Query 026891
Match_columns 231
No_of_seqs 249 out of 918
Neff 6.9
Searched_HMMs 46136
Date Fri Mar 29 14:10:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026891.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026891hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4548 Mitochondrial ribosoma 100.0 8.5E-45 1.8E-49 309.0 9.5 209 19-231 22-262 (263)
2 cd04661 MRP_L46 Mitochondrial 100.0 4.2E-33 9.1E-38 220.7 13.7 129 96-228 1-132 (132)
3 PRK15434 GDP-mannose mannosyl 99.7 1.6E-17 3.5E-22 136.0 12.7 107 107-218 28-138 (159)
4 cd03673 Ap6A_hydrolase Diadeno 99.7 2.6E-17 5.6E-22 127.9 12.5 113 106-229 14-130 (131)
5 PRK15472 nucleoside triphospha 99.7 8.6E-17 1.9E-21 127.9 12.0 119 107-227 14-137 (141)
6 PRK10546 pyrimidine (deoxy)nuc 99.7 3.6E-16 7.8E-21 122.8 13.1 111 107-229 14-126 (135)
7 PRK09438 nudB dihydroneopterin 99.7 1.9E-16 4E-21 127.0 10.2 115 107-229 18-143 (148)
8 cd04679 Nudix_Hydrolase_20 Mem 99.7 6.1E-16 1.3E-20 120.2 12.1 104 108-221 14-120 (125)
9 cd04680 Nudix_Hydrolase_21 Mem 99.7 6E-16 1.3E-20 118.8 11.3 104 108-226 12-118 (120)
10 cd04669 Nudix_Hydrolase_11 Mem 99.7 7.8E-16 1.7E-20 119.7 11.8 94 108-218 12-115 (121)
11 cd03428 Ap4A_hydrolase_human_l 99.7 6.1E-16 1.3E-20 120.7 11.0 110 106-227 15-127 (130)
12 cd03427 MTH1 MutT homolog-1 (M 99.7 7.7E-16 1.7E-20 121.2 11.5 113 107-229 11-125 (137)
13 cd04696 Nudix_Hydrolase_37 Mem 99.7 1.3E-15 2.8E-20 118.6 12.1 102 108-218 14-115 (125)
14 cd04673 Nudix_Hydrolase_15 Mem 99.7 1.2E-15 2.6E-20 117.3 11.7 105 107-218 10-115 (122)
15 cd04684 Nudix_Hydrolase_25 Con 99.7 1.4E-15 3.1E-20 117.6 12.2 105 107-218 10-118 (128)
16 cd03675 Nudix_Hydrolase_2 Cont 99.7 1.6E-15 3.5E-20 119.1 12.5 113 107-230 10-129 (134)
17 cd03430 GDPMH GDP-mannose glyc 99.7 1.6E-15 3.5E-20 121.7 12.7 106 108-218 24-133 (144)
18 cd03671 Ap4A_hydrolase_plant_l 99.6 2.1E-15 4.6E-20 121.0 11.6 115 108-228 15-143 (147)
19 cd04695 Nudix_Hydrolase_36 Mem 99.6 2.4E-15 5.2E-20 118.3 11.4 113 106-228 12-127 (131)
20 PLN02325 nudix hydrolase 99.6 2.3E-15 5.1E-20 120.9 11.6 114 107-228 19-137 (144)
21 cd04678 Nudix_Hydrolase_19 Mem 99.6 4.6E-15 9.9E-20 115.8 12.7 111 108-229 14-128 (129)
22 cd04683 Nudix_Hydrolase_24 Mem 99.6 2.5E-15 5.4E-20 115.8 11.0 104 107-218 10-115 (120)
23 cd04687 Nudix_Hydrolase_28 Mem 99.6 3.4E-15 7.3E-20 116.7 11.8 104 107-218 11-122 (128)
24 TIGR00586 mutt mutator mutT pr 99.6 7E-15 1.5E-19 114.0 13.0 110 108-229 16-127 (128)
25 cd04681 Nudix_Hydrolase_22 Mem 99.6 3E-15 6.4E-20 116.9 10.8 114 108-229 13-130 (130)
26 cd04691 Nudix_Hydrolase_32 Mem 99.6 4.6E-15 1E-19 114.7 11.3 102 107-220 10-111 (117)
27 PF11788 MRP-L46: 39S mitochon 99.6 6.1E-16 1.3E-20 119.4 6.0 46 23-68 1-46 (111)
28 cd04664 Nudix_Hydrolase_7 Memb 99.6 3.3E-15 7.1E-20 116.7 9.9 104 106-218 13-119 (129)
29 cd04672 Nudix_Hydrolase_14 Mem 99.6 6.9E-15 1.5E-19 114.2 11.6 103 108-220 13-116 (123)
30 cd04700 DR1025_like DR1025 fro 99.6 6.6E-15 1.4E-19 117.8 11.8 99 109-218 26-126 (142)
31 PRK10776 nucleoside triphospha 99.6 1.6E-14 3.6E-19 111.6 13.4 110 107-228 15-126 (129)
32 cd03674 Nudix_Hydrolase_1 Memb 99.6 1.3E-14 2.8E-19 115.3 13.0 116 108-229 15-137 (138)
33 cd04682 Nudix_Hydrolase_23 Mem 99.6 8.5E-15 1.8E-19 113.6 11.3 103 107-218 11-115 (122)
34 cd04689 Nudix_Hydrolase_30 Mem 99.6 8.7E-15 1.9E-19 113.7 11.3 101 106-217 10-114 (125)
35 cd04688 Nudix_Hydrolase_29 Mem 99.6 1E-14 2.2E-19 113.5 11.4 100 108-218 12-119 (126)
36 cd04671 Nudix_Hydrolase_13 Mem 99.6 1.2E-14 2.5E-19 113.8 11.7 100 107-221 11-115 (123)
37 cd04666 Nudix_Hydrolase_9 Memb 99.6 1.1E-14 2.4E-19 113.9 11.5 102 107-218 14-116 (122)
38 cd03425 MutT_pyrophosphohydrol 99.6 2.7E-14 5.9E-19 109.0 13.1 107 108-226 13-121 (124)
39 PRK00714 RNA pyrophosphohydrol 99.6 1.4E-14 2.9E-19 118.0 11.7 116 107-228 19-147 (156)
40 cd03429 NADH_pyrophosphatase N 99.6 1E-14 2.2E-19 115.1 10.5 95 108-217 12-107 (131)
41 cd03672 Dcp2p mRNA decapping e 99.6 3.9E-15 8.4E-20 119.9 8.0 95 108-218 14-112 (145)
42 cd04676 Nudix_Hydrolase_17 Mem 99.6 3.1E-14 6.7E-19 109.8 12.1 108 108-225 14-127 (129)
43 cd04511 Nudix_Hydrolase_4 Memb 99.6 2.7E-14 5.9E-19 112.1 11.4 95 107-215 23-117 (130)
44 cd04667 Nudix_Hydrolase_10 Mem 99.6 2.8E-14 6.1E-19 109.0 11.1 94 107-220 10-105 (112)
45 cd04693 Nudix_Hydrolase_34 Mem 99.6 1.8E-14 4E-19 112.3 9.3 102 107-218 11-114 (127)
46 cd04690 Nudix_Hydrolase_31 Mem 99.6 4.2E-14 9.1E-19 108.4 11.0 100 108-218 12-111 (118)
47 PF00293 NUDIX: NUDIX domain; 99.6 3.1E-14 6.6E-19 110.3 10.2 114 109-229 15-133 (134)
48 cd04670 Nudix_Hydrolase_12 Mem 99.6 7.4E-14 1.6E-18 108.8 12.3 98 108-218 14-114 (127)
49 COG1051 ADP-ribose pyrophospha 99.6 3.8E-14 8.3E-19 114.3 10.7 100 109-218 22-123 (145)
50 cd04697 Nudix_Hydrolase_38 Mem 99.5 8.3E-14 1.8E-18 108.9 10.9 100 108-218 12-113 (126)
51 cd04677 Nudix_Hydrolase_18 Mem 99.5 6.9E-14 1.5E-18 109.1 10.4 100 108-218 19-123 (132)
52 cd03426 CoAse Coenzyme A pyrop 99.5 6.2E-14 1.3E-18 114.0 10.5 102 107-218 15-119 (157)
53 cd04699 Nudix_Hydrolase_39 Mem 99.5 6.9E-14 1.5E-18 108.3 9.9 103 108-218 13-115 (129)
54 PRK05379 bifunctional nicotina 99.5 1.3E-13 2.8E-18 125.4 12.8 119 107-229 213-338 (340)
55 cd04692 Nudix_Hydrolase_33 Mem 99.5 1E-13 2.2E-18 110.7 9.9 108 108-218 17-128 (144)
56 PRK00241 nudC NADH pyrophospha 99.5 2.9E-13 6.3E-18 118.7 11.5 105 108-228 143-248 (256)
57 cd04686 Nudix_Hydrolase_27 Mem 99.5 3.3E-13 7.2E-18 106.3 10.7 103 107-218 10-120 (131)
58 cd03424 ADPRase_NUDT5 ADP-ribo 99.5 2.3E-13 4.9E-18 107.2 9.8 100 108-218 14-116 (137)
59 cd04694 Nudix_Hydrolase_35 Mem 99.5 4.3E-13 9.4E-18 107.9 11.0 111 107-218 12-132 (143)
60 cd02885 IPP_Isomerase Isopente 99.4 4.9E-13 1.1E-17 109.5 9.7 107 108-218 42-149 (165)
61 PRK15393 NUDIX hydrolase YfcD; 99.4 1.7E-12 3.8E-17 108.0 11.7 109 108-227 49-163 (180)
62 PRK08999 hypothetical protein; 99.4 3.1E-12 6.7E-17 114.5 13.2 109 108-228 17-127 (312)
63 cd02883 Nudix_Hydrolase Nudix 99.4 2.6E-12 5.7E-17 97.0 10.8 100 108-218 12-113 (123)
64 cd04685 Nudix_Hydrolase_26 Mem 99.4 3.5E-12 7.5E-17 101.3 10.3 102 108-217 12-123 (133)
65 cd04662 Nudix_Hydrolase_5 Memb 99.4 1.1E-11 2.4E-16 97.7 11.4 100 108-210 15-125 (126)
66 PRK03759 isopentenyl-diphospha 99.3 5.6E-12 1.2E-16 105.2 10.0 106 108-218 46-153 (184)
67 PRK11762 nudE adenosine nucleo 99.3 1E-11 2.2E-16 103.7 10.9 101 107-218 58-160 (185)
68 TIGR02150 IPP_isom_1 isopenten 99.3 1.1E-11 2.3E-16 101.1 9.1 103 108-218 39-143 (158)
69 cd04674 Nudix_Hydrolase_16 Mem 99.3 5.3E-11 1.1E-15 92.9 10.8 91 110-212 17-110 (118)
70 cd04665 Nudix_Hydrolase_8 Memb 99.3 3.8E-11 8.2E-16 93.6 9.9 93 107-215 10-103 (118)
71 cd03670 ADPRase_NUDT9 ADP-ribo 99.2 7.2E-11 1.6E-15 99.0 9.9 145 79-229 17-183 (186)
72 TIGR02705 nudix_YtkD nucleosid 99.2 1.4E-10 3E-15 94.7 10.8 93 108-218 35-128 (156)
73 cd03676 Nudix_hydrolase_3 Memb 99.2 7E-11 1.5E-15 98.0 9.0 109 108-218 48-159 (180)
74 TIGR00052 nudix-type nucleosid 99.2 1.2E-10 2.6E-15 97.6 8.7 104 106-218 55-166 (185)
75 cd04663 Nudix_Hydrolase_6 Memb 99.2 1.8E-10 3.9E-15 90.9 9.2 42 109-157 15-56 (126)
76 PRK10707 putative NUDIX hydrol 99.1 9.3E-10 2E-14 92.6 11.6 101 108-218 44-147 (190)
77 cd03431 DNA_Glycosylase_C DNA 99.1 1.9E-09 4.1E-14 81.8 11.4 96 107-220 13-109 (118)
78 PRK10729 nudF ADP-ribose pyrop 99.0 2.1E-09 4.6E-14 91.2 11.4 101 108-218 62-172 (202)
79 PLN02709 nudix hydrolase 99.0 4.8E-09 1E-13 90.1 11.0 99 108-217 51-155 (222)
80 COG0494 MutT NTP pyrophosphohy 98.9 1.2E-08 2.7E-13 78.2 9.7 104 108-218 24-135 (161)
81 KOG2839 Diadenosine and diphos 98.8 7.4E-09 1.6E-13 82.6 6.8 100 108-218 24-126 (145)
82 PRK15009 GDP-mannose pyrophosp 98.7 1.2E-07 2.6E-12 79.8 9.8 102 107-218 57-167 (191)
83 COG2816 NPY1 NTP pyrophosphohy 98.7 1.9E-08 4E-13 88.7 4.2 93 110-218 157-251 (279)
84 PLN02552 isopentenyl-diphospha 98.6 5.6E-07 1.2E-11 78.7 11.9 108 108-217 68-203 (247)
85 PLN03143 nudix hydrolase; Prov 98.5 6.3E-07 1.4E-11 80.0 9.9 105 108-218 143-266 (291)
86 KOG3084 NADH pyrophosphatase I 98.5 1.8E-07 3.8E-12 83.3 6.0 97 108-218 200-299 (345)
87 PLN02791 Nudix hydrolase homol 98.5 8.2E-07 1.8E-11 88.3 10.1 108 108-218 45-159 (770)
88 PF14815 NUDIX_4: NUDIX domain 98.5 9.7E-07 2.1E-11 67.6 8.4 100 106-220 7-107 (114)
89 KOG0648 Predicted NUDIX hydrol 97.9 7E-06 1.5E-10 72.9 2.8 125 86-218 104-232 (295)
90 COG4119 Predicted NTP pyrophos 97.9 5.1E-05 1.1E-09 59.6 6.6 115 101-228 10-147 (161)
91 KOG3041 Nucleoside diphosphate 97.5 0.00056 1.2E-08 57.6 8.1 127 83-218 60-195 (225)
92 KOG4195 Transient receptor pot 97.3 0.00084 1.8E-08 57.5 7.1 109 110-226 141-265 (275)
93 COG1443 Idi Isopentenyldiphosp 97.0 0.0031 6.8E-08 52.2 7.0 117 96-218 27-154 (185)
94 PLN02839 nudix hydrolase 96.9 0.004 8.6E-08 57.3 8.2 94 123-218 232-328 (372)
95 KOG3069 Peroxisomal NUDIX hydr 96.7 0.0057 1.2E-07 52.9 6.9 99 109-218 59-164 (246)
96 KOG2937 Decapping enzyme compl 95.5 0.0052 1.1E-07 55.5 1.0 92 110-217 97-192 (348)
97 PRK10880 adenine DNA glycosyla 94.5 0.097 2.1E-06 48.2 6.5 95 106-220 240-335 (350)
98 KOG0142 Isopentenyl pyrophosph 93.7 0.15 3.3E-06 43.3 5.5 78 138-218 103-184 (225)
99 PF13869 NUDIX_2: Nucleotide h 93.6 0.6 1.3E-05 39.3 8.8 48 109-163 59-109 (188)
100 KOG1689 mRNA cleavage factor I 84.5 1.5 3.2E-05 36.4 4.0 30 124-153 93-122 (221)
101 PRK13910 DNA glycosylase MutY; 83.5 3.5 7.5E-05 37.0 6.3 82 107-226 196-279 (289)
102 KOG4432 Uncharacterized NUDIX 71.4 6.6 0.00014 35.5 4.4 61 126-193 80-140 (405)
103 COG4112 Predicted phosphoester 62.8 22 0.00048 29.4 5.5 99 109-217 73-187 (203)
104 COG1194 MutY A/G-specific DNA 57.7 11 0.00023 34.8 3.2 30 105-136 244-273 (342)
105 PF14443 DBC1: DBC1 53.7 57 0.0012 25.7 6.3 36 123-158 22-60 (126)
106 TIGR01084 mutY A/G-specific ad 50.5 21 0.00045 31.8 3.8 25 106-132 237-261 (275)
107 PF13358 DDE_3: DDE superfamil 45.6 24 0.00053 26.5 3.1 26 27-52 106-131 (146)
108 PF14044 NETI: NETI protein 39.9 25 0.00053 23.9 2.0 19 132-151 2-20 (57)
109 KOG2937 Decapping enzyme compl 38.6 6.8 0.00015 35.8 -1.1 42 124-165 263-304 (348)
110 COG0828 RpsU Ribosomal protein 34.5 32 0.0007 24.1 1.9 18 129-146 1-18 (67)
111 PF07026 DUF1317: Protein of u 26.0 56 0.0012 22.3 1.9 24 125-151 22-45 (60)
112 KOG4313 Thiamine pyrophosphoki 23.2 1.4E+02 0.003 26.6 4.3 88 129-218 169-259 (306)
113 KOG2457 A/G-specific adenine D 22.4 51 0.0011 31.1 1.6 46 107-154 386-434 (555)
114 PRK00270 rpsU 30S ribosomal pr 21.5 77 0.0017 21.9 2.0 17 130-146 2-18 (64)
115 TIGR00030 S21p ribosomal prote 20.9 80 0.0017 21.3 1.9 17 130-146 1-17 (58)
No 1
>KOG4548 consensus Mitochondrial ribosomal protein L17 [Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=8.5e-45 Score=309.00 Aligned_cols=209 Identities=39% Similarity=0.617 Sum_probs=167.9
Q ss_pred cCCCcceEEEEEEeecCccCCCCCHHHHHHHHHHHHHHH-----------------------HHH--ccCCcccccccCc
Q 026891 19 STNSEKIVASVLFERLPVVIPKIDPVVYAFQEFSFRWRQ-----------------------QYR--RRYPDEFLDKSNS 73 (231)
Q Consensus 19 ~~~~~~i~~av~l~R~Pvv~~~~~~~E~~~~~~~~~~~~-----------------------~~~--~~~~~~~~~~~~~ 73 (231)
|+.+|+|+|+|+|+|+|||+++||++|+.|+.++.+..+ +++ ...+|+++.....
