Query 026890
Match_columns 231
No_of_seqs 19 out of 21
Neff 2.8
Searched_HMMs 13730
Date Tue Mar 26 00:45:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026890.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026890hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1g5ca_ c.53.2.1 (A:) beta-car 32.9 3.1 0.00023 31.2 -0.8 71 30-105 68-145 (169)
2 d2fg9a1 b.45.1.1 (A:1-157) 5-n 24.1 60 0.0044 22.5 5.1 40 142-181 63-102 (157)
3 d1a6qa1 a.159.1.1 (A:297-368) 21.7 7 0.00051 27.1 -0.6 31 79-109 8-39 (72)
4 d1qq5a_ c.108.1.1 (A:) L-2-Hal 19.6 17 0.0012 25.8 1.2 55 89-153 119-173 (245)
5 d2fhqa1 b.45.1.1 (A:3-137) Put 19.0 12 0.00084 26.2 0.1 55 94-148 55-114 (135)
6 d1ok7a1 d.131.1.1 (A:1-122) DN 17.5 20 0.0014 25.0 1.1 45 90-134 74-121 (122)
7 d1z1za1 d.323.1.1 (A:2-130) Mi 17.4 41 0.003 25.4 2.9 23 77-99 70-92 (129)
8 d1a9xa6 d.142.1.2 (A:677-935) 17.2 42 0.003 26.6 3.1 58 91-157 25-83 (259)
9 d1ddza1 c.53.2.1 (A:84-325) be 13.8 85 0.0062 24.4 4.2 106 28-134 102-231 (242)
10 d2adza1 b.55.1.1 (A:1-43,A:117 12.4 51 0.0037 24.2 2.2 33 186-229 54-96 (105)
No 1
>d1g5ca_ c.53.2.1 (A:) beta-carbonic anhydrase {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=32.94 E-value=3.1 Score=31.24 Aligned_cols=71 Identities=18% Similarity=0.216 Sum_probs=40.0
Q ss_pred ccccCCcccccccc-ccccccCCCceeeeeeccceecccccccccccccchhhHHHHHH------HHHHHHHHhcCCCCc
Q 026890 30 KIRYPTASLNVTPA-MSENRKCQAMPISISSSRADIDLVEPKRKQERSVSTENVIDKWM------KDSVVEIVKNLRETP 102 (231)
Q Consensus 30 ~~~~~~~~~~~r~~-~~~~~~s~~~~~s~s~s~~~~d~~~~~~~~~~~~~~~ek~e~Wm------reSV~EIVKnl~EAP 102 (231)
.+-|-.....++-- +=+|++||+++.+......++. . .+... ...++....|+ +++|.+=|++|+..|
T Consensus 68 sl~~av~~Lgv~~IvV~GHt~CG~v~~~~~~~~~~~~--~--~~~~~-~~~~~~~~~~~~~~~~~e~nV~~~v~~L~~~p 142 (169)
T d1g5ca_ 68 SAAVAIYALGDNEIIIVGHTDCGMARLDEDLIVSRMR--E--LGVEE-EVIENFSIDVLNPVGDEEENVIEGVKRLKSSP 142 (169)
T ss_dssp HHHHHHHHHCCCEEEEEEESSCCTTSCCHHHHHHHHH--H--TTCCH-HHHHHHHHHHTSSCCCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHhcCCcEEEEeccCCCCceeecHHHHhhHHH--h--hhhhH-HHHHhhchhhccccccHHHHHHHHHHHHHhCc
Confidence 35555555666555 6789999997765432222210 0 01111 11122222343 679999999999999
Q ss_pred cEE
Q 026890 103 LLV 105 (231)
Q Consensus 103 fL~ 105 (231)
++.
T Consensus 143 ~i~ 145 (169)
T d1g5ca_ 143 LIP 145 (169)
T ss_dssp TSC
T ss_pred ccc
Confidence 874
No 2
>d2fg9a1 b.45.1.1 (A:1-157) 5-nitroimidazole resistance protein BT3078 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=24.08 E-value=60 Score=22.52 Aligned_cols=40 Identities=13% Similarity=-0.127 Sum_probs=24.8
Q ss_pred CCCCeEEEEEecCcccccCCCCCcccceeEEEEEEecccC
Q 026890 142 PLPEGVIFVEQLKEEDAADDSGGESEITRAWGILVQAKGE 181 (231)
Q Consensus 142 ~~PdGVILVe~l~~~~ea~~~~~~~~~t~~WGvVVQgrg~ 181 (231)
+.|..-+.|.....-..+.....+...++||-|+|+|+-.
