111 le~~L~~~~~~~Gv~v~~~~~v~~l~~~~~--~---v~-v~~~---~g~~v~a~~vVgADG~~S~vR~~lg 172 (487)
T PRK07190 111 VEKLLDDKLKEAGAAVKRNTSVVNIELNQA--G---CL-TTLS---NGERIQSRYVIGADGSRSFVRNHFN 172 (487)
T ss_pred HHHHHHHHHHHCCCEEEeCCEEEEEEEcCC--e---eE-EEEC---CCcEEEeCEEEECCCCCHHHHHHcC
Confidence 345566788899999999999999998763 3 32 3343 677899999999988764 555543
No 156
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=92.39 E-value=0.58 Score=43.11 Aligned_cols=57 Identities=18% Similarity=0.109 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~~ 111 (231)
.+.+.+.+.++++|++|+++++|++|..+++ + ++..+.+. +| +.+++|.||.++...
T Consensus 222 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~~--~--~~~~~~~~---~g~~~~i~~D~vi~a~G~~ 280 (472)
T PRK05976 222 ELSKEVARLLKKLGVRVVTGAKVLGLTLKKD--G--GVLIVAEH---NGEEKTLEADKVLVSVGRR 280 (472)
T ss_pred HHHHHHHHHHHhcCCEEEeCcEEEEEEEecC--C--CEEEEEEe---CCceEEEEeCEEEEeeCCc
Confidence 4678888999999999999999999986211 2 34333332 44 468999999998753
No 157
>PRK08641 sdhA succinate dehydrogenase flavoprotein subunit; Reviewed
Probab=92.34 E-value=0.7 Score=44.05 Aligned_cols=61 Identities=13% Similarity=0.091 Sum_probs=45.9
Q ss_pred cchhHHHHHHHHHHCC----cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 46 DVYLSGPIRKYITDKG----GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~G----g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
+..+...|.+.+++.| ++|+.++.++++.++++ | +|.||......+|+ .+.|++||+|+.-
T Consensus 132 G~~i~~~L~~~~~~~~~~~~i~i~~~~~~~~Li~~~~--g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 198 (589)
T PRK08641 132 GQQLLYALDEQVRRYEVAGLVTKYEGWEFLGAVLDDE--G--VCRGIVAQDLFTMEIESFPADAVIMATGG 198 (589)
T ss_pred HHHHHHHHHHHHHhhhccCCcEEEeeEEEEEEEECCC--C--EEEEEEEEECCCCcEEEEECCEEEECCCC
Confidence 3467888888877654 78999999999998643 6 89999875322343 4679999999873
No 158
>PRK06185 hypothetical protein; Provisional
Probab=92.32 E-value=0.7 Score=41.40 Aligned_cols=65 Identities=12% Similarity=0.090 Sum_probs=48.4
Q ss_pred hhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC-eEEecCEEEEcCChhh-HhhhCC
Q 026885 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVPG-IKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g-~~~~aD~vV~a~p~~~-~~~Ll~ 118 (231)
.+.+.|.+.+++. |++++.+++|+++..++ + ++.+|.+.. .+| .++.||.||.|-..+. +.+.+.
T Consensus 109 ~l~~~L~~~~~~~~~v~i~~~~~v~~~~~~~---~--~v~~v~~~~-~~g~~~i~a~~vI~AdG~~S~vr~~~g 176 (407)
T PRK06185 109 DFLDFLAEEASAYPNFTLRMGAEVTGLIEEG---G--RVTGVRART-PDGPGEIRADLVVGADGRHSRVRALAG 176 (407)
T ss_pred HHHHHHHHHHhhCCCcEEEeCCEEEEEEEeC---C--EEEEEEEEc-CCCcEEEEeCEEEECCCCchHHHHHcC
Confidence 4567777777765 89999999999999876 4 677776642 245 3789999999988653 555554
No 159
>PRK07818 dihydrolipoamide dehydrogenase; Reviewed
Probab=92.27 E-value=0.64 Score=42.77 Aligned_cols=56 Identities=20% Similarity=0.125 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.++++|++|++|++|+++.-++ + + ..+.+.. .+| +++++|.||.++..
T Consensus 214 ~~~~~l~~~l~~~gV~i~~~~~v~~i~~~~---~--~-~~v~~~~-~~g~~~~i~~D~vi~a~G~ 271 (466)
T PRK07818 214 EVSKEIAKQYKKLGVKILTGTKVESIDDNG---S--K-VTVTVSK-KDGKAQELEADKVLQAIGF 271 (466)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEeC---C--e-EEEEEEe-cCCCeEEEEeCEEEECcCc
Confidence 467888999999999999999999997654 2 2 2344421 134 47899999999775
No 160
>TIGR03364 HpnW_proposed FAD dependent oxidoreductase TIGR03364. This clade of FAD dependent oxidoreductases (members of the pfam01266 family) is syntenically associated with a family of proposed phosphonatase-like enzymes (TIGR03351) and is also found (less frequently) in association with phosphonate transporter components. A likely role for this enzyme involves the oxidative deamination of an aminophosphonate differring slightly from 2-aminoethylphosphonate, possibly 1-hydroxy-2-aminoethylphosphonate (see the comments for TIGR03351). Many members of the larger FAD dependent oxidoreductase family act as amino acid oxidative deaminases.
Probab=92.21 E-value=0.42 Score=42.15 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=39.2
Q ss_pred hhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
.+...+.+.++++ |++|+.+++|++|+ . + +|++. +| .+.||.||.|+....
T Consensus 146 ~~~~~l~~~~~~~~Gv~i~~~t~V~~i~--~---~-----~v~t~---~g-~i~a~~VV~A~G~~s 197 (365)
T TIGR03364 146 EAIPALAAYLAEQHGVEFHWNTAVTSVE--T---G-----TVRTS---RG-DVHADQVFVCPGADF 197 (365)
T ss_pred HHHHHHHHHHHhcCCCEEEeCCeEEEEe--c---C-----eEEeC---CC-cEEeCEEEECCCCCh
Confidence 5678888888876 99999999999994 2 1 35552 44 468999999988754
No 161
>PRK13369 glycerol-3-phosphate dehydrogenase; Provisional
Probab=92.20 E-value=0.66 Score=43.21 Aligned_cols=57 Identities=18% Similarity=0.095 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~~ 111 (231)
.+...+.+..+++|++|+.+++|++|..++ + .++|.+.++. | .++.||.||.|+.++
T Consensus 156 rl~~~l~~~a~~~Ga~i~~~~~V~~i~~~~---~---~~~v~~~~~~-g~~~~i~a~~VVnAaG~w 214 (502)
T PRK13369 156 RLVVLNALDAAERGATILTRTRCVSARREG---G---LWRVETRDAD-GETRTVRARALVNAAGPW 214 (502)
T ss_pred HHHHHHHHHHHHCCCEEecCcEEEEEEEcC---C---EEEEEEEeCC-CCEEEEEecEEEECCCcc
Confidence 456677788899999999999999999875 3 4567664221 3 358899999998874
No 162
>TIGR01176 fum_red_Fp fumarate reductase, flavoprotein subunit. The terms succinate dehydrogenase and fumarate reductase may be used interchangeably in certain systems. However, a number of species have distinct complexes, with the fumarate reductase active under anaerobic conditions. This model represents the fumarate reductase flavoprotein subunit from several such species in which a distinct succinate dehydrogenase is also found. Not all bona fide fumarate reductases will be found by this model.
Probab=92.13 E-value=0.87 Score=43.35 Aligned_cols=60 Identities=18% Similarity=0.096 Sum_probs=46.6
Q ss_pred cchhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCCh
Q 026885 46 DVYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~ 110 (231)
+..+..+|.+.+++. |++++.++.|++|..++ | ++.|+......+| ..+.|+.||+|..-
T Consensus 131 G~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 193 (580)
T TIGR01176 131 GFHMLHTLFQTSLTYPQIMRYDEWFVTDLLVDD---G--RVCGLVAIEMAEGRLVTILADAVVLATGG 193 (580)
T ss_pred HHHHHHHHHHHHHhcCCCEEEeCeEEEEEEeeC---C--EEEEEEEEEcCCCcEEEEecCEEEEcCCC
Confidence 346888888888775 79999999999999875 6 8999875422245 46789999999764
No 163
>TIGR01292 TRX_reduct thioredoxin-disulfide reductase. This model describes thioredoxin-disulfide reductase, a member of the pyridine nucleotide-disulphide oxidoreductases (PFAM:PF00070).
Probab=92.12 E-value=0.68 Score=39.20 Aligned_cols=55 Identities=15% Similarity=0.200 Sum_probs=41.7
Q ss_pred HHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEe--cCCCeEEecCEEEEcCCh
Q 026885 50 SGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDV 110 (231)
Q Consensus 50 ~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~--~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.++++ |++++++++|++|..++ ++.++++.. .++++++++|.||.++..
T Consensus 179 ~~~~~~~l~~~~gv~~~~~~~v~~i~~~~------~~~~v~~~~~~~g~~~~i~~D~vi~a~G~ 236 (300)
T TIGR01292 179 EKILLDRLRKNPNIEFLWNSTVKEIVGDN------KVEGVKIKNTVTGEEEELKVDGVFIAIGH 236 (300)
T ss_pred CHHHHHHHHhCCCeEEEeccEEEEEEccC------cEEEEEEEecCCCceEEEEccEEEEeeCC
Confidence 45677888888 99999999999997543 566676542 123467899999999875
No 164
>PRK07588 hypothetical protein; Provisional
Probab=92.02 E-value=0.49 Score=42.21 Aligned_cols=58 Identities=16% Similarity=0.076 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-Hhhh
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRL 116 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~L 116 (231)
|.+.|.+.+. .|++|+++++|++|+.++ + .+ .|+++ +|+++++|.||.|-..+. +.+.
T Consensus 105 l~~~L~~~~~-~~v~i~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~~d~vIgADG~~S~vR~~ 163 (391)
T PRK07588 105 LAAAIYTAID-GQVETIFDDSIATIDEHR---D--GV-RVTFE---RGTPRDFDLVIGADGLHSHVRRL 163 (391)
T ss_pred HHHHHHHhhh-cCeEEEeCCEEeEEEECC---C--eE-EEEEC---CCCEEEeCEEEECCCCCccchhh
Confidence 4455555554 479999999999998876 3 33 35553 788889999999887754 4444
No 165
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=92.00 E-value=0.78 Score=42.10 Aligned_cols=55 Identities=22% Similarity=0.251 Sum_probs=40.8
Q ss_pred HHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe------cCC-----------CeEEecCEEEEcCCh
Q 026885 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------ATD-----------KKVVQADAYVAACDV 110 (231)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~------~~~-----------g~~~~aD~vV~a~p~ 110 (231)
...+.+++.|++|++++.+++|..+++ | ++++|.+.. ..+ .+++++|.||.++..
T Consensus 314 ~~~~~l~~~GV~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~D~Vi~AiG~ 385 (449)
T TIGR01316 314 EEIAHAEEEGVKFHFLCQPVEIIGDEE--G--NVRAVKFRKMDCQEQIDSGERRFLPCGDAECKLEADAVIVAIGN 385 (449)
T ss_pred HHHHHHHhCCCEEEeccCcEEEEEcCC--C--eEEEEEEEEEEecCcCCCCCeeeeecCCceEEEECCEEEECCCC
Confidence 445678899999999999999976542 5 788887641 011 236899999999775
No 166
>TIGR01810 betA choline dehydrogenase. This enzyme is a member of the GMC oxidoreductase family (pfam00732 and pfam05199), sharing a common evoluntionary origin and enzymatic reaction with alcohol dehydrogenase. Outgrouping from this model, Caulobacter crescentus shares sequence homology with choline dehydrogenase, yet other genes participating in this enzymatic reaction have not currently been identified.
Probab=91.97 E-value=0.39 Score=45.02 Aligned_cols=46 Identities=9% Similarity=0.104 Sum_probs=36.0
Q ss_pred HHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe---EEecCEEEEcCCh
Q 026885 58 TDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK---VVQADAYVAACDV 110 (231)
Q Consensus 58 ~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~---~~~aD~vV~a~p~ 110 (231)
++.|.+|+++++|++|.+++ + +++||++.. +++ ...++.||+++..
T Consensus 205 ~r~nl~i~~~~~V~rI~~~~---~--ra~GV~~~~--~~~~~~~~~ak~VIlaAGa 253 (532)
T TIGR01810 205 KRPNLEVQTRAFVTKINFEG---N--RATGVEFKK--GGRKEHTEANKEVILSAGA 253 (532)
T ss_pred cCCCeEEEeCCEEEEEEecC---C--eEEEEEEEe--CCcEEEEEEeeeEEEccCC
Confidence 35579999999999999986 5 899998863 222 3578888888775
No 167
>PRK14727 putative mercuric reductase; Provisional
Probab=91.94 E-value=0.63 Score=43.02 Aligned_cols=54 Identities=9% Similarity=0.001 Sum_probs=41.5
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+.+.+.+.++++|++|+++++|+++..++ + . ..+.. ++.++.+|.||.++...
T Consensus 229 ~~~~~l~~~L~~~GV~i~~~~~V~~i~~~~---~--~-~~v~~----~~g~i~aD~VlvA~G~~ 282 (479)
T PRK14727 229 LLGETLTACFEKEGIEVLNNTQASLVEHDD---N--G-FVLTT----GHGELRAEKLLISTGRH 282 (479)
T ss_pred HHHHHHHHHHHhCCCEEEcCcEEEEEEEeC---C--E-EEEEE----cCCeEEeCEEEEccCCC
Confidence 567888999999999999999999998765 2 2 22333 33468899999998863
No 168
>PRK09897 hypothetical protein; Provisional
Probab=91.94 E-value=0.68 Score=43.63 Aligned_cols=55 Identities=13% Similarity=-0.113 Sum_probs=39.3
Q ss_pred hhHHHHHHHHHHCC--cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKG--GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~G--g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
...+.+.+.+++.| ++++.+++|+.|..++ + . ..|.+. .+|+.+.||.||+|+..
T Consensus 108 ~~f~~l~~~a~~~G~~V~v~~~~~V~~I~~~~---~--g-~~V~t~--~gg~~i~aD~VVLAtGh 164 (534)
T PRK09897 108 DQFLRLVDQARQQKFAVAVYESCQVTDLQITN---A--G-VMLATN--QDLPSETFDLAVIATGH 164 (534)
T ss_pred HHHHHHHHHHHHcCCeEEEEECCEEEEEEEeC---C--E-EEEEEC--CCCeEEEcCEEEECCCC
Confidence 34555666667777 7899999999998876 3 2 334442 23578899999999885
No 169
>PRK09231 fumarate reductase flavoprotein subunit; Validated
Probab=91.92 E-value=0.86 Score=43.34 Aligned_cols=59 Identities=17% Similarity=0.061 Sum_probs=45.4
Q ss_pred chhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~ 110 (231)
..+...|.+.+.+. |++|+.++.|++|..++ | ++.||......+| ..+.|+.||+|..-
T Consensus 133 ~~i~~~L~~~~~~~~~i~i~~~~~v~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVIlATGG 194 (582)
T PRK09231 133 FHMLHTLFQTSLKYPQIQRFDEHFVLDILVDD---G--HVRGLVAMNMMEGTLVQIRANAVVMATGG 194 (582)
T ss_pred HHHHHHHHHHhhcCCCcEEEeCeEEEEEEEeC---C--EEEEEEEEEcCCCcEEEEECCEEEECCCC
Confidence 35777888877775 79999999999999875 6 8999865322245 36789999999874
No 170
>PTZ00052 thioredoxin reductase; Provisional
Probab=91.89 E-value=0.64 Score=43.33 Aligned_cols=56 Identities=16% Similarity=0.021 Sum_probs=44.5
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
+.+.+.+.+.++++|++++++++|+++...+ + . ..+.+. +|+.+.+|.||.++...
T Consensus 222 ~~~~~~l~~~l~~~GV~i~~~~~v~~v~~~~---~--~-~~v~~~---~g~~i~~D~vl~a~G~~ 277 (499)
T PTZ00052 222 RQCSEKVVEYMKEQGTLFLEGVVPINIEKMD---D--K-IKVLFS---DGTTELFDTVLYATGRK 277 (499)
T ss_pred HHHHHHHHHHHHHcCCEEEcCCeEEEEEEcC---C--e-EEEEEC---CCCEEEcCEEEEeeCCC
Confidence 3567889999999999999999999998654 2 2 345553 67888999999998853
No 171
>TIGR01438 TGR thioredoxin and glutathione reductase selenoprotein. This homodimeric, FAD-containing member of the pyridine nucleotide disulfide oxidoreductase family contains a C-terminal motif Cys-SeCys-Gly, where SeCys is selenocysteine encoded by TGA (in some sequence reports interpreted as a stop codon). In some members of this subfamily, Cys-SeCys-Gly is replaced by Cys-Cys-Gly. The reach of the selenium atom at the C-term arm of the protein is proposed to allow broad substrate specificity.
Probab=91.89 E-value=0.68 Score=43.00 Aligned_cols=58 Identities=10% Similarity=0.076 Sum_probs=42.9
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
..+.+.+.+.|+++|++|++++.++++...+ + . ..|++..+.+++++++|.||.++..
T Consensus 220 ~~~~~~l~~~L~~~gV~i~~~~~v~~v~~~~---~--~-~~v~~~~~~~~~~i~~D~vl~a~G~ 277 (484)
T TIGR01438 220 QDCANKVGEHMEEHGVKFKRQFVPIKVEQIE---A--K-VKVTFTDSTNGIEEEYDTVLLAIGR 277 (484)
T ss_pred HHHHHHHHHHHHHcCCEEEeCceEEEEEEcC---C--e-EEEEEecCCcceEEEeCEEEEEecC
Confidence 4567888999999999999999999997654 2 2 3355531111347899999999875
No 172
>PRK06912 acoL dihydrolipoamide dehydrogenase; Validated
Probab=91.85 E-value=0.76 Score=42.19 Aligned_cols=53 Identities=9% Similarity=0.086 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.++++|++|+++++|++|..++ + .+.+.. +| +++++|.||.++..
T Consensus 212 e~~~~l~~~L~~~GI~i~~~~~V~~i~~~~---~-----~v~~~~--~g~~~~i~~D~vivA~G~ 266 (458)
T PRK06912 212 DIAHILREKLENDGVKIFTGAALKGLNSYK---K-----QALFEY--EGSIQEVNAEFVLVSVGR 266 (458)
T ss_pred HHHHHHHHHHHHCCCEEEECCEEEEEEEcC---C-----EEEEEE--CCceEEEEeCEEEEecCC
Confidence 467788999999999999999999997654 2 233321 33 46899999999875
No 173
>TIGR02462 pyranose_ox pyranose oxidase. Pyranose oxidase (also called glucose 2-oxidase) converts D-glucose and molecular oxygen to 2-dehydro-D-glucose and hydrogen peroxide. Peroxide production is believed to be important to the wood rot fungi in which this enzyme is found for lignin degradation.
Probab=91.72 E-value=0.66 Score=43.81 Aligned_cols=66 Identities=15% Similarity=0.231 Sum_probs=43.8
Q ss_pred hHHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEEec--CCCeEEecCEEEEcCCh-hhHhhhC
Q 026885 49 LSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKA--TDKKVVQADAYVAACDV-PGIKRLL 117 (231)
Q Consensus 49 l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~--~~g~~~~aD~vV~a~p~-~~~~~Ll 117 (231)
|.+.+.+.+ +.| .+|++|+.|.+|.++++ +.++|++|.+.+. ++..++.|+.||+|+.. +..+-||
T Consensus 216 ~~~~~~~~~-~~~n~~l~~~a~v~~i~~d~~--~~~~v~~v~~~d~~~g~~~~v~A~~vVLAagaIetpRLLL 285 (544)
T TIGR02462 216 FDLQPNDDA-PSERFTLLTNHRCTRLVRNET--NESEIEAALVRDLLSGDRFEIKADVYVLACGAVHNPQILV 285 (544)
T ss_pred hhhhhhhhc-cCCCEEEEcCCEEEEEEeCCC--CCceeEEEEEEECCCCcEEEEECCEEEEccCchhhHHHHH
Confidence 444444444 455 89999999999999863 2127899877642 22335789999999884 4444343
No 174
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=91.61 E-value=0.53 Score=43.01 Aligned_cols=51 Identities=14% Similarity=0.156 Sum_probs=41.3
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
+.+.+.+.+.++++|++++++++|++|. + . .+.+. +|+.+++|.||.++..
T Consensus 189 ~~~~~~l~~~l~~~gI~i~~~~~v~~i~--~---~-----~v~~~---~g~~~~~D~vl~a~G~ 239 (438)
T PRK13512 189 ADMNQPILDELDKREIPYRLNEEIDAIN--G---N-----EVTFK---SGKVEHYDMIIEGVGT 239 (438)
T ss_pred HHHHHHHHHHHHhcCCEEEECCeEEEEe--C---C-----EEEEC---CCCEEEeCEEEECcCC
Confidence 3567789999999999999999999994 2 1 35553 6778999999999875
No 175
>PRK08020 ubiF 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Reviewed
Probab=91.56 E-value=0.76 Score=40.92 Aligned_cols=62 Identities=11% Similarity=0.110 Sum_probs=46.3
Q ss_pred hhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-HhhhCC
Q 026885 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~Ll~ 118 (231)
.+.+.|.+.+++. |++++.+++|+++..++ + . ..|.+. +|++++||.||.|...+. +.+.+.
T Consensus 113 ~l~~~L~~~~~~~~gv~i~~~~~v~~i~~~~---~--~-~~v~~~---~g~~~~a~~vI~AdG~~S~vR~~~~ 176 (391)
T PRK08020 113 VLQLALWQALEAHPNVTLRCPASLQALQRDD---D--G-WELTLA---DGEEIQAKLVIGADGANSQVRQMAG 176 (391)
T ss_pred HHHHHHHHHHHcCCCcEEEcCCeeEEEEEcC---C--e-EEEEEC---CCCEEEeCEEEEeCCCCchhHHHcC
Confidence 4567777777777 99999999999998776 2 2 345553 777899999999988754 555543
No 176
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=91.53 E-value=0.82 Score=42.20 Aligned_cols=57 Identities=19% Similarity=0.188 Sum_probs=42.7
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~ 110 (231)
..+.+.+.+.++++|++|+++++|++|..++ + .+ .+.+.. .+| +.+++|.||.++..
T Consensus 224 ~~~~~~~~~~l~~~gi~i~~~~~v~~i~~~~---~--~v-~v~~~~-~~g~~~~i~~D~vl~a~G~ 282 (475)
T PRK06327 224 EQVAKEAAKAFTKQGLDIHLGVKIGEIKTGG---K--GV-SVAYTD-ADGEAQTLEVDKLIVSIGR 282 (475)
T ss_pred HHHHHHHHHHHHHcCcEEEeCcEEEEEEEcC---C--EE-EEEEEe-CCCceeEEEcCEEEEccCC
Confidence 3567888999999999999999999998765 2 22 344432 123 46899999998774
No 177
>PRK07251 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.51 E-value=0.85 Score=41.53 Aligned_cols=53 Identities=19% Similarity=0.241 Sum_probs=40.8
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.++++|++++++++|++|..++ + ++ .+. . +|+++++|.||.++..
T Consensus 199 ~~~~~~~~~l~~~GI~i~~~~~V~~i~~~~---~--~v-~v~-~---~g~~i~~D~viva~G~ 251 (438)
T PRK07251 199 SVAALAKQYMEEDGITFLLNAHTTEVKNDG---D--QV-LVV-T---EDETYRFDALLYATGR 251 (438)
T ss_pred HHHHHHHHHHHHcCCEEEcCCEEEEEEecC---C--EE-EEE-E---CCeEEEcCEEEEeeCC
Confidence 466777888999999999999999998754 3 22 222 2 6778999999998664
No 178
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=91.47 E-value=0.9 Score=41.70 Aligned_cols=54 Identities=20% Similarity=0.191 Sum_probs=40.3
Q ss_pred HHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe----------------cCCCeEEecCEEEEcCCh
Q 026885 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK----------------ATDKKVVQADAYVAACDV 110 (231)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~----------------~~~g~~~~aD~vV~a~p~ 110 (231)
...+.+++.|++|++++.|.+|.-++ + ++++|++.. .++++++++|.||.++..
T Consensus 316 ~~~~~~~~~GV~i~~~~~v~~i~~~~---~--~~~~v~~~~~~~~~~~~~g~~~~~~~g~~~~i~~D~vi~a~G~ 385 (457)
T PRK11749 316 EEVEHAKEEGVEFEWLAAPVEILGDE---G--RVTGVEFVRMELGEPDASGRRRVPIEGSEFTLPADLVIKAIGQ 385 (457)
T ss_pred HHHHHHHHCCCEEEecCCcEEEEecC---C--ceEEEEEEEEEecCcCCCCCcccCCCCceEEEECCEEEECccC
Confidence 35677899999999999999998655 3 456666531 123457899999999875
No 179
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=91.45 E-value=0.68 Score=39.93 Aligned_cols=65 Identities=18% Similarity=0.217 Sum_probs=46.7
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCChhh-HhhhCC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG-IKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~~~-~~~Ll~ 118 (231)
.+-+.|.+.+++.|++|+++++|+.+..++ + .++.. +....+|+ +++||.||-|-..+. +.+.+.
T Consensus 112 ~l~~~L~~~~~~~gv~i~~~~~v~~~~~d~---~--~~~~~-~~~~~~g~~~~i~adlvVgADG~~S~vR~~l~ 179 (356)
T PF01494_consen 112 ELDRALREEAEERGVDIRFGTRVVSIEQDD---D--GVTVV-VRDGEDGEEETIEADLVVGADGAHSKVRKQLG 179 (356)
T ss_dssp HHHHHHHHHHHHHTEEEEESEEEEEEEEET---T--EEEEE-EEETCTCEEEEEEESEEEE-SGTT-HHHHHTT
T ss_pred HHHHhhhhhhhhhhhhheeeeecccccccc---c--ccccc-cccccCCceeEEEEeeeecccCcccchhhhcc
Confidence 467788899999999999999999998876 3 34433 33322343 689999999988764 666654
No 180
>PRK08163 salicylate hydroxylase; Provisional
Probab=91.40 E-value=0.88 Score=40.55 Aligned_cols=56 Identities=14% Similarity=0.014 Sum_probs=42.7
Q ss_pred hhHHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
.+.+.|.+.+++.| ++++++++|+++..++ + .+ .+.+. +|+++.||.||.|...+.
