BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026886
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2F7F|A Chain A, Crystal Structure Of Enterococcus Faecalis Putative
Nicotinate Phosphoribosyltransferase, New York
Structural Genomics Consortium
Length = 494
Score = 97.8 bits (242), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 67/184 (36%), Positives = 98/184 (53%), Gaps = 23/184 (12%)
Query: 1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
+++GVP+ VA + D +G+R+DSGD+AY+S + + ++ F + I
Sbjct: 238 LKAGVPSAIRVAREMGD-KINFLGVRIDSGDMAYIS-------KRVREQLDEAGFTEAKI 289
Query: 61 TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEI-----NKQPRIK 115
ASNDL+E T+ L Q ++D +G+GT L+T Y Q ALG VFKLV I + IK
Sbjct: 290 YASNDLDENTILNLKMQKSKIDVWGVGTKLITAYDQPALGAVFKLVSIEGEDGQMKDTIK 349
Query: 116 LSEDVSKVSIPCKKRSYRLYGK-----EGYPLVDIMTGENEPPPKVGERILCRHPFNESK 170
LS + KV+ P KK+ +R+ K EG D +T NE P+ E I HP +
Sbjct: 350 LSSNAEKVTTPGKKQVWRITRKSDKKSEG----DYVTLWNE-DPRQEEEIYMFHPVHTFI 404
Query: 171 RAYV 174
YV
Sbjct: 405 NKYV 408
>pdb|1VLP|A Chain A, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|B Chain B, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|C Chain C, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
pdb|1VLP|D Chain D, Crystal Structure Of A Putative Nicotinate
Phosphoribosyltransferase (Yor209c, Npt1) From
Saccharomyces Cerevisiae At 1.75 A Resolution
Length = 441
Score = 40.0 bits (92), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 52/111 (46%), Gaps = 15/111 (13%)
Query: 23 VGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEE---TLDALNKQGH 79
VG+R DSGD + + + + K +P F K+ I S+ LN E T K+
Sbjct: 303 VGVRQDSGDPVEYTKKISHHYHDVLK---LPKFSKI-ICYSDSLNVEKAITYSHAAKENG 358
Query: 80 EVDAFGIGTYLVTCYAQAA--------LGCVFKLVEINKQPRIKLSEDVSK 122
+ FGIGT + + + L V KL+E+N IK+S+++ K
Sbjct: 359 XLATFGIGTNFTNDFRKKSEPQVKSEPLNIVIKLLEVNGNHAIKISDNLGK 409
>pdb|3MPQ|A Chain A, I204r1 Mutant Of Leut
Length = 507
Score = 30.4 bits (67), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 101 CVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKE---GYPLVDIMTGENEPPPKVG 157
+F L+ N+ +I V + IP Y +Y + G+ + ++ EPPP
Sbjct: 76 AIFYLLWRNRFAKIL---GVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT 132
Query: 158 ERILCRHPFNESKRAYV-VPQKVEELLKCYWPGSSGGDYPMVFGDVQFLSTLNGPFISSL 216
+ PF E +Y+ VP+ E +LK P +F + FL T+ FI+
Sbjct: 133 DPDSILRPFKEFLYSYIGVPKGDEPILK-----------PSLFAYIVFLITM---FINVS 178
Query: 217 FLVRPMSKPV 226
L+R +SK +
Sbjct: 179 ILIRGISKGI 188
>pdb|3GJD|A Chain A, Crystal Structure Of Leut With Bound Og
pdb|3GWU|A Chain A, Leucine Transporter Leut In Complex With Sertraline
pdb|3GWV|A Chain A, Leucine Transporter Leut In Complex With R-Fluoxetine
pdb|3GWW|A Chain A, Leucine Transporter Leut In Complex With S-fluoxetine
Length = 515
Score = 30.4 bits (67), Expect = 0.80, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 101 CVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKE---GYPLVDIMTGENEPPPKVG 157
+F L+ N+ +I V + IP Y +Y + G+ + ++ EPPP
Sbjct: 79 AIFYLLWRNRFAKIL---GVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT 135
