Query 026890
Match_columns 231
No_of_seqs 19 out of 21
Neff 2.8
Searched_HMMs 46136
Date Fri Mar 29 14:09:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026890.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026890hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF03281 Mab-21: Mab-21 protei 61.7 26 0.00056 30.6 6.1 77 76-152 61-162 (292)
2 PHA03214 nuclear protein UL24; 42.6 34 0.00074 31.8 3.9 13 140-152 61-73 (252)
3 PHA03215 nuclear protein UL24; 41.2 43 0.00092 31.4 4.3 54 140-227 73-128 (262)
4 cd03379 beta_CA_cladeD Carboni 39.2 9.8 0.00021 30.9 -0.0 72 30-106 45-123 (142)
5 PF05813 Orthopox_F7: Orthopox 36.0 9.2 0.0002 29.8 -0.6 15 201-215 5-19 (82)
6 smart00183 NAT_PEP Natriuretic 31.4 23 0.0005 22.8 0.7 20 185-204 6-25 (26)
7 PHA03218 nuclear protein UL24; 30.4 72 0.0016 30.5 4.1 57 140-227 112-170 (306)
8 PF06420 Mgm101p: Mitochondria 26.1 37 0.0008 30.0 1.3 43 142-184 34-91 (171)
9 KOG2825 Putative arsenite-tran 22.3 94 0.002 29.8 3.3 111 4-121 19-159 (323)
10 PF01646 Herpes_UL24: Herpes v 22.1 73 0.0016 27.8 2.4 32 140-197 59-92 (179)
11 PHA02099 hypothetical protein 21.6 55 0.0012 25.8 1.4 15 185-199 64-78 (84)
No 1
>PF03281 Mab-21: Mab-21 protein
Probab=61.73 E-value=26 Score=30.64 Aligned_cols=77 Identities=18% Similarity=0.315 Sum_probs=51.2
Q ss_pred ccchhhHHHHHHHHHHHHHHhcCCCCc--cEEEeecCCCCCCeeeEeecCC-------------CCCChhhHHhhhcCC-
Q 026890 76 SVSTENVIDKWMKDSVVEIVKNLRETP--LLVHVYSDSGSGDSTRLKTEKA-------------VPDDWPLMKSKWEDG- 139 (231)
Q Consensus 76 ~~~~~ek~e~WmreSV~EIVKnl~EAP--fL~~Vfs~~g~g~~~tlk~~~a-------------~pE~Wp~I~e~w~~g- 139 (231)
.-+...||-.|+++-|.+.+++++... .........+.|+..|+.++.. .|..||..+..|-..
T Consensus 61 ~yLs~~kv~~~f~~lv~~ai~~~~~~~~~~~~~~~~~~~~g~a~tl~v~~~~~~i~vdlVPa~~~~~~WP~~a~~~~~~~ 140 (292)
T PF03281_consen 61 GYLSPSKVLSWFRKLVQKAINKCSHSSKRGYVSVISLKPGGPAVTLIVESGGRRISVDLVPAFEFPGGWPRSAQEWLRRF 140 (292)
T ss_pred CeeCHHHHHHHHHHHHHHHHHHhhccccCCccceeeccCCCceEEEEEecCCceEEEEEEEEEEEcCCCCcccccccccc
Confidence 378889999999999999999998655 2222222233455566665533 256888888666543
Q ss_pred ---------CCCCCCeEEEEEe
Q 026890 140 ---------TTPLPEGVIFVEQ 152 (231)
Q Consensus 140 ---------~~~~PdGVILVe~ 152 (231)
.....+|.-||-+
T Consensus 141 ~~Wp~~~~~~~~~~~~~~lvpk 162 (292)
T PF03281_consen 141 NGWPSPKLIQEIKSFGFHLVPK 162 (292)
T ss_pred cCCCchhhhhhcccCceEEeee
Confidence 2334567888887
No 2
>PHA03214 nuclear protein UL24; Provisional
Probab=42.56 E-value=34 Score=31.78 Aligned_cols=13 Identities=8% Similarity=0.529 Sum_probs=10.9
Q ss_pred CCCCCCeEEEEEe
Q 026890 140 TTPLPEGVIFVEQ 152 (231)
Q Consensus 140 ~~~~PdGVILVe~ 152 (231)
+.+.||-||+++.