T Consensus 22 ss~p~~~~~gvll~R~Pvv~~~~se~EK~~~~ll~e~e~e~sl~~dhel~~~qe~~~~~~q~~~~~e~~~eDe~~~i~~~ 101 (263)
T KOG4548|consen 22 SSQPWKIFAGVLLSRLPVVAPPLSELEKRFYSLLMELEQEKSLKPDHELKAFQEEKEKAWQAQLRKEVDEEDEFIGITAN 101 (263)
T ss_pred CCCchhhhHHhhhhhcccccCCCCHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHHHHHHhhcccchhhHHHHH
Confidence 446699999999999999999999999999999744322 111 2233444333322
Q ss_pred CCCCcc---cCCCCCCCCCCcccccCCCcchhhhcCCcEEEEEeccCCCCCCCCCceecCceec-CCCCCHHHHHHHHHH
Q 026891 74 RGKGDY---QMEYVPAPRITETDKTNDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVY-ESEESLRKCAECALQ 149 (231)
Q Consensus 74 ~~~~~~---~~~~~p~~r~T~aD~~~d~~Sl~R~L~~~l~LLVkr~~~g~~~~~~~W~FP~G~v-e~gEtl~qaA~Rel~ 149 (231)
..++++ ..+|+-..|+||||.+||++||+|+||++|||||+++ .| ..+.|.||.+.+ +.|+|++.+|+|+|+
T Consensus 102 ~~kd~~~~~~~~~~~~~RiTEaD~kNd~kSl~R~Ldr~LyLLV~~k-~g---~~s~w~fP~~~~s~~~~~lr~~ae~~Lk 177 (263)
T KOG4548|consen 102 DRKDMWKKDLLDFDLPFRITEADPKNDRKSLERELDRKLYLLVKRK-FG---KSSVWIFPNRQFSSSEKTLRGHAERDLK 177 (263)
T ss_pred HHHHHHHHHhhcccccccccCCCcccchhHHHHHhcceEEEEEeec-cC---ccceeeCCCcccCCccchHHHHHHHHHH
Confidence 223333 3344444499999999999999999999999999965 44 678999999999 999999999999999
Q ss_pred HHhCCCeeEEEecccceEEEEecCCCCCCC--CCceEEEEEEEEEeCCcccccCcccceeeecHHhhcccC-cchHHHHH
Q 026891 150 SVLGDLSHTYFVGNAPMGHMVMQPAEKMPD--VPSYKQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEYF-PESAEFLN 226 (231)
Q Consensus 150 Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~--~~g~kvfff~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~-p~~~~~v~ 226 (231)
..+|.++.+||+||+|||++.|++|..... .+|.++|||+|.++.|+..-.....||.|||++||.+++ +.++..++
T Consensus 178 ~~~ge~~~t~fvgnaP~g~~~~q~pr~~~~e~~~~sk~ff~k~~lv~~~~~kn~n~edfvWvTkdel~e~l~~~~~~~vK 257 (263)
T KOG4548|consen 178 VLSGENKSTWFVGNAPFGHTPLQSPREMTTEEPVSSKVFFFKASLVANSNQKNQNKEDFVWVTKDELGEKLPKFAKAQVK 257 (263)
T ss_pred HHhcchhhhheeccCccccccccCcccccccccccceeEEeeeeeccccchhcccccceEEechHHHhhhcchHHHHhhh
Confidence 999999999999999999999999877643 468999999999999976544467799999999999999 56666666
Q ss_pred hhhcC
Q 026891 227 KMIIS 231 (231)
Q Consensus 227 ~~l~~ 231 (231)
.||.|
T Consensus 258 ~ilsD 262 (263)
T KOG4548|consen 258 HILSD 262 (263)
T ss_pred hhccC
Confidence 66554
No 2
>cd04661 MRP_L46 Mitochondrial ribosomal protein L46 (MRP L46) is a component of the large subunit (39S) of the mammalian mitochondrial ribosome and a member of the Nudix hydrolase superfamily. MRPs are thought to be involved in the maintenance of the mitochondrial DNA. In general, members of the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for activity and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. MRP L46 appears to contain a modified nudix motif.
Probab=100.00 E-value=4.2e-33 Score=220.68 Aligned_cols=129 Identities=33% Similarity=0.546 Sum_probs=114.8
Q ss_pred CCCcchhhhcCCcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCC
Q 026891 96 NDRKSLQRALDRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAE 175 (231)
Q Consensus 96 ~d~~Sl~R~L~~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~ 175 (231)
||++||+|+|++++|||||++. +..|.|.||+|++++|||+++||+|||+||+|+.+++++++++|++++.|.++.
T Consensus 1 ~~~~~~~r~~~~~~~Llvk~~~----~~~g~W~fPgG~ve~gEt~~eaa~REl~EEtGl~v~~~~i~~~~~~~~~~~~~~ 76 (132)
T cd04661 1 NDRKSLDRKLDDTLVLLVQQKV----GSQNHWILPQGKREEGETLRQTAERTLKELCGNNLKAKFYGNAPVGFYKYKYPK 76 (132)
T ss_pred CCccchhhcccCcEEEEEEeec----CCCCeeECCcccccCCCCHHHHHHHHHHHhhCCCceEEEEEecCcEEEEEecCc
Confidence 7999999999999999999862 246899999999999999999999999999999999988999999999988764
Q ss_pred CCC--CCCceEEEEEEEEEeCCcccccCcccceeeecHHhhcccC-cchHHHHHhh
Q 026891 176 KMP--DVPSYKQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEYF-PESAEFLNKM 228 (231)
Q Consensus 176 ~~~--~~~g~kvfff~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~-p~~~~~v~~~ 228 (231)
... +.++.++|||+|++++|++.+..++.+++|++++||.+++ +.++.+|++|
T Consensus 77 ~~~~~~~~~~~~~~f~~~~~~g~~~~~~e~~~~~W~~~~el~~~l~~~~~~~~~~~ 132 (132)
T cd04661 77 AVRNEGIVGAKVFFFKARYMSGQFELSQNQVDFKWLAKEELQKYLNPPYLQSVKKF 132 (132)
T ss_pred ccccccCcccEEEEEEEEEecCccccCCCcceeEecCHHHHHhhcCHHHHHHHhcC
Confidence 321 2457899999999999988766789999999999999999 7888999887
No 3
>PRK15434 GDP-mannose mannosyl hydrolase NudD; Provisional
Probab=99.75 E-value=1.6e-17 Score=135.97 Aligned_cols=107 Identities=18% Similarity=0.221 Sum_probs=78.5
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCC--C-CCce
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMP--D-VPSY 183 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~--~-~~g~ 183 (231)
+..|||+||.. .+..|.|+||||+++.|||+.+||.||++||+|+++.+.. ..+++++.+.+..... + ....
T Consensus 28 ~g~VLL~kR~~---~~~~g~W~lPGG~VE~GEt~~~Aa~REl~EEtGl~v~~~~--~~~~~~~~~~~~~~~~~~~~~~~~ 102 (159)
T PRK15434 28 RGEFLLGKRTN---RPAQGYWFVPGGRVQKDETLEAAFERLTMAELGLRLPITA--GQFYGVWQHFYDDNFSGTDFTTHY 102 (159)
T ss_pred CCEEEEEEccC---CCCCCcEECCceecCCCCCHHHHHHHHHHHHHCCcccccc--ceEEEEEEeecccccCCCccceEE
Confidence 46799999862 2456899999999999999999999999999999875321 1223433332221100 0 1246
Q ss_pred EEEEEEEEEeCCccccc-CcccceeeecHHhhcccC
Q 026891 184 KQFFFKSQVIASNKFTI-GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 184 kvfff~a~~~~G~~~~~-~e~~d~~Wvt~eEl~~~~ 218 (231)
.+++|.|.+.+|.+.+. +++.+++|++.+|+..+.
T Consensus 103 i~~~f~~~~~~g~~~~~~~E~~~~~W~~~~el~~~~ 138 (159)
T PRK15434 103 VVLGFRLRVAEEDLLLPDEQHDDYRWLTPDALLASD 138 (159)
T ss_pred EEEEEEEEecCCcccCChHHeeEEEEEeHHHhhhcc
Confidence 78899999988887654 379999999999998864
No 4
>cd03673 Ap6A_hydrolase Diadenosine hexaphosphate (Ap6A) hydrolase is a member of the Nudix hydrolase superfamily. Ap6A hydrolase specifically hydrolyzes diadenosine polyphosphates, but not ATP or diadenosine triphosphate, and it generates ATP as the product. Ap6A, the most preferred substrate, hydrolyzes to produce two ATP molecules, which is a novel hydrolysis mode for Ap6A. These results indicate that Ap6A hydrolase is a diadenosine polyphosphate hydrolase. It requires the presence of a divalent cation, such as Mn2+, Mg2+, Zn2+, and Co2+, for activity. Members of the Nudix superfamily are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site.
Probab=99.74 E-value=2.6e-17 Score=127.93 Aligned_cols=113 Identities=13% Similarity=0.202 Sum_probs=87.4
Q ss_pred CCcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEE
Q 026891 106 DRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQ 185 (231)
Q Consensus 106 ~~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kv 185 (231)
++..+||+++.. .+.|.||||.++.|||+.+||.||++||+|+++... ..++.+.|.++... ......+
T Consensus 14 ~~~~vLl~~~~~------~~~w~~PgG~v~~gEs~~~aa~REl~EEtGl~~~~~----~~~~~~~~~~~~~~-~~~~~~~ 82 (131)
T cd03673 14 GGIEVLLIHRPR------GDDWSLPKGKLEPGETPPEAAVREVEEETGIRAEVG----DPLGTIRYWFSSSG-KRVHKTV 82 (131)
T ss_pred CCeEEEEEEcCC------CCcccCCCCccCCCCCHHHHHHHHHhhhhCCceEec----ceEEEEEEeccCCC-CCcceEE
Confidence 457899999862 378999999999999999999999999999987653 13444444443211 1235788
Q ss_pred EEEEEEEeCCccc--ccCcccceeeecHHhhcccC--cchHHHHHhhh
Q 026891 186 FFFKSQVIASNKF--TIGKCEDFVWVTKDELMEYF--PESAEFLNKMI 229 (231)
Q Consensus 186 fff~a~~~~G~~~--~~~e~~d~~Wvt~eEl~~~~--p~~~~~v~~~l 229 (231)
+||.|....+... ..+++.++.|++.+|+.+++ |.+..++.+++
T Consensus 83 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 130 (131)
T cd03673 83 HWWLMRALGGEFTPQPDEEVDEVRWLPPDEARDRLSYPNDRELLRAAL 130 (131)
T ss_pred EEEEEEEcCCCcccCCCCcEEEEEEcCHHHHHHHcCCHhHHHHHHHhh
Confidence 9999998877765 34588899999999999988 77788887765
No 5
>PRK15472 nucleoside triphosphatase NudI; Provisional
Probab=99.72 E-value=8.6e-17 Score=127.93 Aligned_cols=119 Identities=13% Similarity=0.157 Sum_probs=77.7
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecc-cceEEE-EecCCCCCCCCCceE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGN-APMGHM-VMQPAEKMPDVPSYK 184 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~-~P~g~~-~y~~~~~~~~~~g~k 184 (231)
++.+||+||.. ......|.|.||||+++.|||+.+||.||++||+|+++.+..+.. ...+.+ .+.+++..... ...
T Consensus 14 ~~~vLl~~R~~-~~~~~~g~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 91 (141)
T PRK15472 14 DGAYLLCKMAD-DRGVFPGQWALSGGGVEPGERIEEALRREIREELGEQLLLTEITPWTFRDDIRTKTYADGRKEE-IYM 91 (141)
T ss_pred CCEEEEEEecc-cCCCCCCceeCCcccCCCCCCHHHHHHHHHHHHHCCceeeeeeccccccccceeEEecCCCcee-EEE
Confidence 45799999762 112356899999999999999999999999999999875432211 000000 11122211000 011
Q ss_pred E-EEEEEEEeCCcccccCcccceeeecHHhhcccC--cchHHHHHh
Q 026891 185 Q-FFFKSQVIASNKFTIGKCEDFVWVTKDELMEYF--PESAEFLNK 227 (231)
Q Consensus 185 v-fff~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~--p~~~~~v~~ 227 (231)
+ ++|.|...++.+.+.+++.+++|++.+||.++. |++..++..
T Consensus 92 ~~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~l~~~~~~~~~~~~ 137 (141)
T PRK15472 92 IYLIFDCVSANRDVKINEEFQDYAWVKPEDLVHYDLNVATRKTLRL 137 (141)
T ss_pred EEEEEEeecCCCcccCChhhheEEEccHHHhccccccHHHHHHHHH
Confidence 2 346676666666666689999999999999987 566666543
No 6
>PRK10546 pyrimidine (deoxy)nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.70 E-value=3.6e-16 Score=122.85 Aligned_cols=111 Identities=14% Similarity=0.196 Sum_probs=83.9
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
+..+||+||+..| ...|.|.||||+++.|||+.+||.||+.||+|+++.+. ..++.+.|.++.. ...++
T Consensus 14 ~~~vLL~~R~~~~--~~~g~w~~PgG~ve~gE~~~~a~~RE~~EE~Gl~~~~~----~~~~~~~~~~~~~-----~~~~~ 82 (135)
T PRK10546 14 DGKILLAQRPAHS--DQAGLWEFAGGKVEPGESQPQALIRELREELGIEATVG----EYVASHQREVSGR-----RIHLH 82 (135)
T ss_pred CCEEEEEEccCCC--CCCCcEECCcccCCCCCCHHHHHHHHHHHHHCCccccc----eeEEEEEEecCCc-----EEEEE
Confidence 4579999986322 34689999999999999999999999999999987642 2244555554432 25677
Q ss_pred EEEEEEeCCcccccCcccceeeecHHhhcccC--cchHHHHHhhh
Q 026891 187 FFKSQVIASNKFTIGKCEDFVWVTKDELMEYF--PESAEFLNKMI 229 (231)
Q Consensus 187 ff~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~--p~~~~~v~~~l 229 (231)
+|.+....|.+.. .++.++.|++.+|+.++. +.+..+++.++
T Consensus 83 ~~~~~~~~~~~~~-~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 126 (135)
T PRK10546 83 AWHVPDFHGELQA-HEHQALVWCTPEEALRYPLAPADIPLLEAFM 126 (135)
T ss_pred EEEEEEecCcccc-cccceeEEcCHHHcccCCCCcCcHHHHHHHH
Confidence 8888877676543 367899999999999886 67777777664
No 7
>PRK09438 nudB dihydroneopterin triphosphate pyrophosphatase; Provisional
Probab=99.68 E-value=1.9e-16 Score=126.98 Aligned_cols=115 Identities=12% Similarity=0.111 Sum_probs=79.0
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeE--E-EecccceEEE------EecCCCCC
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHT--Y-FVGNAPMGHM------VMQPAEKM 177 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v--~-~vg~~P~g~~------~y~~~~~~ 177 (231)
++.+||++|.. ..+.|.||+|+++.|||+.+||.|||+||||+++.+ . +++......+ .+.++.
