Query 026887
Match_columns 231
No_of_seqs 318 out of 1770
Neff 8.1
Searched_HMMs 46136
Date Fri Mar 29 14:07:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026887.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026887hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0910 Thioredoxin-like prote 99.9 7E-24 1.5E-28 163.6 11.3 105 94-201 44-149 (150)
2 cd02985 TRX_CDSP32 TRX family, 99.9 1.5E-22 3.2E-27 149.6 14.5 99 98-199 1-102 (103)
3 KOG0907 Thioredoxin [Posttrans 99.9 1.1E-22 2.4E-27 150.8 13.0 89 108-199 17-105 (106)
4 cd02954 DIM1 Dim1 family; Dim1 99.9 3.2E-22 7E-27 149.6 14.6 100 99-199 1-110 (114)
5 PLN00410 U5 snRNP protein, DIM 99.9 9.8E-22 2.1E-26 152.3 13.7 111 94-204 5-124 (142)
6 PF00085 Thioredoxin: Thioredo 99.9 3.6E-21 7.7E-26 140.6 13.8 100 97-199 3-103 (103)
7 cd02948 TRX_NDPK TRX domain, T 99.9 6E-21 1.3E-25 140.7 13.8 98 95-198 2-101 (102)
8 cd02986 DLP Dim1 family, Dim1- 99.9 4.7E-21 1E-25 142.5 12.7 100 100-199 2-110 (114)
9 PHA02278 thioredoxin-like prot 99.9 6E-21 1.3E-25 141.0 13.1 93 98-194 2-99 (103)
10 cd03004 PDI_a_ERdj5_C PDIa fam 99.9 6.5E-21 1.4E-25 140.4 12.6 101 94-196 3-104 (104)
11 KOG0908 Thioredoxin-like prote 99.9 6.7E-21 1.5E-25 157.1 11.9 110 93-205 2-111 (288)
12 cd02999 PDI_a_ERp44_like PDIa 99.9 9.5E-21 2.1E-25 139.3 11.5 93 101-196 7-100 (100)
13 cd02989 Phd_like_TxnDC9 Phosdu 99.8 3.5E-20 7.6E-25 139.2 14.6 91 91-184 3-93 (113)
14 cd02956 ybbN ybbN protein fami 99.8 2.2E-20 4.8E-25 135.6 12.1 94 102-197 2-96 (96)
15 cd03003 PDI_a_ERdj5_N PDIa fam 99.8 2.5E-20 5.4E-25 136.8 12.2 98 93-195 2-100 (101)
16 cd03006 PDI_a_EFP1_N PDIa fami 99.8 2.6E-20 5.6E-25 139.8 11.7 101 92-195 9-112 (113)
17 cd02957 Phd_like Phosducin (Ph 99.8 7.4E-20 1.6E-24 137.3 13.5 91 91-184 3-94 (113)
18 COG3118 Thioredoxin domain-con 99.8 2.1E-20 4.6E-25 158.5 11.7 108 92-202 23-132 (304)
19 cd03065 PDI_b_Calsequestrin_N 99.8 1.1E-19 2.5E-24 137.5 13.3 102 95-200 11-119 (120)
20 cd02984 TRX_PICOT TRX domain, 99.8 1.5E-19 3.3E-24 131.2 12.9 95 99-196 1-96 (97)
21 PTZ00051 thioredoxin; Provisio 99.8 2.2E-19 4.9E-24 130.6 13.3 96 94-194 2-97 (98)
22 cd02996 PDI_a_ERp44 PDIa famil 99.8 2.1E-19 4.5E-24 133.5 12.3 99 94-196 3-108 (108)
23 cd02963 TRX_DnaJ TRX domain, D 99.8 1.5E-19 3.3E-24 135.3 11.4 98 99-198 10-110 (111)
24 cd02962 TMX2 TMX2 family; comp 99.8 4.5E-19 9.7E-24 139.6 14.5 90 93-184 29-126 (152)
25 PRK09381 trxA thioredoxin; Pro 99.8 1.2E-18 2.5E-23 129.5 14.2 103 94-200 5-108 (109)
26 cd02987 Phd_like_Phd Phosducin 99.8 1.4E-18 3E-23 140.2 14.8 106 91-198 61-173 (175)
27 PRK10996 thioredoxin 2; Provis 99.8 1.1E-18 2.3E-23 135.8 13.4 98 98-199 40-138 (139)
28 cd02994 PDI_a_TMX PDIa family, 99.8 2.2E-18 4.8E-23 126.2 12.7 97 94-198 3-101 (101)
29 cd03002 PDI_a_MPD1_like PDI fa 99.8 1.9E-18 4E-23 128.1 12.4 97 98-196 5-108 (109)
30 cd03005 PDI_a_ERp46 PDIa famil 99.8 3.5E-18 7.5E-23 124.9 12.5 93 99-196 6-102 (102)
31 cd02993 PDI_a_APS_reductase PD 99.8 3.3E-18 7.2E-23 127.4 12.0 99 98-196 6-109 (109)
32 cd02965 HyaE HyaE family; HyaE 99.8 2.4E-18 5.2E-23 127.9 10.9 90 99-192 16-108 (111)
33 PTZ00443 Thioredoxin domain-co 99.8 7.7E-18 1.7E-22 140.5 15.2 107 94-203 32-142 (224)
34 cd02950 TxlA TRX-like protein 99.8 1.3E-17 2.8E-22 130.2 15.0 100 101-203 11-113 (142)
35 cd03001 PDI_a_P5 PDIa family, 99.8 8.4E-18 1.8E-22 123.1 12.9 96 99-196 6-102 (103)
36 TIGR01126 pdi_dom protein disu 99.8 6.6E-18 1.4E-22 123.1 12.0 97 99-199 2-101 (102)
37 cd02953 DsbDgamma DsbD gamma f 99.8 2.9E-18 6.4E-23 126.4 9.4 94 101-197 2-104 (104)
38 TIGR01068 thioredoxin thioredo 99.8 2.3E-17 4.9E-22 119.8 13.2 98 99-199 2-100 (101)
39 cd02997 PDI_a_PDIR PDIa family 99.8 2E-17 4.3E-22 121.2 12.6 97 95-196 3-104 (104)
40 cd02949 TRX_NTR TRX domain, no 99.7 3.9E-17 8.4E-22 119.0 12.4 92 103-197 5-97 (97)
41 cd02995 PDI_a_PDI_a'_C PDIa fa 99.7 3.4E-17 7.4E-22 119.8 10.9 96 98-196 5-104 (104)
42 cd02975 PfPDO_like_N Pyrococcu 99.7 5.7E-17 1.2E-21 121.7 12.1 95 103-201 15-111 (113)
43 TIGR01295 PedC_BrcD bacterioci 99.7 9.8E-17 2.1E-21 122.1 13.2 96 98-197 11-121 (122)
44 cd02998 PDI_a_ERp38 PDIa famil 99.7 3.6E-17 7.7E-22 119.8 10.4 96 99-196 6-105 (105)
45 cd02952 TRP14_like Human TRX-r 99.7 4.3E-17 9.4E-22 123.1 10.9 97 96-195 5-117 (119)
46 cd02961 PDI_a_family Protein D 99.7 7.2E-17 1.6E-21 116.4 10.8 94 99-195 4-100 (101)
47 cd02988 Phd_like_VIAF Phosduci 99.7 1.3E-16 2.8E-21 130.4 13.4 103 91-198 81-190 (192)
48 cd03000 PDI_a_TMX3 PDIa family 99.7 9.5E-17 2.1E-21 118.4 11.0 93 101-199 7-103 (104)
49 cd02951 SoxW SoxW family; SoxW 99.7 1.7E-16 3.7E-21 120.8 12.4 100 100-202 3-121 (125)
50 TIGR00424 APS_reduc 5'-adenyly 99.7 1.7E-16 3.7E-21 144.6 14.0 104 95-198 353-461 (463)
51 PTZ00062 glutaredoxin; Provisi 99.7 2.1E-16 4.6E-21 129.9 12.3 93 98-202 4-96 (204)
52 PLN02309 5'-adenylylsulfate re 99.7 3.6E-16 7.7E-21 142.4 13.9 106 93-199 346-456 (457)
53 cd02992 PDI_a_QSOX PDIa family 99.7 3.4E-16 7.4E-21 117.7 11.5 78 98-176 6-89 (114)
54 cd03007 PDI_a_ERp29_N PDIa fam 99.7 4.2E-16 9E-21 117.0 10.4 98 97-199 5-115 (116)
55 cd02947 TRX_family TRX family; 99.7 7.7E-16 1.7E-20 108.9 11.1 91 102-196 2-92 (93)
56 KOG0190 Protein disulfide isom 99.7 2.4E-16 5.2E-21 143.2 9.9 106 92-201 24-133 (493)
57 PRK00293 dipZ thiol:disulfide 99.6 3.7E-15 7.9E-20 140.2 13.0 107 92-199 452-569 (571)
58 PTZ00102 disulphide isomerase; 99.6 3.3E-15 7.1E-20 137.4 12.2 105 95-201 359-466 (477)
59 TIGR01130 ER_PDI_fam protein d 99.6 6.3E-15 1.4E-19 134.5 13.7 102 97-201 5-110 (462)
60 PTZ00102 disulphide isomerase; 99.6 7.9E-15 1.7E-19 134.9 14.3 102 95-201 34-139 (477)
61 cd02982 PDI_b'_family Protein 99.6 1.1E-14 2.3E-19 106.7 10.4 88 112-199 12-102 (103)
62 KOG0190 Protein disulfide isom 99.6 4.8E-15 1E-19 134.8 8.0 102 96-201 369-474 (493)
63 COG4232 Thiol:disulfide interc 99.6 4.5E-15 9.7E-20 136.3 6.8 104 95-199 457-567 (569)
64 KOG4277 Uncharacterized conser 99.5 9.8E-15 2.1E-19 123.9 7.5 86 112-200 43-132 (468)
65 TIGR02740 TraF-like TraF-like 99.5 1.4E-13 3E-18 118.3 14.7 96 105-201 159-265 (271)
66 PHA02125 thioredoxin-like prot 99.5 5.6E-14 1.2E-18 97.8 9.8 72 116-196 2-73 (75)
67 cd02959 ERp19 Endoplasmic reti 99.5 1.5E-14 3.2E-19 109.3 7.1 90 111-200 18-113 (117)
68 TIGR02187 GlrX_arch Glutaredox 99.5 1.2E-13 2.6E-18 114.9 12.7 91 110-202 17-113 (215)
69 TIGR00411 redox_disulf_1 small 99.5 1.6E-13 3.5E-18 96.3 10.7 79 115-199 2-81 (82)
70 cd02955 SSP411 TRX domain, SSP 99.5 2.1E-13 4.5E-18 103.9 11.1 98 100-199 5-118 (124)
71 TIGR02738 TrbB type-F conjugat 99.5 2.5E-13 5.3E-18 107.2 11.7 86 112-199 50-152 (153)
72 TIGR02187 GlrX_arch Glutaredox 99.5 7.7E-13 1.7E-17 110.1 12.2 90 104-198 125-214 (215)
73 TIGR00412 redox_disulf_2 small 99.5 5.9E-13 1.3E-17 92.9 9.2 73 116-196 2-75 (76)
74 cd03008 TryX_like_RdCVF Trypar 99.5 7.1E-13 1.5E-17 103.7 10.6 77 107-184 20-130 (146)
75 TIGR01130 ER_PDI_fam protein d 99.5 4E-13 8.6E-18 122.6 10.6 101 97-201 350-455 (462)
76 PRK15412 thiol:disulfide inter 99.4 1.9E-12 4.1E-17 105.3 12.3 89 111-202 67-178 (185)
77 PRK14018 trifunctional thiored 99.4 1.9E-12 4.1E-17 119.7 13.2 88 111-199 55-172 (521)
78 KOG0912 Thiol-disulfide isomer 99.4 9.4E-13 2E-17 111.9 8.6 98 100-201 3-107 (375)
79 TIGR00385 dsbE periplasmic pro 99.4 3.5E-12 7.6E-17 102.5 11.4 88 111-201 62-172 (173)
80 PF13905 Thioredoxin_8: Thiore 99.4 3.2E-12 6.9E-17 92.3 9.8 65 112-176 1-93 (95)
81 cd03009 TryX_like_TryX_NRX Try 99.4 2.6E-12 5.6E-17 98.3 9.7 72 108-180 14-113 (131)
82 cd02973 TRX_GRX_like Thioredox 99.4 1.9E-12 4.2E-17 87.6 7.7 57 115-171 2-58 (67)
83 PF13098 Thioredoxin_2: Thiore 99.4 1.2E-12 2.6E-17 97.2 7.2 85 111-196 4-112 (112)
84 cd02964 TryX_like_family Trypa 99.4 3E-12 6.5E-17 98.3 9.6 74 108-182 13-115 (132)
85 cd03010 TlpA_like_DsbE TlpA-li 99.4 6E-12 1.3E-16 95.7 10.8 77 108-185 21-120 (127)
86 KOG0191 Thioredoxin/protein di 99.3 4.9E-12 1.1E-16 113.9 10.2 91 112-204 47-138 (383)
87 PRK03147 thiol-disulfide oxido 99.3 1.9E-11 4.1E-16 97.6 12.3 89 110-199 59-171 (173)
88 cd03026 AhpF_NTD_C TRX-GRX-lik 99.3 1.8E-11 3.8E-16 88.0 10.8 70 105-176 5-74 (89)
89 cd02966 TlpA_like_family TlpA- 99.3 1.7E-11 3.6E-16 89.8 10.2 73 111-183 18-115 (116)
90 PLN02919 haloacid dehalogenase 99.3 3.1E-11 6.7E-16 120.7 12.1 91 110-201 418-537 (1057)
91 PRK13728 conjugal transfer pro 99.3 7.4E-11 1.6E-15 95.1 12.0 85 116-202 73-173 (181)
92 cd03011 TlpA_like_ScsD_MtbDsbE 99.3 4.8E-11 1E-15 90.0 10.2 82 111-195 19-121 (123)
93 cd03012 TlpA_like_DipZ_like Tl 99.3 6.9E-11 1.5E-15 89.9 10.6 75 110-184 21-124 (126)
94 cd02960 AGR Anterior Gradient 99.3 4.1E-11 8.8E-16 91.7 9.2 82 102-184 11-98 (130)
95 cd02958 UAS UAS family; UAS is 99.2 2.6E-10 5.7E-15 85.4 11.7 90 111-201 16-112 (114)
96 PRK11509 hydrogenase-1 operon 99.2 3.5E-10 7.6E-15 86.6 12.1 97 101-201 25-125 (132)
97 PF08534 Redoxin: Redoxin; In 99.2 1.5E-10 3.2E-15 90.0 10.0 87 108-194 24-144 (146)
98 KOG1672 ATP binding protein [P 99.2 2.4E-10 5.1E-15 91.6 10.2 112 85-199 59-177 (211)
99 KOG0191 Thioredoxin/protein di 99.2 1.2E-10 2.6E-15 104.8 9.6 105 96-202 147-254 (383)
100 cd02967 mauD Methylamine utili 99.2 2.1E-10 4.5E-15 85.3 8.9 64 112-175 21-105 (114)
101 KOG1731 FAD-dependent sulfhydr 99.2 1.8E-11 4E-16 111.8 3.6 80 95-175 41-126 (606)
102 PF13899 Thioredoxin_7: Thiore 99.2 1.7E-10 3.6E-15 81.4 7.7 62 112-174 17-82 (82)
103 PTZ00056 glutathione peroxidas 99.1 5.5E-10 1.2E-14 91.9 10.2 95 108-203 35-181 (199)
104 TIGR02661 MauD methylamine deh 99.1 1.3E-09 2.8E-14 88.9 11.5 87 111-200 73-179 (189)
105 PLN02399 phospholipid hydroper 99.1 1.3E-09 2.9E-14 91.7 11.4 94 107-201 94-235 (236)
106 TIGR01626 ytfJ_HI0045 conserve 99.1 1.3E-09 2.9E-14 88.2 10.9 88 108-198 55-178 (184)
107 PF02114 Phosducin: Phosducin; 99.1 1E-09 2.3E-14 93.8 10.2 108 91-200 124-238 (265)
108 smart00594 UAS UAS domain. 99.0 4.6E-09 9.9E-14 79.7 11.0 84 112-196 27-121 (122)
109 COG0526 TrxA Thiol-disulfide i 99.0 2.3E-09 5E-14 77.7 8.9 72 112-184 32-107 (127)
110 cd02969 PRX_like1 Peroxiredoxi 99.0 7.4E-09 1.6E-13 82.8 12.2 91 111-202 24-154 (171)
111 PLN02412 probable glutathione 99.0 4.3E-09 9.4E-14 84.2 10.9 93 108-201 25-165 (167)
112 PF13728 TraF: F plasmid trans 99.0 1.5E-08 3.3E-13 84.3 12.7 94 102-196 110-214 (215)
113 PF14595 Thioredoxin_9: Thiore 99.0 4.9E-09 1.1E-13 80.4 9.0 95 101-198 30-127 (129)
114 TIGR02540 gpx7 putative glutat 98.9 7.8E-09 1.7E-13 81.3 10.2 45 107-151 17-63 (153)
115 cd00340 GSH_Peroxidase Glutath 98.9 7.3E-09 1.6E-13 81.4 8.8 44 108-152 18-63 (152)
116 TIGR02196 GlrX_YruB Glutaredox 98.9 1.4E-08 3.1E-13 68.9 8.5 69 116-197 2-74 (74)
117 KOG3414 Component of the U4/U6 98.9 3E-08 6.5E-13 74.2 10.6 107 95-201 6-121 (142)
118 KOG0914 Thioredoxin-like prote 98.9 3.9E-09 8.4E-14 86.2 6.3 91 93-184 125-223 (265)
119 cd01659 TRX_superfamily Thiore 98.8 2.1E-08 4.7E-13 64.6 7.8 60 116-175 1-63 (69)
120 PRK00522 tpx lipid hydroperoxi 98.8 6E-08 1.3E-12 77.6 11.4 72 108-180 40-144 (167)
121 PF06110 DUF953: Eukaryotic pr 98.8 3.9E-08 8.5E-13 74.1 9.3 79 97-175 2-99 (119)
122 TIGR02200 GlrX_actino Glutared 98.8 4.7E-08 1E-12 67.2 7.8 70 116-197 2-76 (77)
123 TIGR02739 TraF type-F conjugat 98.8 1.8E-07 3.9E-12 79.5 12.8 98 103-201 141-249 (256)
124 PF00578 AhpC-TSA: AhpC/TSA fa 98.7 5.6E-08 1.2E-12 72.9 8.3 72 108-180 21-122 (124)
125 cd03017 PRX_BCP Peroxiredoxin 98.7 7.5E-08 1.6E-12 74.0 9.1 85 111-196 22-139 (140)
126 cd03014 PRX_Atyp2cys Peroxired 98.7 1.1E-07 2.5E-12 73.5 10.0 76 108-183 22-127 (143)
127 KOG2501 Thioredoxin, nucleored 98.7 3.4E-08 7.4E-13 77.3 7.0 66 111-176 32-126 (157)
128 PTZ00256 glutathione peroxidas 98.7 1.6E-07 3.5E-12 76.2 9.9 45 108-152 36-83 (183)
129 cd03015 PRX_Typ2cys Peroxiredo 98.7 2.3E-07 5E-12 74.4 10.5 92 110-201 27-158 (173)
130 PF13192 Thioredoxin_3: Thiore 98.7 3.8E-07 8.2E-12 63.3 9.7 74 117-197 3-76 (76)
131 PF03190 Thioredox_DsbH: Prote 98.6 3E-07 6.6E-12 72.8 10.0 79 100-180 27-117 (163)
132 PF02966 DIM1: Mitosis protein 98.6 4.8E-07 1E-11 68.6 10.4 105 95-200 3-117 (133)
133 KOG0911 Glutaredoxin-related p 98.6 3.7E-08 8.1E-13 80.9 4.7 103 94-203 3-105 (227)
134 PRK13703 conjugal pilus assemb 98.6 8.4E-07 1.8E-11 75.1 12.5 97 104-201 135-242 (248)
135 cd03018 PRX_AhpE_like Peroxire 98.6 4.5E-07 9.7E-12 70.4 10.1 86 111-196 26-147 (149)
136 TIGR03137 AhpC peroxiredoxin. 98.6 5.5E-07 1.2E-11 73.3 11.0 93 108-201 27-157 (187)
137 PRK13190 putative peroxiredoxi 98.6 7.2E-07 1.6E-11 73.6 10.5 91 110-201 25-155 (202)
138 COG2143 Thioredoxin-related pr 98.5 9.1E-07 2E-11 68.9 10.1 88 111-199 41-148 (182)
139 cd02970 PRX_like2 Peroxiredoxi 98.5 7E-07 1.5E-11 69.0 9.5 43 112-154 24-68 (149)
140 PRK10382 alkyl hydroperoxide r 98.5 1.8E-06 3.8E-11 70.4 11.7 92 108-200 27-156 (187)
141 KOG0913 Thiol-disulfide isomer 98.5 2.8E-08 6E-13 82.1 0.7 98 97-201 28-127 (248)
142 KOG3425 Uncharacterized conser 98.5 8.7E-07 1.9E-11 65.9 8.4 80 97-176 9-106 (128)
143 PRK09437 bcp thioredoxin-depen 98.5 1.4E-06 3.1E-11 68.2 10.2 89 108-197 26-150 (154)
144 PRK11200 grxA glutaredoxin 1; 98.5 1.5E-06 3.3E-11 61.5 9.2 76 115-200 2-83 (85)
145 TIGR02180 GRX_euk Glutaredoxin 98.4 1.1E-06 2.3E-11 61.5 6.1 58 116-176 1-63 (84)
146 cd02971 PRX_family Peroxiredox 98.4 4.1E-06 9E-11 64.1 9.8 74 111-184 21-128 (140)
147 PRK10606 btuE putative glutath 98.4 3.1E-06 6.8E-11 68.7 9.5 45 107-152 20-66 (183)
148 cd02968 SCO SCO (an acronym fo 98.4 2.1E-06 4.6E-11 65.9 8.0 43 111-153 21-69 (142)
149 PRK15000 peroxidase; Provision 98.3 5.6E-06 1.2E-10 68.2 10.8 88 111-199 33-161 (200)
150 PF11009 DUF2847: Protein of u 98.3 9.5E-06 2.1E-10 59.7 10.7 97 95-192 2-104 (105)
151 cd02976 NrdH NrdH-redoxin (Nrd 98.3 5.7E-06 1.2E-10 55.7 8.5 67 116-195 2-72 (73)
152 cd02991 UAS_ETEA UAS family, E 98.3 2.3E-05 5E-10 59.0 12.4 88 111-201 16-114 (116)
153 TIGR02183 GRXA Glutaredoxin, G 98.3 7.7E-06 1.7E-10 58.1 8.7 75 116-200 2-82 (86)
154 PTZ00137 2-Cys peroxiredoxin; 98.2 1.8E-05 3.8E-10 67.7 11.9 89 111-200 97-225 (261)
155 PF13848 Thioredoxin_6: Thiore 98.2 2.8E-05 6.1E-10 62.1 12.6 112 84-198 68-184 (184)
156 PRK13599 putative peroxiredoxi 98.2 1.5E-05 3.2E-10 66.4 11.1 88 111-199 27-155 (215)
157 cd03016 PRX_1cys Peroxiredoxin 98.2 1.3E-05 2.9E-10 66.0 10.6 88 113-201 26-155 (203)
158 PRK13189 peroxiredoxin; Provis 98.2 2.1E-05 4.6E-10 65.8 10.4 89 111-200 34-163 (222)
159 TIGR03143 AhpF_homolog putativ 98.2 2.6E-05 5.5E-10 73.7 12.0 88 103-196 467-554 (555)
160 PRK10877 protein disulfide iso 98.1 8.9E-06 1.9E-10 68.5 7.7 81 111-199 106-230 (232)
161 PRK13191 putative peroxiredoxi 98.1 3.3E-05 7.1E-10 64.3 11.0 88 111-199 32-160 (215)
162 PRK15317 alkyl hydroperoxide r 98.1 4.4E-05 9.5E-10 71.5 11.9 93 101-199 105-197 (517)
163 PTZ00253 tryparedoxin peroxida 98.1 2.8E-05 6.2E-10 63.8 9.4 92 108-200 32-164 (199)
164 cd03023 DsbA_Com1_like DsbA fa 98.0 3.7E-05 8E-10 59.4 9.2 36 112-147 5-40 (154)
165 cd02983 P5_C P5 family, C-term 98.0 0.00052 1.1E-08 52.6 14.0 109 92-203 2-118 (130)
166 PRK11657 dsbG disulfide isomer 97.9 7.3E-05 1.6E-09 63.7 9.6 83 112-197 117-249 (251)
167 TIGR02190 GlrX-dom Glutaredoxi 97.9 0.00012 2.7E-09 50.9 8.4 70 112-196 6-78 (79)
168 cd03020 DsbA_DsbC_DsbG DsbA fa 97.9 6.1E-05 1.3E-09 61.6 7.9 76 112-196 77-197 (197)
169 TIGR03143 AhpF_homolog putativ 97.8 0.00013 2.7E-09 69.0 10.5 121 97-221 351-472 (555)
170 cd03419 GRX_GRXh_1_2_like Glut 97.8 6.4E-05 1.4E-09 52.2 6.4 69 116-197 2-75 (82)
171 TIGR03140 AhpF alkyl hydropero 97.8 0.00025 5.4E-09 66.4 12.0 92 102-199 107-198 (515)
172 KOG3171 Conserved phosducin-li 97.8 0.00011 2.3E-09 60.3 8.2 106 92-199 138-250 (273)
173 PF00462 Glutaredoxin: Glutare 97.8 9.1E-05 2E-09 48.6 6.4 51 116-171 1-55 (60)
174 TIGR02194 GlrX_NrdH Glutaredox 97.8 0.00013 2.9E-09 49.7 7.0 66 117-194 2-70 (72)
175 PRK10329 glutaredoxin-like pro 97.7 0.00043 9.2E-09 48.6 9.2 73 116-201 3-78 (81)
176 PHA03050 glutaredoxin; Provisi 97.7 0.00026 5.6E-09 52.6 7.5 59 116-176 15-78 (108)
177 cd02981 PDI_b_family Protein D 97.6 0.0009 1.9E-08 47.9 10.1 94 95-198 2-96 (97)
178 PF05768 DUF836: Glutaredoxin- 97.6 0.0002 4.3E-09 50.2 6.1 78 116-197 2-81 (81)
179 cd02066 GRX_family Glutaredoxi 97.6 0.00027 5.8E-09 47.0 6.2 51 116-171 2-56 (72)
180 cd03027 GRX_DEP Glutaredoxin ( 97.6 0.00033 7.3E-09 47.8 6.5 54 116-176 3-60 (73)
181 PF13462 Thioredoxin_4: Thiore 97.5 0.00076 1.7E-08 52.6 9.2 81 111-198 11-162 (162)
182 cd03418 GRX_GRXb_1_3_like Glut 97.5 0.00072 1.6E-08 46.0 7.9 54 116-176 2-60 (75)
183 cd03029 GRX_hybridPRX5 Glutare 97.5 0.0008 1.7E-08 45.7 7.9 66 116-196 3-71 (72)
184 TIGR02189 GlrX-like_plant Glut 97.5 0.00045 9.8E-09 50.4 6.9 54 116-176 10-70 (99)
185 PRK10954 periplasmic protein d 97.4 0.0007 1.5E-08 55.9 8.3 39 112-150 37-79 (207)
186 PF07449 HyaE: Hydrogenase-1 e 97.4 0.00034 7.4E-09 51.7 5.6 81 100-184 16-100 (107)
187 TIGR00365 monothiol glutaredox 97.4 0.0014 3.1E-08 47.5 8.9 63 101-171 3-73 (97)
188 TIGR02181 GRX_bact Glutaredoxi 97.4 0.00036 7.8E-09 48.3 5.5 51 116-171 1-55 (79)
189 KOG3170 Conserved phosducin-li 97.3 0.0029 6.2E-08 51.6 9.9 105 92-200 91-201 (240)
190 COG0695 GrxC Glutaredoxin and 97.3 0.002 4.3E-08 45.1 7.6 51 116-171 3-59 (80)
191 PF01216 Calsequestrin: Calseq 97.2 0.0071 1.5E-07 53.2 12.3 101 95-201 36-145 (383)
192 cd03019 DsbA_DsbA DsbA family, 97.2 0.0024 5.3E-08 50.6 8.8 35 112-146 15-50 (178)
193 cd03072 PDI_b'_ERp44 PDIb' fam 97.2 0.004 8.7E-08 46.3 9.2 98 100-201 6-109 (111)
194 cd02972 DsbA_family DsbA famil 97.1 0.0022 4.7E-08 45.0 6.9 57 116-172 1-90 (98)
195 KOG2603 Oligosaccharyltransfer 97.1 0.0047 1E-07 53.5 9.6 111 91-202 39-168 (331)
196 cd03028 GRX_PICOT_like Glutare 97.0 0.0041 9E-08 44.3 7.5 57 113-176 8-72 (90)
197 PRK10824 glutaredoxin-4; Provi 97.0 0.0045 9.8E-08 46.4 7.6 66 101-176 6-79 (115)
198 PF07912 ERp29_N: ERp29, N-ter 96.9 0.05 1.1E-06 41.1 12.2 98 100-201 11-120 (126)
199 COG1225 Bcp Peroxiredoxin [Pos 96.8 0.022 4.7E-07 45.0 10.6 92 107-199 25-155 (157)
200 cd03073 PDI_b'_ERp72_ERp57 PDI 96.8 0.017 3.7E-07 43.0 9.2 85 113-199 16-110 (111)
201 PRK10638 glutaredoxin 3; Provi 96.7 0.0078 1.7E-07 42.0 6.5 51 116-171 4-58 (83)
202 COG1331 Highly conserved prote 96.5 0.0058 1.2E-07 58.2 6.5 76 99-176 32-119 (667)
203 PF13848 Thioredoxin_6: Thiore 96.5 0.03 6.6E-07 44.4 9.4 68 130-201 8-76 (184)
204 PRK12759 bifunctional gluaredo 96.4 0.0067 1.5E-07 55.3 5.8 51 116-171 4-66 (410)
205 PTZ00062 glutaredoxin; Provisi 96.3 0.037 7.9E-07 45.7 9.1 57 113-176 113-177 (204)
206 cd03066 PDI_b_Calsequestrin_mi 96.2 0.11 2.5E-06 37.6 10.5 97 94-199 2-100 (102)
207 KOG1752 Glutaredoxin and relat 96.2 0.042 9.1E-07 40.5 7.9 66 102-176 6-76 (104)
208 cd02974 AhpF_NTD_N Alkyl hydro 95.7 0.29 6.2E-06 35.3 10.4 85 100-197 7-91 (94)
209 cd03067 PDI_b_PDIR_N PDIb fami 95.7 0.15 3.3E-06 37.2 8.8 98 95-197 4-109 (112)
210 PF13743 Thioredoxin_5: Thiore 95.6 0.035 7.7E-07 44.6 6.2 26 118-143 2-27 (176)
211 COG1651 DsbG Protein-disulfide 95.3 0.12 2.5E-06 43.4 8.5 37 156-199 206-242 (244)
212 PRK15317 alkyl hydroperoxide r 95.1 0.13 2.9E-06 48.2 9.2 90 100-202 7-96 (517)
213 cd03013 PRX5_like Peroxiredoxi 94.9 0.053 1.2E-06 42.6 5.1 51 113-163 31-88 (155)
214 cd03031 GRX_GRX_like Glutaredo 94.9 0.16 3.4E-06 39.8 7.5 51 116-171 2-66 (147)
215 PF00837 T4_deiodinase: Iodoth 94.7 0.3 6.6E-06 41.1 9.2 59 91-151 81-142 (237)
216 TIGR03140 AhpF alkyl hydropero 94.7 0.24 5.3E-06 46.4 9.6 107 100-221 7-113 (515)
217 cd03069 PDI_b_ERp57 PDIb famil 94.6 0.54 1.2E-05 34.2 9.4 94 95-199 3-103 (104)
218 PRK09301 circadian clock prote 94.3 0.25 5.5E-06 36.1 6.9 84 112-197 5-90 (103)
219 TIGR02654 circ_KaiB circadian 93.9 0.29 6.2E-06 34.8 6.3 78 113-192 3-82 (87)
220 cd02978 KaiB_like KaiB-like fa 93.4 0.38 8.2E-06 32.9 6.0 58 115-172 3-62 (72)
221 PHA03075 glutaredoxin-like pro 93.3 1 2.2E-05 33.7 8.6 83 113-199 2-114 (123)
222 cd03068 PDI_b_ERp72 PDIb famil 92.0 3.6 7.9E-05 30.1 10.8 98 94-199 2-107 (107)
223 cd03040 GST_N_mPGES2 GST_N fam 91.0 3.4 7.4E-05 27.7 8.8 75 116-200 2-76 (77)
224 PF09673 TrbC_Ftype: Type-F co 90.7 2.3 4.9E-05 31.7 8.1 71 100-174 10-80 (113)
225 COG3019 Predicted metal-bindin 90.2 2.5 5.3E-05 32.7 7.9 76 113-200 25-104 (149)
226 cd03036 ArsC_like Arsenate Red 89.5 0.28 6E-06 36.3 2.3 52 117-173 2-57 (111)
227 KOG2792 Putative cytochrome C 89.4 3.4 7.3E-05 35.3 8.9 94 109-202 136-277 (280)
228 COG3634 AhpF Alkyl hydroperoxi 88.9 2.8 6.1E-05 37.7 8.4 74 101-176 105-178 (520)
229 cd02977 ArsC_family Arsenate R 87.3 0.6 1.3E-05 33.9 2.8 32 117-153 2-33 (105)
230 cd03060 GST_N_Omega_like GST_N 86.2 3.4 7.3E-05 27.4 5.9 52 117-171 2-54 (71)
231 PF06053 DUF929: Domain of unk 86.2 3.4 7.4E-05 35.2 7.1 69 93-174 45-114 (249)
232 cd03041 GST_N_2GST_N GST_N fam 85.6 7.5 0.00016 26.2 7.6 71 116-199 2-76 (77)
233 TIGR02742 TrbC_Ftype type-F co 85.5 6.3 0.00014 30.1 7.7 44 153-200 59-112 (130)
234 KOG2507 Ubiquitin regulatory p 84.3 12 0.00027 34.2 10.0 88 112-200 18-111 (506)
235 KOG2640 Thioredoxin [Function 84.1 0.61 1.3E-05 40.7 1.7 96 103-201 67-163 (319)
236 TIGR01617 arsC_related transcr 84.0 2.1 4.6E-05 31.7 4.5 33 117-154 2-34 (117)
237 PRK01655 spxA transcriptional 83.6 2 4.3E-05 32.8 4.2 34 116-154 2-35 (131)
238 COG2761 FrnE Predicted dithiol 83.6 2.9 6.4E-05 35.0 5.5 42 156-203 175-216 (225)
239 cd03035 ArsC_Yffb Arsenate Red 81.8 1.9 4.1E-05 31.6 3.4 41 117-162 2-49 (105)
240 PF02630 SCO1-SenC: SCO1/SenC; 81.4 4.6 9.9E-05 32.2 5.8 54 109-162 49-110 (174)
241 PF06764 DUF1223: Protein of u 81.0 30 0.00064 28.5 10.5 81 116-202 2-100 (202)
242 COG0450 AhpC Peroxiredoxin [Po 80.9 23 0.00049 29.0 9.5 88 111-199 32-160 (194)
243 COG4545 Glutaredoxin-related p 80.7 5 0.00011 27.7 4.8 54 117-176 5-74 (85)
244 cd00570 GST_N_family Glutathio 79.7 2.3 4.9E-05 27.0 2.9 51 118-171 3-55 (71)
245 cd03037 GST_N_GRX2 GST_N famil 79.2 6.6 0.00014 25.8 5.2 51 118-171 3-53 (71)
246 cd03051 GST_N_GTT2_like GST_N 79.1 5.2 0.00011 26.1 4.7 52 117-171 2-57 (74)
247 COG5429 Uncharacterized secret 78.6 10 0.00022 32.0 6.9 89 113-207 42-148 (261)
248 cd03074 PDI_b'_Calsequestrin_C 78.3 25 0.00054 26.1 11.2 99 101-199 9-119 (120)
249 PF07689 KaiB: KaiB domain; I 76.5 0.72 1.6E-05 32.4 -0.3 52 119-170 3-56 (82)
250 cd03059 GST_N_SspA GST_N famil 76.4 12 0.00026 24.4 5.8 51 117-170 2-53 (73)
251 PF04592 SelP_N: Selenoprotein 75.5 6.6 0.00014 33.1 5.1 47 106-152 20-71 (238)
252 cd03032 ArsC_Spx Arsenate Redu 75.4 5.8 0.00012 29.3 4.4 34 116-154 2-35 (115)
253 PRK12559 transcriptional regul 75.3 4.8 0.0001 30.7 4.0 33 116-153 2-34 (131)
254 PF01323 DSBA: DSBA-like thior 75.1 7.7 0.00017 30.7 5.4 37 154-196 156-192 (193)
255 COG3531 Predicted protein-disu 73.7 7.7 0.00017 31.9 4.9 45 155-201 164-210 (212)
256 PF08806 Sep15_SelM: Sep15/Sel 73.4 5.5 0.00012 27.6 3.5 36 165-200 41-76 (78)
257 cd03045 GST_N_Delta_Epsilon GS 71.2 14 0.00031 24.2 5.2 51 117-170 2-56 (74)
258 PF01323 DSBA: DSBA-like thior 71.0 6.6 0.00014 31.1 4.1 34 115-148 1-34 (193)
259 COG0386 BtuE Glutathione perox 69.7 54 0.0012 26.0 10.1 47 106-153 19-67 (162)
260 PRK13344 spxA transcriptional 67.1 9.8 0.00021 29.0 4.1 33 116-153 2-34 (132)
261 PF13417 GST_N_3: Glutathione 65.8 36 0.00079 22.5 9.1 70 119-201 2-72 (75)
262 PF00255 GSHPx: Glutathione pe 65.0 18 0.0004 26.6 5.0 46 107-153 16-63 (108)
263 COG1999 Uncharacterized protei 64.9 41 0.00089 27.6 7.7 55 109-163 64-127 (207)
264 cd03024 DsbA_FrnE DsbA family, 63.1 8 0.00017 30.9 3.1 38 154-197 164-201 (201)
265 PF04134 DUF393: Protein of un 62.1 12 0.00026 27.1 3.7 56 119-175 2-60 (114)
266 cd03055 GST_N_Omega GST_N fami 61.4 30 0.00066 23.9 5.5 53 116-171 19-72 (89)
267 KOG1422 Intracellular Cl- chan 56.4 81 0.0018 26.3 7.7 67 123-202 20-87 (221)
268 KOG0852 Alkyl hydroperoxide re 56.2 1.1E+02 0.0024 24.9 8.8 92 107-199 28-160 (196)
269 PF06953 ArsD: Arsenical resis 55.5 70 0.0015 24.2 6.8 55 142-201 39-103 (123)
270 KOG1651 Glutathione peroxidase 55.0 58 0.0012 26.1 6.5 84 107-201 29-126 (171)
271 PRK13730 conjugal transfer pil 54.8 87 0.0019 25.9 7.7 41 154-200 151-191 (212)
272 cd03025 DsbA_FrnE_like DsbA fa 51.4 12 0.00025 29.7 2.2 22 155-176 159-180 (193)
273 PF09822 ABC_transp_aux: ABC-t 51.3 1.5E+02 0.0032 25.0 13.3 62 103-165 16-88 (271)
274 cd03025 DsbA_FrnE_like DsbA fa 51.2 22 0.00047 28.1 3.8 27 116-142 3-29 (193)
275 cd03056 GST_N_4 GST_N family, 50.5 65 0.0014 20.6 5.5 51 118-171 3-57 (73)
276 cd03022 DsbA_HCCA_Iso DsbA fam 50.1 16 0.00035 28.8 2.8 17 155-171 157-173 (192)
277 COG0821 gcpE 1-hydroxy-2-methy 49.9 38 0.00082 30.2 5.2 103 94-203 239-354 (361)
278 COG0278 Glutaredoxin-related p 49.4 1E+02 0.0022 22.6 7.5 70 101-176 6-80 (105)
279 cd03021 DsbA_GSTK DsbA family, 44.0 18 0.00038 29.5 2.2 28 156-184 170-197 (209)
280 COG2077 Tpx Peroxiredoxin [Pos 39.9 89 0.0019 24.6 5.3 67 108-174 40-110 (158)
281 PF06491 Disulph_isomer: Disul 39.9 1.7E+02 0.0037 22.4 7.5 104 92-199 16-131 (136)
282 PF14424 Toxin-deaminase: The 39.8 1.3E+02 0.0029 22.9 6.3 31 117-150 99-131 (133)
283 cd03033 ArsC_15kD Arsenate Red 39.0 39 0.00084 25.0 3.2 33 116-153 2-34 (113)
284 COG5494 Predicted thioredoxin/ 34.4 2E+02 0.0044 24.1 6.8 72 119-199 16-87 (265)
285 PF11287 DUF3088: Protein of u 32.7 81 0.0017 23.5 3.9 51 123-173 23-76 (112)
286 cd03034 ArsC_ArsC Arsenate Red 32.7 59 0.0013 23.8 3.3 32 117-153 2-33 (112)
287 TIGR00014 arsC arsenate reduct 32.7 58 0.0013 23.9 3.3 33 117-154 2-34 (114)
288 PF09499 RE_ApaLI: ApaLI-like 31.9 1.5E+02 0.0032 24.0 5.5 57 87-143 118-174 (191)
289 cd02990 UAS_FAF1 UAS family, F 30.7 2.5E+02 0.0054 21.6 12.4 86 112-200 21-133 (136)
290 KOG2244 Highly conserved prote 30.7 40 0.00087 32.2 2.4 74 99-174 101-186 (786)
291 cd03052 GST_N_GDAP1 GST_N fami 29.7 1.7E+02 0.0036 19.3 5.0 51 117-170 2-56 (73)
292 PRK00366 ispG 4-hydroxy-3-meth 29.4 89 0.0019 28.1 4.3 74 124-199 271-356 (360)
293 PF10726 DUF2518: Protein of f 29.3 2.1E+02 0.0045 22.3 5.8 46 166-211 70-115 (145)
294 cd00307 RuBisCO_small_like Rib 28.2 61 0.0013 22.8 2.5 34 119-152 28-71 (84)
295 COG1393 ArsC Arsenate reductas 27.9 77 0.0017 23.6 3.2 22 116-137 3-24 (117)
296 cd03030 GRX_SH3BGR Glutaredoxi 27.2 2.3E+02 0.005 20.0 5.7 30 142-171 29-66 (92)
297 PF03960 ArsC: ArsC family; I 26.6 1.1E+02 0.0023 22.1 3.7 31 119-154 1-31 (110)
298 TIGR03439 methyl_EasF probable 26.6 3E+02 0.0065 24.3 7.2 56 112-170 76-133 (319)
299 KOG2868 Decapping enzyme compl 26.3 1.8E+02 0.0039 25.8 5.5 44 159-202 88-132 (335)
300 COG3011 Predicted thiol-disulf 26.2 3.1E+02 0.0067 21.2 6.5 64 112-176 6-71 (137)
301 COG1999 Uncharacterized protei 24.7 2.7E+02 0.0058 22.8 6.2 58 143-201 133-205 (207)
302 PF01216 Calsequestrin: Calseq 24.3 5.4E+02 0.012 23.3 11.2 103 92-203 146-250 (383)
303 PF14421 LmjF365940-deam: A di 23.1 91 0.002 25.3 2.9 29 123-154 156-184 (193)
304 KOG0911 Glutaredoxin-related p 22.9 2.1E+02 0.0046 24.0 5.2 60 112-176 138-203 (227)
305 cd03053 GST_N_Phi GST_N family 21.6 2.3E+02 0.0051 18.2 5.3 52 116-170 2-57 (76)
306 KOG2990 C2C2-type Zn-finger pr 21.3 1.3E+02 0.0028 26.2 3.7 31 102-132 30-63 (317)
307 KOG1364 Predicted ubiquitin re 20.9 1.4E+02 0.0031 26.7 3.9 56 146-201 135-190 (356)
308 COG2761 FrnE Predicted dithiol 20.7 2.5E+02 0.0054 23.6 5.2 31 113-143 4-35 (225)
309 COG4822 CbiK Cobalamin biosynt 20.5 1.5E+02 0.0033 24.9 3.8 84 112-202 3-103 (265)
310 PF00403 HMA: Heavy-metal-asso 20.3 2.3E+02 0.005 17.6 5.7 34 118-154 3-36 (62)
No 1
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=7e-24 Score=163.59 Aligned_cols=105 Identities=20% Similarity=0.448 Sum_probs=95.7
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q 026887 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (231)
Q Consensus 94 ~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~ 172 (231)
...+.+.++|++.+.++ +.||+|+|||+||+||+.+.|.++++..+|.| ++|++||+|++.+++.+|+|..+||+++|
T Consensus 44 ~~~~~s~~~~~~~Vi~S-~~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~g~~k~~kvdtD~~~ela~~Y~I~avPtvlvf 122 (150)
T KOG0910|consen 44 LFNVQSDSEFDDKVINS-DVPVLVDFHAEWCGPCKMLGPILEELVSEYAGKFKLYKVDTDEHPELAEDYEISAVPTVLVF 122 (150)
T ss_pred cccccCHHHHHHHHHcc-CCCEEEEEecCcCccHhHhhHHHHHHHHhhcCeEEEEEEccccccchHhhcceeeeeEEEEE
Confidence 45677899999998875 89999999999999999999999999999987 99999999999999999999999999999
Q ss_pred ECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 173 RGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 173 ~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
+||+ +.+++.|. .+.+.|+++|++.+.
T Consensus 123 knGe-~~d~~vG~-~~~~~l~~~i~k~l~ 149 (150)
T KOG0910|consen 123 KNGE-KVDRFVGA-VPKEQLRSLIKKFLK 149 (150)
T ss_pred ECCE-Eeeeeccc-CCHHHHHHHHHHHhc
Confidence 9987 77888875 456899999999864
No 2
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=99.90 E-value=1.5e-22 Score=149.57 Aligned_cols=99 Identities=26% Similarity=0.453 Sum_probs=88.4
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCH---HHHHHCCCCCCCEEEEEEC
Q 026887 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK---PMCKSLNVKVLPYFHFYRG 174 (231)
Q Consensus 98 ~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~---~l~~~~~i~~~Pt~~~~~~ 174 (231)
++.++|++.+.+.++++++|+|||+||++|+.+.|.+++++++++++.|++||+|++. +++++|+|.++||++||++
T Consensus 1 ~~~~~~~~~i~~~~~k~vvv~F~a~wC~~C~~~~p~l~~la~~~~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt~~~~~~ 80 (103)
T cd02985 1 HSVEELDEALKKAKGRLVVLEFALKHSGPSVKIYPTMVKLSRTCNDVVFLLVNGDENDSTMELCRREKIIEVPHFLFYKD 80 (103)
T ss_pred CCHHHHHHHHHHcCCCEEEEEEECCCCHhHHHHhHHHHHHHHHCCCCEEEEEECCCChHHHHHHHHcCCCcCCEEEEEeC
Confidence 3678999999887799999999999999999999999999999988999999999874 7999999999999999998
Q ss_pred CCceEEEEecCccCHHHHHHHHHHh
Q 026887 175 AHGQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 175 g~~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
|+ .+.++.| .++++|++.+.++
T Consensus 81 G~-~v~~~~G--~~~~~l~~~~~~~ 102 (103)
T cd02985 81 GE-KIHEEEG--IGPDELIGDVLYY 102 (103)
T ss_pred Ce-EEEEEeC--CCHHHHHHHHHhc
Confidence 76 7888887 6668888877653
No 3
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=1.1e-22 Score=150.77 Aligned_cols=89 Identities=43% Similarity=0.869 Sum_probs=81.2
Q ss_pred HhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCcc
Q 026887 108 SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLA 187 (231)
Q Consensus 108 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~ 187 (231)
...++++++|+|||+|||||+.+.|.+++++.+|+++.|++||+|++++++++++|..+||++||++|+ ++..+.| .
T Consensus 17 ~~~~~kliVvdF~a~wCgPCk~i~P~~~~La~~y~~v~Flkvdvde~~~~~~~~~V~~~PTf~f~k~g~-~~~~~vG--a 93 (106)
T KOG0907|consen 17 AEAGDKLVVVDFYATWCGPCKAIAPKFEKLAEKYPDVVFLKVDVDELEEVAKEFNVKAMPTFVFYKGGE-EVDEVVG--A 93 (106)
T ss_pred hhCCCCeEEEEEECCCCcchhhhhhHHHHHHHHCCCCEEEEEecccCHhHHHhcCceEeeEEEEEECCE-EEEEEec--C
Confidence 344479999999999999999999999999999999999999999999999999999999999999987 8888888 6
Q ss_pred CHHHHHHHHHHh
Q 026887 188 KFQKIKEAIALH 199 (231)
Q Consensus 188 ~~~~l~~~l~~~ 199 (231)
+.+++++.|+++
T Consensus 94 ~~~~l~~~i~~~ 105 (106)
T KOG0907|consen 94 NKAELEKKIAKH 105 (106)
T ss_pred CHHHHHHHHHhc
Confidence 667888888765
No 4
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=99.89 E-value=3.2e-22 Score=149.59 Aligned_cols=100 Identities=18% Similarity=0.241 Sum_probs=85.7
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCc
Q 026887 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHG 177 (231)
Q Consensus 99 s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~ 177 (231)
+.++|++.+....+++++|+|||+||++|+.|.|.++++++++++ +.|++||+|++++++++|+|.++||+++|++|+
T Consensus 1 ~~~~~~~~i~~~~~~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~v~f~kVDvD~~~~la~~~~V~~iPTf~~fk~G~- 79 (114)
T cd02954 1 SGWAVDQAILSEEEKVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNFAVIYLVDIDEVPDFNKMYELYDPPTVMFFFRNK- 79 (114)
T ss_pred CHHHHHHHHhccCCCEEEEEEECCCChhHHHHHHHHHHHHHHccCceEEEEEECCCCHHHHHHcCCCCCCEEEEEECCE-
Confidence 357889998865689999999999999999999999999999998 789999999999999999999999999999986
Q ss_pred eEEEEecC---------ccCHHHHHHHHHHh
Q 026887 178 QLESFSCS---------LAKFQKIKEAIALH 199 (231)
Q Consensus 178 ~~~~~~g~---------~~~~~~l~~~l~~~ 199 (231)
.+.+..|. ..+.+.+++.++..
T Consensus 80 ~v~~~~G~~~~~~~~~~~~~~~~~~~~~~~~ 110 (114)
T cd02954 80 HMKIDLGTGNNNKINWVFEDKQEFIDIIETI 110 (114)
T ss_pred EEEEEcCCCCCceEEEecCcHHHHHHHHHHH
Confidence 77766552 23456666666654
No 5
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=99.88 E-value=9.8e-22 Score=152.32 Aligned_cols=111 Identities=18% Similarity=0.212 Sum_probs=96.6
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEE-E
Q 026887 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFH-F 171 (231)
Q Consensus 94 ~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~-~ 171 (231)
+.++.+.++|++.+.+..+++|+|+|||+||++|+.+.|.++++++++++ +.|++||+|++++++++|+|++.||++ |
T Consensus 5 l~~l~s~~e~d~~I~~~~~~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~~~~~kVDVDe~~dla~~y~I~~~~t~~~f 84 (142)
T PLN00410 5 LPHLHSGWAVDQAILAEEERLVVIRFGHDWDETCMQMDEVLASVAETIKNFAVIYLVDITEVPDFNTMYELYDPCTVMFF 84 (142)
T ss_pred HhhhCCHHHHHHHHHhcCCCEEEEEEECCCChhHHHHHHHHHHHHHHcCCceEEEEEECCCCHHHHHHcCccCCCcEEEE
Confidence 45678999999999876789999999999999999999999999999998 788999999999999999999776666 9
Q ss_pred EECCCceEEEEecC-------ccCHHHHHHHHHHhhcCCC
Q 026887 172 YRGAHGQLESFSCS-------LAKFQKIKEAIALHNTDRC 204 (231)
Q Consensus 172 ~~~g~~~~~~~~g~-------~~~~~~l~~~l~~~~~~~~ 204 (231)
|++|+..+.+..|. ..+.++|++.++.+.....
T Consensus 85 fk~g~~~vd~~tG~~~k~~~~~~~k~~l~~~i~~~~~~a~ 124 (142)
T PLN00410 85 FRNKHIMIDLGTGNNNKINWALKDKQEFIDIVETVYRGAR 124 (142)
T ss_pred EECCeEEEEEecccccccccccCCHHHHHHHHHHHHHHHh
Confidence 99987677777773 3677899999998765443
No 6
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=99.87 E-value=3.6e-21 Score=140.57 Aligned_cols=100 Identities=30% Similarity=0.639 Sum_probs=91.6
Q ss_pred eCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC-CeEEEEEECCCCHHHHHHCCCCCCCEEEEEECC
Q 026887 97 IHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGA 175 (231)
Q Consensus 97 i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g 175 (231)
..+.++|++.+.+ .+++++|+||++||++|+.+.|.+++++++++ ++.|+.||++++.+++++|+|.++||+++|++|
T Consensus 3 ~lt~~~f~~~i~~-~~~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~~v~~~~vd~~~~~~l~~~~~v~~~Pt~~~~~~g 81 (103)
T PF00085_consen 3 VLTDENFEKFINE-SDKPVVVYFYAPWCPPCKAFKPILEKLAKEYKDNVKFAKVDCDENKELCKKYGVKSVPTIIFFKNG 81 (103)
T ss_dssp EESTTTHHHHHTT-TSSEEEEEEESTTSHHHHHHHHHHHHHHHHTTTTSEEEEEETTTSHHHHHHTTCSSSSEEEEEETT
T ss_pred ECCHHHHHHHHHc-cCCCEEEEEeCCCCCccccccceecccccccccccccchhhhhccchhhhccCCCCCCEEEEEECC
Confidence 4567899999977 57999999999999999999999999999998 799999999999999999999999999999998
Q ss_pred CceEEEEecCccCHHHHHHHHHHh
Q 026887 176 HGQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 176 ~~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
+ ...++.|. .+.+.|.++|++|
T Consensus 82 ~-~~~~~~g~-~~~~~l~~~i~~~ 103 (103)
T PF00085_consen 82 K-EVKRYNGP-RNAESLIEFIEKH 103 (103)
T ss_dssp E-EEEEEESS-SSHHHHHHHHHHH
T ss_pred c-EEEEEECC-CCHHHHHHHHHcC
Confidence 6 77788875 6789999999987
No 7
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=99.86 E-value=6e-21 Score=140.70 Aligned_cols=98 Identities=23% Similarity=0.458 Sum_probs=87.1
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC--eEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q 026887 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE--IVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (231)
Q Consensus 95 ~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~ 172 (231)
+.|.+.++|++.+.+ +++++|+|||+||++|+.+.|.++++++++++ +.|+.+|+| +++++++|+|+++||+++|
T Consensus 2 ~~i~~~~~~~~~i~~--~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d-~~~~~~~~~v~~~Pt~~~~ 78 (102)
T cd02948 2 VEINNQEEWEELLSN--KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEAD-TIDTLKRYRGKCEPTFLFY 78 (102)
T ss_pred eEccCHHHHHHHHcc--CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCC-CHHHHHHcCCCcCcEEEEE
Confidence 457899999998864 89999999999999999999999999999863 789999999 7889999999999999999
Q ss_pred ECCCceEEEEecCccCHHHHHHHHHH
Q 026887 173 RGAHGQLESFSCSLAKFQKIKEAIAL 198 (231)
Q Consensus 173 ~~g~~~~~~~~g~~~~~~~l~~~l~~ 198 (231)
++|+ .+.+..| .+.+.|.++|++
T Consensus 79 ~~g~-~~~~~~G--~~~~~~~~~i~~ 101 (102)
T cd02948 79 KNGE-LVAVIRG--ANAPLLNKTITE 101 (102)
T ss_pred ECCE-EEEEEec--CChHHHHHHHhh
Confidence 9875 7788877 467888888875
No 8
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=99.86 E-value=4.7e-21 Score=142.50 Aligned_cols=100 Identities=16% Similarity=0.243 Sum_probs=85.7
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEEEECCC--
Q 026887 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAH-- 176 (231)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~-- 176 (231)
.+++++.+.+.++++|+|+|+|+||++|+.+.|.++++++++++ +.|++||+|+.++++++|+|...||++||++|+
T Consensus 2 ~~~~d~~i~~~~~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~~~f~kVDVDev~dva~~y~I~amPtfvffkngkh~ 81 (114)
T cd02986 2 KKEVDQAIKSTAEKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKMASIYLVDVDKVPVYTQYFDISYIPSTIFFFNGQHM 81 (114)
T ss_pred HHHHHHHHHhcCCCEEEEEEeCCCChhHHHHHHHHHHHHHHccCceEEEEEeccccHHHHHhcCceeCcEEEEEECCcEE
Confidence 46889999877799999999999999999999999999999999 999999999999999999999999999999876
Q ss_pred ------ceEEEEecCccCHHHHHHHHHHh
Q 026887 177 ------GQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 177 ------~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
|....+.+...+.+++++.++..
T Consensus 82 ~~d~gt~~~~k~~~~~~~k~~~idi~e~~ 110 (114)
T cd02986 82 KVDYGSPDHTKFVGSFKTKQDFIDLIEVI 110 (114)
T ss_pred EEecCCCCCcEEEEEcCchhHHHHHHHHH
Confidence 12223333445567888887754
No 9
>PHA02278 thioredoxin-like protein
Probab=99.86 E-value=6e-21 Score=141.03 Aligned_cols=93 Identities=18% Similarity=0.269 Sum_probs=79.6
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC-CeEEEEEECCCC----HHHHHHCCCCCCCEEEEE
Q 026887 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFDEN----KPMCKSLNVKVLPYFHFY 172 (231)
Q Consensus 98 ~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~Vd~d~~----~~l~~~~~i~~~Pt~~~~ 172 (231)
.+.++|++.+.+ +++++|+|||+||++|+.+.|.++++++++. ++.|++||+|++ ++++++|+|.++||+++|
T Consensus 2 ~~~~~~~~~i~~--~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~~~~~~~~vdvd~~~~d~~~l~~~~~I~~iPT~i~f 79 (103)
T PHA02278 2 NSLVDLNTAIRQ--KKDVIVMITQDNCGKCEILKSVIPMFQESGDIKKPILTLNLDAEDVDREKAVKLFDIMSTPVLIGY 79 (103)
T ss_pred CCHHHHHHHHhC--CCcEEEEEECCCCHHHHhHHHHHHHHHhhhcCCceEEEEECCccccccHHHHHHCCCccccEEEEE
Confidence 457899999854 8999999999999999999999999998754 478999999986 689999999999999999
Q ss_pred ECCCceEEEEecCccCHHHHHH
Q 026887 173 RGAHGQLESFSCSLAKFQKIKE 194 (231)
Q Consensus 173 ~~g~~~~~~~~g~~~~~~~l~~ 194 (231)
++|+ .+.++.|. .+.++|.+
T Consensus 80 k~G~-~v~~~~G~-~~~~~l~~ 99 (103)
T PHA02278 80 KDGQ-LVKKYEDQ-VTPMQLQE 99 (103)
T ss_pred ECCE-EEEEEeCC-CCHHHHHh
Confidence 9986 88888774 44566554
No 10
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=99.86 E-value=6.5e-21 Score=140.45 Aligned_cols=101 Identities=24% Similarity=0.537 Sum_probs=86.4
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q 026887 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (231)
Q Consensus 94 ~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~ 172 (231)
++++ +.++|++.+.+. +++++|+||++||++|+.+.|.++++++++.+ +.|++||++++++++++|+|.++||+++|
T Consensus 3 v~~l-~~~~f~~~i~~~-~~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~i~~~Pt~~~~ 80 (104)
T cd03004 3 VITL-TPEDFPELVLNR-KEPWLVDFYAPWCGPCQALLPELRKAARALKGKVKVGSVDCQKYESLCQQANIRAYPTIRLY 80 (104)
T ss_pred ceEc-CHHHHHHHHhcC-CCeEEEEEECCCCHHHHHHHHHHHHHHHHhcCCcEEEEEECCchHHHHHHcCCCcccEEEEE
Confidence 3444 578999988763 67999999999999999999999999999865 89999999999999999999999999999
Q ss_pred ECCCceEEEEecCccCHHHHHHHH
Q 026887 173 RGAHGQLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 173 ~~g~~~~~~~~g~~~~~~~l~~~l 196 (231)
++|++.+..+.|...+.++|.++|
T Consensus 81 ~~g~~~~~~~~G~~~~~~~l~~~i 104 (104)
T cd03004 81 PGNASKYHSYNGWHRDADSILEFI 104 (104)
T ss_pred cCCCCCceEccCCCCCHHHHHhhC
Confidence 998557888887543367777654
No 11
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.85 E-value=6.7e-21 Score=157.09 Aligned_cols=110 Identities=29% Similarity=0.586 Sum_probs=102.9
Q ss_pred CeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q 026887 93 NMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (231)
Q Consensus 93 ~~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~ 172 (231)
.++.|.+..+|+..+.....+.|+|+|+|.||+||+++.|.+..++.+|++.+|++||+|+++..+..+||..+||++||
T Consensus 2 ~Vi~v~~d~df~~~ls~ag~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp~aVFlkVdVd~c~~taa~~gV~amPTFiff 81 (288)
T KOG0908|consen 2 PVIVVNSDSDFQRELSAAGGKLVVVDFTASWCGPCKRIAPIFSDLANKYPGAVFLKVDVDECRGTAATNGVNAMPTFIFF 81 (288)
T ss_pred CeEEecCcHHHHHhhhccCceEEEEEEEecccchHHhhhhHHHHhhhhCcccEEEEEeHHHhhchhhhcCcccCceEEEE
Confidence 46789999999999999888999999999999999999999999999999999999999999999999999999999999
Q ss_pred ECCCceEEEEecCccCHHHHHHHHHHhhcCCCC
Q 026887 173 RGAHGQLESFSCSLAKFQKIKEAIALHNTDRCS 205 (231)
Q Consensus 173 ~~g~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~ 205 (231)
.+|. +++.+.| .+...|++.+++|......