T Consensus 110 ~l~~~L~~~~~~~~~v~~~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~ad~vV~AdG~~S 166 (396)
T PRK08163 110 DIHLSLLEAVLDHPLVEFRTSTHVVGIEQDG---D--GV-TVFDQ---QGNRWTGDALIGCDGVKS 166 (396)
T ss_pred HHHHHHHHHHHhcCCcEEEeCCEEEEEecCC---C--ce-EEEEc---CCCEEecCEEEECCCcCh
Confidence 35677888887775 8999999999998765 3 23 35443 778899999999987754
No 181
>PRK08010 pyridine nucleotide-disulfide oxidoreductase; Provisional
Probab=91.37 E-value=0.75 Score=41.92 Aligned_cols=53 Identities=17% Similarity=0.171 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.++++|++++++++|++|..++ + ++ .+.. ++..+.+|.||.++..
T Consensus 200 ~~~~~l~~~l~~~gV~v~~~~~v~~i~~~~---~--~v-~v~~----~~g~i~~D~vl~a~G~ 252 (441)
T PRK08010 200 DIADNIATILRDQGVDIILNAHVERISHHE---N--QV-QVHS----EHAQLAVDALLIASGR 252 (441)
T ss_pred HHHHHHHHHHHhCCCEEEeCCEEEEEEEcC---C--EE-EEEE----cCCeEEeCEEEEeecC
Confidence 567888999999999999999999998764 3 22 2333 3335789999998664
No 182
>PLN02815 L-aspartate oxidase
Probab=91.36 E-value=0.79 Score=43.78 Aligned_cols=61 Identities=7% Similarity=0.059 Sum_probs=45.5
Q ss_pred chhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcc-eEEEEEEEecCCCe--EEecCEEEEcCC
Q 026885 47 VYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAET-YVKGLAMSKATDKK--VVQADAYVAACD 109 (231)
Q Consensus 47 ~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~-~v~~v~~~~~~~g~--~~~aD~vV~a~p 109 (231)
..+...|.+.+++. |++|+.++.+++|..+++ |+. ++.|+......+|+ .+.|++||+|+.
T Consensus 155 ~~i~~~L~~~~~~~~~i~i~~~~~~~~Li~~~~--g~~~~v~Gv~~~~~~~g~~~~i~AkaVILATG 219 (594)
T PLN02815 155 REIERALLEAVKNDPNITFFEHHFAIDLLTSQD--GGSIVCHGADVLDTRTGEVVRFISKVTLLASG 219 (594)
T ss_pred HHHHHHHHHHHHhcCCCEEEeceEhheeeeecC--CCccEEEEEEEEEcCCCeEEEEEeceEEEcCC
Confidence 35788898888876 899999999999998642 310 28898764323454 457999999987
No 183
>PF07156 Prenylcys_lyase: Prenylcysteine lyase; InterPro: IPR010795 This entry represents a conserved region found in a group of prenylcysteine lyases (1.8.3.5 from EC) that are approximately 500 residues long. Prenylcysteine lyase is a FAD-dependent thioether oxidase that degrades a variety of prenylcysteines, producing free cysteine, an isoprenoid aldehyde and hydrogen peroxide as products of the reaction []. It has been noted that this enzyme has considerable homology with ClP55, a 55 kDa protein that is associated with chloride ion pumps [].; GO: 0016670 oxidoreductase activity, acting on a sulfur group of donors, oxygen as acceptor, 0030328 prenylcysteine catabolic process, 0055114 oxidation-reduction process
Probab=91.31 E-value=0.68 Score=41.57 Aligned_cols=56 Identities=11% Similarity=0.092 Sum_probs=35.9
Q ss_pred HHHHHHHCCcEEEcCceeeEE-EeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 53 IRKYITDKGGRFHLRWGCREI-LYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i-~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
..+.|++.|.++ +|++|++| ...++ + .....|....+.+...-.+|.||.|+|.+.
T Consensus 131 ~~~ll~~S~A~v-l~~~Vt~I~~~~~~--~-~~~y~v~~~~~~~~~~~~yD~VVIAtPl~~ 187 (368)
T PF07156_consen 131 FEGLLEASGANV-LNTTVTSITRRSSD--G-YSLYEVTYKSSSGTESDEYDIVVIATPLQQ 187 (368)
T ss_pred HHHHHHHccCcE-ecceeEEEEeccCC--C-ceeEEEEEecCCCCccccCCEEEECCCccc
Confidence 344555689999 99999999 34432 3 134455544222333345799999999964
No 184
>PF12831 FAD_oxidored: FAD dependent oxidoreductase; PDB: 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A.
Probab=91.29 E-value=0.059 Score=49.14 Aligned_cols=65 Identities=12% Similarity=0.268 Sum_probs=0.0
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll 117 (231)
.+-.-+.+.+++.|++|++++.|..+..++ + +|++|++.......++.|+.||=|..--.+..+.
T Consensus 91 ~~~~~l~~~l~e~gv~v~~~t~v~~v~~~~---~--~i~~V~~~~~~g~~~i~A~~~IDaTG~g~l~~~a 155 (428)
T PF12831_consen 91 VFKAVLDEMLAEAGVEVLLGTRVVDVIRDG---G--RITGVIVETKSGRKEIRAKVFIDATGDGDLAALA 155 (428)
T ss_dssp ----------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccc---c--cccccccccccccccccccccccccccccccccc
Confidence 344556777788999999999999999987 6 8999988632235678899999887754554444
No 185
>COG0578 GlpA Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=91.09 E-value=0.77 Score=43.08 Aligned_cols=86 Identities=13% Similarity=0.062 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCChhh--HhhhCCCcccC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG--IKRLLPSSWRE 123 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~~~--~~~Ll~~~~~~ 123 (231)
.|.-..++-..++|.+|+..++|+++..++ | ++||.+.+..+|+ .+.|+.||.|+.++. +.+........
T Consensus 165 RLv~~~a~~A~~~Ga~il~~~~v~~~~re~---~---v~gV~~~D~~tg~~~~ira~~VVNAaGpW~d~i~~~~~~~~~~ 238 (532)
T COG0578 165 RLVAANARDAAEHGAEILTYTRVESLRREG---G---VWGVEVEDRETGETYEIRARAVVNAAGPWVDEILEMAGLEQSP 238 (532)
T ss_pred HHHHHHHHHHHhcccchhhcceeeeeeecC---C---EEEEEEEecCCCcEEEEEcCEEEECCCccHHHHHHhhcccCCC
Confidence 566677888899999999999999999986 3 8999987544454 467999999988753 44444221110
Q ss_pred chHHHHhhCCCCCcEEEEEEEecC
Q 026885 124 MKFFNNIYALVGVPVVTVQLRYNG 147 (231)
Q Consensus 124 ~~~~~~~~~l~~~~i~~v~L~~d~ 147 (231)
. ..+ .|+-.+||.+++
T Consensus 239 ~------~~v--r~skGsHlVv~~ 254 (532)
T COG0578 239 H------IGV--RPSKGSHLVVDK 254 (532)
T ss_pred C------ccc--eeccceEEEecc
Confidence 0 011 256677888888
No 186
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=91.01 E-value=0.85 Score=42.63 Aligned_cols=55 Identities=11% Similarity=0.123 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+.+.+.+.+++.|++++++++|++|..++ + -..+.+. +|+.+.+|.+|.|+...
T Consensus 268 ~l~~~l~~~l~~~gv~i~~~~~V~~I~~~~---~---~~~v~~~---~g~~i~~d~lIlAtGa~ 322 (515)
T TIGR03140 268 QLAANLEEHIKQYPIDLMENQRAKKIETED---G---LIVVTLE---SGEVLKAKSVIVATGAR 322 (515)
T ss_pred HHHHHHHHHHHHhCCeEEcCCEEEEEEecC---C---eEEEEEC---CCCEEEeCEEEECCCCC
Confidence 577889999999999999999999998765 2 2345553 67789999999998753
No 187
>PTZ00306 NADH-dependent fumarate reductase; Provisional
Probab=90.85 E-value=0.94 Score=46.69 Aligned_cols=62 Identities=18% Similarity=0.195 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHC---CcEEEcCceeeEEEeccC--CCC--cceEEEEEEEec--CCCe--EEecCEEEEcCC
Q 026885 48 YLSGPIRKYITDK---GGRFHLRWGCREILYDKA--ANA--ETYVKGLAMSKA--TDKK--VVQADAYVAACD 109 (231)
Q Consensus 48 ~l~~~l~~~l~~~---Gg~i~~~~~V~~i~~~~~--~~~--~~~v~~v~~~~~--~~g~--~~~aD~vV~a~p 109 (231)
.+...|.+.+++. |++|+++++|++|..+++ ++| ..+|+||..... .+|+ .+.|++||+|+.
T Consensus 545 ~i~~~l~~~~~~~~~~gv~i~~~t~~~~LI~d~~~~~~G~~~~~V~Gv~~~~~~~~~g~~~~i~AkaVILATG 617 (1167)
T PTZ00306 545 TIMRTLEDHIRTKLSGRVTIMTETTVTSLLSESSARPDGVREIRVTGVRYKQASDASGQVMDLLADAVILATG 617 (1167)
T ss_pred HHHHHHHHHHHhhccCCcEEEECCEEEEEEecCCcccCCCccceEEEEEEEecccCCCcEEEEEeceEEEecC
Confidence 4677888888764 999999999999998641 001 017999987532 1343 578999999876
No 188
>PRK08013 oxidoreductase; Provisional
Probab=90.80 E-value=0.78 Score=41.23 Aligned_cols=61 Identities=8% Similarity=0.035 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh-hHhhhC
Q 026885 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~-~~~~Ll 117 (231)
.+-+.|.+.+++. |++|+++++|++|+.+++ + ..+.+. +|++++||.||-|-..+ .+.+.+
T Consensus 112 ~l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~~--~----v~v~~~---~g~~i~a~lvVgADG~~S~vR~~~ 174 (400)
T PRK08013 112 VIHYALWQKAQQSSDITLLAPAELQQVAWGEN--E----AFLTLK---DGSMLTARLVVGADGANSWLRNKA 174 (400)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecCC--e----EEEEEc---CCCEEEeeEEEEeCCCCcHHHHHc
Confidence 3456777777776 799999999999987762 3 345553 78899999999887765 455554
No 189
>PRK07608 ubiquinone biosynthesis hydroxylase family protein; Provisional
Probab=90.66 E-value=0.83 Score=40.55 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=45.9
Q ss_pred hhHHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh-hHhhhC
Q 026885 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~-~~~~Ll 117 (231)
.+.+.|.+.+++.| ++++ +++|++|..++ + . ..|.+. +|+++.||.||.|...+ .+.+.+
T Consensus 112 ~l~~~L~~~~~~~~~v~~~-~~~v~~i~~~~---~--~-~~v~~~---~g~~~~a~~vI~adG~~S~vr~~~ 173 (388)
T PRK07608 112 LIERALWAALRFQPNLTWF-PARAQGLEVDP---D--A-ATLTLA---DGQVLRADLVVGADGAHSWVRSQA 173 (388)
T ss_pred HHHHHHHHHHHhCCCcEEE-cceeEEEEecC---C--e-EEEEEC---CCCEEEeeEEEEeCCCCchHHHhc
Confidence 56788889999998 8999 99999998765 2 2 345553 67789999999888865 455554
No 190
>PRK07364 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=90.66 E-value=0.82 Score=41.00 Aligned_cols=65 Identities=11% Similarity=0.121 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026885 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~-~~~~Ll~ 118 (231)
.+.+.|.+.+.+. |++++++++|++|+.++ + . ..|.+..+++..+++||.||.|-..+ .+.+.+.
T Consensus 122 ~l~~~L~~~~~~~~~v~i~~~~~v~~v~~~~---~--~-~~v~~~~~~~~~~i~adlvIgADG~~S~vR~~~~ 188 (415)
T PRK07364 122 VLLEALQEFLQSCPNITWLCPAEVVSVEYQQ---D--A-ATVTLEIEGKQQTLQSKLVVAADGARSPIRQAAG 188 (415)
T ss_pred HHHHHHHHHHhcCCCcEEEcCCeeEEEEecC---C--e-eEEEEccCCcceEEeeeEEEEeCCCCchhHHHhC
Confidence 4567777777775 79999999999998776 2 2 33555321112468999999887765 3555543
No 191
>PTZ00058 glutathione reductase; Provisional
Probab=90.64 E-value=1.2 Score=42.25 Aligned_cols=57 Identities=11% Similarity=0.026 Sum_probs=42.4
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
+.+.+.+.+.++++|++|+++++|++|.-+++ + ++ .+.+. .+++++++|.||.++..
T Consensus 278 ~~i~~~l~~~L~~~GV~i~~~~~V~~I~~~~~--~--~v-~v~~~--~~~~~i~aD~VlvA~Gr 334 (561)
T PTZ00058 278 ETIINELENDMKKNNINIITHANVEEIEKVKE--K--NL-TIYLS--DGRKYEHFDYVIYCVGR 334 (561)
T ss_pred HHHHHHHHHHHHHCCCEEEeCCEEEEEEecCC--C--cE-EEEEC--CCCEEEECCEEEECcCC
Confidence 35678899999999999999999999986541 2 22 23232 24457999999999775
No 192
>COG3075 GlpB Anaerobic glycerol-3-phosphate dehydrogenase [Amino acid transport and metabolism]
Probab=90.63 E-value=1.3 Score=39.25 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=57.5
Q ss_pred eeeeeCCCCc---chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeE--EecCEEEEcCChh
Q 026885 37 LLRMLKGSPD---VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV--VQADAYVAACDVP 111 (231)
Q Consensus 37 ~~g~~~g~~~---~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~--~~aD~vV~a~p~~ 111 (231)
.+-+|..|+| =.+-+.|.+.+++.||-+..+-+|.+-.+.+ | +++.|.+. |... +.||.+|+|..--
T Consensus 245 l~elPtlPPSllGiRl~~~L~~~f~~~Gg~~m~Gd~V~~a~~~~---~--~v~~i~tr---n~~diP~~a~~~VLAsGsf 316 (421)
T COG3075 245 LFELPTLPPSLLGIRLHNQLQRQFEQLGGLWMPGDEVKKATCKG---G--RVTEIYTR---NHADIPLRADFYVLASGSF 316 (421)
T ss_pred eeecCCCCcchhhhhHHHHHHHHHHHcCceEecCCceeeeeeeC---C--eEEEEEec---ccccCCCChhHeeeecccc
Confidence 4566777754 2568899999999999999999999999998 6 89999775 5544 4699999987654
Q ss_pred hHhhhCCC
Q 026885 112 GIKRLLPS 119 (231)
Q Consensus 112 ~~~~Ll~~ 119 (231)
--+.|+.+
T Consensus 317 fskGLvae 324 (421)
T COG3075 317 FSKGLVAE 324 (421)
T ss_pred ccccchhh
Confidence 44445443
No 193
>KOG1439 consensus RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=90.63 E-value=1.7 Score=39.33 Aligned_cols=66 Identities=17% Similarity=0.077 Sum_probs=54.6
Q ss_pred cceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCC
Q 026885 35 ASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACD 109 (231)
Q Consensus 35 ~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p 109 (231)
.+...||..|++| +.+..+|.-.=.||+.-+|.++.+|...++ | ++.++.. ++++..+..+|+...
T Consensus 221 ~~~ylyP~yGlgE-L~QgFaRlsAvyGgTYMLn~pi~ei~~~~~--g--k~igvk~----~~~v~~~k~vi~dpS 286 (440)
T KOG1439|consen 221 KSPYLYPLYGLGE-LPQGFARLSAVYGGTYMLNKPIDEINETKN--G--KVIGVKS----GGEVAKCKKVICDPS 286 (440)
T ss_pred CCcceecccCcch-hhHHHHHHhhccCceeecCCceeeeeccCC--c--cEEEEec----CCceeecceEEecCc
Confidence 3458999999995 999999999999999999999999999653 6 7877754 667777888888744
No 194
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=90.58 E-value=1.1 Score=41.42 Aligned_cols=53 Identities=15% Similarity=0.136 Sum_probs=40.1
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe--c---------CCCeEEecCEEEEcCCh
Q 026885 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK--A---------TDKKVVQADAYVAACDV 110 (231)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~--~---------~~g~~~~aD~vV~a~p~ 110 (231)
..+.+++.|++|++++.+++|.-++ | ++++|++.. . ++.+++++|.||.++..
T Consensus 335 ~~~~~~~~GV~i~~~~~~~~i~~~~---g--~v~~V~~~~~~~~~g~~~~~~g~~~~i~~D~VI~A~G~ 398 (471)
T PRK12810 335 EVSNAHEEGVEREFNVQTKEFEGEN---G--KVTGVKVVRTELGEGDFEPVEGSEFVLPADLVLLAMGF 398 (471)
T ss_pred HHHHHHHcCCeEEeccCceEEEccC---C--EEEEEEEEEEEecCCCccccCCceEEEECCEEEECcCc
Confidence 3567788999999999999997544 5 788876541 0 12257899999999874
No 195
>COG1249 Lpd Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component, and related enzymes [Energy production and conversion]
Probab=90.53 E-value=1 Score=41.57 Aligned_cols=61 Identities=18% Similarity=0.188 Sum_probs=47.8
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh-hhHhhh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV-PGIKRL 116 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~-~~~~~L 116 (231)
+.+.+.+.+.+++.|++|+++++|++++..+ + . ..+.+. +|+ ++++|.|+.|+.- +....|
T Consensus 214 ~ei~~~~~~~l~~~gv~i~~~~~v~~~~~~~---~--~-v~v~~~---~g~~~~~~ad~vLvAiGR~Pn~~~L 277 (454)
T COG1249 214 PEISKELTKQLEKGGVKILLNTKVTAVEKKD---D--G-VLVTLE---DGEGGTIEADAVLVAIGRKPNTDGL 277 (454)
T ss_pred HHHHHHHHHHHHhCCeEEEccceEEEEEecC---C--e-EEEEEe---cCCCCEEEeeEEEEccCCccCCCCC
Confidence 4689999999999899999999999998876 3 2 456564 444 7889999999873 555544
No 196
>PRK13748 putative mercuric reductase; Provisional
Probab=90.45 E-value=1.1 Score=42.24 Aligned_cols=53 Identities=9% Similarity=0.006 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.+++.|++|+++++|++|..++ + . ..+.. +++.+++|.||.++..
T Consensus 311 ~~~~~l~~~l~~~gI~i~~~~~v~~i~~~~---~--~-~~v~~----~~~~i~~D~vi~a~G~ 363 (561)
T PRK13748 311 AIGEAVTAAFRAEGIEVLEHTQASQVAHVD---G--E-FVLTT----GHGELRADKLLVATGR 363 (561)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C--E-EEEEe----cCCeEEeCEEEEccCC
Confidence 567888999999999999999999998765 3 2 22333 3346899999999875
No 197
>PRK09126 hypothetical protein; Provisional
Probab=90.39 E-value=1.1 Score=39.93 Aligned_cols=60 Identities=13% Similarity=0.106 Sum_probs=43.2
Q ss_pred hHHHHHHHHH-HCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh-hHhhhC
Q 026885 49 LSGPIRKYIT-DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (231)
Q Consensus 49 l~~~l~~~l~-~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~-~~~~Ll 117 (231)
+.+.+.+.+. ..|++|+.+++|++++.++ + . ..|.++ +|++++||.||.|-..+ .+.+.+
T Consensus 112 l~~~l~~~~~~~~g~~i~~~~~v~~~~~~~---~--~-~~v~~~---~g~~~~a~~vI~AdG~~S~vr~~~ 173 (392)
T PRK09126 112 IRRAAYEAVSQQDGIELLTGTRVTAVRTDD---D--G-AQVTLA---NGRRLTARLLVAADSRFSATRRQL 173 (392)
T ss_pred HHHHHHHHHhhCCCcEEEcCCeEEEEEEcC---C--e-EEEEEc---CCCEEEeCEEEEeCCCCchhhHhc
Confidence 4445555554 4699999999999998765 3 2 346554 78889999999998875 355554
No 198
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=90.38 E-value=1.4 Score=40.63 Aligned_cols=55 Identities=18% Similarity=0.186 Sum_probs=40.2
Q ss_pred HHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEec-----------------CCCeEEecCEEEEcCCh
Q 026885 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA-----------------TDKKVVQADAYVAACDV 110 (231)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~-----------------~~g~~~~aD~vV~a~p~ 110 (231)
...+.+++.|++|++++.+++|..+++ | ++++|++... ++.+++++|.||.++..
T Consensus 325 ~e~~~~~~~GV~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~~D~Vi~a~G~ 396 (467)
T TIGR01318 325 REVANAREEGVEFLFNVQPVYIECDED--G--RVTGVGLVRTALGEPDADGRRRPVPVAGSEFVLPADVVIMAFGF 396 (467)
T ss_pred HHHHHHHhcCCEEEecCCcEEEEECCC--C--eEEEEEEEEEEecccCCCCCccceecCCceEEEECCEEEECCcC
Confidence 344567889999999999999987542 5 7888766310 12246889999999774
No 199
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=90.37 E-value=0.3 Score=47.19 Aligned_cols=52 Identities=25% Similarity=0.348 Sum_probs=45.8
Q ss_pred HHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
-..|++.++++|.++++++.+++|.-++ ++.+++++ +|..+.||.||.++.+
T Consensus 190 g~lL~~~le~~Gi~~~l~~~t~ei~g~~------~~~~vr~~---DG~~i~ad~VV~a~GI 241 (793)
T COG1251 190 GRLLRRKLEDLGIKVLLEKNTEEIVGED------KVEGVRFA---DGTEIPADLVVMAVGI 241 (793)
T ss_pred HHHHHHHHHhhcceeecccchhhhhcCc------ceeeEeec---CCCcccceeEEEeccc
Confidence 4568899999999999999999998743 78999996 9999999999999876
No 200
>PRK06475 salicylate hydroxylase; Provisional
Probab=90.27 E-value=1.6 Score=39.12 Aligned_cols=65 Identities=11% Similarity=0.009 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-HhhhCC
Q 026885 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~Ll~ 118 (231)
.|.+.|.+.+.+. |++|+++++|+++..++ + . ..+++....++++++||.||-|-..+. +.+.++
T Consensus 108 ~l~~~L~~~~~~~~~i~v~~~~~v~~~~~~~---~--~-v~v~~~~~~~~~~~~adlvIgADG~~S~vR~~~~ 174 (400)
T PRK06475 108 DLQSALLDACRNNPGIEIKLGAEMTSQRQTG---N--S-ITATIIRTNSVETVSAAYLIACDGVWSMLRAKAG 174 (400)
T ss_pred HHHHHHHHHHHhcCCcEEEECCEEEEEecCC---C--c-eEEEEEeCCCCcEEecCEEEECCCccHhHHhhcC
Confidence 4567777777664 79999999999998765 3 2 234343223456789999999988764 566654
No 201
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=90.19 E-value=1.3 Score=42.71 Aligned_cols=56 Identities=18% Similarity=0.204 Sum_probs=41.6
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe------cCCC-----------eEEecCEEEEcCCh
Q 026885 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------ATDK-----------KVVQADAYVAACDV 110 (231)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~------~~~g-----------~~~~aD~vV~a~p~ 110 (231)
....+.+++.|++|++++.+++|..+++ | ++++|++.. +.+| .++++|.||.++..
T Consensus 510 ~~e~~~~~~~Gv~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~AiG~ 582 (654)
T PRK12769 510 KKEVKNAREEGANFEFNVQPVALELNEQ--G--HVCGIRFLRTRLGEPDAQGRRRPVPIPGSEFVMPADAVIMAFGF 582 (654)
T ss_pred HHHHHHHHHcCCeEEeccCcEEEEECCC--C--eEEEEEEEEEEecCcCCCCCCcceeCCCceEEEECCEEEECccC
Confidence 3456778899999999999999986542 5 788887632 0112 26899999999874
No 202
>PRK08244 hypothetical protein; Provisional
Probab=90.05 E-value=1.4 Score=40.86 Aligned_cols=64 Identities=9% Similarity=-0.004 Sum_probs=45.7
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC-eEEecCEEEEcCChh-hHhhhCC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACDVP-GIKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g-~~~~aD~vV~a~p~~-~~~~Ll~ 118 (231)
.+-+.|.+.+++.|++|+++++|++++.++ + .+ .+.+.. .+| ++++||.||.|-..+ .+.+.+.
T Consensus 101 ~le~~L~~~~~~~gv~v~~~~~v~~i~~~~---~--~v-~v~~~~-~~g~~~i~a~~vVgADG~~S~vR~~lg 166 (493)
T PRK08244 101 ETEKVLEEHARSLGVEIFRGAEVLAVRQDG---D--GV-EVVVRG-PDGLRTLTSSYVVGADGAGSIVRKQAG 166 (493)
T ss_pred HHHHHHHHHHHHcCCeEEeCCEEEEEEEcC---C--eE-EEEEEe-CCccEEEEeCEEEECCCCChHHHHhcC
Confidence 355677778888999999999999998876 2 23 344432 234 578999999987765 4555553
No 203
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=89.69 E-value=1.5 Score=41.09 Aligned_cols=55 Identities=13% Similarity=0.142 Sum_probs=40.9
Q ss_pred HHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEEecC--CCeEEecCEEEEcCCh
Q 026885 51 GPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT--DKKVVQADAYVAACDV 110 (231)
Q Consensus 51 ~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~--~g~~~~aD~vV~a~p~ 110 (231)
..+.+.+++ .|++|++++.|++|.-++ + ++.+|.+.... +++++++|.||.++..
T Consensus 391 ~~l~~~l~~~~gV~i~~~~~v~~i~~~~---~--~v~~v~~~~~~~~~~~~i~~D~vi~a~G~ 448 (515)
T TIGR03140 391 KVLQDKLKSLPNVDILTSAQTTEIVGDG---D--KVTGIRYQDRNSGEEKQLDLDGVFVQIGL 448 (515)
T ss_pred HHHHHHHhcCCCCEEEECCeeEEEEcCC---C--EEEEEEEEECCCCcEEEEEcCEEEEEeCC
Confidence 345677776 599999999999997664 4 67788775322 2357899999988764
No 204
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=89.69 E-value=1.6 Score=39.22 Aligned_cols=62 Identities=15% Similarity=0.169 Sum_probs=47.1
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh-hHhhhC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~-~~~~Ll 117 (231)
.+.+-|++..++.|++++.+++|+.+..+++ + .+.++.. ++.++.|+.||.|-.+. .+.+.+
T Consensus 96 ~fd~~La~~A~~aGae~~~~~~~~~~~~~~~--~--~~~~~~~----~~~e~~a~~vI~AdG~~s~l~~~l 158 (396)
T COG0644 96 KFDKWLAERAEEAGAELYPGTRVTGVIREDD--G--VVVGVRA----GDDEVRAKVVIDADGVNSALARKL 158 (396)
T ss_pred HhhHHHHHHHHHcCCEEEeceEEEEEEEeCC--c--EEEEEEc----CCEEEEcCEEEECCCcchHHHHHh
Confidence 4566688899999999999999999999984 4 3433322 44788999999998875 354443
No 205
>TIGR00031 UDP-GALP_mutase UDP-galactopyranose mutase. The gene is known as glf, ceoA, and rfbD. It is known experimentally in E. coli, Mycobacterium tuberculosis, and Klebsiella pneumoniae.
