BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026890
         (231 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P24004|PEX1_YEAST Peroxisomal ATPase PEX1 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=PEX1 PE=1 SV=2
          Length = 1043

 Score = 35.0 bits (79), Expect = 0.42,   Method: Compositional matrix adjust.
 Identities = 44/176 (25%), Positives = 77/176 (43%), Gaps = 30/176 (17%)

Query: 31  IRYPTASLNVTPAMSENRKCQAMPISISSSRADIDLVEPKRKQERSVSTENVIDKWMKDS 90
           +R P + +NV    S N   Q   I++ S  +DI +V        S S+ENV+   + + 
Sbjct: 25  LRLPHSIINVLE--STNYAIQEFGIAVHSHNSDIPIVHLGWDGHDSGSSENVV---LINP 79

Query: 91  VVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEKAV----PDDWPLMKS---KWEDGTTPL 143
           V+  V +L +   LV +Y      D T L TE  V     DDW ++ +   ++++G    
Sbjct: 80  VLATVYDLNQKSPLVDLYIQ--RYDHTHLATEVYVTPETSDDWEIIDANAMRFQNGEILH 137

Query: 144 PEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACYLLKTSRAGAGS 199
              ++             + GE+ I    GI+ + K +   P+   +K++R   GS
Sbjct: 138 QTRIV-------------TPGETLICYLEGIVTKFKIDRVEPS---MKSARITDGS 177


>sp|A9IL50|ASSY_BART1 Argininosuccinate synthase OS=Bartonella tribocorum (strain CIP
           105476 / IBS 506) GN=argG PE=3 SV=1
          Length = 411

 Score = 33.1 bits (74), Expect = 1.7,   Method: Compositional matrix adjust.
 Identities = 27/88 (30%), Positives = 40/88 (45%), Gaps = 9/88 (10%)

Query: 137 EDGTTPLPEGVIFVEQLKEEDAADDSGGESEITRAW--GILVQAKGEGCGPACYLLKTSR 194
           E+   P PE  + +  L  EDA D +   + IT  +  G  V   G+   PA  L + +R
Sbjct: 198 ENPALPAPE-YVHIRTLSPEDAPDQA---TRITLGFKKGDAVSINGKNLSPATLLAELNR 253

Query: 195 AGAGSGLG---LCCTHFCLVKVKSFRET 219
            G  +G+G   L    F  +K + F ET
Sbjct: 254 YGRDNGIGRLDLVENRFVGMKSRGFYET 281


>sp|Q9NUX5|POTE1_HUMAN Protection of telomeres protein 1 OS=Homo sapiens GN=POT1 PE=1 SV=1
          Length = 634

 Score = 31.2 bits (69), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 31/78 (39%)

Query: 1   MASLGIHYGGGGGGGAGATFSSNRRGTITKIRYPTASLNVTPAMSENRKCQAMPISISSS 60
           M SL  H  GG   G G          + +++    S N+T     +  CQ+ P     S
Sbjct: 258 MLSLEFHLHGGTSYGRGIRVLPESNSDVDQLKKDLESANLTANQHSDVICQSEPDDSFPS 317

Query: 61  RADIDLVEPKRKQERSVS 78
              + L E +R Q+ S +
Sbjct: 318 SGSVSLYEVERCQQLSAT 335


>sp|Q95K48|POTE1_MACFA Protection of telomeres protein 1 OS=Macaca fascicularis GN=POT1
           PE=2 SV=1
          Length = 634

 Score = 30.8 bits (68), Expect = 8.3,   Method: Compositional matrix adjust.
 Identities = 20/78 (25%), Positives = 31/78 (39%)

Query: 1   MASLGIHYGGGGGGGAGATFSSNRRGTITKIRYPTASLNVTPAMSENRKCQAMPISISSS 60
           M SL  H  GG   G G          + +++    S N+T     +  CQ+ P     S
Sbjct: 258 MLSLEFHLHGGTSYGRGIRVLPETNSDVDQLKKDLESANLTANHHSDVICQSEPDDSFPS 317

Query: 61  RADIDLVEPKRKQERSVS 78
              + L E +R Q+ S +
Sbjct: 318 SGSVSLYEVERCQQLSAT 335


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.314    0.132    0.397 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 90,269,170
Number of Sequences: 539616
Number of extensions: 3923582
Number of successful extensions: 18543
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 22
Number of HSP's that attempted gapping in prelim test: 18482
Number of HSP's gapped (non-prelim): 73
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 59 (27.3 bits)