T Consensus 18 ~~~vLl~~r~~-----~~~~W~lPgG~ve~gEs~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-- 90 (148)
T PRK09438 18 DLGVLMLQRAD-----DPDFWQSVTGSLEEGETPAQTAIREVKEETGIDVLAEQLTLIDCQRSIEYEIFPHWRHRYAP-- 90 (148)
T ss_pred CCeEEEEEecC-----CCCcEeCCcccCCCCCCHHHHHHHHHHHHhCcCccccceeecccccccccccchhhhhcccc--
Confidence 34589998752 357899999999999999999999999999998732 1 1110000001 111111
Q ss_pred CCCCceEEEEEEEEEeCCcccccCcccceeeecHHhhcccC--cchHHHHHhhh
Q 026891 178 PDVPSYKQFFFKSQVIASNKFTIGKCEDFVWVTKDELMEYF--PESAEFLNKMI 229 (231)
Q Consensus 178 ~~~~g~kvfff~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~--p~~~~~v~~~l 229 (231)
+..+...++|.|...++.....+++.++.|++.+|+.++. |.+...++.++
T Consensus 91 -~~~~~~~~~f~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~l~~~~ 143 (148)
T PRK09438 91 -GVTRNTEHWFCLALPHERPVVLTEHLAYQWLDAREAAALTKSWSNAEAIEQLV 143 (148)
T ss_pred -ccCCceeEEEEEecCCCCccccCcccceeeCCHHHHHHHhcChhHHHHHHHHH
Confidence 1224577888898765532223489999999999999987 77778877665
No 8
>cd04679 Nudix_Hydrolase_20 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.68 E-value=6.1e-16 Score=120.25 Aligned_cols=104 Identities=11% Similarity=0.082 Sum_probs=77.1
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
..+||++|.. .+..|.|.||||+++.|||+.+||.||++||+|+++... .+++...+.+... ......++
T Consensus 14 ~~vLL~~r~~---~~~~~~w~lPgG~ve~gEt~~eaa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~---~~~~~~~~ 83 (125)
T cd04679 14 GKLLLVKRLR---APEAGHWGIPGGKVDWMEAVEDAVVREIEEETGLSIHST----RLLCVVDHIIEEP---PQHWVAPV 83 (125)
T ss_pred CEEEEEEecC---CCCCCeEeCCeeeccCCCCHHHHHHHHHHHHHCCCcccc----eEEEEEeecccCC---CCeEEEEE
Confidence 5699998863 234689999999999999999999999999999987653 2344443322221 12356778
Q ss_pred EEEEEeCCcccc--cCcccceeeecHHhhcccC-cch
Q 026891 188 FKSQVIASNKFT--IGKCEDFVWVTKDELMEYF-PES 221 (231)
Q Consensus 188 f~a~~~~G~~~~--~~e~~d~~Wvt~eEl~~~~-p~~ 221 (231)
|.|...++.+.. .+++.+++|++.+|+.+.+ +..
T Consensus 84 f~~~~~~~~~~~~~~~E~~~~~W~~~~~l~~~l~~~~ 120 (125)
T cd04679 84 YLAENFSGEPRLMEPDKLLELGWFALDALPQPLTRAT 120 (125)
T ss_pred EEEeecCCccccCCCccccEEEEeCHHHCCchhHHHH
Confidence 899888776542 2478999999999999877 543
No 9
>cd04680 Nudix_Hydrolase_21 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=6e-16 Score=118.78 Aligned_cols=104 Identities=15% Similarity=0.129 Sum_probs=77.8
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCee-EEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSH-TYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~-v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
+.+||+++. ..+.|.||||+++.|||+.+||.||++||+|+.+. .. ..++.+.+..... ...++
T Consensus 12 ~~vLL~~r~------~~~~w~~PgG~ve~gEt~~~aa~REl~EEtG~~~~~~~----~~~~~~~~~~~~~-----~~~~~ 76 (120)
T cd04680 12 GRVLLVRHT------YGPGWYLPGGGLERGETFAEAARRELLEELGIRLAVVA----ELLGVYYHSASGS-----WDHVI 76 (120)
T ss_pred CeEEEEEEC------CCCcEeCCCCcCCCCCCHHHHHHHHHHHHHCCcccccc----ceEEEEecCCCCC-----ceEEE
Confidence 568899875 23489999999999999999999999999999876 32 3345554433221 25788
Q ss_pred EEEEEEeCCcc-cccCcccceeeecHHhhcccC-cchHHHHH
Q 026891 187 FFKSQVIASNK-FTIGKCEDFVWVTKDELMEYF-PESAEFLN 226 (231)
Q Consensus 187 ff~a~~~~G~~-~~~~e~~d~~Wvt~eEl~~~~-p~~~~~v~ 226 (231)
+|.|....+.. ...+++.++.|++.+||.+.+ +.....+.
T Consensus 77 ~f~~~~~~~~~~~~~~E~~~~~w~~~~~l~~~~~~~~~~~~~ 118 (120)
T cd04680 77 VFRARADTQPVIRPSHEISEARFFPPDALPEPTTPATRRRIA 118 (120)
T ss_pred EEEecccCCCccCCcccEEEEEEECHHHCcccCChHHHHHhh
Confidence 99999887653 333588899999999999987 65444443
No 10
>cd04669 Nudix_Hydrolase_11 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.67 E-value=7.8e-16 Score=119.68 Aligned_cols=94 Identities=19% Similarity=0.121 Sum_probs=72.4
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
..+||++|.. +..+.|+||||+++.|||+.+||.||++||+|+++++.. .++.+.+ + +...+|
T Consensus 12 ~~vLL~~r~~----~~~~~w~lPGG~ve~gEs~~~a~~REl~EEtGl~~~~~~----~~~~~~~--~-------~~~~~~ 74 (121)
T cd04669 12 GEILLIRRIK----PGKTYYVFPGGGIEEGETPEEAAKREALEELGLDVRVEE----IFLIVNQ--N-------GRTEHY 74 (121)
T ss_pred CEEEEEEEec----CCCCcEECCceeccCCCCHHHHHHHHHHHhhCeeEeeee----EEEEEee--C-------CcEEEE
Confidence 6799999862 235789999999999999999999999999999886532 2344433 1 245789
Q ss_pred EEEEEeCCccccc----------CcccceeeecHHhhcccC
Q 026891 188 FKSQVIASNKFTI----------GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 188 f~a~~~~G~~~~~----------~e~~d~~Wvt~eEl~~~~ 218 (231)
|.|+..+|.+... .++.++.|++.+||..+.
T Consensus 75 f~~~~~~g~~~~~~~~e~~~~~~~~~~~~~Wv~~~el~~l~ 115 (121)
T cd04669 75 FLARVISGKLGLGVGEEFERQSDDNQYHPVWVDLDQLETIP 115 (121)
T ss_pred EEEEEECCeecCCCchhhcccCCCCceEEEEEEHHHcccCC
Confidence 9999998876432 124578999999999866
No 11
>cd03428 Ap4A_hydrolase_human_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Ap4A hydrolases are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one subfamily and fungi/animals/archaea enzymes, represented by this subfamily, fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val) that functions as a metal binding and
Probab=99.67 E-value=6.1e-16 Score=120.65 Aligned_cols=110 Identities=15% Similarity=0.196 Sum_probs=79.0
Q ss_pred CCcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEE
Q 026891 106 DRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQ 185 (231)
Q Consensus 106 ~~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kv 185 (231)
++.+|||+++. . +.|.||||+++.|||+.+||.||++||+|+.+.... ..+.....+.++.. ..+..+
T Consensus 15 ~~~~vLl~~~~------~-~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~~~~~~~~~~~~~~---~~~~~~ 82 (130)
T cd03428 15 NEIEYLLLQAS------Y-GHWDFPKGHVEPGEDDLEAALRETEEETGITAEQLF--IVLGFKETLNYQVR---GKLKTV 82 (130)
T ss_pred CCceEEEEEcc------C-CcCcCCcCCCCCCCCHHHHHHHHHHHHHCCChhhhh--hhccceeEEEcccc---CcceEE
Confidence 45579999975 2 889999999999999999999999999999877532 11111112222211 124678
Q ss_pred EEEEEEEeCC-cccccCcccceeeecHHhhcccC--cchHHHHHh
Q 026891 186 FFFKSQVIAS-NKFTIGKCEDFVWVTKDELMEYF--PESAEFLNK 227 (231)
Q Consensus 186 fff~a~~~~G-~~~~~~e~~d~~Wvt~eEl~~~~--p~~~~~v~~ 227 (231)
++|.|.+..+ .+...+++.++.|++.+|+.+++ +....++++
T Consensus 83 ~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~ 127 (130)
T cd03428 83 TYFLAELRPDVEVKLSEEHQDYRWLPYEEALKLLTYEDLKAVLDK 127 (130)
T ss_pred EEEEEEeCCCCccccccceeeEEeecHHHHHHHcCchhHHHHHHH
Confidence 9999998743 44444588999999999999998 455555554
No 12
>cd03427 MTH1 MutT homolog-1 (MTH1) is a member of the Nudix hydrolase superfamily. MTH1, the mammalian counterpart of MutT, hydrolyzes oxidized purine nucleoside triphosphates, such as 8-oxo-dGTP and 2-hydroxy-ATP, to monophosphates, thereby preventing the incorporation of such oxygen radicals during replication. This is an important step in the repair mechanism in genomic and mitochondrial DNA. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity, and contain the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. MTH1 is predominantly localized in the cytoplasm and mitochondria. Structurally, this enzyme adopts a similar fold to MutT despite low sequence similarity outside the conserved nudix motif. The most distinctive structural difference between MutT and MTH1 is the presence of a beta-hairpin, which is absent in MutT. This results in a m
Probab=99.67 E-value=7.7e-16 Score=121.25 Aligned_cols=113 Identities=19% Similarity=0.225 Sum_probs=84.1
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
++.+||++|.. ....+.|.||||+++.|||+.+||.||+.||+|+++.... .++.+.+..+.. .....++
T Consensus 11 ~~~vLL~~r~~---~~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~----~~~~~~~~~~~~---~~~~~~~ 80 (137)
T cd03427 11 PDKVLLLNRKK---GPGWGGWNGPGGKVEPGETPEECAIRELKEETGLTIDNLK----LVGIIKFPFPGE---EERYGVF 80 (137)
T ss_pred CCEEEEEEecC---CCCCCeEeCCceeCCCCCCHHHHHHHHHHHhhCeEeecce----EEEEEEEEcCCC---CcEEEEE
Confidence 35689998863 1246889999999999999999999999999999776532 235555544331 1246788
Q ss_pred EEEEEEeCCcccccCcccceeeecHHhhcccC--cchHHHHHhhh
Q 026891 187 FFKSQVIASNKFTIGKCEDFVWVTKDELMEYF--PESAEFLNKMI 229 (231)
Q Consensus 187 ff~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~--p~~~~~v~~~l 229 (231)
+|.|....+.+...++..++.|++.+|+.... +.+...++.++
T Consensus 81 ~f~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~l~~~~ 125 (137)
T cd03427 81 VFLATEFEGEPLKESEEGILDWFDIDDLPLLPMWPGDREWLPLML 125 (137)
T ss_pred EEEECCcccccCCCCccccceEEcHhhcccccCCCCcHHHHHHHh
Confidence 99998887776534566799999999998765 56666666554
No 13
>cd04696 Nudix_Hydrolase_37 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1.3e-15 Score=118.57 Aligned_cols=102 Identities=15% Similarity=0.156 Sum_probs=72.0
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
..+||+|+.. .+|.|.||||+++.|||+.+||.||++||+|+++...- . .+...|.+.....+.....++.
T Consensus 14 ~~iLL~r~~~-----~~~~w~lPGG~ve~gEs~~~aa~REl~EEtGl~~~~~~--~--~~~~~~~~~~~~~~~~~~~~~~ 84 (125)
T cd04696 14 GRILLVRTTK-----WRGLWGVPGGKVEWGETLEEALKREFREETGLKLRDIK--F--AMVQEAIFSEEFHKPAHFVLFD 84 (125)
T ss_pred CCEEEEEccC-----CCCcEeCCceeccCCCCHHHHHHHHHHHHhCCcccccc--e--EEEEEEeccCCCCCccEEEEEE
Confidence 3588898652 35899999999999999999999999999999876421 1 2222222211111112344666
Q ss_pred EEEEEeCCcccccCcccceeeecHHhhcccC
Q 026891 188 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 188 f~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~ 218 (231)
|.|...++.....+++.++.|++.+|+.++.
T Consensus 85 ~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~ 115 (125)
T cd04696 85 FFARTDGTEVTPNEEIVEWEWVTPEEALDYP 115 (125)
T ss_pred EEEEecCCcccCCcccceeEEECHHHHhcCC
Confidence 7888766555555689999999999998876
No 14
>cd04673 Nudix_Hydrolase_15 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.66 E-value=1.2e-15 Score=117.31 Aligned_cols=105 Identities=18% Similarity=0.173 Sum_probs=76.5
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCC-CCCCceEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKM-PDVPSYKQ 185 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~-~~~~g~kv 185 (231)
++.+||+++.. ....+.|.||||+++.|||+++||.||++||+|+++... ..++.+.+.++... .......+
T Consensus 10 ~~~vLl~~r~~---~~~~~~w~~PgG~ie~gE~~~~aa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 82 (122)
T cd04673 10 GGRVLLVRRAN---PPDAGLWSFPGGKVELGETLEQAALRELLEETGLEAEVG----RLLTVVDVIERDAAGRVEFHYVL 82 (122)
T ss_pred CCEEEEEEEcC---CCCCCeEECCCcccCCCCCHHHHHHHHHHHhhCcEeeec----eeEEEEEEeeccCCCccceEEEE
Confidence 35689998762 234678999999999999999999999999999987642 22344443332211 01224566
Q ss_pred EEEEEEEeCCcccccCcccceeeecHHhhcccC
Q 026891 186 FFFKSQVIASNKFTIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 186 fff~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~ 218 (231)
++|.|....+.....+++.+++|++.+|+.+..
T Consensus 83 ~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~ 115 (122)
T cd04673 83 IDFLCRYLGGEPVAGDDALDARWVPLDELAALS 115 (122)
T ss_pred EEEEEEeCCCcccCCcccceeEEECHHHHhhCc
Confidence 778888877776444588999999999998876
No 15
>cd04684 Nudix_Hydrolase_25 Contains a crystal structure of the Nudix hydrolase from Enterococcus faecalis, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability
Probab=99.66 E-value=1.4e-15 Score=117.63 Aligned_cols=105 Identities=14% Similarity=0.113 Sum_probs=75.7
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCC-CCceEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPD-VPSYKQ 185 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~-~~g~kv 185 (231)
+..+||+++.. .+.++.|.||||+++.|||+.+||.||++||+|+++... ..++.+.+.++..... ......
T Consensus 10 ~~~vLl~~~~~---~~~~~~w~lPgG~ve~gE~~~~aa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~~~~~~~~~~~ 82 (128)
T cd04684 10 DGKLLLIQKNG---GPYEGRWDLPGGGIEPGESPEEALHREVLEETGLTVEIG----RRLGSASRYFYSPDGDYDAHHLC 82 (128)
T ss_pred CCEEEEEEccC---CCCCCeEECCCcccCCCCCHHHHHHHHHHHHhCcEeecc----eeeeEEEEEEECCCCCeeccEEE
Confidence 35799999863 124689999999999999999999999999999987652 2234433322211100 124577
Q ss_pred EEEEEEEeCCcc---cccCcccceeeecHHhhcccC
Q 026891 186 FFFKSQVIASNK---FTIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 186 fff~a~~~~G~~---~~~~e~~d~~Wvt~eEl~~~~ 218 (231)
++|.|....+.. ...+++.++.|++.+|+....
T Consensus 83 ~~f~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 118 (128)
T cd04684 83 VFYDARVVGGALPVQEPGEDSHGAAWLPLDEAIERL 118 (128)
T ss_pred EEEEEEEecCccccCCCCCCceeeEEECHHHhhccC
Confidence 889999887663 223477899999999999766
No 16
>cd03675 Nudix_Hydrolase_2 Contains a crystal structure of the Nudix hydrolase from Nitrosomonas europaea, which has an unknown function. In general, members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability,
Probab=99.66 E-value=1.6e-15 Score=119.09 Aligned_cols=113 Identities=17% Similarity=0.203 Sum_probs=81.8
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
++.+||+++.. ..++.|.||||+++.|||+.+||.||++||+|+++.... .++.+.+..+.. ......+
T Consensus 10 ~~~vLlv~r~~----~~~~~w~~PgG~ve~gEs~~~aa~REl~EEtGl~~~~~~----~~~~~~~~~~~~---~~~~~~~ 78 (134)
T cd03675 10 DGRFLLVEEET----DGGLVFNQPAGHLEPGESLIEAAVRETLEETGWHVEPTA----LLGIYQWTAPDS---DTTYLRF 78 (134)
T ss_pred CCEEEEEEEcc----CCCceEECCCccCCCCCCHHHHHHHHHHHHHCcccccce----EEEEEEeecCCC---CeeEEEE
Confidence 45699999863 246789999999999999999999999999999876532 344455444331 1123456
Q ss_pred EEEEEEeCCccc--ccCcccceeeecHHhhcccC-----cchHHHHHhhhc
Q 026891 187 FFKSQVIASNKF--TIGKCEDFVWVTKDELMEYF-----PESAEFLNKMII 230 (231)
Q Consensus 187 ff~a~~~~G~~~--~~~e~~d~~Wvt~eEl~~~~-----p~~~~~v~~~l~ 230 (231)
+|.|.+.++... ..+++.++.|++.+|+.... |.....++.+|.