Probab=89.64 E-value=0.25 Score=44.47 Aligned_cols=87 Identities=8% Similarity=0.028 Sum_probs=56.0
Q ss_pred CCCCCcccHHHHHHHHHHHHhcc---ccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEE
Q 026885 11 FIDCDNISARCMLTIFALFATKT---EASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKG 87 (231)
Q Consensus 11 ~~~~~~~Sa~~~~~~l~~~~~~~---~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~ 87 (231)
+.+|+++|+.|+..+=.++-... ...-.|||++|+. .+++.|. +..+.+|++|+.+..+..++ + .
T Consensus 160 g~~p~el~~~~~~RvP~~~~~d~~yf~d~~q~~P~~Gyt-~~~~~ml---~~~~i~v~l~~~~~~~~~~~---~-----~ 227 (377)
T TIGR00031 160 GLPAEEIDPFVIGRVPVVLSEDSSYFPDRYQGLPKGGYT-KLFEKML---DHPLIDVKLNCHINLLKDKD---S-----Q 227 (377)
T ss_pred CCChHHCCHHHeEecceEecCCCCcccccccccccccHH-HHHHHHH---hcCCCEEEeCCccceeeccc---c-----c
Confidence 56789999998763322332211 1224899998863 5665444 55788999999888887654 2 2
Q ss_pred EEEEecCCCeEEecCEEEEcCChhhHh
Q 026885 88 LAMSKATDKKVVQADAYVAACDVPGIK 114 (231)
Q Consensus 88 v~~~~~~~g~~~~aD~vV~a~p~~~~~ 114 (231)
+.+ +++.+. |.||++.|++.+-
T Consensus 228 ~~~----~~~~~~-~~vi~Tg~id~~f 249 (377)
T TIGR00031 228 LHF----ANKAIR-KPVIYTGLIDQLF 249 (377)
T ss_pred eee----cccccc-CcEEEecCchHHH
Confidence 444 222333 8899999987654
No 206
>COG0446 HcaD Uncharacterized NAD(FAD)-dependent dehydrogenases [General function prediction only]
Probab=89.63 E-value=1.2 Score=39.44 Aligned_cols=56 Identities=9% Similarity=-0.002 Sum_probs=45.6
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEE--EEEEecCCCeEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKG--LAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~--v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
..+.+.+.+.++++|+++++++++.+|...+ + .+.. +.. .+++.+++|.++.+.+.
T Consensus 178 ~~~~~~~~~~l~~~gi~~~~~~~~~~i~~~~---~--~~~~~~~~~---~~~~~~~~d~~~~~~g~ 235 (415)
T COG0446 178 PEVAEELAELLEKYGVELLLGTKVVGVEGKG---N--TLVVERVVG---IDGEEIKADLVIIGPGE 235 (415)
T ss_pred HHHHHHHHHHHHHCCcEEEeCCceEEEEccc---C--cceeeEEEE---eCCcEEEeeEEEEeecc
Confidence 3578999999999999999999999999876 3 3333 334 27888999999999875
No 207
>PRK08850 2-octaprenyl-6-methoxyphenol hydroxylase; Validated
Probab=89.60 E-value=1.1 Score=40.24 Aligned_cols=61 Identities=11% Similarity=0.184 Sum_probs=45.2
Q ss_pred hHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026885 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (231)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~-~~~~Ll~ 118 (231)
+.+.|.+.+.+. |++|+++++|++|+.+++ + ..|.+. +|++++||.||.|-..+ .+.+.+.
T Consensus 113 l~~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~----~~v~~~---~g~~~~a~lvIgADG~~S~vR~~~~ 175 (405)
T PRK08850 113 IQLALLEQVQKQDNVTLLMPARCQSIAVGES--E----AWLTLD---NGQALTAKLVVGADGANSWLRRQMD 175 (405)
T ss_pred HHHHHHHHHhcCCCeEEEcCCeeEEEEeeCC--e----EEEEEC---CCCEEEeCEEEEeCCCCChhHHHcC
Confidence 455677777664 799999999999987762 2 346563 78899999999998875 4555553
No 208
>PRK06996 hypothetical protein; Provisional
Probab=89.45 E-value=1.2 Score=39.91 Aligned_cols=55 Identities=15% Similarity=0.110 Sum_probs=40.9
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC-eEEecCEEEEcCC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK-KVVQADAYVAACD 109 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g-~~~~aD~vV~a~p 109 (231)
.+-+.|.+.+++.|++++++++|++++.+++ + ..+.+.+ ++| ++++||.||-|-.
T Consensus 116 ~l~~~L~~~~~~~g~~~~~~~~v~~~~~~~~--~----v~v~~~~-~~g~~~i~a~lvIgADG 171 (398)
T PRK06996 116 SLVAALARAVRGTPVRWLTSTTAHAPAQDAD--G----VTLALGT-PQGARTLRARIAVQAEG 171 (398)
T ss_pred HHHHHHHHHHHhCCCEEEcCCeeeeeeecCC--e----EEEEECC-CCcceEEeeeEEEECCC
Confidence 5678899999999999999999999976652 2 2233321 122 6899999999855
No 209
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=89.35 E-value=1.5 Score=40.98 Aligned_cols=54 Identities=7% Similarity=0.087 Sum_probs=44.5
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.+++.|++++++++|+.|..++ + ...|.+. +|+.+.+|.||.|+..
T Consensus 267 ~l~~~l~~~~~~~gv~i~~~~~V~~I~~~~---~---~~~V~~~---~g~~i~a~~vViAtG~ 320 (517)
T PRK15317 267 KLAAALEEHVKEYDVDIMNLQRASKLEPAA---G---LIEVELA---NGAVLKAKTVILATGA 320 (517)
T ss_pred HHHHHHHHHHHHCCCEEEcCCEEEEEEecC---C---eEEEEEC---CCCEEEcCEEEECCCC
Confidence 578899999999999999999999998875 2 2345553 6778999999999875
No 210
>PRK08243 4-hydroxybenzoate 3-monooxygenase; Validated
Probab=89.35 E-value=1.3 Score=39.66 Aligned_cols=63 Identities=11% Similarity=0.104 Sum_probs=44.6
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEe-ccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCChhh-HhhhCC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILY-DKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG-IKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~-~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~~~-~~~Ll~ 118 (231)
.+.+.|.+..++.|++++++++|++++. ++ . ...|++. .+|+ +++||.||-|-..+. +.+.++
T Consensus 104 ~l~~~Ll~~a~~~gv~v~~~~~v~~i~~~~~---~---~~~V~~~--~~G~~~~i~ad~vVgADG~~S~vR~~~~ 170 (392)
T PRK08243 104 EVTRDLMAARLAAGGPIRFEASDVALHDFDS---D---RPYVTYE--KDGEEHRLDCDFIAGCDGFHGVSRASIP 170 (392)
T ss_pred HHHHHHHHHHHhCCCeEEEeeeEEEEEecCC---C---ceEEEEE--cCCeEEEEEeCEEEECCCCCCchhhhcC
Confidence 3456777777889999999999999976 33 2 2345553 2453 688999998877764 556654
No 211
>TIGR01372 soxA sarcosine oxidase, alpha subunit family, heterotetrameric form. This model describes the alpha subunit of a family of known and putative heterotetrameric sarcosine oxidases. Five operons of such oxidases are found in Mesorhizobium loti and three in Agrobacterium tumefaciens, a high enough copy number to suggest that not all members are share the same function. The model is designated as subfamily rather than equivalog for this reason.Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms
Probab=89.04 E-value=1.7 Score=44.05 Aligned_cols=56 Identities=18% Similarity=0.104 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe-cCCCeEEecCEEEEcCCh
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-ATDKKVVQADAYVAACDV 110 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~-~~~g~~~~aD~vV~a~p~ 110 (231)
+...+.+.+++.|++|++++.|++|.-++ ++.+|++.. +++++++++|.|+.+...
T Consensus 353 ~~~~l~~~L~~~GV~i~~~~~v~~i~g~~------~v~~V~l~~~~g~~~~i~~D~V~va~G~ 409 (985)
T TIGR01372 353 VSPEARAEARELGIEVLTGHVVAATEGGK------RVSGVAVARNGGAGQRLEADALAVSGGW 409 (985)
T ss_pred hhHHHHHHHHHcCCEEEcCCeEEEEecCC------cEEEEEEEecCCceEEEECCEEEEcCCc
Confidence 45667888999999999999999997543 567777652 235678999999999875
No 212
>PLN02697 lycopene epsilon cyclase
Probab=88.88 E-value=1.8 Score=40.81 Aligned_cols=56 Identities=14% Similarity=0.153 Sum_probs=43.5
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
.|.+.|.+.+.+.|+++ ++++|++|..++ + .+..+.+. +|+++.||.||.|..+..
T Consensus 193 ~L~~~Ll~~a~~~GV~~-~~~~V~~I~~~~---~--~~~vv~~~---dG~~i~A~lVI~AdG~~S 248 (529)
T PLN02697 193 LLHEELLRRCVESGVSY-LSSKVDRITEAS---D--GLRLVACE---DGRVIPCRLATVASGAAS 248 (529)
T ss_pred HHHHHHHHHHHhcCCEE-EeeEEEEEEEcC---C--cEEEEEEc---CCcEEECCEEEECCCcCh
Confidence 56788899999999998 788999998775 2 23333332 778899999999988765
No 213
>PRK12831 putative oxidoreductase; Provisional
Probab=88.70 E-value=1.9 Score=39.79 Aligned_cols=52 Identities=25% Similarity=0.317 Sum_probs=38.4
Q ss_pred HHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe------cC---------CC--eEEecCEEEEcCCh
Q 026885 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------AT---------DK--KVVQADAYVAACDV 110 (231)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~------~~---------~g--~~~~aD~vV~a~p~ 110 (231)
+.+++.|++|++++.+.+|..+++ | ++.+|++.. +. +| ..+++|.||.++..
T Consensus 326 ~~a~~eGV~i~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~d~~Gr~~~~~~~g~~~~i~~D~Vi~AiG~ 394 (464)
T PRK12831 326 HHAKEEGVIFDLLTNPVEILGDEN--G--WVKGMKCIKMELGEPDASGRRRPVEIEGSEFVLEVDTVIMSLGT 394 (464)
T ss_pred HHHHHcCCEEEecccceEEEecCC--C--eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECCCC
Confidence 456789999999999999987542 5 788876631 00 12 26899999999875
No 214
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=88.64 E-value=1.3 Score=39.30 Aligned_cols=62 Identities=10% Similarity=0.062 Sum_probs=46.0
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~-~~~~Ll~ 118 (231)
.+.+.|.+.+++.|+..+++++|++++.++ + .+ .|.+. +|++++||.||.|-..+ .+.+.+.
T Consensus 112 ~l~~~L~~~~~~~~~~~~~~~~v~~i~~~~---~--~~-~v~~~---~g~~~~a~~vI~AdG~~S~vr~~~g 174 (388)
T PRK07494 112 LLNRALEARVAELPNITRFGDEAESVRPRE---D--EV-TVTLA---DGTTLSARLVVGADGRNSPVREAAG 174 (388)
T ss_pred HHHHHHHHHHhcCCCcEEECCeeEEEEEcC---C--eE-EEEEC---CCCEEEEeEEEEecCCCchhHHhcC
Confidence 467888888888876669999999998876 2 23 35553 77889999999988765 3555543
No 215
>PRK05732 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=88.59 E-value=1.6 Score=38.73 Aligned_cols=60 Identities=12% Similarity=0.146 Sum_probs=43.0
Q ss_pred hHHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh-hHhhhC
Q 026885 49 LSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLL 117 (231)
Q Consensus 49 l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~-~~~~Ll 117 (231)
+-+.|.+.+++ .|++++++++|+++..++ + . ..|++. +|+++.+|.||.|...+ .+.+.+
T Consensus 114 l~~~l~~~~~~~~g~~~~~~~~v~~i~~~~---~--~-~~v~~~---~g~~~~a~~vI~AdG~~S~vr~~~ 175 (395)
T PRK05732 114 VGQRLFALLDKAPGVTLHCPARVANVERTQ---G--S-VRVTLD---DGETLTGRLLVAADGSHSALREAL 175 (395)
T ss_pred HHHHHHHHHhcCCCcEEEcCCEEEEEEEcC---C--e-EEEEEC---CCCEEEeCEEEEecCCChhhHHhh
Confidence 34566666666 479999999999998765 3 2 335553 67788999999998865 355544
No 216
>PLN02546 glutathione reductase
Probab=88.48 E-value=1.8 Score=41.04 Aligned_cols=58 Identities=14% Similarity=0.092 Sum_probs=41.8
Q ss_pred cchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 46 DVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+.+.+.+.+.++++|++|+++++|++|..+++ + .+ .+.. .+++...+|.||.++...
T Consensus 292 d~~~~~~l~~~L~~~GV~i~~~~~v~~i~~~~~--g--~v-~v~~---~~g~~~~~D~Viva~G~~ 349 (558)
T PLN02546 292 DEEVRDFVAEQMSLRGIEFHTEESPQAIIKSAD--G--SL-SLKT---NKGTVEGFSHVMFATGRK 349 (558)
T ss_pred CHHHHHHHHHHHHHCCcEEEeCCEEEEEEEcCC--C--EE-EEEE---CCeEEEecCEEEEeeccc
Confidence 345667788999999999999999999986542 3 22 3433 245555589999998753
No 217
>PRK05192 tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA; Validated
Probab=88.42 E-value=1.4 Score=42.12 Aligned_cols=54 Identities=13% Similarity=0.239 Sum_probs=43.6
Q ss_pred hhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+...|.+.+++. |+++ +.+.|++|..++ + ++.||.+. +|..+.|+.||.|+..
T Consensus 101 ly~kaL~e~L~~~~nV~I-~q~~V~~Li~e~---g--rV~GV~t~---dG~~I~Ak~VIlATGT 155 (618)
T PRK05192 101 LYRAAMREILENQPNLDL-FQGEVEDLIVEN---G--RVVGVVTQ---DGLEFRAKAVVLTTGT 155 (618)
T ss_pred HHHHHHHHHHHcCCCcEE-EEeEEEEEEecC---C--EEEEEEEC---CCCEEECCEEEEeeCc
Confidence 4567788888877 6777 577899998886 5 89999885 7889999999988774
No 218
>TIGR01790 carotene-cycl lycopene cyclase family protein. This family includes lycopene beta and epsilion cyclases (which form beta and delta carotene, respectively) from bacteria and plants as well as the plant capsanthin/capsorubin and neoxanthin cyclases which appear to have evolved from the plant lycopene cyclases. The plant lycopene epsilon cyclases also transform neurosporene to alpha zeacarotene.
Probab=88.26 E-value=1.7 Score=38.57 Aligned_cols=57 Identities=11% Similarity=0.007 Sum_probs=43.9
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
..+.+.|.+.+.+.|++++ +++|+.+..++ + ....|.+. +|+.++||.||.|.....
T Consensus 85 ~~l~~~l~~~~~~~gv~~~-~~~v~~i~~~~---~--~~~~v~~~---~g~~~~a~~VI~A~G~~s 141 (388)
T TIGR01790 85 TRLHEELLQKCPEGGVLWL-ERKAIHAEADG---V--ALSTVYCA---GGQRIQARLVIDARGFGP 141 (388)
T ss_pred HHHHHHHHHHHHhcCcEEE-ccEEEEEEecC---C--ceeEEEeC---CCCEEEeCEEEECCCCch
Confidence 3577889999999999886 66899988774 2 23456553 677899999999999765
No 219
>PRK06126 hypothetical protein; Provisional
Probab=88.12 E-value=2.6 Score=39.56 Aligned_cols=64 Identities=14% Similarity=0.140 Sum_probs=44.2
Q ss_pred hHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCChhh-HhhhCC
Q 026885 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG-IKRLLP 118 (231)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~~~-~~~Ll~ 118 (231)
+-+.|.+.+++. |++|+++++|++|..++ + .++ +.+....+|+ ++.+|.||.|-..+. +.+.+.
T Consensus 128 l~~~L~~~~~~~~~v~i~~~~~v~~i~~~~---~--~v~-v~~~~~~~g~~~~i~ad~vVgADG~~S~VR~~lg 195 (545)
T PRK06126 128 LEPILLEHAAAQPGVTLRYGHRLTDFEQDA---D--GVT-ATVEDLDGGESLTIRADYLVGCDGARSAVRRSLG 195 (545)
T ss_pred HHHHHHHHHHhCCCceEEeccEEEEEEECC---C--eEE-EEEEECCCCcEEEEEEEEEEecCCcchHHHHhcC
Confidence 445667777664 79999999999999876 3 344 4443222453 688999999988754 555554
No 220
>PRK05868 hypothetical protein; Validated
Probab=88.04 E-value=1.5 Score=39.07 Aligned_cols=50 Identities=10% Similarity=0.115 Sum_probs=37.8
Q ss_pred HCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-HhhhC
Q 026885 59 DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (231)
Q Consensus 59 ~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~Ll 117 (231)
..|++++++++|+.|+.++ + . ..|.+. +|++++||.||-|-..+. +.+.+
T Consensus 116 ~~~v~i~~~~~v~~i~~~~---~--~-v~v~~~---dg~~~~adlvIgADG~~S~vR~~~ 166 (372)
T PRK05868 116 QPSVEYLFDDSISTLQDDG---D--S-VRVTFE---RAAAREFDLVIGADGLHSNVRRLV 166 (372)
T ss_pred cCCcEEEeCCEEEEEEecC---C--e-EEEEEC---CCCeEEeCEEEECCCCCchHHHHh
Confidence 4689999999999998765 2 2 345554 788899999999988764 55544
No 221
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=87.86 E-value=1.9 Score=38.43 Aligned_cols=59 Identities=5% Similarity=0.034 Sum_probs=42.9
Q ss_pred HHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-HhhhC
Q 026885 50 SGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (231)
Q Consensus 50 ~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~Ll 117 (231)
-..|.+.+++. |++|+.+++|++++.+++ + + .|.+. +|++++||.||.|-..+. +.+.+
T Consensus 113 ~~~L~~~~~~~~~i~i~~~~~v~~~~~~~~--~---~-~v~~~---~g~~~~~~lvIgADG~~S~vR~~~ 173 (384)
T PRK08849 113 QLGLWQQFAQYPNLTLMCPEKLADLEFSAE--G---N-RVTLE---SGAEIEAKWVIGADGANSQVRQLA 173 (384)
T ss_pred HHHHHHHHHhCCCeEEECCCceeEEEEcCC--e---E-EEEEC---CCCEEEeeEEEEecCCCchhHHhc
Confidence 33555555554 699999999999998762 3 3 46564 788999999999988764 55544
No 222
>PRK12770 putative glutamate synthase subunit beta; Provisional
Probab=87.47 E-value=2.3 Score=37.50 Aligned_cols=55 Identities=20% Similarity=0.135 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe-----------------cCCCeEEecCEEEEcCChh
Q 026885 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-----------------ATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~-----------------~~~g~~~~aD~vV~a~p~~ 111 (231)
..+.+.++++|++|++++.|.+++-++ ++.+|.+.. .++++.+++|.||.++...
T Consensus 214 ~~~~~~l~~~gi~i~~~~~v~~i~~~~------~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~D~vi~a~G~~ 285 (352)
T PRK12770 214 KYEIERLIARGVEFLELVTPVRIIGEG------RVEGVELAKMRLGEPDESGRPRPVPIPGSEFVLEADTVVFAIGEI 285 (352)
T ss_pred HHHHHHHHHcCCEEeeccCceeeecCC------cEeEEEEEEEEecCcCcccCcCceecCCCeEEEECCEEEECcccC
Confidence 456677999999999999999987432 455555421 1244678999999987753
No 223
>TIGR00136 gidA glucose-inhibited division protein A. GidA, the longer of two forms of GidA-related proteins, appears to be present in all complete eubacterial genomes so far, as well as Saccharomyces cerevisiae. A subset of these organisms have a closely related protein. GidA is absent in the Archaea. It appears to act with MnmE, in an alpha2/beta2 heterotetramer, in the 5-carboxymethylaminomethyl modification of uridine 34 in certain tRNAs. The shorter, related protein, previously called gid or gidA(S), is now called TrmFO (see model TIGR00137).
Probab=87.39 E-value=1.9 Score=41.22 Aligned_cols=56 Identities=11% Similarity=0.198 Sum_probs=43.2
Q ss_pred hhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+...|.+.+++. |++++ ...|+.+..+++ + ++.+|.+. +|..+.||.||.|+...
T Consensus 97 ~y~~~L~e~Le~~pgV~Il-e~~Vv~li~e~~--g--~V~GV~t~---~G~~I~Ad~VILATGtf 153 (617)
T TIGR00136 97 LYRKAMRNALENQPNLSLF-QGEVEDLILEDN--D--EIKGVVTQ---DGLKFRAKAVIITTGTF 153 (617)
T ss_pred HHHHHHHHHHHcCCCcEEE-EeEEEEEEEecC--C--cEEEEEEC---CCCEEECCEEEEccCcc
Confidence 4567888889988 56665 557888877632 5 78999885 78889999999998764
No 224
>TIGR02061 aprA adenosine phosphosulphate reductase, alpha subunit. During dissimilatory sulfate reduction or sulfur oxidation, adenylylsulfate (APS) reductase catalyzes reversibly the two-electron reduction of APS to sulfite and AMP. Found in several bacterial lineages and in Archaeoglobales, APS reductase is a heterodimer composed of an alpha subunit containing a noncovalently bound FAD, and a beta subunit containing two [4Fe-4S] clusters. Described by this model is the alpha subunit of APS reductase, sharing common evolutionary origin with fumarate reductase/succinate dehydrogenase flavoproteins.
Probab=87.29 E-value=3.3 Score=39.81 Aligned_cols=61 Identities=15% Similarity=0.106 Sum_probs=44.4
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
.+...+.+.+++.|++|+.+++|++|.++++.+| ++.||......+|+ .+.|+.||+|+.-
T Consensus 127 ~~~r~l~~~l~~~~~~i~~~~~v~~Ll~d~~~~G--rV~Gv~~~~~~~g~~~~i~AkaVVLATGG 189 (614)
T TIGR02061 127 SYKPIVAEAAKNALGDIFERIFIVKLLLDKNTPN--RIAGAVGFNVRANEVHVFKAKTVIVAAGG 189 (614)
T ss_pred hHHHHHHHHHHhCCCeEEcccEEEEEEecCCCCC--eEEEEEEEEeCCCcEEEEECCEEEECCCc
Confidence 4555666677788899999999999998641004 89998764322444 5679999999875
No 225
>PLN02463 lycopene beta cyclase
Probab=87.26 E-value=2.2 Score=39.28 Aligned_cols=54 Identities=15% Similarity=0.201 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+.+.|.+.+.+.|++++ +++|++|+.++ + + ..|.+. +|++++||.||.|....
T Consensus 115 ~L~~~Ll~~~~~~GV~~~-~~~V~~I~~~~---~--~-~~V~~~---dG~~i~A~lVI~AdG~~ 168 (447)
T PLN02463 115 KLKSKMLERCIANGVQFH-QAKVKKVVHEE---S--K-SLVVCD---DGVKIQASLVLDATGFS 168 (447)
T ss_pred HHHHHHHHHHhhcCCEEE-eeEEEEEEEcC---C--e-EEEEEC---CCCEEEcCEEEECcCCC
Confidence 566778888888999996 67999998876 3 2 456664 78889999999998654
No 226
>KOG0404 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=87.24 E-value=1.1 Score=37.60 Aligned_cols=71 Identities=20% Similarity=0.132 Sum_probs=53.6
Q ss_pred eeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhhHhhhC
Q 026885 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPGIKRLL 117 (231)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~~~~Ll 117 (231)
.|||.|-.+..|.+.|.+.-++.|-+|.+. .|+++..+. +-..+.. +.+.+.||+||.++...+=+-.+
T Consensus 61 PGFPdgi~G~~l~d~mrkqs~r~Gt~i~tE-tVskv~~ss------kpF~l~t----d~~~v~~~avI~atGAsAkRl~~ 129 (322)
T KOG0404|consen 61 PGFPDGITGPELMDKMRKQSERFGTEIITE-TVSKVDLSS------KPFKLWT----DARPVTADAVILATGASAKRLHL 129 (322)
T ss_pred CCCCcccccHHHHHHHHHHHHhhcceeeee-ehhhccccC------CCeEEEe----cCCceeeeeEEEecccceeeeec
Confidence 788888777789999999999999998764 588888875 3444544 67778999999998865433235
Q ss_pred CC
Q 026885 118 PS 119 (231)
Q Consensus 118 ~~ 119 (231)
|.
T Consensus 130 pg 131 (322)
T KOG0404|consen 130 PG 131 (322)
T ss_pred CC
Confidence 54
No 227
>KOG1335 consensus Dihydrolipoamide dehydrogenase [Energy production and conversion]
Probab=87.09 E-value=2.6 Score=38.10 Aligned_cols=60 Identities=15% Similarity=0.221 Sum_probs=45.9
Q ss_pred CcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEec--CCCeEEecCEEEEcCC
Q 026885 45 PDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--TDKKVVQADAYVAACD 109 (231)
Q Consensus 45 ~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~--~~g~~~~aD~vV~a~p 109 (231)
....+.+...+.|+.+|.+++++++|+....+++ | .+ .|++... ...++++||....++.
T Consensus 250 mD~Eisk~~qr~L~kQgikF~l~tkv~~a~~~~d--g--~v-~i~ve~ak~~k~~tle~DvlLVsiG 311 (506)
T KOG1335|consen 250 MDGEISKAFQRVLQKQGIKFKLGTKVTSATRNGD--G--PV-EIEVENAKTGKKETLECDVLLVSIG 311 (506)
T ss_pred cCHHHHHHHHHHHHhcCceeEeccEEEEeeccCC--C--ce-EEEEEecCCCceeEEEeeEEEEEcc
Confidence 4346889999999999999999999999999885 5 33 4545432 2345788998777765
No 228
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=86.65 E-value=3.1 Score=36.74 Aligned_cols=55 Identities=16% Similarity=0.100 Sum_probs=43.0
Q ss_pred hhHHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
.+...+.+.++++| ..+..+++|..+..++ ++.+|.+. +|+ +.||.||.++....