T Consensus 63 ~np~V~~~v~~~~~~~~~~~~~~~~~~~~y~sV~v~G~a~ 102 (157)
T d2fg9a1 63 RNNNVCITFSLGHKLVYQHKQVACSYSMRSESAMCRGKVE 102 (157)
T ss_dssp HCCEEEEEEECCCEEEEEC----CEEEEEEEEEEEEEECE
T ss_pred cCCeEEEEEEcCCccccccccccccccccEEEEEEEEEEE
Confidence 5788777776654433322222344678999999999763
No 3
>d1a6qa1 a.159.1.1 (A:297-368) Protein serine/threonine phosphatase 2C, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.71 E-value=7 Score=27.08 Aligned_cols=31 Identities=42% Similarity=0.582 Sum_probs=22.5
Q ss_pred hhhHHHHHHHHHHHHHHhcCCC-CccEEEeec
Q 026890 79 TENVIDKWMKDSVVEIVKNLRE-TPLLVHVYS 109 (231)
Q Consensus 79 ~~ek~e~WmreSV~EIVKnl~E-APfL~~Vfs 109 (231)
.+..+|.-++.-|.||++.-++ .|.|.|||.
T Consensus 8 kE~eLd~~Le~~v~eii~~~~~~~~dl~~Vm~ 39 (72)
T d1a6qa1 8 KEAELDKYLECRVEEIIKKQGEGVPDLVHVMR 39 (72)
T ss_dssp HHHHHHHHHHHHHHHHCC----CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcccCCchHHHHHH
Confidence 3578999999999999998775 488888774
No 4
>d1qq5a_ c.108.1.1 (A:) L-2-Haloacid dehalogenase, HAD {Xanthobacter autotrophicus [TaxId: 280]}
Probab=19.62 E-value=17 Score=25.79 Aligned_cols=55 Identities=25% Similarity=0.285 Sum_probs=39.3
Q ss_pred HHHHHHHhcCCCCccEEEeecCCCCCCeeeEeecCCCCCChhhHHhhhcCCCCCCCCeEEEEEec
Q 026890 89 DSVVEIVKNLRETPLLVHVYSDSGSGDSTRLKTEKAVPDDWPLMKSKWEDGTTPLPEGVIFVEQL 153 (231)
Q Consensus 89 eSV~EIVKnl~EAPfL~~Vfs~~g~g~~~tlk~~~a~pE~Wp~I~e~w~~g~~~~PdGVILVe~l 153 (231)
+.+..+++++.-..+...+|+++ . +...|+.|+-+..+.++++ -.|+-+|+|.--
T Consensus 119 ~~~~~~~~~~~~~~~fd~v~~s~-~-----~~~~KP~p~~f~~a~~~lg----~~p~e~l~VgD~ 173 (245)
T d1qq5a_ 119 DMLQALVANAGLTDSFDAVISVD-A-----KRVFKPHPDSYALVEEVLG----VTPAEVLFVSSN 173 (245)
T ss_dssp HHHHHHHHHTTCGGGCSEEEEGG-G-----GTCCTTSHHHHHHHHHHHC----CCGGGEEEEESC
T ss_pred HHHHHHHhhcccccccccccccc-c-----ccccCccHHHHHHHHHHhC----CChhhEEEEeCC
Confidence 34566777777667777777665 1 1234677888999999996 679999999743
No 5
>d2fhqa1 b.45.1.1 (A:3-137) Putative general stress protein BT1439 {Bacteroides thetaiotaomicron [TaxId: 818]}
Probab=18.98 E-value=12 Score=26.22 Aligned_cols=55 Identities=13% Similarity=0.167 Sum_probs=33.5
Q ss_pred HHhcCCCCccEEEeecCCCCC----CeeeEeecCC-CCCChhhHHhhhcCCCCCCCCeEE
Q 026890 94 IVKNLRETPLLVHVYSDSGSG----DSTRLKTEKA-VPDDWPLMKSKWEDGTTPLPEGVI 148 (231)
Q Consensus 94 IVKnl~EAPfL~~Vfs~~g~g----~~~tlk~~~a-~pE~Wp~I~e~w~~g~~~~PdGVI 148 (231)
