BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026891
(231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5RBU2|RM46_PONAB 39S ribosomal protein L46, mitochondrial OS=Pongo abelii GN=MRPL46
PE=2 SV=1
Length = 279
Score = 84.3 bits (207), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 6/140 (4%)
Query: 81 MEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESEESL 140
+++ RITE D+ NDR SL R LDR L L++ E FG + +W P+ ++ E+L
Sbjct: 129 LQFKLGARITEADEKNDRTSLNRKLDRNLVLLVR-EKFG---DQDVWILPQTEWQPGETL 184
Query: 141 RKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSY--KQFFFKSQVIASNKF 198
R AE L ++ + F+GNAP GH + + M + K FFFK+ ++ +
Sbjct: 185 RGTAERTLATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFS 244
Query: 199 TIGKCEDFVWVTKDELMEYF 218
G VWVTKDEL +Y
Sbjct: 245 QAGNKGHHVWVTKDELGDYL 264
>sp|Q9H2W6|RM46_HUMAN 39S ribosomal protein L46, mitochondrial OS=Homo sapiens GN=MRPL46
PE=1 SV=1
Length = 279
Score = 84.0 bits (206), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 50/140 (35%), Positives = 74/140 (52%), Gaps = 6/140 (4%)
Query: 81 MEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESEESL 140
+++ RITE D+ NDR SL R LDR L L++ E FG + +W P+ ++ E+L
Sbjct: 129 LQFKLGARITEADEKNDRTSLNRKLDRNLVLLVR-EKFG---DQDVWILPQAEWQPGETL 184
Query: 141 RKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSY--KQFFFKSQVIASNKF 198
R AE L ++ + F+GNAP GH + + M + K FFFK+ ++ +
Sbjct: 185 RGTAERTLATLSENNMEAKFLGNAPCGHYTFKFPQAMRTESNLGAKVFFFKALLLTGDFS 244
Query: 199 TIGKCEDFVWVTKDELMEYF 218
G VWVTKDEL +Y
Sbjct: 245 QAGNKGHHVWVTKDELGDYL 264
>sp|Q9EQI8|RM46_MOUSE 39S ribosomal protein L46, mitochondrial OS=Mus musculus GN=Mrpl46
PE=2 SV=1
Length = 283
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 81 MEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESEESL 140
+++ P R TE DK NDR SL R LDR L L++ + G + +W P+ ++ E+L
Sbjct: 127 LQFRPGARETEADKKNDRTSLHRKLDRNLVLLVREKL----GDQDVWMLPQVEWQPGETL 182
Query: 141 RKCAECALQSVLGDLSHTYFVGNAPMGHMVMQ--PAEKMPDVPSYKQFFFKSQVIASNKF 198
R AE L ++ + F+GNAP GH + A + K FFFK+ ++ +
Sbjct: 183 RGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIQTESDLGVKVFFFKALLLTGDFV 242
Query: 199 TIGKCEDFVWVTKDELMEYF 218
GK VW +K+EL +Y
Sbjct: 243 QAGKKSRHVWASKEELGDYL 262
>sp|Q5RK00|RM46_RAT 39S ribosomal protein L46, mitochondrial OS=Rattus norvegicus
GN=Mrpl46 PE=2 SV=1
Length = 277
Score = 80.1 bits (196), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 47/140 (33%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 81 MEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESEESL 140
+++ P R TE DK NDR SL R LDR L L++ + G + +W P+ ++ E+L
Sbjct: 127 LQFRPGARETEADKKNDRTSLHRKLDRNLILLVREKL----GDQDLWMLPQVEWQPGETL 182
Query: 141 RKCAECALQSVLGDLSHTYFVGNAPMGHMVMQ--PAEKMPDVPSYKQFFFKSQVIASNKF 198
R AE L ++ + F+GNAP GH + A + K FFFK+ ++ +
Sbjct: 183 RGTAERILATLSENNMEAKFLGNAPCGHYKFKFPKAIRTESDLGVKVFFFKALLLTGDFV 242
Query: 199 TIGKCEDFVWVTKDELMEYF 218
GK VW +K+EL +Y
Sbjct: 243 QTGKKGRHVWASKEELGDYL 262