T Consensus 79 ~f~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~~~i~~~l~ 129 (134)
T cd03675 79 AFAAELLEHLPDQPLDSGIVRAHWLTLEEILALAARLRSPLVLRCIEDYLA 129 (134)
T ss_pred EEEEEECCCCCCCCCCCCceeeEEEeHHHHHhhhhhhcCchHHHHHHHHHh
Confidence 788888765442 22478899999999999875 345677777664
No 17
>cd03430 GDPMH GDP-mannose glycosyl hydrolase (AKA GDP-mannose mannosyl hydrolase (GDPMH)) is a member of the Nudix hydrolase superfamily. This class of enzymes is unique from other members of the superfamily in two aspects. First, it contains a modified Nudix signature sequence. The slight changes to the conserved sequence motif, GX5EX7REUXEEXGU, where U = I, L or V), are believed to contribute to the removal of all magnesium binding sites but one, retaining only the metal site that coordinates the pyrophosphate of the substrate. Secondly, it is not a pyrophosphatase that substitutes at a phosphorus; instead, it hydrolyzes nucleotide sugars such as GDP-mannose to GDP and mannose, cleaving the phosphoglycosyl bond by substituting at a carbon position. GDP-mannose provides mannosyl components for cell wall synthesis and is required for the synthesis of other glycosyl donors (such as GDP-fucose and colitose) for the cell wall. The importance of GDP-sugar hydrolase activities is thus close
Probab=99.66 E-value=1.6e-15 Score=121.71 Aligned_cols=106 Identities=15% Similarity=0.147 Sum_probs=75.8
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCC--CC-CCCceE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEK--MP-DVPSYK 184 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~--~~-~~~g~k 184 (231)
+.+||+||.. .+..|.|.||||+++.|||+.+||.||++||+|+++.+..+ ..++++.+.+... .. ...+..
T Consensus 24 g~vLl~~R~~---~p~~g~w~lPGG~ve~gEs~~~aa~RE~~EE~Gl~v~~~~~--~~l~~~~~~~~~~~~~~~~~~~~~ 98 (144)
T cd03430 24 GQYLLGKRTN---RPAQGYWFVPGGRIRKNETLTEAFERIAKDELGLEFLISDA--ELLGVFEHFYDDNFFGDDFSTHYV 98 (144)
T ss_pred CeEEEEEccC---CCCCCcEECCCceecCCCCHHHHHHHHHHHHHCCCcccccc--eEEEEEEEEeccccccCCCccEEE
Confidence 6899999863 23578999999999999999999999999999998764311 1233333222111 01 123466
Q ss_pred EEEEEEEEeCCcccc-cCcccceeeecHHhhcccC
Q 026891 185 QFFFKSQVIASNKFT-IGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 185 vfff~a~~~~G~~~~-~~e~~d~~Wvt~eEl~~~~ 218 (231)
.++|.|....|.... ..++.+++|++.+||....
T Consensus 99 ~~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~ 133 (144)
T cd03430 99 VLGYVLKLSSNELLLPDEQHSEYQWLTSDELLADD 133 (144)
T ss_pred EEEEEEEEcCCcccCCchhccEeEEecHHHHhcCC
Confidence 788999888776433 2489999999999998653
No 18
>cd03671 Ap4A_hydrolase_plant_like Diadenosine tetraphosphate (Ap4A) hydrolase is a member of the Nudix hydrolase superfamily. Members of this family are well represented in a variety of prokaryotic and eukaryotic organisms. Phylogenetic analysis reveals two distinct subgroups where plant enzymes fall into one group (represented by this subfamily) and fungi/animals/archaea enzymes fall into another. Bacterial enzymes are found in both subfamilies. Ap4A is a potential by-product of aminoacyl tRNA synthesis, and accumulation of Ap4A has been implicated in a range of biological events, such as DNA replication, cellular differentiation, heat shock, metabolic stress, and apoptosis. Ap4A hydrolase cleaves Ap4A asymmetrically into ATP and AMP. It is important in the invasive properties of bacteria and thus presents a potential target for the inhibition of such invasive bacteria. Besides the signature nudix motif (G[X5]E[X7]REUXEEXGU where U is Ile, Leu, or Val), Ap4A hydrolase is structurally
Probab=99.64 E-value=2.1e-15 Score=121.01 Aligned_cols=115 Identities=14% Similarity=0.184 Sum_probs=80.4
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeE-EEecccceEEEEecCCCCCCC------C
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHT-YFVGNAPMGHMVMQPAEKMPD------V 180 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v-~~vg~~P~g~~~y~~~~~~~~------~ 180 (231)
..+||++|.. ..+.|.||+|++++||++.+||.||++||||+++.. ..++..+ +.+.|..+..... .
T Consensus 15 ~~vLL~~r~~-----~~~~W~~PgG~~e~gE~~~~aA~REv~EEtGl~~~~~~~l~~~~-~~~~y~~~~~~~~~~~~~~~ 88 (147)
T cd03671 15 GKVFVGRRID-----TPGAWQFPQGGIDEGEDPEQAALRELEEETGLDPDSVEIIAEIP-DWLRYDLPPELKLKIWGGRY 88 (147)
T ss_pred CEEEEEEEcC-----CCCCEECCcCCCCCCcCHHHHHHHHHHHHHCCCcCceEEEEEcC-CeeEeeChhhhhccccCCcC
Confidence 5799999862 227999999999999999999999999999998643 2333322 2344544322100 1
Q ss_pred CceEEEEEEEEEeC--Cccccc----CcccceeeecHHhhcccC-cchHHHHHhh
Q 026891 181 PSYKQFFFKSQVIA--SNKFTI----GKCEDFVWVTKDELMEYF-PESAEFLNKM 228 (231)
Q Consensus 181 ~g~kvfff~a~~~~--G~~~~~----~e~~d~~Wvt~eEl~~~~-p~~~~~v~~~ 228 (231)
.+..+++|.+.+.. +.+.+. +++.++.|++.+|+.+.. +--..++.+.
T Consensus 89 ~~~~~~~~l~~~~~~~~~~~l~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~~ 143 (147)
T cd03671 89 RGQEQKWFLFRFTGDDSEIDLNAPEHPEFDEWRWVPLEELPDLIVPFKRPVYEAV 143 (147)
T ss_pred CCEEEEEEEEEecCCCccccCCCCCCCCEeeEEeCCHHHHHHhchhhhHHHHHHH
Confidence 24577888888875 444332 389999999999999988 5444555443
No 19
>cd04695 Nudix_Hydrolase_36 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=2.4e-15 Score=118.28 Aligned_cols=113 Identities=12% Similarity=0.128 Sum_probs=78.8
Q ss_pred CCcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEE
Q 026891 106 DRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQ 185 (231)
Q Consensus 106 ~~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kv 185 (231)
.+..+||++|.. ...|.|.||||++++|||+.+||.||++||+|+++.....+ ..+. +.|..+.. ....+
T Consensus 12 ~~~~vLl~~r~~----~~~g~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~~~-~~~~-~~~~~~~~----~~~~~ 81 (131)
T cd04695 12 KETKVLLLKRVK----TLGGFWCHVAGGVEAGETAWQAALRELKEETGISLPELYNA-DYLE-QFYEANDN----RILMA 81 (131)
T ss_pred CCCEEEEEEecC----CCCCcEECCcccccCCCCHHHHHHHHHHHHhCCCccccccc-ccee-eEeecCCc----eEEEE
Confidence 345689999862 24689999999999999999999999999999987532111 1111 12222211 12455
Q ss_pred EEEEEEEeCCcc-cccCcccceeeecHHhhcccC--cchHHHHHhh
Q 026891 186 FFFKSQVIASNK-FTIGKCEDFVWVTKDELMEYF--PESAEFLNKM 228 (231)
Q Consensus 186 fff~a~~~~G~~-~~~~e~~d~~Wvt~eEl~~~~--p~~~~~v~~~ 228 (231)
++|.+....+.. ...+++.++.|++.+|+.+.+ |.++.+++.+
T Consensus 82 ~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~~~~~~~~~~~~~ 127 (131)
T cd04695 82 PVFVGFVPPHQEVVLNHEHTEYRWCSFAEALELAPFPGQRALYDHV 127 (131)
T ss_pred EEEEEEecCCCccccCchhcccEecCHHHHHHhcCChhHHHHHHHH
Confidence 677777655433 334589999999999999888 6777776654
No 20
>PLN02325 nudix hydrolase
Probab=99.64 E-value=2.3e-15 Score=120.93 Aligned_cols=114 Identities=16% Similarity=0.175 Sum_probs=78.9
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
++.+||++|.. ....|.|.||||+++.|||+.+||.||++||+|+++.+. ..++++.+.+.... ...+...+
T Consensus 19 ~~~vLL~rr~~---~~~~g~W~lPGG~ve~gEs~~~aa~REv~EEtGl~v~~~----~~l~~~~~~~~~~~-~~~~~i~~ 90 (144)
T PLN02325 19 GNSVLLGRRRS---SIGDSTFALPGGHLEFGESFEECAAREVKEETGLEIEKI----ELLTVTNNVFLEEP-KPSHYVTV 90 (144)
T ss_pred CCEEEEEEecC---CCCCCeEECCceeCCCCCCHHHHHHHHHHHHHCCCCcce----EEEEEecceeecCC-CCcEEEEE
Confidence 35789998863 234689999999999999999999999999999987653 23444332221110 12346778
Q ss_pred EEEEEEeCCcccc----cCcccceeeecHHhhcccC-cchHHHHHhh
Q 026891 187 FFKSQVIASNKFT----IGKCEDFVWVTKDELMEYF-PESAEFLNKM 228 (231)
Q Consensus 187 ff~a~~~~G~~~~----~~e~~d~~Wvt~eEl~~~~-p~~~~~v~~~ 228 (231)
||.|...++.... .+++.+++|++.++|...+ ......+..+
T Consensus 91 ~f~~~~~~~~~~~~~~e~~e~~~~~W~~~d~Lp~~~~~p~~~~~~~~ 137 (144)
T PLN02325 91 FMRAVLADPSQVPQNLEPEKCYGWDWYEWDNLPEPLFWPLEKLVGSG 137 (144)
T ss_pred EEEEEECCCCCCCCcCCchhcCceEEEChHHCChhhhHHHHHHHHcC
Confidence 8889887654321 1256889999999999877 4444455544
No 21
>cd04678 Nudix_Hydrolase_19 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=4.6e-15 Score=115.78 Aligned_cols=111 Identities=20% Similarity=0.203 Sum_probs=78.7
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
..+||++|.. ...++.|.||||+++.|||+.+||.||++||+|+++... . .++.+....++. ......+|
T Consensus 14 ~~iLl~~r~~---~~~~~~w~~PGG~ve~gEt~~~Aa~REl~EE~Gl~~~~~--~--~~~~~~~~~~~~---~~~~~~~~ 83 (129)
T cd04678 14 GKVLLGKRKG---SHGAGTWALPGGHLEFGESFEECAAREVLEETGLHIENV--Q--FLTVTNDVFEEE---GKHYVTIF 83 (129)
T ss_pred CeEEEEeccC---CCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCcccce--E--EEEEEeEEeCCC---CcEEEEEE
Confidence 4689998862 235789999999999999999999999999999987652 1 133333222211 22467788
Q ss_pred EEEEEeCCccccc----CcccceeeecHHhhcccCcchHHHHHhhh
Q 026891 188 FKSQVIASNKFTI----GKCEDFVWVTKDELMEYFPESAEFLNKMI 229 (231)
Q Consensus 188 f~a~~~~G~~~~~----~e~~d~~Wvt~eEl~~~~p~~~~~v~~~l 229 (231)
|.|....+..... +++.+++|++.+||.+. +....-+++||
T Consensus 84 ~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~-~~~~~~~~~~~ 128 (129)
T cd04678 84 VKAEVDDGEAEPNKMEPEKCEGWEWFDWEELPSV-DPLFLPLKNLF 128 (129)
T ss_pred EEEEeCCCCcccCCCCCceeCceEEeCHHHCCCc-chhhHHHHHHh
Confidence 8999887654331 36789999999999985 44444455443
No 22
>cd04683 Nudix_Hydrolase_24 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.64 E-value=2.5e-15 Score=115.77 Aligned_cols=104 Identities=16% Similarity=0.164 Sum_probs=74.5
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
++.+||++|.+.+ ...|.|.||||+++.|||+.+||.||+.||+|+.+....+ ..++.+.+.++.. .....+
T Consensus 10 ~~~vLL~~r~~~~--~~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~v~~~~~--~~~~~~~~~~~~~----~~~~~~ 81 (120)
T cd04683 10 DDEVLLQRRANTG--YMDGQWALPAGHLEKGEDAVTAAVREAREEIGVTLDPEDL--RLAHTMHRRTEDI----ESRIGL 81 (120)
T ss_pred CCEEEEEEccCCC--CCCCeEeCCccccCCCCCHHHHHHHHHHHHHCCccChhhe--EEEEEEEecCCCC----ceEEEE
Confidence 4679999986322 2468999999999999999999999999999998752111 1233333322221 135567
Q ss_pred EEEEEEeCCccccc--CcccceeeecHHhhcccC
Q 026891 187 FFKSQVIASNKFTI--GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 187 ff~a~~~~G~~~~~--~e~~d~~Wvt~eEl~~~~ 218 (231)
||.|....|.+... +++.++.|++.+||...+
T Consensus 82 ~f~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 115 (120)
T cd04683 82 FFTVRRWSGEPRNCEPDKCAELRWFPLDALPDDT 115 (120)
T ss_pred EEEEEeecCccccCCCCcEeeEEEEchHHCcchh
Confidence 88898877765432 478899999999998766
No 23
>cd04687 Nudix_Hydrolase_28 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=3.4e-15 Score=116.65 Aligned_cols=104 Identities=13% Similarity=0.081 Sum_probs=73.6
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCC---CCCCCCce
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAE---KMPDVPSY 183 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~---~~~~~~g~ 183 (231)
++.+||+++.. +.++.|.||||+++.|||+++||.||+.||+|+.+...- ..+++.|.+.. ......+.
T Consensus 11 ~~~vLl~~r~~----~~~~~~~lPGG~ve~gEt~~~aa~RE~~EEtGl~v~~~~----~~~~~~~~~~~~~~~~~~~~~~ 82 (128)
T cd04687 11 NDKILLIKHHD----DGGVWYILPGGGQEPGETLEDAAHRECKEEIGIDVEIGP----LLFVREYIGHNPTSELPGHFHQ 82 (128)
T ss_pred CCEEEEEEEEc----CCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCccccCc----EEEEEEEeccCccccCCCceeE
Confidence 46899998862 235789999999999999999999999999999876421 12222332111 00012356
Q ss_pred EEEEEEEEEeCCccc-----ccCcccceeeecHHhhcccC
Q 026891 184 KQFFFKSQVIASNKF-----TIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 184 kvfff~a~~~~G~~~-----~~~e~~d~~Wvt~eEl~~~~ 218 (231)
..+||.|+...+... ...+..++.|++.++|.++.
T Consensus 83 i~~~f~~~~~~~~~~~~~~~~~~~~~~~~W~~~~~l~~~~ 122 (128)
T cd04687 83 VELMFECKIKSGTPAKTPSKPDPNQIGVEWLKLKELGDIP 122 (128)
T ss_pred EEEEEEEEECCCCcccccCCCCCCEEeeEEEcHHHhCccc
Confidence 778999999877531 12245699999999998876
No 24
>TIGR00586 mutt mutator mutT protein. All proteins in this family for which functions are known are involved in repairing oxidative damage to dGTP (they are 8-oxo-dGTPases). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.63 E-value=7e-15 Score=114.03 Aligned_cols=110 Identities=13% Similarity=0.015 Sum_probs=83.2
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
+.+||.+|+..| ..+|.|+||+|+++.|||+.+||.||+.||+|+++.+. .+++.+.+.++.. ...+++
T Consensus 16 ~~vLl~~R~~~~--~~~g~w~~Pgg~ve~ge~~~~~~~RE~~EE~g~~~~~~----~~~~~~~h~~~~~-----~~~~~~ 84 (128)
T TIGR00586 16 GEIIITRRADGH--MFAKLLEFPGGKEEGGETPEQAVVRELEEEIGIPQHFS----EFEKLEYEFYPRH-----ITLWFW 84 (128)
T ss_pred CEEEEEEEeCCC--CCCCeEECCCcccCCCCCHHHHHHHHHHHHHCCcceee----eEEEEEEEECCCc-----EEEEEE
Confidence 479999987422 35789999999999999999999999999999987642 2244555555432 368899
Q ss_pred EEEEEeCCcccccCcccceeeecHHhhcccC-c-chHHHHHhhh
Q 026891 188 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF-P-ESAEFLNKMI 229 (231)
Q Consensus 188 f~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~-p-~~~~~v~~~l 229 (231)
|.|...++.... .+..++.|++.+++.++. | .+..+++.+.