T Consensus 157 ~~~~~l~~~~~~~G~~~~~~~~~~~~~~~~~------~~~~v~t~---~g~-i~a~~vv~a~G~~~ 212 (387)
T COG0665 157 LLTRALAAAAEELGVVIIEGGTPVTSLERDG------RVVGVETD---GGT-IEADKVVLAAGAWA 212 (387)
T ss_pred HHHHHHHHHHHhcCCeEEEccceEEEEEecC------cEEEEEeC---Ccc-EEeCEEEEcCchHH
Confidence 67889999999999 5677799999998751 24567663 454 89999999988653
No 229
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=86.63 E-value=2.7 Score=39.25 Aligned_cols=55 Identities=11% Similarity=0.088 Sum_probs=41.0
Q ss_pred HHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCCh
Q 026885 51 GPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (231)
Q Consensus 51 ~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~ 110 (231)
+.+.+.+++ .|++|++++.|++|.-++ + ++.++.+....+| +++++|.|+.++..
T Consensus 390 ~~l~~~l~~~~gI~i~~~~~v~~i~~~~---g--~v~~v~~~~~~~g~~~~i~~D~v~~~~G~ 447 (517)
T PRK15317 390 QVLQDKLRSLPNVTIITNAQTTEVTGDG---D--KVTGLTYKDRTTGEEHHLELEGVFVQIGL 447 (517)
T ss_pred HHHHHHHhcCCCcEEEECcEEEEEEcCC---C--cEEEEEEEECCCCcEEEEEcCEEEEeECC
Confidence 455666776 599999999999998664 4 7788877532233 46889999998765
No 230
>PLN02661 Putative thiazole synthesis
Probab=86.35 E-value=3.4 Score=36.91 Aligned_cols=58 Identities=12% Similarity=0.240 Sum_probs=42.8
Q ss_pred hhHHHHHHHHH-HCCcEEEcCceeeEEEeccCCCCcceEEEEEEE------ecCC-----CeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYIT-DKGGRFHLRWGCREILYDKAANAETYVKGLAMS------KATD-----KKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~-~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~------~~~~-----g~~~~aD~vV~a~p~ 110 (231)
.+.+.|.+.+. +.|++|+.++.|..+..++ + ++.||.+. .... ...+.|++||+|+..
T Consensus 173 e~~stLi~ka~~~~gVkI~~~t~V~DLI~~~---g--rVaGVVvnw~~v~~~~~~~s~~dp~~I~AkaVVlATGh 242 (357)
T PLN02661 173 LFTSTIMSKLLARPNVKLFNAVAAEDLIVKG---D--RVGGVVTNWALVAQNHDTQSCMDPNVMEAKVVVSSCGH 242 (357)
T ss_pred HHHHHHHHHHHhcCCCEEEeCeEeeeEEecC---C--EEEEEEeecchhhhccCCCCccceeEEECCEEEEcCCC
Confidence 45567776554 4789999999999999986 5 89998752 1111 136899999999884
No 231
>PRK02106 choline dehydrogenase; Validated
Probab=85.84 E-value=1.3 Score=41.72 Aligned_cols=47 Identities=6% Similarity=0.053 Sum_probs=35.7
Q ss_pred HCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCC-CeEEecCEEEEcCCh
Q 026885 59 DKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD-KKVVQADAYVAACDV 110 (231)
Q Consensus 59 ~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~-g~~~~aD~vV~a~p~ 110 (231)
+.+.+|++++.|++|.+++ + +++||++..... -..+.++.||+++..
T Consensus 213 ~~nl~i~~~a~V~rI~~~~---~--~a~GV~~~~~~~~~~~~~ak~VILaaGa 260 (560)
T PRK02106 213 RPNLTIVTHALTDRILFEG---K--RAVGVEYERGGGRETARARREVILSAGA 260 (560)
T ss_pred CCCcEEEcCCEEEEEEEeC---C--eEEEEEEEeCCcEEEEEeeeeEEEccCC
Confidence 4569999999999999986 5 899998863211 123568988888774
No 232
>PRK04965 NADH:flavorubredoxin oxidoreductase; Provisional
Probab=85.69 E-value=2.5 Score=37.62 Aligned_cols=47 Identities=13% Similarity=0.001 Sum_probs=36.9
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
..++.++.|++++++++|++|..++ . .|.+ +++.+.+|.+|.|+...
T Consensus 64 ~~~~~~~~gv~~~~~~~V~~id~~~---~-----~v~~----~~~~~~yd~LVlATG~~ 110 (377)
T PRK04965 64 AGEFAEQFNLRLFPHTWVTDIDAEA---Q-----VVKS----QGNQWQYDKLVLATGAS 110 (377)
T ss_pred HHHHHHhCCCEEECCCEEEEEECCC---C-----EEEE----CCeEEeCCEEEECCCCC
Confidence 4566788899999999999998875 2 2434 67789999999998753
No 233
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=85.57 E-value=3.8 Score=39.48 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=38.0
Q ss_pred HHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEec-----------------CCCeEEecCEEEEcCCh
Q 026885 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA-----------------TDKKVVQADAYVAACDV 110 (231)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~-----------------~~g~~~~aD~vV~a~p~ 110 (231)
+..++.|++|++++.+++|..+++ | +++++.+... ++..++++|.||.++..
T Consensus 497 ~~a~~eGv~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~g~~~~~~~~g~~~~i~aD~Vi~AiG~ 565 (639)
T PRK12809 497 VNAREEGVEFQFNVQPQYIACDED--G--RLTAVGLIRTAMGEPGPDGRRRPRPVAGSEFELPADVLIMAFGF 565 (639)
T ss_pred HHHHHcCCeEEeccCCEEEEECCC--C--eEEEEEEEEEEecCcCCCCCccceecCCceEEEECCEEEECcCC
Confidence 345788999999999999987653 5 7888755210 11236889999999874
No 234
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=85.40 E-value=4.5 Score=38.02 Aligned_cols=63 Identities=13% Similarity=0.149 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe-EEecCEEEEcCChhh-HhhhCC
Q 026885 49 LSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK-VVQADAYVAACDVPG-IKRLLP 118 (231)
Q Consensus 49 l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~-~~~aD~vV~a~p~~~-~~~Ll~ 118 (231)
+-+.|.+.+++. |++|+++++|++++.+++ + + .+.+.. .+|+ ++.||.||.|...+. +.+.+.
T Consensus 127 le~~L~~~~~~~~~v~v~~~~~v~~i~~~~~--~---v-~v~~~~-~~g~~~i~ad~vVgADG~~S~vR~~lg 192 (547)
T PRK08132 127 VEGYLVERAQALPNIDLRWKNKVTGLEQHDD--G---V-TLTVET-PDGPYTLEADWVIACDGARSPLREMLG 192 (547)
T ss_pred HHHHHHHHHHhCCCcEEEeCCEEEEEEEcCC--E---E-EEEEEC-CCCcEEEEeCEEEECCCCCcHHHHHcC
Confidence 345567777775 689999999999998762 2 2 233321 2443 689999999988654 556654
No 235
>TIGR01989 COQ6 Ubiquinone biosynthesis mono0xygenase COQ6. This model represents the monooxygenase responsible for the 4-hydroxylateion of the phenol ring in the aerobic biosynthesis of ubiquinone
Probab=85.37 E-value=3 Score=38.03 Aligned_cols=65 Identities=8% Similarity=0.078 Sum_probs=46.1
Q ss_pred hhHHHHHHHHHHCC---cEEEcCceeeEEEec----cCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh-hHhhhCC
Q 026885 48 YLSGPIRKYITDKG---GRFHLRWGCREILYD----KAANAETYVKGLAMSKATDKKVVQADAYVAACDVP-GIKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~G---g~i~~~~~V~~i~~~----~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~-~~~~Ll~ 118 (231)
.+.+.|.+.+++.+ ++++++++|++|+.+ ++ ++ ....|.+. +|+++.||.||.|-..+ .+.+.+.
T Consensus 118 ~l~~~L~~~~~~~~~~~v~i~~~~~v~~i~~~~~~~~~-~~--~~v~v~~~---~g~~i~a~llVgADG~~S~vR~~~g 190 (437)
T TIGR01989 118 NIQNSLYNRLQEYNGDNVKILNPARLISVTIPSKYPND-NS--NWVHITLS---DGQVLYTKLLIGADGSNSNVRKAAN 190 (437)
T ss_pred HHHHHHHHHHHhCCCCCeEEecCCeeEEEEeccccccC-CC--CceEEEEc---CCCEEEeeEEEEecCCCChhHHHcC
Confidence 35677888888876 899999999999863 10 01 12345553 78899999999887765 4555553
No 236
>TIGR02374 nitri_red_nirB nitrite reductase [NAD(P)H], large subunit.
Probab=85.00 E-value=2.1 Score=42.31 Aligned_cols=49 Identities=10% Similarity=0.051 Sum_probs=39.3
Q ss_pred HHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
...+++++.|++++++++|++|..++ . .|.+. +|+.+.+|.+|.|+...
T Consensus 59 ~~~~~~~~~gv~~~~g~~V~~Id~~~---k-----~V~~~---~g~~~~yD~LVlATGs~ 107 (785)
T TIGR02374 59 NSKDWYEKHGITLYTGETVIQIDTDQ---K-----QVITD---AGRTLSYDKLILATGSY 107 (785)
T ss_pred CCHHHHHHCCCEEEcCCeEEEEECCC---C-----EEEEC---CCcEeeCCEEEECCCCC
Confidence 34677889999999999999998875 2 35553 78889999999998753
No 237
>KOG2404 consensus Fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=84.87 E-value=2.3 Score=37.66 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=42.2
Q ss_pred hhHHHHHHHHHHCC------cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCC
Q 026885 48 YLSGPIRKYITDKG------GRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACD 109 (231)
Q Consensus 48 ~l~~~l~~~l~~~G------g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p 109 (231)
.++.+|...+++.- ++|.+|++|+.|..++ | +|.||+..+ .+| ..+.+|.||++..
T Consensus 140 ei~~~L~~~l~k~as~~pe~~ki~~nskvv~il~n~---g--kVsgVeymd-~sgek~~~~~~~VVlatG 203 (477)
T KOG2404|consen 140 EIVKALSTRLKKKASENPELVKILLNSKVVDILRNN---G--KVSGVEYMD-ASGEKSKIIGDAVVLATG 203 (477)
T ss_pred HHHHHHHHHHHHhhhcChHHHhhhhcceeeeeecCC---C--eEEEEEEEc-CCCCccceecCceEEecC
Confidence 46777777776543 7899999999999655 6 899998874 234 3566888888766
No 238
>TIGR03452 mycothione_red mycothione reductase. Mycothiol, a glutathione analog in Mycobacterium tuberculosis and related species, can form a disulfide-linked dimer called mycothione. This enzyme can reduce mycothione to regenerate two mycothiol molecules. The enzyme shows some sequence similarity to glutathione-disulfide reductase, trypanothione-disulfide reductase, and dihydrolipoamide dehydrogenase. The characterized protein from M. tuberculosis, a homodimer, has FAD as a cofactor, one per monomer, and uses NADPH as a substrate.
Probab=84.80 E-value=3.8 Score=37.63 Aligned_cols=54 Identities=19% Similarity=0.131 Sum_probs=39.0
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+.+.+.+.+ +.|++++++++|+++..++ + . ..+.+. +|+.+++|.||.++...
T Consensus 211 ~~~~~l~~~~-~~gI~i~~~~~V~~i~~~~---~--~-v~v~~~---~g~~i~~D~vl~a~G~~ 264 (452)
T TIGR03452 211 DISDRFTEIA-KKKWDIRLGRNVTAVEQDG---D--G-VTLTLD---DGSTVTADVLLVATGRV 264 (452)
T ss_pred HHHHHHHHHH-hcCCEEEeCCEEEEEEEcC---C--e-EEEEEc---CCCEEEcCEEEEeeccC
Confidence 4555555544 5789999999999998765 3 2 234443 67789999999998753
No 239
>PF05834 Lycopene_cycl: Lycopene cyclase protein; InterPro: IPR008671 This family consists of lycopene beta and epsilon cyclase proteins. Carotenoids with cyclic end groups are essential components of the photosynthetic membranes in all plants, algae, and cyanobacteria. These lipid-soluble compounds protect against photo-oxidation, harvest light for photosynthesis, and dissipate excess light energy absorbed by the antenna pigments. The cyclisation of lycopene (psi, psi-carotene) is a key branch point in the pathway of carotenoid biosynthesis. Two types of cyclic end groups are found in higher plant carotenoids: the beta and epsilon rings. Carotenoids with two beta rings are ubiquitous, and those with one beta and one epsilon ring are common; however, carotenoids with two epsilon rings are rare [].; GO: 0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 0016117 carotenoid biosynthetic process
Probab=84.78 E-value=2.7 Score=37.54 Aligned_cols=55 Identities=15% Similarity=0.099 Sum_probs=43.1
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
..|-+.+.+.++ .++.++++++|++|..+++ + ..|++. +|+.+.|+.||-+.++.
T Consensus 87 ~~f~~~l~~~~~-~~~~~~~~~~V~~i~~~~~--~----~~v~~~---~g~~i~a~~VvDa~g~~ 141 (374)
T PF05834_consen 87 ADFYEFLLERAA-AGGVIRLNARVTSIEETGD--G----VLVVLA---DGRTIRARVVVDARGPS 141 (374)
T ss_pred HHHHHHHHHHhh-hCCeEEEccEEEEEEecCc--e----EEEEEC---CCCEEEeeEEEECCCcc
Confidence 357788888888 7778999999999998862 2 345553 88899999999997743
No 240
>PRK07236 hypothetical protein; Provisional
Probab=84.78 E-value=2.8 Score=37.31 Aligned_cols=50 Identities=26% Similarity=0.262 Sum_probs=36.6
Q ss_pred CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-Hhh-hCCC
Q 026885 61 GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKR-LLPS 119 (231)
Q Consensus 61 Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~-Ll~~ 119 (231)
+++|+++++|++|+.++ + .+ .|.+. +|+++.||.||.|-..+. +.+ +++.
T Consensus 112 ~~~i~~~~~v~~i~~~~---~--~v-~v~~~---~g~~~~ad~vIgADG~~S~vR~~l~~~ 163 (386)
T PRK07236 112 AERYHLGETLVGFEQDG---D--RV-TARFA---DGRRETADLLVGADGGRSTVRAQLLPD 163 (386)
T ss_pred CcEEEcCCEEEEEEecC---C--eE-EEEEC---CCCEEEeCEEEECCCCCchHHHHhCCC
Confidence 46899999999998876 3 33 35554 788999999999977654 444 4443
No 241
>TIGR03219 salicylate_mono salicylate 1-monooxygenase. Members of this protein family are salicylate 1-monooxygenase, also called salicylate hydroxylase. This enzyme converts salicylate to catechol, which is a common intermediate in the degradation of a number of aromatic compounds (phenol, toluene, benzoate, etc.). The gene for this protein may occur in catechol degradation genes, such as those of the meta-cleavage pathway.
Probab=84.69 E-value=2.5 Score=38.04 Aligned_cols=58 Identities=10% Similarity=0.135 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-HhhhC
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~Ll 117 (231)
|.+.|.+.+. ++.++++++|++|..+++ + +.|.+. +|++++||.||.|-..+. +.+.+
T Consensus 107 l~~~L~~~~~--~~~v~~~~~v~~i~~~~~--~----~~v~~~---~g~~~~ad~vVgADG~~S~vR~~l 165 (414)
T TIGR03219 107 FLDALLKHLP--EGIASFGKRATQIEEQAE--E----VQVLFT---DGTEYRCDLLIGADGIKSALRDYV 165 (414)
T ss_pred HHHHHHHhCC--CceEEcCCEEEEEEecCC--c----EEEEEc---CCCEEEeeEEEECCCccHHHHHHh
Confidence 4555555543 467899999999987652 2 345553 788899999999988765 44433
No 242
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=84.65 E-value=3.9 Score=38.34 Aligned_cols=62 Identities=16% Similarity=0.206 Sum_probs=43.4
Q ss_pred HHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCChhh-HhhhCC
Q 026885 50 SGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDVPG-IKRLLP 118 (231)
Q Consensus 50 ~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~~~-~~~Ll~ 118 (231)
-+.|.+.+++. |++|+++++|++|+.+++ + + .|++.. .+| ++++||.||-+-..+. +.+.+.
T Consensus 116 e~~L~~~~~~~~gv~v~~g~~v~~i~~~~~--~---v-~v~~~~-~~G~~~~i~ad~vVgADG~~S~vR~~lg 181 (538)
T PRK06183 116 EAVLRAGLARFPHVRVRFGHEVTALTQDDD--G---V-TVTLTD-ADGQRETVRARYVVGCDGANSFVRRTLG 181 (538)
T ss_pred HHHHHHHHHhCCCcEEEcCCEEEEEEEcCC--e---E-EEEEEc-CCCCEEEEEEEEEEecCCCchhHHHHcC
Confidence 34566666664 899999999999998762 3 3 344431 145 5789999999887764 556664
No 243
>PRK07846 mycothione reductase; Reviewed
Probab=84.64 E-value=3.5 Score=37.83 Aligned_cols=54 Identities=19% Similarity=0.133 Sum_probs=38.6
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+.+.+.+. .+.|++++++++|+++..++ + + ..+.+. +|+.+++|.||.++...
T Consensus 208 ~~~~~l~~l-~~~~v~i~~~~~v~~i~~~~---~--~-v~v~~~---~g~~i~~D~vl~a~G~~ 261 (451)
T PRK07846 208 DISERFTEL-ASKRWDVRLGRNVVGVSQDG---S--G-VTLRLD---DGSTVEADVLLVATGRV 261 (451)
T ss_pred HHHHHHHHH-HhcCeEEEeCCEEEEEEEcC---C--E-EEEEEC---CCcEeecCEEEEEECCc
Confidence 345555544 45789999999999998654 3 2 234443 67889999999998753
No 244
>PRK06617 2-octaprenyl-6-methoxyphenyl hydroxylase; Validated
Probab=84.42 E-value=3.6 Score=36.58 Aligned_cols=60 Identities=8% Similarity=0.062 Sum_probs=44.7
Q ss_pred hhHHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-HhhhC
Q 026885 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~Ll 117 (231)
.|.+.|.+.+++.+ ++++++++|++|+.+++ + + .|.+. ++ ++.||.||-|-..+. +.+.+
T Consensus 105 ~L~~~L~~~~~~~~~v~~~~~~~v~~i~~~~~--~---v-~v~~~---~~-~~~adlvIgADG~~S~vR~~l 166 (374)
T PRK06617 105 DFKKILLSKITNNPLITLIDNNQYQEVISHND--Y---S-IIKFD---DK-QIKCNLLIICDGANSKVRSHY 166 (374)
T ss_pred HHHHHHHHHHhcCCCcEEECCCeEEEEEEcCC--e---E-EEEEc---CC-EEeeCEEEEeCCCCchhHHhc
Confidence 46778888888876 89999999999988762 2 2 35552 44 899999999877764 55554
No 245
>KOG2844 consensus Dimethylglycine dehydrogenase precursor [Amino acid transport and metabolism]
Probab=84.41 E-value=2 Score=41.37 Aligned_cols=56 Identities=11% Similarity=0.093 Sum_probs=47.9
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
.+.+++++..++.|+.|.-|++|++|..+.+ +..||++. -| .+++..||-++.+++
T Consensus 188 ~lC~ala~~A~~~GA~viE~cpV~~i~~~~~-----~~~gVeT~---~G-~iet~~~VNaaGvWA 243 (856)
T KOG2844|consen 188 GLCQALARAASALGALVIENCPVTGLHVETD-----KFGGVETP---HG-SIETECVVNAAGVWA 243 (856)
T ss_pred HHHHHHHHHHHhcCcEEEecCCcceEEeecC-----Cccceecc---Cc-ceecceEEechhHHH
Confidence 6789999999999999999999999999873 45688873 44 578999999999864
No 246
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=84.15 E-value=3.8 Score=37.90 Aligned_cols=57 Identities=5% Similarity=-0.129 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHHCCcE--EEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGR--FHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~--i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
+.+.+-|.++.+..|.+ |++|++|++|...+ + -+.|.+.. .++. +..+|+||.|...
T Consensus 111 ~ev~~YL~~~a~~fgl~~~I~~~t~V~~V~~~~---~---~w~V~~~~-~~~~~~~~~~d~VIvAtG~ 171 (461)
T PLN02172 111 REVLAYLQDFAREFKIEEMVRFETEVVRVEPVD---G---KWRVQSKN-SGGFSKDEIFDAVVVCNGH 171 (461)
T ss_pred HHHHHHHHHHHHHcCCcceEEecCEEEEEeecC---C---eEEEEEEc-CCCceEEEEcCEEEEeccC
Confidence 35788888999999988 99999999998865 3 24555542 1222 4569999988774
No 247
>PRK09754 phenylpropionate dioxygenase ferredoxin reductase subunit; Provisional
Probab=84.08 E-value=2.8 Score=37.66 Aligned_cols=46 Identities=11% Similarity=0.132 Sum_probs=36.8
Q ss_pred HHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
+++++.|++++++++|+.|..++ . .|.+. +|+.+.+|++|.|+...
T Consensus 66 ~~~~~~~i~~~~g~~V~~id~~~---~-----~v~~~---~g~~~~yd~LViATGs~ 111 (396)
T PRK09754 66 NWWQENNVHLHSGVTIKTLGRDT---R-----ELVLT---NGESWHWDQLFIATGAA 111 (396)
T ss_pred HHHHHCCCEEEcCCEEEEEECCC---C-----EEEEC---CCCEEEcCEEEEccCCC
Confidence 45678999999999999998875 2 35553 78889999999998753
No 248
>PRK09564 coenzyme A disulfide reductase; Reviewed
Probab=83.89 E-value=2.6 Score=38.29 Aligned_cols=54 Identities=6% Similarity=0.024 Sum_probs=38.4
Q ss_pred HHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEe--cCEEEEcCChh
Q 026885 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQ--ADAYVAACDVP 111 (231)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~--aD~vV~a~p~~ 111 (231)
.....+.+++.|++++++++|++|..++ + .|.+....+|+.++ +|++|.|+...
T Consensus 59 ~~~~~~~~~~~gv~~~~~~~V~~id~~~---~-----~v~~~~~~~~~~~~~~yd~lviAtG~~ 114 (444)
T PRK09564 59 IARTPEEFIKSGIDVKTEHEVVKVDAKN---K-----TITVKNLKTGSIFNDTYDKLMIATGAR 114 (444)
T ss_pred hcCCHHHHHHCCCeEEecCEEEEEECCC---C-----EEEEEECCCCCEEEecCCEEEECCCCC
Confidence 3344567888999999999999998875 2 24443212356666 99999988753
No 249
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=83.64 E-value=4.9 Score=40.34 Aligned_cols=60 Identities=15% Similarity=0.101 Sum_probs=43.3
Q ss_pred cchhHHHHHHHHHHC----CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 46 DVYLSGPIRKYITDK----GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~----Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
+..+.+.|.+.++++ ++++..++.+.+|..++ | ++.|+...+..+|+ .+.|+.||+|+.-
T Consensus 138 G~~i~~~L~~~l~~~~~~~~i~~~~~~~~~~Li~~~---g--~v~Gv~~~~~~~g~~~~i~AkaVILATGG 203 (897)
T PRK13800 138 GKDVKKALYRVLRQRSMRERIRIENRLMPVRVLTEG---G--RAVGAAALNTRTGEFVTVGAKAVILATGP 203 (897)
T ss_pred chhHHHHHHHHHHHhhhcCCcEEEeceeeEEEEeeC---C--EEEEEEEEecCCCcEEEEECCEEEECCCc
Confidence 345677788887765 56777777778888765 6 89998764323555 4779999999773
No 250
>TIGR03385 CoA_CoA_reduc CoA-disulfide reductase. Members of this protein family are CoA-disulfide reductase (EC 1.8.1.14), as characterized in Staphylococcus aureus, Pyrococcus horikoshii, and Borrelia burgdorferi, and inferred in several other species on the basis of high levels of CoA and an absence of glutathione as a protective thiol.
Probab=83.02 E-value=4.5 Score=36.60 Aligned_cols=49 Identities=8% Similarity=0.142 Sum_probs=35.4
Q ss_pred HHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEe--cCEEEEcCCh
Q 026885 54 RKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQ--ADAYVAACDV 110 (231)
Q Consensus 54 ~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~--aD~vV~a~p~ 110 (231)
.+++++.|++++++++|++|..++ + .|.+....+++.+. +|++|.|+..
T Consensus 51 ~~~~~~~gv~~~~~~~V~~id~~~---~-----~v~~~~~~~~~~~~~~yd~lIiATG~ 101 (427)
T TIGR03385 51 EVFIKKRGIDVKTNHEVIEVNDER---Q-----TVVVRNNKTNETYEESYDYLILSPGA 101 (427)
T ss_pred HHHHHhcCCeEEecCEEEEEECCC---C-----EEEEEECCCCCEEecCCCEEEECCCC
Confidence 345588999999999999998765 3 24443222355677 9999998875
No 251
>PRK07538 hypothetical protein; Provisional
Probab=83.00 E-value=5.7 Score=35.76 Aligned_cols=63 Identities=14% Similarity=0.143 Sum_probs=41.1
Q ss_pred hHHHHHHHHHH-CCc-EEEcCceeeEEEeccCCCCcceEEEEEEEe--cCCCeEEecCEEEEcCChhh-HhhhC
Q 026885 49 LSGPIRKYITD-KGG-RFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVPG-IKRLL 117 (231)
Q Consensus 49 l~~~l~~~l~~-~Gg-~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~--~~~g~~~~aD~vV~a~p~~~-~~~Ll 117 (231)
|.+.|.+.+.+ .|. +|+++++|++++.+++ + .+ +.+.. .+++++++||.||.|-..+. +.+.+
T Consensus 104 l~~~L~~~~~~~~g~~~i~~~~~v~~~~~~~~--~--~~--~~~~~~~~g~~~~~~adlvIgADG~~S~vR~~l 171 (413)
T PRK07538 104 LQMLLLDAVRERLGPDAVRTGHRVVGFEQDAD--V--TV--VFLGDRAGGDLVSVRGDVLIGADGIHSAVRAQL 171 (413)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--c--eE--EEEeccCCCccceEEeeEEEECCCCCHHHhhhh
Confidence 45566666655 474 6999999999987762 3 22 22322 12235889999999988764 55544
No 252
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=82.78 E-value=4.8 Score=39.54 Aligned_cols=53 Identities=23% Similarity=0.265 Sum_probs=39.2
Q ss_pred HHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe------c-----------CCCeEEecCEEEEcCChh
Q 026885 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------A-----------TDKKVVQADAYVAACDVP 111 (231)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~------~-----------~~g~~~~aD~vV~a~p~~ 111 (231)
+.+++.|++|++++.+.+|..+++ | ++++|++.. . ++..++++|.||.|+...