>sp|Q3SZ22|RM46_BOVIN 39S ribosomal protein L46, mitochondrial OS=Bos taurus GN=MRPL46
PE=2 SV=1
Length = 277
Score = 75.1 bits (183), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 44/140 (31%), Positives = 72/140 (51%), Gaps = 6/140 (4%)
Query: 81 MEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESEESL 140
+++ P RIT+ D NDR SL R LDR L L++ + G + +W P+ ++ E+L
Sbjct: 127 LQFKPGARITDADVKNDRSSLHRKLDRNLILLVKDKL----GDQDVWMLPQAEWQPGETL 182
Query: 141 RKCAECALQSVLGDLSHTYFVGNAPMGHMVMQ--PAEKMPDVPSYKQFFFKSQVIASNKF 198
R+ AE L ++ + F+GNAP GH + A + K FFFK+ ++ +
Sbjct: 183 RQTAERTLATLSENNLEAKFLGNAPCGHYKFKFPQAVRAEGSLGAKIFFFKALLLTGDFS 242
Query: 199 TIGKCEDFVWVTKDELMEYF 218
+ VW +K+EL +Y
Sbjct: 243 PAVEKGRHVWASKEELGDYL 262
>sp|P36528|RM17_YEAST 54S ribosomal protein L17, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=MRPL17 PE=1
SV=2
Length = 281
Score = 72.4 bits (176), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 53/167 (31%), Positives = 81/167 (48%), Gaps = 23/167 (13%)
Query: 67 FLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPI 126
F + + K D +P RITE D++ND KSL+R L R LYL++ ++
Sbjct: 124 FSNNQKEQSKDDVNRPVIPNDRITEADRSNDMKSLERQLSRTLYLLVKDKS-------GT 176
Query: 127 WHFPE-KVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQ 185
W FP + + + L AE L+ + GD +T+ V P+G V+Q +
Sbjct: 177 WKFPNFDLSDESKPLHVHAENELKLLSGDQIYTWSVSATPIG--VLQDERNRT-----AE 229
Query: 186 FFFKSQVIASNKFTI-----GKCEDFVWVTKDELMEYFPESAEFLNK 227
F KS ++A KF + EDF W+TK E+ EY P+ ++ NK
Sbjct: 230 FIVKSHILAG-KFDLVASKNDAFEDFAWLTKGEISEYVPK--DYFNK 273
>sp|O94398|RM17_SCHPO 54S ribosomal protein L17, mitochondrial OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=mrpl17 PE=3 SV=1
Length = 268
Score = 52.4 bits (124), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 39/146 (26%), Positives = 65/146 (44%), Gaps = 17/146 (11%)
Query: 88 RITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEK-VYESEESLRKCAEC 146
R+TE D ND +S R+LD+ LYL++ W FP V SE++L +
Sbjct: 135 RVTEADTKNDERSTLRSLDKSLYLLVKKSKSSG------WQFPNTPVTSSEKALHLLCQD 188
Query: 147 ALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFFKSQVIASNKF-TIGKCED 205
L+++L + S T+ V P+ + + K F +++++ + D
Sbjct: 189 LLKNILDENSLTWLVARHPLALLKTEQE---------KTFLLRARLLNGLDVPNLQNVYD 239
Query: 206 FVWVTKDELMEYFPESAEFLNKMIIS 231
+VW T DEL S+ K I+S
Sbjct: 240 WVWCTYDELKNKLSPSSWDSVKNILS 265
>sp|Q9PL79|TILS_CHLMU tRNA(Ile)-lysidine synthase OS=Chlamydia muridarum (strain MoPn /
Nigg) GN=tilS PE=3 SV=1
Length = 321
Score = 33.9 bits (76), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 35/121 (28%), Positives = 50/121 (41%), Gaps = 13/121 (10%)
Query: 78 DYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESE 137
+Y++EYV D TN + RA R E FG +P+ E E
Sbjct: 178 NYRIEYVQ-------DATNADERFLRARMREQLFPYLQEIFGKNIRQPLLFLAEDSAELR 230
Query: 138 ESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFFKSQVIASNK 197
E L + A L V+ + + P+G ++Q A V KQFFFK ++AS