T Consensus 85 ~~~~~~~~~~~~-~~~~~~~W~~~~~l~~~~~p~~~~~~~~~~~ 127 (128)
T TIGR00586 85 LLERWEGGPPGK-EGQPEEWWVLVGLLADDFFPAANPVIIKLLR 127 (128)
T ss_pred EEEEEcCCCcCc-ccccccEEeCHHHCCccCCCCCCHHHHHHHh
Confidence 999887665432 356789999999999988 5 5667776554
No 25
>cd04681 Nudix_Hydrolase_22 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.63 E-value=3e-15 Score=116.88 Aligned_cols=114 Identities=13% Similarity=0.119 Sum_probs=75.6
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
+.+||++|... +..|.|.||||+++.|||+.+||.||++||+|+++.... .++.+.+.++... .......+|
T Consensus 13 ~~vLL~~r~~~---~~~~~w~~PgG~ve~gEs~~~aa~RE~~EEtGl~~~~~~----~~~~~~~~~~~~~-~~~~~~~~~ 84 (130)
T cd04681 13 GELLVVRRARE---PGKGTLDLPGGFVDPGESAEEALIREIREETGLKVTELS----YLFSLPNTYPYGG-MEYDTLDLF 84 (130)
T ss_pred CcEEEEEecCC---CCCCcEeCCceeecCCCCHHHHHHHHHHHHhCCccccee----EEEeecceeeeCC-ceeEEEEEE
Confidence 46888887531 246899999999999999999999999999999876421 1222211111110 011233457
Q ss_pred EEEEEeCCccccc-CcccceeeecHHhhc-c-cC-cchHHHHHhhh
Q 026891 188 FKSQVIASNKFTI-GKCEDFVWVTKDELM-E-YF-PESAEFLNKMI 229 (231)
Q Consensus 188 f~a~~~~G~~~~~-~e~~d~~Wvt~eEl~-~-~~-p~~~~~v~~~l 229 (231)
|.|++.++..... +++.++.|++.+||. + +. |.....++++|
T Consensus 85 ~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~~~~~~~ 130 (130)
T cd04681 85 FVCQVDDKPIVKAPDDVAELKWVVPQDIELENFAFPSIRQAVERWL 130 (130)
T ss_pred EEEEeCCCCCcCChHHhheeEEecHHHCCcccCCcHHHHHHHHhhC
Confidence 8888775544332 478999999999995 3 33 56666666543
No 26
>cd04691 Nudix_Hydrolase_32 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.62 E-value=4.6e-15 Score=114.66 Aligned_cols=102 Identities=11% Similarity=0.083 Sum_probs=75.0
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
++.+||++|...+ ....|.|.||||+++.|||+++||.||++||+|+++... ..++.+.+... ....++
T Consensus 10 ~~~vLL~rR~~~~-~~~~g~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~----~~l~~~~~~~~------~~~~~~ 78 (117)
T cd04691 10 DDKVLLERRSLTK-NADPGKLNIPGGHIEAGESQEEALLREVQEELGVDPLSY----TYLCSLYHPTS------ELQLLH 78 (117)
T ss_pred CCEEEEEEeCCCC-CCCCCeEECcceeecCCCCHHHHHHHHHHHHHCCCcccc----eEEEEEeccCC------CeEEEE
Confidence 3679999986311 125789999999999999999999999999999985221 11222222111 136788
Q ss_pred EEEEEEeCCcccccCcccceeeecHHhhcccCcc
Q 026891 187 FFKSQVIASNKFTIGKCEDFVWVTKDELMEYFPE 220 (231)
Q Consensus 187 ff~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~p~ 220 (231)
||.|....|.+.. +++.+..|++.+|+....++
T Consensus 79 ~~~~~~~~~~~~~-~E~~~~~W~~~~~l~~~~~~ 111 (117)
T cd04691 79 YYVVTFWQGEIPA-QEAAEVHWMTANDIVLASEA 111 (117)
T ss_pred EEEEEEecCCCCc-ccccccEEcCHHHcchhhhh
Confidence 9999988887654 58899999999999865543
No 27
>PF11788 MRP-L46: 39S mitochondrial ribosomal protein L46 ; InterPro: IPR021757 This is the L46 subunit of the mammalian mitochondrial ribosome, conserved from plants and fungi.
Probab=99.62 E-value=6.1e-16 Score=119.43 Aligned_cols=46 Identities=26% Similarity=0.387 Sum_probs=39.8
Q ss_pred cceEEEEEEeecCccCCCCCHHHHHHHHHHHHHHHHHHccCCcccc
Q 026891 23 EKIVASVLFERLPVVIPKIDPVVYAFQEFSFRWRQQYRRRYPDEFL 68 (231)
Q Consensus 23 ~~i~~av~l~R~Pvv~~~~~~~E~~~~~~~~~~~~~~~~~~~~~~~ 68 (231)
|+|+|||||+|+|||+|+|||||++|++|+.++.+++..+++..++
T Consensus 1 w~I~aav~L~R~Pvit~~~t~~E~~y~~yq~~L~~rl~~~~s~~~~ 46 (111)
T PF11788_consen 1 WKIFAAVCLSRPPVITPEPTPFEKAYYEYQKELLRRLEWEFSLYFY 46 (111)
T ss_pred CceeEEEEEecCCccCCCCCHHHHHHHHHHHHHHHHHhccccHHHH
Confidence 8999999999999999999999999999987777777766554443
No 28
>cd04664 Nudix_Hydrolase_7 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.62 E-value=3.3e-15 Score=116.74 Aligned_cols=104 Identities=13% Similarity=0.112 Sum_probs=74.4
Q ss_pred CCcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEE-EecccceEE-EEecCCCCCCCCCce
Q 026891 106 DRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTY-FVGNAPMGH-MVMQPAEKMPDVPSY 183 (231)
Q Consensus 106 ~~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~-~vg~~P~g~-~~y~~~~~~~~~~g~ 183 (231)
++..+||++|.. +..|.|.||||+++.|||+.+||.||++||+|+.+... +++. .+. ..+.+... ....
T Consensus 13 ~~~~vLL~~r~~----~~~~~w~~PgG~ve~~Es~~~aa~RE~~EE~Gl~~~~~~~~~~--~~~~~~~~~~~~---~~~~ 83 (129)
T cd04664 13 GEGRVLLLRRSD----KYAGFWQSVTGGIEDGESPAEAARREVAEETGLDPERLTLLDR--GASIAFVEFTDN---GRVW 83 (129)
T ss_pred CCCEEEEEEeCC----CCCCcccccCcccCCCCCHHHHHHHHHHHHHCCChhheEEEee--cccccccccCCC---ceEE
Confidence 356799999862 24789999999999999999999999999999986422 2211 110 01122111 1245
Q ss_pred EEEEEEEEEeCCc-ccccCcccceeeecHHhhcccC
Q 026891 184 KQFFFKSQVIASN-KFTIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 184 kvfff~a~~~~G~-~~~~~e~~d~~Wvt~eEl~~~~ 218 (231)
.+++|.|.+..+. ....+++.++.|++.+|+.+.+
T Consensus 84 ~~~~f~~~~~~~~~~~~~~E~~~~~W~~~~e~~~~~ 119 (129)
T cd04664 84 TEHPFAFHLPSDAVVTLDWEHDAFEWVPPEEAAALL 119 (129)
T ss_pred EEeEEEEEcCCCCcccCCccccccEecCHHHHHHHH
Confidence 7788999887654 3333588999999999999887
No 29
>cd04672 Nudix_Hydrolase_14 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.61 E-value=6.9e-15 Score=114.25 Aligned_cols=103 Identities=10% Similarity=0.052 Sum_probs=74.4
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
+.+||++++ ..+.|.||||+++.|||+.+||.||++||+|+.+... ..++.+.+..............++
T Consensus 13 ~~vLL~~~~------~~~~w~~PGG~ve~gEs~~~aa~REl~EEtG~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 82 (123)
T cd04672 13 GKILLVREK------SDGLWSLPGGWADVGLSPAENVVKEVKEETGLDVKVR----KLAAVDDRNKHHPPPQPYQVYKLF 82 (123)
T ss_pred CEEEEEEEc------CCCcEeCCccccCCCCCHHHHHHHHHHHHhCCeeeEe----EEEEEeccccccCCCCceEEEEEE
Confidence 568999876 2688999999999999999999999999999977442 123333211101000112355688
Q ss_pred EEEEEeCCcccccCcccceeeecHHhhcccC-cc
Q 026891 188 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF-PE 220 (231)
Q Consensus 188 f~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~-p~ 220 (231)
|.|.+..+.+...++..+++|++.+||.+.. |.
T Consensus 83 f~~~~~~~~~~~~~E~~~~~W~~~~el~~l~~~~ 116 (123)
T cd04672 83 FLCEILGGEFKPNIETSEVGFFALDDLPPLSEKR 116 (123)
T ss_pred EEEEecCCcccCCCceeeeEEECHHHCcccccCC
Confidence 9999987766555688999999999998876 53
No 30
>cd04700 DR1025_like DR1025 from Deinococcus radiodurans, a member of the Nudix hydrolase superfamily, show nucleoside triphosphatase and dinucleoside polyphosphate pyrophosphatase activities. Like other enzymes belonging to this superfamily, it requires a divalent cation, in this case Mg2+, for its activity. It also contains a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. In general, substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is us
Probab=99.61 E-value=6.6e-15 Score=117.77 Aligned_cols=99 Identities=10% Similarity=0.117 Sum_probs=73.6
Q ss_pred EEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEEE
Q 026891 109 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFF 188 (231)
Q Consensus 109 l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff 188 (231)
.+||+++.. ....+.|+||+|++++|||+.+||.||++||+|+++... .+++.+.+.++.. .....++|
T Consensus 26 ~vLL~~r~~---~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~----~~~~~~~~~~~~~----~~~~~~~f 94 (142)
T cd04700 26 DVLLVQEKG---GPKKGLWHIPSGAVEDGEFPQDAAVREACEETGLRVRPV----KFLGTYLGRFDDG----VLVLRHVW 94 (142)
T ss_pred cEEEEEEcC---CCCCCeEECCceecCCCCCHHHHHHHHHHHhhCceeecc----EEEEEEEEEcCCC----cEEEEEEE
Confidence 478888652 135688999999999999999999999999999987653 2345454444332 12445788
Q ss_pred EEEEeCCccc--ccCcccceeeecHHhhcccC
Q 026891 189 KSQVIASNKF--TIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 189 ~a~~~~G~~~--~~~e~~d~~Wvt~eEl~~~~ 218 (231)
.|.+..+... ..+++.++.|++.+|+.+.+
T Consensus 95 ~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~ 126 (142)
T cd04700 95 LAEPEGQTLAPKFTDEIAEASFFSREDVAQLY 126 (142)
T ss_pred EEEecCCccccCCCCCEEEEEEECHHHhhhcc
Confidence 8988755432 23588999999999999988
No 31
>PRK10776 nucleoside triphosphate pyrophosphohydrolase; Provisional
Probab=99.61 E-value=1.6e-14 Score=111.64 Aligned_cols=110 Identities=14% Similarity=0.166 Sum_probs=80.8
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
++.+||+||+..| ...|.|.||||++++|||+.+||.||+.||+|+++... ..++.++|.++.. ...++
T Consensus 15 ~~~vll~rR~~~~--~~~g~w~~PgG~~~~gE~~~~a~~Re~~EE~gl~~~~~----~~~~~~~~~~~~~-----~~~~~ 83 (129)
T PRK10776 15 NNEIFITRRAADA--HMAGKWEFPGGKIEAGETPEQALIRELQEEVGITVQHA----TLFEKLEYEFPDR-----HITLW 83 (129)
T ss_pred CCEEEEEEecCCC--CCCCeEECCceecCCCCCHHHHHHHHHHHHHCCceecc----eEEEEEEeeCCCc-----EEEEE
Confidence 3479999986321 24689999999999999999999999999999876531 1245556666543 36788
Q ss_pred EEEEEEeCCcccccCcccceeeecHHhhcccC-c-chHHHHHhh
Q 026891 187 FFKSQVIASNKFTIGKCEDFVWVTKDELMEYF-P-ESAEFLNKM 228 (231)
Q Consensus 187 ff~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~-p-~~~~~v~~~ 228 (231)
||.+....+... ..+..++.|++.+++..+. | ....+++.+
T Consensus 84 ~~~~~~~~~~~~-~~e~~~~~W~~~~~l~~~~~p~~~~~~~~~~ 126 (129)
T PRK10776 84 FWLVESWEGEPW-GKEGQPGRWVSQVALNADEFPPANEPIIAKL 126 (129)
T ss_pred EEEEEEECCccC-CccCCccEEecHHHCccCCCCcccHHHHHHH
Confidence 888877656543 2367889999999999876 5 555666544
No 32
>cd03674 Nudix_Hydrolase_1 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity. They also contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamil
Probab=99.61 E-value=1.3e-14 Score=115.27 Aligned_cols=116 Identities=14% Similarity=0.058 Sum_probs=75.7
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecc--cceEEEE-ecCCCCCCCCCceE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGN--APMGHMV-MQPAEKMPDVPSYK 184 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~--~P~g~~~-y~~~~~~~~~~g~k 184 (231)
..+||+++. ..|.|.+|||+++.|||+.+||.||++||+|+++....... .+..++. +..+..........
T Consensus 15 ~~vLLv~r~------~~~~w~lPgG~ve~gE~~~~aa~REl~EEtGl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (138)
T cd03674 15 GKVLLTHHR------KLGSWLQPGGHIDPDESLLEAALRELREETGIELLGLRPLSVLVDLDVHPIDGHPKRGVPGHLHL 88 (138)
T ss_pred CeEEEEEEc------CCCcEECCceecCCCCCHHHHHHHHHHHHHCCCcccceeccccccceeEeecCCCCCCCCCcEEE
Confidence 578999875 25789999999999999999999999999999765432110 0111111 11111100001123
Q ss_pred EEEEEEEEeCCccc--ccCcccceeeecHHhhcccC--cchHHHHHhhh
Q 026891 185 QFFFKSQVIASNKF--TIGKCEDFVWVTKDELMEYF--PESAEFLNKMI 229 (231)
Q Consensus 185 vfff~a~~~~G~~~--~~~e~~d~~Wvt~eEl~~~~--p~~~~~v~~~l 229 (231)
.++|.|.+..|... ..+++.++.|++.+|+.++. +....++.+.|
T Consensus 89 ~~~y~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 137 (138)
T cd03674 89 DLRFLAVAPADDVAPPKSDESDAVRWFPLDELASLELPEDVRRLVEKAL 137 (138)
T ss_pred EEEEEEEccCccccCCCCCcccccEEEcHHHhhhccCCHHHHHHHHHHh
Confidence 45688887777654 33588999999999997655 45556666554
No 33
>cd04682 Nudix_Hydrolase_23 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=8.5e-15 Score=113.56 Aligned_cols=103 Identities=15% Similarity=0.097 Sum_probs=73.9
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
++.+||++|...+.....|.|.||+|+++.|||+.+||.||+.||+|+++....+ .....|.++. .....+
T Consensus 11 ~g~vLl~~r~~~~~~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~~~----~~~~~~~~~~-----~~~~~~ 81 (122)
T cd04682 11 DGRLLLQLRDDKPGIPYPGHWDLPGGHREGGETPLECVLRELLEEIGLTLPESRI----PWFRVYPSAS-----PPGTEH 81 (122)
T ss_pred CCEEEEEEccCCCCCCCCCcEeCCCccccCCCCHHHHHHHHHHHHhCCccccccc----ceeEecccCC-----CCceEE
Confidence 3689999986321123568999999999999999999999999999998753211 1122233221 135778
Q ss_pred EEEEEEeCCc-cc-ccCcccceeeecHHhhcccC
Q 026891 187 FFKSQVIASN-KF-TIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 187 ff~a~~~~G~-~~-~~~e~~d~~Wvt~eEl~~~~ 218 (231)
+|.|...++. .. ..+++.++.|++.+||.+..
T Consensus 82 ~f~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 115 (122)
T cd04682 82 VFVVPLTAREDAILFGDEGQALRLMTVEEFLAHE 115 (122)
T ss_pred EEEEEEecCCCccccCchhheeecccHHHHhhcc
Confidence 8888887664 22 23588999999999998765
No 34
>cd04689 Nudix_Hydrolase_30 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate sp
Probab=99.60 E-value=8.7e-15 Score=113.72 Aligned_cols=101 Identities=20% Similarity=0.145 Sum_probs=71.4
Q ss_pred CCcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEE
Q 026891 106 DRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQ 185 (231)
Q Consensus 106 ~~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kv 185 (231)
+++.+||+++. ..+.|.||||+++.|||+.+||.||++||+|+++... .+++.+.+.+.... .......
