Query 026889
Match_columns 231
No_of_seqs 176 out of 1561
Neff 6.9
Searched_HMMs 29240
Date Tue Mar 26 00:43:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026889.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026889hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4a2n_B Isoprenylcysteine carbo 99.9 1.7E-26 6E-31 193.4 19.3 116 75-200 74-193 (194)
2 3r5y_A Putative uncharacterize 73.0 2 6.8E-05 33.6 2.6 22 176-200 121-142 (147)
3 3r5z_A Putative uncharacterize 67.2 3.2 0.00011 32.4 2.6 22 176-200 119-140 (145)
4 3h96_A F420-H2 dependent reduc 66.7 3.3 0.00011 32.2 2.6 22 176-200 115-138 (143)
5 3r5l_A Deazaflavin-dependent n 64.3 1 3.4E-05 34.2 -0.8 21 176-199 97-117 (122)
6 2l9u_A Receptor tyrosine-prote 20.6 1.3E+02 0.0044 17.6 3.4 25 4-28 10-34 (40)
7 1vk5_A Expressed protein; stru 17.6 34 0.0012 26.3 0.5 19 173-194 35-53 (157)
8 2ket_A Cathelicidin-6; antimic 11.3 1.2E+02 0.004 16.2 1.4 12 34-45 2-13 (27)
9 3ctd_A Putative ATPase, AAA fa 9.8 1.4E+02 0.0047 24.6 2.1 21 19-39 54-74 (213)
10 3bge_A Predicted ATPase; struc 9.5 1.4E+02 0.0049 24.2 2.1 21 19-39 26-46 (201)
No 1
>4a2n_B Isoprenylcysteine carboxyl methyltransferase; membrane protein, RAS and RHO gtpases signallin; HET: SAH PLM CDL; 3.40A {Methanosarcina acetivorans}
Probab=99.95 E-value=1.7e-26 Score=193.38 Aligned_cols=116 Identities=19% Similarity=0.287 Sum_probs=93.3
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHHhc-CC--CCCCCCccccccccccccCcchHHHHHHHHHHHHHhccccCchhHH
Q 026889 75 VQAVDVIGWIMWSVGVSIEAIADQQKLSF-KN--SPENRGKWCNVGFWKYSRHPNYFGEIFLWWGIFVASTPVLDGAEWL 151 (231)
Q Consensus 75 ~~~~~~~g~~l~~~G~~le~~Ad~ql~~f-~~--~~~~~~~li~~Gly~~~RHPnY~geil~w~g~~l~~~~~~~g~~w~ 151 (231)
..+..++|.+++++|+.++.+|+.|++++ +. +++++++++++|+|++||||||+|+++.|+|+++... +++
T Consensus 74 p~~~~~~G~~l~l~G~~l~~~a~~~Lg~~f~~~~~~~~~~~Lvt~G~y~~vRHP~Y~G~~l~~~g~~l~~~------s~~ 147 (194)
T 4a2n_B 74 PDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILS------NWV 147 (194)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHGGGCCSSCCEETTCCCCCSSTTTTBSSHHHHHHHHHHHHHHHHHT------CHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccCCCCCCCCeeeecCcchhccCccHHHHHHHHHHHHHHhc------cHH
Confidence 45688999999999999999999999654 43 3456788999999999999999999999999988752 233
Q ss_pred HHH-HHHHHHHHHHHHhCcHHHHHHHHhHcCCchHHHHHHhhCCCccccC
Q 026889 152 VIL-GPIFLTLLLLFISGIPLLEESADKKFGNMPAYRLYKKTTSPLIPLP 200 (231)
Q Consensus 152 ~~~-~~i~~~~ll~~~~~i~~eE~~l~~k~G~~~~Y~~Y~~~t~~~iP~~ 200 (231)
+++ ++++.+++ +..+++.||+.+.++|| ++|++|+++||++||++
T Consensus 148 ~~~~~~~~~~~~--~~~ri~~EE~~L~~~fG--~~Y~~Y~~rv~r~iP~i 193 (194)
T 4a2n_B 148 VLIFGIVAWAIL--YFIRVPKEEELLIEEFG--DEYIEYMGKTGRLFPKV 193 (194)
T ss_dssp HHHHHHHHHHHH--HHHHHHHHHHHHHHHHT--HHHHHHHHHCBSSSCC-
T ss_pred HHHHHHHHHHHH--HHHHHHHHHHHHHHHhC--HHHHHHHHhCCeeCcee