Sbjct: 231 EYLDQQAAPFLSQVIDNEIGQFL----PVGQELLQTAFLTKWVC--KQFFFKQGLVASKG 284
Query: 198 F 198
F
Sbjct: 285 F 285
>sp|Q5AAG1|EPL1_CANAL Enhancer of polycomb-like protein 1 OS=Candida albicans (strain
SC5314 / ATCC MYA-2876) GN=EPL1 PE=3 SV=1
Length = 753
Score = 32.0 bits (71), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 23/91 (25%), Positives = 43/91 (47%), Gaps = 5/91 (5%)
Query: 128 HFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMP--DVPSYKQ 185
++P+K +S+E+ RKC E +++ L T A + M P+ + ++ SY
Sbjct: 175 YYPKKKNKSDENNRKCTELEFETICDKLEKTI---EARQPFLSMDPSNILSYEELSSYIV 231
Query: 186 FFFKSQVIASNKFTIGKCEDFVWVTKDELME 216
FKS V SN + + + +++ L E
Sbjct: 232 DQFKSAVKTSNPYIVTNGGNLEYISTTALKE 262
>sp|P60286|RPOC_STAAW DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain MW2) GN=rpoC PE=3 SV=1
Length = 1207
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 43/239 (17%)
Query: 5 LTSLVRPLTATRGFSTNSEKIVASVLFERLPVVIPKIDPVV------YAFQEFSFRWRQQ 58
LT ++ L F NS + ++ + LP++ P+I P+V +A + + +R+
Sbjct: 203 LTRAIKRLEVVESFR-NSGNKPSWMILDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRV 261
Query: 59 YRRRYPDEFLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETF 118
R N+R K ++ + AP I N+++ LQ A+D + G
Sbjct: 262 INR----------NNRLK---RLLDLGAPGII---VQNEKRMLQEAVDALIDNGRRGRPV 305
Query: 119 GAPGGKPIWHFPEKVYESEESLRKCAECALQSVLG---DLSHTYFVGNAPMGHMVMQPAE 175
PG +P+ + + R Q++LG D S + P M
Sbjct: 306 TGPGNRPLKSLSHMLKGKQGRFR-------QNLLGKRVDYSGRSVIAVGPSLKMYQCGLP 358
Query: 176 KMPDVPSYKQFFFKSQV---IASN----KFTIGKCEDFVWVTKDELMEYFPESAEFLNK 227
K + +K F K V IA+N K I + +D VW D L E E LN+
Sbjct: 359 KEMALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVW---DVLEEVIREHPVLLNR 414
>sp|Q6GBU4|RPOC_STAAS DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain MSSA476) GN=rpoC PE=3 SV=1
Length = 1207
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 43/239 (17%)
Query: 5 LTSLVRPLTATRGFSTNSEKIVASVLFERLPVVIPKIDPVV------YAFQEFSFRWRQQ 58
LT ++ L F NS + ++ + LP++ P+I P+V +A + + +R+
Sbjct: 203 LTRAIKRLEVVESFR-NSGNKPSWMILDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRV 261
Query: 59 YRRRYPDEFLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETF 118
R N+R K ++ + AP I N+++ LQ A+D + G
Sbjct: 262 INR----------NNRLK---RLLDLGAPGII---VQNEKRMLQEAVDALIDNGRRGRPV 305
Query: 119 GAPGGKPIWHFPEKVYESEESLRKCAECALQSVLG---DLSHTYFVGNAPMGHMVMQPAE 175
PG +P+ + + R Q++LG D S + P M
Sbjct: 306 TGPGNRPLKSLSHMLKGKQGRFR-------QNLLGKRVDYSGRSVIAVGPSLKMYQCGLP 358
Query: 176 KMPDVPSYKQFFFKSQV---IASN----KFTIGKCEDFVWVTKDELMEYFPESAEFLNK 227
K + +K F K V IA+N K I + +D VW D L E E LN+
Sbjct: 359 KEMALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVW---DVLEEVIREHPVLLNR 414
>sp|P60285|RPOC_STAAN DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain N315) GN=rpoC PE=1 SV=1
Length = 1207
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 43/239 (17%)
Query: 5 LTSLVRPLTATRGFSTNSEKIVASVLFERLPVVIPKIDPVV------YAFQEFSFRWRQQ 58
LT ++ L F NS + ++ + LP++ P+I P+V +A + + +R+
