Query 026889
Match_columns 231
No_of_seqs 176 out of 1561
Neff 6.9
Searched_HMMs 13730
Date Tue Mar 26 00:43:34 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026889.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026889hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1e7la1 a.140.4.1 (A:104-157) 31.0 11 0.00081 22.7 1.7 12 124-135 2-13 (54)
2 d1rgoa2 g.66.1.1 (A:187-220) B 26.7 7.6 0.00055 21.2 0.3 11 122-132 1-11 (34)
3 d3ctda1 a.80.1.2 (A:258-420) U 15.6 34 0.0025 25.1 2.1 21 19-39 21-41 (163)
4 d1vk5a_ a.220.1.1 (A:) Hypothe 15.1 32 0.0023 23.7 1.6 11 184-194 8-18 (121)
5 d3bgea1 a.80.1.2 (A:251-434) U 9.5 68 0.005 23.8 2.1 20 20-39 24-43 (184)
6 d1eysh2 f.23.10.1 (H:7-43) Pho 8.1 1.3E+02 0.0097 16.2 2.4 11 10-20 7-17 (37)
7 d2p06a1 a.204.1.3 (A:1-84) Hyp 7.6 1E+02 0.0076 18.9 2.0 20 170-195 5-24 (84)
8 d1v8ha1 b.1.18.19 (A:2-107) Su 7.4 32 0.0023 23.3 -0.7 13 118-130 21-33 (106)
9 d1ytqa2 b.11.1.1 (A:104-194) b 6.3 33 0.0024 22.4 -1.1 19 113-131 41-59 (91)
10 d1okia2 b.11.1.1 (A:145-236) b 5.9 33 0.0024 22.4 -1.3 19 113-131 42-60 (92)
No 1
>d1e7la1 a.140.4.1 (A:104-157) Recombination endonuclease VII, C-terminal and dimerization domains {Bacteriophage T4 [TaxId: 10665]}
Probab=31.02 E-value=11 Score=22.66 Aligned_cols=12 Identities=33% Similarity=0.673 Sum_probs=10.2
Q ss_pred CcchHHHHHHHH
Q 026889 124 HPNYFGEIFLWW 135 (231)
Q Consensus 124 HPnY~geil~w~ 135 (231)
||||.++..=|+
T Consensus 2 Hp~~~~D~~K~F 13 (54)
T d1e7la1 2 HPNFVGDKSKEF 13 (54)
T ss_dssp CTHHHHHHHHHH
T ss_pred CcchhhHHHHHH
Confidence 999999987664
No 2
>d1rgoa2 g.66.1.1 (A:187-220) Butyrate response factor 2 (Tis11D) {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.71 E-value=7.6 Score=21.21 Aligned_cols=11 Identities=45% Similarity=0.896 Sum_probs=7.4
Q ss_pred ccCcchHHHHH
Q 026889 122 SRHPNYFGEIF 132 (231)
Q Consensus 122 ~RHPnY~geil 132 (231)
+|||.|--++.
T Consensus 1 ~rhpkyKT~lC 11 (34)
T d1rgoa2 1 TRHPKYKTELC 11 (34)
T ss_dssp CCCTTTTCSBC
T ss_pred CCCCCccchhc
Confidence 58888865543
No 3
>d3ctda1 a.80.1.2 (A:258-420) Uncharacterized protein YrvN {Prochlorococcus marinus [TaxId: 1219]}
Probab=15.57 E-value=34 Score=25.06 Aligned_cols=21 Identities=33% Similarity=0.464 Sum_probs=16.3
Q ss_pred HHHHHHhhcCcccchhhHHHH
Q 026889 19 LLMFLTRILNWGEDRRFDEMR 39 (231)
Q Consensus 19 ~~~l~~R~~~~geD~R~~~~r 39 (231)
+.|.+.|.+..|||.+|-..|
T Consensus 21 Aly~larml~~Gedp~~i~RR 41 (163)
T d3ctda1 21 TLYWLANMVEAGEDPNFIFRR 41 (163)
T ss_dssp HHHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHHcCCchHHHHHH
Confidence 357778999999998876544
No 4
>d1vk5a_ a.220.1.1 (A:) Hypothetical protein At3g22680 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=15.12 E-value=32 Score=23.65 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=9.9
Q ss_pred hHHHHHHhhCC
Q 026889 184 PAYRLYKKTTS 194 (231)
Q Consensus 184 ~~Y~~Y~~~t~ 194 (231)
+.|++|+|+.|
T Consensus 8 emYQ~yMk~iP 18 (121)
T d1vk5a_ 8 EMYQDYMKQVP 18 (121)
T ss_dssp HHHHHHHHTSC
T ss_pred HHHHHHHHhCC
Confidence 78999999976
No 5
>d3bgea1 a.80.1.2 (A:251-434) Uncharacterized protein NTHI1458 {Haemophilus influenzae [TaxId: 727]}
Probab=9.46 E-value=68 Score=23.77 Aligned_cols=20 Identities=35% Similarity=0.504 Sum_probs=15.5
Q ss_pred HHHHHhhcCcccchhhHHHH
Q 026889 20 LMFLTRILNWGEDRRFDEMR 39 (231)
Q Consensus 20 ~~l~~R~~~~geD~R~~~~r 39 (231)
.|.+.|.+..|||.+|-..|
T Consensus 24 ly~larml~~GeDp~~i~RR 43 (184)
T d3bgea1 24 LYWYARILTAGGDPLYVARR 43 (184)
T ss_dssp HHHHHHHHHTTCCHHHHHHH
T ss_pred HHHHHHHHHcCCChHHHHHH
Confidence 56678999999998866544
No 6
>d1eysh2 f.23.10.1 (H:7-43) Photosystem II reaction centre subunit H, transmembrane region {Thermochromatium tepidum [TaxId: 1050]}
Probab=8.06 E-value=1.3e+02 Score=16.20 Aligned_cols=11 Identities=9% Similarity=0.163 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q 026889 10 FICDFTLLTLL 20 (231)
Q Consensus 10 ~~~~w~~RL~~ 20 (231)
.+.+|+..+..
