Query 026886
Match_columns 231
No_of_seqs 193 out of 1107
Neff 4.9
Searched_HMMs 46136
Date Fri Mar 29 14:06:16 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026886.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026886hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02885 nicotinate phosphorib 100.0 2E-65 4.2E-70 496.5 21.6 229 1-229 292-524 (545)
2 PRK09243 nicotinate phosphorib 100.0 2.5E-53 5.3E-58 406.1 18.7 217 2-229 239-461 (464)
3 TIGR01513 NAPRTase_put putativ 100.0 5.6E-52 1.2E-56 394.9 20.0 209 2-229 230-440 (443)
4 PRK12484 nicotinate phosphorib 100.0 7.9E-48 1.7E-52 366.5 18.8 193 4-229 234-428 (443)
5 KOG2511 Nicotinic acid phospho 100.0 7.7E-37 1.7E-41 281.2 8.1 169 2-190 252-420 (420)
6 cd01401 PncB_like Nicotinate p 100.0 4.3E-33 9.3E-38 261.0 13.2 112 4-124 258-377 (377)
7 COG1488 PncB Nicotinic acid ph 100.0 8.8E-33 1.9E-37 260.9 12.1 159 2-206 246-405 (405)
8 PRK05321 nicotinate phosphorib 100.0 2.8E-32 6E-37 257.2 13.6 120 5-131 262-384 (400)
9 TIGR01514 NAPRTase nicotinate 100.0 9.5E-32 2.1E-36 253.1 13.4 114 4-125 261-378 (394)
10 PRK09198 putative nicotinate p 100.0 5.2E-30 1.1E-34 245.4 17.3 170 4-207 270-461 (463)
11 PF04095 NAPRTase: Nicotinate 100.0 2.9E-31 6.3E-36 235.2 6.3 131 2-136 94-242 (245)
12 PHA02594 nadV nicotinamide pho 100.0 2.5E-29 5.4E-34 240.9 16.3 175 4-207 276-468 (470)
13 cd01570 NAPRTase_A Nicotinate 99.9 3.4E-27 7.4E-32 217.2 11.5 98 2-106 230-327 (327)
14 PRK07188 nicotinate phosphorib 99.9 1.6E-24 3.5E-29 201.7 13.1 102 3-118 214-337 (352)
15 cd01569 PBEF_like pre-B-cell c 99.9 5.1E-22 1.1E-26 187.8 12.5 109 4-116 268-395 (407)
16 cd01567 NAPRTase_PncB Nicotina 99.8 4.1E-21 8.9E-26 176.9 10.6 93 4-104 247-343 (343)
17 PRK08662 nicotinate phosphorib 99.8 5.9E-19 1.3E-23 163.9 12.5 112 4-131 213-329 (343)
18 cd01571 NAPRTase_B Nicotinate 99.7 5.8E-17 1.2E-21 148.1 13.0 100 4-118 197-301 (302)
19 cd00516 PRTase_typeII Phosphor 99.3 9.7E-12 2.1E-16 111.0 8.9 83 5-104 194-281 (281)
20 PF01729 QRPTase_C: Quinolinat 97.9 2.1E-05 4.5E-10 67.0 6.1 70 21-104 100-169 (169)
21 PRK08385 nicotinate-nucleotide 97.3 0.0022 4.7E-08 58.8 10.2 75 20-107 201-276 (278)
22 PRK05848 nicotinate-nucleotide 97.1 0.0037 8.1E-08 57.1 9.2 70 22-105 203-272 (273)
23 PRK07896 nicotinate-nucleotide 96.5 0.012 2.6E-07 54.3 8.2 72 19-104 217-288 (289)
24 cd01573 modD_like ModD; Quinol 96.2 0.033 7.1E-07 50.7 9.1 69 22-105 204-272 (272)
25 PRK05742 nicotinate-nucleotide 96.1 0.042 9.1E-07 50.4 9.3 45 56-105 232-276 (277)
26 PRK07428 nicotinate-nucleotide 95.8 0.08 1.7E-06 48.8 9.8 73 20-106 215-287 (288)
27 PRK09016 quinolinate phosphori 95.8 0.057 1.2E-06 50.1 8.9 69 20-105 227-295 (296)
28 PRK06106 nicotinate-nucleotide 95.6 0.067 1.4E-06 49.3 8.4 68 20-104 213-280 (281)
29 TIGR00078 nadC nicotinate-nucl 94.5 0.22 4.7E-06 45.3 8.5 67 22-105 199-265 (265)
30 cd01568 QPRTase_NadC Quinolina 93.4 0.36 7.8E-06 43.8 7.7 67 22-103 202-268 (269)
31 cd00452 KDPG_aldolase KDPG and 92.8 0.44 9.6E-06 40.4 7.0 73 5-92 104-176 (190)
32 cd01572 QPRTase Quinolinate ph 92.5 0.61 1.3E-05 42.4 8.0 42 57-103 226-267 (268)
33 PRK06552 keto-hydroxyglutarate 91.7 0.72 1.6E-05 40.6 7.2 68 9-92 120-188 (213)
34 PRK06096 molybdenum transport 90.9 2.8 6E-05 38.8 10.5 72 22-108 210-281 (284)
35 TIGR01182 eda Entner-Doudoroff 90.8 0.45 9.8E-06 41.9 5.1 37 54-92 145-181 (204)
36 PRK06978 nicotinate-nucleotide 90.3 2.2 4.7E-05 39.7 9.3 70 21-107 225-294 (294)
37 TIGR03128 RuMP_HxlA 3-hexulose 89.7 1.3 2.9E-05 37.4 6.9 36 57-94 158-193 (206)
38 PRK08072 nicotinate-nucleotide 89.5 2.6 5.7E-05 38.7 9.1 44 57-105 232-275 (277)
39 PRK07114 keto-hydroxyglutarate 89.2 0.57 1.2E-05 41.7 4.5 37 54-92 155-193 (222)
40 COG0157 NadC Nicotinate-nucleo 89.1 4.4 9.6E-05 37.6 10.3 47 56-107 233-279 (280)
41 cd04726 KGPDC_HPS 3-Keto-L-gul 88.9 0.91 2E-05 38.1 5.3 37 56-94 157-193 (202)
42 TIGR00640 acid_CoA_mut_C methy 88.8 3 6.4E-05 34.0 8.0 68 17-92 51-118 (132)
43 PRK06543 nicotinate-nucleotide 88.6 4 8.6E-05 37.7 9.6 68 21-105 213-280 (281)
44 PRK07807 inosine 5-monophospha 88.5 0.51 1.1E-05 46.4 3.9 132 7-152 227-368 (479)
45 PRK07455 keto-hydroxyglutarate 88.2 1.1 2.3E-05 38.5 5.3 37 54-92 149-185 (187)
46 PF01081 Aldolase: KDPG and KH 87.3 0.56 1.2E-05 41.0 3.1 38 54-93 145-182 (196)
47 cd02071 MM_CoA_mut_B12_BD meth 87.1 4.4 9.6E-05 32.0 7.9 65 19-91 50-114 (122)
48 TIGR01334 modD putative molybd 86.7 6.4 0.00014 36.3 9.8 67 22-103 209-275 (277)
49 PLN02716 nicotinate-nucleotide 86.7 8 0.00017 36.3 10.5 68 21-105 229-305 (308)
50 PRK05718 keto-hydroxyglutarate 85.8 2.9 6.4E-05 36.8 6.8 62 15-92 124-188 (212)
51 TIGR01305 GMP_reduct_1 guanosi 85.7 2.1 4.5E-05 40.7 6.2 131 7-152 107-250 (343)
52 cd04729 NanE N-acetylmannosami 85.4 1.9 4.1E-05 37.2 5.4 36 57-94 177-213 (219)
53 TIGR01303 IMP_DH_rel_1 IMP deh 85.2 1.7 3.6E-05 42.8 5.5 131 7-152 225-366 (475)
54 PRK05096 guanosine 5'-monophos 84.5 3.7 8E-05 39.1 7.3 130 8-152 109-251 (346)
55 TIGR00693 thiE thiamine-phosph 84.3 1.8 3.9E-05 36.3 4.6 36 57-94 152-187 (196)
56 TIGR01302 IMP_dehydrog inosine 84.0 2 4.3E-05 41.6 5.4 131 6-152 223-365 (450)
57 PRK06559 nicotinate-nucleotide 83.8 8.6 0.00019 35.8 9.2 69 21-106 217-285 (290)
58 PRK01130 N-acetylmannosamine-6 83.1 2.6 5.6E-05 36.3 5.2 34 57-92 173-207 (221)
59 PRK00043 thiE thiamine-phospha 83.0 2.2 4.7E-05 35.9 4.7 36 56-93 159-194 (212)
60 cd00564 TMP_TenI Thiamine mono 83.0 1.4 3.1E-05 35.9 3.5 36 56-93 149-184 (196)
61 PRK09140 2-dehydro-3-deoxy-6-p 82.9 2.5 5.5E-05 36.9 5.1 38 54-93 147-185 (206)
62 COG2185 Sbm Methylmalonyl-CoA 81.7 9.6 0.00021 32.1 7.9 68 17-92 61-128 (143)
63 cd02932 OYE_YqiM_FMN Old yello 81.0 3.7 7.9E-05 37.9 5.7 76 5-94 240-327 (336)
64 PRK02261 methylaspartate mutas 80.5 12 0.00025 30.7 8.0 65 19-91 54-124 (137)
65 COG0800 Eda 2-keto-3-deoxy-6-p 80.1 2.6 5.6E-05 37.6 4.2 37 54-92 150-186 (211)
66 cd02072 Glm_B12_BD B12 binding 79.3 16 0.00035 29.9 8.4 52 33-92 64-121 (128)
67 PRK08883 ribulose-phosphate 3- 78.5 4.4 9.6E-05 35.7 5.2 35 57-93 167-201 (220)
68 TIGR01163 rpe ribulose-phospha 78.1 5.5 0.00012 33.4 5.5 35 58-94 166-200 (210)
69 PRK06015 keto-hydroxyglutarate 77.8 4.8 0.0001 35.4 5.2 37 54-92 141-177 (201)
70 PRK08745 ribulose-phosphate 3- 77.7 6 0.00013 35.2 5.8 37 54-93 169-205 (223)
71 PRK08508 biotin synthase; Prov 77.4 14 0.00031 33.3 8.3 75 5-87 42-119 (279)
72 PRK05581 ribulose-phosphate 3- 77.2 6.6 0.00014 33.3 5.8 35 58-94 171-205 (220)
73 TIGR01037 pyrD_sub1_fam dihydr 75.8 11 0.00024 34.0 7.1 34 58-93 235-269 (300)
74 PRK07695 transcriptional regul 75.7 2.9 6.3E-05 35.5 3.2 35 57-93 149-183 (201)
75 cd00429 RPE Ribulose-5-phospha 74.7 11 0.00024 31.4 6.4 36 57-94 166-201 (211)
76 PRK08091 ribulose-phosphate 3- 73.4 9.3 0.0002 34.3 5.9 46 37-92 167-212 (228)
77 cd02803 OYE_like_FMN_family Ol 73.1 19 0.0004 32.7 7.9 37 57-94 281-318 (327)
78 cd04735 OYE_like_4_FMN Old yel 72.6 7.2 0.00016 36.4 5.3 75 5-94 234-320 (353)
79 PF01645 Glu_synthase: Conserv 71.9 12 0.00025 36.0 6.5 55 35-103 258-314 (368)
80 PRK10605 N-ethylmaleimide redu 71.9 19 0.0004 34.0 7.9 44 58-107 293-336 (362)
81 cd02933 OYE_like_FMN Old yello 71.7 14 0.00031 34.4 7.0 37 57-94 285-321 (338)
82 PTZ00314 inosine-5'-monophosph 70.6 13 0.00028 36.7 6.7 131 6-151 240-381 (495)
83 cd04731 HisF The cyclase subun 70.1 13 0.00028 32.4 6.0 76 6-93 149-229 (243)
84 PRK05567 inosine 5'-monophosph 70.0 7.6 0.00016 38.0 5.0 129 7-152 228-369 (486)
85 PRK13307 bifunctional formalde 69.9 13 0.00029 35.8 6.5 36 56-93 329-364 (391)
86 cd04730 NPD_like 2-Nitropropan 69.9 25 0.00055 30.0 7.7 39 57-97 156-195 (236)
87 cd04733 OYE_like_2_FMN Old yel 69.0 21 0.00046 33.0 7.5 37 57-94 292-329 (338)
88 cd01469 vWA_integrins_alpha_su 68.6 20 0.00043 29.7 6.6 39 52-90 100-144 (177)
89 PRK14057 epimerase; Provisiona 68.1 13 0.00029 33.9 5.8 36 54-92 191-226 (254)
90 cd02931 ER_like_FMN Enoate red 68.0 14 0.0003 35.1 6.1 74 5-94 251-342 (382)
91 PRK09722 allulose-6-phosphate 67.9 12 0.00026 33.5 5.3 36 54-92 167-203 (229)
92 PRK07259 dihydroorotate dehydr 67.9 19 0.00042 32.4 6.8 35 57-93 234-269 (301)
93 cd04740 DHOD_1B_like Dihydroor 67.8 34 0.00075 30.6 8.4 35 57-93 231-266 (296)
94 cd04734 OYE_like_3_FMN Old yel 67.4 13 0.00028 34.7 5.8 76 5-94 227-322 (343)
95 cd02801 DUS_like_FMN Dihydrour 66.8 34 0.00073 29.1 7.8 37 56-93 182-219 (231)
96 PLN02334 ribulose-phosphate 3- 66.7 12 0.00026 32.6 5.1 35 57-93 174-208 (229)
97 PTZ00441 sporozoite surface pr 66.5 20 0.00043 36.5 7.1 36 54-89 148-189 (576)
98 COG0269 SgbH 3-hexulose-6-phos 65.2 23 0.00049 31.9 6.5 36 58-95 165-200 (217)
99 PRK13523 NADPH dehydrogenase N 65.1 12 0.00025 35.1 4.9 74 5-94 226-312 (337)
100 PRK04180 pyridoxal biosynthesi 64.7 34 0.00073 32.1 7.8 64 29-94 153-241 (293)
101 PRK07379 coproporphyrinogen II 64.1 39 0.00084 32.1 8.3 80 10-89 52-136 (400)
102 COG0036 Rpe Pentose-5-phosphat 63.9 13 0.00028 33.4 4.8 36 57-94 169-204 (220)
103 KOG2550 IMP dehydrogenase/GMP 63.4 9.4 0.0002 37.7 4.0 116 22-152 264-392 (503)
104 PF00834 Ribul_P_3_epim: Ribul 63.4 6.4 0.00014 34.3 2.7 46 37-92 154-199 (201)
105 cd00331 IGPS Indole-3-glycerol 63.2 30 0.00066 29.5 6.8 37 56-94 171-208 (217)
106 PRK08898 coproporphyrinogen II 62.9 45 0.00097 31.6 8.5 71 19-89 71-143 (394)
107 PRK07028 bifunctional hexulose 62.5 29 0.00063 33.2 7.2 35 58-94 163-197 (430)
108 TIGR00736 nifR3_rel_arch TIM-b 62.2 27 0.00058 31.3 6.5 73 7-91 149-224 (231)
109 COG3693 XynA Beta-1,4-xylanase 62.2 9.5 0.00021 36.4 3.8 49 39-93 173-232 (345)
110 TIGR03572 WbuZ glycosyl amidat 61.5 28 0.0006 30.1 6.4 32 57-90 197-230 (232)
111 cd04727 pdxS PdxS is a subunit 61.2 44 0.00096 31.2 7.9 76 17-94 130-232 (283)
112 PRK06843 inosine 5-monophospha 60.1 38 0.00082 33.0 7.5 133 6-152 152-294 (404)
113 smart00878 Biotin_carb_C Bioti 59.5 2.8 6.1E-05 33.2 -0.2 56 23-90 29-84 (107)
114 cd01473 vWA_CTRP CTRP for CS 59.3 44 0.00095 28.4 7.1 36 54-89 107-150 (192)
115 PRK00278 trpC indole-3-glycero 59.3 42 0.0009 30.2 7.3 35 58-94 213-247 (260)
116 PRK04302 triosephosphate isome 59.3 32 0.0007 29.8 6.4 37 56-94 172-209 (223)
117 cd01456 vWA_ywmD_type VWA ywmD 59.0 37 0.00079 28.6 6.5 37 53-89 132-179 (206)
118 cd02911 arch_FMN Archeal FMN-b 58.4 33 0.00071 30.4 6.4 73 3-89 148-222 (233)
119 cd02810 DHOD_DHPD_FMN Dihydroo 58.4 41 0.00088 29.9 7.0 35 57-93 243-278 (289)
120 TIGR00177 molyb_syn molybdenum 58.0 99 0.0022 25.0 9.2 69 7-87 28-100 (144)
121 cd02930 DCR_FMN 2,4-dienoyl-Co 57.9 15 0.00033 34.1 4.4 76 5-94 223-313 (353)
122 TIGR02129 hisA_euk phosphoribo 57.2 46 0.001 30.4 7.2 69 9-93 41-110 (253)
123 PF06135 DUF965: Bacterial pro 56.3 5.6 0.00012 30.4 1.0 36 10-46 23-64 (79)
124 cd04738 DHOD_2_like Dihydrooro 55.3 33 0.00071 31.7 6.1 35 56-92 279-314 (327)
125 PRK05660 HemN family oxidoredu 55.2 73 0.0016 30.0 8.5 69 20-88 57-127 (378)
126 PLN02274 inosine-5'-monophosph 54.4 39 0.00085 33.5 6.8 133 6-152 247-389 (505)
127 PF00733 Asn_synthase: Asparag 54.0 19 0.00041 30.3 4.0 72 38-110 1-81 (255)
128 smart00633 Glyco_10 Glycosyl h 53.6 29 0.00063 30.6 5.2 48 39-92 105-163 (254)
129 cd04722 TIM_phosphate_binding 53.5 15 0.00033 29.1 3.2 31 56-88 169-200 (200)
130 cd01477 vWA_F09G8-8_type VWA F 53.5 29 0.00064 29.7 5.1 37 53-89 129-172 (193)
131 PRK09057 coproporphyrinogen II 53.2 68 0.0015 30.2 7.9 70 20-89 54-125 (380)
132 PRK13396 3-deoxy-7-phosphohept 53.0 70 0.0015 30.6 8.0 80 5-94 114-198 (352)
133 cd01454 vWA_norD_type norD typ 52.8 26 0.00055 28.6 4.5 39 54-92 102-156 (174)
134 cd04747 OYE_like_5_FMN Old yel 52.5 26 0.00056 33.3 5.0 37 57-94 280-335 (361)
135 cd00452 KDPG_aldolase KDPG and 52.2 89 0.0019 26.3 7.8 64 5-80 15-78 (190)
136 cd01464 vWA_subfamily VWA subf 52.1 69 0.0015 26.1 7.0 37 54-90 106-149 (176)
137 PLN02411 12-oxophytodienoate r 51.3 48 0.001 31.7 6.6 50 58-115 314-363 (391)
138 cd02940 DHPD_FMN Dihydropyrimi 51.2 76 0.0016 28.8 7.7 35 56-92 251-286 (299)
139 PRK13361 molybdenum cofactor b 50.9 92 0.002 28.6 8.3 64 10-77 105-178 (329)
140 TIGR00433 bioB biotin syntheta 50.5 1.2E+02 0.0027 26.8 8.8 71 6-89 65-142 (296)
141 cd02808 GltS_FMN Glutamate syn 50.5 98 0.0021 29.6 8.6 48 37-92 271-319 (392)
142 PRK13125 trpA tryptophan synth 50.1 17 0.00038 32.1 3.3 33 58-92 186-219 (244)
143 PRK07114 keto-hydroxyglutarate 50.0 1.4E+02 0.003 26.6 8.9 66 6-79 27-92 (222)
144 cd01542 PBP1_TreR_like Ligand- 49.9 1.1E+02 0.0023 25.6 7.9 63 13-86 23-86 (259)
145 cd01480 vWA_collagen_alpha_1-V 49.4 83 0.0018 26.1 7.1 36 53-88 107-150 (186)
146 TIGR01182 eda Entner-Doudoroff 49.4 1.2E+02 0.0025 26.8 8.2 71 5-90 19-89 (204)
147 PTZ00170 D-ribulose-5-phosphat 49.4 38 0.00083 29.8 5.3 35 57-93 173-207 (228)
148 PRK13398 3-deoxy-7-phosphohept 48.0 92 0.002 28.3 7.7 78 5-94 40-124 (266)
149 cd01471 vWA_micronemal_protein 47.9 72 0.0016 26.1 6.5 38 53-90 106-149 (186)
150 PRK08207 coproporphyrinogen II 47.2 60 0.0013 32.1 6.8 69 19-87 216-288 (488)
151 PRK07107 inosine 5-monophospha 46.8 40 0.00086 33.5 5.5 135 4-152 239-390 (502)
152 PRK09426 methylmalonyl-CoA mut 46.7 86 0.0019 32.7 8.0 69 16-92 630-698 (714)
153 COG1902 NemA NADH:flavin oxido 45.7 69 0.0015 30.6 6.7 78 5-94 236-325 (363)
154 cd06294 PBP1_ycjW_transcriptio 44.6 1.3E+02 0.0029 25.1 7.7 63 13-85 28-90 (270)
155 PRK05473 hypothetical protein; 44.4 9.1 0.0002 29.7 0.5 36 10-46 26-67 (86)
156 TIGR00262 trpA tryptophan synt 44.0 23 0.00051 31.8 3.2 33 58-92 199-232 (256)
157 PRK05799 coproporphyrinogen II 43.8 1.2E+02 0.0027 28.1 8.0 78 8-86 36-117 (374)
158 cd00381 IMPDH IMPDH: The catal 43.1 1.2E+02 0.0025 28.3 7.7 39 57-97 197-236 (325)
159 PRK08208 coproporphyrinogen II 43.1 57 0.0012 31.3 5.8 66 24-89 94-162 (430)
160 cd01472 vWA_collagen von Wille 43.0 55 0.0012 26.2 4.9 37 53-89 101-141 (164)
161 cd02812 PcrB_like PcrB_like pr 43.0 1E+02 0.0022 27.5 6.9 71 7-93 136-210 (219)
162 PRK13585 1-(5-phosphoribosyl)- 42.9 73 0.0016 27.5 6.0 35 57-93 193-228 (241)
163 PF15560 Imm8: Immunity protei 41.7 29 0.00064 28.9 3.1 63 31-93 18-89 (133)
164 PRK09058 coproporphyrinogen II 41.5 1.1E+02 0.0024 29.6 7.6 69 21-89 114-184 (449)
165 PRK09249 coproporphyrinogen II 41.4 1.4E+02 0.0031 28.8 8.2 70 20-89 101-172 (453)
166 cd01465 vWA_subgroup VWA subgr 41.4 1.1E+02 0.0025 24.0 6.5 32 57-88 98-139 (170)
167 cd00198 vWFA Von Willebrand fa 41.0 1.1E+02 0.0023 22.8 6.1 36 53-88 99-141 (161)
168 PLN02389 biotin synthase 40.9 2E+02 0.0044 27.5 9.1 72 5-86 118-194 (379)
169 PTZ00413 lipoate synthase; Pro 40.9 91 0.002 30.5 6.7 67 8-85 182-257 (398)
170 TIGR01306 GMP_reduct_2 guanosi 40.8 2.5E+02 0.0053 26.5 9.5 72 7-87 94-167 (321)
171 TIGR02495 NrdG2 anaerobic ribo 40.7 1.2E+02 0.0026 25.0 6.7 62 10-78 51-112 (191)
172 PRK06582 coproporphyrinogen II 40.7 1E+02 0.0022 29.4 7.0 70 20-89 61-132 (390)
173 PRK13685 hypothetical protein; 40.5 94 0.002 28.5 6.6 34 56-89 194-239 (326)
174 PRK08255 salicylyl-CoA 5-hydro 40.2 84 0.0018 32.5 6.8 37 57-94 687-724 (765)
175 PRK08599 coproporphyrinogen II 39.9 2.1E+02 0.0046 26.6 9.0 68 21-88 51-120 (377)
176 PF04123 DUF373: Domain of unk 39.8 1.5E+02 0.0032 28.4 7.9 73 6-83 51-126 (344)
177 cd02929 TMADH_HD_FMN Trimethyl 39.4 1.1E+02 0.0023 29.0 6.9 37 57-94 289-326 (370)
178 PRK12928 lipoyl synthase; Prov 39.2 1.5E+02 0.0033 27.2 7.7 75 5-86 89-171 (290)
179 cd06273 PBP1_GntR_like_1 This 39.2 1.8E+02 0.0039 24.3 7.7 63 11-84 21-84 (268)
180 cd01482 vWA_collagen_alphaI-XI 38.8 1.5E+02 0.0032 23.9 6.9 36 53-88 101-140 (164)
181 TIGR00539 hemN_rel putative ox 38.6 2.3E+02 0.005 26.2 9.0 68 21-88 51-120 (360)
182 cd00381 IMPDH IMPDH: The catal 38.5 1.2E+02 0.0027 28.1 7.1 131 6-152 93-235 (325)
183 PF13768 VWA_3: von Willebrand 38.3 1.4E+02 0.0029 23.6 6.5 48 42-89 83-136 (155)
184 PRK10415 tRNA-dihydrouridine s 38.3 1.2E+02 0.0026 28.0 7.0 35 57-93 194-230 (321)
185 COG1058 CinA Predicted nucleot 38.0 91 0.002 28.6 6.0 50 6-66 21-70 (255)
186 cd00958 DhnA Class I fructose- 37.9 1.7E+02 0.0037 25.2 7.5 66 12-94 149-221 (235)
187 cd00885 cinA Competence-damage 37.8 1E+02 0.0023 25.9 6.0 38 7-44 20-57 (170)
188 cd01458 vWA_ku Ku70/Ku80 N-ter 37.8 1.1E+02 0.0024 26.1 6.3 57 29-89 105-173 (218)
189 PRK08649 inosine 5-monophospha 37.7 94 0.002 29.7 6.3 43 56-100 255-298 (368)
190 TIGR02151 IPP_isom_2 isopenten 36.8 1.2E+02 0.0027 28.1 6.9 36 56-93 253-289 (333)
191 cd04742 NPD_FabD 2-Nitropropan 36.6 2.5E+02 0.0055 27.5 9.1 71 21-95 179-256 (418)
192 PRK08005 epimerase; Validated 36.6 83 0.0018 27.8 5.4 33 59-93 165-197 (210)
193 PF02057 Glyco_hydro_59: Glyco 36.6 54 0.0012 34.0 4.7 43 19-68 173-215 (669)
194 cd02809 alpha_hydroxyacid_oxid 36.4 1.8E+02 0.0039 26.4 7.7 34 57-92 227-261 (299)
195 PRK06015 keto-hydroxyglutarate 36.0 2.3E+02 0.0051 24.8 8.1 63 5-79 15-77 (201)
196 cd01450 vWFA_subfamily_ECM Von 35.9 85 0.0019 24.1 4.9 35 54-88 102-142 (161)
197 PRK03670 competence damage-ind 35.7 1E+02 0.0022 27.9 5.9 50 7-66 21-70 (252)
198 PRK08318 dihydropyrimidine deh 35.6 1.3E+02 0.0028 28.6 6.9 35 56-92 252-287 (420)
199 PF13519 VWA_2: von Willebrand 35.4 82 0.0018 24.4 4.7 37 55-91 99-139 (172)
200 cd06297 PBP1_LacI_like_12 Liga 35.0 2.4E+02 0.0052 24.0 7.9 64 12-85 22-85 (269)
201 PRK05718 keto-hydroxyglutarate 34.9 2.5E+02 0.0055 24.6 8.2 27 5-31 26-52 (212)
202 COG1765 Predicted redox protei 33.9 32 0.00068 28.1 2.2 56 8-78 54-112 (137)
203 PF01081 Aldolase: KDPG and KH 33.9 1.2E+02 0.0026 26.5 5.9 64 5-80 19-82 (196)
204 PRK02615 thiamine-phosphate py 32.9 44 0.00095 31.8 3.2 35 57-93 294-328 (347)
205 cd01476 VWA_integrin_invertebr 32.8 2E+02 0.0044 22.7 6.7 37 53-89 101-142 (163)
206 COG2390 DeoR Transcriptional r 32.7 1.4E+02 0.003 28.2 6.4 62 22-93 55-129 (321)
207 TIGR00381 cdhD CO dehydrogenas 32.6 2E+02 0.0044 28.1 7.6 52 16-76 150-211 (389)
208 cd06283 PBP1_RegR_EndR_KdgR_li 32.5 2.8E+02 0.006 23.0 7.8 62 13-85 23-85 (267)
209 TIGR00735 hisF imidazoleglycer 32.2 1.1E+02 0.0024 27.1 5.5 77 7-94 31-110 (254)
210 cd01475 vWA_Matrilin VWA_Matri 32.1 85 0.0018 26.9 4.7 33 56-88 109-145 (224)
211 PRK13397 3-deoxy-7-phosphohept 32.1 1.4E+02 0.003 27.3 6.2 79 6-94 29-112 (250)
212 PRK05628 coproporphyrinogen II 31.9 2.6E+02 0.0057 26.0 8.2 68 21-88 59-128 (375)
213 smart00500 SFM Splicing Factor 31.9 33 0.00072 23.3 1.6 21 67-87 3-23 (44)
214 cd04731 HisF The cyclase subun 31.4 1.3E+02 0.0028 26.1 5.7 72 7-93 28-106 (243)
215 PRK07094 biotin synthase; Prov 31.4 2.6E+02 0.0057 25.2 8.0 68 5-80 72-141 (323)
216 PRK11815 tRNA-dihydrouridine s 31.4 1.5E+02 0.0033 27.5 6.5 35 56-93 204-239 (333)
217 COG1059 Thermostable 8-oxoguan 31.0 44 0.00095 29.8 2.6 56 11-88 76-131 (210)
218 cd01462 VWA_YIEM_type VWA YIEM 30.9 2E+02 0.0043 22.5 6.3 34 56-89 95-135 (152)
219 cd01467 vWA_BatA_type VWA BatA 30.7 2.2E+02 0.0047 22.8 6.7 34 55-88 102-142 (180)
220 PF00478 IMPDH: IMP dehydrogen 30.3 1.4E+02 0.003 28.7 6.0 128 8-152 109-249 (352)
221 cd06278 PBP1_LacI_like_2 Ligan 30.0 2.7E+02 0.0059 23.0 7.3 65 12-87 22-86 (266)
222 PRK10550 tRNA-dihydrouridine s 29.9 2.1E+02 0.0046 26.5 7.1 34 58-92 195-229 (312)
223 PF03060 NMO: Nitronate monoox 29.8 1.1E+02 0.0025 28.2 5.4 63 19-96 164-228 (330)
224 cd06298 PBP1_CcpA_like Ligand- 29.5 3.3E+02 0.0072 22.6 8.0 62 14-85 24-85 (268)
225 PRK15108 biotin synthase; Prov 29.4 3.6E+02 0.0079 25.2 8.7 72 5-86 78-152 (345)
226 cd06321 PBP1_ABC_sugar_binding 29.3 3.4E+02 0.0074 22.8 8.0 66 12-86 22-90 (271)
227 PRK00876 nadE NAD synthetase; 29.2 1.4E+02 0.003 28.1 5.9 57 30-89 10-68 (326)
228 PRK07360 FO synthase subunit 2 29.1 1.7E+02 0.0037 27.5 6.5 70 6-84 94-177 (371)
229 PF10649 DUF2478: Protein of u 29.1 39 0.00085 28.8 2.0 29 17-45 64-92 (159)
230 cd06271 PBP1_AglR_RafR_like Li 28.8 3.3E+02 0.0071 22.6 7.6 62 13-84 27-88 (268)
231 TIGR01949 AroFGH_arch predicte 28.4 3.2E+02 0.0069 24.2 7.8 36 57-94 192-234 (258)
232 cd03466 Nitrogenase_NifN_2 Nit 28.3 3.2E+02 0.007 26.1 8.3 69 7-88 311-379 (429)
233 TIGR01536 asn_synth_AEB aspara 28.3 1.5E+02 0.0033 28.4 6.2 57 32-89 231-290 (467)
234 PF00977 His_biosynth: Histidi 28.3 1E+02 0.0022 27.0 4.5 33 57-91 191-224 (229)
235 cd06285 PBP1_LacI_like_7 Ligan 28.2 3.6E+02 0.0077 22.6 8.3 65 12-87 22-87 (265)
236 PF01884 PcrB: PcrB family; I 28.0 3.7E+02 0.008 24.3 8.1 64 18-92 152-216 (230)
237 TIGR02814 pfaD_fam PfaD family 27.9 2.6E+02 0.0057 27.6 7.7 61 31-95 200-261 (444)
238 PRK05458 guanosine 5'-monophos 27.8 4.2E+02 0.0091 25.0 8.8 135 6-152 96-239 (326)
239 PRK08673 3-deoxy-7-phosphohept 27.5 1.8E+02 0.004 27.5 6.3 80 5-94 106-190 (335)
240 cd01453 vWA_transcription_fact 27.5 1.9E+02 0.004 24.3 5.9 34 56-89 108-147 (183)
241 PRK09431 asnB asparagine synth 27.0 1.5E+02 0.0033 29.7 6.0 57 31-89 204-276 (554)
242 cd00758 MoCF_BD MoCF_BD: molyb 26.9 2.2E+02 0.0049 22.5 6.0 35 9-43 22-56 (133)
243 cd07373 2A5CPDO_A The alpha su 26.9 1.8E+02 0.0038 26.2 5.9 25 8-32 93-122 (271)
244 cd06316 PBP1_ABC_sugar_binding 26.9 3.3E+02 0.0072 23.4 7.5 63 13-85 23-88 (294)
245 TIGR01304 IMP_DH_rel_2 IMP deh 26.8 1.3E+02 0.0029 28.8 5.4 53 54-108 252-305 (369)
246 PRK06843 inosine 5-monophospha 26.6 4.5E+02 0.0097 25.7 8.9 39 57-97 256-295 (404)
247 COG1080 PtsA Phosphoenolpyruva 26.5 98 0.0021 31.6 4.5 36 33-75 369-404 (574)
248 smart00729 Elp3 Elongator prot 26.5 3.3E+02 0.007 21.5 8.6 72 8-79 35-111 (216)
249 cd01452 VWA_26S_proteasome_sub 26.4 1.1E+02 0.0023 26.6 4.3 24 69-92 127-150 (187)
250 PRK10703 DNA-binding transcrip 26.4 3.9E+02 0.0085 23.5 8.0 27 59-85 119-146 (341)
251 TIGR02134 transald_staph trans 26.3 1.7E+02 0.0037 26.4 5.7 47 26-81 147-195 (236)
252 PRK12595 bifunctional 3-deoxy- 26.2 2.3E+02 0.005 26.9 6.8 79 6-94 132-215 (360)
253 cd01461 vWA_interalpha_trypsin 26.2 2.5E+02 0.0054 22.0 6.1 37 53-89 97-139 (171)
254 PRK12376 putative translaldola 26.1 1.7E+02 0.0037 26.4 5.6 46 26-80 147-194 (236)
255 PRK12755 phospho-2-dehydro-3-d 26.1 1.4E+02 0.003 28.7 5.3 55 29-94 117-171 (353)
256 TIGR00272 DPH2 diphthamide bio 26.0 88 0.0019 31.2 4.1 53 21-85 282-337 (496)
257 cd06318 PBP1_ABC_sugar_binding 26.0 3.5E+02 0.0076 22.8 7.4 63 12-85 22-87 (282)
258 cd06309 PBP1_YtfQ_like Peripla 26.0 3.8E+02 0.0082 22.6 7.6 62 13-85 23-87 (273)
259 PRK13347 coproporphyrinogen II 25.8 3.7E+02 0.008 26.0 8.2 67 23-89 105-173 (453)
260 PF08134 cIII: cIII protein fa 25.8 85 0.0018 21.3 2.7 19 32-50 19-37 (44)
261 PRK06552 keto-hydroxyglutarate 25.5 3.4E+02 0.0075 23.8 7.4 38 54-91 38-77 (213)
262 PRK06223 malate dehydrogenase; 25.4 1.7E+02 0.0036 26.3 5.5 39 54-92 110-149 (307)
263 PRK01033 imidazole glycerol ph 25.2 1.6E+02 0.0035 26.2 5.4 72 7-93 31-109 (258)
264 cd00311 TIM Triosephosphate is 25.1 2.1E+02 0.0045 25.7 6.0 52 35-91 181-232 (242)
265 PRK14024 phosphoribosyl isomer 25.0 2E+02 0.0043 25.3 5.8 72 7-94 33-111 (241)
266 cd01470 vWA_complement_factors 24.6 2.3E+02 0.005 23.5 5.9 35 55-89 112-165 (198)
267 TIGR03551 F420_cofH 7,8-dideme 24.5 2.7E+02 0.0058 25.7 6.8 68 5-79 72-152 (343)
268 TIGR00322 diphth2_R diphthamid 24.5 1E+02 0.0023 28.9 4.1 51 22-84 234-287 (332)
269 PRK14567 triosephosphate isome 24.4 2.8E+02 0.0061 25.3 6.8 35 56-91 201-235 (253)
270 TIGR01501 MthylAspMutase methy 24.3 4E+02 0.0087 21.9 7.9 51 33-91 66-122 (134)
271 cd06267 PBP1_LacI_sugar_bindin 24.2 3.7E+02 0.0081 21.8 7.0 63 15-87 25-87 (264)
272 TIGR02666 moaA molybdenum cofa 24.1 4.5E+02 0.0098 23.9 8.2 60 10-76 103-176 (334)
273 PRK13585 1-(5-phosphoribosyl)- 24.1 3.2E+02 0.007 23.4 6.9 76 6-93 32-111 (241)
274 TIGR03151 enACPred_II putative 24.0 2.4E+02 0.0051 26.0 6.3 38 57-96 161-199 (307)
275 PF01791 DeoC: DeoC/LacD famil 23.9 4.8E+02 0.01 22.6 8.2 66 5-81 148-224 (236)
276 TIGR03275 methan_mark_8 putati 23.8 2.7E+02 0.0059 25.7 6.5 62 24-93 139-202 (259)
277 COG4937 Predicted regulatory d 23.7 2.2E+02 0.0047 24.5 5.4 76 20-109 59-140 (171)
278 PF05913 DUF871: Bacterial pro 23.7 69 0.0015 30.5 2.8 44 22-80 90-135 (357)
279 cd00945 Aldolase_Class_I Class 23.6 3.9E+02 0.0084 21.4 8.6 22 57-78 172-194 (201)
280 COG0502 BioB Biotin synthase a 23.5 2E+02 0.0044 27.4 5.9 73 7-93 88-165 (335)
281 PF00994 MoCF_biosynth: Probab 23.2 1.9E+02 0.0042 23.0 5.0 49 7-66 18-66 (144)
282 TIGR03682 arCOG04112 arCOG0411 23.2 1.2E+02 0.0026 28.2 4.2 51 21-84 213-266 (308)
283 PRK05904 coproporphyrinogen II 23.2 4.5E+02 0.0097 24.6 8.1 67 20-88 55-123 (353)
284 cd06305 PBP1_methylthioribose_ 23.2 4.3E+02 0.0093 22.1 7.4 63 12-85 22-87 (273)
285 COG0134 TrpC Indole-3-glycerol 23.1 2.5E+02 0.0054 25.8 6.2 74 9-94 167-243 (254)
286 cd05294 LDH-like_MDH_nadp A la 23.1 1.8E+02 0.004 26.6 5.4 38 54-91 112-150 (309)
287 TIGR03572 WbuZ glycosyl amidat 23.0 2.3E+02 0.0049 24.4 5.7 72 7-93 31-109 (232)
288 PRK13361 molybdenum cofactor b 23.0 2.6E+02 0.0057 25.6 6.4 67 7-79 49-115 (329)
289 TIGR00538 hemN oxygen-independ 23.0 3.5E+02 0.0075 26.1 7.5 68 21-88 102-171 (455)
290 cd04732 HisA HisA. Phosphorib 22.9 2.1E+02 0.0045 24.4 5.4 72 7-93 30-108 (234)
291 PRK01215 competence damage-ind 22.8 2.4E+02 0.0053 25.6 6.0 50 7-67 24-73 (264)
292 TIGR01302 IMP_dehydrog inosine 22.5 4.9E+02 0.011 25.2 8.5 40 57-98 327-367 (450)
293 cd06293 PBP1_LacI_like_11 Liga 22.4 4.7E+02 0.01 21.9 8.2 62 13-85 23-85 (269)
294 PF03599 CdhD: CO dehydrogenas 22.3 1E+02 0.0022 30.0 3.6 48 18-76 68-116 (386)
295 cd00956 Transaldolase_FSA Tran 22.2 2.8E+02 0.0061 24.1 6.2 71 2-80 33-103 (211)
296 PRK07565 dihydroorotate dehydr 22.2 3.3E+02 0.0071 25.1 6.9 34 57-92 239-273 (334)
297 TIGR00259 thylakoid_BtpA membr 22.1 2.1E+02 0.0046 26.2 5.5 33 56-91 199-231 (257)
298 cd04732 HisA HisA. Phosphorib 22.1 2.4E+02 0.0053 23.9 5.7 35 57-93 190-225 (234)
299 PTZ00077 asparagine synthetase 21.7 2.4E+02 0.0052 28.6 6.3 57 32-89 215-284 (586)
300 PF03437 BtpA: BtpA family; I 21.7 1.5E+02 0.0032 27.1 4.4 32 58-92 201-232 (254)
301 TIGR00737 nifR3_yhdG putative 21.7 3E+02 0.0064 25.1 6.5 34 58-93 193-228 (319)
302 cd01481 vWA_collagen_alpha3-VI 21.6 1.3E+02 0.0029 24.7 3.9 35 53-89 104-142 (165)
303 cd00405 PRAI Phosphoribosylant 21.6 1.3E+02 0.0029 25.4 3.9 76 4-88 5-81 (203)
304 cd00887 MoeA MoeA family. Memb 21.6 5.5E+02 0.012 24.3 8.5 70 7-87 196-269 (394)
305 cd06295 PBP1_CelR Ligand bindi 21.5 4.9E+02 0.011 21.8 7.6 62 12-85 33-94 (275)
306 TIGR01769 GGGP geranylgeranylg 21.5 4.2E+02 0.0091 23.3 7.1 69 8-87 136-205 (205)
307 cd01540 PBP1_arabinose_binding 21.4 4.5E+02 0.0097 22.3 7.2 62 13-85 23-86 (289)
308 PF02581 TMP-TENI: Thiamine mo 21.2 1.2E+02 0.0026 25.2 3.5 27 58-86 150-176 (180)
309 cd01575 PBP1_GntR Ligand-bindi 21.2 3.9E+02 0.0085 22.1 6.7 17 9-25 105-121 (268)
310 COG4472 Uncharacterized protei 21.1 55 0.0012 25.4 1.3 36 10-46 26-67 (88)
311 cd06270 PBP1_GalS_like Ligand 21.1 4.9E+02 0.011 21.7 7.7 30 56-85 56-85 (268)
312 cd02811 IDI-2_FMN Isopentenyl- 21.0 2.9E+02 0.0062 25.6 6.3 34 57-92 255-289 (326)
313 cd05290 LDH_3 A subgroup of L- 21.0 1.6E+02 0.0035 27.2 4.6 52 42-93 98-150 (307)
314 cd06278 PBP1_LacI_like_2 Ligan 20.9 3.9E+02 0.0084 22.1 6.6 14 103-116 205-218 (266)
315 cd06578 HemD Uroporphyrinogen- 20.7 3.7E+02 0.008 22.1 6.4 26 12-38 89-114 (239)
316 cd06292 PBP1_LacI_like_10 Liga 20.7 4.2E+02 0.0091 22.2 6.8 61 14-85 24-90 (273)
317 cd01974 Nitrogenase_MoFe_beta 20.7 5E+02 0.011 24.9 8.0 73 6-89 313-385 (435)
318 PRK15427 colanic acid biosynth 20.7 5.4E+02 0.012 24.0 8.2 68 3-84 235-302 (406)
319 TIGR00161 conserved hypothetic 20.6 61 0.0013 28.8 1.7 30 21-50 195-224 (238)
320 PRK06256 biotin synthase; Vali 20.5 6.5E+02 0.014 22.9 9.0 73 5-87 93-169 (336)
321 cd00553 NAD_synthase NAD+ synt 20.4 1.3E+02 0.0029 26.4 3.8 68 35-109 10-87 (248)
322 cd02067 B12-binding B12 bindin 20.4 3.9E+02 0.0085 20.3 7.7 12 11-22 19-30 (119)
323 CHL00200 trpA tryptophan synth 20.2 1.7E+02 0.0037 26.6 4.5 36 56-93 201-237 (263)
324 PF09872 DUF2099: Uncharacteri 20.2 3.6E+02 0.0079 24.9 6.5 61 24-92 139-201 (258)
No 1
>PLN02885 nicotinate phosphoribosyltransferase
Probab=100.00 E-value=2e-65 Score=496.48 Aligned_cols=229 Identities=76% Similarity=1.197 Sum_probs=221.0
Q ss_pred CcCchHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026886 1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (231)
Q Consensus 1 l~SGvpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~ 80 (231)
++||++||++||++|+++|+++.|||||||||++||+++|++||+++|+|+++|+++++|+|||||||++|.+|+++|++
T Consensus 292 l~sg~~n~~~v~~~l~~~g~~~~GVRlDSGDl~~ls~~~r~~~~~~~~~l~~~g~~~~kIv~Sn~Lde~~i~~L~~~g~~ 371 (545)
T PLN02885 292 MKSGIPNFCAVALALNDLGYKAVGIRLDSGDLAYLSLEARKFFRTIEEELGVPGFGKMSITASNDINEETLDALNKQGHE 371 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCeeEECCCChHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEeecCcccccCCCCcceeEEEEeEECCcceeeccCCCCcCCCCCcceeeeecCCCCCceeeEEecCCCCCCCCCcce
Q 026886 81 VDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERI 160 (231)
Q Consensus 81 id~fGVGT~Lvt~~~~p~l~~VyKLve~~g~P~~KlS~~~~K~t~PG~K~v~R~~~~~g~~~~D~i~l~~e~~~~~~~~l 160 (231)
||+|||||+|+||.++|+||||||||++||+|+||+|++++|+|+||+|+|||+||++|++.+|+|++.+|++|..|+++
T Consensus 372 id~fGVGT~LvT~~~~p~l~~VyKLVe~~g~p~~KlS~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~l~~e~~~~~~~~~ 451 (545)
T PLN02885 372 IDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDVEKVTIPCKKRCYRLYGKEGYPLVDLMTGENEPPPKVGERI 451 (545)
T ss_pred ccEEecCCccccCCCCCCCceEEEEEEECCeeeeEecCCCCCccCCcceEEEEEEcCCCCEEEEEEecCCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999998789999999999999767789999
Q ss_pred eecCCCCCCceeeecCccceecccccccC--Ccc-cCCCChhhHHHHHhhhcCCcce-eeeccCCCCCccccc
Q 026886 161 LCRHPFNESKRAYVVPQKVEELLKCYWPG--SSG-GDYPMVFGDVQFLSTLNGPFIS-SLFLVRPMSKPVSVP 229 (231)
Q Consensus 161 ~~~~p~~~~~~~~~~~~~~~~Ll~~~~~~--g~~-~~~P~~~s~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 229 (231)
+|+||+.+++++.+.++++++||+++|++ |+. +++|++.++|+++...+.++|. .+|+.|||.|+|++.
T Consensus 452 ~~~~p~~~~~~~~~~~~~~~~Ll~~~~~~g~g~~~~~~~~l~~~r~~~~~~l~~l~~~~~r~~~p~~y~V~~s 524 (545)
T PLN02885 452 LCRHPFNESKRAYVVPQRVEELLKCYWDGSSGKPREELPSLKEIRERCMKQLERMRPDHMRRLNPTPYKVSVS 524 (545)
T ss_pred EEeCCccchheeeeccccHHhhhHHHeECCCCcCcCCCCCHHHHHHHHHHHHhhCCHHHHhccCCccceeccC
Confidence 99999999999999999999999999999 665 5999999999999999999987 999999999999874
No 2
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=100.00 E-value=2.5e-53 Score=406.06 Aligned_cols=217 Identities=37% Similarity=0.520 Sum_probs=206.6
Q ss_pred cCchHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCce
Q 026886 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (231)
Q Consensus 2 ~SGvpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~i 81 (231)
+|||+||++|+++|.+ |+++.|||+|||||+++++++|++||++ |+++++|++||||||++|.+|..+|+++
T Consensus 239 ~~~i~~~~~~~~~l~~-~~~~~gVRlDSGDl~~l~~~vr~~ld~~-------G~~~~kIi~S~gLde~~i~~l~~~g~~i 310 (464)
T PRK09243 239 KSGVPNAIKVAKELGD-GIELGGVRIDSGDLAYLSKKVRKMLDEA-------GFTDTKIVASNDLDEYTIASLKLQGAPI 310 (464)
T ss_pred HhHHHHHHHHHHHhhc-cccCceeeCCCCCHHHHHHHHHHHHHHC-------CCCCcEEEEeCCCCHHHHHHHHhCCCCc
Confidence 4799999999999977 8899999999999999999999999998 8899999999999999999999999999
Q ss_pred eEEeecCcccccCCCCcceeEEEEeEECCc----ceeeccCCCCcCCCCCcceeeeecCCCCCceeeEEecCCCCCCCCC
Q 026886 82 DAFGIGTYLVTCYAQAALGCVFKLVEINKQ----PRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVG 157 (231)
Q Consensus 82 d~fGVGT~Lvt~~~~p~l~~VyKLve~~g~----P~~KlS~~~~K~t~PG~K~v~R~~~~~g~~~~D~i~l~~e~~~~~~ 157 (231)
|+|||||+|+|+.++|++++|||||+++|. |++|+|++++|.|+||+|+|||+|+++|++.+|+|++.+|+ + +
T Consensus 311 d~fGvGt~L~~~~~~~~l~~v~Klv~~~g~g~w~p~~K~s~~~~K~t~pG~k~v~R~~~~~~~~~~d~i~~~~e~-~--~ 387 (464)
T PRK09243 311 DGFGVGTKLVTGSDAPALGGVYKLVAIEGEGGMIPKIKLSNSPEKVTTPGRKQVYRIYDKGGKAEADVITLADEE-E--E 387 (464)
T ss_pred eEEEcCccccCCCCCCccceEEEEeEecCCCCccceeecccCCCCcCCCcceEEEEEEcCCCCcceEEEeccCCC-c--c
Confidence 999999999999999999999999999985 99999999999999999999999987799999999999985 3 7
Q ss_pred cceeecCCCCCCceeeecCccceecccccccCCcc-cCCCChhhHHHHHhhhcCCcce-eeeccCCCCCccccc
Q 026886 158 ERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSG-GDYPMVFGDVQFLSTLNGPFIS-SLFLVRPMSKPVSVP 229 (231)
Q Consensus 158 ~~l~~~~p~~~~~~~~~~~~~~~~Ll~~~~~~g~~-~~~P~~~s~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 229 (231)
+++.|+||..++++..+.+..+++|++++|++|+. .++|++.++|++.......+|. .++|.||+.|+|++.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~G~~~~~~~~l~~~r~~~~~~l~~l~~~~~~l~~p~~y~v~~s 461 (464)
T PRK09243 388 EPLKMFHPVHTYKSKTVKNFDAEPLLVPVMENGKRVYELPSLEEIRAYAAAQLASLPEEYKRLLNPHAYPVDLS 461 (464)
T ss_pred ccceeecccchhhhhcccccchhhhhHHHhcCCEEcCCCCCHHHHHHHHHHHHHhCCHHHhcccCCCceeEEec
Confidence 88999999999999999988899999999999998 5899999999999999999998 999999999999864
No 3
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=100.00 E-value=5.6e-52 Score=394.85 Aligned_cols=209 Identities=37% Similarity=0.528 Sum_probs=194.8
Q ss_pred cCchHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCce
Q 026886 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (231)
Q Consensus 2 ~SGvpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~i 81 (231)
+||++||++++++|.+.| .+.|||+|||||.+|++++|++||++ |+++++|++||||||++|.+|.++|+++
T Consensus 230 ~sg~~~~~~~~~~l~~~~-~~~gVR~DSGD~~~l~~~vr~~ld~~-------G~~~vkIi~S~gLde~~i~~l~~~g~~~ 301 (443)
T TIGR01513 230 RSGLPNAIAVAKELGEQG-KVVGVRIDSGDLLYLSKQARKQLDAA-------GLTQVKIVVSNDLDENSIAALKAEGAPI 301 (443)
T ss_pred hhhHHHHHHHHHHHhhhc-CceeEecCCCCHHHHHHHHHHHHHHc-------CCCCcEEEEeCCCCHHHHHHHHHCCCce
Confidence 589999999999997766 68999999999999999999999998 8999999999999999999999999999
Q ss_pred eEEeecCcccccCCCCcceeEEEEeEECCcceeeccCCCCcCCCCCcceeeeecCCCCCceeeEEecCCCCCCCCCccee
Q 026886 82 DAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERIL 161 (231)
Q Consensus 82 d~fGVGT~Lvt~~~~p~l~~VyKLve~~g~P~~KlS~~~~K~t~PG~K~v~R~~~~~g~~~~D~i~l~~e~~~~~~~~l~ 161 (231)
|+|||||+|+|+.++|++++|||||++||+|++|+|++++|.|.||+|+|||+|+.+|.+..|+|++.+|+ +..++++.