Query: 158 ERILCRHPFNESKRAYV-VPQKVEELLKCYWPGSSGGDYPMVFGDVQFLSTLNGPFISSL 216
+ PF E +Y+ VP+ E +LK P +F + FL T+ FI+
Sbjct: 136 DPDSILRPFKEFLYSYIGVPKGDEPILK-----------PSLFAYIVFLITM---FINVS 181
Query: 217 FLVRPMSKPV 226
L+R +SK +
Sbjct: 182 ILIRGISKGI 191
>pdb|2QJU|A Chain A, Crystal Structure Of An Nss Homolog With Bound
Antidepressant
Length = 511
Score = 30.4 bits (67), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 101 CVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKE---GYPLVDIMTGENEPPPKVG 157
+F L+ N+ +I V + IP Y +Y + G+ + ++ EPPP
Sbjct: 75 AIFYLLWRNRFAKIL---GVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT 131
Query: 158 ERILCRHPFNESKRAYV-VPQKVEELLKCYWPGSSGGDYPMVFGDVQFLSTLNGPFISSL 216
+ PF E +Y+ VP+ E +LK P +F + FL T+ FI+
Sbjct: 132 DPDSILRPFKEFLYSYIGVPKGDEPILK-----------PSLFAYIVFLITM---FINVS 177
Query: 217 FLVRPMSKPV 226
L+R +SK +
Sbjct: 178 ILIRGISKGI 187
>pdb|3GJC|A Chain A, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
pdb|3GJC|B Chain B, Crystal Structure Of The E290s Mutant Of Leut With Bound
Og
Length = 513
Score = 30.4 bits (67), Expect = 0.83, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 101 CVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKE---GYPLVDIMTGENEPPPKVG 157
+F L+ N+ +I V + IP Y +Y + G+ + ++ EPPP
Sbjct: 79 AIFYLLWRNRFAKIL---GVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT 135
Query: 158 ERILCRHPFNESKRAYV-VPQKVEELLKCYWPGSSGGDYPMVFGDVQFLSTLNGPFISSL 216
+ PF E +Y+ VP+ E +LK P +F + FL T+ FI+
Sbjct: 136 DPDSILRPFKEFLYSYIGVPKGDEPILK-----------PSLFAYIVFLITM---FINVS 181
Query: 217 FLVRPMSKPV 226
L+R +SK +
Sbjct: 182 ILIRGISKGI 191
>pdb|4FXZ|A Chain A, Crystal Structure Of Leut-F253a Bound To L-Leucine From
Lipid Bicelles
pdb|4FY0|A Chain A, Crystal Structure Of Leut-F253a Bound To
L-Selenomethionine From Lipid Bicelles
Length = 513
Score = 30.4 bits (67), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 101 CVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKE---GYPLVDIMTGENEPPPKVG 157
+F L+ N+ +I V + IP Y +Y + G+ + ++ EPPP
Sbjct: 79 AIFYLLWRNRFAKIL---GVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT 135
Query: 158 ERILCRHPFNESKRAYV-VPQKVEELLKCYWPGSSGGDYPMVFGDVQFLSTLNGPFISSL 216
+ PF E +Y+ VP+ E +LK P +F + FL T+ FI+
Sbjct: 136 DPDSILRPFKEFLYSYIGVPKGDEPILK-----------PSLFAYIVFLITM---FINVS 181
Query: 217 FLVRPMSKPV 226
L+R +SK +
Sbjct: 182 ILIRGISKGI 191
>pdb|3QS6|A Chain A, Crystal Structure Of Leut Mutant F259v,I359q Bound To
Sodium And L- Tryptophan
Length = 519
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 101 CVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKE---GYPLVDIMTGENEPPPKVG 157
+F L+ N+ +I V + IP Y +Y + G+ + ++ EPPP
Sbjct: 79 AIFYLLWRNRFAKIL---GVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT 135
Query: 158 ERILCRHPFNESKRAYV-VPQKVEELLKCYWPGSSGGDYPMVFGDVQFLSTLNGPFISSL 216
+ PF E +Y+ VP+ E +LK P +F + FL T+ FI+
Sbjct: 136 DPDSILRPFKEFLYSYIGVPKGDEPILK-----------PSLFAYIVFLITM---FINVS 181
Query: 217 FLVRPMSKPV 226
L+R +SK +
Sbjct: 182 ILIRGISKGI 191
>pdb|3QS5|A Chain A, Crystal Structure Of Leut Mutant I359q Bound To Sodium And