Sbjct: 203 LTRAIKRLEVVESFR-NSGNKPSWMILDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRV 261
Query: 59 YRRRYPDEFLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETF 118
R N+R K ++ + AP I N+++ LQ A+D + G
Sbjct: 262 INR----------NNRLK---RLLDLGAPGII---VQNEKRMLQEAVDALIDNGRRGRPV 305
Query: 119 GAPGGKPIWHFPEKVYESEESLRKCAECALQSVLG---DLSHTYFVGNAPMGHMVMQPAE 175
PG +P+ + + R Q++LG D S + P M
Sbjct: 306 TGPGNRPLKSLSHMLKGKQGRFR-------QNLLGKRVDYSGRSVIAVGPSLKMYQCGLP 358
Query: 176 KMPDVPSYKQFFFKSQV---IASN----KFTIGKCEDFVWVTKDELMEYFPESAEFLNK 227
K + +K F K V IA+N K I + +D VW D L E E LN+
Sbjct: 359 KEMALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVW---DVLEEVIREHPVLLNR 414
>sp|P60284|RPOC_STAAM DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain Mu50 / ATCC 700699) GN=rpoC PE=1 SV=1
Length = 1207
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 43/239 (17%)
Query: 5 LTSLVRPLTATRGFSTNSEKIVASVLFERLPVVIPKIDPVV------YAFQEFSFRWRQQ 58
LT ++ L F NS + ++ + LP++ P+I P+V +A + + +R+
Sbjct: 203 LTRAIKRLEVVESFR-NSGNKPSWMILDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRV 261
Query: 59 YRRRYPDEFLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETF 118
R N+R K ++ + AP I N+++ LQ A+D + G
Sbjct: 262 INR----------NNRLK---RLLDLGAPGII---VQNEKRMLQEAVDALIDNGRRGRPV 305
Query: 119 GAPGGKPIWHFPEKVYESEESLRKCAECALQSVLG---DLSHTYFVGNAPMGHMVMQPAE 175
PG +P+ + + R Q++LG D S + P M
Sbjct: 306 TGPGNRPLKSLSHMLKGKQGRFR-------QNLLGKRVDYSGRSVIAVGPSLKMYQCGLP 358
Query: 176 KMPDVPSYKQFFFKSQV---IASN----KFTIGKCEDFVWVTKDELMEYFPESAEFLNK 227
K + +K F K V IA+N K I + +D VW D L E E LN+
Sbjct: 359 KEMALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVW---DVLEEVIREHPVLLNR 414
>sp|Q5HID2|RPOC_STAAC DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain COL) GN=rpoC PE=3 SV=1
Length = 1207
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 43/239 (17%)
Query: 5 LTSLVRPLTATRGFSTNSEKIVASVLFERLPVVIPKIDPVV------YAFQEFSFRWRQQ 58
LT ++ L F NS + ++ + LP++ P+I P+V +A + + +R+
Sbjct: 203 LTRAIKRLEVVESFR-NSGNKPSWMILDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRV 261
Query: 59 YRRRYPDEFLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETF 118
R N+R K ++ + AP I N+++ LQ A+D + G
Sbjct: 262 INR----------NNRLK---RLLDLGAPGII---VQNEKRMLQEAVDALIDNGRRGRPV 305
Query: 119 GAPGGKPIWHFPEKVYESEESLRKCAECALQSVLG---DLSHTYFVGNAPMGHMVMQPAE 175
PG +P+ + + R Q++LG D S + P M
Sbjct: 306 TGPGNRPLKSLSHMLKGKQGRFR-------QNLLGKRVDYSGRSVIAVGPSLKMYQCGLP 358
Query: 176 KMPDVPSYKQFFFKSQV---IASN----KFTIGKCEDFVWVTKDELMEYFPESAEFLNK 227
K + +K F K V IA+N K I + +D VW D L E E LN+
Sbjct: 359 KEMALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVW---DVLEEVIREHPVLLNR 414
>sp|Q2G0N5|RPOC_STAA8 DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain NCTC 8325) GN=rpoC PE=3 SV=2
Length = 1207
Score = 31.2 bits (69), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 43/239 (17%)
Query: 5 LTSLVRPLTATRGFSTNSEKIVASVLFERLPVVIPKIDPVV------YAFQEFSFRWRQQ 58