T Consensus 302 d~fGvGt~L~t~~~~~~l~~v~Klv~~~G~pv~K~sd~~~K~t~pG~k~v~R~~~~~g~~~~d~i~~~~e~-~~~~~~~~ 380 (443)
T TIGR01513 302 DVYGVGTSLVTASDAPALGGVYKLVAYEGRPVMKLSENPEKSTLPGRKQVFRLYDATGKFLGDELTLADEP-IEDLNQEK 380 (443)
T ss_pred eEEecCcceeecCCCCccceEEEEEeECCeeeEecCCCCcCccCCcceEEEEEeCCCCCeeeEEEEecCCC-Ccccccee
Confidence 99999999999999999999999999999999999999999999999999999986788999999999986 44566778
Q ss_pred ecCCCCCCceeeecCccceecccccccCCccc-CCCChhhHHHHHhhhcCCcce-eeeccCCCCCccccc
Q 026886 162 CRHPFNESKRAYVVPQKVEELLKCYWPGSSGG-DYPMVFGDVQFLSTLNGPFIS-SLFLVRPMSKPVSVP 229 (231)
Q Consensus 162 ~~~p~~~~~~~~~~~~~~~~Ll~~~~~~g~~~-~~P~~~s~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 229 (231)
|+||. ...++||+++|++|+++ ++|++.++|+++...+..+|. .++|.|||.|+|++.
T Consensus 381 ~~~~~----------~~~~~ll~~v~~~G~~~~~~~~l~eir~~~~~~l~~l~~~~~rl~~p~~y~v~~s 440 (443)
T TIGR01513 381 CTPVF----------APVEPLLRLVMKNGQRVRPLPSLAEIRARAREQLSKLPPEYLRLLNPHVYPVSLS 440 (443)
T ss_pred eecCC----------cchhcchhheeECCEEeCCCCCHHHHHHHHHHHHHhCCHHHhcccCCccceeecc
Confidence 88885 35679999999999985 889999999999999999998 999999999999874
No 4
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=7.9e-48 Score=366.45 Aligned_cols=193 Identities=31% Similarity=0.422 Sum_probs=178.8
Q ss_pred chHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeE
Q 026886 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (231)
Q Consensus 4 Gvpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~ 83 (231)
|++|||+||++|.+ |.++.|||+|||||++|++++|++||++ |+++++|++||||||++|.+|.++|+++|+
T Consensus 234 ~i~~ai~v~~~l~~-~~~~~gVRlDSGDl~~l~~~~r~~ld~~-------G~~~~kIi~S~gLde~~i~~l~~~g~~id~ 305 (443)
T PRK12484 234 GVRNAIEVAKELGN-RFDPRGVRLDSGDLAELSKATRAILDAA-------GLEQVKIVASGGLDEYRIAALLAAGAPIDG 305 (443)
T ss_pred HHHHHHHHHHHhhc-ccCcceeeCCCCCHHHHHHHHHHHHHHC-------CCCCcEEEEeCCCCHHHHHHHHHCCCcCeE
Confidence 89999999999976 7889999999999999999999999998 899999999999999999999999999999
Q ss_pred EeecCcccccCCCCcceeEEEEeEECCcceeeccCCCCcCCCCCcceeeeecCCCCCceeeEEecCCCCCCCCCcceeec
Q 026886 84 FGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCR 163 (231)
Q Consensus 84 fGVGT~Lvt~~~~p~l~~VyKLve~~g~P~~KlS~~~~K~t~PG~K~v~R~~~~~g~~~~D~i~l~~e~~~~~~~~l~~~ 163 (231)
|||||+|+|+.++|++++|||||+++|+|++|+|+ +|.|+||+|+|||+|+. +.+.+|++++.+|+.+.
T Consensus 306 fGvGt~L~~~~~~p~l~~v~Klv~~~g~pv~K~s~--~K~t~pG~k~v~R~~~~-~~~~~d~i~~~~e~~~~-------- 374 (443)
T PRK12484 306 FGVGTRLGVAADAPVLDSAYKLVAYEGRGVTKLSS--GKVTYPGRKQVFRLYEH-GTACGDVIGLHTENIPD-------- 374 (443)
T ss_pred EeeCcccccCCCCCccceEEEEEEecCCCeEEeCC--CCCCCCCceEEEEEcCC-CCceeEEEEecCCCCCC--------
Confidence 99999999999999999999999999999999987 89999999999999974 44789999999985321
Q ss_pred CCCCCCceeeecCccceecccccccCCccc-CCCChhhHHHHHhhhcCCcce-eeeccCCCCCccccc
Q 026886 164 HPFNESKRAYVVPQKVEELLKCYWPGSSGG-DYPMVFGDVQFLSTLNGPFIS-SLFLVRPMSKPVSVP 229 (231)
Q Consensus 164 ~p~~~~~~~~~~~~~~~~Ll~~~~~~g~~~-~~P~~~s~r~~~~~~~~~~~~-~~~~~~~~~~~~~~~ 229 (231)
..++|++++|++|++. +.|++.++|+++...+..+|. .++|.||+.|+|++.
T Consensus 375 --------------~~~~ll~~v~~~G~~~~~~~~l~eir~~~~~~l~~l~~~~~~l~~p~~y~v~~s 428 (443)
T PRK12484 375 --------------GREPLLVPVMTNGRRIQHAPTLDGARDWCEAQLAALPPEARRLVDPVAVSVTLS 428 (443)
T ss_pred --------------cccchhhhheECCEEeCCCCCHHHHHHHHHHHHHhCCHHHHhccCCccceeeeC
Confidence 1157999999999985 699999999999999999998 999999999999864
No 5
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
Probab=100.00 E-value=7.7e-37 Score=281.21 Aligned_cols=169 Identities=63% Similarity=0.935 Sum_probs=157.6
Q ss_pred cCchHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCce
Q 026886 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (231)
Q Consensus 2 ~SGvpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~i 81 (231)
+||++|+++|+.+|... |||+|||||+|+|+++|+.+-++...+. +.+..+-+.+||+++|++|..|.+||+++
T Consensus 252 ~~~~~nf~Av~lal~~~-----GvR~DSGdl~~~skkvr~~y~~v~~~~K-~~~~~m~~~a~N~~ne~ti~~lnkq~~e~ 325 (420)
T KOG2511|consen 252 LKSFPNFCAVALALNDL-----GVRQDSGDLAEYSKKVRKHYCDVERDPK-PSKGIMYSDALNVLNEITIDALNKQGGEV 325 (420)
T ss_pred HhcCCccchhhhhhhhc-----ceeccCCCHHHHHHHHHHHHHHhhccCC-CcceEEEEecccchhHHHHHHHHhcCCce
Confidence 68999999999999766 5999999999999999999999866555 67888889999999999999999999999
Q ss_pred eEEeecCcccccCCCCcceeEEEEeEECCcceeeccCCCCcCCCCCcceeeeecCCCCCceeeEEecCCCCCCCCCccee
Q 026886 82 DAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERIL 161 (231)
Q Consensus 82 d~fGVGT~Lvt~~~~p~l~~VyKLve~~g~P~~KlS~~~~K~t~PG~K~v~R~~~~~g~~~~D~i~l~~e~~~~~~~~l~ 161 (231)
|+|||||+|+|| .|+ +.+| ||+|+|+.|.|+||.|.+||+++++|.++.|++.+++|++|..|+.++
T Consensus 326 ~aFGIGTnl~t~-~q~-----------~sqP-iKLseDvtkvSiP~~K~~~RLfg~eG~plvdi~~~~~ep~p~~gq~l~ 392 (420)
T KOG2511|consen 326 DAFGIGTNLTTD-FQK-----------NSQP-IKLSEDVTKVSIPGNKIVIRLFGKEGYPLVDISDLENEPPPDPGQVLR 392 (420)
T ss_pred eeeccccccccc-ccc-----------ccCC-cccccccceeccccchhheehhccCCchhhhHhhccCCCCCCCCceEE
Confidence 999999999999 465 7799 999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCceeeecCccceecccccccCC
Q 026886 162 CRHPFNESKRAYVVPQKVEELLKCYWPGS 190 (231)
Q Consensus 162 ~~~p~~~~~~~~~~~~~~~~Ll~~~~~~g 190 (231)
|+||+. .+++++.|..+++|++.+|+.|
T Consensus 393 ~khp~~-~~~~~vip~~ve~llk~~w~~~ 420 (420)
T KOG2511|consen 393 VKHPLN-SKRAYVIPQRVEELLKCYWRAG 420 (420)
T ss_pred eecccc-ccccccchhhhHHHHHHHhccC
Confidence 999998 7888888999999999999854
No 6
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=100.00 E-value=4.3e-33 Score=261.00 Aligned_cols=112 Identities=29% Similarity=0.336 Sum_probs=103.3
Q ss_pred chHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCC-CCeE-EEEeCCCCHHHHHHHHh--cCC
Q 026886 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF-EKMS-ITASNDLNEETLDALNK--QGH 79 (231)
Q Consensus 4 Gvpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~-~~v~-Iv~S~~Lde~~I~~L~~--~ga 79 (231)
|.++|++++.++ ++.++.|||+|||||++|++++|++||++ |+ +++| |+|||||||++|.+|.+ +|+
T Consensus 258 ~t~~f~~~~~~~--~~~~~~GvR~DSGD~~~~~~k~r~~~~~~-------Gi~p~~K~iv~Sd~Lde~~i~~L~~~~~g~ 328 (377)
T cd01401 258 GTDAFLRDFDLY--FAKLFDGVRHDSGDPFEWGEKAIAHYEKL-------GIDPKTKTLVFSDGLDVEKALELYEYFKGR 328 (377)
T ss_pred CCHHHHHHHHHH--hcccCCEEeeCCCCHHHHHHHHHHHHHHc-------CCCCCCcEEEEcCCCCHHHHHHHHHHHcCC
Confidence 458999998874 46778999999999999999999999997 54 5666 99999999999999999 899
Q ss_pred ceeEEeecCcccccCC----CCcceeEEEEeEECCcceeeccCCCCcCC
Q 026886 80 EVDAFGIGTYLVTCYA----QAALGCVFKLVEINKQPRIKLSEDVSKVS 124 (231)
Q Consensus 80 ~id~fGVGT~Lvt~~~----~p~l~~VyKLve~~g~P~~KlS~~~~K~t 124 (231)
++|+|||||+|+|+.+ +|+||+|||||++||+|++|+||+++|+|
T Consensus 329 ~~~~FGIGT~L~~d~~~~~~~~pl~~V~KLv~~~g~P~~KlSd~~~K~t 377 (377)
T cd01401 329 IKVSFGIGTNLTNDFGNKEKSTPLNIVIKLVECNGRPVAKISDSPGKNM 377 (377)
T ss_pred cceeEecCcceecCCCcccCCCCcceEEEEEEECCcceeEecCCCccCC
Confidence 9999999999999988 89999999999999999999999999986
No 7
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=8.8e-33 Score=260.94 Aligned_cols=159 Identities=31% Similarity=0.355 Sum_probs=135.9
Q ss_pred cCchHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCc
Q 026886 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHE 80 (231)
Q Consensus 2 ~SGvpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~ 80 (231)
.+|++|++.+++++.+ .++.|||+||||+.++++++|++||+. |++.++|++| |++||..|+.|+.+|.+
T Consensus 246 ~~~~~~~~~~~~~~~~--~~~~GVR~DSGd~~~~~~kvr~~ld~~-------G~~~~~Ii~Sdg~lde~~i~~l~~~g~~ 316 (405)
T COG1488 246 DDAFLNAIKVAKALGD--KRLDGVRLDSGDPRELSEKVRAHLDKL-------GYDPVKIIVSDGLLDEKIIALLRAFGAR 316 (405)
T ss_pred hHHHHHhHHHHHhccc--ccceEEECCCCCHHHHHHHHHHHHHHc-------CCCceEEEEeCCcchHHHHHHHHHhCCC
Confidence 3689999999998843 479999999999999999999999998 9999999999 99999999999999999
Q ss_pred eeEEeecCcccccCCCCcceeEEEEeEECCcceeeccCCCCcCCCCCcceeeeecCCCCCceeeEEecCCCCCCCCCcce
Q 026886 81 VDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERI 160 (231)
Q Consensus 81 id~fGVGT~Lvt~~~~p~l~~VyKLve~~g~P~~KlS~~~~K~t~PG~K~v~R~~~~~g~~~~D~i~l~~e~~~~~~~~l 160 (231)
+|+|||||+|+|+.+.|++++|||||++||+|++|+|++ ||.|++||.++... +.....++.
T Consensus 317 ~d~FGvGT~L~~~~~~~~~~~v~Klvev~g~p~~Kis~~------Pgkk~~~r~~~~~~----~~~~~~~~~-------- 378 (405)
T COG1488 317 NDAFGVGTNLTTAKPRPPLDIVYKLVEVNGKPVAKISKN------PGKKQVYRSAFVRE----LLVVFGDEI-------- 378 (405)
T ss_pred ccEeccchhhccCCCCCcceeEEEEEEECCccceeecCC------Cccceeecchhhhh----hheeccccc--------
Confidence 999999999999999999999999999999999999985 89999999875111 111111110
Q ss_pred eecCCCCCCceeeecCccceecccccccCCcccCCCChhhHHHHHh
Q 026886 161 LCRHPFNESKRAYVVPQKVEELLKCYWPGSSGGDYPMVFGDVQFLS 206 (231)
Q Consensus 161 ~~~~p~~~~~~~~~~~~~~~~Ll~~~~~~g~~~~~P~~~s~r~~~~ 206 (231)
..++|+++++++|..++ ++.++|+++.
T Consensus 379 -----------------~~~~l~~~~~~~G~~~~--~l~~ir~~~~ 405 (405)
T COG1488 379 -----------------TYEPLLVKVFENGLLYD--SLDEIRERAL 405 (405)
T ss_pred -----------------cchhHHHHHHhCCeecC--CHHHHHHhhC
Confidence 00799999999995567 9999999863
No 8
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=99.98 E-value=2.8e-32 Score=257.22 Aligned_cols=120 Identities=27% Similarity=0.288 Sum_probs=104.9
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhc--CCcee
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQ--GHEVD 82 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~--ga~id 82 (231)
..+|++++.+. ++.++.|||||||||++|++++|++||++ |+++.++ +|++||||||++|.+|.++ +.++|
T Consensus 262 t~~fl~~f~~~--~~~~~~GvRlDSGD~~~~~~k~~~~~~~~----G~dp~~k-~Iv~S~~Lde~~i~~L~~~~~~~i~~ 334 (400)
T PRK05321 262 MDAFLRDFDLY--FAKLFDGLRHDSGDPIEWGEKAIAHYEKL----GIDPRTK-TLVFSDGLDFDKALELYRHFKGRIKL 334 (400)
T ss_pred cHHHHHHHHHH--hcccCCEEeeCCCCHHHHHHHHHHHHHHc----CCCCCCe-EEEEeCCCCHHHHHHHHHHhcCCCcc
Confidence 45777775332 47789999999999999999999999985 5555444 8999999999999999987 55677
Q ss_pred EEeecCcccccC-CCCcceeEEEEeEECCcceeeccCCCCcCCCCCccee
Q 026886 83 AFGIGTYLVTCY-AQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRS 131 (231)
Q Consensus 83 ~fGVGT~Lvt~~-~~p~l~~VyKLve~~g~P~~KlS~~~~K~t~PG~K~v 131 (231)
+|||||+|+|+. ++|+||+|||||++||+|+||+|++++|+|+|...-+
T Consensus 335 ~fGIGT~Lt~~~~~~p~l~~V~KLv~~~g~P~~KlSd~~~K~t~p~~~~~ 384 (400)
T PRK05321 335 SFGIGTNLTNDFPGVKPLNIVIKLVECNGRPVAKLSDSPGKTMCDDPEFL 384 (400)
T ss_pred eEecCcceecCCCCCCCcceEEEEEEECCeeeEEecCCCcccCCCCHHHH
Confidence 999999999999 8999999999999999999999999999999876543
No 9
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=99.97 E-value=9.5e-32 Score=253.08 Aligned_cols=114 Identities=30% Similarity=0.335 Sum_probs=102.8
Q ss_pred chHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeE-EEEeCCCCHHHHHHHHh--cCCc
Q 026886 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMS-ITASNDLNEETLDALNK--QGHE 80 (231)
Q Consensus 4 Gvpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~-Iv~S~~Lde~~I~~L~~--~ga~ 80 (231)
+.++|++++.++. +..+.|||||||||.+|++++|++|+++ ||+ +++| |++||||||++|.+|.+ +|++
T Consensus 261 ~t~~f~~~~~~~~--~~~~~GvR~DSGD~~~~~~~~~~~~~~~----gid--p~~K~iv~Sd~Lde~~i~~L~~~~~g~~ 332 (394)
T TIGR01514 261 TTDAFLRDFRPPF--ADAYDGLRHDSGDPVEWGDKAIAHYQKL----GID--PKSKIIIFSDSLDVEKAIELSHYFKGRV 332 (394)
T ss_pred CCHHHHHHHHHHh--cccCCEEecCCCCHHHHHHHHHHHHHHc----CCC--CCCcEEEEcCCCCHHHHHHHHHHhcCCC
Confidence 4589999986643 3456999999999999999999999996 443 5666 78899999999999999 8999
Q ss_pred eeEEeecCcccccCC-CCcceeEEEEeEECCcceeeccCCCCcCCC
Q 026886 81 VDAFGIGTYLVTCYA-QAALGCVFKLVEINKQPRIKLSEDVSKVSI 125 (231)
Q Consensus 81 id~fGVGT~Lvt~~~-~p~l~~VyKLve~~g~P~~KlS~~~~K~t~ 125 (231)
+|+|||||+|+|+.+ +|+||+|||||+++|+|+||+|++++|+|+
T Consensus 333 ~d~FGVGT~l~~d~~~~~~l~~V~Klv~~~g~P~~KlSd~~~K~t~ 378 (394)
T TIGR01514 333 KASFGIGTNLTNDFGKVEPLNIVIKLVECNGNPVAKLSDSPGKTMG 378 (394)
T ss_pred ceeEecCcceecCCCCCCCcceEEEEEEECCccceEecCCCcccCC
Confidence 999999999999998 999999999999999999999999999996
No 10
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=99.97 E-value=5.2e-30 Score=245.38 Aligned_cols=170 Identities=17% Similarity=0.217 Sum_probs=139.1
Q ss_pred chHHHHHHHHHHHh----cCCCccEEEeCCCChHHHHHHHHHHHHHH-HHhhCCCCC----CCeEEEEeCCCCHHHHHH-
Q 026886 4 GVPNFCAVALALND----LGYKAVGIRLDSGDLAYLSCEARKFFRTI-EKEFGVPDF----EKMSITASNDLNEETLDA- 73 (231)
Q Consensus 4 Gvpnai~Va~~L~~----~g~~~~GVRlDSGDl~~ls~~~R~~ld~~-~~~l~i~g~----~~v~Iv~S~~Lde~~I~~- 73 (231)
||+|+ ++++|++ .|.++ |||+|||||.++++++|++|+++ +-+++..|+ ++++|++||||||++|.+
T Consensus 270 ~i~~i--~~~~L~~~i~~~~~~l-~VR~DSGD~~~i~~~vr~~L~e~fG~t~n~kGykvL~~~v~Ii~s~glde~~i~~i 346 (463)
T PRK09198 270 AITEP--WGGELKDEILARGGTL-VIRPDSGDPVTIICGTLELLDEIFGGTVNSKGYKVLNPHVGVIQGDGITLDSIEAI 346 (463)
T ss_pred HHHHH--HHHHHhhhhhccCCcE-EEECCCCCHHHHHHHHHHHHHHhhCcccccCcccccCCCeEEEEeCCCCHHHHHHH
Confidence 78884 4455543 56777 99999999999999999999996 334455586 399999999999999999
Q ss_pred ---HHhcCCcee--EEeecCcccccCCCCcceeEEEEeEE--CCc--ceee---ccCCCCcCCCCCcceeeeecCCCCCc
Q 026886 74 ---LNKQGHEVD--AFGIGTYLVTCYAQAALGCVFKLVEI--NKQ--PRIK---LSEDVSKVSIPCKKRSYRLYGKEGYP 141 (231)
Q Consensus 74 ---L~~~ga~id--~fGVGT~Lvt~~~~p~l~~VyKLve~--~g~--P~~K---lS~~~~K~t~PG~K~v~R~~~~~g~~ 141 (231)
|.++|+++| +|||||+|.++.++|++++|||++++ ||+ |++| .|. +|.|.||+|+|||. +|.
T Consensus 347 l~~l~~~G~~~dni~FGvGt~l~~~~~r~t~~~a~Kl~~~~~~G~~~~v~K~P~t~~--gK~S~~G~k~v~r~---~~~- 420 (463)
T PRK09198 347 LEALKAKGFAAENIVFGMGGALLQYVNRDTQGFAMKASAIEVNGEWRDIFKDPITDQ--GKKSKKGRLKLIKD---NGE- 420 (463)
T ss_pred HHHHHhCCCccccceEecCcccccCCCCCccCceEEEEEEeeCCccceeeccCcCCC--CCcCccceeEEEEc---CCc-
Confidence 778899999 99999999999999999999999955 664 9998 555 79999999999997 343
Q ss_pred eeeEEecCCCCCCCCCcceeecCCCCCCceeeecCccceecccccccCCcccCCCChhhHHHHHhh
Q 026886 142 LVDIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSGGDYPMVFGDVQFLST 207 (231)
Q Consensus 142 ~~D~i~l~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~Ll~~~~~~g~~~~~P~~~s~r~~~~~ 207 (231)
.|.+.+.++. + .-++||+++|++|++..-+++.++|+++..
T Consensus 421 -~~~v~~~~~~-~-----------------------~~~~lL~~v~~~G~l~~~~~l~eiR~r~~~ 461 (463)
T PRK09198 421 -YRTVDLDEAG-D-----------------------ENDDLLQTVFENGKLLVEYSLAEIRARLHA 461 (463)
T ss_pred -ceEEeccccC-C-----------------------CccchhhhheeCCEECCCCCHHHHHHHHhh
Confidence 3666665542 1 124799999999999655679999998764
No 11
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2.4.2.11 from EC) is the rate-limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also contains a number of closely related proteins for which a catalytic activity has not been experimentally demonstrated.; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm; PDB: 3OS4_B 1VLP_C 2F7F_A 1YIR_D 1YBE_B 2H3D_A 2H3B_B 2GVL_B 2IM5_B 2G96_B ....
Probab=99.97 E-value=2.9e-31 Score=235.18 Aligned_cols=131 Identities=40% Similarity=0.538 Sum_probs=114.4
Q ss_pred cCchHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCC---CCeEEEEeCCCCHHHHHHHHhcC
Q 026886 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF---EKMSITASNDLNEETLDALNKQG 78 (231)
Q Consensus 2 ~SGvpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~---~~v~Iv~S~~Lde~~I~~L~~~g 78 (231)
.++++++|.+...+++++ ++.|||+|||||.++++++|++|+++ .|++|+ .+++|++||+|||++|.+|.+++
T Consensus 94 ~~~L~~~i~~~~~~~~~~-~~~gvR~DSGD~~~~~~~~r~~f~~~---~~~~g~kvl~~~~Ii~Sd~Lde~~i~~l~~~~ 169 (245)
T PF04095_consen 94 GIALKDAIGTRGFLKDFG-RFLGVRPDSGDPAELSEKLRKIFDEA---VGIKGYKVLPSKKIIASDGLDEEKIEELLEQG 169 (245)
T ss_dssp CEEEHHHHTHHHHHHCSS-HSEEEEE-SS-HHHHHHHHHHHHHHT---ETTTGGEE-TCSEEEEESS-SHHHHHHHHHHH
T ss_pred ccccchheeccchhcccc-cceeeecCCCChHHHHHHHHHHHHHH---hCCCCccccceEEEEEeCCCCHHHHHHHHHHh
Confidence 468999999999998887 78999999999999999999999996 577776 67799999999999999999999
Q ss_pred Cc---eeEEeecCcccccCCC---------CcceeEEEEeEECCcceeeccCCCCcCCC---CCcceeeeecC
Q 026886 79 HE---VDAFGIGTYLVTCYAQ---------AALGCVFKLVEINKQPRIKLSEDVSKVSI---PCKKRSYRLYG 136 (231)
Q Consensus 79 a~---id~fGVGT~Lvt~~~~---------p~l~~VyKLve~~g~P~~KlS~~~~K~t~---PG~K~v~R~~~ 136 (231)
++ +++|||||+|+||.++ |++++|||+++++|+|++|+|++++|.|+ ++.+.+.|+|+
T Consensus 170 ~~~g~~~~fGVGT~L~t~~~~~~~~~~~K~~~l~~v~Klv~~~~~P~~K~S~~~~K~t~~~~~~~~~~k~vf~ 242 (245)
T PF04095_consen 170 AEKGFNDSFGVGTNLVTDFDRPTLGFVYKLPALNIVGKLVEINGQPVIKLSDDSEKGTCGDPEGIKYLKRVFE 242 (245)
T ss_dssp CCTTSEEEEEESHHHHSSCTTTTTTEEEEEEEEEEEEEEEEETTEETTBGGSSTTGSSGGGHHHHHHHHHHEC
T ss_pred hcccceeEeecCchheeeCCCCccCceeccccceeCCeEEEeCCCCCccCCCCCCCCcCCCHHHHHHHHHHhC
Confidence 99 9999999999999999 88888888999999999999999999993 34555555553
No 12
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=99.96 E-value=2.5e-29 Score=240.93 Aligned_cols=175 Identities=21% Similarity=0.243 Sum_probs=136.9
Q ss_pred chHHHH-HHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHH-HHhhCCCCC----CCeEEEEeCCCCHHHHHH----
Q 026886 4 GVPNFC-AVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTI-EKEFGVPDF----EKMSITASNDLNEETLDA---- 73 (231)
Q Consensus 4 Gvpnai-~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~-~~~l~i~g~----~~v~Iv~S~~Lde~~I~~---- 73 (231)
||+|++ +|+.++.+.|.++ |||+|||||++++++++++|.+. +-.++-.|+ ++++|++||||||++|++
T Consensus 276 ~v~~~i~~l~~~i~~~~~~l-~IR~DSGD~~~l~~~~~~~L~~~FG~~ln~~G~kvL~~~v~Ii~gd~ide~~i~~il~~ 354 (470)
T PHA02594 276 AVTEILPELKDEIMARGGKL-VIRPDSGDPVDIICGALETLGEIFGGTVNSKGYKVLDEHVRLIQGDGITLERINRILTR 354 (470)
T ss_pred HHHHHHHHHHHHHHhCCCcE-EEeCCCCCHHHHHHHHHHHHHHhcCCcccCccccccCCCeEEEEcCCCCHHHHHHHHHH
Confidence 899999 9999987778777 99999999999999999999321 111112288 999999999999999999
Q ss_pred HHhcC--CceeEEeecCcccccCCCCcceeEEEEeEE--CCc--ceeec-cCCCCcCCCCCcceeeeecCCCCCc-eeeE
Q 026886 74 LNKQG--HEVDAFGIGTYLVTCYAQAALGCVFKLVEI--NKQ--PRIKL-SEDVSKVSIPCKKRSYRLYGKEGYP-LVDI 145 (231)
Q Consensus 74 L~~~g--a~id~fGVGT~Lvt~~~~p~l~~VyKLve~--~g~--P~~Kl-S~~~~K~t~PG~K~v~R~~~~~g~~-~~D~ 145 (231)
|.++| +++++|||||+|+|+.++|.+++||||+++ +|+ |++|- =.+++|.|.||+|+ |.++ +|.. ..|.
T Consensus 355 L~~~G~~a~n~~fGvGt~l~q~~~rdt~g~ayKl~~~~~~G~~~~~~K~Pktd~gK~S~~Gr~~--~~~~-~g~~~~~~~ 431 (470)
T PHA02594 355 MKENGFASENVAFGMGGGLLQMVTRDTFKFAMKATAIKINGKWKGVFKNPKTDEGKKSKKGRLA--RVKD-GGSFKTVDG 431 (470)
T ss_pred HHHCCCCCCcceEecCccceecCCCcccCceEEEEEEecCCceeeeeccCcCCCCCccccceeE--EEEc-CCceeEeee
Confidence 55789 456699999999999999999999999977 475 55754 22458999999999 5555 4643 3344
Q ss_pred EecCCCCCCCCCcceeecCCCCCCceeeecCccceecccccccCCcccCCCChhhHHHHHhh
Q 026886 146 MTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSGGDYPMVFGDVQFLST 207 (231)
Q Consensus 146 i~l~~e~~~~~~~~l~~~~p~~~~~~~~~~~~~~~~Ll~~~~~~g~~~~~P~~~s~r~~~~~ 207 (231)
+ .+|. + ...++||+++|++|+...-+++.++|+.++.
T Consensus 432 ~--~~e~-~----------------------~~~~~lL~~v~~~G~~~~~~sl~eiR~r~~~ 468 (470)
T PHA02594 432 L--EEQS-E----------------------ADLNDALVTYFDDGKLVRYQSLAEIRERSDI 468 (470)
T ss_pred c--cccc-c----------------------ccccchhheeeECCEECCCCCHHHHHHHHHh
Confidence 3 2221 1 0124699999999999644899999998864
No 13
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=99.94 E-value=3.4e-27 Score=217.23 Aligned_cols=98 Identities=60% Similarity=0.873 Sum_probs=94.8
Q ss_pred cCchHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCce
Q 026886 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (231)
Q Consensus 2 ~SGvpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~i 81 (231)
+||+++|++++++|.+.|.++.|||+|||||.++++++|++||+. |+++++|++||||||++|.+|.++|+++
T Consensus 230 ~~~~~~~l~~~~~l~~~~~~~~gvR~DSGd~~~~~~~~r~~l~~~-------G~~~~~Iv~Sdgld~~~i~~l~~~g~~~ 302 (327)
T cd01570 230 RSGLPNAIAVAKELGALGYRLVGVRIDSGDLAYLSKEARKMLDEA-------GLTKVKIVASNDLDEYTIAALNAQGAPI 302 (327)
T ss_pred hhhHHHHHHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHHHHHC-------CCCCcEEEEeCCCCHHHHHHHHHCCCee
Confidence 479999999999998889999999999999999999999999998 8888999999999999999999999999
Q ss_pred eEEeecCcccccCCCCcceeEEEEe
Q 026886 82 DAFGIGTYLVTCYAQAALGCVFKLV 106 (231)
Q Consensus 82 d~fGVGT~Lvt~~~~p~l~~VyKLv 106 (231)
|+|||||+|+|+.++|++++|||||
T Consensus 303 d~fGvGt~L~~~~~~~~l~~v~Klv 327 (327)
T cd01570 303 DAFGVGTRLVTSQSQPALGGVYKLV 327 (327)
T ss_pred EEEecCccccCCCCCcccCeeEecC
Confidence 9999999999999999999999996
No 14
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=99.92 E-value=1.6e-24 Score=201.73 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=95.1
Q ss_pred CchHHHHHHHHHHHhcCCCccEEEeCC-CCh---------------------HHHHHHHHHHHHHHHHhhCCCCCCCeEE
Q 026886 3 SGVPNFCAVALALNDLGYKAVGIRLDS-GDL---------------------AYLSCEARKFFRTIEKEFGVPDFEKMSI 60 (231)
Q Consensus 3 SGvpnai~Va~~L~~~g~~~~GVRlDS-GDl---------------------~~ls~~~R~~ld~~~~~l~i~g~~~v~I 60 (231)
..+.+|++||++| |.++.|||||| ||+ .++++++|+.||++ |+++++|
T Consensus 214 d~~~~al~~a~~~---g~~l~gVRlDs~gdl~DK~~~~~~~~~~~~~~~G~~~~l~~~vr~~Ld~~-------g~~~vkI 283 (352)
T PRK07188 214 DVITDSLKVAREF---GDKLKGVRVDTSKNMIDKYFIRHPEVLGTFDPRGVNPELIKALRKALDEN-------GGKHVKI 283 (352)
T ss_pred ccHHHHHHHHHHh---CCCccEEEeCCcchHhhhhcccccccccccccccccHHHHHHHHHHHhhC-------CCCCcEE
Confidence 4788999998886 89999999999 575 99999999999998 9999999
Q ss_pred EEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCcceeEEEEeEECCcceeeccC
Q 026886 61 TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSE 118 (231)
Q Consensus 61 v~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~VyKLve~~g~P~~KlS~ 118 (231)
++||||||+.|++|.++|+|||+|||||+|+|++ .+++.|+|++||+|++|++.
T Consensus 284 ~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~~----~~~t~d~v~~~g~p~aK~Gr 337 (352)
T PRK07188 284 IVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKIN----IGFTGDAVELNGKKEAKAGR 337 (352)
T ss_pred EEeCCCCHHHHHHHHHcCCCccEEecCcccccCc----ccceeeEEEECCEeecccCC
Confidence 9999999999999999999999999999999975 78888999999999999977
No 15
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=99.87 E-value=5.1e-22 Score=187.83 Aligned_cols=109 Identities=22% Similarity=0.322 Sum_probs=95.7
Q ss_pred chHHHHHHHHH-HHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCC----CC---C-CCeEEEEeCCCCHHHHHH-
Q 026886 4 GVPNFCAVALA-LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGV----PD---F-EKMSITASNDLNEETLDA- 73 (231)
Q Consensus 4 Gvpnai~Va~~-L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i----~g---~-~~v~Iv~S~~Lde~~I~~- 73 (231)
+++|++.++++ +.+.|.++ |||+|||||.++++++|++|+++ ||- .| + ++++|++||+|||++|++
T Consensus 268 ~~~~~~~~lk~~i~~~g~~l-viRpDSGD~~~l~~~~~~~L~~~---FG~~~n~kGykvl~~~v~Ii~gd~ide~~i~~I 343 (407)
T cd01569 268 ALTLWGPRLKDEILARGGTL-VIRPDSGDPVDIICGVLEILGEI---FGGTVNSKGYKVLNPHVRIIQGDGITLERIEEI 343 (407)
T ss_pred HHHHHHHHHHHHHHhcCCcE-EEECCCCCHHHHHHHHHHHHHHH---hCCcccCCcccccCCceEEEEcCCCCHHHHHHH
Confidence 38999999998 45677777 99999999999999999999995 322 25 4 599999999999999995
Q ss_pred ---HHhcCCcee--EEeecCcccccCCCCcceeEEEEeEE--CCc--ceeec
Q 026886 74 ---LNKQGHEVD--AFGIGTYLVTCYAQAALGCVFKLVEI--NKQ--PRIKL 116 (231)
Q Consensus 74 ---L~~~ga~id--~fGVGT~Lvt~~~~p~l~~VyKLve~--~g~--P~~Kl 116 (231)
|.++|+++| +|||||+|.|+.++|.+++|||++++ ||+ |++|-
T Consensus 344 l~~L~~~G~~~dNi~fGvGt~l~q~~~rdt~~~ayK~~~~~~~g~~~~v~K~ 395 (407)
T cd01569 344 LERLKAKGFASENIVFGMGGGLLQKVTRDTQGFAMKASAIEINGKWRDVFKD 395 (407)
T ss_pred HHHHHHCCCccccceEecCccceecCCCcccCceeEEEEEecCCeeeeeeeC
Confidence 888999999 99999999999999999999999988 454 88876
No 16
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.85 E-value=4.1e-21 Score=176.85 Aligned_cols=93 Identities=40% Similarity=0.559 Sum_probs=87.7
Q ss_pred chHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCC--CCeEEEEeCCCC-HHHHHHHHhcCC-
Q 026886 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF--EKMSITASNDLN-EETLDALNKQGH- 79 (231)
Q Consensus 4 Gvpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~--~~v~Iv~S~~Ld-e~~I~~L~~~ga- 79 (231)
|+.+++++++++.+ +.++.|||+||||+.++++++|++||++ |. .+++|++||||| |++|+.+..+++
T Consensus 247 ~~~~~~~~~~~~~~-~~~~~gvR~DSGd~~~~~~~~~~~l~~~-------g~~~~~~~ii~sg~l~~~~~i~~~~~~~~~ 318 (343)
T cd01567 247 GFLNALKLAKALGA-GGGLLGVRLDSGDPVELIKKVRKHLDEL-------GIDLNKKKIIISGDLDTEEAIELLLEQGAS 318 (343)
T ss_pred HHHHHHHHHHhhcc-cCCCcEEECCCCCHHHHHHHHHHHHHHc-------CCCCCCeEEEEECCCCHHHHHHHHHHcCCC
Confidence 78999999999866 5788999999999999999999999997 77 888999999999 999999999888
Q ss_pred ceeEEeecCcccccCCCCcceeEEE
Q 026886 80 EVDAFGIGTYLVTCYAQAALGCVFK 104 (231)
Q Consensus 80 ~id~fGVGT~Lvt~~~~p~l~~VyK 104 (231)
++|+|||||+|+++.++|++++|||
T Consensus 319 ~~~~fGvGt~l~~~~~~~~l~~v~K 343 (343)
T cd01567 319 PNDAFGVGTSLTNDLGRPPLGFVYK 343 (343)
T ss_pred cCcEEeeCcccccCCCCCccCeeeC
Confidence 9999999999999999999999998
No 17
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=99.79 E-value=5.9e-19 Score=163.93 Aligned_cols=112 Identities=27% Similarity=0.391 Sum_probs=99.8
Q ss_pred chHHHHHHHHHHHhcCCCccEEEeCC-----CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcC
Q 026886 4 GVPNFCAVALALNDLGYKAVGIRLDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG 78 (231)
Q Consensus 4 Gvpnai~Va~~L~~~g~~~~GVRlDS-----GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~g 78 (231)
.+..|++++.+ .|+.++|||+|| ||+.++++++|+++|+. |+++++|.+|||||++.|.++.+.
T Consensus 213 ~~~~Al~~~~~---~~~~~d~I~LDn~~~~~g~l~~~v~~vr~~ld~~-------g~~~v~IeaSGgI~~~ni~~ya~~- 281 (343)
T PRK08662 213 EREEALRAAEA---LGDRLDGVRLDTPSSRRGNFRKIVREVRWTLDIR-------GYEHVKIFVSGGLDPERIRELRDV- 281 (343)
T ss_pred cHHHHHHHHHH---hCCcCCEEEcCCCCCCCccHHHHHHHHHHHHHhc-------CCCCeEEEEeCCCCHHHHHHHHHh-
Confidence 46778887776 378899999999 99999999999999997 788899999999999999999987
Q ss_pred CceeEEeecCcccccCCCCcceeEEEEeEECCcceeeccCCCCcCCCCCccee
Q 026886 79 HEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRS 131 (231)
Q Consensus 79 a~id~fGVGT~Lvt~~~~p~l~~VyKLve~~g~P~~KlS~~~~K~t~PG~K~v 131 (231)
+|.|||||.+.+ +|++++++|++++||+|++|+|+.+||..+|-.+++
T Consensus 282 --vD~isvGs~~~~---a~~lDis~~iv~~~g~~~~K~~~~~g~~~~~~~~~~ 329 (343)
T PRK08662 282 --VDGFGVGTYISF---APPVDFSMDIVEVEGKPIAKRGKLPGIKQVPRLKEI 329 (343)
T ss_pred --CCEEEcCccccC---CCccceEEEEEEECCeeeEeecCCcccccCCCHHHH
Confidence 999999999976 689999999999999999999987777777666554
No 18
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.72 E-value=5.8e-17 Score=148.11 Aligned_cols=100 Identities=34% Similarity=0.493 Sum_probs=91.5
Q ss_pred chHHHHHHHHHHHhcCCCccEEEeCC-----CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcC
Q 026886 4 GVPNFCAVALALNDLGYKAVGIRLDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG 78 (231)
Q Consensus 4 Gvpnai~Va~~L~~~g~~~~GVRlDS-----GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~g 78 (231)
.+++|+++++++ ++++++||+|| ||+.++.+++|+.+++. |+++++|.+|||||++.|.++.+.|
T Consensus 197 ~v~eal~~~~~~---~~~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~~-------g~~~~~ieaSGgI~~~~i~~~a~~g 266 (302)
T cd01571 197 EKEEALKAAKAL---GDKLDGVRLDTPSSRRGVFRYLIREVRWALDIR-------GYKHVKIFVSGGLDEEDIKELEDVG 266 (302)
T ss_pred chHHHHHHHHHh---CCCCcEEEECCCCCCCCCHHHHHHHHHHHHHhC-------CCCCeEEEEeCCCCHHHHHHHHHcC
Confidence 577888888764 57799999999 99999999999999997 7788999999999999999999999
Q ss_pred CceeEEeecCcccccCCCCcceeEEEEeEECCcceeeccC
Q 026886 79 HEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSE 118 (231)
Q Consensus 79 a~id~fGVGT~Lvt~~~~p~l~~VyKLve~~g~P~~KlS~ 118 (231)
+|.|||||.+.+ +|++++++|++++||+|++|++.
T Consensus 267 --vD~isvGs~~~~---~~~~D~s~~iv~~~g~~~~K~gr 301 (302)
T cd01571 267 --VDAFGVGTAISK---APPVDFTMDIVEVNGQPIAKRGK 301 (302)
T ss_pred --CCEEECCcccCC---CCCCCEEEEEEEECCeeeeccCC
Confidence 999999999865 68999999999999999999953
No 19
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=99.29 E-value=9.7e-12 Score=110.99 Aligned_cols=83 Identities=41% Similarity=0.568 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCC-----ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSG-----DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSG-----Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga 79 (231)
+.++++++.+ | +++|||+||| +++.+..+.+++||.. ++++++|++|||+|++.|.++.+.|
T Consensus 194 ~~~~~~~~~~----~-~~d~irlDs~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~Sggi~~~~i~~~~~~g- 260 (281)
T cd00516 194 LEEALEAAKA----G-GADGIRLDSGSPEELDPAVLILKARAHLDGK-------GLPRVKIEASGGLDEENIRAYAETG- 260 (281)
T ss_pred HHHHHHHHhc----C-CCCEEEeCCCChHHHHHHHHHHHHHHhhhhc-------CCCceEEEEeCCCCHHHHHHHHHcC-
Confidence 4455555433 2 5899999999 8888888888888865 8899999999999999999999998
Q ss_pred ceeEEeecCcccccCCCCcceeEEE
Q 026886 80 EVDAFGIGTYLVTCYAQAALGCVFK 104 (231)
Q Consensus 80 ~id~fGVGT~Lvt~~~~p~l~~VyK 104 (231)
+|+|||||.+.++ |++++++|
T Consensus 261 -vd~~gvG~~~~~~---~~~di~~k 281 (281)
T cd00516 261 -VDVFGVGTLLHSA---PPLDIVLK 281 (281)
T ss_pred -CCEEEeCcccccC---cccCeEeC
Confidence 9999999999884 89999986
No 20
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=97.92 E-value=2.1e-05 Score=66.98 Aligned_cols=70 Identities=26% Similarity=0.288 Sum_probs=49.8
Q ss_pred CccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCcce
Q 026886 21 KAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 100 (231)
Q Consensus 21 ~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~ 100 (231)
.+++||+|..++..+ +++.+.+++. ..+++|.+|||+|++.|.++.+.| +|.+++|+-.-+ .|+++
T Consensus 100 g~d~I~lD~~~~~~~-~~~v~~l~~~--------~~~v~ie~SGGI~~~ni~~ya~~g--vD~isvg~~~~~---a~~~D 165 (169)
T PF01729_consen 100 GADIIMLDNMSPEDL-KEAVEELREL--------NPRVKIEASGGITLENIAEYAKTG--VDVISVGSLTHS---APPLD 165 (169)
T ss_dssp T-SEEEEES-CHHHH-HHHHHHHHHH--------TTTSEEEEESSSSTTTHHHHHHTT---SEEEECHHHHS---BE---
T ss_pred CCCEEEecCcCHHHH-HHHHHHHhhc--------CCcEEEEEECCCCHHHHHHHHhcC--CCEEEcChhhcC---CcccC
Confidence 478999999997444 4444444553 355999999999999999999999 899999976544 57888
Q ss_pred eEEE
Q 026886 101 CVFK 104 (231)
Q Consensus 101 ~VyK 104 (231)
+.+|
T Consensus 166 ~sl~ 169 (169)
T PF01729_consen 166 FSLD 169 (169)
T ss_dssp EEEE
T ss_pred cCcC
Confidence 8765
No 21
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.28 E-value=0.0022 Score=58.81 Aligned_cols=75 Identities=19% Similarity=0.266 Sum_probs=59.4
Q ss_pred CCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCC-CCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCc
Q 026886 20 YKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF-EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (231)
Q Consensus 20 ~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~-~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~ 98 (231)
...+.|++|.-++..+ +++.+.+++. ++ ++++|.+|||+|++.|.++.+.| +|.+.+|. ++++ .|+
T Consensus 201 agaDiI~LDn~~~e~l-~~~v~~l~~~-------~~~~~~~leaSGGI~~~ni~~yA~tG--vD~Is~ga-lt~s--a~~ 267 (278)
T PRK08385 201 AGADIIMLDNMTPEEI-REVIEALKRE-------GLRERVKIEVSGGITPENIEEYAKLD--VDVISLGA-LTHS--VRN 267 (278)
T ss_pred cCcCEEEECCCCHHHH-HHHHHHHHhc-------CcCCCEEEEEECCCCHHHHHHHHHcC--CCEEEeCh-hhcC--CCc
Confidence 3467999999986654 4556666664 43 47899999999999999999998 89999987 4443 689
Q ss_pred ceeEEEEeE
Q 026886 99 LGCVFKLVE 107 (231)
Q Consensus 99 l~~VyKLve 107 (231)
+++.+++++
T Consensus 268 ~Dis~~i~~ 276 (278)
T PRK08385 268 FDVSLEILK 276 (278)
T ss_pred cceEEEEec
Confidence 999998875
No 22
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.05 E-value=0.0037 Score=57.10 Aligned_cols=70 Identities=19% Similarity=0.283 Sum_probs=56.9
Q ss_pred ccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCccee
Q 026886 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (231)
Q Consensus 22 ~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~ 101 (231)
.+.|.+|.-++..+.+-++ ++.. +.++++|.+||++|++.+.++.+.| +|.+.+|+-. ++ +|++++
T Consensus 203 aDiI~LDn~~~e~l~~~v~-~~~~--------~~~~~~ieAsGgIt~~ni~~ya~~G--vD~IsvG~l~-~s--a~~~D~ 268 (273)
T PRK05848 203 ADIVMCDNMSVEEIKEVVA-YRNA--------NYPHVLLEASGNITLENINAYAKSG--VDAISSGSLI-HQ--ATWIDM 268 (273)
T ss_pred CCEEEECCCCHHHHHHHHH-Hhhc--------cCCCeEEEEECCCCHHHHHHHHHcC--CCEEEeChhh-cC--CCccce
Confidence 5799999999888876665 3332 5678999999999999999999999 7999999844 43 678888
Q ss_pred EEEE
Q 026886 102 VFKL 105 (231)
Q Consensus 102 VyKL 105 (231)
..++
T Consensus 269 sl~~ 272 (273)
T PRK05848 269 SMKM 272 (273)
T ss_pred eeec
Confidence 8765
No 23
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.50 E-value=0.012 Score=54.30 Aligned_cols=72 Identities=19% Similarity=0.129 Sum_probs=54.0
Q ss_pred CCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCc
Q 026886 19 GYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (231)
Q Consensus 19 g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~ 98 (231)
+...+.|++|--++..+.+ +.+++++ ..+++.|.+|||+|++.|.++.+.| +|.+.+|. ++++ .|+
T Consensus 217 ~~gaDiI~LDnm~~e~vk~-av~~~~~--------~~~~v~ieaSGGI~~~ni~~yA~tG--vD~Is~ga-lt~s--a~~ 282 (289)
T PRK07896 217 AEGAELVLLDNFPVWQTQE-AVQRRDA--------RAPTVLLESSGGLTLDTAAAYAETG--VDYLAVGA-LTHS--VPV 282 (289)
T ss_pred HcCCCEEEeCCCCHHHHHH-HHHHHhc--------cCCCEEEEEECCCCHHHHHHHHhcC--CCEEEeCh-hhcC--CCc
Confidence 4567899999888555433 3334444 2478899999999999999999999 89999997 4443 577
Q ss_pred ceeEEE
Q 026886 99 LGCVFK 104 (231)
Q Consensus 99 l~~VyK 104 (231)
+++.++
T Consensus 283 ~Disl~ 288 (289)
T PRK07896 283 LDIGLD 288 (289)
T ss_pred cccccc
Confidence 887654
No 24
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=96.17 E-value=0.033 Score=50.71 Aligned_cols=69 Identities=19% Similarity=0.126 Sum_probs=48.6
Q ss_pred ccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCccee
Q 026886 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (231)
Q Consensus 22 ~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~ 101 (231)
.+.|.+|.=++..+ +++.+.+.. .++++.|++|||++++.+.++.+.| +|.+ +.+.++. ++++++
T Consensus 204 aD~I~ld~~~p~~l-~~~~~~~~~--------~~~~i~i~AsGGI~~~ni~~~~~~G--vd~I-~vsai~~---a~~~D~ 268 (272)
T cd01573 204 ADILQLDKFSPEEL-AELVPKLRS--------LAPPVLLAAAGGINIENAAAYAAAG--ADIL-VTSAPYY---AKPADI 268 (272)
T ss_pred CCEEEECCCCHHHH-HHHHHHHhc--------cCCCceEEEECCCCHHHHHHHHHcC--CcEE-EEChhhc---Ccccce
Confidence 45777776555433 233333332 3457899999999999999999999 6788 6666754 678898
Q ss_pred EEEE
Q 026886 102 VFKL 105 (231)
Q Consensus 102 VyKL 105 (231)
..++
T Consensus 269 s~~~ 272 (272)
T cd01573 269 KVKI 272 (272)
T ss_pred EEeC
Confidence 7764
No 25
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.08 E-value=0.042 Score=50.36 Aligned_cols=45 Identities=29% Similarity=0.464 Sum_probs=38.4
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCcceeEEEE
Q 026886 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKL 105 (231)
Q Consensus 56 ~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~VyKL 105 (231)
.++.+++|||++++.+.++.+.| +|.+.+|. ++++ .|++++.+++
T Consensus 232 ~~i~leAsGGIt~~ni~~~a~tG--vD~Isvg~-lt~s--~~~~D~sl~~ 276 (277)
T PRK05742 232 GRAKLEASGGINESTLRVIAETG--VDYISIGA-MTKD--VKAVDLSMRL 276 (277)
T ss_pred CCCcEEEECCCCHHHHHHHHHcC--CCEEEECh-hhcC--Ccccceeeec
Confidence 37899999999999999999998 78888987 4443 6889998875
No 26
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.78 E-value=0.08 Score=48.84 Aligned_cols=73 Identities=23% Similarity=0.313 Sum_probs=54.7
Q ss_pred CCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCcc
Q 026886 20 YKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAAL 99 (231)
Q Consensus 20 ~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l 99 (231)
...+.|.+|--++..+.+-+ +++++ ...++.|.+|||+|++.|.++.+.| +|..-+|+-. ++ +|++
T Consensus 215 ~GaD~I~LDn~~~e~l~~av-~~~~~--------~~~~i~leAsGGIt~~ni~~ya~tG--vD~Isvgsl~-~s--a~~~ 280 (288)
T PRK07428 215 YGADIIMLDNMPVDLMQQAV-QLIRQ--------QNPRVKIEASGNITLETIRAVAETG--VDYISSSAPI-TR--SPWL 280 (288)
T ss_pred cCCCEEEECCCCHHHHHHHH-HHHHh--------cCCCeEEEEECCCCHHHHHHHHHcC--CCEEEEchhh-hC--CCcc
Confidence 44678888977765554333 23433 2467899999999999999999999 7888888744 32 6889
Q ss_pred eeEEEEe
Q 026886 100 GCVFKLV 106 (231)
Q Consensus 100 ~~VyKLv 106 (231)
++..+++
T Consensus 281 Dis~~i~ 287 (288)
T PRK07428 281 DLSMRIL 287 (288)
T ss_pred ceEEEec
Confidence 9988875
No 27
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=95.78 E-value=0.057 Score=50.12 Aligned_cols=69 Identities=23% Similarity=0.268 Sum_probs=52.6
Q ss_pred CCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCcc
Q 026886 20 YKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAAL 99 (231)
Q Consensus 20 ~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l 99 (231)
...+.|.+|--++..+ +++.+.. ..++.|-+|||+|++.|.++.+.| +|.+.+|. |+++ .+++
T Consensus 227 ~gaDiI~LDn~s~e~~----~~av~~~--------~~~~~ieaSGGI~~~ni~~yA~tG--VD~Is~ga-lths--a~~l 289 (296)
T PRK09016 227 AGADIIMLDNFTTEQM----REAVKRT--------NGRALLEVSGNVTLETLREFAETG--VDFISVGA-LTKH--VQAL 289 (296)
T ss_pred cCCCEEEeCCCChHHH----HHHHHhh--------cCCeEEEEECCCCHHHHHHHHhcC--CCEEEeCc-cccC--CCcc
Confidence 3368999999986444 3444332 137899999999999999999999 78888886 5554 6789
Q ss_pred eeEEEE
Q 026886 100 GCVFKL 105 (231)
Q Consensus 100 ~~VyKL 105 (231)
++.+++
T Consensus 290 D~sl~~ 295 (296)
T PRK09016 290 DLSMRF 295 (296)
T ss_pred ceeeec
Confidence 988764
No 28
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=95.57 E-value=0.067 Score=49.27 Aligned_cols=68 Identities=22% Similarity=0.251 Sum_probs=51.2
Q ss_pred CCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCcc
Q 026886 20 YKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAAL 99 (231)
Q Consensus 20 ~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l 99 (231)
...+.|.+|--++..+ ++..+.. . ....|-+|||+|++.|.++.+.| +|.+.+|. |+++ .|++
T Consensus 213 ~gaDiI~LDn~s~e~l----~~av~~~-------~-~~~~leaSGGI~~~ni~~yA~tG--VD~Is~Ga-lths--a~~~ 275 (281)
T PRK06106 213 LGVDAVLLDNMTPDTL----REAVAIV-------A-GRAITEASGRITPETAPAIAASG--VDLISVGW-LTHS--APVL 275 (281)
T ss_pred cCCCEEEeCCCCHHHH----HHHHHHh-------C-CCceEEEECCCCHHHHHHHHhcC--CCEEEeCh-hhcC--CCcc
Confidence 4578999999996554 4444433 2 23469999999999999999999 88898887 5443 6788
Q ss_pred eeEEE
Q 026886 100 GCVFK 104 (231)
Q Consensus 100 ~~VyK 104 (231)
++.++
T Consensus 276 Disl~ 280 (281)
T PRK06106 276 DIGLD 280 (281)
T ss_pred ccccC
Confidence 87765
No 29
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=94.49 E-value=0.22 Score=45.27 Aligned_cols=67 Identities=21% Similarity=0.251 Sum_probs=47.1
Q ss_pred ccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCccee
Q 026886 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (231)
Q Consensus 22 ~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~ 101 (231)
.+.|.+|.-.+.. ++++.... . ..+.|++|||++++.+.++.+.| +|.+.| +.++++ .|++++
T Consensus 199 aDyI~ld~~~~e~----lk~~v~~~-------~-~~ipi~AsGGI~~~ni~~~a~~G--vd~Isv-gait~s--a~~~D~ 261 (265)
T TIGR00078 199 ADIIMLDNMKPEE----IKEAVQLL-------K-GRVLLEASGGITLDNLEEYAETG--VDVISS-GALTHS--VPALDF 261 (265)
T ss_pred CCEEEECCCCHHH----HHHHHHHh-------c-CCCcEEEECCCCHHHHHHHHHcC--CCEEEe-CHHHcC--CCccce
Confidence 4567777766532 33333322 1 12689999999999999999999 789999 556654 678888
Q ss_pred EEEE
Q 026886 102 VFKL 105 (231)
Q Consensus 102 VyKL 105 (231)
..++
T Consensus 262 sl~i 265 (265)
T TIGR00078 262 SLKI 265 (265)
T ss_pred eeeC
Confidence 7653
No 30
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=93.36 E-value=0.36 Score=43.77 Aligned_cols=67 Identities=24% Similarity=0.311 Sum_probs=45.7
Q ss_pred ccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCccee
Q 026886 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (231)
Q Consensus 22 ~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~ 101 (231)
.+.|.+|.=.+..+ +++....+ ...++.|++|||++++.+.++.+.| +|.+.+| .++.+ .|++++
T Consensus 202 aD~I~ld~~~~e~l----~~~v~~i~------~~~~i~i~asGGIt~~ni~~~a~~G--ad~Isvg-al~~s--~~~~D~ 266 (269)
T cd01568 202 ADIIMLDNMSPEEL----KEAVKLLK------GLPRVLLEASGGITLENIRAYAETG--VDVISTG-ALTHS--APALDI 266 (269)
T ss_pred CCEEEECCCCHHHH----HHHHHHhc------cCCCeEEEEECCCCHHHHHHHHHcC--CCEEEEc-HHHcC--CCccCc
Confidence 56777777665333 33333321 1157899999999999999999999 6788885 55453 456776
Q ss_pred EE
Q 026886 102 VF 103 (231)
Q Consensus 102 Vy 103 (231)
..