-++||+.-|=....|.+.++. |..++-...+ ..+.|.+..+.|-.++...|+-+|
T Consensus 55 k~~~i~~np~vsl~~~~~~~~v~i~G~a~i~~d~~~~~~~w~~~~~~~~~~g~~dp~~~v 114 (135)
T d2fhqa1 55 KTIDFLSNPKAGLCFQEKGDSVALMGEVEVVTDEKLKQELWQDWFIEHFPGGPTDPGYVL 114 (135)
T ss_dssp HHHHHHHCCEEEEEEEETTEEEEEEEEEEEECCHHHHHHSCCGGGGGTCTTCTTCTTEEE
T ss_pred HHHHHhcCCeEEEEEEeCCCEEEEEEEEEEEeCHHHHHHHHHHHHHHhcCCCCCCCCEEE
Confidence 357777778777778776422 1222211111 245898888888777777787543
No 6
>d1ok7a1 d.131.1.1 (A:1-122) DNA polymerase III, beta subunit {Escherichia coli [TaxId: 562]}
Probab=17.48 E-value=20 Score=25.00 Aligned_cols=45 Identities=13% Similarity=0.248 Sum_probs=26.4
Q ss_pred HHHHHHhcCCCCccEEEeecCCC---CCCeeeEeecCCCCCChhhHHh
Q 026890 90 SVVEIVKNLRETPLLVHVYSDSG---SGDSTRLKTEKAVPDDWPLMKS 134 (231)
Q Consensus 90 SV~EIVKnl~EAPfL~~Vfs~~g---~g~~~tlk~~~a~pE~Wp~I~e 134 (231)
-+.||||.|.+.+.+..-.++.. ..+...+++..-.+++||.|-|
T Consensus 74 ~l~divr~lp~~~~i~~~~~~~~l~i~~~~~~f~l~~~~~~~fP~ipe 121 (122)
T d1ok7a1 74 KFFDICRGLPEGAEIAVQLEGERMLVRSGRSRFSLSTLPAADFPNLDD 121 (122)
T ss_dssp HHHHHHHHSCTTCEEEEEEETTEEEEEETTEEEEEECBCGGGSCCCCC
T ss_pred HHHHHHHhCCCCCcEEEEecCCEEEEEECceEEEEccCCHHHCCCCCC
Confidence 47899999987765444333330 1122334444456888888754
No 7
>d1z1za1 d.323.1.1 (A:2-130) Minor tail protein gpU {Bacteriophage lambda [TaxId: 10710]}
Probab=17.40 E-value=41 Score=25.38 Aligned_cols=23 Identities=13% Similarity=0.534 Sum_probs=19.6
Q ss_pred cchhhHHHHHHHHHHHHHHhcCC
Q 026890 77 VSTENVIDKWMKDSVVEIVKNLR 99 (231)
Q Consensus 77 ~~~~ek~e~WmreSV~EIVKnl~ 99 (231)
...+..||.||++-|.++++.+.
T Consensus 70 ~~~dseLD~~~E~kI~~~~~~~~ 92 (129)
T d1z1za1 70 QVPDSELDAWMESRIYPVMSDIP 92 (129)
T ss_dssp TSCHHHHHHHHHHHHHHHHHHCH
T ss_pred CCChHHHHHHHHHHHHHHHHhch
Confidence 66799999999999999987643
No 8
>d1a9xa6 d.142.1.2 (A:677-935) Carbamoyl phosphate synthetase (CPS), large subunit ATP-binding domains {Escherichia coli [TaxId: 562]}
Probab=17.16 E-value=42 Score=26.56 Aligned_cols=58 Identities=16% Similarity=0.273 Sum_probs=30.1
Q ss_pred HHHHHhcCCCCccEEE-eecCCCCCCeeeEeecCCCCCChhhHHhhhcCCCCCCCCeEEEEEecCccc
Q 026890 91 VVEIVKNLRETPLLVH-VYSDSGSGDSTRLKTEKAVPDDWPLMKSKWEDGTTPLPEGVIFVEQLKEED 157 (231)
Q Consensus 91 V~EIVKnl~EAPfL~~-Vfs~~g~g~~~tlk~~~a~pE~Wp~I~e~w~~g~~~~PdGVILVe~l~~~~ 157 (231)
..+++++|. .|+++- .|...|+|-.. ..+..++++.|......+||+-+|||+.=.+.