T Consensus 616 ~~~~~~GV~i~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~~G~~~~~~~~g~~~~i~~D~Vi~A~G~~ 685 (752)
T PRK12778 616 KHAKEEGIEFLTLHNPIEYLADEK--G--WVKQVVLQKMELGEPDASGRRRPVAIPGSTFTVDVDLVIVSVGVS 685 (752)
T ss_pred HHHHHcCCEEEecCcceEEEECCC--C--EEEEEEEEEEEecCcCCCCCCCceecCCCeEEEECCEEEECcCCC
Confidence 457889999999999999986552 5 788887631 0 112368999999998753
No 253
>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional
Probab=82.51 E-value=4.9 Score=40.92 Aligned_cols=53 Identities=19% Similarity=0.258 Sum_probs=39.8
Q ss_pred HHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe------cC--------CC--eEEecCEEEEcCCh
Q 026885 54 RKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------AT--------DK--KVVQADAYVAACDV 110 (231)
Q Consensus 54 ~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~------~~--------~g--~~~~aD~vV~a~p~ 110 (231)
.+.+++.|++|++++.+.+|..+++ | ++++|.+.. +. +| .++++|.||.++..
T Consensus 616 ~~~a~eeGI~~~~~~~p~~i~~~~~--G--~v~~v~~~~~~l~~~d~~Gr~~~~~~g~~~~i~~D~Vi~AiG~ 684 (1006)
T PRK12775 616 IRHAKEEGIDFFFLHSPVEIYVDAE--G--SVRGMKVEEMELGEPDEKGRRKPMPTGEFKDLECDTVIYALGT 684 (1006)
T ss_pred HHHHHhCCCEEEecCCcEEEEeCCC--C--eEEEEEEEEEEecccCCCCCccccCCCceEEEEcCEEEECCCc
Confidence 3567889999999999999987553 6 888887641 01 12 36899999999875
No 254
>PRK13984 putative oxidoreductase; Provisional
Probab=82.12 E-value=4.8 Score=38.37 Aligned_cols=50 Identities=28% Similarity=0.413 Sum_probs=36.7
Q ss_pred HHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe-----c-----------CCCeEEecCEEEEcCChh
Q 026885 57 ITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-----A-----------TDKKVVQADAYVAACDVP 111 (231)
Q Consensus 57 l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~-----~-----------~~g~~~~aD~vV~a~p~~ 111 (231)
+.+.|++|++++.+.+|..++ | ++++|++.. . ++++++++|.||.++...
T Consensus 472 ~~~~GV~i~~~~~~~~i~~~~---g--~v~~v~~~~~~~~~~~~G~~~~~~~~g~~~~i~aD~Vi~aiG~~ 537 (604)
T PRK13984 472 GLEEGVVIYPGWGPMEVVIEN---D--KVKGVKFKKCVEVFDEEGRFNPKFDESDQIIVEADMVVEAIGQA 537 (604)
T ss_pred HHHcCCEEEeCCCCEEEEccC---C--EEEEEEEEEEeeccCCCCCccceecCCceEEEECCEEEEeeCCC
Confidence 346899999999999987654 5 788876641 0 123478999999997753
No 255
>TIGR03169 Nterm_to_SelD pyridine nucleotide-disulfide oxidoreductase family protein. Members of this protein family include N-terminal sequence regions of (probable) bifunctional proteins whose C-terminal sequences are SelD, or selenide,water dikinase, the selenium donor protein necessary for selenium incorporation into protein (as selenocysteine), tRNA (as 2-selenouridine), or both. However, some members of this family occur in species that do not show selenium incorporation, and the function of this protein family is unknown.
Probab=81.85 E-value=2.1 Score=37.75 Aligned_cols=50 Identities=14% Similarity=0.239 Sum_probs=39.1
Q ss_pred hHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
+..++.+.+++.|++++.+ +|++|..++ . .|.+. +|+++.+|++|.|+..
T Consensus 56 ~~~~~~~~~~~~gv~~~~~-~v~~id~~~---~-----~V~~~---~g~~~~yD~LviAtG~ 105 (364)
T TIGR03169 56 IRIDLRRLARQAGARFVIA-EATGIDPDR---R-----KVLLA---NRPPLSYDVLSLDVGS 105 (364)
T ss_pred hcccHHHHHHhcCCEEEEE-EEEEEeccc---C-----EEEEC---CCCcccccEEEEccCC
Confidence 4556778888899999875 899998875 2 35563 7878999999998774
No 256
>PRK06753 hypothetical protein; Provisional
Probab=81.62 E-value=4.7 Score=35.50 Aligned_cols=58 Identities=12% Similarity=0.165 Sum_probs=40.3
Q ss_pred hHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-HhhhC
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~Ll 117 (231)
|.+.|.+.++ +.+|+++++|++|+.++ + + ..|.+. +|+++.+|.||.|-..+. +.+.+
T Consensus 100 l~~~L~~~~~--~~~i~~~~~v~~i~~~~---~--~-v~v~~~---~g~~~~~~~vigadG~~S~vR~~~ 158 (373)
T PRK06753 100 LIDIIKSYVK--EDAIFTGKEVTKIENET---D--K-VTIHFA---DGESEAFDLCIGADGIHSKVRQSV 158 (373)
T ss_pred HHHHHHHhCC--CceEEECCEEEEEEecC---C--c-EEEEEC---CCCEEecCEEEECCCcchHHHHHh
Confidence 3444444443 46899999999998665 3 2 345553 788899999999988764 55544
No 257
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=81.09 E-value=3.2 Score=32.86 Aligned_cols=55 Identities=15% Similarity=0.147 Sum_probs=40.1
Q ss_pred HHHHHHHHCCcEEEcCceeeEEEeccCCCCcceE----EEEEEEecCCCeEEecCEEEEcCChh
Q 026885 52 PIRKYITDKGGRFHLRWGCREILYDKAANAETYV----KGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v----~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+.+.+...+++++++++|.+|.... + ++ ..+.....+++..+.+|++|.|+...
T Consensus 63 ~~~~~~~~~~v~~~~~~~v~~i~~~~---~--~~~~~~~~~~~~~~~~~~~~~~d~lviAtG~~ 121 (201)
T PF07992_consen 63 KLVDQLKNRGVEIRLNAKVVSIDPES---K--RVVCPAVTIQVVETGDGREIKYDYLVIATGSR 121 (201)
T ss_dssp HHHHHHHHHTHEEEHHHTEEEEEEST---T--EEEETCEEEEEEETTTEEEEEEEEEEEESTEE
T ss_pred ccccccccceEEEeeccccccccccc---c--ccccCcccceeeccCCceEecCCeeeecCccc
Confidence 56666688999999999999998876 3 32 12222223467789999999998854
No 258
>PRK06292 dihydrolipoamide dehydrogenase; Validated
Probab=80.65 E-value=6.6 Score=35.87 Aligned_cols=56 Identities=13% Similarity=0.090 Sum_probs=40.6
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEE-ecCCCeEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS-KATDKKVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~-~~~~g~~~~aD~vV~a~p~ 110 (231)
..+.+.+.+.++++ ++|+++++|++|..++ + .++.+. ..++++++++|.||.++..
T Consensus 210 ~~~~~~~~~~l~~~-I~i~~~~~v~~i~~~~---~----~~v~~~~~~~~~~~i~~D~vi~a~G~ 266 (460)
T PRK06292 210 PEVSKQAQKILSKE-FKIKLGAKVTSVEKSG---D----EKVEELEKGGKTETIEADYVLVATGR 266 (460)
T ss_pred HHHHHHHHHHHhhc-cEEEcCCEEEEEEEcC---C----ceEEEEEcCCceEEEEeCEEEEccCC
Confidence 35677888899999 9999999999997654 1 123321 1124467899999998765
No 259
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=80.35 E-value=7.8 Score=35.76 Aligned_cols=58 Identities=12% Similarity=-0.025 Sum_probs=41.8
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEec-CCCeEEecCEEEEcCChh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA-TDKKVVQADAYVAACDVP 111 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~-~~g~~~~aD~vV~a~p~~ 111 (231)
..+.+.+.+.++++ ++|+++++|++|+.++ + . ..+.+... +.++++++|.||.++...
T Consensus 215 ~~~~~~~~~~l~~~-v~i~~~~~v~~i~~~~---~--~-~~v~~~~~~~~~~~i~~D~vi~a~G~~ 273 (471)
T PRK06467 215 KDIVKVFTKRIKKQ-FNIMLETKVTAVEAKE---D--G-IYVTMEGKKAPAEPQRYDAVLVAVGRV 273 (471)
T ss_pred HHHHHHHHHHHhhc-eEEEcCCEEEEEEEcC---C--E-EEEEEEeCCCcceEEEeCEEEEeeccc
Confidence 35677888889888 9999999999998765 2 2 23444311 113568999999998853
No 260
>COG4716 Myosin-crossreactive antigen [Function unknown]
Probab=80.29 E-value=3.6 Score=37.17 Aligned_cols=69 Identities=17% Similarity=0.078 Sum_probs=43.8
Q ss_pred CCCCCCcccHHHHHHHHHHHHhccccc--eeeeeCCCCc--chhHHHHHHHHHHCCcEEEcCceeeEEEeccC
Q 026885 10 GFIDCDNISARCMLTIFALFATKTEAS--LLRMLKGSPD--VYLSGPIRKYITDKGGRFHLRWGCREILYDKA 78 (231)
Q Consensus 10 ~~~~~~~~Sa~~~~~~l~~~~~~~~~~--~~g~~~g~~~--~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~ 78 (231)
+|.--.=-||--|...+-+|..+-.+- .-++..-++. +.++.||..+|+++||.+.+++.|+.|.++..
T Consensus 186 mFAFekWhSa~EmRRY~mRfihhi~gl~dfs~lkftkyNQYeSlvlPli~yL~~H~Vdf~~~~~Vedi~v~~t 258 (587)
T COG4716 186 MFAFEKWHSAFEMRRYMMRFIHHISGLPDFSALKFTKYNQYESLVLPLITYLKSHGVDFTYDQKVEDIDVDDT 258 (587)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHhcCCCcchhhcccccchHHHHHHHHHHHHHHcCCceEeccEEeeeeeccC
Confidence 333334445555554444444333222 1122222333 48899999999999999999999999999863
No 261
>PRK14989 nitrite reductase subunit NirD; Provisional
Probab=78.91 E-value=3.3 Score=41.32 Aligned_cols=48 Identities=13% Similarity=0.016 Sum_probs=37.7
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
..+++++.|++++++++|++|..+. + -|.+. +|+.+.+|.+|.|+...
T Consensus 65 ~~~~~~~~gI~~~~g~~V~~Id~~~------~--~V~~~---~G~~i~yD~LVIATGs~ 112 (847)
T PRK14989 65 REGFYEKHGIKVLVGERAITINRQE------K--VIHSS---AGRTVFYDKLIMATGSY 112 (847)
T ss_pred CHHHHHhCCCEEEcCCEEEEEeCCC------c--EEEEC---CCcEEECCEEEECCCCC
Confidence 4567788999999999999998764 2 24443 78889999999998753
No 262
>COG1635 THI4 Ribulose 1,5-bisphosphate synthetase, converts PRPP to RuBP, flavoprotein [Carbohydrate transport and metabolism]
Probab=78.43 E-value=12 Score=31.42 Aligned_cols=61 Identities=15% Similarity=0.205 Sum_probs=47.0
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe---c-----CCCeEEecCEEEEcCChhh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK---A-----TDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~---~-----~~g~~~~aD~vV~a~p~~~ 112 (231)
.+...|+....+.|++|..++.|+.+.+.++ . |+.||.++= . -|--+++|++||.++.+..
T Consensus 110 e~~skl~~~a~~aGaki~n~~~veDvi~r~~--~--rVaGvVvNWt~V~~~~lhvDPl~i~a~~VvDaTGHda 178 (262)
T COG1635 110 EFASKLAARALDAGAKIFNGVSVEDVIVRDD--P--RVAGVVVNWTPVQMAGLHVDPLTIRAKAVVDATGHDA 178 (262)
T ss_pred HHHHHHHHHHHhcCceeeecceEEEEEEecC--C--ceEEEEEecchhhhcccccCcceeeEEEEEeCCCCch
Confidence 4566777777889999999999999999983 3 699987751 1 1334678999999988753
No 263
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=78.13 E-value=10 Score=35.87 Aligned_cols=52 Identities=19% Similarity=0.139 Sum_probs=35.6
Q ss_pred HHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe---------------cCCCeEEecCEEEEcCChh
Q 026885 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK---------------ATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~---------------~~~g~~~~aD~vV~a~p~~ 111 (231)
+..++.|++|++++.+.+|..+++ + ++ ++++.. .++..++++|.||.++...
T Consensus 313 ~~a~~~GVki~~~~~~~~i~~~~~--~--~~-~v~~~~~~~~~~~~~g~~~~~~g~~~~i~~D~Vi~A~G~~ 379 (564)
T PRK12771 313 EEALREGVEINWLRTPVEIEGDEN--G--AT-GLRVITVEKMELDEDGRPSPVTGEEETLEADLVVLAIGQD 379 (564)
T ss_pred HHHHHcCCEEEecCCcEEEEcCCC--C--EE-EEEEEEEEecccCCCCCeeecCCceEEEECCEEEECcCCC
Confidence 334678999999999999987652 3 33 654321 0112478899999998853
No 264
>PTZ00153 lipoamide dehydrogenase; Provisional
Probab=77.48 E-value=10 Score=36.73 Aligned_cols=60 Identities=17% Similarity=0.051 Sum_probs=39.1
Q ss_pred hhHHHHHHHH-HHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEec--C--CC--------eEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYI-TDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--T--DK--------KVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l-~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~--~--~g--------~~~~aD~vV~a~p~~ 111 (231)
.+.+.+.+.+ +++|++|+++++|++|..+++ + +...+.+... + ++ +++++|.||.++...
T Consensus 354 eis~~l~~~ll~~~GV~I~~~~~V~~I~~~~~--~--~~v~v~~~~~~~~~~~~~~~~~~~~~~i~aD~VlvAtGr~ 426 (659)
T PTZ00153 354 DVAKYFERVFLKSKPVRVHLNTLIEYVRAGKG--N--QPVIIGHSERQTGESDGPKKNMNDIKETYVDSCLVATGRK 426 (659)
T ss_pred HHHHHHHHHHhhcCCcEEEcCCEEEEEEecCC--c--eEEEEEEeccccccccccccccccceEEEcCEEEEEECcc
Confidence 4566666654 679999999999999986541 2 2222333210 1 11 368999999998753
No 265
>PRK11445 putative oxidoreductase; Provisional
Probab=77.27 E-value=12 Score=32.95 Aligned_cols=60 Identities=15% Similarity=0.121 Sum_probs=39.9
Q ss_pred hHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCChhh-HhhhC
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG-IKRLL 117 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~~~-~~~Ll 117 (231)
+-+.|.+. .+.|++++++++|+.++.+++ + ..|.+. .+|+ +++||.||.|..... +.+.+
T Consensus 101 ~~~~L~~~-~~~gv~v~~~~~v~~i~~~~~--~----~~v~~~--~~g~~~~i~a~~vV~AdG~~S~vr~~l 163 (351)
T PRK11445 101 FDLWLKSL-IPASVEVYHNSLCRKIWREDD--G----YHVIFR--ADGWEQHITARYLVGADGANSMVRRHL 163 (351)
T ss_pred HHHHHHHH-HhcCCEEEcCCEEEEEEEcCC--E----EEEEEe--cCCcEEEEEeCEEEECCCCCcHHhHHh
Confidence 33444443 467899999999999987762 2 334432 2453 688999999887753 44443
No 266
>KOG1346 consensus Programmed cell death 8 (apoptosis-inducing factor) [Signal transduction mechanisms]
Probab=77.18 E-value=2.7 Score=38.46 Aligned_cols=55 Identities=20% Similarity=0.059 Sum_probs=42.6
Q ss_pred chhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 47 VYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
+.|.+--.+.+++.|+.++-|+.|+.+.... + + .-+.++ ||.++..|.||.++..
T Consensus 393 eyls~wt~ekir~~GV~V~pna~v~sv~~~~---~--n-l~lkL~---dG~~l~tD~vVvavG~ 447 (659)
T KOG1346|consen 393 EYLSQWTIEKIRKGGVDVRPNAKVESVRKCC---K--N-LVLKLS---DGSELRTDLVVVAVGE 447 (659)
T ss_pred HHHHHHHHHHHHhcCceeccchhhhhhhhhc---c--c-eEEEec---CCCeeeeeeEEEEecC
Confidence 4455556678899999999999999998876 2 1 234454 8999999999999774
No 267
>PF01946 Thi4: Thi4 family; PDB: 1RP0_A 3FPZ_B 3JSK_K.
Probab=76.37 E-value=14 Score=30.91 Aligned_cols=60 Identities=12% Similarity=0.215 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe---c-----CCCeEEecCEEEEcCChhh
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK---A-----TDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~---~-----~~g~~~~aD~vV~a~p~~~ 112 (231)
+...|.....+.|++|+-.+.|+.+.+.++ + |+.||+++- . -|--+++|..||.++.+..
T Consensus 98 ~~s~L~s~a~~aGakifn~~~vEDvi~r~~--~--rV~GvViNWt~V~~~glHvDPl~i~ak~ViDaTGHda 165 (230)
T PF01946_consen 98 FTSTLASKAIDAGAKIFNLTSVEDVIVRED--D--RVAGVVINWTPVEMAGLHVDPLTIRAKVVIDATGHDA 165 (230)
T ss_dssp HHHHHHHHHHTTTEEEEETEEEEEEEEECS--C--EEEEEEEEEHHHHTT--T-B-EEEEESEEEE---SSS
T ss_pred HHHHHHHHHhcCCCEEEeeeeeeeeEEEcC--C--eEEEEEEEehHHhHhhcCCCcceEEEeEEEeCCCCch
Confidence 455556555669999999999999999883 5 899998762 1 1334788999999987653
No 268
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=76.08 E-value=9.5 Score=33.32 Aligned_cols=64 Identities=9% Similarity=-0.043 Sum_probs=48.0
Q ss_pred eeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
+|++.+-+...+.+.+.+..+.-|.++.. ..|.++...+ ....|.+ .+|+ ++|+.||.|+....
T Consensus 52 pg~~~~~~g~~L~~~~~~~a~~~~~~~~~-~~v~~v~~~~------~~F~v~t---~~~~-~~ak~vIiAtG~~~ 115 (305)
T COG0492 52 PGFPGGILGPELMEQMKEQAEKFGVEIVE-DEVEKVELEG------GPFKVKT---DKGT-YEAKAVIIATGAGA 115 (305)
T ss_pred CCCccCCchHHHHHHHHHHHhhcCeEEEE-EEEEEEeecC------ceEEEEE---CCCe-EEEeEEEECcCCcc
Confidence 56666556667899999999999999888 7788887664 1345555 2555 99999999988643
No 269
>TIGR02360 pbenz_hydroxyl 4-hydroxybenzoate 3-monooxygenase. Members of this family are the enzyme 4-hydroxybenzoate 3-monooxygenase, also called p-hydroxybenzoate hydroxylase. It converts 4-hydroxybenzoate + NADPH + molecular oxygen to protocatechuate + NADPH + water. It contains monooxygenase (pfam01360) and FAD binding (pfam01494) domains. Pathways that contain this enzyme include the protocatechuate 4,5-degradation pathway.
Probab=75.46 E-value=11 Score=33.83 Aligned_cols=65 Identities=8% Similarity=-0.011 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCChhh-HhhhCCC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG-IKRLLPS 119 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~~~-~~~Ll~~ 119 (231)
.+...|.+.+.+.|++++++++++++...++ . ..+|.+. .+|+ +++||.||-|-..+. +.+.++.
T Consensus 104 ~l~~~L~~~~~~~g~~~~~~~~~v~~~~~~~--~---~~~V~~~--~~g~~~~i~adlvIGADG~~S~VR~~l~~ 171 (390)
T TIGR02360 104 EVTRDLMEAREAAGLTTVYDADDVRLHDLAG--D---RPYVTFE--RDGERHRLDCDFIAGCDGFHGVSRASIPA 171 (390)
T ss_pred HHHHHHHHHHHhcCCeEEEeeeeEEEEecCC--C---ccEEEEE--ECCeEEEEEeCEEEECCCCchhhHHhcCc
Confidence 3456677888888999999999988865321 1 2356653 1554 688999998877764 6666654
No 270
>COG3573 Predicted oxidoreductase [General function prediction only]
Probab=74.93 E-value=5.4 Score=35.61 Aligned_cols=37 Identities=16% Similarity=0.302 Sum_probs=30.7
Q ss_pred hhHHHHHHHHHH---CC-cEEEcCceeeEEEeccCCCCcceEEEEE
Q 026885 48 YLSGPIRKYITD---KG-GRFHLRWGCREILYDKAANAETYVKGLA 89 (231)
Q Consensus 48 ~l~~~l~~~l~~---~G-g~i~~~~~V~~i~~~~~~~~~~~v~~v~ 89 (231)
.+.++.++.+++ +| +++++.++|.+|.+.+ | +|+||.
T Consensus 150 gvl~pFvr~~re~~~~~~v~f~~RHrV~~l~~t~---g--rvtGv~ 190 (552)
T COG3573 150 GVLEPFVRRLREAQRRGRVTFRFRHRVDGLTTTG---G--RVTGVR 190 (552)
T ss_pred chhhHHHHHHHHHHhCCceEEEeeeeccceEeeC---C--eEeeec
Confidence 457888888877 55 8999999999999998 6 888874
No 271
>KOG0042 consensus Glycerol-3-phosphate dehydrogenase [Energy production and conversion]
Probab=74.76 E-value=21 Score=33.83 Aligned_cols=97 Identities=16% Similarity=0.174 Sum_probs=63.7
Q ss_pred eeeeeCCCCcc-hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeE--EecCEEEEcCCh--h
Q 026885 37 LLRMLKGSPDV-YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV--VQADAYVAACDV--P 111 (231)
Q Consensus 37 ~~g~~~g~~~~-~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~--~~aD~vV~a~p~--~ 111 (231)
.+-|..|...+ .+--.++=-.-++|..+.--.+|.++..+++ | ++.|++..+.-.|++ +.|..||-|+.+ .
T Consensus 213 a~VYyDGQ~nDaRmnl~vAlTA~r~GA~v~Nh~ev~~Llkd~~--~--kv~Ga~~rD~iTG~e~~I~Ak~VVNATGpfsD 288 (680)
T KOG0042|consen 213 AMVYYDGQHNDARMNLAVALTAARNGATVLNHVEVVSLLKDKD--G--KVIGARARDHITGKEYEIRAKVVVNATGPFSD 288 (680)
T ss_pred EEEEecCCCchHHHHHHHHHHHHhcchhhhhHHHHHHHhhCCC--C--ceeeeEEEEeecCcEEEEEEEEEEeCCCCccH
Confidence 46677776554 3444444445568999999999999999985 7 888888764334554 458888888665 3
Q ss_pred hHhhhCCCcccCchHHHHhhCCCCCcEEEEEEEecC
Q 026885 112 GIKRLLPSSWREMKFFNNIYALVGVPVVTVQLRYNG 147 (231)
Q Consensus 112 ~~~~Ll~~~~~~~~~~~~~~~l~~~~i~~v~L~~d~ 147 (231)
.+.++-.+..++. -.|...||+.+.+
T Consensus 289 sIr~Mdd~~~~~i----------~~pSsGvHIVlP~ 314 (680)
T KOG0042|consen 289 SIRKMDDEDAKPI----------CVPSSGVHIVLPG 314 (680)
T ss_pred HHHhhcccccCce----------eccCCceeEEccc
Confidence 5666554422211 1366678887776
No 272
>TIGR02023 BchP-ChlP geranylgeranyl reductase. This model represents a group of geranylgeranyl reductases specific for the biosyntheses of bacteriochlorophyll and chlorophyll. It is unclear whether the processes of isoprenoid ligation to the chlorin ring and reduction of the geranylgeranyl chain to a phytyl chain are necessarily ordered the same way in all species (see introduction to ).
Probab=74.60 E-value=13 Score=33.12 Aligned_cols=63 Identities=16% Similarity=0.146 Sum_probs=42.4
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEec-----CCCeEEecCEEEEcCChh-hHhhhC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA-----TDKKVVQADAYVAACDVP-GIKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~-----~~g~~~~aD~vV~a~p~~-~~~~Ll 117 (231)
.|-+.|.+...+.|++++.+ .|+++..++ + . ..|.+..+ +...++.||.||-|-..+ .+.+.+
T Consensus 93 ~fd~~L~~~a~~~G~~v~~~-~v~~v~~~~---~--~-~~v~~~~~~~~~~~~~~~i~a~~VI~AdG~~S~v~r~l 161 (388)
T TIGR02023 93 VFDSYLRERAQKAGAELIHG-LFLKLERDR---D--G-VTLTYRTPKKGAGGEKGSVEADVVIGADGANSPVAKEL 161 (388)
T ss_pred HHHHHHHHHHHhCCCEEEee-EEEEEEEcC---C--e-EEEEEEeccccCCCcceEEEeCEEEECCCCCcHHHHHc
Confidence 45567888888899999765 699998776 3 2 34554321 112478999999998765 355544
No 273
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=71.02 E-value=9.3 Score=33.84 Aligned_cols=44 Identities=14% Similarity=0.083 Sum_probs=28.6
Q ss_pred cEEEcCceeeEEEeccCCCCcceEEEEEEEe--cCCCeEEecCEEEEcCCh
Q 026885 62 GRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDV 110 (231)
Q Consensus 62 g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~--~~~g~~~~aD~vV~a~p~ 110 (231)
.+|+.+++|+.++..++ | + ..+.+.. .+..+.+++|.||+|+.+
T Consensus 294 ~~l~~~~~v~~~~~~~~--~--~-~~l~~~~~~~~~~~~~~~D~VilATGy 339 (341)
T PF13434_consen 294 LRLLPNTEVTSAEQDGD--G--G-VRLTLRHRQTGEEETLEVDAVILATGY 339 (341)
T ss_dssp SEEETTEEEEEEEEES---S--S-EEEEEEETTT--EEEEEESEEEE---E
T ss_pred eEEeCCCEEEEEEECCC--C--E-EEEEEEECCCCCeEEEecCEEEEcCCc
Confidence 68999999999999873 3 2 3455553 223456789999999865
No 274
>KOG1336 consensus Monodehydroascorbate/ferredoxin reductase [General function prediction only]
Probab=70.16 E-value=8.4 Score=35.59 Aligned_cols=51 Identities=12% Similarity=0.137 Sum_probs=42.1
Q ss_pred hHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
+...--++.++.|.+++++++|+++.+.. . .+.+ ++|+++..|..|.|+..