T Consensus 267 sl 268 (269)
T cd01568 267 SL 268 (269)
T ss_pred cc
Confidence 43
No 31
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=92.77 E-value=0.44 Score=40.42 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=48.7
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEE
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~f 84 (231)
+-+.-++.+++ +.|.++.++ +..++. ..+..+.+.+ .++++.++++||++.+.+.++.+.| +++.
T Consensus 104 v~t~~e~~~A~-~~Gad~i~~--~p~~~~--g~~~~~~l~~--------~~~~~p~~a~GGI~~~n~~~~~~~G--~~~v 168 (190)
T cd00452 104 VATPTEIMQAL-ELGADIVKL--FPAEAV--GPAYIKALKG--------PFPQVRFMPTGGVSLDNAAEWLAAG--VVAV 168 (190)
T ss_pred cCCHHHHHHHH-HCCCCEEEE--cCCccc--CHHHHHHHHh--------hCCCCeEEEeCCCCHHHHHHHHHCC--CEEE
Confidence 33343433333 457666665 544432 2332333333 4567899999999999999999999 8999
Q ss_pred eecCcccc
Q 026886 85 GIGTYLVT 92 (231)
Q Consensus 85 GVGT~Lvt 92 (231)
++|+.+.+
T Consensus 169 ~v~s~i~~ 176 (190)
T cd00452 169 GGGSLLPK 176 (190)
T ss_pred EEchhcch
Confidence 99998864
No 32
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=92.51 E-value=0.61 Score=42.39 Aligned_cols=42 Identities=26% Similarity=0.437 Sum_probs=34.5
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCcceeEE
Q 026886 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVF 103 (231)
Q Consensus 57 ~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~Vy 103 (231)
++.|++|||++++.|.++.+.| +|.+.+|+ |+++ .|++++.+
T Consensus 226 ~ipi~AiGGI~~~ni~~~a~~G--vd~Iav~s-l~~~--a~~~D~sl 267 (268)
T cd01572 226 RVLLEASGGITLENIRAYAETG--VDYISVGA-LTHS--APALDISL 267 (268)
T ss_pred CCcEEEECCCCHHHHHHHHHcC--CCEEEEEe-eecC--CCccCccC
Confidence 5789999999999999999998 78888887 4443 56777754
No 33
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=91.66 E-value=0.72 Score=40.60 Aligned_cols=68 Identities=19% Similarity=0.316 Sum_probs=47.9
Q ss_pred HHHHHHHHhcCCCccEEEe-CCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeec
Q 026886 9 CAVALALNDLGYKAVGIRL-DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 9 i~Va~~L~~~g~~~~GVRl-DSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVG 87 (231)
-++..++ +.|.++.++-- +...+.++ +.+.. .+++++++++||++++.+.++.+.| .+.+|+|
T Consensus 120 ~E~~~A~-~~Gad~vklFPa~~~G~~~i-----k~l~~--------~~p~ip~~atGGI~~~N~~~~l~aG--a~~vavg 183 (213)
T PRK06552 120 TEIVTAL-EAGSEIVKLFPGSTLGPSFI-----KAIKG--------PLPQVNVMVTGGVNLDNVKDWFAAG--ADAVGIG 183 (213)
T ss_pred HHHHHHH-HcCCCEEEECCcccCCHHHH-----HHHhh--------hCCCCEEEEECCCCHHHHHHHHHCC--CcEEEEc
Confidence 3343333 46777777622 33234442 23333 6788999999999999999999998 7899999
Q ss_pred Ccccc
Q 026886 88 TYLVT 92 (231)
Q Consensus 88 T~Lvt 92 (231)
+.|..
T Consensus 184 s~l~~ 188 (213)
T PRK06552 184 GELNK 188 (213)
T ss_pred hHHhC
Confidence 99964
No 34
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=90.86 E-value=2.8 Score=38.75 Aligned_cols=72 Identities=14% Similarity=0.065 Sum_probs=50.9
Q ss_pred ccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCccee
Q 026886 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (231)
Q Consensus 22 ~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~ 101 (231)
.+.|-+|--++..+.+- .+++++ -..++.|-+|||++++.|.++.+.| +|.+ +-+.|.+ .|++++
T Consensus 210 aDiI~LDn~~~e~l~~a-v~~~~~--------~~~~~~leaSGGI~~~ni~~yA~tG--vD~I-s~gal~~---a~~~Di 274 (284)
T PRK06096 210 PDVLQLDKFSPQQATEI-AQIAPS--------LAPHCTLSLAGGINLNTLKNYADCG--IRLF-ITSAPYY---AAPADI 274 (284)
T ss_pred CCEEEECCCCHHHHHHH-HHHhhc--------cCCCeEEEEECCCCHHHHHHHHhcC--CCEE-EECcccc---CCCcCe
Confidence 56777777775555433 334432 1257899999999999999999999 6777 4445644 388999
Q ss_pred EEEEeEE
Q 026886 102 VFKLVEI 108 (231)
Q Consensus 102 VyKLve~ 108 (231)
..++-..
T Consensus 275 sl~i~~~ 281 (284)
T PRK06096 275 KVSLQPA 281 (284)
T ss_pred EEEEEec
Confidence 9888543
No 35
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=90.82 E-value=0.45 Score=41.86 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=34.9
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccc
Q 026886 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
+|++++++.+||++.+.+.++.+.| ...+|+|++|+.
T Consensus 145 plp~i~~~ptGGV~~~N~~~~l~aG--a~~vg~Gs~L~~ 181 (204)
T TIGR01182 145 PFPQVRFCPTGGINLANVRDYLAAP--NVACGGGSWLVP 181 (204)
T ss_pred cCCCCcEEecCCCCHHHHHHHHhCC--CEEEEEChhhcC
Confidence 8999999999999999999999998 579999999986
No 36
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=90.28 E-value=2.2 Score=39.73 Aligned_cols=70 Identities=26% Similarity=0.332 Sum_probs=49.4
Q ss_pred CccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCcce
Q 026886 21 KAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 100 (231)
Q Consensus 21 ~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~ 100 (231)
..+.|-+|--++..+.+ ..+.. + .++.|-+||+++++.|.++.+.| +|..=+|. |+++ .|+++
T Consensus 225 GaDiImLDnmspe~l~~----av~~~------~--~~~~lEaSGGIt~~ni~~yA~tG--VD~IS~ga-lths--a~~lD 287 (294)
T PRK06978 225 GAQSVLLDNFTLDMMRE----AVRVT------A--GRAVLEVSGGVNFDTVRAFAETG--VDRISIGA-LTKD--VRATD 287 (294)
T ss_pred CCCEEEECCCCHHHHHH----HHHhh------c--CCeEEEEECCCCHHHHHHHHhcC--CCEEEeCc-cccC--Ccccc
Confidence 35677777777655543 33322 1 36799999999999999999999 55555553 5554 68999
Q ss_pred eEEEEeE
Q 026886 101 CVFKLVE 107 (231)
Q Consensus 101 ~VyKLve 107 (231)
+.+++.|
T Consensus 288 ~sl~~~~ 294 (294)
T PRK06978 288 YSMRIVE 294 (294)
T ss_pred eEEeccC
Confidence 9988753
No 37
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=89.69 E-value=1.3 Score=37.41 Aligned_cols=36 Identities=17% Similarity=0.270 Sum_probs=31.4
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
...|+++||++.+.+.++.+.| +|.+.+|+.+..+.
T Consensus 158 ~~~i~v~GGI~~~n~~~~~~~G--a~~v~vGsai~~~~ 193 (206)
T TIGR03128 158 EARVAVAGGINLDTIPDVIKLG--PDIVIVGGAITKAA 193 (206)
T ss_pred CCcEEEECCcCHHHHHHHHHcC--CCEEEEeehhcCCC
Confidence 4578889999999999999988 68999999997743
No 38
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.50 E-value=2.6 Score=38.67 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=36.3
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCcceeEEEE
Q 026886 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKL 105 (231)
Q Consensus 57 ~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~VyKL 105 (231)
.+.|++|||++++.+.++.+.| +|.+-+|. |+++ .|++++.+++
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~G--vd~IAvg~-l~~s--a~~~D~~~~~ 275 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTG--VDYISLGF-LTHS--VKALDISFNI 275 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcC--CCEEEECh-hhcC--CcccceEEEc
Confidence 4678999999999999999999 77887875 5553 5888988765
No 39
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=89.24 E-value=0.57 Score=41.72 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=34.4
Q ss_pred CCCCeEEEEeCCCCH--HHHHHHHhcCCceeEEeecCcccc
Q 026886 54 DFEKMSITASNDLNE--ETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde--~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
+|++++++.+||++. +.+.++.+.| ..++|+|++|+.
T Consensus 155 p~p~i~~~ptGGV~~~~~n~~~yl~aG--a~avg~Gs~L~~ 193 (222)
T PRK07114 155 PMPWTKIMPTGGVEPTEENLKKWFGAG--VTCVGMGSKLIP 193 (222)
T ss_pred cCCCCeEEeCCCCCcchhcHHHHHhCC--CEEEEEChhhcC
Confidence 899999999999998 8999999988 779999999975
No 40
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=89.14 E-value=4.4 Score=37.57 Aligned_cols=47 Identities=23% Similarity=0.398 Sum_probs=38.4
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCcceeEEEEeE
Q 026886 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVE 107 (231)
Q Consensus 56 ~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~VyKLve 107 (231)
.++.+=+||+++++.|.++...| +|.+-+| .|+.+ .|.|++.+++..
T Consensus 233 ~~~~lEaSGgIt~~ni~~yA~tG--VD~IS~g-alths--~~~lDisl~~~~ 279 (280)
T COG0157 233 GRALLEASGGITLENIREYAETG--VDVISVG-ALTHS--APALDISLDIVR 279 (280)
T ss_pred CceEEEEeCCCCHHHHHHHhhcC--CCEEEeC-ccccC--CcccceEEEeec
Confidence 37899999999999999999999 6777776 34443 688999988764
No 41
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=88.89 E-value=0.91 Score=38.07 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=32.7
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 56 ~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
.++.|++.||++.+.+.++.+.| .|.+++|+.|+...
T Consensus 157 ~~~~i~~~GGI~~~~i~~~~~~G--ad~vvvGsai~~~~ 193 (202)
T cd04726 157 LGVKVAVAGGITPDTLPEFKKAG--ADIVIVGRAITGAA 193 (202)
T ss_pred cCCCEEEECCcCHHHHHHHHhcC--CCEEEEeehhcCCC
Confidence 35799999999999999999998 68999999997643
No 42
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=88.77 E-value=3 Score=34.04 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=51.1
Q ss_pred hcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccc
Q 026886 17 DLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 17 ~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
+.+.+..|+=-=.++-..+.+++.+.|++. |..+++|++=|.+-.+...+|.+.|. -..|+.||++..
T Consensus 51 e~~adii~iSsl~~~~~~~~~~~~~~L~~~-------g~~~i~vivGG~~~~~~~~~l~~~Gv-d~~~~~gt~~~~ 118 (132)
T TIGR00640 51 EADVHVVGVSSLAGGHLTLVPALRKELDKL-------GRPDILVVVGGVIPPQDFDELKEMGV-AEIFGPGTPIPE 118 (132)
T ss_pred HcCCCEEEEcCchhhhHHHHHHHHHHHHhc-------CCCCCEEEEeCCCChHhHHHHHHCCC-CEEECCCCCHHH
Confidence 345666676433345566777788888776 77788999988888888999999996 368999998754
No 43
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=88.63 E-value=4 Score=37.75 Aligned_cols=68 Identities=26% Similarity=0.335 Sum_probs=48.9
Q ss_pred CccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCcce
Q 026886 21 KAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 100 (231)
Q Consensus 21 ~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~ 100 (231)
..+.|-+|--++..+.+-+ ... . .++.|-+||++|++.|.++.+.| +|..=+|. |+++ .|+++
T Consensus 213 gaDiImLDn~s~e~l~~av----~~~-------~-~~~~leaSGgI~~~ni~~yA~tG--VD~Is~ga-lths--~~~~D 275 (281)
T PRK06543 213 GVDTIMLDNFSLDDLREGV----ELV-------D-GRAIVEASGNVNLNTVGAIASTG--VDVISVGA-LTHS--VRALD 275 (281)
T ss_pred CCCEEEECCCCHHHHHHHH----HHh-------C-CCeEEEEECCCCHHHHHHHHhcC--CCEEEeCc-cccC--Ccccc
Confidence 3578888888866654333 322 1 34589999999999999999999 56665664 5554 68889
Q ss_pred eEEEE
Q 026886 101 CVFKL 105 (231)
Q Consensus 101 ~VyKL 105 (231)
+.+++
T Consensus 276 ~sl~i 280 (281)
T PRK06543 276 LGLDI 280 (281)
T ss_pred eeeec
Confidence 88764
No 44
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=88.50 E-value=0.51 Score=46.40 Aligned_cols=132 Identities=17% Similarity=0.170 Sum_probs=94.9
Q ss_pred HHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEee
Q 026886 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGV 86 (231)
.....+.+|-+.|.+. |=+|+-.=. ++.+.+++.+.++ -++++.|++-|=-+.+..+.|.+.|+..-..||
T Consensus 227 ~~~~~a~~Lv~aGvd~--i~~D~a~~~--~~~~~~~i~~ik~-----~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgi 297 (479)
T PRK07807 227 DVAAKARALLEAGVDV--LVVDTAHGH--QEKMLEALRAVRA-----LDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGV 297 (479)
T ss_pred hHHHHHHHHHHhCCCE--EEEeccCCc--cHHHHHHHHHHHH-----HCCCCeEEeeccCCHHHHHHHHHcCCCEEEECc
Confidence 3456677787778665 777864311 5556666666655 457789999999999999999999987777788
Q ss_pred cC------cccccCCCCcceeEEEEeEE---CCcceeeccCCCCcCCCCCc-ceeeeecCCCCCceeeEEecCCCC
Q 026886 87 GT------YLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPCK-KRSYRLYGKEGYPLVDIMTGENEP 152 (231)
Q Consensus 87 GT------~Lvt~~~~p~l~~VyKLve~---~g~P~~KlS~~~~K~t~PG~-K~v~R~~~~~g~~~~D~i~l~~e~ 152 (231)
|+ +.+|....|-+..|+++.+. .|.|+|== |.+..||. .+.+. .+++..+++-+++..+|.
T Consensus 298 g~gsictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~----ggi~~~~~~~~al~-~ga~~v~~g~~~ag~~Es 368 (479)
T PRK07807 298 GPGAMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWAD----GGVRHPRDVALALA-AGASNVMIGSWFAGTYES 368 (479)
T ss_pred cCCcccccccccCCchhHHHHHHHHHHHHHhcCCcEEec----CCCCCHHHHHHHHH-cCCCeeeccHhhccCccC
Confidence 87 55666677999999999874 25677643 67777886 22222 356677777888888885
No 45
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.15 E-value=1.1 Score=38.49 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=33.1
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccc
Q 026886 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
.++++.+++.||++.+.+.++.+.| .++.|||+.|..
T Consensus 149 ~~~~ipvvaiGGI~~~n~~~~l~aG--a~~vav~s~i~~ 185 (187)
T PRK07455 149 PLGHIPLIPTGGVTLENAQAFIQAG--AIAVGLSGQLFP 185 (187)
T ss_pred hCCCCcEEEeCCCCHHHHHHHHHCC--CeEEEEehhccc
Confidence 4567899999999999999999988 789999999864
No 46
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=87.31 E-value=0.56 Score=41.05 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=32.0
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccccc
Q 026886 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
+|++++++.+||++.+-+.++.+.| ....|+|++|+..
T Consensus 145 p~p~~~~~ptGGV~~~N~~~~l~ag--~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 145 PFPDLPFMPTGGVNPDNLAEYLKAG--AVAVGGGSWLFPK 182 (196)
T ss_dssp TTTT-EEEEBSS--TTTHHHHHTST--TBSEEEESGGGSH
T ss_pred cCCCCeEEEcCCCCHHHHHHHHhCC--CEEEEECchhcCH
Confidence 7999999999999999999999998 4688999999874
No 47
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=87.13 E-value=4.4 Score=31.98 Aligned_cols=65 Identities=20% Similarity=0.298 Sum_probs=46.0
Q ss_pred CCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccc
Q 026886 19 GYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLV 91 (231)
Q Consensus 19 g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lv 91 (231)
+-+..++=.-.+......+++.+.|++. +..+++|++.|..-.+.+.+|.+.|. -..|+.||..-
T Consensus 50 ~~d~V~iS~~~~~~~~~~~~~~~~L~~~-------~~~~i~i~~GG~~~~~~~~~~~~~G~-d~~~~~~~~~~ 114 (122)
T cd02071 50 DVDVIGLSSLSGGHMTLFPEVIELLREL-------GAGDILVVGGGIIPPEDYELLKEMGV-AEIFGPGTSIE 114 (122)
T ss_pred CCCEEEEcccchhhHHHHHHHHHHHHhc-------CCCCCEEEEECCCCHHHHHHHHHCCC-CEEECCCCCHH
Confidence 5555666333344555566666666665 77789999999888888999999993 35788887653
No 48
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=86.73 E-value=6.4 Score=36.25 Aligned_cols=67 Identities=15% Similarity=0.056 Sum_probs=45.9
Q ss_pred ccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCccee
Q 026886 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (231)
Q Consensus 22 ~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~ 101 (231)
.+.|-+|--++..+.+.++ ++++ ...++.|-+|||+|++.|.++.+.| +|.+=+|. +.+ ++++++
T Consensus 209 aDiI~lDn~~~e~l~~~v~-~l~~--------~~~~~~leasGGI~~~ni~~ya~~G--vD~is~ga-l~~---a~~~Di 273 (277)
T TIGR01334 209 PDILQLDKFTPQQLHHLHE-RLKF--------FDHIPTLAAAGGINPENIADYIEAG--IDLFITSA-PYY---AAPCDI 273 (277)
T ss_pred cCEEEECCCCHHHHHHHHH-HHhc--------cCCCEEEEEECCCCHHHHHHHHhcC--CCEEEeCc-cee---cCccce
Confidence 5677778666655544433 3433 2357899999999999999999998 66665554 444 456665
Q ss_pred EE
Q 026886 102 VF 103 (231)
Q Consensus 102 Vy 103 (231)
--
T Consensus 274 ~~ 275 (277)
T TIGR01334 274 KV 275 (277)
T ss_pred EE
Confidence 43
No 49
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=86.68 E-value=8 Score=36.31 Aligned_cols=68 Identities=22% Similarity=0.331 Sum_probs=47.8
Q ss_pred CccEEEeCCC---------ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccc
Q 026886 21 KAVGIRLDSG---------DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLV 91 (231)
Q Consensus 21 ~~~GVRlDSG---------Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lv 91 (231)
..+.|-+|-- ++..+.+ ++... + ..+.|-+|||++++.|.++.+.| +|..=+|. |+
T Consensus 229 gaDiImLDnm~~~~~~~~~~~e~l~~----av~~~-------~-~~~~lEaSGGIt~~ni~~yA~tG--VD~Is~Ga-lt 293 (308)
T PLN02716 229 SLTRVMLDNMVVPLENGDVDVSMLKE----AVELI-------N-GRFETEASGNVTLDTVHKIGQTG--VTYISSGA-LT 293 (308)
T ss_pred CCCEEEeCCCcccccccCCCHHHHHH----HHHhh-------C-CCceEEEECCCCHHHHHHHHHcC--CCEEEeCc-cc
Confidence 3677888888 6555433 33332 1 33579999999999999999999 55555553 55
Q ss_pred ccCCCCcceeEEEE
Q 026886 92 TCYAQAALGCVFKL 105 (231)
Q Consensus 92 t~~~~p~l~~VyKL 105 (231)
++ .|++++..++
T Consensus 294 hs--a~~~Disl~i 305 (308)
T PLN02716 294 HS--VKALDISLKI 305 (308)
T ss_pred cC--CCccceEEEE
Confidence 53 6889998887
No 50
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=85.81 E-value=2.9 Score=36.83 Aligned_cols=62 Identities=13% Similarity=0.208 Sum_probs=44.6
Q ss_pred HHhcCCCccEEEeCC---CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccc
Q 026886 15 LNDLGYKAVGIRLDS---GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLV 91 (231)
Q Consensus 15 L~~~g~~~~GVRlDS---GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lv 91 (231)
+.+.|.+..-+ .+. |.+.|+ +.|.. +|++++++.+||++++.+.++.+.|+ ...|.|+.|+
T Consensus 124 a~~~Ga~~vKl-FPa~~~gg~~~l-----k~l~~--------p~p~~~~~ptGGV~~~ni~~~l~ag~--v~~vggs~L~ 187 (212)
T PRK05718 124 GMELGLRTFKF-FPAEASGGVKML-----KALAG--------PFPDVRFCPTGGISPANYRDYLALPN--VLCIGGSWMV 187 (212)
T ss_pred HHHCCCCEEEE-ccchhccCHHHH-----HHHhc--------cCCCCeEEEeCCCCHHHHHHHHhCCC--EEEEEChHhC
Confidence 44568877777 443 334443 24443 68899999999999999999999983 3455599997
Q ss_pred c
Q 026886 92 T 92 (231)
Q Consensus 92 t 92 (231)
.
T Consensus 188 ~ 188 (212)
T PRK05718 188 P 188 (212)
T ss_pred C
Confidence 5
No 51
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=85.66 E-value=2.1 Score=40.74 Aligned_cols=131 Identities=22% Similarity=0.214 Sum_probs=86.0
Q ss_pred HHHHHHHHHHhcCCCccEEEeCC--CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEE
Q 026886 7 NFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~f 84 (231)
+-..-+.+|-+.|..++-|=+|| |. |+.+.+++...+. -+++..|++-|=.+.+..++|.+.|+..--.
T Consensus 107 ~d~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~-----~~p~~~viaGNV~T~e~a~~Li~aGAD~ikV 177 (343)
T TIGR01305 107 NDLEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVRE-----AFPEHTIMAGNVVTGEMVEELILSGADIVKV 177 (343)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHh-----hCCCCeEEEecccCHHHHHHHHHcCCCEEEE
Confidence 44556677878777788999998 66 5555555555544 3466799999999999999999999875555
Q ss_pred eec------CcccccCCCCcceeEEEEeEECCc---ceeeccCCCCcCCCCCc--ceeeeecCCCCCceeeEEecCCCC
Q 026886 85 GIG------TYLVTCYAQAALGCVFKLVEINKQ---PRIKLSEDVSKVSIPCK--KRSYRLYGKEGYPLVDIMTGENEP 152 (231)
Q Consensus 85 GVG------T~Lvt~~~~p~l~~VyKLve~~g~---P~~KlS~~~~K~t~PG~--K~v~R~~~~~g~~~~D~i~l~~e~ 152 (231)
||| |+.++....|.+..+++.++.-+. |++ .| |=...+|. |.+- .+++..+++-+++-.+|.
T Consensus 178 giGpGSicttR~~~Gvg~pqltAv~~~a~aa~~~~v~VI--aD--GGIr~~gDI~KALA--~GAd~VMlG~llAG~~Es 250 (343)
T TIGR01305 178 GIGPGSVCTTRTKTGVGYPQLSAVIECADAAHGLKGHII--SD--GGCTCPGDVAKAFG--AGADFVMLGGMFAGHTES 250 (343)
T ss_pred cccCCCcccCceeCCCCcCHHHHHHHHHHHhccCCCeEE--Ec--CCcCchhHHHHHHH--cCCCEEEECHhhhCcCcC
Confidence 543 555555566888888888766443 333 33 23344454 3332 344555555566655553
No 52
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=85.43 E-value=1.9 Score=37.19 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=31.4
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
++.|++.||+ +.+.+.++.+.| .|+++|||.|+...
T Consensus 177 ~ipvia~GGI~~~~~~~~~l~~G--adgV~vGsal~~~~ 213 (219)
T cd04729 177 GIPVIAEGRINSPEQAAKALELG--ADAVVVGSAITRPE 213 (219)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCC--CCEEEEchHHhChH
Confidence 4689999999 799999999998 79999999997643
No 53
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=85.19 E-value=1.7 Score=42.77 Aligned_cols=131 Identities=17% Similarity=0.165 Sum_probs=83.4
Q ss_pred HHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEee
Q 026886 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGV 86 (231)
.....+.+|-+.|.+. |=+|+-+ -.++.+.+++++.+. -+.++.|++-|..+.+.++.|.+.|+..-..|+
T Consensus 225 ~~~~ra~~Lv~aGVd~--i~~D~a~--g~~~~~~~~i~~i~~-----~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~ 295 (475)
T TIGR01303 225 DVGGKAKALLDAGVDV--LVIDTAH--GHQVKMISAIKAVRA-----LDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGV 295 (475)
T ss_pred cHHHHHHHHHHhCCCE--EEEeCCC--CCcHHHHHHHHHHHH-----HCCCCeEEEeccCCHHHHHHHHHhCCCEEEECC
Confidence 3456677788778654 7778754 223445555555544 356789999999999999999999987655666
Q ss_pred c------CcccccCCCCcceeEEEEeEE---CCcceeeccCCCCcCCCCCc--ceeeeecCCCCCceeeEEecCCCC
Q 026886 87 G------TYLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPCK--KRSYRLYGKEGYPLVDIMTGENEP 152 (231)
Q Consensus 87 G------T~Lvt~~~~p~l~~VyKLve~---~g~P~~KlS~~~~K~t~PG~--K~v~R~~~~~g~~~~D~i~l~~e~ 152 (231)
| |+.+|..+.|.+..++++++. .|.|++ .+ |-...||. |.+ ..+++-.+++-+++-.+|.
T Consensus 296 g~Gs~~ttr~~~~~g~~~~~a~~~~~~~~~~~~~~vi--ad--Ggi~~~~di~kal--a~GA~~vm~g~~~ag~~es 366 (475)
T TIGR01303 296 GPGAMCTTRMMTGVGRPQFSAVLECAAEARKLGGHVW--AD--GGVRHPRDVALAL--AAGASNVMVGSWFAGTYES 366 (475)
T ss_pred cCCccccCccccCCCCchHHHHHHHHHHHHHcCCcEE--Ee--CCCCCHHHHHHHH--HcCCCEEeechhhcccccC
Confidence 6 566666677878877777432 144554 22 44555564 333 2344444555566666663
No 54
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=84.52 E-value=3.7 Score=39.14 Aligned_cols=130 Identities=20% Similarity=0.201 Sum_probs=91.9
Q ss_pred HHHHHHHHHhcCCCccEEEeCC--CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 8 FCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 8 ai~Va~~L~~~g~~~~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
-..-+.+|-+..-.++-|=+|| |. |..+.+++.+.++ -++++.|++-|=-+.+..++|.+.|+.+--.|
T Consensus 109 d~er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~-----~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVG 179 (346)
T PRK05096 109 DFEKTKQILALSPALNFICIDVANGY----SEHFVQFVAKARE-----AWPDKTICAGNVVTGEMVEELILSGADIVKVG 179 (346)
T ss_pred HHHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHH-----hCCCCcEEEecccCHHHHHHHHHcCCCEEEEc
Confidence 3444556666544567888998 66 5555555555555 45778999999999999999999999877788
Q ss_pred ec------CcccccCCCCcceeEEEEeEEC---CcceeeccCCCCcCCCCCc--ceeeeecCCCCCceeeEEecCCCC
Q 026886 86 IG------TYLVTCYAQAALGCVFKLVEIN---KQPRIKLSEDVSKVSIPCK--KRSYRLYGKEGYPLVDIMTGENEP 152 (231)
Q Consensus 86 VG------T~Lvt~~~~p~l~~VyKLve~~---g~P~~KlS~~~~K~t~PG~--K~v~R~~~~~g~~~~D~i~l~~e~ 152 (231)
|| |+++|..+.|-|..||+..+.. |.|++ +| |=..+||. |.+. .+++-.+++.+++-.+|.
T Consensus 180 IGpGSiCtTr~vtGvG~PQltAV~~~a~~a~~~gvpiI--AD--GGi~~sGDI~KAla--aGAd~VMlGsllAGt~Es 251 (346)
T PRK05096 180 IGPGSVCTTRVKTGVGYPQLSAVIECADAAHGLGGQIV--SD--GGCTVPGDVAKAFG--GGADFVMLGGMLAGHEES 251 (346)
T ss_pred ccCCccccCccccccChhHHHHHHHHHHHHHHcCCCEE--ec--CCcccccHHHHHHH--cCCCEEEeChhhcCcccC
Confidence 88 7777777888888888877653 44554 44 44556675 4442 355666667777777774
No 55
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=84.31 E-value=1.8 Score=36.27 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=32.0
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
++.|++.||++++.+.++.+.| .+++.+|+.+..+.
T Consensus 152 ~~pv~a~GGI~~~~~~~~~~~G--~~gva~~~~i~~~~ 187 (196)
T TIGR00693 152 DIPIVAIGGITLENAAEVLAAG--ADGVAVVSAIMQAA 187 (196)
T ss_pred CCCEEEECCcCHHHHHHHHHcC--CCEEEEhHHhhCCC
Confidence 4689999999999999999988 68999999998653
No 56
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=84.04 E-value=2 Score=41.59 Aligned_cols=131 Identities=24% Similarity=0.276 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHhcCCCccEEEeCC--CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeE
Q 026886 6 PNFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~ 83 (231)
++..+-+.+|.+.| +..|=+|+ |+ +..+.+.+.+.++ -++++.|++.|-++.+.++.+.+.|+..-.
T Consensus 223 ~~~~~r~~~L~~aG--~d~I~vd~a~g~----~~~~~~~i~~i~~-----~~~~~~vi~G~v~t~~~a~~l~~aGad~i~ 291 (450)
T TIGR01302 223 EFDKERAEALVKAG--VDVIVIDSSHGH----SIYVIDSIKEIKK-----TYPDLDIIAGNVATAEQAKALIDAGADGLR 291 (450)
T ss_pred hhHHHHHHHHHHhC--CCEEEEECCCCc----HhHHHHHHHHHHH-----hCCCCCEEEEeCCCHHHHHHHHHhCCCEEE
Confidence 45566777888877 45788898 55 3344444444444 335789999999999999999999965333
Q ss_pred Eeec------CcccccCCCCcceeEEEEeEE---CCcceeeccCCCCcCCCCCc-ceeeeecCCCCCceeeEEecCCCC
Q 026886 84 FGIG------TYLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPCK-KRSYRLYGKEGYPLVDIMTGENEP 152 (231)
Q Consensus 84 fGVG------T~Lvt~~~~p~l~~VyKLve~---~g~P~~KlS~~~~K~t~PG~-K~v~R~~~~~g~~~~D~i~l~~e~ 152 (231)
.|+| |..++..+.|.+..++++.+. .+.|++= + |-...||. .+.+. .+++-.+++.+++-.+|.
T Consensus 292 vg~g~G~~~~t~~~~~~g~p~~~~i~~~~~~~~~~~vpvia--d--GGi~~~~di~kAla-~GA~~V~~G~~~a~~~e~ 365 (450)
T TIGR01302 292 VGIGPGSICTTRIVAGVGVPQITAVYDVAEYAAQSGIPVIA--D--GGIRYSGDIVKALA-AGADAVMLGSLLAGTTES 365 (450)
T ss_pred ECCCCCcCCccceecCCCccHHHHHHHHHHHHhhcCCeEEE--e--CCCCCHHHHHHHHH-cCCCEEEECchhhcCCcC
Confidence 3443 344444455666666666443 2445432 2 33344443 12222 244445556677777774
No 57
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=83.76 E-value=8.6 Score=35.75 Aligned_cols=69 Identities=19% Similarity=0.224 Sum_probs=49.1
Q ss_pred CccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCcce
Q 026886 21 KAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 100 (231)
Q Consensus 21 ~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~ 100 (231)
..+.|-+|--++..+.+-+. +++ .++.|-+|||++++.+.++.+.| +|..=+|. |+++ +|+++
T Consensus 217 gaDiImLDnmspe~l~~av~-~~~-----------~~~~leaSGGI~~~ni~~yA~tG--VD~Is~ga-lths--a~~~D 279 (290)
T PRK06559 217 GADIIMLDNMSLEQIEQAIT-LIA-----------GRSRIECSGNIDMTTISRFRGLA--IDYVSSGS-LTHS--AKSLD 279 (290)
T ss_pred CCCEEEECCCCHHHHHHHHH-Hhc-----------CceEEEEECCCCHHHHHHHHhcC--CCEEEeCc-cccC--Ccccc
Confidence 36788888888666644332 221 26799999999999999999999 55555554 5543 67888
Q ss_pred eEEEEe
Q 026886 101 CVFKLV 106 (231)
Q Consensus 101 ~VyKLv 106 (231)
+.+|..
T Consensus 280 isl~~~ 285 (290)
T PRK06559 280 FSMKGL 285 (290)
T ss_pred eeeech
Confidence 876643
No 58
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=83.08 E-value=2.6 Score=36.33 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=29.9
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccc
Q 026886 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 57 ~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
++.++++||+ +.+.+.++.+.| .|++.|||.|+.
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~~G--adgV~iGsai~~ 207 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALELG--AHAVVVGGAITR 207 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHHCC--CCEEEEchHhcC
Confidence 3579999999 799999999988 689999999875
No 59
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=83.03 E-value=2.2 Score=35.90 Aligned_cols=36 Identities=14% Similarity=0.245 Sum_probs=31.9
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccccc
Q 026886 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 56 ~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
+++.|++.||++.+.+.++.+.| .|++.+|+.+..+
T Consensus 159 ~~~~v~a~GGI~~~~i~~~~~~G--a~gv~~gs~i~~~ 194 (212)
T PRK00043 159 GDIPIVAIGGITPENAPEVLEAG--ADGVAVVSAITGA 194 (212)
T ss_pred CCCCEEEECCcCHHHHHHHHHcC--CCEEEEeHHhhcC
Confidence 34799999999999999999999 6899999999764
No 60
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=82.99 E-value=1.4 Score=35.91 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=32.0
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccccc
Q 026886 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 56 ~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
.++.|++.||++.+.+.++.+.| .|++.+|+.+..+
T Consensus 149 ~~~pv~a~GGi~~~~i~~~~~~G--a~~i~~g~~i~~~ 184 (196)
T cd00564 149 VEIPVVAIGGITPENAAEVLAAG--ADGVAVISAITGA 184 (196)
T ss_pred CCCCEEEECCCCHHHHHHHHHcC--CCEEEEehHhhcC
Confidence 34789999999999999999988 7899999998764
No 61
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=82.92 E-value=2.5 Score=36.87 Aligned_cols=38 Identities=21% Similarity=0.343 Sum_probs=33.5
Q ss_pred CCC-CeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccccc
Q 026886 54 DFE-KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 54 g~~-~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
.++ ++.++++||++.+.+.++.+.| .++.+||+.|...
T Consensus 147 ~~~~~ipvvaiGGI~~~n~~~~~~aG--a~~vav~s~l~~~ 185 (206)
T PRK09140 147 VLPPDVPVFAVGGVTPENLAPYLAAG--AAGFGLGSALYRP 185 (206)
T ss_pred hcCCCCeEEEECCCCHHHHHHHHHCC--CeEEEEehHhccc
Confidence 444 6899999999999999999999 7899999999763
No 62
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=81.71 E-value=9.6 Score=32.07 Aligned_cols=68 Identities=16% Similarity=0.223 Sum_probs=57.6
Q ss_pred hcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccc
Q 026886 17 DLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 17 ~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
+..-...||=.=+|.=..+..++++.+.++ |..++.+++-|-+-.+.+.+|.+.|.. -.|+.||.+.-
T Consensus 61 ~~dv~vIgvSsl~g~h~~l~~~lve~lre~-------G~~~i~v~~GGvip~~d~~~l~~~G~~-~if~pgt~~~~ 128 (143)
T COG2185 61 EEDVDVIGVSSLDGGHLTLVPGLVEALREA-------GVEDILVVVGGVIPPGDYQELKEMGVD-RIFGPGTPIEE 128 (143)
T ss_pred hcCCCEEEEEeccchHHHHHHHHHHHHHHh-------CCcceEEeecCccCchhHHHHHHhCcc-eeeCCCCCHHH
Confidence 345567777777788888999999999998 999988899999999999999999863 48999998854
No 63
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=80.97 E-value=3.7 Score=37.91 Aligned_cols=76 Identities=18% Similarity=0.270 Sum_probs=52.8
Q ss_pred hHHHHHHHHHHHhcCCCccEEE----e-------CCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHHHHH
Q 026886 5 VPNFCAVALALNDLGYKAVGIR----L-------DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLD 72 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVR----l-------DSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~~I~ 72 (231)
+..++.++++|.+.|..+.-|- . .++....+++++|+. .++.|++.|++ +.+.+.
T Consensus 240 ~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir~~-------------~~iPVi~~G~i~t~~~a~ 306 (336)
T cd02932 240 LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIRQE-------------AGIPVIAVGLITDPEQAE 306 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHHhh-------------CCCCEEEeCCCCCHHHHH
Confidence 6678999999998887665431 1 111112333333332 24689999998 888899
Q ss_pred HHHhcCCceeEEeecCcccccC
Q 026886 73 ALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 73 ~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
++.++|. +|..++|+.+..+.
T Consensus 307 ~~l~~g~-aD~V~~gR~~i~dP 327 (336)
T cd02932 307 AILESGR-ADLVALGRELLRNP 327 (336)
T ss_pred HHHHcCC-CCeehhhHHHHhCc
Confidence 9999875 79999999998854
No 64
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=80.49 E-value=12 Score=30.66 Aligned_cols=65 Identities=15% Similarity=0.052 Sum_probs=45.2
Q ss_pred CCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC------CHHHHHHHHhcCCceeEEeecCccc
Q 026886 19 GYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL------NEETLDALNKQGHEVDAFGIGTYLV 91 (231)
Q Consensus 19 g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L------de~~I~~L~~~ga~id~fGVGT~Lv 91 (231)
+-++.|+=.=++-.....+++.+.|++. ++.+++|++.|.+ .++...+|.+.|. -..|+=||.+-
T Consensus 54 ~~d~V~lS~~~~~~~~~~~~~~~~L~~~-------~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~-~~vf~~~~~~~ 124 (137)
T PRK02261 54 DADAILVSSLYGHGEIDCRGLREKCIEA-------GLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF-DRVFPPGTDPE 124 (137)
T ss_pred CCCEEEEcCccccCHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCccChHHHHHHHHHcCC-CEEECcCCCHH
Confidence 3444455333344455667777777775 7778899999998 5777788999884 35898888764
No 65
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=80.11 E-value=2.6 Score=37.61 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=34.9
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccc
Q 026886 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
++++++++.+||+++.-+.++...| +.++|+|+.|+.
T Consensus 150 P~~~v~~~pTGGVs~~N~~~yla~g--v~avG~Gs~l~~ 186 (211)
T COG0800 150 PFPQVRFCPTGGVSLDNAADYLAAG--VVAVGLGSWLVP 186 (211)
T ss_pred CCCCCeEeecCCCCHHHHHHHHhCC--ceEEecCccccC
Confidence 6889999999999999999999998 899999999985
No 66
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=79.26 E-value=16 Score=29.95 Aligned_cols=52 Identities=13% Similarity=0.115 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC------HHHHHHHHhcCCceeEEeecCcccc
Q 026886 33 AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN------EETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 33 ~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Ld------e~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
....+++.+.|+++ |+.+++|++-|.+- ++...+|.+.|. -..||-||.+.+
T Consensus 64 ~~~~~~~~~~l~~~-------gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv-~~vf~pgt~~~~ 121 (128)
T cd02072 64 EIDCKGLREKCDEA-------GLKDILLYVGGNLVVGKQDFEDVEKRFKEMGF-DRVFAPGTPPEE 121 (128)
T ss_pred HHHHHHHHHHHHHC-------CCCCCeEEEECCCCCChhhhHHHHHHHHHcCC-CEEECcCCCHHH
Confidence 55667788888887 88789999999973 455677999986 358999997654
No 67
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=78.49 E-value=4.4 Score=35.74 Aligned_cols=35 Identities=11% Similarity=0.330 Sum_probs=30.7
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccccc
Q 026886 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
++.|.+=||++++.+..+.+.| .|.|=+||.+..+
T Consensus 167 ~~~I~vdGGI~~eni~~l~~aG--Ad~vVvGSaIf~~ 201 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIAEAG--ADMFVAGSAIFGQ 201 (220)
T ss_pred CeeEEEECCCCHHHHHHHHHcC--CCEEEEeHHHhCC
Confidence 4689999999999999999999 6788899998653
No 68
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=78.07 E-value=5.5 Score=33.38 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=30.5
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 58 v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
+.|++.||++.+.+.++.+.| +|.+-||+.+....
T Consensus 166 ~~i~v~GGI~~env~~l~~~g--ad~iivgsai~~~~ 200 (210)
T TIGR01163 166 ILIEVDGGVNDDNARELAEAG--ADILVAGSAIFGAD 200 (210)
T ss_pred ceEEEECCcCHHHHHHHHHcC--CCEEEEChHHhCCC
Confidence 479999999999999999888 68999999997643
No 69
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=77.83 E-value=4.8 Score=35.39 Aligned_cols=37 Identities=3% Similarity=-0.004 Sum_probs=32.2
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccc
Q 026886 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
+|++++++.+||++.+.+.++.+.|+- ..|.|+.|+.
T Consensus 141 plp~~~l~ptGGV~~~n~~~~l~ag~~--~~~ggs~l~~ 177 (201)
T PRK06015 141 PLAGTFFCPTGGISLKNARDYLSLPNV--VCVGGSWVAP 177 (201)
T ss_pred hCCCCcEEecCCCCHHHHHHHHhCCCe--EEEEchhhCC
Confidence 889999999999999999999999853 5566888875
No 70
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=77.68 E-value=6 Score=35.15 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=31.5
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccccc
Q 026886 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
++ +++|-+-||++++.+..+.+.|+ |.|=+||.+...
T Consensus 169 ~~-~~~IeVDGGI~~eti~~l~~aGa--Di~V~GSaiF~~ 205 (223)
T PRK08745 169 GK-PIRLEIDGGVKADNIGAIAAAGA--DTFVAGSAIFNA 205 (223)
T ss_pred CC-CeeEEEECCCCHHHHHHHHHcCC--CEEEEChhhhCC
Confidence 44 47999999999999999999995 788889998753
No 71
>PRK08508 biotin synthase; Provisional
Probab=77.35 E-value=14 Score=33.31 Aligned_cols=75 Identities=17% Similarity=0.198 Sum_probs=44.6
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCCC-h-HHHHHHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCce
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSGD-L-AYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEV 81 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSGD-l-~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~i 81 (231)
....++.|+++.+.|..-..+ .+||. + ......+.++++.++++ +.++.+.+| |-++++.+++|.+.| +
T Consensus 42 ~eeI~~~a~~a~~~g~~~~~l-v~sg~~~~~~~~e~~~ei~~~ik~~-----~p~l~i~~s~G~~~~e~l~~Lk~aG--l 113 (279)
T PRK08508 42 IEQIVQEAKMAKANGALGFCL-VTSGRGLDDKKLEYVAEAAKAVKKE-----VPGLHLIACNGTASVEQLKELKKAG--I 113 (279)
T ss_pred HHHHHHHHHHHHHCCCCEEEE-EeccCCCCcccHHHHHHHHHHHHhh-----CCCcEEEecCCCCCHHHHHHHHHcC--C
Confidence 466777888877777643333 35554 1 11122334444443321 245667655 667999999999999 5
Q ss_pred eEEeec
Q 026886 82 DAFGIG 87 (231)
Q Consensus 82 d~fGVG 87 (231)
|++.++
T Consensus 114 d~~~~~ 119 (279)
T PRK08508 114 FSYNHN 119 (279)
T ss_pred CEEccc
Confidence 666664
No 72
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=77.24 E-value=6.6 Score=33.31 Aligned_cols=35 Identities=17% Similarity=0.346 Sum_probs=31.0
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 58 v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
..|++-||++++.+.++.+.| +|++=||+.++.+.
T Consensus 171 ~~i~v~GGI~~~nv~~l~~~G--aD~vvvgSai~~~~ 205 (220)
T PRK05581 171 ILIEVDGGINADNIKECAEAG--ADVFVAGSAVFGAP 205 (220)
T ss_pred ceEEEECCCCHHHHHHHHHcC--CCEEEEChhhhCCC
Confidence 578899999999999999987 68999999998754
No 73
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=75.83 E-value=11 Score=34.00 Aligned_cols=34 Identities=18% Similarity=0.171 Sum_probs=28.8
Q ss_pred eEEEEeCCC-CHHHHHHHHhcCCceeEEeecCccccc
Q 026886 58 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 58 v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
+.|+++||+ +.+.+.++...| .|...|||.+...
T Consensus 235 ipvi~~GGI~s~~da~~~l~~G--Ad~V~igr~~l~~ 269 (300)
T TIGR01037 235 IPIIGVGGITSFEDALEFLMAG--ASAVQVGTAVYYR 269 (300)
T ss_pred CCEEEECCCCCHHHHHHHHHcC--CCceeecHHHhcC
Confidence 679999999 788888888888 7899999998763
No 74
>PRK07695 transcriptional regulator TenI; Provisional
Probab=75.73 E-value=2.9 Score=35.54 Aligned_cols=35 Identities=11% Similarity=0.229 Sum_probs=31.7
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccccc
Q 026886 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
++.|++.||++++.+.++.+.| .|+++||+.+..+
T Consensus 149 ~ipvia~GGI~~~~~~~~~~~G--a~gvav~s~i~~~ 183 (201)
T PRK07695 149 SIPVIAIGGITPENTRDVLAAG--VSGIAVMSGIFSS 183 (201)
T ss_pred CCCEEEEcCCCHHHHHHHHHcC--CCEEEEEHHHhcC
Confidence 4689999999999999999988 6999999999864
No 75
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=74.72 E-value=11 Score=31.43 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=31.6
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
++.|++.||++.+.+.++.+.| +|++=||+.++...
T Consensus 166 ~~pi~v~GGI~~env~~~~~~g--ad~iivgsai~~~~ 201 (211)
T cd00429 166 NLLIEVDGGINLETIPLLAEAG--ADVLVAGSALFGSD 201 (211)
T ss_pred CeEEEEECCCCHHHHHHHHHcC--CCEEEECHHHhCCC
Confidence 4689999999999999999988 68899999998753
No 76
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=73.44 E-value=9.3 Score=34.25 Aligned_cols=46 Identities=13% Similarity=0.136 Sum_probs=35.6
Q ss_pred HHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccc
Q 026886 37 CEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 37 ~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
+++|+++++. ++ ++.|-+-||++++.+..+.+.| +|.|=+||.+..
T Consensus 167 ~~lr~~~~~~-------~~-~~~IeVDGGI~~~ti~~l~~aG--aD~~V~GSalF~ 212 (228)
T PRK08091 167 IQVENRLGNR-------RV-EKLISIDGSMTLELASYLKQHQ--IDWVVSGSALFS 212 (228)
T ss_pred HHHHHHHHhc-------CC-CceEEEECCCCHHHHHHHHHCC--CCEEEEChhhhC
Confidence 3455555553 54 4689999999999999999999 567878888865
No 77
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=73.06 E-value=19 Score=32.65 Aligned_cols=37 Identities=19% Similarity=0.342 Sum_probs=30.1
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCceeEEeecCcccccC
Q 026886 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~Iv~S~~Ld-e~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
++.|+++|++. .+.+.++.+.|. .|..++|+.+..+.
T Consensus 281 ~iPVi~~Ggi~t~~~a~~~l~~g~-aD~V~igR~~ladP 318 (327)
T cd02803 281 KIPVIAVGGIRDPEVAEEILAEGK-ADLVALGRALLADP 318 (327)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCC-CCeeeecHHHHhCc
Confidence 46899999997 888999888743 78999999988753
No 78
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=72.62 E-value=7.2 Score=36.43 Aligned_cols=75 Identities=16% Similarity=0.135 Sum_probs=51.8
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCCC-----------hHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHHHHH
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSGD-----------LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLD 72 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSGD-----------l~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~~I~ 72 (231)
...++.+++.|.+.|..+..| ..|. ...+.+++++.+ . .++.|+++|++ |.+.+.