T Consensus 61 G~RiPDCI~v~~~ 73 (252)
T PHA03214 61 GPRIPDCIVLLKS 73 (252)
T ss_pred CCCCCCEEEEEec
Confidence 4699999999973
No 3
>PHA03215 nuclear protein UL24; Provisional
Probab=41.23 E-value=43 Score=31.38 Aligned_cols=54 Identities=20% Similarity=0.305 Sum_probs=32.1
Q ss_pred CCCCCCeEEEEEecCcccccCCCCCcccceeEEEEEEecccCCCCCceEE--eeecccCCCCCCCceeeeeeeeeecccc
Q 026890 140 TTPLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACYL--LKTSRAGAGSGLGLCCTHFCLVKVKSFR 217 (231)
Q Consensus 140 ~~~~PdGVILVe~l~~~~ea~~~~~~~~~t~~WGvVVQgrg~~ca~~CYl--LKTtRv~S~~glG~~CTHFCL~kVk~Fg 217 (231)
+.+.||-||+++--++. ...-.||+ ||||+-.+... . ..| +.|+
T Consensus 73 GrRrPDCI~vf~~~~~~-------------------------~~~~vCyIIELKTC~~~s~~~--T------~sK-~~Qr 118 (262)
T PHA03215 73 GARRPDCLCVFEFANDK-------------------------TLGGVCVIIELKTCKFISSGD--T------ASK-REQR 118 (262)
T ss_pred CCCCCCEEEEEeecCCC-------------------------CcCcEEEEEEeeeccccccCc--c------hHH-HHHH
Confidence 46999999998732110 01125999 79999865321 1 123 3456
Q ss_pred hhHHHHHHhh
Q 026890 218 ETAEAQFKNC 227 (231)
Q Consensus 218 et~~sQl~n~ 227 (231)
-+=..||+.|
T Consensus 119 ~qGLrQLrDS 128 (262)
T PHA03215 119 ATGLSQLRDS 128 (262)
T ss_pred HHHHHHHHHH
Confidence 5666677654
No 4
>cd03379 beta_CA_cladeD Carbonic anhydrases (CA) are zinc-containing enzymes that catalyze the reversible hydration of carbon dioxide in a two-step mechanism in which the nucleophilic attack of a zinc-bound hydroxide ion on carbon dioxide is followed by the regeneration of an active site by ionization of the zinc-bound water molecule and removal of a proton from the active site. CAs are ubiquitous enzymes involved in fundamental processes like photosynthesis, respiration, pH homeostasis and ion transport. There are three evolutionarily distinct families of CAs (the alpha-, beta-, and gamma-CAs) which show no significant sequence identity or structural similarity. Within the beta-CA family there are four evolutionarily distinct clades (A through D). The beta-CAs are multimeric enzymes (forming dimers,tetramers,hexamers and octamers) which are present in higher plants, algae, fungi, archaea and prokaryotes.