T Consensus 82 ~ng~-kid~~qG--Ad~~gLe~kv~~~~stsaa 111 (288)
T KOG0908|consen 82 RNGV-KIDQIQG--ADASGLEEKVAKYASTSAA 111 (288)
T ss_pred ecCe-EeeeecC--CCHHHHHHHHHHHhccCcc
Confidence 9987 9999998 8889999999999765533
No 12
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=99.85 E-value=9.5e-21 Score=139.27 Aligned_cols=93 Identities=13% Similarity=0.288 Sum_probs=82.0
Q ss_pred HHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECC-CCHHHHHHCCCCCCCEEEEEECCCceE
Q 026887 101 QEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD-ENKPMCKSLNVKVLPYFHFYRGAHGQL 179 (231)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d-~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 179 (231)
.++.+.+.+.++++++|+|||+||++|+.+.|.+++++++++++.+++||.+ +++.++++|+|.++||+++|++| .+
T Consensus 7 ~~~~~~~~~~~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~~~~~~~vd~~~~~~~l~~~~~V~~~PT~~lf~~g--~~ 84 (100)
T cd02999 7 NIALDLMAFNREDYTAVLFYASWCPFSASFRPHFNALSSMFPQIRHLAIEESSIKPSLLSRYGVVGFPTILLFNST--PR 84 (100)
T ss_pred hHHHHHHHhcCCCEEEEEEECCCCHHHHhHhHHHHHHHHHhccCceEEEECCCCCHHHHHhcCCeecCEEEEEcCC--ce
Confidence 4566777777899999999999999999999999999999999999999999 88999999999999999999876 66
Q ss_pred EEEecCccCHHHHHHHH
Q 026887 180 ESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 180 ~~~~g~~~~~~~l~~~l 196 (231)
.++.|. .+.+.|.++|
T Consensus 85 ~~~~G~-~~~~~l~~f~ 100 (100)
T cd02999 85 VRYNGT-RTLDSLAAFY 100 (100)
T ss_pred eEecCC-CCHHHHHhhC
Confidence 777775 6667777764
No 13
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=99.85 E-value=3.5e-20 Score=139.23 Aligned_cols=91 Identities=23% Similarity=0.408 Sum_probs=84.5
Q ss_pred CCCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEE
Q 026887 91 APNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFH 170 (231)
Q Consensus 91 ~~~~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~ 170 (231)
...+..|.+.++|.+.+.+ +++++|+||++||++|+.+.|.+++++++++++.|++||++++++++++|+|.++||++
T Consensus 3 ~g~v~~i~~~~~~~~~i~~--~~~vvV~f~a~~c~~C~~~~p~l~~la~~~~~i~f~~Vd~~~~~~l~~~~~v~~vPt~l 80 (113)
T cd02989 3 HGKYREVSDEKEFFEIVKS--SERVVCHFYHPEFFRCKIMDKHLEILAKKHLETKFIKVNAEKAPFLVEKLNIKVLPTVI 80 (113)
T ss_pred CCCeEEeCCHHHHHHHHhC--CCcEEEEEECCCCccHHHHHHHHHHHHHHcCCCEEEEEEcccCHHHHHHCCCccCCEEE
Confidence 3567889999999999976 68999999999999999999999999999999999999999999999999999999999
Q ss_pred EEECCCceEEEEec
Q 026887 171 FYRGAHGQLESFSC 184 (231)
Q Consensus 171 ~~~~g~~~~~~~~g 184 (231)
+|++|+ .+.++.|
T Consensus 81 ~fk~G~-~v~~~~g 93 (113)
T cd02989 81 LFKNGK-TVDRIVG 93 (113)
T ss_pred EEECCE-EEEEEEC
Confidence 999986 7777766
No 14
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=99.85 E-value=2.2e-20 Score=135.55 Aligned_cols=94 Identities=22% Similarity=0.446 Sum_probs=82.0
Q ss_pred HHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEE
Q 026887 102 EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLE 180 (231)
Q Consensus 102 ~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 180 (231)
+|++.+.+.++++++|+||++||++|+.+.|.++++++.+++ +.+++||++++++++++|+|.++||+++|++|+ .+.
T Consensus 2 ~f~~~i~~~~~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~l~~~~~i~~~Pt~~~~~~g~-~~~ 80 (96)
T cd02956 2 NFQQVLQESTQVPVVVDFWAPRSPPSKELLPLLERLAEEYQGQFVLAKVNCDAQPQIAQQFGVQALPTVYLFAAGQ-PVD 80 (96)
T ss_pred ChHHHHHhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhCCcEEEEEEeccCCHHHHHHcCCCCCCEEEEEeCCE-Eee
Confidence 577778765688999999999999999999999999999875 889999999999999999999999999999765 666
Q ss_pred EEecCccCHHHHHHHHH
Q 026887 181 SFSCSLAKFQKIKEAIA 197 (231)
Q Consensus 181 ~~~g~~~~~~~l~~~l~ 197 (231)
.+.|. .+.++|.++|+
T Consensus 81 ~~~g~-~~~~~l~~~l~ 96 (96)
T cd02956 81 GFQGA-QPEEQLRQMLD 96 (96)
T ss_pred eecCC-CCHHHHHHHhC
Confidence 67663 56688888764
No 15
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=99.84 E-value=2.5e-20 Score=136.79 Aligned_cols=98 Identities=19% Similarity=0.392 Sum_probs=83.7
Q ss_pred CeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEE
Q 026887 93 NMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (231)
Q Consensus 93 ~~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~ 171 (231)
+++.+ +.++|++.+.+ +++++|+||++||++|+.+.|.++++++++++ +.|++||+++++.++++++|+++||+++
T Consensus 2 ~~~~l-~~~~f~~~v~~--~~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~ 78 (101)
T cd03003 2 EIVTL-DRGDFDAAVNS--GEIWFVNFYSPRCSHCHDLAPTWREFAKEMDGVIRIGAVNCGDDRMLCRSQGVNSYPSLYV 78 (101)
T ss_pred CeEEc-CHhhHHHHhcC--CCeEEEEEECCCChHHHHhHHHHHHHHHHhcCceEEEEEeCCccHHHHHHcCCCccCEEEE
Confidence 34445 57799998855 69999999999999999999999999999986 8999999999999999999999999999
Q ss_pred EECCCceEEEEecCccCHHHHHHH
Q 026887 172 YRGAHGQLESFSCSLAKFQKIKEA 195 (231)
Q Consensus 172 ~~~g~~~~~~~~g~~~~~~~l~~~ 195 (231)
|++|+ .+..+.|. .+.+.|.++
T Consensus 79 ~~~g~-~~~~~~G~-~~~~~l~~f 100 (101)
T cd03003 79 FPSGM-NPEKYYGD-RSKESLVKF 100 (101)
T ss_pred EcCCC-CcccCCCC-CCHHHHHhh
Confidence 99876 67777764 455666654
No 16
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=99.84 E-value=2.6e-20 Score=139.84 Aligned_cols=101 Identities=15% Similarity=0.281 Sum_probs=82.6
Q ss_pred CCeEEeCChHHHHHHHH-hcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHH-HHCCCCCCCE
Q 026887 92 PNMIDIHSTQEFLEALS-QAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMC-KSLNVKVLPY 168 (231)
Q Consensus 92 ~~~~~i~s~~~~~~~l~-~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~-~~~~i~~~Pt 168 (231)
++++++ +.++|++.+. ..++++++|+|||+||++|+.+.|.++++++++++ +.|++||++++.+++ ++|+|.++||
T Consensus 9 ~~v~~l-~~~~f~~~~~v~~~~~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~v~~~~Vd~d~~~~l~~~~~~I~~~PT 87 (113)
T cd03006 9 SPVLDF-YKGQLDYAEELRTDAEVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQVLFVAINCWWPQGKCRKQKHFFYFPV 87 (113)
T ss_pred CCeEEe-chhhhHHHHhcccCCCEEEEEEECCCCHHHHHHHHHHHHHHHHhcCCeEEEEEECCCChHHHHHhcCCcccCE
Confidence 445544 4667777632 22489999999999999999999999999999986 899999999999999 5899999999
Q ss_pred EEEEECCCceEEEEecCccCHHHHHHH
Q 026887 169 FHFYRGAHGQLESFSCSLAKFQKIKEA 195 (231)
Q Consensus 169 ~~~~~~g~~~~~~~~g~~~~~~~l~~~ 195 (231)
+++|++|+ ....+.|. .+.+.|..+
T Consensus 88 l~lf~~g~-~~~~y~G~-~~~~~i~~~ 112 (113)
T cd03006 88 IHLYYRSR-GPIEYKGP-MRAPYMEKF 112 (113)
T ss_pred EEEEECCc-cceEEeCC-CCHHHHHhh
Confidence 99999987 66777774 555777654
No 17
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=99.84 E-value=7.4e-20 Score=137.30 Aligned_cols=91 Identities=29% Similarity=0.486 Sum_probs=81.8
Q ss_pred CCCeEEeCChHHHHHHHHhcC-CCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEE
Q 026887 91 APNMIDIHSTQEFLEALSQAG-DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYF 169 (231)
Q Consensus 91 ~~~~~~i~s~~~~~~~l~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~ 169 (231)
...+.++++ ++|.+.+.+.+ +++++|+||++||++|+.+.|.+++++++++++.|++||++++ +++++|+|.++||+
T Consensus 3 ~g~v~~i~~-~~f~~~i~~~~~~~~vvv~F~a~~c~~C~~l~~~l~~la~~~~~v~f~~vd~~~~-~l~~~~~i~~~Pt~ 80 (113)
T cd02957 3 FGEVREISS-KEFLEEVTKASKGTRVVVHFYEPGFPRCKILDSHLEELAAKYPETKFVKINAEKA-FLVNYLDIKVLPTL 80 (113)
T ss_pred CceEEEEcH-HHHHHHHHccCCCCEEEEEEeCCCCCcHHHHHHHHHHHHHHCCCcEEEEEEchhh-HHHHhcCCCcCCEE
Confidence 345677877 89999987642 4899999999999999999999999999999999999999998 99999999999999
Q ss_pred EEEECCCceEEEEec
Q 026887 170 HFYRGAHGQLESFSC 184 (231)
Q Consensus 170 ~~~~~g~~~~~~~~g 184 (231)
++|++|+ .+.++.|
T Consensus 81 ~~f~~G~-~v~~~~G 94 (113)
T cd02957 81 LVYKNGE-LIDNIVG 94 (113)
T ss_pred EEEECCE-EEEEEec
Confidence 9999986 7888776
No 18
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.84 E-value=2.1e-20 Score=158.53 Aligned_cols=108 Identities=20% Similarity=0.446 Sum_probs=94.5
Q ss_pred CCeEEeCChHHHHHHHHh-cCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEE
Q 026887 92 PNMIDIHSTQEFLEALSQ-AGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYF 169 (231)
Q Consensus 92 ~~~~~i~s~~~~~~~l~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~ 169 (231)
+.+++|+ ..+|.+.+.+ ...+||+|+||+|||++|+.+.|.+++++.+|.+ +++++||||+++.++.+|||+++||+
T Consensus 23 ~~I~dvT-~anfe~~V~~~S~~~PVlV~fWap~~~~c~qL~p~Lekla~~~~G~f~LakvN~D~~p~vAaqfgiqsIPtV 101 (304)
T COG3118 23 PGIKDVT-EANFEQEVIQSSREVPVLVDFWAPWCGPCKQLTPTLEKLAAEYKGKFKLAKVNCDAEPMVAAQFGVQSIPTV 101 (304)
T ss_pred ccceech-HhHHHHHHHHHccCCCeEEEecCCCCchHHHHHHHHHHHHHHhCCceEEEEecCCcchhHHHHhCcCcCCeE
Confidence 4566665 5677776654 4467999999999999999999999999999987 99999999999999999999999999
Q ss_pred EEEECCCceEEEEecCccCHHHHHHHHHHhhcC
Q 026887 170 HFYRGAHGQLESFSCSLAKFQKIKEAIALHNTD 202 (231)
Q Consensus 170 ~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~~ 202 (231)
+.|++|+ .+..|.|..+ .+.|+++|+++...
T Consensus 102 ~af~dGq-pVdgF~G~qP-esqlr~~ld~~~~~ 132 (304)
T COG3118 102 YAFKDGQ-PVDGFQGAQP-ESQLRQFLDKVLPA 132 (304)
T ss_pred EEeeCCc-CccccCCCCc-HHHHHHHHHHhcCh
Confidence 9999998 9999998644 37999999999764
No 19
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=99.83 E-value=1.1e-19 Score=137.52 Aligned_cols=102 Identities=11% Similarity=0.067 Sum_probs=87.9
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChh--hH--hhhHHHHHHHHHC--C-CeEEEEEECCCCHHHHHHCCCCCCC
Q 026887 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCAS--CR--ALFPKLCRTAEEH--P-EIVFLKVNFDENKPMCKSLNVKVLP 167 (231)
Q Consensus 95 ~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~--C~--~~~p~l~~l~~~~--~-~v~~~~Vd~d~~~~l~~~~~i~~~P 167 (231)
+...+.++|++.+.++ +.++|++||+.||++ |+ .+.|.++++++++ + ++.|++||+|++++++++|+|+++|
T Consensus 11 v~~lt~~nF~~~v~~~-~~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~~~La~~~~I~~iP 89 (120)
T cd03065 11 VIDLNEKNYKQVLKKY-DVLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKDAKVAKKLGLDEED 89 (120)
T ss_pred eeeCChhhHHHHHHhC-CceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCCHHHHHHcCCcccc
Confidence 3334579999999874 689999999999987 99 8899999999987 5 5999999999999999999999999
Q ss_pred EEEEEECCCceEEEEecCccCHHHHHHHHHHhh
Q 026887 168 YFHFYRGAHGQLESFSCSLAKFQKIKEAIALHN 200 (231)
Q Consensus 168 t~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~ 200 (231)
|+++|++|+ .+. +.|. .+.+.|.++|++..
T Consensus 90 Tl~lfk~G~-~v~-~~G~-~~~~~l~~~l~~~~ 119 (120)
T cd03065 90 SIYVFKDDE-VIE-YDGE-FAADTLVEFLLDLI 119 (120)
T ss_pred EEEEEECCE-EEE-eeCC-CCHHHHHHHHHHHh
Confidence 999999976 665 7774 56799999998753
No 20
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=99.83 E-value=1.5e-19 Score=131.16 Aligned_cols=95 Identities=22% Similarity=0.545 Sum_probs=83.8
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHH-CCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCc
Q 026887 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEE-HPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHG 177 (231)
Q Consensus 99 s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~-~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~ 177 (231)
|.++|++.+....+++++|+||++||++|+.+.+.+++++++ ++++.++++|++++++++++|+|.++||+++|++|+
T Consensus 1 s~~~~~~~~~~~~~~~v~v~f~~~~C~~C~~~~~~l~~l~~~~~~~i~~~~vd~~~~~~~~~~~~i~~~Pt~~~~~~g~- 79 (97)
T cd02984 1 SEEEFEELLKSDASKLLVLHFWAPWAEPCKQMNQVFEELAKEAFPSVLFLSIEAEELPEISEKFEITAVPTFVFFRNGT- 79 (97)
T ss_pred CHHHHHHHHhhCCCCEEEEEEECCCCHHHHHHhHHHHHHHHHhCCceEEEEEccccCHHHHHhcCCccccEEEEEECCE-
Confidence 467899999886579999999999999999999999999999 567999999999999999999999999999999875
Q ss_pred eEEEEecCccCHHHHHHHH
Q 026887 178 QLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 178 ~~~~~~g~~~~~~~l~~~l 196 (231)
.+.++.| .+.++|.+.|
T Consensus 80 ~~~~~~g--~~~~~l~~~~ 96 (97)
T cd02984 80 IVDRVSG--ADPKELAKKV 96 (97)
T ss_pred EEEEEeC--CCHHHHHHhh
Confidence 7777777 4567777765
No 21
>PTZ00051 thioredoxin; Provisional
Probab=99.82 E-value=2.2e-19 Score=130.62 Aligned_cols=96 Identities=29% Similarity=0.591 Sum_probs=86.2
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEE
Q 026887 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (231)
Q Consensus 94 ~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~ 173 (231)
+.++.+.+++.+.+.+ +++++|+||++||++|+.+.|.+++++++++++.|+.+|++++..++++|+|.++||+++|+
T Consensus 2 v~~i~~~~~~~~~~~~--~~~vli~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~ 79 (98)
T PTZ00051 2 VHIVTSQAEFESTLSQ--NELVIVDFYAEWCGPCKRIAPFYEECSKEYTKMVFVKVDVDELSEVAEKENITSMPTFKVFK 79 (98)
T ss_pred eEEecCHHHHHHHHhc--CCeEEEEEECCCCHHHHHHhHHHHHHHHHcCCcEEEEEECcchHHHHHHCCCceeeEEEEEe
Confidence 5678899999998865 78999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCceEEEEecCccCHHHHHH
Q 026887 174 GAHGQLESFSCSLAKFQKIKE 194 (231)
Q Consensus 174 ~g~~~~~~~~g~~~~~~~l~~ 194 (231)
+|+ .+.++.| ...++|++
T Consensus 80 ~g~-~~~~~~G--~~~~~~~~ 97 (98)
T PTZ00051 80 NGS-VVDTLLG--ANDEALKQ 97 (98)
T ss_pred CCe-EEEEEeC--CCHHHhhc
Confidence 876 7888887 45566653
No 22
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=99.82 E-value=2.1e-19 Score=133.49 Aligned_cols=99 Identities=19% Similarity=0.459 Sum_probs=82.0
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHC----C---CeEEEEEECCCCHHHHHHCCCCCC
Q 026887 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH----P---EIVFLKVNFDENKPMCKSLNVKVL 166 (231)
Q Consensus 94 ~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~----~---~v~~~~Vd~d~~~~l~~~~~i~~~ 166 (231)
++++ +.++|++.+.. +++++|+|||+||++|+.+.|.++++++++ + ++.+++||++++.+++++|+|+++
T Consensus 3 v~~l-~~~~f~~~i~~--~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~~~l~~~~~v~~~ 79 (108)
T cd02996 3 IVSL-TSGNIDDILQS--AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKESDIADRYRINKY 79 (108)
T ss_pred eEEc-CHhhHHHHHhc--CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCCHHHHHhCCCCcC
Confidence 3444 57899998855 789999999999999999999999988764 2 389999999999999999999999
Q ss_pred CEEEEEECCCceEEEEecCccCHHHHHHHH
Q 026887 167 PYFHFYRGAHGQLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 167 Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l 196 (231)
||+++|++|+.....+.| ..+.+.|.++|
T Consensus 80 Ptl~~~~~g~~~~~~~~g-~~~~~~l~~fi 108 (108)
T cd02996 80 PTLKLFRNGMMMKREYRG-QRSVEALAEFV 108 (108)
T ss_pred CEEEEEeCCcCcceecCC-CCCHHHHHhhC
Confidence 999999987633455665 46667777764
No 23
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=99.82 E-value=1.5e-19 Score=135.26 Aligned_cols=98 Identities=11% Similarity=0.193 Sum_probs=83.2
Q ss_pred ChHHHHHHH-HhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCCCHHHHHHCCCCCCCEEEEEECC
Q 026887 99 STQEFLEAL-SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGA 175 (231)
Q Consensus 99 s~~~~~~~l-~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g 175 (231)
+.++|++.+ ....+++++|+||++||++|+.+.|.+++++++++ ++.+++||+++++.++++++|.++||+++|++|
T Consensus 10 ~~~~~~~~~~~~~~~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~~l~~~~~V~~~Pt~~i~~~g 89 (111)
T cd02963 10 TFSQYENEIVPKSFKKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHERRLARKLGAHSVPAIVGIING 89 (111)
T ss_pred eHHHHHHhhccccCCCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccHHHHHHcCCccCCEEEEEECC
Confidence 567777544 33458999999999999999999999999999986 489999999999999999999999999999987
Q ss_pred CceEEEEecCccCHHHHHHHHHH
Q 026887 176 HGQLESFSCSLAKFQKIKEAIAL 198 (231)
Q Consensus 176 ~~~~~~~~g~~~~~~~l~~~l~~ 198 (231)
+ .+..+.| ..+.+.|.++|++
T Consensus 90 ~-~~~~~~G-~~~~~~l~~~i~~ 110 (111)
T cd02963 90 Q-VTFYHDS-SFTKQHVVDFVRK 110 (111)
T ss_pred E-EEEEecC-CCCHHHHHHHHhc
Confidence 5 5565555 4566889999876
No 24
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=99.82 E-value=4.5e-19 Score=139.64 Aligned_cols=90 Identities=17% Similarity=0.362 Sum_probs=79.8
Q ss_pred CeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCCCHHHHHHCCCCC-----
Q 026887 93 NMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDENKPMCKSLNVKV----- 165 (231)
Q Consensus 93 ~~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~~~l~~~~~i~~----- 165 (231)
.+.+ .+.++|++.+...++++++|+||++||++|+.+.|.+++++++++ ++.|++||++++++++++|+|.+
T Consensus 29 ~v~~-l~~~~f~~~l~~~~~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~la~~~~V~~~~~v~ 107 (152)
T cd02962 29 HIKY-FTPKTLEEELERDKRVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPNVAEKFRVSTSPLSK 107 (152)
T ss_pred ccEE-cCHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHHHHHHcCceecCCcC
Confidence 3444 446889998876667899999999999999999999999999986 49999999999999999999988
Q ss_pred -CCEEEEEECCCceEEEEec
Q 026887 166 -LPYFHFYRGAHGQLESFSC 184 (231)
Q Consensus 166 -~Pt~~~~~~g~~~~~~~~g 184 (231)
+||+++|++|+ ++.++.|
T Consensus 108 ~~PT~ilf~~Gk-~v~r~~G 126 (152)
T cd02962 108 QLPTIILFQGGK-EVARRPY 126 (152)
T ss_pred CCCEEEEEECCE-EEEEEec
Confidence 99999999986 8888887
No 25
>PRK09381 trxA thioredoxin; Provisional
Probab=99.81 E-value=1.2e-18 Score=129.54 Aligned_cols=103 Identities=18% Similarity=0.425 Sum_probs=88.3
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q 026887 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (231)
Q Consensus 94 ~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~ 172 (231)
++++. .++|++.+.+ .+++++|+||++||++|+.+.|.++++++++++ +.++.+|++.++.++++|+|.++||+++|
T Consensus 5 v~~~~-~~~~~~~v~~-~~~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~ 82 (109)
T PRK09381 5 IIHLT-DDSFDTDVLK-ADGAILVDFWAEWCGPCKMIAPILDEIADEYQGKLTVAKLNIDQNPGTAPKYGIRGIPTLLLF 82 (109)
T ss_pred ceeeC-hhhHHHHHhc-CCCeEEEEEECCCCHHHHHHhHHHHHHHHHhCCCcEEEEEECCCChhHHHhCCCCcCCEEEEE
Confidence 45564 5788876654 378999999999999999999999999999965 89999999999999999999999999999
Q ss_pred ECCCceEEEEecCccCHHHHHHHHHHhh
Q 026887 173 RGAHGQLESFSCSLAKFQKIKEAIALHN 200 (231)
Q Consensus 173 ~~g~~~~~~~~g~~~~~~~l~~~l~~~~ 200 (231)
++|+ .+.++.|. .+.++|+++|++++
T Consensus 83 ~~G~-~~~~~~G~-~~~~~l~~~i~~~~ 108 (109)
T PRK09381 83 KNGE-VAATKVGA-LSKGQLKEFLDANL 108 (109)
T ss_pred eCCe-EEEEecCC-CCHHHHHHHHHHhc
Confidence 8865 66677664 56789999998875
No 26
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.80 E-value=1.4e-18 Score=140.18 Aligned_cols=106 Identities=22% Similarity=0.386 Sum_probs=89.6
Q ss_pred CCCeEEeCChHHHHHHHHhcC-CCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEE
Q 026887 91 APNMIDIHSTQEFLEALSQAG-DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYF 169 (231)
Q Consensus 91 ~~~~~~i~s~~~~~~~l~~~~-~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~ 169 (231)
...+.+|.+.++|.+.+.+.+ +.+|||+||++||++|+.+.|.+++++++|++++|++||++++ .++.+|+|.++||+
T Consensus 61 ~g~v~ei~~~~~f~~~v~~~~~~~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~~vkF~kVd~d~~-~l~~~f~v~~vPTl 139 (175)
T cd02987 61 FGKVYELDSGEQFLDAIDKEGKDTTVVVHIYEPGIPGCAALNSSLLCLAAEYPAVKFCKIRASAT-GASDEFDTDALPAL 139 (175)
T ss_pred CCeEEEcCCHHHHHHHHHhcCCCcEEEEEEECCCCchHHHHHHHHHHHHHHCCCeEEEEEeccch-hhHHhCCCCCCCEE
Confidence 567888988899999987642 4699999999999999999999999999999999999999987 89999999999999
Q ss_pred EEEECCCceEEEEec------CccCHHHHHHHHHH
Q 026887 170 HFYRGAHGQLESFSC------SLAKFQKIKEAIAL 198 (231)
Q Consensus 170 ~~~~~g~~~~~~~~g------~~~~~~~l~~~l~~ 198 (231)
++|++|+ .+.++.| .....+.|+.+|.+
T Consensus 140 llyk~G~-~v~~~vG~~~~~g~~f~~~~le~~L~~ 173 (175)
T cd02987 140 LVYKGGE-LIGNFVRVTEDLGEDFDAEDLESFLVE 173 (175)
T ss_pred EEEECCE-EEEEEechHHhcCCCCCHHHHHHHHHh
Confidence 9999986 7777765 12344556666554
No 27
>PRK10996 thioredoxin 2; Provisional
Probab=99.80 E-value=1.1e-18 Score=135.79 Aligned_cols=98 Identities=16% Similarity=0.448 Sum_probs=86.9
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC-CeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCC
Q 026887 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAH 176 (231)
Q Consensus 98 ~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~ 176 (231)
.+.++|++.+++ +++++|+||++||++|+.+.|.+.++++++. ++.++++|++++++++++|+|.++||+++|++|+
T Consensus 40 ~~~~~~~~~i~~--~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~~v~~~~vd~~~~~~l~~~~~V~~~Ptlii~~~G~ 117 (139)
T PRK10996 40 ATGETLDKLLQD--DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSGKVRFVKVNTEAERELSARFRIRSIPTIMIFKNGQ 117 (139)
T ss_pred cCHHHHHHHHhC--CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCCCeEEEEEeCCCCHHHHHhcCCCccCEEEEEECCE
Confidence 467899988865 8999999999999999999999999999876 4999999999999999999999999999999865
Q ss_pred ceEEEEecCccCHHHHHHHHHHh
Q 026887 177 GQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 177 ~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
.+..+.|. .+.++|+++|+++
T Consensus 118 -~v~~~~G~-~~~e~l~~~l~~~ 138 (139)
T PRK10996 118 -VVDMLNGA-VPKAPFDSWLNEA 138 (139)
T ss_pred -EEEEEcCC-CCHHHHHHHHHHh
Confidence 77777764 6678999999875
No 28
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=99.79 E-value=2.2e-18 Score=126.22 Aligned_cols=97 Identities=18% Similarity=0.366 Sum_probs=81.3
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCCCHHHHHHCCCCCCCEEEE
Q 026887 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (231)
Q Consensus 94 ~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~ 171 (231)
++++ +.++|++.++ ++ ++|+|||+||++|+.+.|.++++++.++ ++.++++|+++++.++++|+|.++||+++
T Consensus 3 v~~l-~~~~f~~~~~---~~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt~~~ 77 (101)
T cd02994 3 VVEL-TDSNWTLVLE---GE-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPTIYH 77 (101)
T ss_pred eEEc-ChhhHHHHhC---CC-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCEEEE
Confidence 4455 4779998763 33 7899999999999999999999998875 48999999999999999999999999999
Q ss_pred EECCCceEEEEecCccCHHHHHHHHHH
Q 026887 172 YRGAHGQLESFSCSLAKFQKIKEAIAL 198 (231)
Q Consensus 172 ~~~g~~~~~~~~g~~~~~~~l~~~l~~ 198 (231)
|++|+ +..+.| ..+.++|.++|++
T Consensus 78 ~~~g~--~~~~~G-~~~~~~l~~~i~~ 101 (101)
T cd02994 78 AKDGV--FRRYQG-PRDKEDLISFIEE 101 (101)
T ss_pred eCCCC--EEEecC-CCCHHHHHHHHhC
Confidence 98864 466666 4667888888863
No 29
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=99.79 E-value=1.9e-18 Score=128.06 Aligned_cols=97 Identities=25% Similarity=0.554 Sum_probs=82.6
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCC--CHHHHHHCCCCCCCEEEEEEC
Q 026887 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDE--NKPMCKSLNVKVLPYFHFYRG 174 (231)
Q Consensus 98 ~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~--~~~l~~~~~i~~~Pt~~~~~~ 174 (231)
.+.++|++.+.+ .+++++|+||++||++|+.+.|.++++++++.+ +.++.+|+++ +.+++++|+|.++||+++|++
T Consensus 5 l~~~~~~~~i~~-~~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~~~~~~~v~~~~~~~~~~~~~~~i~~~Pt~~~~~~ 83 (109)
T cd03002 5 LTPKNFDKVVHN-TNYTTLVEFYAPWCGHCKNLKPEYAKAAKELDGLVQVAAVDCDEDKNKPLCGKYGVQGFPTLKVFRP 83 (109)
T ss_pred cchhhHHHHHhc-CCCeEEEEEECCCCHHHHhhChHHHHHHHHhcCCceEEEEecCccccHHHHHHcCCCcCCEEEEEeC
Confidence 346789998876 378899999999999999999999999999875 8899999998 889999999999999999998
Q ss_pred CC----ceEEEEecCccCHHHHHHHH
Q 026887 175 AH----GQLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 175 g~----~~~~~~~g~~~~~~~l~~~l 196 (231)
|+ .....+.| ..+.+.|.++|
T Consensus 84 ~~~~~~~~~~~~~G-~~~~~~l~~fi 108 (109)
T cd03002 84 PKKASKHAVEDYNG-ERSAKAIVDFV 108 (109)
T ss_pred CCcccccccccccC-ccCHHHHHHHh
Confidence 86 23455655 46678888776
No 30
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=99.78 E-value=3.5e-18 Score=124.91 Aligned_cols=93 Identities=17% Similarity=0.536 Sum_probs=79.7
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC----CeEEEEEECCCCHHHHHHCCCCCCCEEEEEEC
Q 026887 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP----EIVFLKVNFDENKPMCKSLNVKVLPYFHFYRG 174 (231)
Q Consensus 99 s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~ 174 (231)
+.++|++.+.+ + +++|+||++||++|+.+.|.+.++++++. ++.++++|++++..++++|+|.++||+++|++
T Consensus 6 ~~~~f~~~~~~--~-~~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~Pt~~~~~~ 82 (102)
T cd03005 6 TEDNFDHHIAE--G-NHFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHRELCSEFQVRGYPTLLLFKD 82 (102)
T ss_pred CHHHHHHHhhc--C-CEEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCChhhHhhcCCCcCCEEEEEeC
Confidence 56789998865 3 59999999999999999999999998875 48999999999999999999999999999988
Q ss_pred CCceEEEEecCccCHHHHHHHH
Q 026887 175 AHGQLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 175 g~~~~~~~~g~~~~~~~l~~~l 196 (231)
|+ .+..+.|. .+.++|.++|
T Consensus 83 g~-~~~~~~G~-~~~~~l~~~i 102 (102)
T cd03005 83 GE-KVDKYKGT-RDLDSLKEFV 102 (102)
T ss_pred CC-eeeEeeCC-CCHHHHHhhC
Confidence 76 77777774 4556776653
No 31
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=99.78 E-value=3.3e-18 Score=127.44 Aligned_cols=99 Identities=19% Similarity=0.330 Sum_probs=82.3
Q ss_pred CChHHHHHHHHh-cCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC-CHHHHH-HCCCCCCCEEEEE
Q 026887 98 HSTQEFLEALSQ-AGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-NKPMCK-SLNVKVLPYFHFY 172 (231)
Q Consensus 98 ~s~~~~~~~l~~-~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~-~~~l~~-~~~i~~~Pt~~~~ 172 (231)
.+.++|+..+.. ..+++++|+||++||++|+.+.|.++++++++. ++.++.||++. +..++. .++|+++||+++|
T Consensus 6 ~~~~~~~~~~~~~~~~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~~~~~~~~~~~~v~~~Pti~~f 85 (109)
T cd02993 6 LSRAEIEALAKGERRNQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADGEQREFAKEELQLKSFPTILFF 85 (109)
T ss_pred ccHHHHHHHHhhhhcCCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCccchhhHHhhcCCCcCCEEEEE
Confidence 456788887753 247899999999999999999999999999886 38999999998 577886 5999999999999
Q ss_pred ECCCceEEEEecCccCHHHHHHHH
Q 026887 173 RGAHGQLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 173 ~~g~~~~~~~~g~~~~~~~l~~~l 196 (231)
++|+.....+.|...+.+.|..+|
T Consensus 86 ~~~~~~~~~y~g~~~~~~~l~~f~ 109 (109)
T cd02993 86 PKNSRQPIKYPSEQRDVDSLLMFV 109 (109)
T ss_pred cCCCCCceeccCCCCCHHHHHhhC
Confidence 988767777887546767777654
No 32
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=99.78 E-value=2.4e-18 Score=127.94 Aligned_cols=90 Identities=10% Similarity=0.120 Sum_probs=78.4
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCC--ChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEEEECC
Q 026887 99 STQEFLEALSQAGDRLVIVEFYGTW--CASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGA 175 (231)
Q Consensus 99 s~~~~~~~l~~~~~k~vlv~F~a~w--C~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g 175 (231)
+.++|++.++. +..++|.||++| |++|+.+.|.+++++++|++ +.|++||++++++++.+|+|+++||+++|++|
T Consensus 16 ~~~~~~~~~~~--~~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~v~f~kVdid~~~~la~~f~V~sIPTli~fkdG 93 (111)
T cd02965 16 DAATLDDWLAA--GGDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGRFRAAVVGRADEQALAARFGVLRTPALLFFRDG 93 (111)
T ss_pred ccccHHHHHhC--CCCEEEEecCCcccCcchhhhHhHHHHHHHHCCCcEEEEEEECCCCHHHHHHcCCCcCCEEEEEECC
Confidence 35677777744 789999999997 99999999999999999987 88999999999999999999999999999998
Q ss_pred CceEEEEecCccCHHHH
Q 026887 176 HGQLESFSCSLAKFQKI 192 (231)
Q Consensus 176 ~~~~~~~~g~~~~~~~l 192 (231)
+ .+..+.|. .+.+++
T Consensus 94 k-~v~~~~G~-~~~~e~ 108 (111)
T cd02965 94 R-YVGVLAGI-RDWDEY 108 (111)
T ss_pred E-EEEEEeCc-cCHHHH
Confidence 6 88888774 344554
No 33
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=99.78 E-value=7.7e-18 Score=140.47 Aligned_cols=107 Identities=14% Similarity=0.288 Sum_probs=90.5
Q ss_pred eEEeCChHHHHHHHHhc---CCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEE
Q 026887 94 MIDIHSTQEFLEALSQA---GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYF 169 (231)
Q Consensus 94 ~~~i~s~~~~~~~l~~~---~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~ 169 (231)
++++ +.++|++.+... .+++++|+|||+||++|+.+.|.++++++++++ +.++++|++++++++++|+|.++||+
T Consensus 32 Vv~L-t~~nF~~~v~~~~~~~~~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~~v~~~~VD~~~~~~l~~~~~I~~~PTl 110 (224)
T PTZ00443 32 LVLL-NDKNFEKLTQASTGATTGPWFVKFYAPWCSHCRKMAPAWERLAKALKGQVNVADLDATRALNLAKRFAIKGYPTL 110 (224)
T ss_pred cEEC-CHHHHHHHHhhhcccCCCCEEEEEECCCChHHHHHHHHHHHHHHHcCCCeEEEEecCcccHHHHHHcCCCcCCEE
Confidence 4444 688999988643 258999999999999999999999999999986 89999999999999999999999999
Q ss_pred EEEECCCceEEEEecCccCHHHHHHHHHHhhcCC
Q 026887 170 HFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDR 203 (231)
Q Consensus 170 ~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~~~ 203 (231)
++|++|+ ...+.++..+.++|.+++++.....
T Consensus 111 ~~f~~G~--~v~~~~G~~s~e~L~~fi~~~~~~~ 142 (224)
T PTZ00443 111 LLFDKGK--MYQYEGGDRSTEKLAAFALGDFKKA 142 (224)
T ss_pred EEEECCE--EEEeeCCCCCHHHHHHHHHHHHHhh
Confidence 9999854 4445555577899999999887543
No 34
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=99.77 E-value=1.3e-17 Score=130.18 Aligned_cols=100 Identities=20% Similarity=0.357 Sum_probs=82.4
Q ss_pred HHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCC--HHHHHHCCCCCCCEEEEEECCCc
Q 026887 101 QEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDEN--KPMCKSLNVKVLPYFHFYRGAHG 177 (231)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~--~~l~~~~~i~~~Pt~~~~~~g~~ 177 (231)
.+|++.+.. ++++||+|||+||++|+.+.|.++++++++.+ +.|+.||++.. ..++++|+|.++||++||+.++.
T Consensus 11 ~~~~~a~~~--gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~~~~~v~v~vd~~~~~~~~~~~~V~~iPt~v~~~~~G~ 88 (142)
T cd02950 11 TPPEVALSN--GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGDQVNFVMLNVDNPKWLPEIDRYRVDGIPHFVFLDREGN 88 (142)
T ss_pred CCHHHHHhC--CCEEEEEEECCcCHHHHHhHHHHHHHHHHhccCeeEEEEEcCCcccHHHHHHcCCCCCCEEEEECCCCC
Confidence 456666654 89999999999999999999999999999864 78888888754 58899999999999999964333
Q ss_pred eEEEEecCccCHHHHHHHHHHhhcCC
Q 026887 178 QLESFSCSLAKFQKIKEAIALHNTDR 203 (231)
Q Consensus 178 ~~~~~~g~~~~~~~l~~~l~~~~~~~ 203 (231)
.+.++.|. ...++|++.|+++....
T Consensus 89 ~v~~~~G~-~~~~~l~~~l~~l~~~~ 113 (142)
T cd02950 89 EEGQSIGL-QPKQVLAQNLDALVAGE 113 (142)
T ss_pred EEEEEeCC-CCHHHHHHHHHHHHcCC
Confidence 77777764 55688999999988644
No 35
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=99.77 E-value=8.4e-18 Score=123.08 Aligned_cols=96 Identities=19% Similarity=0.428 Sum_probs=82.8
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCc
Q 026887 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHG 177 (231)
Q Consensus 99 s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~ 177 (231)
+.++|++.+.+. +++++|+||++||++|+.+.|.+.++++++++ +.++.+|++++.+++++|+|+++||+++|++|+.
T Consensus 6 ~~~~~~~~i~~~-~~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~i~~~P~~~~~~~~~~ 84 (103)
T cd03001 6 TDSNFDKKVLNS-DDVWLVEFYAPWCGHCKNLAPEWKKAAKALKGIVKVGAVDADVHQSLAQQYGVRGFPTIKVFGAGKN 84 (103)
T ss_pred CHHhHHHHHhcC-CCcEEEEEECCCCHHHHHHhHHHHHHHHHhcCCceEEEEECcchHHHHHHCCCCccCEEEEECCCCc
Confidence 577898888763 67799999999999999999999999999865 8999999999999999999999999999998854
Q ss_pred eEEEEecCccCHHHHHHHH
Q 026887 178 QLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 178 ~~~~~~g~~~~~~~l~~~l 196 (231)
....+.|. .+.++|.+++
T Consensus 85 ~~~~~~g~-~~~~~l~~~~ 102 (103)
T cd03001 85 SPQDYQGG-RTAKAIVSAA 102 (103)
T ss_pred ceeecCCC-CCHHHHHHHh
Confidence 66667764 5667777764
No 36
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=99.77 E-value=6.6e-18 Score=123.07 Aligned_cols=97 Identities=24% Similarity=0.495 Sum_probs=85.6
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC---eEEEEEECCCCHHHHHHCCCCCCCEEEEEECC
Q 026887 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE---IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGA 175 (231)
Q Consensus 99 s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g 175 (231)
+.++|++.+. ++++++|+||++||++|+.+.+.++++++.+++ +.++.+|++++..++++|+|.++|++++|++|
T Consensus 2 ~~~~~~~~~~--~~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~~~~~~~ 79 (102)
T TIGR01126 2 TASNFDDIVL--SNKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTIKFFPKG 79 (102)
T ss_pred chhhHHHHhc--cCCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEEEEecCC
Confidence 4578888886 489999999999999999999999999998874 99999999999999999999999999999988
Q ss_pred CceEEEEecCccCHHHHHHHHHHh
Q 026887 176 HGQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 176 ~~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
+ .+..+.|. .+.++|+++|+++
T Consensus 80 ~-~~~~~~g~-~~~~~l~~~i~~~ 101 (102)
T TIGR01126 80 K-KPVDYEGG-RDLEAIVEFVNEK 101 (102)
T ss_pred C-cceeecCC-CCHHHHHHHHHhc
Confidence 6 46677764 5678899999875
No 37
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=99.76 E-value=2.9e-18 Score=126.37 Aligned_cols=94 Identities=19% Similarity=0.382 Sum_probs=77.1
Q ss_pred HHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHH---HHHHHHCC-CeEEEEEECCC----CHHHHHHCCCCCCCEEEEE
Q 026887 101 QEFLEALSQAGDRLVIVEFYGTWCASCRALFPKL---CRTAEEHP-EIVFLKVNFDE----NKPMCKSLNVKVLPYFHFY 172 (231)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~-~v~~~~Vd~d~----~~~l~~~~~i~~~Pt~~~~ 172 (231)
++|.+++++ +++++|+||++||++|+.+.+.+ .++++.+. ++.++.||+++ ..+++++|+|.++||++||
T Consensus 2 ~~~~~~~~~--~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti~~~ 79 (104)
T cd02953 2 AALAQALAQ--GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKKDVVLLRADWTKNDPEITALLKRFGVFGPPTYLFY 79 (104)
T ss_pred HHHHHHHHc--CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhCCeEEEEEecCCCCHHHHHHHHHcCCCCCCEEEEE
Confidence 567887766 89999999999999999999987 57777777 69999999987 5789999999999999999
Q ss_pred EC-CCceEEEEecCccCHHHHHHHHH
Q 026887 173 RG-AHGQLESFSCSLAKFQKIKEAIA 197 (231)
Q Consensus 173 ~~-g~~~~~~~~g~~~~~~~l~~~l~ 197 (231)
++ ++..+.++.| ..+.++|.++|+
T Consensus 80 ~~~~g~~~~~~~G-~~~~~~l~~~l~ 104 (104)
T cd02953 80 GPGGEPEPLRLPG-FLTADEFLEALE 104 (104)
T ss_pred CCCCCCCCccccc-ccCHHHHHHHhC
Confidence 85 2335566665 466688887763
No 38
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=99.76 E-value=2.3e-17 Score=119.77 Aligned_cols=98 Identities=22% Similarity=0.539 Sum_probs=84.7
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC-CeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCc
Q 026887 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHG 177 (231)
Q Consensus 99 s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~ 177 (231)
+.++|.+.+.+. +++++|+||++||++|+.+.+.+.+++++++ ++.|+.+|++++..++++|+|.++||+++|++|+
T Consensus 2 ~~~~~~~~~~~~-~~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~v~~~P~~~~~~~g~- 79 (101)
T TIGR01068 2 TDANFDETIASS-DKPVLVDFWAPWCGPCKMIAPILEELAKEYEGKVKFVKLNVDENPDIAAKYGIRSIPTLLLFKNGK- 79 (101)
T ss_pred CHHHHHHHHhhc-CCcEEEEEECCCCHHHHHhCHHHHHHHHHhcCCeEEEEEECCCCHHHHHHcCCCcCCEEEEEeCCc-
Confidence 357888888653 6799999999999999999999999998887 4999999999999999999999999999998875
Q ss_pred eEEEEecCccCHHHHHHHHHHh
Q 026887 178 QLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 178 ~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
....+.|. .+.++|.++|+++
T Consensus 80 ~~~~~~g~-~~~~~l~~~l~~~ 100 (101)
T TIGR01068 80 EVDRSVGA-LPKAALKQLINKN 100 (101)
T ss_pred EeeeecCC-CCHHHHHHHHHhh
Confidence 66666654 5568899998865
No 39
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=99.75 E-value=2e-17 Score=121.21 Aligned_cols=97 Identities=23% Similarity=0.551 Sum_probs=81.3
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC---CeEEEEEECCC--CHHHHHHCCCCCCCEE
Q 026887 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP---EIVFLKVNFDE--NKPMCKSLNVKVLPYF 169 (231)
Q Consensus 95 ~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~Vd~d~--~~~l~~~~~i~~~Pt~ 169 (231)
+++ +.++|++.+++ +++++|+||++||++|+.+.|.++++++.++ .+.++++|+++ +..++++++|.++||+
T Consensus 3 ~~l-~~~~~~~~~~~--~~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~~i~~~Pt~ 79 (104)
T cd02997 3 VHL-TDEDFRKFLKK--EKHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTKPEHDALKEEYNVKGFPTF 79 (104)
T ss_pred EEe-chHhHHHHHhh--CCCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCCCccHHHHHhCCCccccEE
Confidence 344 45688888876 6799999999999999999999999998875 38899999998 8999999999999999
Q ss_pred EEEECCCceEEEEecCccCHHHHHHHH
Q 026887 170 HFYRGAHGQLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 170 ~~~~~g~~~~~~~~g~~~~~~~l~~~l 196 (231)
++|++|+ .+..+.|. .+.++|.++|
T Consensus 80 ~~~~~g~-~~~~~~g~-~~~~~l~~~l 104 (104)
T cd02997 80 KYFENGK-FVEKYEGE-RTAEDIIEFM 104 (104)
T ss_pred EEEeCCC-eeEEeCCC-CCHHHHHhhC
Confidence 9999876 67777764 4567776653
No 40
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=99.74 E-value=3.9e-17 Score=119.04 Aligned_cols=92 Identities=21% Similarity=0.450 Sum_probs=79.0
Q ss_pred HHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEE
Q 026887 103 FLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLES 181 (231)
Q Consensus 103 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~ 181 (231)
++..+.+ .+++++++||++||+.|+.+.|.++++++++++ +.++++|++++++++++++|.++||+++|++|+ .+.+
T Consensus 5 ~~~~~~~-~~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~~v~~~~id~d~~~~l~~~~~v~~vPt~~i~~~g~-~v~~ 82 (97)
T cd02949 5 LRKLYHE-SDRLILVLYTSPTCGPCRTLKPILNKVIDEFDGAVHFVEIDIDEDQEIAEAAGIMGTPTVQFFKDKE-LVKE 82 (97)
T ss_pred HHHHHHh-CCCeEEEEEECCCChhHHHHHHHHHHHHHHhCCceEEEEEECCCCHHHHHHCCCeeccEEEEEECCe-EEEE
Confidence 4455555 489999999999999999999999999999874 999999999999999999999999999998865 7777
Q ss_pred EecCccCHHHHHHHHH
Q 026887 182 FSCSLAKFQKIKEAIA 197 (231)
Q Consensus 182 ~~g~~~~~~~l~~~l~ 197 (231)
+.|. ...++|.++|+
T Consensus 83 ~~g~-~~~~~~~~~l~ 97 (97)
T cd02949 83 ISGV-KMKSEYREFIE 97 (97)
T ss_pred EeCC-ccHHHHHHhhC
Confidence 7774 44577877763
No 41
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=99.73 E-value=3.4e-17 Score=119.80 Aligned_cols=96 Identities=24% Similarity=0.447 Sum_probs=79.7
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC---eEEEEEECCCCHHHHHHCCCCCCCEEEEEEC
Q 026887 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE---IVFLKVNFDENKPMCKSLNVKVLPYFHFYRG 174 (231)
Q Consensus 98 ~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~ 174 (231)
.+.++|++.+.+. +++++|+||++||++|+.+.|.++++++.+++ +.++++|++++ +++..+++.++||+++|++
T Consensus 5 l~~~~f~~~i~~~-~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~-~~~~~~~~~~~Pt~~~~~~ 82 (104)
T cd02995 5 VVGKNFDEVVLDS-DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATAN-DVPSEFVVDGFPTILFFPA 82 (104)
T ss_pred EchhhhHHHHhCC-CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcch-hhhhhccCCCCCEEEEEcC
Confidence 3467899988774 68999999999999999999999999998764 89999999987 6888999999999999988
Q ss_pred CC-ceEEEEecCccCHHHHHHHH
Q 026887 175 AH-GQLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 175 g~-~~~~~~~g~~~~~~~l~~~l 196 (231)
|+ .....+.|. .+.+.|.++|
T Consensus 83 ~~~~~~~~~~g~-~~~~~l~~fi 104 (104)
T cd02995 83 GDKSNPIKYEGD-RTLEDLIKFI 104 (104)
T ss_pred CCcCCceEccCC-cCHHHHHhhC
Confidence 76 345566664 5567776654
No 42
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=99.73 E-value=5.7e-17 Score=121.72 Aligned_cols=95 Identities=16% Similarity=0.153 Sum_probs=79.2
Q ss_pred HHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEE--
Q 026887 103 FLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLE-- 180 (231)
Q Consensus 103 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~-- 180 (231)
|.+.+.+ +..++|+||++||++|+.+.|.+++++++++.+.+..+|++++++++++|+|.++||+++|++|+ ...
T Consensus 15 ~~~~l~~--~~~vvv~f~a~wC~~C~~~~~~l~~la~~~~~i~~~~vd~d~~~~l~~~~~v~~vPt~~i~~~g~-~~~~~ 91 (113)
T cd02975 15 FFKEMKN--PVDLVVFSSKEGCQYCEVTKQLLEELSELSDKLKLEIYDFDEDKEKAEKYGVERVPTTIFLQDGG-KDGGI 91 (113)
T ss_pred HHHHhCC--CeEEEEEeCCCCCCChHHHHHHHHHHHHhcCceEEEEEeCCcCHHHHHHcCCCcCCEEEEEeCCe-ecceE
Confidence 5455543 67799999999999999999999999998877999999999999999999999999999999864 222
Q ss_pred EEecCccCHHHHHHHHHHhhc
Q 026887 181 SFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 181 ~~~g~~~~~~~l~~~l~~~~~ 201 (231)
++.| .....++.++|+....
T Consensus 92 ~~~G-~~~~~el~~~i~~i~~ 111 (113)
T cd02975 92 RYYG-LPAGYEFASLIEDIVR 111 (113)
T ss_pred EEEe-cCchHHHHHHHHHHHh
Confidence 4555 3455889999987653
No 43
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=99.73 E-value=9.8e-17 Score=122.06 Aligned_cols=96 Identities=16% Similarity=0.183 Sum_probs=79.4
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCH-----------HHHHHCC----
Q 026887 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK-----------PMCKSLN---- 162 (231)
Q Consensus 98 ~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~-----------~l~~~~~---- 162 (231)
.+.+++.+.+++ ++.++|+|+++||++|+.+.|.+.+++++ .++.++.||++.+. ++.++|+
T Consensus 11 it~~~~~~~i~~--~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~-~~~~~y~vdvd~~~~~~~~~~~~~~~~~~~~~i~~~ 87 (122)
T TIGR01295 11 TTVVRALEALDK--KETATFFIGRKTCPYCRKFSGTLSGVVAQ-TKAPIYYIDSENNGSFEMSSLNDLTAFRSRFGIPTS 87 (122)
T ss_pred cCHHHHHHHHHc--CCcEEEEEECCCChhHHHHhHHHHHHHHh-cCCcEEEEECCCccCcCcccHHHHHHHHHHcCCccc
Confidence 457789999976 78899999999999999999999999998 45778888887432 4556665
Q ss_pred CCCCCEEEEEECCCceEEEEecCccCHHHHHHHHH
Q 026887 163 VKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIA 197 (231)
Q Consensus 163 i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~ 197 (231)
|.++||+++|++|+ .+.+..|+....++|.+++.
T Consensus 88 i~~~PT~v~~k~Gk-~v~~~~G~~~~~~~l~~~~~ 121 (122)
T TIGR01295 88 FMGTPTFVHITDGK-QVSVRCGSSTTAQELQDIAA 121 (122)
T ss_pred CCCCCEEEEEeCCe-EEEEEeCCCCCHHHHHHHhh
Confidence 55699999999987 88888887777888888764
No 44
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=99.73 E-value=3.6e-17 Score=119.80 Aligned_cols=96 Identities=24% Similarity=0.531 Sum_probs=80.9
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC---CeEEEEEECCC-CHHHHHHCCCCCCCEEEEEEC
Q 026887 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP---EIVFLKVNFDE-NKPMCKSLNVKVLPYFHFYRG 174 (231)
Q Consensus 99 s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~Vd~d~-~~~l~~~~~i~~~Pt~~~~~~ 174 (231)
+.++|++.+.+ .+++++|+||++||++|+.+.|.++++++.++ ++.++.+|+++ ++.++++|+|.++|++++|++
T Consensus 6 ~~~~~~~~~~~-~~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~~~i~~~P~~~~~~~ 84 (105)
T cd02998 6 TDSNFDKVVGD-DKKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADEANKDLAKKYGVSGFPTLKFFPK 84 (105)
T ss_pred chhcHHHHhcC-CCCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCCcchhhHHhCCCCCcCEEEEEeC
Confidence 45788887765 36799999999999999999999999999875 49999999999 999999999999999999998
Q ss_pred CCceEEEEecCccCHHHHHHHH
Q 026887 175 AHGQLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 175 g~~~~~~~~g~~~~~~~l~~~l 196 (231)
|+.....+.|. .+.++|.++|
T Consensus 85 ~~~~~~~~~g~-~~~~~l~~~i 105 (105)
T cd02998 85 GSTEPVKYEGG-RDLEDLVKFV 105 (105)
T ss_pred CCCCccccCCc-cCHHHHHhhC
Confidence 86455666654 5567777654
No 45
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=99.73 E-value=4.3e-17 Score=123.11 Aligned_cols=97 Identities=20% Similarity=0.479 Sum_probs=79.9
Q ss_pred EeCChHHHHHHHHhcCCCeEEEEEEc-------CCChhhHhhhHHHHHHHHHCC-CeEEEEEECCC-------CHHHHHH
Q 026887 96 DIHSTQEFLEALSQAGDRLVIVEFYG-------TWCASCRALFPKLCRTAEEHP-EIVFLKVNFDE-------NKPMCKS 160 (231)
Q Consensus 96 ~i~s~~~~~~~l~~~~~k~vlv~F~a-------~wC~~C~~~~p~l~~l~~~~~-~v~~~~Vd~d~-------~~~l~~~ 160 (231)
.+.+.++|.+.+...++++++|+||| +||++|+.+.|.++++.++++ ++.|++||+++ +.++..+
T Consensus 5 ~~~~~~~f~~~i~~~~~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~~~v~fv~Vdvd~~~~w~d~~~~~~~~ 84 (119)
T cd02952 5 AVRGYEEFLKLLKSHEGKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAPEDCVFIYCDVGDRPYWRDPNNPFRTD 84 (119)
T ss_pred cccCHHHHHHHHHhcCCCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCCCCCEEEEEEcCCcccccCcchhhHhc
Confidence 46788999999987667999999999 999999999999999999999 69999999986 4589999
Q ss_pred CCCC-CCCEEEEEECCCceEEEEecCccCHHHHHHH
Q 026887 161 LNVK-VLPYFHFYRGAHGQLESFSCSLAKFQKIKEA 195 (231)
Q Consensus 161 ~~i~-~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~ 195 (231)
++|. ++||+++|++|+ ++..-.. .+.+.+..+
T Consensus 85 ~~I~~~iPT~~~~~~~~-~l~~~~c--~~~~~~~~~ 117 (119)
T cd02952 85 PKLTTGVPTLLRWKTPQ-RLVEDEC--LQADLVEMF 117 (119)
T ss_pred cCcccCCCEEEEEcCCc-eecchhh--cCHHHHHHh
Confidence 9999 999999997765 4443333 233444443
No 46
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=99.72 E-value=7.2e-17 Score=116.42 Aligned_cols=94 Identities=24% Similarity=0.536 Sum_probs=80.8
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHC---CCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECC
Q 026887 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH---PEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGA 175 (231)
Q Consensus 99 s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~---~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g 175 (231)
+.++|.+.+.+ +++++|+||++||++|+.+.+.+.++++.+ .++.++.+|++++..++++|+|.++||+++|+++
T Consensus 4 ~~~~~~~~i~~--~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~~Pt~~~~~~~ 81 (101)
T cd02961 4 TDDNFDELVKD--SKDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTANNDLCSEYGVRGYPTIKLFPNG 81 (101)
T ss_pred cHHHHHHHHhC--CCcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccchHHHHHhCCCCCCCEEEEEcCC
Confidence 45789998877 559999999999999999999999999888 4599999999999999999999999999999887
Q ss_pred CceEEEEecCccCHHHHHHH
Q 026887 176 HGQLESFSCSLAKFQKIKEA 195 (231)
Q Consensus 176 ~~~~~~~~g~~~~~~~l~~~ 195 (231)
+....++.|. .+.++|.++
T Consensus 82 ~~~~~~~~g~-~~~~~i~~~ 100 (101)
T cd02961 82 SKEPVKYEGP-RTLESLVEF 100 (101)
T ss_pred CcccccCCCC-cCHHHHHhh
Confidence 5466777764 455666654
No 47
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=99.72 E-value=1.3e-16 Score=130.40 Aligned_cols=103 Identities=19% Similarity=0.325 Sum_probs=84.2
Q ss_pred CCCeEEeCChHHHHHHHHhc-CCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEE
Q 026887 91 APNMIDIHSTQEFLEALSQA-GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYF 169 (231)
Q Consensus 91 ~~~~~~i~s~~~~~~~l~~~-~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~ 169 (231)
...+.+|+ .++|...+... ++.+|||+||++||++|+.+.|.+.+++++|++++|++||+++. ..+|++.++||+
T Consensus 81 ~G~v~eis-~~~f~~eV~~as~~~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~~vkFvkI~ad~~---~~~~~i~~lPTl 156 (192)
T cd02988 81 FGEVYEIS-KPDYVREVTEASKDTWVVVHLYKDGIPLCRLLNQHLSELARKFPDTKFVKIISTQC---IPNYPDKNLPTI 156 (192)
T ss_pred CCeEEEeC-HHHHHHHHHhcCCCCEEEEEEECCCCchHHHHHHHHHHHHHHCCCCEEEEEEhHHh---HhhCCCCCCCEE
Confidence 46677785 56777766553 35699999999999999999999999999999999999999864 589999999999
Q ss_pred EEEECCCceEEEEecC------ccCHHHHHHHHHH
Q 026887 170 HFYRGAHGQLESFSCS------LAKFQKIKEAIAL 198 (231)
Q Consensus 170 ~~~~~g~~~~~~~~g~------~~~~~~l~~~l~~ 198 (231)
++|++|+ .+.++.|. ..+.+.|+.+|.+
T Consensus 157 liyk~G~-~v~~ivG~~~~gg~~~~~~~lE~~L~~ 190 (192)
T cd02988 157 LVYRNGD-IVKQFIGLLEFGGMNTTMEDLEWLLVQ 190 (192)
T ss_pred EEEECCE-EEEEEeCchhhCCCCCCHHHHHHHHHh
Confidence 9999987 77777762 3455666666654
No 48
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=99.71 E-value=9.5e-17 Score=118.40 Aligned_cols=93 Identities=17% Similarity=0.364 Sum_probs=77.8
Q ss_pred HHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC----CeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCC
Q 026887 101 QEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP----EIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAH 176 (231)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~ 176 (231)
++|++. .+ +++++|+||++||++|+.+.|.+++++++++ ++.++++|+++++.++++|+|.++||+++|++|
T Consensus 7 ~~~~~~-~~--~~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~~~~~~~~~I~~~Pt~~l~~~~- 82 (104)
T cd03000 7 DSFKDV-RK--EDIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAYSSIASEFGVRGYPTIKLLKGD- 82 (104)
T ss_pred hhhhhh-cc--CCeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccCHhHHhhcCCccccEEEEEcCC-
Confidence 566663 33 6799999999999999999999999998873 388999999999999999999999999999764
Q ss_pred ceEEEEecCccCHHHHHHHHHHh
Q 026887 177 GQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 177 ~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
....+.| ..+.++|.+++++.
T Consensus 83 -~~~~~~G-~~~~~~l~~~~~~~ 103 (104)
T cd03000 83 -LAYNYRG-PRTKDDIVEFANRV 103 (104)
T ss_pred -CceeecC-CCCHHHHHHHHHhh
Confidence 4455666 46678999988764
No 49
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=99.71 E-value=1.7e-16 Score=120.76 Aligned_cols=100 Identities=13% Similarity=0.215 Sum_probs=80.7
Q ss_pred hHHHHHHHHhcCC-CeEEEEEEcCCChhhHhhhHHHH---HHHHHCC-CeEEEEEECCCC-------------HHHHHHC
Q 026887 100 TQEFLEALSQAGD-RLVIVEFYGTWCASCRALFPKLC---RTAEEHP-EIVFLKVNFDEN-------------KPMCKSL 161 (231)
Q Consensus 100 ~~~~~~~l~~~~~-k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~-~v~~~~Vd~d~~-------------~~l~~~~ 161 (231)
.+++++++++ + ++++|+||++||++|+.+.+.+. ++.+.+. ++.++.+|+++. .+++.+|
T Consensus 3 ~~~~~~a~~~--~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~~i~~d~~~~~~~~~~~~~~~~~l~~~~ 80 (125)
T cd02951 3 YEDLAEAAAD--GKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIRAHFVVVYINIDGDKEVTDFDGEALSEKELARKY 80 (125)
T ss_pred HHHHHHHHHc--CCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHHhheEEEEEEccCCceeeccCCCCccHHHHHHHc
Confidence 4567777766 7 99999999999999999999885 5555554 588999999864 6899999
Q ss_pred CCCCCCEEEEEECC-CceEEEEecCccCHHHHHHHHHHhhcC
Q 026887 162 NVKVLPYFHFYRGA-HGQLESFSCSLAKFQKIKEAIALHNTD 202 (231)
Q Consensus 162 ~i~~~Pt~~~~~~g-~~~~~~~~g~~~~~~~l~~~l~~~~~~ 202 (231)
+|.++||++||+++ +..+.++.|. .+.+++.+.|+.....
T Consensus 81 ~v~~~Pt~~~~~~~gg~~~~~~~G~-~~~~~~~~~l~~~~~~ 121 (125)
T cd02951 81 RVRFTPTVIFLDPEGGKEIARLPGY-LPPDEFLAYLEYVQEK 121 (125)
T ss_pred CCccccEEEEEcCCCCceeEEecCC-CCHHHHHHHHHHHHhh
Confidence 99999999999886 4466666664 5668999999987653
No 50
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=99.71 E-value=1.7e-16 Score=144.58 Aligned_cols=104 Identities=15% Similarity=0.299 Sum_probs=87.1
Q ss_pred EEeCChHHHHHHHH-hcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC--eEEEEEECCCCH-HHH-HHCCCCCCCEE
Q 026887 95 IDIHSTQEFLEALS-QAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE--IVFLKVNFDENK-PMC-KSLNVKVLPYF 169 (231)
Q Consensus 95 ~~i~s~~~~~~~l~-~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--v~~~~Vd~d~~~-~l~-~~~~i~~~Pt~ 169 (231)
+...+.++|++.++ ...++++||+|||+||++|+.+.|.++++++++.+ +.|++||+|.+. +++ ++|+|.++||+
T Consensus 353 Vv~L~~~nf~~~v~~~~~~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~~~~~~~~~~~I~~~PTi 432 (463)
T TIGR00424 353 VVSLSRPGIENLLKLEERKEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFPTI 432 (463)
T ss_pred eEECCHHHHHHHHhhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCCccHHHHHHcCCCccceE
Confidence 33456778999986 44589999999999999999999999999999864 899999999764 454 78999999999
Q ss_pred EEEECCCceEEEEecCccCHHHHHHHHHH
Q 026887 170 HFYRGAHGQLESFSCSLAKFQKIKEAIAL 198 (231)
Q Consensus 170 ~~~~~g~~~~~~~~g~~~~~~~l~~~l~~ 198 (231)
+||++|+.....|.++..+.+.|..+|+.
T Consensus 433 i~Fk~g~~~~~~Y~~g~R~~e~L~~Fv~~ 461 (463)
T TIGR00424 433 LFFPKHSSRPIKYPSEKRDVDSLMSFVNL 461 (463)
T ss_pred EEEECCCCCceeCCCCCCCHHHHHHHHHh
Confidence 99999875556676666888999999875
No 51
>PTZ00062 glutaredoxin; Provisional
Probab=99.70 E-value=2.1e-16 Score=129.93 Aligned_cols=93 Identities=13% Similarity=0.138 Sum_probs=83.7
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCc
Q 026887 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHG 177 (231)
Q Consensus 98 ~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~ 177 (231)
.+.+++.+.++.. .+.++++|||+||++|+.+.|.+.+++++|+++.|++||.+ |+|.++||++||++|+
T Consensus 4 ~~~ee~~~~i~~~-~g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~~~~F~~V~~d--------~~V~~vPtfv~~~~g~- 73 (204)
T PTZ00062 4 IKKEEKDKLIESN-TGKLVLYVKSSKEPEYEQLMDVCNALVEDFPSLEFYVVNLA--------DANNEYGVFEFYQNSQ- 73 (204)
T ss_pred CCHHHHHHHHhcC-CCcEEEEEeCCCCcchHHHHHHHHHHHHHCCCcEEEEEccc--------cCcccceEEEEEECCE-
Confidence 4678999988752 37799999999999999999999999999999999999988 9999999999999987
Q ss_pred eEEEEecCccCHHHHHHHHHHhhcC
Q 026887 178 QLESFSCSLAKFQKIKEAIALHNTD 202 (231)
Q Consensus 178 ~~~~~~g~~~~~~~l~~~l~~~~~~ 202 (231)
.+.++.| .++.+|...++++.+.