T Consensus 234 ~ee~~~i~~~L~~~GvD~I~V--s~g~~~~~~~~~~~~~~~~~~~ik~~~----------~-~~iPVi~~Ggi~t~e~ae 300 (353)
T cd04735 234 MEDTLALVDKLADKGLDYLHI--SLWDFDRKSRRGRDDNQTIMELVKERI----------A-GRLPLIAVGSINTPDDAL 300 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEe--ccCccccccccCCcchHHHHHHHHHHh----------C-CCCCEEEECCCCCHHHHH
Confidence 567899999999988666544 2211 112222222221 1 35689999999 799999
Q ss_pred HHHhcCCceeEEeecCcccccC
Q 026886 73 ALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 73 ~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
++.+.| +|..++|..++.+.
T Consensus 301 ~~l~~g--aD~V~~gR~liadP 320 (353)
T cd04735 301 EALETG--ADLVAIGRGLLVDP 320 (353)
T ss_pred HHHHcC--CChHHHhHHHHhCc
Confidence 998886 89999999998753
No 79
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=71.94 E-value=12 Score=35.96 Aligned_cols=55 Identities=27% Similarity=0.363 Sum_probs=36.8
Q ss_pred HHHHHHHHHHHHHHhhCCCCCC-CeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccccCCCCcceeEE
Q 026886 35 LSCEARKFFRTIEKEFGVPDFE-KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVF 103 (231)
Q Consensus 35 ls~~~R~~ld~~~~~l~i~g~~-~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~Vy 103 (231)
.-.++.+.|++. |+. +|++++||+| +...+.....-|+ |.+++||-+.- +++|++
T Consensus 258 ~l~~a~~~L~~~-------glr~~V~Li~sGgl~t~~dv~kalaLGA--D~v~igt~~li-----AlGC~~ 314 (368)
T PF01645_consen 258 ALARAHQALVKN-------GLRDRVSLIASGGLRTGDDVAKALALGA--DAVYIGTAALI-----ALGCIQ 314 (368)
T ss_dssp HHHHHHHHHHCT-------T-CCCSEEEEESS--SHHHHHHHHHCT---SEEE-SHHHHH-----HCT--S
T ss_pred HHHHHHHHHHHc-------CCCCceEEEEeCCccCHHHHHHHHhcCC--CeeEecchhhh-----hcchHH
Confidence 344566777665 655 5899999998 5777777778885 89999998866 467763
No 80
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=71.88 E-value=19 Score=34.04 Aligned_cols=44 Identities=20% Similarity=0.249 Sum_probs=35.2
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCcceeEEEEeE
Q 026886 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVE 107 (231)
Q Consensus 58 v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~VyKLve 107 (231)
+.|+++|+++.+.+.++.++|. .|..|+|..++.+. +++-|+.+
T Consensus 293 ~pv~~~G~~~~~~ae~~i~~G~-~D~V~~gR~~iadP-----d~~~k~~~ 336 (362)
T PRK10605 293 GVIIGAGAYTAEKAETLIGKGL-IDAVAFGRDYIANP-----DLVARLQR 336 (362)
T ss_pred CCEEEeCCCCHHHHHHHHHcCC-CCEEEECHHhhhCc-----cHHHHHhc
Confidence 3688888999999999999886 79999999998853 45555543
No 81
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=71.73 E-value=14 Score=34.41 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=31.6
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
++.|+++|+++.+.+.++.+.|. +|..++|..+..+.
T Consensus 285 ~ipvi~~G~i~~~~a~~~l~~g~-~D~V~~gR~~ladP 321 (338)
T cd02933 285 KGPLIAAGGYDAESAEAALADGK-ADLVAFGRPFIANP 321 (338)
T ss_pred CCCEEEECCCCHHHHHHHHHcCC-CCEEEeCHhhhhCc
Confidence 35799999999999999988765 79999999998853
No 82
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=70.58 E-value=13 Score=36.71 Aligned_cols=131 Identities=18% Similarity=0.296 Sum_probs=73.5
Q ss_pred HHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
++.+..+.+|-+.|....-|=.-.|+-.+ +.+.+++.+++ ++++.|++.|-.+.+..+.+.+.|+..-..|
T Consensus 240 ~~~~~~~~~l~~ag~d~i~id~a~G~s~~----~~~~i~~ik~~-----~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 240 PEDIERAAALIEAGVDVLVVDSSQGNSIY----QIDMIKKLKSN-----YPHVDIIAGNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCchH----HHHHHHHHHhh-----CCCceEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 46678888898888665444332355322 22333333332 3578999999999999999999997644445
Q ss_pred ec------CcccccCCCCcceeEEEEeEE---CCcceeeccCCCCcCCCCCc--ceeeeecCCCCCceeeEEecCCC
Q 026886 86 IG------TYLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPCK--KRSYRLYGKEGYPLVDIMTGENE 151 (231)
Q Consensus 86 VG------T~Lvt~~~~p~l~~VyKLve~---~g~P~~KlS~~~~K~t~PG~--K~v~R~~~~~g~~~~D~i~l~~e 151 (231)
+| |+.++..+.|.+..++++.+. .|.|++ .+ |-...||. |.+ -.+++..+++-+++-.+|
T Consensus 311 ~g~Gs~~~t~~~~~~g~p~~~ai~~~~~~~~~~~v~vI--ad--GGi~~~~di~kAl--a~GA~~Vm~G~~~a~~~e 381 (495)
T PTZ00314 311 MGSGSICITQEVCAVGRPQASAVYHVARYARERGVPCI--AD--GGIKNSGDICKAL--ALGADCVMLGSLLAGTEE 381 (495)
T ss_pred CcCCcccccchhccCCCChHHHHHHHHHHHhhcCCeEE--ec--CCCCCHHHHHHHH--HcCCCEEEECchhccccc
Confidence 54 234444455666665555433 133333 22 33444443 221 124444455555555555
No 83
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=70.12 E-value=13 Score=32.37 Aligned_cols=76 Identities=16% Similarity=0.093 Sum_probs=48.9
Q ss_pred HHHHHHHHHHHhcCCCccEE--EeCCCChHHHHHH-HHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhc-CCc
Q 026886 6 PNFCAVALALNDLGYKAVGI--RLDSGDLAYLSCE-ARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQ-GHE 80 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~GV--RlDSGDl~~ls~~-~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~~I~~L~~~-ga~ 80 (231)
...+..++.|.+.|....-| |...|...-.-.+ ++++.+. .++.+++|||+ +.+.+.++.+. |
T Consensus 149 ~~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~i~~~----------~~~pvia~GGi~~~~di~~~l~~~g-- 216 (243)
T cd04731 149 LDAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRAVSSA----------VNIPVIASGGAGKPEHFVEAFEEGG-- 216 (243)
T ss_pred CCHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHHHHhh----------CCCCEEEeCCCCCHHHHHHHHHhCC--
Confidence 34677788888888776555 6554432100111 2222221 35789999999 68889988876 6
Q ss_pred eeEEeecCccccc
Q 026886 81 VDAFGIGTYLVTC 93 (231)
Q Consensus 81 id~fGVGT~Lvt~ 93 (231)
+|+.-||+.|-..
T Consensus 217 ~dgv~vg~al~~~ 229 (243)
T cd04731 217 ADAALAASIFHFG 229 (243)
T ss_pred CCEEEEeHHHHcC
Confidence 7888899888653
No 84
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=70.04 E-value=7.6 Score=37.98 Aligned_cols=129 Identities=21% Similarity=0.248 Sum_probs=77.1
Q ss_pred HHHHHHHHHHhcCCCccEEEeCC--CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEE
Q 026886 7 NFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~f 84 (231)
.....+++|.+.|.+ .+-+|+ |.+.. +...+++.+. -++++.|++-|..+.+.+..|.+.|+.+-..
T Consensus 228 ~~~e~a~~L~~agvd--vivvD~a~g~~~~----vl~~i~~i~~-----~~p~~~vi~g~v~t~e~a~~l~~aGad~i~v 296 (486)
T PRK05567 228 DNEERAEALVEAGVD--VLVVDTAHGHSEG----VLDRVREIKA-----KYPDVQIIAGNVATAEAARALIEAGADAVKV 296 (486)
T ss_pred chHHHHHHHHHhCCC--EEEEECCCCcchh----HHHHHHHHHh-----hCCCCCEEEeccCCHHHHHHHHHcCCCEEEE
Confidence 446788888888866 567785 66433 3333343333 2357899999999999999999999754434
Q ss_pred eecC------cccccCCCCcceeEEEEeEE---CCcceeeccCCCCcCCCCCc--ceeeeecCCCCCceeeEEecCCCC
Q 026886 85 GIGT------YLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPCK--KRSYRLYGKEGYPLVDIMTGENEP 152 (231)
Q Consensus 85 GVGT------~Lvt~~~~p~l~~VyKLve~---~g~P~~KlS~~~~K~t~PG~--K~v~R~~~~~g~~~~D~i~l~~e~ 152 (231)
|+|. +.++..+.|.+..++++.+. .|.|++ .+ |-...||. |.+ . .+++-.+++-+++-.+|.
T Consensus 297 g~g~gs~~~~r~~~~~g~p~~~~~~~~~~~~~~~~~~vi--ad--GGi~~~~di~kAl-a-~GA~~v~~G~~~a~~~e~ 369 (486)
T PRK05567 297 GIGPGSICTTRIVAGVGVPQITAIADAAEAAKKYGIPVI--AD--GGIRYSGDIAKAL-A-AGASAVMLGSMLAGTEEA 369 (486)
T ss_pred CCCCCccccceeecCCCcCHHHHHHHHHHHhccCCCeEE--Ec--CCCCCHHHHHHHH-H-hCCCEEEECccccccccC
Confidence 4442 33344445666666665542 133433 22 34444553 222 2 244555566677777774
No 85
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=69.93 E-value=13 Score=35.82 Aligned_cols=36 Identities=17% Similarity=0.329 Sum_probs=31.5
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccccc
Q 026886 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 56 ~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
.++.|.++||++.+.+.++.+.| .|.+-+|+.++.+
T Consensus 329 ~~~~I~VdGGI~~eti~~l~~aG--ADivVVGsaIf~a 364 (391)
T PRK13307 329 GKILVAVAGGVRVENVEEALKAG--ADILVVGRAITKS 364 (391)
T ss_pred CCCcEEEECCcCHHHHHHHHHcC--CCEEEEeHHHhCC
Confidence 35789999999999999999998 5789999998764
No 86
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=69.86 E-value=25 Score=30.02 Aligned_cols=39 Identities=15% Similarity=0.308 Sum_probs=32.4
Q ss_pred CeEEEEeCCCCH-HHHHHHHhcCCceeEEeecCcccccCCCC
Q 026886 57 KMSITASNDLNE-ETLDALNKQGHEVDAFGIGTYLVTCYAQA 97 (231)
Q Consensus 57 ~v~Iv~S~~Lde-~~I~~L~~~ga~id~fGVGT~Lvt~~~~p 97 (231)
++.|++.||++. +.+.++.+.| .|+..|||.++.....|
T Consensus 156 ~~Pvi~~GGI~~~~~v~~~l~~G--adgV~vgS~l~~~~e~~ 195 (236)
T cd04730 156 DIPVIAAGGIADGRGIAAALALG--ADGVQMGTRFLATEESG 195 (236)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CcEEEEchhhhcCcccC
Confidence 358999999987 8899988877 78999999998865543
No 87
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=69.02 E-value=21 Score=32.95 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=30.2
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
++.|++++++ +.+.+.++.++|. .|..++|..+..+.
T Consensus 292 ~iPVi~~G~i~t~~~a~~~l~~g~-aD~V~lgR~~iadP 329 (338)
T cd04733 292 KTPLMVTGGFRTRAAMEQALASGA-VDGIGLARPLALEP 329 (338)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCC-CCeeeeChHhhhCc
Confidence 4578889998 6888888888775 78999999888754
No 88
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=68.59 E-value=20 Score=29.67 Aligned_cols=39 Identities=15% Similarity=0.273 Sum_probs=31.4
Q ss_pred CCCCCCeEEEEeCCCC------HHHHHHHHhcCCceeEEeecCcc
Q 026886 52 VPDFEKMSITASNDLN------EETLDALNKQGHEVDAFGIGTYL 90 (231)
Q Consensus 52 i~g~~~v~Iv~S~~Ld------e~~I~~L~~~ga~id~fGVGT~L 90 (231)
.++.+++-|++|+|.+ ++.+..+.+.|..+-+.|||+..
T Consensus 100 R~~~~kv~illTDG~~~~~~~~~~~~~~~k~~gv~v~~Vgvg~~~ 144 (177)
T cd01469 100 RKDATKVLVVITDGESHDDPLLKDVIPQAEREGIIRYAIGVGGHF 144 (177)
T ss_pred CCCCCeEEEEEeCCCCCCccccHHHHHHHHHCCcEEEEEEecccc
Confidence 4467889999999886 45577788889999999999864
No 89
>PRK14057 epimerase; Provisional
Probab=68.10 E-value=13 Score=33.90 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=30.5
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccc
Q 026886 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
++ ++.|-+-||++++.|.++.+.| +|.|=.||.+..
T Consensus 191 ~~-~~~IeVDGGI~~~ti~~l~~aG--ad~~V~GSalF~ 226 (254)
T PRK14057 191 RE-GKIIVIDGSLTQDQLPSLIAQG--IDRVVSGSALFR 226 (254)
T ss_pred CC-CceEEEECCCCHHHHHHHHHCC--CCEEEEChHhhC
Confidence 54 4699999999999999999999 567777888864
No 90
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=68.02 E-value=14 Score=35.11 Aligned_cols=74 Identities=15% Similarity=0.242 Sum_probs=51.2
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCCC-----------------hHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSGD-----------------LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL- 66 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSGD-----------------l~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L- 66 (231)
+..++.+++.|.+.|..+.-|- .|. ...+++++|+.+ ++.++++|++
T Consensus 251 ~e~~~~~~~~l~~~gvD~l~vs--~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~~-------------~~pvi~~G~i~ 315 (382)
T cd02931 251 LEEGLKAAKILEEAGYDALDVD--AGSYDAWYWNHPPMYQKKGMYLPYCKALKEVV-------------DVPVIMAGRME 315 (382)
T ss_pred HHHHHHHHHHHHHhCCCEEEeC--CCCCcccccccCCccCCcchhHHHHHHHHHHC-------------CCCEEEeCCCC
Confidence 4677899999998886655442 221 112333333321 3479999999
Q ss_pred CHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 67 NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 67 de~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
+.+.+.+..+.|. .|..|+|..+..+.
T Consensus 316 ~~~~~~~~l~~g~-~D~V~~gR~~ladP 342 (382)
T cd02931 316 DPELASEAINEGI-ADMISLGRPLLADP 342 (382)
T ss_pred CHHHHHHHHHcCC-CCeeeechHhHhCc
Confidence 7888999888775 79999999998854
No 91
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=67.91 E-value=12 Score=33.51 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=30.1
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCc-ccc
Q 026886 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTY-LVT 92 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~-Lvt 92 (231)
++ ++.|-+-||++++.|.++.+.| +|.|=+||+ +..
T Consensus 167 ~~-~~~IeVDGGI~~~~i~~~~~aG--ad~~V~Gss~iF~ 203 (229)
T PRK09722 167 GL-EYLIEVDGSCNQKTYEKLMEAG--ADVFIVGTSGLFN 203 (229)
T ss_pred CC-CeEEEEECCCCHHHHHHHHHcC--CCEEEEChHHHcC
Confidence 54 4699999999999999999999 577878865 654
No 92
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=67.85 E-value=19 Score=32.43 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=30.6
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCccccc
Q 026886 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
++.|+++|++ +.+.+.++...| .|...|||-+...
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aG--Ad~V~igr~ll~~ 269 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAG--ASAVQVGTANFYD 269 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCceeEcHHHhcC
Confidence 4689999999 899999999888 5899999998763
No 93
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=67.82 E-value=34 Score=30.63 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=30.6
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCccccc
Q 026886 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
++.|+++|++ |.+.+.++.+.| .|..+|||.+...
T Consensus 231 ~ipii~~GGI~~~~da~~~l~~G--Ad~V~igra~l~~ 266 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLMAG--ASAVQVGTANFVD 266 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCEEEEchhhhcC
Confidence 4689999999 789999998899 5999999999874
No 94
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=67.44 E-value=13 Score=34.68 Aligned_cols=76 Identities=12% Similarity=0.134 Sum_probs=50.6
Q ss_pred hHHHHHHHHHHHhcC-CCccEEE---eC-------------CCC--hHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCC
Q 026886 5 VPNFCAVALALNDLG-YKAVGIR---LD-------------SGD--LAYLSCEARKFFRTIEKEFGVPDFEKMSITASND 65 (231)
Q Consensus 5 vpnai~Va~~L~~~g-~~~~GVR---lD-------------SGD--l~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~ 65 (231)
...++.+++.|.+.| ..+.-|- .. .+. -.++++++++. -++.|+++|+
T Consensus 227 ~~e~~~~~~~l~~~G~vd~i~vs~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-------------~~ipvi~~G~ 293 (343)
T cd04734 227 PDEALEIAARLAAEGLIDYVNVSAGSYYTLLGLAHVVPSMGMPPGPFLPLAARIKQA-------------VDLPVFHAGR 293 (343)
T ss_pred HHHHHHHHHHHHhcCCCCEEEeCCCCCCcccccccccCCCCCCcchhHHHHHHHHHH-------------cCCCEEeeCC
Confidence 467899999999987 5654331 11 111 01223333322 2357999999
Q ss_pred C-CHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 66 L-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 66 L-de~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
+ +.+.+.++.+.+. +|..++|.-+..+.
T Consensus 294 i~~~~~~~~~l~~~~-~D~V~~gR~~ladP 322 (343)
T cd04734 294 IRDPAEAEQALAAGH-ADMVGMTRAHIADP 322 (343)
T ss_pred CCCHHHHHHHHHcCC-CCeeeecHHhHhCc
Confidence 8 8888999988764 89999999998864
No 95
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=66.75 E-value=34 Score=29.10 Aligned_cols=37 Identities=22% Similarity=0.160 Sum_probs=30.4
Q ss_pred CCeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCccccc
Q 026886 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 56 ~~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
.++.|+++|++ +.+.+.++.+.+ -+|+..+|+.+..+
T Consensus 182 ~~ipvi~~Ggi~~~~d~~~~l~~~-gad~V~igr~~l~~ 219 (231)
T cd02801 182 VSIPVIANGDIFSLEDALRCLEQT-GVDGVMIGRGALGN 219 (231)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhc-CCCEEEEcHHhHhC
Confidence 45799999999 788899988863 17899999988775
No 96
>PLN02334 ribulose-phosphate 3-epimerase
Probab=66.74 E-value=12 Score=32.62 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=30.9
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccccc
Q 026886 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
+..|++-||++++.+.++.+.| +|.+=||+.+...
T Consensus 174 ~~~I~a~GGI~~e~i~~l~~aG--ad~vvvgsai~~~ 208 (229)
T PLN02334 174 ELDIEVDGGVGPSTIDKAAEAG--ANVIVAGSAVFGA 208 (229)
T ss_pred CCcEEEeCCCCHHHHHHHHHcC--CCEEEEChHHhCC
Confidence 3579999999999999999999 6899999998754
No 97
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=66.46 E-value=20 Score=36.46 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=29.1
Q ss_pred CCCCeEEEEeCCCCH------HHHHHHHhcCCceeEEeecCc
Q 026886 54 DFEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde------~~I~~L~~~ga~id~fGVGT~ 89 (231)
...++.|++|++.+. +.++.|.+.|+.|-++|||..
T Consensus 148 nvpKVVILLTDG~sns~~dvleaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 148 NAIQLVILMTDGIPNSKYRALEESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred CCceEEEEEecCCCCCcccHHHHHHHHHHCCCEEEEEEeCCC
Confidence 455899999999962 335788889999999999973
No 98
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=65.22 E-value=23 Score=31.86 Aligned_cols=36 Identities=11% Similarity=0.235 Sum_probs=32.3
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCC
Q 026886 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (231)
Q Consensus 58 v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~ 95 (231)
+++.+.|||+++.+..+...| .+.|=||..++.+.+
T Consensus 165 ~~vAVaGGI~~~~i~~~~~~~--~~ivIvGraIt~a~d 200 (217)
T COG0269 165 AKVAVAGGITPEDIPLFKGIG--ADIVIVGRAITGAKD 200 (217)
T ss_pred ceEEEecCCCHHHHHHHhcCC--CCEEEECchhcCCCC
Confidence 699999999999999999998 778889999988654
No 99
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=65.05 E-value=12 Score=35.10 Aligned_cols=74 Identities=15% Similarity=0.215 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCCC------------hHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHHHH
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSGD------------LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETL 71 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSGD------------l~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~~I 71 (231)
+..++.+++.|.+.|..+.-| -.|. ..++++++|+. .++.|+++|++ +.+.+
T Consensus 226 ~~e~~~i~~~l~~~gvD~i~v--s~g~~~~~~~~~~~~~~~~~~~~ik~~-------------~~ipVi~~G~i~~~~~a 290 (337)
T PRK13523 226 VQDYVQYAKWMKEQGVDLIDV--SSGAVVPARIDVYPGYQVPFAEHIREH-------------ANIATGAVGLITSGAQA 290 (337)
T ss_pred HHHHHHHHHHHHHcCCCEEEe--CCCCCCCCCCCCCccccHHHHHHHHhh-------------cCCcEEEeCCCCCHHHH
Confidence 567888888888877554333 2221 12333333332 23578899998 68888
Q ss_pred HHHHhcCCceeEEeecCcccccC
Q 026886 72 DALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 72 ~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
.++.++|. .|..++|..++.+.
T Consensus 291 ~~~l~~g~-~D~V~~gR~~iadP 312 (337)
T PRK13523 291 EEILQNNR-ADLIFIGRELLRNP 312 (337)
T ss_pred HHHHHcCC-CChHHhhHHHHhCc
Confidence 89888775 78999999988754
No 100
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=64.71 E-value=34 Score=32.09 Aligned_cols=64 Identities=11% Similarity=0.192 Sum_probs=47.9
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCC----------------------CCeEEE--EeCCC-CHHHHHHHHhcCCceeE
Q 026886 29 SGDLAYLSCEARKFFRTIEKEFGVPDF----------------------EKMSIT--ASNDL-NEETLDALNKQGHEVDA 83 (231)
Q Consensus 29 SGDl~~ls~~~R~~ld~~~~~l~i~g~----------------------~~v~Iv--~S~~L-de~~I~~L~~~ga~id~ 83 (231)
+||..+-.+.+|.+..+.+.-.|...- .++.++ +.|++ +.+.+..+.+.| .|+
T Consensus 153 tg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TPedaa~vme~G--Adg 230 (293)
T PRK04180 153 TGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATPADAALMMQLG--ADG 230 (293)
T ss_pred CccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCHHHHHHHHHhC--CCE
Confidence 788888888888888777654444211 135666 89999 999999999888 678
Q ss_pred EeecCcccccC
Q 026886 84 FGIGTYLVTCY 94 (231)
Q Consensus 84 fGVGT~Lvt~~ 94 (231)
+-||+.+..+.
T Consensus 231 VaVGSaI~ks~ 241 (293)
T PRK04180 231 VFVGSGIFKSG 241 (293)
T ss_pred EEEcHHhhcCC
Confidence 88999987653
No 101
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=64.10 E-value=39 Score=32.15 Aligned_cols=80 Identities=15% Similarity=0.323 Sum_probs=57.2
Q ss_pred HHHHHHHh---cCCCccEEEeCCCChHHHH-HHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCceeEE
Q 026886 10 AVALALND---LGYKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 10 ~Va~~L~~---~g~~~~GVRlDSGDl~~ls-~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~id~f 84 (231)
++.+|++. .+..+.-|-+-.|.+..++ .+++++++.....+++.+-..+.+-+. ++++.+.++.|.+.|...-++
T Consensus 52 ~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~Gvnrisl 131 (400)
T PRK07379 52 VLCQEIAITPSFGQPLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSL 131 (400)
T ss_pred HHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEE
Confidence 45555543 2345667778888888774 458888888887787765455555443 689999999999999777777
Q ss_pred eecCc
Q 026886 85 GIGTY 89 (231)
Q Consensus 85 GVGT~ 89 (231)
||=|.
T Consensus 132 GvQS~ 136 (400)
T PRK07379 132 GVQAF 136 (400)
T ss_pred EcccC
Confidence 77553
No 102
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=63.88 E-value=13 Score=33.38 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=31.1
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
+..|-+-||+|.+.+..+.+.| +|.|=.||.+-...
T Consensus 169 ~~~IeVDGGI~~~t~~~~~~AG--ad~~VaGSalF~~~ 204 (220)
T COG0036 169 DILIEVDGGINLETIKQLAAAG--ADVFVAGSALFGAD 204 (220)
T ss_pred CeEEEEeCCcCHHHHHHHHHcC--CCEEEEEEEEeCCc
Confidence 7799999999999999999999 57777888776643
No 103
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=63.42 E-value=9.4 Score=37.68 Aligned_cols=116 Identities=20% Similarity=0.276 Sum_probs=79.0
Q ss_pred ccEEEeCC--CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccccc------
Q 026886 22 AVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC------ 93 (231)
Q Consensus 22 ~~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~------ 93 (231)
++-|=||| |+-.|+.. +.+...+ -+++..||+.|-..-+-.++|.++|+..--.|+|+-=+..
T Consensus 264 vdvviLDSSqGnS~~qie-mik~iK~--------~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma 334 (503)
T KOG2550|consen 264 VDVVILDSSQGNSIYQLE-MIKYIKE--------TYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMA 334 (503)
T ss_pred CcEEEEecCCCcchhHHH-HHHHHHh--------hCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeee
Confidence 45788998 66555543 3444444 4789999999999999999999999987777887654332
Q ss_pred CCCCcceeEEEEeEEC---CcceeeccCCCCcCCCCCc--ceeeeecCCCCCceeeEEecCCCC
Q 026886 94 YAQAALGCVFKLVEIN---KQPRIKLSEDVSKVSIPCK--KRSYRLYGKEGYPLVDIMTGENEP 152 (231)
Q Consensus 94 ~~~p~l~~VyKLve~~---g~P~~KlS~~~~K~t~PG~--K~v~R~~~~~g~~~~D~i~l~~e~ 152 (231)
-+.|-...|||..++. |.|+| +| |-.+++|. |.+ - .+++-.+.+-+++-..|.
T Consensus 335 ~GrpQ~TAVy~va~~A~q~gvpvi--AD--GGiq~~Ghi~KAl-~-lGAstVMmG~lLAgtTEa 392 (503)
T KOG2550|consen 335 CGRPQGTAVYKVAEFANQFGVPCI--AD--GGIQNVGHVVKAL-G-LGASTVMMGGLLAGTTEA 392 (503)
T ss_pred ccCCcccchhhHHHHHHhcCCcee--ec--CCcCccchhHhhh-h-cCchhheecceeeeeecc
Confidence 2467788999998885 56887 44 45566664 222 1 123334455677666664
No 104
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=63.37 E-value=6.4 Score=34.34 Aligned_cols=46 Identities=26% Similarity=0.396 Sum_probs=35.4
Q ss_pred HHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccc
Q 026886 37 CEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 37 ~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
+++|+++++. | .++.|.+=||++++.+..+.+.| +|.|=+||.+..
T Consensus 154 ~~l~~~~~~~-------~-~~~~I~vDGGI~~~~~~~~~~aG--ad~~V~Gs~iF~ 199 (201)
T PF00834_consen 154 RELRKLIPEN-------G-LDFEIEVDGGINEENIKQLVEAG--ADIFVAGSAIFK 199 (201)
T ss_dssp HHHHHHHHHH-------T-CGSEEEEESSESTTTHHHHHHHT----EEEESHHHHT
T ss_pred HHHHHHHHhc-------C-CceEEEEECCCCHHHHHHHHHcC--CCEEEECHHHhC
Confidence 3466667665 5 55699999999999999999999 567778887654
No 105
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=63.15 E-value=30 Score=29.53 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=31.1
Q ss_pred CCeEEEEeCCCC-HHHHHHHHhcCCceeEEeecCcccccC
Q 026886 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 56 ~~v~Iv~S~~Ld-e~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
.++.+++++|+. .+.+.++.+.| .|++-||+.|+...
T Consensus 171 ~~~pvia~gGI~s~edi~~~~~~G--a~gvivGsai~~~~ 208 (217)
T cd00331 171 KDVILVSESGISTPEDVKRLAEAG--ADAVLIGESLMRAP 208 (217)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcC--CCEEEECHHHcCCC
Confidence 456899999995 59999999988 68999999998754
No 106
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=62.86 E-value=45 Score=31.60 Aligned_cols=71 Identities=13% Similarity=0.279 Sum_probs=56.5
Q ss_pred CCCccEEEeCCCChHHHH-HHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCceeEEeecCc
Q 026886 19 GYKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 19 g~~~~GVRlDSGDl~~ls-~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~id~fGVGT~ 89 (231)
|.++.-|-+=-|++..|+ .++.++++..++.|.+..-..+.+-+. ++++.+.+..|.+.|...-++||=|.
T Consensus 71 ~~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~ 143 (394)
T PRK08898 71 GRQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSF 143 (394)
T ss_pred CCceeEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccC
Confidence 345667778889998885 558888888888888766667777776 88999999999999987777777653
No 107
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=62.52 E-value=29 Score=33.17 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=31.6
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 58 v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
+.|++.||++.+.+.++.+.| +|.+.+|+.|....
T Consensus 163 iPI~a~GGI~~~n~~~~l~aG--Adgv~vGsaI~~~~ 197 (430)
T PRK07028 163 IPIAVAGGLDAETAAKAVAAG--ADIVIVGGNIIKSA 197 (430)
T ss_pred CcEEEECCCCHHHHHHHHHcC--CCEEEEChHHcCCC
Confidence 689999999999999999999 58999999998753
No 108
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=62.20 E-value=27 Score=31.29 Aligned_cols=73 Identities=23% Similarity=0.332 Sum_probs=45.7
Q ss_pred HHHHHHHHHHhcCCCccEEEeCCCChH--HHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCCceeE
Q 026886 7 NFCAVALALNDLGYKAVGIRLDSGDLA--YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDA 83 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlDSGDl~--~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Ld-e~~I~~L~~~ga~id~ 83 (231)
+.+.+|+++.+.|-. ||-+|.+..- +...++.+.+.++ ++++.|+.+||+. .+.+.++.+.| .|+
T Consensus 149 ~~~~~a~~l~~aGad--~i~Vd~~~~g~~~a~~~~I~~i~~~--------~~~ipIIgNGgI~s~eda~e~l~~G--Ad~ 216 (231)
T TIGR00736 149 DELIDALNLVDDGFD--GIHVDAMYPGKPYADMDLLKILSEE--------FNDKIIIGNNSIDDIESAKEMLKAG--ADF 216 (231)
T ss_pred hHHHHHHHHHHcCCC--EEEEeeCCCCCchhhHHHHHHHHHh--------cCCCcEEEECCcCCHHHHHHHHHhC--CCe
Confidence 677899999988854 5565654321 1222322233332 2336799999985 57777777787 577
Q ss_pred EeecCccc
Q 026886 84 FGIGTYLV 91 (231)
Q Consensus 84 fGVGT~Lv 91 (231)
.-||+.+.
T Consensus 217 VmvgR~~l 224 (231)
T TIGR00736 217 VSVARAIL 224 (231)
T ss_pred EEEcHhhc
Confidence 77887654
No 109
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=62.16 E-value=9.5 Score=36.35 Aligned_cols=49 Identities=16% Similarity=0.276 Sum_probs=36.1
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEeCCCCH-----------HHHHHHHhcCCceeEEeecCccccc
Q 026886 39 ARKFFRTIEKEFGVPDFEKMSITASNDLNE-----------ETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 39 ~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde-----------~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
++..|+-|++ ..++.+.+ =|+-+. .-|++|.++|+|||+.|+=.|+...
T Consensus 173 I~~aF~~Are-----adP~AkL~-~NDY~ie~~~~kr~~~~nlI~~LkekG~pIDgiG~QsH~~~~ 232 (345)
T COG3693 173 IKLAFHIARE-----ADPDAKLV-INDYSIEGNPAKRNYVLNLIEELKEKGAPIDGIGIQSHFSGD 232 (345)
T ss_pred HHHHHHHHHh-----hCCCceEE-eecccccCChHHHHHHHHHHHHHHHCCCCccceeeeeeecCC
Confidence 6677777766 56785555 344421 2688899999999999999998765
No 110
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=61.47 E-value=28 Score=30.08 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=25.5
Q ss_pred CeEEEEeCCCC-HHHHHH-HHhcCCceeEEeecCcc
Q 026886 57 KMSITASNDLN-EETLDA-LNKQGHEVDAFGIGTYL 90 (231)
Q Consensus 57 ~v~Iv~S~~Ld-e~~I~~-L~~~ga~id~fGVGT~L 90 (231)
++.|+++||+. .+.+.+ +.+.| +|+.-|||.|
T Consensus 197 ~ipvia~GGi~s~~di~~~l~~~g--adgV~vg~a~ 230 (232)
T TIGR03572 197 SIPVIALGGAGSLDDLVEVALEAG--ASAVAAASLF 230 (232)
T ss_pred CCCEEEECCCCCHHHHHHHHHHcC--CCEEEEehhh
Confidence 46899999998 667777 77777 7888899876
No 111
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=61.21 E-value=44 Score=31.15 Aligned_cols=76 Identities=12% Similarity=0.194 Sum_probs=49.0
Q ss_pred hcCCCccEEEeC--CCChHHHHHHHHHHHHHHHHhhCCC-------------CC---------CCeEEE--EeCCC-CHH
Q 026886 17 DLGYKAVGIRLD--SGDLAYLSCEARKFFRTIEKEFGVP-------------DF---------EKMSIT--ASNDL-NEE 69 (231)
Q Consensus 17 ~~g~~~~GVRlD--SGDl~~ls~~~R~~ld~~~~~l~i~-------------g~---------~~v~Iv--~S~~L-de~ 69 (231)
++|..+.|--+. +|+.++-.+.+|.+-.+.+...|.. ++ .++.|+ +.|++ +++
T Consensus 130 ~~Gad~I~TTl~gyT~~~~~~~~~~~~i~~~i~~~~gyt~~t~~~~~~~~~~d~elLk~l~~~~~iPVV~iAeGGI~Tpe 209 (283)
T cd04727 130 SEGAAMIRTKGEAGTGNVVEAVRHMRAVNGEIRKLQSMSEEELYAVAKEIQAPYELVKETAKLGRLPVVNFAAGGVATPA 209 (283)
T ss_pred HCCCCEEEecCCCCCCcHHHHHHHHHHHHHHHHHHhCCCHHHHHhhhcccCCCHHHHHHHHHhcCCCeEEEEeCCCCCHH
Confidence 346666555553 4565555555555555544332221 00 135665 99999 999
Q ss_pred HHHHHHhcCCceeEEeecCcccccC
Q 026886 70 TLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 70 ~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
.+.++.+.| .|++-||+.++.+.
T Consensus 210 na~~v~e~G--AdgVaVGSAI~~a~ 232 (283)
T cd04727 210 DAALMMQLG--ADGVFVGSGIFKSE 232 (283)
T ss_pred HHHHHHHcC--CCEEEEcHHhhcCC
Confidence 999999988 68999999997643
No 112
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=60.06 E-value=38 Score=32.96 Aligned_cols=133 Identities=14% Similarity=0.209 Sum_probs=79.6
Q ss_pred HHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
+...+-+.+|-+.|..+.- +|+.+-. ++.+.+++.+.++ -++++.|++.|-.+.+..+.+.+.|+..-..|
T Consensus 152 ~~~~~~v~~lv~aGvDvI~--iD~a~g~--~~~~~~~v~~ik~-----~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 152 IDTIERVEELVKAHVDILV--IDSAHGH--STRIIELVKKIKT-----KYPNLDLIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHHHHhcCCCEEE--EECCCCC--ChhHHHHHHHHHh-----hCCCCcEEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 5667888888888866644 5875421 4444445555444 34667899999999999999999997544445
Q ss_pred ec--C----cccccCCCCcceeEEEEeEE---CCcceeeccCCCCcCCCCCc-ceeeeecCCCCCceeeEEecCCCC
Q 026886 86 IG--T----YLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPCK-KRSYRLYGKEGYPLVDIMTGENEP 152 (231)
Q Consensus 86 VG--T----~Lvt~~~~p~l~~VyKLve~---~g~P~~KlS~~~~K~t~PG~-K~v~R~~~~~g~~~~D~i~l~~e~ 152 (231)
+| + +.++..+.|.+..++.+.++ -+.|++ .+ |.+..||. .+.+. .+++..+++-.++-.+|.
T Consensus 223 ~g~Gs~c~tr~~~g~g~p~ltai~~v~~~~~~~~vpVI--Ad--GGI~~~~Di~KALa-lGA~aVmvGs~~agt~Es 294 (404)
T PRK06843 223 IGPGSICTTRIVAGVGVPQITAICDVYEVCKNTNICII--AD--GGIRFSGDVVKAIA-AGADSVMIGNLFAGTKES 294 (404)
T ss_pred CCCCcCCcceeecCCCCChHHHHHHHHHHHhhcCCeEE--Ee--CCCCCHHHHHHHHH-cCCCEEEEcceeeeeecC
Confidence 53 2 33333344655544444332 244654 33 55555664 22222 345556666677776664
No 113
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=59.47 E-value=2.8 Score=33.18 Aligned_cols=56 Identities=23% Similarity=0.421 Sum_probs=37.6
Q ss_pred cEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcc
Q 026886 23 VGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYL 90 (231)
Q Consensus 23 ~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~L 90 (231)
.|||+|||- +-.-++--.+|.. = .|||+.|.=-++.+.+|...=.+...-||-|++
T Consensus 29 ~gvR~Dt~~--~~G~~v~~~yDsm---------l-AKliv~g~~R~~A~~rl~~aL~e~~i~Gv~TN~ 84 (107)
T smart00878 29 PGVRVDSGV--YEGYEVPPYYDSM---------I-AKLIVHGETREEAIARLRRALDEFRIEGVKTNI 84 (107)
T ss_pred CCEEEEccC--cCCCCcCcchhhh---------c-eEEEEEcCCHHHHHHHHHHHHHhCEEECccCCH
Confidence 379999983 1111233344442 1 388888888888899888865666677888876
No 114
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=59.32 E-value=44 Score=28.36 Aligned_cols=36 Identities=11% Similarity=0.195 Sum_probs=28.7
Q ss_pred CCCCeEEEEeCCCCH--------HHHHHHHhcCCceeEEeecCc
Q 026886 54 DFEKMSITASNDLNE--------ETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde--------~~I~~L~~~ga~id~fGVGT~ 89 (231)
..+++-|++++|-+- +..+.|++.|..+-+.|||+.
T Consensus 107 ~~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~~ 150 (192)
T cd01473 107 DAPKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGAA 150 (192)
T ss_pred cCCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEeccc
Confidence 358899999999873 335578889999999999963
No 115
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=59.31 E-value=42 Score=30.19 Aligned_cols=35 Identities=29% Similarity=0.398 Sum_probs=28.7
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 58 v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
..|..||..+.+.+..+.+.| .|++-|||.|+.+.
T Consensus 213 ~vIaegGI~t~ed~~~~~~~G--ad~vlVGsaI~~~~ 247 (260)
T PRK00278 213 LVVSESGIFTPEDLKRLAKAG--ADAVLVGESLMRAD 247 (260)
T ss_pred EEEEEeCCCCHHHHHHHHHcC--CCEEEECHHHcCCC
Confidence 355556666899999999998 58999999998764
No 116
>PRK04302 triosephosphate isomerase; Provisional
Probab=59.29 E-value=32 Score=29.85 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=30.1
Q ss_pred CCeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 56 ~~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
.++.|++-+++ +.+.+..+.+.| +|++-|||.++...
T Consensus 172 ~~~pvi~GggI~~~e~~~~~~~~g--adGvlVGsa~l~~~ 209 (223)
T PRK04302 172 PDVKVLCGAGISTGEDVKAALELG--ADGVLLASGVVKAK 209 (223)
T ss_pred CCCEEEEECCCCCHHHHHHHHcCC--CCEEEEehHHhCCc
Confidence 46799999999 667777777777 79999999998753
No 117
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=59.00 E-value=37 Score=28.59 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=27.0
Q ss_pred CCCCCeEEEEeCCCCH------HHHHHHHhc-----CCceeEEeecCc
Q 026886 53 PDFEKMSITASNDLNE------ETLDALNKQ-----GHEVDAFGIGTY 89 (231)
Q Consensus 53 ~g~~~v~Iv~S~~Lde------~~I~~L~~~-----ga~id~fGVGT~ 89 (231)
++-...-|++|+|.+. +.+.++.+. +..+..+|+|+.
T Consensus 132 ~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igiG~~ 179 (206)
T cd01456 132 PGRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKVNVIDFGGD 179 (206)
T ss_pred CCCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceEEEEEecCc
Confidence 4544779999999863 445556543 778999999986
No 118
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=58.44 E-value=33 Score=30.40 Aligned_cols=73 Identities=21% Similarity=0.216 Sum_probs=43.7
Q ss_pred Cch-HHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCCc
Q 026886 3 SGV-PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHE 80 (231)
Q Consensus 3 SGv-pnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~~I~~L~~~ga~ 80 (231)
.|+ .+.+++|+.|.+.|.. +|=.|++.....+. -+.+.++ - .++.|+++||+ +.+.+.++.+.|
T Consensus 148 ~g~~~~~~~la~~l~~aG~d--~ihv~~~~~g~~ad--~~~I~~i-------~-~~ipVIgnGgI~s~eda~~~l~~G-- 213 (233)
T cd02911 148 AGVDVDDEELARLIEKAGAD--IIHVDAMDPGNHAD--LKKIRDI-------S-TELFIIGNNSVTTIESAKEMFSYG-- 213 (233)
T ss_pred CCcCcCHHHHHHHHHHhCCC--EEEECcCCCCCCCc--HHHHHHh-------c-CCCEEEEECCcCCHHHHHHHHHcC--
Confidence 344 4667777777777755 34445543210000 0122222 1 35689999998 788888888887
Q ss_pred eeEEeecCc
Q 026886 81 VDAFGIGTY 89 (231)
Q Consensus 81 id~fGVGT~ 89 (231)
.|+.-||+-
T Consensus 214 aD~VmiGR~ 222 (233)
T cd02911 214 ADMVSVARA 222 (233)
T ss_pred CCEEEEcCC
Confidence 677777776
No 119
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=58.41 E-value=41 Score=29.95 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=30.5
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCceeEEeecCccccc
Q 026886 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~Iv~S~~Ld-e~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
++.|+++|+++ .+.+.++...| .|..+|||.+...
T Consensus 243 ~ipiia~GGI~~~~da~~~l~~G--Ad~V~vg~a~~~~ 278 (289)
T cd02810 243 DIPIIGVGGIDSGEDVLEMLMAG--ASAVQVATALMWD 278 (289)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--ccHheEcHHHHhc
Confidence 67999999996 78888888888 7899999998764
No 120
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=57.97 E-value=99 Score=24.97 Aligned_cols=69 Identities=17% Similarity=0.210 Sum_probs=37.5
Q ss_pred HHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCH---HHHHH-HHhcCCcee
Q 026886 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE---ETLDA-LNKQGHEVD 82 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde---~~I~~-L~~~ga~id 82 (231)
|+-.++..|++.|.+.....+=.=|...+.+.++++++. .+ -|+.|||.-. +...+ +.+.| .+-
T Consensus 28 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~----------~D-liIttGG~g~g~~D~t~~ai~~~g-~~~ 95 (144)
T TIGR00177 28 NGPLLAALLEEAGFNVSRLGIVPDDPEEIREILRKAVDE----------AD-VVLTTGGTGVGPRDVTPEALEELG-EKE 95 (144)
T ss_pred cHHHHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHHHhC----------CC-EEEECCCCCCCCCccHHHHHHHhC-cEE
Confidence 444556667777877766666666655555555554432 23 5666675433 22222 22233 466
Q ss_pred EEeec
Q 026886 83 AFGIG 87 (231)
Q Consensus 83 ~fGVG 87 (231)
.+|+|
T Consensus 96 ~~gv~ 100 (144)
T TIGR00177 96 IPGFG 100 (144)
T ss_pred Eeeec
Confidence 67775
No 121
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=57.91 E-value=15 Score=34.14 Aligned_cols=76 Identities=18% Similarity=0.249 Sum_probs=50.9
Q ss_pred hHHHHHHHHHHHhcCCCccEE-------Ee--C---CC--ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHH
Q 026886 5 VPNFCAVALALNDLGYKAVGI-------RL--D---SG--DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEE 69 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GV-------Rl--D---SG--Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~ 69 (231)
...++.++++|++.|..+.-| |. + ++ ....+++++|+. .++.|+++|++ +.+
T Consensus 223 ~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~ik~~-------------v~iPVi~~G~i~~~~ 289 (353)
T cd02930 223 WEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKLKRA-------------VDIPVIASNRINTPE 289 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHHHHh-------------CCCCEEEcCCCCCHH
Confidence 467899999999988554433 11 1 11 112223333322 34689999998 788
Q ss_pred HHHHHHhcCCceeEEeecCcccccC
Q 026886 70 TLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 70 ~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
.+.++.+.|. +|..++|..+..+.
T Consensus 290 ~a~~~i~~g~-~D~V~~gR~~l~dP 313 (353)
T cd02930 290 VAERLLADGD-ADMVSMARPFLADP 313 (353)
T ss_pred HHHHHHHCCC-CChhHhhHHHHHCc
Confidence 8999988765 79999999998854
No 122
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=57.22 E-value=46 Score=30.37 Aligned_cols=69 Identities=17% Similarity=0.160 Sum_probs=51.3
Q ss_pred HHHHHHHHhcCCCcc-EEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeec
Q 026886 9 CAVALALNDLGYKAV-GIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 9 i~Va~~L~~~g~~~~-GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVG 87 (231)
+.+|+...+.|.++. =|=| |.. -..-++++..+ ..+.|.+.||+..+.++++.+.| ++..+||
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL--g~~--n~~~i~~i~~~----------~~~~v~vGGGIr~e~v~~~l~aG--a~rVvIG 104 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML--GPN--NDDAAKEALHA----------YPGGLQVGGGINDTNAQEWLDEG--ASHVIVT 104 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC--CCC--cHHHHHHHHHh----------CCCCEEEeCCcCHHHHHHHHHcC--CCEEEEC
Confidence 678888888886542 3334 554 23345555554 34689999999999999999999 6789999
Q ss_pred Cccccc
Q 026886 88 TYLVTC 93 (231)
Q Consensus 88 T~Lvt~ 93 (231)
|.+++.
T Consensus 105 S~av~~ 110 (253)
T TIGR02129 105 SWLFTK 110 (253)
T ss_pred cHHHhC
Confidence 999875
No 123
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=56.32 E-value=5.6 Score=30.45 Aligned_cols=36 Identities=47% Similarity=0.726 Sum_probs=27.4
Q ss_pred HHHHHHHhcCCCc----cEEEeCCCChHHHHHH--HHHHHHHH
Q 026886 10 AVALALNDLGYKA----VGIRLDSGDLAYLSCE--ARKFFRTI 46 (231)
Q Consensus 10 ~Va~~L~~~g~~~----~GVRlDSGDl~~ls~~--~R~~ld~~ 46 (231)
.|-.||++.||.+ .|- |=||||+|.... +|.++...
T Consensus 23 ~Vy~AL~EKGYnPinQivGY-llSGDPaYItsh~nAR~lIr~~ 64 (79)
T PF06135_consen 23 QVYAALEEKGYNPINQIVGY-LLSGDPAYITSHNNARNLIRKI 64 (79)
T ss_pred HHHHHHHHcCCChHHHHHhh-eecCCCccccCcccHHHHHHHH
Confidence 6788999999986 354 459999998765 77777654
No 124
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=55.31 E-value=33 Score=31.70 Aligned_cols=35 Identities=20% Similarity=0.161 Sum_probs=29.6
Q ss_pred CCeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccc
Q 026886 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 56 ~~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
.++.|+++||+ +.+.+.++...| .|...|||.+..
T Consensus 279 ~~ipIi~~GGI~t~~da~e~l~aG--Ad~V~vg~~~~~ 314 (327)
T cd04738 279 GKIPIIGVGGISSGEDAYEKIRAG--ASLVQLYTGLVY 314 (327)
T ss_pred CCCcEEEECCCCCHHHHHHHHHcC--CCHHhccHHHHh
Confidence 35789999999 888999998888 688899998754
No 125
>PRK05660 HemN family oxidoreductase; Provisional
Probab=55.18 E-value=73 Score=29.99 Aligned_cols=69 Identities=9% Similarity=0.219 Sum_probs=53.3
Q ss_pred CCccEEEeCCCChHHHH-HHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCceeEEeecC
Q 026886 20 YKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 20 ~~~~GVRlDSGDl~~ls-~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~id~fGVGT 88 (231)
..+.-|-+=-|.+..|+ ..+.++++.++..|++..-..+.|-+. +.++++.+..|.+.|...-++||=|
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS 127 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQS 127 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCc
Confidence 45678888889998884 458888888888887764456677766 7899999999999997666666644
No 126
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=54.35 E-value=39 Score=33.54 Aligned_cols=133 Identities=18% Similarity=0.197 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
+++..-+++|-+.|..+ |=+|+.+= .+..+.+.+.+.++ -++++.|++-|=.+.+..+.+.+.|+..-..|
T Consensus 247 ~~~~~r~~~l~~ag~d~--i~iD~~~g--~~~~~~~~i~~ik~-----~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~vg 317 (505)
T PLN02274 247 ESDKERLEHLVKAGVDV--VVLDSSQG--DSIYQLEMIKYIKK-----TYPELDVIGGNVVTMYQAQNLIQAGVDGLRVG 317 (505)
T ss_pred ccHHHHHHHHHHcCCCE--EEEeCCCC--CcHHHHHHHHHHHH-----hCCCCcEEEecCCCHHHHHHHHHcCcCEEEEC
Confidence 56677788898888654 56687541 12332333333333 34678999999999999999999996544335
Q ss_pred ec------CcccccCCCCcceeEEEEeEE---CCcceeeccCCCCcCCCCCc-ceeeeecCCCCCceeeEEecCCCC
Q 026886 86 IG------TYLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPCK-KRSYRLYGKEGYPLVDIMTGENEP 152 (231)
Q Consensus 86 VG------T~Lvt~~~~p~l~~VyKLve~---~g~P~~KlS~~~~K~t~PG~-K~v~R~~~~~g~~~~D~i~l~~e~ 152 (231)
+| |+.++....|.+..++.+.++ .+.|++== |-+..||. ...+. .++++.+++-+++..+|.
T Consensus 318 ~g~G~~~~t~~~~~~g~~~~~~i~~~~~~~~~~~vpVIad----GGI~~~~di~kAla-~GA~~V~vGs~~~~t~Es 389 (505)
T PLN02274 318 MGSGSICTTQEVCAVGRGQATAVYKVASIAAQHGVPVIAD----GGISNSGHIVKALT-LGASTVMMGSFLAGTTEA 389 (505)
T ss_pred CCCCccccCccccccCCCcccHHHHHHHHHHhcCCeEEEe----CCCCCHHHHHHHHH-cCCCEEEEchhhcccccC
Confidence 44 444443334444444443333 23455433 44555553 22222 355666677777777774
No 127
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=53.97 E-value=19 Score=30.32 Aligned_cols=72 Identities=19% Similarity=0.258 Sum_probs=44.2
Q ss_pred HHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhc--CCceeEEeecCcccccCC-------CCcceeEEEEeEE
Q 026886 38 EARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQ--GHEVDAFGIGTYLVTCYA-------QAALGCVFKLVEI 108 (231)
Q Consensus 38 ~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~--ga~id~fGVGT~Lvt~~~-------~p~l~~VyKLve~ 108 (231)
|+|+.|+++-+. .++.-.++-|.+|||+|=-.|..+... +.++..|-+|..-....+ ...+|.-...+++
T Consensus 1 ~~r~~l~~av~~-rl~~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~~~e~~~a~~va~~~~~~~~~~~~ 79 (255)
T PF00733_consen 1 ELRELLEEAVAR-RLRSDKPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDDYDEREYARKVARHLGLEHHEIEL 79 (255)
T ss_dssp HHHHHHHHHHHH-HCGCTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC--HHHHHHHHHHHHT-EEEEEEE
T ss_pred CHHHHHHHHHHH-HHhcCCCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCcchhHHHHHHHhcccccccceeee
Confidence 355666655332 122447788999999999999999876 567899998877655211 2345665555555
Q ss_pred CC
Q 026886 109 NK 110 (231)
Q Consensus 109 ~g 110 (231)
+.