T Consensus 10 ~~~~vLlv~~~------~~~~~~lPGG~ve~gEt~~~aa~REl~EEtGl~~~~~----~~l~~~~~~~~~~~-~~~~~~~ 78 (125)
T cd04689 10 AGNKVLLARVI------GQPHYFLPGGHVEPGETAENALRRELQEELGVAVSDG----RFLGAIENQWHEKG-VRTHEIN 78 (125)
T ss_pred eCCEEEEEEec------CCCCEECCCCcCCCCCCHHHHHHHHHHHHhCceeecc----EEEEEEeeeeccCC-ceEEEEE
Confidence 35679999875 2578999999999999999999999999999987642 24454443332211 0123456
Q ss_pred EEEEEEEeCCc----ccccCcccceeeecHHhhccc
Q 026891 186 FFFKSQVIASN----KFTIGKCEDFVWVTKDELMEY 217 (231)
Q Consensus 186 fff~a~~~~G~----~~~~~e~~d~~Wvt~eEl~~~ 217 (231)
++|.|....+. ....+++.+++|++.+|+..+
T Consensus 79 ~~f~~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~ 114 (125)
T cd04689 79 HIFAVESSWLASDGPPQADEDHLSFSWVPVSDLSLY 114 (125)
T ss_pred EEEEEEcccccccCCccCccceEEEEEccHHHcccC
Confidence 88888876442 122236889999999998644
No 35
>cd04688 Nudix_Hydrolase_29 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=1e-14 Score=113.51 Aligned_cols=100 Identities=16% Similarity=0.144 Sum_probs=73.4
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
..+||+++. ..+.|.||||+++.|||+.+||.||+.||+|+++.+. ..++.+.+.+.... ......++|
T Consensus 12 ~~vLl~~~~------~~~~w~lPgG~ve~gEs~~~aa~RE~~EEtGl~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~ 80 (126)
T cd04688 12 GKLLVQKNP------DETFYRPPGGGIEFGESSEEALIREFKEELGLKIEIT----RLLGVVENIFTYNG-KPGHEIEFY 80 (126)
T ss_pred CEEEEEEeC------CCCeEECCCccccCCCCHHHHHHHHHHHHhCCceecc----eeeEEEEEeeccCC-cccEEEEEE
Confidence 468898875 2578999999999999999999999999999977653 12333322211111 123467899
Q ss_pred EEEEEeCCcccc--------cCcccceeeecHHhhcccC
Q 026891 188 FKSQVIASNKFT--------IGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 188 f~a~~~~G~~~~--------~~e~~d~~Wvt~eEl~~~~ 218 (231)
|.|.+.++.... ..++.++.|++.++|....
T Consensus 81 f~~~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~~l~~~~ 119 (126)
T cd04688 81 YLVTLLDESLYQQDIEILEEEGEKIVFRWIPIDELKEIK 119 (126)
T ss_pred EEEEeCCCcccccccceeccCCCEEEEEEeeHHHcccCc
Confidence 999998776532 2478899999999998765
No 36
>cd04671 Nudix_Hydrolase_13 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.60 E-value=1.2e-14 Score=113.75 Aligned_cols=100 Identities=12% Similarity=0.187 Sum_probs=73.8
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
++.+||+++.+ .+..+.|.||||+++.|||+++||.||++||+|+.+.+. ..++++. .+ .+...+
T Consensus 11 ~~~vLl~~r~~---~~~~~~w~lPgG~ve~gEt~~~aa~REl~EEtG~~~~~~----~~~~~~~--~~------~~~~~~ 75 (123)
T cd04671 11 QGEVLLIQEAK---RSCRGKWYLPAGRMEPGETIEEAVKREVKEETGLDCEPT----TLLSVEE--QG------GSWFRF 75 (123)
T ss_pred CCEEEEEEecC---CCCCCeEECceeecCCCCCHHHHHHHHHHHHHCCeeecc----eEEEEEc--cC------CeEEEE
Confidence 46799998863 235688999999999999999999999999999988653 1233321 11 124578
Q ss_pred EEEEEEeCCccccc----CcccceeeecHHhhcccC-cch
Q 026891 187 FFKSQVIASNKFTI----GKCEDFVWVTKDELMEYF-PES 221 (231)
Q Consensus 187 ff~a~~~~G~~~~~----~e~~d~~Wvt~eEl~~~~-p~~ 221 (231)
+|.|+..+|.+... .++.+++|++.+||.-.+ +++
T Consensus 76 ~f~a~~~~g~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~ 115 (123)
T cd04671 76 VFTGNITGGDLKTEKEADSESLQARWYSNKDLPLPLRAHD 115 (123)
T ss_pred EEEEEEeCCeEccCCCCCcceEEEEEECHHHCCCccchhe
Confidence 88999998876432 256699999999995444 444
No 37
>cd04666 Nudix_Hydrolase_9 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.60 E-value=1.1e-14 Score=113.88 Aligned_cols=102 Identities=16% Similarity=0.140 Sum_probs=76.0
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
+..+||++++. .+.|.||||+++.|||+.+||.||+.||+|+++.+. ...++.+.|.++... ......++
T Consensus 14 ~~~vLLv~~~~------~~~w~~PgG~ve~~E~~~~aa~RE~~EEtG~~~~~~---~~~l~~~~~~~~~~~-~~~~~~~~ 83 (122)
T cd04666 14 EVEVLLVTSRR------TGRWIVPKGGPEKDESPAEAAAREAWEEAGVRGKIG---KRPLGRFEYRKRSKN-RPPRCEVA 83 (122)
T ss_pred ceEEEEEEecC------CCeEECCCCCcCCCCCHHHHHHHHHHHHhCCccccc---ceEEEEEEeeecCCC-CCceEEEE
Confidence 35799998752 378999999999999999999999999999986542 134666666554321 12357889
Q ss_pred EEEEEEeCCccc-ccCcccceeeecHHhhcccC
Q 026891 187 FFKSQVIASNKF-TIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 187 ff~a~~~~G~~~-~~~e~~d~~Wvt~eEl~~~~ 218 (231)
||.+...+.... ...++.++.|++.+|+.+++
T Consensus 84 ~f~~~~~~~~~~~~~~e~~~~~W~~~~ea~~~~ 116 (122)
T cd04666 84 VFPLEVTEELDEWPEMHQRKRKWFSPEEAALLV 116 (122)
T ss_pred EEEEEEeccccCCcccCceEEEEecHHHHHHhc
Confidence 998887654322 22356799999999998877
No 38
>cd03425 MutT_pyrophosphohydrolase The MutT pyrophosphohydrolase is a prototypical Nudix hydrolase that catalyzes the hydrolysis of nucleoside and deoxynucleoside triphosphates (NTPs and dNTPs) by substitution at a beta-phosphorus to yield a nucleotide monophosphate (NMP) and inorganic pyrophosphate (PPi). This enzyme requires two divalent cations for activity; one coordinates the phosphoryl groups of the NTP/dNTP substrate, and the other coordinates to the enzyme. It also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as metal binding and catalytic site. MutT pyrophosphohydrolase is important in preventing errors in DNA replication by hydrolyzing mutagenic nucleotides such as 8-oxo-dGTP (a product of oxidative damage), which can mispair with template adenine during DNA replication, to guanine nucleotides.
Probab=99.59 E-value=2.7e-14 Score=109.01 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=82.5
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
..+||++|+.. +...|.|.||+|.++.||++.+||.||+.||+|.++.. ..+++.++|.++.. ...+++
T Consensus 13 ~~~Ll~~r~~~--~~~~g~w~~p~G~~~~~e~~~~~a~Re~~EE~g~~~~~----~~~~~~~~~~~~~~-----~~~~~~ 81 (124)
T cd03425 13 GRILIAQRPAG--KHLGGLWEFPGGKVEPGETPEQALVRELREELGIEVEV----GELLATVEHDYPDK-----RVTLHV 81 (124)
T ss_pred CEEEEEEeCCC--CCCCCeEeCCCcccCCCCCHHHHHHHHHHHhhCcEEec----cceEEEEEeeCCCC-----eEEEEE
Confidence 67899988631 13578999999999999999999999999999987654 23466666666532 467899
Q ss_pred EEEEEeCCcccccCcccceeeecHHhhcccC-c-chHHHHH
Q 026891 188 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF-P-ESAEFLN 226 (231)
Q Consensus 188 f~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~-p-~~~~~v~ 226 (231)
|.|.+..+... ..+..++.|++.+|+.++. + .+..+++
T Consensus 82 ~~~~~~~~~~~-~~e~~~~~W~~~~el~~~~~~~~~~~~l~ 121 (124)
T cd03425 82 FLVELWSGEPQ-LLEHQELRWVPPEELDDLDFPPADVPIVA 121 (124)
T ss_pred EEEeeeCCCcc-cccCceEEEeeHHHcccCCCCcccHHHHH
Confidence 99988766543 2467899999999999986 4 5556655
No 39
>PRK00714 RNA pyrophosphohydrolase; Reviewed
Probab=99.59 E-value=1.4e-14 Score=117.97 Aligned_cols=116 Identities=10% Similarity=0.113 Sum_probs=81.2
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeE-EEecccceEEEEecCCCC-----CCCC
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHT-YFVGNAPMGHMVMQPAEK-----MPDV 180 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v-~~vg~~P~g~~~y~~~~~-----~~~~ 180 (231)
++.+||+++.. ..+.|.||+|++++|||+++||.||++||+|+++.. ..++..+ ..+.|.++.. ....
T Consensus 19 ~g~vLL~~r~~-----~~~~w~~P~G~~~~gE~~~~aa~REl~EEtG~~~~~~~~~~~~~-~~~~y~~~~~~~~~~~~~~ 92 (156)
T PRK00714 19 QGQVFWGRRIG-----QGHSWQFPQGGIDPGETPEQAMYRELYEEVGLRPEDVEILAETR-DWLRYDLPKRLVRRSKGVY 92 (156)
T ss_pred CCEEEEEEEcC-----CCCeEECCcccCCCCcCHHHHHHHHHHHHhCCCccceEEEEEcC-CeEEecCcHHHhhccCCcc
Confidence 34699998852 247899999999999999999999999999998753 2333322 2345555432 1113
Q ss_pred CceEEEEEEEEEeCCc--cccc----CcccceeeecHHhhcccC-cchHHHHHhh
Q 026891 181 PSYKQFFFKSQVIASN--KFTI----GKCEDFVWVTKDELMEYF-PESAEFLNKM 228 (231)
Q Consensus 181 ~g~kvfff~a~~~~G~--~~~~----~e~~d~~Wvt~eEl~~~~-p~~~~~v~~~ 228 (231)
.|..++||.|....+. +.+. +++.+++|++.+|+.+.+ +..+.++.++
T Consensus 93 ~~~~~~~fl~~~~~~~~~~~l~~~~~~E~~~~~W~~~del~~~~~~~~r~~~~~~ 147 (156)
T PRK00714 93 RGQKQKWFLLRLTGDDSEINLNTTSHPEFDAWRWVSYWYPLDQVVPFKRDVYRRV 147 (156)
T ss_pred cCcEEEEEEEEecCCCccccCCCCCCCCeeeeEeCCHHHHHHhchhhhHHHHHHH
Confidence 4557889999886443 2221 378899999999999987 6545555544
No 40
>cd03429 NADH_pyrophosphatase NADH pyrophosphatase, a member of the Nudix hydrolase superfamily, catalyzes the cleavage of NADH into reduced nicotinamide mononucleotide (NMNH) and AMP. Like other members of the Nudix family, it requires a divalent cation, such as Mg2+ or Mn2+, for activity. Members of this family are also recognized by the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. A block of 8 conserved amino acids downstream of the nudix motif is thought to give NADH pyrophosphatase its specificity for NADH. NADH pyrophosphatase forms a dimer.
Probab=99.59 E-value=1e-14 Score=115.10 Aligned_cols=95 Identities=15% Similarity=0.117 Sum_probs=71.4
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
..+||++|.. ...|.|.||||+++.|||+.+||.||++||+|+++... ..++.+.+.++ ...+++
T Consensus 12 ~~vLL~~r~~----~~~~~w~lPgG~ie~gEt~~~aA~REl~EEtGl~~~~~----~~l~~~~~~~~-------~~~~~~ 76 (131)
T cd03429 12 DRILLARQPR----FPPGMYSLLAGFVEPGESLEEAVRREVKEEVGIRVKNI----RYVGSQPWPFP-------SSLMLG 76 (131)
T ss_pred CEEEEEEecC----CCCCcCcCCcccccCCCCHHHHHhhhhhhccCceeeee----EEEeecCCCCC-------ceEEEE
Confidence 5689998863 23689999999999999999999999999999977542 12333323222 235677
Q ss_pred EEEEEeCCccccc-CcccceeeecHHhhccc
Q 026891 188 FKSQVIASNKFTI-GKCEDFVWVTKDELMEY 217 (231)
Q Consensus 188 f~a~~~~G~~~~~-~e~~d~~Wvt~eEl~~~ 217 (231)
|.|....+..... +++.++.|++.+||.+.
T Consensus 77 f~~~~~~~~~~~~~~E~~~~~w~~~~el~~~ 107 (131)
T cd03429 77 FTAEADSGEIVVDDDELEDARWFSRDEVRAA 107 (131)
T ss_pred EEEEEcCCcccCCchhhhccEeecHHHHhhc
Confidence 8888877665433 47899999999998874
No 41
>cd03672 Dcp2p mRNA decapping enzyme 2 (Dcp2p), the catalytic subunit, and Dcp1p are the two components of the decapping enzyme complex. Decapping is a key step in both general and nonsense-mediated 5'-3' mRNA-decay pathways. Dcp2p contains an all-alpha helical N-terminal domain and a C-terminal domain which has the Nudix fold. While decapping is not dependent on the N-terminus of Dcp2p, it does affect its efficiency. Dcp1p binds the N-terminal domain of Dcp2p stimulating the decapping activity of Dcp2p. Decapping permits the degradation of the transcript and is a site of numerous control inputs. It is responsible for nonsense-mediated decay as well as AU-rich element (ARE)-mediated decay. In addition, it may also play a role in the levels of mRNA. Enzymes belonging to the Nudix superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V).
Probab=99.59 E-value=3.9e-15 Score=119.90 Aligned_cols=95 Identities=14% Similarity=0.159 Sum_probs=66.1
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
..+||+++.. .+.|+||||+++.|||+.+||.||++||||+++..+.. + ..+.. ... .+..+.+
T Consensus 14 ~~vLLvr~~~------~~~W~lPGG~ve~gEs~~~AA~REl~EETGl~v~~~~~---~-~~~~~--~~~----~~~~~~~ 77 (145)
T cd03672 14 DKVLLVKGWK------SKSWSFPKGKINKDEDDHDCAIREVYEETGFDISKYID---K-DDYIE--LII----RGQNVKL 77 (145)
T ss_pred CEEEEEEecC------CCCEECCCccCCCCcCHHHHHHHHHHHhhCccceeccc---c-ceeee--ccc----CCcEEEE
Confidence 4799998752 35899999999999999999999999999998775321 1 11111 111 1234555
Q ss_pred EEEEEeCCcc----cccCcccceeeecHHhhcccC
Q 026891 188 FKSQVIASNK----FTIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 188 f~a~~~~G~~----~~~~e~~d~~Wvt~eEl~~~~ 218 (231)
|.+....+.. ...+++.++.|++.+|+.+.+
T Consensus 78 f~~~~~~~~~~~~~~~~~E~~~~~Wv~~~el~~~~ 112 (145)
T cd03672 78 YIVPGVPEDTPFEPKTRKEISKIEWFDIKDLPTKK 112 (145)
T ss_pred EEEecCCCCcccCcCChhhhheEEEeeHHHhhhhh
Confidence 5555444322 122478999999999999877
No 42
>cd04676 Nudix_Hydrolase_17 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.58 E-value=3.1e-14 Score=109.76 Aligned_cols=108 Identities=19% Similarity=0.230 Sum_probs=73.9
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEE-ec--ccceEEEEecCCCCCCCCCceE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYF-VG--NAPMGHMVMQPAEKMPDVPSYK 184 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~-vg--~~P~g~~~y~~~~~~~~~~g~k 184 (231)
+.+||++|.. .|.|.||+|+++.|||+.+||.||++||+|+++...- ++ ..+. +.+.++... .....