T Consensus 74 ~i~r~~G--~~~~~~~~~~~~~~~~ 96 (204)
T PTZ00062 74 LINSLEG--CNTSTLVSFIRGWAQK 96 (204)
T ss_pred EEeeeeC--CCHHHHHHHHHHHcCC
Confidence 8999988 7788999999988753
No 52
>PLN02309 5'-adenylylsulfate reductase
Probab=99.69 E-value=3.6e-16 Score=142.38 Aligned_cols=106 Identities=16% Similarity=0.291 Sum_probs=89.8
Q ss_pred CeEEeCChHHHHHHHH-hcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECC-CCHHHHH-HCCCCCCC
Q 026887 93 NMIDIHSTQEFLEALS-QAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFD-ENKPMCK-SLNVKVLP 167 (231)
Q Consensus 93 ~~~~i~s~~~~~~~l~-~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d-~~~~l~~-~~~i~~~P 167 (231)
.++. .+.++|++.++ ...++++||+|||+||++|+.|.|.++++++++. ++.|++||++ .+.++++ +|+|.++|
T Consensus 346 ~Vv~-Lt~~nfe~ll~~~~~~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d~~~~~la~~~~~I~~~P 424 (457)
T PLN02309 346 NVVA-LSRAGIENLLKLENRKEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRADGDQKEFAKQELQLGSFP 424 (457)
T ss_pred CcEE-CCHHHHHHHHHhhcCCCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECCCcchHHHHhhCCCceee
Confidence 4443 45779998875 3358999999999999999999999999999986 4999999999 7788886 69999999
Q ss_pred EEEEEECCCceEEEEecCccCHHHHHHHHHHh
Q 026887 168 YFHFYRGAHGQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 168 t~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
|++||++|......|.++..+.+.|.++|+..
T Consensus 425 Til~f~~g~~~~v~Y~~~~R~~~~L~~fv~~~ 456 (457)
T PLN02309 425 TILLFPKNSSRPIKYPSEKRDVDSLLSFVNSL 456 (457)
T ss_pred EEEEEeCCCCCeeecCCCCcCHHHHHHHHHHh
Confidence 99999988766667777678889999999864
No 53
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=99.69 E-value=3.4e-16 Score=117.67 Aligned_cols=78 Identities=26% Similarity=0.537 Sum_probs=68.6
Q ss_pred CChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC---C-eEEEEEECC--CCHHHHHHCCCCCCCEEEE
Q 026887 98 HSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP---E-IVFLKVNFD--ENKPMCKSLNVKVLPYFHF 171 (231)
Q Consensus 98 ~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~-v~~~~Vd~d--~~~~l~~~~~i~~~Pt~~~ 171 (231)
.+.++|++.+.+. +++++|+||++||++|+.+.|.+++++++++ + +.|.++|++ ++.+++++|+|+++||+++
T Consensus 6 l~~~~f~~~i~~~-~~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~~~~~~~~~~~~~i~~~Pt~~l 84 (114)
T cd02992 6 LDAASFNSALLGS-PSAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCADEENVALCRDFGVTGYPTLRY 84 (114)
T ss_pred CCHHhHHHHHhcC-CCeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEeccchhhHHHHHhCCCCCCCEEEE
Confidence 4578999998875 5899999999999999999999999998764 3 889999986 4678999999999999999
Q ss_pred EECCC
Q 026887 172 YRGAH 176 (231)
Q Consensus 172 ~~~g~ 176 (231)
|++|+
T Consensus 85 f~~~~ 89 (114)
T cd02992 85 FPPFS 89 (114)
T ss_pred ECCCC
Confidence 98865
No 54
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=99.67 E-value=4.2e-16 Score=116.99 Aligned_cols=98 Identities=10% Similarity=0.201 Sum_probs=81.5
Q ss_pred eCChHHHHHHHHhcCCCeEEEEEEc--CCCh---hhHhhhHHHHHHHHHCCCeEEEEEEC-----CCCHHHHHHCCCC--
Q 026887 97 IHSTQEFLEALSQAGDRLVIVEFYG--TWCA---SCRALFPKLCRTAEEHPEIVFLKVNF-----DENKPMCKSLNVK-- 164 (231)
Q Consensus 97 i~s~~~~~~~l~~~~~k~vlv~F~a--~wC~---~C~~~~p~l~~l~~~~~~v~~~~Vd~-----d~~~~l~~~~~i~-- 164 (231)
..+.++|++.+.+ ++.+||.||| +||+ +|+.+.|.+.+.+. ++.+++||| +++.+||++|+|+
T Consensus 5 ~L~~~nF~~~v~~--~~~vlV~F~A~~Pwc~k~~~~~~LA~e~~~aa~---~v~lakVd~~d~~~~~~~~L~~~y~I~~~ 79 (116)
T cd03007 5 DLDTVTFYKVIPK--FKYSLVKFDTAYPYGEKHEAFTRLAESSASATD---DLLVAEVGIKDYGEKLNMELGERYKLDKE 79 (116)
T ss_pred ECChhhHHHHHhc--CCcEEEEEeCCCCCCCChHHHHHHHHHHHhhcC---ceEEEEEecccccchhhHHHHHHhCCCcC
Confidence 4568899999977 7899999999 9999 88888888776544 389999999 4578899999999
Q ss_pred CCCEEEEEECCC-ceEEEEecCccCHHHHHHHHHHh
Q 026887 165 VLPYFHFYRGAH-GQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 165 ~~Pt~~~~~~g~-~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
++||+.+|++|+ .....|.|+..+.+.|.++|.++
T Consensus 80 gyPTl~lF~~g~~~~~~~Y~G~~r~~~~lv~~v~~~ 115 (116)
T cd03007 80 SYPVIYLFHGGDFENPVPYSGADVTVDALQRFLKGN 115 (116)
T ss_pred CCCEEEEEeCCCcCCCccCCCCcccHHHHHHHHHhc
Confidence 999999999874 24466777447789999999875
No 55
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=99.67 E-value=7.7e-16 Score=108.87 Aligned_cols=91 Identities=30% Similarity=0.677 Sum_probs=79.5
Q ss_pred HHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEE
Q 026887 102 EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLES 181 (231)
Q Consensus 102 ~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~ 181 (231)
+|++.+.+ +++++|.||++||++|+.+.+.++++.++.+++.++.+|++++.+++++|++.++||+++|++|+ .+..
T Consensus 2 ~~~~~~~~--~~~~ll~~~~~~C~~C~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~v~~~P~~~~~~~g~-~~~~ 78 (93)
T cd02947 2 EFEELIKS--AKPVVVDFWAPWCGPCKAIAPVLEELAEEYPKVKFVKVDVDENPELAEEYGVRSIPTFLFFKNGK-EVDR 78 (93)
T ss_pred chHHHHhc--CCcEEEEEECCCChhHHHhhHHHHHHHHHCCCceEEEEECCCChhHHHhcCcccccEEEEEECCE-EEEE
Confidence 56677766 48999999999999999999999999998778999999999999999999999999999998875 6777
Q ss_pred EecCccCHHHHHHHH
Q 026887 182 FSCSLAKFQKIKEAI 196 (231)
Q Consensus 182 ~~g~~~~~~~l~~~l 196 (231)
+.|. .+.+.|.++|
T Consensus 79 ~~g~-~~~~~l~~~i 92 (93)
T cd02947 79 VVGA-DPKEELEEFL 92 (93)
T ss_pred EecC-CCHHHHHHHh
Confidence 7764 4557787776
No 56
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=2.4e-16 Score=143.21 Aligned_cols=106 Identities=21% Similarity=0.460 Sum_probs=91.4
Q ss_pred CCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC----CeEEEEEECCCCHHHHHHCCCCCCC
Q 026887 92 PNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP----EIVFLKVNFDENKPMCKSLNVKVLP 167 (231)
Q Consensus 92 ~~~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~Vd~d~~~~l~~~~~i~~~P 167 (231)
...+.+.+.++|+..|.. +..++|.||||||+||+++.|.+++.++.+. .+.+++||++++.++|.+|+|+++|
T Consensus 24 ~~~Vl~Lt~dnf~~~i~~--~~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~~~~~~~y~v~gyP 101 (493)
T KOG0190|consen 24 EEDVLVLTKDNFKETING--HEFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEESDLASKYEVRGYP 101 (493)
T ss_pred ccceEEEecccHHHHhcc--CceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchhhhhHhhhcCCCCC
Confidence 445556678899999977 7999999999999999999999998887754 5999999999999999999999999
Q ss_pred EEEEEECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 168 YFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 168 t~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
|+.+|++|. ....|.|+ ...+.|..++.+..+
T Consensus 102 TlkiFrnG~-~~~~Y~G~-r~adgIv~wl~kq~g 133 (493)
T KOG0190|consen 102 TLKIFRNGR-SAQDYNGP-READGIVKWLKKQSG 133 (493)
T ss_pred eEEEEecCC-cceeccCc-ccHHHHHHHHHhccC
Confidence 999999986 45667764 667999999987654
No 57
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=99.62 E-value=3.7e-15 Score=140.19 Aligned_cols=107 Identities=19% Similarity=0.372 Sum_probs=88.6
Q ss_pred CCeEEeCChHHHHHHHHhc--CCCeEEEEEEcCCChhhHhhhHHH---HHHHHHCCCeEEEEEECCCC----HHHHHHCC
Q 026887 92 PNMIDIHSTQEFLEALSQA--GDRLVIVEFYGTWCASCRALFPKL---CRTAEEHPEIVFLKVNFDEN----KPMCKSLN 162 (231)
Q Consensus 92 ~~~~~i~s~~~~~~~l~~~--~~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~~v~~~~Vd~d~~----~~l~~~~~ 162 (231)
..+..+.+.+++++.++++ ++|+|+|+|||+||++|+.+++.+ .++.++++++.++++|++++ .+++++|+
T Consensus 452 ~~~~~i~s~~~l~~~l~~a~~~gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~~~~~v~vDvt~~~~~~~~l~~~~~ 531 (571)
T PRK00293 452 LNFQRIKTVAELDQALAEAKGKGKPVMLDLYADWCVACKEFEKYTFSDPQVQQALADTVLLQADVTANNAEDVALLKHYN 531 (571)
T ss_pred CCceecCCHHHHHHHHHHHHhcCCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhcCCEEEEEECCCCChhhHHHHHHcC
Confidence 4678899999999998753 379999999999999999999876 57888888899999999864 68899999
Q ss_pred CCCCCEEEEEECCCceE--EEEecCccCHHHHHHHHHHh
Q 026887 163 VKVLPYFHFYRGAHGQL--ESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 163 i~~~Pt~~~~~~g~~~~--~~~~g~~~~~~~l~~~l~~~ 199 (231)
+.++||+++|+.+++++ .++.| ..+.+++.+.+++.
T Consensus 532 v~g~Pt~~~~~~~G~~i~~~r~~G-~~~~~~f~~~L~~~ 569 (571)
T PRK00293 532 VLGLPTILFFDAQGQEIPDARVTG-FMDAAAFAAHLRQL 569 (571)
T ss_pred CCCCCEEEEECCCCCCcccccccC-CCCHHHHHHHHHHh
Confidence 99999999997433353 44555 46788999999875
No 58
>PTZ00102 disulphide isomerase; Provisional
Probab=99.62 E-value=3.3e-15 Score=137.44 Aligned_cols=105 Identities=21% Similarity=0.391 Sum_probs=89.2
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC---eEEEEEECCCCHHHHHHCCCCCCCEEEE
Q 026887 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE---IVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (231)
Q Consensus 95 ~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~ 171 (231)
+...+.++|++.+.+ .+++++|+|||+||++|+.+.|.++++++.+++ +.++++|++++...+++++++++||+++
T Consensus 359 v~~l~~~~f~~~v~~-~~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~v~~~Pt~~~ 437 (477)
T PTZ00102 359 VKVVVGNTFEEIVFK-SDKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFSWSAFPTILF 437 (477)
T ss_pred eEEecccchHHHHhc-CCCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCCCcccCeEEE
Confidence 333447889888655 379999999999999999999999999988753 8899999999999999999999999999
Q ss_pred EECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 172 YRGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 172 ~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
|++|+.....+.| ..+.+.|.++|+++..
T Consensus 438 ~~~~~~~~~~~~G-~~~~~~l~~~i~~~~~ 466 (477)
T PTZ00102 438 VKAGERTPIPYEG-ERTVEGFKEFVNKHAT 466 (477)
T ss_pred EECCCcceeEecC-cCCHHHHHHHHHHcCC
Confidence 9988644456666 4677999999999875
No 59
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.62 E-value=6.3e-15 Score=134.48 Aligned_cols=102 Identities=22% Similarity=0.490 Sum_probs=87.7
Q ss_pred eCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC----CeEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q 026887 97 IHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP----EIVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (231)
Q Consensus 97 i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~ 172 (231)
..+.++|++.+++ +++++|+|||+||++|+.+.|.+.++++.+. ++.|++|||+++.++|++|+|.++||+++|
T Consensus 5 ~l~~~~~~~~i~~--~~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt~~~~ 82 (462)
T TIGR01130 5 VLTKDNFDDFIKS--HEFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPTLKIF 82 (462)
T ss_pred ECCHHHHHHHHhc--CCCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccEEEEE
Confidence 4467899999876 7899999999999999999999998887653 499999999999999999999999999999
Q ss_pred ECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 173 RGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 173 ~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
++|+..+..+.|. .+.+.|.+++.+...
T Consensus 83 ~~g~~~~~~~~g~-~~~~~l~~~i~~~~~ 110 (462)
T TIGR01130 83 RNGEDSVSDYNGP-RDADGIVKYMKKQSG 110 (462)
T ss_pred eCCccceeEecCC-CCHHHHHHHHHHhcC
Confidence 9876326677764 567899999988764
No 60
>PTZ00102 disulphide isomerase; Provisional
Probab=99.62 E-value=7.9e-15 Score=134.93 Aligned_cols=102 Identities=22% Similarity=0.483 Sum_probs=87.9
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHC----CCeEEEEEECCCCHHHHHHCCCCCCCEEE
Q 026887 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH----PEIVFLKVNFDENKPMCKSLNVKVLPYFH 170 (231)
Q Consensus 95 ~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~----~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~ 170 (231)
+...+.++|++.+.+ ++.++|+|||+||++|+++.|.++++++.+ .++.+++|||+++.+++++|+|.++||++
T Consensus 34 v~~l~~~~f~~~i~~--~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~~l~~~~~i~~~Pt~~ 111 (477)
T PTZ00102 34 VTVLTDSTFDKFITE--NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEMELAQEFGVRGYPTIK 111 (477)
T ss_pred cEEcchhhHHHHHhc--CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCHHHHHhcCCCcccEEE
Confidence 344567899998866 689999999999999999999999887654 35999999999999999999999999999
Q ss_pred EEECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 171 FYRGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 171 ~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
+|++|+ .+ .+.|. .+.+.|.++++++..
T Consensus 112 ~~~~g~-~~-~y~g~-~~~~~l~~~l~~~~~ 139 (477)
T PTZ00102 112 FFNKGN-PV-NYSGG-RTADGIVSWIKKLTG 139 (477)
T ss_pred EEECCc-eE-EecCC-CCHHHHHHHHHHhhC
Confidence 999976 55 66664 677999999998764
No 61
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=99.60 E-value=1.1e-14 Score=106.72 Aligned_cols=88 Identities=15% Similarity=0.181 Sum_probs=76.0
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCC--CCCEEEEEECCCceEEEEecCccC
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVK--VLPYFHFYRGAHGQLESFSCSLAK 188 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~--~~Pt~~~~~~g~~~~~~~~g~~~~ 188 (231)
++++++.|+++||++|+.+.|.++++++++.+ +.|+.||+++++++++.|++. ++|+++++++.++....+.++..+
T Consensus 12 ~~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~v~f~~vd~~~~~~~~~~~~i~~~~~P~~~~~~~~~~~k~~~~~~~~~ 91 (103)
T cd02982 12 GKPLLVLFYNKDDSESEELRERFKEVAKKFKGKLLFVVVDADDFGRHLEYFGLKEEDLPVIAIINLSDGKKYLMPEEELT 91 (103)
T ss_pred CCCEEEEEEcCChhhHHHHHHHHHHHHHHhCCeEEEEEEchHhhHHHHHHcCCChhhCCEEEEEecccccccCCCccccC
Confidence 68999999999999999999999999999976 999999999999999999999 999999999843333334444347
Q ss_pred HHHHHHHHHHh
Q 026887 189 FQKIKEAIALH 199 (231)
Q Consensus 189 ~~~l~~~l~~~ 199 (231)
.+.|.++|+++
T Consensus 92 ~~~l~~fi~~~ 102 (103)
T cd02982 92 AESLEEFVEDF 102 (103)
T ss_pred HHHHHHHHHhh
Confidence 78999999865
No 62
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=99.57 E-value=4.8e-15 Score=134.78 Aligned_cols=102 Identities=25% Similarity=0.451 Sum_probs=83.9
Q ss_pred EeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC---eEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q 026887 96 DIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE---IVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (231)
Q Consensus 96 ~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~---v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~ 172 (231)
.+.-.++|++++.+ .+|-|+|.|||+||+||+++.|.+++|++.|++ +.++++|.+.|.- ....+.++||+.+|
T Consensus 369 kvvVgknfd~iv~d-e~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~~~vviAKmDaTaNd~--~~~~~~~fPTI~~~ 445 (493)
T KOG0190|consen 369 KVVVGKNFDDIVLD-EGKDVLVEFYAPWCGHCKALAPIYEELAEKYKDDENVVIAKMDATANDV--PSLKVDGFPTILFF 445 (493)
T ss_pred EEEeecCHHHHhhc-cccceEEEEcCcccchhhhhhhHHHHHHHHhcCCCCcEEEEeccccccC--ccccccccceEEEe
Confidence 34446788888876 489999999999999999999999999999874 9999999998754 45677889999999
Q ss_pred ECCCce-EEEEecCccCHHHHHHHHHHhhc
Q 026887 173 RGAHGQ-LESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 173 ~~g~~~-~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
+.|++. +..|.| ..+.++|..+|+++..
T Consensus 446 pag~k~~pv~y~g-~R~le~~~~fi~~~a~ 474 (493)
T KOG0190|consen 446 PAGHKSNPVIYNG-DRTLEDLKKFIKKSAT 474 (493)
T ss_pred cCCCCCCCcccCC-CcchHHHHhhhccCCC
Confidence 988744 455554 5777999999998764
No 63
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.56 E-value=4.5e-15 Score=136.27 Aligned_cols=104 Identities=20% Similarity=0.391 Sum_probs=88.5
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHH---HHHHHCCCeEEEEEECCCC----HHHHHHCCCCCCC
Q 026887 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLC---RTAEEHPEIVFLKVNFDEN----KPMCKSLNVKVLP 167 (231)
Q Consensus 95 ~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~~v~~~~Vd~d~~----~~l~~~~~i~~~P 167 (231)
..+.+.+++++.++++++|+|+|||||+||..||++++... +++.+.+|++++++|.+++ .++.++||+-++|
T Consensus 457 q~~s~~~~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P 536 (569)
T COG4232 457 QPISPLAELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVP 536 (569)
T ss_pred hccCCHHHHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCC
Confidence 67777889999999987789999999999999999999875 6677788999999999976 4688999999999
Q ss_pred EEEEEECCCceEEEEecCccCHHHHHHHHHHh
Q 026887 168 YFHFYRGAHGQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 168 t~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
+++||..++++.....| ..+.+.+.+.+++.
T Consensus 537 ~~~ff~~~g~e~~~l~g-f~~a~~~~~~l~~~ 567 (569)
T COG4232 537 TYLFFGPQGSEPEILTG-FLTADAFLEHLERA 567 (569)
T ss_pred EEEEECCCCCcCcCCcc-eecHHHHHHHHHHh
Confidence 99999855556666554 56778888888764
No 64
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=99.55 E-value=9.8e-15 Score=123.87 Aligned_cols=86 Identities=21% Similarity=0.421 Sum_probs=74.2
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC----eEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCcc
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPE----IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLA 187 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~ 187 (231)
+..++|+||||||++|+++.|.|.++.-++++ +++.++|++..+.++.+|+|+|+||+.||+++ ....|.|+ .
T Consensus 43 ddiW~VdFYAPWC~HCKkLePiWdeVG~elkdig~PikVGKlDaT~f~aiAnefgiqGYPTIk~~kgd--~a~dYRG~-R 119 (468)
T KOG4277|consen 43 DDIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGLPIKVGKLDATRFPAIANEFGIQGYPTIKFFKGD--HAIDYRGG-R 119 (468)
T ss_pred CCeEEEEeechhhhhcccccchhHHhCcchhhcCCceeecccccccchhhHhhhccCCCceEEEecCC--eeeecCCC-c
Confidence 68899999999999999999999998877663 89999999999999999999999999999885 45556664 5
Q ss_pred CHHHHHHHHHHhh
Q 026887 188 KFQKIKEAIALHN 200 (231)
Q Consensus 188 ~~~~l~~~l~~~~ 200 (231)
..+.|.++-.+..
T Consensus 120 ~Kd~iieFAhR~a 132 (468)
T KOG4277|consen 120 EKDAIIEFAHRCA 132 (468)
T ss_pred cHHHHHHHHHhcc
Confidence 5688888876654
No 65
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=99.55 E-value=1.4e-13 Score=118.32 Aligned_cols=96 Identities=15% Similarity=0.261 Sum_probs=78.0
Q ss_pred HHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCC-----------CHHHHHHCCCCCCCEEEEEE
Q 026887 105 EALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE-----------NKPMCKSLNVKVLPYFHFYR 173 (231)
Q Consensus 105 ~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~-----------~~~l~~~~~i~~~Pt~~~~~ 173 (231)
..+++..++++||+||++||++|+.+.|.+.++++++. +.++.|++|. +..++++|+|.++||+++++
T Consensus 159 ~~l~~l~~k~~Lv~F~AswCp~C~~~~P~L~~la~~yg-~~Vi~VsvD~~~~~~fp~~~~d~~la~~~gV~~vPtl~Lv~ 237 (271)
T TIGR02740 159 RVMKDLAKKSGLFFFFKSDCPYCHQQAPILQAFEDRYG-IEVLPVSVDGGPLPGFPNARPDAGQAQQLKIRTVPAVFLAD 237 (271)
T ss_pred HHHHHhcCCeEEEEEECCCCccHHHHhHHHHHHHHHcC-cEEEEEeCCCCccccCCcccCCHHHHHHcCCCcCCeEEEEE
Confidence 44556668999999999999999999999999999984 6677777664 35788999999999999999
Q ss_pred CCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 174 GAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 174 ~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
++++.+.....|..+.++|.+.|.....
T Consensus 238 ~~~~~v~~v~~G~~s~~eL~~~i~~~a~ 265 (271)
T TIGR02740 238 PDPNQFTPIGFGVMSADELVDRILLAAH 265 (271)
T ss_pred CCCCEEEEEEeCCCCHHHHHHHHHHHhc
Confidence 7444776655456778899888886654
No 66
>PHA02125 thioredoxin-like protein
Probab=99.55 E-value=5.6e-14 Score=97.76 Aligned_cols=72 Identities=24% Similarity=0.518 Sum_probs=59.1
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHH
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEA 195 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~ 195 (231)
+++||++||++|+.+.|.++++. +.+++||.+++++++++|+|.++||++ +|+ .+.++.|...+..+|++.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-----~~~~~vd~~~~~~l~~~~~v~~~PT~~---~g~-~~~~~~G~~~~~~~l~~~ 72 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-----YTYVDVDTDEGVELTAKHHIRSLPTLV---NTS-TLDRFTGVPRNVAELKEK 72 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-----heEEeeeCCCCHHHHHHcCCceeCeEE---CCE-EEEEEeCCCCcHHHHHHH
Confidence 78999999999999999998662 568999999999999999999999987 443 667787754555566554
Q ss_pred H
Q 026887 196 I 196 (231)
Q Consensus 196 l 196 (231)
|
T Consensus 73 ~ 73 (75)
T PHA02125 73 L 73 (75)
T ss_pred h
Confidence 4
No 67
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=99.54 E-value=1.5e-14 Score=109.32 Aligned_cols=90 Identities=18% Similarity=0.356 Sum_probs=62.4
Q ss_pred CCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC-CeEEEEEECCCCH-HHHHHCCCCC--CCEEEEEECCCceEEEEec--
Q 026887 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFDENK-PMCKSLNVKV--LPYFHFYRGAHGQLESFSC-- 184 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~Vd~d~~~-~l~~~~~i~~--~Pt~~~~~~g~~~~~~~~g-- 184 (231)
++++++|+|||+||++|+.+.|.+.+...... +..|+.||++... ...++|++.+ +||++||+.++..+.++.+
T Consensus 18 ~~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~~f~~~~Gk~~~~~~~~~ 97 (117)
T cd02959 18 SGKPLMLLIHKTWCGACKALKPKFAESKEISELSHNFVMVNLEDDEEPKDEEFSPDGGYIPRILFLDPSGDVHPEIINKK 97 (117)
T ss_pred cCCcEEEEEeCCcCHHHHHHHHHHhhhHHHHhhcCcEEEEEecCCCCchhhhcccCCCccceEEEECCCCCCchhhccCC
Confidence 38999999999999999999999998765432 3456666666553 4567899987 9999999733335543222
Q ss_pred CccCHHHHHHHHHHhh
Q 026887 185 SLAKFQKIKEAIALHN 200 (231)
Q Consensus 185 ~~~~~~~l~~~l~~~~ 200 (231)
+..+.+.+.+.|+...
T Consensus 98 ~~~~~~~f~~~~~~~~ 113 (117)
T cd02959 98 GNPNYKYFYSSAAQVT 113 (117)
T ss_pred CCccccccCCCHHHHH
Confidence 2344455555555443
No 68
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.53 E-value=1.2e-13 Score=114.95 Aligned_cols=91 Identities=14% Similarity=0.125 Sum_probs=75.3
Q ss_pred cCCCeEEEEEEc---CCChhhHhhhHHHHHHHHHCCCe--EEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceE-EEEe
Q 026887 110 AGDRLVIVEFYG---TWCASCRALFPKLCRTAEEHPEI--VFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQL-ESFS 183 (231)
Q Consensus 110 ~~~k~vlv~F~a---~wC~~C~~~~p~l~~l~~~~~~v--~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~-~~~~ 183 (231)
.++...++.|++ +||++|+.+.|.+++++++++++ .++++|.+++++++++|+|.++||+++|++|+ .+ .++.
T Consensus 17 ~~~~~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~~~~i~~v~vd~~~~~~l~~~~~V~~~Pt~~~f~~g~-~~~~~~~ 95 (215)
T TIGR02187 17 LKNPVEIVVFTDNDKEGCQYCKETEQLLEELSEVSPKLKLEIYDFDTPEDKEEAEKYGVERVPTTIILEEGK-DGGIRYT 95 (215)
T ss_pred cCCCeEEEEEcCCCCCCCCchHHHHHHHHHHHhhCCCceEEEEecCCcccHHHHHHcCCCccCEEEEEeCCe-eeEEEEe
Confidence 345566777888 99999999999999999999764 56777777999999999999999999999986 55 4677
Q ss_pred cCccCHHHHHHHHHHhhcC
Q 026887 184 CSLAKFQKIKEAIALHNTD 202 (231)
Q Consensus 184 g~~~~~~~l~~~l~~~~~~ 202 (231)
|. .+.+++.++|+.+...
T Consensus 96 G~-~~~~~l~~~i~~~~~~ 113 (215)
T TIGR02187 96 GI-PAGYEFAALIEDIVRV 113 (215)
T ss_pred ec-CCHHHHHHHHHHHHHh
Confidence 74 5568899999988643
No 69
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=99.52 E-value=1.6e-13 Score=96.26 Aligned_cols=79 Identities=19% Similarity=0.199 Sum_probs=66.8
Q ss_pred EEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHH
Q 026887 115 VIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIK 193 (231)
Q Consensus 115 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~ 193 (231)
.+..||++||++|+.+.|.+++++++++. +.+++||++++++++++|++.++||+++ +|+ ..+.| ..+.++|.
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~~~~~~~vd~~~~~~~~~~~~v~~vPt~~~--~g~---~~~~G-~~~~~~l~ 75 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGDAVEVEYINVMENPQKAMEYGIMAVPAIVI--NGD---VEFIG-APTKEELV 75 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcCceEEEEEeCccCHHHHHHcCCccCCEEEE--CCE---EEEec-CCCHHHHH
Confidence 46789999999999999999999998864 8999999999999999999999999886 543 24555 35678999
Q ss_pred HHHHHh
Q 026887 194 EAIALH 199 (231)
Q Consensus 194 ~~l~~~ 199 (231)
+.|++.
T Consensus 76 ~~l~~~ 81 (82)
T TIGR00411 76 EAIKKR 81 (82)
T ss_pred HHHHhh
Confidence 888764
No 70
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=99.51 E-value=2.1e-13 Score=103.91 Aligned_cols=98 Identities=14% Similarity=0.072 Sum_probs=70.7
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHH---HHHHHC-CCeEEEEEECCCCHHHHH--------HCCCCCCC
Q 026887 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLC---RTAEEH-PEIVFLKVNFDENKPMCK--------SLNVKVLP 167 (231)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~-~~v~~~~Vd~d~~~~l~~--------~~~i~~~P 167 (231)
.+.+..+.++ +|+|+|+|+++||++|+.|.+... ++.+.+ .++.++++|.++++++.+ .|++.|+|
T Consensus 5 ~eal~~Ak~~--~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~P 82 (124)
T cd02955 5 EEAFEKARRE--DKPIFLSIGYSTCHWCHVMEHESFEDEEVAAILNENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWP 82 (124)
T ss_pred HHHHHHHHHc--CCeEEEEEccCCCHhHHHHHHHccCCHHHHHHHhCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCC
Confidence 4566666555 899999999999999999987542 566653 579999999999877754 36899999
Q ss_pred EEEEEECCCceEEEEecCc----cCHHHHHHHHHHh
Q 026887 168 YFHFYRGAHGQLESFSCSL----AKFQKIKEAIALH 199 (231)
Q Consensus 168 t~~~~~~g~~~~~~~~g~~----~~~~~l~~~l~~~ 199 (231)
|++|++..+..+....+.. .+...+.+++++.
T Consensus 83 t~vfl~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~ 118 (124)
T cd02955 83 LNVFLTPDLKPFFGGTYFPPEDRYGRPGFKTVLEKI 118 (124)
T ss_pred EEEEECCCCCEEeeeeecCCCCcCCCcCHHHHHHHH
Confidence 9999987665665544320 1223455555544
No 71
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=99.51 E-value=2.5e-13 Score=107.22 Aligned_cols=86 Identities=14% Similarity=0.203 Sum_probs=65.6
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC------------HHHH-HHC---CCCCCCEEEEEECC
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN------------KPMC-KSL---NVKVLPYFHFYRGA 175 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~------------~~l~-~~~---~i~~~Pt~~~~~~g 175 (231)
++..+|+|||+||++|+++.|.++++++++ ++.++.|+.|+. .+.. ..| ++.++||.++++..
T Consensus 50 ~~~~lvnFWAsWCppCr~e~P~L~~l~~~~-~~~Vi~Vs~d~~~~~~fp~~~~~~~~~~~~~~~~~~v~~iPTt~LID~~ 128 (153)
T TIGR02738 50 DDYALVFFYQSTCPYCHQFAPVLKRFSQQF-GLPVYAFSLDGQGLTGFPDPLPATPEVMQTFFPNPRPVVTPATFLVNVN 128 (153)
T ss_pred CCCEEEEEECCCChhHHHHHHHHHHHHHHc-CCcEEEEEeCCCcccccccccCCchHHHHHHhccCCCCCCCeEEEEeCC
Confidence 567799999999999999999999999998 566666676642 2333 345 88999999999875
Q ss_pred CceEE-EEecCccCHHHHHHHHHHh
Q 026887 176 HGQLE-SFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 176 ~~~~~-~~~g~~~~~~~l~~~l~~~ 199 (231)
++.+. ...| ..+.+++++.|++.
T Consensus 129 G~~i~~~~~G-~~s~~~l~~~I~~l 152 (153)
T TIGR02738 129 TRKAYPVLQG-AVDEAELANRMDEI 152 (153)
T ss_pred CCEEEEEeec-ccCHHHHHHHHHHh
Confidence 54544 3444 56778888888764
No 72
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=99.46 E-value=7.7e-13 Score=110.06 Aligned_cols=90 Identities=18% Similarity=0.200 Sum_probs=72.8
Q ss_pred HHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEEe
Q 026887 104 LEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFS 183 (231)
Q Consensus 104 ~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~ 183 (231)
.+.+....+..+++.||++||++|+.+.+.+++++.+++++.+.++|.+++++++++|+|.++||++++++|. . +.
T Consensus 125 ~~~l~~~~~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~~~i~~~~vD~~~~~~~~~~~~V~~vPtl~i~~~~~-~---~~ 200 (215)
T TIGR02187 125 VELLQSLDEPVRIEVFVTPTCPYCPYAVLMAHKFALANDKILGEMIEANENPDLAEKYGVMSVPKIVINKGVE-E---FV 200 (215)
T ss_pred HHHHHhcCCCcEEEEEECCCCCCcHHHHHHHHHHHHhcCceEEEEEeCCCCHHHHHHhCCccCCEEEEecCCE-E---EE
Confidence 3344444445566669999999999999999999999888999999999999999999999999999986643 2 55
Q ss_pred cCccCHHHHHHHHHH
Q 026887 184 CSLAKFQKIKEAIAL 198 (231)
Q Consensus 184 g~~~~~~~l~~~l~~ 198 (231)
| ....++|.++|+.
T Consensus 201 G-~~~~~~l~~~l~~ 214 (215)
T TIGR02187 201 G-AYPEEQFLEYILS 214 (215)
T ss_pred C-CCCHHHHHHHHHh
Confidence 5 3556788888764
No 73
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=99.45 E-value=5.9e-13 Score=92.88 Aligned_cols=73 Identities=22% Similarity=0.297 Sum_probs=57.8
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHH
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKE 194 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~ 194 (231)
.|+||++||++|+.+.|.+++++++++. +.+++|| ..+.+.+|++.++||+++ +|+ .+ +.|.....++|.+
T Consensus 2 ~i~~~a~~C~~C~~~~~~~~~~~~e~~~~~~~~~v~---~~~~a~~~~v~~vPti~i--~G~-~~--~~G~~~~~~~l~~ 73 (76)
T TIGR00412 2 KIQIYGTGCANCQMTEKNVKKAVEELGIDAEFEKVT---DMNEILEAGVTATPGVAV--DGE-LV--IMGKIPSKEEIKE 73 (76)
T ss_pred EEEEECCCCcCHHHHHHHHHHHHHHcCCCeEEEEeC---CHHHHHHcCCCcCCEEEE--CCE-EE--EEeccCCHHHHHH
Confidence 4889999999999999999999999875 8888877 344578899999999998 654 44 5554455567776
Q ss_pred HH
Q 026887 195 AI 196 (231)
Q Consensus 195 ~l 196 (231)
.+
T Consensus 74 ~l 75 (76)
T TIGR00412 74 IL 75 (76)
T ss_pred Hh
Confidence 65
No 74
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.45 E-value=7.1e-13 Score=103.65 Aligned_cols=77 Identities=16% Similarity=0.317 Sum_probs=60.5
Q ss_pred HHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHC---------CCeEEEEEECCCC-----------------------
Q 026887 107 LSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH---------PEIVFLKVNFDEN----------------------- 154 (231)
Q Consensus 107 l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~---------~~v~~~~Vd~d~~----------------------- 154 (231)
+.+.++++++|+|||+||++|+++.|.+.++.+++ .++.++.|+.|+.
T Consensus 20 ls~~kgk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~~~~p~~~~ 99 (146)
T cd03008 20 VARLENRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKWLFLPFEDE 99 (146)
T ss_pred HHHhCCCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCceeecccch
Confidence 34456899999999999999999999999876643 2588888888743
Q ss_pred --HHHHHHCCCCCCCEEEEEECCCceEEEEec
Q 026887 155 --KPMCKSLNVKVLPYFHFYRGAHGQLESFSC 184 (231)
Q Consensus 155 --~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g 184 (231)
..+.++|++.++||.++++.. |++....+
T Consensus 100 ~~~~l~~~y~v~~iPt~vlId~~-G~Vv~~~~ 130 (146)
T cd03008 100 FRRELEAQFSVEELPTVVVLKPD-GDVLAANA 130 (146)
T ss_pred HHHHHHHHcCCCCCCEEEEECCC-CcEEeeCh
Confidence 146778999999999999765 46665544
No 75
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=99.45 E-value=4e-13 Score=122.63 Aligned_cols=101 Identities=24% Similarity=0.432 Sum_probs=83.3
Q ss_pred eCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC----eEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q 026887 97 IHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE----IVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (231)
Q Consensus 97 i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~ 172 (231)
..+.++|.+.+.+ .++.++|+||++||++|+.+.|.++++++.+.+ +.|+++|++.+. +.. ++|.++||+++|
T Consensus 350 ~l~~~~f~~~v~~-~~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n~-~~~-~~i~~~Pt~~~~ 426 (462)
T TIGR01130 350 VLVGKNFDEIVLD-ETKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAND-VPP-FEVEGFPTIKFV 426 (462)
T ss_pred EeeCcCHHHHhcc-CCCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCCc-cCC-CCccccCEEEEE
Confidence 3457788888765 379999999999999999999999999998764 889999999864 333 999999999999
Q ss_pred ECCCc-eEEEEecCccCHHHHHHHHHHhhc
Q 026887 173 RGAHG-QLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 173 ~~g~~-~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
++|+. ....+.| ..+.+.|.++|+++..
T Consensus 427 ~~~~~~~~~~~~g-~~~~~~l~~~l~~~~~ 455 (462)
T TIGR01130 427 PAGKKSEPVPYDG-DRTLEDFSKFIAKHAT 455 (462)
T ss_pred eCCCCcCceEecC-cCCHHHHHHHHHhcCC
Confidence 98774 2355655 4667999999998864
No 76
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.43 E-value=1.9e-12 Score=105.28 Aligned_cols=89 Identities=17% Similarity=0.240 Sum_probs=68.4
Q ss_pred CCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCH-----------------------HHHHHCCCCCCC
Q 026887 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK-----------------------PMCKSLNVKVLP 167 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~-----------------------~l~~~~~i~~~P 167 (231)
++++++|+||++||++|+++.|.+.++.++ ++.++.|+.++.. .+...|++.++|
T Consensus 67 ~gk~vvv~FwatwC~~C~~e~p~l~~l~~~--~~~vi~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~gv~~~P 144 (185)
T PRK15412 67 QGKPVLLNVWATWCPTCRAEHQYLNQLSAQ--GIRVVGMNYKDDRQKAISWLKELGNPYALSLFDGDGMLGLDLGVYGAP 144 (185)
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHc--CCEEEEEECCCCHHHHHHHHHHcCCCCceEEEcCCccHHHhcCCCcCC
Confidence 489999999999999999999999999763 7888888875432 244578999999
Q ss_pred EEEEEECCCceEEEEecCccCHHHHHHHHHHhhcC
Q 026887 168 YFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTD 202 (231)
Q Consensus 168 t~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~~ 202 (231)
+.++++..+.....+.| ..+.+++++.|+.....
T Consensus 145 ~t~vid~~G~i~~~~~G-~~~~~~l~~~i~~~~~~ 178 (185)
T PRK15412 145 ETFLIDGNGIIRYRHAG-DLNPRVWESEIKPLWEK 178 (185)
T ss_pred eEEEECCCceEEEEEec-CCCHHHHHHHHHHHHHH
Confidence 88888654424455554 56778888888877643
No 77
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.43 E-value=1.9e-12 Score=119.67 Aligned_cols=88 Identities=16% Similarity=0.288 Sum_probs=70.5
Q ss_pred CCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEE----------------------------CCCCHHHHHH
Q 026887 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVN----------------------------FDENKPMCKS 160 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd----------------------------~d~~~~l~~~ 160 (231)
++++|||+|||+||++|+.+.|.++++.++++ ++.++.|. +|.+..+.+.
T Consensus 55 kGKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~~~~~~~~~~~~~y~~~pV~~D~~~~lak~ 134 (521)
T PRK14018 55 KDKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKKDGDFQKWYAGLDYPKLPVLTDNGGTLAQS 134 (521)
T ss_pred CCCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEecccccccccHHHHHHHHHhCCCcccceeccccHHHHHH
Confidence 48999999999999999999999999999876 56666553 3455678899
Q ss_pred CCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHHHh
Q 026887 161 LNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 161 ~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
|+|.++||+++++.++..+..+.| ..+.++|+++|+..
T Consensus 135 fgV~giPTt~IIDkdGkIV~~~~G-~~~~eeL~a~Ie~~ 172 (521)
T PRK14018 135 LNISVYPSWAIIGKDGDVQRIVKG-SISEAQALALIRNP 172 (521)
T ss_pred cCCCCcCeEEEEcCCCeEEEEEeC-CCCHHHHHHHHHHh
Confidence 999999999877554435566665 46679999999843
No 78
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.40 E-value=9.4e-13 Score=111.94 Aligned_cols=98 Identities=22% Similarity=0.471 Sum_probs=82.9
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHH----HCCC--eEEEEEECCCCHHHHHHCCCCCCCEEEEEE
Q 026887 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAE----EHPE--IVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (231)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~----~~~~--v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~ 173 (231)
.++++.++.. ..+|+|.|||+||+-.+.++|.+++.++ ++|+ +.+.+|||+++..++.+|.|..+||+-+|+
T Consensus 3 ~~N~~~il~s--~elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e~P~~kvvwg~VDcd~e~~ia~ky~I~KyPTlKvfr 80 (375)
T KOG0912|consen 3 SENIDSILDS--NELVFVNFYADWCRFSQMLKPIFEEAAAKFKQEFPEGKVVWGKVDCDKEDDIADKYHINKYPTLKVFR 80 (375)
T ss_pred cccHHHhhcc--ceEEeeeeehhhchHHHHHhHHHHHHHHHHHHhCCCcceEEEEcccchhhHHhhhhccccCceeeeee
Confidence 4567777766 7899999999999999999999997654 5663 999999999999999999999999999999
Q ss_pred CCCceEE-EEecCccCHHHHHHHHHHhhc
Q 026887 174 GAHGQLE-SFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 174 ~g~~~~~-~~~g~~~~~~~l~~~l~~~~~ 201 (231)
+|. ... .|.| ..+.+.|.++|++...
T Consensus 81 nG~-~~~rEYRg-~RsVeaL~efi~kq~s 107 (375)
T KOG0912|consen 81 NGE-MMKREYRG-QRSVEALIEFIEKQLS 107 (375)
T ss_pred ccc-hhhhhhcc-chhHHHHHHHHHHHhc
Confidence 986 443 4555 4678999999998754
No 79
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.40 E-value=3.5e-12 Score=102.55 Aligned_cols=88 Identities=19% Similarity=0.300 Sum_probs=67.7
Q ss_pred CCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECC-----------------------CCHHHHHHCCCCCCC
Q 026887 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD-----------------------ENKPMCKSLNVKVLP 167 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d-----------------------~~~~l~~~~~i~~~P 167 (231)
++++++|+||++||++|+.+.|.++++.++ ++.++.|+.+ .+..+.++|++.++|
T Consensus 62 ~gk~vll~F~a~wC~~C~~~~p~l~~l~~~--~~~vi~V~~~~~~~~~~~~~~~~~~~f~~v~~D~~~~~~~~~~v~~~P 139 (173)
T TIGR00385 62 QGKPVLLNVWASWCPPCRAEHPYLNELAKD--GLPIVGVDYKDQSQNALKFLKELGNPYQAILIDPNGKLGLDLGVYGAP 139 (173)
T ss_pred CCCEEEEEEECCcCHHHHHHHHHHHHHHHc--CCEEEEEECCCChHHHHHHHHHcCCCCceEEECCCCchHHhcCCeeCC
Confidence 479999999999999999999999998764 5777777653 223466789999999
Q ss_pred EEEEEECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 168 YFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 168 t~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
+.++++..+..+..+.| ..+.+++++.|+++.+
T Consensus 140 ~~~~id~~G~i~~~~~G-~~~~~~l~~~l~~~~~ 172 (173)
T TIGR00385 140 ETFLVDGNGVILYRHAG-PLNNEVWTEGFLPAME 172 (173)
T ss_pred eEEEEcCCceEEEEEec-cCCHHHHHHHHHHHhh
Confidence 88777544324555555 4677899999998764
No 80
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.39 E-value=3.2e-12 Score=92.26 Aligned_cols=65 Identities=22% Similarity=0.540 Sum_probs=55.0
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCC---CeEEEEEECCCC-------------------------HHHHHHCCC
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHP---EIVFLKVNFDEN-------------------------KPMCKSLNV 163 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~Vd~d~~-------------------------~~l~~~~~i 163 (231)
||+++|+||++||++|++..|.+.++.++++ ++.++.|+.|+. ..+.+.|+|
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 5899999999999999999999999999998 599999998754 237889999
Q ss_pred CCCCEEEEEECCC
Q 026887 164 KVLPYFHFYRGAH 176 (231)
Q Consensus 164 ~~~Pt~~~~~~g~ 176 (231)
.++|++++++.++
T Consensus 81 ~~iP~~~lld~~G 93 (95)
T PF13905_consen 81 NGIPTLVLLDPDG 93 (95)
T ss_dssp TSSSEEEEEETTS
T ss_pred CcCCEEEEECCCC
Confidence 9999999998754
No 81
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.39 E-value=2.6e-12 Score=98.30 Aligned_cols=72 Identities=19% Similarity=0.450 Sum_probs=57.4
Q ss_pred HhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC----CeEEEEEECCCC------------------------HHHHH
Q 026887 108 SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP----EIVFLKVNFDEN------------------------KPMCK 159 (231)
Q Consensus 108 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~Vd~d~~------------------------~~l~~ 159 (231)
.+.++++++|+||++||++|+.+.|.+.++.+++. ++.++.|++|.. ..+++
T Consensus 14 ~~~~gk~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (131)
T cd03009 14 SSLEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWLAVPFSDRERRSRLNR 93 (131)
T ss_pred HHhCCcEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCeeEcccCCHHHHHHHHH
Confidence 33458999999999999999999999998877653 577777777644 35678
Q ss_pred HCCCCCCCEEEEEECCCceEE
Q 026887 160 SLNVKVLPYFHFYRGAHGQLE 180 (231)
Q Consensus 160 ~~~i~~~Pt~~~~~~g~~~~~ 180 (231)
+|+|.++|++++++.++ ++.
T Consensus 94 ~~~v~~~P~~~lid~~G-~i~ 113 (131)
T cd03009 94 TFKIEGIPTLIILDADG-EVV 113 (131)
T ss_pred HcCCCCCCEEEEECCCC-CEE
Confidence 99999999999997544 443
No 82
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=99.38 E-value=1.9e-12 Score=87.61 Aligned_cols=57 Identities=19% Similarity=0.240 Sum_probs=53.3
Q ss_pred EEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEE
Q 026887 115 VIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (231)
Q Consensus 115 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~ 171 (231)
-++.|+++||++|+.+.+.++++++.++++.+..+|++++++++++|++.++||+++
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~i~~~~id~~~~~~l~~~~~i~~vPti~i 58 (67)
T cd02973 2 NIEVFVSPTCPYCPDAVQAANRIAALNPNISAEMIDAAEFPDLADEYGVMSVPAIVI 58 (67)
T ss_pred EEEEEECCCCCCcHHHHHHHHHHHHhCCceEEEEEEcccCHhHHHHcCCcccCEEEE
Confidence 367899999999999999999999888889999999999999999999999999866
No 83
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=99.38 E-value=1.2e-12 Score=97.21 Aligned_cols=85 Identities=18% Similarity=0.330 Sum_probs=61.4
Q ss_pred CCCeEEEEEEcCCChhhHhhhHHHHH---HHHHCC-CeEEEEEECCCC--------------------HHHHHHCCCCCC
Q 026887 111 GDRLVIVEFYGTWCASCRALFPKLCR---TAEEHP-EIVFLKVNFDEN--------------------KPMCKSLNVKVL 166 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~C~~~~p~l~~---l~~~~~-~v~~~~Vd~d~~--------------------~~l~~~~~i~~~ 166 (231)
+++++++.||++||++|+.+.+.+.+ +.+.+. ++.++.++++.. .++.++|+|.++
T Consensus 4 ~~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~v~gt 83 (112)
T PF13098_consen 4 NGKPIVVVFTDPWCPYCKKLEKELFPDNDVARYLKDDFQVIFVNIDDSRDESEAVLDFDGQKNVRLSNKELAQRYGVNGT 83 (112)
T ss_dssp TSSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEEHCECEEEECESHSHHHHHHHHHSHTCHSSCHHHHHHHHHHTT--SS
T ss_pred CCCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHhhcCeEEEEEecCCcccccccccccccchhhhHHHHHHHHHcCCCcc
Confidence 58999999999999999999999985 444443 488888888743 358899999999
Q ss_pred CEEEEEECCCceEEEEecCccCHHHHHHHH
Q 026887 167 PYFHFYRGAHGQLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 167 Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l 196 (231)
||++++++.+..+..+.| ..+.++|.++|
T Consensus 84 Pt~~~~d~~G~~v~~~~G-~~~~~~l~~~L 112 (112)
T PF13098_consen 84 PTIVFLDKDGKIVYRIPG-YLSPEELLKML 112 (112)
T ss_dssp SEEEECTTTSCEEEEEES-S--HHHHHHHH
T ss_pred CEEEEEcCCCCEEEEecC-CCCHHHHHhhC
Confidence 999999643336667776 46678887765
No 84
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.38 E-value=3e-12 Score=98.30 Aligned_cols=74 Identities=23% Similarity=0.386 Sum_probs=58.3
Q ss_pred HhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC----CeEEEEEECCCCH-------------------------HHH
Q 026887 108 SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP----EIVFLKVNFDENK-------------------------PMC 158 (231)
Q Consensus 108 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~----~v~~~~Vd~d~~~-------------------------~l~ 158 (231)
.+.++++++|+||++||++|+.+.|.++++.+++. ++.++.|+++... .+.
T Consensus 13 ~~~~Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~ 92 (132)
T cd02964 13 SALEGKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWLAVPFEDEELRELLE 92 (132)
T ss_pred HHhCCCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeEeeccCcHHHHHHHH
Confidence 44458999999999999999999999999887654 4778878776532 456
Q ss_pred HHCCCCCCCEEEEEECCCceEEEE
Q 026887 159 KSLNVKVLPYFHFYRGAHGQLESF 182 (231)
Q Consensus 159 ~~~~i~~~Pt~~~~~~g~~~~~~~ 182 (231)
+.|+|.++||+++++.++ ++...
T Consensus 93 ~~~~v~~iPt~~lid~~G-~iv~~ 115 (132)
T cd02964 93 KQFKVEGIPTLVVLKPDG-DVVTT 115 (132)
T ss_pred HHcCCCCCCEEEEECCCC-CEEch
Confidence 679999999999996543 55433
No 85
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.37 E-value=6e-12 Score=95.67 Aligned_cols=77 Identities=18% Similarity=0.337 Sum_probs=59.7
Q ss_pred HhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEEC-----------------------CCCHHHHHHCCCC
Q 026887 108 SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNF-----------------------DENKPMCKSLNVK 164 (231)
Q Consensus 108 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~-----------------------d~~~~l~~~~~i~ 164 (231)
.+.++++++|+||++||++|+.+.|.++++.+++ ++.++.|+. |.+..+++.|++.
T Consensus 21 ~~~~gk~vvv~F~a~~C~~C~~~~~~l~~l~~~~-~~~vv~v~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~v~ 99 (127)
T cd03010 21 ADLKGKPYLLNVWASWCAPCREEHPVLMALARQG-RVPIYGINYKDNPENALAWLARHGNPYAAVGFDPDGRVGIDLGVY 99 (127)
T ss_pred HHcCCCEEEEEEEcCcCHHHHHHHHHHHHHHHhc-CcEEEEEECCCCHHHHHHHHHhcCCCCceEEECCcchHHHhcCCC
Confidence 3445899999999999999999999999998887 477776664 3445678899999
Q ss_pred CCCEEEEEECCCceEEEEecC
Q 026887 165 VLPYFHFYRGAHGQLESFSCS 185 (231)
Q Consensus 165 ~~Pt~~~~~~g~~~~~~~~g~ 185 (231)
++|+.++++..+..+..+.|.
T Consensus 100 ~~P~~~~ld~~G~v~~~~~G~ 120 (127)
T cd03010 100 GVPETFLIDGDGIIRYKHVGP 120 (127)
T ss_pred CCCeEEEECCCceEEEEEecc
Confidence 999877775443355666663
No 86
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.34 E-value=4.9e-12 Score=113.86 Aligned_cols=91 Identities=22% Similarity=0.449 Sum_probs=81.0
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHH
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQ 190 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~ 190 (231)
+++++|+||++||++|+.+.|.+.+++..+.+ +.+..||++++.++|++|+|.++||+.+|.+| .....+.+ ..+.+
T Consensus 47 ~~~~~v~fyapwc~~c~~l~~~~~~~~~~l~~~~~~~~vd~~~~~~~~~~y~i~gfPtl~~f~~~-~~~~~~~~-~~~~~ 124 (383)
T KOG0191|consen 47 DSPWLVEFYAPWCGHCKKLAPTYKKLAKALKGKVKIGAVDCDEHKDLCEKYGIQGFPTLKVFRPG-KKPIDYSG-PRNAE 124 (383)
T ss_pred CCceEEEEECCCCcchhhhchHHHHHHHHhcCceEEEEeCchhhHHHHHhcCCccCcEEEEEcCC-CceeeccC-cccHH
Confidence 78999999999999999999999999999887 89999999999999999999999999999997 46666666 46778
Q ss_pred HHHHHHHHhhcCCC
Q 026887 191 KIKEAIALHNTDRC 204 (231)
Q Consensus 191 ~l~~~l~~~~~~~~ 204 (231)
.+.+++.+.+....
T Consensus 125 ~~~~~~~~~~~~~~ 138 (383)
T KOG0191|consen 125 SLAEFLIKELEPSV 138 (383)
T ss_pred HHHHHHHHhhcccc
Confidence 89998888766543
No 87
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.34 E-value=1.9e-11 Score=97.57 Aligned_cols=89 Identities=19% Similarity=0.360 Sum_probs=72.2
Q ss_pred cCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC--eEEEEEECCC----------------------CHHHHHHCCCCC
Q 026887 110 AGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE--IVFLKVNFDE----------------------NKPMCKSLNVKV 165 (231)
Q Consensus 110 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--v~~~~Vd~d~----------------------~~~l~~~~~i~~ 165 (231)
.++++++|+||++||++|+...+.+.++.+++++ +.++.|+++. +.++++.|++.+
T Consensus 59 ~~~k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~v~~ 138 (173)
T PRK03147 59 LKGKGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETELAVKNFVNRYGLTFPVAIDKGRQVIDAYGVGP 138 (173)
T ss_pred cCCCEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCHHHHHHHHHHhCCCceEEECCcchHHHHcCCCC
Confidence 3478999999999999999999999999999864 8888888753 356789999999
Q ss_pred CCEEEEEECCCceEEEEecCccCHHHHHHHHHHh
Q 026887 166 LPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 166 ~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
+|+++++++++..+..+.| ..+.+++.+.+++.
T Consensus 139 ~P~~~lid~~g~i~~~~~g-~~~~~~l~~~l~~~ 171 (173)
T PRK03147 139 LPTTFLIDKDGKVVKVITG-EMTEEQLEEYLEKI 171 (173)
T ss_pred cCeEEEECCCCcEEEEEeC-CCCHHHHHHHHHHh
Confidence 9999999765534444444 46678899988864
No 88
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=99.34 E-value=1.8e-11 Score=88.02 Aligned_cols=70 Identities=11% Similarity=0.180 Sum_probs=61.8
Q ss_pred HHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCC
Q 026887 105 EALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAH 176 (231)
Q Consensus 105 ~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~ 176 (231)
+.+++..++.-+..|+++||++|....+.+++++++++++.+..+|.++.++++++|+|.++||+++ +|+
T Consensus 5 ~~~~~l~~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~~i~~~~vd~~~~~e~a~~~~V~~vPt~vi--dG~ 74 (89)
T cd03026 5 EQIRRLNGPINFETYVSLSCHNCPDVVQALNLMAVLNPNIEHEMIDGALFQDEVEERGIMSVPAIFL--NGE 74 (89)
T ss_pred HHHHhcCCCEEEEEEECCCCCCcHHHHHHHHHHHHHCCCceEEEEEhHhCHHHHHHcCCccCCEEEE--CCE
Confidence 3444455677889999999999999999999999999999999999999999999999999999965 654
No 89
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.32 E-value=1.7e-11 Score=89.78 Aligned_cols=73 Identities=26% Similarity=0.502 Sum_probs=62.8
Q ss_pred CCCeEEEEEEcCCChhhHhhhHHHHHHHHHC--CCeEEEEEECCCC-----------------------HHHHHHCCCCC
Q 026887 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEH--PEIVFLKVNFDEN-----------------------KPMCKSLNVKV 165 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~--~~v~~~~Vd~d~~-----------------------~~l~~~~~i~~ 165 (231)
.+++++|+||++||++|+...+.+.++.+++ +++.++.|+++.. ..+.+.|++.+
T Consensus 18 ~~k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (116)
T cd02966 18 KGKVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYGITFPVLLDPDGELAKAYGVRG 97 (116)
T ss_pred CCCEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcCCCcceEEcCcchHHHhcCcCc
Confidence 4789999999999999999999999999998 5799999999985 77899999999
Q ss_pred CCEEEEEECCCceEEEEe
Q 026887 166 LPYFHFYRGAHGQLESFS 183 (231)
Q Consensus 166 ~Pt~~~~~~g~~~~~~~~ 183 (231)
+|++++++..+..+..+.
T Consensus 98 ~P~~~l~d~~g~v~~~~~ 115 (116)
T cd02966 98 LPTTFLIDRDGRIRARHV 115 (116)
T ss_pred cceEEEECCCCcEEEEec
Confidence 999999975543444443
No 90
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.27 E-value=3.1e-11 Score=120.75 Aligned_cols=91 Identities=15% Similarity=0.289 Sum_probs=72.5
Q ss_pred cCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC--eEEEEEEC---------------------------CCCHHHHHH
Q 026887 110 AGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE--IVFLKVNF---------------------------DENKPMCKS 160 (231)
Q Consensus 110 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~--v~~~~Vd~---------------------------d~~~~l~~~ 160 (231)
.++|++||+|||+||++|+.+.|.++++.++|++ +.++.|.. |.+..+.++
T Consensus 418 lkGK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~D~~~~~~~~~~~~~~~~i~~pvv~D~~~~~~~~ 497 (1057)
T PLN02919 418 LKGKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKFDNEKDLEAIRNAVLRYNISHPVVNDGDMYLWRE 497 (1057)
T ss_pred cCCCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccccccccHHHHHHHHHHhCCCccEEECCchHHHHh
Confidence 3589999999999999999999999999999974 77887742 223457789
Q ss_pred CCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 161 LNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 161 ~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
|+|.++|++++|+..+..+.++.| ....++|.+.|++...
T Consensus 498 ~~V~~iPt~ilid~~G~iv~~~~G-~~~~~~l~~~l~~~l~ 537 (1057)
T PLN02919 498 LGVSSWPTFAVVSPNGKLIAQLSG-EGHRKDLDDLVEAALQ 537 (1057)
T ss_pred cCCCccceEEEECCCCeEEEEEec-ccCHHHHHHHHHHHHH
Confidence 999999999999644436667666 4556888888887654
No 91
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.27 E-value=7.4e-11 Score=95.13 Aligned_cols=85 Identities=12% Similarity=0.076 Sum_probs=66.7
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC-------------HHHHHHCCC--CCCCEEEEEECCCceEE
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN-------------KPMCKSLNV--KVLPYFHFYRGAHGQLE 180 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~-------------~~l~~~~~i--~~~Pt~~~~~~g~~~~~ 180 (231)
+|.||++||++|+++.|.+.++++++ ++.++.|++|+. ..+.+.|++ .++||.++++..+....
T Consensus 73 lV~FwaswCp~C~~e~P~L~~l~~~~-g~~Vi~Vs~D~~~~~~fPv~~dd~~~~~~~~~g~~~~~iPttfLId~~G~i~~ 151 (181)
T PRK13728 73 VVLFMQGHCPYCHQFDPVLKQLAQQY-GFSVFPYTLDGQGDTAFPEALPAPPDVMQTFFPNIPVATPTTFLVNVNTLEAL 151 (181)
T ss_pred EEEEECCCCHhHHHHHHHHHHHHHHc-CCEEEEEEeCCCCCCCCceEecCchhHHHHHhCCCCCCCCeEEEEeCCCcEEE
Confidence 77799999999999999999999998 577777777633 236678985 69999999976553433
Q ss_pred -EEecCccCHHHHHHHHHHhhcC
Q 026887 181 -SFSCSLAKFQKIKEAIALHNTD 202 (231)
Q Consensus 181 -~~~g~~~~~~~l~~~l~~~~~~ 202 (231)
.+.| ..+.++|++.|++..+.
T Consensus 152 ~~~~G-~~~~~~L~~~I~~ll~~ 173 (181)
T PRK13728 152 PLLQG-ATDAAGFMARMDTVLQM 173 (181)
T ss_pred EEEEC-CCCHHHHHHHHHHHHhh
Confidence 4555 57778999999988764
No 92
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.27 E-value=4.8e-11 Score=89.96 Aligned_cols=82 Identities=20% Similarity=0.331 Sum_probs=62.5
Q ss_pred CCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEEC---------------------CCCHHHHHHCCCCCCCEE
Q 026887 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNF---------------------DENKPMCKSLNVKVLPYF 169 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~---------------------d~~~~l~~~~~i~~~Pt~ 169 (231)
++++++|+||++||++|+.+.|.+.++++++. +..+.+|- +.+.+++++|+|.++|++
T Consensus 19 ~~k~~vl~F~~~~C~~C~~~~~~l~~~~~~~~-~i~i~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~i~~~P~~ 97 (123)
T cd03011 19 SGKPVLVYFWATWCPVCRFTSPTVNQLAADYP-VVSVALRSGDDGAVARFMQKKGYGFPVINDPDGVISARWGVSVTPAI 97 (123)
T ss_pred CCCEEEEEEECCcChhhhhhChHHHHHHhhCC-EEEEEccCCCHHHHHHHHHHcCCCccEEECCCcHHHHhCCCCcccEE
Confidence 46899999999999999999999999988743 22222221 345679999999999999
Q ss_pred EEEECCCceEEEEecCccCHHHHHHH
Q 026887 170 HFYRGAHGQLESFSCSLAKFQKIKEA 195 (231)
Q Consensus 170 ~~~~~g~~~~~~~~g~~~~~~~l~~~ 195 (231)
+++++++ ....+.| ..+.+.|.+.
T Consensus 98 ~vid~~g-i~~~~~g-~~~~~~~~~~ 121 (123)
T cd03011 98 VIVDPGG-IVFVTTG-VTSEWGLRLR 121 (123)
T ss_pred EEEcCCC-eEEEEec-cCCHHHHHhh
Confidence 9998775 5566655 4566777653
No 93
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.25 E-value=6.9e-11 Score=89.92 Aligned_cols=75 Identities=12% Similarity=0.238 Sum_probs=59.5
Q ss_pred cCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECC---------------------------CCHHHHHH
Q 026887 110 AGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFD---------------------------ENKPMCKS 160 (231)
Q Consensus 110 ~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d---------------------------~~~~l~~~ 160 (231)
.++++++|+||++||++|+...|.++++.++++ ++.++.|+.+ ....+.+.