T Consensus 80 ~~ 81 (255)
T PF00733_consen 80 DP 81 (255)
T ss_dssp -H
T ss_pred ch
Confidence 53
No 128
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=53.56 E-value=29 Score=30.63 Aligned_cols=48 Identities=23% Similarity=0.305 Sum_probs=33.4
Q ss_pred HHHHHHHHHHhhCCCCCCCeEEEEeCCCC-----------HHHHHHHHhcCCceeEEeecCcccc
Q 026886 39 ARKFFRTIEKEFGVPDFEKMSITASNDLN-----------EETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 39 ~R~~ld~~~~~l~i~g~~~v~Iv~S~~Ld-----------e~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
++..++.|++ -.++++++.. +.+ .+-+++|.++|++||++|+=.|+..
T Consensus 105 i~~af~~ar~-----~~P~a~l~~N-dy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~ 163 (254)
T smart00633 105 IEKAFRYARE-----ADPDAKLFYN-DYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSL 163 (254)
T ss_pred HHHHHHHHHH-----hCCCCEEEEe-ccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecC
Confidence 5556666544 2257788774 444 4567788889999999999777754
No 129
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=53.51 E-value=15 Score=29.14 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=26.4
Q ss_pred CCeEEEEeCCCCH-HHHHHHHhcCCceeEEeecC
Q 026886 56 EKMSITASNDLNE-ETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 56 ~~v~Iv~S~~Lde-~~I~~L~~~ga~id~fGVGT 88 (231)
.++.|+++||++. +.+.++.+.| .|+++||+
T Consensus 169 ~~~pi~~~GGi~~~~~~~~~~~~G--ad~v~vgs 200 (200)
T cd04722 169 SKVPVIAGGGINDPEDAAEALALG--ADGVIVGS 200 (200)
T ss_pred CCCCEEEECCCCCHHHHHHHHHhC--CCEEEecC
Confidence 4568999999988 9999999887 78888885
No 130
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=53.46 E-value=29 Score=29.71 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=28.1
Q ss_pred CCCCCeEEEEeCC------CCH-HHHHHHHhcCCceeEEeecCc
Q 026886 53 PDFEKMSITASND------LNE-ETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 53 ~g~~~v~Iv~S~~------Lde-~~I~~L~~~ga~id~fGVGT~ 89 (231)
++.+++-|++++| -|. ...++|.+.|..|-+.|||+.
T Consensus 129 ~~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~~ 172 (193)
T cd01477 129 ENYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQD 172 (193)
T ss_pred CCCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCCC
Confidence 4567888998864 233 446678889999999999985
No 131
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=53.24 E-value=68 Score=30.19 Aligned_cols=70 Identities=11% Similarity=0.218 Sum_probs=56.4
Q ss_pred CCccEEEeCCCChHHHH-HHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCceeEEeecCc
Q 026886 20 YKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 20 ~~~~GVRlDSGDl~~ls-~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~id~fGVGT~ 89 (231)
.++.-|-+=-|++..|+ .+++++++.++..|++....++.|-+. +.++.+.++.|.+.|...-++||=|.
T Consensus 54 ~~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~ 125 (380)
T PRK09057 54 RTLTSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQAL 125 (380)
T ss_pred CCcCeEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccC
Confidence 56778888889998885 568899999988888776556666665 78999999999999987778887654
No 132
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=52.96 E-value=70 Score=30.58 Aligned_cols=80 Identities=11% Similarity=0.113 Sum_probs=60.5
Q ss_pred hHHHHHHHHHHHhcCCCc-cEEEeC----CCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC
Q 026886 5 VPNFCAVALALNDLGYKA-VGIRLD----SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~-~GVRlD----SGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga 79 (231)
-..++++|+.+++.|.++ .|-..+ ..+..-+..+-.++|.++++++|++- +|.=.|++.+..+.+.
T Consensus 114 ~eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~~-------~tev~d~~~v~~~~~~-- 184 (352)
T PRK13396 114 EEMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLGI-------ITEVMDAADLEKIAEV-- 184 (352)
T ss_pred HHHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCcE-------EEeeCCHHHHHHHHhh--
Confidence 356889999999988664 222222 12334467788999999999999874 4557999999999887
Q ss_pred ceeEEeecCcccccC
Q 026886 80 EVDAFGIGTYLVTCY 94 (231)
Q Consensus 80 ~id~fGVGT~Lvt~~ 94 (231)
+|.+=||+...+..
T Consensus 185 -~d~lqIga~~~~n~ 198 (352)
T PRK13396 185 -ADVIQVGARNMQNF 198 (352)
T ss_pred -CCeEEECcccccCH
Confidence 79999999998863
No 133
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=52.82 E-value=26 Score=28.59 Aligned_cols=39 Identities=21% Similarity=0.163 Sum_probs=29.8
Q ss_pred CCCCeEEEEeCCCCHH-------------H---HHHHHhcCCceeEEeecCcccc
Q 026886 54 DFEKMSITASNDLNEE-------------T---LDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde~-------------~---I~~L~~~ga~id~fGVGT~Lvt 92 (231)
.-.++-|++|+|.+.. . ++++.+.|..+-+.|||+...+
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~~ 156 (174)
T cd01454 102 EKRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDATT 156 (174)
T ss_pred CcCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCcccc
Confidence 3467889999998742 2 5667778888999999988753
No 134
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=52.46 E-value=26 Score=33.27 Aligned_cols=37 Identities=14% Similarity=0.189 Sum_probs=27.9
Q ss_pred CeEEEEeCCC-------------------CHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 57 KMSITASNDL-------------------NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~Iv~S~~L-------------------de~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
++.|+++|++ +.+.+.++.++|. .|..++|..++.+.
T Consensus 280 ~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~-~D~V~~gR~~iadP 335 (361)
T cd04747 280 GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGE-FDLVAVGRALLSDP 335 (361)
T ss_pred CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCC-CCeehhhHHHHhCc
Confidence 3578888887 6777888877664 68888888887753
No 135
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=52.19 E-value=89 Score=26.33 Aligned_cols=64 Identities=28% Similarity=0.282 Sum_probs=46.8
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~ 80 (231)
..+++.++++|.+.|.++.=||..+++-.. ..+.+.+ .++++.|-+-.=++.+.+....+.|+.
T Consensus 15 ~~~~~~~~~~l~~~G~~~vev~~~~~~~~~----~i~~l~~--------~~~~~~iGag~v~~~~~~~~a~~~Ga~ 78 (190)
T cd00452 15 AEDALALAEALIEGGIRAIEITLRTPGALE----AIRALRK--------EFPEALIGAGTVLTPEQADAAIAAGAQ 78 (190)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCChhHHH----HHHHHHH--------HCCCCEEEEEeCCCHHHHHHHHHcCCC
Confidence 357889999999999999888888887322 2333333 234677788788889999999888864
No 136
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=52.09 E-value=69 Score=26.13 Aligned_cols=37 Identities=8% Similarity=0.156 Sum_probs=25.2
Q ss_pred CCCCeEEEEeCCCCHHH-------HHHHHhcCCceeEEeecCcc
Q 026886 54 DFEKMSITASNDLNEET-------LDALNKQGHEVDAFGIGTYL 90 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde~~-------I~~L~~~ga~id~fGVGT~L 90 (231)
....+-|++|+|.+.+. ++++.+.+..+-+||||+..
T Consensus 106 ~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~~ 149 (176)
T cd01464 106 DWRPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPKA 149 (176)
T ss_pred CcCcEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEecccc
Confidence 34567899999987332 33344445789999999853
No 137
>PLN02411 12-oxophytodienoate reductase
Probab=51.33 E-value=48 Score=31.70 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=38.3
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccCCCCcceeEEEEeEECCcceee
Q 026886 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIK 115 (231)
Q Consensus 58 v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~VyKLve~~g~P~~K 115 (231)
+.++++|+++.+...++.++|. .|..++|-.++.+. +++-|+. +|+|.-+
T Consensus 314 ~pvi~~G~i~~~~a~~~l~~g~-aDlV~~gR~~iadP-----dl~~k~~--~g~~l~~ 363 (391)
T PLN02411 314 GTFMCSGGFTRELGMQAVQQGD-ADLVSYGRLFISNP-----DLVLRFK--LNAPLNK 363 (391)
T ss_pred CCEEEECCCCHHHHHHHHHcCC-CCEEEECHHHHhCc-----cHHHHHh--cCCCCCC
Confidence 3799999999999999988875 79999999998864 5555543 3565443
No 138
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=51.22 E-value=76 Score=28.84 Aligned_cols=35 Identities=11% Similarity=0.143 Sum_probs=26.1
Q ss_pred CCeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccc
Q 026886 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 56 ~~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
.++.|+++||+ +.+.+.++...| .|+..|||.+..
T Consensus 251 ~~ipIig~GGI~~~~da~~~l~aG--A~~V~i~ta~~~ 286 (299)
T cd02940 251 PGLPISGIGGIESWEDAAEFLLLG--ASVVQVCTAVMN 286 (299)
T ss_pred CCCcEEEECCCCCHHHHHHHHHcC--CChheEceeecc
Confidence 36799999998 456677776788 467788887754
No 139
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=50.92 E-value=92 Score=28.59 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=41.8
Q ss_pred HHHHHHHhcCCCccEEEeCCCChHHHH--------HHHHHHHHHHHHhhCCCCCCCeEE--EEeCCCCHHHHHHHHhc
Q 026886 10 AVALALNDLGYKAVGIRLDSGDLAYLS--------CEARKFFRTIEKEFGVPDFEKMSI--TASNDLNEETLDALNKQ 77 (231)
Q Consensus 10 ~Va~~L~~~g~~~~GVRlDSGDl~~ls--------~~~R~~ld~~~~~l~i~g~~~v~I--v~S~~Lde~~I~~L~~~ 77 (231)
..+++|.+.|.....|-+||.|...+. .++.+.++.+.+ . |+..++| ++..+.|.+.+.++.+.
T Consensus 105 ~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~~-~---Gi~~v~in~v~~~g~N~~ei~~~~~~ 178 (329)
T PRK13361 105 RFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAKA-A---GFERIKLNAVILRGQNDDEVLDLVEF 178 (329)
T ss_pred HHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHHH-c---CCCceEEEEEEECCCCHHHHHHHHHH
Confidence 467788889999899999999875432 234444444322 3 4434444 56677888888877663
No 140
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=50.48 E-value=1.2e+02 Score=26.78 Aligned_cols=71 Identities=15% Similarity=0.132 Sum_probs=41.0
Q ss_pred HHHHHHHHHHHhcCCCccEEEeCCC-C--h---HHHHHHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcC
Q 026886 6 PNFCAVALALNDLGYKAVGIRLDSG-D--L---AYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQG 78 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~GVRlDSG-D--l---~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~g 78 (231)
...++.++++.+.|.+-.- =.+|| + . ..+.++++++.++ ++ +++.+| |.++++.++.|.+.|
T Consensus 65 eei~~~~~~~~~~g~~~~~-l~~~g~~~~~~~~~~~~~~i~~~~~~----~~------i~~~~~~g~~~~e~l~~Lk~aG 133 (296)
T TIGR00433 65 DEVLEEARKAKAAGATRFC-LVASGRGPKDREFMEYVEAMVQIVEE----MG------LKTCATLGLLDPEQAKRLKDAG 133 (296)
T ss_pred HHHHHHHHHHHHCCCCEEE-EEEecCCCChHHHHHHHHHHHHHHHh----CC------CeEEecCCCCCHHHHHHHHHcC
Confidence 3456666666666654211 23444 2 2 2244444444433 22 344555 678999999999999
Q ss_pred CceeEEeecCc
Q 026886 79 HEVDAFGIGTY 89 (231)
Q Consensus 79 a~id~fGVGT~ 89 (231)
++.+.+|-.
T Consensus 134 --~~~v~i~~E 142 (296)
T TIGR00433 134 --LDYYNHNLD 142 (296)
T ss_pred --CCEEEEccc
Confidence 577777744
No 141
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=50.46 E-value=98 Score=29.56 Aligned_cols=48 Identities=27% Similarity=0.379 Sum_probs=36.5
Q ss_pred HHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccc
Q 026886 37 CEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 37 ~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
.++++.+.+. ++. .++.|++||++ +...+......| .|..++||.+..
T Consensus 271 ~~v~~~~~~~----~~~--~~i~viasGGI~~g~Dv~kalaLG--Ad~V~ig~~~l~ 319 (392)
T cd02808 271 ARAHQALVKN----GLR--DRVSLIASGGLRTGADVAKALALG--ADAVGIGTAALI 319 (392)
T ss_pred HHHHHHHHHc----CCC--CCCeEEEECCCCCHHHHHHHHHcC--CCeeeechHHHH
Confidence 3455555553 222 46899999999 888899999999 579999999876
No 142
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=50.11 E-value=17 Score=32.07 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=29.0
Q ss_pred eEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccc
Q 026886 58 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 58 v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
..|++=+|+ +.+.++.+.+.| .|++=|||.++.
T Consensus 186 ~~i~v~gGI~~~e~i~~~~~~g--aD~vvvGSai~~ 219 (244)
T PRK13125 186 KYLVVGFGLDSPEDARDALSAG--ADGVVVGTAFIE 219 (244)
T ss_pred CCEEEeCCcCCHHHHHHHHHcC--CCEEEECHHHHH
Confidence 358889999 999999998888 689999999975
No 143
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=50.02 E-value=1.4e+02 Score=26.62 Aligned_cols=66 Identities=14% Similarity=0.025 Sum_probs=30.7
Q ss_pred HHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC
Q 026886 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga 79 (231)
..|+.++++|.+.|.+..=|-+.|.+-...-+++++.+.+ .++++.|=+=-=+|.+.++...+.|+
T Consensus 27 ~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~--------~~p~~~vGaGTVl~~e~a~~a~~aGA 92 (222)
T PRK07114 27 EVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAK--------ELPGMILGVGSIVDAATAALYIQLGA 92 (222)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHh--------hCCCeEEeeEeCcCHHHHHHHHHcCC
Confidence 4455556666666666666666655533322333332222 12333333333455555555555544
No 144
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=49.86 E-value=1.1e+02 Score=25.58 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=38.2
Q ss_pred HHHHhcCCCccEEEeCCC-ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEee
Q 026886 13 LALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 13 ~~L~~~g~~~~GVRlDSG-Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGV 86 (231)
.++++.|+++ +.+++. |.......++++... + -+.-|+.+...+...+..+.+.|.|+-.+|.
T Consensus 23 ~~~~~~g~~~--~~~~~~~~~~~~~~~i~~l~~~--------~-~dgii~~~~~~~~~~~~~~~~~~ipvv~~~~ 86 (259)
T cd01542 23 AALYENGYQM--LLMNTNFSIEKEIEALELLARQ--------K-VDGIILLATTITDEHREAIKKLNVPVVVVGQ 86 (259)
T ss_pred HHHHHCCCEE--EEEeCCCCHHHHHHHHHHHHhc--------C-CCEEEEeCCCCCHHHHHHHhcCCCCEEEEec
Confidence 4456778776 556665 555544445544332 2 3335666666667777888888877777653
No 145
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=49.41 E-value=83 Score=26.07 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=28.2
Q ss_pred CCCCCeEEEEeCCCC--------HHHHHHHHhcCCceeEEeecC
Q 026886 53 PDFEKMSITASNDLN--------EETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 53 ~g~~~v~Iv~S~~Ld--------e~~I~~L~~~ga~id~fGVGT 88 (231)
++..++-|++|+|-+ ++.+.++++.|..+-+.|||+
T Consensus 107 ~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~ 150 (186)
T cd01480 107 QKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS 150 (186)
T ss_pred CCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc
Confidence 467889999999964 234667888898888889887
No 146
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=49.38 E-value=1.2e+02 Score=26.79 Aligned_cols=71 Identities=23% Similarity=0.241 Sum_probs=50.3
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEE
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~f 84 (231)
...++.++++|.+.|.+..=|-++|.+-.... +.+.+ -++++.|=+=.=+|.+..+...+.|+. |
T Consensus 19 ~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~i----~~l~~--------~~~~~~vGAGTVl~~~~a~~a~~aGA~---F 83 (204)
T TIGR01182 19 VDDALPLAKALIEGGLRVLEVTLRTPVALDAI----RLLRK--------EVPDALIGAGTVLNPEQLRQAVDAGAQ---F 83 (204)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccHHHHH----HHHHH--------HCCCCEEEEEeCCCHHHHHHHHHcCCC---E
Confidence 46788999999999999999999998733333 33332 124567777778888888888888864 3
Q ss_pred eecCcc
Q 026886 85 GIGTYL 90 (231)
Q Consensus 85 GVGT~L 90 (231)
-|.-++
T Consensus 84 ivsP~~ 89 (204)
T TIGR01182 84 IVSPGL 89 (204)
T ss_pred EECCCC
Confidence 344444
No 147
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=49.36 E-value=38 Score=29.76 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=30.1
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccccc
Q 026886 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
++.|.+-||++++.+..+.+.| +|.+=+|+.+..+
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~aG--ad~iVvGsaI~~a 207 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAADAG--ANVIVAGSSIFKA 207 (228)
T ss_pred cCeEEECCCCCHHHHHHHHHcC--CCEEEEchHHhCC
Confidence 4789999999999999999999 4788888887653
No 148
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=48.05 E-value=92 Score=28.33 Aligned_cols=78 Identities=18% Similarity=0.327 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeC------CC-ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhc
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLD------SG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQ 77 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlD------SG-Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ 77 (231)
...+++.|+.|+++|.+ -+|.- |+ +..-+..+--+++.+++.++|++ ++|.-+|+..+..+.+.
T Consensus 40 ~~~~~~~A~~lk~~g~~--~~r~~~~kpRTs~~s~~G~g~~gl~~l~~~~~~~Gl~-------~~te~~d~~~~~~l~~~ 110 (266)
T PRK13398 40 EEQMVKVAEKLKELGVH--MLRGGAFKPRTSPYSFQGLGEEGLKILKEVGDKYNLP-------VVTEVMDTRDVEEVADY 110 (266)
T ss_pred HHHHHHHHHHHHHcCCC--EEEEeeecCCCCCCccCCcHHHHHHHHHHHHHHcCCC-------EEEeeCChhhHHHHHHh
Confidence 46789999999998866 56655 11 11111233344455555667766 45567999999999876
Q ss_pred CCceeEEeecCcccccC
Q 026886 78 GHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 78 ga~id~fGVGT~Lvt~~ 94 (231)
+|.+-||+..++++
T Consensus 111 ---vd~~kIga~~~~n~ 124 (266)
T PRK13398 111 ---ADMLQIGSRNMQNF 124 (266)
T ss_pred ---CCEEEECcccccCH
Confidence 78999999998864
No 149
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=47.86 E-value=72 Score=26.07 Aligned_cols=38 Identities=13% Similarity=0.356 Sum_probs=28.6
Q ss_pred CCCCCeEEEEeCCCCH------HHHHHHHhcCCceeEEeecCcc
Q 026886 53 PDFEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGTYL 90 (231)
Q Consensus 53 ~g~~~v~Iv~S~~Lde------~~I~~L~~~ga~id~fGVGT~L 90 (231)
++..++-|++|+|.+. +.+++|.+.|..+-.+|||+..
T Consensus 106 ~~~~~~villTDG~~~~~~~~~~~a~~l~~~gv~v~~igiG~~~ 149 (186)
T cd01471 106 ENAPQLVIIMTDGIPDSKFRTLKEARKLRERGVIIAVLGVGQGV 149 (186)
T ss_pred ccCceEEEEEccCCCCCCcchhHHHHHHHHCCCEEEEEEeehhh
Confidence 3456778999988752 3567788889889999999753
No 150
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=47.22 E-value=60 Score=32.07 Aligned_cols=69 Identities=23% Similarity=0.393 Sum_probs=44.9
Q ss_pred CCCccEEEeCCCChHHHH-HHHHHHHHHHHHhh-CCCCCCCeEEEEe--CCCCHHHHHHHHhcCCceeEEeec
Q 026886 19 GYKAVGIRLDSGDLAYLS-CEARKFFRTIEKEF-GVPDFEKMSITAS--NDLNEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 19 g~~~~GVRlDSGDl~~ls-~~~R~~ld~~~~~l-~i~g~~~v~Iv~S--~~Lde~~I~~L~~~ga~id~fGVG 87 (231)
|.++..|-+--|.+..++ .++.++++.+...| ++.+...+.+-+. +.+|++.++.|.+.|...-++|+=
T Consensus 216 ~~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQ 288 (488)
T PRK08207 216 GLKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQ 288 (488)
T ss_pred CCceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCC
Confidence 345556666677776664 34677777776656 5555555444332 379999999999998654455543
No 151
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=46.76 E-value=40 Score=33.50 Aligned_cols=135 Identities=16% Similarity=0.189 Sum_probs=83.4
Q ss_pred chHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeE
Q 026886 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (231)
Q Consensus 4 Gvpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~ 83 (231)
|...+...+.+|-+.|.+ -|=+||-.- .+..+.+.+.+.+.+|+ .++.|++-|=++.+..+.|.+.|+..--
T Consensus 239 ~~~~~~~ra~~Lv~aGvd--~i~vd~a~g--~~~~~~~~i~~ir~~~~----~~~~V~aGnV~t~e~a~~li~aGAd~I~ 310 (502)
T PRK07107 239 NTRDYAERVPALVEAGAD--VLCIDSSEG--YSEWQKRTLDWIREKYG----DSVKVGAGNVVDREGFRYLAEAGADFVK 310 (502)
T ss_pred ChhhHHHHHHHHHHhCCC--eEeecCccc--ccHHHHHHHHHHHHhCC----CCceEEeccccCHHHHHHHHHcCCCEEE
Confidence 455778889999888854 455776321 13333444444444332 3489999999999999999999987555
Q ss_pred EeecCc------ccccCCCCcceeEEEEeEEC-------C--cceeeccCCCCcCCCCCc--ceeeeecCCCCCceeeEE
Q 026886 84 FGIGTY------LVTCYAQAALGCVFKLVEIN-------K--QPRIKLSEDVSKVSIPCK--KRSYRLYGKEGYPLVDIM 146 (231)
Q Consensus 84 fGVGT~------Lvt~~~~p~l~~VyKLve~~-------g--~P~~KlS~~~~K~t~PG~--K~v~R~~~~~g~~~~D~i 146 (231)
.|+|.- .++..+.|.+..+|+..+.- | .|++ .| |=...+|. |.+. .+++..+++.++
T Consensus 311 vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~a~~~~~~~~g~~~~vi--ad--gGir~~gdi~KAla--~GA~~vm~G~~~ 384 (502)
T PRK07107 311 VGIGGGSICITREQKGIGRGQATALIEVAKARDEYFEETGVYIPIC--SD--GGIVYDYHMTLALA--MGADFIMLGRYF 384 (502)
T ss_pred ECCCCCcCcccccccCCCccHHHHHHHHHHHHHHHHhhcCCcceEE--Ec--CCCCchhHHHHHHH--cCCCeeeeChhh
Confidence 566643 45555677888888776531 3 3443 22 22223343 3332 345555666677
Q ss_pred ecCCCC
Q 026886 147 TGENEP 152 (231)
Q Consensus 147 ~l~~e~ 152 (231)
+-.+|.
T Consensus 385 ag~~es 390 (502)
T PRK07107 385 ARFDES 390 (502)
T ss_pred hccccC
Confidence 666664
No 152
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=46.70 E-value=86 Score=32.66 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=50.4
Q ss_pred HhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccc
Q 026886 16 NDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 16 ~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
.+.|....+|=-=.++-..+...+.+.|+++ |.++++|++-|.+=++....|.+.|. -..|..||++..
T Consensus 630 ~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~-------G~~~v~vl~GG~~~~~~~~~l~~aGv-D~~i~~g~d~~~ 698 (714)
T PRK09426 630 VENDVHVVGVSSLAAGHKTLVPALIEALKKL-------GREDIMVVVGGVIPPQDYDFLYEAGV-AAIFGPGTVIAD 698 (714)
T ss_pred HHcCCCEEEEeccchhhHHHHHHHHHHHHhc-------CCCCcEEEEeCCCChhhHHHHHhCCC-CEEECCCCCHHH
Confidence 3446667776433345566788899999998 87888899888856666688888885 357889988754
No 153
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=45.75 E-value=69 Score=30.56 Aligned_cols=78 Identities=17% Similarity=0.238 Sum_probs=50.1
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCCC-----------hHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeC-CCCHHHHH
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSGD-----------LAYLSCEARKFFRTIEKEFGVPDFEKMSITASN-DLNEETLD 72 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSGD-----------l~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~-~Lde~~I~ 72 (231)
+..++.++++|.+.|. +.-|-+-+|+ ..++...++.+-.++ .+.++++| --|.+...
T Consensus 236 ~~e~~~la~~L~~~G~-~d~i~vs~~~~~~~~~~~~~~~~~~~~~a~~i~~~~----------~~pvi~~G~i~~~~~Ae 304 (363)
T COG1902 236 IEEAVELAKALEEAGL-VDYIHVSEGGYERGGTITVSGPGYQVEFAARIKKAV----------RIPVIAVGGINDPEQAE 304 (363)
T ss_pred HHHHHHHHHHHHhcCC-ccEEEeecccccCCCCccccccchhHHHHHHHHHhc----------CCCEEEeCCCCCHHHHH
Confidence 3467888888887773 2223333322 223333333333332 25778887 47889999
Q ss_pred HHHhcCCceeEEeecCcccccC
Q 026886 73 ALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 73 ~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
++.+.| ..|..|+|.-+..+.
T Consensus 305 ~~l~~g-~aDlVa~gR~~ladP 325 (363)
T COG1902 305 EILASG-RADLVAMGRPFLADP 325 (363)
T ss_pred HHHHcC-CCCEEEechhhhcCc
Confidence 999998 789999999998854
No 154
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=44.62 E-value=1.3e+02 Score=25.09 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=38.7
Q ss_pred HHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 13 ~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
.++++.|+++. + .++.+.....+.+.+++.. +--+.-|+.+...+...+..+.+.|.|+-.++
T Consensus 28 ~~~~~~g~~~~-~-~~~~~~~~~~~~~~~~~~~--------~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~~ 90 (270)
T cd06294 28 AVANENGYDIS-L-ATGKNEEELLEEVKKMIQQ--------KRVDGFILLYSREDDPIIDYLKEEKFPFVVIG 90 (270)
T ss_pred HHHHHCCCEEE-E-ecCCCcHHHHHHHHHHHHH--------cCcCEEEEecCcCCcHHHHHHHhcCCCEEEEC
Confidence 34566677654 2 3555555555666666654 22344566665666677888888887766664
No 155
>PRK05473 hypothetical protein; Provisional
Probab=44.37 E-value=9.1 Score=29.72 Aligned_cols=36 Identities=44% Similarity=0.665 Sum_probs=27.0
Q ss_pred HHHHHHHhcCCCc----cEEEeCCCChHHHHHH--HHHHHHHH
Q 026886 10 AVALALNDLGYKA----VGIRLDSGDLAYLSCE--ARKFFRTI 46 (231)
Q Consensus 10 ~Va~~L~~~g~~~----~GVRlDSGDl~~ls~~--~R~~ld~~ 46 (231)
.|-.||.+.||.+ .|- |=||||+|.... +|.++...
T Consensus 26 ~Vy~AL~EKGYNPinQiVGY-llSGDPaYItsh~nAR~lIrki 67 (86)
T PRK05473 26 TVYDALEEKGYNPINQIVGY-LLSGDPAYIPRHNDARNLIRKL 67 (86)
T ss_pred HHHHHHHHcCCChHHHHHhh-hccCCCCccCCcccHHHHHHHH
Confidence 5778899999986 354 459999998765 77776664
No 156
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=44.05 E-value=23 Score=31.81 Aligned_cols=33 Identities=15% Similarity=0.267 Sum_probs=29.1
Q ss_pred eEEEEeCCCC-HHHHHHHHhcCCceeEEeecCcccc
Q 026886 58 MSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 58 v~Iv~S~~Ld-e~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
..|++-+|++ .+.+..+.+.| .|++-|||.++.
T Consensus 199 ~pi~vgfGI~~~e~~~~~~~~G--ADgvVvGSaiv~ 232 (256)
T TIGR00262 199 KPVLVGFGISKPEQVKQAIDAG--ADGVIVGSAIVK 232 (256)
T ss_pred CCEEEeCCCCCHHHHHHHHHcC--CCEEEECHHHHH
Confidence 3699999997 99999999998 589999999976
No 157
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=43.85 E-value=1.2e+02 Score=28.09 Aligned_cols=78 Identities=22% Similarity=0.295 Sum_probs=47.6
Q ss_pred HHHHHHHHHhc--CCCccEEEeCCCChHHHHHH-HHHHHHHHHHhhCCCCCCCeEEEE-eCCCCHHHHHHHHhcCCceeE
Q 026886 8 FCAVALALNDL--GYKAVGIRLDSGDLAYLSCE-ARKFFRTIEKEFGVPDFEKMSITA-SNDLNEETLDALNKQGHEVDA 83 (231)
Q Consensus 8 ai~Va~~L~~~--g~~~~GVRlDSGDl~~ls~~-~R~~ld~~~~~l~i~g~~~v~Iv~-S~~Lde~~I~~L~~~ga~id~ 83 (231)
.-++.+|++.. +..+.-|-+-.|.+..+... +..+++.. ..+++.+--.+.+-+ .+.++++.++.|.+.|...-+
T Consensus 36 ~~~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i-~~~~~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvs 114 (374)
T PRK05799 36 IKALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETI-KKLNKKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLS 114 (374)
T ss_pred HHHHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHH-HhCCCCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEE
Confidence 34456666532 23456788888887765544 33344443 335554333444433 257999999999999976666
Q ss_pred Eee
Q 026886 84 FGI 86 (231)
Q Consensus 84 fGV 86 (231)
+||
T Consensus 115 iGv 117 (374)
T PRK05799 115 IGL 117 (374)
T ss_pred EEC
Confidence 666
No 158
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=43.12 E-value=1.2e+02 Score=28.28 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=31.7
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCceeEEeecCcccccCCCC
Q 026886 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQA 97 (231)
Q Consensus 57 ~v~Iv~S~~Ld-e~~I~~L~~~ga~id~fGVGT~Lvt~~~~p 97 (231)
++.|+++||+. ...|.+..+.| .|+..+||.|+.+...|
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~G--A~~VmiGt~fa~t~Es~ 236 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAG--ADAVMLGSLLAGTDESP 236 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcC--CCEEEecchhcccccCC
Confidence 46799999996 57788877888 46889999999887655
No 159
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=43.08 E-value=57 Score=31.29 Aligned_cols=66 Identities=23% Similarity=0.363 Sum_probs=42.8
Q ss_pred EEEeCCCChHHH-HHHHHHHHHHHHHhhCCCC-CCCeEEEEe-CCCCHHHHHHHHhcCCceeEEeecCc
Q 026886 24 GIRLDSGDLAYL-SCEARKFFRTIEKEFGVPD-FEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 24 GVRlDSGDl~~l-s~~~R~~ld~~~~~l~i~g-~~~v~Iv~S-~~Lde~~I~~L~~~ga~id~fGVGT~ 89 (231)
-|=+--|.+..+ ..++.++++.++..+++.+ -..+.|-+. +.++++.+..|.+.|...-++||=|.
T Consensus 94 ~i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~ 162 (430)
T PRK08208 94 SFAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSF 162 (430)
T ss_pred EEEEcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccC
Confidence 333434665555 3446677777766677653 224444443 57999999999999977667777654
No 160
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=43.02 E-value=55 Score=26.23 Aligned_cols=37 Identities=19% Similarity=0.267 Sum_probs=26.7
Q ss_pred CCCCCeEEEEeCCCCHHH----HHHHHhcCCceeEEeecCc
Q 026886 53 PDFEKMSITASNDLNEET----LDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 53 ~g~~~v~Iv~S~~Lde~~----I~~L~~~ga~id~fGVGT~ 89 (231)
++..++-|++|+|-+.+. ...+.+.|..+-++|+|+.
T Consensus 101 ~~~~~~iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~~ 141 (164)
T cd01472 101 EGVPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKNA 141 (164)
T ss_pred CCCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCcC
Confidence 356788899999986543 3456677877778888874
No 161
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=43.01 E-value=1e+02 Score=27.54 Aligned_cols=71 Identities=20% Similarity=0.307 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCCccEEEeC-CCCh--HHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCCcee
Q 026886 7 NFCAVALALNDLGYKAVGIRLD-SGDL--AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVD 82 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlD-SGDl--~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~~I~~L~~~ga~id 82 (231)
-+.+-|++.+.+|.++ |=+| ||.. ..+.+++++.+ .++.|++-||+ +.+.++++.+.| .|
T Consensus 136 ~~~ayA~aae~~g~~i--vyLe~SG~~~~~e~I~~v~~~~------------~~~pl~vGGGIrs~e~a~~l~~aG--AD 199 (219)
T cd02812 136 DAAAYALAAEYLGMPI--VYLEYSGAYGPPEVVRAVKKVL------------GDTPLIVGGGIRSGEQAKEMAEAG--AD 199 (219)
T ss_pred HHHHHHHHHHHcCCeE--EEeCCCCCcCCHHHHHHHHHhc------------CCCCEEEeCCCCCHHHHHHHHHcC--CC
Confidence 3455566666677444 4445 5543 22233333322 15689999999 889999999888 57
Q ss_pred EEeecCccccc
Q 026886 83 AFGIGTYLVTC 93 (231)
Q Consensus 83 ~fGVGT~Lvt~ 93 (231)
..-|||.+.++
T Consensus 200 ~VVVGsai~~~ 210 (219)
T cd02812 200 TIVVGNIVEED 210 (219)
T ss_pred EEEECchhhCC
Confidence 88999998874
No 162
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=42.93 E-value=73 Score=27.52 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=29.3
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCceeEEeecCccccc
Q 026886 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~Iv~S~~Ld-e~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
++.|+++||+. .+.+.++.+.| ++++-|||.+...
T Consensus 193 ~iPvia~GGI~~~~di~~~~~~G--a~gv~vgsa~~~~ 228 (241)
T PRK13585 193 DIPVIASGGVTTLDDLRALKEAG--AAGVVVGSALYKG 228 (241)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcC--CCEEEEEHHHhcC
Confidence 46899999999 88898988877 6788899998764
No 163
>PF15560 Imm8: Immunity protein 8
Probab=41.65 E-value=29 Score=28.89 Aligned_cols=63 Identities=22% Similarity=0.195 Sum_probs=42.4
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCCCeEE--EEeCCCCHH-------HHHHHHhcCCceeEEeecCccccc
Q 026886 31 DLAYLSCEARKFFRTIEKEFGVPDFEKMSI--TASNDLNEE-------TLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 31 Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~I--v~S~~Lde~-------~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
++..+++++|+.+.+-=.-+.+.|+.+++| .+|||+.++ ..+-+.+.+--+..|.+-.+=.|+
T Consensus 18 ~~~~~ir~mRk~lKk~F~~~~~e~l~k~kI~l~~sGdvS~Y~~~sGIyq~rY~~kkkefv~~fcid~~~W~s 89 (133)
T PF15560_consen 18 NLHSLIREMRKSLKKQFESIEFEGLDKIKINLYFSGDVSSYCDKSGIYQCRYFSKKKEFVVEFCIDRNYWTS 89 (133)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhhhEeEEEEEcCchhhhcCCCCcchhHHHHhhhheeEEEEeccccccC
Confidence 567889999999998766667778877665 679998775 344454444445555555544443
No 164
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=41.54 E-value=1.1e+02 Score=29.57 Aligned_cols=69 Identities=13% Similarity=0.253 Sum_probs=50.0
Q ss_pred CccEEEeCCCChHHHH-HHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCceeEEeecCc
Q 026886 21 KAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 21 ~~~GVRlDSGDl~~ls-~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~id~fGVGT~ 89 (231)
.+.-|=+--|.+..|+ .++.++++.++..|++..-..+.|=+. +.+|++++..|.+.|...-++||=|.
T Consensus 114 ~i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf 184 (449)
T PRK09058 114 PIHAVYFGGGTPTALSAEDLARLITALREYLPLAPDCEITLEGRINGFDDEKADAALDAGANRFSIGVQSF 184 (449)
T ss_pred eeeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcC
Confidence 3455666678887765 457888888877787754334444333 78999999999999988888888763
No 165
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=41.39 E-value=1.4e+02 Score=28.76 Aligned_cols=70 Identities=20% Similarity=0.380 Sum_probs=49.3
Q ss_pred CCccEEEeCCCChHHH-HHHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCceeEEeecCc
Q 026886 20 YKAVGIRLDSGDLAYL-SCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 20 ~~~~GVRlDSGDl~~l-s~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~id~fGVGT~ 89 (231)
..+..|-+--|.+..+ ..++.++++.+...|++..-..+.|-+. +.++++.+..|.+.|...-++||=|.
T Consensus 101 ~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~ 172 (453)
T PRK09249 101 RPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDF 172 (453)
T ss_pred CceEEEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCC
Confidence 4566777777877766 5667888888877776643345555544 36999999999999976666666543
No 166
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=41.36 E-value=1.1e+02 Score=24.03 Aligned_cols=32 Identities=16% Similarity=0.274 Sum_probs=22.3
Q ss_pred CeEEEEeCCCC------HHHHHH----HHhcCCceeEEeecC
Q 026886 57 KMSITASNDLN------EETLDA----LNKQGHEVDAFGIGT 88 (231)
Q Consensus 57 ~v~Iv~S~~Ld------e~~I~~----L~~~ga~id~fGVGT 88 (231)
+.-|++|+|.+ .+.+.+ +.+.+..|..+|+|.
T Consensus 98 ~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~ 139 (170)
T cd01465 98 NRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGD 139 (170)
T ss_pred eEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCC
Confidence 45789999985 343433 334688899999994
No 167
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=41.00 E-value=1.1e+02 Score=22.84 Aligned_cols=36 Identities=28% Similarity=0.420 Sum_probs=28.1
Q ss_pred CCCCCeEEEEeCCCCH-------HHHHHHHhcCCceeEEeecC
Q 026886 53 PDFEKMSITASNDLNE-------ETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 53 ~g~~~v~Iv~S~~Lde-------~~I~~L~~~ga~id~fGVGT 88 (231)
++..+.-|++|++.+. +.+..+.+.+..+..+|+|+
T Consensus 99 ~~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~g~ 141 (161)
T cd00198 99 PNARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIGD 141 (161)
T ss_pred CCCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEcCC
Confidence 3457778999988775 44666777788899999998
No 168
>PLN02389 biotin synthase
Probab=40.87 E-value=2e+02 Score=27.46 Aligned_cols=72 Identities=15% Similarity=0.196 Sum_probs=43.2
Q ss_pred hHHHHHHHHHHHhcCCCccE----EEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeC-CCCHHHHHHHHhcCC
Q 026886 5 VPNFCAVALALNDLGYKAVG----IRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASN-DLNEETLDALNKQGH 79 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~G----VRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~-~Lde~~I~~L~~~ga 79 (231)
....++.|+++.+.|.+-.. .|..+|.... -..+.++++.+++ . + +.|.+|+ -++++.+++|.+.|
T Consensus 118 ~EeIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~-~e~i~eiir~ik~-~---~---l~i~~s~G~l~~E~l~~LkeAG- 188 (379)
T PLN02389 118 KDDVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTN-FNQILEYVKEIRG-M---G---MEVCCTLGMLEKEQAAQLKEAG- 188 (379)
T ss_pred HHHHHHHHHHHHHcCCCEEEEEecccCCCCChhH-HHHHHHHHHHHhc-C---C---cEEEECCCCCCHHHHHHHHHcC-
Confidence 44567778888777765322 2333443222 2445555555532 2 2 3456665 58999999999998
Q ss_pred ceeEEee
Q 026886 80 EVDAFGI 86 (231)
Q Consensus 80 ~id~fGV 86 (231)
+|.|.+
T Consensus 189 -ld~~~~ 194 (379)
T PLN02389 189 -LTAYNH 194 (379)
T ss_pred -CCEEEe
Confidence 666655
No 169
>PTZ00413 lipoate synthase; Provisional
Probab=40.87 E-value=91 Score=30.48 Aligned_cols=67 Identities=15% Similarity=0.206 Sum_probs=43.9
Q ss_pred HHHHHHHHHhcCCCc---cEE-EeC--CCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEe-CCC--CHHHHHHHHhcC
Q 026886 8 FCAVALALNDLGYKA---VGI-RLD--SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDL--NEETLDALNKQG 78 (231)
Q Consensus 8 ai~Va~~L~~~g~~~---~GV-RlD--SGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~L--de~~I~~L~~~g 78 (231)
-.++|++..++|.+. ..+ |-| -|....+++-++++=+. .+.+.|-+| +++ |++.++.|.+.|
T Consensus 182 p~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~---------~p~~~IevligDf~g~~e~l~~L~eAG 252 (398)
T PTZ00413 182 PEKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKES---------NPELLLEALVGDFHGDLKSVEKLANSP 252 (398)
T ss_pred HHHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHcc---------CCCCeEEEcCCccccCHHHHHHHHhcC
Confidence 457888888888763 344 422 35544444444333322 257899999 888 999999999998
Q ss_pred CceeEEe
Q 026886 79 HEVDAFG 85 (231)
Q Consensus 79 a~id~fG 85 (231)
.|.|.
T Consensus 253 --~dvyn 257 (398)
T PTZ00413 253 --LSVYA 257 (398)
T ss_pred --CCEEe
Confidence 45553
No 170
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=40.84 E-value=2.5e+02 Score=26.54 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=50.8
Q ss_pred HHHHHHHHHHhcCCCccEEEeCC--CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEE
Q 026886 7 NFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~f 84 (231)
+.++...+|-+.|...+-|=+|+ |. |+.+.+++++.++++ +...|++-|=.+.+..+.|.+.|+..-..
T Consensus 94 e~~~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~~-----p~~~vi~GnV~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 94 CEYEFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTHL-----PDSFVIAGNVGTPEAVRELENAGADATKV 164 (321)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHhC-----CCCEEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 44566677777786567888898 77 666666666666544 44457777788999999999999754334
Q ss_pred eec
Q 026886 85 GIG 87 (231)
Q Consensus 85 GVG 87 (231)
|+|
T Consensus 165 ~~G 167 (321)
T TIGR01306 165 GIG 167 (321)
T ss_pred CCC
Confidence 443
No 171
>TIGR02495 NrdG2 anaerobic ribonucleoside-triphosphate reductase activating protein. This enzyme is a member of the radical-SAM family (pfam04055). It is often gene clustered with the class III (anaerobic) ribonucleotide triphosphate reductase (NrdD, TIGR02487) and presumably fulfills the identical function as NrdG which utilizes S-adenosyl methionine, an iron-sulfur cluster and a reductant (dihydroflavodoxin) to produce a glycine-centered radical in NrdD.
Probab=40.68 E-value=1.2e+02 Score=25.00 Aligned_cols=62 Identities=18% Similarity=0.265 Sum_probs=38.9
Q ss_pred HHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcC
Q 026886 10 AVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG 78 (231)
Q Consensus 10 ~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~g 78 (231)
.+...+.+......+|.+-.|++.... .+.++++.+++ . |+ . ..+.||+.+++.+.++.+.|
T Consensus 51 ~i~~~i~~~~~~~~~i~~sGGEPll~~-~l~~li~~~~~-~---g~-~-v~i~TNg~~~~~l~~l~~~g 112 (191)
T TIGR02495 51 FLLEFLRSRQGLIDGVVITGGEPTLQA-GLPDFLRKVRE-L---GF-E-VKLDTNGSNPRVLEELLEEG 112 (191)
T ss_pred HHHHHHHHhcCCCCeEEEECCcccCcH-hHHHHHHHHHH-C---CC-e-EEEEeCCCCHHHHHHHHhcC
Confidence 344444444333678999888875433 25566665543 2 43 3 56678999998888888765
No 172
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=40.68 E-value=1e+02 Score=29.38 Aligned_cols=70 Identities=10% Similarity=0.170 Sum_probs=53.4
Q ss_pred CCccEEEeCCCChHHHHHH-HHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCceeEEeecCc
Q 026886 20 YKAVGIRLDSGDLAYLSCE-ARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 20 ~~~~GVRlDSGDl~~ls~~-~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~id~fGVGT~ 89 (231)
.++.-|-+=-|.+..|+.+ +.++++.+...++++....+.|-+. +.++++.++.|.+.|...-++||=|.
T Consensus 61 ~~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~ 132 (390)
T PRK06582 61 KYIKSIFFGGGTPSLMNPVIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSL 132 (390)
T ss_pred CceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcC
Confidence 3456667777888777655 6667888887788877777777776 57999999999999977777777554
No 173
>PRK13685 hypothetical protein; Provisional
Probab=40.50 E-value=94 Score=28.54 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=26.5
Q ss_pred CCeEEEEeCCCCH------------HHHHHHHhcCCceeEEeecCc
Q 026886 56 EKMSITASNDLNE------------ETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 56 ~~v~Iv~S~~Lde------------~~I~~L~~~ga~id~fGVGT~ 89 (231)
.+.-|++|||.|. +.+..+.+.|.+|..+|+||.
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTP 239 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCC
Confidence 4568999999874 245666778999999999974
No 174
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=40.17 E-value=84 Score=32.49 Aligned_cols=37 Identities=8% Similarity=0.165 Sum_probs=29.3
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
++.++++|++ +.+.+.++.++|. .|..++|..+..+.
T Consensus 687 ~~pv~~~G~i~~~~~a~~~l~~g~-~D~v~~gR~~l~dP 724 (765)
T PRK08255 687 GIATIAVGAISEADHVNSIIAAGR-ADLCALARPHLADP 724 (765)
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCC-cceeeEcHHHHhCc
Confidence 3578889998 6777888888764 78999998888754
No 175
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=39.94 E-value=2.1e+02 Score=26.60 Aligned_cols=68 Identities=22% Similarity=0.400 Sum_probs=47.8
Q ss_pred CccEEEeCCCChHHH-HHHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCceeEEeecC
Q 026886 21 KAVGIRLDSGDLAYL-SCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 21 ~~~GVRlDSGDl~~l-s~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~id~fGVGT 88 (231)
.+.-|-+=-|.+..+ ..++.++++.+.+.+++.+..++.|-++ +.+|++.+..|.+.|...-++||=|
T Consensus 51 ~i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS 120 (377)
T PRK08599 51 KLKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQT 120 (377)
T ss_pred ceeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEeccc
Confidence 344566655666544 3557888888877788776556666666 6799999999999996555566544
No 176
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=39.83 E-value=1.5e+02 Score=28.38 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=49.1
Q ss_pred HHHHHHHHHHHhcCCCccEEEeCCCCh--HH-HHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcee
Q 026886 6 PNFCAVALALNDLGYKAVGIRLDSGDL--AY-LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVD 82 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~GVRlDSGDl--~~-ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id 82 (231)
=.|+++.++|++.|++. -|=.=|||. .. --+++.+.+|+.-++++-+ --|++|||-+-|.+.-+.+.-.+++
T Consensus 51 f~avkiydeL~~~Gedv-eVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~~----~~i~VsDGaeDE~vlPiIqSr~~V~ 125 (344)
T PF04123_consen 51 FGAVKIYDELKAEGEDV-EVAVVSGSPDVGVEADRKIAEQLDEVLSKFDPD----SAIVVSDGAEDERVLPIIQSRVPVD 125 (344)
T ss_pred HHHHHHHHHHHhcCCCe-EEEEEECCCCCchhhHHHHHHHHHHHHHhCCCC----EEEEEecChhhhhhhHhhhccCceE
Confidence 35789999999888754 233334433 12 2344777777776766644 3899999998888888877655554
Q ss_pred E
Q 026886 83 A 83 (231)
Q Consensus 83 ~ 83 (231)
+
T Consensus 126 s 126 (344)
T PF04123_consen 126 S 126 (344)
T ss_pred E
Confidence 3
No 177
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=39.44 E-value=1.1e+02 Score=28.97 Aligned_cols=37 Identities=11% Similarity=0.172 Sum_probs=30.2
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
++.++++|++ +.+.+.++.++|. .|..++|..+..+.
T Consensus 289 ~~pvi~~G~i~~~~~~~~~l~~g~-~D~V~~gR~~ladP 326 (370)
T cd02929 289 SKPVVGVGRFTSPDKMVEVVKSGI-LDLIGAARPSIADP 326 (370)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCC-CCeeeechHhhhCc
Confidence 4578999998 5788888888765 79999999998853
No 178
>PRK12928 lipoyl synthase; Provisional
Probab=39.24 E-value=1.5e+02 Score=27.18 Aligned_cols=75 Identities=15% Similarity=0.073 Sum_probs=43.1
Q ss_pred hHHHHHHHHHHHhcCCC---ccEEEeCC-CC--hHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC--CHHHHHHHHh
Q 026886 5 VPNFCAVALALNDLGYK---AVGIRLDS-GD--LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL--NEETLDALNK 76 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~---~~GVRlDS-GD--l~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L--de~~I~~L~~ 76 (231)
....+++|+++.+.|.+ +.|+..|. .| ..++..-++++-+. . +-..+.++..+-+ +.+.+..|.+
T Consensus 89 ~eei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~----~---p~~~I~~ltp~~~~~~~e~L~~l~~ 161 (290)
T PRK12928 89 PDEPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRAR----N---PGTGIEVLTPDFWGGQRERLATVLA 161 (290)
T ss_pred HHHHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhc----C---CCCEEEEeccccccCCHHHHHHHHH
Confidence 34567888899888876 35665432 33 22333333333221 1 2235555444333 5788999999
Q ss_pred cCCceeEEee
Q 026886 77 QGHEVDAFGI 86 (231)
Q Consensus 77 ~ga~id~fGV 86 (231)
.|..+-.+++
T Consensus 162 Ag~~i~~hnl 171 (290)
T PRK12928 162 AKPDVFNHNL 171 (290)
T ss_pred cCchhhcccC
Confidence 9877666654
No 179
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=39.24 E-value=1.8e+02 Score=24.28 Aligned_cols=63 Identities=25% Similarity=0.229 Sum_probs=37.4
Q ss_pred HHHHHHhcCCCccEEEeCCC-ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEE
Q 026886 11 VALALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 11 Va~~L~~~g~~~~GVRlDSG-Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~f 84 (231)
+.+++++.|+.+.= .|++ |.......++..... + -+.-|+++...+...+..+.+.+.|+-.+
T Consensus 21 i~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~l~~~--------~-vdgiii~~~~~~~~~~~~l~~~~iPvv~~ 84 (268)
T cd06273 21 FQETLAAHGYTLLV--ASSGYDLDREYAQARKLLER--------G-VDGLALIGLDHSPALLDLLARRGVPYVAT 84 (268)
T ss_pred HHHHHHHCCCEEEE--ecCCCCHHHHHHHHHHHHhc--------C-CCEEEEeCCCCCHHHHHHHHhCCCCEEEE
Confidence 45567777877542 4554 544444444444432 2 24466666666778888888888775444
No 180
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=38.79 E-value=1.5e+02 Score=23.87 Aligned_cols=36 Identities=22% Similarity=0.300 Sum_probs=26.3
Q ss_pred CCCCCeEEEEeCCCCH----HHHHHHHhcCCceeEEeecC
Q 026886 53 PDFEKMSITASNDLNE----ETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 53 ~g~~~v~Iv~S~~Lde----~~I~~L~~~ga~id~fGVGT 88 (231)
++..++-|++|+|-.. +.+..+.+.|..+-.+|+|.
T Consensus 101 ~~~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~ 140 (164)
T cd01482 101 PGVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKD 140 (164)
T ss_pred CCCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecCc
Confidence 3567889999988763 33456777888888888875
No 181
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=38.59 E-value=2.3e+02 Score=26.25 Aligned_cols=68 Identities=18% Similarity=0.209 Sum_probs=47.8
Q ss_pred CccEEEeCCCChHHHH-HHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCceeEEeecC
Q 026886 21 KAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 21 ~~~GVRlDSGDl~~ls-~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~id~fGVGT 88 (231)
++.-|-+=-|.+..++ ..+.++++...+.+++..-..+.|-+. +.+|++.++.|.+.|...-++||=|
T Consensus 51 ~v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS 120 (360)
T TIGR00539 51 PLESIFIGGGTPNTLSVEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQS 120 (360)
T ss_pred cccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEeccc
Confidence 3556777778887774 457777877766676654445555554 6699999999999997666666654
No 182
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=38.54 E-value=1.2e+02 Score=28.10 Aligned_cols=131 Identities=23% Similarity=0.297 Sum_probs=71.5
Q ss_pred HHHHHHHHHHHhcCCCccEEEeCC--CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeE
Q 026886 6 PNFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~ 83 (231)
+++...+.++-+.|. ..|=+|+ |+...+ .++.+.+.+. ++++.|++.+-.+.+....+.+.|+..-.