T Consensus 14 ~~vLl~~r~~------~~~w~lPgG~v~~~E~~~~aa~REl~EE~Gl~~~~~~~~~~~~~~~--~~~~~~~~~--~~~~~ 83 (129)
T cd04676 14 GRVLLIRRSD------NGLWALPGGAVEPGESPADTAVREVREETGLDVEVTGLVGIYTGPV--HVVTYPNGD--VRQYL 83 (129)
T ss_pred CeEEEEEecC------CCcEECCeeccCCCCCHHHHHHHHHHHHhCceeEeeEEEEEeeccc--ceeecCCCC--cEEEE
Confidence 5789998862 3889999999999999999999999999999775421 11 0011 112222210 11345
Q ss_pred EEEEEEEEeCCccc-ccCcccceeeecHHhhcccC-c-chHHHH
Q 026891 185 QFFFKSQVIASNKF-TIGKCEDFVWVTKDELMEYF-P-ESAEFL 225 (231)
Q Consensus 185 vfff~a~~~~G~~~-~~~e~~d~~Wvt~eEl~~~~-p-~~~~~v 225 (231)
.++|.|...++... ...++.++.|++.+|+.++. + ....++
T Consensus 84 ~~~~~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~~~~~~~~~~ 127 (129)
T cd04676 84 DITFRCRVVGGELRVGDDESLDVAWFDPDGLPPLLMHPSMRLRI 127 (129)
T ss_pred EEEEEEEeeCCeecCCCCceeEEEEEChhhCccccCCHhHHHHh
Confidence 67777887776542 23478899999999999987 4 444443
No 43
>cd04511 Nudix_Hydrolase_4 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specifici
Probab=99.57 E-value=2.7e-14 Score=112.12 Aligned_cols=95 Identities=12% Similarity=0.090 Sum_probs=73.8
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
+..+||++|.. .+..|.|.||||+++.|||+.+||.||++||+|.++... ..++++. .+. .+...+
T Consensus 23 ~~~vLL~kr~~---~~~~g~w~lPgG~ve~gE~~~~a~~REl~EEtGl~~~~~----~~~~~~~--~~~-----~~~~~~ 88 (130)
T cd04511 23 EGKVLLCRRAI---EPRHGFWTLPAGFMENGETTEQGALRETWEEAGARVEID----GLYAVYS--VPH-----ISQVYM 88 (130)
T ss_pred CCEEEEEEecC---CCCCCeEECCcccccCCCCHHHHHHHHHHHHhCCEEEee----eEEEEEe--cCC-----ceEEEE
Confidence 35699998863 235689999999999999999999999999999987542 2344443 232 135678
Q ss_pred EEEEEEeCCcccccCcccceeeecHHhhc
Q 026891 187 FFKSQVIASNKFTIGKCEDFVWVTKDELM 215 (231)
Q Consensus 187 ff~a~~~~G~~~~~~e~~d~~Wvt~eEl~ 215 (231)
||.|.+.++.+....++.+..|++.++|.
T Consensus 89 ~f~~~~~~~~~~~~~e~~~~~~~~~~~l~ 117 (130)
T cd04511 89 FYRARLLDLDFAPGPESLEVRLFTEEEIP 117 (130)
T ss_pred EEEEEEcCCcccCCcchhceEEECHHHCC
Confidence 89999988776555578899999999996
No 44
>cd04667 Nudix_Hydrolase_10 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.57 E-value=2.8e-14 Score=109.03 Aligned_cols=94 Identities=18% Similarity=0.180 Sum_probs=70.1
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
++.+||++++ .|.|.||||+++.|||+.+||.||+.||+|+.+... ..++ .+.. . ....+
T Consensus 10 ~~~vLlv~r~-------~~~w~~PgG~ve~gE~~~~aa~REl~EEtGl~~~~~----~~~~--~~~~--~-----~~~~~ 69 (112)
T cd04667 10 GGRVLLVRKS-------GSRWALPGGKIEPGETPLQAARRELQEETGLQGLDL----LYLF--HVDG--G-----STRHH 69 (112)
T ss_pred CCEEEEEEcC-------CCcEeCCCCcCCCCCCHHHHHHHHHHHHhCCcccce----EEEE--EEeC--C-----CEEEE
Confidence 4579999975 378999999999999999999999999999976431 1122 2211 1 24567
Q ss_pred EEEEEEeCCcc-cccCcccceeeecHHhhcccC-cc
Q 026891 187 FFKSQVIASNK-FTIGKCEDFVWVTKDELMEYF-PE 220 (231)
Q Consensus 187 ff~a~~~~G~~-~~~~e~~d~~Wvt~eEl~~~~-p~ 220 (231)
+|.|.+..+.. ...+++.++.|++.+|+.++. +.
T Consensus 70 ~f~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~ 105 (112)
T cd04667 70 VFVASVPPSAQPKPSNEIADCRWLSLDALGDLNASA 105 (112)
T ss_pred EEEEEcCCcCCCCCchheeEEEEecHHHhhhcccch
Confidence 88888765533 233578899999999999887 54
No 45
>cd04693 Nudix_Hydrolase_34 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=1.8e-14 Score=112.30 Aligned_cols=102 Identities=15% Similarity=0.174 Sum_probs=69.7
Q ss_pred CcEEEEEeccCCCCCCCCCceecC-ceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFP-EKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQ 185 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP-~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kv 185 (231)
++.+||++|...+ ....|.|.|| ||+++.|||+ +||.||++||+|+++.+. .-.+++.+.+..+. ...+
T Consensus 11 ~g~vLl~~R~~~~-~~~pg~w~~p~GG~ve~gE~~-~aa~REl~EEtGl~~~~~--~~~~~~~~~~~~~~------~~~~ 80 (127)
T cd04693 11 KGELLLQKRSPNK-DGWPGMWDLSVGGHVQAGETS-TAAEREVKEELGLELDFS--ELRPLFRYFFEAEG------FDDY 80 (127)
T ss_pred CCeEEEEEccCCC-CCCCCcccccCCCcCCCCCCH-HHHHHHHHHHhCCCcChh--hcEEEEEEEeecCC------eEEE
Confidence 3568999886321 2345899998 8999999999 999999999999987642 11234444443321 1233
Q ss_pred EEEEEEEeCCccccc-CcccceeeecHHhhcccC
Q 026891 186 FFFKSQVIASNKFTI-GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 186 fff~a~~~~G~~~~~-~e~~d~~Wvt~eEl~~~~ 218 (231)
++|.+....+..... +++.++.|++.+|+.+.+
T Consensus 81 ~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~ 114 (127)
T cd04693 81 YLFYADVEIGKLILQKEEVDEVKFVSKDEIDGLI 114 (127)
T ss_pred EEEEecCcccccccCHHHhhhEEEeCHHHHHHHH
Confidence 444444444444332 478999999999999887
No 46
>cd04690 Nudix_Hydrolase_31 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.56 E-value=4.2e-14 Score=108.43 Aligned_cols=100 Identities=14% Similarity=0.173 Sum_probs=70.8
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
..+||++++ ..+.|.||||.+++||++.+||.||++||+|+++....+ ..++.+.+..... ......+++
T Consensus 12 ~~vLl~~r~------~~~~w~~PgG~ve~~Es~~~aa~REl~EEtGl~~~~~~~--~~~~~~~~~~~~~--~~~~~~~~~ 81 (118)
T cd04690 12 GRVLLVRKR------GTDVFYLPGGKIEAGETPLQALIRELSEELGLDLDPDSL--EYLGTFRAPAANE--PGVDVRATV 81 (118)
T ss_pred CeEEEEEEC------CCCcEECCCCccCCCCCHHHHHHHHHHHHHCCccChhhe--EEEEEEecccccC--CCcEEEEEE
Confidence 468888875 257899999999999999999999999999997654101 1233332211111 112467888
Q ss_pred EEEEEeCCcccccCcccceeeecHHhhcccC
Q 026891 188 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 188 f~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~ 218 (231)
|.|.... .+....++.++.|++.+|+....
T Consensus 82 f~~~~~~-~~~~~~e~~~~~W~~~~e~~~~~ 111 (118)
T cd04690 82 YVAELTG-EPVPAAEIEEIRWVDYDDPADDR 111 (118)
T ss_pred EEEcccC-CcCCCchhhccEEecHHHccccc
Confidence 9888764 44444588999999999986655
No 47
>PF00293 NUDIX: NUDIX domain; InterPro: IPR000086 The generic name 'NUDIX hydrolases' (NUcleoside DIphosphate linked to some other moiety X) has been coined for this domain family []. The family can be divided into a number of subgroups, of which MutT anti- mutagenic activity represents only one type; most of the rest hydrolyse diverse nucleoside diphosphate derivatives (including ADP-ribose, GDP- mannose, TDP-glucose, NADH, UDP-sugars, dNTP and NTP).; GO: 0016787 hydrolase activity; PDB: 3FJY_A 3MGM_A 2XSQ_A 3COU_A 2O5F_A 1Q27_A 3F6A_A 3E57_B 3SON_B 2GT4_C ....
Probab=99.55 E-value=3.1e-14 Score=110.33 Aligned_cols=114 Identities=16% Similarity=0.159 Sum_probs=79.6
Q ss_pred EEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEEE
Q 026891 109 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFF 188 (231)
Q Consensus 109 l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff 188 (231)
.+||+++.+.+ ....+.|.||||++++|||+.+||.||+.||+|+++.... . .+...+..+... ..+..+++|
T Consensus 15 ~vLl~~r~~~~-~~~~~~~~~pgG~i~~~E~~~~aa~REl~EE~g~~~~~~~--~--~~~~~~~~~~~~--~~~~~~~~~ 87 (134)
T PF00293_consen 15 KVLLIKRSRSP-ITFPGYWELPGGGIEPGESPEEAARRELKEETGLDVSPLE--L--LGLFSYPSPSGD--PEGEIVIFF 87 (134)
T ss_dssp EEEEEEESTTS-SSSTTEEESSEEEECTTSHHHHHHHHHHHHHHSEEEEEEE--E--EEEEEEEETTTE--SSEEEEEEE
T ss_pred EEEEEEecCCC-CCCCCeEecceeeEEcCCchhhhHHhhhhhcccceecccc--c--ceeeeecccCCC--cccEEEEEE
Confidence 79999987421 1245899999999999999999999999999999874321 1 222333322221 124688888
Q ss_pred EEEEeCCccc--cc-CcccceeeecHHhhcccC-c-chHHHHHhhh
Q 026891 189 KSQVIASNKF--TI-GKCEDFVWVTKDELMEYF-P-ESAEFLNKMI 229 (231)
Q Consensus 189 ~a~~~~G~~~--~~-~e~~d~~Wvt~eEl~~~~-p-~~~~~v~~~l 229 (231)
.+.+..+... .. .++.++.|++.+|+.+.. . .....+..++
T Consensus 88 ~~~~~~~~~~~~~~~~e~~~~~W~~~~el~~~~~~~~~~~~i~~~~ 133 (134)
T PF00293_consen 88 IAELPSEQSEIQPQDEEISEVKWVPPDELLELLLNGRIRKIIPWLY 133 (134)
T ss_dssp EEEEEEEESECHTTTTTEEEEEEEEHHHHHHHHHTTHHHHHHHHHH
T ss_pred EEEEeCCccccCCCCccEEEEEEEEHHHhhhchhCcchhhhhcccc
Confidence 8888766522 22 388999999999999988 4 3334555544
No 48
>cd04670 Nudix_Hydrolase_12 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.55 E-value=7.4e-14 Score=108.77 Aligned_cols=98 Identities=10% Similarity=0.103 Sum_probs=67.7
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
+.+||++++. +.++.|.||||+++.|||+.+||.||++||+|+.+.... .++...+. +.. .+...+|
T Consensus 14 ~~vLl~~r~~----~~~~~w~~PGG~ve~gEt~~~aa~RE~~EE~Gl~~~~~~----~~~~~~~~-~~~----~~~~~~~ 80 (127)
T cd04670 14 NEVLVVQERN----KTPNGWKLPGGLVDPGEDIFDGAVREVLEETGIDTEFVS----VVGFRHAH-PGA----FGKSDLY 80 (127)
T ss_pred CeEEEEEccC----CCCCcEECCCccCCCCCCHHHHHHHHHHHHHCCCcceeE----EEEEEecC-CCC----cCceeEE
Confidence 5699998752 246899999999999999999999999999999886542 23332221 111 1223455
Q ss_pred EEEEEeC--Ccccc-cCcccceeeecHHhhcccC
Q 026891 188 FKSQVIA--SNKFT-IGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 188 f~a~~~~--G~~~~-~~e~~d~~Wvt~eEl~~~~ 218 (231)
|.|.+.. +.+.. .+++.++.|++.+|+.+..
T Consensus 81 ~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~ 114 (127)
T cd04670 81 FICRLKPLSFDINFDTSEIAAAKWMPLEEYISQP 114 (127)
T ss_pred EEEEEccCcCcCCCChhhhheeEEEcHHHHhcch
Confidence 6676643 22222 2477899999999997654
No 49
>COG1051 ADP-ribose pyrophosphatase [Nucleotide transport and metabolism]
Probab=99.55 E-value=3.8e-14 Score=114.26 Aligned_cols=100 Identities=18% Similarity=0.234 Sum_probs=72.6
Q ss_pred EEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEEE
Q 026891 109 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFF 188 (231)
Q Consensus 109 l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff 188 (231)
.+|||+|+. .+..|.|.||||.++.|||+++||.||++||||+++...- .+++ |..+.......++.++||
T Consensus 22 ~iLLvrR~~---~p~~g~WalPGG~ve~GEt~eeaa~REl~EETgL~~~~~~----~~~v--~~~~~rd~r~~~v~~~~~ 92 (145)
T COG1051 22 RILLVRRAN---EPGAGYWALPGGFVEIGETLEEAARRELKEETGLRVRVLE----LLAV--FDDPGRDPRGHHVSFLFF 92 (145)
T ss_pred EEEEEEecC---CCCCCcEeCCCccCCCCCCHHHHHHHHHHHHhCCccccee----EEEE--ecCCCCCCceeEEEEEEE
Confidence 799999974 5677899999999999999999999999999999965421 1333 333332111234566666
Q ss_pred EEEEeCCcccccC--cccceeeecHHhhcccC
Q 026891 189 KSQVIASNKFTIG--KCEDFVWVTKDELMEYF 218 (231)
Q Consensus 189 ~a~~~~G~~~~~~--e~~d~~Wvt~eEl~~~~ 218 (231)
.|... |+....+ +..+..|++.++|....
T Consensus 93 ~~~~~-g~~~~~~~~d~~~~~~~~~~~l~~~~ 123 (145)
T COG1051 93 AAEPE-GELLAGDGDDAAEVGWFPLDELPELP 123 (145)
T ss_pred EEecC-CCcccCChhhHhhcceecHhHccccc
Confidence 66654 5443333 78899999999999765
No 50
>cd04697 Nudix_Hydrolase_38 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=8.3e-14 Score=108.88 Aligned_cols=100 Identities=14% Similarity=0.129 Sum_probs=71.1
Q ss_pred cEEEEEeccCCCCCCCCCceec-CceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHF-PEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~F-P~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
..+||++|...+ ....|.|+| |||+++.||++.+||.||+.||+|+.+.. ..+++.+.+..... .....
T Consensus 12 ~~iLl~~R~~~~-~~~~g~w~~~~GG~ve~gE~~~~aa~REl~EEtGl~~~~----l~~~~~~~~~~~~~-----~~~~~ 81 (126)
T cd04697 12 GKLCVHKRTLTK-DWCPGYWDIAFGGVVQAGESYLQNAQRELEEELGIDGVQ----LTPLGLFYYDTDGN-----RVWGK 81 (126)
T ss_pred CeEEEEECCCCC-CCCCCcccCcCCcccCCCCCHHHHHHHHHHHHHCCCccc----cEEeeEEEecCCCc-----eEEEE
Confidence 457888775321 234688999 68999999999999999999999998762 13455554432221 23445
Q ss_pred EEEEEEeCCccccc-CcccceeeecHHhhcccC
Q 026891 187 FFKSQVIASNKFTI-GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 187 ff~a~~~~G~~~~~-~e~~d~~Wvt~eEl~~~~ 218 (231)
+|.|... ++..+. +++.++.|++.+|+.+.+
T Consensus 82 ~f~~~~~-~~~~~~~~E~~~~~w~~~~el~~~~ 113 (126)
T cd04697 82 VFSCVYD-GPLKLQEEEVEEITWLSINEILQFK 113 (126)
T ss_pred EEEEEEC-CCCCCCHhHhhheEEcCHHHHHHHh
Confidence 6777663 554443 478999999999999877
No 51
>cd04677 Nudix_Hydrolase_18 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=6.9e-14 Score=109.13 Aligned_cols=100 Identities=17% Similarity=0.173 Sum_probs=68.0
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEE----ecCCCCCCCCCce
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMV----MQPAEKMPDVPSY 183 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~----y~~~~~~~~~~g~ 183 (231)
..+||++++. .+.|.||||.++.|||+.+||.||++||+|+++...- .++.+. |..+... .....