L- Tryptophan
Length = 519
Score = 30.4 bits (67), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 101 CVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKE---GYPLVDIMTGENEPPPKVG 157
+F L+ N+ +I V + IP Y +Y + G+ + ++ EPPP
Sbjct: 79 AIFYLLWRNRFAKIL---GVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT 135
Query: 158 ERILCRHPFNESKRAYV-VPQKVEELLKCYWPGSSGGDYPMVFGDVQFLSTLNGPFISSL 216
+ PF E +Y+ VP+ E +LK P +F + FL T+ FI+
Sbjct: 136 DPDSILRPFKEFLYSYIGVPKGDEPILK-----------PSLFAYIVFLITM---FINVS 181
Query: 217 FLVRPMSKPV 226
L+R +SK +
Sbjct: 182 ILIRGISKGI 191
>pdb|2A65|A Chain A, Crystal Structure Of Leutaa, A Bacterial Homolog Of
Na+/cl--dependent Neurotransmitter Transporters
pdb|3F3C|A Chain A, Crystal Structure Of Leut Bound To
4-Fluoro-L-Phenylalanine And Sodium
pdb|3F3E|A Chain A, Crystal Structure Of Leut Bound To L-Leucine (30 Mm) And
Sodium
pdb|3F4I|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine And
Sodium
pdb|3F48|A Chain A, Crystal Structure Of Leut Bound To L-Alanine And Sodium
pdb|3F4J|A Chain A, Crystal Structure Of Leut Bound To Glycine And Sodium
pdb|2Q72|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Imipramine
pdb|2Q6H|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium, And Clomipramine
pdb|3USG|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group C2 From Lipid Bicelles
pdb|3USI|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USI|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P2 From Lipid Bicelles
pdb|3USJ|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USJ|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|A Chain A, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|B Chain B, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|C Chain C, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USK|D Chain D, Crystal Structure Of Leut Bound To L-Leucine In Space
Group P21 From Lipid Bicelles
pdb|3USL|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles
pdb|3USM|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group C2 From Lipid Bicelles (Collected At 1.2 A)
pdb|3USO|A Chain A, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USO|B Chain B, Crystal Structure Of Leut Bound To L-Selenomethionine In
Space Group P21212 From Lipid Bicelles
pdb|3USP|A Chain A, Crystal Structure Of Leut In Heptyl-Beta-D-Selenoglucoside
pdb|2QB4|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-Leucine, Sodium And Desipramine
pdb|2QEI|A Chain A, Crystal Structure Analysis Of Leut Complexed With
L-alanine, Sodium, And Clomipramine
Length = 519
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 101 CVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKE---GYPLVDIMTGENEPPPKVG 157
+F L+ N+ +I V + IP Y +Y + G+ + ++ EPPP
Sbjct: 79 AIFYLLWRNRFAKIL---GVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT 135
Query: 158 ERILCRHPFNESKRAYV-VPQKVEELLKCYWPGSSGGDYPMVFGDVQFLSTLNGPFISSL 216
+ PF E +Y+ VP+ E +LK P +F + FL T+ FI+
Sbjct: 136 DPDSILRPFKEFLYSYIGVPKGDEPILK-----------PSLFAYIVFLITM---FINVS 181
Query: 217 FLVRPMSKPV 226
L+R +SK +
Sbjct: 182 ILIRGISKGI 191