T Consensus 93 ~~~~~~~~~l~eagv--~~I~vd~~~G~~~~~-~~~i~~ik~~--------~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~ 161 (325)
T cd00381 93 EDDKERAEALVEAGV--DVIVIDSAHGHSVYV-IEMIKFIKKK--------YPNVDVIAGNVVTAEAARDLIDAGADGVK 161 (325)
T ss_pred hhHHHHHHHHHhcCC--CEEEEECCCCCcHHH-HHHHHHHHHH--------CCCceEEECCCCCHHHHHHHHhcCCCEEE
Confidence 455666777766664 4555665 554322 2223333332 24689999999999999999999976444
Q ss_pred Eeec------CcccccCCCCcceeEEEEeEEC---CcceeeccCCCCcCCCCCc-ceeeeecCCCCCceeeEEecCCCC
Q 026886 84 FGIG------TYLVTCYAQAALGCVFKLVEIN---KQPRIKLSEDVSKVSIPCK-KRSYRLYGKEGYPLVDIMTGENEP 152 (231)
Q Consensus 84 fGVG------T~Lvt~~~~p~l~~VyKLve~~---g~P~~KlS~~~~K~t~PG~-K~v~R~~~~~g~~~~D~i~l~~e~ 152 (231)
.|+| |+..+....|.+..++.+.+.- +.|++ .+ |-...|+. ...+. .+.++.+++-.+...+|.
T Consensus 162 vg~g~G~~~~t~~~~g~g~p~~~~i~~v~~~~~~~~vpVI--A~--GGI~~~~di~kAla-~GA~~VmiGt~fa~t~Es 235 (325)
T cd00381 162 VGIGPGSICTTRIVTGVGVPQATAVADVAAAARDYGVPVI--AD--GGIRTSGDIVKALA-AGADAVMLGSLLAGTDES 235 (325)
T ss_pred ECCCCCcCcccceeCCCCCCHHHHHHHHHHHHhhcCCcEE--ec--CCCCCHHHHHHHHH-cCCCEEEecchhcccccC
Confidence 4444 2222233445555555444321 45665 22 33443332 22222 455666666666666664
No 183
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=38.32 E-value=1.4e+02 Score=23.58 Aligned_cols=48 Identities=21% Similarity=0.250 Sum_probs=29.1
Q ss_pred HHHHHHHhhCCCCCCCeEEEEeCCCC---HHHHHHHHhc---CCceeEEeecCc
Q 026886 42 FFRTIEKEFGVPDFEKMSITASNDLN---EETLDALNKQ---GHEVDAFGIGTY 89 (231)
Q Consensus 42 ~ld~~~~~l~i~g~~~v~Iv~S~~Ld---e~~I~~L~~~---ga~id~fGVGT~ 89 (231)
.|+.+-+.+.-++....-|++|+|.. ++.+.+..+. ...+.+||+|..
T Consensus 83 aL~~a~~~~~~~~~~~~IilltDG~~~~~~~~i~~~v~~~~~~~~i~~~~~g~~ 136 (155)
T PF13768_consen 83 ALRAALALLQRPGCVRAIILLTDGQPVSGEEEILDLVRRARGHIRIFTFGIGSD 136 (155)
T ss_pred HHHHHHHhcccCCCccEEEEEEeccCCCCHHHHHHHHHhcCCCceEEEEEECCh
Confidence 34443332333456677899998883 4455555432 346899999984
No 184
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=38.28 E-value=1.2e+02 Score=28.05 Aligned_cols=35 Identities=23% Similarity=0.275 Sum_probs=26.4
Q ss_pred CeEEEEeCCC-CHHHHHHHHhc-CCceeEEeecCccccc
Q 026886 57 KMSITASNDL-NEETLDALNKQ-GHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~Iv~S~~L-de~~I~~L~~~-ga~id~fGVGT~Lvt~ 93 (231)
++.|+++||+ +.+.+.++.++ | +|+..||+-+...
T Consensus 194 ~iPVI~nGgI~s~~da~~~l~~~g--adgVmiGR~~l~n 230 (321)
T PRK10415 194 SIPVIANGDITDPLKARAVLDYTG--ADALMIGRAAQGR 230 (321)
T ss_pred CCcEEEeCCCCCHHHHHHHHhccC--CCEEEEChHhhcC
Confidence 4678888888 77788887764 4 6788888887653
No 185
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=37.99 E-value=91 Score=28.57 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC
Q 026886 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL 66 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L 66 (231)
.||--+|+.|.+.|+.+.=++.=-=|+..+...+|.+++. .+ -||+||||
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r----------~D-~vI~tGGL 70 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER----------AD-VVITTGGL 70 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC----------CC-EEEECCCc
Confidence 4788899999999999887777655788888888888765 33 78888886
No 186
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=37.91 E-value=1.7e+02 Score=25.16 Aligned_cols=66 Identities=12% Similarity=0.194 Sum_probs=41.2
Q ss_pred HHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCH-------HHHHHHHhcCCceeEE
Q 026886 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE-------ETLDALNKQGHEVDAF 84 (231)
Q Consensus 12 a~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde-------~~I~~L~~~ga~id~f 84 (231)
++...+.|-.+.++.. ++|+..+ +++.+.. .+.+++|||+.. +.+.++.+.|+ +++
T Consensus 149 ~~~a~~~GaD~Ik~~~-~~~~~~~----~~i~~~~----------~~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga--~gv 211 (235)
T cd00958 149 ARIGAELGADIVKTKY-TGDAESF----KEVVEGC----------PVPVVIAGGPKKDSEEEFLKMVYDAMEAGA--AGV 211 (235)
T ss_pred HHHHHHHCCCEEEecC-CCCHHHH----HHHHhcC----------CCCEEEeCCCCCCCHHHHHHHHHHHHHcCC--cEE
Confidence 4445556777777742 4454332 3333321 235789998743 55888888884 588
Q ss_pred eecCcccccC
Q 026886 85 GIGTYLVTCY 94 (231)
Q Consensus 85 GVGT~Lvt~~ 94 (231)
-+|+++..+.
T Consensus 212 ~vg~~i~~~~ 221 (235)
T cd00958 212 AVGRNIFQRP 221 (235)
T ss_pred EechhhhcCC
Confidence 8999998654
No 187
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=37.85 E-value=1e+02 Score=25.90 Aligned_cols=38 Identities=18% Similarity=0.193 Sum_probs=22.8
Q ss_pred HHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHH
Q 026886 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFR 44 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld 44 (231)
|+-.++..|.+.|.....+++=.=|...+...++++++
T Consensus 20 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~~~~ 57 (170)
T cd00885 20 NAAFLAKELAELGIEVYRVTVVGDDEDRIAEALRRASE 57 (170)
T ss_pred HHHHHHHHHHHCCCEEEEEEEeCCCHHHHHHHHHHHHh
Confidence 44556666777777776666655565555555555443
No 188
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=37.81 E-value=1.1e+02 Score=26.08 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=37.3
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCH------------HHHHHHHhcCCceeEEeecCc
Q 026886 29 SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE------------ETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 29 SGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde------------~~I~~L~~~ga~id~fGVGT~ 89 (231)
++++...-..+.++|..... .-..+.-|++||+-|. ..+.+|.+.|..+..||+|+.
T Consensus 105 ~~~l~~aL~~a~~~~~~~~~----~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~ 173 (218)
T cd01458 105 QVSLSDALWVCLDLFSKGKK----KKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDKGIELELFPLSSP 173 (218)
T ss_pred CccHHHHHHHHHHHHHhccc----cccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCC
Confidence 45665555556666665211 1235667888997764 446667777888999999875
No 189
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=37.72 E-value=94 Score=29.69 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=33.9
Q ss_pred CCeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccccCCCCcce
Q 026886 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 100 (231)
Q Consensus 56 ~~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~ 100 (231)
.++.|+++|++ +-..|..-...| .|+..+||.|+.+...|.-.
T Consensus 255 ~~vpVIAdGGI~~~~diakAlalG--Ad~Vm~Gs~fa~t~Espg~~ 298 (368)
T PRK08649 255 RYVHVIADGGIGTSGDIAKAIACG--ADAVMLGSPLARAAEAPGRG 298 (368)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcC--CCeecccchhcccccCCCcc
Confidence 46899999999 666677777778 57889999999887766443
No 190
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=36.82 E-value=1.2e+02 Score=28.09 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=30.8
Q ss_pred CCeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCccccc
Q 026886 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 56 ~~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
.++.|++|||+ +...+.+....| .|..|+|+.+...
T Consensus 253 ~~ipVIasGGI~~~~di~kaLalG--Ad~V~igr~~L~~ 289 (333)
T TIGR02151 253 PDAPIIASGGLRTGLDVAKAIALG--ADAVGMARPFLKA 289 (333)
T ss_pred CCCeEEEECCCCCHHHHHHHHHhC--CCeehhhHHHHHH
Confidence 35799999999 889999988889 7899999988653
No 191
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=36.58 E-value=2.5e+02 Score=27.51 Aligned_cols=71 Identities=17% Similarity=0.219 Sum_probs=49.2
Q ss_pred CccEEEeCCC------ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCccccc
Q 026886 21 KAVGIRLDSG------DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 21 ~~~GVRlDSG------Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
...=+--||| .+..|--.+++..|+...+++.. .++.|++.||| |.+.+......|+ |..=+||.+..|
T Consensus 179 D~Ivvq~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~~~~--~~ipViAAGGI~tg~~vaAA~alGA--d~V~~GT~flat 254 (418)
T cd04742 179 DDITVEADSGGHTDNRPLSVLLPTIIRLRDELAARYGYR--RPIRVGAAGGIGTPEAAAAAFALGA--DFIVTGSINQCT 254 (418)
T ss_pred CEEEEcccCCCCCCCccHHhHHHHHHHHHHHHhhccccC--CCceEEEECCCCCHHHHHHHHHcCC--cEEeeccHHHhC
Confidence 4433345665 24455555666666654444433 37899999999 9999999999995 577799999887
Q ss_pred CC
Q 026886 94 YA 95 (231)
Q Consensus 94 ~~ 95 (231)
..
T Consensus 255 ~E 256 (418)
T cd04742 255 VE 256 (418)
T ss_pred cc
Confidence 54
No 192
>PRK08005 epimerase; Validated
Probab=36.57 E-value=83 Score=27.77 Aligned_cols=33 Identities=21% Similarity=0.211 Sum_probs=28.8
Q ss_pred EEEEeCCCCHHHHHHHHhcCCceeEEeecCccccc
Q 026886 59 SITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 59 ~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
.|-+-||++++.+..+.+.| +|.|=+||.+...
T Consensus 165 ~I~VDGGI~~~~i~~l~~aG--ad~~V~GsaiF~~ 197 (210)
T PRK08005 165 ECWADGGITLRAARLLAAAG--AQHLVIGRALFTT 197 (210)
T ss_pred CEEEECCCCHHHHHHHHHCC--CCEEEEChHhhCC
Confidence 59999999999999999999 5778788888753
No 193
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=36.55 E-value=54 Score=34.04 Aligned_cols=43 Identities=23% Similarity=0.179 Sum_probs=26.3
Q ss_pred CCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCH
Q 026886 19 GYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE 68 (231)
Q Consensus 19 g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde 68 (231)
-..+.|++=.-+=-..+.+.+|+.|++. |+.++|||++++.-+
T Consensus 173 ~idYvg~~NEr~~~~~~ik~lr~~l~~~-------gy~~vkiva~D~~~~ 215 (669)
T PF02057_consen 173 DIDYVGIWNERGFDVNYIKWLRKALNSN-------GYNKVKIVAADNNWE 215 (669)
T ss_dssp ---EE-S-TTS---HHHHHHHHHHHHHT-------T-TT-EEEEEEE-ST
T ss_pred CceEechhhccCCChhHHHHHHHHHhhc-------cccceEEEEeCCCcc
Confidence 3445676655554456678999999997 999999999998864
No 194
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=36.43 E-value=1.8e+02 Score=26.39 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=27.7
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccc
Q 026886 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 57 ~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
++.|++|||+ +...+.+....| .|+.+|||.+..
T Consensus 227 ~ipvia~GGI~~~~d~~kal~lG--Ad~V~ig~~~l~ 261 (299)
T cd02809 227 RIEVLLDGGIRRGTDVLKALALG--ADAVLIGRPFLY 261 (299)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC--CCEEEEcHHHHH
Confidence 5789999999 677777777788 689999997765
No 195
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=36.04 E-value=2.3e+02 Score=24.84 Aligned_cols=63 Identities=22% Similarity=0.178 Sum_probs=36.6
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga 79 (231)
...++.++++|.+.|.+..=|-++|.+-....+++++.+ +++.|=+=.=+|.+..+...+.|+
T Consensus 15 ~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~------------~~~~vGAGTVl~~e~a~~ai~aGA 77 (201)
T PRK06015 15 VEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV------------EEAIVGAGTILNAKQFEDAAKAGS 77 (201)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC------------CCCEEeeEeCcCHHHHHHHHHcCC
Confidence 456777788888888887778887777333333332222 233444444456666666555554
No 196
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=35.87 E-value=85 Score=24.10 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=27.7
Q ss_pred CCCCeEEEEeCCCCH------HHHHHHHhcCCceeEEeecC
Q 026886 54 DFEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde------~~I~~L~~~ga~id~fGVGT 88 (231)
+-.++-|++|+|.+. +.++++.+++.++..+|+|.
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~ 142 (161)
T cd01450 102 NVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGP 142 (161)
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccc
Confidence 556778899988653 45777888899999999997
No 197
>PRK03670 competence damage-inducible protein A; Provisional
Probab=35.72 E-value=1e+02 Score=27.93 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=34.9
Q ss_pred HHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC
Q 026886 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL 66 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L 66 (231)
|+-.++..|.+.|+.+..+++=.=|...+...+++++.+. .+ -|+.|||+
T Consensus 21 N~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~---------~D-lVIttGGl 70 (252)
T PRK03670 21 NSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRK---------PE-VLVISGGL 70 (252)
T ss_pred hHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCC---------CC-EEEECCCc
Confidence 6667888899999998888877667666666565555431 24 67777774
No 198
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=35.60 E-value=1.3e+02 Score=28.61 Aligned_cols=35 Identities=9% Similarity=0.091 Sum_probs=26.6
Q ss_pred CCeEEEEeCCCC-HHHHHHHHhcCCceeEEeecCcccc
Q 026886 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 56 ~~v~Iv~S~~Ld-e~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
.++.|+.+||+. .+.+.++...| .|...|||.+.-
T Consensus 252 ~~ipIig~GGI~s~~da~e~i~aG--A~~Vqi~ta~~~ 287 (420)
T PRK08318 252 RGLPISGIGGIETWRDAAEFILLG--AGTVQVCTAAMQ 287 (420)
T ss_pred CCCCEEeecCcCCHHHHHHHHHhC--CChheeeeeecc
Confidence 468999999975 56666666688 568888888765
No 199
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=35.41 E-value=82 Score=24.36 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=26.6
Q ss_pred CCCeEEEEeCCCCH----HHHHHHHhcCCceeEEeecCccc
Q 026886 55 FEKMSITASNDLNE----ETLDALNKQGHEVDAFGIGTYLV 91 (231)
Q Consensus 55 ~~~v~Iv~S~~Lde----~~I~~L~~~ga~id~fGVGT~Lv 91 (231)
-...-|++|+|-+. +.+..+.+++..+..+|+|+.-.
T Consensus 99 ~~~~iv~iTDG~~~~~~~~~~~~~~~~~i~i~~v~~~~~~~ 139 (172)
T PF13519_consen 99 RRRAIVLITDGEDNSSDIEAAKALKQQGITIYTVGIGSDSD 139 (172)
T ss_dssp EEEEEEEEES-TTHCHHHHHHHHHHCTTEEEEEEEES-TT-
T ss_pred CceEEEEecCCCCCcchhHHHHHHHHcCCeEEEEEECCCcc
Confidence 56678999999875 46677777888888888887654
No 200
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=34.99 E-value=2.4e+02 Score=23.96 Aligned_cols=64 Identities=20% Similarity=0.032 Sum_probs=38.7
Q ss_pred HHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 12 a~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
.+++.+.||.+.=...| +.......++..+.. .+ -+--|+.+...|...+..+.+.|.|+-.++
T Consensus 22 ~~~~~~~gy~~~~~~~~--~~~~~~~~~~~~l~~----~~----vdgvi~~~~~~~~~~~~~l~~~~iPvv~~~ 85 (269)
T cd06297 22 EGALLEQRYDLALFPLL--SLARLKRYLESTTLA----YL----TDGLLLASYDLTERLAERRLPTERPVVLVD 85 (269)
T ss_pred HHHHHHCCCEEEEEeCC--CcHHHHHHHHHHHHh----cC----CCEEEEecCccChHHHHHHhhcCCCEEEEc
Confidence 34566778876544444 322222333333433 23 333777777888888888988898876664
No 201
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=34.90 E-value=2.5e+02 Score=24.64 Aligned_cols=27 Identities=19% Similarity=0.204 Sum_probs=18.1
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCCC
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSGD 31 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSGD 31 (231)
...|+.++++|.+.|.+..=|-+.+-+
T Consensus 26 ~~~a~~i~~al~~~Gi~~iEitl~~~~ 52 (212)
T PRK05718 26 LEDAVPLAKALVAGGLPVLEVTLRTPA 52 (212)
T ss_pred HHHHHHHHHHHHHcCCCEEEEecCCcc
Confidence 456677777777777776666666665
No 202
>COG1765 Predicted redox protein, regulator of disulfide bond formation [Posttranslational modification, protein turnover, chaperones]
Probab=33.94 E-value=32 Score=28.08 Aligned_cols=56 Identities=18% Similarity=0.248 Sum_probs=37.0
Q ss_pred HHHHHHHHHhcCCCccEEEeC-CCChHHHHHHHHHHHHHHHHhhCCCCCCC--eEEEEeCCCCHHHHHHHHhcC
Q 026886 8 FCAVALALNDLGYKAVGIRLD-SGDLAYLSCEARKFFRTIEKEFGVPDFEK--MSITASNDLNEETLDALNKQG 78 (231)
Q Consensus 8 ai~Va~~L~~~g~~~~GVRlD-SGDl~~ls~~~R~~ld~~~~~l~i~g~~~--v~Iv~S~~Lde~~I~~L~~~g 78 (231)
++.|...|+..|..+.+++++ +|+ .-++. -.++.. +.+.+.|++|+++++++.+..
T Consensus 54 ~~~v~~~l~k~~~~~~~~~v~v~~~----------~~~~~-----~~~~~~i~i~~~v~gd~~~e~~~~~i~~a 112 (137)
T COG1765 54 AITVRLILKKKRIDVEDLEVEVTGE----------RREEE-----PRGFTEINIHFVVKGDLDEEKLKRAVELA 112 (137)
T ss_pred hhHHHHHHHHcCCCcceEEEEEEEE----------EccCC-----CceEEEEEEEEEEecCCCHHHHHHHHHHH
Confidence 455666677778777777766 343 11111 114444 789999999999999988753
No 203
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=33.88 E-value=1.2e+02 Score=26.46 Aligned_cols=64 Identities=23% Similarity=0.221 Sum_probs=40.6
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~ 80 (231)
...++.++++|.+.|.+..=|-+.|.+-....+++++.+ +++.|=+-.=+|.+.++...+.|+.
T Consensus 19 ~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~------------p~~~vGAGTV~~~e~a~~a~~aGA~ 82 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF------------PDLLVGAGTVLTAEQAEAAIAAGAQ 82 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH------------TTSEEEEES--SHHHHHHHHHHT-S
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC------------CCCeeEEEeccCHHHHHHHHHcCCC
Confidence 467889999999999999999999988433333333222 4556666666777777777777653
No 204
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=32.90 E-value=44 Score=31.77 Aligned_cols=35 Identities=6% Similarity=0.163 Sum_probs=31.1
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccccc
Q 026886 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
++.+++-||+|++.+.++.+.| .++++|++.+..+
T Consensus 294 ~iPv~AiGGI~~~ni~~l~~~G--a~gVAvisaI~~a 328 (347)
T PRK02615 294 PIPWFAIGGIDKSNIPEVLQAG--AKRVAVVRAIMGA 328 (347)
T ss_pred CCCEEEECCCCHHHHHHHHHcC--CcEEEEeHHHhCC
Confidence 3689999999999999999988 6899999999764
No 205
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=32.77 E-value=2e+02 Score=22.67 Aligned_cols=37 Identities=19% Similarity=0.216 Sum_probs=24.2
Q ss_pred CCCCCeEEEEeCCCC----HHHHHHHHh-cCCceeEEeecCc
Q 026886 53 PDFEKMSITASNDLN----EETLDALNK-QGHEVDAFGIGTY 89 (231)
Q Consensus 53 ~g~~~v~Iv~S~~Ld----e~~I~~L~~-~ga~id~fGVGT~ 89 (231)
++..++.|++|+|-+ ......|.+ .|..+-++|+|..
T Consensus 101 ~~~~~~villTDG~~~~~~~~~~~~l~~~~~v~v~~vg~g~~ 142 (163)
T cd01476 101 EGIPKVVVVLTDGRSHDDPEKQARILRAVPNIETFAVGTGDP 142 (163)
T ss_pred CCCCeEEEEECCCCCCCchHHHHHHHhhcCCCEEEEEECCCc
Confidence 345578999998755 234555666 6666667777754
No 206
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=32.69 E-value=1.4e+02 Score=28.18 Aligned_cols=62 Identities=18% Similarity=0.250 Sum_probs=42.0
Q ss_pred ccEEEeCCCC--hHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHH-HHhcCC----------ceeEEeecC
Q 026886 22 AVGIRLDSGD--LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDA-LNKQGH----------EVDAFGIGT 88 (231)
Q Consensus 22 ~~GVRlDSGD--l~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~-L~~~ga----------~id~fGVGT 88 (231)
+.=|++++.. ..+|.+++++.| |++++-|+-+++-|++.+.+ +-..++ .+-+.|+|+
T Consensus 55 iV~I~i~~~~~~~~~Le~~L~~~f----------gL~~a~VVp~~~~~~~~~~~~lg~aaA~~l~~~l~~gdvigV~wGr 124 (321)
T COG2390 55 IVKISINSPVEGCLELEQQLKERF----------GLKEAIVVPSDSDADDSILRRLGRAAAQYLESLLKPGDVIGVGWGR 124 (321)
T ss_pred eEEEEeCCCCcchHHHHHHHHHhc----------CCCeEEEEcCCCCCchHHHHHHHHHHHHHHHHhCCCCCEEEEeccH
Confidence 6788999653 345566666666 88998888888777666655 433222 377888888
Q ss_pred ccccc
Q 026886 89 YLVTC 93 (231)
Q Consensus 89 ~Lvt~ 93 (231)
.+.+.
T Consensus 125 Tv~a~ 129 (321)
T COG2390 125 TLSAV 129 (321)
T ss_pred HHHHH
Confidence 88664
No 207
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=32.61 E-value=2e+02 Score=28.08 Aligned_cols=52 Identities=15% Similarity=0.205 Sum_probs=35.4
Q ss_pred HhcCCCccEEEeCCCChH-------HHHHHHHHHHHHHHHhhCCCCCCCeEEEEeC---CCCHHHHHHHHh
Q 026886 16 NDLGYKAVGIRLDSGDLA-------YLSCEARKFFRTIEKEFGVPDFEKMSITASN---DLNEETLDALNK 76 (231)
Q Consensus 16 ~~~g~~~~GVRlDSGDl~-------~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~---~Lde~~I~~L~~ 76 (231)
+.+|-.+..||+.|||+. .+++-+.+.++.. .++ -|+.|. .-|.+.+..-.+
T Consensus 150 ~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av-------~vP--LIL~gsg~~~kD~eVLeaaLe 211 (389)
T TIGR00381 150 KEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAV-------DVP--IVIGGSGNPEKDPLVLEKAAE 211 (389)
T ss_pred HHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhC-------CCC--EEEeCCCCCcCCHHHHHHHHH
Confidence 456889999999999998 8888888877764 211 233334 456666655544
No 208
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=32.53 E-value=2.8e+02 Score=23.00 Aligned_cols=62 Identities=18% Similarity=0.116 Sum_probs=34.5
Q ss_pred HHHHhcCCCccEEEeCCC-ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 13 LALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 13 ~~L~~~g~~~~GVRlDSG-Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
+++++.|+.+. -.+++ |...+...++.+... + -+.-|+.+.+.+...+.++.++|.|+-.|+
T Consensus 23 ~~a~~~g~~~~--~~~~~~~~~~~~~~~~~l~~~--------~-~dgiii~~~~~~~~~l~~~~~~~ipvV~~~ 85 (267)
T cd06283 23 DVCRAHGYQVL--VCNSDNDPEKEKEYLESLLAY--------Q-VDGLIVNPTGNNKELYQRLAKNGKPVVLVD 85 (267)
T ss_pred HHHHHcCCEEE--EEcCCCCHHHHHHHHHHHHHc--------C-cCEEEEeCCCCChHHHHHHhcCCCCEEEEc
Confidence 34566687663 34444 544333223332221 2 233566666667777888888887766654
No 209
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=32.20 E-value=1.1e+02 Score=27.06 Aligned_cols=77 Identities=16% Similarity=0.138 Sum_probs=46.7
Q ss_pred HHHHHHHHHHhcCCCc-cEEEeCCC-ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCCceeE
Q 026886 7 NFCAVALALNDLGYKA-VGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDA 83 (231)
Q Consensus 7 nai~Va~~L~~~g~~~-~GVRlDSG-Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Ld-e~~I~~L~~~ga~id~ 83 (231)
+.+++|+.+.+.|.+. .=+=+|.. .......++.+.+.+. .++.|.++||+. .+.+.++...| ++.
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~---------~~~pv~~~GGi~s~~d~~~~~~~G--a~~ 99 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET---------VFIPLTVGGGIKSIEDVDKLLRAG--ADK 99 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh---------cCCCEEEECCCCCHHHHHHHHHcC--CCE
Confidence 6788888888877542 11222211 0000111111222221 246899999997 89999999888 667
Q ss_pred EeecCcccccC
Q 026886 84 FGIGTYLVTCY 94 (231)
Q Consensus 84 fGVGT~Lvt~~ 94 (231)
.-|||.+..+.
T Consensus 100 vivgt~~~~~p 110 (254)
T TIGR00735 100 VSINTAAVKNP 110 (254)
T ss_pred EEEChhHhhCh
Confidence 88999988753
No 210
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=32.13 E-value=85 Score=26.89 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=25.2
Q ss_pred CCeEEEEeCCCC----HHHHHHHHhcCCceeEEeecC
Q 026886 56 EKMSITASNDLN----EETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 56 ~~v~Iv~S~~Ld----e~~I~~L~~~ga~id~fGVGT 88 (231)
+++-|++++|-. .+.+.++++.|..|-++|||.
T Consensus 109 ~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~ 145 (224)
T cd01475 109 PRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGR 145 (224)
T ss_pred CeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCc
Confidence 677899999965 344566777888888888885
No 211
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=32.09 E-value=1.4e+02 Score=27.26 Aligned_cols=79 Identities=19% Similarity=0.346 Sum_probs=55.8
Q ss_pred HHHHHHHHHHHhcCCCc--cEE---EeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026886 6 PNFCAVALALNDLGYKA--VGI---RLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~--~GV---RlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~ 80 (231)
...+++|++++++|..+ .|. |.--.+..-+..+--++|.++++++|++- +|.-.|++.+..+.+.
T Consensus 29 e~~~~~a~~~~~~g~~~~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~~-------~Tev~d~~~v~~~~e~--- 98 (250)
T PRK13397 29 DHIRLAASSAKKLGYNYFRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLLS-------VSEIMSERQLEEAYDY--- 98 (250)
T ss_pred HHHHHHHHHHHHcCCCEEEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCCE-------EEeeCCHHHHHHHHhc---
Confidence 45788899998887543 111 32223333344456678888888898874 4557999999999883
Q ss_pred eeEEeecCcccccC
Q 026886 81 VDAFGIGTYLVTCY 94 (231)
Q Consensus 81 id~fGVGT~Lvt~~ 94 (231)
+|.+=||+...+.+
T Consensus 99 vdilqIgs~~~~n~ 112 (250)
T PRK13397 99 LDVIQVGARNMQNF 112 (250)
T ss_pred CCEEEECcccccCH
Confidence 89999999998863
No 212
>PRK05628 coproporphyrinogen III oxidase; Validated
Probab=31.90 E-value=2.6e+02 Score=26.00 Aligned_cols=68 Identities=15% Similarity=0.263 Sum_probs=46.3
Q ss_pred CccEEEeCCCChHHHH-HHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCceeEEeecC
Q 026886 21 KAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 21 ~~~GVRlDSGDl~~ls-~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~id~fGVGT 88 (231)
.+.-|-+--|.+..++ .++.++++.+...+++..-..+.+-+. +.++++.+..|.+.|...-++||=|
T Consensus 59 ~i~~i~~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~t~e~~p~~i~~e~l~~l~~~G~~rvslGvQS 128 (375)
T PRK05628 59 PVSTVFVGGGTPSLLGAEGLARVLDAVRDTFGLAPGAEVTTEANPESTSPEFFAALRAAGFTRVSLGMQS 128 (375)
T ss_pred ceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEeccc
Confidence 3456666667776664 457777777777777754334444333 6799999999999987666777654
No 213
>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04.
Probab=31.88 E-value=33 Score=23.32 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=18.1
Q ss_pred CHHHHHHHHhcCCceeEEeec
Q 026886 67 NEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 67 de~~I~~L~~~ga~id~fGVG 87 (231)
|++.+..|.+.|.||..||=+
T Consensus 3 d~eV~~~LR~lgePi~lFGE~ 23 (44)
T smart00500 3 DSEVIRRLRELGEPITLFGED 23 (44)
T ss_pred HHHHHHHHHHcCCCeeecCCC
Confidence 678889999999999999854
No 214
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=31.41 E-value=1.3e+02 Score=26.10 Aligned_cols=72 Identities=15% Similarity=0.183 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCCc-cEEEeCC-----CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCC
Q 026886 7 NFCAVALALNDLGYKA-VGIRLDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGH 79 (231)
Q Consensus 7 nai~Va~~L~~~g~~~-~GVRlDS-----GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Ld-e~~I~~L~~~ga 79 (231)
+.+.+|+.|.+.|... .=+=+|. |.-..+. +++-++ .++.|+++||+. .+.+.++.+.|
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i---~~i~~~----------~~~pv~~~GGI~s~~d~~~~l~~G- 93 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVV---ERVAEE----------VFIPLTVGGGIRSLEDARRLLRAG- 93 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHH---HHHHHh----------CCCCEEEeCCCCCHHHHHHHHHcC-
Confidence 6788999998888651 1222221 1112222 222222 235799999997 67888888877
Q ss_pred ceeEEeecCccccc
Q 026886 80 EVDAFGIGTYLVTC 93 (231)
Q Consensus 80 ~id~fGVGT~Lvt~ 93 (231)
++..-+||.+..+
T Consensus 94 -~~~v~ig~~~~~~ 106 (243)
T cd04731 94 -ADKVSINSAAVEN 106 (243)
T ss_pred -CceEEECchhhhC
Confidence 6677888888764
No 215
>PRK07094 biotin synthase; Provisional
Probab=31.40 E-value=2.6e+02 Score=25.21 Aligned_cols=68 Identities=26% Similarity=0.397 Sum_probs=41.7
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCCC-hHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCc
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSGD-LAYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHE 80 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSGD-l~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~ 80 (231)
+...++.++++.+.|.+ .|-+=+|+ +.+-...+.++++..+++. ++.|.+| +.++++.+..|.+.|..
T Consensus 72 ~eei~~~~~~~~~~g~~--~i~l~gG~~~~~~~~~l~~l~~~i~~~~------~l~i~~~~g~~~~e~l~~Lk~aG~~ 141 (323)
T PRK07094 72 PEEILECAKKAYELGYR--TIVLQSGEDPYYTDEKIADIIKEIKKEL------DVAITLSLGERSYEEYKAWKEAGAD 141 (323)
T ss_pred HHHHHHHHHHHHHCCCC--EEEEecCCCCCCCHHHHHHHHHHHHccC------CceEEEecCCCCHHHHHHHHHcCCC
Confidence 45566777777766654 55554664 3222344556666654322 2345555 56789999999999854
No 216
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=31.40 E-value=1.5e+02 Score=27.49 Aligned_cols=35 Identities=17% Similarity=0.158 Sum_probs=26.8
Q ss_pred CCeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCccccc
Q 026886 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 56 ~~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
.++.|+++||+ +.+.+.++.+ + +|+..||+.+...
T Consensus 204 ~~iPVI~nGgI~s~eda~~~l~-~--aDgVmIGRa~l~n 239 (333)
T PRK11815 204 PHLTIEINGGIKTLEEAKEHLQ-H--VDGVMIGRAAYHN 239 (333)
T ss_pred CCCeEEEECCcCCHHHHHHHHh-c--CCEEEEcHHHHhC
Confidence 45788889888 6777777776 3 7888888888764
No 217
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=30.97 E-value=44 Score=29.83 Aligned_cols=56 Identities=30% Similarity=0.430 Sum_probs=39.0
Q ss_pred HHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecC
Q 026886 11 VALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 11 Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT 88 (231)
+...|+..|||+.++| +....++|+.+++. ++++..+=++...+++.-. +..|+|-
T Consensus 76 L~e~Lk~~g~Rf~n~r------aeyIVeaR~~~~~l------------k~~v~~~~~~~vaRE~Lv~----nikGiGy 131 (210)
T COG1059 76 LREKLKEVGYRFYNVR------AEYIVEAREKFDDL------------KIIVKADENEKVARELLVE----NIKGIGY 131 (210)
T ss_pred HHHHHHHhcchhcccc------hHHHHHHHHHHHHH------------HHHHhcCcchHHHHHHHHH----HcccccH
Confidence 5556778899999988 44566677777654 5556666677778887653 4677774
No 218
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=30.89 E-value=2e+02 Score=22.53 Aligned_cols=34 Identities=12% Similarity=0.165 Sum_probs=23.6
Q ss_pred CCeEEEEeCCCCH---HHH---HHHH-hcCCceeEEeecCc
Q 026886 56 EKMSITASNDLNE---ETL---DALN-KQGHEVDAFGIGTY 89 (231)
Q Consensus 56 ~~v~Iv~S~~Lde---~~I---~~L~-~~ga~id~fGVGT~ 89 (231)
..+-|++|++++. ..+ ..+. ..+..+-.+|||++
T Consensus 95 ~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~ 135 (152)
T cd01462 95 KADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGDH 135 (152)
T ss_pred CceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecCC
Confidence 5678999999743 233 3344 34678999999984
No 219
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=30.70 E-value=2.2e+02 Score=22.80 Aligned_cols=34 Identities=18% Similarity=0.334 Sum_probs=23.9
Q ss_pred CCCeEEEEeCCCC------HHHHHH-HHhcCCceeEEeecC
Q 026886 55 FEKMSITASNDLN------EETLDA-LNKQGHEVDAFGIGT 88 (231)
Q Consensus 55 ~~~v~Iv~S~~Ld------e~~I~~-L~~~ga~id~fGVGT 88 (231)
-.++-|++|++.+ ...+.+ +.+.|..|.++|+|+
T Consensus 102 ~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~ 142 (180)
T cd01467 102 KERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGK 142 (180)
T ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecC
Confidence 3577889998853 223333 456788999999997
No 220
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=30.26 E-value=1.4e+02 Score=28.65 Aligned_cols=128 Identities=25% Similarity=0.286 Sum_probs=79.2
Q ss_pred HHHHHHHHHhcCCCccEEEeCC--CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 8 FCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 8 ai~Va~~L~~~g~~~~GVRlDS--GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
..+.+.+|-+.|-. -+=+|| |.-.++...++ +.++ -++++.|++=|=-+.+..+.|.+.|+..--.|
T Consensus 109 ~~er~~~L~~agvD--~ivID~a~g~s~~~~~~ik----~ik~-----~~~~~~viaGNV~T~e~a~~L~~aGad~vkVG 177 (352)
T PF00478_consen 109 DFERAEALVEAGVD--VIVIDSAHGHSEHVIDMIK----KIKK-----KFPDVPVIAGNVVTYEGAKDLIDAGADAVKVG 177 (352)
T ss_dssp HHHHHHHHHHTT-S--EEEEE-SSTTSHHHHHHHH----HHHH-----HSTTSEEEEEEE-SHHHHHHHHHTT-SEEEES
T ss_pred HHHHHHHHHHcCCC--EEEccccCccHHHHHHHHH----HHHH-----hCCCceEEecccCCHHHHHHHHHcCCCEEEEe
Confidence 56777788887764 555664 67555544433 3333 24588999999999999999999998777777
Q ss_pred ec------CcccccCCCCcceeEEEEeEEC---CcceeeccCCCCcCCCCCc--ceeeeecCCCCCceeeEEecCCCC
Q 026886 86 IG------TYLVTCYAQAALGCVFKLVEIN---KQPRIKLSEDVSKVSIPCK--KRSYRLYGKEGYPLVDIMTGENEP 152 (231)
Q Consensus 86 VG------T~Lvt~~~~p~l~~VyKLve~~---g~P~~KlS~~~~K~t~PG~--K~v~R~~~~~g~~~~D~i~l~~e~ 152 (231)
|| |+.+|.-+.|-+..||+..+.. +.|++ +| |=+..+|. |.+ -.+++-.+++-+++-.+|.
T Consensus 178 iGpGsiCtTr~v~GvG~PQ~tAv~~~a~~a~~~~v~iI--AD--GGi~~sGDi~KAl--a~GAd~VMlG~llAgt~Es 249 (352)
T PF00478_consen 178 IGPGSICTTREVTGVGVPQLTAVYECAEAARDYGVPII--AD--GGIRTSGDIVKAL--AAGADAVMLGSLLAGTDES 249 (352)
T ss_dssp SSSSTTBHHHHHHSBSCTHHHHHHHHHHHHHCTTSEEE--EE--SS-SSHHHHHHHH--HTT-SEEEESTTTTTBTTS
T ss_pred ccCCcccccccccccCCcHHHHHHHHHHHhhhccCcee--ec--CCcCcccceeeee--eecccceeechhhccCcCC
Confidence 77 3344455678888888877653 34554 33 33444564 333 2344555555666666764
No 221
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=30.00 E-value=2.7e+02 Score=23.04 Aligned_cols=65 Identities=22% Similarity=0.250 Sum_probs=37.0
Q ss_pred HHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeec
Q 026886 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 12 a~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVG 87 (231)
..++++.|+.+.=+..|+.+ .....++.++.. + -+.-|+.+.+.+...+..+.+.|.|+-.++..
T Consensus 22 ~~~~~~~g~~~~~~~~~~~~--~~~~~i~~~~~~-----~----vdgiii~~~~~~~~~~~~~~~~~ipvV~~~~~ 86 (266)
T cd06278 22 SRALQARGYQPLLINTDDDE--DLDAALRQLLQY-----R----VDGVIVTSGTLSSELAEECRRNGIPVVLINRY 86 (266)
T ss_pred HHHHHHCCCeEEEEcCCCCH--HHHHHHHHHHHc-----C----CCEEEEecCCCCHHHHHHHhhcCCCEEEECCc
Confidence 34566778887655445432 222223333322 2 33356666666666778888888887777544
No 222
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=29.95 E-value=2.1e+02 Score=26.49 Aligned_cols=34 Identities=15% Similarity=0.183 Sum_probs=15.7
Q ss_pred eEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccc
Q 026886 58 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 58 v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
+.|+++||+ +.+.+.++.+.+ -.|+..||.-+..
T Consensus 195 iPVi~nGdI~t~~da~~~l~~~-g~DgVmiGRg~l~ 229 (312)
T PRK10550 195 IPVIANGEIWDWQSAQQCMAIT-GCDAVMIGRGALN 229 (312)
T ss_pred CcEEEeCCcCCHHHHHHHHhcc-CCCEEEEcHHhHh
Confidence 345555555 444444444321 1455555555444
No 223
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=29.76 E-value=1.1e+02 Score=28.18 Aligned_cols=63 Identities=21% Similarity=0.260 Sum_probs=42.3
Q ss_pred CCCccEEEe-CCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccccCCC
Q 026886 19 GYKAVGIRL-DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQ 96 (231)
Q Consensus 19 g~~~~GVRl-DSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~~~~ 96 (231)
|...=|=|- +.+++..|..++++.++ +.+++.||| |-+.+......| .|+.=+||.+..+...
T Consensus 164 G~eAGGH~g~~~~~~~~L~~~v~~~~~-------------iPViaAGGI~dg~~iaaal~lG--A~gV~~GTrFl~t~Es 228 (330)
T PF03060_consen 164 GPEAGGHRGFEVGSTFSLLPQVRDAVD-------------IPVIAAGGIADGRGIAAALALG--ADGVQMGTRFLATEES 228 (330)
T ss_dssp -TTSSEE---SSG-HHHHHHHHHHH-S-------------S-EEEESS--SHHHHHHHHHCT---SEEEESHHHHTSTTS
T ss_pred ccccCCCCCccccceeeHHHHHhhhcC-------------CcEEEecCcCCHHHHHHHHHcC--CCEeecCCeEEecccc
Confidence 455556666 55567777766666553 689999999 888899999999 5688899999987654
No 224
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=29.47 E-value=3.3e+02 Score=22.61 Aligned_cols=62 Identities=11% Similarity=0.054 Sum_probs=34.9
Q ss_pred HHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 14 ~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
++++.|+.+.=+. ...|.......++.+++. + -+.-|+.+...++..+..+.+.+.|+-.++
T Consensus 24 ~~~~~g~~~~~~~-~~~~~~~~~~~i~~l~~~--------~-vdgiii~~~~~~~~~~~~l~~~~ipvV~~~ 85 (268)
T cd06298 24 IATMYKYNIILSN-SDNDKEKELKVLNNLLAK--------Q-VDGIIFMGGKISEEHREEFKRSPTPVVLAG 85 (268)
T ss_pred HHHHcCCeEEEEe-CCCCHHHHHHHHHHHHHh--------c-CCEEEEeCCCCcHHHHHHHhcCCCCEEEEc
Confidence 3566688765332 223544444334443332 2 344566666677778888877787765554
No 225
>PRK15108 biotin synthase; Provisional
Probab=29.41 E-value=3.6e+02 Score=25.19 Aligned_cols=72 Identities=11% Similarity=0.099 Sum_probs=39.5
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCC-Ch-HHHHHHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCce
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSG-DL-AYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEV 81 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSG-Dl-~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~i 81 (231)
....++.|+++.+.|.+=..+ .=|| ++ ......+.++++.+++ . + +.+++| |.++++.+.+|.+.| +
T Consensus 78 ~eEI~~~a~~~~~~G~~~i~i-~~~g~~p~~~~~e~i~~~i~~ik~-~---~---i~v~~s~G~ls~e~l~~LkeAG--l 147 (345)
T PRK15108 78 VEQVLESARKAKAAGSTRFCM-GAAWKNPHERDMPYLEQMVQGVKA-M---G---LETCMTLGTLSESQAQRLANAG--L 147 (345)
T ss_pred HHHHHHHHHHHHHcCCCEEEE-EecCCCCCcchHHHHHHHHHHHHh-C---C---CEEEEeCCcCCHHHHHHHHHcC--C
Confidence 345667777777777542211 1111 22 1122334444444432 2 2 344555 679999999999999 5
Q ss_pred eEEee
Q 026886 82 DAFGI 86 (231)
Q Consensus 82 d~fGV 86 (231)
|.|.+
T Consensus 148 d~~n~ 152 (345)
T PRK15108 148 DYYNH 152 (345)
T ss_pred CEEee
Confidence 66554
No 226
>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.34 E-value=3.4e+02 Score=22.75 Aligned_cols=66 Identities=14% Similarity=0.101 Sum_probs=35.8
Q ss_pred HHHHHhcCCCccEEEeCC-CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC--HHHHHHHHhcCCceeEEee
Q 026886 12 ALALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 12 a~~L~~~g~~~~GVRlDS-GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Ld--e~~I~~L~~~ga~id~fGV 86 (231)
..++.++|+.+.=+..++ +|.......++.++.. + .+.-|+.+.+.+ .+.++++.+.|.|+-.++.
T Consensus 22 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--------~-~dgiIi~~~~~~~~~~~i~~~~~~~ipvv~~~~ 90 (271)
T cd06321 22 EAAAKKLNPGVKVTVVSADYDLNKQVSQIDNFIAA--------K-VDLILLNAVDSKGIAPAVKRAQAAGIVVVAVDV 90 (271)
T ss_pred HHHHHHhCCCeEEEEccCCCCHHHHHHHHHHHHHh--------C-CCEEEEeCCChhHhHHHHHHHHHCCCeEEEecC
Confidence 344556444444344444 5766555444444432 2 343455554332 4567888888888777654
No 227
>PRK00876 nadE NAD synthetase; Reviewed
Probab=29.18 E-value=1.4e+02 Score=28.13 Aligned_cols=57 Identities=14% Similarity=0.053 Sum_probs=41.0
Q ss_pred CChHHHHHHHHHHHHHHHHh-hCCCCCCCeEEEEeCCCCHHHHHHHHhc-CCceeEEeecCc
Q 026886 30 GDLAYLSCEARKFFRTIEKE-FGVPDFEKMSITASNDLNEETLDALNKQ-GHEVDAFGIGTY 89 (231)
Q Consensus 30 GDl~~ls~~~R~~ld~~~~~-l~i~g~~~v~Iv~S~~Lde~~I~~L~~~-ga~id~fGVGT~ 89 (231)
.|+.+...++++.|++.-++ ++ ...+.+.+|||+|=-.+..|..+ ....+.|+|+-.
T Consensus 10 ~~~~~~~e~i~~~l~~~V~~~~~---~~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~ 68 (326)
T PRK00876 10 IDAAAEAERIRAAIREQVRGTLR---RRGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMP 68 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcC---CCCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 46777778888888777554 43 44799999999999999888643 222456777654
No 228
>PRK07360 FO synthase subunit 2; Reviewed
Probab=29.09 E-value=1.7e+02 Score=27.53 Aligned_cols=70 Identities=23% Similarity=0.228 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCCccEEEeCCC-ChHHH-HHHHHHHHHHHHHhhCCCCCCCeEEEE------------eCCCCHHHH
Q 026886 6 PNFCAVALALNDLGYKAVGIRLDSG-DLAYL-SCEARKFFRTIEKEFGVPDFEKMSITA------------SNDLNEETL 71 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~GVRlDSG-Dl~~l-s~~~R~~ld~~~~~l~i~g~~~v~Iv~------------S~~Lde~~I 71 (231)
...++.|+++.+.|.+-..+= || ++..- -.++.++++..++ .++++.|.+ +|-++++.+
T Consensus 94 eeI~~~a~~a~~~G~~~i~l~--~G~~p~~~~~e~~~~~i~~ik~-----~~~~i~i~a~s~~ei~~~~~~~G~~~~e~l 166 (371)
T PRK07360 94 AEILEKAAEAVKRGATEVCIQ--GGLHPAADSLEFYLEILEAIKE-----EFPDIHLHAFSPMEVYFAAREDGLSYEEVL 166 (371)
T ss_pred HHHHHHHHHHHhCCCCEEEEc--cCCCCCCCcHHHHHHHHHHHHH-----hCCCcceeeCCHHHHHHHHhhcCCCHHHHH
Confidence 456788888888886543333 66 22111 1223344444433 335666765 366778889
Q ss_pred HHHHhcCCceeEE
Q 026886 72 DALNKQGHEVDAF 84 (231)
Q Consensus 72 ~~L~~~ga~id~f 84 (231)
+.|.+.|. |.+
T Consensus 167 ~~LkeAGl--d~~ 177 (371)
T PRK07360 167 KALKDAGL--DSM 177 (371)
T ss_pred HHHHHcCC--CcC
Confidence 99999984 444
No 229
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=29.05 E-value=39 Score=28.76 Aligned_cols=29 Identities=41% Similarity=0.532 Sum_probs=25.7
Q ss_pred hcCCCccEEEeCCCChHHHHHHHHHHHHH
Q 026886 17 DLGYKAVGIRLDSGDLAYLSCEARKFFRT 45 (231)
Q Consensus 17 ~~g~~~~GVRlDSGDl~~ls~~~R~~ld~ 45 (231)
++|..-.|.|||++-|+.-+..+++.+++
T Consensus 64 ~LG~gs~gCrLD~~~La~A~~~l~~al~~ 92 (159)
T PF10649_consen 64 DLGPGSRGCRLDPGALAEASAALRRALAE 92 (159)
T ss_pred ccCCCCcccccCHHHHHHHHHHHHHHHhc
Confidence 45777889999999999999999999988
No 230
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=28.84 E-value=3.3e+02 Score=22.59 Aligned_cols=62 Identities=15% Similarity=0.130 Sum_probs=30.1
Q ss_pred HHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEE
Q 026886 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 13 ~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~f 84 (231)
.++++.|+.+ .-..+.+.....+.+++++.+ +.-+.-|+.+...+...+..+.+.+.|+-.|
T Consensus 27 ~~~~~~g~~~--~~~~~~~~~~~~~~~~~~~~~--------~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~ 88 (268)
T cd06271 27 EALAEHGYDL--VLLPVDPDEDPLEVYRRLVES--------GLVDGVIISRTRPDDPRVALLLERGFPFVTH 88 (268)
T ss_pred HHHHHCCceE--EEecCCCcHHHHHHHHHHHHc--------CCCCEEEEecCCCCChHHHHHHhcCCCEEEE
Confidence 3455567654 222333323333445555443 2223245554444445567777777665555
No 231
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=28.35 E-value=3.2e+02 Score=24.17 Aligned_cols=36 Identities=6% Similarity=0.142 Sum_probs=28.2
Q ss_pred CeEEEEeCCCC-------HHHHHHHHhcCCceeEEeecCcccccC
Q 026886 57 KMSITASNDLN-------EETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~Iv~S~~Ld-------e~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
.+.|+++||++ .+.+.++.+.|+. .+-+|.++....
T Consensus 192 ~iPVva~GGi~~~~~~~~~~~i~~~~~aGa~--Gia~g~~i~~~~ 234 (258)
T TIGR01949 192 PAPVVVAGGPKTNSDREFLQMIKDAMEAGAA--GVAVGRNIFQHD 234 (258)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHcCCc--EEehhhHhhcCC
Confidence 36889999998 6778888888854 888888887643
No 232
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=28.32 E-value=3.2e+02 Score=26.13 Aligned_cols=69 Identities=14% Similarity=0.110 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEee
Q 026886 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGV 86 (231)
.++.+++.|.++|.++.++..|+++. .+.+.+++++.+. .. .+++.++-|.+.+.++.+... .|.+ |
T Consensus 311 ~~~~l~~~L~elG~~~~~v~~~~~~~-~~~~~l~~~~~~~---------~~-~~~v~~~~d~~e~~~~l~~~~-~dli-i 377 (429)
T cd03466 311 FVVAITRFVLENGMVPVLIATGSESK-KLKEKLEEDLKEY---------VE-KCVILDGADFFDIESYAKELK-IDVL-I 377 (429)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCh-HHHHHHHHHHHhc---------CC-ceEEEeCCCHHHHHHHHHhcC-CCEE-E
Confidence 56777888889999988898888652 2333344444332 11 355566677888888876653 3333 4
Q ss_pred cC
Q 026886 87 GT 88 (231)
Q Consensus 87 GT 88 (231)
|+
T Consensus 378 G~ 379 (429)
T cd03466 378 GN 379 (429)
T ss_pred EC
Confidence 44
No 233
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=28.29 E-value=1.5e+02 Score=28.39 Aligned_cols=57 Identities=19% Similarity=0.190 Sum_probs=40.2
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcC---CceeEEeecCc
Q 026886 32 LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG---HEVDAFGIGTY 89 (231)
Q Consensus 32 l~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~g---a~id~fGVGT~ 89 (231)
......++++.|+++-+.- ...-..+-+.+|||+|=-.|..+..+- .++..|.||..