T Consensus 21 ~~gk~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p~~~D~~~~~~~~ 100 (126)
T cd03012 21 LRGKVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYPVANDNDYATWRA 100 (126)
T ss_pred hCCCEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCCEEECCchHHHHH
Confidence 347999999999999999999999999999987 4888887642 12346778
Q ss_pred CCCCCCCEEEEEECCCceEEEEec
Q 026887 161 LNVKVLPYFHFYRGAHGQLESFSC 184 (231)
Q Consensus 161 ~~i~~~Pt~~~~~~g~~~~~~~~g 184 (231)
|++.++|+.++++..+..+..+.|
T Consensus 101 ~~v~~~P~~~vid~~G~v~~~~~G 124 (126)
T cd03012 101 YGNQYWPALYLIDPTGNVRHVHFG 124 (126)
T ss_pred hCCCcCCeEEEECCCCcEEEEEec
Confidence 999999999999655435555544
No 94
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=99.25 E-value=4.1e-11 Score=91.67 Aligned_cols=82 Identities=11% Similarity=0.148 Sum_probs=55.9
Q ss_pred HHHHHHHh--cCCCeEEEEEEcCCChhhHhhhHHHH---HHHHHC-CCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECC
Q 026887 102 EFLEALSQ--AGDRLVIVEFYGTWCASCRALFPKLC---RTAEEH-PEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGA 175 (231)
Q Consensus 102 ~~~~~l~~--~~~k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~-~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g 175 (231)
+|++.++. .++|+++|+|+++||++|+.|...+. ++.+.. .++..+.++.+....-....+ .++||++|++..
T Consensus 11 ~~eeal~~Ak~~~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~~~g-~~vPtivFld~~ 89 (130)
T cd02960 11 TYEEGLYKAKKSNKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLSPDG-QYVPRIMFVDPS 89 (130)
T ss_pred hHHHHHHHHHHCCCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcCccC-cccCeEEEECCC
Confidence 45554432 24899999999999999999998764 455544 357777777653211111233 689999999876
Q ss_pred CceEEEEec
Q 026887 176 HGQLESFSC 184 (231)
Q Consensus 176 ~~~~~~~~g 184 (231)
+..+.++.|
T Consensus 90 g~vi~~i~G 98 (130)
T cd02960 90 LTVRADITG 98 (130)
T ss_pred CCCcccccc
Confidence 656666666
No 95
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=99.21 E-value=2.6e-10 Score=85.37 Aligned_cols=90 Identities=12% Similarity=0.109 Sum_probs=71.5
Q ss_pred CCCeEEEEEEcCCChhhHhhhHHH-H--HHHHHCC-CeEEEEEECCC--CHHHHHHCCCCCCCEEEEEEC-CCceEEEEe
Q 026887 111 GDRLVIVEFYGTWCASCRALFPKL-C--RTAEEHP-EIVFLKVNFDE--NKPMCKSLNVKVLPYFHFYRG-AHGQLESFS 183 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~C~~~~p~l-~--~l~~~~~-~v~~~~Vd~d~--~~~l~~~~~i~~~Pt~~~~~~-g~~~~~~~~ 183 (231)
++|+++|+|+++||++|+.+...+ . ++.+.+. ++.++++|++. ..+++..|++.++|++++++. .+..+.++.
T Consensus 16 ~~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~~~~v~~~~d~~~~e~~~~~~~~~~~~~P~~~~i~~~~g~~l~~~~ 95 (114)
T cd02958 16 EKKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIRENFIFWQCDIDSSEGQRFLQSYKVDKYPHIAIIDPRTGEVLKVWS 95 (114)
T ss_pred hCceEEEEEecCCcchHHHHHHHHcCCHHHHHHHHhCEEEEEecCCCccHHHHHHHhCccCCCeEEEEeCccCcEeEEEc
Confidence 389999999999999999998753 2 4555543 58889999874 467899999999999999987 444667666
Q ss_pred cCccCHHHHHHHHHHhhc
Q 026887 184 CSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 184 g~~~~~~~l~~~l~~~~~ 201 (231)
| ..+++++.+.|++...
T Consensus 96 G-~~~~~~f~~~L~~~~~ 112 (114)
T cd02958 96 G-NITPEDLLSQLIEFLE 112 (114)
T ss_pred C-CCCHHHHHHHHHHHHh
Confidence 6 4677999999887653
No 96
>PRK11509 hydrogenase-1 operon protein HyaE; Provisional
Probab=99.20 E-value=3.5e-10 Score=86.64 Aligned_cols=97 Identities=8% Similarity=0.036 Sum_probs=79.7
Q ss_pred HHHHHHHHhcCCCeEEEEEEcC--CChhhHhhhHHHHHHHHHCC-C-eEEEEEECCCCHHHHHHCCCCCCCEEEEEECCC
Q 026887 101 QEFLEALSQAGDRLVIVEFYGT--WCASCRALFPKLCRTAEEHP-E-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAH 176 (231)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~--wC~~C~~~~p~l~~l~~~~~-~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~ 176 (231)
++++..+.. +...+|.|-.+ -++.+....-.+++++++|+ + +++++||+|++++++.+|||.++||++||++|+
T Consensus 25 ~~~~~~~~~--~~~~vl~~~gdp~r~~E~~D~avvleELa~e~~~~~v~~akVDiD~~~~LA~~fgV~siPTLl~FkdGk 102 (132)
T PRK11509 25 SRLDDWLTQ--APDGVVLLSSDPKRTPEVSDNPVMIGELLREFPDYTWQVAIADLEQSEAIGDRFGVFRFPATLVFTGGN 102 (132)
T ss_pred ccHHHHHhC--CCcEEEEeCCCCCcCCccccHHHHHHHHHHHhcCCceEEEEEECCCCHHHHHHcCCccCCEEEEEECCE
Confidence 455555655 44566656554 47788888889999999998 3 899999999999999999999999999999987
Q ss_pred ceEEEEecCccCHHHHHHHHHHhhc
Q 026887 177 GQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 177 ~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
.+..+.|. .+.+++.++|++++.
T Consensus 103 -~v~~i~G~-~~k~~l~~~I~~~L~ 125 (132)
T PRK11509 103 -YRGVLNGI-HPWAELINLMRGLVE 125 (132)
T ss_pred -EEEEEeCc-CCHHHHHHHHHHHhc
Confidence 88888874 566999999998875
No 97
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.20 E-value=1.5e-10 Score=90.02 Aligned_cols=87 Identities=20% Similarity=0.355 Sum_probs=65.3
Q ss_pred HhcCCCeEEEEEEcC-CChhhHhhhHHHHHHHHHCC--CeEEEEEECCCC---------------------HHHHHHCCC
Q 026887 108 SQAGDRLVIVEFYGT-WCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN---------------------KPMCKSLNV 163 (231)
Q Consensus 108 ~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~---------------------~~l~~~~~i 163 (231)
.+.++|+++|+||++ ||++|+...|.+.++.++++ ++.++.|..+.. ..+.++|++
T Consensus 24 ~~~~gk~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 103 (146)
T PF08534_consen 24 SDFKGKPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPVREFLKKYGINFPVLSDPDGALAKALGV 103 (146)
T ss_dssp GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHHHHHHHHTTTTSEEEEETTSHHHHHTTC
T ss_pred HHhCCCeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHHHHHHHhhCCCceEEechHHHHHHHhCC
Confidence 345689999999999 99999999999999988754 588877776433 458889998
Q ss_pred C---------CCCEEEEEECCCceEEEEecCccC-HHHHHH
Q 026887 164 K---------VLPYFHFYRGAHGQLESFSCSLAK-FQKIKE 194 (231)
Q Consensus 164 ~---------~~Pt~~~~~~g~~~~~~~~g~~~~-~~~l~~ 194 (231)
. ++|++++++..+..+....|...+ ..++++
T Consensus 104 ~~~~~~~~~~~~P~~~lId~~G~V~~~~~g~~~~~~~~~~~ 144 (146)
T PF08534_consen 104 TIMEDPGNGFGIPTTFLIDKDGKVVYRHVGPDPDEESDLEA 144 (146)
T ss_dssp EEECCTTTTSSSSEEEEEETTSBEEEEEESSBTTSHHSHHH
T ss_pred ccccccccCCeecEEEEEECCCEEEEEEeCCCCCCCCChhh
Confidence 8 999999998766455555553332 334443
No 98
>KOG1672 consensus ATP binding protein [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=99.17 E-value=2.4e-10 Score=91.64 Aligned_cols=112 Identities=21% Similarity=0.389 Sum_probs=97.7
Q ss_pred cccccCCCCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCC
Q 026887 85 KWWEKNAPNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVK 164 (231)
Q Consensus 85 ~w~~~~~~~~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~ 164 (231)
.|-+..+..+.+|.++.+|-+.... ..-||++||-+.-..|+.|...++.+++.+.+.+|++||++..|-++.+++|.
T Consensus 59 ~~~~~GhG~y~ev~~Ekdf~~~~~k--S~kVVcHFY~~~f~RCKimDkhLe~LAk~h~eTrFikvnae~~PFlv~kL~Ik 136 (211)
T KOG1672|consen 59 EWLSKGHGEYEEVASEKDFFEEVKK--SEKVVCHFYRPEFFRCKIMDKHLEILAKRHVETRFIKVNAEKAPFLVTKLNIK 136 (211)
T ss_pred HHHHcCCceEEEeccHHHHHHHhhc--CceEEEEEEcCCCcceehHHHHHHHHHHhcccceEEEEecccCceeeeeeeee
Confidence 4777788999999999999998876 57799999999999999999999999999999999999999999999999999
Q ss_pred CCCEEEEEECCCceEEEEec-------CccCHHHHHHHHHHh
Q 026887 165 VLPYFHFYRGAHGQLESFSC-------SLAKFQKIKEAIALH 199 (231)
Q Consensus 165 ~~Pt~~~~~~g~~~~~~~~g-------~~~~~~~l~~~l~~~ 199 (231)
.+|++.+|++|. .+.++.| ...+.+.|+..|.+.
T Consensus 137 VLP~v~l~k~g~-~~D~iVGF~dLGnkDdF~te~LE~rL~~S 177 (211)
T KOG1672|consen 137 VLPTVALFKNGK-TVDYVVGFTDLGNKDDFTTETLENRLAKS 177 (211)
T ss_pred EeeeEEEEEcCE-EEEEEeeHhhcCCCCcCcHHHHHHHHhhc
Confidence 999999999987 7777777 123445666666544
No 99
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.17 E-value=1.2e-10 Score=104.84 Aligned_cols=105 Identities=19% Similarity=0.339 Sum_probs=87.3
Q ss_pred EeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC---CeEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q 026887 96 DIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP---EIVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (231)
Q Consensus 96 ~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~ 172 (231)
.-.+.++|...+.+. +..++|.||+|||++|+.+.|.+++++..+. ++.+..+|++.+..++.+++|.++||+.+|
T Consensus 147 ~~l~~~~~~~~~~~~-~~~~lv~f~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~Pt~~~f 225 (383)
T KOG0191|consen 147 FELTKDNFDETVKDS-DADWLVEFYAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYPTLKLF 225 (383)
T ss_pred EEccccchhhhhhcc-CcceEEEEeccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCceEEEe
Confidence 334456777666553 7889999999999999999999999998774 499999999999999999999999999999
Q ss_pred ECCCceEEEEecCccCHHHHHHHHHHhhcC
Q 026887 173 RGAHGQLESFSCSLAKFQKIKEAIALHNTD 202 (231)
Q Consensus 173 ~~g~~~~~~~~g~~~~~~~l~~~l~~~~~~ 202 (231)
.+|.. ...+..+..+.+.|.+++++....
T Consensus 226 ~~~~~-~~~~~~~~R~~~~i~~~v~~~~~~ 254 (383)
T KOG0191|consen 226 PPGEE-DIYYYSGLRDSDSIVSFVEKKERR 254 (383)
T ss_pred cCCCc-ccccccccccHHHHHHHHHhhcCC
Confidence 98874 444555567889999999987654
No 100
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.16 E-value=2.1e-10 Score=85.28 Aligned_cols=64 Identities=20% Similarity=0.336 Sum_probs=48.2
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCC-CeEEEEEECC---CC-----------------HHHHHHCCCCCCCEEE
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFD---EN-----------------KPMCKSLNVKVLPYFH 170 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~Vd~d---~~-----------------~~l~~~~~i~~~Pt~~ 170 (231)
+++++|+||++||++|+.+.|.++++.+++. ++.++.+.-+ +. .++.++|++.++|+.+
T Consensus 21 gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~~~~~vi~v~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~P~~~ 100 (114)
T cd02967 21 GRPTLLFFLSPTCPVCKKLLPVIRSIARAEADWLDVVLASDGEKAEHQRFLKKHGLEAFPYVLSAELGMAYQVSKLPYAV 100 (114)
T ss_pred CCeEEEEEECCCCcchHhHhHHHHHHHHHhcCCcEEEEEeCCCHHHHHHHHHHhCCCCCcEEecHHHHhhcCCCCcCeEE
Confidence 7999999999999999999999999988875 4666655211 11 2355677777888887
Q ss_pred EEECC
Q 026887 171 FYRGA 175 (231)
Q Consensus 171 ~~~~g 175 (231)
+++..
T Consensus 101 vid~~ 105 (114)
T cd02967 101 LLDEA 105 (114)
T ss_pred EECCC
Confidence 77643
No 101
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=99.15 E-value=1.8e-11 Score=111.80 Aligned_cols=80 Identities=25% Similarity=0.544 Sum_probs=69.2
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC----eEEEEEECC--CCHHHHHHCCCCCCCE
Q 026887 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE----IVFLKVNFD--ENKPMCKSLNVKVLPY 168 (231)
Q Consensus 95 ~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~----v~~~~Vd~d--~~~~l~~~~~i~~~Pt 168 (231)
+...+.++|..++... .+-.+|.||++|||+|+++.|.++++++...+ +.+..|||- +|..+|++|+|.++|+
T Consensus 41 ii~Ld~~tf~~~v~~~-~~~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRef~V~~~Pt 119 (606)
T KOG1731|consen 41 IIELDVDTFNAAVFGS-RKAKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCREFSVSGYPT 119 (606)
T ss_pred eEEeehhhhHHHhccc-chhHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhhcCCCCCce
Confidence 3345588999999774 46899999999999999999999999987653 789999995 5789999999999999
Q ss_pred EEEEECC
Q 026887 169 FHFYRGA 175 (231)
Q Consensus 169 ~~~~~~g 175 (231)
+.+|..+
T Consensus 120 lryf~~~ 126 (606)
T KOG1731|consen 120 LRYFPPD 126 (606)
T ss_pred eeecCCc
Confidence 9999875
No 102
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=99.15 E-value=1.7e-10 Score=81.44 Aligned_cols=62 Identities=26% Similarity=0.602 Sum_probs=48.4
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHH---HHHH-HCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEEC
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLC---RTAE-EHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRG 174 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~---~l~~-~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~ 174 (231)
+|+++|+|+++||++|+.+...+. ++.+ -.+++.+++||.++...... +...++|+++|++.
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~~~~fv~v~vd~~~~~~~~~-~~~~~~P~~~~ldp 82 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEALNKNFVLVKVDVDDEDPNAQ-FDRQGYPTFFFLDP 82 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHHHHCSEEEEEETTTHHHHHH-HHHCSSSEEEEEET
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHHHCCEEEEEEEcCCCChhHH-hCCccCCEEEEeCC
Confidence 899999999999999999998773 5555 23579999999987654332 22277999999863
No 103
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.11 E-value=5.5e-10 Score=91.94 Aligned_cols=95 Identities=9% Similarity=0.133 Sum_probs=66.9
Q ss_pred HhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC-------C----HHHHHHCCC-----------
Q 026887 108 SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-------N----KPMCKSLNV----------- 163 (231)
Q Consensus 108 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~-------~----~~l~~~~~i----------- 163 (231)
.+.+++++||.|||+||++|+...|.+.++.+++. ++.++.|++++ . ..+++++++
T Consensus 35 ~~~kGkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~e~d~~e~~~~f~~~~~~~fpvl~d~~v~ 114 (199)
T PTZ00056 35 SSLKNKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQEFPNTKDIRKFNDKNKIKYNFFEPIEVN 114 (199)
T ss_pred HHhCCCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCCCCCCHHHHHHHHHHcCCCceeeeeeecc
Confidence 34458999999999999999999999999999986 48999998741 1 233444443
Q ss_pred -------------------------CCCC---EEEEEECCCceEEEEecCccCHHHHHHHHHHhhcCC
Q 026887 164 -------------------------KVLP---YFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDR 203 (231)
Q Consensus 164 -------------------------~~~P---t~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~~~ 203 (231)
..+| +.++++.. |++.....+..+.++|++.|++.++..
T Consensus 115 g~~~~~l~~~l~~~~~~~~d~~~~~~~i~~~~~tflID~~-G~iv~~~~g~~~~~~l~~~I~~ll~~~ 181 (199)
T PTZ00056 115 GENTHELFKFLKANCDSMHDENGTLKAIGWNFGKFLVNKS-GNVVAYFSPRTEPLELEKKIAELLGVK 181 (199)
T ss_pred CCccCHHHHHHHHhCcccccccccCCccCCCCEEEEECCC-CcEEEEeCCCCCHHHHHHHHHHHHHHH
Confidence 1122 45555443 455444455567788999999887654
No 104
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.09 E-value=1.3e-09 Score=88.92 Aligned_cols=87 Identities=15% Similarity=0.260 Sum_probs=63.7
Q ss_pred CCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECC--------------------CCHHHHHHCCCCCCCEEE
Q 026887 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD--------------------ENKPMCKSLNVKVLPYFH 170 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d--------------------~~~~l~~~~~i~~~Pt~~ 170 (231)
++++++|+||++||++|+.+.|.+.++.+++ ++.++.|..+ ...++.+.|++.++|+.+
T Consensus 73 ~gk~vvl~F~atwCp~C~~~lp~l~~~~~~~-~~~vv~Is~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~y~v~~~P~~~ 151 (189)
T TIGR02661 73 PGRPTLLMFTAPSCPVCDKLFPIIKSIARAE-ETDVVMISDGTPAEHRRFLKDHELGGERYVVSAEIGMAFQVGKIPYGV 151 (189)
T ss_pred CCCEEEEEEECCCChhHHHHHHHHHHHHHhc-CCcEEEEeCCCHHHHHHHHHhcCCCcceeechhHHHHhccCCccceEE
Confidence 4799999999999999999999999988765 3444444321 124677899999999988
Q ss_pred EEECCCceEEEEecCccCHHHHHHHHHHhh
Q 026887 171 FYRGAHGQLESFSCSLAKFQKIKEAIALHN 200 (231)
Q Consensus 171 ~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~ 200 (231)
+++.+ |++... +.....+.+++.++...
T Consensus 152 lID~~-G~I~~~-g~~~~~~~le~ll~~l~ 179 (189)
T TIGR02661 152 LLDQD-GKIRAK-GLTNTREHLESLLEADR 179 (189)
T ss_pred EECCC-CeEEEc-cCCCCHHHHHHHHHHHH
Confidence 88654 355543 43455678888887653
No 105
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.08 E-value=1.3e-09 Score=91.70 Aligned_cols=94 Identities=12% Similarity=0.115 Sum_probs=68.4
Q ss_pred HHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC-------C----HHHH-HHCC----------
Q 026887 107 LSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-------N----KPMC-KSLN---------- 162 (231)
Q Consensus 107 l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~-------~----~~l~-~~~~---------- 162 (231)
+.+.+++++||+||++||++|+...|.+.++.++++ ++.++.|++++ . .+.+ ++++
T Consensus 94 Lsd~kGK~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~~s~~ei~~f~~~~~g~~fPvl~~~D 173 (236)
T PLN02399 94 LSKFKGKVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEPGSNPEIKQFACTRFKAEFPIFDKVD 173 (236)
T ss_pred HHHhCCCeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCCCCHHHHHHHHHHhcCCCCccccccC
Confidence 344458999999999999999999999999999986 48999998741 1 1222 2221
Q ss_pred ------------------------CCCCCEEEEEECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 163 ------------------------VKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 163 ------------------------i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
+...|+.++++.++..+.++.| ..+.++|++.|++.++
T Consensus 174 ~~G~~~~~~y~~l~~~~~~~~g~~i~~~PttfLIDk~GkVv~~~~G-~~~~~~le~~I~~lL~ 235 (236)
T PLN02399 174 VNGPSTAPVYQFLKSNAGGFLGDLIKWNFEKFLVDKNGKVVERYPP-TTSPFQIEKDIQKLLA 235 (236)
T ss_pred CCcchhhHHHHHHHHhcCCccCCccccCceEEEECCCCcEEEEECC-CCCHHHHHHHHHHHhc
Confidence 1235888888665545566655 4677899999998764
No 106
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.08 E-value=1.3e-09 Score=88.24 Aligned_cols=88 Identities=8% Similarity=0.038 Sum_probs=61.7
Q ss_pred HhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEE------EEEECCC----------------------------
Q 026887 108 SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVF------LKVNFDE---------------------------- 153 (231)
Q Consensus 108 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~------~~Vd~d~---------------------------- 153 (231)
++..+|..+|+|||.||++|+...|.++++.++ ++.+ +.||.++
T Consensus 55 ~~l~GKV~lvn~~Aswc~~c~~e~P~l~~l~~~--~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD 132 (184)
T TIGR01626 55 AELAGKVRVVHHIAGRTSAKEXNASLIDAIKAA--KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLD 132 (184)
T ss_pred HHcCCCEEEEEEEecCCChhhccchHHHHHHHc--CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEEC
Confidence 344599999999999999999999999999664 2333 5555543
Q ss_pred -CHHHHHHCCCCCCCEE-EEEECCCceEEEEecCccCHHHHHHHHHH
Q 026887 154 -NKPMCKSLNVKVLPYF-HFYRGAHGQLESFSCSLAKFQKIKEAIAL 198 (231)
Q Consensus 154 -~~~l~~~~~i~~~Pt~-~~~~~g~~~~~~~~g~~~~~~~l~~~l~~ 198 (231)
...+...|++.++|+. ++++ .+|++.....|..+.+++++.+..
T Consensus 133 ~~g~v~~~~gv~~~P~T~fVID-k~GkVv~~~~G~l~~ee~e~~~~l 178 (184)
T TIGR01626 133 DKGAVKNAWQLNSEDSAIIVLD-KTGKVKFVKEGALSDSDIQTVISL 178 (184)
T ss_pred CcchHHHhcCCCCCCceEEEEC-CCCcEEEEEeCCCCHHHHHHHHHH
Confidence 2235678999999887 5554 445665444445566777664443
No 107
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=99.06 E-value=1e-09 Score=93.83 Aligned_cols=108 Identities=19% Similarity=0.285 Sum_probs=81.9
Q ss_pred CCCeEEeCChHHHHHHHHhc-CCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEE
Q 026887 91 APNMIDIHSTQEFLEALSQA-GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYF 169 (231)
Q Consensus 91 ~~~~~~i~s~~~~~~~l~~~-~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~ 169 (231)
...+.+|.+.++|.+.+... ++..|||+||-+.++.|..|...|..|+++|+.++|++|..+..+ +..+|.+..+||+
T Consensus 124 fG~v~ei~~~e~~l~~ie~~~~~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~vKFvkI~a~~~~-~~~~f~~~~LPtl 202 (265)
T PF02114_consen 124 FGEVYEIDSGEEFLDAIEKESKSTWVVVHIYEPGFPRCEIMNSCLECLARKYPEVKFVKIRASKCP-ASENFPDKNLPTL 202 (265)
T ss_dssp --SEEE--SHHHHHHHCCTSSTT-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TTSEEEEEEECGCC-TTTTS-TTC-SEE
T ss_pred CceEEEccChhhHHHHHhccCCCcEEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEEehhccC-cccCCcccCCCEE
Confidence 35678899999999988653 356899999999999999999999999999999999999998765 7789999999999
Q ss_pred EEEECCCceEEEEecC------ccCHHHHHHHHHHhh
Q 026887 170 HFYRGAHGQLESFSCS------LAKFQKIKEAIALHN 200 (231)
Q Consensus 170 ~~~~~g~~~~~~~~g~------~~~~~~l~~~l~~~~ 200 (231)
++|++|. .+..+.+. ....+.|+.+|.++.
T Consensus 203 lvYk~G~-l~~~~V~l~~~~g~df~~~dlE~~L~~~G 238 (265)
T PF02114_consen 203 LVYKNGD-LIGNFVGLTDLLGDDFFTEDLEAFLIEYG 238 (265)
T ss_dssp EEEETTE-EEEEECTGGGCT-TT--HHHHHHHHHTTT
T ss_pred EEEECCE-EEEeEEehHHhcCCCCCHHHHHHHHHHcC
Confidence 9999876 77776652 234557777777664
No 108
>smart00594 UAS UAS domain.
Probab=99.02 E-value=4.6e-09 Score=79.74 Aligned_cols=84 Identities=10% Similarity=0.159 Sum_probs=63.6
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHH---HHHHHCC-CeEEEEEECCC--CHHHHHHCCCCCCCEEEEEECCCc-----eEE
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLC---RTAEEHP-EIVFLKVNFDE--NKPMCKSLNVKVLPYFHFYRGAHG-----QLE 180 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~-~v~~~~Vd~d~--~~~l~~~~~i~~~Pt~~~~~~g~~-----~~~ 180 (231)
+|+++|+|+++||++|+.+...+- ++.+... ++.+..+|++. ...++.+|++.++|+++++...+| .+.
T Consensus 27 ~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i~~~fv~~~~dv~~~eg~~l~~~~~~~~~P~~~~l~~~~g~~~~~~~~ 106 (122)
T smart00594 27 RRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLIRENFIFWQVDVDTSEGQRVSQFYKLDSFPYVAIVDPRTGQRVIEWVG 106 (122)
T ss_pred cCCEEEEEeCCCCchHHHHHHHHccCHHHHHHHHcCEEEEEecCCChhHHHHHHhcCcCCCCEEEEEecCCCceeEEEec
Confidence 789999999999999999987642 4444443 58888899874 457899999999999999976542 233
Q ss_pred EEecCccCHHHHHHHH
Q 026887 181 SFSCSLAKFQKIKEAI 196 (231)
Q Consensus 181 ~~~g~~~~~~~l~~~l 196 (231)
++. +..+.++|.+.|
T Consensus 107 ~~~-G~~~~~~l~~~l 121 (122)
T smart00594 107 VVE-GEISPEELMTFL 121 (122)
T ss_pred ccc-CCCCHHHHHHhh
Confidence 444 456678887765
No 109
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=99.01 E-value=2.3e-09 Score=77.68 Aligned_cols=72 Identities=28% Similarity=0.595 Sum_probs=63.8
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECC-CCHHHHHHCC--CCCCCEEEEEECCCceEEEEec
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFD-ENKPMCKSLN--VKVLPYFHFYRGAHGQLESFSC 184 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d-~~~~l~~~~~--i~~~Pt~~~~~~g~~~~~~~~g 184 (231)
+++++++||++||++|+.+.|.+.++++++.+ +.++.+|.. ..+.+...|+ +..+|+++++.++.. +....+
T Consensus 32 ~~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~-~~~~~~ 107 (127)
T COG0526 32 GKPVLVDFWAPWCPPCRAEAPLLEELAEEYGGDVEVVAVNVDDENPDLAAEFGVAVRSIPTLLLFKDGKE-VDRLVG 107 (127)
T ss_pred CceEEEEEEcCcCHHHHhhchhHHHHHHHhcCCcEEEEEECCCCChHHHHHHhhhhccCCeEEEEeCcch-hhhhhh
Confidence 78999999999999999999999999999984 999999997 7899999999 999999999888774 544443
No 110
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.00 E-value=7.4e-09 Score=82.83 Aligned_cols=91 Identities=15% Similarity=0.254 Sum_probs=70.9
Q ss_pred CCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC-------C----------------------HHHHH
Q 026887 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-------N----------------------KPMCK 159 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~-------~----------------------~~l~~ 159 (231)
+++++||+||++||+.|....+.+.++.++++ ++.++.|..+. . ..+.+
T Consensus 24 ~~k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~ 103 (171)
T cd02969 24 DGKALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSPENMKAKAKEHGYPFPYLLDETQEVAK 103 (171)
T ss_pred CCCEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCHHHHHHHHHHCCCCceEEECCchHHHH
Confidence 47999999999999999999999999999987 58999888753 1 23577
Q ss_pred HCCCCCCCEEEEEECCCceEEEEec---------CccCHHHHHHHHHHhhcC
Q 026887 160 SLNVKVLPYFHFYRGAHGQLESFSC---------SLAKFQKIKEAIALHNTD 202 (231)
Q Consensus 160 ~~~i~~~Pt~~~~~~g~~~~~~~~g---------~~~~~~~l~~~l~~~~~~ 202 (231)
.|++..+|++++++.++ ++..... ...+.+++.+.|+..+..
T Consensus 104 ~~~v~~~P~~~lid~~G-~v~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 154 (171)
T cd02969 104 AYGAACTPDFFLFDPDG-KLVYRGRIDDSRPGNDPPVTGRDLRAALDALLAG 154 (171)
T ss_pred HcCCCcCCcEEEECCCC-eEEEeecccCCcccccccccHHHHHHHHHHHHcC
Confidence 89999999999997554 4443211 123557899999988753
No 111
>PLN02412 probable glutathione peroxidase
Probab=99.00 E-value=4.3e-09 Score=84.18 Aligned_cols=93 Identities=11% Similarity=0.129 Sum_probs=66.7
Q ss_pred HhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC-------C-HHH----HHHCC-----------
Q 026887 108 SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-------N-KPM----CKSLN----------- 162 (231)
Q Consensus 108 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~-------~-~~l----~~~~~----------- 162 (231)
.+.+++++||+||++||++|+...|.+.++.++|+ ++.++.|+++. . .++ +++++
T Consensus 25 ~~~~gk~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~~~~~~~~~~~~~~fpvl~~~d~ 104 (167)
T PLN02412 25 NQYKGKVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNEEIQQTVCTRFKAEFPIFDKVDV 104 (167)
T ss_pred HHhCCCEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHHHHHHHHHHccCCCCceEeEEee
Confidence 34457999999999999999999999999999987 48999998642 1 121 12211
Q ss_pred -----------------------CCCCCEEEEEECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 163 -----------------------VKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 163 -----------------------i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
+...|+.++++.++..+..+. +..+.++|++.|++.++
T Consensus 105 ~g~~~~~~~~~~~~~~~~~~~~~v~~~p~tflId~~G~vv~~~~-g~~~~~~l~~~i~~~l~ 165 (167)
T PLN02412 105 NGKNTAPLYKYLKAEKGGLFGDAIKWNFTKFLVSKEGKVVQRYA-PTTSPLKIEKDIQNLLG 165 (167)
T ss_pred CCCCCCHHHHHHHhhCCCCCCCCcCCCCeeEEECCCCcEEEEEC-CCCCHHHHHHHHHHHHh
Confidence 334588888866543444554 45677899999988764
No 112
>PF13728 TraF: F plasmid transfer operon protein
Probab=98.95 E-value=1.5e-08 Score=84.34 Aligned_cols=94 Identities=21% Similarity=0.319 Sum_probs=78.0
Q ss_pred HHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECC-----------CCHHHHHHCCCCCCCEEE
Q 026887 102 EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD-----------ENKPMCKSLNVKVLPYFH 170 (231)
Q Consensus 102 ~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d-----------~~~~l~~~~~i~~~Pt~~ 170 (231)
+-++.|++..++.-|+.||...|+.|+.+.|.+..++++| ++.++.|++| .+..++++++|..+|+++
T Consensus 110 ~~~~~l~~la~~~gL~~F~~~~C~~C~~~~pil~~~~~~y-g~~v~~vs~DG~~~~~fp~~~~~~g~~~~l~v~~~Pal~ 188 (215)
T PF13728_consen 110 KRDKALKQLAQKYGLFFFYRSDCPYCQQQAPILQQFADKY-GFSVIPVSLDGRPIPSFPNPRPDPGQAKRLGVKVTPALF 188 (215)
T ss_pred HHHHHHHHHhhCeEEEEEEcCCCchhHHHHHHHHHHHHHh-CCEEEEEecCCCCCcCCCCCCCCHHHHHHcCCCcCCEEE
Confidence 3444555555789999999999999999999999999999 7777777776 357899999999999999
Q ss_pred EEECCCceEEEEecCccCHHHHHHHH
Q 026887 171 FYRGAHGQLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 171 ~~~~g~~~~~~~~g~~~~~~~l~~~l 196 (231)
++..+++....+.-|..+.++|.+-|
T Consensus 189 Lv~~~~~~~~pv~~G~~s~~~L~~ri 214 (215)
T PF13728_consen 189 LVNPNTKKWYPVSQGFMSLDELEDRI 214 (215)
T ss_pred EEECCCCeEEEEeeecCCHHHHHHhh
Confidence 99887767777777778888887643
No 113
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=98.95 E-value=4.9e-09 Score=80.42 Aligned_cols=95 Identities=24% Similarity=0.412 Sum_probs=60.9
Q ss_pred HHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHC---CCCCCCEEEEEECCCc
Q 026887 101 QEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSL---NVKVLPYFHFYRGAHG 177 (231)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~---~i~~~Pt~~~~~~g~~ 177 (231)
++....++....+.-++-|..+|||.|+...|.+.++++..|++.+--+..|++.++.++| +...+|+++|+++++.
T Consensus 30 ~~~~~~l~~~~~~~~ilvi~e~WCgD~~~~vP~l~kiae~~p~i~~~~i~rd~~~el~~~~lt~g~~~IP~~I~~d~~~~ 109 (129)
T PF14595_consen 30 EEQIEKLKSIQKPYNILVITETWCGDCARNVPVLAKIAEANPNIEVRIILRDENKELMDQYLTNGGRSIPTFIFLDKDGK 109 (129)
T ss_dssp HHHHHHHHT--S-EEEEEE--TT-HHHHHHHHHHHHHHHH-TTEEEEEE-HHHHHHHTTTTTT-SS--SSEEEEE-TT--
T ss_pred HHHHHHHHhcCCCcEEEEEECCCchhHHHHHHHHHHHHHhCCCCeEEEEEecCChhHHHHHHhCCCeecCEEEEEcCCCC
Confidence 3444566666677899999999999999999999999999999888878888888877665 6789999999977654
Q ss_pred eEEEEecCccCHHHHHHHHHH
Q 026887 178 QLESFSCSLAKFQKIKEAIAL 198 (231)
Q Consensus 178 ~~~~~~g~~~~~~~l~~~l~~ 198 (231)
++.++.. .++.+.+++++
T Consensus 110 ~lg~wge---rP~~~~~~~~~ 127 (129)
T PF14595_consen 110 ELGRWGE---RPKEVQELVDE 127 (129)
T ss_dssp EEEEEES---S-HHHH-----
T ss_pred EeEEEcC---CCHHHhhcccc
Confidence 6666654 34666666654
No 114
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=98.95 E-value=7.8e-09 Score=81.30 Aligned_cols=45 Identities=13% Similarity=0.110 Sum_probs=39.5
Q ss_pred HHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEEC
Q 026887 107 LSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNF 151 (231)
Q Consensus 107 l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~ 151 (231)
+.+.++|+++|.||++||++|+...|.+.++.++++ ++.++.|++
T Consensus 17 l~~~~Gk~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~ 63 (153)
T TIGR02540 17 LEKYRGKVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPC 63 (153)
T ss_pred HHHhCCCEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEec
Confidence 344568999999999999999999999999999986 589999986
No 115
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=98.91 E-value=7.3e-09 Score=81.42 Aligned_cols=44 Identities=14% Similarity=0.200 Sum_probs=38.4
Q ss_pred HhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECC
Q 026887 108 SQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFD 152 (231)
Q Consensus 108 ~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d 152 (231)
.+.++|+++|+||++||+ |+...|.+.++.+++. ++.++.|+++
T Consensus 18 ~~~~Gk~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~ 63 (152)
T cd00340 18 SKYKGKVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCN 63 (152)
T ss_pred HHhCCCEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccC
Confidence 344589999999999999 9999999999999986 4899998764
No 116
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=98.89 E-value=1.4e-08 Score=68.87 Aligned_cols=69 Identities=14% Similarity=0.361 Sum_probs=53.2
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHH----HHHHCCCCCCCEEEEEECCCceEEEEecCccCHHH
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKP----MCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQK 191 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~----l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~ 191 (231)
+..|+++||++|+.+.+.+++ .++.+..+|++++++ +.+.+++.++|++++. | ++ +.| .+.++
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-----~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP~~~~~--~--~~--~~g--~~~~~ 68 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-----KGIAFEEIDVEKDSAAREEVLKVLGQRGVPVIVIG--H--KI--IVG--FDPEK 68 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-----CCCeEEEEeccCCHHHHHHHHHHhCCCcccEEEEC--C--EE--Eee--CCHHH
Confidence 567999999999999988865 368889999987754 5677999999999874 3 32 444 46688
Q ss_pred HHHHHH
Q 026887 192 IKEAIA 197 (231)
Q Consensus 192 l~~~l~ 197 (231)
|.++|+
T Consensus 69 i~~~i~ 74 (74)
T TIGR02196 69 LDQLLE 74 (74)
T ss_pred HHHHhC
Confidence 887763
No 117
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=98.88 E-value=3e-08 Score=74.21 Aligned_cols=107 Identities=21% Similarity=0.307 Sum_probs=90.2
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEEEE
Q 026887 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (231)
Q Consensus 95 ~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~ 173 (231)
.++++.++.++++.....+.+++-|.-+|-+.|..|...+.++++...+ ..++-+|+++-+++-+-|++...||++||-
T Consensus 6 p~L~s~~~VdqaI~~t~~rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnfa~IylvdideV~~~~~~~~l~~p~tvmfFf 85 (142)
T KOG3414|consen 6 PTLHSGWEVDQAILSTEERLVVIRFGRDWDPTCMKMDELLSSIAEDVSNFAVIYLVDIDEVPDFVKMYELYDPPTVMFFF 85 (142)
T ss_pred cccccHHHHHHHHhcccceEEEEEecCCCCchHhhHHHHHHHHHHHHhhceEEEEEecchhhhhhhhhcccCCceEEEEE
Confidence 4577889999999988899999999999999999999999999999988 788899999999999999999999988776
Q ss_pred CCC--------ceEEEEecCccCHHHHHHHHHHhhc
Q 026887 174 GAH--------GQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 174 ~g~--------~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
+++ |....+++...+.+++++.|+..-.
T Consensus 86 n~kHmkiD~gtgdn~Kin~~~~~kq~~Idiie~iyR 121 (142)
T KOG3414|consen 86 NNKHMKIDLGTGDNNKINFAFEDKQEFIDIIETIYR 121 (142)
T ss_pred cCceEEEeeCCCCCceEEEEeccHHHHHHHHHHHHH
Confidence 643 2333445545567889999986543
No 118
>KOG0914 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=3.9e-09 Score=86.17 Aligned_cols=91 Identities=14% Similarity=0.280 Sum_probs=78.7
Q ss_pred CeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCCCHHHHHHCCCC------
Q 026887 93 NMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDENKPMCKSLNVK------ 164 (231)
Q Consensus 93 ~~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~~~l~~~~~i~------ 164 (231)
.++-.++.+.++..+...+.+.++|.|+|.|.+.|+...|.+.++..+|. +++|.+||+...++.+++|+|.
T Consensus 125 ~ikyf~~~q~~deel~rnk~t~WlIeFfa~ws~~Cv~~spvfaeLS~kyn~~~lkFGkvDiGrfpd~a~kfris~s~~sr 204 (265)
T KOG0914|consen 125 TIKYFTNMQLEDEELDRNKRTYWLIEFFACWSPKCVRFSPVFAELSIKYNNNLLKFGKVDIGRFPDVAAKFRISLSPGSR 204 (265)
T ss_pred heeeecchhhHHHHhccCCceEEEEEEEeecChhhcccccccHHHHHHhCCCCCcccceeeccCcChHHheeeccCcccc
Confidence 34555577788888887778999999999999999999999999999986 4999999999999999999886
Q ss_pred CCCEEEEEECCCceEEEEec
Q 026887 165 VLPYFHFYRGAHGQLESFSC 184 (231)
Q Consensus 165 ~~Pt~~~~~~g~~~~~~~~g 184 (231)
.+||+++|++|+ ++.+...
T Consensus 205 QLPT~ilFq~gk-E~~RrP~ 223 (265)
T KOG0914|consen 205 QLPTYILFQKGK-EVSRRPD 223 (265)
T ss_pred cCCeEEEEccch-hhhcCcc
Confidence 689999999987 6665544
No 119
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=98.84 E-value=2.1e-08 Score=64.59 Aligned_cols=60 Identities=30% Similarity=0.546 Sum_probs=52.1
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHH---HCCCCCCCEEEEEECC
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCK---SLNVKVLPYFHFYRGA 175 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~---~~~i~~~Pt~~~~~~g 175 (231)
++.||++||++|+.+.+.+.++....+++.+..+|++......+ .+++..+|+++++++|
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~ 63 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAELALLNKGVKFEAVDVDEDPALEKELKRYGVGGVPTLVVFGPG 63 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHHHhhCCCcEEEEEEcCCChHHhhHHHhCCCccccEEEEEeCC
Confidence 57899999999999999999985555679999999998876554 8999999999999775
No 120
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=98.82 E-value=6e-08 Score=77.56 Aligned_cols=72 Identities=13% Similarity=0.208 Sum_probs=56.7
Q ss_pred HhcCCCeEEEEEEcCC-ChhhHhhhHHHHHHHHHCCCeEEEEEECCC-----------------------CHHHHHHCCC
Q 026887 108 SQAGDRLVIVEFYGTW-CASCRALFPKLCRTAEEHPEIVFLKVNFDE-----------------------NKPMCKSLNV 163 (231)
Q Consensus 108 ~~~~~k~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~-----------------------~~~l~~~~~i 163 (231)
.+.++++++|+||+.| |++|....|.+.++.+++.++.++.|..|. ...+++.|++
T Consensus 40 ~~~~Gk~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~~~~vv~vs~D~~~~~~~f~~~~~~~~~~~lsD~~~~~~~~~~gv 119 (167)
T PRK00522 40 ADFAGKRKVLNIFPSIDTGVCATSVRKFNQEAAELDNTVVLCISADLPFAQKRFCGAEGLENVITLSDFRDHSFGKAYGV 119 (167)
T ss_pred HHhCCCEEEEEEEcCCCCCccHHHHHHHHHHHHHcCCcEEEEEeCCCHHHHHHHHHhCCCCCceEeecCCccHHHHHhCC
Confidence 3445889999999999 999999999999999998788888887752 1256788888
Q ss_pred CCCC---------EEEEEECCCceEE
Q 026887 164 KVLP---------YFHFYRGAHGQLE 180 (231)
Q Consensus 164 ~~~P---------t~~~~~~g~~~~~ 180 (231)
...| +.++++..+ ++.
T Consensus 120 ~~~~~~~~g~~~r~tfvId~~G-~I~ 144 (167)
T PRK00522 120 AIAEGPLKGLLARAVFVLDENN-KVV 144 (167)
T ss_pred eecccccCCceeeEEEEECCCC-eEE
Confidence 8777 777776443 443
No 121
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=98.81 E-value=3.9e-08 Score=74.14 Aligned_cols=79 Identities=19% Similarity=0.463 Sum_probs=56.8
Q ss_pred eCChHHHHHHHHh--cCCCeEEEEEEcC-------CChhhHhhhHHHHHHHHHCC-CeEEEEEECCCC-------HHHHH
Q 026887 97 IHSTQEFLEALSQ--AGDRLVIVEFYGT-------WCASCRALFPKLCRTAEEHP-EIVFLKVNFDEN-------KPMCK 159 (231)
Q Consensus 97 i~s~~~~~~~l~~--~~~k~vlv~F~a~-------wC~~C~~~~p~l~~l~~~~~-~v~~~~Vd~d~~-------~~l~~ 159 (231)
+.+.++|.+.+++ .++++++|.|+++ ||+.|...+|.+++.-...+ +..++.|.+... ..+..
T Consensus 2 v~gy~~~~~~~~~~~~~~~~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~~~~~~lv~v~VG~r~~Wkdp~n~fR~ 81 (119)
T PF06110_consen 2 VRGYDEFEKLVEEYENSGKPLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKAPENARLVYVEVGDRPEWKDPNNPFRT 81 (119)
T ss_dssp EECHHHHHHHHHC--TTTSEEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH-STTEEEEEEE---HHHHC-TTSHHHH
T ss_pred ccCHHHHHHHHHHhhcCCCeEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhCCCCceEEEEEcCCHHHhCCCCCCceE
Confidence 4567899999876 4578999999975 99999999999998777765 588998888532 23444
Q ss_pred --HCCCCCCCEEEEEECC
Q 026887 160 --SLNVKVLPYFHFYRGA 175 (231)
Q Consensus 160 --~~~i~~~Pt~~~~~~g 175 (231)
++++.++||++-+..+
T Consensus 82 ~p~~~l~~IPTLi~~~~~ 99 (119)
T PF06110_consen 82 DPDLKLKGIPTLIRWETG 99 (119)
T ss_dssp --CC---SSSEEEECTSS
T ss_pred cceeeeeecceEEEECCC
Confidence 6999999999999665
No 122
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=98.76 E-value=4.7e-08 Score=67.24 Aligned_cols=70 Identities=17% Similarity=0.325 Sum_probs=49.6
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHH-----CCCCCCCEEEEEECCCceEEEEecCccCHH
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKS-----LNVKVLPYFHFYRGAHGQLESFSCSLAKFQ 190 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~-----~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~ 190 (231)
++.||++||++|+.+.+.+.++ ++.+-.+|+++.+..... +++.++|++ ++.+|. .+. .....
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~~-----~~~~~~idi~~~~~~~~~~~~~~~~~~~vP~i-~~~~g~-~l~-----~~~~~ 69 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDKL-----GAAYEWVDIEEDEGAADRVVSVNNGNMTVPTV-KFADGS-FLT-----NPSAA 69 (77)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCceEEEeCcCCHhHHHHHHHHhCCCceeCEE-EECCCe-Eec-----CCCHH
Confidence 5679999999999999988766 455667888877666555 489999997 455543 222 14446
Q ss_pred HHHHHHH
Q 026887 191 KIKEAIA 197 (231)
Q Consensus 191 ~l~~~l~ 197 (231)
++.+.|+
T Consensus 70 ~~~~~l~ 76 (77)
T TIGR02200 70 QVKAKLQ 76 (77)
T ss_pred HHHHHhh
Confidence 6766654
No 123
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=98.76 E-value=1.8e-07 Score=79.54 Aligned_cols=98 Identities=17% Similarity=0.203 Sum_probs=80.6
Q ss_pred HHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC-----------HHHHHHCCCCCCCEEEE
Q 026887 103 FLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN-----------KPMCKSLNVKVLPYFHF 171 (231)
Q Consensus 103 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~-----------~~l~~~~~i~~~Pt~~~ 171 (231)
-++.|++..++.-++.||...|+.|+.+.|.+..++++| ++.++.|++|.. ..++++++|..+|++++
T Consensus 141 ~~~~i~~la~~~gL~fFy~~~C~~C~~~apil~~fa~~y-gi~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~Pal~L 219 (256)
T TIGR02739 141 KEKAIQQLSQSYGLFFFYRGKSPISQKMAPVIQAFAKEY-GISVIPISVDGTLIPGLPNSRSDSGQAQHLGVKYFPALYL 219 (256)
T ss_pred HHHHHHHHHhceeEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCccCChHHHHhcCCccCceEEE
Confidence 344455555789999999999999999999999999998 577777776643 55889999999999999
Q ss_pred EECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 172 YRGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 172 ~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
+..+.+....+.-|..+.++|.+-|-....
T Consensus 220 v~~~t~~~~pv~~G~iS~deL~~Ri~~v~~ 249 (256)
T TIGR02739 220 VNPKSQKMSPLAYGFISQDELKERILNVLT 249 (256)
T ss_pred EECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 988777888777788899999888876654
No 124
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=98.74 E-value=5.6e-08 Score=72.94 Aligned_cols=72 Identities=19% Similarity=0.457 Sum_probs=59.6
Q ss_pred HhcCCCeEEEEEEcC-CChhhHhhhHHHHHHHHHCC--CeEEEEEECCCC---------------------HHHHHHCCC
Q 026887 108 SQAGDRLVIVEFYGT-WCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN---------------------KPMCKSLNV 163 (231)
Q Consensus 108 ~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~---------------------~~l~~~~~i 163 (231)
.+..+++++|.||+. ||+.|+...+.+.++.++++ ++.++.|..+.. .++.+.|++
T Consensus 21 ~~l~gk~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~ 100 (124)
T PF00578_consen 21 SDLKGKPVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFLEEYGLPFPVLSDPDGELAKAFGI 100 (124)
T ss_dssp GGGTTSEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHHHHHTCSSEEEEETTSHHHHHTTC
T ss_pred HHHCCCcEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhhhhhccccccccCcchHHHHHcCC
Confidence 334589999999999 99999999999999998876 699998888532 357888999
Q ss_pred C------CCCEEEEEECCCceEE
Q 026887 164 K------VLPYFHFYRGAHGQLE 180 (231)
Q Consensus 164 ~------~~Pt~~~~~~g~~~~~ 180 (231)
. .+|++++++.++ .+.
T Consensus 101 ~~~~~~~~~p~~~lid~~g-~I~ 122 (124)
T PF00578_consen 101 EDEKDTLALPAVFLIDPDG-KIR 122 (124)
T ss_dssp EETTTSEESEEEEEEETTS-BEE
T ss_pred ccccCCceEeEEEEECCCC-EEE
Confidence 9 899999998765 443
No 125
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=98.73 E-value=7.5e-08 Score=73.95 Aligned_cols=85 Identities=14% Similarity=0.097 Sum_probs=62.4
Q ss_pred CCCeEEEEEE-cCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC---------------------CHHHHHHCCCCCC
Q 026887 111 GDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE---------------------NKPMCKSLNVKVL 166 (231)
Q Consensus 111 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~---------------------~~~l~~~~~i~~~ 166 (231)
++++++|.|| +.||+.|....+.+.++.+++. ++.++.|..+. ...+.+.|++...
T Consensus 22 ~gk~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv~~~ 101 (140)
T cd03017 22 RGKPVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEKYGLPFPLLSDPDGKLAKAYGVWGE 101 (140)
T ss_pred CCCcEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCceEEECCccHHHHHhCCccc
Confidence 4789999999 5899999999999999988775 57888777643 2457788999988
Q ss_pred ---------CEEEEEECCCceEEEEecCccCHHHHHHHH
Q 026887 167 ---------PYFHFYRGAHGQLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 167 ---------Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l 196 (231)
|+.++++..+.....+.|. ...+.+.+.+
T Consensus 102 ~~~~~~~~~p~~~lid~~G~v~~~~~g~-~~~~~~~~~~ 139 (140)
T cd03017 102 KKKKYMGIERSTFLIDPDGKIVKVWRKV-KPKGHAEEVL 139 (140)
T ss_pred cccccCCcceeEEEECCCCEEEEEEecC-CccchHHHHh
Confidence 8988887554355555553 3445555443
No 126
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=98.73 E-value=1.1e-07 Score=73.48 Aligned_cols=76 Identities=9% Similarity=0.126 Sum_probs=56.7
Q ss_pred HhcCCCeEEEEEEcCC-ChhhHhhhHHHHHHHHHCCCeEEEEEECCCC-----------------------HHHHHHCCC
Q 026887 108 SQAGDRLVIVEFYGTW-CASCRALFPKLCRTAEEHPEIVFLKVNFDEN-----------------------KPMCKSLNV 163 (231)
Q Consensus 108 ~~~~~k~vlv~F~a~w-C~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~-----------------------~~l~~~~~i 163 (231)
.+.++|+++|+||+.| |++|+...+.+.++.++++++.++.|+.|.. ..+.+.|++
T Consensus 22 ~~~~gk~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~~~~vi~Is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~~gv 101 (143)
T cd03014 22 ADFAGKVKVISVFPSIDTPVCATQTKRFNKEAAKLDNTVVLTISADLPFAQKRWCGAEGVDNVTTLSDFRDHSFGKAYGV 101 (143)
T ss_pred HHhCCCeEEEEEEcCCCCCcCHHHHHHHHHHHHhcCCCEEEEEECCCHHHHHHHHHhcCCCCceEeecCcccHHHHHhCC
Confidence 3345789999999998 6999999999999999998999998888521 345567777
Q ss_pred CC------CCEEEEEECCCceEEEEe
Q 026887 164 KV------LPYFHFYRGAHGQLESFS 183 (231)
Q Consensus 164 ~~------~Pt~~~~~~g~~~~~~~~ 183 (231)
.. .|+.++++..+..+....
T Consensus 102 ~~~~~~~~~~~~~iid~~G~I~~~~~ 127 (143)
T cd03014 102 LIKDLGLLARAVFVIDENGKVIYVEL 127 (143)
T ss_pred eeccCCccceEEEEEcCCCeEEEEEE
Confidence 53 578888764432344444
No 127
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.73 E-value=3.4e-08 Score=77.31 Aligned_cols=66 Identities=23% Similarity=0.408 Sum_probs=53.3
Q ss_pred CCCeEEEEEEcCCChhhHhhhHHHHHHHHHC----CCeEEEEEECCCC-------------------------HHHHHHC
Q 026887 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEH----PEIVFLKVNFDEN-------------------------KPMCKSL 161 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~----~~v~~~~Vd~d~~-------------------------~~l~~~~ 161 (231)
.+|.|.++|.|.||++|+.+.|.+.++.++. +.+.++-|+-|.. ++++++|
T Consensus 32 ~gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~~~W~~iPf~d~~~~~l~~ky 111 (157)
T KOG2501|consen 32 QGKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHHGDWLAIPFGDDLIQKLSEKY 111 (157)
T ss_pred CCcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcCCCeEEecCCCHHHHHHHHhc
Confidence 4799999999999999999999988776653 3466666666533 4578899
Q ss_pred CCCCCCEEEEEECCC
Q 026887 162 NVKVLPYFHFYRGAH 176 (231)
Q Consensus 162 ~i~~~Pt~~~~~~g~ 176 (231)
+|.++|++++.+..+
T Consensus 112 ~v~~iP~l~i~~~dG 126 (157)
T KOG2501|consen 112 EVKGIPALVILKPDG 126 (157)
T ss_pred ccCcCceeEEecCCC
Confidence 999999999988765
No 128
>PTZ00256 glutathione peroxidase; Provisional
Probab=98.68 E-value=1.6e-07 Score=76.16 Aligned_cols=45 Identities=13% Similarity=0.142 Sum_probs=36.7
Q ss_pred HhcCCCeE-EEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECC
Q 026887 108 SQAGDRLV-IVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFD 152 (231)
Q Consensus 108 ~~~~~k~v-lv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d 152 (231)
.+.+++++ ++.+||+||++|+..+|.+.++.++|+ ++.++.|+++
T Consensus 36 s~~~Gk~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~ 83 (183)
T PTZ00256 36 SKFKGKKAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCN 83 (183)
T ss_pred HHhCCCcEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecc
Confidence 34457754 456699999999999999999999986 4899999864
No 129
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=98.67 E-value=2.3e-07 Score=74.42 Aligned_cols=92 Identities=13% Similarity=0.061 Sum_probs=65.6
Q ss_pred cCCCeEEEEEE-cCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCCC----------------------------HHHH
Q 026887 110 AGDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN----------------------------KPMC 158 (231)
Q Consensus 110 ~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~----------------------------~~l~ 158 (231)
.+++++||.|| +.||++|....+.+.++++++. ++.++.|.+|.. ..+.
T Consensus 27 ~~Gk~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~~~~~~~~~~~~~~~~~~f~~l~D~~~~~~ 106 (173)
T cd03015 27 YKGKWVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSHLAWRNTPRKEGGLGKINFPLLADPKKKIS 106 (173)
T ss_pred hCCCEEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHHHHHHHhhhhhCCccCcceeEEECCchhHH
Confidence 34789999999 8999999999999999988875 477777766431 2356
Q ss_pred HHCCCC------CCCEEEEEECCCceEEEEec---CccCHHHHHHHHHHhhc
Q 026887 159 KSLNVK------VLPYFHFYRGAHGQLESFSC---SLAKFQKIKEAIALHNT 201 (231)
Q Consensus 159 ~~~~i~------~~Pt~~~~~~g~~~~~~~~g---~~~~~~~l~~~l~~~~~ 201 (231)
+.|++. ..|+.++++..+.....+.+ ...+.+++.+.|++...
T Consensus 107 ~~~gv~~~~~~~~~p~~~lID~~G~I~~~~~~~~~~~~~~~~il~~l~~~~~ 158 (173)
T cd03015 107 RDYGVLDEEEGVALRGTFIIDPEGIIRHITVNDLPVGRSVDETLRVLDALQF 158 (173)
T ss_pred HHhCCccccCCceeeEEEEECCCCeEEEEEecCCCCCCCHHHHHHHHHHhhh
Confidence 778886 57788888755433444432 22356778888876543
No 130
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=98.65 E-value=3.8e-07 Score=63.35 Aligned_cols=74 Identities=18% Similarity=0.333 Sum_probs=56.3
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHH
Q 026887 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 117 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l 196 (231)
|.+++++|+.|..+...++++.+++ ++.+--+|.++.+++ .+|||.++|++++ || + ..+.|..++.++|+++|
T Consensus 3 I~v~~~~C~~C~~~~~~~~~~~~~~-~i~~ei~~~~~~~~~-~~ygv~~vPalvI--ng--~-~~~~G~~p~~~el~~~l 75 (76)
T PF13192_consen 3 IKVFSPGCPYCPELVQLLKEAAEEL-GIEVEIIDIEDFEEI-EKYGVMSVPALVI--NG--K-VVFVGRVPSKEELKELL 75 (76)
T ss_dssp EEEECSSCTTHHHHHHHHHHHHHHT-TEEEEEEETTTHHHH-HHTT-SSSSEEEE--TT--E-EEEESS--HHHHHHHHH
T ss_pred EEEeCCCCCCcHHHHHHHHHHHHhc-CCeEEEEEccCHHHH-HHcCCCCCCEEEE--CC--E-EEEEecCCCHHHHHHHh
Confidence 3446888999999999999999998 577777778666677 9999999999965 64 3 33566567788998887
Q ss_pred H
Q 026887 197 A 197 (231)
Q Consensus 197 ~ 197 (231)
+
T Consensus 76 ~ 76 (76)
T PF13192_consen 76 E 76 (76)
T ss_dssp H
T ss_pred C
Confidence 5
No 131
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=98.64 E-value=3e-07 Score=72.85 Aligned_cols=79 Identities=15% Similarity=0.217 Sum_probs=53.1
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHH---HHHHHCC-CeEEEEEECCCCHHHHHHC--------CCCCCC
Q 026887 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLC---RTAEEHP-EIVFLKVNFDENKPMCKSL--------NVKVLP 167 (231)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~-~v~~~~Vd~d~~~~l~~~~--------~i~~~P 167 (231)
.+.|+.+-++ +|+++|+++.+||+.|+.|..... ++++.+. ++.-++||.++.+++...| +..|+|
T Consensus 27 ~ea~~~Ak~e--~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~lN~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwP 104 (163)
T PF03190_consen 27 EEALEKAKKE--NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYLNRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWP 104 (163)
T ss_dssp HHHHHHHHHH--T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHHHHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SS
T ss_pred HHHHHHHHhc--CCcEEEEEEecCCcchhhhcccCcCCHHHHHHHhCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCC
Confidence 5667776555 899999999999999999986432 4555543 5899999999999998887 789999
Q ss_pred EEEEEECCCceEE
Q 026887 168 YFHFYRGAHGQLE 180 (231)
Q Consensus 168 t~~~~~~g~~~~~ 180 (231)
+.+|....+..+.
T Consensus 105 l~vfltPdg~p~~ 117 (163)
T PF03190_consen 105 LTVFLTPDGKPFF 117 (163)
T ss_dssp EEEEE-TTS-EEE
T ss_pred ceEEECCCCCeee
Confidence 9999987653333
No 132
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=98.63 E-value=4.8e-07 Score=68.59 Aligned_cols=105 Identities=20% Similarity=0.281 Sum_probs=80.9
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCC-EEEEE
Q 026887 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLP-YFHFY 172 (231)
Q Consensus 95 ~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~P-t~~~~ 172 (231)
.++++..+.++++.+..++.+++.|.-+|-+.|.++...+.+++++.++ ..++.||+++-+++.+.|.+. -| |++||
T Consensus 3 ~~L~s~~~VDqAI~~e~drvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~a~IY~vDi~~Vpdfn~~yel~-dP~tvmFF 81 (133)
T PF02966_consen 3 PHLHSGWHVDQAILSEEDRVVVIRFGRDWDPVCMQMDEILYKIAEKVKNFAVIYLVDIDEVPDFNQMYELY-DPCTVMFF 81 (133)
T ss_dssp EEE-SHHHHHHHHHH-SSSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTEEEEEEETTTTHCCHHHTTS--SSEEEEEE
T ss_pred cccCccchHHHHHhccCceEEEEEeCCCCCccHHHHHHHHHHHHHHhhcceEEEEEEcccchhhhcccccC-CCeEEEEE
Confidence 4678889999999988899999999999999999999999999999888 789999999999999999999 66 66666
Q ss_pred ECCC--------ceEEEEecCccCHHHHHHHHHHhh
Q 026887 173 RGAH--------GQLESFSCSLAKFQKIKEAIALHN 200 (231)
Q Consensus 173 ~~g~--------~~~~~~~g~~~~~~~l~~~l~~~~ 200 (231)
-+++ |....+.+...+.+++.+.++..-
T Consensus 82 ~rnkhm~vD~GtgnnnKin~~~~~kqe~iDiie~iy 117 (133)
T PF02966_consen 82 FRNKHMMVDFGTGNNNKINWAFEDKQEFIDIIETIY 117 (133)
T ss_dssp ETTEEEEEESSSSSSSSBCS--SCHHHHHHHHHHHH
T ss_pred ecCeEEEEEecCCCccEEEEEcCcHHHHHHHHHHHH
Confidence 4433 111223333456788888888653
No 133
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.63 E-value=3.7e-08 Score=80.92 Aligned_cols=103 Identities=19% Similarity=0.328 Sum_probs=85.5
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEE
Q 026887 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (231)
Q Consensus 94 ~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~ 173 (231)
++.+...++| +.+ +++..+++||+.||.+|+.+...++.+++..+++.+++++.++.++++..+.+..+|++.++.
T Consensus 3 v~~i~~~~~f---~~~-~~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~~~~~~~k~~a~~~~eis~~~~v~~vp~~~~~~ 78 (227)
T KOG0911|consen 3 VQFIVFQEQF---LDQ-KGKLLVLHFWAIWAVVQKQMDQVFDHLAEYFKNAQFLKLEAEEFPEISNLIAVEAVPYFVFFF 78 (227)
T ss_pred ceeehhHHHH---HHh-ccchhhhhhhhhhhhhhhhHHHHHHHHHHhhhhheeeeehhhhhhHHHHHHHHhcCceeeeee
Confidence 4566777788 333 589999999999999999999999999998889999999999999999999999999999998
Q ss_pred CCCceEEEEecCccCHHHHHHHHHHhhcCC
Q 026887 174 GAHGQLESFSCSLAKFQKIKEAIALHNTDR 203 (231)
Q Consensus 174 ~g~~~~~~~~g~~~~~~~l~~~l~~~~~~~ 203 (231)
.|+ .+.+..+ ..+..+...++.+....