T Consensus 129 ~a~r~~e~Yke~gIe~~~~t~v~~~D~~~---K-----~l~~---~~Ge~~kys~LilATGs 179 (478)
T KOG1336|consen 129 LAKRTPEFYKEKGIELILGTSVVKADLAS---K-----TLVL---GNGETLKYSKLIIATGS 179 (478)
T ss_pred ccccChhhHhhcCceEEEcceeEEeeccc---c-----EEEe---CCCceeecceEEEeecC
Confidence 44455568899999999999999999986 3 4666 49999999999988776
No 275
>KOG0405 consensus Pyridine nucleotide-disulphide oxidoreductase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=69.37 E-value=12 Score=33.58 Aligned_cols=64 Identities=13% Similarity=0.154 Sum_probs=46.8
Q ss_pred CCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh-hhHhh
Q 026885 44 SPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV-PGIKR 115 (231)
Q Consensus 44 ~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~-~~~~~ 115 (231)
++.+.+.+-+.+.++.+|+++|.++.++++....+ | -...+ . ..|....+|.++.|+.- +..+.
T Consensus 227 ~FD~~i~~~v~~~~~~~ginvh~~s~~~~v~K~~~--g--~~~~i-~---~~~~i~~vd~llwAiGR~Pntk~ 291 (478)
T KOG0405|consen 227 GFDEMISDLVTEHLEGRGINVHKNSSVTKVIKTDD--G--LELVI-T---SHGTIEDVDTLLWAIGRKPNTKG 291 (478)
T ss_pred chhHHHHHHHHHHhhhcceeecccccceeeeecCC--C--ceEEE-E---eccccccccEEEEEecCCCCccc
Confidence 45567788889999999999999999999998774 4 22222 2 26666668999998773 34443
No 276
>COG2303 BetA Choline dehydrogenase and related flavoproteins [Amino acid transport and metabolism]
Probab=68.92 E-value=11 Score=35.72 Aligned_cols=49 Identities=16% Similarity=0.141 Sum_probs=35.4
Q ss_pred HHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--e-EEecCEEEEcCCh
Q 026885 57 ITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--K-VVQADAYVAACDV 110 (231)
Q Consensus 57 l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~-~~~aD~vV~a~p~ 110 (231)
.+.-+.+|++++.|++|.+++ + |+++|.+.....+ + .+.++.||+++..
T Consensus 213 ~~~~nl~v~t~a~v~ri~~~~---~--r~~gv~~~~~~~~~~~~~~a~~~viL~AGa 264 (542)
T COG2303 213 LKRPNLTLLTGARVRRILLEG---D--RAVGVEVEIGDGGTIETAVAAREVVLAAGA 264 (542)
T ss_pred hcCCceEEecCCEEEEEEEEC---C--eeEEEEEEeCCCCceEEEecCceEEEeccc
Confidence 444458999999999999998 5 7888887642222 2 2457888877664
No 277
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=67.77 E-value=23 Score=35.90 Aligned_cols=51 Identities=16% Similarity=0.160 Sum_probs=35.7
Q ss_pred HHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe------cC--------CC--eEEecCEEEEcCCh
Q 026885 57 ITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK------AT--------DK--KVVQADAYVAACDV 110 (231)
Q Consensus 57 l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~------~~--------~g--~~~~aD~vV~a~p~ 110 (231)
..+.|+++++++.+++|..+++ ++ +++++.+.. +. +| .+++||.||.|+..
T Consensus 494 a~eeGV~~~~~~~p~~i~~d~~-~~--~V~~v~~~~~~l~~~d~~Gr~~~~~~G~e~~i~aD~VI~AiG~ 560 (944)
T PRK12779 494 ALEEGINLAVLRAPREFIGDDH-TH--FVTHALLDVNELGEPDKSGRRSPKPTGEIERVPVDLVIMALGN 560 (944)
T ss_pred HHHCCCEEEeCcceEEEEecCC-CC--EEEEEEEEEEEeccccCcCceeeecCCceEEEECCEEEEcCCc
Confidence 4578999999999999987632 13 677765421 01 12 46899999999885
No 278
>COG5044 MRS6 RAB proteins geranylgeranyltransferase component A (RAB escort protein) [Posttranslational modification, protein turnover, chaperones]
Probab=67.72 E-value=13 Score=33.56 Aligned_cols=65 Identities=17% Similarity=0.066 Sum_probs=50.7
Q ss_pred cceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 35 ASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 35 ~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+...||+-|++| |.+...|.-.=.||++.+|+++.+|...+ .+.+|.. ++.+..|-.||+....
T Consensus 218 ~~pyLyp~YGl~E-l~QGFaRssav~GgtymLn~~i~ein~tk------~v~~v~~----~~~~~ka~KiI~~~~~ 282 (434)
T COG5044 218 KSPYLYPRYGLGE-LSQGFARSSAVYGGTYMLNQAIDEINETK------DVETVDK----GSLTQKAGKIISSPTY 282 (434)
T ss_pred CCcceeeccCchh-hhHHHHHhhhccCceeecCcchhhhcccc------ceeeeec----CcceeecCcccCCccc
Confidence 3467889888885 89999999999999999999999998764 2334432 6667788888887553
No 279
>PRK13512 coenzyme A disulfide reductase; Provisional
Probab=67.48 E-value=17 Score=33.12 Aligned_cols=48 Identities=8% Similarity=0.027 Sum_probs=33.1
Q ss_pred HHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 55 KYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 55 ~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
.+.++.|++++++++|++|..++ + .|.+..+.+++ .+.+|++|.|+..
T Consensus 66 ~~~~~~~i~v~~~~~V~~Id~~~---~-----~v~~~~~~~~~~~~~~yd~lviAtGs 115 (438)
T PRK13512 66 KFYDRKQITVKTYHEVIAINDER---Q-----TVTVLNRKTNEQFEESYDKLILSPGA 115 (438)
T ss_pred HHHHhCCCEEEeCCEEEEEECCC---C-----EEEEEECCCCcEEeeecCEEEECCCC
Confidence 34466899999999999998876 2 34443211223 3578999988764
No 280
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=67.10 E-value=29 Score=33.52 Aligned_cols=67 Identities=7% Similarity=0.128 Sum_probs=45.3
Q ss_pred hHHHHHHHHHHCCc--EEEcCceeeEEEeccCCCCcceEEEEEEEec---CCC--eEEecCEEEEcCChhh-HhhhCC
Q 026885 49 LSGPIRKYITDKGG--RFHLRWGCREILYDKAANAETYVKGLAMSKA---TDK--KVVQADAYVAACDVPG-IKRLLP 118 (231)
Q Consensus 49 l~~~l~~~l~~~Gg--~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~---~~g--~~~~aD~vV~a~p~~~-~~~Ll~ 118 (231)
+-+.|.+.+++.|+ +++++++|+.++.+++ ++ .-..|.+... .+| ++++||.||-+=..+. +.+.+.
T Consensus 143 le~~L~~~l~~~g~~v~v~~g~~v~~~~~~~~-~~--~~V~v~l~~~~~~~~g~~~tv~A~~lVGaDGa~S~VR~~lg 217 (634)
T PRK08294 143 VHDYFLDVMRNSPTRLEPDYGREFVDLEVDEE-GE--YPVTVTLRRTDGEHEGEEETVRAKYVVGCDGARSRVRKAIG 217 (634)
T ss_pred HHHHHHHHHHhcCCceEEEeCcEEEEEEECCC-CC--CCEEEEEEECCCCCCCceEEEEeCEEEECCCCchHHHHhcC
Confidence 56667888888875 7899999999988742 11 1123445421 134 6889999999877764 666663
No 281
>COG0445 GidA Flavin-dependent tRNA uridine 5-carboxymethylaminomethyl modification enzyme GidA [Cell cycle control, cell division, chromosome partitioning]
Probab=67.06 E-value=7 Score=36.96 Aligned_cols=56 Identities=13% Similarity=0.203 Sum_probs=44.2
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+-+.|.+.|+..-.=-.....|+.|.++++ . +|+||++. +|..+.|++||.++..
T Consensus 101 ~Y~~~mk~~le~~~NL~l~q~~v~dli~e~~--~--~v~GV~t~---~G~~~~a~aVVlTTGT 156 (621)
T COG0445 101 LYRRAMKNELENQPNLHLLQGEVEDLIVEEG--Q--RVVGVVTA---DGPEFHAKAVVLTTGT 156 (621)
T ss_pred HHHHHHHHHHhcCCCceehHhhhHHHhhcCC--C--eEEEEEeC---CCCeeecCEEEEeecc
Confidence 4567788888877655556778899999762 3 69999985 8999999999999774
No 282
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=65.27 E-value=23 Score=33.44 Aligned_cols=52 Identities=17% Similarity=0.162 Sum_probs=38.7
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+.+++.|++++ +++|+.+..++ +...|... +| .+.+|.+|.|+..
T Consensus 61 ~l~~~l~~~~~~~gv~~~-~~~V~~i~~~~------~~~~V~~~---~g-~~~a~~lVlATGa 112 (555)
T TIGR03143 61 ELMQEMRQQAQDFGVKFL-QAEVLDVDFDG------DIKTIKTA---RG-DYKTLAVLIATGA 112 (555)
T ss_pred HHHHHHHHHHHHcCCEEe-ccEEEEEEecC------CEEEEEec---CC-EEEEeEEEECCCC
Confidence 567888888889999985 78999998764 33445442 44 5788999988765
No 283
>COG3486 IucD Lysine/ornithine N-monooxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=64.62 E-value=13 Score=33.88 Aligned_cols=51 Identities=14% Similarity=0.116 Sum_probs=36.9
Q ss_pred cEEEcCceeeEEEeccCCCCcceEEEEEEEe--cCCCeEEecCEEEEcCChh-hHhhhC
Q 026885 62 GRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVP-GIKRLL 117 (231)
Q Consensus 62 g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~--~~~g~~~~aD~vV~a~p~~-~~~~Ll 117 (231)
+.++.+++|+.++.+++ | + ..+.+.. ++..++++.|+||+|+..+ ....+|
T Consensus 293 v~l~~~~ev~~~~~~G~--g--~-~~l~~~~~~~~~~~t~~~D~vIlATGY~~~~P~fL 346 (436)
T COG3486 293 VRLLSLSEVQSVEPAGD--G--R-YRLTLRHHETGELETVETDAVILATGYRRAVPSFL 346 (436)
T ss_pred eeeccccceeeeecCCC--c--e-EEEEEeeccCCCceEEEeeEEEEecccccCCchhh
Confidence 58999999999999984 6 4 4454443 3345678899999999986 333343
No 284
>PLN02985 squalene monooxygenase
Probab=63.72 E-value=39 Score=31.70 Aligned_cols=64 Identities=14% Similarity=0.197 Sum_probs=43.9
Q ss_pred hhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCChh-hHhhhCC
Q 026885 48 YLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVP-GIKRLLP 118 (231)
Q Consensus 48 ~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~~-~~~~Ll~ 118 (231)
.+.+.|.+.+++. |++++.+ .|+++..++ + ++.+|++.. .+|+ ++.||.||.|-..+ .+.+.+.
T Consensus 148 ~l~~~L~~~a~~~~~V~i~~g-tvv~li~~~---~--~v~gV~~~~-~dG~~~~~~AdLVVgADG~~S~vR~~l~ 215 (514)
T PLN02985 148 RFVQRLRQKASSLPNVRLEEG-TVKSLIEEK---G--VIKGVTYKN-SAGEETTALAPLTVVCDGCYSNLRRSLN 215 (514)
T ss_pred HHHHHHHHHHHhCCCeEEEee-eEEEEEEcC---C--EEEEEEEEc-CCCCEEEEECCEEEECCCCchHHHHHhc
Confidence 4677888888777 6888866 577776654 4 677887642 2454 35689999887765 4665553
No 285
>COG1251 NirB NAD(P)H-nitrite reductase [Energy production and conversion]
Probab=63.56 E-value=12 Score=36.56 Aligned_cols=60 Identities=17% Similarity=0.123 Sum_probs=43.6
Q ss_pred hHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh-hhHhhhCCCc
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV-PGIKRLLPSS 120 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~-~~~~~Ll~~~ 120 (231)
++-.--++.+++|+++++|.+|..|..++ . .|.. ..|+++..|..|.|+-- +-+.. +|..
T Consensus 61 i~l~~~dwy~~~~i~L~~~~~v~~idr~~---k-----~V~t---~~g~~~~YDkLilATGS~pfi~P-iPG~ 121 (793)
T COG1251 61 ISLNRNDWYEENGITLYTGEKVIQIDRAN---K-----VVTT---DAGRTVSYDKLIIATGSYPFILP-IPGS 121 (793)
T ss_pred HhccchhhHHHcCcEEEcCCeeEEeccCc---c-----eEEc---cCCcEeecceeEEecCccccccC-CCCC
Confidence 34445678899999999999999998875 2 3544 38999999988877664 33333 5554
No 286
>PLN00093 geranylgeranyl diphosphate reductase; Provisional
Probab=60.60 E-value=41 Score=30.97 Aligned_cols=66 Identities=14% Similarity=0.060 Sum_probs=41.9
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEec------CCCeEEecCEEEEcCChh-hHhhhC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA------TDKKVVQADAYVAACDVP-GIKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~------~~g~~~~aD~vV~a~p~~-~~~~Ll 117 (231)
.|-+.|.+..++.|++++.+ .|++|..+++ ++ ....|.+... +++++++||.||-|-... .+.+.+
T Consensus 133 ~~d~~L~~~A~~~Ga~~~~~-~v~~i~~~~~-~~--~~~~v~~~~~~~~~~~g~~~~v~a~~VIgADG~~S~vrr~l 205 (450)
T PLN00093 133 VLDSFLRERAQSNGATLING-LFTRIDVPKD-PN--GPYVIHYTSYDSGSGAGTPKTLEVDAVIGADGANSRVAKDI 205 (450)
T ss_pred HHHHHHHHHHHHCCCEEEec-eEEEEEeccC-CC--CcEEEEEEeccccccCCCccEEEeCEEEEcCCcchHHHHHh
Confidence 45667888888999999876 5888876431 01 1234544321 223578999999998765 355544
No 287
>PLN02927 antheraxanthin epoxidase/zeaxanthin epoxidase
Probab=59.76 E-value=25 Score=34.21 Aligned_cols=51 Identities=12% Similarity=0.113 Sum_probs=36.2
Q ss_pred CCc-EEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-Hhh-hCCC
Q 026885 60 KGG-RFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKR-LLPS 119 (231)
Q Consensus 60 ~Gg-~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~-Ll~~ 119 (231)
.|. .++++++|++|+.++ + +++ |++. +|+++.+|.||.|-..+. +.+ +++.
T Consensus 204 lg~~~i~~g~~V~~I~~~~---d--~Vt-V~~~---dG~ti~aDlVVGADG~~S~vR~~l~g~ 257 (668)
T PLN02927 204 VGEDVIRNESNVVDFEDSG---D--KVT-VVLE---NGQRYEGDLLVGADGIWSKVRNNLFGR 257 (668)
T ss_pred CCCCEEEcCCEEEEEEEeC---C--EEE-EEEC---CCCEEEcCEEEECCCCCcHHHHHhcCC
Confidence 344 478999999998776 3 444 5553 788899999999988764 443 4453
No 288
>COG2072 TrkA Predicted flavoprotein involved in K+ transport [Inorganic ion transport and metabolism]
Probab=59.65 E-value=38 Score=31.14 Aligned_cols=55 Identities=18% Similarity=0.183 Sum_probs=42.3
Q ss_pred hHHHHHHHHHHCCc--EEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeE--EecCEEEEcCCh
Q 026885 49 LSGPIRKYITDKGG--RFHLRWGCREILYDKAANAETYVKGLAMSKATDKKV--VQADAYVAACDV 110 (231)
Q Consensus 49 l~~~l~~~l~~~Gg--~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~--~~aD~vV~a~p~ 110 (231)
+.+-+..++++.|. +|+++++|+....+.+ + +.+-|++. +|.. +.||.||+|+..
T Consensus 84 ~~~y~~~~~~~y~~~~~i~~~~~v~~~~~~~~--~--~~w~V~~~---~~~~~~~~a~~vV~ATG~ 142 (443)
T COG2072 84 IKDYIKDYLEKYGLRFQIRFNTRVEVADWDED--T--KRWTVTTS---DGGTGELTADFVVVATGH 142 (443)
T ss_pred HHHHHHHHHHHcCceeEEEcccceEEEEecCC--C--CeEEEEEc---CCCeeeEecCEEEEeecC
Confidence 67888999999986 6899999999888873 4 45667664 4433 569999999876
No 289
>PTZ00318 NADH dehydrogenase-like protein; Provisional
Probab=58.85 E-value=25 Score=31.84 Aligned_cols=55 Identities=16% Similarity=0.225 Sum_probs=38.0
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEE---e----cCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS---K----ATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~---~----~~~g~~~~aD~vV~a~p~~ 111 (231)
.+..++.+.++..|+++. ..+|++|..++ + . |.+. . ..+|+.+.+|++|.|+...
T Consensus 63 ~~~~~~~~~~~~~~~~~i-~~~V~~Id~~~---~--~---v~~~~~~~~~~~~~~g~~i~yD~LViAtGs~ 124 (424)
T PTZ00318 63 SICEPVRPALAKLPNRYL-RAVVYDVDFEE---K--R---VKCGVVSKSNNANVNTFSVPYDKLVVAHGAR 124 (424)
T ss_pred HhHHHHHHHhccCCeEEE-EEEEEEEEcCC---C--E---EEEecccccccccCCceEecCCEEEECCCcc
Confidence 455667777877888764 56999998876 3 2 3331 0 0256789999999998753
No 290
>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional
Probab=58.27 E-value=47 Score=32.15 Aligned_cols=50 Identities=14% Similarity=0.094 Sum_probs=32.6
Q ss_pred HHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEec---C---------CC--eEEecCEEEEcCCh
Q 026885 58 TDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA---T---------DK--KVVQADAYVAACDV 110 (231)
Q Consensus 58 ~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~---~---------~g--~~~~aD~vV~a~p~ 110 (231)
.+.|++|++++.+.+|..++ ++.++..+.+..+ . +| ..+++|.||.++..
T Consensus 372 ~~eGV~i~~~~~~~~i~~~~---~~~~v~~~~~~~~~~d~~G~~~~~~~~g~~~~i~~D~VI~AiG~ 435 (652)
T PRK12814 372 LAEGVSLRELAAPVSIERSE---GGLELTAIKMQQGEPDESGRRRPVPVEGSEFTLQADTVISAIGQ 435 (652)
T ss_pred HHcCCcEEeccCcEEEEecC---CeEEEEEEEEEecccCCCCCCcceecCCceEEEECCEEEECCCC
Confidence 46899999999999997655 3112333333210 0 12 25889999999885
No 291
>PF00743 FMO-like: Flavin-binding monooxygenase-like; InterPro: IPR020946 Flavin-containing monooxygenases (FMOs) constitute a family of xenobiotic-metabolising enzymes []. Using an NADPH cofactor and FAD prosthetic group, these microsomal proteins catalyse the oxygenation of nucleophilic nitrogen, sulphur, phosphorous and selenium atoms in a range of structurally diverse compounds. FMOs have been implicated in the metabolism of a number of pharmaceuticals, pesticides and toxicants. In man, lack of hepatic FMO-catalysed trimethylamine metabolism results in trimethylaminuria (fish odour syndrome). Five mammalian forms of FMO are now known and have been designated FMO1-FMO5 [, , , , ]. This is a recent nomenclature based on comparison of amino acid sequences, and has been introduced in an attempt to eliminate confusion inherent in multiple, laboratory-specific designations and tissue-based classifications []. Following the determination of the complete nucleotide sequence of Saccharomyces cerevisiae (Baker's yeast) [], a novel gene was found to encode a protein with similarity to mammalian monooygenases.; GO: 0004499 flavin-containing monooxygenase activity, 0050660 flavin adenine dinucleotide binding, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 2GVC_E 1VQW_B 2GV8_B 2XVI_B 2XVH_B 2XLS_A 2XLR_A 2XLU_D 2XLP_B 2XVE_A ....
Probab=57.80 E-value=18 Score=34.15 Aligned_cols=62 Identities=16% Similarity=0.033 Sum_probs=40.6
Q ss_pred chhHHHHHHHHHHCCc--EEEcCceeeEEEeccCCCCc-ceEEEEEEEecCCCe--EEecCEEEEcCChhh
Q 026885 47 VYLSGPIRKYITDKGG--RFHLRWGCREILYDKAANAE-TYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (231)
Q Consensus 47 ~~l~~~l~~~l~~~Gg--~i~~~~~V~~i~~~~~~~~~-~~v~~v~~~~~~~g~--~~~aD~vV~a~p~~~ 112 (231)
+.+.+=|..+.+.-|. .|++||+|++++..++ .+ ..-+.|++. .+|+ +..+|+||.|...+.
T Consensus 84 ~~v~~Yl~~Ya~~f~L~~~I~fnt~V~~v~~~~d--~~~~~~W~V~~~--~~g~~~~~~fD~VvvatG~~~ 150 (531)
T PF00743_consen 84 SEVLEYLESYAEHFGLRKHIRFNTEVVSVERDPD--FSATGKWEVTTE--NDGKEETEEFDAVVVATGHFS 150 (531)
T ss_dssp HHHHHHHHHHHHHTTGGGGEETSEEEEEEEEETT--TT-ETEEEEEET--TTTEEEEEEECEEEEEE-SSS
T ss_pred HHHHHHHHHHHhhhCCcceEEEccEEeEeeeccc--cCCCceEEEEee--cCCeEEEEEeCeEEEcCCCcC
Confidence 3577888888888775 6999999999998652 10 012445443 2443 345899998876543
No 292
>TIGR02028 ChlP geranylgeranyl reductase. This model represents the reductase which acts reduces the geranylgeranyl group to the phytyl group in the side chain of chlorophyll. It is unclear whether the enzyme has a preference for acting before or after the attachment of the side chain to chlorophyllide a by chlorophyll synthase. This clade is restricted to plants and cyanobacteria to separate it from the homologues which act in the biosynthesis of bacteriochlorophyll.
Probab=57.54 E-value=56 Score=29.36 Aligned_cols=66 Identities=12% Similarity=0.122 Sum_probs=41.4
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEec------CCCeEEecCEEEEcCChh-hHhhhC
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKA------TDKKVVQADAYVAACDVP-GIKRLL 117 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~------~~g~~~~aD~vV~a~p~~-~~~~Ll 117 (231)
.|-+.|.+...+.|++++.++ +..+....+ .+ ...+|++... +.+.+++||.||-|.... .+.+.+
T Consensus 94 ~~d~~L~~~a~~~G~~v~~~~-~~~i~~~~~-~~--~~~~v~~~~~~~~~~~g~~~~i~a~~VIgADG~~S~v~~~~ 166 (398)
T TIGR02028 94 VLDSFLRRRAADAGATLINGL-VTKLSLPAD-AD--DPYTLHYISSDSGGPSGTRCTLEVDAVIGADGANSRVAKEI 166 (398)
T ss_pred HHHHHHHHHHHHCCcEEEcce-EEEEEeccC-CC--ceEEEEEeeccccccCCCccEEEeCEEEECCCcchHHHHHh
Confidence 445568888889999998885 777754221 02 2345544211 123478999999998865 355544
No 293
>COG0492 TrxB Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=57.31 E-value=35 Score=29.77 Aligned_cols=64 Identities=16% Similarity=0.132 Sum_probs=44.0
Q ss_pred eeeeCCCCcchhHHHHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEec-CCCeEEecCEEEEcCCh
Q 026885 38 LRMLKGSPDVYLSGPIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKA-TDKKVVQADAYVAACDV 110 (231)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~-~~g~~~~aD~vV~a~p~ 110 (231)
+-+.+..+.. -+.+++.++++ ++++++|++|++|.-++ +.+|++.+. +..+.+.+|.|..++..
T Consensus 171 lv~r~~~~ra--~~~~~~~l~~~~~i~~~~~~~i~ei~G~~-------v~~v~l~~~~~~~~~~~~~gvf~~iG~ 236 (305)
T COG0492 171 LVHRRDEFRA--EEILVERLKKNVKIEVLTNTVVKEILGDD-------VEGVVLKNVKGEEKELPVDGVFIAIGH 236 (305)
T ss_pred EEecCcccCc--CHHHHHHHHhcCCeEEEeCCceeEEecCc-------cceEEEEecCCceEEEEeceEEEecCC
Confidence 3334444542 57888888888 89999999999996442 457777632 12236778998888664
No 294
>TIGR01789 lycopene_cycl lycopene cyclase. This model represents a family of bacterial lycopene cyclases catalyzing the transformation of lycopene to carotene. These enzymes are found in a limited spectrum of alpha and gamma proteobacteria as well as Flavobacterium.
Probab=56.60 E-value=21 Score=31.90 Aligned_cols=47 Identities=9% Similarity=0.105 Sum_probs=32.7
Q ss_pred hHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
|.+.+.+.+ +..|+++++|+++ +. + +|++. +|++++||.||-+.+++
T Consensus 91 f~~~l~~~l---~~~i~~~~~V~~v--~~---~-----~v~l~---dg~~~~A~~VI~A~G~~ 137 (370)
T TIGR01789 91 FHEGLLQAF---PEGVILGRKAVGL--DA---D-----GVDLA---PGTRINARSVIDCRGFK 137 (370)
T ss_pred HHHHHHHhh---cccEEecCEEEEE--eC---C-----EEEEC---CCCEEEeeEEEECCCCC
Confidence 344444433 3338889999988 33 2 35553 88899999999998865
No 295
>PRK10262 thioredoxin reductase; Provisional
Probab=55.90 E-value=56 Score=28.13 Aligned_cols=53 Identities=13% Similarity=0.054 Sum_probs=37.0
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
.+.+.+.+.+...+.+++.+ +|++|...+ + ...+.. +...+.+|.||.|+...
T Consensus 64 ~~~~~~~~~~~~~~~~~~~~-~v~~v~~~~---~---~~~v~~----~~~~~~~d~vilAtG~~ 116 (321)
T PRK10262 64 LLMERMHEHATKFETEIIFD-HINKVDLQN---R---PFRLTG----DSGEYTCDALIIATGAS 116 (321)
T ss_pred HHHHHHHHHHHHCCCEEEee-EEEEEEecC---C---eEEEEe----cCCEEEECEEEECCCCC
Confidence 45677788888888888886 677887765 3 122322 33468899999998753
No 296
>TIGR01424 gluta_reduc_2 glutathione-disulfide reductase, plant. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of plants and some bacteria, including cyanobacteria.