Probab=39.21 E-value=9.8 Score=30.86 Aligned_cols=72 Identities=17% Similarity=0.271 Sum_probs=41.4
Q ss_pred ccccCCcccccccc-ccccccCCCceeeeeeccceecccccccccccccchhhHHHHH------HHHHHHHHHhcCCCCc
Q 026890 30 KIRYPTASLNVTPA-MSENRKCQAMPISISSSRADIDLVEPKRKQERSVSTENVIDKW------MKDSVVEIVKNLRETP 102 (231)
Q Consensus 30 ~~~~~~~~~~~r~~-~~~~~~s~~~~~s~s~s~~~~d~~~~~~~~~~~~~~~ek~e~W------mreSV~EIVKnl~EAP 102 (231)
.|-|......+.=- +-+|+||++.+.+.+....++ .. .+... .......+.| .++.|.+=|++|+++|
T Consensus 45 sl~~av~~l~~~~IiV~gHt~Cg~~~a~~~~~~~~~--~~--~~~~~-~~~~~~~~~~~~~~~~~~~nV~~~v~~L~~~p 119 (142)
T cd03379 45 SLVVSVYLLGTREIIVIHHTDCGMLTFTDEELKEKM--KE--RGIAE-AYGGIDKEFWFLGFDDLEESVREDVERIRNHP 119 (142)
T ss_pred HHHHHHHHhCCCEEEEEeecCCcceEecHHHHHHHH--HH--hcCcc-hhcccCcchhhcccccHHHHHHHHHHHHHhCc
Confidence 34455555555555 778999999888755322222 11 00000 0001112223 4889999999999999
Q ss_pred cEEE
Q 026890 103 LLVH 106 (231)
Q Consensus 103 fL~~ 106 (231)
|+..
T Consensus 120 ~i~~ 123 (142)
T cd03379 120 LIPD 123 (142)
T ss_pred CccC
Confidence 9865
No 5
>PF05813 Orthopox_F7: Orthopoxvirus F7 protein; InterPro: IPR008725 The function of the orthopoxvirus F7L proteins are unknown.
Probab=36.01 E-value=9.2 Score=29.80 Aligned_cols=15 Identities=47% Similarity=1.099 Sum_probs=12.7
Q ss_pred CCceeeeeeeeeecc
Q 026890 201 LGLCCTHFCLVKVKS 215 (231)
Q Consensus 201 lG~~CTHFCL~kVk~ 215 (231)
||.||-.||.+|-|.
T Consensus 5 mgsccgrfcdaknkn 19 (82)
T PF05813_consen 5 MGSCCGRFCDAKNKN 19 (82)
T ss_pred ehhhhhhhhcccccc
Confidence 577999999999873
No 6
>smart00183 NAT_PEP Natriuretic peptide. Atrial natriuretic peptides are vertebrate hormones important in the overall control of cardiovascular homeostasis and sodium and water balance in general.
Probab=31.41 E-value=23 Score=22.82 Aligned_cols=20 Identities=45% Similarity=0.755 Sum_probs=17.6
Q ss_pred CceEEeeecccCCCCCCCce
Q 026890 185 PACYLLKTSRAGAGSGLGLC 204 (231)
Q Consensus 185 ~~CYlLKTtRv~S~~glG~~ 204 (231)
++|+=+|-=|..|-+||||.
T Consensus 6 ~gCFG~~~DRIgs~SglGC~ 25 (26)
T smart00183 6 SGCFGLKLDRIGSMSGLGCX 25 (26)
T ss_pred CCcccccccccccccccCcC
Confidence 57999999999998999873
No 7
>PHA03218 nuclear protein UL24; Provisional
Probab=30.41 E-value=72 Score=30.49 Aligned_cols=57 Identities=25% Similarity=0.314 Sum_probs=32.3
Q ss_pred CCCCCCeEEEEEecCcccccCCCCCcccceeEEEEEEecccCCCCCceEE--eeecccCCCCCCCceeeeeeeeeecccc
Q 026890 140 TTPLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACYL--LKTSRAGAGSGLGLCCTHFCLVKVKSFR 217 (231)