LT ++ L F NS + ++ + LP++ P+I P+V +A + + +R+
Sbjct: 203 LTRAIKRLEVVESFR-NSGNKPSWMILDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRV 261
Query: 59 YRRRYPDEFLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETF 118
R N+R K ++ + AP I N+++ LQ A+D + G
Sbjct: 262 INR----------NNRLK---RLLDLGAPGII---VQNEKRMLQEAVDALIDNGRRGRPV 305
Query: 119 GAPGGKPIWHFPEKVYESEESLRKCAECALQSVLG---DLSHTYFVGNAPMGHMVMQPAE 175
PG +P+ + + R Q++LG D S + P M
Sbjct: 306 TGPGNRPLKSLSHMLKGKQGRFR-------QNLLGKRVDYSGRSVIAVGPSLKMYQCGLP 358
Query: 176 KMPDVPSYKQFFFKSQV---IASN----KFTIGKCEDFVWVTKDELMEYFPESAEFLNK 227
K + +K F K V IA+N K I + +D VW D L E E LN+
Sbjct: 359 KEMALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVW---DVLEEVIREHPVLLNR 414
>sp|Q6GJC5|RPOC_STAAR DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain MRSA252) GN=rpoC PE=3 SV=1
Length = 1207
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 43/239 (17%)
Query: 5 LTSLVRPLTATRGFSTNSEKIVASVLFERLPVVIPKIDPVV------YAFQEFSFRWRQQ 58
LT ++ L F NS + ++ + LP++ P+I P+V +A + + +R+
Sbjct: 203 LTRAIKRLEVVESFR-NSGNKPSWMILDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRV 261
Query: 59 YRRRYPDEFLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETF 118
R N+R K ++ + AP I N+++ LQ A+D + G
Sbjct: 262 INR----------NNRLK---RLLDLGAPGII---VQNEKRMLQEAVDALIDNGRRGRPV 305
Query: 119 GAPGGKPIWHFPEKVYESEESLRKCAECALQSVLG---DLSHTYFVGNAPMGHMVMQPAE 175
PG +P+ + + R Q++LG D S + P M
Sbjct: 306 TGPGNRPLKSLSHMLKGKQGRFR-------QNLLGKRVDYSGRSVIAVGPSLKMYQCGLP 358
Query: 176 KMPDVPSYKQFFFKSQV---IASN----KFTIGKCEDFVWVTKDELMEYFPESAEFLNK 227
K + +K F K V IA+N K I + +D VW D L E E LN+
Sbjct: 359 KEMALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVW---DVLEEVIREHPVLLNR 414
>sp|Q2YSB8|RPOC_STAAB DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain bovine RF122 / ET3-1) GN=rpoC PE=3 SV=1
Length = 1207
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 43/239 (17%)
Query: 5 LTSLVRPLTATRGFSTNSEKIVASVLFERLPVVIPKIDPVV------YAFQEFSFRWRQQ 58
LT ++ L F NS + ++ + LP++ P+I P+V +A + + +R+
Sbjct: 203 LTRAIKRLEVVESFR-NSGNKPSWMILDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRV 261
Query: 59 YRRRYPDEFLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETF 118
R N+R K ++ + AP I N+++ LQ A+D + G
Sbjct: 262 INR----------NNRLK---RLLDLGAPGII---VQNEKRMLQEAVDALIDNGRRGRPV 305
Query: 119 GAPGGKPIWHFPEKVYESEESLRKCAECALQSVLG---DLSHTYFVGNAPMGHMVMQPAE 175
PG +P+ + + R Q++LG D S + P M
Sbjct: 306 TGPGNRPLKSLSHMLKGKQGRFR-------QNLLGKRVDYSGRSVIAVGPSLKMYQCGLP 358
Query: 176 KMPDVPSYKQFFFKSQV---IASN----KFTIGKCEDFVWVTKDELMEYFPESAEFLNK 227
K + +K F K V IA+N K I + +D VW D L E E LN+
Sbjct: 359 KEMALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVW---DVLEEVIREHPVLLNR 414
>sp|Q2FJ97|RPOC_STAA3 DNA-directed RNA polymerase subunit beta' OS=Staphylococcus aureus
(strain USA300) GN=rpoC PE=3 SV=2
Length = 1207
Score = 31.2 bits (69), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 43/239 (17%)