T Consensus 7 ql~ly~Fw~FF 17 (37)
T d1eysh2 7 QITIWAFWLFF 17 (37)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 34455555443
No 7
>d2p06a1 a.204.1.3 (A:1-84) Hypothetical protein AF0060 {Archaeoglobus fulgidus [TaxId: 2234]}
Probab=7.64 E-value=1e+02 Score=18.91 Aligned_cols=20 Identities=25% Similarity=0.170 Sum_probs=13.5
Q ss_pred HHHHHHHHhHcCCchHHHHHHhhCCC
Q 026889 170 PLLEESADKKFGNMPAYRLYKKTTSP 195 (231)
Q Consensus 170 ~~eE~~l~~k~G~~~~Y~~Y~~~t~~ 195 (231)
++.|+-+.+-+ .+|++++++
T Consensus 5 rlaekflremh------akymkrvsr 24 (84)
T d2p06a1 5 RLAEKFLREMH------AKYMKRVSR 24 (84)
T ss_dssp HHHHHHHHHHH------HHHHHHHTS
T ss_pred HHHHHHHHHHH------HHHHHHccC
Confidence 45676666555 788888863
No 8
>d1v8ha1 b.1.18.19 (A:2-107) Sulfur oxidation protein SoxZ {Thermus thermophilus [TaxId: 274]}
Probab=7.43 E-value=32 Score=23.29 Aligned_cols=13 Identities=31% Similarity=0.424 Sum_probs=9.4
Q ss_pred ccccccCcchHHH
Q 026889 118 FWKYSRHPNYFGE 130 (231)
Q Consensus 118 ly~~~RHPnY~ge 130 (231)
+=-.++|||..|.
T Consensus 21 vk~li~HPMeTG~ 33 (106)
T d1v8ha1 21 LQVVAQHPNEPGT 33 (106)
T ss_dssp EEEEECCCCBCSC
T ss_pred EEEEEECCCcccc
Confidence 3357889998873
No 9
>d1ytqa2 b.11.1.1 (A:104-194) beta-Crystallin {Cow (Bos taurus) [TaxId: 9913]}
Probab=6.26 E-value=33 Score=22.36 Aligned_cols=19 Identities=26% Similarity=0.403 Sum_probs=16.4
Q ss_pred cccccccccccCcchHHHH
Q 026889 113 WCNVGFWKYSRHPNYFGEI 131 (231)
Q Consensus 113 li~~Gly~~~RHPnY~gei 131 (231)
-+.+|.|-.--||||.|..
T Consensus 41 ~V~~G~Wv~Ye~~nf~G~~ 59 (91)
T d1ytqa2 41 RVQSGTWVGYQYPGYRGLQ 59 (91)
T ss_dssp EECSSCEEEEEETTTEEEE
T ss_pred EecCCCEEEEecCCcEEEE
Confidence 4778999999999999864
No 10
>d1okia2 b.11.1.1 (A:145-236) beta-Crystallin {Human (Homo sapiens) [TaxId: 9606]}
Probab=5.94 E-value=33 Score=22.37 Aligned_cols=19 Identities=26% Similarity=0.375 Sum_probs=16.4
Q ss_pred cccccccccccCcchHHHH
Q 026889 113 WCNVGFWKYSRHPNYFGEI 131 (231)
Q Consensus 113 li~~Gly~~~RHPnY~gei 131 (231)
-|..|.|-..-||||-|..
T Consensus 42 ~V~~G~Wv~ye~~nf~G~~ 60 (92)
T d1okia2 42 KVSSGTWVGYQYPGYRGYQ 60 (92)
T ss_dssp EEEESEEEEEEETTTEEEE
T ss_pred EEeCCCEEEEECCCCEEEE
Confidence 5788999999999998863
Done!