T Consensus 79 ~~~-~v~~l~~--~~~~~~~~~~~~~~~~~ 105 (227)
T KOG0911|consen 79 LGE-KVDRLSG--ADPPFLVSKVEKLAESG 105 (227)
T ss_pred cch-hhhhhhc--cCcHHHHHHHHHhhhhc
Confidence 876 6666666 44456666666665544
No 134
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=98.61 E-value=8.4e-07 Score=75.10 Aligned_cols=97 Identities=13% Similarity=0.180 Sum_probs=77.3
Q ss_pred HHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCC-----------CHHHHHHCCCCCCCEEEEE
Q 026887 104 LEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE-----------NKPMCKSLNVKVLPYFHFY 172 (231)
Q Consensus 104 ~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~-----------~~~l~~~~~i~~~Pt~~~~ 172 (231)
++.|++..++.-|++||...|+.|+.+.|.+..++++| ++.++.|++|- +...+++++|..+|+++++
T Consensus 135 ~~~i~~la~~~GL~fFy~s~Cp~C~~~aPil~~fa~~y-g~~v~~VS~DG~~~p~fp~~~~d~gqa~~l~v~~~PAl~Lv 213 (248)
T PRK13703 135 RQAIAKLAEHYGLMFFYRGQDPIDGQLAQVINDFRDTY-GLSVIPVSVDGVINPLLPDSRTDQGQAQRLGVKYFPALMLV 213 (248)
T ss_pred HHHHHHHHhcceEEEEECCCCchhHHHHHHHHHHHHHh-CCeEEEEecCCCCCCCCCCCccChhHHHhcCCcccceEEEE
Confidence 34455555678999999999999999999999999998 55555555542 2346789999999999999
Q ss_pred ECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 173 RGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 173 ~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
..+.+....+.-|..+.++|.+-|.....
T Consensus 214 ~~~t~~~~pv~~G~iS~deL~~Ri~~v~t 242 (248)
T PRK13703 214 DPKSGSVRPLSYGFITQDDLAKRFLNVST 242 (248)
T ss_pred ECCCCcEEEEeeccCCHHHHHHHHHHHHh
Confidence 88877887777778888999888876643
No 135
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=98.61 E-value=4.5e-07 Score=70.41 Aligned_cols=86 Identities=13% Similarity=0.113 Sum_probs=58.2
Q ss_pred CC-CeEEEEEE-cCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC---------------------C--HHHHHHCCC
Q 026887 111 GD-RLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE---------------------N--KPMCKSLNV 163 (231)
Q Consensus 111 ~~-k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~---------------------~--~~l~~~~~i 163 (231)
++ ++++|.|| ++||+.|....|.+.++.++++ ++.++.|..+. . ..+.+.|++
T Consensus 26 ~g~k~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~g~ 105 (149)
T cd03018 26 RGRKPVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRAWAEENGLTFPLLSDFWPHGEVAKAYGV 105 (149)
T ss_pred cCCCeEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHHHHHhcCCCceEecCCCchhHHHHHhCC
Confidence 35 88888888 9999999999999999988875 58888776642 2 456677887
Q ss_pred CC----CC--EEEEEECCCceEEEEecCc---cCHHHHHHHH
Q 026887 164 KV----LP--YFHFYRGAHGQLESFSCSL---AKFQKIKEAI 196 (231)
Q Consensus 164 ~~----~P--t~~~~~~g~~~~~~~~g~~---~~~~~l~~~l 196 (231)
.. +| +.++++..+..+..+.+.. .+..++.+.|
T Consensus 106 ~~~~~~~~~~~~~lid~~G~v~~~~~~~~~~~~~~~~~~~~~ 147 (149)
T cd03018 106 FDEDLGVAERAVFVIDRDGIIRYAWVSDDGEPRDLPDYDEAL 147 (149)
T ss_pred ccccCCCccceEEEECCCCEEEEEEecCCcccccchhHHHHh
Confidence 73 33 7777764443445555532 3334454444
No 136
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=98.60 E-value=5.5e-07 Score=73.32 Aligned_cols=93 Identities=10% Similarity=0.090 Sum_probs=66.2
Q ss_pred HhcCCCeEEEEEE-cCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC-------------------------CHHHHH
Q 026887 108 SQAGDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-------------------------NKPMCK 159 (231)
Q Consensus 108 ~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~-------------------------~~~l~~ 159 (231)
.+.+++++||+|| ++||+.|....+.+.++.+++. ++.++.|.+|. ...+++
T Consensus 27 ~d~~Gk~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~~~~~~~~~~~~~l~fpllsD~~~~~a~ 106 (187)
T TIGR03137 27 EDVKGKWSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVHKAWHDTSEAIGKITYPMLGDPTGVLTR 106 (187)
T ss_pred HHHCCCEEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHHHHHHhhhhhccCcceeEEECCccHHHH
Confidence 3445789999999 9999999999999999888874 57777777653 235678
Q ss_pred HCCCC------CCCEEEEEECCCceEEEE-ec---CccCHHHHHHHHHHhhc
Q 026887 160 SLNVK------VLPYFHFYRGAHGQLESF-SC---SLAKFQKIKEAIALHNT 201 (231)
Q Consensus 160 ~~~i~------~~Pt~~~~~~g~~~~~~~-~g---~~~~~~~l~~~l~~~~~ 201 (231)
.|++. ..|+.++++..+ .+... .. ...+.+++.+.|+...-
T Consensus 107 ~~gv~~~~~g~~~p~tfiID~~G-~I~~~~~~~~~~~~~~~~ll~~l~~~~~ 157 (187)
T TIGR03137 107 NFGVLIEEAGLADRGTFVIDPEG-VIQAVEITDNGIGRDASELLRKIKAAQY 157 (187)
T ss_pred HhCCcccCCCceeeEEEEECCCC-EEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 88986 458888886544 44433 22 22467788887765433
No 137
>PRK13190 putative peroxiredoxin; Provisional
Probab=98.56 E-value=7.2e-07 Score=73.55 Aligned_cols=91 Identities=10% Similarity=0.162 Sum_probs=67.4
Q ss_pred cCCCeEEE-EEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC---------------------------CHHHHH
Q 026887 110 AGDRLVIV-EFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE---------------------------NKPMCK 159 (231)
Q Consensus 110 ~~~k~vlv-~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~---------------------------~~~l~~ 159 (231)
.+++.++| .||++||+.|....+.+.++.+++. ++.++.|.+|. ...+++
T Consensus 25 ~~gk~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~~w~~~~~~~~g~~~~fPll~D~~~~ia~ 104 (202)
T PRK13190 25 YKGKWVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHIAWLRDIEERFGIKIPFPVIADIDKELAR 104 (202)
T ss_pred hCCCEEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCceEEEEECCChHHHH
Confidence 34676655 6899999999999999999888875 57777776652 234677
Q ss_pred HCCCC------CCCEEEEEECCCceEEEEe----cCccCHHHHHHHHHHhhc
Q 026887 160 SLNVK------VLPYFHFYRGAHGQLESFS----CSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 160 ~~~i~------~~Pt~~~~~~g~~~~~~~~----g~~~~~~~l~~~l~~~~~ 201 (231)
.|++. .+|+.++++.++ .+.... ..+.+.+++.+.|+....
T Consensus 105 ~ygv~~~~~g~~~p~~fiId~~G-~I~~~~~~~~~~gr~~~ellr~l~~l~~ 155 (202)
T PRK13190 105 EYNLIDENSGATVRGVFIIDPNQ-IVRWMIYYPAETGRNIDEIIRITKALQV 155 (202)
T ss_pred HcCCccccCCcEEeEEEEECCCC-EEEEEEEeCCCCCCCHHHHHHHHHHhhh
Confidence 88884 589999987654 665443 345788999999987643
No 138
>COG2143 Thioredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=98.55 E-value=9.1e-07 Score=68.94 Aligned_cols=88 Identities=14% Similarity=0.252 Sum_probs=69.0
Q ss_pred CCCeEEEEEEcCCChhhHhhhHHHH---HHHHHCC-CeEEEEEECCC----------------CHHHHHHCCCCCCCEEE
Q 026887 111 GDRLVIVEFYGTWCASCRALFPKLC---RTAEEHP-EIVFLKVNFDE----------------NKPMCKSLNVKVLPYFH 170 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~~-~v~~~~Vd~d~----------------~~~l~~~~~i~~~Pt~~ 170 (231)
.++..++.|-.+.|..|..+...+. ++.+-+. ++.++.++++. ..+|++.|+++++||++
T Consensus 41 ~~Kylllmfes~~C~yC~~~KKd~~~~krlrEylk~hf~~~~l~i~~skpv~f~~g~kee~~s~~ELa~kf~vrstPtfv 120 (182)
T COG2143 41 NDKYLLLMFESNGCSYCERFKKDLKNVKRLREYLKEHFSAYYLNISYSKPVLFKVGDKEEKMSTEELAQKFAVRSTPTFV 120 (182)
T ss_pred cCcEEEEEEcCCCChHHHHHHHhhcchHHHHHHHhhCeEEEEEEeccCcceEeecCceeeeecHHHHHHHhccccCceEE
Confidence 3899999999999999999998775 4555554 48888888742 25899999999999999
Q ss_pred EEECCCceEEEEecCccCHHHHHHHHHHh
Q 026887 171 FYRGAHGQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 171 ~~~~g~~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
||+..++.+..+.| ...++++...++-.
T Consensus 121 Ffdk~Gk~Il~lPG-Y~ppe~Fl~vlkYV 148 (182)
T COG2143 121 FFDKTGKTILELPG-YMPPEQFLAVLKYV 148 (182)
T ss_pred EEcCCCCEEEecCC-CCCHHHHHHHHHHH
Confidence 99776556666666 56678887777644
No 139
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=98.54 E-value=7e-07 Score=69.03 Aligned_cols=43 Identities=21% Similarity=0.367 Sum_probs=34.7
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCCC
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN 154 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~ 154 (231)
++.+++.||+.||+.|+...|.+.++.+++. ++.++.|..+..
T Consensus 24 ~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~ 68 (149)
T cd02970 24 GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESP 68 (149)
T ss_pred CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCH
Confidence 3455555569999999999999999999874 688998887644
No 140
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=98.52 E-value=1.8e-06 Score=70.44 Aligned_cols=92 Identities=11% Similarity=0.133 Sum_probs=68.5
Q ss_pred HhcCCCeEEEEEE-cCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC-------------------------CHHHHH
Q 026887 108 SQAGDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE-------------------------NKPMCK 159 (231)
Q Consensus 108 ~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~-------------------------~~~l~~ 159 (231)
.+..+++++|.|| ++||+.|....+.+.+..+++. ++.++.|..|. +..+++
T Consensus 27 ~d~~Gk~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~~~~a~~~~~~~~~~l~fpllsD~~~~ia~ 106 (187)
T PRK10382 27 KDTEGRWSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHFTHKAWHSSSETIAKIKYAMIGDPTGALTR 106 (187)
T ss_pred HHhCCCeEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHhhccccCCceeEEEcCchHHHH
Confidence 3445789999999 9999999999999999999885 57787777653 245788
Q ss_pred HCCC----CCC--CEEEEEECCCceEEEEe----cCccCHHHHHHHHHHhh
Q 026887 160 SLNV----KVL--PYFHFYRGAHGQLESFS----CSLAKFQKIKEAIALHN 200 (231)
Q Consensus 160 ~~~i----~~~--Pt~~~~~~g~~~~~~~~----g~~~~~~~l~~~l~~~~ 200 (231)
.|++ .++ |+.++++.++ .+.... ..+.+.+++.+.|+...
T Consensus 107 ~ygv~~~~~g~~~r~tfIID~~G-~I~~~~~~~~~~~~~~~eil~~l~alq 156 (187)
T PRK10382 107 NFDNMREDEGLADRATFVVDPQG-IIQAIEVTAEGIGRDASDLLRKIKAAQ 156 (187)
T ss_pred HcCCCcccCCceeeEEEEECCCC-EEEEEEEeCCCCCCCHHHHHHHHHhhh
Confidence 8998 366 9999887554 543332 23357788888887554
No 141
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=98.50 E-value=2.8e-08 Score=82.08 Aligned_cols=98 Identities=20% Similarity=0.317 Sum_probs=80.9
Q ss_pred eCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCCCHHHHHHCCCCCCCEEEEEEC
Q 026887 97 IHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDENKPMCKSLNVKVLPYFHFYRG 174 (231)
Q Consensus 97 i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~ 174 (231)
..+.+++...+. .-+|+.|+++||+.|+...|.++.++.--. ++.+.+||++.++.+.-+|-+...||++-.++
T Consensus 28 ~~~eenw~~~l~----gewmi~~~ap~~psc~~~~~~~~~~a~~s~dL~v~va~VDvt~npgLsGRF~vtaLptIYHvkD 103 (248)
T KOG0913|consen 28 RIDEENWKELLT----GEWMIEFGAPWCPSCSDLIPHLENFATVSLDLGVKVAKVDVTTNPGLSGRFLVTALPTIYHVKD 103 (248)
T ss_pred Eecccchhhhhc----hHHHHHhcCCCCccccchHHHHhccCCccCCCceeEEEEEEEeccccceeeEEEecceEEEeec
Confidence 345667776663 458999999999999999999998877544 49999999999999999999999999999988
Q ss_pred CCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 175 AHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 175 g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
|+..+|.|. .+.+.++.+++....
T Consensus 104 --GeFrrysga-Rdk~dfisf~~~r~w 127 (248)
T KOG0913|consen 104 --GEFRRYSGA-RDKNDFISFEEHREW 127 (248)
T ss_pred --cccccccCc-ccchhHHHHHHhhhh
Confidence 578888875 445888888875433
No 142
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.50 E-value=8.7e-07 Score=65.95 Aligned_cols=80 Identities=21% Similarity=0.517 Sum_probs=64.0
Q ss_pred eCChHHHHHHHHhc-CCCeEEEEEEc--------CCChhhHhhhHHHHHHHHHCC-CeEEEEEECCCC-------HHHHH
Q 026887 97 IHSTQEFLEALSQA-GDRLVIVEFYG--------TWCASCRALFPKLCRTAEEHP-EIVFLKVNFDEN-------KPMCK 159 (231)
Q Consensus 97 i~s~~~~~~~l~~~-~~k~vlv~F~a--------~wC~~C~~~~p~l~~l~~~~~-~v~~~~Vd~d~~-------~~l~~ 159 (231)
....++|++.+++. +++.+++.|++ +||+.|.+.+|.+.+.-+..+ ++.|+.|++.+. ..+..
T Consensus 9 ~~g~e~~~~~~~~~~n~~~ifvlF~gskd~~tGqSWCPdCV~AEPvi~~alk~ap~~~~~v~v~VG~rp~Wk~p~n~FR~ 88 (128)
T KOG3425|consen 9 LPGYESFEETLKNVENGKTIFVLFLGSKDDTTGQSWCPDCVAAEPVINEALKHAPEDVHFVHVYVGNRPYWKDPANPFRK 88 (128)
T ss_pred cchHHHHHHHHHHHhCCceEEEEEecccCCCCCCcCCchHHHhhHHHHHHHHhCCCceEEEEEEecCCCcccCCCCcccc
Confidence 34578888888875 46779999998 499999999999998888766 599999998643 34556
Q ss_pred HCCC-CCCCEEEEEECCC
Q 026887 160 SLNV-KVLPYFHFYRGAH 176 (231)
Q Consensus 160 ~~~i-~~~Pt~~~~~~g~ 176 (231)
..++ .++||++=|+++.
T Consensus 89 d~~~lt~vPTLlrw~~~~ 106 (128)
T KOG3425|consen 89 DPGILTAVPTLLRWKRQP 106 (128)
T ss_pred CCCceeecceeeEEcCcc
Confidence 6777 8999999997533
No 143
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=98.49 E-value=1.4e-06 Score=68.21 Aligned_cols=89 Identities=13% Similarity=0.114 Sum_probs=59.7
Q ss_pred HhcCCCeEEEEEEcC-CChhhHhhhHHHHHHHHHCC--CeEEEEEECCCC---------------------HHHHHHCCC
Q 026887 108 SQAGDRLVIVEFYGT-WCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN---------------------KPMCKSLNV 163 (231)
Q Consensus 108 ~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~---------------------~~l~~~~~i 163 (231)
.+.++++++|+||+. ||+.|....+.+.++.+++. ++.++.|..|.. ..+.+.|++
T Consensus 26 ~~~~gk~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~gv 105 (154)
T PRK09437 26 TDFQGQRVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLSRFAEKELLNFTLLSDEDHQVAEQFGV 105 (154)
T ss_pred HHhCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHHhCCCCeEEECCCchHHHHhCC
Confidence 334578999999986 68889999999998888874 588888877532 346778888
Q ss_pred CCC------------CEEEEEECCCceEEEEecCccCHHHHHHHHH
Q 026887 164 KVL------------PYFHFYRGAHGQLESFSCSLAKFQKIKEAIA 197 (231)
Q Consensus 164 ~~~------------Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~ 197 (231)
... |+.++++..+..+..+.|. ...+.+.+.++
T Consensus 106 ~~~~~~~~~~~~~~~~~~~lid~~G~i~~~~~g~-~~~~~~~~~~~ 150 (154)
T PRK09437 106 WGEKKFMGKTYDGIHRISFLIDADGKIEHVFDKF-KTSNHHDVVLD 150 (154)
T ss_pred CcccccccccccCcceEEEEECCCCEEEEEEcCC-CcchhHHHHHH
Confidence 654 5666775444344555543 32344444443
No 144
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=98.48 E-value=1.5e-06 Score=61.45 Aligned_cols=76 Identities=13% Similarity=0.213 Sum_probs=58.3
Q ss_pred EEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC----HHHHHHCC--CCCCCEEEEEECCCceEEEEecCccC
Q 026887 115 VIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN----KPMCKSLN--VKVLPYFHFYRGAHGQLESFSCSLAK 188 (231)
Q Consensus 115 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~----~~l~~~~~--i~~~Pt~~~~~~g~~~~~~~~g~~~~ 188 (231)
-++.|+.+||+.|+.....++++..++.++.+..+|+++. .++.+..+ +..+|++++ +|+ .+ .|
T Consensus 2 ~v~iy~~~~C~~C~~a~~~L~~l~~~~~~i~~~~idi~~~~~~~~el~~~~~~~~~~vP~ifi--~g~-~i---gg---- 71 (85)
T PRK11200 2 FVVIFGRPGCPYCVRAKELAEKLSEERDDFDYRYVDIHAEGISKADLEKTVGKPVETVPQIFV--DQK-HI---GG---- 71 (85)
T ss_pred EEEEEeCCCChhHHHHHHHHHhhcccccCCcEEEEECCCChHHHHHHHHHHCCCCCcCCEEEE--CCE-EE---cC----
Confidence 3678999999999999999999998877899999999865 34555554 489999753 654 22 22
Q ss_pred HHHHHHHHHHhh
Q 026887 189 FQKIKEAIALHN 200 (231)
Q Consensus 189 ~~~l~~~l~~~~ 200 (231)
.++|.+.++.+.
T Consensus 72 ~~~~~~~~~~~~ 83 (85)
T PRK11200 72 CTDFEAYVKENL 83 (85)
T ss_pred HHHHHHHHHHhc
Confidence 577888888764
No 145
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=98.37 E-value=1.1e-06 Score=61.49 Aligned_cols=58 Identities=14% Similarity=0.300 Sum_probs=44.6
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCH-----HHHHHCCCCCCCEEEEEECCC
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK-----PMCKSLNVKVLPYFHFYRGAH 176 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~-----~l~~~~~i~~~Pt~~~~~~g~ 176 (231)
++.|+++||++|+.+.+.+.++.-. +.+.++.+|.+++. .+.+.+++.++|++++ +|.
T Consensus 1 V~~f~~~~Cp~C~~~~~~L~~~~i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~v~i--~g~ 63 (84)
T TIGR02180 1 VVVFSKSYCPYCKKAKEILAKLNVK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPNIFI--NGK 63 (84)
T ss_pred CEEEECCCChhHHHHHHHHHHcCCC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 4789999999999999999987621 23788888887553 3667789999999743 543
No 146
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=98.36 E-value=4.1e-06 Score=64.10 Aligned_cols=74 Identities=16% Similarity=0.113 Sum_probs=53.4
Q ss_pred CCCeEEEEEE-cCCChhhHhhhHHHHHHHHHC--CCeEEEEEECCCC----------------------HHHHHHCCCCC
Q 026887 111 GDRLVIVEFY-GTWCASCRALFPKLCRTAEEH--PEIVFLKVNFDEN----------------------KPMCKSLNVKV 165 (231)
Q Consensus 111 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~--~~v~~~~Vd~d~~----------------------~~l~~~~~i~~ 165 (231)
++++++|.|| +.||+.|....+.+.++.+++ +++.++.|..+.. ..+.+.|++..
T Consensus 21 ~gk~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~~~~~~~~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 21 KGKWVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKEGGLNFPLLSDPDGEFAKAYGVLI 100 (140)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcccCCCceEEECCChHHHHHcCCcc
Confidence 4899999999 789999999999999998886 3588887776431 34567777776
Q ss_pred CC---------EEEEEECCCceEEEEec
Q 026887 166 LP---------YFHFYRGAHGQLESFSC 184 (231)
Q Consensus 166 ~P---------t~~~~~~g~~~~~~~~g 184 (231)
.| +++++++.+..+....+
T Consensus 101 ~~~~~~~~~~p~~~lid~~g~i~~~~~~ 128 (140)
T cd02971 101 EKSAGGGLAARATFIIDPDGKIRYVEVE 128 (140)
T ss_pred ccccccCceeEEEEEECCCCcEEEEEec
Confidence 65 56666543324444444
No 147
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=98.36 E-value=3.1e-06 Score=68.71 Aligned_cols=45 Identities=11% Similarity=0.217 Sum_probs=38.7
Q ss_pred HHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECC
Q 026887 107 LSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFD 152 (231)
Q Consensus 107 l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d 152 (231)
+.+.++|++||.|||+||+.|++ .+.|+++.++|. ++.++.+.|+
T Consensus 20 Ls~~~GKvvLVvf~AS~C~~~~q-~~~L~~L~~~y~~~gl~Vlg~p~n 66 (183)
T PRK10606 20 LEKYAGNVLLIVNVASKCGLTPQ-YEQLENIQKAWADQGFVVLGFPCN 66 (183)
T ss_pred HHHhCCCEEEEEEEeCCCCCcHH-HHHHHHHHHHHhhCCeEEEEeecc
Confidence 44556899999999999999975 789999999986 5999999885
No 148
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=98.35 E-value=2.1e-06 Score=65.93 Aligned_cols=43 Identities=19% Similarity=0.376 Sum_probs=37.2
Q ss_pred CCCeEEEEEEcCCChh-hHhhhHHHHHHHHHCC-----CeEEEEEECCC
Q 026887 111 GDRLVIVEFYGTWCAS-CRALFPKLCRTAEEHP-----EIVFLKVNFDE 153 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~-C~~~~p~l~~l~~~~~-----~v~~~~Vd~d~ 153 (231)
++++++|.||++||++ |....+.+.++.+++. ++.++.|..|.
T Consensus 21 ~gk~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~ 69 (142)
T cd02968 21 KGKPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDP 69 (142)
T ss_pred CCCEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECC
Confidence 4789999999999998 9999999999988875 38888888753
No 149
>PRK15000 peroxidase; Provisional
Probab=98.35 E-value=5.6e-06 Score=68.16 Aligned_cols=88 Identities=10% Similarity=0.175 Sum_probs=66.1
Q ss_pred CCCeEEEEEEc-CCChhhHhhhHHHHHHHHHCC--CeEEEEEECCCC----------------------------HHHHH
Q 026887 111 GDRLVIVEFYG-TWCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN----------------------------KPMCK 159 (231)
Q Consensus 111 ~~k~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~----------------------------~~l~~ 159 (231)
++++++|.||+ +||+.|....+.+.++.+++. ++.++.|.+|.. ..+++
T Consensus 33 ~gk~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~~~~~~w~~~~~~~~g~~~i~fpllsD~~~~ia~ 112 (200)
T PRK15000 33 NGKTTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSEFVHNAWRNTPVDKGGIGPVKYAMVADVKREIQK 112 (200)
T ss_pred CCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhCCccccCceEEECCCcHHHH
Confidence 47899999999 599999999999999988885 578887777621 24567
Q ss_pred HCCCC------CCCEEEEEECCCceEEE-Eec---CccCHHHHHHHHHHh
Q 026887 160 SLNVK------VLPYFHFYRGAHGQLES-FSC---SLAKFQKIKEAIALH 199 (231)
Q Consensus 160 ~~~i~------~~Pt~~~~~~g~~~~~~-~~g---~~~~~~~l~~~l~~~ 199 (231)
.|++. .+|+.++++..+ .+.. ..+ .+.+.+++.+.|+..
T Consensus 113 ~ygv~~~~~g~~~r~tfiID~~G-~I~~~~~~~~~~gr~~~eilr~l~al 161 (200)
T PRK15000 113 AYGIEHPDEGVALRGSFLIDANG-IVRHQVVNDLPLGRNIDEMLRMVDAL 161 (200)
T ss_pred HcCCccCCCCcEEeEEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 78887 689999987554 4433 333 335778888888754
No 150
>PF11009 DUF2847: Protein of unknown function (DUF2847); InterPro: IPR022551 Members of this protein family, including YtxJ from Bacillus subtilis, occur in species that encode proteins for synthesizing bacillithiol. The protein is described as thioredoxin-like, while another bacillithiol-associated protein, YpdA (TIGR04018 from TIGRFAMS), is described as thioredoxin reductase-like. ; PDB: 3IV4_A.
Probab=98.34 E-value=9.5e-06 Score=59.69 Aligned_cols=97 Identities=14% Similarity=0.183 Sum_probs=69.0
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCH----HHHHHCCCC-CCCE
Q 026887 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENK----PMCKSLNVK-VLPY 168 (231)
Q Consensus 95 ~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~----~l~~~~~i~-~~Pt 168 (231)
..+++.++++++++...+++++|+=.++.|+-.......+++.....++ +.++-+|+-++. .++++|||. .=|.
T Consensus 2 ~~L~t~eql~~i~~~S~~~~~~iFKHSt~C~IS~~a~~~~e~~~~~~~~~~~~y~l~v~~~R~vSn~IAe~~~V~HeSPQ 81 (105)
T PF11009_consen 2 KPLTTEEQLEEILEESKEKPVLIFKHSTRCPISAMALREFEKFWEESPDEIPVYYLDVIEYRPVSNAIAEDFGVKHESPQ 81 (105)
T ss_dssp -E--SHHHHHHHHHH---SEEEEEEE-TT-HHHHHHHHHHHHHHHHHT----EEEEEGGGGHHHHHHHHHHHT----SSE
T ss_pred CccCCHHHHHHHHHhcccCcEEEEEeCCCChhhHHHHHHHHHHhhcCCccceEEEEEEEeCchhHHHHHHHhCCCcCCCc
Confidence 5788999999999988899999999999999999999999999888876 999999998764 578899998 4799
Q ss_pred EEEEECCCceEEEEecCccCHHHH
Q 026887 169 FHFYRGAHGQLESFSCSLAKFQKI 192 (231)
Q Consensus 169 ~~~~~~g~~~~~~~~g~~~~~~~l 192 (231)
++++++|+ .+-...-...+.+.|
T Consensus 82 ~ili~~g~-~v~~aSH~~It~~~l 104 (105)
T PF11009_consen 82 VILIKNGK-VVWHASHWDITAEAL 104 (105)
T ss_dssp EEEEETTE-EEEEEEGGG-SHHHH
T ss_pred EEEEECCE-EEEECccccCCHHhc
Confidence 99999986 555444444555544
No 151
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=98.31 E-value=5.7e-06 Score=55.71 Aligned_cols=67 Identities=21% Similarity=0.301 Sum_probs=46.9
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHH----CCCCCCCEEEEEECCCceEEEEecCccCHHH
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKS----LNVKVLPYFHFYRGAHGQLESFSCSLAKFQK 191 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~----~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~ 191 (231)
++.|+++||++|+.+...+.+. ++.+..+|++.+.+..+. .++.++|++++ +| ..+.| .+.++
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~~-----~i~~~~~~i~~~~~~~~~~~~~~~~~~vP~i~~--~~----~~i~g--~~~~~ 68 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDER-----GIPFEEVDVDEDPEALEELKKLNGYRSVPVVVI--GD----EHLSG--FRPDK 68 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHHC-----CCCeEEEeCCCCHHHHHHHHHHcCCcccCEEEE--CC----EEEec--CCHHH
Confidence 5779999999999988877662 677778888876554443 36889999875 33 23333 45566
Q ss_pred HHHH
Q 026887 192 IKEA 195 (231)
Q Consensus 192 l~~~ 195 (231)
|+++
T Consensus 69 l~~~ 72 (73)
T cd02976 69 LRAL 72 (73)
T ss_pred HHhh
Confidence 6654
No 152
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=98.30 E-value=2.3e-05 Score=58.96 Aligned_cols=88 Identities=11% Similarity=0.233 Sum_probs=66.2
Q ss_pred CCCeEEEEEEcC----CChhhHhhh--HHHHHHHHHCCCeEEEEEECCCC--HHHHHHCCCCCCCEEEEEE--CCCc-eE
Q 026887 111 GDRLVIVEFYGT----WCASCRALF--PKLCRTAEEHPEIVFLKVNFDEN--KPMCKSLNVKVLPYFHFYR--GAHG-QL 179 (231)
Q Consensus 111 ~~k~vlv~F~a~----wC~~C~~~~--p~l~~l~~~~~~v~~~~Vd~d~~--~~l~~~~~i~~~Pt~~~~~--~g~~-~~ 179 (231)
..|.++|++|++ ||..|+... |.+.++.. .++.+...|++.. .+++..+++.++|++.++. +++. .+
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~ln--~~fv~w~~dv~~~eg~~la~~l~~~~~P~~~~l~~~~~~~~vv 93 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYIN--TRMLFWACSVAKPEGYRVSQALRERTYPFLAMIMLKDNRMTIV 93 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHHH--cCEEEEEEecCChHHHHHHHHhCCCCCCEEEEEEecCCceEEE
Confidence 389999999999 899997764 34444443 3689999999854 4688999999999999984 3332 34
Q ss_pred EEEecCccCHHHHHHHHHHhhc
Q 026887 180 ESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 180 ~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
.++.| ..++++|...|.....
T Consensus 94 ~~i~G-~~~~~~ll~~L~~~~~ 114 (116)
T cd02991 94 GRLEG-LIQPEDLINRLTFIMD 114 (116)
T ss_pred EEEeC-CCCHHHHHHHHHHHHh
Confidence 55555 5778999999887654
No 153
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=98.27 E-value=7.7e-06 Score=58.11 Aligned_cols=75 Identities=12% Similarity=0.184 Sum_probs=56.6
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC----HHHHHHCCC--CCCCEEEEEECCCceEEEEecCccCH
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN----KPMCKSLNV--KVLPYFHFYRGAHGQLESFSCSLAKF 189 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~----~~l~~~~~i--~~~Pt~~~~~~g~~~~~~~~g~~~~~ 189 (231)
++.|+.+||++|++....++++..+++++.+..+|++.. .++.+..+- ..+|++++ +|+ . .|+ .
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~~~i~~~~idi~~~~~~~~~l~~~~g~~~~tVP~ifi--~g~-~----igG---~ 71 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIERADFEFRYIDIHAEGISKADLEKTVGKPVETVPQIFV--DEK-H----VGG---C 71 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCcccCCCcEEEEECCCCHHHHHHHHHHhCCCCCCcCeEEE--CCE-E----ecC---H
Confidence 577999999999999999999887777888888888753 356666664 79999854 543 2 232 4
Q ss_pred HHHHHHHHHhh
Q 026887 190 QKIKEAIALHN 200 (231)
Q Consensus 190 ~~l~~~l~~~~ 200 (231)
++|.++++++.
T Consensus 72 ~dl~~~~~~~~ 82 (86)
T TIGR02183 72 TDFEQLVKENF 82 (86)
T ss_pred HHHHHHHHhcc
Confidence 77888888754
No 154
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=98.25 E-value=1.8e-05 Score=67.74 Aligned_cols=89 Identities=12% Similarity=0.119 Sum_probs=65.9
Q ss_pred CCCeEEEEEE-cCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC----------------------------CHHHHH
Q 026887 111 GDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE----------------------------NKPMCK 159 (231)
Q Consensus 111 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~----------------------------~~~l~~ 159 (231)
+++++|+.|| ++||+.|....+.+.+..+++. ++.++.|.+|. +..+++
T Consensus 97 kgk~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds~~~h~aw~~~~~~~~g~~~l~fPlLsD~~~~iak 176 (261)
T PTZ00137 97 KDSYGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDSPFSHKAWKELDVRQGGVSPLKFPLFSDISREVSK 176 (261)
T ss_pred CCCeEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhhhhhccccCcceEEEEcCChHHHH
Confidence 4678888888 8999999999999999988885 57777777653 134778
Q ss_pred HCCCC-----CCCEEEEEECCCceEEEEe----cCccCHHHHHHHHHHhh
Q 026887 160 SLNVK-----VLPYFHFYRGAHGQLESFS----CSLAKFQKIKEAIALHN 200 (231)
Q Consensus 160 ~~~i~-----~~Pt~~~~~~g~~~~~~~~----g~~~~~~~l~~~l~~~~ 200 (231)
.||+. ..|+.++++..+ .+.... ..+.+.+++.+.|+...
T Consensus 177 ayGv~~~~g~a~R~tFIID~dG-~I~~~~~~~~~~gr~v~eiLr~l~alq 225 (261)
T PTZ00137 177 SFGLLRDEGFSHRASVLVDKAG-VVKHVAVYDLGLGRSVDETLRLFDAVQ 225 (261)
T ss_pred HcCCCCcCCceecEEEEECCCC-EEEEEEEeCCCCCCCHHHHHHHHHHhc
Confidence 89985 589999997544 544332 34467888888887543
No 155
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=98.25 E-value=2.8e-05 Score=62.08 Aligned_cols=112 Identities=19% Similarity=0.246 Sum_probs=85.8
Q ss_pred ccccccCC-CCeEEeCChHHHHHHHHhcCCCe-EEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHH
Q 026887 84 PKWWEKNA-PNMIDIHSTQEFLEALSQAGDRL-VIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKS 160 (231)
Q Consensus 84 ~~w~~~~~-~~~~~i~s~~~~~~~l~~~~~k~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~ 160 (231)
..|..... |.+.+++ .+++...... +.+ +++.|..........+...+.++++++.+ +.|+.+|++..+.+++.
T Consensus 68 ~~fI~~~~~P~v~~~t-~~n~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~~f~~~d~~~~~~~~~~ 144 (184)
T PF13848_consen 68 KKFIKKNSFPLVPELT-PENFEKLFSS--PKPPVLILFDNKDNESTEAFKKELQDIAKKFKGKINFVYVDADDFPRLLKY 144 (184)
T ss_dssp HHHHHHHSSTSCEEES-TTHHHHHHST--SSEEEEEEEETTTHHHHHHHHHHHHHHHHCTTTTSEEEEEETTTTHHHHHH
T ss_pred HHHHHHhccccccccc-hhhHHHHhcC--CCceEEEEEEcCCchhHHHHHHHHHHHHHhcCCeEEEEEeehHHhHHHHHH
Confidence 34544443 4555554 6678887755 544 88888877888899999999999999987 99999999999999999
Q ss_pred CCCC--CCCEEEEEECCCceEEEEecCccCHHHHHHHHHH
Q 026887 161 LNVK--VLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIAL 198 (231)
Q Consensus 161 ~~i~--~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~ 198 (231)
+++. .+|++++++..++.......+..+.+.|.+++++
T Consensus 145 ~~i~~~~~P~~vi~~~~~~~~~~~~~~~~~~~~i~~Fl~d 184 (184)
T PF13848_consen 145 FGIDEDDLPALVIFDSNKGKYYYLPEGEITPESIEKFLND 184 (184)
T ss_dssp TTTTTSSSSEEEEEETTTSEEEE--SSCGCHHHHHHHHHH
T ss_pred cCCCCccCCEEEEEECCCCcEEcCCCCCCCHHHHHHHhcC
Confidence 9998 8999999985554543333556888999999874
No 156
>PRK13599 putative peroxiredoxin; Provisional
Probab=98.24 E-value=1.5e-05 Score=66.41 Aligned_cols=88 Identities=10% Similarity=0.175 Sum_probs=65.5
Q ss_pred CCCe-EEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCCC---------------------------HHHHHH
Q 026887 111 GDRL-VIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN---------------------------KPMCKS 160 (231)
Q Consensus 111 ~~k~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~---------------------------~~l~~~ 160 (231)
+++. +|+.||++||+.|....+.+.++.+++. ++.++.|.+|.. ..+++.
T Consensus 27 ~Gk~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~w~~~i~~~~~~~i~fPil~D~~~~va~~ 106 (215)
T PRK13599 27 AGKWFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIKWVEWIKDNTNIAIPFPVIADDLGKVSNQ 106 (215)
T ss_pred CCCeEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHHhHHHhcCCCCceeEEECCCchHHHH
Confidence 4666 4689999999999999999999999884 688888887642 246778
Q ss_pred CCCC-------CCCEEEEEECCCceEEEE-e---cCccCHHHHHHHHHHh
Q 026887 161 LNVK-------VLPYFHFYRGAHGQLESF-S---CSLAKFQKIKEAIALH 199 (231)
Q Consensus 161 ~~i~-------~~Pt~~~~~~g~~~~~~~-~---g~~~~~~~l~~~l~~~ 199 (231)
||+. .+|+.++++..+ ++... . ..+.+.+++.+.|+..
T Consensus 107 yg~~~~~~~~~~~R~tfIID~dG-~Ir~~~~~p~~~gr~~~eilr~l~~l 155 (215)
T PRK13599 107 LGMIHPGKGTNTVRAVFIVDDKG-TIRLIMYYPQEVGRNVDEILRALKAL 155 (215)
T ss_pred cCCCccCCCCceeeEEEEECCCC-EEEEEEEcCCCCCCCHHHHHHHHHHh
Confidence 8873 579999997654 44332 2 1345788888888765
No 157
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=98.23 E-value=1.3e-05 Score=66.02 Aligned_cols=88 Identities=9% Similarity=0.181 Sum_probs=62.5
Q ss_pred Ce-EEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC---------------------------CHHHHHHCC
Q 026887 113 RL-VIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE---------------------------NKPMCKSLN 162 (231)
Q Consensus 113 k~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~---------------------------~~~l~~~~~ 162 (231)
++ +|+.||++||+.|....+.+.++.+++. ++.++.|.+|. ...+++.|+
T Consensus 26 k~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~~~i~~~~~~~~~fpil~D~~~~ia~~yg 105 (203)
T cd03016 26 SWGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWIEDIEEYTGVEIPFPIIADPDREVAKLLG 105 (203)
T ss_pred CEEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceeEEECchHHHHHHcC
Confidence 54 5668999999999999999999998885 58888887763 135678888
Q ss_pred CC----CC----CEEEEEECCCceEEEE-ec---CccCHHHHHHHHHHhhc
Q 026887 163 VK----VL----PYFHFYRGAHGQLESF-SC---SLAKFQKIKEAIALHNT 201 (231)
Q Consensus 163 i~----~~----Pt~~~~~~g~~~~~~~-~g---~~~~~~~l~~~l~~~~~ 201 (231)
+. +. |+.++++.++ ++... .+ .+.+.+++.+.|+.+..
T Consensus 106 ~~~~~~~~~~~~r~~fiID~~G-~I~~~~~~~~~~gr~~~ell~~l~~lq~ 155 (203)
T cd03016 106 MIDPDAGSTLTVRAVFIIDPDK-KIRLILYYPATTGRNFDEILRVVDALQL 155 (203)
T ss_pred CccccCCCCceeeEEEEECCCC-eEEEEEecCCCCCCCHHHHHHHHHHHhh
Confidence 76 23 4567775543 55433 22 23567888888876543
No 158
>PRK13189 peroxiredoxin; Provisional
Probab=98.16 E-value=2.1e-05 Score=65.78 Aligned_cols=89 Identities=9% Similarity=0.155 Sum_probs=63.9
Q ss_pred CCCe-EEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCCC---------------------------HHHHHH
Q 026887 111 GDRL-VIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN---------------------------KPMCKS 160 (231)
Q Consensus 111 ~~k~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~---------------------------~~l~~~ 160 (231)
+++. +|+.||++||+.|....+.+.++.+++. ++.++.|.+|.. ..+++.
T Consensus 34 ~Gk~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~h~aw~~~~~~~~g~~i~fPllsD~~~~ia~~ 113 (222)
T PRK13189 34 KGKWFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFSHIKWVEWIKEKLGVEIEFPIIADDRGEIAKK 113 (222)
T ss_pred CCCeEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHHHhHHHhcCcCcceeEEEcCccHHHHH
Confidence 4664 5567889999999999999999988875 578887776531 346778
Q ss_pred CCCC-------CCCEEEEEECCCceEEEEec----CccCHHHHHHHHHHhh
Q 026887 161 LNVK-------VLPYFHFYRGAHGQLESFSC----SLAKFQKIKEAIALHN 200 (231)
Q Consensus 161 ~~i~-------~~Pt~~~~~~g~~~~~~~~g----~~~~~~~l~~~l~~~~ 200 (231)
|++. .+|+.++++..+ .+..... .+.+.+++.+.|+.+.
T Consensus 114 ygv~~~~~~~~~~r~tfIID~~G-~Ir~~~~~~~~~gr~~~eilr~l~alq 163 (222)
T PRK13189 114 LGMISPGKGTNTVRAVFIIDPKG-IIRAILYYPQEVGRNMDEILRLVKALQ 163 (222)
T ss_pred hCCCccccCCCceeEEEEECCCC-eEEEEEecCCCCCCCHHHHHHHHHHhh
Confidence 8875 468888886554 5543322 3457788888887553
No 159
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=98.15 E-value=2.6e-05 Score=73.72 Aligned_cols=88 Identities=13% Similarity=0.163 Sum_probs=68.0
Q ss_pred HHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEE
Q 026887 103 FLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESF 182 (231)
Q Consensus 103 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~ 182 (231)
..+.|+...++..+-.|.+++|++|......+++++.+.+++..-.+|.++.++++++|+|.++|++++ ||+ +. +
T Consensus 467 ~~~~i~~~~~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~~i~~~~i~~~~~~~~~~~~~v~~vP~~~i--~~~--~~-~ 541 (555)
T TIGR03143 467 LLEKIKKITKPVNIKIGVSLSCTLCPDVVLAAQRIASLNPNVEAEMIDVSHFPDLKDEYGIMSVPAIVV--DDQ--QV-Y 541 (555)
T ss_pred HHHHHHhcCCCeEEEEEECCCCCCcHHHHHHHHHHHHhCCCceEEEEECcccHHHHHhCCceecCEEEE--CCE--EE-E
Confidence 333444443333455668999999999999999999999999999999999999999999999999887 543 22 3
Q ss_pred ecCccCHHHHHHHH
Q 026887 183 SCSLAKFQKIKEAI 196 (231)
Q Consensus 183 ~g~~~~~~~l~~~l 196 (231)
.|. .+.++|.++|
T Consensus 542 ~G~-~~~~~~~~~~ 554 (555)
T TIGR03143 542 FGK-KTIEEMLELI 554 (555)
T ss_pred eeC-CCHHHHHHhh
Confidence 343 4667777665
No 160
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=98.13 E-value=8.9e-06 Score=68.52 Aligned_cols=81 Identities=14% Similarity=0.184 Sum_probs=58.4
Q ss_pred CCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEE--E--------------------------------------
Q 026887 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKV--N-------------------------------------- 150 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~V--d-------------------------------------- 150 (231)
.++.+++.|.-+.|++|+++.+.+.++.+. ++++.-+ .
T Consensus 106 ~~k~~I~vFtDp~CpyCkkl~~~l~~~~~~--~v~v~~~~~P~~g~~~~a~~~a~~iwca~d~~~a~~~~~~~~~~~~~~ 183 (232)
T PRK10877 106 QEKHVITVFTDITCGYCHKLHEQMKDYNAL--GITVRYLAFPRQGLDSQAEKDMKSIWCAADRNKAFDDAMKGKDVSPAS 183 (232)
T ss_pred CCCEEEEEEECCCChHHHHHHHHHHHHhcC--CeEEEEEeccCCCCCchHHHHHHHHhcCCCHHHHHHHHHcCCCCCccc
Confidence 368899999999999999999999887542 3333211 1
Q ss_pred ----CCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHHHh
Q 026887 151 ----FDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 151 ----~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
++++.++++++||+++||++ |.+|. .+ .|....++|+++|+++
T Consensus 184 c~~~v~~~~~la~~lgi~gTPtiv-~~~G~-~~----~G~~~~~~L~~~l~~~ 230 (232)
T PRK10877 184 CDVDIADHYALGVQFGVQGTPAIV-LSNGT-LV----PGYQGPKEMKAFLDEH 230 (232)
T ss_pred ccchHHHhHHHHHHcCCccccEEE-EcCCe-Ee----eCCCCHHHHHHHHHHc
Confidence 12235688999999999998 55654 33 3345678999999865
No 161
>PRK13191 putative peroxiredoxin; Provisional
Probab=98.13 E-value=3.3e-05 Score=64.35 Aligned_cols=88 Identities=15% Similarity=0.203 Sum_probs=63.8
Q ss_pred CCCeEE-EEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCCC---------------------------HHHHHH
Q 026887 111 GDRLVI-VEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN---------------------------KPMCKS 160 (231)
Q Consensus 111 ~~k~vl-v~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~---------------------------~~l~~~ 160 (231)
++|+++ +.||++||+.|....+.+.++.+++. |+.++.|.+|.. ..+++.
T Consensus 32 ~GK~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~h~aw~~~~~~~~~~~i~fPllsD~~~~ia~~ 111 (215)
T PRK13191 32 KGRWFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNISHIEWVMWIEKNLKVEVPFPIIADPMGNVAKR 111 (215)
T ss_pred CCCcEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHHHHHHHhhHHHhcCCCCceEEEECCchHHHHH
Confidence 466555 48899999999999999999999884 688888887632 245677
Q ss_pred CCCC-------CCCEEEEEECCCceEEEE-ec---CccCHHHHHHHHHHh
Q 026887 161 LNVK-------VLPYFHFYRGAHGQLESF-SC---SLAKFQKIKEAIALH 199 (231)
Q Consensus 161 ~~i~-------~~Pt~~~~~~g~~~~~~~-~g---~~~~~~~l~~~l~~~ 199 (231)
||+. ..|+.++++.++ .+... .+ .+.+.+++.+.|+..
T Consensus 112 ygv~~~~~~~~~~r~tfIID~~G-~Ir~~~~~~~~~gr~~~eilr~l~al 160 (215)
T PRK13191 112 LGMIHAESSTATVRAVFIVDDKG-TVRLILYYPMEIGRNIDEILRAIRAL 160 (215)
T ss_pred cCCcccccCCceeEEEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHHh
Confidence 8863 368888886554 55443 22 345788888888765
No 162
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=98.08 E-value=4.4e-05 Score=71.49 Aligned_cols=93 Identities=13% Similarity=0.193 Sum_probs=72.6
Q ss_pred HHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEE
Q 026887 101 QEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLE 180 (231)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~ 180 (231)
++..+.++.-.++.-+..|.++.|++|......+++++.+.+++.+-.+|..++++++++|+|.++|++++ +++ .+
T Consensus 105 ~~~~~~i~~~~~~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~~~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~-~~- 180 (517)
T PRK15317 105 QEVIEQIKALDGDFHFETYVSLSCHNCPDVVQALNLMAVLNPNITHTMIDGALFQDEVEARNIMAVPTVFL--NGE-EF- 180 (517)
T ss_pred HHHHHHHHhcCCCeEEEEEEcCCCCCcHHHHHHHHHHHHhCCCceEEEEEchhCHhHHHhcCCcccCEEEE--CCc-EE-
Confidence 34444555544556688999999999999999999999999999999999999999999999999999865 543 22
Q ss_pred EEecCccCHHHHHHHHHHh
Q 026887 181 SFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 181 ~~~g~~~~~~~l~~~l~~~ 199 (231)
+.| ....++|.+.+.+.
T Consensus 181 -~~g-~~~~~~~~~~~~~~ 197 (517)
T PRK15317 181 -GQG-RMTLEEILAKLDTG 197 (517)
T ss_pred -Eec-CCCHHHHHHHHhcc
Confidence 233 35556777666653
No 163
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=98.07 E-value=2.8e-05 Score=63.80 Aligned_cols=92 Identities=12% Similarity=0.182 Sum_probs=65.0
Q ss_pred HhcCCCeEEEEEEc-CCChhhHhhhHHHHHHHHHCC--CeEEEEEECCCC----------------------------HH
Q 026887 108 SQAGDRLVIVEFYG-TWCASCRALFPKLCRTAEEHP--EIVFLKVNFDEN----------------------------KP 156 (231)
Q Consensus 108 ~~~~~k~vlv~F~a-~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~~----------------------------~~ 156 (231)
.+.+++.++|.||+ +||+.|....+.+.++.+++. ++.++.|++|.. .+
T Consensus 32 ~d~~Gk~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~~~~~~~~~~~~~~~~~~~~~fpll~D~~~~ 111 (199)
T PTZ00253 32 SSYKGKWVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSEYAHLQWTLQERKKGGLGTMAIPMLADKTKS 111 (199)
T ss_pred HHHCCCEEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCHHHHHHHHhChHhhCCccccccceEECcHhH
Confidence 34457899999995 889999999999999988886 588888877522 24
Q ss_pred HHHHCCCC------CCCEEEEEECCCceEEEE-ec---CccCHHHHHHHHHHhh
Q 026887 157 MCKSLNVK------VLPYFHFYRGAHGQLESF-SC---SLAKFQKIKEAIALHN 200 (231)
Q Consensus 157 l~~~~~i~------~~Pt~~~~~~g~~~~~~~-~g---~~~~~~~l~~~l~~~~ 200 (231)
+++.|++. .+|+.+++++.+ ++... .+ .+.+.+++.+.|+...
T Consensus 112 ia~~ygv~~~~~g~~~r~~fiID~~G-~i~~~~~~~~~~~r~~~e~l~~l~a~~ 164 (199)
T PTZ00253 112 IARSYGVLEEEQGVAYRGLFIIDPKG-MLRQITVNDMPVGRNVEEVLRLLEAFQ 164 (199)
T ss_pred HHHHcCCcccCCCceEEEEEEECCCC-EEEEEEecCCCCCCCHHHHHHHHHhhh
Confidence 67888885 358888887654 44332 22 3346667777776543
No 164
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=98.05 E-value=3.7e-05 Score=59.39 Aligned_cols=36 Identities=31% Similarity=0.680 Sum_probs=31.3
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEE
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFL 147 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~ 147 (231)
.+.+|+.|+..+|++|+.+.+.+.++..+++++.+.
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~~~~~ 40 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPDVRVV 40 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCCceEE
Confidence 678999999999999999999999988887765444
No 165
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=97.97 E-value=0.00052 Score=52.61 Aligned_cols=109 Identities=19% Similarity=0.189 Sum_probs=82.4
Q ss_pred CCeEEeCChHHHHHHHHhcCCCeEEEEEEcC--CCh-hh-HhhhHHHHHHHHHCCC--eEEEEEECCCCHHHHHHCCCC-
Q 026887 92 PNMIDIHSTQEFLEALSQAGDRLVIVEFYGT--WCA-SC-RALFPKLCRTAEEHPE--IVFLKVNFDENKPMCKSLNVK- 164 (231)
Q Consensus 92 ~~~~~i~s~~~~~~~l~~~~~k~vlv~F~a~--wC~-~C-~~~~p~l~~l~~~~~~--v~~~~Vd~d~~~~l~~~~~i~- 164 (231)
+.++++++.+.++..... ++..+|-|.-. .|. .+ ..+...+.+++++|++ +.|+.+|.++...+.+.||+.
T Consensus 2 ~~~~~l~~~~~~~~~C~~--~~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~ 79 (130)
T cd02983 2 PEIIELTSEDVFEETCEE--KQLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGG 79 (130)
T ss_pred CceEEecCHHHHHhhccC--CCeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCc
Confidence 567889999988888855 57778877543 232 23 3456778899999975 899999999999999999995
Q ss_pred -CCCEEEEEECCCceEEEEecCccCHHHHHHHHHHhhcCC
Q 026887 165 -VLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDR 203 (231)
Q Consensus 165 -~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~~~ 203 (231)
++|+++++...++ ......+..+.+.|.+|++++...+
T Consensus 80 ~~~P~v~i~~~~~~-KY~~~~~~~t~e~i~~Fv~~~l~Gk 118 (130)
T cd02983 80 FGYPAMVAINFRKM-KFATLKGSFSEDGINEFLRELSYGR 118 (130)
T ss_pred cCCCEEEEEecccC-ccccccCccCHHHHHHHHHHHHcCC
Confidence 5999999987543 2221223467799999999998755
No 166
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=97.93 E-value=7.3e-05 Score=63.70 Aligned_cols=83 Identities=11% Similarity=0.268 Sum_probs=58.6
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEEC----------------------------------------
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNF---------------------------------------- 151 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~---------------------------------------- 151 (231)
.+.+|+.|.-+.|++|+++.+.+.++.+. .++.+..+..
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~~-g~V~v~~ip~~~l~~~S~~~a~ailca~d~~~a~~~~~~~~~~~~~~~~~ 195 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVDS-GKVQLRHILVGIIKPDSPGKAAAILAAKDPAKALQEYEASGGKLGLKPPA 195 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhhc-CceEEEEEeccccCcchHHHHHHHHhccCHHHHHHHHHHhhhccCCCccc
Confidence 57889999999999999999998877654 2343332221
Q ss_pred ----------CCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHH
Q 026887 152 ----------DENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIA 197 (231)
Q Consensus 152 ----------d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~ 197 (231)
+++.++.+++||+++|++++- +++|.+..+.|- ...++|.+.|+
T Consensus 196 ~~~~~~~~~i~~n~~l~~~lGv~GTPaiv~~-d~~G~~~~v~G~-~~~~~L~~~l~ 249 (251)
T PRK11657 196 SIPAAVRKQLADNQKLMDDLGANATPAIYYM-DKDGTLQQVVGL-PDPAQLAEIMG 249 (251)
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCCCCEEEEE-CCCCCEEEecCC-CCHHHHHHHhC
Confidence 012337788999999999886 444566666663 56788887775
No 167
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=97.87 E-value=0.00012 Score=50.92 Aligned_cols=70 Identities=11% Similarity=0.219 Sum_probs=49.1
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC---HHHHHHCCCCCCCEEEEEECCCceEEEEecCccC
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN---KPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAK 188 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~---~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~ 188 (231)
++.-++.|+.+||+.|++....|++. ++.+..+|+++. .++.+..+...+|.+++ +|+ . +.|
T Consensus 6 ~~~~V~ly~~~~Cp~C~~ak~~L~~~-----gi~y~~idi~~~~~~~~~~~~~g~~~vP~i~i--~g~-~---igG---- 70 (79)
T TIGR02190 6 KPESVVVFTKPGCPFCAKAKATLKEK-----GYDFEEIPLGNDARGRSLRAVTGATTVPQVFI--GGK-L---IGG---- 70 (79)
T ss_pred CCCCEEEEECCCCHhHHHHHHHHHHc-----CCCcEEEECCCChHHHHHHHHHCCCCcCeEEE--CCE-E---EcC----
Confidence 34557789999999999999888743 566667788765 34556678999999854 543 2 222
Q ss_pred HHHHHHHH
Q 026887 189 FQKIKEAI 196 (231)
Q Consensus 189 ~~~l~~~l 196 (231)
.++|.++|
T Consensus 71 ~~~l~~~l 78 (79)
T TIGR02190 71 SDELEAYL 78 (79)
T ss_pred HHHHHHHh
Confidence 35666655
No 168
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=97.87 E-value=6.1e-05 Score=61.62 Aligned_cols=76 Identities=14% Similarity=0.188 Sum_probs=51.3
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEE--E---------------------------------------
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKV--N--------------------------------------- 150 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~V--d--------------------------------------- 150 (231)
++..++.|+.+.|++|+++.+.+.+ ...++.+..+ .
T Consensus 77 ~~~~i~~f~D~~Cp~C~~~~~~l~~---~~~~v~v~~~~~p~~~~~~s~~~a~~i~ca~d~~~a~~~~~~~~~~~~~~~~ 153 (197)
T cd03020 77 GKRVVYVFTDPDCPYCRKLEKELKP---NADGVTVRIFPVPILGLPDSTAKAAAIWCAKDRAKAWTDAMSGGKVPPPAAS 153 (197)
T ss_pred CCEEEEEEECCCCccHHHHHHHHhh---ccCceEEEEEEcCcCCCccHHHHHHHhhcccCHHHHHHHHHhCCCCCCCccc
Confidence 6889999999999999999998876 2223322211 1
Q ss_pred ----CCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHH
Q 026887 151 ----FDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 151 ----~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l 196 (231)
++++..+++++||+++|+++ |.+|. . +.| ....++|.++|
T Consensus 154 ~~~~i~~~~~l~~~~gi~gtPtii-~~~G~-~---~~G-~~~~~~l~~~L 197 (197)
T cd03020 154 CDNPVAANLALGRQLGVNGTPTIV-LADGR-V---VPG-APPAAQLEALL 197 (197)
T ss_pred cCchHHHHHHHHHHcCCCcccEEE-ECCCe-E---ecC-CCCHHHHHhhC
Confidence 12234588999999999997 66654 3 233 34567776553
No 169
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=97.84 E-value=0.00013 Score=69.04 Aligned_cols=121 Identities=15% Similarity=0.102 Sum_probs=88.6
Q ss_pred eCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEE-CC
Q 026887 97 IHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYR-GA 175 (231)
Q Consensus 97 i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~-~g 175 (231)
-...+++...+.+..++..++.|+.+.|..|.++...+++++...+.+.+...|..++.+++++|++...|++.+++ +|
T Consensus 351 ~~~~~~l~~~~~~l~~~v~l~~~~~~~~~~~~e~~~~l~e~~~~s~~i~~~~~~~~~~~~~~~~~~v~~~P~~~i~~~~~ 430 (555)
T TIGR03143 351 DSLRQQLVGIFGRLENPVTLLLFLDGSNEKSAELQSFLGEFASLSEKLNSEAVNRGEEPESETLPKITKLPTVALLDDDG 430 (555)
T ss_pred HHHHHHHHHHHHhcCCCEEEEEEECCCchhhHHHHHHHHHHHhcCCcEEEEEeccccchhhHhhcCCCcCCEEEEEeCCC
Confidence 33445677777776566678888899999999999999999987777899889998899999999999999999996 43
Q ss_pred CceEEEEecCccCHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCCC
Q 026887 176 HGQLESFSCSLAKFQKIKEAIALHNTDRCSIGPPKGVGDLSLEGIS 221 (231)
Q Consensus 176 ~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (231)
+..-.+|.|-... .++..+|....... ++....++...+.+.
T Consensus 431 ~~~~i~f~g~P~G-~Ef~s~i~~i~~~~---~~~~~l~~~~~~~i~ 472 (555)
T TIGR03143 431 NYTGLKFHGVPSG-HELNSFILALYNAA---GPGQPLGEELLEKIK 472 (555)
T ss_pred cccceEEEecCcc-HhHHHHHHHHHHhc---CCCCCCCHHHHHHHH
Confidence 3233566665443 77888888776543 233334444444433
No 170
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=97.83 E-value=6.4e-05 Score=52.17 Aligned_cols=69 Identities=12% Similarity=0.205 Sum_probs=48.7
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC-H----HHHHHCCCCCCCEEEEEECCCceEEEEecCccCHH
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN-K----PMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQ 190 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~-~----~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~ 190 (231)
++.|+++||+.|+.+...+.++.. .+.++.++.+++ . .+.+..++.++|+++ .+|. . .|+ .+
T Consensus 2 v~~y~~~~Cp~C~~~~~~l~~~~~---~~~~~~v~~~~~~~~~~~~~~~~~g~~~~P~v~--~~g~-~----igg---~~ 68 (82)
T cd03419 2 VVVFSKSYCPYCKRAKSLLKELGV---KPAVVELDQHEDGSEIQDYLQELTGQRTVPNVF--IGGK-F----IGG---CD 68 (82)
T ss_pred EEEEEcCCCHHHHHHHHHHHHcCC---CcEEEEEeCCCChHHHHHHHHHHhCCCCCCeEE--ECCE-E----EcC---HH
Confidence 577999999999999999998755 467778887765 2 355667899999963 3543 2 222 45
Q ss_pred HHHHHHH
Q 026887 191 KIKEAIA 197 (231)
Q Consensus 191 ~l~~~l~ 197 (231)
++.+..+
T Consensus 69 ~~~~~~~ 75 (82)
T cd03419 69 DLMALHK 75 (82)
T ss_pred HHHHHHH
Confidence 5666554
No 171
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=97.82 E-value=0.00025 Score=66.44 Aligned_cols=92 Identities=11% Similarity=0.218 Sum_probs=71.5
Q ss_pred HHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEE
Q 026887 102 EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLES 181 (231)
Q Consensus 102 ~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~ 181 (231)
+..+.++.-.++.-+..|.++.|++|......+++++.+++++..-.+|..+++++.++|++.++|++++ +++ .+
T Consensus 107 ~~~~~~~~~~~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p~i~~~~id~~~~~~~~~~~~v~~VP~~~i--~~~-~~-- 181 (515)
T TIGR03140 107 GIIDRIRRLNGPLHFETYVSLTCQNCPDVVQALNQMALLNPNISHTMIDGALFQDEVEALGIQGVPAVFL--NGE-EF-- 181 (515)
T ss_pred HHHHHHHhcCCCeEEEEEEeCCCCCCHHHHHHHHHHHHhCCCceEEEEEchhCHHHHHhcCCcccCEEEE--CCc-EE--
Confidence 4444455544566688999999999999999999999999999999999999999999999999999876 543 22
Q ss_pred EecCccCHHHHHHHHHHh
Q 026887 182 FSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 182 ~~g~~~~~~~l~~~l~~~ 199 (231)
+.| ....+++.+.+.+.
T Consensus 182 ~~g-~~~~~~~~~~l~~~ 198 (515)
T TIGR03140 182 HNG-RMDLAELLEKLEET 198 (515)
T ss_pred Eec-CCCHHHHHHHHhhc
Confidence 233 34556666666544
No 172
>KOG3171 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.82 E-value=0.00011 Score=60.30 Aligned_cols=106 Identities=18% Similarity=0.326 Sum_probs=83.4
Q ss_pred CCeEEeCChHHHHHHHHhc-CCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEE
Q 026887 92 PNMIDIHSTQEFLEALSQA-GDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFH 170 (231)
Q Consensus 92 ~~~~~i~s~~~~~~~l~~~-~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~ 170 (231)
..+.++.+.++|.+.+... +.-.++|++|-+--.-|-.+...+.-++.+||-++|+++-... -....+|..+++||++
T Consensus 138 ~~V~El~~gkqfld~idke~ks~~i~VhIYEdgi~gcealn~~~~cLAAeyP~vKFckikss~-~gas~~F~~n~lP~Ll 216 (273)
T KOG3171|consen 138 GFVYELETGKQFLDTIDKELKSTTIVVHIYEDGIKGCEALNSSLTCLAAEYPIVKFCKIKSSN-TGASDRFSLNVLPTLL 216 (273)
T ss_pred ceEEEeccchhHHHHHhcccceEEEEEEEecCCCchHHHHhhhHHHhhccCCceeEEEeeecc-ccchhhhcccCCceEE
Confidence 4578999999999999764 4567899999999999999999999999999999999987653 4567899999999999
Q ss_pred EEECCCceEEEEec------CccCHHHHHHHHHHh
Q 026887 171 FYRGAHGQLESFSC------SLAKFQKIKEAIALH 199 (231)
Q Consensus 171 ~~~~g~~~~~~~~g------~~~~~~~l~~~l~~~ 199 (231)
+|++|. .+..+.- ......++..||+.+
T Consensus 217 iYkgGe-LIgNFv~va~qlgedffa~dle~FL~e~ 250 (273)
T KOG3171|consen 217 IYKGGE-LIGNFVSVAEQLGEDFFAGDLESFLNEY 250 (273)
T ss_pred EeeCCc-hhHHHHHHHHHHhhhhhhhhHHHHHHHc
Confidence 999976 4433321 112234566666654
No 173
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=97.81 E-value=9.1e-05 Score=48.60 Aligned_cols=51 Identities=20% Similarity=0.351 Sum_probs=40.5
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHH----HHHHCCCCCCCEEEE
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKP----MCKSLNVKVLPYFHF 171 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~----l~~~~~i~~~Pt~~~ 171 (231)
++.|+.+||++|+.....|++. ++.+-.+|+++.++ +.+..+..++|++++
T Consensus 1 V~vy~~~~C~~C~~~~~~L~~~-----~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~v~i 55 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFLDEK-----GIPYEEVDVDEDEEAREELKELSGVRTVPQVFI 55 (60)
T ss_dssp EEEEESTTSHHHHHHHHHHHHT-----TBEEEEEEGGGSHHHHHHHHHHHSSSSSSEEEE
T ss_pred cEEEEcCCCcCHHHHHHHHHHc-----CCeeeEcccccchhHHHHHHHHcCCCccCEEEE
Confidence 5779999999999999888443 68888888887743 334459999999876
No 174
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=97.77 E-value=0.00013 Score=49.72 Aligned_cols=66 Identities=20% Similarity=0.272 Sum_probs=46.6
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHH---CCCCCCCEEEEEECCCceEEEEecCccCHHHHH
Q 026887 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKS---LNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIK 193 (231)
Q Consensus 117 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~---~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~ 193 (231)
..|..++|+.|+..+..|++. ++.+-.+|++++++..+. .+...+|++++ +|+. .+.| .++++|.