Q Consensus 140 ~~~~PdGVILVe~l~~~~ea~~~~~~~~~t~~WGvVVQgrg~~ca~~CYl--LKTtRv~S~~glG~~CTHFCL~kVk~Fg 217 (231)
+.+.||-||+++. +.+.. ...+.-.||| ||||+..+ ++. + .+| +.|+
T Consensus 112 GrRrPDCI~v~~~-~~~~~---------------------~~~~~~vCyIIELKTC~fs~--n~~-T-----~sK-~~Qr 160 (306)
T PHA03218 112 GRRRPDCICMFTL-PRGLW---------------------EEGCDGVCVIIELKTCRFSR--NLK-T-----ASK-NEQR 160 (306)
T ss_pred CCCCCCEEEEEec-ccccc---------------------ccCCCcEEEEEEeecccccC--CCC-c-----HHH-HHHH
Confidence 4599999999952 11111 0122357999 79999864 221 1 222 3455
Q ss_pred hhHHHHHHhh
Q 026890 218 ETAEAQFKNC 227 (231)
Q Consensus 218 et~~sQl~n~ 227 (231)
-.=..||+.|
T Consensus 161 ~qGLrQLrDS 170 (306)
T PHA03218 161 LTGTKQLLDS 170 (306)
T ss_pred HHHHHHHHHH
Confidence 5555666543
No 8
>PF06420 Mgm101p: Mitochondrial genome maintenance MGM101; InterPro: IPR009446 The mgm101 gene was identified as essential for maintenance of the mitochondrial genome in Saccharomyces cerevisiae []. Based on its DNA-binding activity, and experimental work with a temperature-sensitive mgm101 mutant, it has been proposed that the mgm101 gene product performs an essential function in the repair of oxidatively damaged mitochondrial DNA [].; GO: 0000002 mitochondrial genome maintenance, 0000262 mitochondrial chromosome
Probab=26.10 E-value=37 Score=30.04 Aligned_cols=43 Identities=14% Similarity=0.305 Sum_probs=28.9
Q ss_pred CCCCeEEEEEecCc--------ccc-------cCCCCCcccceeEEEEEEecccCCCC
Q 026890 142 PLPEGVIFVEQLKE--------EDA-------ADDSGGESEITRAWGILVQAKGEGCG 184 (231)
Q Consensus 142 ~~PdGVILVe~l~~--------~~e-------a~~~~~~~~~t~~WGvVVQgrg~~ca 184 (231)
..|||+|.+-++.= |.. .+...+..-.++=|+++++||.++++
T Consensus 34 IKPDGliYLPEikYRRiLN~AFGpGgWgL~Prg~~~v~~k~v~ReyaLic~Gr~Vs~a 91 (171)
T PF06420_consen 34 IKPDGLIYLPEIKYRRILNKAFGPGGWGLVPRGETIVTGKIVTREYALICHGRLVSQA 91 (171)
T ss_pred ECCCceEEchHHHHHHHHHHhcCCCceeeeecCCceecCceEEEEEEEEEcCEEEEEe
Confidence 58999999876532 110 11112234588999999999999876
No 9
>KOG2825 consensus Putative arsenite-translocating ATPase [Inorganic ion transport and metabolism]
Probab=22.28 E-value=94 Score=29.84 Aligned_cols=111 Identities=18% Similarity=0.228 Sum_probs=61.7
Q ss_pred cceeeeCCCCCCCCcccccccceeecccccCCcccccccc--ccccccCCCceeeeeeccceeccccccccccc-ccchh
Q 026890 4 LGIHYGGGGGGGAGATFSSNRRGTITKIRYPTASLNVTPA--MSENRKCQAMPISISSSRADIDLVEPKRKQER-SVSTE 80 (231)
Q Consensus 4 lg~~~~g~~~~~~~~~~~~n~r~~~~~~~~~~~~~~~r~~--~~~~~~s~~~~~s~s~s~~~~d~~~~~~~~~~-~~~~~ 80 (231)
|---|+||-|+-.-.+-|.---..++|.|-++.--+--|| ||-+-+-.- + ..-.-+.+.+.+-.+|+ |.+..