Probab=55.10 E-value=32 Score=31.36 Aligned_cols=49 Identities=18% Similarity=0.169 Sum_probs=33.7
Q ss_pred hHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
+.+.+.+.+++.|+++..+ +|+.+..+ ++ .+ . .+|+.+.+|++|.|+..
T Consensus 92 ~~~~~~~~l~~~gV~~~~g-~~~~v~~~-------~v-~v--~--~~g~~~~~d~lIiATGs 140 (446)
T TIGR01424 92 LSGLYKRLLANAGVELLEG-RARLVGPN-------TV-EV--L--QDGTTYTAKKILIAVGG 140 (446)
T ss_pred HHHHHHHHHHhCCcEEEEE-EEEEecCC-------EE-EE--e--cCCeEEEcCEEEEecCC
Confidence 4556677788899999877 66665322 11 22 2 26778999999999774
No 297
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=54.47 E-value=45 Score=31.51 Aligned_cols=52 Identities=10% Similarity=0.028 Sum_probs=32.1
Q ss_pred HHHHH-HHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEE----ecCE----EEEcCCh
Q 026885 53 IRKYI-TDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVV----QADA----YVAACDV 110 (231)
Q Consensus 53 l~~~l-~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~----~aD~----vV~a~p~ 110 (231)
+.+.+ +.+|++|+++++|++|.-+ + ++..+.+....+|+.. .+|. ||.++..
T Consensus 184 ~~~~~~~~~gV~i~~~~~V~~i~~~----~--~v~~v~~~~~~~G~~~~~~~~~D~~~~~Vi~a~G~ 244 (555)
T TIGR03143 184 IAEKVKNHPKIEVKFNTELKEATGD----D--GLRYAKFVNNVTGEITEYKAPKDAGTFGVFVFVGY 244 (555)
T ss_pred HHHHHHhCCCcEEEeCCEEEEEEcC----C--cEEEEEEEECCCCCEEEEeccccccceEEEEEeCC
Confidence 33444 4569999999999999743 3 4555544322245433 2665 8877664
No 298
>COG0029 NadB Aspartate oxidase [Coenzyme metabolism]
Probab=54.42 E-value=42 Score=31.41 Aligned_cols=67 Identities=10% Similarity=0.062 Sum_probs=50.8
Q ss_pred eeeeCCCCcchhHHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCC
Q 026885 38 LRMLKGSPDVYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACD 109 (231)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p 109 (231)
+-...+..+..+...|.+.+++ -+++|+-++.+.+|.++++ . .+.||.+... ++ .++.++.||+|+.
T Consensus 124 IlH~~~~TG~~I~~~L~~~v~~~p~I~v~e~~~a~~li~~~~--~--~~~Gv~~~~~-~~~~~~~~a~~vVLATG 193 (518)
T COG0029 124 ILHAADATGKEIMTALLKKVRNRPNITVLEGAEALDLIIEDG--I--GVAGVLVLNR-NGELGTFRAKAVVLATG 193 (518)
T ss_pred EEEecCCccHHHHHHHHHHHhcCCCcEEEecchhhhhhhcCC--c--eEeEEEEecC-CCeEEEEecCeEEEecC
Confidence 4445555666889999999987 6999999999999999982 2 4558877531 22 5677899999876
No 299
>TIGR01317 GOGAT_sm_gam glutamate synthases, NADH/NADPH, small subunit. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit or homologous region. TIGR01316 describes a family in several archaeal and deeply branched bacterial lineages of a homotetrameric form for which there is no large subunit. Another model describes glutamate synthase small subunit from gamma and some alpha subdivision Proteobacteria plus paralogs of unknown function. This model describes the small subunit, or homologous region of longer forms proteins, of eukaryotes, Gram-positive bacteria, cyanobacteria, and some other lineages. All members with known function participate in NADH or NADPH-dependent reactions to interconvert between glutamine plus 2-oxoglutarate and two molecules of glutamate.
Probab=53.89 E-value=41 Score=31.21 Aligned_cols=53 Identities=19% Similarity=0.187 Sum_probs=34.2
Q ss_pred HHHHHHCCcE-EEcCceeeEEEeccCCCCcceEEEEEEEe-----cCCC-----------eEEecCEEEEcCCh
Q 026885 54 RKYITDKGGR-FHLRWGCREILYDKAANAETYVKGLAMSK-----ATDK-----------KVVQADAYVAACDV 110 (231)
Q Consensus 54 ~~~l~~~Gg~-i~~~~~V~~i~~~~~~~~~~~v~~v~~~~-----~~~g-----------~~~~aD~vV~a~p~ 110 (231)
.+.++..|++ +++++.+.+|.-+++ | ++++|++.+ +.+| +++++|.||.++..
T Consensus 343 ~e~~~~~gv~~~~~~~~~~~i~~~~~--g--~v~~v~~~~~~~~~~~~Gr~~p~~~~g~~~~i~~D~Vi~AiG~ 412 (485)
T TIGR01317 343 EEAAAHYGRDPREYSILTKEFIGDDE--G--KVTALRTVRVEWKKSQDGKWQFVEIPGSEEVFEADLVLLAMGF 412 (485)
T ss_pred HhhhhhcCccceEEecCcEEEEEcCC--C--eEEEEEEEEEEeccCCCCCccceecCCceEEEECCEEEEccCc
Confidence 3344445665 467899999976542 5 788876421 1122 36899999999774
No 300
>PLN02785 Protein HOTHEAD
Probab=53.30 E-value=36 Score=32.52 Aligned_cols=39 Identities=13% Similarity=0.169 Sum_probs=27.8
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe
Q 026885 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK 92 (231)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~ 92 (231)
+.......+.+|++++.|++|.++++ ++..+++||++.+
T Consensus 226 l~~~~~~~nl~Vl~~a~V~rIl~~~~-~~~~ra~GV~~~~ 264 (587)
T PLN02785 226 LLAAGNPNKLRVLLHATVQKIVFDTS-GKRPRATGVIFKD 264 (587)
T ss_pred HHhhcCCCCeEEEeCCEEEEEEEcCC-CCCceEEEEEEEE
Confidence 33444556799999999999999852 0112799998853
No 301
>PF13434 K_oxygenase: L-lysine 6-monooxygenase (NADPH-requiring); PDB: 3S61_B 3S5W_B.
Probab=50.67 E-value=27 Score=30.89 Aligned_cols=61 Identities=13% Similarity=0.027 Sum_probs=37.7
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe-cCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK-ATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~-~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+=+.-.+++.+..++++++|++|...++ ++. ....|.+.+ +++++++.|+.||.++..
T Consensus 96 ef~dYl~Wva~~~~~~v~~~~~V~~I~~~~~-~~~-~~~~V~~~~~~g~~~~~~ar~vVla~G~ 157 (341)
T PF13434_consen 96 EFNDYLRWVAEQLDNQVRYGSEVTSIEPDDD-GDE-DLFRVTTRDSDGDGETYRARNVVLATGG 157 (341)
T ss_dssp HHHHHHHHHHCCGTTTEEESEEEEEEEEEEE-TTE-EEEEEEEEETTS-EEEEEESEEEE----
T ss_pred HHHHHHHHHHHhCCCceEECCEEEEEEEecC-CCc-cEEEEEEeecCCCeeEEEeCeEEECcCC
Confidence 4555565555566656999999999999873 110 245555532 224578899999998773
No 302
>PF03197 FRD2: Bacteriophage FRD2 protein; InterPro: IPR004885 This is group of bacteriophage proteins has no known function.
Probab=49.13 E-value=56 Score=23.49 Aligned_cols=40 Identities=23% Similarity=0.499 Sum_probs=27.6
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecC
Q 026885 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQAD 102 (231)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD 102 (231)
|++.|+++|+.+ +|..+...+ |-.-++.|.+. ||+.+.+|
T Consensus 2 mVklie~~G~~F----~V~dm~~~d---g~~~V~~ie~~---dGti~~~~ 41 (102)
T PF03197_consen 2 MVKLIEENGGWF----EVKDMSSID---GDYFVEKIEMA---DGTIYNSD 41 (102)
T ss_pred HhHHHHHcCCcE----EEeeeEecc---cceeEEEEEec---CCcEEcCC
Confidence 688999999988 567777665 31146677775 77766543
No 303
>PRK06116 glutathione reductase; Validated
Probab=44.93 E-value=51 Score=30.01 Aligned_cols=46 Identities=17% Similarity=0.224 Sum_probs=30.9
Q ss_pred HHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+.+++.|++++.++ ++.+ +. . .|.+ +|+.+.+|.+|.|+..
T Consensus 96 ~~~~~~~l~~~gv~~~~g~-~~~v--~~---~-----~v~~----~g~~~~~d~lViATGs 141 (450)
T PRK06116 96 HGSYRNGLENNGVDLIEGF-ARFV--DA---H-----TVEV----NGERYTADHILIATGG 141 (450)
T ss_pred HHHHHHHHHhCCCEEEEEE-EEEc--cC---C-----EEEE----CCEEEEeCEEEEecCC
Confidence 3445556777899999885 4444 22 2 2444 5678899999998764
No 304
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=44.37 E-value=68 Score=32.85 Aligned_cols=50 Identities=16% Similarity=0.179 Sum_probs=38.0
Q ss_pred HHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecC---------------------------CCeEEecCEEEEcC
Q 026885 56 YITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT---------------------------DKKVVQADAYVAAC 108 (231)
Q Consensus 56 ~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~---------------------------~g~~~~aD~vV~a~ 108 (231)
...+.|++|+.++.-.+|..+++ | +++++++.... ...+++||.||.|+
T Consensus 649 ~A~eEGV~f~~~~~P~~i~~d~~--g--~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~vi~A~ 724 (1028)
T PRK06567 649 YALALGVDFKENMQPLRINVDKY--G--HVESVEFENRNRHCEQSKTAWQSHEFGLTRLPRQCYAFPRNDIKTKTVIMAI 724 (1028)
T ss_pred HHHHcCcEEEecCCcEEEEecCC--C--eEEEEEEEEEecccccccccccccccccCCcCcccCCCccccccCCEEEEec
Confidence 34679999999999999998763 6 89988775211 12467899999887
Q ss_pred C
Q 026885 109 D 109 (231)
Q Consensus 109 p 109 (231)
.
T Consensus 725 G 725 (1028)
T PRK06567 725 G 725 (1028)
T ss_pred c
Confidence 6
No 305
>TIGR01421 gluta_reduc_1 glutathione-disulfide reductase, animal/bacterial. The tripeptide glutathione is an important reductant, e.g., for maintaining the cellular thiol/disulfide status and for protecting against reactive oxygen species such as hydrogen peroxide. Glutathione-disulfide reductase regenerates reduced glutathione from oxidized glutathione (glutathione disulfide) + NADPH. This model represents one of two closely related subfamilies of glutathione-disulfide reductase. Both are closely related to trypanothione reductase, and separate models are built so each of the three can describe proteins with conserved function. This model describes glutathione-disulfide reductases of animals, yeast, and a number of animal-resident bacteria.
Probab=44.24 E-value=59 Score=29.76 Aligned_cols=45 Identities=9% Similarity=0.008 Sum_probs=31.5
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
+.+.+.+++.|+++++++.+. .++ + .|.+ +|+.+.+|+||.|+..
T Consensus 95 ~~~~~~l~~~gv~~~~g~~~~---~~~---~-----~v~v----~~~~~~~d~vIiAtGs 139 (450)
T TIGR01421 95 GIYQKNLEKNKVDVIFGHARF---TKD---G-----TVEV----NGRDYTAPHILIATGG 139 (450)
T ss_pred HHHHHHHHhCCCEEEEEEEEE---ccC---C-----EEEE----CCEEEEeCEEEEecCC
Confidence 345666788899999998652 222 2 2444 6778899999998764
No 306
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=44.17 E-value=26 Score=35.61 Aligned_cols=34 Identities=18% Similarity=0.084 Sum_probs=26.3
Q ss_pred eeeeCCCCcchhHHHHHHHHHHCCcEEEcCceee
Q 026885 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCR 71 (231)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~ 71 (231)
.|+|.-.+...+++...+.+++.|++|++|+.|.
T Consensus 347 yGIP~~rlp~~vi~~~i~~l~~~Gv~f~~n~~vG 380 (944)
T PRK12779 347 YGIPEFRLPNQLIDDVVEKIKLLGGRFVKNFVVG 380 (944)
T ss_pred ccCCCCcChHHHHHHHHHHHHhhcCeEEEeEEec
Confidence 4555444445678888999999999999998773
No 307
>PTZ00367 squalene epoxidase; Provisional
Probab=42.65 E-value=70 Score=30.50 Aligned_cols=67 Identities=13% Similarity=0.079 Sum_probs=42.3
Q ss_pred hHHHHHHHH---HHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecC----------------------CCeEEecCE
Q 026885 49 LSGPIRKYI---TDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKAT----------------------DKKVVQADA 103 (231)
Q Consensus 49 l~~~l~~~l---~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~----------------------~g~~~~aD~ 103 (231)
+.+.|.+.+ ...|++++ ..+|+++..+++ .-+.++.+|++.... +|+++.||.
T Consensus 133 ~~~~Lr~~a~~~~~~~V~v~-~~~v~~l~~~~~-~~~~~v~gV~~~~~~~~~~~~~~f~~~~~~~~~~~~~~g~~~~AdL 210 (567)
T PTZ00367 133 FVQNLRSHVFHNCQDNVTML-EGTVNSLLEEGP-GFSERAYGVEYTEAEKYDVPENPFREDPPSANPSATTVRKVATAPL 210 (567)
T ss_pred HHHHHHHHHHhhcCCCcEEE-EeEEEEeccccC-ccCCeeEEEEEecCCcccccccccccccccccccccccceEEEeCE
Confidence 556666666 34578886 457888876541 000147788765322 367889999
Q ss_pred EEEcCChh-hHhhhC
Q 026885 104 YVAACDVP-GIKRLL 117 (231)
Q Consensus 104 vV~a~p~~-~~~~Ll 117 (231)
||.|=..+ .+++.+
T Consensus 211 vVgADG~~S~vR~~l 225 (567)
T PTZ00367 211 VVMCDGGMSKFKSRY 225 (567)
T ss_pred EEECCCcchHHHHHc
Confidence 99887765 465554
No 308
>PRK06416 dihydrolipoamide dehydrogenase; Reviewed
Probab=40.86 E-value=69 Score=29.22 Aligned_cols=49 Identities=8% Similarity=0.058 Sum_probs=30.6
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
+.+.+.+++.|++++.++ ++.+ +. . + ..|... .+++.+.+|++|.|+..
T Consensus 96 ~~~~~~~~~~gv~~~~g~-~~~~--~~---~--~-~~v~~~--~~~~~~~~d~lViAtGs 144 (462)
T PRK06416 96 GGVEGLLKKNKVDIIRGE-AKLV--DP---N--T-VRVMTE--DGEQTYTAKNIILATGS 144 (462)
T ss_pred HHHHHHHHhCCCEEEEEE-EEEc--cC---C--E-EEEecC--CCcEEEEeCEEEEeCCC
Confidence 346667788999999885 3333 32 1 1 223221 13467899999999864
No 309
>PLN02546 glutathione reductase
Probab=39.89 E-value=68 Score=30.49 Aligned_cols=47 Identities=15% Similarity=0.146 Sum_probs=30.8
Q ss_pred hHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
+.+.+.+.+++.|++++.+. ++.+. . . .|.+ +|+.+.+|.+|.|+..
T Consensus 180 l~~~~~~~l~~~gV~~i~G~-a~~vd--~---~-----~V~v----~G~~~~~D~LVIATGs 226 (558)
T PLN02546 180 LTGIYKNILKNAGVTLIEGR-GKIVD--P---H-----TVDV----DGKLYTARNILIAVGG 226 (558)
T ss_pred HHHHHHHHHHhCCcEEEEeE-EEEcc--C---C-----EEEE----CCEEEECCEEEEeCCC
Confidence 44556666788899988763 33332 2 1 2444 6778899999998764
No 310
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=39.74 E-value=88 Score=32.12 Aligned_cols=54 Identities=13% Similarity=0.107 Sum_probs=34.0
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEE-------------EecCCCeEEecCEEEEcCChh
Q 026885 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAM-------------SKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~-------------~~~~~g~~~~aD~vV~a~p~~ 111 (231)
+.+.+. .+.|++|+.++.+++|..+ | +++...+ ...+++.++++|.||.++...
T Consensus 712 eEle~A-leeGVe~~~~~~p~~I~~d----G--~l~~~~~~lg~~d~~Gr~~~v~tg~~~~I~aD~VIvAIG~~ 778 (1019)
T PRK09853 712 EEYEEA-LEDGVEFKELLNPESFDAD----G--TLTCRVMKLGEPDESGRRRPVETGETVTLEADTVITAIGEQ 778 (1019)
T ss_pred HHHHHH-HHcCCEEEeCCceEEEEcC----C--cEEEEEEEeecccCCCceEEeeCCCeEEEEeCEEEECCCCc
Confidence 334444 3579999999999998532 3 3221111 011345688999999998864
No 311
>PRK07845 flavoprotein disulfide reductase; Reviewed
Probab=38.13 E-value=89 Score=28.69 Aligned_cols=51 Identities=24% Similarity=0.225 Sum_probs=32.1
Q ss_pred HHHHHHHHHHCCcEEEcCceeeEEE--eccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 50 SGPIRKYITDKGGRFHLRWGCREIL--YDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~--~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
.+.+.+.+++.|++++.++- +.+. .+. . + ..|... +|+ .+.+|++|.|+..
T Consensus 95 ~~~~~~~l~~~gV~~~~g~~-~~~~~~~~~---~--~-v~V~~~---~g~~~~~~~d~lViATGs 149 (466)
T PRK07845 95 SADIRARLEREGVRVIAGRG-RLIDPGLGP---H--R-VKVTTA---DGGEETLDADVVLIATGA 149 (466)
T ss_pred HHHHHHHHHHCCCEEEEEEE-EEeecccCC---C--E-EEEEeC---CCceEEEecCEEEEcCCC
Confidence 34566777888999988753 3333 333 2 1 234332 454 6899999999875
No 312
>COG1445 FrwB Phosphotransferase system fructose-specific component IIB [Carbohydrate transport and metabolism]
Probab=35.43 E-value=26 Score=26.34 Aligned_cols=53 Identities=19% Similarity=0.294 Sum_probs=34.3
Q ss_pred HHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh-HhhhC
Q 026885 50 SGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG-IKRLL 117 (231)
Q Consensus 50 ~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~-~~~Ll 117 (231)
.++|.+..+++|.+| ++++.|. .|+.=. -+..+.-.||.||.+.|... +.+.+
T Consensus 21 AeaLe~~A~~~g~~I-------KVETqGs-------~G~eN~-LT~edI~~Ad~VI~AaD~~i~~~~ff 74 (122)
T COG1445 21 AEALEKAAKKLGVEI-------KVETQGA-------VGIENR-LTAEDIAAADVVILAADIEVDLSRFF 74 (122)
T ss_pred HHHHHHHHHHcCCeE-------EEEcCCc-------ccccCc-CCHHHHHhCCEEEEEecccccHhHhh
Confidence 688999999999988 4566651 233210 01344556999999999764 44443
No 313
>KOG4716 consensus Thioredoxin reductase [Posttranslational modification, protein turnover, chaperones]
Probab=35.39 E-value=70 Score=28.83 Aligned_cols=65 Identities=8% Similarity=-0.010 Sum_probs=45.3
Q ss_pred CCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe--cCCCeEEecCEEEEcCChhh
Q 026885 43 GSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK--ATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 43 g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~--~~~g~~~~aD~vV~a~p~~~ 112 (231)
.++.+.+++.+.+.++++|+++.-.+-.++++..++ | + ..|.... ++++..-+.|.|+.|+.-..
T Consensus 234 rGFDqdmae~v~~~m~~~Gikf~~~~vp~~Veq~~~--g--~-l~v~~k~t~t~~~~~~~ydTVl~AiGR~~ 300 (503)
T KOG4716|consen 234 RGFDQDMAELVAEHMEERGIKFLRKTVPERVEQIDD--G--K-LRVFYKNTNTGEEGEEEYDTVLWAIGRKA 300 (503)
T ss_pred ccccHHHHHHHHHHHHHhCCceeecccceeeeeccC--C--c-EEEEeecccccccccchhhhhhhhhcccc
Confidence 355567899999999999999999988888887763 5 3 2232221 12223345899999988644
No 314
>COG1053 SdhA Succinate dehydrogenase/fumarate reductase, flavoprotein subunit [Energy production and conversion]
Probab=35.23 E-value=83 Score=30.01 Aligned_cols=63 Identities=17% Similarity=0.172 Sum_probs=45.7
Q ss_pred cchhHHHHHHHHHH-CCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCChhh
Q 026885 46 DVYLSGPIRKYITD-KGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDVPG 112 (231)
Q Consensus 46 ~~~l~~~l~~~l~~-~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~~~ 112 (231)
+..+...|.+.+.+ .+.+|+-+..|.+|.++++ + ++.|+......+|+ .+.+++||.++.-..
T Consensus 137 G~~ll~~L~~~~~~~~~~~~~~~~~~~~l~~~~~--~--~v~Gvv~~~~~~g~~~~~~akavilaTGG~g 202 (562)
T COG1053 137 GHELLHTLYEQLLKFSGIEIFDEYFVLDLLVDDG--G--GVAGVVARDLRTGELYVFRAKAVILATGGAG 202 (562)
T ss_pred cHHHHHHHHHHHHHhhcchhhhhhhhhhheecCC--C--cEEEEEEEEecCCcEEEEecCcEEEccCCce
Confidence 44577788888887 6779999999999999873 4 47777654333554 445889999986443
No 315
>KOG2415 consensus Electron transfer flavoprotein ubiquinone oxidoreductase [Energy production and conversion]
Probab=35.09 E-value=56 Score=30.27 Aligned_cols=60 Identities=22% Similarity=0.249 Sum_probs=44.8
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEe---cCC---------CeEEecCEEEEcCChh
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSK---ATD---------KKVVQADAYVAACDVP 111 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~---~~~---------g~~~~aD~vV~a~p~~ 111 (231)
.++.-|-+..|+.|++|.-+..+.++.+++| | .|+||.+++ +.+ |-.+.|..-|.|-..+
T Consensus 184 ~~v~wLg~kAEe~GvEiyPg~aaSevly~ed--g--sVkGiaT~D~GI~k~G~pKd~FerGme~hak~TifAEGc~ 255 (621)
T KOG2415|consen 184 QLVRWLGEKAEELGVEIYPGFAASEVLYDED--G--SVKGIATNDVGISKDGAPKDTFERGMEFHAKVTIFAEGCH 255 (621)
T ss_pred HHHHHHHHHHHhhCceeccccchhheeEcCC--C--cEeeEeeccccccCCCCccccccccceecceeEEEecccc
Confidence 4677788888999999999999999999985 7 899997763 112 2234466677776554
No 316
>KOG4405 consensus GDP dissociation inhibitor [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=33.97 E-value=1.3e+02 Score=27.89 Aligned_cols=90 Identities=14% Similarity=0.156 Sum_probs=62.0
Q ss_pred CCCCCcccHHHHHHHHHHHHh---ccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEE
Q 026885 11 FIDCDNISARCMLTIFALFAT---KTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKG 87 (231)
Q Consensus 11 ~~~~~~~Sa~~~~~~l~~~~~---~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~ 87 (231)
..++.+.++.--+...+.|+. +...+.+.||-=|-+| |.+..-|...=.||=..++.+|+.|..++ +..+++.
T Consensus 248 M~~~~~~tt~eGm~at~~fl~slGrfgntpfLfPlYGqGE-LpQcFCRlcAVfGgIYcLr~~Vq~ivldk---~s~~~~~ 323 (547)
T KOG4405|consen 248 MLSESQLTTIEGMDATKNFLTSLGRFGNTPFLFPLYGQGE-LPQCFCRLCAVFGGIYCLRRPVQAIVLDK---ESLDCKA 323 (547)
T ss_pred hcCcccccHHHHHHHHHHHHHHhhccCCCcceeeccCCCc-chHHHHHHHHHhcceEEeccchhheeecc---cccchhh
Confidence 344555777776666666653 3334468888777775 89999999999999999999999999987 3112221
Q ss_pred EEEEecCCCeEEecCEEEEc
Q 026885 88 LAMSKATDKKVVQADAYVAA 107 (231)
Q Consensus 88 v~~~~~~~g~~~~aD~vV~a 107 (231)
+ +. ..|+.+.+.++|++
T Consensus 324 ~-l~--s~g~ri~~k~~v~s 340 (547)
T KOG4405|consen 324 I-LD--SFGQRINAKNFVVS 340 (547)
T ss_pred h-Hh--hhcchhcceeeeec
Confidence 2 21 36777777777665
No 317
>PRK06370 mercuric reductase; Validated
Probab=32.47 E-value=1.1e+02 Score=27.92 Aligned_cols=44 Identities=5% Similarity=0.000 Sum_probs=30.5
Q ss_pred HHHHHHHHC-CcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 52 PIRKYITDK-GGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 52 ~l~~~l~~~-Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+.+.+++. |+++++++.+. .++ + .|.+ +|+.+.+|++|.|+..
T Consensus 99 ~~~~~~~~~~gv~v~~g~~~~---~~~---~-----~v~v----~~~~~~~d~lViATGs 143 (463)
T PRK06370 99 GSEQWLRGLEGVDVFRGHARF---ESP---N-----TVRV----GGETLRAKRIFINTGA 143 (463)
T ss_pred hHHHHHhcCCCcEEEEEEEEE---ccC---C-----EEEE----CcEEEEeCEEEEcCCC
Confidence 445566776 99999998762 232 2 2444 5677899999999875
No 318
>PRK05976 dihydrolipoamide dehydrogenase; Validated
Probab=31.59 E-value=1.3e+02 Score=27.64 Aligned_cols=52 Identities=4% Similarity=-0.060 Sum_probs=31.4
Q ss_pred HHHHHHHHCCcEEEcCceeeEEEec--cCCCCcceEEEEEEEecCCC--eEEecCEEEEcCCh
Q 026885 52 PIRKYITDKGGRFHLRWGCREILYD--KAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (231)
Q Consensus 52 ~l~~~l~~~Gg~i~~~~~V~~i~~~--~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~ 110 (231)
...+.+++.|++++.+. ++.+..+ ++ .. +-..|.+. +| +.+.+|++|.|+..