Query: 5 LTSLVRPLTATRGFSTNSEKIVASVLFERLPVVIPKIDPVV------YAFQEFSFRWRQQ 58
LT ++ L F NS + ++ + LP++ P+I P+V +A + + +R+
Sbjct: 203 LTRAIKRLEVVESFR-NSGNKPSWMILDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRV 261
Query: 59 YRRRYPDEFLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETF 118
R N+R K ++ + AP I N+++ LQ A+D + G
Sbjct: 262 INR----------NNRLK---RLLDLGAPGII---VQNEKRMLQEAVDALIDNGRRGRPV 305
Query: 119 GAPGGKPIWHFPEKVYESEESLRKCAECALQSVLG---DLSHTYFVGNAPMGHMVMQPAE 175
PG +P+ + + R Q++LG D S + P M
Sbjct: 306 TGPGNRPLKSLSHMLKGKQGRFR-------QNLLGKRVDYSGRSVIAVGPSLKMYQCGLP 358
Query: 176 KMPDVPSYKQFFFKSQV---IASN----KFTIGKCEDFVWVTKDELMEYFPESAEFLNK 227
K + +K F K V IA+N K I + +D VW D L E E LN+
Sbjct: 359 KEMALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVW---DVLEEVIREHPVLLNR 414
>sp|A8ZXB6|TIG_DESOH Trigger factor OS=Desulfococcus oleovorans (strain DSM 6200 / Hxd3)
GN=tig PE=3 SV=1
Length = 443
Score = 31.2 bits (69), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 36/139 (25%), Positives = 55/139 (39%), Gaps = 24/139 (17%)
Query: 94 KTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLG 153
KT RK+LQ DRR L+ + F A K + PE + + E L +L
Sbjct: 269 KTEIRKNLQSGYDRRGEQELHEQVFTALLEKTSFEVPETMVQHE----------LDGILD 318
Query: 154 DLSHTYFVGN---APMGHMVMQPAEKMPD--VPSYKQFFFKSQVIASNKFTIGKCEDFVW 208
++ TY N +G +EK D V K+ +++I K I
Sbjct: 319 EIDRTYSAYNLSLEALGQTKEALSEKYRDTAVKQAKRHLILNKIIDQEKMAI-------- 370
Query: 209 VTKDELMEYFPESAEFLNK 227
+ DEL E F A+ + +
Sbjct: 371 -SDDELAEGFESIAKSMGQ 388
>sp|Q4L3K4|RPOC_STAHJ DNA-directed RNA polymerase subunit beta' OS=Staphylococcus
haemolyticus (strain JCSC1435) GN=rpoC PE=3 SV=1
Length = 1206
Score = 31.2 bits (69), Expect = 6.3, Method: Compositional matrix adjust.
Identities = 57/239 (23%), Positives = 94/239 (39%), Gaps = 43/239 (17%)
Query: 5 LTSLVRPLTATRGFSTNSEKIVASVLFERLPVVIPKIDPVV------YAFQEFSFRWRQQ 58
LT ++ L F NS A ++ + LP++ P+I P+V +A + + +R+
Sbjct: 203 LTRAIKRLEVVESFR-NSGNNPAWMILDVLPIIPPEIRPMVQLDGGRFATSDLNDLYRRV 261
Query: 59 YRRRYPDEFLDKSNSRGKGDYQMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETF 118
R N+R K ++ + AP I N+++ LQ A+D + G
Sbjct: 262 INR----------NNRLK---RLLDLGAPGII---VQNEKRMLQEAVDALIDNGRRGRPV 305
Query: 119 GAPGGKPIWHFPEKVYESEESLRKCAECALQSVLG---DLSHTYFVGNAPMGHMVMQPAE 175
PG +P+ + + R Q++LG D S + P M
Sbjct: 306 TGPGNRPLKSLSHMLKGKQGRFR-------QNLLGKRVDYSGRSVIAVGPSLKMYQCGLP 358
Query: 176 KMPDVPSYKQFFFKSQV---IASN----KFTIGKCEDFVWVTKDELMEYFPESAEFLNK 227
K + +K F K V IA+N K I + +D VW D L + E LN+
Sbjct: 359 KEMALELFKPFVMKELVQREIATNIKNAKSKIERMDDEVW---DVLEDVIREHPVLLNR 414
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.321 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,261,439
Number of Sequences: 539616
Number of extensions: 3660852
Number of successful extensions: 7273
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 7253
Number of HSP's gapped (non-prelim): 23
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)