BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026890
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3CQN|A Chain A, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph7
pdb|3CQN|B Chain B, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph7
pdb|3CQR|A Chain A, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph5
pdb|3CQR|B Chain B, Crystal Structure Of The Lipocalin Domain Of Violaxanthin
De-Epoxidase (Vde) At Ph5
Length = 185
Score = 29.6 bits (65), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 4/45 (8%)
Query: 127 DDWPLMKSKWEDGTTPLPEGVIFVEQLKEEDAADDSGGESEITRA 171
DDW ++ SK E+ PE IFV DA D GG TR+
Sbjct: 101 DDWYILSSKIENK----PEDYIFVYYRGRNDAWDGYGGAVVYTRS 141
>pdb|2WBI|A Chain A, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
pdb|2WBI|B Chain B, Crystal Structure Of Human Acyl-Coa Dehydrogenase 11
Length = 428
Score = 28.5 bits (62), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 33/71 (46%)
Query: 46 ENRKCQAMPISISSSRADIDLVEPKRKQERSVSTENVIDKWMKDSVVEIVKNLRETPLLV 105
+ RK Q + I + L K E V EN +DKW K V++ +K + + L
Sbjct: 23 QTRKGQEVLIKVKHFMKQHILPAEKEVTEFYVQNENSVDKWGKPLVIDKLKEMAKVEGLW 82
Query: 106 HVYSDSGSGDS 116
+++ + SG S
Sbjct: 83 NLFLPAVSGLS 93
>pdb|3SZR|A Chain A, Crystal Structure Of Modified Nucleotide-Free Human Mxa
Length = 608
Score = 27.3 bits (59), Expect = 7.2, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 32 RYPTASLNVTPAMSENRKCQAMPISISSSRADIDLVEPKRKQERSVSTE-NVIDKWMKDS 90
R T SL V P+ + +A+ ++ V+P+ + + T+ +++DK +D
Sbjct: 183 RQETISLVVVPSNVDIATTEALSMAQE--------VDPEGDRTIGILTKPDLVDKGTEDK 234
Query: 91 VVEIVKN----LRETPLLVHVYSDSGSGD----STRLKTEKAVPDDWPLMKSKWEDGTTP 142
VV++V+N L++ ++V D S L+ EK ++ P + E+G
Sbjct: 235 VVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKAT 294
Query: 143 LP 144
+P
Sbjct: 295 VP 296
>pdb|3ZYS|B Chain B, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
pdb|3ZYS|E Chain E, Human Dynamin 1 Deltaprd Polymer Stabilized With Gmppcp
Length = 662
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 28/122 (22%), Positives = 56/122 (45%), Gaps = 17/122 (13%)
Query: 32 RYPTASLNVTPAMSENRKCQAMPISISSSRADIDLVEPKRKQERSVSTE-NVIDKWMKDS 90
R T SL V P+ + +A+ ++ V+P+ + + T+ +++DK +D
Sbjct: 208 RQETISLVVVPSNVDIATTEALSMAQE--------VDPEGDRTIGILTKPDLVDKGTEDK 259
Query: 91 VVEIVKN----LRETPLLVHVYSDSGSGD----STRLKTEKAVPDDWPLMKSKWEDGTTP 142
VV++V+N L++ ++V D S L+ EK ++ P + E+G
Sbjct: 260 VVDVVRNLVFHLKKGYMIVKCRGQQEIQDQLSLSEALQREKIFFENHPYFRDLLEEGKAT 319
Query: 143 LP 144
+P
Sbjct: 320 VP 321
>pdb|3HPS|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPS|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Ketoisocaproate (Kic)
pdb|3HPZ|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HPZ|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Bromopyruvate
pdb|3HQ1|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
pdb|3HQ1|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis Leua
Complexed With Citrate And Mn2+
Length = 644
Score = 26.9 bits (58), Expect = 8.9, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 150 VEQLKEE-DAADDSGGESEIT---RAWGILVQAKGEGCGP 185
+E++++ DAADD GG + IT + G+ + G G GP
Sbjct: 495 LERIRQHVDAADDDGGTTSITATVKINGVETEISGSGNGP 534
>pdb|3FIG|A Chain A, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
pdb|3FIG|B Chain B, Crystal Structure Of Leucine-bound Leua From Mycobacterium
Tuberculosis
Length = 646
Score = 26.9 bits (58), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 4/40 (10%)
Query: 150 VEQLKEE-DAADDSGGESEIT---RAWGILVQAKGEGCGP 185
+E++++ DAADD GG + IT + G+ + G G GP
Sbjct: 497 LERIRQHVDAADDDGGTTSITATVKINGVETEISGSGNGP 536
>pdb|1SR9|A Chain A, Crystal Structure Of Leua From Mycobacterium Tuberculosis
pdb|1SR9|B Chain B, Crystal Structure Of Leua From Mycobacterium Tuberculosis
Length = 644
Score = 26.9 bits (58), Expect = 9.9, Method: Compositional matrix adjust.
Identities = 15/46 (32%), Positives = 25/46 (54%), Gaps = 4/46 (8%)
Query: 150 VEQLKEE-DAADDSGGESEIT---RAWGILVQAKGEGCGPACYLLK 191
+E++++ DAADD GG + IT + G+ + G G GP +
Sbjct: 495 LERIRQHVDAADDDGGTTSITATVKINGVETEISGSGNGPLAAFVH 540
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.315 0.131 0.393
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,453,742
Number of Sequences: 62578
Number of extensions: 265223
Number of successful extensions: 641
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 635
Number of HSP's gapped (non-prelim): 13
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.9 bits)