T Consensus 231 ~~~~~e~l~~~l~~aV~~r-~~~~~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~ 290 (467)
T TIGR01536 231 EEDLVDELRSLLEDAVKRR-LVADVPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFE 290 (467)
T ss_pred HHHHHHHHHHHHHHHHHHH-hccCCceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecC
Confidence 3456677888887764422 223356789999999999999887642 25788888864
No 234
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=28.25 E-value=1e+02 Score=26.99 Aligned_cols=33 Identities=30% Similarity=0.484 Sum_probs=27.5
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCccc
Q 026886 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLV 91 (231)
Q Consensus 57 ~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lv 91 (231)
++.+++|||+ +.+.+.+|.+.| +++.=||+.|-
T Consensus 191 ~~~viasGGv~~~~Dl~~l~~~G--~~gvivg~al~ 224 (229)
T PF00977_consen 191 NIPVIASGGVRSLEDLRELKKAG--IDGVIVGSALH 224 (229)
T ss_dssp SSEEEEESS--SHHHHHHHHHTT--ECEEEESHHHH
T ss_pred CCCEEEecCCCCHHHHHHHHHCC--CcEEEEehHhh
Confidence 3599999999 889999999888 58888998773
No 235
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=28.19 E-value=3.6e+02 Score=22.57 Aligned_cols=65 Identities=15% Similarity=0.108 Sum_probs=36.8
Q ss_pred HHHHHhcCCCccEEEeCCC-ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeec
Q 026886 12 ALALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 12 a~~L~~~g~~~~GVRlDSG-Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVG 87 (231)
..++.+.|+.+. -..+. |...... +.+.+... + -+.-|+.+-.-+...+.++.+.+.|+-.++..
T Consensus 22 ~~~~~~~~~~~~--~~~~~~~~~~~~~-~i~~l~~~-------~-~dgiii~~~~~~~~~~~~~~~~~iPvv~~~~~ 87 (265)
T cd06285 22 EEAAAERGYSTF--VANTGDNPDAQRR-AIEMLLDR-------R-VDGLILGDARSDDHFLDELTRRGVPFVLVLRH 87 (265)
T ss_pred HHHHHHCCCEEE--EEeCCCCHHHHHH-HHHHHHHc-------C-CCEEEEecCCCChHHHHHHHHcCCCEEEEccC
Confidence 344667788763 34443 5433332 33333331 2 33355555455666788888888888777654
No 236
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=27.97 E-value=3.7e+02 Score=24.25 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=38.3
Q ss_pred cCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCCceeEEeecCcccc
Q 026886 18 LGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 18 ~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Ld-e~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
+|.++.-+===||-...-+.++++.-+. +.++.+++.||++ .+.+.++.+.|| |..-|||-+=.
T Consensus 152 ~g~~~iYLEaGSGa~~~v~~~v~~~~~~---------~~~~~LivGGGIrs~e~A~~~~~aGA--D~IVvGn~iee 216 (230)
T PF01884_consen 152 LGMPIIYLEAGSGAYGPVPEEVIAAVKK---------LSDIPLIVGGGIRSPEQAREMAEAGA--DTIVVGNAIEE 216 (230)
T ss_dssp TT-SEEEEE--TTSSS-HHHHHHHHHHH---------SSSSEEEEESS--SHHHHHHHHCTTS--SEEEESCHHHH
T ss_pred hCCCEEEEEeCCCCCCCccHHHHHHHHh---------cCCccEEEeCCcCCHHHHHHHHHCCC--CEEEECCEEEE
Confidence 4555544444455433334455554443 3677999999995 778888899894 67778886643
No 237
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=27.93 E-value=2.6e+02 Score=27.62 Aligned_cols=61 Identities=16% Similarity=0.168 Sum_probs=44.6
Q ss_pred ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccccCC
Q 026886 31 DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (231)
Q Consensus 31 Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~~~ 95 (231)
.+..|-..+++.-|+...+++.+ ..+.|++.||| |.+.+......|+ |..=+||.+..|..
T Consensus 200 ~~~~Llp~i~~lrd~v~~~~~y~--~~VpViAAGGI~t~~~vaAAlaLGA--dgV~~GT~flat~E 261 (444)
T TIGR02814 200 PLVVLLPAIIRLRDTLMRRYGYR--KPIRVGAAGGIGTPEAAAAAFMLGA--DFIVTGSVNQCTVE 261 (444)
T ss_pred cHHHHHHHHHHHHHHHhhcccCC--CCceEEEeCCCCCHHHHHHHHHcCC--cEEEeccHHHhCcc
Confidence 45666666665556554444332 35789999999 9999999999995 57779999988754
No 238
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=27.81 E-value=4.2e+02 Score=25.00 Aligned_cols=135 Identities=17% Similarity=0.221 Sum_probs=75.1
Q ss_pred HHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcee--E
Q 026886 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVD--A 83 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id--~ 83 (231)
++...-+.+|-+.|...+-|=+|+-+. .+..+.+++.+.++ -++++.|++-|=-+.+.+..|.+.|+..- +
T Consensus 96 ~~~~~~~~~Lv~ag~~~d~i~iD~a~g--h~~~~~e~I~~ir~-----~~p~~~vi~g~V~t~e~a~~l~~aGad~i~vg 168 (326)
T PRK05458 96 DDEYDFVDQLAAEGLTPEYITIDIAHG--HSDSVINMIQHIKK-----HLPETFVIAGNVGTPEAVRELENAGADATKVG 168 (326)
T ss_pred HHHHHHHHHHHhcCCCCCEEEEECCCC--chHHHHHHHHHHHh-----hCCCCeEEEEecCCHHHHHHHHHcCcCEEEEC
Confidence 445556677877776567888987542 12333333333333 34667888877789999999999998643 3
Q ss_pred EeecCcccc----cCCCC--cceeEEEEeEECCcceeeccCCCCcCCCCCc-ceeeeecCCCCCceeeEEecCCCC
Q 026886 84 FGIGTYLVT----CYAQA--ALGCVFKLVEINKQPRIKLSEDVSKVSIPCK-KRSYRLYGKEGYPLVDIMTGENEP 152 (231)
Q Consensus 84 fGVGT~Lvt----~~~~p--~l~~VyKLve~~g~P~~KlS~~~~K~t~PG~-K~v~R~~~~~g~~~~D~i~l~~e~ 152 (231)
+|=||..+| ....| .+..+..+++.-..|++- + |-+..|+. .....+ +++..+++-.++..+|.
T Consensus 169 ~~~G~~~~t~~~~g~~~~~w~l~ai~~~~~~~~ipVIA--d--GGI~~~~Di~KaLa~-GA~aV~vG~~~~~~~es 239 (326)
T PRK05458 169 IGPGKVCITKIKTGFGTGGWQLAALRWCAKAARKPIIA--D--GGIRTHGDIAKSIRF-GATMVMIGSLFAGHEES 239 (326)
T ss_pred CCCCcccccccccCCCCCccHHHHHHHHHHHcCCCEEE--e--CCCCCHHHHHHHHHh-CCCEEEechhhcCCccC
Confidence 445655333 22334 232344444332356552 2 44555553 222221 44555555666666664
No 239
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=27.47 E-value=1.8e+02 Score=27.51 Aligned_cols=80 Identities=19% Similarity=0.266 Sum_probs=54.9
Q ss_pred hHHHHHHHHHHHhcCCCcc--EEEeC--C-CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC
Q 026886 5 VPNFCAVALALNDLGYKAV--GIRLD--S-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~--GVRlD--S-GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga 79 (231)
-..++.+|+++++.|.++. |+.-- | ....-+..+--++|.++++++|++- +|.=+|++.+..+.+.
T Consensus 106 ~e~~~~~A~~lk~~ga~~~r~~~fKpRTsp~sf~G~g~~gL~~L~~~~~~~Gl~v-------~tev~d~~~~~~l~~~-- 176 (335)
T PRK08673 106 EEQILEIARAVKEAGAQILRGGAFKPRTSPYSFQGLGEEGLKLLAEAREETGLPI-------VTEVMDPRDVELVAEY-- 176 (335)
T ss_pred HHHHHHHHHHHHHhchhhccCcEecCCCCCcccccccHHHHHHHHHHHHHcCCcE-------EEeeCCHHHHHHHHHh--
Confidence 4568899999988876532 22111 1 1111123444558888888888874 4557999999999886
Q ss_pred ceeEEeecCcccccC
Q 026886 80 EVDAFGIGTYLVTCY 94 (231)
Q Consensus 80 ~id~fGVGT~Lvt~~ 94 (231)
+|.+=||+..++++
T Consensus 177 -vd~lqIgAr~~~N~ 190 (335)
T PRK08673 177 -VDILQIGARNMQNF 190 (335)
T ss_pred -CCeEEECcccccCH
Confidence 79999999998864
No 240
>cd01453 vWA_transcription_factor_IIH_type Transcription factors IIH type: TFIIH is a multiprotein complex that is one of the five general transcription factors that binds RNA polymerase II holoenzyme. Orthologues of these genes are found in all completed eukaryotic genomes and all these proteins contain a VWA domain. The p44 subunit of TFIIH functions as a DNA helicase in RNA polymerase II transcription initiation and DNA repair, and its transcriptional activity is dependent on its C-terminal Zn-binding domains. The function of the vWA domain is unclear, but may be involved in complex assembly. The MIDAS motif is not conserved in this sub-group.
Probab=27.45 E-value=1.9e+02 Score=24.30 Aligned_cols=34 Identities=26% Similarity=0.304 Sum_probs=22.9
Q ss_pred CCeEEEEeCCCCH------HHHHHHHhcCCceeEEeecCc
Q 026886 56 EKMSITASNDLNE------ETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 56 ~~v~Iv~S~~Lde------~~I~~L~~~ga~id~fGVGT~ 89 (231)
.++-|++|++-|. +.++.+.+.|..+...|+|+.
T Consensus 108 ~~iiil~sd~~~~~~~~~~~~~~~l~~~~I~v~~IgiG~~ 147 (183)
T cd01453 108 REVLIIFSSLSTCDPGNIYETIDKLKKENIRVSVIGLSAE 147 (183)
T ss_pred eEEEEEEcCCCcCChhhHHHHHHHHHHcCcEEEEEEechH
Confidence 3456666654432 345567778999999999964
No 241
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=26.97 E-value=1.5e+02 Score=29.69 Aligned_cols=57 Identities=18% Similarity=0.179 Sum_probs=40.0
Q ss_pred ChHHHHHHHHHHHHHHHH-hhCCCCCCCeEEEEeCCCCHHHHHHHHhcC---------------CceeEEeecCc
Q 026886 31 DLAYLSCEARKFFRTIEK-EFGVPDFEKMSITASNDLNEETLDALNKQG---------------HEVDAFGIGTY 89 (231)
Q Consensus 31 Dl~~ls~~~R~~ld~~~~-~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~g---------------a~id~fGVGT~ 89 (231)
+......++|+.|+++-+ .+. .-..+-+++|||||=-.|..+.++- .++.+|-||..
T Consensus 204 ~~~~~~~~lr~~L~~aV~~rl~--sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~ 276 (554)
T PRK09431 204 DNVTDKNELRDALEAAVKKRLM--SDVPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLE 276 (554)
T ss_pred CHHHHHHHHHHHHHHHHHHHhc--CCCceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCC
Confidence 344556778888887644 232 2256789999999999999886542 24778888864
No 242
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=26.93 E-value=2.2e+02 Score=22.45 Aligned_cols=35 Identities=17% Similarity=0.129 Sum_probs=15.6
Q ss_pred HHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHH
Q 026886 9 CAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFF 43 (231)
Q Consensus 9 i~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~l 43 (231)
-.++..|++.|.+.....+=.=|...+...+.+++
T Consensus 22 ~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~i~~~~ 56 (133)
T cd00758 22 PALEALLEDLGCEVIYAGVVPDDADSIRAALIEAS 56 (133)
T ss_pred HHHHHHHHHCCCEEEEeeecCCCHHHHHHHHHHHH
Confidence 33444455555554444333334444444444443
No 243
>cd07373 2A5CPDO_A The alpha subunit of the Class III extradiol dioxygenase, 2-amino-5-chlorophenol 1,6-dioxygenase, which catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol. 2-amino-5-chlorophenol 1,6-dioxygenase (2A5CPDO) catalyzes the oxidization and subsequent ring-opening of 2-amino-5-chlorophenol, which is an intermediate during p-chloronitrobenzene degradation. This enzyme is a member of the class III extradiol dioxygenase family, a group of enzymes which use a non-heme Fe(II) to cleave aromatic rings between a hydroxylated carbon and an adjacent non-hydroxylated carbon. The active enzyme is probably a heterotetramer, composed of two alpha and two beta subunits. The alpha and beta subunits share significant sequence similarity and may have evolved by gene duplication. This model describes the alpha subunit, which does not contain a potential metal binding site and may not possess catalytic activity.
Probab=26.86 E-value=1.8e+02 Score=26.25 Aligned_cols=25 Identities=28% Similarity=0.407 Sum_probs=13.9
Q ss_pred HHHHHHHHHhcCCCccEE-----EeCCCCh
Q 026886 8 FCAVALALNDLGYKAVGI-----RLDSGDL 32 (231)
Q Consensus 8 ai~Va~~L~~~g~~~~GV-----RlDSGDl 32 (231)
|-+++.++.+.|....++ ++|=|-.
T Consensus 93 A~~i~~~~~~~gi~~~~~~~~~~~lDHG~~ 122 (271)
T cd07373 93 AEACVTACPEHGVHARGVDYDGFPIDTGTI 122 (271)
T ss_pred HHHHHHHHHHCCCcEEEecCCCCCCcchhH
Confidence 344555566667665544 4666643
No 244
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=26.86 E-value=3.3e+02 Score=23.43 Aligned_cols=63 Identities=14% Similarity=0.151 Sum_probs=37.2
Q ss_pred HHHHhcCCCccEEEeCC-CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC--CHHHHHHHHhcCCceeEEe
Q 026886 13 LALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL--NEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 13 ~~L~~~g~~~~GVRlDS-GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L--de~~I~~L~~~ga~id~fG 85 (231)
.++++.|+.+.= ..++ ++...+.+.+..++.. + .+.-|+++.+. +.+.+..+.+.|.|+-.|+
T Consensus 23 ~~a~~~g~~~~~-~~~~~~~~~~~~~~l~~~~~~--------~-~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~ 88 (294)
T cd06316 23 DEFAKLGIEVVA-TTDAQFDPAKQVADIETTISQ--------K-PDIIISIPVDPVSTAAAYKKVAEAGIKLVFMD 88 (294)
T ss_pred HHHHHcCCEEEE-ecCCCCCHHHHHHHHHHHHHh--------C-CCEEEEcCCCchhhhHHHHHHHHcCCcEEEec
Confidence 456777877642 2344 5665555555555543 2 33346655543 3567888888888866654
No 245
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=26.78 E-value=1.3e+02 Score=28.76 Aligned_cols=53 Identities=15% Similarity=0.152 Sum_probs=38.0
Q ss_pred CCCCeEEEEeCCCC-HHHHHHHHhcCCceeEEeecCcccccCCCCcceeEEEEeEE
Q 026886 54 DFEKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEI 108 (231)
Q Consensus 54 g~~~v~Iv~S~~Ld-e~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~l~~VyKLve~ 108 (231)
+-..+.|+++|++. -..|..-...| .|+..+||.++.....|--|+-+-....
T Consensus 252 g~r~vpVIAdGGI~tg~di~kAlAlG--AdaV~iGt~~a~a~Eapg~~~~w~~~~~ 305 (369)
T TIGR01304 252 GGRYVHVIADGGIETSGDLVKAIACG--ADAVVLGSPLARAAEAPGRGYFWPAAAA 305 (369)
T ss_pred CCCCceEEEeCCCCCHHHHHHHHHcC--CCEeeeHHHHHhhhcCCCCCCccchhhc
Confidence 33468999999984 45555555668 5799999999998777766655544433
No 246
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.64 E-value=4.5e+02 Score=25.68 Aligned_cols=39 Identities=15% Similarity=0.193 Sum_probs=31.6
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccccCCCC
Q 026886 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQA 97 (231)
Q Consensus 57 ~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt~~~~p 97 (231)
++.|++.|++ +...|..-...| .++..||+.++.+...|
T Consensus 256 ~vpVIAdGGI~~~~Di~KALalG--A~aVmvGs~~agt~Esp 295 (404)
T PRK06843 256 NICIIADGGIRFSGDVVKAIAAG--ADSVMIGNLFAGTKESP 295 (404)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC--CCEEEEcceeeeeecCC
Confidence 3689999999 677787777888 46888999998876665
No 247
>COG1080 PtsA Phosphoenolpyruvate-protein kinase (PTS system EI component in bacteria) [Carbohydrate transport and metabolism]
Probab=26.52 E-value=98 Score=31.65 Aligned_cols=36 Identities=11% Similarity=0.081 Sum_probs=26.2
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHH
Q 026886 33 AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALN 75 (231)
Q Consensus 33 ~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~ 75 (231)
.-+-.++|.+|+.. .+.+++|+|--=.+.+.|+.++
T Consensus 369 ~if~tQLRAilRAS-------~~G~l~IM~PMI~~~~Ei~~~k 404 (574)
T COG1080 369 EIFRTQLRAILRAS-------AHGNLRIMFPMIASLEEIRWAK 404 (574)
T ss_pred HHHHHHHHHHHHhh-------ccCCeEEEEeccccHHHHHHHH
Confidence 44555688888887 8889999998766666665544
No 248
>smart00729 Elp3 Elongator protein 3, MiaB family, Radical SAM. This superfamily contains MoaA, NifB, PqqE, coproporphyrinogen III oxidase, biotin synthase and MiaB families, and includes a representative in the eukaryotic elongator subunit, Elp-3. Some members of the family are methyltransferases.
Probab=26.46 E-value=3.3e+02 Score=21.53 Aligned_cols=72 Identities=24% Similarity=0.334 Sum_probs=40.7
Q ss_pred HHHHHHHHHhcCCC---ccEEEeCCCChHHHHH-HHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCC
Q 026886 8 FCAVALALNDLGYK---AVGIRLDSGDLAYLSC-EARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGH 79 (231)
Q Consensus 8 ai~Va~~L~~~g~~---~~GVRlDSGDl~~ls~-~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga 79 (231)
..+.++++.+.|.+ ...+-+=+|.+..... .+.++++.+.+.........+.+..+ +.+|++.+.+|.+.|.
T Consensus 35 i~~~~~~~~~~~~~~~~~~~i~~~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tn~~~~~~~~~~~l~~~~~ 111 (216)
T smart00729 35 LVREIELLAEKGEKEILVGTVFIGGGTPTLLSPEQLEELLEAIREILGLADDVEITIETRPGTLTEELLEALKEAGV 111 (216)
T ss_pred HHHHHHHHHhcccCCcceeEEEECCCCCCCCCHHHHHHHHHHHHHhCCCCCCeEEEEEeCcccCCHHHHHHHHHcCC
Confidence 34445555444433 2455666776554443 36666666655443221233444444 3589999999999874
No 249
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=26.40 E-value=1.1e+02 Score=26.56 Aligned_cols=24 Identities=21% Similarity=0.210 Sum_probs=19.1
Q ss_pred HHHHHHHhcCCceeEEeecCcccc
Q 026886 69 ETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 69 ~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
+.+++|.+.|..++..|+|+.-.+
T Consensus 127 ~~~~~lkk~~I~v~vI~~G~~~~~ 150 (187)
T cd01452 127 KLAKRLKKNNVSVDIINFGEIDDN 150 (187)
T ss_pred HHHHHHHHcCCeEEEEEeCCCCCC
Confidence 344778888999999999998444
No 250
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=26.40 E-value=3.9e+02 Score=23.54 Aligned_cols=27 Identities=11% Similarity=0.145 Sum_probs=13.4
Q ss_pred EEEEeCCCCHHHHHHHHh-cCCceeEEe
Q 026886 59 SITASNDLNEETLDALNK-QGHEVDAFG 85 (231)
Q Consensus 59 ~Iv~S~~Lde~~I~~L~~-~ga~id~fG 85 (231)
-|++....+++.+..+.+ .+.|+-.++
T Consensus 119 iii~~~~~~~~~~~~l~~~~~iPvV~~d 146 (341)
T PRK10703 119 LLVMCSEYPEPLLAMLEEYRHIPMVVMD 146 (341)
T ss_pred EEEecCCCCHHHHHHHHhcCCCCEEEEe
Confidence 344344445555555555 455554444
No 251
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=26.34 E-value=1.7e+02 Score=26.44 Aligned_cols=47 Identities=15% Similarity=0.170 Sum_probs=0.0
Q ss_pred Ee-CCC-ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCce
Q 026886 26 RL-DSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (231)
Q Consensus 26 Rl-DSG-Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~i 81 (231)
|+ |.| |...+.++++++++. . .+++|++..==+.+-+.+....|+.+
T Consensus 147 R~dd~g~D~~~~i~~i~~i~~~--------~-~~tkILaAS~R~~~~v~~a~~~Gad~ 195 (236)
T TIGR02134 147 RIADTGVDPEPHMREALEIVAQ--------K-PGVELLWASPRELFNIIQADRIGCDI 195 (236)
T ss_pred hhhhcCCCcHHHHHHHHHHHHh--------C-CCcEEEEEccCCHHHHHHHHHcCCCE
No 252
>PRK12595 bifunctional 3-deoxy-7-phosphoheptulonate synthase/chorismate mutase; Reviewed
Probab=26.17 E-value=2.3e+02 Score=26.93 Aligned_cols=79 Identities=27% Similarity=0.335 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCCCcc-EE----EeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026886 6 PNFCAVALALNDLGYKAV-GI----RLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~-GV----RlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~ 80 (231)
..++++|++|.+.|.++. |- |.--.+..-+..+--++|.+++.++|++. +|.-.|++.+..+.+.
T Consensus 132 ~~~~~~A~~lk~~g~~~~r~~~~kpRtsp~~f~g~~~e~l~~L~~~~~~~Gl~~-------~t~v~d~~~~~~l~~~--- 201 (360)
T PRK12595 132 EQVEAVAKALKAKGLKLLRGGAFKPRTSPYDFQGLGVEGLKILKQVADEYGLAV-------ISEIVNPADVEVALDY--- 201 (360)
T ss_pred HHHHHHHHHHHHcCCcEEEccccCCCCCCccccCCCHHHHHHHHHHHHHcCCCE-------EEeeCCHHHHHHHHHh---
Confidence 467889999998874321 11 11111112223344456677777788774 4557999999999886
Q ss_pred eeEEeecCcccccC
Q 026886 81 VDAFGIGTYLVTCY 94 (231)
Q Consensus 81 id~fGVGT~Lvt~~ 94 (231)
+|.+=||+...+..
T Consensus 202 vd~lkI~s~~~~n~ 215 (360)
T PRK12595 202 VDVIQIGARNMQNF 215 (360)
T ss_pred CCeEEECcccccCH
Confidence 89999999998863
No 253
>cd01461 vWA_interalpha_trypsin_inhibitor vWA_interalpha trypsin inhibitor (ITI): ITI is a glycoprotein composed of three polypeptides- two heavy chains and one light chain (bikunin). Bikunin confers the protease-inhibitor function while the heavy chains are involved in rendering stability to the extracellular matrix by binding to hyaluronic acid. The heavy chains carry the VWA domain with a conserved MIDAS motif. Although the exact role of the VWA domains remains unknown, it has been speculated to be involved in mediating protein-protein interactions with the components of the extracellular matrix.
Probab=26.16 E-value=2.5e+02 Score=22.02 Aligned_cols=37 Identities=16% Similarity=0.202 Sum_probs=23.9
Q ss_pred CCCCCeEEEEeCCCCH--HHH-HHHH---hcCCceeEEeecCc
Q 026886 53 PDFEKMSITASNDLNE--ETL-DALN---KQGHEVDAFGIGTY 89 (231)
Q Consensus 53 ~g~~~v~Iv~S~~Lde--~~I-~~L~---~~ga~id~fGVGT~ 89 (231)
++..+.-|++|+|... ..+ ..+. +.+.++-.+|+|+.
T Consensus 97 ~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~i~i~~i~~g~~ 139 (171)
T cd01461 97 PGSVPQIILLTDGEVTNESQILKNVREALSGRIRLFTFGIGSD 139 (171)
T ss_pred CCCccEEEEEeCCCCCCHHHHHHHHHHhcCCCceEEEEEeCCc
Confidence 3567889999998842 223 2222 23677888888863
No 254
>PRK12376 putative translaldolase; Provisional
Probab=26.13 E-value=1.7e+02 Score=26.36 Aligned_cols=46 Identities=17% Similarity=0.200 Sum_probs=38.4
Q ss_pred Ee-CCC-ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026886 26 RL-DSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (231)
Q Consensus 26 Rl-DSG-Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~ 80 (231)
|+ |+| |...+.++++++++. . .+++|++..==+.+.+.+....|+.
T Consensus 147 R~dd~g~D~~~~i~~i~~i~~~--------~-~~tkILaASiR~~~~v~~a~~~Gad 194 (236)
T PRK12376 147 RIADTGVDPVPLMKEALAICHS--------K-PGVELLWASPREVYNIIQADQLGCD 194 (236)
T ss_pred hhhhcCCCcHHHHHHHHHHHHh--------C-CCcEEEEEecCCHHHHHHHHHcCCC
Confidence 77 665 889999999999986 3 4679999999999999999888753
No 255
>PRK12755 phospho-2-dehydro-3-deoxyheptonate aldolase; Provisional
Probab=26.12 E-value=1.4e+02 Score=28.72 Aligned_cols=55 Identities=22% Similarity=0.121 Sum_probs=40.1
Q ss_pred CCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccccC
Q 026886 29 SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 29 SGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt~~ 94 (231)
|+|+..=-+.+|++|-+ ..++|+|-.+ -=||......+.+. ++..-||.+.+.++
T Consensus 117 s~~i~~GL~~~R~ll~~-~~e~Glp~at-------E~ld~~~~~y~~Dl---vs~~aIGARt~esq 171 (353)
T PRK12755 117 SFDIEEGLRIARKLLLD-LVELGLPLAT-------EALDPISPQYLGDL---ISWGAIGARTTESQ 171 (353)
T ss_pred cccHHHHHHHHHHHHHH-HHHhCCCEEE-------EecCcccHHHHHhh---hhheeeccchhcCH
Confidence 67777777778999877 5668877444 35677777666665 66778999988765
No 256
>TIGR00272 DPH2 diphthamide biosynthesis protein 2. This protein has been shown in Saccharomyces cerevisiae to be one of several required for the modification of a particular histidine residue of translation elongation factor 2 to diphthamide. This modified site can then become the target for ADP-ribosylation by diphtheria toxin.
Probab=26.04 E-value=88 Score=31.17 Aligned_cols=53 Identities=19% Similarity=0.228 Sum_probs=39.9
Q ss_pred CccEEEeCCC---ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 21 KAVGIRLDSG---DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 21 ~~~GVRlDSG---Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
+-.||=+-|= .=..+.+++++++.++ |.+. -+++.|-+|..+++.|.+ ||+|=
T Consensus 282 ~~~GIlVgTL~~q~~~~ii~~l~~li~~~-------GkK~-yl~~vgkinpaKLaNF~e----ID~fV 337 (496)
T TIGR00272 282 GCIGIVVGTLGVRNTRETINELRKMIKTA-------GKKH-YLFVVGKPNPAKLANFED----IDIFV 337 (496)
T ss_pred CEEEEEEecCccCCCHHHHHHHHHHHHHc-------CCcE-EEEEeCCCCHHHHhCCCC----CCEEE
Confidence 4567776652 2255677889999988 7666 899999999999988753 78883
No 257
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=25.97 E-value=3.5e+02 Score=22.79 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=36.2
Q ss_pred HHHHHhcCCCccEEEeCC-CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC--HHHHHHHHhcCCceeEEe
Q 026886 12 ALALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (231)
Q Consensus 12 a~~L~~~g~~~~GVRlDS-GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Ld--e~~I~~L~~~ga~id~fG 85 (231)
..++++.|+.+. ..++ +|.....+.++.+... + -+.-|+.+.+.+ .+.+..+.+.|.|+-.++
T Consensus 22 ~~~~~~~g~~v~--~~~~~~~~~~~~~~i~~~~~~--------~-~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~ 87 (282)
T cd06318 22 KAHAKALGYELI--STDAQGDLTKQIADVEDLLTR--------G-VNVLIINPVDPEGLVPAVAAAKAAGVPVVVVD 87 (282)
T ss_pred HHHHHHcCCEEE--EEcCCCCHHHHHHHHHHHHHc--------C-CCEEEEecCCccchHHHHHHHHHCCCCEEEec
Confidence 345667788764 3455 4665554445554432 2 333455544434 356788888888877664
No 258
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=25.96 E-value=3.8e+02 Score=22.59 Aligned_cols=62 Identities=16% Similarity=0.080 Sum_probs=34.8
Q ss_pred HHHHhcCCCccEEEeCC-CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC--HHHHHHHHhcCCceeEEe
Q 026886 13 LALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (231)
Q Consensus 13 ~~L~~~g~~~~GVRlDS-GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Ld--e~~I~~L~~~ga~id~fG 85 (231)
+++++.|+.+.= .++ +|.....+.++.++.. + -+.-|+.+.+.+ ...+..+.+.+.|+-.++
T Consensus 23 ~~a~~~g~~~~~--~~~~~~~~~~~~~i~~l~~~--------~-vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~ 87 (273)
T cd06309 23 DAAEKRGFDLKF--ADAQQKQENQISAIRSFIAQ--------G-VDVIILAPVVETGWDPVLKEAKAAGIPVILVD 87 (273)
T ss_pred HHHHhcCCEEEE--eCCCCCHHHHHHHHHHHHHc--------C-CCEEEEcCCccccchHHHHHHHHCCCCEEEEe
Confidence 345667877653 343 3555554445554443 2 232455555555 466788888887765554
No 259
>PRK13347 coproporphyrinogen III oxidase; Provisional
Probab=25.79 E-value=3.7e+02 Score=25.97 Aligned_cols=67 Identities=15% Similarity=0.342 Sum_probs=45.0
Q ss_pred cEEEeCCCChHHH-HHHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCceeEEeecCc
Q 026886 23 VGIRLDSGDLAYL-SCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 23 ~GVRlDSGDl~~l-s~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~id~fGVGT~ 89 (231)
.-|=+--|.+..+ ...+.++++.+.+.|++..-..+.|-+. +.+|++.+..|.+.|...-++||=|.
T Consensus 105 ~~i~fgGGTPs~l~~~~l~~ll~~i~~~~~~~~~~e~tie~~p~~lt~e~l~~L~~~G~~rvsiGvQS~ 173 (453)
T PRK13347 105 SQLHWGGGTPTILNPDQFERLMAALRDAFDFAPEAEIAVEIDPRTVTAEMLQALAALGFNRASFGVQDF 173 (453)
T ss_pred EEEEEcCcccccCCHHHHHHHHHHHHHhCCCCCCceEEEEeccccCCHHHHHHHHHcCCCEEEECCCCC
Confidence 3444445666655 4557788888777777653334444433 57999999999999976667776543
No 260
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=25.78 E-value=85 Score=21.30 Aligned_cols=19 Identities=26% Similarity=0.366 Sum_probs=15.6
Q ss_pred hHHHHHHHHHHHHHHHHhh
Q 026886 32 LAYLSCEARKFFRTIEKEF 50 (231)
Q Consensus 32 l~~ls~~~R~~ld~~~~~l 50 (231)
-.+||+++|+.++.+..++
T Consensus 19 ESELskr~rrLIRaa~k~l 37 (44)
T PF08134_consen 19 ESELSKRIRRLIRAARKQL 37 (44)
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 3689999999999986654
No 261
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=25.52 E-value=3.4e+02 Score=23.75 Aligned_cols=38 Identities=21% Similarity=0.254 Sum_probs=16.7
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCC--ceeEEeecCccc
Q 026886 54 DFEKMSITASNDLNEETLDALNKQGH--EVDAFGIGTYLV 91 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde~~I~~L~~~ga--~id~fGVGT~Lv 91 (231)
|++-+-|.+++.--.+.|+.|.++.. |--..|.||=+.
T Consensus 38 Gi~~iEit~~~~~a~~~i~~l~~~~~~~p~~~vGaGTV~~ 77 (213)
T PRK06552 38 GIKAIEVTYTNPFASEVIKELVELYKDDPEVLIGAGTVLD 77 (213)
T ss_pred CCCEEEEECCCccHHHHHHHHHHHcCCCCCeEEeeeeCCC
Confidence 44555555544444444444443321 122355555443
No 262
>PRK06223 malate dehydrogenase; Reviewed
Probab=25.40 E-value=1.7e+02 Score=26.31 Aligned_cols=39 Identities=21% Similarity=0.300 Sum_probs=23.7
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCC-ceeEEeecCcccc
Q 026886 54 DFEKMSITASNDLNEETLDALNKQGH-EVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde~~I~~L~~~ga-~id~fGVGT~Lvt 92 (231)
..+.+.|++||-.|.-.-.-.+..|. +...||+||.|-+
T Consensus 110 ~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~lds 149 (307)
T PRK06223 110 APDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLDS 149 (307)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcHH
Confidence 44556777777766555444443343 2567888877754
No 263
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=25.24 E-value=1.6e+02 Score=26.18 Aligned_cols=72 Identities=13% Similarity=0.012 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCC-c-----cEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCC
Q 026886 7 NFCAVALALNDLGYK-A-----VGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGH 79 (231)
Q Consensus 7 nai~Va~~L~~~g~~-~-----~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~~I~~L~~~ga 79 (231)
+.+.+|+.+.+.|.+ + .+..-.+|.-..+.++ +.+. ..+.+.++||+ +.+.+.++.+.|
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~---i~~~----------~~~pv~~gGGi~s~~d~~~l~~~G- 96 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIEN---LASE----------CFMPLCYGGGIKTLEQAKKIFSLG- 96 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHH---HHHh----------CCCCEEECCCCCCHHHHHHHHHCC-
Confidence 778899999888843 2 2333334433333322 2222 23578999999 888898888877
Q ss_pred ceeEEeecCccccc
Q 026886 80 EVDAFGIGTYLVTC 93 (231)
Q Consensus 80 ~id~fGVGT~Lvt~ 93 (231)
++..=|||.+.++
T Consensus 97 -~~~vvigs~~~~~ 109 (258)
T PRK01033 97 -VEKVSINTAALED 109 (258)
T ss_pred -CCEEEEChHHhcC
Confidence 4556678877664
No 264
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=25.09 E-value=2.1e+02 Score=25.72 Aligned_cols=52 Identities=23% Similarity=0.310 Sum_probs=37.9
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccc
Q 026886 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLV 91 (231)
Q Consensus 35 ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lv 91 (231)
..+.+|+.+.+. ++- --.+++|+.=|+.+.+-+.+|.+++ .+|++.||..-.
T Consensus 181 v~~~ir~~l~~~---~~~-~~~~~~IlYGGSV~~~N~~~l~~~~-~vDG~LVG~Asl 232 (242)
T cd00311 181 VHAFIRKLLAEL---YGE-VAEKVRILYGGSVNPENAAELLAQP-DIDGVLVGGASL 232 (242)
T ss_pred HHHHHHHHHHHh---ccc-ccCceeEEECCCCCHHHHHHHhcCC-CCCEEEeehHhh
Confidence 334456665543 222 2357899999999999999999886 489999997643
No 265
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=25.02 E-value=2e+02 Score=25.27 Aligned_cols=72 Identities=19% Similarity=0.155 Sum_probs=46.9
Q ss_pred HHHHHHHHHHhcCCC------ccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCC
Q 026886 7 NFCAVALALNDLGYK------AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGH 79 (231)
Q Consensus 7 nai~Va~~L~~~g~~------~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~~I~~L~~~ga 79 (231)
+.+.+|+.+.+.|.+ +.|.. ..++-..+. +++.++ ..+.+.+.||+ +.+.++.+.+.|+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~-g~~~n~~~i---~~i~~~----------~~~pv~vgGGirs~edv~~~l~~Ga 98 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAF-GRGSNRELL---AEVVGK----------LDVKVELSGGIRDDESLEAALATGC 98 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccC-CCCccHHHH---HHHHHH----------cCCCEEEcCCCCCHHHHHHHHHCCC
Confidence 677888888888854 23433 333323333 223222 12477888888 5788899998885
Q ss_pred ceeEEeecCcccccC
Q 026886 80 EVDAFGIGTYLVTCY 94 (231)
Q Consensus 80 ~id~fGVGT~Lvt~~ 94 (231)
+..++||.+.++.
T Consensus 99 --~kvviGs~~l~~p 111 (241)
T PRK14024 99 --ARVNIGTAALENP 111 (241)
T ss_pred --CEEEECchHhCCH
Confidence 5779999998863
No 266
>cd01470 vWA_complement_factors Complement factors B and C2 are two critical proteases for complement activation. They both contain three CCP or Sushi domains, a trypsin-type serine protease domain and a single VWA domain with a conserved metal ion dependent adhesion site referred commonly as the MIDAS motif. Orthologues of these molecules are found from echinoderms to chordates. During complement activation, the CCP domains are cleaved off, resulting in the formation of an active protease that cleaves and activates complement C3. Complement C2 is in the classical pathway and complement B is in the alternative pathway. The interaction of C2 with C4 and of factor B with C3b are both dependent on Mg2+ binding sites within the VWA domains and the VWA domain of factor B has been shown to mediate the binding of C3. This is consistent with the common inferred function of VWA domains as magnesium-dependent protein interaction domains.
Probab=24.57 E-value=2.3e+02 Score=23.45 Aligned_cols=35 Identities=17% Similarity=0.263 Sum_probs=22.7
Q ss_pred CCCeEEEEeCCCC---------HHHHHHHH----------hcCCceeEEeecCc
Q 026886 55 FEKMSITASNDLN---------EETLDALN----------KQGHEVDAFGIGTY 89 (231)
Q Consensus 55 ~~~v~Iv~S~~Ld---------e~~I~~L~----------~~ga~id~fGVGT~ 89 (231)
..++-|++|+|-+ .+.++++. +.+..|-++|||..
T Consensus 112 ~~~~iillTDG~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~v~i~~iGvG~~ 165 (198)
T cd01470 112 TRHVIILFTDGKSNMGGSPLPTVDKIKNLVYKNNKSDNPREDYLDVYVFGVGDD 165 (198)
T ss_pred cceEEEEEcCCCcCCCCChhHHHHHHHHHHhcccccccchhcceeEEEEecCcc
Confidence 4677899999864 22344432 22567888999864
No 267
>TIGR03551 F420_cofH 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, CofH subunit. This enzyme, together with CofG, complete the biosynthesis of 7,8-didemethyl-8-hydroxy-5-deazariboflavin synthase, the chromophore of coenzyme F420. The chromophore is also used in cyanobacteria DNA photolyases.
Probab=24.49 E-value=2.7e+02 Score=25.75 Aligned_cols=68 Identities=22% Similarity=0.200 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCCChHHH-HHHHHHHHHHHHHhhCCCCCCCeEEEE------------eCCCCHHHH
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYL-SCEARKFFRTIEKEFGVPDFEKMSITA------------SNDLNEETL 71 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSGDl~~l-s~~~R~~ld~~~~~l~i~g~~~v~Iv~------------S~~Lde~~I 71 (231)
....++.++++.+.|. .-|.+-+|+...+ -.++.++++..+++ +.++.+.+ .|-++++.+
T Consensus 72 ~eeI~e~~~~~~~~G~--~~i~l~gG~~p~~~~~~~~~i~~~Ik~~-----~~~i~~~~~t~~ei~~~~~~~g~~~~e~l 144 (343)
T TIGR03551 72 LEEIAERAAEAWKAGA--TEVCIQGGIHPDLDGDFYLDILRAVKEE-----VPGMHIHAFSPMEVYYGARNSGLSVEEAL 144 (343)
T ss_pred HHHHHHHHHHHHHCCC--CEEEEEeCCCCCCCHHHHHHHHHHHHHH-----CCCceEEecCHHHHHHHHHHcCCCHHHHH
Confidence 4567778888887774 4577767732211 12234445444432 23344443 356789999
Q ss_pred HHHHhcCC
Q 026886 72 DALNKQGH 79 (231)
Q Consensus 72 ~~L~~~ga 79 (231)
+.|.+.|.
T Consensus 145 ~~LkeAGl 152 (343)
T TIGR03551 145 KRLKEAGL 152 (343)
T ss_pred HHHHHhCc
Confidence 99999884
No 268
>TIGR00322 diphth2_R diphthamide biosynthesis protein 2-related domain. Because archaeal species are known to have the diphthamide modification to the conserved His of archaeal and eukaryotic EF-2, it may be that the lone homolog of YKL191W in M. jannaschii, A. fulgidus, and M. thermoautotrophicum is orthologous. However, each of these is considerably shorter than YKL191W and seems more closely related to the uncharacterized protein YIL103W than to YKL191W.
Probab=24.46 E-value=1e+02 Score=28.91 Aligned_cols=51 Identities=18% Similarity=0.214 Sum_probs=33.9
Q ss_pred ccEEEeCCC---ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEE
Q 026886 22 AVGIRLDSG---DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 22 ~~GVRlDSG---Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~f 84 (231)
-.||=+-|= .=..+.+++++++.++ |.+. -+++.|.+|++++..|.+ ||+|
T Consensus 234 ~vGIlvgTl~~q~~~~~~~~l~~ll~~~-------gkk~-y~i~~~~in~~kL~nf~e----iD~f 287 (332)
T TIGR00322 234 KFGVVLSSKGGQGRLRLAKNLKKNLEEA-------GKTV-LIILLSNVSPAKLLMFDQ----IDVF 287 (332)
T ss_pred EEEEEEecCccCCCHHHHHHHHHHHHHc-------CCcE-EEEEeCCCCHHHHhCCCC----cCEE
Confidence 456655542 1244666777777776 6544 888888899988877643 7777
No 269
>PRK14567 triosephosphate isomerase; Provisional
Probab=24.42 E-value=2.8e+02 Score=25.27 Aligned_cols=35 Identities=20% Similarity=0.202 Sum_probs=30.4
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccc
Q 026886 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLV 91 (231)
Q Consensus 56 ~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lv 91 (231)
.+++|+.=|+.+++-+.+|.+++ .+|++-||..-.
T Consensus 201 ~~v~IlYGGSV~~~N~~~l~~~~-diDG~LVGgasL 235 (253)
T PRK14567 201 KNIKIVYGGSLKAENAKDILSLP-DVDGGLIGGASL 235 (253)
T ss_pred ccceEEEcCcCCHHHHHHHHcCC-CCCEEEeehhhh
Confidence 57899999999999999998874 389999997654
No 270
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=24.31 E-value=4e+02 Score=21.87 Aligned_cols=51 Identities=14% Similarity=0.120 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC--CHHH----HHHHHhcCCceeEEeecCccc
Q 026886 33 AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL--NEET----LDALNKQGHEVDAFGIGTYLV 91 (231)
Q Consensus 33 ~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L--de~~----I~~L~~~ga~id~fGVGT~Lv 91 (231)
..+-+++.+.|++. |+.++.|++=|.+ -++. ..+|.+.|. --.||=||.+-
T Consensus 66 ~~~~~~~~~~l~~~-------gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv-~~vF~pgt~~~ 122 (134)
T TIGR01501 66 EIDCKGLRQKCDEA-------GLEGILLYVGGNLVVGKQDFPDVEKRFKEMGF-DRVFAPGTPPE 122 (134)
T ss_pred HHHHHHHHHHHHHC-------CCCCCEEEecCCcCcChhhhHHHHHHHHHcCC-CEEECcCCCHH
Confidence 44566677777776 7777676666653 2222 456888884 35899888663
No 271
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=24.23 E-value=3.7e+02 Score=21.83 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=34.6
Q ss_pred HHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEeec
Q 026886 15 LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 15 L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVG 87 (231)
+++.|+++. ++-+..|...+...++..... + -+.-|+...+-+...+..+.+.|.|+-.++..
T Consensus 25 ~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~--------~-~d~iii~~~~~~~~~~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 25 AREAGYSVL-LCNSDEDPEKEREALELLLSR--------R-VDGIILAPSRLDDELLEELAALGIPVVLVDRP 87 (264)
T ss_pred HHHcCCEEE-EEcCCCCHHHHHHHHHHHHHc--------C-cCEEEEecCCcchHHHHHHHHcCCCEEEeccc
Confidence 455677765 455556665555455554432 2 33344444433333377888888876666543
No 272
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=24.10 E-value=4.5e+02 Score=23.85 Aligned_cols=60 Identities=20% Similarity=0.203 Sum_probs=0.0
Q ss_pred HHHHHHHhcCCCccEEEeCCCCh------------HHHHHHHHHHHHHHHHhhCCCCCCCeEE--EEeCCCCHHHHHHHH
Q 026886 10 AVALALNDLGYKAVGIRLDSGDL------------AYLSCEARKFFRTIEKEFGVPDFEKMSI--TASNDLNEETLDALN 75 (231)
Q Consensus 10 ~Va~~L~~~g~~~~GVRlDSGDl------------~~ls~~~R~~ld~~~~~l~i~g~~~v~I--v~S~~Lde~~I~~L~ 75 (231)
..+.+|.+.|.....|=+||-+. .....+..+.+.++ |+..++| ++..+.|.+.+.++.
T Consensus 103 ~~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~~~-------G~~~v~in~vv~~g~n~~ei~~l~ 175 (334)
T TIGR02666 103 RHAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAALAA-------GLEPVKLNTVVMRGVNDDEIVDLA 175 (334)
T ss_pred HHHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHHHc-------CCCcEEEEEEEeCCCCHHHHHHHH
Q ss_pred h
Q 026886 76 K 76 (231)
Q Consensus 76 ~ 76 (231)
+
T Consensus 176 ~ 176 (334)
T TIGR02666 176 E 176 (334)
T ss_pred H
No 273
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=24.09 E-value=3.2e+02 Score=23.44 Aligned_cols=76 Identities=17% Similarity=0.130 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCCCccEEEeCCCCh---HHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCCce
Q 026886 6 PNFCAVALALNDLGYKAVGIRLDSGDL---AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEV 81 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~GVRlDSGDl---~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Ld-e~~I~~L~~~ga~i 81 (231)
.+.+.+++++.+.|.+..=+|-=++.. ......++++.++ ..+.+++.||++ .+.++.+.+.|+
T Consensus 32 ~~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~----------~~~~l~v~GGi~~~~~~~~~~~~Ga-- 99 (241)
T PRK13585 32 GDPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEA----------VGVPVQLGGGIRSAEDAASLLDLGV-- 99 (241)
T ss_pred CCHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHH----------cCCcEEEcCCcCCHHHHHHHHHcCC--
Confidence 367888888888898877777445422 2334445555544 235788888887 566777778785
Q ss_pred eEEeecCccccc
Q 026886 82 DAFGIGTYLVTC 93 (231)
Q Consensus 82 d~fGVGT~Lvt~ 93 (231)
|..=+||.+..+
T Consensus 100 ~~v~iGs~~~~~ 111 (241)
T PRK13585 100 DRVILGTAAVEN 111 (241)
T ss_pred CEEEEChHHhhC
Confidence 445578877653
No 274
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=24.05 E-value=2.4e+02 Score=26.02 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=29.9
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCceeEEeecCcccccCCC
Q 026886 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQ 96 (231)
Q Consensus 57 ~v~Iv~S~~Ld-e~~I~~L~~~ga~id~fGVGT~Lvt~~~~ 96 (231)
++.|+++||+. .+.+......| .|+.-+||.+..+...
T Consensus 161 ~iPviaaGGI~~~~~~~~al~~G--A~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 161 SIPVIAAGGIADGRGMAAAFALG--AEAVQMGTRFLCAKEC 199 (307)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCEeecchHHhccccc
Confidence 36799999995 45587777788 4799999999887644
No 275
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=23.86 E-value=4.8e+02 Score=22.56 Aligned_cols=66 Identities=20% Similarity=0.220 Sum_probs=35.3
Q ss_pred hHHHHHHHHHHHhcCCCccEEEeCCC----ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHH-------HH
Q 026886 5 VPNFCAVALALNDLGYKAVGIRLDSG----DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETL-------DA 73 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRlDSG----Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I-------~~ 73 (231)
|.+|+++|.+ .|- +=|...+| .-..-.+.+++...+ ..+| .+++|.+|||.+.+.. .+
T Consensus 148 I~~a~ria~e---~Ga--D~vKt~tg~~~~~t~~~~~~~~~~~~~----~~~p--~~~~Vk~sGGi~~~~~~~~l~~a~~ 216 (236)
T PF01791_consen 148 IARAARIAAE---LGA--DFVKTSTGKPVGATPEDVELMRKAVEA----APVP--GKVGVKASGGIDAEDFLRTLEDALE 216 (236)
T ss_dssp HHHHHHHHHH---TT---SEEEEE-SSSSCSHHHHHHHHHHHHHT----HSST--TTSEEEEESSSSHHHHHHSHHHHHH
T ss_pred HHHHHHHHHH---hCC--CEEEecCCccccccHHHHHHHHHHHHh----cCCC--cceEEEEeCCCChHHHHHHHHHHHH
Confidence 4555665554 454 44666666 211223334555544 3444 4678999999855543 44
Q ss_pred HHhcCCce
Q 026886 74 LNKQGHEV 81 (231)
Q Consensus 74 L~~~ga~i 81 (231)
+.+.|+.+
T Consensus 217 ~i~aGa~~ 224 (236)
T PF01791_consen 217 FIEAGADR 224 (236)
T ss_dssp HHHTTHSE
T ss_pred HHHcCChh
Confidence 44667644
No 276
>TIGR03275 methan_mark_8 putative methanogenesis marker protein 8. Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=23.77 E-value=2.7e+02 Score=25.75 Aligned_cols=62 Identities=18% Similarity=0.280 Sum_probs=44.6
Q ss_pred EEEeCCCCh-HHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhc-CCceeEEeecCccccc
Q 026886 24 GIRLDSGDL-AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQ-GHEVDAFGIGTYLVTC 93 (231)
Q Consensus 24 GVRlDSGDl-~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~-ga~id~fGVGT~Lvt~ 93 (231)
||=||..+- ..+..-++++++. ||+++-+-+++.=|..+|++|..+ |..+-.|||=|.-++.
T Consensus 139 GiVLd~~tA~IDq~~Gv~~Aie~--------Gyk~IaVTv~~~~~a~~iRe~e~~~~~~~~if~VHtTGis~ 202 (259)
T TIGR03275 139 GIVLDPDTATIDQIKGVEKAIEL--------GYKKIAVTVADAEDAKAIRELESESGIDIIIFAVHTTGIDR 202 (259)
T ss_pred CEEeCCccccccHHHHHHHHHHc--------CCceEEEEecCHHHHHHHHHhccccCCcEEEEEEECCCCCH
Confidence 777886532 2344557777776 999999999988888888888764 5567777777666543
No 277
>COG4937 Predicted regulatory domain of prephenate dehydrogenase [Translation, ribosomal structure and biogenesis]
Probab=23.72 E-value=2.2e+02 Score=24.53 Aligned_cols=76 Identities=17% Similarity=0.208 Sum_probs=52.4
Q ss_pred CCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhc---CC---ceeEEeecCccccc
Q 026886 20 YKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQ---GH---EVDAFGIGTYLVTC 93 (231)
Q Consensus 20 ~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~---ga---~id~fGVGT~Lvt~ 93 (231)
.++.-||+=|+| +|.+.=++.|+. -.-++..+|+.+.|++.|..+... -. .+|.| =||.+..+
T Consensus 59 fki~nvrvlse~--ELr~wk~e~L~~--------~v~DvSvlf~~~vDpEvil~avkllk~~vd~~I~DvY-~G~~i~ed 127 (171)
T COG4937 59 FKILNVRVLSED--ELRKWKKEHLEK--------KVIDVSVLFKKDVDPEVILNAVKLLKKMVDIEIIDVY-EGEKIEED 127 (171)
T ss_pred EEEeEEEEccHH--HHHHHHHHhhhe--------EEEEEEEEecCCCCHHHHHhHHHhhhheeEEEEEEee-cCCcCCCC
Confidence 456678888887 555555667766 567889999999999999985432 11 35666 57777554
Q ss_pred CCCCcceeEEEEeEEC
Q 026886 94 YAQAALGCVFKLVEIN 109 (231)
Q Consensus 94 ~~~p~l~~VyKLve~~ 109 (231)
..++++|.+.-.|
T Consensus 128 ---e~~siT~Ri~~f~ 140 (171)
T COG4937 128 ---EYKSITFRIYGFN 140 (171)
T ss_pred ---ceeeEEEEEEEeC
Confidence 2567777776655
No 278
>PF05913 DUF871: Bacterial protein of unknown function (DUF871); InterPro: IPR008589 This family consists of several conserved hypothetical proteins from bacteria and archaea. The function of this family is unknown though a number are annotated as outer surface proteins.; PDB: 2P0O_A 1X7F_A.
Probab=23.67 E-value=69 Score=30.52 Aligned_cols=44 Identities=30% Similarity=0.382 Sum_probs=24.3
Q ss_pred ccEEEeCCC-ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCCc
Q 026886 22 AVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHE 80 (231)
Q Consensus 22 ~~GVRlDSG-Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~~I~~L~~~ga~ 80 (231)
++|+|+|-| +..+.+ .+-. ..++|.+--+- +++.+.+|.++|+.