T Consensus 97 ~~~~~~~~~gv~~~~g~-a~~i~~~~~~~-~~--~~~~v~~~---~g~~~~~~~d~lViATGs 152 (472)
T PRK05976 97 GVAALLKKGKIDVFHGI-GRILGPSIFSP-MP--GTVSVETE---TGENEMIIPENLLIATGS 152 (472)
T ss_pred HHHHHHHhCCCEEEEEE-EEEeCCCCCcC-Cc--eEEEEEeC---CCceEEEEcCEEEEeCCC
Confidence 34456677899999974 5556543 00 01 12234432 44 57899999998764
No 319
>COG0493 GltD NADPH-dependent glutamate synthase beta chain and related oxidoreductases [Amino acid transport and metabolism / General function prediction only]
Probab=29.57 E-value=54 Score=30.39 Aligned_cols=39 Identities=13% Similarity=0.058 Sum_probs=31.3
Q ss_pred eeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceee-EEEe
Q 026885 37 LLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCR-EILY 75 (231)
Q Consensus 37 ~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~-~i~~ 75 (231)
.+|+|.--+...+++...+.|++.|++|++|++|- .|..
T Consensus 163 ~yGIP~~kl~k~i~d~~i~~l~~~Gv~~~~~~~vG~~it~ 202 (457)
T COG0493 163 LYGIPDFKLPKDILDRRLELLERSGVEFKLNVRVGRDITL 202 (457)
T ss_pred EecCchhhccchHHHHHHHHHHHcCeEEEEcceECCcCCH
Confidence 36666656666789999999999999999999996 4433
No 320
>PRK05249 soluble pyridine nucleotide transhydrogenase; Provisional
Probab=29.01 E-value=1.6e+02 Score=26.79 Aligned_cols=48 Identities=17% Similarity=0.061 Sum_probs=30.0
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
+.+.+.+++.|++++.++ ++.+ +. + + ..|... +|+ .+.+|.+|.|+..
T Consensus 98 ~~~~~~~~~~~v~~~~g~-~~~~--~~---~--~-~~v~~~---~g~~~~~~~d~lviATGs 147 (461)
T PRK05249 98 EVRRGQYERNRVDLIQGR-ARFV--DP---H--T-VEVECP---DGEVETLTADKIVIATGS 147 (461)
T ss_pred HHHHHHHHHCCCEEEEEE-EEEe--cC---C--E-EEEEeC---CCceEEEEcCEEEEcCCC
Confidence 345566778899999875 3333 22 2 1 233332 453 6889999999864
No 321
>TIGR03315 Se_ygfK putative selenate reductase, YgfK subunit. Members of this protein family are YgfK, predicted to be one subunit of a three-subunit, molybdopterin-containing selenate reductase. This enzyme is found, typically, in genomic regions associated with xanthine dehydrogenase homologs predicted to belong to the selenium-dependent molybdenum hydroxylases (SDMH). Therefore, the selenate reductase is suggested to play a role in furnishing selenide for SelD, the selenophosphate synthase.
Probab=28.34 E-value=2.4e+02 Score=29.08 Aligned_cols=53 Identities=13% Similarity=0.098 Sum_probs=32.4
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEE-------------ecCCCeEEecCEEEEcCChh
Q 026885 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMS-------------KATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~-------------~~~~g~~~~aD~vV~a~p~~ 111 (231)
+.+.+. .+.|++|++++.+.+|. + + +++...+. ..+++.++++|.||.|+...
T Consensus 710 eEl~~a-leeGVe~~~~~~p~~I~--~---g--~l~v~~~~l~~~d~sGr~~~v~~Gee~~I~aD~VIvAiG~~ 775 (1012)
T TIGR03315 710 EELEEA-LEDGVDFKELLSPESFE--D---G--TLTCEVMKLGEPDASGRRRPVGTGETVDLPADTVIAAVGEQ 775 (1012)
T ss_pred HHHHHH-HHcCCEEEeCCceEEEE--C---C--eEEEEEEEeecccCCCceeeecCCCeEEEEeCEEEEecCCc
Confidence 334444 35899999999988886 2 2 33221110 01223368999999998853
No 322
>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional
Probab=28.02 E-value=38 Score=33.29 Aligned_cols=33 Identities=6% Similarity=-0.108 Sum_probs=24.1
Q ss_pred eeeeCCCCcchhHHHHHHHHHHCCcEEEcCcee
Q 026885 38 LRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGC 70 (231)
Q Consensus 38 ~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V 70 (231)
.|++.-.+...+.+...+.+++.|++|++|+.|
T Consensus 472 ~gip~~rlp~~~~~~~~~~l~~~gv~~~~~~~v 504 (752)
T PRK12778 472 YGIPEFRLPKKIVDVEIENLKKLGVKFETDVIV 504 (752)
T ss_pred ecCCCCCCCHHHHHHHHHHHHHCCCEEECCCEE
Confidence 344443344456777788899999999999876
No 323
>PLN02852 ferredoxin-NADP+ reductase
Probab=27.59 E-value=2.7e+02 Score=26.09 Aligned_cols=50 Identities=10% Similarity=0.101 Sum_probs=34.6
Q ss_pred CCcEEEcCceeeEEEeccCCCCcceEEEEEEEec--------------CCC--eEEecCEEEEcCChh
Q 026885 60 KGGRFHLRWGCREILYDKAANAETYVKGLAMSKA--------------TDK--KVVQADAYVAACDVP 111 (231)
Q Consensus 60 ~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~--------------~~g--~~~~aD~vV~a~p~~ 111 (231)
+|+.+++...-.+|.-+++.+| ++.++++... .+| +++++|.||.++...
T Consensus 288 ~~v~~~f~~sP~ei~~~~~~~~--~v~~l~~~~~~l~~~~~~g~~~~~~tge~~~i~~D~Vi~aIG~~ 353 (491)
T PLN02852 288 RELHFVFFRNPTRFLDSGDGNG--HVAGVKLERTVLEGAAGSGKQVAVGTGEFEDLPCGLVLKSIGYK 353 (491)
T ss_pred ceEEEEccCCCeEEEccCCCCC--cEEEEEEEEeecCCCcccCCcccCCCCCEEEEECCEEEEeecCC
Confidence 5789999999999985321014 7888877520 023 357899999998864
No 324
>KOG2311 consensus NAD/FAD-utilizing protein possibly involved in translation [Translation, ribosomal structure and biogenesis]
Probab=27.56 E-value=85 Score=29.64 Aligned_cols=59 Identities=14% Similarity=0.225 Sum_probs=37.1
Q ss_pred hhHHHHHHHHHHCC-cEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCCh
Q 026885 48 YLSGPIRKYITDKG-GRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDV 110 (231)
Q Consensus 48 ~l~~~l~~~l~~~G-g~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~ 110 (231)
.+-+.|.+.|.+-- -+|+- ..|..|.+.+.++|..++.||++. ||..+.|+.||.++..
T Consensus 125 lYkk~MQkei~st~nL~ire-~~V~dliv~~~~~~~~~~~gV~l~---dgt~v~a~~VilTTGT 184 (679)
T KOG2311|consen 125 LYKKNMQKEISSTPNLEIRE-GAVADLIVEDPDDGHCVVSGVVLV---DGTVVYAESVILTTGT 184 (679)
T ss_pred HHHHHHHHHhccCCcchhhh-hhhhheeeccCCCCceEEEEEEEe---cCcEeccceEEEeecc
Confidence 34455666655433 33433 456666665432332258899986 9999999999988763
No 325
>PLN02507 glutathione reductase
Probab=27.54 E-value=1.7e+02 Score=27.31 Aligned_cols=46 Identities=9% Similarity=0.067 Sum_probs=28.0
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCe--EEecCEEEEcCCh
Q 026885 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKK--VVQADAYVAACDV 110 (231)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~--~~~aD~vV~a~p~ 110 (231)
+.+.++..|+++..+ +++.+..+. ..|.+. +|+ .+.+|++|.|+..
T Consensus 130 ~~~~l~~~gV~~i~g-~a~~vd~~~--------v~V~~~---~g~~~~~~~d~LIIATGs 177 (499)
T PLN02507 130 YKRLLANAGVKLYEG-EGKIVGPNE--------VEVTQL---DGTKLRYTAKHILIATGS 177 (499)
T ss_pred HHHHHHhCCcEEEEE-EEEEecCCE--------EEEEeC---CCcEEEEEcCEEEEecCC
Confidence 344566688888776 455443221 234432 554 5789999988764
No 326
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=26.85 E-value=96 Score=24.38 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=40.1
Q ss_pred ccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC
Q 026885 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (231)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g 96 (231)
+.++.++.+|+++.-.-.+...-+...+. .+-.|++..|.++|.++ +-...... . + ..
T Consensus 18 cTp~aii~lL~~~~~~l~Gk~v~VvGrs~--~VG~Pla~lL~~~~atV------t~~h~~T~--~--------l----~~ 75 (160)
T PF02882_consen 18 CTPLAIIELLEYYGIDLEGKKVVVVGRSN--IVGKPLAMLLLNKGATV------TICHSKTK--N--------L----QE 75 (160)
T ss_dssp HHHHHHHHHHHHTT-STTT-EEEEE-TTT--TTHHHHHHHHHHTT-EE------EEE-TTSS--S--------H----HH
T ss_pred CCHHHHHHHHHhcCCCCCCCEEEEECCcC--CCChHHHHHHHhCCCeE------EeccCCCC--c--------c----cc
Confidence 35556666777644334444545454443 57899999999996654 22221110 0 0 11
Q ss_pred eEEecCEEEEcCChhhH
Q 026885 97 KVVQADAYVAACDVPGI 113 (231)
Q Consensus 97 ~~~~aD~vV~a~p~~~~ 113 (231)
..-.||.||+|+..+.+
T Consensus 76 ~~~~ADIVVsa~G~~~~ 92 (160)
T PF02882_consen 76 ITRRADIVVSAVGKPNL 92 (160)
T ss_dssp HHTTSSEEEE-SSSTT-
T ss_pred eeeeccEEeeeeccccc
Confidence 22359999999987554
No 327
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=26.73 E-value=1.3e+02 Score=26.17 Aligned_cols=79 Identities=11% Similarity=0.153 Sum_probs=46.4
Q ss_pred cccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCC
Q 026885 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (231)
Q Consensus 16 ~~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~ 95 (231)
=+.++.++.+|+++.-.-.+-..-+...+. .+-.|++..|.++|..+ |+.|+-.+... . . + .
T Consensus 134 PcTp~avi~lL~~~~i~l~Gk~vvViGrS~--iVGkPla~lL~~~~~~~--~AtVtvchs~T---~--~-----l----~ 195 (287)
T PRK14181 134 PCTPAGIIELLKYYEIPLHGRHVAIVGRSN--IVGKPLAALLMQKHPDT--NATVTLLHSQS---E--N-----L----T 195 (287)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCc--cchHHHHHHHHhCcCCC--CCEEEEeCCCC---C--C-----H----H
Confidence 346666777777654333344444444443 67899999999885432 45555433211 0 0 1 1
Q ss_pred CeEEecCEEEEcCChhh
Q 026885 96 KKVVQADAYVAACDVPG 112 (231)
Q Consensus 96 g~~~~aD~vV~a~p~~~ 112 (231)
..+-.||.||+|++.+.
T Consensus 196 ~~~~~ADIvV~AvG~p~ 212 (287)
T PRK14181 196 EILKTADIIIAAIGVPL 212 (287)
T ss_pred HHHhhCCEEEEccCCcC
Confidence 22346999999999764
No 328
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=26.28 E-value=1.3e+02 Score=30.88 Aligned_cols=28 Identities=11% Similarity=0.210 Sum_probs=21.5
Q ss_pred hhHHHHHHHHHHCCcEEEcCceeeEEEec
Q 026885 48 YLSGPIRKYITDKGGRFHLRWGCREILYD 76 (231)
Q Consensus 48 ~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~ 76 (231)
.+++.-.+.+++.|++|++|+.| .+.++
T Consensus 590 evL~~die~l~~~GVe~~~gt~V-di~le 617 (1019)
T PRK09853 590 ELIQHDIEFVKAHGVKFEFGCSP-DLTVE 617 (1019)
T ss_pred HHHHHHHHHHHHcCCEEEeCcee-EEEhh
Confidence 45666778899999999999988 34443
No 329
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=26.11 E-value=77 Score=24.97 Aligned_cols=45 Identities=7% Similarity=-0.011 Sum_probs=33.8
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChhh
Q 026885 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVPG 112 (231)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~~ 112 (231)
..-.+.|++.|++|+.+..++++.... . + .+. .+|.||.|-|+..
T Consensus 43 ~~nl~~L~~~g~~V~~~VDat~l~~~~---~--------~----~~~--~FDrIiFNFPH~G 87 (166)
T PF10354_consen 43 EENLEELRELGVTVLHGVDATKLHKHF---R--------L----KNQ--RFDRIIFNFPHVG 87 (166)
T ss_pred HHHHHHHhhcCCccccCCCCCcccccc---c--------c----cCC--cCCEEEEeCCCCC
Confidence 356677799999999999999996543 1 1 222 4899999999754
No 330
>PF01524 Gemini_V1: Geminivirus V1 protein; InterPro: IPR002511 Disruption of the V1 gene in Tomato yellow leaf curl virus (TYLCV) stopped its ability to systemically infect Solanum lycopersicum (Tomato) (Lycopersicon esculentum) plants, suggesting that the V1 gene product is required for successful infection of the host [].; GO: 0019048 virus-host interaction, 0060967 negative regulation of gene silencing by RNA, 0030430 host cell cytoplasm
Probab=25.59 E-value=1.5e+02 Score=20.33 Aligned_cols=53 Identities=9% Similarity=0.053 Sum_probs=27.9
Q ss_pred CchHHHHHcCCCCCCcccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCC
Q 026885 1 MWDPVAYALGFIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKG 61 (231)
Q Consensus 1 ~w~pl~~a~~~~~~~~~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~G 61 (231)
||+|| +|.-|+.+=.--.+-..+++-.- .--|....++-.++.-|...|+.+.
T Consensus 1 MWDPL----lnefP~tvHGfRCMLAiKYlq~~----~~~Y~p~tlG~dlirdLI~vlR~rn 53 (78)
T PF01524_consen 1 MWDPL----LNEFPETVHGFRCMLAIKYLQLV----EKTYSPDTLGYDLIRDLISVLRARN 53 (78)
T ss_pred CCccc----cccCCccccchhHHHHHHHHHHc----ccccCCCCccHHHHHHHHHHHhhhh
Confidence 79998 68888866553333344442211 1122333333345666776666554
No 331
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=25.27 E-value=42 Score=30.73 Aligned_cols=31 Identities=10% Similarity=-0.022 Sum_probs=23.0
Q ss_pred eeCCCCcchhHHHHHHHHHHCCcEEEcCcee
Q 026885 40 MLKGSPDVYLSGPIRKYITDKGGRFHLRWGC 70 (231)
Q Consensus 40 ~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V 70 (231)
++...+...+.+...+.+++.|++|++++.|
T Consensus 176 ip~~~~~~~~~~~~~~~l~~~gv~~~~~~~v 206 (449)
T TIGR01316 176 IPEFRLPKEIVVTEIKTLKKLGVTFRMNFLV 206 (449)
T ss_pred CCCccCCHHHHHHHHHHHHhCCcEEEeCCcc
Confidence 3333344456777788899999999999866
No 332
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=24.08 E-value=1.7e+02 Score=25.36 Aligned_cols=76 Identities=13% Similarity=0.257 Sum_probs=45.9
Q ss_pred cccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCC
Q 026885 16 NISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATD 95 (231)
Q Consensus 16 ~~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~ 95 (231)
=+.++.++.+|+++.-.-.|...-+...+. .+-.|++..|.++|.++ +-.+.... . + .
T Consensus 139 PcTp~aii~lL~~y~i~l~Gk~vvViGrS~--~VGkPla~lL~~~~ATV------t~chs~T~--d--------l----~ 196 (282)
T PRK14180 139 SCTPKGIMTMLREYGIKTEGAYAVVVGASN--VVGKPVSQLLLNAKATV------TTCHRFTT--D--------L----K 196 (282)
T ss_pred CCCHHHHHHHHHHhCCCCCCCEEEEECCCC--cchHHHHHHHHHCCCEE------EEEcCCCC--C--------H----H
Confidence 346667777777654444455555555443 67899999999887554 22221110 0 1 1
Q ss_pred CeEEecCEEEEcCChhhH
Q 026885 96 KKVVQADAYVAACDVPGI 113 (231)
Q Consensus 96 g~~~~aD~vV~a~p~~~~ 113 (231)
..+-.||.||+|++.+.+
T Consensus 197 ~~~k~ADIvIsAvGkp~~ 214 (282)
T PRK14180 197 SHTTKADILIVAVGKPNF 214 (282)
T ss_pred HHhhhcCEEEEccCCcCc
Confidence 123469999999997654
No 333
>PRK04966 hypothetical protein; Provisional
Probab=23.87 E-value=2.4e+02 Score=19.12 Aligned_cols=62 Identities=6% Similarity=0.052 Sum_probs=42.1
Q ss_pred CCCCCcccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEE
Q 026885 11 FIDCDNISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREIL 74 (231)
Q Consensus 11 ~~~~~~~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~ 74 (231)
-+|.++++.-.+-+++..|.. ++|++.|--..++.+. ++.+.+.|++--+-|.++..=+.+.
T Consensus 2 iIP~~~L~~eTL~nLIeefv~-ReGTdyG~~E~sl~~k-v~qv~~qL~~G~~viv~se~~ESv~ 63 (72)
T PRK04966 2 IIPWQDLAPETLENLIESFVL-REGTDYGEHERSLEQK-VADVKRQLQSGEAVLVWSELHETVN 63 (72)
T ss_pred cCChHhCCHHHHHHHHHHHHh-ccCccCCcccccHHHH-HHHHHHHHHcCCEEEEECCCCCeee
Confidence 367889999999999999876 3677777666666543 4556666665445666655444443
No 334
>PF14542 Acetyltransf_CG: GCN5-related N-acetyl-transferase; PDB: 2H5M_A 2Q44_A 1XMT_A 2Q4Y_A 2IL4_A 2EVN_A 1R57_A.
Probab=23.73 E-value=68 Score=21.75 Aligned_cols=27 Identities=11% Similarity=0.044 Sum_probs=22.2
Q ss_pred CCcchhHHHHHHHHHHCCcEEEcCcee
Q 026885 44 SPDVYLSGPIRKYITDKGGRFHLRWGC 70 (231)
Q Consensus 44 ~~~~~l~~~l~~~l~~~Gg~i~~~~~V 70 (231)
|++..|++.+.++++++|-+|...|+-
T Consensus 38 Gia~~L~~~~l~~a~~~~~kv~p~C~y 64 (78)
T PF14542_consen 38 GIAKKLVEAALDYARENGLKVVPTCSY 64 (78)
T ss_dssp THHHHHHHHHHHHHHHTT-EEEETSHH
T ss_pred cHHHHHHHHHHHHHHHCCCEEEEECHH
Confidence 566789999999999999999887753
No 335
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=23.52 E-value=1.6e+02 Score=25.54 Aligned_cols=74 Identities=12% Similarity=0.152 Sum_probs=44.1
Q ss_pred ccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC
Q 026885 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (231)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g 96 (231)
+.++.++.+|+++.-.-.+....+...+. .+-.|++..|.++|.++.. ..... . . + ..
T Consensus 140 cTp~aii~lL~~~~i~l~Gk~vvViGrs~--iVGkPla~lL~~~~atVt~------~hs~t---~-----~--l----~~ 197 (285)
T PRK14189 140 CTPYGVMKMLESIGIPLRGAHAVVIGRSN--IVGKPMAMLLLQAGATVTI------CHSKT---R-----D--L----AA 197 (285)
T ss_pred CCHHHHHHHHHHcCCCCCCCEEEEECCCC--ccHHHHHHHHHHCCCEEEE------ecCCC---C-----C--H----HH
Confidence 45666677777654344455555555443 5678999999988876643 11110 0 0 1 12
Q ss_pred eEEecCEEEEcCChhh
Q 026885 97 KVVQADAYVAACDVPG 112 (231)
Q Consensus 97 ~~~~aD~vV~a~p~~~ 112 (231)
..-.||.||++++.+.
T Consensus 198 ~~~~ADIVV~avG~~~ 213 (285)
T PRK14189 198 HTRQADIVVAAVGKRN 213 (285)
T ss_pred HhhhCCEEEEcCCCcC
Confidence 2336999999999543
No 336
>PRK11749 dihydropyrimidine dehydrogenase subunit A; Provisional
Probab=23.11 E-value=80 Score=28.87 Aligned_cols=26 Identities=4% Similarity=-0.133 Sum_probs=21.2
Q ss_pred cchhHHHHHHHHHHCCcEEEcCceee
Q 026885 46 DVYLSGPIRKYITDKGGRFHLRWGCR 71 (231)
Q Consensus 46 ~~~l~~~l~~~l~~~Gg~i~~~~~V~ 71 (231)
...+.+...+.+++.|+++++++.|.
T Consensus 189 ~~~~~~~~~~~l~~~gv~~~~~~~v~ 214 (457)
T PRK11749 189 PKDIVDREVERLLKLGVEIRTNTEVG 214 (457)
T ss_pred CHHHHHHHHHHHHHcCCEEEeCCEEC
Confidence 33567778888999999999999873
No 337
>PRK06327 dihydrolipoamide dehydrogenase; Validated
Probab=22.48 E-value=2.5e+02 Score=25.74 Aligned_cols=53 Identities=13% Similarity=0.065 Sum_probs=31.9
Q ss_pred HHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCCeEEecCEEEEcCChh
Q 026885 51 GPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDKKVVQADAYVAACDVP 111 (231)
Q Consensus 51 ~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g~~~~aD~vV~a~p~~ 111 (231)
+...+.++..|+++..+. ++.+..+++ + ..|.+.. .+++++++|.+|.|+...
T Consensus 104 ~~~~~~~~~~~v~~~~g~-~~~~~~~~~--~----~~v~v~~-~~~~~~~~d~lViATGs~ 156 (475)
T PRK06327 104 GGIEGLFKKNKITVLKGR-GSFVGKTDA--G----YEIKVTG-EDETVITAKHVIIATGSE 156 (475)
T ss_pred HHHHHHHHhCCCEEEEEE-EEEecCCCC--C----CEEEEec-CCCeEEEeCEEEEeCCCC
Confidence 345556677899988765 344443331 2 2344421 235689999999998753
No 338
>PRK12831 putative oxidoreductase; Provisional
Probab=22.11 E-value=86 Score=28.90 Aligned_cols=23 Identities=9% Similarity=-0.058 Sum_probs=19.8
Q ss_pred hHHHHHHHHHHCCcEEEcCceee
Q 026885 49 LSGPIRKYITDKGGRFHLRWGCR 71 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~~V~ 71 (231)
+.+...+.+++.|++|++|+.|.
T Consensus 193 ~~~~~~~~~~~~gv~i~~~~~v~ 215 (464)
T PRK12831 193 VVKKEIENIKKLGVKIETNVVVG 215 (464)
T ss_pred HHHHHHHHHHHcCCEEEcCCEEC
Confidence 67777889999999999999773
No 339
>PRK06467 dihydrolipoamide dehydrogenase; Reviewed
Probab=21.95 E-value=2.2e+02 Score=26.14 Aligned_cols=46 Identities=11% Similarity=0.006 Sum_probs=28.1
Q ss_pred HHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC--eEEecCEEEEcCCh
Q 026885 53 IRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK--KVVQADAYVAACDV 110 (231)
Q Consensus 53 l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g--~~~~aD~vV~a~p~ 110 (231)
..+.+++.|++++.++.. - .+. + -..|.. .+| +++.+|++|.|+..
T Consensus 99 ~~~~~~~~gV~~~~g~a~-~--~~~---~---~v~v~~---~~g~~~~~~~d~lViATGs 146 (471)
T PRK06467 99 LAGMAKGRKVTVVNGLGK-F--TGG---N---TLEVTG---EDGKTTVIEFDNAIIAAGS 146 (471)
T ss_pred HHHHHHhCCCEEEEEEEE-E--ccC---C---EEEEec---CCCceEEEEcCEEEEeCCC
Confidence 345567789999987533 1 232 2 223332 245 47889999998764
No 340
>PF15647 Tox-REase-3: Restriction endonuclease fold toxin 3
Probab=21.46 E-value=94 Score=22.52 Aligned_cols=20 Identities=20% Similarity=0.504 Sum_probs=17.4
Q ss_pred hHHHHHHHHHHCCcEEEcCc
Q 026885 49 LSGPIRKYITDKGGRFHLRW 68 (231)
Q Consensus 49 l~~~l~~~l~~~Gg~i~~~~ 68 (231)
..+.+.+++++.||+|+.++
T Consensus 88 v~~kv~eY~e~~G~~Vii~t 107 (109)
T PF15647_consen 88 VHDKVKEYIERYGGKVIIDT 107 (109)
T ss_pred ccHHHHHHHHHcCcEEEecC
Confidence 46789999999999998875
No 341
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=20.58 E-value=2.1e+02 Score=24.78 Aligned_cols=74 Identities=12% Similarity=0.154 Sum_probs=42.2
Q ss_pred ccHHHHHHHHHHHHhccccceeeeeCCCCcchhHHHHHHHHHHCCcEEEcCceeeEEEeccCCCCcceEEEEEEEecCCC
Q 026885 17 ISARCMLTIFALFATKTEASLLRMLKGSPDVYLSGPIRKYITDKGGRFHLRWGCREILYDKAANAETYVKGLAMSKATDK 96 (231)
Q Consensus 17 ~Sa~~~~~~l~~~~~~~~~~~~g~~~g~~~~~l~~~l~~~l~~~Gg~i~~~~~V~~i~~~~~~~~~~~v~~v~~~~~~~g 96 (231)
+.++.++.+++++.-.-.+...-+...+- .+-.|++..|..+|.++ +-...... . + ..
T Consensus 146 cTp~av~~ll~~~~i~l~Gk~vvViGrs~--iVGkPla~lL~~~~atV------tv~hs~T~--~--------l----~~ 203 (287)
T PRK14176 146 CTPHGVIRALEEYGVDIEGKNAVIVGHSN--VVGKPMAAMLLNRNATV------SVCHVFTD--D--------L----KK 203 (287)
T ss_pred CcHHHHHHHHHHcCCCCCCCEEEEECCCc--ccHHHHHHHHHHCCCEE------EEEeccCC--C--------H----HH
Confidence 35556666666543333444444444333 57889999999888655 22211110 0 1 12
Q ss_pred eEEecCEEEEcCChhh
Q 026885 97 KVVQADAYVAACDVPG 112 (231)
Q Consensus 97 ~~~~aD~vV~a~p~~~ 112 (231)
.+-.||.||+|+..+.
T Consensus 204 ~~~~ADIvv~AvG~p~ 219 (287)
T PRK14176 204 YTLDADILVVATGVKH 219 (287)
T ss_pred HHhhCCEEEEccCCcc
Confidence 2346999999988654
Done!