T Consensus 25 a~~~a~~iG-fPvivKps~~~gG~G~~i--------v~~~~el~~~~~~a~~~~~~~~vlie~~i~~~ 83 (259)
T d1a9xa6 25 AVEKAKEIG-YPLVVRASYVLGGRAMEI--------VYDEADLRRYFQTAVSVSNDAPVLLDHFLDDA 83 (259)
T ss_dssp HHHHHHHHC-SSEEEEC-------CEEE--------ECSHHHHHHHHHHCC--------EEEBCCTTC
T ss_pred HHHHHHHhC-CCEEEEECCCCCCCccEe--------ecCHHHHHHHhhhhhcccccchhhhhhhcCCC
Confidence 455667764 898887 56555444433 35677888888877788999989999876654
No 9
>d1ddza1 c.53.2.1 (A:84-325) beta-carbonic anhydrase {Red alga (Porphyridium purpureum) [TaxId: 35688]}
Probab=13.81 E-value=85 Score=24.44 Aligned_cols=106 Identities=17% Similarity=0.282 Sum_probs=64.6
Q ss_pred ecccccCCcccccccc-ccccccCCCceeeeeeccc-----eeccccccccc-----ccccchhhHHHHHHHHHHHHHHh
Q 026890 28 ITKIRYPTASLNVTPA-MSENRKCQAMPISISSSRA-----DIDLVEPKRKQ-----ERSVSTENVIDKWMKDSVVEIVK 96 (231)
Q Consensus 28 ~~~~~~~~~~~~~r~~-~~~~~~s~~~~~s~s~s~~-----~~d~~~~~~~~-----~~~~~~~ek~e~WmreSV~EIVK 96 (231)
+..|.|-.....++=. +=+|++|++++-.+...+. ++......... .......+.++.-.+.+|.+-|+
T Consensus 102 ~asleyAv~~L~v~~IvV~GHt~CGav~aa~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~NV~~qv~ 181 (242)
T d1ddza1 102 LSVLQYAVQYLKVKHILVCGHYGCGGAKAALGDSRLGLIDNWLRHIRDVRRMNAKYLDKCKDGDEELNRLIELNVLEQVH 181 (242)
T ss_dssp HHHHHHHHHTSCCSEEEEEEETTCHHHHHHHHCCCCTHHHHHHHHHHHHHHHTHHHHTTCSSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcccCCcEEEEEeccCcchhhhhhhhcccccchhHHHHHHHHHHHhhhhhhccCcHHHHHHHHHHHHHHHHHH
Confidence 4456676666676666 7789999986554332111 00000000000 01123456778888999999999
Q ss_pred cCCCCccEE-------------EeecCCCCCCeeeEeecCCCCCChhhHHh
Q 026890 97 NLRETPLLV-------------HVYSDSGSGDSTRLKTEKAVPDDWPLMKS 134 (231)
Q Consensus 97 nl~EAPfL~-------------~Vfs~~g~g~~~tlk~~~a~pE~Wp~I~e 134 (231)
||++.|++. .+|+-+ .|.-.-|-+....+|+..++-.
T Consensus 182 ~L~~~p~I~~~~~~~~~l~IhG~vYDi~-TG~V~~L~~~~~~~e~i~~~~~ 231 (242)
T d1ddza1 182 NVCATSIVQDAWDAGQELTVQGVVYGVG-DGKLRDLGVVVNSSDDISKFYR 231 (242)
T ss_dssp HHHHSHHHHHHHHTTCCCEEEEEEECTT-TTCCEEEEEESCCCCCCGGGTC
T ss_pred HHhcCHHHHHHHHcCCccEEEEEEEECC-CcEEEEeCCCCCchhhHHHHHh
Confidence 999998872 477777 6665666666666777776653
No 10
>d2adza1 b.55.1.1 (A:1-43,A:117-178) Alpha-1-syntrophin {Mouse (Mus musculus) [TaxId: 10090]}
Probab=12.36 E-value=51 Score=24.17 Aligned_cols=33 Identities=18% Similarity=0.456 Sum_probs=22.8
Q ss_pred ceEEeeecccC----------CCCCCCceeeeeeeeeecccchhHHHHHHhhhc
Q 026890 186 ACYLLKTSRAG----------AGSGLGLCCTHFCLVKVKSFRETAEAQFKNCWL 229 (231)
Q Consensus 186 ~CYlLKTtRv~----------S~~glG~~CTHFCL~kVk~Fget~~sQl~n~WL 229 (231)
-|||-+.++.. |++| .|.|..|.| +.++ .++|+
T Consensus 54 mcyvtR~~~~~D~EnR~lElhSpDG-----~~t~iLR~k---D~a~---A~~WF 96 (105)
T d2adza1 54 MAYVSRRCTPTDPEPRYLEICAADG-----QDAVFLRAK---DEAS---ARSWA 96 (105)
T ss_dssp TCEEEEECCSSCCSSCEEEEEETTT-----TEEEEECCS---SHHH---HHHHH
T ss_pred eEEeeecccCCCCcccEEEEECCCC-----CceEEEEcC---CHHH---HHHHH
Confidence 59998888876 4444 499999998 3333 44665
Done!