T Consensus 90 i~~lRlD~Gf~~~~ia-----~ls~----------ng~~I~LNASti~~~~l~~L~~~~~~ 135 (357)
T PF05913_consen 90 IDGLRLDYGFSGEEIA-----KLSK----------NGIKIELNASTITEEELDELIKYGAN 135 (357)
T ss_dssp -SEEEESSS-SCHHHH-----HHTT----------T-SEEEEETTT--CCHHHHHCCTT--
T ss_pred CCEEEECCCCCHHHHH-----HHHh----------CCCEEEEECCCCChHHHHHHHHhcCC
Confidence 579999998 322222 1110 12567776554 88888888887753
No 279
>cd00945 Aldolase_Class_I Class I aldolases. The class I aldolases use an active-site lysine which stablilzes a reaction intermediates via Schiff base formation, and have TIM beta/alpha barrel fold. The members of this family include 2-keto-3-deoxy-6-phosphogluconate (KDPG) and 2-keto-4-hydroxyglutarate (KHG) aldolases, transaldolase, dihydrodipicolinate synthase sub-family, Type I 3-dehydroquinate dehydratase, DeoC and DhnA proteins, and metal-independent fructose-1,6-bisphosphate aldolase. Although structurally similar, the class II aldolases use a different mechanism and are believed to have an independent evolutionary origin.
Probab=23.58 E-value=3.9e+02 Score=21.40 Aligned_cols=22 Identities=18% Similarity=0.261 Sum_probs=13.8
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcC
Q 026886 57 KMSITASNDLN-EETLDALNKQG 78 (231)
Q Consensus 57 ~v~Iv~S~~Ld-e~~I~~L~~~g 78 (231)
++.|++.++.+ .+.+.+....|
T Consensus 172 ~~~v~~~gg~~~~~~~~~~~~~G 194 (201)
T cd00945 172 RVGVKAAGGIKTLEDALAAIEAG 194 (201)
T ss_pred CCcEEEECCCCCHHHHHHHHHhc
Confidence 45677777777 44555555556
No 280
>COG0502 BioB Biotin synthase and related enzymes [Coenzyme metabolism]
Probab=23.54 E-value=2e+02 Score=27.38 Aligned_cols=73 Identities=25% Similarity=0.305 Sum_probs=44.2
Q ss_pred HHHHHHHHHHhcC-CCc---cEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCce
Q 026886 7 NFCAVALALNDLG-YKA---VGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEV 81 (231)
Q Consensus 7 nai~Va~~L~~~g-~~~---~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~i 81 (231)
..++-|+.+++.| .++ .+.|= .| +.-.++-++...++.++| +.+.+| |.||++.+++|.+.| +
T Consensus 88 eIle~Ak~ak~~Ga~r~c~~aagr~-~~---~~~~~i~~~v~~Vk~~~~------le~c~slG~l~~eq~~~L~~aG--v 155 (335)
T COG0502 88 EILEAAKKAKAAGATRFCMGAAGRG-PG---RDMEEVVEAIKAVKEELG------LEVCASLGMLTEEQAEKLADAG--V 155 (335)
T ss_pred HHHHHHHHHHHcCCceEEEEEeccC-CC---ccHHHHHHHHHHHHHhcC------cHHhhccCCCCHHHHHHHHHcC--h
Confidence 4667788888888 554 34554 43 223333333333333232 456666 789999999999998 4
Q ss_pred eEEeecCccccc
Q 026886 82 DAFGIGTYLVTC 93 (231)
Q Consensus 82 d~fGVGT~Lvt~ 93 (231)
|.| -.+|-|+
T Consensus 156 d~y--nhNLeTs 165 (335)
T COG0502 156 DRY--NHNLETS 165 (335)
T ss_pred hhe--ecccccC
Confidence 444 4556564
No 281
>PF00994 MoCF_biosynth: Probable molybdopterin binding domain; InterPro: IPR001453 Eukaryotic and prokaryotic molybdoenzymes require a molybdopterin cofactor (MoCF) for their activity. The biosynthesis of this cofactor involves a complex multistep enzymatic pathway. One of the eukaryotic proteins involved in this pathway is the Drosophila protein cinnamon [] which is highly similar to gephyrin, a rat microtubule-associated protein which was thought to anchor the glycine receptor to subsynaptic microtubules. Cinnamon and gephyrin are evolutionary related, in their N-terminal half, to the Escherichia coli MoCF biosynthesis proteins mog/chlG and moaB/chlA2 and, in their C-terminal half, to E. coli moeA/chlE.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 3TCR_B 1O8O_B 1O8Q_G 1EAV_D 1O8N_C 1UUX_A 1UUY_A 2G2C_A 2G4R_C 3K6A_F ....
Probab=23.24 E-value=1.9e+02 Score=22.97 Aligned_cols=49 Identities=14% Similarity=0.146 Sum_probs=30.7
Q ss_pred HHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC
Q 026886 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL 66 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L 66 (231)
|+..++..|++.|.+.....+=--|...+...+++.++++ + -|+.|||+
T Consensus 18 n~~~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~~~~~----------D-~VittGG~ 66 (144)
T PF00994_consen 18 NGPFLAALLEELGIEVIRYGIVPDDPDAIKEALRRALDRA----------D-LVITTGGT 66 (144)
T ss_dssp HHHHHHHHHHHTTEEEEEEEEEESSHHHHHHHHHHHHHTT----------S-EEEEESSS
T ss_pred HHHHHHHHHHHcCCeeeEEEEECCCHHHHHHHHHhhhccC----------C-EEEEcCCc
Confidence 5666677777777766544443346666766666666552 4 66777755
No 282
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=23.21 E-value=1.2e+02 Score=28.18 Aligned_cols=51 Identities=22% Similarity=0.354 Sum_probs=36.3
Q ss_pred CccEEEeCCC---ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEE
Q 026886 21 KAVGIRLDSG---DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 21 ~~~GVRlDSG---Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~f 84 (231)
+-.||=+.|= .=..+.+++++++.++ |.+. .+++.|.+|++++..| + +|.|
T Consensus 213 ~~vGIlvgTl~~q~~~~~~~~l~~ll~~~-------gkk~-y~i~~~~in~~kL~nf-~----iD~f 266 (308)
T TIGR03682 213 KKFGILVSTKKGQRRPELAEELKKLLEEL-------GKEA-LLILLDNISPDQLRNL-D----FDAY 266 (308)
T ss_pred CeEEEEEEccCcCCCHHHHHHHHHHHHHc-------CCeE-EEEEeCCCCHHHHhcC-C----cCEE
Confidence 4466666652 1244677788888887 7554 8889999999999877 2 7787
No 283
>PRK05904 coproporphyrinogen III oxidase; Provisional
Probab=23.18 E-value=4.5e+02 Score=24.62 Aligned_cols=67 Identities=15% Similarity=0.166 Sum_probs=46.0
Q ss_pred CCccEEEeCCCChHHHHH-HHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCceeEEeecC
Q 026886 20 YKAVGIRLDSGDLAYLSC-EARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 20 ~~~~GVRlDSGDl~~ls~-~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~id~fGVGT 88 (231)
.++.-|=+--|.+..|+. .+.++++.+++.+ +.-.++.|-+. +.++++.++.|.+.|...-++||=|
T Consensus 55 ~~~~tiy~GGGTPs~L~~~~l~~ll~~i~~~~--~~~~eitiE~nP~~lt~e~l~~lk~~G~nrisiGvQS 123 (353)
T PRK05904 55 KQFKTIYLGGGTPNCLNDQLLDILLSTIKPYV--DNNCEFTIECNPELITQSQINLLKKNKVNRISLGVQS 123 (353)
T ss_pred CCeEEEEECCCccccCCHHHHHHHHHHHHHhc--CCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEeccc
Confidence 344555566688877754 3677787776654 33356666665 5799999999999997666666643
No 284
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=23.17 E-value=4.3e+02 Score=22.07 Aligned_cols=63 Identities=17% Similarity=0.096 Sum_probs=36.6
Q ss_pred HHHHHhcCCCccEEEeCC-CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCC--CCHHHHHHHHhcCCceeEEe
Q 026886 12 ALALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASND--LNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 12 a~~L~~~g~~~~GVRlDS-GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~--Lde~~I~~L~~~ga~id~fG 85 (231)
..++++.|+.+.= .|| +|+......++.++.. +. +.-|+.+.+ ...+.+.++.+.|.|+-.++
T Consensus 22 ~~~~~~~g~~~~~--~~~~~~~~~~~~~l~~~~~~--------~v-dgii~~~~~~~~~~~~i~~~~~~~ipvV~~~ 87 (273)
T cd06305 22 KAEAEALGGDLRV--YDAGGDDAKQADQIDQAIAQ--------KV-DAIIIQHGRAEVLKPWVKRALDAGIPVVAFD 87 (273)
T ss_pred HHHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHc--------CC-CEEEEecCChhhhHHHHHHHHHcCCCEEEec
Confidence 4456777877543 455 4766665555555543 32 435554433 23456788888887765554
No 285
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=23.07 E-value=2.5e+02 Score=25.77 Aligned_cols=74 Identities=31% Similarity=0.398 Sum_probs=45.9
Q ss_pred HHHHHHHHhcCCCccEEEeCCCChHHHHHH---HHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 9 CAVALALNDLGYKAVGIRLDSGDLAYLSCE---ARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 9 i~Va~~L~~~g~~~~GVRlDSGDl~~ls~~---~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
=.+.+++. .|-++.|| +.=||..|.-- ..++.... +-..+.|.=||=-+.+.+..+...| +|+|=
T Consensus 167 eEl~rAl~-~ga~iIGI--NnRdL~tf~vdl~~t~~la~~~-------p~~~~~IsESGI~~~~dv~~l~~~g--a~a~L 234 (254)
T COG0134 167 EELERALK-LGAKIIGI--NNRDLTTLEVDLETTEKLAPLI-------PKDVILISESGISTPEDVRRLAKAG--ADAFL 234 (254)
T ss_pred HHHHHHHh-CCCCEEEE--eCCCcchheecHHHHHHHHhhC-------CCCcEEEecCCCCCHHHHHHHHHcC--CCEEE
Confidence 34455554 67788886 34454333222 23333332 3234444445555599999999998 78999
Q ss_pred ecCcccccC
Q 026886 86 IGTYLVTCY 94 (231)
Q Consensus 86 VGT~Lvt~~ 94 (231)
|||+|+.+.
T Consensus 235 VG~slM~~~ 243 (254)
T COG0134 235 VGEALMRAD 243 (254)
T ss_pred ecHHHhcCC
Confidence 999998764
No 286
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=23.05 E-value=1.8e+02 Score=26.61 Aligned_cols=38 Identities=26% Similarity=0.404 Sum_probs=26.5
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCc-eeEEeecCccc
Q 026886 54 DFEKMSITASNDLNEETLDALNKQGHE-VDAFGIGTYLV 91 (231)
Q Consensus 54 g~~~v~Iv~S~~Lde~~I~~L~~~ga~-id~fGVGT~Lv 91 (231)
....+-|++||-.|.-+-.-....|.+ ...||.||.|-
T Consensus 112 ~~~~~viv~~npvd~~t~~~~~~~g~~~~~viG~gt~LD 150 (309)
T cd05294 112 APDTKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHLD 150 (309)
T ss_pred CCCeEEEEeCCchHHHHHHHHHhcCCCHHHEeeccchHH
Confidence 456678888988887665544444543 67899999873
No 287
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=22.98 E-value=2.3e+02 Score=24.36 Aligned_cols=72 Identities=18% Similarity=0.102 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCC------ccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCC
Q 026886 7 NFCAVALALNDLGYK------AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGH 79 (231)
Q Consensus 7 nai~Va~~L~~~g~~------~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Ld-e~~I~~L~~~ga 79 (231)
+.+++|+.+.+.|.+ +.+.--.+|.-..+. +++.++ .++.++++||+. .+.+.++.+.|
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~---~~i~~~----------~~~pv~~~ggi~~~~d~~~~~~~G- 96 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLFELI---SNLAEE----------CFMPLTVGGGIRSLEDAKKLLSLG- 96 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHH---HHHHHh----------CCCCEEEECCCCCHHHHHHHHHcC-
Confidence 678899999887765 223222233322222 333333 234778888887 67888888877
Q ss_pred ceeEEeecCccccc
Q 026886 80 EVDAFGIGTYLVTC 93 (231)
Q Consensus 80 ~id~fGVGT~Lvt~ 93 (231)
++..-+||.+..+
T Consensus 97 -~~~vilg~~~l~~ 109 (232)
T TIGR03572 97 -ADKVSINTAALEN 109 (232)
T ss_pred -CCEEEEChhHhcC
Confidence 5566788887664
No 288
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=22.96 E-value=2.6e+02 Score=25.59 Aligned_cols=67 Identities=22% Similarity=0.362 Sum_probs=35.3
Q ss_pred HHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC
Q 026886 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga 79 (231)
.+.++++++.+.| ...||+=-|.|. +-+.+-++++.+.+ ..++.++.|.-.|.+-.+.+..|.+.|.
T Consensus 49 ei~~li~~~~~~G--v~~I~~tGGEPl-lr~dl~~li~~i~~---~~~l~~i~itTNG~ll~~~~~~L~~aGl 115 (329)
T PRK13361 49 ELAWLAQAFTELG--VRKIRLTGGEPL-VRRGCDQLVARLGK---LPGLEELSLTTNGSRLARFAAELADAGL 115 (329)
T ss_pred HHHHHHHHHHHCC--CCEEEEECcCCC-ccccHHHHHHHHHh---CCCCceEEEEeChhHHHHHHHHHHHcCC
Confidence 4456666666666 457888666543 22334444444422 2234454444333334456777777764
No 289
>TIGR00538 hemN oxygen-independent coproporphyrinogen III oxidase. This model represents HemN, the oxygen-independent coproporphyrinogen III oxidase that replaces HemF function under anaerobic conditions. Several species, including E. coli, Helicobacter pylori, and Aquifex aeolicus, have both a member of this family and a member of another, closely related family for which there is no evidence of coproporphyrinogen III oxidase activity. Members of this family have a perfectly conserved motif PYRT[SC]YP in a region N-terminal to the region of homology with the related uncharacterized protein.
Probab=22.96 E-value=3.5e+02 Score=26.07 Aligned_cols=68 Identities=19% Similarity=0.391 Sum_probs=43.4
Q ss_pred CccEEEeCCCChHHH-HHHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCceeEEeecC
Q 026886 21 KAVGIRLDSGDLAYL-SCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 21 ~~~GVRlDSGDl~~l-s~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~id~fGVGT 88 (231)
.+.-|=+=-|.+..+ ..++.++++.+...+.+..-..+.+-+. +.+|++.++.|.+.|...-++||=|
T Consensus 102 ~v~~I~fgGGtP~~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~l~~e~l~~lk~~G~~risiGvqS 171 (455)
T TIGR00538 102 HVSQLHWGGGTPTYLSPEQISRLMKLIRENFPFNADAEISIEIDPRYITKDVIDALRDEGFNRLSFGVQD 171 (455)
T ss_pred ceEEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEeccCcCCHHHHHHHHHcCCCEEEEcCCC
Confidence 344455555666554 4557777777766665543334455443 5789999999999996655566543
No 290
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=22.87 E-value=2.1e+02 Score=24.39 Aligned_cols=72 Identities=21% Similarity=0.147 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCCccEE----EeC--CCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCC
Q 026886 7 NFCAVALALNDLGYKAVGI----RLD--SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGH 79 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GV----RlD--SGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Ld-e~~I~~L~~~ga 79 (231)
+.+.+|+++.+.|.+..-| +.. .|.-..+.+++++ + .++.+.+.|++. .+.++++.+.|
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~---~----------~~~pv~~~GgI~~~e~~~~~~~~G- 95 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVK---A----------VGIPVQVGGGIRSLEDIERLLDLG- 95 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHH---h----------cCCCEEEeCCcCCHHHHHHHHHcC-
Confidence 6788899998877553333 122 2222223322222 2 135788888865 48888888888
Q ss_pred ceeEEeecCccccc
Q 026886 80 EVDAFGIGTYLVTC 93 (231)
Q Consensus 80 ~id~fGVGT~Lvt~ 93 (231)
.|..-|||.+.++
T Consensus 96 -ad~vvigs~~l~d 108 (234)
T cd04732 96 -VSRVIIGTAAVKN 108 (234)
T ss_pred -CCEEEECchHHhC
Confidence 5677799998775
No 291
>PRK01215 competence damage-inducible protein A; Provisional
Probab=22.80 E-value=2.4e+02 Score=25.55 Aligned_cols=50 Identities=20% Similarity=0.255 Sum_probs=32.5
Q ss_pred HHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC
Q 026886 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN 67 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Ld 67 (231)
|+-.++..|.+.|.++..+-+=.=|...+...++++++. .+ -|+.|||+-
T Consensus 24 n~~~l~~~L~~~G~~v~~~~~v~Dd~~~I~~~l~~a~~~----------~D-lVIttGG~g 73 (264)
T PRK01215 24 NASWIARRLTYLGYTVRRITVVMDDIEEIVSAFREAIDR----------AD-VVVSTGGLG 73 (264)
T ss_pred hHHHHHHHHHHCCCeEEEEEEeCCCHHHHHHHHHHHhcC----------CC-EEEEeCCCc
Confidence 566677788888988766665555655555555555432 24 777788764
No 292
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=22.53 E-value=4.9e+02 Score=25.22 Aligned_cols=40 Identities=15% Similarity=0.233 Sum_probs=30.9
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCceeEEeecCcccccCCCCc
Q 026886 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (231)
Q Consensus 57 ~v~Iv~S~~Ld-e~~I~~L~~~ga~id~fGVGT~Lvt~~~~p~ 98 (231)
.+.|+++||+. ...|..-.+.| .++..+||-|+.+...|.
T Consensus 327 ~vpviadGGi~~~~di~kAla~G--A~~V~~G~~~a~~~e~pg 367 (450)
T TIGR01302 327 GIPVIADGGIRYSGDIVKALAAG--ADAVMLGSLLAGTTESPG 367 (450)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC--CCEEEECchhhcCCcCCC
Confidence 35799999874 55666667778 568999999999877664
No 293
>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=22.39 E-value=4.7e+02 Score=21.90 Aligned_cols=62 Identities=11% Similarity=-0.022 Sum_probs=35.5
Q ss_pred HHHHhcCCCccEEEeCCC-ChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 13 LALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 13 ~~L~~~g~~~~GVRlDSG-Dl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
.++.+.||.+. -..+. |...... ..+.+.+ .+ -+.-|+++...+.+.+.++.+.+.|+-.++
T Consensus 23 ~~~~~~gy~v~--~~~~~~~~~~~~~-~i~~~~~----~~----~dgiii~~~~~~~~~~~~~~~~~~pvV~i~ 85 (269)
T cd06293 23 EEADARGLSLV--LCATRNRPERELT-YLRWLDT----NH----VDGLIFVTNRPDDGALAKLINSYGNIVLVD 85 (269)
T ss_pred HHHHHCCCEEE--EEeCCCCHHHHHH-HHHHHHH----CC----CCEEEEeCCCCCHHHHHHHHhcCCCEEEEC
Confidence 44667788773 33443 5443332 2333333 23 333666666677777888888887766665
No 294
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=22.28 E-value=1e+02 Score=30.04 Aligned_cols=48 Identities=23% Similarity=0.367 Sum_probs=29.6
Q ss_pred cCCCccEEEeCCCCh-HHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHh
Q 026886 18 LGYKAVGIRLDSGDL-AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNK 76 (231)
Q Consensus 18 ~g~~~~GVRlDSGDl-~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~ 76 (231)
.|-.+..||+.|||+ ..+++-+.+..++. ++.+|..+. |.+.++.-.+
T Consensus 68 ~~~D~Ialr~~S~DPae~fa~~vk~V~~a~----------~~PLIL~~~-D~evl~aale 116 (386)
T PF03599_consen 68 LGADMIALRLESGDPAEEFAKAVKKVAEAV----------DVPLILCGC-DPEVLKAALE 116 (386)
T ss_dssp EE-SEEEEE-GGGSTHHHHHHHHHHHHHC-----------SSEEEEESS-HHHHHHHHHH
T ss_pred ccccEEEEEecCCChHHHHHHHHHHHHHhc----------CCCEEEEeC-CHHHHHHHHH
Confidence 356678999999997 88877777776643 334444333 6666555544
No 295
>cd00956 Transaldolase_FSA Transaldolase-like fructose-6-phosphate aldolases (FSA) found in bacteria and archaea, which are member of the MipB/TalC subfamily of class I aldolases. FSA catalyze an aldol cleavage of fructose 6-phosphate and do not utilize fructose, fructose 1-phosphate, fructose 1,6-phosphate, or dihydroxyacetone phosphate. The enzymes belong to the transaldolase family that serves in transfer reactions in the pentose phosphate cycle, and are more distantly related to fructose 1,6-bisphosphate aldolase.
Probab=22.23 E-value=2.8e+02 Score=24.15 Aligned_cols=71 Identities=21% Similarity=0.196 Sum_probs=46.1
Q ss_pred cCchHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026886 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (231)
Q Consensus 2 ~SGvpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~ 80 (231)
++|.++.-.+.+++.+......-+-+++-|.....++++++.+.. |.--+||=++. =-.+.|+.|.++|..
T Consensus 33 k~~~~~~~~~~~~i~~~~~~~v~~qv~~~~~e~~i~~a~~l~~~~-------~~~~iKIP~T~-~gl~ai~~L~~~gi~ 103 (211)
T cd00956 33 KSGRIDFEAVLKEICEIIDGPVSAQVVSTDAEGMVAEARKLASLG-------GNVVVKIPVTE-DGLKAIKKLSEEGIK 103 (211)
T ss_pred hcCCcCHHHHHHHHHHhcCCCEEEEEEeCCHHHHHHHHHHHHHhC-------CCEEEEEcCcH-hHHHHHHHHHHcCCc
Confidence 467767778888877665444565666777777777777776653 33445555554 335678888888644
No 296
>PRK07565 dihydroorotate dehydrogenase 2; Reviewed
Probab=22.17 E-value=3.3e+02 Score=25.10 Aligned_cols=34 Identities=18% Similarity=0.264 Sum_probs=27.1
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccc
Q 026886 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 57 ~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
++.|++|||+ +.+.+.++...| .++.+|||.+..
T Consensus 239 ~ipIig~GGI~s~~Da~e~l~aG--A~~V~v~t~~~~ 273 (334)
T PRK07565 239 GADLAATTGVHDAEDVIKMLLAG--ADVVMIASALLR 273 (334)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCceeeehHHhh
Confidence 5689999998 566677777788 578999998876
No 297
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=22.14 E-value=2.1e+02 Score=26.17 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=27.6
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCceeEEeecCccc
Q 026886 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLV 91 (231)
Q Consensus 56 ~~v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lv 91 (231)
.++.+++++|++.+-+.++.++ .|++=|||++=
T Consensus 199 ~~~PvllggGvt~eNv~e~l~~---adGviVgS~~K 231 (257)
T TIGR00259 199 KDTPVLAGSGVNLENVEELLSI---ADGVIVATTIK 231 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHhh---CCEEEECCCcc
Confidence 4557999999999999999886 67888898874
No 298
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=22.07 E-value=2.4e+02 Score=23.95 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=26.8
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCceeEEeecCccccc
Q 026886 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~Iv~S~~Ld-e~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
++.|+++||+. .+.+.++.+.| +|++-||+.+...
T Consensus 190 ~ipvi~~GGi~~~~di~~~~~~G--a~gv~vg~~~~~~ 225 (234)
T cd04732 190 GIPVIASGGVSSLDDIKALKELG--VAGVIVGKALYEG 225 (234)
T ss_pred CCCEEEecCCCCHHHHHHHHHCC--CCEEEEeHHHHcC
Confidence 45789999887 34588887776 6788899888664
No 299
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=21.69 E-value=2.4e+02 Score=28.59 Aligned_cols=57 Identities=14% Similarity=0.085 Sum_probs=39.4
Q ss_pred hHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcC-------------CceeEEeecCc
Q 026886 32 LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG-------------HEVDAFGIGTY 89 (231)
Q Consensus 32 l~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~g-------------a~id~fGVGT~ 89 (231)
......++|+.|+++-+. .+..-..+-+++|||||=-.|..+..+- .++.+|-||..
T Consensus 215 ~~~~~~~lr~~L~~AV~~-rl~sdvpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~ 284 (586)
T PTZ00077 215 GEIDLEEIREALEAAVRK-RLMGDVPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLE 284 (586)
T ss_pred HHHHHHHHHHHHHHHHHH-HhcCCCceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCC
Confidence 344556788888776441 1223356789999999999999886542 34778888864
No 300
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=21.69 E-value=1.5e+02 Score=27.10 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=24.9
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCceeEEeecCcccc
Q 026886 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 58 v~Iv~S~~Lde~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
+.+++.+|.+++-|.++.+. .|++=|||+|-.
T Consensus 201 ~PVlvGSGvt~~Ni~~~l~~---ADG~IVGS~~K~ 232 (254)
T PF03437_consen 201 VPVLVGSGVTPENIAEYLSY---ADGAIVGSYFKK 232 (254)
T ss_pred CCEEEecCCCHHHHHHHHHh---CCEEEEeeeeee
Confidence 57888888888888888765 577888888743
No 301
>TIGR00737 nifR3_yhdG putative TIM-barrel protein, nifR3 family. Members of this family show a distant relationship to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase.
Probab=21.66 E-value=3e+02 Score=25.13 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=23.9
Q ss_pred eEEEEeCCC-CHHHHHHHHh-cCCceeEEeecCccccc
Q 026886 58 MSITASNDL-NEETLDALNK-QGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 58 v~Iv~S~~L-de~~I~~L~~-~ga~id~fGVGT~Lvt~ 93 (231)
+.|+++||+ +.+.+.++.+ .| .|+..||+.+...
T Consensus 193 ipvi~nGgI~~~~da~~~l~~~g--ad~VmigR~~l~~ 228 (319)
T TIGR00737 193 IPVIGNGDIFSPEDAKAMLETTG--CDGVMIGRGALGN 228 (319)
T ss_pred CcEEEeCCCCCHHHHHHHHHhhC--CCEEEEChhhhhC
Confidence 578888888 4566666663 34 6788888888764
No 302
>cd01481 vWA_collagen_alpha3-VI-like VWA_collagen alpha 3(VI) like: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=21.58 E-value=1.3e+02 Score=24.67 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=23.5
Q ss_pred CCCCCeEEEEeCCCCHHH----HHHHHhcCCceeEEeecCc
Q 026886 53 PDFEKMSITASNDLNEET----LDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 53 ~g~~~v~Iv~S~~Lde~~----I~~L~~~ga~id~fGVGT~ 89 (231)
++.+++-|++++|-.-+. .+.|++.|.. .|+||..
T Consensus 104 ~~~~kv~vviTdG~s~d~~~~~a~~lr~~gv~--i~~vG~~ 142 (165)
T cd01481 104 EGVPQFLVLITGGKSQDDVERPAVALKRAGIV--PFAIGAR 142 (165)
T ss_pred CCCCeEEEEEeCCCCcchHHHHHHHHHHCCcE--EEEEeCC
Confidence 356788899998876544 3566777854 5555544
No 303
>cd00405 PRAI Phosphoribosylanthranilate isomerase (PRAI) catalyzes the fourth step of the tryptophan biosynthesis, the conversion of N-(5'- phosphoribosyl)-anthranilate (PRA) to 1-(o-carboxyphenylamino)- 1-deoxyribulose 5-phosphate (CdRP). Most PRAIs are monomeric, monofunctional and thermolabile, but in some thermophile organisms PRAI is dimeric for reasons of stability and in others it is fused to other components of the tryptophan biosynthesis pathway to form multifunctional enzymes.
Probab=21.58 E-value=1.3e+02 Score=25.39 Aligned_cols=76 Identities=16% Similarity=0.293 Sum_probs=40.4
Q ss_pred chHHHHHHHHHHHhcCCCccEEEeCCCChHHH-HHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcee
Q 026886 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYL-SCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVD 82 (231)
Q Consensus 4 Gvpnai~Va~~L~~~g~~~~GVRlDSGDl~~l-s~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id 82 (231)
|+.+.-. ++++.+.|-.+.|+|....+..++ ...++++.+.+.. ....|.+++.+ +.+.|.++... ..+|
T Consensus 5 Gi~~~ed-~~~a~~~Gvd~ig~i~~~~s~R~v~~~~a~~l~~~~~~-----~~~~V~v~vn~--~~~~i~~ia~~-~~~d 75 (203)
T cd00405 5 GITTLED-ALAAAEAGADAIGFIFAPKSPRYVSPEQAREIVAALPP-----FVKRVGVFVNE--DLEEILEIAEE-LGLD 75 (203)
T ss_pred CCCCHHH-HHHHHHcCCCEEEEecCCCCCCCCCHHHHHHHHHhCCC-----CCcEEEEEeCC--CHHHHHHHHHh-cCCC
Confidence 4444333 333446799999999987766666 3334444443300 13445555544 46666666553 1244
Q ss_pred EEeecC
Q 026886 83 AFGIGT 88 (231)
Q Consensus 83 ~fGVGT 88 (231)
..=+|.
T Consensus 76 ~Vqlhg 81 (203)
T cd00405 76 VVQLHG 81 (203)
T ss_pred EEEECC
Confidence 444443
No 304
>cd00887 MoeA MoeA family. Members of this family are involved in biosynthesis of the molybdenum cofactor (MoCF), an essential cofactor of a diverse group of redox enzymes. MoCF biosynthesis is an evolutionarily conserved pathway present in eubacteria, archaea and eukaryotes. MoCF contains a tricyclic pyranopterin, termed molybdopterin (MPT). MoeA, together with MoaB, is responsible for the metal incorporation into MPT, the third step in MoCF biosynthesis. The plant homolog Cnx1 is a MoeA-MogA fusion protein. The mammalian homolog gephyrin is a MogA-MoeA fusion protein, that plays a critical role in postsynaptic anchoring of inhibitory glycine receptors and major GABAa receptor subtypes.
Probab=21.58 E-value=5.5e+02 Score=24.33 Aligned_cols=70 Identities=20% Similarity=0.259 Sum_probs=44.9
Q ss_pred HHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCC---HHHHHH-HHhcCCcee
Q 026886 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN---EETLDA-LNKQGHEVD 82 (231)
Q Consensus 7 nai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Ld---e~~I~~-L~~~ga~id 82 (231)
|...++..|++.|.....+.+=.=|...+.+.+++++++ .+ -|+.|||.- .+-+.+ +.+.|..+.
T Consensus 196 n~~~l~~~l~~~G~~~~~~~~v~Dd~~~i~~~l~~a~~~----------~D-liittGG~s~g~~D~~~~al~~~g~~~~ 264 (394)
T cd00887 196 NSYMLAALLRELGAEVVDLGIVPDDPEALREALEEALEE----------AD-VVITSGGVSVGDYDFVKEVLEELGGEVL 264 (394)
T ss_pred hHHHHHHHHHHCCCEEEEeceeCCCHHHHHHHHHHHhhC----------CC-EEEEeCCCCCCcchhHHHHHHhCCCeEE
Confidence 556666678888888777666666766666666665543 34 777888874 233333 344466777
Q ss_pred EEeec
Q 026886 83 AFGIG 87 (231)
Q Consensus 83 ~fGVG 87 (231)
.+||.
T Consensus 265 f~gv~ 269 (394)
T cd00887 265 FHGVA 269 (394)
T ss_pred EEEEE
Confidence 88876
No 305
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=21.51 E-value=4.9e+02 Score=21.84 Aligned_cols=62 Identities=16% Similarity=0.124 Sum_probs=33.8
Q ss_pred HHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 12 a~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
.+++++.|+.+.=+..+.. . .+++.+.+.. .-.+.-|+.+...+...+.++.+.|.|+-.||
T Consensus 33 ~~~~~~~g~~~~v~~~~~~---~-~~~~~~~l~~--------~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~~ 94 (275)
T cd06295 33 ADALAERGYDLLLSFVSSP---D-RDWLARYLAS--------GRADGVILIGQHDQDPLPERLAETGLPFVVWG 94 (275)
T ss_pred HHHHHHcCCEEEEEeCCch---h-HHHHHHHHHh--------CCCCEEEEeCCCCChHHHHHHHhCCCCEEEEC
Confidence 3446667877643333322 1 2334444432 22343555555556777888888887765554
No 306
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=21.48 E-value=4.2e+02 Score=23.29 Aligned_cols=69 Identities=20% Similarity=0.203 Sum_probs=39.3
Q ss_pred HHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCCceeEEee
Q 026886 8 FCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 8 ai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~L-de~~I~~L~~~ga~id~fGV 86 (231)
+.+.|.+.+..|.++.=+--=||-....+.++.+.+.+. .++.+++.+|+ +.+.++++.+.|+ |.+=|
T Consensus 136 ~~~~a~aa~~~G~~~i~Le~~sGa~~~v~~e~i~~Vk~~---------~~~Pv~vGGGIrs~e~a~~l~~~GA--D~VVV 204 (205)
T TIGR01769 136 AAAYCLAAKYFGMKWVYLEAGSGASYPVNPETISLVKKA---------SGIPLIVGGGIRSPEIAYEIVLAGA--DAIVT 204 (205)
T ss_pred HHHHHHHHHHcCCCEEEEEcCCCCCCCCCHHHHHHHHHh---------hCCCEEEeCCCCCHHHHHHHHHcCC--CEEEe
Confidence 445555566667665554221554312223333333332 24589999999 8899999988884 44444
Q ss_pred c
Q 026886 87 G 87 (231)
Q Consensus 87 G 87 (231)
|
T Consensus 205 G 205 (205)
T TIGR01769 205 G 205 (205)
T ss_pred C
Confidence 3
No 307
>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a
Probab=21.43 E-value=4.5e+02 Score=22.29 Aligned_cols=62 Identities=16% Similarity=0.158 Sum_probs=34.0
Q ss_pred HHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCC--CCHHHHHHHHhcCCceeEEe
Q 026886 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASND--LNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 13 ~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~--Lde~~I~~L~~~ga~id~fG 85 (231)
.++++.|+.+ +-.++.|.......++.+.. .+ -+.-|+++.+ ...+.+..+.+.|.|+-.++
T Consensus 23 ~~~~~~g~~~--~~~~~~~~~~~~~~i~~~~~-----~~----~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~ 86 (289)
T cd01540 23 KAAKEKGFTV--VKIDVPDGEKVLSAIDNLGA-----QG----AKGFVICVPDVKLGPAIVAKAKAYNMKVVAVD 86 (289)
T ss_pred HHHHHcCCEE--EEccCCCHHHHHHHHHHHHH-----cC----CCEEEEccCchhhhHHHHHHHHhCCCeEEEec
Confidence 4466678775 34566664433332333222 22 3335555543 44566788888888876664
No 308
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=21.25 E-value=1.2e+02 Score=25.23 Aligned_cols=27 Identities=19% Similarity=0.420 Sum_probs=20.3
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCceeEEee
Q 026886 58 MSITASNDLNEETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 58 v~Iv~S~~Lde~~I~~L~~~ga~id~fGV 86 (231)
+.+++-||+|++.+.++.+.|+ +++.+
T Consensus 150 ~pv~AlGGI~~~~i~~l~~~Ga--~gvAv 176 (180)
T PF02581_consen 150 IPVYALGGITPENIPELREAGA--DGVAV 176 (180)
T ss_dssp SCEEEESS--TTTHHHHHHTT---SEEEE
T ss_pred CCEEEEcCCCHHHHHHHHHcCC--CEEEE
Confidence 6999999999999999999984 45444
No 309
>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,
Probab=21.17 E-value=3.9e+02 Score=22.09 Aligned_cols=17 Identities=35% Similarity=0.528 Sum_probs=10.3
Q ss_pred HHHHHHHHhcCCCccEE
Q 026886 9 CAVALALNDLGYKAVGI 25 (231)
Q Consensus 9 i~Va~~L~~~g~~~~GV 25 (231)
-.++..|.+.|++=.++
T Consensus 105 ~~~~~~l~~~g~~~i~~ 121 (268)
T cd01575 105 RAMARHLLARGYRRIGF 121 (268)
T ss_pred HHHHHHHHHCCCCcEEE
Confidence 34455666777775554
No 310
>COG4472 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=21.14 E-value=55 Score=25.37 Aligned_cols=36 Identities=42% Similarity=0.583 Sum_probs=26.2
Q ss_pred HHHHHHHhcCCCc----cEEEeCCCChHHHHHH--HHHHHHHH
Q 026886 10 AVALALNDLGYKA----VGIRLDSGDLAYLSCE--ARKFFRTI 46 (231)
Q Consensus 10 ~Va~~L~~~g~~~----~GVRlDSGDl~~ls~~--~R~~ld~~ 46 (231)
.|-..|.+.||.+ .|- +=|||++|.-+. +|.++++.
T Consensus 26 ~VY~sL~ekGYNpiNQiVGY-llSGDPaYIpr~ndARn~IRk~ 67 (88)
T COG4472 26 DVYNSLEEKGYNPINQIVGY-LLSGDPAYIPRYNDARNQIRKL 67 (88)
T ss_pred HHHHHHHHcCCChHHHHHhh-hccCCccccCccccHHHHHHHH
Confidence 4667789999875 354 449999998765 77777664
No 311
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=21.14 E-value=4.9e+02 Score=21.73 Aligned_cols=30 Identities=20% Similarity=0.112 Sum_probs=21.6
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 56 EKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 56 ~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
-+.-|+++.+++...+..+.+.|.|+-.|+
T Consensus 56 vdgii~~~~~~~~~~~~~~~~~~ipvV~~~ 85 (268)
T cd06270 56 CDALILHSKALSDDELIELAAQVPPLVLIN 85 (268)
T ss_pred CCEEEEecCCCCHHHHHHHhhCCCCEEEEe
Confidence 444666666677767888888888876765
No 312
>cd02811 IDI-2_FMN Isopentenyl-diphosphate:dimethylallyl diphosphate isomerase type 2 (IDI-2) FMN-binding domain. Two types of IDIs have been characterized at present. The long known IDI-1 is only dependent on divalent metals for activity, whereas IDI-2 requires a metal, FMN and NADPH. IDI-2 catalyzes the interconversion of isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP) in the mevalonate pathway.
Probab=21.04 E-value=2.9e+02 Score=25.63 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=27.2
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCceeEEeecCcccc
Q 026886 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 57 ~v~Iv~S~~L-de~~I~~L~~~ga~id~fGVGT~Lvt 92 (231)
++.|++|||+ +...+.+....| .|..|+|+.+..
T Consensus 255 ~ipIiasGGIr~~~dv~kal~lG--Ad~V~i~~~~L~ 289 (326)
T cd02811 255 DLPLIASGGIRNGLDIAKALALG--ADLVGMAGPFLK 289 (326)
T ss_pred CCcEEEECCCCCHHHHHHHHHhC--CCEEEEcHHHHH
Confidence 6899999996 567777777778 689999987643
No 313
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=21.00 E-value=1.6e+02 Score=27.18 Aligned_cols=52 Identities=23% Similarity=0.174 Sum_probs=31.1
Q ss_pred HHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc-eeEEeecCccccc
Q 026886 42 FFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE-VDAFGIGTYLVTC 93 (231)
Q Consensus 42 ~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~-id~fGVGT~Lvt~ 93 (231)
++.+....+.--++.-+-|++||=.|.-+-.-....|.+ --.||.||.|-|.
T Consensus 98 I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs~ 150 (307)
T cd05290 98 IIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDTA 150 (307)
T ss_pred HHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHHhCcChhheecccchHHHH
Confidence 333333333333667778888887776555544444543 4578888888664
No 314
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.90 E-value=3.9e+02 Score=22.08 Aligned_cols=14 Identities=7% Similarity=0.242 Sum_probs=9.1
Q ss_pred EEEeEECCcceeec
Q 026886 103 FKLVEINKQPRIKL 116 (231)
Q Consensus 103 yKLve~~g~P~~Kl 116 (231)
+.++.+++.|..+.
T Consensus 205 i~i~~~d~~~~~~~ 218 (266)
T cd06278 205 VSVIGFDDIPMAAW 218 (266)
T ss_pred eEEEEeCChhHhhc
Confidence 55777777665554
No 315
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=20.72 E-value=3.7e+02 Score=22.12 Aligned_cols=26 Identities=31% Similarity=0.179 Sum_probs=12.0
Q ss_pred HHHHHhcCCCccEEEeCCCChHHHHHH
Q 026886 12 ALALNDLGYKAVGIRLDSGDLAYLSCE 38 (231)
Q Consensus 12 a~~L~~~g~~~~GVRlDSGDl~~ls~~ 38 (231)
+.+|++.|....-+ -++++...|.+.
T Consensus 89 a~~l~~~g~~~~~~-~~~~~~~~L~~~ 114 (239)
T cd06578 89 AEALREAGLTADFV-PEEGDSEGLLEL 114 (239)
T ss_pred HHHHHHcCCCceeC-CCccCHHHHHHH
Confidence 34455555443333 355664444333
No 316
>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=20.70 E-value=4.2e+02 Score=22.17 Aligned_cols=61 Identities=15% Similarity=0.153 Sum_probs=32.8
Q ss_pred HHHhcCCCccEEEeCC-CChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHH-----HHHHHHhcCCceeEEe
Q 026886 14 ALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEE-----TLDALNKQGHEVDAFG 85 (231)
Q Consensus 14 ~L~~~g~~~~GVRlDS-GDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~-----~I~~L~~~ga~id~fG 85 (231)
++++.|+.+. -.++ .|.....+-++.++.. + -+.-|+++...+.. .+.++.+.|.|+-.+|
T Consensus 24 ~~~~~g~~~~--~~~~~~~~~~~~~~i~~l~~~-----~----vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~ 90 (273)
T cd06292 24 ALAQYGYTVL--LCNTYRGGVSEADYVEDLLAR-----G----VRGVVFISSLHADTHADHSHYERLAERGLPVVLVN 90 (273)
T ss_pred HHHHCCCEEE--EEeCCCChHHHHHHHHHHHHc-----C----CCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEEc
Confidence 4556788764 2344 3444333333333332 2 34366666444443 3788888888866654
No 317
>cd01974 Nitrogenase_MoFe_beta Nitrogenase_MoFe_beta: Nitrogenase MoFe protein, beta subunit. The nitrogenase enzyme catalyzes the ATP-dependent reduction of dinitrogen to ammonia. The Molybdenum (Mo-) nitrogenase is the most widespread and best characterized of these systems. Mo-nitrogenase consists of the MoFe protein (component 1) and the Fe protein (component 2). MoFe is an alpha2beta2 tetramer. This group contains the beta subunit of the MoFe protein. Each alphabeta pair of MoFe contains one P-cluster (at the alphabeta interface) and, one molecule of iron molybdenum cofactor (FeMoco) contained within the alpha subunit. The Fe protein contains a single [4Fe-4S] cluster. Electrons are transferred from the [4Fe-4S] cluster of the Fe protein to the P-cluster of the MoFe and in turn to FeMoCo, the site of substrate reduction.
Probab=20.65 E-value=5e+02 Score=24.86 Aligned_cols=73 Identities=18% Similarity=0.161 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCceeEEe
Q 026886 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 6 pnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id~fG 85 (231)
..++.+++.|.++|..+..+..+..+.. +-.++++++++. +...++.|+.+ -|.+.+.+..+... .|.+
T Consensus 313 ~~~~~la~~L~elGm~v~~~~~~~~~~~-~~~~~~~~l~~~------~~~~~~~v~~~--~d~~e~~~~i~~~~-pDli- 381 (435)
T cd01974 313 DFLIGLTSFLLELGMEPVHVLTGNGGKR-FEKEMQALLDAS------PYGAGAKVYPG--KDLWHLRSLLFTEP-VDLL- 381 (435)
T ss_pred HHHHHHHHHHHHCCCEEEEEEeCCCCHH-HHHHHHHHHhhc------CCCCCcEEEEC--CCHHHHHHHHhhcC-CCEE-
Confidence 4678888999999999999888776644 455677777653 11134455554 46777776655432 3443
Q ss_pred ecCc
Q 026886 86 IGTY 89 (231)
Q Consensus 86 VGT~ 89 (231)
||++
T Consensus 382 iG~s 385 (435)
T cd01974 382 IGNT 385 (435)
T ss_pred EECc
Confidence 5553
No 318
>PRK15427 colanic acid biosynthesis glycosyltransferase WcaL; Provisional
Probab=20.65 E-value=5.4e+02 Score=24.04 Aligned_cols=68 Identities=15% Similarity=0.149 Sum_probs=44.6
Q ss_pred CchHHHHHHHHHHHhcCCCccEEEeCCCChHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcee
Q 026886 3 SGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVD 82 (231)
Q Consensus 3 SGvpnai~Va~~L~~~g~~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~ga~id 82 (231)
-|+..+|+++..|.+.+..+.=+=+=.|+. ..++++...+. |+.+ .|.+-|-++.+.+.++.+. .|
T Consensus 235 Kg~~~ll~a~~~l~~~~~~~~l~ivG~G~~---~~~l~~~~~~~-------~l~~-~V~~~G~~~~~el~~~l~~---aD 300 (406)
T PRK15427 235 KGLHVAIEACRQLKEQGVAFRYRILGIGPW---ERRLRTLIEQY-------QLED-VVEMPGFKPSHEVKAMLDD---AD 300 (406)
T ss_pred cCHHHHHHHHHHHHhhCCCEEEEEEECchh---HHHHHHHHHHc-------CCCC-eEEEeCCCCHHHHHHHHHh---CC
Confidence 488999999988876654321111113442 34456666664 6666 7888999998888888876 45
Q ss_pred EE
Q 026886 83 AF 84 (231)
Q Consensus 83 ~f 84 (231)
.|
T Consensus 301 v~ 302 (406)
T PRK15427 301 VF 302 (406)
T ss_pred EE
Confidence 55
No 319
>TIGR00161 conserved hypothetical protein TIGR00161. This ortholog set includes MJ0106 from Methanococcus jannaschii and AF1251 from Archaeoglobus fulgidus, but not MJ1210 or AF0525.
Probab=20.58 E-value=61 Score=28.80 Aligned_cols=30 Identities=10% Similarity=0.145 Sum_probs=25.4
Q ss_pred CccEEEeCCCChHHHHHHHHHHHHHHHHhh
Q 026886 21 KAVGIRLDSGDLAYLSCEARKFFRTIEKEF 50 (231)
Q Consensus 21 ~~~GVRlDSGDl~~ls~~~R~~ld~~~~~l 50 (231)
++.|+-+|+.+|...++++++.+++..++.
T Consensus 195 ~l~~~~id~~~L~e~Ae~ie~~~~el~e~~ 224 (238)
T TIGR00161 195 KMLNTNVDPEPLLKEAEAIESRLKKLAEQV 224 (238)
T ss_pred HHhCCCcCHHHHHHHHHHHHHHHHHHHHHH
Confidence 456999999999999999999999876533
No 320
>PRK06256 biotin synthase; Validated
Probab=20.50 E-value=6.5e+02 Score=22.85 Aligned_cols=73 Identities=19% Similarity=0.226 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHhcCCCccEEEe-CCCC-hH-HHHHHHHHHHHHHHHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCc
Q 026886 5 VPNFCAVALALNDLGYKAVGIRL-DSGD-LA-YLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHE 80 (231)
Q Consensus 5 vpnai~Va~~L~~~g~~~~GVRl-DSGD-l~-~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S-~~Lde~~I~~L~~~ga~ 80 (231)
....++.++++.+.|.. -+-+ +||. +. .....+.++++.+++.+ ++.+.+| |-++++.++.|.+.|.
T Consensus 93 ~eeI~~~~~~~~~~g~~--~~~l~~~g~~p~~~~~~~~~e~i~~i~~~~------~i~~~~~~g~l~~e~l~~LkeaG~- 163 (336)
T PRK06256 93 IEELIEAAKEAIEEGAG--TFCIVASGRGPSGKEVDQVVEAVKAIKEET------DLEICACLGLLTEEQAERLKEAGV- 163 (336)
T ss_pred HHHHHHHHHHHHHCCCC--EEEEEecCCCCCchHHHHHHHHHHHHHhcC------CCcEEecCCcCCHHHHHHHHHhCC-
Confidence 45566777777777643 2223 3443 21 11234445555543322 3456666 4589999999999984
Q ss_pred eeEEeec
Q 026886 81 VDAFGIG 87 (231)
Q Consensus 81 id~fGVG 87 (231)
+.+-+|
T Consensus 164 -~~v~~~ 169 (336)
T PRK06256 164 -DRYNHN 169 (336)
T ss_pred -CEEecC
Confidence 444443
No 321
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=20.38 E-value=1.3e+02 Score=26.38 Aligned_cols=68 Identities=21% Similarity=0.264 Sum_probs=43.4
Q ss_pred HHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHhc--C-CceeEEeecCcccccCC-------CCcceeEEE
Q 026886 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQ--G-HEVDAFGIGTYLVTCYA-------QAALGCVFK 104 (231)
Q Consensus 35 ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~~--g-a~id~fGVGT~Lvt~~~-------~p~l~~VyK 104 (231)
+..-+|+.+.+. |..++-|.+|||+|=-.+..+..+ + ..+-+|-+.+......+ ...+|+-+.
T Consensus 10 l~~~l~~~~~~~-------~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~~~~~~~~~a~~~a~~lgi~~~ 82 (248)
T cd00553 10 LVLFLRDYLRKS-------GFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRYSSEETREDAKELAEALGIEHV 82 (248)
T ss_pred HHHHHHHHHHHh-------CCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCCCCHHHHHHHHHHHHHhCCeEE
Confidence 344456666665 788999999999999998888753 2 34666666654322111 245676666
Q ss_pred EeEEC
Q 026886 105 LVEIN 109 (231)
Q Consensus 105 Lve~~ 109 (231)
.+.+.
T Consensus 83 ~i~i~ 87 (248)
T cd00553 83 NIDID 87 (248)
T ss_pred EeccH
Confidence 55543
No 322
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=20.37 E-value=3.9e+02 Score=20.25 Aligned_cols=12 Identities=50% Similarity=0.744 Sum_probs=6.6
Q ss_pred HHHHHHhcCCCc
Q 026886 11 VALALNDLGYKA 22 (231)
Q Consensus 11 Va~~L~~~g~~~ 22 (231)
++..|+..|++.
T Consensus 19 ~~~~l~~~G~~V 30 (119)
T cd02067 19 VARALRDAGFEV 30 (119)
T ss_pred HHHHHHHCCCEE
Confidence 344466667654
No 323
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=20.24 E-value=1.7e+02 Score=26.59 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=30.5
Q ss_pred CCeEEEEeCCCC-HHHHHHHHhcCCceeEEeecCccccc
Q 026886 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 56 ~~v~Iv~S~~Ld-e~~I~~L~~~ga~id~fGVGT~Lvt~ 93 (231)
.+..|++=.|++ .+.++++.+.| .|++=|||.++..
T Consensus 201 t~~Pi~vGFGI~~~e~~~~~~~~G--ADGvVVGSalv~~ 237 (263)
T CHL00200 201 TNKPIILGFGISTSEQIKQIKGWN--INGIVIGSACVQI 237 (263)
T ss_pred cCCCEEEECCcCCHHHHHHHHhcC--CCEEEECHHHHHH
Confidence 456899999999 99999999988 5788899999763
No 324
>PF09872 DUF2099: Uncharacterized protein conserved in archaea (DUF2099); InterPro: IPR009181 The exact function of this protein is unknown, but likely is linked to methanogenesis or a process closely connected to it.
Probab=20.15 E-value=3.6e+02 Score=24.93 Aligned_cols=61 Identities=20% Similarity=0.355 Sum_probs=43.6
Q ss_pred EEEeCCCC-hHHHHHHHHHHHHHHHHhhCCCCCCCeEEEEeCCCCHHHHHHHHh-cCCceeEEeecCcccc
Q 026886 24 GIRLDSGD-LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNK-QGHEVDAFGIGTYLVT 92 (231)
Q Consensus 24 GVRlDSGD-l~~ls~~~R~~ld~~~~~l~i~g~~~v~Iv~S~~Lde~~I~~L~~-~ga~id~fGVGT~Lvt 92 (231)
|+=||--+ -..+..-++++++. ||.++-+-+.+.=|..+|++|.+ .+..+-.|||=|.-++
T Consensus 139 giVLd~~tA~IDq~~Gv~kAie~--------Gyk~IaVTV~~~~~A~~iRele~~~~~~~~if~VHtTGis 201 (258)
T PF09872_consen 139 GIVLDPETARIDQVEGVKKAIEM--------GYKRIAVTVADAEDAKKIRELEKEEGVNIYIFGVHTTGIS 201 (258)
T ss_pred CEEeCCccccccHHHHHHHHHHc--------CCceEEEEecCHHHHHHHHHhhccCCCceEEEEEEccCCC
Confidence 77777542 12234456777776 99998888888888888888876 5666788888766554
Done!