T Consensus 19 lKwifVGGKGGVGKTTcs~sLAvqla~~r~~vLiISTDPAHNlSDAF~qkf---t--k~pt~V~Gf~nLfAMEIDp~~e~ 93 (323)
T KOG2825|consen 19 LKWIFVGGKGGVGKTTCSCSLAVQLAKVRESVLIISTDPAHNLSDAFSQKF---T--KTPTKVEGFENLFAMEIDPNVEM 93 (323)
T ss_pred eeEEEEcCcCCcCccchhhHHHHHHhccCCceEEeecCcccchHHHHHHHh---c--CCCccccChhhheeeecCCchhh
Confidence 4455788776655444444333555555555555556666 554433221 1 22233344444444554 32222
Q ss_pred hHHHHH---------------HHH------------HHHHHHhcCCCCccEEEeecCCCCCCeeeEee
Q 026890 81 NVIDKW---------------MKD------------SVVEIVKNLRETPLLVHVYSDSGSGDSTRLKT 121 (231)
Q Consensus 81 ek~e~W---------------mre------------SV~EIVKnl~EAPfL~~Vfs~~g~g~~~tlk~ 121 (231)
..|.+= |.| |.+|+.|+|++--|=+-||+-. ++.+||+.
T Consensus 94 ~~~~~m~~~~~~n~~~~g~g~l~e~~~~~Pgideamsfae~~klvk~~~F~~vVFDTA--PTGHTLRl 159 (323)
T KOG2825|consen 94 GDMPEMFGNAANNEGSDGKGMLQELANAFPGIDEAMSFAEVMKLVKGMNFDVVVFDTA--PTGHTLRL 159 (323)
T ss_pred hhhHHHhhcccccccccchhHHHHHHhcCCChhHHHhHHHHHHHhhccccceEEeccC--CCcceehh
Confidence 222221 111 6799999999999999999988 55566664
No 10
>PF01646 Herpes_UL24: Herpes virus protein UL24; InterPro: IPR002580 This entry consists of the human herpes virus protein UL24 and its orthologues, which are universally present in avian, mammalian and reptilian herpes viruses. Though the functions of these proteins are not known, computational analysis suggests that they may belong to the restriction endonuclease-like fold superfamily, which contains a variety of endonucleases, DNA repair enzymes and exonucleases []. Proteins in this entry contain an absolutely conserved PD-(D/E)XK motif thought to be critical for nucleotide-cleaving activity.
Probab=22.08 E-value=73 Score=27.85 Aligned_cols=32 Identities=25% Similarity=0.373 Sum_probs=24.1
Q ss_pred CCCCCCeEEEEEecCcccccCCCCCcccceeEEEEEEecccCCCCCceEE--eeecccCC
Q 026890 140 TTPLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGEGCGPACYL--LKTSRAGA 197 (231)
Q Consensus 140 ~~~~PdGVILVe~l~~~~ea~~~~~~~~~t~~WGvVVQgrg~~ca~~CYl--LKTtRv~S 197 (231)
+.+.||-||+++.-+++ +...||+ ||||+..+
T Consensus 59 G~R~PDCI~v~~~~~~~--------------------------~~~vCyiiElKTc~~~~ 92 (179)
T PF01646_consen 59 GRRRPDCICVFSSESSG--------------------------GKGVCYIIELKTCRFSA 92 (179)
T ss_pred CCCCCCEEEEEecCCCC--------------------------cceEEEEEEeehhcccc
Confidence 46999999999754221 2358999 69999987
No 11
>PHA02099 hypothetical protein
Probab=21.63 E-value=55 Score=25.79 Aligned_cols=15 Identities=27% Similarity=0.782 Sum_probs=12.8
Q ss_pred CceEEeeecccCCCC
Q 026890 185 PACYLLKTSRAGAGS 199 (231)
Q Consensus 185 ~~CYlLKTtRv~S~~ 199 (231)
-+||+|.|.+++.++
T Consensus 64 ~~~yi~ntvk~p~ga 78 (84)
T PHA02099 64 HVCYIVNTVKTPTGA 78 (84)
T ss_pred hheeeeeeeecCCCc
Confidence 379999999999854
Done!