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~~di~~~~~~~~~~~~~g~~~vP~v~~--~g~~---~~~G--~~~~~~~ 69 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALEEH-----GIAFEEINIDEQPEAIDYVKAQGFRQVPVIVA--DGDL---SWSG--FRPDKLK 69 (72)
T ss_pred EEEeCCCCHHHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHcCCcccCEEEE--CCCc---EEec--cCHHHHH
Confidence 568899999999999888753 677888888887655544 48889999755 4432 2223 4556665
Q ss_pred H
Q 026887 194 E 194 (231)
Q Consensus 194 ~ 194 (231)
+
T Consensus 70 ~ 70 (72)
T TIGR02194 70 A 70 (72)
T ss_pred h
Confidence 4
No 175
>PRK10329 glutaredoxin-like protein; Provisional
Probab=97.73 E-value=0.00043 Score=48.62 Aligned_cols=73 Identities=16% Similarity=0.197 Sum_probs=53.6
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHH---HHCCCCCCCEEEEEECCCceEEEEecCccCHHHH
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMC---KSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKI 192 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~---~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l 192 (231)
+..|..+||++|+..+..|++ .++.|-.+|+++.++.. +..+...+|++++ ++. . +.| .+.++|
T Consensus 3 v~lYt~~~Cp~C~~ak~~L~~-----~gI~~~~idi~~~~~~~~~~~~~g~~~vPvv~i--~~~-~---~~G--f~~~~l 69 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAMES-----RGFDFEMINVDRVPEAAETLRAQGFRQLPVVIA--GDL-S---WSG--FRPDMI 69 (81)
T ss_pred EEEEeCCCCHhHHHHHHHHHH-----CCCceEEEECCCCHHHHHHHHHcCCCCcCEEEE--CCE-E---Eec--CCHHHH
Confidence 567899999999999888854 37888889998876533 3457789999865 432 2 223 567899
Q ss_pred HHHHHHhhc
Q 026887 193 KEAIALHNT 201 (231)
Q Consensus 193 ~~~l~~~~~ 201 (231)
.+.+..+..
T Consensus 70 ~~~~~~~~~ 78 (81)
T PRK10329 70 NRLHPAPHA 78 (81)
T ss_pred HHHHHhhhh
Confidence 988877654
No 176
>PHA03050 glutaredoxin; Provisional
Probab=97.65 E-value=0.00026 Score=52.56 Aligned_cols=59 Identities=14% Similarity=0.198 Sum_probs=41.1
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECC-CC----HHHHHHCCCCCCCEEEEEECCC
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD-EN----KPMCKSLNVKVLPYFHFYRGAH 176 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d-~~----~~l~~~~~i~~~Pt~~~~~~g~ 176 (231)
++.|..+|||+|+.....|.+..-+++.+..+.+|-. .. .++.+.-|...+|++++ +|+
T Consensus 15 V~vys~~~CPyC~~ak~~L~~~~i~~~~~~~i~i~~~~~~~~~~~~l~~~tG~~tVP~IfI--~g~ 78 (108)
T PHA03050 15 VTIFVKFTCPFCRNALDILNKFSFKRGAYEIVDIKEFKPENELRDYFEQITGGRTVPRIFF--GKT 78 (108)
T ss_pred EEEEECCCChHHHHHHHHHHHcCCCcCCcEEEECCCCCCCHHHHHHHHHHcCCCCcCEEEE--CCE
Confidence 6679999999999999998877554444555555431 12 34566678899999854 543
No 177
>cd02981 PDI_b_family Protein Disulfide Isomerase (PDIb) family, redox inactive TRX-like domain b; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57, ERp44 and PDIR. PDI, ERp57 (or ERp60), ERp72 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, which contai
Probab=97.64 E-value=0.0009 Score=47.90 Aligned_cols=94 Identities=18% Similarity=0.228 Sum_probs=69.1
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC-CeEEEEEECCCCHHHHHHCCCCCCCEEEEEE
Q 026887 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (231)
Q Consensus 95 ~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~ 173 (231)
..+.+.++++..+.. ++.++|-|+.++|. .....+.++++.+. ++.|..+. +.++.+++++.. |++++|+
T Consensus 2 ~~i~s~~~l~~~~~~--~~~~vvg~f~~~~~---~~~~~f~~~A~~~r~~~~F~~~~---~~~~~~~~~~~~-~~i~l~~ 72 (97)
T cd02981 2 KELTSKEELEKFLDK--DDVVVVGFFKDEES---EEYKTFEKVAESLRDDYGFGHTS---DKEVAKKLKVKP-GSVVLFK 72 (97)
T ss_pred eecCCHHHHHHHhcc--CCeEEEEEECCCCc---HHHHHHHHHHHhcccCCeEEEEC---hHHHHHHcCCCC-CceEEeC
Confidence 457788888887755 78899999999988 45667888888886 57776655 567888887754 8899997
Q ss_pred CCCceEEEEecCccCHHHHHHHHHH
Q 026887 174 GAHGQLESFSCSLAKFQKIKEAIAL 198 (231)
Q Consensus 174 ~g~~~~~~~~g~~~~~~~l~~~l~~ 198 (231)
+.......+.|. ...+.|.+||..
T Consensus 73 ~~~~~~~~y~g~-~~~~~l~~fi~~ 96 (97)
T cd02981 73 PFEEEPVEYDGE-FTEESLVEFIKD 96 (97)
T ss_pred CcccCCccCCCC-CCHHHHHHHHHh
Confidence 754345556664 346888888864
No 178
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=97.61 E-value=0.0002 Score=50.23 Aligned_cols=78 Identities=13% Similarity=0.161 Sum_probs=57.9
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECC--CceEEEEecCccCHHHHH
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGA--HGQLESFSCSLAKFQKIK 193 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g--~~~~~~~~g~~~~~~~l~ 193 (231)
++.|..+.|+-|......+.++.... ++.+-.||+++++++..+|+. .+|.+.+ +| +...........+.++|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~~~~-~~~l~~vDI~~d~~l~~~Y~~-~IPVl~~--~~~~~~~~~~~~~~~~d~~~L~ 77 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVAAEF-PFELEEVDIDEDPELFEKYGY-RIPVLHI--DGIRQFKEQEELKWRFDEEQLR 77 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCCTTS-TCEEEEEETTTTHHHHHHSCT-STSEEEE--TT-GGGCTSEEEESSB-HHHHH
T ss_pred EEEEcCCCCChHHHHHHHHHHHHhhc-CceEEEEECCCCHHHHHHhcC-CCCEEEE--cCcccccccceeCCCCCHHHHH
Confidence 67899999999999999999876654 499999999999999999995 7999665 44 101012223346778888
Q ss_pred HHHH
Q 026887 194 EAIA 197 (231)
Q Consensus 194 ~~l~ 197 (231)
++|+
T Consensus 78 ~~L~ 81 (81)
T PF05768_consen 78 AWLE 81 (81)
T ss_dssp HHHH
T ss_pred HHhC
Confidence 8875
No 179
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=97.57 E-value=0.00027 Score=47.04 Aligned_cols=51 Identities=18% Similarity=0.257 Sum_probs=39.1
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHH----HHHCCCCCCCEEEE
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPM----CKSLNVKVLPYFHF 171 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l----~~~~~i~~~Pt~~~ 171 (231)
++.|+++||++|+.....+.+. ++.+..+|++++++. .+..+...+|++++
T Consensus 2 v~ly~~~~Cp~C~~~~~~L~~~-----~i~~~~~di~~~~~~~~~l~~~~~~~~~P~~~~ 56 (72)
T cd02066 2 VVVFSKSTCPYCKRAKRLLESL-----GIEFEEIDILEDGELREELKELSGWPTVPQIFI 56 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCcEEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5678999999999999988866 367778888876543 34457788898743
No 180
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=97.55 E-value=0.00033 Score=47.79 Aligned_cols=54 Identities=17% Similarity=0.318 Sum_probs=41.3
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHH----HHHHCCCCCCCEEEEEECCC
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKP----MCKSLNVKVLPYFHFYRGAH 176 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~----l~~~~~i~~~Pt~~~~~~g~ 176 (231)
++.|+.+||+.|+.....|++. ++.+..+|++++++ +.+..+-..+|++++ +|+
T Consensus 3 v~ly~~~~C~~C~ka~~~L~~~-----gi~~~~~di~~~~~~~~el~~~~g~~~vP~v~i--~~~ 60 (73)
T cd03027 3 VTIYSRLGCEDCTAVRLFLREK-----GLPYVEINIDIFPERKAELEERTGSSVVPQIFF--NEK 60 (73)
T ss_pred EEEEecCCChhHHHHHHHHHHC-----CCceEEEECCCCHHHHHHHHHHhCCCCcCEEEE--CCE
Confidence 5678999999999999888863 67777888887654 555667788999854 543
No 181
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=97.54 E-value=0.00076 Score=52.64 Aligned_cols=81 Identities=16% Similarity=0.354 Sum_probs=59.7
Q ss_pred CCCeEEEEEEcCCChhhHhhhHHHHHHHHHC--CC-eEEEEEECCCC---------------------------------
Q 026887 111 GDRLVIVEFYGTWCASCRALFPKLCRTAEEH--PE-IVFLKVNFDEN--------------------------------- 154 (231)
Q Consensus 111 ~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~--~~-v~~~~Vd~d~~--------------------------------- 154 (231)
..+.+|+.|+...|++|..+.+.+.++.+++ ++ +.|+-.++-..
T Consensus 11 ~a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (162)
T PF13462_consen 11 DAPITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPVPLDKHSSLRAAMAAECVADQGKYFWFFHELLFSQQE 90 (162)
T ss_dssp TTSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEESSSSHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHCH
T ss_pred CCCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEccccchhHHHHHHHHHHHHHHhHHHHHHHHHHHHhhh
Confidence 3688999999999999999999999998887 43 77776655100
Q ss_pred -----------------------------------HHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHHH
Q 026887 155 -----------------------------------KPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIAL 198 (231)
Q Consensus 155 -----------------------------------~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~ 198 (231)
....++++|.++||+++ ||+ .+ .+..+.++|.+.|++
T Consensus 91 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~tPt~~i--nG~-~~----~~~~~~~~l~~~Id~ 162 (162)
T PF13462_consen 91 NFENKKDIAANAGGSNEQFNKCLNSDEIKAQLEADSQLARQLGITGTPTFFI--NGK-YV----VGPYTIEELKELIDK 162 (162)
T ss_dssp STSSHHHHHHHTTSHHHHHHHHHTSHHHHHHHHHHHHHHHHHT-SSSSEEEE--TTC-EE----ETTTSHHHHHHHHHH
T ss_pred ccchhHHHHHHcCCCHHHHHHHhhchHHHHHHHHHHHHHHHcCCccccEEEE--CCE-Ee----CCCCCHHHHHHHHcC
Confidence 11456789999999888 766 32 334678999999875
No 182
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=97.53 E-value=0.00072 Score=46.04 Aligned_cols=54 Identities=11% Similarity=0.249 Sum_probs=39.8
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHH----HHCCCC-CCCEEEEEECCC
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMC----KSLNVK-VLPYFHFYRGAH 176 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~----~~~~i~-~~Pt~~~~~~g~ 176 (231)
++.|+.+||+.|+.....|++. ++.+..+|++++++.. +..+.. ++|++++ +|+
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~~-----~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~v~i--~g~ 60 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDKK-----GVDYEEIDVDGDPALREEMINRSGGRRTVPQIFI--GDV 60 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCccCEEEE--CCE
Confidence 5678999999999999888763 6777778888765443 445766 8998753 543
No 183
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=97.51 E-value=0.0008 Score=45.70 Aligned_cols=66 Identities=9% Similarity=0.190 Sum_probs=45.8
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCH---HHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHH
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK---PMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKI 192 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~---~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l 192 (231)
++.|..+||+.|...+..|.+. ++.+..+|++++. .+.+..+...+|.+++ +|+ .+ |+ .++|
T Consensus 3 v~lys~~~Cp~C~~ak~~L~~~-----~i~~~~~~v~~~~~~~~~~~~~g~~~vP~ifi--~g~-~i----gg---~~~l 67 (72)
T cd03029 3 VSLFTKPGCPFCARAKAALQEN-----GISYEEIPLGKDITGRSLRAVTGAMTVPQVFI--DGE-LI----GG---SDDL 67 (72)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEEECCCChhHHHHHHHhCCCCcCeEEE--CCE-EE----eC---HHHH
Confidence 5679999999999998888753 5667777777654 2444568899999743 543 22 22 4667
Q ss_pred HHHH
Q 026887 193 KEAI 196 (231)
Q Consensus 193 ~~~l 196 (231)
.++|
T Consensus 68 ~~~l 71 (72)
T cd03029 68 EKYF 71 (72)
T ss_pred HHHh
Confidence 7765
No 184
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=97.50 E-value=0.00045 Score=50.38 Aligned_cols=54 Identities=15% Similarity=0.211 Sum_probs=36.6
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCH-------HHHHHCCCCCCCEEEEEECCC
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK-------PMCKSLNVKVLPYFHFYRGAH 176 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~-------~l~~~~~i~~~Pt~~~~~~g~ 176 (231)
++.|..+||+.|++....|.+. ++.+-.+|+++.+ .+.+..+...+|.++ -+|+
T Consensus 10 Vvvysk~~Cp~C~~ak~~L~~~-----~i~~~~vdid~~~~~~~~~~~l~~~tg~~tvP~Vf--i~g~ 70 (99)
T TIGR02189 10 VVIFSRSSCCMCHVVKRLLLTL-----GVNPAVHEIDKEPAGKDIENALSRLGCSPAVPAVF--VGGK 70 (99)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCCEEEEcCCCccHHHHHHHHHHhcCCCCcCeEE--ECCE
Confidence 5569999999999999877765 4444456665442 233445778999974 3553
No 185
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=97.45 E-value=0.0007 Score=55.87 Aligned_cols=39 Identities=15% Similarity=0.359 Sum_probs=31.1
Q ss_pred CCeEEEEEEcCCChhhHhhhHHH---HHHHHHCC-CeEEEEEE
Q 026887 112 DRLVIVEFYGTWCASCRALFPKL---CRTAEEHP-EIVFLKVN 150 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l---~~l~~~~~-~v~~~~Vd 150 (231)
+++.||+|+.-.|++|..+.+.+ ..+.+.++ ++.++.+.
T Consensus 37 ~~~~VvEffdy~CphC~~~~~~l~~~~~~~~~~~~~v~~~~~~ 79 (207)
T PRK10954 37 GEPQVLEFFSFYCPHCYQFEEVYHVSDNVKKKLPEGTKMTKYH 79 (207)
T ss_pred CCCeEEEEeCCCCccHHHhcccccchHHHHHhCCCCCeEEEec
Confidence 46779999999999999999876 78888887 45555444
No 186
>PF07449 HyaE: Hydrogenase-1 expression protein HyaE; InterPro: IPR010893 This family contains bacterial hydrogenase-1 expression proteins approximately 120 residues long. This includes the Escherichia coli protein HyaE, and the homologous proteins HoxO of Ralstonia eutropha (Alcaligenes eutrophus) and HupG of Rhizobium leguminosarum. Deletion of the hoxO gene in R. eutropha led to complete loss of the uptake [NiFe] hydrogenase activity, suggesting that it has a critical role in hydrogenase assembly [].; PDB: 2QSI_B 2ES7_A 2GZP_A 2JZT_A 2HFD_A 2QGV_G.
Probab=97.44 E-value=0.00034 Score=51.72 Aligned_cols=81 Identities=14% Similarity=0.145 Sum_probs=57.4
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhH---HHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEEEEEECC
Q 026887 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFP---KLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGA 175 (231)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p---~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g 175 (231)
.++++..++. +...++ |++..|..|.+..- ++-|+.+.+++ +...-++-+....+..+|++..+|+++||++|
T Consensus 16 ~~~ld~~l~~--~~~~vl-f~~gDp~r~~E~~DvaVILPEL~~af~~~~~~avv~~~~e~~L~~r~gv~~~PaLvf~R~g 92 (107)
T PF07449_consen 16 ADTLDAFLAA--PGDAVL-FFAGDPARFPETADVAVILPELVKAFPGRFRGAVVARAAERALAARFGVRRWPALVFFRDG 92 (107)
T ss_dssp CCCHHHHHHC--CSCEEE-EESS-TTTSTTCCHHHHHHHHHHCTSTTSEEEEEEEHHHHHHHHHHHT-TSSSEEEEEETT
T ss_pred hhhHHHHHhC--CCcEEE-EECCCCCcCcccccceeEcHHHHHhhhCccceEEECchhHHHHHHHhCCccCCeEEEEECC
Confidence 5566666766 444544 55555555555443 67799999987 66777776677899999999999999999997
Q ss_pred CceEEEEec
Q 026887 176 HGQLESFSC 184 (231)
Q Consensus 176 ~~~~~~~~g 184 (231)
+ .+..+.|
T Consensus 93 ~-~lG~i~g 100 (107)
T PF07449_consen 93 R-YLGAIEG 100 (107)
T ss_dssp E-EEEEEES
T ss_pred E-EEEEecC
Confidence 6 6666655
No 187
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=97.44 E-value=0.0014 Score=47.52 Aligned_cols=63 Identities=16% Similarity=0.147 Sum_probs=42.8
Q ss_pred HHHHHHHHhcCCCeEEEEEE----cCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHH----HHHHCCCCCCCEEEE
Q 026887 101 QEFLEALSQAGDRLVIVEFY----GTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKP----MCKSLNVKVLPYFHF 171 (231)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~----a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~----l~~~~~i~~~Pt~~~ 171 (231)
+..++.+++ ..|+|+-. .+||++|+.....|.+. ++.+..+|++++++ +.+..+...+|.+++
T Consensus 3 ~~v~~~i~~---~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~~-----~i~~~~~di~~~~~~~~~l~~~tg~~tvP~vfi 73 (97)
T TIGR00365 3 ERIKEQIKE---NPVVLYMKGTPQFPQCGFSARAVQILKAC-----GVPFAYVNVLEDPEIRQGIKEYSNWPTIPQLYV 73 (97)
T ss_pred HHHHHHhcc---CCEEEEEccCCCCCCCchHHHHHHHHHHc-----CCCEEEEECCCCHHHHHHHHHHhCCCCCCEEEE
Confidence 344455544 45655544 38999999999888765 56677788877654 344567778999754
No 188
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=97.44 E-value=0.00036 Score=48.26 Aligned_cols=51 Identities=12% Similarity=0.363 Sum_probs=38.0
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHH----HHHCCCCCCCEEEE
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPM----CKSLNVKVLPYFHF 171 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l----~~~~~i~~~Pt~~~ 171 (231)
++.|+.+||+.|+.....+++. ++.+-.+|++++++. .+..+...+|++++
T Consensus 1 v~ly~~~~Cp~C~~a~~~L~~~-----~i~~~~~di~~~~~~~~~~~~~~g~~~vP~i~i 55 (79)
T TIGR02181 1 VTIYTKPYCPYCTRAKALLSSK-----GVTFTEIRVDGDPALRDEMMQRSGRRTVPQIFI 55 (79)
T ss_pred CEEEecCCChhHHHHHHHHHHc-----CCCcEEEEecCCHHHHHHHHHHhCCCCcCEEEE
Confidence 3568899999999999888754 566666777776544 44457889999743
No 189
>KOG3170 consensus Conserved phosducin-like protein [Signal transduction mechanisms]
Probab=97.31 E-value=0.0029 Score=51.56 Aligned_cols=105 Identities=15% Similarity=0.190 Sum_probs=78.6
Q ss_pred CCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEE
Q 026887 92 PNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (231)
Q Consensus 92 ~~~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~ 171 (231)
..+.+|...+-..+.-+...+-.|+|+.|...-+-|.-+...+++++.+||.++|+++-.+.+- ..|-=...||+++
T Consensus 91 G~V~~ISg~dyv~EVT~As~gvwVvvhLy~~gvp~c~Ll~~~l~~la~kfp~iKFVki~at~cI---pNYPe~nlPTl~V 167 (240)
T KOG3170|consen 91 GEVFPISGPDYVKEVTKASEGVWVVVHLYKQGVPLCALLSHHLQSLACKFPQIKFVKIPATTCI---PNYPESNLPTLLV 167 (240)
T ss_pred cceeeccchHHHHHHHhccCccEEEEEeeccccHHHHHHHHHHHHHhhcCCcceEEeccccccc---CCCcccCCCeEEE
Confidence 5577787666555555555588899999999999999999999999999999999999877541 2344478999999
Q ss_pred EECCCceEEE------EecCccCHHHHHHHHHHhh
Q 026887 172 YRGAHGQLES------FSCSLAKFQKIKEAIALHN 200 (231)
Q Consensus 172 ~~~g~~~~~~------~~g~~~~~~~l~~~l~~~~ 200 (231)
|..|. .... +.|...+.+++..++-+..
T Consensus 168 Y~~G~-lk~q~igll~lgG~n~t~ed~e~~L~qag 201 (240)
T KOG3170|consen 168 YHHGA-LKKQMIGLLELGGMNLTMEDVEDFLVQAG 201 (240)
T ss_pred eecch-HHhheehhhhhcCCcCCHHHHHHHHHhcc
Confidence 98875 2222 3333456777777776543
No 190
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=97.26 E-value=0.002 Score=45.13 Aligned_cols=51 Identities=16% Similarity=0.347 Sum_probs=37.8
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCH-----HHHHHC-CCCCCCEEEE
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK-----PMCKSL-NVKVLPYFHF 171 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~-----~l~~~~-~i~~~Pt~~~ 171 (231)
++.|..++|++|++....|.+. ++.+..+|+++++ +..++. |.+.+|++++
T Consensus 3 v~iyt~~~CPyC~~ak~~L~~~-----g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~I~i 59 (80)
T COG0695 3 VTIYTKPGCPYCKRAKRLLDRK-----GVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQIFI 59 (80)
T ss_pred EEEEECCCCchHHHHHHHHHHc-----CCCcEEEEecCCcHHHHHHHHHHhCCCCCcCEEEE
Confidence 5678899999999999888733 5666666666544 344555 7899999776
No 191
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=97.24 E-value=0.0071 Score=53.24 Aligned_cols=101 Identities=12% Similarity=0.093 Sum_probs=70.6
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHH------HHHHHH---CCCeEEEEEECCCCHHHHHHCCCCC
Q 026887 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKL------CRTAEE---HPEIVFLKVNFDENKPMCKSLNVKV 165 (231)
Q Consensus 95 ~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l------~~l~~~---~~~v~~~~Vd~d~~~~l~~~~~i~~ 165 (231)
+.-.+..+|.+++++ .+.++|+|+.+-- .-+.....+ -+++++ -+++.|..||..+...+++++|+..
T Consensus 36 Vi~LneKNfk~~lKk--yd~l~l~yh~p~~-~dk~~qkq~~m~E~~LELaAQVlE~~gigfg~VD~~Kd~klAKKLgv~E 112 (383)
T PF01216_consen 36 VIDLNEKNFKRALKK--YDVLVLYYHEPVE-SDKVSQKQFQMTELVLELAAQVLEDKGIGFGMVDSKKDAKLAKKLGVEE 112 (383)
T ss_dssp CEEE-TTTHHHHHHH---SEEEEEEE--ST-SSHHHHHHHHHHHHHHHHHHHHCGGCTEEEEEEETTTTHHHHHHHT--S
T ss_pred eEEcchhHHHHHHHh--hcEEEEEEecCCc-cCHHHHHHHHHHHHHHHHHHHhccccCcceEEeccHHHHHHHHhcCccc
Confidence 444567899999988 6888999998873 333333322 244433 3479999999999999999999999
Q ss_pred CCEEEEEECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 166 LPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 166 ~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
.+++.+|++| .+..|.| ..+++.|.++|-....
T Consensus 113 ~~SiyVfkd~--~~IEydG-~~saDtLVeFl~dl~e 145 (383)
T PF01216_consen 113 EGSIYVFKDG--EVIEYDG-ERSADTLVEFLLDLLE 145 (383)
T ss_dssp TTEEEEEETT--EEEEE-S---SHHHHHHHHHHHHS
T ss_pred cCcEEEEECC--cEEEecC-ccCHHHHHHHHHHhcc
Confidence 9999999995 5555665 4778999999998765
No 192
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=97.22 E-value=0.0024 Score=50.62 Aligned_cols=35 Identities=23% Similarity=0.518 Sum_probs=30.7
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEE
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVF 146 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~ 146 (231)
+++.|+.|+...|++|+.+.+.+.++.+++++ +.+
T Consensus 15 ~~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~~~~v~~ 50 (178)
T cd03019 15 GKPEVIEFFSYGCPHCYNFEPILEAWVKKLPKDVKF 50 (178)
T ss_pred CCcEEEEEECCCCcchhhhhHHHHHHHHhCCCCceE
Confidence 68899999999999999999999999888764 444
No 193
>cd03072 PDI_b'_ERp44 PDIb' family, ERp44 subfamily, second redox inactive TRX-like domain b'; ERp44 is an endoplasmic reticulum (ER)-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. Through the formation of reversible mixed disulfides, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. ERp44 also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol. Similar to PDI, the b' domain of ERp44 is likely involved in substrate recognition and may be the primary binding site.
Probab=97.21 E-value=0.004 Score=46.33 Aligned_cols=98 Identities=15% Similarity=-0.020 Sum_probs=68.3
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHH---CCC-eEEEEEECCCCHHHHHHCCCCC--CCEEEEEE
Q 026887 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEE---HPE-IVFLKVNFDENKPMCKSLNVKV--LPYFHFYR 173 (231)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~---~~~-v~~~~Vd~d~~~~l~~~~~i~~--~Pt~~~~~ 173 (231)
.++...+... +.+..+.|+ .=..-......+.+++++ +++ +.|+.+|.++.....+.||+.. +|.+.+..
T Consensus 6 ~e~~~~~~~~--~~~~~~l~f--~~~~~~~~~~~~~~vAk~~~~~kgki~Fv~~d~~~~~~~~~~fgl~~~~~P~i~i~~ 81 (111)
T cd03072 6 FENAEELTEE--GLPFLILFH--DKDDLESLKEFKQAVARQLISEKGAINFLTADGDKFRHPLLHLGKTPADLPVIAIDS 81 (111)
T ss_pred cccHHHHhcC--CCCeEEEEe--cchHHHHHHHHHHHHHHHHHhcCceEEEEEEechHhhhHHHHcCCCHhHCCEEEEEc
Confidence 4445555544 444444555 222336677888999999 886 9999999999888999999997 99999886
Q ss_pred CCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 174 GAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 174 ~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
..+........+..+.+.|.++++++..
T Consensus 82 ~~~~~Ky~~~~~~~t~~~i~~Fv~~~~~ 109 (111)
T cd03072 82 FRHMYLFPDFEDVYVPGKLKQFVLDLHS 109 (111)
T ss_pred chhcCcCCCCccccCHHHHHHHHHHHhc
Confidence 5331222202234667999999998865
No 194
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=97.13 E-value=0.0022 Score=44.98 Aligned_cols=57 Identities=23% Similarity=0.388 Sum_probs=42.6
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCC-CeEEEEEEC--CCC------------------------------HHHHHHCC
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHP-EIVFLKVNF--DEN------------------------------KPMCKSLN 162 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~-~v~~~~Vd~--d~~------------------------------~~l~~~~~ 162 (231)
|..|+...|++|..+.+.+.++.+..+ ++.+....+ ... ..+..++|
T Consensus 1 i~~f~d~~Cp~C~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g 80 (98)
T cd02972 1 IVEFFDPLCPYCYLFEPELEKLLYADDGGVRVVYRPFPLLGGMPPNSLAAARAALAAAAQGKFEALHEALADTALARALG 80 (98)
T ss_pred CeEEECCCCHhHHhhhHHHHHHHhhcCCcEEEEEeccccCCCCCcchHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHcC
Confidence 468999999999999999999875554 355554443 221 23567899
Q ss_pred CCCCCEEEEE
Q 026887 163 VKVLPYFHFY 172 (231)
Q Consensus 163 i~~~Pt~~~~ 172 (231)
+.++||+++.
T Consensus 81 ~~g~Pt~v~~ 90 (98)
T cd02972 81 VTGTPTFVVN 90 (98)
T ss_pred CCCCCEEEEC
Confidence 9999999985
No 195
>KOG2603 consensus Oligosaccharyltransferase, gamma subunit [Posttranslational modification, protein turnover, chaperones]
Probab=97.09 E-value=0.0047 Score=53.55 Aligned_cols=111 Identities=17% Similarity=0.279 Sum_probs=80.5
Q ss_pred CCCeEEeCChHHHHHHHHhc-CCCeEEEEEEcC----CChhhHhhhHHHHHHHHHCC---------CeEEEEEECCCCHH
Q 026887 91 APNMIDIHSTQEFLEALSQA-GDRLVIVEFYGT----WCASCRALFPKLCRTAEEHP---------EIVFLKVNFDENKP 156 (231)
Q Consensus 91 ~~~~~~i~s~~~~~~~l~~~-~~k~vlv~F~a~----wC~~C~~~~p~l~~l~~~~~---------~v~~~~Vd~d~~~~ 156 (231)
...++..+ .+.|...+... .+-.+++.|.|. .|.-|+.....+.-++..+. .+-|..||.|+.++
T Consensus 39 ~~~VI~~n-~d~~~~~v~~~prNys~IvmftA~~~~~~C~lC~~~~~Ef~iva~S~r~~~~~sn~tklFF~~Vd~~e~p~ 117 (331)
T KOG2603|consen 39 ESGVIRMN-DDKFSKFVRPPPRNYSLIVMFTALQPHSQCQLCLQAEEEFQIVANSWRYNSPFSNGTKLFFCMVDYDESPQ 117 (331)
T ss_pred CCCeEEec-CcchhhhccCCCCCeEEEEEccccCCCCcCchhhhHHHHHHHHHHHhhccCCCCCcceEEEEEEeccccHH
Confidence 44566555 56777777643 356688888886 69999999988888876531 26799999999999
Q ss_pred HHHHCCCCCCCEEEEEECCCceEE---EEec--CccCHHHHHHHHHHhhcC
Q 026887 157 MCKSLNVKVLPYFHFYRGAHGQLE---SFSC--SLAKFQKIKEAIALHNTD 202 (231)
Q Consensus 157 l~~~~~i~~~Pt~~~~~~g~~~~~---~~~g--~~~~~~~l~~~l~~~~~~ 202 (231)
+.++++++.+|++++|.+.++... .+.. .+...|++.++++...+.
T Consensus 118 ~Fq~l~ln~~P~l~~f~P~~~n~~~s~~~d~~~~g~~Ae~iaqfv~~~tkv 168 (331)
T KOG2603|consen 118 VFQQLNLNNVPHLVLFSPAKGNKKRSDQMDQQDLGFEAEQIAQFVADRTKV 168 (331)
T ss_pred HHHHhcccCCCeEEEeCCCccccccCccchhhhcchhHHHHHHHHHHhhhh
Confidence 999999999999999976543332 1111 123478888888876543
No 196
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=97.03 E-value=0.0041 Score=44.33 Aligned_cols=57 Identities=16% Similarity=0.213 Sum_probs=39.3
Q ss_pred CeEEEEEEc----CCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHH----HHHCCCCCCCEEEEEECCC
Q 026887 113 RLVIVEFYG----TWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPM----CKSLNVKVLPYFHFYRGAH 176 (231)
Q Consensus 113 k~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l----~~~~~i~~~Pt~~~~~~g~ 176 (231)
.+|+|.-.+ +||+.|+.....|.+. ++.+..+|+++++++ .+..+...+|++++ +|+
T Consensus 8 ~~vvvf~k~~~~~~~Cp~C~~ak~~L~~~-----~i~y~~idv~~~~~~~~~l~~~~g~~tvP~vfi--~g~ 72 (90)
T cd03028 8 NPVVLFMKGTPEEPRCGFSRKVVQILNQL-----GVDFGTFDILEDEEVRQGLKEYSNWPTFPQLYV--NGE 72 (90)
T ss_pred CCEEEEEcCCCCCCCCcHHHHHHHHHHHc-----CCCeEEEEcCCCHHHHHHHHHHhCCCCCCEEEE--CCE
Confidence 455554333 7999999999888765 466777777766543 44567889999733 543
No 197
>PRK10824 glutaredoxin-4; Provisional
Probab=96.98 E-value=0.0045 Score=46.42 Aligned_cols=66 Identities=14% Similarity=0.199 Sum_probs=41.6
Q ss_pred HHHHHHHHhcCCCeEEEEEEc----CCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHH----HHHCCCCCCCEEEEE
Q 026887 101 QEFLEALSQAGDRLVIVEFYG----TWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPM----CKSLNVKVLPYFHFY 172 (231)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a----~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l----~~~~~i~~~Pt~~~~ 172 (231)
+..++.+++ .+|+|.-.+ +||+.|++....|.+. ++.+..+|+++++++ .+.-+-..+|.+++
T Consensus 6 ~~v~~~I~~---~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-----~i~~~~idi~~d~~~~~~l~~~sg~~TVPQIFI- 76 (115)
T PRK10824 6 EKIQRQIAE---NPILLYMKGSPKLPSCGFSAQAVQALSAC-----GERFAYVDILQNPDIRAELPKYANWPTFPQLWV- 76 (115)
T ss_pred HHHHHHHhc---CCEEEEECCCCCCCCCchHHHHHHHHHHc-----CCCceEEEecCCHHHHHHHHHHhCCCCCCeEEE-
Confidence 344555544 455554443 6999999999888776 344445666666543 34446678888655
Q ss_pred ECCC
Q 026887 173 RGAH 176 (231)
Q Consensus 173 ~~g~ 176 (231)
+|+
T Consensus 77 -~G~ 79 (115)
T PRK10824 77 -DGE 79 (115)
T ss_pred -CCE
Confidence 654
No 198
>PF07912 ERp29_N: ERp29, N-terminal domain; InterPro: IPR012883 ERp29 (P52555 from SWISSPROT) is a ubiquitously expressed endoplasmic reticulum protein, and is involved in the processes of protein maturation and protein secretion in this organelle [, ]. The protein exists as a homodimer, with each monomer being composed of two domains. The N-terminal domain featured in this family is organised into a thioredoxin-like fold that resembles the a domain of human protein disulphide isomerase (PDI) []. However, this domain lacks the C-X-X-C motif required for the redox function of PDI; it is therefore thought that the function of ERp29 is similar to the chaperone function of PDI []. The N-terminal domain is exclusively responsible for the homodimerisation of the protein, without covalent linkages or additional contacts with other domains []. ; GO: 0009306 protein secretion, 0005788 endoplasmic reticulum lumen; PDB: 2QC7_B 1G7E_A 2C0G_B 1OVN_A 2C0F_A 2C0E_A 2C1Y_B.
Probab=96.86 E-value=0.05 Score=41.06 Aligned_cols=98 Identities=11% Similarity=0.233 Sum_probs=67.0
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHH-HH---CCCeEEEEEECC-----CCHHHHHHCCC--CCCCE
Q 026887 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTA-EE---HPEIVFLKVNFD-----ENKPMCKSLNV--KVLPY 168 (231)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~-~~---~~~v~~~~Vd~d-----~~~~l~~~~~i--~~~Pt 168 (231)
.-+|+..+.. .+.++|.|=... |--+-...+.+++ +. -+++-++.|-+. +|.+|+++|+| ..+|.
T Consensus 11 ~~tFdKvi~k--f~~~LVKFD~ay--PyGeKhd~F~~~A~e~~~~~~dLLvAeVGikDYGek~N~~Laery~i~ke~fPv 86 (126)
T PF07912_consen 11 ELTFDKVIPK--FKYVLVKFDVAY--PYGEKHDAFKKLAKEASASSDDLLVAEVGIKDYGEKENMELAERYKIDKEDFPV 86 (126)
T ss_dssp TTHHHHHGGG--SSEEEEEEEESS----CHHHHHHHHHHHHHHCC-SSEEEEEEECBSSSS-CCHHHHHHTT-SCCC-SE
T ss_pred ceehhheecc--CceEEEEEeccC--CCcchHHHHHHHHHHHhcCCCceEEEEeCcccccchhHHHHHHHhCCCcccCCE
Confidence 3478998877 689999997654 2222334555666 32 346888888875 57899999999 57899
Q ss_pred EEEEECCCceEEEEecC-ccCHHHHHHHHHHhhc
Q 026887 169 FHFYRGAHGQLESFSCS-LAKFQKIKEAIALHNT 201 (231)
Q Consensus 169 ~~~~~~g~~~~~~~~g~-~~~~~~l~~~l~~~~~ 201 (231)
+.+|..+......+... ..+.+.|+.++..+..
T Consensus 87 ~~LF~~~~~~pv~~p~~~~~t~~~l~~fvk~~t~ 120 (126)
T PF07912_consen 87 IYLFVGDKEEPVRYPFDGDVTADNLQRFVKSNTG 120 (126)
T ss_dssp EEEEESSTTSEEEE-TCS-S-HHHHHHHHHHTSS
T ss_pred EEEecCCCCCCccCCccCCccHHHHHHHHHhCCC
Confidence 99999766677777332 3677999999988743
No 199
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=96.82 E-value=0.022 Score=45.03 Aligned_cols=92 Identities=15% Similarity=0.152 Sum_probs=62.9
Q ss_pred HHhcCCCeEEEEEE-cCCChhhHhhhHHHHHHHHHCC--CeEEEEEECC---------------------CCHHHHHHCC
Q 026887 107 LSQAGDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFD---------------------ENKPMCKSLN 162 (231)
Q Consensus 107 l~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d---------------------~~~~l~~~~~ 162 (231)
|.+..+++||++|| .++++-|-...-.+.+...++. ++.++.|..| ...++++.||
T Consensus 25 Lsd~~Gk~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~~~F~~k~~L~f~LLSD~~~~v~~~yg 104 (157)
T COG1225 25 LSDLRGKPVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSHKKFAEKHGLTFPLLSDEDGEVAEAYG 104 (157)
T ss_pred hHHhcCCcEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHHHHHHHHhCCCceeeECCcHHHHHHhC
Confidence 55666889999999 7899999999988888877765 5888888775 3356888898
Q ss_pred CCC------------CCEEEEEECCCceEEEEecCc---cCHHHHHHHHHHh
Q 026887 163 VKV------------LPYFHFYRGAHGQLESFSCSL---AKFQKIKEAIALH 199 (231)
Q Consensus 163 i~~------------~Pt~~~~~~g~~~~~~~~g~~---~~~~~l~~~l~~~ 199 (231)
+.. .++.++++.++ .+....... ...+++.+.|++.
T Consensus 105 v~~~k~~~gk~~~~~~R~TfvId~dG-~I~~~~~~v~~~~h~~~vl~~l~~l 155 (157)
T COG1225 105 VWGEKKMYGKEYMGIERSTFVIDPDG-KIRYVWRKVKVKGHADEVLAALKKL 155 (157)
T ss_pred cccccccCccccccccceEEEECCCC-eEEEEecCCCCcccHHHHHHHHHHh
Confidence 754 35666665544 554443211 2344555555543
No 200
>cd03073 PDI_b'_ERp72_ERp57 PDIb' family, ERp72 and ERp57 subfamily, second redox inactive TRX-like domain b'; ERp72 and ER57 are involved in oxidative protein folding in the ER, like PDI. They exhibit both disulfide oxidase and reductase functions, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides and acting as isomerases to correct any non-native disulfide bonds. They also display chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp72 contains one additional redox-active TRX (a) domain at the N-terminus with a molecular structure of a"abb'a'. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoprotei
Probab=96.76 E-value=0.017 Score=42.98 Aligned_cols=85 Identities=8% Similarity=0.069 Sum_probs=60.2
Q ss_pred CeEEEEEEcC---CChhhHhhhHHHHHHHHHCC-C-eEEEEEECCCCHHHHHHCCCCC----CCEEEEEECCCceEEEEe
Q 026887 113 RLVIVEFYGT---WCASCRALFPKLCRTAEEHP-E-IVFLKVNFDENKPMCKSLNVKV----LPYFHFYRGAHGQLESFS 183 (231)
Q Consensus 113 k~vlv~F~a~---wC~~C~~~~p~l~~l~~~~~-~-v~~~~Vd~d~~~~l~~~~~i~~----~Pt~~~~~~g~~~~~~~~ 183 (231)
+.+++++-.+ .-..-......+.+++++++ + +.|+.+|.++.....+.||+.. +|++.++..++ ......
T Consensus 16 ~l~~~~~~~~~~~~~~~~~~~~~~~~~vAk~fk~gki~Fv~~D~~~~~~~l~~fgl~~~~~~~P~~~i~~~~~-~KY~~~ 94 (111)
T cd03073 16 PLVVAYYNVDYSKNPKGTNYWRNRVLKVAKDFPDRKLNFAVADKEDFSHELEEFGLDFSGGEKPVVAIRTAKG-KKYVME 94 (111)
T ss_pred CeEEEEEeccccCChhHHHHHHHHHHHHHHHCcCCeEEEEEEcHHHHHHHHHHcCCCcccCCCCEEEEEeCCC-CccCCC
Confidence 4455543332 23444567788999999998 4 9999999998888899999985 99999987532 222122
Q ss_pred cCcc-CHHHHHHHHHHh
Q 026887 184 CSLA-KFQKIKEAIALH 199 (231)
Q Consensus 184 g~~~-~~~~l~~~l~~~ 199 (231)
+ .. +.+.|.++++++
T Consensus 95 ~-~~~t~e~i~~F~~~f 110 (111)
T cd03073 95 E-EFSDVDALEEFLEDF 110 (111)
T ss_pred c-ccCCHHHHHHHHHHh
Confidence 2 24 678999998865
No 201
>PRK10638 glutaredoxin 3; Provisional
Probab=96.67 E-value=0.0078 Score=42.05 Aligned_cols=51 Identities=16% Similarity=0.285 Sum_probs=38.2
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHH----HHHHCCCCCCCEEEE
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKP----MCKSLNVKVLPYFHF 171 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~----l~~~~~i~~~Pt~~~ 171 (231)
++.|..+||+.|+.....+++. ++.+..+|++++++ +.+..+...+|++++
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~~-----gi~y~~~dv~~~~~~~~~l~~~~g~~~vP~i~~ 58 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNSK-----GVSFQEIPIDGDAAKREEMIKRSGRTTVPQIFI 58 (83)
T ss_pred EEEEECCCChhHHHHHHHHHHc-----CCCcEEEECCCCHHHHHHHHHHhCCCCcCEEEE
Confidence 5568889999999999888764 56667778876653 445567888998744
No 202
>COG1331 Highly conserved protein containing a thioredoxin domain [Posttranslational modification, protein turnover, chaperones]
Probab=96.54 E-value=0.0058 Score=58.19 Aligned_cols=76 Identities=16% Similarity=0.170 Sum_probs=58.5
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHH---HHHHHC-CCeEEEEEECCCCHHHHHHCC--------CCCC
Q 026887 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLC---RTAEEH-PEIVFLKVNFDENKPMCKSLN--------VKVL 166 (231)
Q Consensus 99 s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~---~l~~~~-~~v~~~~Vd~d~~~~l~~~~~--------i~~~ 166 (231)
+.+.|..+-+. +||++|.+...||.-|+.|...-. ++++-+ .+++-+|||-++-|++-+.|. --|+
T Consensus 32 ~~eAf~~A~~e--dkPIflSIGys~CHWChVM~~ESf~d~eiA~~lN~~FV~IKVDREERPDvD~~Ym~~~q~~tG~GGW 109 (667)
T COG1331 32 GEEAFAKAKEE--DKPILLSIGYSTCHWCHVMAHESFEDPEIAAILNENFVPVKVDREERPDVDSLYMNASQAITGQGGW 109 (667)
T ss_pred CHHHHHHHHHh--CCCEEEEeccccccchHHHhhhcCCCHHHHHHHHhCceeeeEChhhccCHHHHHHHHHHHhccCCCC
Confidence 36788877655 899999999999999999976532 555543 359999999999887655553 5689
Q ss_pred CEEEEEECCC
Q 026887 167 PYFHFYRGAH 176 (231)
Q Consensus 167 Pt~~~~~~g~ 176 (231)
|-.+|..+++
T Consensus 110 PLtVfLTPd~ 119 (667)
T COG1331 110 PLTVFLTPDG 119 (667)
T ss_pred ceeEEECCCC
Confidence 9777776654
No 203
>PF13848 Thioredoxin_6: Thioredoxin-like domain; PDB: 3EC3_B 3BOA_A 2B5E_A 1BJX_A 2K18_A 3UEM_A 3BJ5_A 2BJX_A 2R2J_A 2L4C_A ....
Probab=96.45 E-value=0.03 Score=44.36 Aligned_cols=68 Identities=18% Similarity=0.199 Sum_probs=55.4
Q ss_pred hhHHHHHHHHHCC-CeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 130 LFPKLCRTAEEHP-EIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 130 ~~p~l~~l~~~~~-~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
....+.++++.+. ++.|+.+. +.++++++++.. |++++|+++.+....+.|...+.+.|.++|.++.-
T Consensus 8 ~~~~f~~~A~~~~~~~~F~~~~---~~~~~~~~~~~~-p~i~~~k~~~~~~~~y~~~~~~~~~l~~fI~~~~~ 76 (184)
T PF13848_consen 8 LFEIFEEAAEKLKGDYQFGVTF---NEELAKKYGIKE-PTIVVYKKFDEKPVVYDGDKFTPEELKKFIKKNSF 76 (184)
T ss_dssp HHHHHHHHHHHHTTTSEEEEEE----HHHHHHCTCSS-SEEEEEECTTTSEEEESSSTTSHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHhCcCCcEEEEEc---HHHHHHHhCCCC-CcEEEeccCCCCceecccccCCHHHHHHHHHHhcc
Confidence 3456778888887 58888877 678999999999 99999999776778888864588999999998754
No 204
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=96.38 E-value=0.0067 Score=55.34 Aligned_cols=51 Identities=14% Similarity=0.328 Sum_probs=39.1
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHH---HHHH---------CCCCCCCEEEE
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKP---MCKS---------LNVKVLPYFHF 171 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~---l~~~---------~~i~~~Pt~~~ 171 (231)
|+.|..+||++|++.+..+.+. ++.+-.+|+++.+. +.++ .|.+.+|++++
T Consensus 4 V~vys~~~Cp~C~~aK~~L~~~-----gi~~~~idi~~~~~~~~~~~~~~~~~~~~~~g~~tvP~ifi 66 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWFGAN-----DIPFTQISLDDDVKRAEFYAEVNKNILLVEEHIRTVPQIFV 66 (410)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCCeEEEECCCChhHHHHHHHHhhccccccCCCCccCeEEE
Confidence 6679999999999998888764 67777888887653 2223 46789999865
No 205
>PTZ00062 glutaredoxin; Provisional
Probab=96.28 E-value=0.037 Score=45.74 Aligned_cols=57 Identities=12% Similarity=0.140 Sum_probs=38.3
Q ss_pred CeEEEEEE----cCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHH----HHCCCCCCCEEEEEECCC
Q 026887 113 RLVIVEFY----GTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMC----KSLNVKVLPYFHFYRGAH 176 (231)
Q Consensus 113 k~vlv~F~----a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~----~~~~i~~~Pt~~~~~~g~ 176 (231)
++|+|.-. .+||+.|+.....|.+. ++.+..+|+++.+++. +.-+...+|.+++ +|+
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~~~-----~i~y~~~DI~~d~~~~~~l~~~sg~~TvPqVfI--~G~ 177 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLNSS-----GVKYETYNIFEDPDLREELKVYSNWPTYPQLYV--NGE 177 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHHHc-----CCCEEEEEcCCCHHHHHHHHHHhCCCCCCeEEE--CCE
Confidence 45555444 37999999988888754 5677788888776543 3346667787664 543
No 206
>cd03066 PDI_b_Calsequestrin_middle PDIb family, Calsequestrin subfamily, Middle TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca
Probab=96.20 E-value=0.11 Score=37.60 Aligned_cols=97 Identities=16% Similarity=0.238 Sum_probs=65.2
Q ss_pred eEEeCChHHHHHHHH-hcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHC-CCeEEEEEECCCCHHHHHHCCCCCCCEEEE
Q 026887 94 MIDIHSTQEFLEALS-QAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH-PEIVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (231)
Q Consensus 94 ~~~i~s~~~~~~~l~-~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~ 171 (231)
+..|.+.++++..+. . +..++|-|+..--. .....+.+++..+ .++.|.. ....++.+.+++. .|++++
T Consensus 2 v~~i~~~~~~e~~~~~~--~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~---~~~~~~~~~~~~~-~~~i~l 72 (102)
T cd03066 2 VEIINSERELQAFENIE--DDIKLIGYFKSEDS---EHYKAFEEAAEEFHPYIKFFA---TFDSKVAKKLGLK-MNEVDF 72 (102)
T ss_pred ceEcCCHHHHHHHhccc--CCeEEEEEECCCCC---HHHHHHHHHHHhhhcCCEEEE---ECcHHHHHHcCCC-CCcEEE
Confidence 467888999999886 5 55666666655333 3445677888887 4577743 3345677788765 688999
Q ss_pred EECCCceEEEEecCccCHHHHHHHHHHh
Q 026887 172 YRGAHGQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 172 ~~~g~~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
+++.......|.++..+.+.|.+||..+
T Consensus 73 ~~~~~e~~~~y~~g~~~~~~l~~fi~~~ 100 (102)
T cd03066 73 YEPFMEEPVTIPDKPYSEEELVDFVEEH 100 (102)
T ss_pred eCCCCCCCcccCCCCCCHHHHHHHHHHh
Confidence 8763223344534456788999999764
No 207
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=96.16 E-value=0.042 Score=40.45 Aligned_cols=66 Identities=18% Similarity=0.252 Sum_probs=41.9
Q ss_pred HHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCH-HHH----HHCCCCCCCEEEEEECCC
Q 026887 102 EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK-PMC----KSLNVKVLPYFHFYRGAH 176 (231)
Q Consensus 102 ~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~-~l~----~~~~i~~~Pt~~~~~~g~ 176 (231)
.+...+.+ .+| |.|.-+||+.|+.+...|.+ .-.+..++.+|-+.+. ++. +--+.+.+|.+++ +|+
T Consensus 6 ~v~~~i~~---~~V-VifSKs~C~~c~~~k~ll~~---~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~vFI--~Gk 76 (104)
T KOG1752|consen 6 KVRKMISE---NPV-VIFSKSSCPYCHRAKELLSD---LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPNVFI--GGK 76 (104)
T ss_pred HHHHHhhc---CCE-EEEECCcCchHHHHHHHHHh---CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCEEEE--CCE
Confidence 45555544 334 44899999999998877776 1224667777766543 333 3345668998765 654
No 208
>cd02974 AhpF_NTD_N Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) family, N-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD forming two contiguous TRX-fold subdomain similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The N-terminal TRX-fold subdomain of AhpF NTD is redox inactive, but is proposed to contain an important residue that aids in the catalytic function of the redox-active CXXC motif contained in the C-terminal TRX-
Probab=95.67 E-value=0.29 Score=35.29 Aligned_cols=85 Identities=16% Similarity=0.119 Sum_probs=56.8
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceE
Q 026887 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQL 179 (231)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 179 (231)
.+++...++...+...++.|..+. ..|.++...++++++..+.+.+...+.++ ..|++.+.++|+..-
T Consensus 7 ~~qL~~~f~~l~~pV~l~~f~~~~-~~~~e~~~ll~e~a~lSdkI~~~~~~~~~-----------~~P~~~i~~~~~~~g 74 (94)
T cd02974 7 KQQLKAYLERLENPVELVASLDDS-EKSAELLELLEEIASLSDKITLEEDNDDE-----------RKPSFSINRPGEDTG 74 (94)
T ss_pred HHHHHHHHHhCCCCEEEEEEeCCC-cchHHHHHHHHHHHHhCCceEEEEecCCC-----------CCCEEEEecCCCccc
Confidence 456667776655555565666655 99999999999999887777665433322 479999987764233
Q ss_pred EEEecCccCHHHHHHHHH
Q 026887 180 ESFSCSLAKFQKIKEAIA 197 (231)
Q Consensus 180 ~~~~g~~~~~~~l~~~l~ 197 (231)
.+|.|.... .++..+|.
T Consensus 75 IrF~GiP~G-hEf~Slil 91 (94)
T cd02974 75 IRFAGIPMG-HEFTSLVL 91 (94)
T ss_pred EEEEecCCc-hhHHHHHH
Confidence 566664443 56666664
No 209
>cd03067 PDI_b_PDIR_N PDIb family, PDIR subfamily, N-terminal TRX-like b domain; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity. The TRX-like b domain of PDIR is critical for its chaperone activity.
Probab=95.66 E-value=0.15 Score=37.17 Aligned_cols=98 Identities=16% Similarity=0.266 Sum_probs=66.3
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEECCC--CHHHHHHCCCC----CCC
Q 026887 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNFDE--NKPMCKSLNVK----VLP 167 (231)
Q Consensus 95 ~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~--~~~l~~~~~i~----~~P 167 (231)
..|.+..+|...+.. ..-|+|.|..+--..-. ....+.++++...| -.++.|||.+ ...||+++.+. --|
T Consensus 4 e~i~d~KdfKKLLRT--r~NVLvLy~ks~k~a~~-~Lk~~~~~A~~vkG~gT~~~vdCgd~e~kKLCKKlKv~~~~kp~~ 80 (112)
T cd03067 4 EDISDHKDFKKLLRT--RNNVLVLYSKSAKSAEA-LLKLLSDVAQAVKGQGTIAWIDCGDSESRKLCKKLKVDPSSKPKP 80 (112)
T ss_pred ccccchHHHHHHHhh--cCcEEEEEecchhhHHH-HHHHHHHHHHHhcCceeEEEEecCChHHHHHHHHHccCCCCCCCc
Confidence 467888999999987 45677777665433333 33467788888777 6889999986 56899999999 556
Q ss_pred -EEEEEECCCceEEEEecCccCHHHHHHHHH
Q 026887 168 -YFHFYRGAHGQLESFSCSLAKFQKIKEAIA 197 (231)
Q Consensus 168 -t~~~~~~g~~~~~~~~g~~~~~~~l~~~l~ 197 (231)
++.-|++|. -...|. .......+.+|+.
T Consensus 81 ~~LkHYKdG~-fHkdYd-R~~t~kSmv~Flr 109 (112)
T cd03067 81 VELKHYKDGD-FHTEYN-RQLTFKSMVAFLR 109 (112)
T ss_pred chhhcccCCC-cccccc-chhhHHHHHHHhh
Confidence 466888876 222222 2244455666554
No 210
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=95.65 E-value=0.035 Score=44.64 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=21.7
Q ss_pred EEEcCCChhhHhhhHHHHHHHHHCCC
Q 026887 118 EFYGTWCASCRALFPKLCRTAEEHPE 143 (231)
Q Consensus 118 ~F~a~wC~~C~~~~p~l~~l~~~~~~ 143 (231)
+|..|.|+.|-..+|.+.++..++++
T Consensus 2 ~F~dPlc~~C~~~E~~l~kl~~~~~~ 27 (176)
T PF13743_consen 2 LFVDPLCSWCWGFEPELRKLKEEYGN 27 (176)
T ss_dssp EEE-TT-HHHHHHHHHHHHHHHHS-T
T ss_pred eeeCCCChHHHHhHHHHHHHHHHcCC
Confidence 68999999999999999999999985
No 211
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=95.30 E-value=0.12 Score=43.43 Aligned_cols=37 Identities=19% Similarity=0.282 Sum_probs=26.5
Q ss_pred HHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHHHh
Q 026887 156 PMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 156 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
.++.++||.++||+++ +|+ .+.| ..+.++|.+.|++.
T Consensus 206 ~~a~~~gv~gTPt~~v--~~~----~~~g-~~~~~~l~~~i~~~ 242 (244)
T COG1651 206 KLAQQLGVNGTPTFIV--NGK----LVPG-LPDLDELKAIIDEA 242 (244)
T ss_pred HHHHhcCCCcCCeEEE--CCe----eecC-CCCHHHHHHHHHHh
Confidence 4678899999999887 333 2333 35578898888865
No 212
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=95.13 E-value=0.13 Score=48.19 Aligned_cols=90 Identities=12% Similarity=-0.001 Sum_probs=62.4
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceE
Q 026887 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQL 179 (231)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 179 (231)
.+++...++.. .++|-+.++.+-|..|.++...++++++.-+.+.+...+.+ ...|++.+.++|+..-
T Consensus 7 ~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~~i~~~~~~~~-----------~~~p~~~~~~~~~~~~ 74 (517)
T PRK15317 7 KTQLKQYLELL-ERPIELVASLDDSEKSAELKELLEEIASLSDKITVEEDSLD-----------VRKPSFSITRPGEDTG 74 (517)
T ss_pred HHHHHHHHHhC-CCCEEEEEEeCCCchHHHHHHHHHHHHHhCCceEEEEccCC-----------CCCCEEEEEcCCccce
Confidence 45666777665 45555656666899999999999999998777766442211 3479999987765444
Q ss_pred EEEecCccCHHHHHHHHHHhhcC
Q 026887 180 ESFSCSLAKFQKIKEAIALHNTD 202 (231)
Q Consensus 180 ~~~~g~~~~~~~l~~~l~~~~~~ 202 (231)
.+|.|-... .++..+|+.....
T Consensus 75 i~f~g~P~g-~Ef~s~i~~i~~~ 96 (517)
T PRK15317 75 VRFAGIPMG-HEFTSLVLALLQV 96 (517)
T ss_pred EEEEecCcc-HHHHHHHHHHHHh
Confidence 667765443 7788888877553
No 213
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=94.94 E-value=0.053 Score=42.60 Aligned_cols=51 Identities=24% Similarity=0.434 Sum_probs=35.6
Q ss_pred CeEEEEEEcCCChhhHhh-hHHHHHHHHHCC--Ce-EEEEEECCCC---HHHHHHCCC
Q 026887 113 RLVIVEFYGTWCASCRAL-FPKLCRTAEEHP--EI-VFLKVNFDEN---KPMCKSLNV 163 (231)
Q Consensus 113 k~vlv~F~a~wC~~C~~~-~p~l~~l~~~~~--~v-~~~~Vd~d~~---~~l~~~~~i 163 (231)
..+|+.|.+.||+.|... .+.+.+..+++. ++ .++.|..|.. ...++++++
T Consensus 31 ~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~~~~~~~~~~~~ 88 (155)
T cd03013 31 KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPFVMKAWGKALGA 88 (155)
T ss_pred cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHHHHHHHHHhhCC
Confidence 445555558999999998 999988888775 56 5888887643 234445444
No 214
>cd03031 GRX_GRX_like Glutaredoxin (GRX) family, GRX-like domain containing protein subfamily; composed of uncharacterized eukaryotic proteins containing a GRX-like domain having only one conserved cysteine, aligning to the C-terminal cysteine of the CXXC motif of GRXs. This subfamily is predominantly composed of plant proteins. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins via a redox active CXXC motif using a similar dithiol mechanism employed by TRXs. GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. Proteins containing only the C-terminal cysteine are generally redox inactive.
Probab=94.88 E-value=0.16 Score=39.78 Aligned_cols=51 Identities=14% Similarity=0.180 Sum_probs=36.3
Q ss_pred EEEEEcC------CChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHH----HHHHCCC----CCCCEEEE
Q 026887 116 IVEFYGT------WCASCRALFPKLCRTAEEHPEIVFLKVNFDENKP----MCKSLNV----KVLPYFHF 171 (231)
Q Consensus 116 lv~F~a~------wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~----l~~~~~i----~~~Pt~~~ 171 (231)
|+.|+++ +|++|+..+..|+.. ++.|-.+|++.+++ |.+.++- ..+|.+++
T Consensus 2 VvlYttsl~giR~t~~~C~~ak~iL~~~-----~V~~~e~DVs~~~~~~~EL~~~~g~~~~~~tvPqVFI 66 (147)
T cd03031 2 VVLYTTSLRGVRKTFEDCNNVRAILESF-----RVKFDERDVSMDSGFREELRELLGAELKAVSLPRVFV 66 (147)
T ss_pred EEEEEcCCcCCCCcChhHHHHHHHHHHC-----CCcEEEEECCCCHHHHHHHHHHhCCCCCCCCCCEEEE
Confidence 3445566 999999999888765 57788889887654 4444454 67888665
No 215
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=94.72 E-value=0.3 Score=41.09 Aligned_cols=59 Identities=17% Similarity=0.314 Sum_probs=43.6
Q ss_pred CCCeEEeCChH--HHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC-eEEEEEEC
Q 026887 91 APNMIDIHSTQ--EFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE-IVFLKVNF 151 (231)
Q Consensus 91 ~~~~~~i~s~~--~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~ 151 (231)
.+++++++... .+-+..+. ++|.||+|.+-.||+-+.-...+++++++|.+ +.|+-|-+
T Consensus 81 ns~vv~l~g~~~~~ildf~~g--~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~adFl~VYI 142 (237)
T PF00837_consen 81 NSPVVTLDGQRSCRILDFAKG--NRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDVADFLIVYI 142 (237)
T ss_pred CCceEeeCCCcceeHHHhccC--CCCeEEEcccccchHHHHHHHHHHHHHHHhhhhhheehhhH
Confidence 34556555443 23333333 89999999999999999999999999999987 45665544
No 216
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=94.68 E-value=0.24 Score=46.43 Aligned_cols=107 Identities=12% Similarity=0.071 Sum_probs=68.6
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceE
Q 026887 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQL 179 (231)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~ 179 (231)
.+++.+.+... .++|-+.++.+-|..|.++...++++++.-+.+.+...+.+. ...|++.+.++|+..-
T Consensus 7 ~~~l~~~~~~~-~~~v~~~~~~~~~~~~~~~~~~~~~~~~~s~ki~~~~~~~~~----------~~~p~~~~~~~~~~~~ 75 (515)
T TIGR03140 7 LAQLKSYLASL-ENPVTLVLSAGSHEKSKELLELLDEIASLSDKISLTQNTADT----------LRKPSFTILRDGADTG 75 (515)
T ss_pred HHHHHHHHHhc-CCCEEEEEEeCCCchhHHHHHHHHHHHHhCCCeEEEEecCCc----------CCCCeEEEecCCcccc
Confidence 45666777665 445555555557999999999999999987777775444322 3569999887765344
Q ss_pred EEEecCccCHHHHHHHHHHhhcCCCCCCCCCCCCCCCccCCC
Q 026887 180 ESFSCSLAKFQKIKEAIALHNTDRCSIGPPKGVGDLSLEGIS 221 (231)
Q Consensus 180 ~~~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (231)
.+|.|.... .++..+|+...... ++....++...+.+.