Confidence 333 33332222 23468999999999999 99999999999999985
No 2
>3r5y_A Putative uncharacterized protein; PA-824, nitroimidazoles, split barrel-like fold, DUF385, DEA dependent nitroreductase, unknown function; HET: F42; 1.80A {Nocardia farcinica}
Probab=72.96 E-value=2 Score=33.63 Aligned_cols=22 Identities=36% Similarity=0.733 Sum_probs=18.3
Q ss_pred HHhHcCCchHHHHHHhhCCCccccC
Q 026889 176 ADKKFGNMPAYRLYKKTTSPLIPLP 200 (231)
Q Consensus 176 l~~k~G~~~~Y~~Y~~~t~~~iP~~ 200 (231)
+.++| |+|.+||++|.|-||-+
T Consensus 121 ~~~~~---P~y~~Yq~~t~R~IPv~ 142 (147)
T 3r5y_A 121 AVRAY---PTYQEYQDNTRRLIPVL 142 (147)
T ss_dssp HHHHC---THHHHHHHTCSSCCCEE
T ss_pred HHHHC---CCHHHHHhhcCCcCcEE
Confidence 55677 89999999999998843
No 3
>3r5z_A Putative uncharacterized protein; split barrel-like fold, DUF385, deazaflavin-dependent reduct F420-dependent reductase, FDR; HET: F42; 1.50A {Nocardia farcinica}
Probab=67.16 E-value=3.2 Score=32.36 Aligned_cols=22 Identities=32% Similarity=0.511 Sum_probs=18.2
Q ss_pred HHhHcCCchHHHHHHhhCCCccccC
Q 026889 176 ADKKFGNMPAYRLYKKTTSPLIPLP 200 (231)
Q Consensus 176 l~~k~G~~~~Y~~Y~~~t~~~iP~~ 200 (231)
+.++| |.|.+|+++|.+-||-+
T Consensus 119 ~~~~~---p~y~~Yq~~t~R~iPv~ 140 (145)
T 3r5z_A 119 AVEVW---PDYAEYQTKTTREIPVF 140 (145)
T ss_dssp HHHHC---THHHHHGGGCSSCCCEE
T ss_pred HHHHC---cCHHHHHHhcCCcCceE
Confidence 45667 89999999999988843
No 4
>3h96_A F420-H2 dependent reductase A; pnpox, flavin, aflatoxin, flavoprotein; 2.00A {Mycobacterium smegmatis str}
Probab=66.72 E-value=3.3 Score=32.19 Aligned_cols=22 Identities=27% Similarity=0.658 Sum_probs=18.2
Q ss_pred HHhHcCCchHHHHHHhhCC--CccccC
Q 026889 176 ADKKFGNMPAYRLYKKTTS--PLIPLP 200 (231)
Q Consensus 176 l~~k~G~~~~Y~~Y~~~t~--~~iP~~ 200 (231)
+.++| |.|++|+++|. +-||-+
T Consensus 115 ~~~~~---P~y~~Yq~~t~~~R~iPv~ 138 (143)
T 3h96_A 115 QARRY---PGFADYEKKTAGIRTIPVL 138 (143)
T ss_dssp HHHHC---THHHHHHHHTTTTCCCCEE
T ss_pred HHHHC---cCHHHHHHhcCCCCcccEE
Confidence 45677 89999999999 988843
No 5
>3r5l_A Deazaflavin-dependent nitroreductase; PA-824, split barrel-like fold, DUF385, deazaflavin-dependen nitroreductase, nitroimidazoles; HET: MES; 1.55A {Mycobacterium tuberculosis} PDB: 3r5p_A 3r5w_A* 3r5r_A*
Probab=64.30 E-value=1 Score=34.17 Aligned_cols=21 Identities=29% Similarity=0.553 Sum_probs=18.1
Q ss_pred HHhHcCCchHHHHHHhhCCCcccc
Q 026889 176 ADKKFGNMPAYRLYKKTTSPLIPL 199 (231)
Q Consensus 176 l~~k~G~~~~Y~~Y~~~t~~~iP~ 199 (231)
+.++| |+|++|+++|.+-||-
T Consensus 97 ~~~~~---p~y~~yq~~t~R~ipv 117 (122)
T 3r5l_A 97 LVTMY---PSYQDYQSWTDRTIPI 117 (122)
T ss_dssp HHHHC---TTCCCTTGGGCTTSCE
T ss_pred HHHHC---cCHHHHHhhcCCcccE
Confidence 56778 8999999999998884
No 6
>2l9u_A Receptor tyrosine-protein kinase ERBB-3; transmenbrane dimer, membrane protein, EGFR; NMR {Homo sapiens}