>pdb|3TU0|A Chain A, Crystal Structure Of T355v, S354a, K288a Leut Mutant In
Complex With Alanine And Sodium
Length = 519
Score = 30.4 bits (67), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 101 CVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKE---GYPLVDIMTGENEPPPKVG 157
+F L+ N+ +I V + IP Y +Y + G+ + ++ EPPP
Sbjct: 79 AIFYLLWRNRFAKIL---GVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT 135
Query: 158 ERILCRHPFNESKRAYV-VPQKVEELLKCYWPGSSGGDYPMVFGDVQFLSTLNGPFISSL 216
+ PF E +Y+ VP+ E +LK P +F + FL T+ FI+
Sbjct: 136 DPDSILRPFKEFLYSYIGVPKGDEPILK-----------PSLFAYIVFLITM---FINVS 181
Query: 217 FLVRPMSKPV 226
L+R +SK +
Sbjct: 182 ILIRGISKGI 191
>pdb|3QS4|A Chain A, Crystal Structure Of Leut Mutant F259v Bound To Sodium And
L- Tryptophan
Length = 519
Score = 30.4 bits (67), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 101 CVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKE---GYPLVDIMTGENEPPPKVG 157
+F L+ N+ +I V + IP Y +Y + G+ + ++ EPPP
Sbjct: 79 AIFYLLWRNRFAKIL---GVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT 135
Query: 158 ERILCRHPFNESKRAYV-VPQKVEELLKCYWPGSSGGDYPMVFGDVQFLSTLNGPFISSL 216
+ PF E +Y+ VP+ E +LK P +F + FL T+ FI+
Sbjct: 136 DPDSILRPFKEFLYSYIGVPKGDEPILK-----------PSLFAYIVFLITM---FINVS 181
Query: 217 FLVRPMSKPV 226
L+R +SK +
Sbjct: 182 ILIRGISKGI 191
>pdb|3TT3|A Chain A, Crystal Structure Of Leut In The Inward-Open Conformation
In Complex With Fab
Length = 519
Score = 30.4 bits (67), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 101 CVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKE---GYPLVDIMTGENEPPPKVG 157
+F L+ N+ +I V + IP Y +Y + G+ + ++ EPPP
Sbjct: 79 AIFYLLWRNRFAKIL---GVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT 135
Query: 158 ERILCRHPFNESKRAYV-VPQKVEELLKCYWPGSSGGDYPMVFGDVQFLSTLNGPFISSL 216
+ PF E +Y+ VP+ E +LK P +F + FL T+ FI+
Sbjct: 136 DPDSILRPFKEFLYSYIGVPKGDEPILK-----------PSLFAYIVFLITM---FINVS 181
Query: 217 FLVRPMSKPV 226
L+R +SK +
Sbjct: 182 ILIRGISKGI 191
>pdb|3TT1|A Chain A, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
pdb|3TT1|B Chain B, Crystal Structure Of Leut In The Outward-Open Conformation
In Complex With Fab
Length = 519
Score = 30.0 bits (66), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 34/130 (26%), Positives = 57/130 (43%), Gaps = 21/130 (16%)
Query: 101 CVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKE---GYPLVDIMTGENEPPPKVG 157
+F L+ N+ +I V + IP Y +Y + G+ + ++ EPPP
Sbjct: 79 AIFYLLWRNRFAKIL---GVFGLWIPLVVAIYFVYIESWTLGFAIKFLVGLVPEPPPNAT 135
Query: 158 ERILCRHPFNESKRAYV-VPQKVEELLKCYWPGSSGGDYPMVFGDVQFLSTLNGPFISSL 216
+ PF E +Y+ VP+ E +LK P +F + FL T+ FI+
Sbjct: 136 DPDSILRPFKEFLYSYIGVPKGDEPILK-----------PSLFAYIVFLITM---FINVS 181
Query: 217 FLVRPMSKPV 226
L+R +SK +
Sbjct: 182 ILIRGISKGI 191
>pdb|1CHK|A Chain A, Streptomyces N174 Chitosanase Ph5.5 298k
pdb|1CHK|B Chain B, Streptomyces N174 Chitosanase Ph5.5 298k
Length = 238
Score = 28.5 bits (62), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 4/87 (4%)
Query: 71 LDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKR 130