T Consensus 76 i~f~g~P~g-~Ef~s~i~~i~~~~---~~~~~l~~~~~~~~~ 113 (515)
T TIGR03140 76 IRFAGIPGG-HEFTSLVLAILQVG---GHGPKLDEGIIDRIR 113 (515)
T ss_pred eEEEecCCc-HHHHHHHHHHHHhc---CCCCCCCHHHHHHHH
Confidence 666665443 77888888766533 333334444444333
No 217
>cd03069 PDI_b_ERp57 PDIb family, ERp57 subfamily, first redox inactive TRX-like domain b; ERp57 (or ERp60) exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp57 contains two redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. It shares the same domain arrangement of abb'a' as PDI, but lacks the C-terminal acid-rich region (c domain) that is present in PDI. ERp57 interacts with the lectin chaperones, calnexin and calreticulin, and specifically promotes the oxidative folding of glycoproteins. Similar to PDI, the b domain of ERp57 is likely involved in binding to substrates.
Probab=94.59 E-value=0.54 Score=34.19 Aligned_cols=94 Identities=18% Similarity=0.263 Sum_probs=61.9
Q ss_pred EEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHC-CCeEEEEEECCCCHHHHHHCCCCCCCEEEEEE
Q 026887 95 IDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH-PEIVFLKVNFDENKPMCKSLNVKVLPYFHFYR 173 (231)
Q Consensus 95 ~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~ 173 (231)
..+.+.++++..+.. ++.++|-|+..--. .....+.+++..+ .++.|... ....+.+.+++ .|++++|+
T Consensus 3 ~~i~s~~~l~~f~~~--~~~~Vvg~f~~~~~---~~~~~F~~vA~~~R~d~~F~~~---~~~~~~~~~~~--~~~ivl~~ 72 (104)
T cd03069 3 VELRTEAEFEKFLSD--DDASVVGFFEDEDS---KLLSEFLKAADTLRESFRFAHT---SDKQLLEKYGY--GEGVVLFR 72 (104)
T ss_pred cccCCHHHHHHHhcc--CCcEEEEEEcCCCc---hHHHHHHHHHHhhhhcCEEEEE---ChHHHHHhcCC--CCceEEEe
Confidence 467788899888865 56677777665433 3456777888888 46777543 34567788988 68888884
Q ss_pred CC------CceEEEEecCccCHHHHHHHHHHh
Q 026887 174 GA------HGQLESFSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 174 ~g------~~~~~~~~g~~~~~~~l~~~l~~~ 199 (231)
+. ......|.|. .+.+.|.+||..+
T Consensus 73 p~~~~~k~de~~~~y~g~-~~~~~l~~fi~~~ 103 (104)
T cd03069 73 PPRLSNKFEDSSVKFDGD-LDSSKIKKFIREN 103 (104)
T ss_pred chhhhcccCcccccccCc-CCHHHHHHHHHhh
Confidence 31 1122335553 4568899988754
No 218
>PRK09301 circadian clock protein KaiB; Provisional
Probab=94.30 E-value=0.25 Score=36.12 Aligned_cols=84 Identities=7% Similarity=0.052 Sum_probs=66.7
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHC-CC-eEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCH
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEH-PE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKF 189 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~-~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~ 189 (231)
+..++=.|.+..-+..+.....+.++.+++ ++ +.+--||+.+++++++.++|-.+||++=.-+ ....++.|...+.
T Consensus 5 ~~~~LrLyVag~tp~S~~ai~nL~~icE~~l~g~y~LeVIDv~~qPelAE~~~IvATPTLIK~~P--~P~rriiGDlsd~ 82 (103)
T PRK09301 5 KTYILKLYVAGNTPNSVRALKTLKNILETEFKGVYALKVIDVLKNPQLAEEDKILATPTLAKILP--PPVRKIIGDLSDR 82 (103)
T ss_pred ceEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCeEEecHHhhcCC--CCcceeecccccH
Confidence 567777888999999999888888887764 44 7888899999999999999999999775444 4778888887776
Q ss_pred HHHHHHHH
Q 026887 190 QKIKEAIA 197 (231)
Q Consensus 190 ~~l~~~l~ 197 (231)
+++..-++
T Consensus 83 ~kVL~~L~ 90 (103)
T PRK09301 83 EKVLIGLD 90 (103)
T ss_pred HHHHHhcC
Confidence 66654443
No 219
>TIGR02654 circ_KaiB circadian clock protein KaiB. Members of this protein family are the circadian clock protein KaiB of Cyanobacteria, encoded in the circadian clock gene cluster kaiABC. KaiB has homologs of unknown function in some Archaea and Proteobacteria, and has paralogs of unknown function in some Cyanobacteria. KaiB forms homodimers, homotetramers, and multimeric complexes with KaiA and/or KaiC.
Probab=93.89 E-value=0.29 Score=34.77 Aligned_cols=78 Identities=8% Similarity=0.065 Sum_probs=61.6
Q ss_pred CeEEEEEEcCCChhhHhhhHHHHHHHHHC-CC-eEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHH
Q 026887 113 RLVIVEFYGTWCASCRALFPKLCRTAEEH-PE-IVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQ 190 (231)
Q Consensus 113 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~-~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~ 190 (231)
..++=.|.+..-+..+.....+.++.+++ ++ +.+--||+.+++++++.++|-.+||++=.-+ ....++.|...+.+
T Consensus 3 ~~~LrLyvag~~p~S~~ai~nl~~i~e~~l~g~y~LeVIDv~~qP~lAE~~~IvATPtLIK~~P--~P~rriiGdls~~~ 80 (87)
T TIGR02654 3 TYVLKLYVAGNTPNSVRALKTLKNILETEFQGVYALKVIDVLKNPQLAEEDKILATPTLSKILP--PPVRKIIGDLSDRE 80 (87)
T ss_pred eEEEEEEEeCCCchHHHHHHHHHHHHHHhcCCceEEEEEEcccCHhHHhHCCEEEecHHhhcCC--CCcceeeccccchH
Confidence 45666778888888988888888887764 44 7888899999999999999999999775444 46777888766655
Q ss_pred HH
Q 026887 191 KI 192 (231)
Q Consensus 191 ~l 192 (231)
.+
T Consensus 81 ~v 82 (87)
T TIGR02654 81 RV 82 (87)
T ss_pred HH
Confidence 44
No 220
>cd02978 KaiB_like KaiB-like family; composed of the circadian clock proteins, KaiB and the N-terminal KaiB-like sensory domain of SasA. KaiB is an essential protein in maintaining circadian rhythm. It was originally discovered from the cyanobacterium Synechococcus as part of the circadian clock gene cluster, kaiABC. KaiB attenuates KaiA-enhanced KaiC autokinase activity by interacting with KaiA-KaiC complexes in a circadian fashion. KaiB is membrane-associated as well as cytosolic. The amount of membrane-associated protein peaks in the evening (at circadian time (CT) 12-16) while the cytosolic form peaks later (at CT 20). The rhythmic localization of KaiB may function in regulating the formation of Kai complexes. SasA is a sensory histidine kinase which associates with KaiC. Although it is not an essential oscillator component, it is important in enhancing kaiABC expression and is important in metabolic growth control under day/night cycle conditions. SasA contains an N-terminal sensor
Probab=93.37 E-value=0.38 Score=32.93 Aligned_cols=58 Identities=10% Similarity=0.066 Sum_probs=47.1
Q ss_pred EEEEEEcCCChhhHhhhHHHHHHHHHCC-C-eEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q 026887 115 VIVEFYGTWCASCRALFPKLCRTAEEHP-E-IVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (231)
Q Consensus 115 vlv~F~a~wC~~C~~~~p~l~~l~~~~~-~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~ 172 (231)
.+..|-+..-+..+.....+.++.+++. + +.+--||+.+++++++.++|-.+||++=.
T Consensus 3 ~L~Lyv~g~tp~S~~ai~nl~~i~e~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLvk~ 62 (72)
T cd02978 3 VLRLYVAGRTPKSERALQNLKRILEELLGGPYELEVIDVLKQPQLAEEDKIVATPTLVKV 62 (72)
T ss_pred EEEEEECCCCchHHHHHHHHHHHHHHhcCCcEEEEEEEcccCHhHHhhCCEEEechhhhc
Confidence 4555666666888888888888887764 3 88889999999999999999999997643
No 221
>PHA03075 glutaredoxin-like protein; Provisional
Probab=93.33 E-value=1 Score=33.68 Aligned_cols=83 Identities=19% Similarity=0.284 Sum_probs=52.6
Q ss_pred CeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECC---------------C----CHHHHHHCCCCCCCEEEEEE
Q 026887 113 RLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD---------------E----NKPMCKSLNVKVLPYFHFYR 173 (231)
Q Consensus 113 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d---------------~----~~~l~~~~~i~~~Pt~~~~~ 173 (231)
|.+++.|.-|.|+-|+.....+.++..+|. +++||+- + -..+.+.++ ..+=.++=|+
T Consensus 2 K~tLILfGKP~C~vCe~~s~~l~~ledeY~---ilrVNIlSfFsK~g~v~~lg~d~~y~lInn~~~~lg-ne~v~lfKyd 77 (123)
T PHA03075 2 KKTLILFGKPLCSVCESISEALKELEDEYD---ILRVNILSFFSKDGQVKVLGMDKGYTLINNFFKHLG-NEYVSLFKYD 77 (123)
T ss_pred CceEEEeCCcccHHHHHHHHHHHHhhcccc---EEEEEeeeeeccCCceEEEecccceehHHHHHHhhc-ccEEEEEEEc
Confidence 468999999999999999999988877764 4444431 1 134566666 3333444455
Q ss_pred CCCceEEE-----------EecCccCHHHHHHHHHHh
Q 026887 174 GAHGQLES-----------FSCSLAKFQKIKEAIALH 199 (231)
Q Consensus 174 ~g~~~~~~-----------~~g~~~~~~~l~~~l~~~ 199 (231)
++.+++.. +.....+.++|++.|++.
T Consensus 78 p~t~qmA~V~i~k~~~la~id~~~v~~d~L~~~Ie~a 114 (123)
T PHA03075 78 PETKQMAFVDISKFLVLAQIDKSFVDLDQLKEEIEKA 114 (123)
T ss_pred CCCCcEEEEehhHeeeeeecchhhcCHHHHHHHHHhC
Confidence 44445432 222445677788877753
No 222
>cd03068 PDI_b_ERp72 PDIb family, ERp72 subfamily, first redox inactive TRX-like domain b; ERp72 exhibits both disulfide oxidase and reductase functions like PDI, by catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER and acting as isomerases to correct any non-native disulfide bonds. It also displays chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. ERp72 contains three redox-active TRX (a) domains and two redox inactive TRX-like (b) domains. Its molecular structure is a"abb'a', compared to the abb'a' structure of PDI. ERp72 associates with several ER chaperones and folding factors to form complexes in the ER that bind nascent proteins. Similar to PDI, the b domain of ERp72 is likely involved in binding to substrates.
Probab=92.04 E-value=3.6 Score=30.08 Aligned_cols=98 Identities=12% Similarity=0.162 Sum_probs=59.6
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHC-CCeEEEEEECCCCHHHHHHCCCCCCCEEEEE
Q 026887 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEH-PEIVFLKVNFDENKPMCKSLNVKVLPYFHFY 172 (231)
Q Consensus 94 ~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~-~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~ 172 (231)
+..|.+.++++..+... ++.++|-|+..--. .....+.+++..+ .++.|... .+..+.+++++. -|.+++|
T Consensus 2 v~~i~s~~ele~f~~~~-~~~~VVG~F~~~~~---~~~~~F~~vA~~~Rdd~~F~~t---~~~~~~~~~~~~-~~~vvl~ 73 (107)
T cd03068 2 SKQLQTLKQVQEFLRDG-DDVIIIGVFSGEED---PAYQLYQDAANSLREDYKFHHT---FDSEIFKSLKVS-PGQLVVF 73 (107)
T ss_pred ceEcCCHHHHHHHHhcC-CCEEEEEEECCCCC---HHHHHHHHHHHhcccCCEEEEE---ChHHHHHhcCCC-CCceEEE
Confidence 46788999999988662 25666666655433 3455677888888 45777543 345677888876 4667777
Q ss_pred ECCC------ceEEEEecC-ccCHHHHHHHHHHh
Q 026887 173 RGAH------GQLESFSCS-LAKFQKIKEAIALH 199 (231)
Q Consensus 173 ~~g~------~~~~~~~g~-~~~~~~l~~~l~~~ 199 (231)
++.. .....|.+. ....+.|..+|.++
T Consensus 74 rp~~~~~k~e~~~~~~~~~~~~~~~~~~~f~~~~ 107 (107)
T cd03068 74 QPEKFQSKYEPKSHVLNKKDSTSEDELKDFFKEH 107 (107)
T ss_pred CcHHHhhhcCcceeeeeccccchHHHHHHHHhcC
Confidence 4321 122334443 23323488888653
No 223
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=90.96 E-value=3.4 Score=27.68 Aligned_cols=75 Identities=19% Similarity=0.149 Sum_probs=41.9
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHH
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEA 195 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~ 195 (231)
+..|+.+.|+.|+..+-.+.+..- .+.+..+|.....++ +.-+...+|++..=..|++.+ + .+-..|.++
T Consensus 2 i~Ly~~~~~p~c~kv~~~L~~~gi---~y~~~~~~~~~~~~~-~~~~~~~vP~l~~~~~~~~~~--l----~eS~~I~~y 71 (77)
T cd03040 2 ITLYQYKTCPFCCKVRAFLDYHGI---PYEVVEVNPVSRKEI-KWSSYKKVPILRVESGGDGQQ--L----VDSSVIIST 71 (77)
T ss_pred EEEEEcCCCHHHHHHHHHHHHCCC---ceEEEECCchhHHHH-HHhCCCccCEEEECCCCCccE--E----EcHHHHHHH
Confidence 345778999999998866654421 133333333222333 334566899987532222221 2 223678888
Q ss_pred HHHhh
Q 026887 196 IALHN 200 (231)
Q Consensus 196 l~~~~ 200 (231)
|++++
T Consensus 72 L~~~~ 76 (77)
T cd03040 72 LKTYL 76 (77)
T ss_pred HHHHc
Confidence 88764
No 224
>PF09673 TrbC_Ftype: Type-F conjugative transfer system pilin assembly protein; InterPro: IPR019106 This entry represents TrbC, a protein that is an essential component of the F-type conjugative pilus assembly system (aka type 4 secretion system) for the transfer of plasmid DNA [, ]. The N-terminal portion of these proteins is heterogeneous.
Probab=90.74 E-value=2.3 Score=31.65 Aligned_cols=71 Identities=15% Similarity=0.161 Sum_probs=40.8
Q ss_pred hHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEEC
Q 026887 100 TQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRG 174 (231)
Q Consensus 100 ~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~ 174 (231)
.+.+.+.+++..+.-+.+-|-.--=+.=+.....+.++..+.+.. .++.-+|.+.++|+|+.+||+++-++
T Consensus 10 ~~~L~~l~~~a~~~~~~~V~RG~~~g~~~~t~~~~~~l~~~~~~~----~~v~IdP~~F~~y~I~~VPa~V~~~~ 80 (113)
T PF09673_consen 10 DASLRNLLKQAERAGVVVVFRGFPDGSFKPTAKAIQELLRKDDPC----PGVQIDPRLFRQYNITAVPAFVVVKD 80 (113)
T ss_pred HHHHHHHHHHHHhCCcEEEEECCCCCCHHHHHHHHHHHhhccCCC----cceeEChhHHhhCCceEcCEEEEEcC
Confidence 345555555543333444444433333344444445555444333 33333588999999999999999877
No 225
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=90.20 E-value=2.5 Score=32.73 Aligned_cols=76 Identities=12% Similarity=0.105 Sum_probs=53.5
Q ss_pred CeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCC----CCCEEEEEECCCceEEEEecCccC
Q 026887 113 RLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVK----VLPYFHFYRGAHGQLESFSCSLAK 188 (231)
Q Consensus 113 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~----~~Pt~~~~~~g~~~~~~~~g~~~~ 188 (231)
..-++.|+.|.|+=|......++. .++++-.+..++...+.++++|. +=-|.++ +|. -++ +...
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk~-----~Gf~Vk~~~~~d~~alK~~~gIp~e~~SCHT~VI--~Gy-~vE----GHVP 92 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMKA-----NGFEVKVVETDDFLALKRRLGIPYEMQSCHTAVI--NGY-YVE----GHVP 92 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHHh-----CCcEEEEeecCcHHHHHHhcCCChhhccccEEEE--cCE-EEe----ccCC
Confidence 456788999999999987766652 37888888888888888888876 2334433 544 333 3345
Q ss_pred HHHHHHHHHHhh
Q 026887 189 FQKIKEAIALHN 200 (231)
Q Consensus 189 ~~~l~~~l~~~~ 200 (231)
.+.|..++++--
T Consensus 93 a~aI~~ll~~~p 104 (149)
T COG3019 93 AEAIARLLAEKP 104 (149)
T ss_pred HHHHHHHHhCCC
Confidence 688888887543
No 226
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=89.50 E-value=0.28 Score=36.31 Aligned_cols=52 Identities=19% Similarity=0.285 Sum_probs=32.5
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC----HHHHHHCCCCCCCEEEEEE
Q 026887 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN----KPMCKSLNVKVLPYFHFYR 173 (231)
Q Consensus 117 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~----~~l~~~~~i~~~Pt~~~~~ 173 (231)
..|+.++|+.|+.....+++- ++.|-.+|+.++ .++.+-++..+.|.--+++
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~~~~~~~el~~~~~~~~~~~~~l~~ 57 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDEH-----GVDYTAIDIVEEPPSKEELKKWLEKSGLPLKKFFN 57 (111)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCceEEecccCCcccHHHHHHHHHHcCCCHHHHHh
Confidence 468899999999988777653 666777776544 2333333444455444443
No 227
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=89.40 E-value=3.4 Score=35.30 Aligned_cols=94 Identities=17% Similarity=0.317 Sum_probs=63.6
Q ss_pred hcCCCeEEEEEEcCCChh-hHhhhHHHHHHHHHC---CCe----EEEEEECCCC--------------------------
Q 026887 109 QAGDRLVIVEFYGTWCAS-CRALFPKLCRTAEEH---PEI----VFLKVNFDEN-------------------------- 154 (231)
Q Consensus 109 ~~~~k~vlv~F~a~wC~~-C~~~~p~l~~l~~~~---~~v----~~~~Vd~d~~-------------------------- 154 (231)
+..+|.++++|.=+.||. |=.....+.++.++. +++ .|+.||-+..
T Consensus 136 df~Gkw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~~~~~~~PlFIsvDPeRD~~~~~~eY~~eF~pkllGLTGT~eqv 215 (280)
T KOG2792|consen 136 DFLGKWSLIYFGFTHCPDICPDELEKMSAVVDEIEAKPGLPPVPLFISVDPERDSVEVVAEYVSEFHPKLLGLTGTTEQV 215 (280)
T ss_pred ccccceEEEEecccCCCCcChHHHHHHHHHHHHHhccCCCCccceEEEeCcccCCHHHHHHHHHhcChhhhcccCCHHHH
Confidence 445899999999999974 776666665554432 232 4777776321
Q ss_pred HHHHHHCCCCCCC-------------EEEEE-ECCCceEEEEecCccCHHHHHHHHHHhhcC
Q 026887 155 KPMCKSLNVKVLP-------------YFHFY-RGAHGQLESFSCSLAKFQKIKEAIALHNTD 202 (231)
Q Consensus 155 ~~l~~~~~i~~~P-------------t~~~~-~~g~~~~~~~~g~~~~~~~l~~~l~~~~~~ 202 (231)
.++|++|.|.--+ ++++| .+-+|+...+.|...+.+++.+.|.++...
T Consensus 216 k~vak~yRVYfs~gp~d~~~DYlVDHSi~mYLidPeg~Fvd~~GrN~~~~~~~~~I~~~v~~ 277 (280)
T KOG2792|consen 216 KQVAKKYRVYFSTGPKDEDQDYLVDHSIFMYLIDPEGEFVDYYGRNYDADELADSILKHVAS 277 (280)
T ss_pred HHHHHHhEEeeccCCCCCCCCeeeeeeEEEEEECCCcceehhhcccCCHHHHHHHHHHHHHh
Confidence 3467888766332 34433 355568888888888899999999988753
No 228
>COG3634 AhpF Alkyl hydroperoxide reductase, large subunit [Posttranslational modification, protein turnover, chaperones]
Probab=88.89 E-value=2.8 Score=37.67 Aligned_cols=74 Identities=12% Similarity=0.255 Sum_probs=61.2
Q ss_pred HHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCC
Q 026887 101 QEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAH 176 (231)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~ 176 (231)
++.-+.++...+..-+=-|++-.|..|-..-..+.-++--.|++.-..||..-.++-.+.-+|.++||+++ ||+
T Consensus 105 q~vieqik~i~g~~~FETy~SltC~nCPDVVQALN~msvlNp~I~H~~IdGa~Fq~Evear~IMaVPtvfl--nGe 178 (520)
T COG3634 105 QDVIEQIKAIDGDFHFETYFSLTCHNCPDVVQALNLMSVLNPRIKHTAIDGALFQDEVEARNIMAVPTVFL--NGE 178 (520)
T ss_pred HHHHHHHHhcCCceeEEEEEEeeccCChHHHHHHHHHHhcCCCceeEEecchhhHhHHHhccceecceEEE--cch
Confidence 44555566666788888899999999999888888888888999999999988777778889999999765 665
No 229
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=87.29 E-value=0.6 Score=33.92 Aligned_cols=32 Identities=13% Similarity=0.214 Sum_probs=23.9
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCC
Q 026887 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE 153 (231)
Q Consensus 117 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~ 153 (231)
..|+.++|+.|+.....+++. ++.|-.+|+.+
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~~-----~i~~~~idi~~ 33 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEEH-----GIEYEFIDYLK 33 (105)
T ss_pred EEEECCCCHHHHHHHHHHHHc-----CCCcEEEeecc
Confidence 468999999999988777653 55566666654
No 230
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=86.25 E-value=3.4 Score=27.35 Aligned_cols=52 Identities=10% Similarity=0.080 Sum_probs=35.3
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCC-CHHHHHHCCCCCCCEEEE
Q 026887 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE-NKPMCKSLNVKVLPYFHF 171 (231)
Q Consensus 117 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~-~~~l~~~~~i~~~Pt~~~ 171 (231)
+.|+..||+.|++..-.+++..- .+.+..+|... .+++.+......+|++..
T Consensus 2 ~ly~~~~~p~~~rv~~~L~~~gl---~~e~~~v~~~~~~~~~~~~np~~~vP~L~~ 54 (71)
T cd03060 2 ILYSFRRCPYAMRARMALLLAGI---TVELREVELKNKPAEMLAASPKGTVPVLVL 54 (71)
T ss_pred EEEecCCCcHHHHHHHHHHHcCC---CcEEEEeCCCCCCHHHHHHCCCCCCCEEEE
Confidence 35778999999998766654422 35666666543 356666667778999854
No 231
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=86.15 E-value=3.4 Score=35.16 Aligned_cols=69 Identities=13% Similarity=0.095 Sum_probs=45.5
Q ss_pred CeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCC-CCCCCEEEE
Q 026887 93 NMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLN-VKVLPYFHF 171 (231)
Q Consensus 93 ~~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~-i~~~Pt~~~ 171 (231)
.+..+.+.+ +. ..+|+.+++..+.||+.|....=.+...-.+|.++.+....-+. .+ --.+||++|
T Consensus 45 ~~~kvsn~d-----~~-~~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfGn~~l~~~~S~~-------~d~~pn~Ptl~F 111 (249)
T PF06053_consen 45 NFFKVSNQD-----LA-PNGKPEVIFIGWEGCPYCAAESWALYIALSRFGNFSLEYHYSDP-------YDNYPNTPTLIF 111 (249)
T ss_pred ceeeecCcc-----cC-CCCeeEEEEEecccCccchhhHHHHHHHHHhcCCeeeEEeecCc-------ccCCCCCCeEEE
Confidence 556665532 22 34899999999999999999876666667778877333222222 11 246888887
Q ss_pred EEC
Q 026887 172 YRG 174 (231)
Q Consensus 172 ~~~ 174 (231)
...
T Consensus 112 ~~~ 114 (249)
T PF06053_consen 112 NNY 114 (249)
T ss_pred ecC
Confidence 643
No 232
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=85.59 E-value=7.5 Score=26.17 Aligned_cols=71 Identities=11% Similarity=0.045 Sum_probs=40.7
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC----HHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHH
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN----KPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQK 191 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~----~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~ 191 (231)
+..++.++|+.|++..-.+.+. ++.+-.++++.. +++.+.-.-..+|+++. ++++.. . .+-..
T Consensus 2 ~~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~~~~~~~~~~~p~~~vP~l~~--~~~~~~--l----~es~~ 68 (77)
T cd03041 2 LELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGSPKRDKFLEKGGKVQVPYLVD--PNTGVQ--M----FESAD 68 (77)
T ss_pred ceEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCChHHHHHHHHhCCCCcccEEEe--CCCCeE--E----EcHHH
Confidence 3456778999999877666654 433333455432 34444445568998753 222222 1 22367
Q ss_pred HHHHHHHh
Q 026887 192 IKEAIALH 199 (231)
Q Consensus 192 l~~~l~~~ 199 (231)
|.++|++.
T Consensus 69 I~~yL~~~ 76 (77)
T cd03041 69 IVKYLFKT 76 (77)
T ss_pred HHHHHHHh
Confidence 77777653
No 233
>TIGR02742 TrbC_Ftype type-F conjugative transfer system pilin assembly protein TrbC. This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Probab=85.45 E-value=6.3 Score=30.13 Aligned_cols=44 Identities=11% Similarity=0.209 Sum_probs=31.2
Q ss_pred CCHHHHHHCCCCCCCEEEEEECCC----------ceEEEEecCccCHHHHHHHHHHhh
Q 026887 153 ENKPMCKSLNVKVLPYFHFYRGAH----------GQLESFSCSLAKFQKIKEAIALHN 200 (231)
Q Consensus 153 ~~~~l~~~~~i~~~Pt~~~~~~g~----------~~~~~~~g~~~~~~~l~~~l~~~~ 200 (231)
-+|.+.++|+|+.+|++++.+++. .....+.|. .+ |...|++..
T Consensus 59 IdP~lF~~f~I~~VPa~V~~~~~~~c~~~~~~~~~~~d~v~Gd-vs---l~~ALe~ia 112 (130)
T TIGR02742 59 IDPQWFKQFDITAVPAFVVVKDGLACLPEQPCPESDYDVVYGN-VS---LKGALEKMA 112 (130)
T ss_pred EChHHHhhcCceEcCEEEEECCCCcccccCCCCCCCeeEEEec-cc---HHHHHHHHH
Confidence 358899999999999999998752 135556664 33 566666554
No 234
>KOG2507 consensus Ubiquitin regulatory protein UBXD2, contains UAS and UBX domains [General function prediction only]
Probab=84.26 E-value=12 Score=34.16 Aligned_cols=88 Identities=10% Similarity=0.046 Sum_probs=57.7
Q ss_pred CCeEEEEEEcCCChhhHhhhH-HH-HHHHHH-C-CCeEEEEEECCC--CHHHHHHCCCCCCCEEEEEECCCceEEEEecC
Q 026887 112 DRLVIVEFYGTWCASCRALFP-KL-CRTAEE-H-PEIVFLKVNFDE--NKPMCKSLNVKVLPYFHFYRGAHGQLESFSCS 185 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p-~l-~~l~~~-~-~~v~~~~Vd~d~--~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~ 185 (231)
++-++|.|-+..-.....|.. .| ...... . ..++.++|+... ..+++.-|-+-.+|.++|+...+..++.+.|.
T Consensus 18 kkalfVVyI~gddE~s~kl~r~~w~d~~vs~~ls~~fVaIkiqags~aa~qFs~IYp~v~vPs~ffIg~sGtpLevitg~ 97 (506)
T KOG2507|consen 18 KKALFVVYISGDDEESDKLNRLTWTDASVSDSLSKYFVAIKIQAGSVAATQFSAIYPYVSVPSIFFIGFSGTPLEVITGF 97 (506)
T ss_pred CCeEEEEEEecCchHhhHHhhccchhhhhhhhhhcceEEEEeccCchhhhhhhhhcccccccceeeecCCCceeEEeecc
Confidence 455666666666555555552 22 222222 2 236667777653 35678889999999999997766678888775
Q ss_pred ccCHHHHHHHHHHhh
Q 026887 186 LAKFQKIKEAIALHN 200 (231)
Q Consensus 186 ~~~~~~l~~~l~~~~ 200 (231)
...++|..-|+|..
T Consensus 98 -v~adeL~~~i~Kv~ 111 (506)
T KOG2507|consen 98 -VTADELASSIEKVW 111 (506)
T ss_pred -ccHHHHHHHHHHHH
Confidence 44789988888753
No 235
>KOG2640 consensus Thioredoxin [Function unknown]
Probab=84.06 E-value=0.61 Score=40.68 Aligned_cols=96 Identities=16% Similarity=0.226 Sum_probs=67.2
Q ss_pred HHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEEC-CCCHHHHHHCCCCCCCEEEEEECCCceEEE
Q 026887 103 FLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNF-DENKPMCKSLNVKVLPYFHFYRGAHGQLES 181 (231)
Q Consensus 103 ~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~-d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~ 181 (231)
..+++-.++..++=+.||+.||+--+..+|.+.-....++.+....++- ...+....+|++.+.|++.+... .-..+
T Consensus 67 l~~~ih~n~~~~vs~~fy~s~C~fsr~~~~~fd~~~sl~~~i~h~~vee~~~lpsv~s~~~~~~~ps~~~~n~--t~~~~ 144 (319)
T KOG2640|consen 67 LLDAIHGNKNDYVSLLFYASWCPFSRAVRPEFDVRSSLFSSIQHFAVEESQALPSVFSSYGIHSEPSNLMLNQ--TCPAS 144 (319)
T ss_pred HHHhhccccCCcccccchhcccCcccccCcccchhhhhccccccccHHHHhhcccchhccccccCCcceeecc--ccchh
Confidence 3334433346789999999999999999999987777777544443321 23367789999999999998744 24444
Q ss_pred EecCccCHHHHHHHHHHhhc
Q 026887 182 FSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 182 ~~g~~~~~~~l~~~l~~~~~ 201 (231)
+.| ..+...|.++..+...
T Consensus 145 ~~~-~r~l~sLv~fy~~i~~ 163 (319)
T KOG2640|consen 145 YRG-ERDLASLVNFYTEITP 163 (319)
T ss_pred hcc-cccHHHHHHHHHhhcc
Confidence 554 3566778887777654
No 236
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=84.01 E-value=2.1 Score=31.73 Aligned_cols=33 Identities=15% Similarity=0.266 Sum_probs=25.7
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC
Q 026887 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN 154 (231)
Q Consensus 117 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~ 154 (231)
..|+.++|+.|+.....+++ .++.+-.+|+.+.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-----~~i~~~~idi~~~ 34 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-----NGIEYQFIDIGED 34 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-----cCCceEEEecCCC
Confidence 35889999999998877776 2667777787654
No 237
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=83.65 E-value=2 Score=32.78 Aligned_cols=34 Identities=26% Similarity=0.367 Sum_probs=24.7
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN 154 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~ 154 (231)
+..|+.++|+.|+.....+++- ++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~C~ka~~~L~~~-----gi~~~~idi~~~ 35 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLEEH-----DIPFTERNIFSS 35 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCcEEeeccCC
Confidence 4578899999999988666543 566666666544
No 238
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=83.60 E-value=2.9 Score=34.98 Aligned_cols=42 Identities=12% Similarity=0.298 Sum_probs=31.1
Q ss_pred HHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHHHhhcCC
Q 026887 156 PMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDR 203 (231)
Q Consensus 156 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~~~ 203 (231)
..+++.||+++|||+| +++-. +.| ....+.+...|++..+..
T Consensus 175 ~~A~e~gI~gVP~fv~--d~~~~---V~G-aq~~~v~~~al~~~~~~~ 216 (225)
T COG2761 175 AAAQEMGIRGVPTFVF--DGKYA---VSG-AQPYDVLEDALRQLLAEK 216 (225)
T ss_pred HHHHHCCCccCceEEE--cCcEe---ecC-CCCHHHHHHHHHHHHhcc
Confidence 4678999999999998 43322 233 355799999999988754
No 239
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=81.83 E-value=1.9 Score=31.58 Aligned_cols=41 Identities=5% Similarity=0.067 Sum_probs=27.9
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC-------HHHHHHCC
Q 026887 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN-------KPMCKSLN 162 (231)
Q Consensus 117 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~-------~~l~~~~~ 162 (231)
..|+.++|+.|+.....+++- ++.+-.+|+.+. ..+.+++|
T Consensus 2 ~iy~~~~C~~crka~~~L~~~-----~i~~~~~di~~~p~s~~eL~~~l~~~g 49 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEAR-----GVAYTFHDYRKDGLDAATLERWLAKVG 49 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHHc-----CCCeEEEecccCCCCHHHHHHHHHHhC
Confidence 568999999999988776644 555556666543 34555555
No 240
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=81.43 E-value=4.6 Score=32.22 Aligned_cols=54 Identities=19% Similarity=0.338 Sum_probs=36.5
Q ss_pred hcCCCeEEEEEEcCCC-hhhHhhhHHHHHHHHHC----CCeEEEEEECCC---CHHHHHHCC
Q 026887 109 QAGDRLVIVEFYGTWC-ASCRALFPKLCRTAEEH----PEIVFLKVNFDE---NKPMCKSLN 162 (231)
Q Consensus 109 ~~~~k~vlv~F~a~wC-~~C~~~~p~l~~l~~~~----~~v~~~~Vd~d~---~~~l~~~~~ 162 (231)
+.++|+++|.|.=+.| ..|-.+...+.++.+++ .++.++.|.+|- .++..++|.
T Consensus 49 ~~~Gk~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp~~L~~Y~ 110 (174)
T PF02630_consen 49 DLKGKWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTPEVLKKYA 110 (174)
T ss_dssp GGTTSEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-HHHHHHHH
T ss_pred HhCCCeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCHHHHHHHH
Confidence 3458999999999999 67888877777665543 357777777763 355555443
No 241
>PF06764 DUF1223: Protein of unknown function (DUF1223); InterPro: IPR010634 This family consists of several hypothetical proteins of around 250 residues in length, which are found in both plants and bacteria. The function of this family is unknown.; PDB: 2AXO_A.
Probab=81.04 E-value=30 Score=28.53 Aligned_cols=81 Identities=14% Similarity=0.191 Sum_probs=51.1
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC------------------HHHHHHCCCCCCCEEEEEECCCc
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN------------------KPMCKSLNVKVLPYFHFYRGAHG 177 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~------------------~~l~~~~~i~~~Pt~~~~~~g~~ 177 (231)
|=.|.+.-|..|=.....|.+++++ +++..+...+|-- ...+++++..++=|--++-||..
T Consensus 2 VELFTSQGCsSCPpAD~~L~~l~~~-~~Vi~LafHVDYWDylGWkD~fa~~~~t~RQr~Y~~~~~~~~vYTPQ~vVnG~~ 80 (202)
T PF06764_consen 2 VELFTSQGCSSCPPADRLLSELAAR-PDVIALAFHVDYWDYLGWKDPFASPEFTQRQRAYARRFGLRSVYTPQVVVNGRE 80 (202)
T ss_dssp EEEEE-TT-TT-HHHHHHHHHHHHH-TSSEEEEEE-STT-SSSS--TT--HHHHHHHHHHHHHTT-S---SSEEEETTTE
T ss_pred eeEecCCCCCCCcHHHHHHHHhhcC-CCEEEEEecCCcccCCCCCCccCChhHHHHHHHHHHHhCCCCCcCCeEEECCee
Confidence 3357888999999999999999999 5888877777521 34567777776543334448762
Q ss_pred eEEEEecCccCHHHHHHHHHHhhcC
Q 026887 178 QLESFSCSLAKFQKIKEAIALHNTD 202 (231)
Q Consensus 178 ~~~~~~g~~~~~~~l~~~l~~~~~~ 202 (231)
. ..| .+.+.+...|++....
T Consensus 81 ~---~~g--~~~~~~~~ai~~~~~~ 100 (202)
T PF06764_consen 81 H---RVG--SDRAAVEAAIQAARAR 100 (202)
T ss_dssp E---EET--T-HHHHHHHHHHHHHT
T ss_pred e---eec--cCHHHHHHHHHHhhcc
Confidence 2 233 5668899999988765
No 242
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=80.87 E-value=23 Score=29.00 Aligned_cols=88 Identities=14% Similarity=0.170 Sum_probs=59.0
Q ss_pred CCCeEEEEEE-cCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC----------------------------CHHHHH
Q 026887 111 GDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE----------------------------NKPMCK 159 (231)
Q Consensus 111 ~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~----------------------------~~~l~~ 159 (231)
.+|.+++.|| ++.-.-|-.....+.+...++. |++++.+.+|. +.++++
T Consensus 32 ~gkw~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~fsH~aW~~~~~~~~gi~~i~~PmiaD~~~~vs~ 111 (194)
T COG0450 32 YGKWVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSVFSHKAWKATIREAGGIGKIKFPMIADPKGEIAR 111 (194)
T ss_pred cCcEEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcHHHHHHHHhcHHhcCCccceecceEEcCchhHHH
Confidence 3588888888 7788888887777777777765 57787777753 356888
Q ss_pred HCCCCCCC------EEEEEECCCceEEEEec----CccCHHHHHHHHHHh
Q 026887 160 SLNVKVLP------YFHFYRGAHGQLESFSC----SLAKFQKIKEAIALH 199 (231)
Q Consensus 160 ~~~i~~~P------t~~~~~~g~~~~~~~~g----~~~~~~~l~~~l~~~ 199 (231)
.||+.... .+++++. +|.+..+.. .+.+.+++...|+..
T Consensus 112 ~ygvl~~~~g~a~R~~FIIDp-~g~ir~~~v~~~~iGRn~dEilR~idAl 160 (194)
T COG0450 112 AYGVLHPEEGLALRGTFIIDP-DGVIRHILVNPLTIGRNVDEILRVIDAL 160 (194)
T ss_pred HcCCcccCCCcceeEEEEECC-CCeEEEEEEecCCCCcCHHHHHHHHHHH
Confidence 88877432 3344443 445543322 357788888888754
No 243
>COG4545 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=80.70 E-value=5 Score=27.71 Aligned_cols=54 Identities=19% Similarity=0.198 Sum_probs=35.0
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC--------------HH--HHHHCCCCCCCEEEEEECCC
Q 026887 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN--------------KP--MCKSLNVKVLPYFHFYRGAH 176 (231)
Q Consensus 117 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~--------------~~--l~~~~~i~~~Pt~~~~~~g~ 176 (231)
+.|++.-||.|......++++ ++.+=.|+++.. ++ -.+..|--|+|++.. .+|+
T Consensus 5 ~lfgsn~Cpdca~a~eyl~rl-----~v~yd~VeIt~Sm~NlKrFl~lRDs~~~Fd~vk~~gyiGIPall~-~d~~ 74 (85)
T COG4545 5 KLFGSNLCPDCAPAVEYLERL-----NVDYDFVEITESMANLKRFLHLRDSRPEFDEVKSNGYIGIPALLT-DDGK 74 (85)
T ss_pred eeeccccCcchHHHHHHHHHc-----CCCceeeehhhhhhhHHHHHhhhccchhHHhhhhcCcccceEEEe-CCCc
Confidence 569999999998877666665 233333444322 22 245677889999886 3444
No 244
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=79.73 E-value=2.3 Score=26.98 Aligned_cols=51 Identities=10% Similarity=0.035 Sum_probs=32.8
Q ss_pred EEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCH--HHHHHCCCCCCCEEEE
Q 026887 118 EFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENK--PMCKSLNVKVLPYFHF 171 (231)
Q Consensus 118 ~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~--~l~~~~~i~~~Pt~~~ 171 (231)
.|+.++|+.|....-.++...- .+....++.+... ++.+......+|++..
T Consensus 3 ly~~~~~~~~~~~~~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~~~~~P~l~~ 55 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEKGL---PYELVPVDLGEGEQEEFLALNPLGKVPVLED 55 (71)
T ss_pred EEeCCCCccHHHHHHHHHHcCC---CcEEEEeCCCCCCCHHHHhcCCCCCCCEEEE
Confidence 5778899999988776665522 2444555544322 3555667788998764
No 245
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=79.22 E-value=6.6 Score=25.79 Aligned_cols=51 Identities=10% Similarity=0.096 Sum_probs=29.7
Q ss_pred EEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEE
Q 026887 118 EFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHF 171 (231)
Q Consensus 118 ~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~ 171 (231)
.++.++|+.|++.+-.+....- .+..+.++..+.....+..+-..+|++..
T Consensus 3 Ly~~~~~p~~~rvr~~L~~~gl---~~~~~~~~~~~~~~~~~~~~~~~vP~L~~ 53 (71)
T cd03037 3 LYIYEHCPFCVKARMIAGLKNI---PVEQIILQNDDEATPIRMIGAKQVPILEK 53 (71)
T ss_pred eEecCCCcHhHHHHHHHHHcCC---CeEEEECCCCchHHHHHhcCCCccCEEEe
Confidence 4678899999987766654421 23344444433333334445567898743
No 246
>cd03051 GST_N_GTT2_like GST_N family, Saccharomyces cerevisiae GTT2-like subfamily; composed of predominantly uncharacterized proteins with similarity to the S. cerevisiae GST protein, GTT2. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. GTT2, a homodimer, exhibits GST activity with standard substrates. Strains with deleted GTT2 genes are viable but exhibit increased sensitivity to heat shock.
Probab=79.06 E-value=5.2 Score=26.13 Aligned_cols=52 Identities=8% Similarity=0.105 Sum_probs=34.3
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECC----CCHHHHHHCCCCCCCEEEE
Q 026887 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD----ENKPMCKSLNVKVLPYFHF 171 (231)
Q Consensus 117 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d----~~~~l~~~~~i~~~Pt~~~ 171 (231)
..|+.++|+.|++..-.+.+..- .+....++.. ..+++.+......+|++..
T Consensus 2 ~Ly~~~~s~~~~~~~~~L~~~~l---~~~~~~v~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (74)
T cd03051 2 KLYDSPTAPNPRRVRIFLAEKGI---DVPLVTVDLAAGEQRSPEFLAKNPAGTVPVLEL 57 (74)
T ss_pred EEEeCCCCcchHHHHHHHHHcCC---CceEEEeecccCccCCHHHHhhCCCCCCCEEEe
Confidence 35778899999998877665522 2445555543 2345666666778999865
No 247
>COG5429 Uncharacterized secreted protein [Function unknown]
Probab=78.57 E-value=10 Score=32.04 Aligned_cols=89 Identities=17% Similarity=0.209 Sum_probs=62.1
Q ss_pred CeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECC------------------CCHHHHHHCCCCCCCEEEEEEC
Q 026887 113 RLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD------------------ENKPMCKSLNVKVLPYFHFYRG 174 (231)
Q Consensus 113 k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d------------------~~~~l~~~~~i~~~Pt~~~~~~ 174 (231)
+-|+=.|.+.-|..|--....+.+++++ +++.-+..++| ......+.|+-++++|--.+-+
T Consensus 42 ~~VVELfTSQGCsSCPPAd~~l~k~a~~-~~vlALsyhVdYWdYlGWkDtlar~enTeRQ~aY~~a~g~~~vyTPQavvn 120 (261)
T COG5429 42 LGVVELFTSQGCSSCPPADANLAKLADD-PGVLALSYHVDYWDYLGWKDTLARKENTERQRAYARAFGARGVYTPQAVVN 120 (261)
T ss_pred ceEEEEeecCCcCCCChHHHHHHHhccC-CCEEEEEEeecccccCCccccccchhhhHHHHHHHHhhccCCCCCchheee
Confidence 3455567788899999999999999876 45554444442 1245778899999988877778
Q ss_pred CCceEEEEecCccCHHHHHHHHHHhhcCCCCCC
Q 026887 175 AHGQLESFSCSLAKFQKIKEAIALHNTDRCSIG 207 (231)
Q Consensus 175 g~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~~ 207 (231)
|... .. +.+...|.+.|+..........
T Consensus 121 Gr~~---~~--Gad~~~i~~~i~a~~~~g~gl~ 148 (261)
T COG5429 121 GRVH---AN--GADPGAIEDAIAAMARRGAGLE 148 (261)
T ss_pred chhh---hc--CCCHHHHHHHHHHhhccccccc
Confidence 6521 22 3778899999998766554433
No 248
>cd03074 PDI_b'_Calsequestrin_C Protein Disulfide Isomerase (PDIb') family, Calsequestrin subfamily, C-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin
Probab=78.35 E-value=25 Score=26.09 Aligned_cols=99 Identities=13% Similarity=0.159 Sum_probs=69.5
Q ss_pred HHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC---CeEEEEEECCCCHHHH----HHCCCC-CCCEEEEE
Q 026887 101 QEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP---EIVFLKVNFDENKPMC----KSLNVK-VLPYFHFY 172 (231)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~---~v~~~~Vd~d~~~~l~----~~~~i~-~~Pt~~~~ 172 (231)
+++.+.-.+.-+...++-|--+--+.-.++.+.+.++++++. ++.|+.||-|+.+-+. +-|+|. .=|.+=+.
T Consensus 9 ~~m~e~wedd~~g~~IvAFaee~dpdG~eFl~ilk~vA~~nt~np~LsiIWIDPD~FPllv~yWektF~IDl~~PqIGVV 88 (120)
T cd03074 9 ENMFETWEDDLDGIHIVAFAEEEDPDGYEFLEILKEVARDNTDNPDLSIIWIDPDDFPLLVPYWEKTFGIDLFRPQIGVV 88 (120)
T ss_pred HHHHHhhhcccCCceEEEEeccCCccHHHHHHHHHHHHHhcCcCCCceEEEECCccCchhhHHHHhhcCcccCCCceeeE
Confidence 334444444346788999999999999999999999999864 5999999999987654 456665 24877666
Q ss_pred EC--CCceEEEEec--CccCHHHHHHHHHHh
Q 026887 173 RG--AHGQLESFSC--SLAKFQKIKEAIALH 199 (231)
Q Consensus 173 ~~--g~~~~~~~~g--~~~~~~~l~~~l~~~ 199 (231)
+- .++.-..+.+ ...+.++|.++|+..
T Consensus 89 ~vtdadSvW~~m~~~~d~~t~~~Le~WiedV 119 (120)
T cd03074 89 NVTDADSVWMEMDDDEDLPTAEELEDWIEDV 119 (120)
T ss_pred ecccccceeEecccccccCcHHHHHHHHHhh
Confidence 42 2223333322 336788999998864
No 249
>PF07689 KaiB: KaiB domain; InterPro: IPR011649 The cyanobacterial clock proteins KaiA and KaiB are proposed as regulators of the circadian rhythm in cyanobacteria. Mutations in both proteins have been reported to alter or abolish circadian rhythmicity. KaiB adopts an alpha-beta meander motif and is found to be a dimer [].; GO: 0048511 rhythmic process; PDB: 1T4Y_A 1T4Z_A 1R5P_B 2QKE_F 1VGL_A 1WWJ_D.
Probab=76.53 E-value=0.72 Score=32.38 Aligned_cols=52 Identities=13% Similarity=0.127 Sum_probs=40.9
Q ss_pred EEcCCChhhHhhhHHHHHHHHHC-C-CeEEEEEECCCCHHHHHHCCCCCCCEEE
Q 026887 119 FYGTWCASCRALFPKLCRTAEEH-P-EIVFLKVNFDENKPMCKSLNVKVLPYFH 170 (231)
Q Consensus 119 F~a~wC~~C~~~~p~l~~l~~~~-~-~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~ 170 (231)
|-+..-+........+..+.+.+ + .+.+--||+.+++++++.++|-.+||++
T Consensus 3 yV~g~~~~s~~a~~~l~~l~~~~l~~~~~LeVIDv~~~P~lAe~~~ivAtPtLi 56 (82)
T PF07689_consen 3 YVAGRTPSSERAIENLRRLCEEYLGGRYELEVIDVLEQPELAEEDRIVATPTLI 56 (82)
T ss_dssp EESSBHHHHHHHHHHHHHHHHCHCTTTEEEEEEETTTSHSHHTTTEEECHHHHH
T ss_pred EECCCChHHHHHHHHHHHHHHhhCCCcEEEEEEEcccCHhHHhHCCeeecceEe
Confidence 33444456667777788887763 3 3899999999999999999999999976
No 250
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=76.41 E-value=12 Score=24.45 Aligned_cols=51 Identities=10% Similarity=0.077 Sum_probs=32.6
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC-HHHHHHCCCCCCCEEE
Q 026887 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN-KPMCKSLNVKVLPYFH 170 (231)
Q Consensus 117 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~-~~l~~~~~i~~~Pt~~ 170 (231)
..|+.++|+.|++..-.+++..- ++....+|.... +++.+......+|++.
T Consensus 2 ~ly~~~~~~~~~~v~~~l~~~gi---~~~~~~v~~~~~~~~~~~~~p~~~vP~l~ 53 (73)
T cd03059 2 TLYSGPDDVYSHRVRIVLAEKGV---SVEIIDVDPDNPPEDLAELNPYGTVPTLV 53 (73)
T ss_pred EEEECCCChhHHHHHHHHHHcCC---ccEEEEcCCCCCCHHHHhhCCCCCCCEEE
Confidence 45788999999998766654422 244445555433 4555555667899764
No 251
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=75.52 E-value=6.6 Score=33.08 Aligned_cols=47 Identities=19% Similarity=0.296 Sum_probs=38.7
Q ss_pred HHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHH-----CCCeEEEEEECC
Q 026887 106 ALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEE-----HPEIVFLKVNFD 152 (231)
Q Consensus 106 ~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~-----~~~v~~~~Vd~d 152 (231)
.+.++.++.+||-+-..+|..|......|+.|..+ +++|.|+.||--
T Consensus 20 pm~~~~G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~ 71 (238)
T PF04592_consen 20 PMLNSLGHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQ 71 (238)
T ss_pred HhhhcCCcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCC
Confidence 34556689999999999999999999999877654 557999999964
No 252
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=75.40 E-value=5.8 Score=29.31 Aligned_cols=34 Identities=26% Similarity=0.334 Sum_probs=24.6
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN 154 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~ 154 (231)
+..|+.++|+.|+.....+++- ++.+-.+|+.+.
T Consensus 2 i~iY~~~~C~~c~ka~~~L~~~-----gi~~~~idi~~~ 35 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLEEH-----QIPFEERNLFKQ 35 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHHHC-----CCceEEEecCCC
Confidence 4467889999999988777653 556666666544
No 253
>PRK12559 transcriptional regulator Spx; Provisional
Probab=75.34 E-value=4.8 Score=30.69 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=23.1
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCC
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE 153 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~ 153 (231)
+..|+.++|+.|+.....+++- ++.+-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----gi~~~~~di~~ 34 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLEEN-----QIDYTEKNIVS 34 (131)
T ss_pred EEEEeCCCChHHHHHHHHHHHc-----CCCeEEEEeeC
Confidence 5678899999999987666543 55555555543
No 254
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=75.06 E-value=7.7 Score=30.69 Aligned_cols=37 Identities=16% Similarity=0.345 Sum_probs=26.5
Q ss_pred CHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHH
Q 026887 154 NKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAI 196 (231)
Q Consensus 154 ~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l 196 (231)
+...+.++||.|+||+++ +|+ ..+.|. ...+.|++.|
T Consensus 156 ~~~~a~~~gv~GvP~~vv--~g~---~~~~G~-~~~~~l~~~l 192 (193)
T PF01323_consen 156 DTAEARQLGVFGVPTFVV--NGK---YRFFGA-DRLDELEDAL 192 (193)
T ss_dssp HHHHHHHTTCSSSSEEEE--TTT---EEEESC-SSHHHHHHHH
T ss_pred HHHHHHHcCCcccCEEEE--CCE---EEEECC-CCHHHHHHHh
Confidence 355678999999999999 544 445553 5567777766
No 255
>COG3531 Predicted protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=73.73 E-value=7.7 Score=31.86 Aligned_cols=45 Identities=9% Similarity=0.130 Sum_probs=32.9
Q ss_pred HHHHHHCCCCCCCEEEEEECCCceEEEEecC--ccCHHHHHHHHHHhhc
Q 026887 155 KPMCKSLNVKVLPYFHFYRGAHGQLESFSCS--LAKFQKIKEAIALHNT 201 (231)
Q Consensus 155 ~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~--~~~~~~l~~~l~~~~~ 201 (231)
..+++++++.++||+++-+||+ ...+..+ ..+++.+...+++.+.
T Consensus 164 r~l~~rlg~~GfPTl~le~ng~--~~~l~~g~y~~~~~~~~arl~~~~~ 210 (212)
T COG3531 164 RRLMQRLGAAGFPTLALERNGT--MYVLGTGAYFGSPDAWLARLAQRLA 210 (212)
T ss_pred HHHHHHhccCCCCeeeeeeCCc--eEeccCCcccCCcHHHHHHHHHHHh
Confidence 3478999999999999998754 4444433 4566888888877653
No 256
>PF08806 Sep15_SelM: Sep15/SelM redox domain; InterPro: IPR014912 Sep15 and SelM are eukaryotic selenoproteins that have a thioredoxin-like domain and a surface accessible active site redox motif []. This suggests that they function as thiol-disulphide isomerases involved in disulphide bond formation in the endoplasmic reticulum []. ; PDB: 2A4H_A 2A2P_A.
Probab=73.39 E-value=5.5 Score=27.60 Aligned_cols=36 Identities=14% Similarity=0.128 Sum_probs=24.7
Q ss_pred CCCEEEEEECCCceEEEEecCccCHHHHHHHHHHhh
Q 026887 165 VLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHN 200 (231)
Q Consensus 165 ~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~ 200 (231)
..|++++++..+.+++++.-...+.++|.++|++..
T Consensus 41 ~~P~L~l~d~~g~~~E~i~i~~w~~d~i~efL~~kg 76 (78)
T PF08806_consen 41 APPELVLLDEDGEEVERINIEKWKTDEIEEFLNEKG 76 (78)
T ss_dssp ---EEEEE-SSS--SEEEE-SSSSHCHHHHHHHHHT
T ss_pred CCCEEEEEcCCCCEEEEEEcccCCHHHHHHHHHHhC
Confidence 468999998666577888888889999999998764
No 257
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=71.23 E-value=14 Score=24.16 Aligned_cols=51 Identities=18% Similarity=0.185 Sum_probs=33.9
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCC----CHHHHHHCCCCCCCEEE
Q 026887 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE----NKPMCKSLNVKVLPYFH 170 (231)
Q Consensus 117 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~----~~~l~~~~~i~~~Pt~~ 170 (231)
..|+.++|+.|++..-.+++..- ++....+|..+ .+++.+......+|++.
T Consensus 2 ~Ly~~~~~~~~~~v~~~l~~~gi---~~e~~~i~~~~~~~~~~~~~~~~p~~~vP~l~ 56 (74)
T cd03045 2 DLYYLPGSPPCRAVLLTAKALGL---ELNLKEVNLMKGEHLKPEFLKLNPQHTVPTLV 56 (74)
T ss_pred EEEeCCCCCcHHHHHHHHHHcCC---CCEEEEecCccCCcCCHHHHhhCcCCCCCEEE
Confidence 35788999999987766665422 35555666532 25666666667899985
No 258
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=70.96 E-value=6.6 Score=31.08 Aligned_cols=34 Identities=24% Similarity=0.392 Sum_probs=28.5
Q ss_pred EEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEE
Q 026887 115 VIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLK 148 (231)
Q Consensus 115 vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~ 148 (231)
.|..|+..-||.|-...+.+.++.++++++.+..
T Consensus 1 ~i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~ 34 (193)
T PF01323_consen 1 TIEFFFDFICPWCYLASPRLRKLRAEYPDVEIEW 34 (193)
T ss_dssp EEEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred CEEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEE
Confidence 3678899999999999999999999997654443
No 259
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=69.71 E-value=54 Score=25.95 Aligned_cols=47 Identities=11% Similarity=0.108 Sum_probs=35.0
Q ss_pred HHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC
Q 026887 106 ALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE 153 (231)
Q Consensus 106 ~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~ 153 (231)
.+.+.+++.++|-=.|+-|+---++ ..++.|.++|. ++.++.+-|.+
T Consensus 19 ~l~~~~GkVlLIVNtASkCGfTpQY-egLe~Ly~ky~~~Gf~VLgFPcNQ 67 (162)
T COG0386 19 SLSDYKGKVLLIVNTASKCGFTPQY-EGLEALYKKYKDKGFEVLGFPCNQ 67 (162)
T ss_pred cHHHhCCcEEEEEEcccccCCcHhH-HHHHHHHHHHhhCCcEEEeccccc
Confidence 3556779999999999999977643 36677777776 47887777753
No 260
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=67.13 E-value=9.8 Score=29.02 Aligned_cols=33 Identities=18% Similarity=0.318 Sum_probs=22.9
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCC
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE 153 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~ 153 (231)
+..|+.++|+.|+.....+++- ++.|-.+|+.+
T Consensus 2 i~iY~~~~C~~crkA~~~L~~~-----~i~~~~~d~~~ 34 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTWLNAH-----QLSYKEQNLGK 34 (132)
T ss_pred EEEEeCCCCHHHHHHHHHHHHc-----CCCeEEEECCC
Confidence 4467889999999977665542 55666666653
No 261
>PF13417 GST_N_3: Glutathione S-transferase, N-terminal domain; PDB: 3ERG_B 3IBH_A 3ERF_A 3UBL_A 3UBK_A 3IR4_A 3M8N_B 2R4V_A 2PER_A 2R5G_A ....
Probab=65.81 E-value=36 Score=22.53 Aligned_cols=70 Identities=10% Similarity=0.006 Sum_probs=47.4
Q ss_pred EEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC-HHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHH
Q 026887 119 FYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN-KPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIA 197 (231)
Q Consensus 119 F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~-~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~ 197 (231)
++.++|+.|++..=.++...- .+.+..++..+. .++.+...-..+|++. .+|. . + .+-..|.+.|+
T Consensus 2 y~~~~Sp~~~kv~~~l~~~~i---~~~~~~v~~~~~~~~~~~~~p~~~vPvL~--~~g~--~--l----~dS~~I~~yL~ 68 (75)
T PF13417_consen 2 YGFPGSPYSQKVRLALEEKGI---PYELVPVDPEEKRPEFLKLNPKGKVPVLV--DDGE--V--L----TDSAAIIEYLE 68 (75)
T ss_dssp EEETTSHHHHHHHHHHHHHTE---EEEEEEEBTTSTSHHHHHHSTTSBSSEEE--ETTE--E--E----ESHHHHHHHHH
T ss_pred CCcCCChHHHHHHHHHHHcCC---eEEEeccCcccchhHHHhhcccccceEEE--ECCE--E--E----eCHHHHHHHHH
Confidence 678999999998765554311 356667776654 5677777788999987 4532 1 1 23467888888
Q ss_pred Hhhc
Q 026887 198 LHNT 201 (231)
Q Consensus 198 ~~~~ 201 (231)
+...
T Consensus 69 ~~~~ 72 (75)
T PF13417_consen 69 ERYP 72 (75)
T ss_dssp HHST
T ss_pred HHcC
Confidence 7754
No 262
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=65.03 E-value=18 Score=26.63 Aligned_cols=46 Identities=13% Similarity=0.247 Sum_probs=39.6
Q ss_pred HHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC
Q 026887 107 LSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE 153 (231)
Q Consensus 107 l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~ 153 (231)
+.+.++++++|.=.|+-|+.-. ....|+++.++|. ++.++.+-|.+
T Consensus 16 l~~y~Gkv~LIVNvAs~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnq 63 (108)
T PF00255_consen 16 LSKYKGKVLLIVNVASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQ 63 (108)
T ss_dssp GGGGTTSEEEEEEEESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBST
T ss_pred HHHcCCCEEEEEecccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHH
Confidence 4566799999999999999999 6779999999987 59999999875
No 263
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=64.91 E-value=41 Score=27.64 Aligned_cols=55 Identities=16% Similarity=0.270 Sum_probs=36.2
Q ss_pred hcCCCeEEEEEEcCCCh-hhHhhhHHHHHHHHHCC-----CeE--EEEEECC-CCHHHHHHCCC
Q 026887 109 QAGDRLVIVEFYGTWCA-SCRALFPKLCRTAEEHP-----EIV--FLKVNFD-ENKPMCKSLNV 163 (231)
Q Consensus 109 ~~~~k~vlv~F~a~wC~-~C~~~~p~l~~l~~~~~-----~v~--~~~Vd~d-~~~~l~~~~~i 163 (231)
+.++++++|.|.=+.|+ -|-.+...+.++.++.. ++. ++.||-+ +.++..++|..
T Consensus 64 ~l~Gk~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~Y~~ 127 (207)
T COG1999 64 DLKGKPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKKYAE 127 (207)
T ss_pred ccCCCEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHHHhc
Confidence 34589999999988885 58888888877766654 244 4555543 22455555544
No 264
>cd03024 DsbA_FrnE DsbA family, FrnE subfamily; FrnE is a DsbA-like protein containing a CXXC motif. It is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=63.06 E-value=8 Score=30.93 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=25.6
Q ss_pred CHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHH
Q 026887 154 NKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIA 197 (231)
Q Consensus 154 ~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~ 197 (231)
+...+.+.||.++||+++ +|+ .. +. +..+.+.+.+.|+
T Consensus 164 ~~~~a~~~gv~G~Pt~vv--~g~-~~--~~-G~~~~~~~~~~i~ 201 (201)
T cd03024 164 DEARARQLGISGVPFFVF--NGK-YA--VS-GAQPPEVFLQALR 201 (201)
T ss_pred HHHHHHHCCCCcCCEEEE--CCe-Ee--ec-CCCCHHHHHHHhC
Confidence 345678899999999988 543 21 23 3466677777663
No 265
>PF04134 DUF393: Protein of unknown function, DUF393; InterPro: IPR007263 The DCC family, named after the conserved N-terminal DxxCxxC motif, encompasses COG3011 from COG. Proteins in this family are predicted to have a thioredoxin-like fold which, together with the presence of an invariant catalytic cysteine residue, suggests that they are a novel group of thiol-disulphide oxidoreductases []. As some of the bacterial proteins are encoded near penicillin-binding proteins, it has been suggested that these may be involved in redox regulation of cell wall biosynthesis [].
Probab=62.08 E-value=12 Score=27.14 Aligned_cols=56 Identities=16% Similarity=0.277 Sum_probs=36.7
Q ss_pred EEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCC--CCCEEEEE-ECC
Q 026887 119 FYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVK--VLPYFHFY-RGA 175 (231)
Q Consensus 119 F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~--~~Pt~~~~-~~g 175 (231)
||-.+|+-|......+.+. .....+.|+.+.-+...++.+.+++. ..-+.+.. .+|
T Consensus 2 ~YDg~C~lC~~~~~~l~~~-d~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~g 60 (114)
T PF04134_consen 2 FYDGDCPLCRREVRFLRRR-DRGGRLRFVDIQSEPDQALLASYGISPEDADSRLHLIDDG 60 (114)
T ss_pred EECCCCHhHHHHHHHHHhc-CCCCCEEEEECCChhhhhHHHhcCcCHHHHcCeeEEecCC
Confidence 7889999999998888777 22334777766445555556667765 34444443 343
No 266
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=61.42 E-value=30 Score=23.90 Aligned_cols=53 Identities=9% Similarity=0.112 Sum_probs=34.1
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC-HHHHHHCCCCCCCEEEE
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN-KPMCKSLNVKVLPYFHF 171 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~-~~l~~~~~i~~~Pt~~~ 171 (231)
+..|+...|+.|+...-.+++..- ++.++.++.... +++.+......+|++..
T Consensus 19 ~~Ly~~~~sp~~~kv~~~L~~~gl---~~~~~~v~~~~~~~~~~~~np~~~vPvL~~ 72 (89)
T cd03055 19 IRLYSMRFCPYAQRARLVLAAKNI---PHEVININLKDKPDWFLEKNPQGKVPALEI 72 (89)
T ss_pred EEEEeCCCCchHHHHHHHHHHcCC---CCeEEEeCCCCCcHHHHhhCCCCCcCEEEE
Confidence 444677889999987655554321 355666665543 34556566778999874
No 267
>KOG1422 consensus Intracellular Cl- channel CLIC, contains GST domain [Inorganic ion transport and metabolism]
Probab=56.43 E-value=81 Score=26.26 Aligned_cols=67 Identities=15% Similarity=0.196 Sum_probs=43.1
Q ss_pred CChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHC-CCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 123 WCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSL-NVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 123 wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~-~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
.|+.|+++.-.+. .+...+.+-.||....++..... .-..+|-+. | +++ . ..+.++|+++|++...