Probab=20.63 E-value=1.3e+02 Score=17.57 Aligned_cols=25 Identities=16% Similarity=0.149 Sum_probs=19.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhcC
Q 026889 4 ITTLLCFICDFTLLTLLMFLTRILN 28 (231)
Q Consensus 4 ~~~~~~~~~~w~~RL~~~l~~R~~~ 28 (231)
.|.+.+++.+.-.-=+.||++|..+
T Consensus 10 lt~i~gl~vif~~lg~tflywrgrr 34 (40)
T 2l9u_A 10 LTVIAGLVVIFMMLGGTFLYWRGRR 34 (40)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCceeEEEcccc
Confidence 5667778888777777899988765
No 7
>1vk5_A Expressed protein; structural genomics, unknown function, protein structur initiative, center for eukaryotic structural genomics, CESG; HET: CPS; 1.60A {Arabidopsis thaliana} SCOP: a.220.1.1 PDB: 2q3t_A* 3gan_A*
Probab=17.65 E-value=34 Score=26.31 Aligned_cols=19 Identities=26% Similarity=0.300 Sum_probs=13.5
Q ss_pred HHHHHhHcCCchHHHHHHhhCC
Q 026889 173 EESADKKFGNMPAYRLYKKTTS 194 (231)
Q Consensus 173 E~~l~~k~G~~~~Y~~Y~~~t~ 194 (231)
|..+.+|= +-|++|+|+.|
T Consensus 35 e~~liRrA---EmYQ~YMK~iP 53 (157)
T 1vk5_A 35 EGSLLRRA---EMYQDYMKQVP 53 (157)
T ss_dssp -CTTHHHH---HHHHHHHHTSC
T ss_pred chhhhhHH---HHHHHHHHhCC
Confidence 44455552 89999999976
No 8
>2ket_A Cathelicidin-6; antimicrobial peptide, antibiotic, antimicrobial, fungicide, pyrrolidone carboxylic acid, secreted; NMR {Bos taurus}
Probab=11.27 E-value=1.2e+02 Score=16.16 Aligned_cols=12 Identities=42% Similarity=0.775 Sum_probs=8.5
Q ss_pred hhHHHHhhhhhH
Q 026889 34 RFDEMRSNLGKL 45 (231)
Q Consensus 34 R~~~~r~~~~~~ 45 (231)
||+.+|++++++
T Consensus 2 rfkrfrkkfkkl 13 (27)
T 2ket_A 2 RFKRFRKKFKKL 13 (27)
T ss_dssp CHHHHHHHHHHH
T ss_pred cHHHHHHHHHHH
Confidence 677788876654
No 9
>3ctd_A Putative ATPase, AAA family; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Prochlorococcus marinus subsp} SCOP: a.80.1.2
Probab=9.83 E-value=1.4e+02 Score=24.57 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=16.5
Q ss_pred HHHHHHhhcCcccchhhHHHH
Q 026889 19 LLMFLTRILNWGEDRRFDEMR 39 (231)
Q Consensus 19 ~~~l~~R~~~~geD~R~~~~r 39 (231)
+.|.+.|.+..|||.+|-..|
T Consensus 54 ALywLaRMl~~GEDp~~IaRR 74 (213)
T 3ctd_A 54 TLYWLANMVEAGEDPNFIFRR 74 (213)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 367778889999998877555
No 10
>3bge_A Predicted ATPase; structural genomics, predicted AAA+ATPase C-terminal fragmen protein structure initiative; 1.85A {Haemophilus influenzae} SCOP: a.80.1.2
Probab=9.50 E-value=1.4e+02 Score=24.21 Aligned_cols=21 Identities=33% Similarity=0.461 Sum_probs=16.4
Q ss_pred HHHHHHhhcCcccchhhHHHH
Q 026889 19 LLMFLTRILNWGEDRRFDEMR 39 (231)
Q Consensus 19 ~~~l~~R~~~~geD~R~~~~r 39 (231)
+.|.+.|.+..|||.+|-..|
T Consensus 26 Aly~LaRMl~~GEDp~~IaRR 46 (201)
T 3bge_A 26 ALYWYARILTAGGDPLYVARR 46 (201)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHH
Confidence 367778889999998877555
Done!