L AL K G+GT +A AA VF+ + +++ R+ VS+ K
Sbjct: 78 LPALKKVNGSASHSGLGTPFTKDWATAAKDTVFQQAQNDERDRVYFDPAVSQ----AKAD 133
Query: 131 SYRLYGKEGYPLVDIMTGENEPPPKVG 157
R G+ Y +M G P G
Sbjct: 134 GLRALGQFAYYDAIVMHGPGNDPTSFG 160
>pdb|1OLR|A Chain A, The Humicola Grisea Cel12a Enzyme Structure At 1.2 A
Resolution
pdb|1UU4|A Chain A, X-Ray Crystal Structure Of The Catalytic Domain Of
Humicola Grisea Cel12a In Complex With Cellobiose
pdb|1UU5|A Chain A, X-Ray Crystal Structure Of The Catalytic Domain Of
Humicola Grisea Cel12a Soaked With Cellotetraose
pdb|1UU6|A Chain A, X-Ray Crystal Structure Of The Catalytic Domain Of
Humicola Grisea Cel12a In Complex With A Soaked
Cellopentaose
pdb|1W2U|A Chain A, X-Ray Crystal Structure Of The Catalytic Domain Of
Humicola Grisea Cel12a In Complex With A Soaked Thio
Cellotetraose
Length = 224
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 12/32 (37%), Positives = 18/32 (56%)
Query: 29 SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSI 60
SGD+ SC+ + FF +E+ G P E+ I
Sbjct: 167 SGDIRDFSCDIKDFFNYLERNHGYPAREQNLI 198
>pdb|3OC9|A Chain A, Crystal Structure Of Putative Udp-N-Acetylglucosamine
Pyrophosphorylase From Entamoeba Histolytica
Length = 405
Score = 28.1 bits (61), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 19/36 (52%)
Query: 67 NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCV 102
NEET++ +N E FG+ + + C+ Q L V
Sbjct: 101 NEETIEEINNYFKEHQYFGLSSEQIHCFPQGMLPVV 136
>pdb|3OS4|A Chain A, The Crystal Structure Of Nicotinate
Phosphoribosyltransferase From Yersinia Pestis
pdb|3OS4|B Chain B, The Crystal Structure Of Nicotinate
Phosphoribosyltransferase From Yersinia Pestis
Length = 407
Score = 27.3 bits (59), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 48/99 (48%), Gaps = 10/99 (10%)
Query: 24 GIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVD- 82
G+R DSGD +A + ++ G+ D K + S++L+ E L + ++
Sbjct: 280 GLRHDSGDPIEWGEKAIAHY----EKLGI-DPXKKVLVFSDNLDLEKALFLYRHFYQRIK 334
Query: 83 -AFGIGTYLVTCYAQAA--LGCVFKLVEINKQPRIKLSE 118
FGIGT L TC L V KLVE N +P KLS+
Sbjct: 335 LVFGIGTRL-TCDIPDVKPLNIVIKLVECNDKPVAKLSD 372
>pdb|3MPN|A Chain A, F177r1 Mutant Of Leut
Length = 507
Score = 26.9 bits (58), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 33/130 (25%), Positives = 56/130 (43%), Gaps = 21/130 (16%)
Query: 101 CVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKE---GYPLVDIMTGENEPPPKVG 157
+F L+ N+ +I V + IP Y +Y + G+ + ++ EPPP
Sbjct: 75 AIFYLLWRNRFAKIL---GVFGLWIPLVVAIYYVYIESWTLGFAIKFLVGLVPEPPPNAT 131
Query: 158 ERILCRHPFNESKRAYV-VPQKVEELLKCYWPGSSGGDYPMVFGDVQFLSTLNGPFISSL 216
+ PF E +Y+ VP+ E +LK P +F + FL T+ I+
Sbjct: 132 DPDSILRPFKEFLYSYIGVPKGDEPILK-----------PSLFAYIVFLITMC---INVS 177
Query: 217 FLVRPMSKPV 226
L+R +SK +
Sbjct: 178 ILIRGISKGI 187
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,081,895
Number of Sequences: 62578
Number of extensions: 298742
Number of successful extensions: 680
Number of sequences better than 100.0: 21
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 675
Number of HSP's gapped (non-prelim): 21
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)