T Consensus 20 dcpf~qr~~m~L~---~k~~~f~vttVd~~~kp~~f~~~sp~~~~P~l~-~-d~~--~------~tDs~~Ie~~Lee~l~ 86 (221)
T KOG1422|consen 20 DCPFCQRLFMTLE---LKGVPFKVTTVDLSRKPEWFLDISPGGKPPVLK-F-DEK--W------VTDSDKIEEFLEEKLP 86 (221)
T ss_pred CChhHHHHHHHHH---HcCCCceEEEeecCCCcHHHHhhCCCCCCCeEE-e-CCc--e------eccHHHHHHHHHHhcC
Confidence 4777777665555 44446888899998877665444 444555544 4 433 1 1456889999998765
Q ss_pred C
Q 026887 202 D 202 (231)
Q Consensus 202 ~ 202 (231)
.
T Consensus 87 ~ 87 (221)
T KOG1422|consen 87 P 87 (221)
T ss_pred C
Confidence 3
No 268
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=56.15 E-value=1.1e+02 Score=24.86 Aligned_cols=92 Identities=15% Similarity=0.198 Sum_probs=52.5
Q ss_pred HHhcCCCeEEEEEE-cCCChhhHhhhHHHHHHHHHCC--CeEEEEEEC----------------------------CCCH
Q 026887 107 LSQAGDRLVIVEFY-GTWCASCRALFPKLCRTAEEHP--EIVFLKVNF----------------------------DENK 155 (231)
Q Consensus 107 l~~~~~k~vlv~F~-a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~----------------------------d~~~ 155 (231)
|.+..++.|++.|| .++---|=..--.+.+.+.++. |..++.+.+ |.+.
T Consensus 28 L~dy~gkyvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fshlAW~ntprk~gGlg~~~iPllsD~~~ 107 (196)
T KOG0852|consen 28 LSDYKGKYVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFSHLAWINTPRKQGGLGPLNIPLLSDLNH 107 (196)
T ss_pred ehhhcccEEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhhhhhHhcCchhhCCcCccccceeeccch
Confidence 45566899999998 5665566444344445555554 334444443 3446
Q ss_pred HHHHHCCCC----CCC--EEEEEECCCceEEEEec----CccCHHHHHHHHHHh
Q 026887 156 PMCKSLNVK----VLP--YFHFYRGAHGQLESFSC----SLAKFQKIKEAIALH 199 (231)
Q Consensus 156 ~l~~~~~i~----~~P--t~~~~~~g~~~~~~~~g----~~~~~~~l~~~l~~~ 199 (231)
++++.||+. |++ -++++ +.++.+.++.. .+.+.++....++..
T Consensus 108 ~IsrdyGvL~~~~G~~lRglfII-d~~gi~R~it~NDlpvgRSVdE~lRLvqAf 160 (196)
T KOG0852|consen 108 EISRDYGVLKEDEGIALRGLFII-DPDGILRQITINDLPVGRSVDETLRLVQAF 160 (196)
T ss_pred hhHHhcCceecCCCcceeeeEEE-ccccceEEeeecccCCCccHHHHHHHHHHH
Confidence 789999875 555 23333 44446655332 335566666666643
No 269
>PF06953 ArsD: Arsenical resistance operon trans-acting repressor ArsD; InterPro: IPR010712 This family consists of several bacterial arsenical resistance operon trans-acting repressor ArsD proteins. ArsD is a trans-acting repressor of the arsRDABC operon that confers resistance to arsenicals and antimonials in Escherichia coli. It possesses two-pairs of vicinal cysteine residues, Cys(12)-Cys(13) and Cys(112)-Cys(113), that potentially form separate binding sites for the metalloids that trigger dissociation of ArsD from the operon. However, as a homodimer it has four vicinal cysteine pairs [].; GO: 0003677 DNA binding, 0045892 negative regulation of transcription, DNA-dependent, 0046685 response to arsenic-containing substance; PDB: 3MWH_A 3KGK_A 3KTB_B.
Probab=55.51 E-value=70 Score=24.17 Aligned_cols=55 Identities=9% Similarity=0.178 Sum_probs=33.6
Q ss_pred CCeEEEEEECCCCH----------HHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 142 PEIVFLKVNFDENK----------PMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 142 ~~v~~~~Vd~d~~~----------~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
.++.+.+.|..+++ ++.++-|...+|-+++ || ++.. .|.+++.++|.+++.-...
T Consensus 39 ~gv~v~RyNL~~~P~aF~~n~~V~~~L~~~G~e~LPitlV--dG--eiv~-~G~YPt~eEl~~~~~i~~~ 103 (123)
T PF06953_consen 39 QGVEVERYNLAQNPQAFVENPEVNQLLQTEGAEALPITLV--DG--EIVK-TGRYPTNEELAEWLGISFS 103 (123)
T ss_dssp TT-EEEEEETTT-TTHHHHSHHHHHHHHHH-GGG-SEEEE--TT--EEEE-ESS---HHHHHHHHT--GG
T ss_pred CCceEEEEccccCHHHHHhCHHHHHHHHHcCcccCCEEEE--CC--EEEE-ecCCCCHHHHHHHhCCCcc
Confidence 47999999998764 3556678999998776 64 4443 5667888999888875543
No 270
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=55.05 E-value=58 Score=26.06 Aligned_cols=84 Identities=12% Similarity=0.220 Sum_probs=58.4
Q ss_pred HHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCC--CeEEEEEECCC--------CHHHH----HHCCCCCCCEEEEE
Q 026887 107 LSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHP--EIVFLKVNFDE--------NKPMC----KSLNVKVLPYFHFY 172 (231)
Q Consensus 107 l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~--~v~~~~Vd~d~--------~~~l~----~~~~i~~~Pt~~~~ 172 (231)
+.+.+++.++|.=-|+.|+.-......+.++.++|. +++++..-|.+ +.++. .+|+.. +-+|
T Consensus 29 l~~yrGkV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~Ei~~f~~~r~~~~----f~if 104 (171)
T KOG1651|consen 29 LSQYRGKVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEEILNFVKVRYGAE----FPIF 104 (171)
T ss_pred HHHhCCeEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHHHHHHHHhccCCC----CccE
Confidence 566779999999999999999977889999999986 58999888863 34443 444443 2344
Q ss_pred ECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 173 RGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 173 ~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
.. ++ ..| .+.+-+.++|++...
T Consensus 105 ~K----id-VNG--~~~~PlykfLK~~~~ 126 (171)
T KOG1651|consen 105 QK----ID-VNG--DNADPLYKFLKKVKG 126 (171)
T ss_pred eE----Ee-cCC--CCCchHHHHHhhcCC
Confidence 21 11 222 455678888876544
No 271
>PRK13730 conjugal transfer pilus assembly protein TrbC; Provisional
Probab=54.78 E-value=87 Score=25.94 Aligned_cols=41 Identities=5% Similarity=0.200 Sum_probs=29.0
Q ss_pred CHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHHHhh
Q 026887 154 NKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHN 200 (231)
Q Consensus 154 ~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~ 200 (231)
+|.+.++|+|+.+|++++... .....+.|. .+ +...|++..
T Consensus 151 DP~lF~~F~I~~VPafVv~C~--~~yD~I~GN-Is---l~~ALe~iA 191 (212)
T PRK13730 151 DPTLFSQYGIRSVPALVVFCS--QGYDIIRGN-LR---VGQALEKVA 191 (212)
T ss_pred CHHHHHhcCCccccEEEEEcC--CCCCEEEec-cc---HHHHHHHHH
Confidence 588999999999999999754 245566664 33 555555554
No 272
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=51.39 E-value=12 Score=29.74 Aligned_cols=22 Identities=9% Similarity=0.262 Sum_probs=18.0
Q ss_pred HHHHHHCCCCCCCEEEEEECCC
Q 026887 155 KPMCKSLNVKVLPYFHFYRGAH 176 (231)
Q Consensus 155 ~~l~~~~~i~~~Pt~~~~~~g~ 176 (231)
...+.++||.++||+++.+++.
T Consensus 159 ~~~a~~~gv~g~Ptfvv~~~~~ 180 (193)
T cd03025 159 QKLARELGINGFPTLVLEDDNG 180 (193)
T ss_pred HHHHHHcCCCccCEEEEEeCCe
Confidence 4567889999999999986643
No 273
>PF09822 ABC_transp_aux: ABC-type uncharacterized transport system; InterPro: IPR019196 This domain is found in various eukaryotic and prokaryotic intra-flagellar transport proteins involved in gliding motility, as well as in several hypothetical proteins.
Probab=51.34 E-value=1.5e+02 Score=25.03 Aligned_cols=62 Identities=18% Similarity=0.145 Sum_probs=37.6
Q ss_pred HHHHHHhcCCCeEEEEEEcCC------ChhhHhhhHHHHHHHHHCC-CeEEEEEECCCCHHHHHH----CCCCC
Q 026887 103 FLEALSQAGDRLVIVEFYGTW------CASCRALFPKLCRTAEEHP-EIVFLKVNFDENKPMCKS----LNVKV 165 (231)
Q Consensus 103 ~~~~l~~~~~k~vlv~F~a~w------C~~C~~~~p~l~~l~~~~~-~v~~~~Vd~d~~~~l~~~----~~i~~ 165 (231)
-.+.|++. +++|-|.+|.+- -..=+.....+++.+...+ ++.+-.||.+.+++..++ +||..
T Consensus 16 T~~~L~~L-~~pV~i~~~~s~~l~~~~~~~~~~v~~lL~~y~~~s~g~i~v~~iDp~~~~~~~~~~~~~~Gi~~ 88 (271)
T PF09822_consen 16 TKKVLKSL-DEPVTITVYFSRELPPELSPLRKQVRDLLDEYARYSPGKIKVEFIDPDENPSEAEEKAKEYGIQP 88 (271)
T ss_pred HHHHHHhC-CCCEEEEEEECCCcchhhhHHHHHHHHHHHHHHHhCCCceEEEEECCCCChHHHHHHHHhcCCCc
Confidence 34456655 445555555543 3333444445555555566 599999999877665555 88876
No 274
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=51.21 E-value=22 Score=28.11 Aligned_cols=27 Identities=26% Similarity=0.405 Sum_probs=24.5
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCC
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHP 142 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~ 142 (231)
|..|+-+.|+.|-...+.+.++.++++
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~ 29 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG 29 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC
Confidence 567889999999999999999999984
No 275
>cd03056 GST_N_4 GST_N family, unknown subfamily 4; composed of uncharacterized bacterial proteins with similarity to GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=50.51 E-value=65 Score=20.63 Aligned_cols=51 Identities=8% Similarity=0.030 Sum_probs=32.2
Q ss_pred EEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCC----CHHHHHHCCCCCCCEEEE
Q 026887 118 EFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE----NKPMCKSLNVKVLPYFHF 171 (231)
Q Consensus 118 ~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~----~~~l~~~~~i~~~Pt~~~ 171 (231)
.|+.+.|+.|+...-.+++..- .+....+|... .+++.+......+|++..
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~~~---~~~~~~i~~~~~~~~~~~~~~~~p~~~vP~l~~ 57 (73)
T cd03056 3 LYGFPLSGNCYKVRLLLALLGI---PYEWVEVDILKGETRTPEFLALNPNGEVPVLEL 57 (73)
T ss_pred EEeCCCCccHHHHHHHHHHcCC---CcEEEEecCCCcccCCHHHHHhCCCCCCCEEEE
Confidence 4778899999987766655422 34555666432 244555555668999864
No 276
>cd03022 DsbA_HCCA_Iso DsbA family, 2-hydroxychromene-2-carboxylate (HCCA) isomerase subfamily; HCCA isomerase is a glutathione (GSH) dependent enzyme involved in the naphthalene catabolic pathway. It converts HCCA, a hemiketal formed spontaneously after ring cleavage of 1,2-dihydroxynapthalene by a dioxygenase, into cis-o-hydroxybenzylidenepyruvate (cHBPA). This is the fourth reaction in a six-step pathway that converts napthalene into salicylate. HCCA isomerase is unique to bacteria that degrade polycyclic aromatic compounds. It is closely related to the eukaryotic protein, GSH transferase kappa (GSTK).
Probab=50.10 E-value=16 Score=28.79 Aligned_cols=17 Identities=18% Similarity=0.094 Sum_probs=14.5
Q ss_pred HHHHHHCCCCCCCEEEE
Q 026887 155 KPMCKSLNVKVLPYFHF 171 (231)
Q Consensus 155 ~~l~~~~~i~~~Pt~~~ 171 (231)
.+.+.++||.++||+++
T Consensus 157 ~~~a~~~gi~gvPtfvv 173 (192)
T cd03022 157 TEEAIARGVFGVPTFVV 173 (192)
T ss_pred HHHHHHcCCCcCCeEEE
Confidence 45678899999999988
No 277
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=49.91 E-value=38 Score=30.20 Aligned_cols=103 Identities=12% Similarity=0.126 Sum_probs=59.2
Q ss_pred eEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHH----HHHHHCCC----eEEEEEECCCC---HHHHHHCC
Q 026887 94 MIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLC----RTAEEHPE----IVFLKVNFDEN---KPMCKSLN 162 (231)
Q Consensus 94 ~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~----~l~~~~~~----v~~~~Vd~d~~---~~l~~~~~ 162 (231)
..+|.-..++ |+...-+..-+.|-| ||.|-+..-.+. ++.+++.+ +++.-+-|--| +.--..+|
T Consensus 239 ~~EV~V~~eI---LqslglR~~~v~~ia--CP~CGR~~~dv~~~~~~~~~~~~~~~~pl~VAVMGCVVNGPGEak~AdiG 313 (361)
T COG0821 239 VEEVKVAQEI---LQSLGLRSRGVEVIA--CPTCGRTEFDVIQTLNEVEQRLEHLKTPLKVAVMGCVVNGPGEAKHADIG 313 (361)
T ss_pred hhhhHHHHHH---HHHhCccccCceEEE--CCCCCceeehHHHHHHHHHHHhhccCCCceEEEEEeEecCCcchhcccee
Confidence 3444434444 444333445555555 999987654443 44444432 55555555433 22334567
Q ss_pred CCC--CCEEEEEECCCceEEEEecCccCHHHHHHHHHHhhcCC
Q 026887 163 VKV--LPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDR 203 (231)
Q Consensus 163 i~~--~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~~~ 203 (231)
|.+ -|...+|++|+ .+.++.+... .++|...++++....
T Consensus 314 ia~~~~~~~~~f~~g~-~~~~~~~~~~-~eel~~~i~~~~~~~ 354 (361)
T COG0821 314 IAGGGKGSGPVFVKGE-IIKKLPEEDI-VEELEALIEAYAEER 354 (361)
T ss_pred eecCCCCeeEEEECCe-EEEecChhhH-HHHHHHHHHHHHHHh
Confidence 665 58888998876 7777766433 477888887776543
No 278
>COG0278 Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=49.39 E-value=1e+02 Score=22.56 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=41.8
Q ss_pred HHHHHHHHhcCCCeEEEEEEc---CCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCC-CCCCCEEE-EEECC
Q 026887 101 QEFLEALSQAGDRLVIVEFYG---TWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLN-VKVLPYFH-FYRGA 175 (231)
Q Consensus 101 ~~~~~~l~~~~~k~vlv~F~a---~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~-i~~~Pt~~-~~~~g 175 (231)
+.+++.+++ ++.++.+=.+ |-|+...+....+... .-+.|..||+-+++++.+.+. ...+||+= +|-+|
T Consensus 6 ~~I~~~i~~--n~VvLFMKGtp~~P~CGFS~~~vqiL~~~----g~v~~~~vnVL~d~eiR~~lk~~s~WPT~PQLyi~G 79 (105)
T COG0278 6 DRIQKQIKE--NPVVLFMKGTPEFPQCGFSAQAVQILSAC----GVVDFAYVDVLQDPEIRQGLKEYSNWPTFPQLYVNG 79 (105)
T ss_pred HHHHHHhhc--CceEEEecCCCCCCCCCccHHHHHHHHHc----CCcceeEEeeccCHHHHhccHhhcCCCCCceeeECC
Confidence 445555554 4444433344 4566655554444333 228899999999998877664 34677753 66676
Q ss_pred C
Q 026887 176 H 176 (231)
Q Consensus 176 ~ 176 (231)
+
T Consensus 80 E 80 (105)
T COG0278 80 E 80 (105)
T ss_pred E
Confidence 5
No 279
>cd03021 DsbA_GSTK DsbA family, Glutathione (GSH) S-transferase Kappa (GSTK) subfamily; GSTK is a member of the GST family of enzymes which catalyzes the transfer of the thiol of GSH to electrophilic substrates. It is specifically located in the mitochondria and peroxisomes, unlike other members of the canonical GST family, which are mainly cytosolic. The biological substrates of GSTK are not yet known. It is presumed to have a protective role during respiration when large amounts of reactive oxygen species are generated. GSTK has the same general fold as DsbA, consisting of a thioredoxin domain interrupted by an alpha-helical domain and its biological unit is a homodimer. GSTK is closely related to the bacterial enzyme, 2-hydroxychromene-2-carboxylate (HCCA) isomerase. It shows little sequence similarity to the other members of the GST family.
Probab=43.97 E-value=18 Score=29.51 Aligned_cols=28 Identities=18% Similarity=0.175 Sum_probs=18.7
Q ss_pred HHHHHCCCCCCCEEEEEECCCceEEEEec
Q 026887 156 PMCKSLNVKVLPYFHFYRGAHGQLESFSC 184 (231)
Q Consensus 156 ~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g 184 (231)
+-+.+.||.|+|++++= ++++..+.+.|
T Consensus 170 ~~A~~~Gv~GVP~fvv~-~~~~~~e~fwG 197 (209)
T cd03021 170 DEALKYGAFGLPWIVVT-NDKGKTEMFFG 197 (209)
T ss_pred HHHHHcCCCCCCEEEEE-cCCCCccceec
Confidence 44577899999999884 32233445666
No 280
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=39.93 E-value=89 Score=24.64 Aligned_cols=67 Identities=18% Similarity=0.256 Sum_probs=46.5
Q ss_pred HhcCCCe-EEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECC---CCHHHHHHCCCCCCCEEEEEEC
Q 026887 108 SQAGDRL-VIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD---ENKPMCKSLNVKVLPYFHFYRG 174 (231)
Q Consensus 108 ~~~~~k~-vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d---~~~~l~~~~~i~~~Pt~~~~~~ 174 (231)
.+..+|. ++.-|=+-.-+-|-.....+.+.+.++.+..++.|..| ....+|...||..+=++--|++
T Consensus 40 ~~~~gk~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~~~~Vl~IS~DLPFAq~RfC~aeGi~nv~~lSd~r~ 110 (158)
T COG2077 40 ADFAGKKKVISVFPSIDTPVCATQVRKFNEEAAKLGNTVVLCISMDLPFAQKRFCGAEGIENVITLSDFRD 110 (158)
T ss_pred cccCCceEEEEEccCCCCchhhHHHHHHHHHHhccCCcEEEEEeCCChhHHhhhhhhcCcccceEhhhhhh
Confidence 3334444 55556677899999999999999999999888877776 3455666666665444444433
No 281
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=39.91 E-value=1.7e+02 Score=22.45 Aligned_cols=104 Identities=13% Similarity=0.205 Sum_probs=50.2
Q ss_pred CCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHh-hhHHHHHHHHH--CCCeEEEEEECCCCHH---HHHHCCCC-
Q 026887 92 PNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRA-LFPKLCRTAEE--HPEIVFLKVNFDENKP---MCKSLNVK- 164 (231)
Q Consensus 92 ~~~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~-~~p~l~~l~~~--~~~v~~~~Vd~d~~~~---l~~~~~i~- 164 (231)
.-+.++.+.++.++.+++. ....+| +-.+-||=--. .+|......+. -|+ .++.|=..+..+ -++.|=..
T Consensus 16 ~Gf~eL~T~e~Vd~~~~~~-~GTtlV-vVNSVCGCAag~ARPa~~~al~~~kkPD-~lvTVFAGqDkEAt~~aR~yf~~~ 92 (136)
T PF06491_consen 16 AGFEELTTAEEVDEALKNK-EGTTLV-VVNSVCGCAAGNARPAAAMALQNDKKPD-HLVTVFAGQDKEATAKAREYFEPY 92 (136)
T ss_dssp TT-EE--SHHHHHHHHHH---SEEEE-EEE-SSHHHHHTHHHHHHHHHHHSS--S-EEEEEETTTSHHHHHHHHHTSTTS
T ss_pred cCccccCCHHHHHHHHhCC-CCcEEE-EEeccccccccccCHHHHHHHhCCCCCC-ceEEeccCCCHHHHHHHHHhcCCC
Confidence 3478899999999999853 344444 34566763332 24554433332 233 344444443332 22333222
Q ss_pred --CCCEEEEEECCCceEEEE---ecCccCHHHHHHHHHHh
Q 026887 165 --VLPYFHFYRGAHGQLESF---SCSLAKFQKIKEAIALH 199 (231)
Q Consensus 165 --~~Pt~~~~~~g~~~~~~~---~g~~~~~~~l~~~l~~~ 199 (231)
+=|.+.+||+|+ .+.-+ .-.+.+.+.|.+-|...
T Consensus 93 pPSSPS~ALfKdGe-lvh~ieRh~IEGr~a~~Ia~~L~~a 131 (136)
T PF06491_consen 93 PPSSPSIALFKDGE-LVHFIERHHIEGRPAEEIAENLQDA 131 (136)
T ss_dssp ---SSEEEEEETTE-EEEEE-GGGTTTS-HHHHHHHHHHH
T ss_pred CCCCchheeeeCCE-EEEEeehhhcCCCCHHHHHHHHHHH
Confidence 447999999965 33322 22345666666655543
No 282
>PF14424 Toxin-deaminase: The BURPS668_1122 family of deaminases
Probab=39.83 E-value=1.3e+02 Score=22.92 Aligned_cols=31 Identities=19% Similarity=0.438 Sum_probs=22.8
Q ss_pred EEEEc--CCChhhHhhhHHHHHHHHHCCCeEEEEEE
Q 026887 117 VEFYG--TWCASCRALFPKLCRTAEEHPEIVFLKVN 150 (231)
Q Consensus 117 v~F~a--~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd 150 (231)
|+.|+ +-|..|.. .++++.++||++.+..++
T Consensus 99 i~l~te~~pC~SC~~---vi~qF~~~~pni~~~v~~ 131 (133)
T PF14424_consen 99 IDLFTELPPCESCSN---VIEQFKKDFPNIKVNVVY 131 (133)
T ss_pred EEEEecCCcChhHHH---HHHHHHHHCCCcEEEEec
Confidence 44444 56999985 788999999998776543
No 283
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=39.00 E-value=39 Score=24.97 Aligned_cols=33 Identities=12% Similarity=-0.043 Sum_probs=22.5
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCC
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE 153 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~ 153 (231)
+..|+.+.|..|+.....+++- ++.|-.+|+-+
T Consensus 2 i~iy~~p~C~~crkA~~~L~~~-----gi~~~~~d~~~ 34 (113)
T cd03033 2 IIFYEKPGCANNARQKALLEAA-----GHEVEVRDLLT 34 (113)
T ss_pred EEEEECCCCHHHHHHHHHHHHc-----CCCcEEeehhc
Confidence 4568899999999887666543 45555555543
No 284
>COG5494 Predicted thioredoxin/glutaredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=34.35 E-value=2e+02 Score=24.07 Aligned_cols=72 Identities=14% Similarity=0.129 Sum_probs=45.9
Q ss_pred EEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHHH
Q 026887 119 FYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIAL 198 (231)
Q Consensus 119 F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~ 198 (231)
|.-..|..|-.+...+++- --.++++|+ |...-+.+.-+-+|-++|.+++ +|+ +. .++..++++|+..++.
T Consensus 16 ~~HktC~ssy~Lf~~L~nk-gll~~Vkii--~a~~p~f~~~~~~V~SvP~Vf~--DGe--l~--~~dpVdp~~ies~~~G 86 (265)
T COG5494 16 FTHKTCVSSYMLFEYLENK-GLLGKVKII--DAELPPFLAFEKGVISVPSVFI--DGE--LV--YADPVDPEEIESILSG 86 (265)
T ss_pred EEecchHHHHHHHHHHHhc-CCCCCceEE--EcCCChHHHhhcceeecceEEE--cCe--EE--EcCCCCHHHHHHHHcC
Confidence 4456788888766555431 013456664 4555556666778999999654 643 33 3456788999998875
Q ss_pred h
Q 026887 199 H 199 (231)
Q Consensus 199 ~ 199 (231)
.
T Consensus 87 ~ 87 (265)
T COG5494 87 Q 87 (265)
T ss_pred c
Confidence 4
No 285
>PF11287 DUF3088: Protein of unknown function (DUF3088); InterPro: IPR021439 This family of proteins with unknown function appears to be restricted to Proteobacteria.
Probab=32.67 E-value=81 Score=23.47 Aligned_cols=51 Identities=18% Similarity=0.337 Sum_probs=34.1
Q ss_pred CChhhHhhhHHHHHHHHHCCCeEEEEEECCCC-HHHHHHCC--CCCCCEEEEEE
Q 026887 123 WCASCRALFPKLCRTAEEHPEIVFLKVNFDEN-KPMCKSLN--VKVLPYFHFYR 173 (231)
Q Consensus 123 wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~-~~l~~~~~--i~~~Pt~~~~~ 173 (231)
.|++|..++-.+.-.-.--..+.+..|+...- .++....| -++.|++++=.
T Consensus 23 ~Cp~c~~iEGlLa~~P~l~~~ldV~rV~f~RPR~~vi~llGE~~QslPvLVL~~ 76 (112)
T PF11287_consen 23 YCPHCAAIEGLLASFPDLRERLDVRRVDFPRPRQAVIALLGEANQSLPVLVLAD 76 (112)
T ss_pred ECCchHHHHhHHhhChhhhhcccEEEeCCCCchHHHHHHhChhccCCCEEEeCC
Confidence 39999998877764433333478888888754 34444444 36899998853
No 286
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=32.67 E-value=59 Score=23.76 Aligned_cols=32 Identities=16% Similarity=0.174 Sum_probs=22.2
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCC
Q 026887 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE 153 (231)
Q Consensus 117 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~ 153 (231)
..|+.+.|..|++....+++- ++.+..+|+-+
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~ 33 (112)
T cd03034 2 TIYHNPRCSKSRNALALLEEA-----GIEPEIVEYLK 33 (112)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccc
Confidence 468899999999987666543 45555566543
No 287
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=32.66 E-value=58 Score=23.89 Aligned_cols=33 Identities=18% Similarity=0.197 Sum_probs=23.6
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC
Q 026887 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN 154 (231)
Q Consensus 117 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~ 154 (231)
..|+.+.|..|++....+++- ++.+..+|+.+.
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~~-----~i~~~~~di~~~ 34 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLEDK-----GIEPEVVKYLKN 34 (114)
T ss_pred EEEECCCCHHHHHHHHHHHHC-----CCCeEEEeccCC
Confidence 468899999999988777653 555556666443
No 288
>PF09499 RE_ApaLI: ApaLI-like restriction endonuclease; InterPro: IPR019036 There are four classes of restriction endonucleases: types I, II,III and IV. All types of enzymes recognise specific short DNA sequences and carry out the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. They differ in their recognition sequence, subunit composition, cleavage position, and cofactor requirements [, ], as summarised below: Type I enzymes (3.1.21.3 from EC) cleave at sites remote from recognition site; require both ATP and S-adenosyl-L-methionine to function; multifunctional protein with both restriction and methylase (2.1.1.72 from EC) activities. Type II enzymes (3.1.21.4 from EC) cleave within or at short specific distances from recognition site; most require magnesium; single function (restriction) enzymes independent of methylase. Type III enzymes (3.1.21.5 from EC) cleave at sites a short distance from recognition site; require ATP (but doesn't hydrolyse it); S-adenosyl-L-methionine stimulates reaction but is not required; exists as part of a complex with a modification methylase methylase (2.1.1.72 from EC). Type IV enzymes target methylated DNA. Type II restriction endonucleases (3.1.21.4 from EC) are components of prokaryotic DNA restriction-modification mechanisms that protect the organism against invading foreign DNA. These site-specific deoxyribonucleases catalyse the endonucleolytic cleavage of DNA to give specific double-stranded fragments with terminal 5'-phosphates. Of the 3000 restriction endonucleases that have been characterised, most are homodimeric or tetrameric enzymes that cleave target DNA at sequence-specific sites close to the recognition site. For homodimeric enzymes, the recognition site is usually a palindromic sequence 4-8 bp in length. Most enzymes require magnesium ions as a cofactor for catalysis. Although they can vary in their mode of recognition, many restriction endonucleases share a similar structural core comprising four beta-strands and one alpha-helix, as well as a similar mechanism of cleavage, suggesting a common ancestral origin []. However, there is still considerable diversity amongst restriction endonucleases [, ]. The target site recognition process triggers large conformational changes of the enzyme and the target DNA, leading to the activation of the catalytic centres. Like other DNA binding proteins, restriction enzymes are capable of non-specific DNA binding as well, which is the prerequisite for efficient target site location by facilitated diffusion. Non-specific binding usually does not involve interactions with the bases but only with the DNA backbone []. This entry includes R.ApaLI and R.XbaI restriction endonucleases. ApaLI recognises and cleaves the sequence GTGCAC.
Probab=31.92 E-value=1.5e+02 Score=24.01 Aligned_cols=57 Identities=12% Similarity=0.145 Sum_probs=42.6
Q ss_pred cccCCCCeEEeCChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHHHHHHHHHCCC
Q 026887 87 WEKNAPNMIDIHSTQEFLEALSQAGDRLVIVEFYGTWCASCRALFPKLCRTAEEHPE 143 (231)
Q Consensus 87 ~~~~~~~~~~i~s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~ 143 (231)
|+.....--+|.-+-.+-+.+++++-+|+.|.||-|.=..-.+....++.+.....+
T Consensus 118 wRdAtTdgdhi~kEhtrikvi~~aGy~PIrimf~~P~r~~~~~iq~~L~tlY~gvgG 174 (191)
T PF09499_consen 118 WRDATTDGDHITKEHTRIKVIKSAGYKPIRIMFYYPNREQAIRIQTTLKTLYNGVGG 174 (191)
T ss_pred EEecccCCChhhhHHHHHHHHHHCCCcceEEEEeCCCHHHHHHHHHHHHHHHHhcCc
Confidence 444445555666667788888888889999999999887777777777777666544
No 289
>cd02990 UAS_FAF1 UAS family, FAS-associated factor 1 (FAF1) subfamily; FAF1 contains a UAS domain of unknown function N-terminal to a ubiquitin-associated UBX domain. FAF1 also contains ubiquitin-associated UBA and nuclear targeting domains, N-terminal to the UAS domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. It is widely expressed in adult and embryonic tissues, and in tumor cell lines, and is localized not only in the cytoplasm where it interacts with Fas, but also in the nucleus. FAF1 contains phosphorylation sites for protein kinase CK2 within the nuclear targeting domain. Phosphorylation influences nuclear localization of FAF1 but does not affect its potentiation of Fas-induced apoptosis. Other functions have also been attributed to FAF1. It inhibits nuclear factor-kB (NF-kB) by interfering with the nuclear
Probab=30.69 E-value=2.5e+02 Score=21.55 Aligned_cols=86 Identities=6% Similarity=0.084 Sum_probs=56.2
Q ss_pred CCeEEEEEEcCCChhhHhhhHH------HHHHHHHCCCeEEEEEECCCCH------------------HHHHHCCCCCCC
Q 026887 112 DRLVIVEFYGTWCASCRALFPK------LCRTAEEHPEIVFLKVNFDENK------------------PMCKSLNVKVLP 167 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~------l~~l~~~~~~v~~~~Vd~d~~~------------------~l~~~~~i~~~P 167 (231)
.|+.+|+.+.+--..+..+-.. +.++.+ .++.+-.-|++... ...+.++...+|
T Consensus 21 ~K~L~VYLH~~~~~~t~~Fc~~~L~se~Vi~fl~--~nfv~Wg~dvt~~~~~~~fl~~~~~~~g~~a~~~~~~~~~~~fP 98 (136)
T cd02990 21 RKLLAIYLHHDESVLSNVFCSQLLCAESIVQYLS--QNFITWGWDMTKESNKARFLSSCTRHFGSVAAQTIRNIKTDQLP 98 (136)
T ss_pred cceEEEEEcCCCCccHHHHHHHHhcCHHHHHHHH--cCEEEEeeeccchhhhhHHHHhhhhhhhHHHHHHHHhcCcCCCC
Confidence 7999999999987544444332 223333 35888888887542 245668899999
Q ss_pred EEEEEECCC---ceEEEEecCccCHHHHHHHHHHhh
Q 026887 168 YFHFYRGAH---GQLESFSCSLAKFQKIKEAIALHN 200 (231)
Q Consensus 168 t~~~~~~g~---~~~~~~~g~~~~~~~l~~~l~~~~ 200 (231)
.+.++.... ..+.++.| ..+++++.+.|....
T Consensus 99 ~~avI~~~~~~~~vl~~i~G-~~~~~ell~~L~~~v 133 (136)
T cd02990 99 AILIIMGKRSSNEVLNVIQG-NTGVDELLMRLIEAM 133 (136)
T ss_pred eEEEEEecCCceEEEEEEEC-CCCHHHHHHHHHHHH
Confidence 988775332 34455555 567788877776543
No 290
>KOG2244 consensus Highly conserved protein containing a thioredoxin domain [General function prediction only]
Probab=30.65 E-value=40 Score=32.15 Aligned_cols=74 Identities=19% Similarity=0.210 Sum_probs=52.2
Q ss_pred ChHHHHHHHHhcCCCeEEEEEEcCCChhhHhhhHH-HH--HHHHHC-CCeEEEEEECCCCHHHHH--------HCCCCCC
Q 026887 99 STQEFLEALSQAGDRLVIVEFYGTWCASCRALFPK-LC--RTAEEH-PEIVFLKVNFDENKPMCK--------SLNVKVL 166 (231)
Q Consensus 99 s~~~~~~~l~~~~~k~vlv~F~a~wC~~C~~~~p~-l~--~l~~~~-~~v~~~~Vd~d~~~~l~~--------~~~i~~~ 166 (231)
..+.|+.+-++ +|++++...-..|.-|..|+.. ++ +.++.. .+++-++||-++.+++-+ ..+--|+
T Consensus 101 gqeaf~kar~e--nkpifLsvgystchwchvmekesfeneet~~ilnenfv~ikVDREERPDVDK~YM~Fv~assg~GGW 178 (786)
T KOG2244|consen 101 GQEAFNKARAE--NKPIFLSVGYSTCHWCHVMEKESFENEETGEILNENFVKIKVDREERPDVDKLYMAFVVASSGGGGW 178 (786)
T ss_pred hHHHHHHHHhc--CCCEEEEcccccchheeeeecccccCHHHHHHHhhhhhhhccChhhcCchHHHHHHHHHhccCCCCC
Confidence 35677776655 8999999999999999999764 22 344443 356777777777665433 4566788
Q ss_pred CEEEEEEC
Q 026887 167 PYFHFYRG 174 (231)
Q Consensus 167 Pt~~~~~~ 174 (231)
|--+|..+
T Consensus 179 PmsV~LTP 186 (786)
T KOG2244|consen 179 PMSVFLTP 186 (786)
T ss_pred ceeEEeCC
Confidence 87777654
No 291
>cd03052 GST_N_GDAP1 GST_N family, Ganglioside-induced differentiation-associated protein 1 (GDAP1) subfamily; GDAP1 was originally identified as a highly expressed gene at the differentiated stage of GD3 synthase-transfected cells. More recently, mutations in GDAP1 have been reported to cause both axonal and demyelinating autosomal-recessive Charcot-Marie-Tooth (CMT) type 4A neuropathy. CMT is characterized by slow and progressive weakness and atrophy of muscles. Sequence analysis of GDAP1 shows similarities and differences with GSTs; it appears to contain both N-terminal TRX-fold and C-terminal alpha helical domains of GSTs, however, it also contains additional C-terminal transmembrane domains unlike GSTs. GDAP1 is mainly expressed in neuronal cells and is localized in the mitochondria through its transmembrane domains. It does not exhibit GST activity using standard substrates.
Probab=29.67 E-value=1.7e+02 Score=19.26 Aligned_cols=51 Identities=10% Similarity=-0.055 Sum_probs=32.5
Q ss_pred EEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCC----CHHHHHHCCCCCCCEEE
Q 026887 117 VEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDE----NKPMCKSLNVKVLPYFH 170 (231)
Q Consensus 117 v~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~----~~~l~~~~~i~~~Pt~~ 170 (231)
..|+.+.|+.|++..-.+++..- .+.+..+|... .+++.+.--...+|++.
T Consensus 2 ~ly~~~~s~~s~rv~~~L~e~gl---~~e~~~v~~~~~~~~~~~~~~inP~g~vP~L~ 56 (73)
T cd03052 2 VLYHWTQSFSSQKVRLVIAEKGL---RCEEYDVSLPLSEHNEPWFMRLNPTGEVPVLI 56 (73)
T ss_pred EEecCCCCccHHHHHHHHHHcCC---CCEEEEecCCcCccCCHHHHHhCcCCCCCEEE
Confidence 35778889999887644444322 35666776632 24566656667899985
No 292
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=29.41 E-value=89 Score=28.10 Aligned_cols=74 Identities=7% Similarity=0.087 Sum_probs=40.0
Q ss_pred ChhhHhhhHH----HHHHHHHCCC----eEEEEEECCCC---HHHHHHCCCCCCC-EEEEEECCCceEEEEecCccCHHH
Q 026887 124 CASCRALFPK----LCRTAEEHPE----IVFLKVNFDEN---KPMCKSLNVKVLP-YFHFYRGAHGQLESFSCSLAKFQK 191 (231)
Q Consensus 124 C~~C~~~~p~----l~~l~~~~~~----v~~~~Vd~d~~---~~l~~~~~i~~~P-t~~~~~~g~~~~~~~~g~~~~~~~ 191 (231)
||.|..-.-. ..++.+++.+ +++.-.-|--| +.-...+||.+-+ ..++|++|+ .+..+.+... .++
T Consensus 271 CPgCgR~~~D~~~la~~vee~~~~~~~PlkIAVmGC~VNgpGEa~~aDIGIaG~~~~~~vf~~Gk-~v~kv~~~~~-~~~ 348 (360)
T PRK00366 271 CPTCGRTEFDVIQELAEVEQRLEHIKMPLKVAVMGCVVNGPGEAKEADIGIAGGNPKGPVFVDGE-KIKTLPEENI-VEE 348 (360)
T ss_pred CCCCCCCcccHHHHHHHHHHHhcCCCCCcEEEEeCCCCCCCCchhhCcEeEecCCCceEEEECCE-EeeeeChHhH-HHH
Confidence 5555554333 3355555543 55555555322 2334567877654 677888875 6666655322 345
Q ss_pred HHHHHHHh
Q 026887 192 IKEAIALH 199 (231)
Q Consensus 192 l~~~l~~~ 199 (231)
|.+.|++.
T Consensus 349 l~~~i~~~ 356 (360)
T PRK00366 349 LEAEIEAY 356 (360)
T ss_pred HHHHHHHH
Confidence 55555544
No 293
>PF10726 DUF2518: Protein of function (DUF2518); InterPro: IPR019664 This entry contains the Ycf51 protein family, which is conserved in Cyanobacteria. The function is not known.
Probab=29.30 E-value=2.1e+02 Score=22.33 Aligned_cols=46 Identities=11% Similarity=0.040 Sum_probs=34.7
Q ss_pred CCEEEEEECCCceEEEEecCccCHHHHHHHHHHhhcCCCCCCCCCC
Q 026887 166 LPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDRCSIGPPKG 211 (231)
Q Consensus 166 ~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~~~~~~~~~~~ 211 (231)
+..-++|+||..++.........+++++..+++...+-.+.|....
T Consensus 70 ~~~~~VyDnG~~~vVi~v~~~i~~~~leaTL~QaA~nL~s~GR~~~ 115 (145)
T PF10726_consen 70 VRYPIVYDNGADQVVIAVPPDITPEALEATLEQAASNLFSGGRSGR 115 (145)
T ss_pred eEeeEEEECCCcEEEEEcCCCCCHHHHHHHHHHHHHhccccCccCC
Confidence 4556799999877766666677889999999998877766554443
No 294
>cd00307 RuBisCO_small_like Ribulose bisphosphate carboxylase/oxygenase (Rubisco), small subunit and related proteins. Rubisco is a bifunctional enzyme catalyzes the initial steps of two opposing metabolic pathways: photosynthetic carbon fixation and the competing process of photorespiration. Rubisco Form I, present in plants and green algae, is composed of eight large and eight small subunits. The nearly identical small subunits are encoded by a family of nuclear genes. After translation, the small subunits are translocated across the chloroplast membrane, where an N-terminal signal peptide is cleaved off. While the large subunits contain the catalytic activities, it has been shown that the small subunits are important for catalysis by enhancing the catalytic rate through inducing conformational changes in the large subunits. This superfamily also contains specific proteins from cyanobacteria. CcmM plays a role in a CO2 concentrating mechanism, which cyanobacteria need to to overcome t
Probab=28.16 E-value=61 Score=22.80 Aligned_cols=34 Identities=21% Similarity=0.372 Sum_probs=22.1
Q ss_pred EEcCC---Chhh--HhhhHHHHH---HHHHCCC--eEEEEEECC
Q 026887 119 FYGTW---CASC--RALFPKLCR---TAEEHPE--IVFLKVNFD 152 (231)
Q Consensus 119 F~a~w---C~~C--~~~~p~l~~---l~~~~~~--v~~~~Vd~d 152 (231)
||.-| |..| +.....+.+ -.++|++ ++++.+|-.
T Consensus 28 ywt~w~lp~f~~~~~~~~~Vl~el~~c~~~~p~~YVRlig~D~~ 71 (84)
T cd00307 28 FRTSSWQSCGPIEGRSEAQVLAALEACLAEHPGEYVRLIGIDPK 71 (84)
T ss_pred cHhhhcCCCCCCCCCCHHHHHHHHHHHHHHCCCCeEEEEEEeCC
Confidence 44444 6777 555555554 4567887 888888865
No 295
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=27.94 E-value=77 Score=23.60 Aligned_cols=22 Identities=23% Similarity=0.424 Sum_probs=17.9
Q ss_pred EEEEEcCCChhhHhhhHHHHHH
Q 026887 116 IVEFYGTWCASCRALFPKLCRT 137 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l 137 (231)
+..|+.+.|..|+.....+++-
T Consensus 3 itiy~~p~C~t~rka~~~L~~~ 24 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLEEH 24 (117)
T ss_pred EEEEeCCCChHHHHHHHHHHHc
Confidence 5668899999999988777654
No 296
>cd03030 GRX_SH3BGR Glutaredoxin (GRX) family, SH3BGR (SH3 domain binding glutamic acid-rich protein) subfamily; a recently-identified subfamily composed of SH3BGR and similar proteins possessing significant sequence similarity to GRX, but without a redox active CXXC motif. The SH3BGR gene was cloned in an effort to identify genes mapping to chromosome 21, which could be involved in the pathogenesis of congenital heart disease affecting Down syndrome newborns. Several human SH3BGR-like (SH3BGRL) genes have been identified since, mapping to different locations in the chromosome. Of these, SH3BGRL3 was identified as a tumor necrosis factor (TNF) alpha inhibitory protein and was also named TIP-B1. Upregulation of expression of SH3BGRL3 is associated with differentiation. It has been suggested that it functions as a regulator of differentiation-related signal transduction pathways.
Probab=27.21 E-value=2.3e+02 Score=20.02 Aligned_cols=30 Identities=17% Similarity=0.207 Sum_probs=18.7
Q ss_pred CCeEEEEEECCCCHHHH----HHC----CCCCCCEEEE
Q 026887 142 PEIVFLKVNFDENKPMC----KSL----NVKVLPYFHF 171 (231)
Q Consensus 142 ~~v~~~~Vd~d~~~~l~----~~~----~i~~~Pt~~~ 171 (231)
.++.|-.+|++.+++.. ++- +-..+|.+++
T Consensus 29 k~I~f~eiDI~~d~~~r~em~~~~~~~~g~~tvPQIFi 66 (92)
T cd03030 29 KKIEFEEVDISMNEENRQWMRENVPNENGKPLPPQIFN 66 (92)
T ss_pred CCCceEEEecCCCHHHHHHHHHhcCCCCCCCCCCEEEE
Confidence 36889999998765433 232 2356677553
No 297
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=26.62 E-value=1.1e+02 Score=22.14 Aligned_cols=31 Identities=16% Similarity=0.429 Sum_probs=20.6
Q ss_pred EEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC
Q 026887 119 FYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN 154 (231)
Q Consensus 119 F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~ 154 (231)
|+.+.|..|+.....+++- ++.+-.+|..+.
T Consensus 1 Y~~~~C~t~rka~~~L~~~-----gi~~~~~d~~k~ 31 (110)
T PF03960_consen 1 YGNPNCSTCRKALKWLEEN-----GIEYEFIDYKKE 31 (110)
T ss_dssp EE-TT-HHHHHHHHHHHHT-----T--EEEEETTTS
T ss_pred CcCCCCHHHHHHHHHHHHc-----CCCeEeehhhhC
Confidence 5778999999988777652 677777888664
No 298
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=26.57 E-value=3e+02 Score=24.29 Aligned_cols=56 Identities=9% Similarity=0.097 Sum_probs=37.2
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC--HHHHHHCCCCCCCEEE
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN--KPMCKSLNVKVLPYFH 170 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~--~~l~~~~~i~~~Pt~~ 170 (231)
...+||++. ||.|++....++.+.+..+.+.++.||+... ...++++.-..+|.+-
T Consensus 76 ~~~~lIELG---sG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~p~l~ 133 (319)
T TIGR03439 76 SGSMLVELG---SGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNFSHVR 133 (319)
T ss_pred CCCEEEEEC---CCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccCCCeE
Confidence 345788875 7888888888888876555688999999753 2333344333445433
No 299
>KOG2868 consensus Decapping enzyme complex component DCP1 [Transcription; RNA processing and modification]
Probab=26.28 E-value=1.8e+02 Score=25.84 Aligned_cols=44 Identities=18% Similarity=0.196 Sum_probs=29.8
Q ss_pred HHCCCCCCCEEEEEECCCceEEEEec-CccCHHHHHHHHHHhhcC
Q 026887 159 KSLNVKVLPYFHFYRGAHGQLESFSC-SLAKFQKIKEAIALHNTD 202 (231)
Q Consensus 159 ~~~~i~~~Pt~~~~~~g~~~~~~~~g-~~~~~~~l~~~l~~~~~~ 202 (231)
..+....-.-+++|++..+.+..+.- ...+.+++...+++.+..
T Consensus 88 ~d~~~~~~g~fl~~rn~s~~i~glWf~d~~~~~ri~~L~~~ll~~ 132 (335)
T KOG2868|consen 88 KDLIFQLQGPFLLYRNESGSIYGLWFYDKNDCQRIATLLKKLLYR 132 (335)
T ss_pred CCeeeeecCcceeeeccccceeEEEecCcchHHHHHHHHHHHHHH
Confidence 33444556778888887777766655 345677888888888653
No 300
>COG3011 Predicted thiol-disulfide oxidoreductase [General function prediction only]
Probab=26.23 E-value=3.1e+02 Score=21.18 Aligned_cols=64 Identities=13% Similarity=0.217 Sum_probs=44.5
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCCCCCC-C-EEEEEECCC
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLNVKVL-P-YFHFYRGAH 176 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~i~~~-P-t~~~~~~g~ 176 (231)
+++-+|.+|-.-|+-|-.....+.+.-. -..+.|+.+..+....+.+..++..- + ++++.++|+
T Consensus 6 ~~p~~vvlyDG~C~lC~~~vrfLi~~D~-~~~i~f~~~q~e~g~~~l~~~~l~~~~~~s~~~~~~g~ 71 (137)
T COG3011 6 KKPDLVVLYDGVCPLCDGWVRFLIRRDQ-GGRIRFAALQSEPGQALLEAAGLDPEDVDSVLLVEAGQ 71 (137)
T ss_pred CCCCEEEEECCcchhHHHHHHHHHHhcc-CCcEEEEeccCchhhhHHhhcCCChhhhheeeEecCCc
Confidence 5677788999999999996655544311 22489999988888888888877644 4 444444443
No 301
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=24.67 E-value=2.7e+02 Score=22.77 Aligned_cols=58 Identities=12% Similarity=0.004 Sum_probs=35.5
Q ss_pred CeEEEEEECCCCHHHHHHCCCCC--C-------------CEEEEEECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 143 EIVFLKVNFDENKPMCKSLNVKV--L-------------PYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 143 ~v~~~~Vd~d~~~~l~~~~~i~~--~-------------Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
.+..+.-+.++.++++++|++.. + ..+++++ .+|.+.........+++|.+.|++..+
T Consensus 133 ~~~~ltg~~~~~~~~~k~~~V~~~~v~~~~~~~y~~~Hs~~~~lid-~~G~~~~~~~~~~~~~~i~~~l~~l~~ 205 (207)
T COG1999 133 RWIGLTGTPEQIEEVAKAYGVFYSKVPLDDSQNYTIDHSAGFYLID-ADGRFLGTYDYGEPPEEIAADLKKLLK 205 (207)
T ss_pred CeeeeeCCHHHHHHHHHHhcceeeecccCCCCCceeeeeeEEEEEC-CCCeEEEEecCCCChHHHHHHHHHHhh
Confidence 35566555556677788887763 2 2334444 344555444444558999999988764
No 302
>PF01216 Calsequestrin: Calsequestrin; InterPro: IPR001393 Calsequestrin is the principal calcium-binding protein present in the sarcoplasmic reticulum of cardiac and skeletal muscle []. It is a highly acidic protein that is able to bind over 40 calcium ions and acts as an internal calcium store in muscle. Sequence analysis has suggested that calcium is not bound in distinct pockets via EF-hand motifs, but rather via presentation of a charged protein surface. Two forms of calsequestrin have been identified. The cardiac form is present in cardiac and slow skeletal muscle and the fast skeletal form is found in fast skeletal muscle. The release of calsequestrin-bound calcium (through a a calcium release channel) triggers muscle contraction. The active protein is not highly structured, more than 50% of it adopting a random coil conformation []. When calcium binds there is a structural change whereby the alpha-helical content of the protein increases from 3 to 11% []. Both forms of calsequestrin are phosphorylated by casein kinase II, but the cardiac form is phosphorylated more rapidly and to a higher degree [].; GO: 0005509 calcium ion binding; PDB: 1SJI_B 2VAF_A 3UOM_C 1A8Y_A 3TRQ_A 3TRP_A 3US3_A.
Probab=24.25 E-value=5.4e+02 Score=23.31 Aligned_cols=103 Identities=17% Similarity=0.209 Sum_probs=62.6
Q ss_pred CCeEEeCChHHHHHHHHhcCCCeEEEEEEcC-CChhhHhhhHHHHHHHHHCCC-eEEEEEECCCCHHHHHHCCCCCCCEE
Q 026887 92 PNMIDIHSTQEFLEALSQAGDRLVIVEFYGT-WCASCRALFPKLCRTAEEHPE-IVFLKVNFDENKPMCKSLNVKVLPYF 169 (231)
Q Consensus 92 ~~~~~i~s~~~~~~~l~~~~~k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~-v~~~~Vd~d~~~~l~~~~~i~~~Pt~ 169 (231)
.++..|++..+++..-. ....+.+|=|+-+ -..+ ...+++.++.|.. ++|.. +-++.+++++++. +=.+
T Consensus 146 dPVeiIn~~~e~~~Fe~-ied~~klIGyFk~~~s~~----yk~FeeAAe~F~p~IkFfA---tfd~~vAk~L~lK-~nev 216 (383)
T PF01216_consen 146 DPVEIINNKHELKAFER-IEDDIKLIGYFKSEDSEH----YKEFEEAAEHFQPYIKFFA---TFDKKVAKKLGLK-LNEV 216 (383)
T ss_dssp SSEEEE-SHHHHHHHHH---SS-EEEEE-SSTTSHH----HHHHHHHHHHCTTTSEEEE---E-SHHHHHHHT-S-TT-E
T ss_pred cchhhhcChhhhhhhhh-cccceeEEEEeCCCCcHH----HHHHHHHHHhhcCceeEEE---EecchhhhhcCcc-ccce
Confidence 34667777777654332 2235666655554 3443 3456778888854 88775 3468899999997 7788
Q ss_pred EEEECCCceEEEEecCccCHHHHHHHHHHhhcCC
Q 026887 170 HFYRGAHGQLESFSCSLAKFQKIKEAIALHNTDR 203 (231)
Q Consensus 170 ~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~~~ 203 (231)
-||.+=......+.+...+.++|.++|++|....
T Consensus 217 ~fyepF~~~pi~ip~~p~~e~e~~~fi~~h~rpt 250 (383)
T PF01216_consen 217 DFYEPFMDEPITIPGKPYTEEELVEFIEEHKRPT 250 (383)
T ss_dssp EEE-TTSSSEEEESSSS--HHHHHHHHHHT-S-S
T ss_pred eeeccccCCCccCCCCCCCHHHHHHHHHHhchhH
Confidence 8998755567777777778899999999986543
No 303
>PF14421 LmjF365940-deam: A distinct subfamily of CDD/CDA-like deaminases
Probab=23.05 E-value=91 Score=25.30 Aligned_cols=29 Identities=17% Similarity=0.405 Sum_probs=21.1
Q ss_pred CChhhHhhhHHHHHHHHHCCCeEEEEEECCCC
Q 026887 123 WCASCRALFPKLCRTAEEHPEIVFLKVNFDEN 154 (231)
Q Consensus 123 wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~ 154 (231)
=|+.|+++. .++++..+++.++..|-...
T Consensus 156 PCGaC~ewL---~KIAe~np~f~v~mFd~t~c 184 (193)
T PF14421_consen 156 PCGACKEWL---RKIAEANPDFRVYMFDDTRC 184 (193)
T ss_pred cchHHHHHH---HHHHHhCCCeEEEEecCCCc
Confidence 399998866 45555778899888876643
No 304
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=22.91 E-value=2.1e+02 Score=24.00 Aligned_cols=60 Identities=15% Similarity=0.237 Sum_probs=38.4
Q ss_pred CCeEEEEEE----cCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCCHHHHHHCC-CCCCCEEE-EEECCC
Q 026887 112 DRLVIVEFY----GTWCASCRALFPKLCRTAEEHPEIVFLKVNFDENKPMCKSLN-VKVLPYFH-FYRGAH 176 (231)
Q Consensus 112 ~k~vlv~F~----a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~~~l~~~~~-i~~~Pt~~-~~~~g~ 176 (231)
.++|++.-= .|-||-.+.....+... ++.+...|+-.++++.+..+ ...+||+= +|-+|.
T Consensus 138 a~~v~lFmKG~p~~P~CGFS~~~v~iL~~~-----nV~~~~fdIL~DeelRqglK~fSdWPTfPQlyI~GE 203 (227)
T KOG0911|consen 138 AKPVMLFMKGTPEEPKCGFSRQLVGILQSH-----NVNYTIFDVLTDEELRQGLKEFSDWPTFPQLYVKGE 203 (227)
T ss_pred cCeEEEEecCCCCcccccccHHHHHHHHHc-----CCCeeEEeccCCHHHHHHhhhhcCCCCccceeECCE
Confidence 455665443 35677777766655544 66688889888888766554 34577753 666765
No 305
>cd03053 GST_N_Phi GST_N family, Class Phi subfamily; composed of plant-specific class Phi GSTs and related fungal and bacterial proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Phi GST subfamily has experience extensive gene duplication. The Arabidopsis and Oryza genomes contain 13 and 16 Phi GSTs, respectively. They are primarily responsible for herbicide detoxification together with class Tau GSTs, showing class specificity in substrate preference. Phi enzymes are highly reactive toward chloroacetanilide and thiocarbamate herbicides. Some Phi GSTs have other functions including t
Probab=21.61 E-value=2.3e+02 Score=18.18 Aligned_cols=52 Identities=8% Similarity=0.104 Sum_probs=32.1
Q ss_pred EEEEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECC----CCHHHHHHCCCCCCCEEE
Q 026887 116 IVEFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFD----ENKPMCKSLNVKVLPYFH 170 (231)
Q Consensus 116 lv~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d----~~~~l~~~~~i~~~Pt~~ 170 (231)
+..|+.+.|+.|++..-.+++..- .+....++.. ..+++.+..-...+|++.
T Consensus 2 ~~Ly~~~~s~~s~~v~~~l~~~~i---~~~~~~~~~~~~~~~~~~~~~~~P~~~vP~l~ 57 (76)
T cd03053 2 LKLYGAAMSTCVRRVLLCLEEKGV---DYELVPVDLTKGEHKSPEHLARNPFGQIPALE 57 (76)
T ss_pred eEEEeCCCChhHHHHHHHHHHcCC---CcEEEEeCccccccCCHHHHhhCCCCCCCEEE
Confidence 344556679999987766665422 2455555543 124566666677899874
No 306
>KOG2990 consensus C2C2-type Zn-finger protein [Function unknown]
Probab=21.30 E-value=1.3e+02 Score=26.19 Aligned_cols=31 Identities=19% Similarity=0.700 Sum_probs=20.2
Q ss_pred HHHHHHHhcCCCeEEEEE---EcCCChhhHhhhH
Q 026887 102 EFLEALSQAGDRLVIVEF---YGTWCASCRALFP 132 (231)
Q Consensus 102 ~~~~~l~~~~~k~vlv~F---~a~wC~~C~~~~p 132 (231)
.+.+.-........||-| |.-||.-|+.+..
T Consensus 30 ~lrerarKi~~gilvIRFEMPynIWC~gC~nhIg 63 (317)
T KOG2990|consen 30 ALRERARKIDQGILVIRFEMPYNIWCDGCKNHIG 63 (317)
T ss_pred hHHHHHHhhccceEEEEEecccchhhccHHHhhh
Confidence 333333333356778888 5679999998754
No 307
>KOG1364 consensus Predicted ubiquitin regulatory protein, contains UAS and UBX domains [Posttranslational modification, protein turnover, chaperones]
Probab=20.91 E-value=1.4e+02 Score=26.73 Aligned_cols=56 Identities=9% Similarity=0.102 Sum_probs=38.0
Q ss_pred EEEEECCCCHHHHHHCCCCCCCEEEEEECCCceEEEEecCccCHHHHHHHHHHhhc
Q 026887 146 FLKVNFDENKPMCKSLNVKVLPYFHFYRGAHGQLESFSCSLAKFQKIKEAIALHNT 201 (231)
Q Consensus 146 ~~~Vd~d~~~~l~~~~~i~~~Pt~~~~~~g~~~~~~~~g~~~~~~~l~~~l~~~~~ 201 (231)
.+..|..+...+..-|.+..+|.+.+++.-.|+-.....+...+++|..-+++++.
T Consensus 135 lV~~Dtseg~~~~~Fy~~~~~P~i~iiDp~Tge~v~~ws~vi~~~~fl~~l~~Fi~ 190 (356)
T KOG1364|consen 135 LVLDDTSEGQPFSAFYHISSLPHIAIIDPITGERVKRWSGVIEPEQFLSDLNEFID 190 (356)
T ss_pred EEeeccCCCCchhhheeccCCceEEEECCchhhhhhhhccccCHHHHHHHHHHHHh
Confidence 33455556677888999999998888877555443333233447888777777764
No 308
>COG2761 FrnE Predicted dithiol-disulfide isomerase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=20.73 E-value=2.5e+02 Score=23.59 Aligned_cols=31 Identities=16% Similarity=0.331 Sum_probs=25.1
Q ss_pred CeEEEEEEcC-CChhhHhhhHHHHHHHHHCCC
Q 026887 113 RLVIVEFYGT-WCASCRALFPKLCRTAEEHPE 143 (231)
Q Consensus 113 k~vlv~F~a~-wC~~C~~~~p~l~~l~~~~~~ 143 (231)
..+-|++|++ -||-|-.-.+.|+++..++++
T Consensus 4 ~~i~I~v~sD~vCPwC~ig~~rL~ka~~~~~~ 35 (225)
T COG2761 4 MKIEIDVFSDVVCPWCYIGKRRLEKALAEYPQ 35 (225)
T ss_pred ceEEEEEEeCCcCchhhcCHHHHHHHHHhcCc
Confidence 4455666655 699999999999999999885
No 309
>COG4822 CbiK Cobalamin biosynthesis protein CbiK, Co2+ chelatase [Coenzyme metabolism]
Probab=20.49 E-value=1.5e+02 Score=24.89 Aligned_cols=84 Identities=15% Similarity=0.239 Sum_probs=52.0
Q ss_pred CCeEEEEEEcCCChhhHhhhHHHH-HHHHHCCCeEEE----------------EEECCCCHHHHHHCCCCCCCEEEEEEC
Q 026887 112 DRLVIVEFYGTWCASCRALFPKLC-RTAEEHPEIVFL----------------KVNFDENKPMCKSLNVKVLPYFHFYRG 174 (231)
Q Consensus 112 ~k~vlv~F~a~wC~~C~~~~p~l~-~l~~~~~~v~~~----------------~Vd~d~~~~l~~~~~i~~~Pt~~~~~~ 174 (231)
+...+|.|.+++-..|..--..++ ++++++|+..+. .+|++.-....+++.-+|+--+++
T Consensus 3 KailiVsFGTty~dtre~tIda~e~~va~efpDydvfrAfTS~kIIkkLK~rdgi~~dTP~~aL~klk~~gy~evii--- 79 (265)
T COG4822 3 KAILIVSFGTTYNDTRELTIDAIEEKVADEFPDYDVFRAFTSRKIIKKLKERDGIDFDTPIQALNKLKDQGYEEVII--- 79 (265)
T ss_pred ceEEEEEcCCccchhHHhhHHHHHHHHHHhCccHHHHHHHhHHHHHHHHHhhcCcccCCHHHHHHHHHHccchheee---
Confidence 457889999999888877665554 688888873321 455565445555665566554443
Q ss_pred CCceEEEEecCccCHHHHHHHHHHhhcC
Q 026887 175 AHGQLESFSCSLAKFQKIKEAIALHNTD 202 (231)
Q Consensus 175 g~~~~~~~~g~~~~~~~l~~~l~~~~~~ 202 (231)
..+..+.| ...+.|...++++...
T Consensus 80 --Q~lhiIpG--~EyEklvr~V~~~~~d 103 (265)
T COG4822 80 --QPLHIIPG--IEYEKLVREVNKYSND 103 (265)
T ss_pred --eeeeecCc--hHHHHHHHHHHHHhhh
Confidence 13333344 4567777777766543
No 310
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=20.34 E-value=2.3e+02 Score=17.61 Aligned_cols=34 Identities=21% Similarity=0.473 Sum_probs=25.9
Q ss_pred EEEcCCChhhHhhhHHHHHHHHHCCCeEEEEEECCCC
Q 026887 118 EFYGTWCASCRALFPKLCRTAEEHPEIVFLKVNFDEN 154 (231)
Q Consensus 118 ~F~a~wC~~C~~~~p~l~~l~~~~~~v~~~~Vd~d~~ 154 (231)
....=.|..|.. .+++.....+++.-+.+|...+
T Consensus 3 ~v~~m~C~~C~~---~v~~~l~~~~GV~~v~vd~~~~ 36 (62)
T PF00403_consen 3 KVPGMTCEGCAK---KVEKALSKLPGVKSVKVDLETK 36 (62)
T ss_dssp EEESTTSHHHHH---HHHHHHHTSTTEEEEEEETTTT
T ss_pred EECCcccHHHHH---HHHHHHhcCCCCcEEEEECCCC
Confidence 344567999976 5677777789999999998764
Done!