T Consensus 19 ~~vLL~~r~~------~~~w~~PgG~v~~gEt~~~aa~REl~EE~Gi~~~~~~----~~~~~~~~~~~~~~~~~-~~~~~ 87 (132)
T cd04677 19 GEVLLQKRSD------TGDWGLPGGAMELGESLEETARRELKEETGLEVEELE----LLGVYSGKEFYVKPNGD-DEQYI 87 (132)
T ss_pred CCEEEEEecC------CCcEECCeeecCCCCCHHHHHHHHHHHHhCCeeeeeE----EEEEecCCceeecCCCC-cEEEE
Confidence 3578888752 3789999999999999999999999999999876531 122221 1111110 01124
Q ss_pred EEEEEEEEEeCCcccc-cCcccceeeecHHhhcccC
Q 026891 184 KQFFFKSQVIASNKFT-IGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 184 kvfff~a~~~~G~~~~-~~e~~d~~Wvt~eEl~~~~ 218 (231)
..+||.+...++.+.. .+++.++.|++.+|+.+.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~e~~~~~W~~~~e~~~~~ 123 (132)
T cd04677 88 VTLYYVTKVFGGKLVPDGDETLELKFFSLDELPELI 123 (132)
T ss_pred EEEEEEEeccCCcccCCCCceeeEEEEChhHCccch
Confidence 4566666665555332 2478899999999999887
No 52
>cd03426 CoAse Coenzyme A pyrophosphatase (CoAse), a member of the Nudix hydrolase superfamily, functions to catalyze the elimination of oxidized inactive CoA, which can inhibit CoA-utilizing enzymes. The need of CoAses mainly arises under conditions of oxidative stress. CoAse has a conserved Nudix fold and requires a single divalent cation for catalysis. In addition to a signature Nudix motif G[X5]E[X7]REUXEEXGU, where U is Ile, Leu, or Val, CoAse contains an additional motif upstream called the NuCoA motif (LLTXT(SA)X3RX3GX3FPGG) which is postulated to be involved in CoA recognition. CoA plays a central role in lipid metabolism. It is involved in the initial steps of fatty acid sythesis in the cytosol, in the oxidation of fatty acids and the citric acid cycle in the mitochondria, and in the oxidation of long-chain fatty acids in peroxisomes. CoA has the important role of activating fatty acids for further modification into key biological signalling molecules.
Probab=99.53 E-value=6.2e-14 Score=114.01 Aligned_cols=102 Identities=10% Similarity=-0.030 Sum_probs=71.1
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCC-CCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESE-ESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQ 185 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~g-Etl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kv 185 (231)
+..+||+||.... ....|.|+||||+++.| ||+.+||.||++||+|+++... ..++.+...+.. .+..+
T Consensus 15 ~~~vLL~~R~~~~-~~~~g~w~lPGG~ve~gdEs~~eaa~REl~EEtGl~~~~~----~~l~~~~~~~~~-----~~~~v 84 (157)
T cd03426 15 ELRVLLTKRASHL-RSHPGQVAFPGGKVDPGDEDPVATALREAEEEIGLPPDSV----EVLGRLPPYYTR-----SGFVV 84 (157)
T ss_pred ceEEEEEEccccc-ccCCCcEECCCCCcCCCcCCHHHHHHHHHHHHhCCCccce----EEEEECCCcccc-----CCCEE
Confidence 3579999987321 12578999999999999 9999999999999999987642 122222111111 13456
Q ss_pred EEEEEEEeCC-ccccc-CcccceeeecHHhhcccC
Q 026891 186 FFFKSQVIAS-NKFTI-GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 186 fff~a~~~~G-~~~~~-~e~~d~~Wvt~eEl~~~~ 218 (231)
++|.|.+..+ .+.++ +++.++.|++.+|+.+..
T Consensus 85 ~~~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 119 (157)
T cd03426 85 TPVVGLVPPPLPLVLNPDEVAEVFEVPLSFLLDPA 119 (157)
T ss_pred EEEEEEECCCCCCCCCHHHhheeEEEcHHHHhCcC
Confidence 6677766543 33333 388999999999998864
No 53
>cd04699 Nudix_Hydrolase_39 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.53 E-value=6.9e-14 Score=108.27 Aligned_cols=103 Identities=16% Similarity=0.189 Sum_probs=71.1
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
..+||+||...+ ...+|.|+||+|++++|||+.+||.||++||+|+.+..... . .+.+.+.... ......++
T Consensus 13 ~~iLl~kr~~~~-~~~~g~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~~~--~-~~~~~~~~~~----~~~~~~~~ 84 (129)
T cd04699 13 GRILILKRSKDE-RTAPGKWELPGGKVEEGETFEEALKREVYEETGLTVTPFLR--Y-PSTVTHEDSG----VYNVIYLV 84 (129)
T ss_pred CcEEEEEecCCC-CCCCCcCcCCccCccCCCCHHHHHHHHHHHhhCcEEEeeee--e-eEEEEEcCCC----EEEEEEEE
Confidence 568999886311 11378999999999999999999999999999997765321 1 1222222111 01244567
Q ss_pred EEEEEeCCcccccCcccceeeecHHhhcccC
Q 026891 188 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 188 f~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~ 218 (231)
|.|....+.....+++.++.|++.+|+..+.
T Consensus 85 ~~~~~~~~~~~~~~e~~~~~w~~~~el~~~~ 115 (129)
T cd04699 85 FVCEALSGAVKLSDEHEEYAWVTLEELAILK 115 (129)
T ss_pred EEeeecCCcccCChhheEEEEecHHHhhhhh
Confidence 7787776543333578899999999997666
No 54
>PRK05379 bifunctional nicotinamide mononucleotide adenylyltransferase/ADP-ribose pyrophosphatase; Provisional
Probab=99.52 E-value=1.3e-13 Score=125.45 Aligned_cols=119 Identities=14% Similarity=0.177 Sum_probs=81.4
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
++.+||++|+. .+.+|.|.||||+++.|||+.+||.||++||||+++....+...-.....|.++.... ......+
T Consensus 213 ~g~VLLvrR~~---~p~~g~W~lPGG~ve~gEt~~~Aa~REl~EETGl~v~~~~l~~~~~~~~~f~~p~r~~-~~~~i~~ 288 (340)
T PRK05379 213 SGHVLLVRRRA---EPGKGLWALPGGFLEQDETLLDACLRELREETGLKLPEPVLRGSIRDQQVFDHPGRSL-RGRTITH 288 (340)
T ss_pred CCEEEEEEecC---CCCCCeEECCcccCCCCCCHHHHHHHHHHHHHCCcccccccceeeeeeEEEcCCCCCC-CCcEEEE
Confidence 45799999863 2457899999999999999999999999999999875421111111123344443211 1124456
Q ss_pred EEEEEEeCCcc---cccCcccceeeecHHhhccc---C-cchHHHHHhhh
Q 026891 187 FFKSQVIASNK---FTIGKCEDFVWVTKDELMEY---F-PESAEFLNKMI 229 (231)
Q Consensus 187 ff~a~~~~G~~---~~~~e~~d~~Wvt~eEl~~~---~-p~~~~~v~~~l 229 (231)
+|.|.+..|.. ...+++.++.|++.+|+... + .....+++.|+
T Consensus 289 ~f~~~~~~~~~~~~~~~de~~~~~W~~~~el~~~~~~~~~dh~~ii~~~~ 338 (340)
T PRK05379 289 AFLFEFPAGELPRVKGGDDADKARWVPLAELLAMRDRMFEDHFQIITHFL 338 (340)
T ss_pred EEEEEecCCccCccCCCCceeeEEEEEHHHhhhhhhhhhhHHHHHHHHHh
Confidence 67777665542 23357899999999999874 3 56667887776
No 55
>cd04692 Nudix_Hydrolase_33 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.51 E-value=1e-13 Score=110.74 Aligned_cols=108 Identities=11% Similarity=0.048 Sum_probs=71.4
Q ss_pred cEEEEEeccCCCCCCCCCceec-CceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHF-PEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~F-P~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
..+|+.+|...+ ....|.|.| |+|+++.|||+.+||.|||+||+|+.+...-+ .+++.+.+.+............+
T Consensus 17 ~~vLl~~R~~~~-~~~pg~W~~~~gG~ve~gEt~~~aa~REl~EEtGl~~~~~~l--~~~~~~~~~~~~~~~~~~~~~~~ 93 (144)
T cd04692 17 GYVLLQKRSANK-KTYPGLWDISSAGHILAGETPLEDGIRELEEELGLDVSADDL--IPLGTFKIEYDHIGKLIDREFHH 93 (144)
T ss_pred CEEEEEecCCCC-CCCCCccccccCcccCCCCCHHHHHHHHHHHHhCCCCChHHe--EEeeEEEEeccccCCCccceEEE
Confidence 578888876322 245689999 59999999999999999999999997643111 12344444332110001112345
Q ss_pred EEEEEEeC--Cccccc-CcccceeeecHHhhcccC
Q 026891 187 FFKSQVIA--SNKFTI-GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 187 ff~a~~~~--G~~~~~-~e~~d~~Wvt~eEl~~~~ 218 (231)
+|.|.... +.+.+. +++.++.|++.+|+.+.+
T Consensus 94 ~f~~~~~~~~~~~~~~~~E~~~~~W~~~~el~~~~ 128 (144)
T cd04692 94 VYLYELKVPLEEFTLQKEEVAGVVLIPLDEFAELL 128 (144)
T ss_pred EEEEeccCChhhcCCChhHhheEEEECHHHHHHHH
Confidence 66666554 444333 488999999999998887
No 56
>PRK00241 nudC NADH pyrophosphatase; Reviewed
Probab=99.48 E-value=2.9e-13 Score=118.74 Aligned_cols=105 Identities=13% Similarity=0.084 Sum_probs=76.8
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
..+||+++.. ...|.|.||+|.++.|||+++||.||++||+|+++...- .++...+.++. ..+++
T Consensus 143 ~~iLL~rr~~----~~~g~wslPgG~vE~GEs~eeAa~REv~EEtGl~v~~~~----~~~s~~~~~p~-------~lm~~ 207 (256)
T PRK00241 143 DEILLARHPR----HRNGVYTVLAGFVEVGETLEQCVAREVMEESGIKVKNLR----YVGSQPWPFPH-------SLMLG 207 (256)
T ss_pred CEEEEEEccC----CCCCcEeCcccCCCCCCCHHHHhhhhhhhccCceeeeeE----EEEeEeecCCC-------eEEEE
Confidence 5699998763 236899999999999999999999999999999765421 23333333332 46788
Q ss_pred EEEEEeCCccccc-CcccceeeecHHhhcccCcchHHHHHhh
Q 026891 188 FKSQVIASNKFTI-GKCEDFVWVTKDELMEYFPESAEFLNKM 228 (231)
Q Consensus 188 f~a~~~~G~~~~~-~e~~d~~Wvt~eEl~~~~p~~~~~v~~~ 228 (231)
|.|.+.+|++.+. +|+.+..|++.+|+.... ....+..+|
T Consensus 208 f~a~~~~~~~~~~~~Ei~~a~W~~~del~~lp-~~~sia~~l 248 (256)
T PRK00241 208 FHADYDSGEIVFDPKEIADAQWFRYDELPLLP-PSGTIARRL 248 (256)
T ss_pred EEEEecCCcccCCcccEEEEEEECHHHCcccC-CchHHHHHH
Confidence 8899887776554 378899999999998755 332344443
No 57
>cd04686 Nudix_Hydrolase_27 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.48 E-value=3.3e-13 Score=106.32 Aligned_cols=103 Identities=17% Similarity=0.186 Sum_probs=68.2
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCC--CCCceE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMP--DVPSYK 184 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~--~~~g~k 184 (231)
+..+||+++.+ .+.|.||||+++.|||+.+||.||++||+|+.+... ..+++.+...++.... ...+..
T Consensus 10 ~~~vLLv~~~~------~~~w~lPgG~ve~gEt~~~aa~REl~EEtGl~~~~~---~~~l~~~~~~~~~~~~~~~~~~~~ 80 (131)
T cd04686 10 GDKILLLYTKR------YGDYKFPGGGVEKGEDHIEGLIRELQEETGATNIRV---IEKFGTYTERRPWRKPDADIFHMI 80 (131)
T ss_pred CCEEEEEEEcC------CCcEECccccCCCCCCHHHHHHHHHHHHHCCccccc---ceEEEEEEeeccccCCCCceeEEE
Confidence 45699998752 368999999999999999999999999999975211 1233443321111110 122456
Q ss_pred EEEEEEEEeCCc--ccccC-c---ccceeeecHHhhcccC
Q 026891 185 QFFFKSQVIASN--KFTIG-K---CEDFVWVTKDELMEYF 218 (231)
Q Consensus 185 vfff~a~~~~G~--~~~~~-e---~~d~~Wvt~eEl~~~~ 218 (231)
.+||.|.+..+. ..+.. + ..++.|++.+|+....
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~e~~~~~~~~W~~~~ea~~~~ 120 (131)
T cd04686 81 SYYYLCEVDAELGAQQLEDYEAELGMKPIWINIHEAIEHN 120 (131)
T ss_pred EEEEEEEEcCCcCCcccchhhHhcCCCcEEecHHHHHHhh
Confidence 789999987543 22221 1 1258999999997755
No 58
>cd03424 ADPRase_NUDT5 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose and a variety of additional ADP-sugar conjugates to AMP and ribose-5-phosphate. Like other members of the Nudix hydrolase superfamily, it requires a divalent cation, such as Mg2+, for its activity. It also contains a highly conserved 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic enzymes (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). Human ADPRase-II is also referred to as NUDT5. It lacks the N-terminal target sequence unique to mitochondrial ADPRase. The different cytosolic types are distinguished by their specificities for substrate and specific requirem
Probab=99.48 E-value=2.3e-13 Score=107.22 Aligned_cols=100 Identities=14% Similarity=0.172 Sum_probs=70.3
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
..+||+++...+ ..++.|.||+|+++.|||+.+||.||+.||+|+.+... ..++.+.+. +. .....+++
T Consensus 14 ~~iLl~~~~~~~--~~~~~w~~PgG~ve~gEs~~~aa~RE~~EE~Gl~~~~~----~~~~~~~~~-~~----~~~~~~~~ 82 (137)
T cd03424 14 GKVVLVRQYRPP--VGGWLLELPAGLIDPGEDPEEAARRELEEETGYEAGDL----EKLGSFYPS-PG----FSDERIHL 82 (137)
T ss_pred CeEEEEEeeecC--CCCEEEEeCCccCCCCCCHHHHHHHHHHHHHCCCccce----EEEeeEecC-Cc----ccCccEEE
Confidence 568888764311 23568999999999999999999999999999988421 112222221 11 11346778
Q ss_pred EEEEEeCCcc--cc-cCcccceeeecHHhhcccC
Q 026891 188 FKSQVIASNK--FT-IGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 188 f~a~~~~G~~--~~-~~e~~d~~Wvt~eEl~~~~ 218 (231)
|.|....+.. .. ..++.++.|++.+|+.+.+
T Consensus 83 ~~~~~~~~~~~~~~~~~E~~~~~w~~~~el~~~~ 116 (137)
T cd03424 83 FLAEDLSPGEEGLLDEGEDIEVVLVPLDEALELL 116 (137)
T ss_pred EEEEcccccccCCCCCCCeeEEEEecHHHHHHHH
Confidence 8888776542 22 2478999999999999877
No 59
>cd04694 Nudix_Hydrolase_35 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.47 E-value=4.3e-13 Score=107.85 Aligned_cols=111 Identities=10% Similarity=-0.016 Sum_probs=71.5
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCC-CC--Cce
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMP-DV--PSY 183 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~-~~--~g~ 183 (231)
++.+||++|...+ ...+|.|.||+|+++.||++.+||.||+.||+|+++........+++++.+.++.... +. ...
T Consensus 12 ~~~vLl~rr~~~~-~~~~g~w~~PgG~v~~~E~~~~aa~RE~~EE~gi~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~ 90 (143)
T cd04694 12 DQKLLLTRRASSL-RIFPNVWVPPGGHVELGENLLEAGLRELNEETGLTLDPIDKSWQVLGLWESVYPPLLSRGLPKRHH 90 (143)
T ss_pred CCEEEEEEECCCC-CCCCCeEECcccccCCCCCHHHHHHHHHHHHHCCCccccccceeEEeeeccccccccCCCccccee
Confidence 4579999987321 2357899999999999999999999999999999876421111234444433332100 00 122
Q ss_pred EEEEEEEEEeCC------ccccc-CcccceeeecHHhhcccC
Q 026891 184 KQFFFKSQVIAS------NKFTI-GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 184 kvfff~a~~~~G------~~~~~-~e~~d~~Wvt~eEl~~~~ 218 (231)
.++||.+....+ .+.+. +++++++|++.+++.+++
T Consensus 91 ~~~y~~~~~~~~~~~~~~~~~~~~~Ev~~~~Wv~~~~a~~~~ 132 (143)
T cd04694 91 IVVYILVKSSETHQQLQARLQPDPNEVSAAAWLDKSLAKAVV 132 (143)
T ss_pred EEEEEEEEeccccccccccccCChhhccceEeeCHHHHHHHH
Confidence 344444433322 11221 489999999999999988
No 60
>cd02885 IPP_Isomerase Isopentenyl diphosphate (IPP) isomerase, a member of the Nudix hydrolase superfamily, is a key enzyme in the isoprenoid biosynthetic pathway. Isoprenoids comprise a large family of natural products including sterols, carotenoids, dolichols and prenylated proteins. These compounds are synthesized from two precursors: isopentenyl diphosphate (IPP) and dimethylallyl diphosphate (DMAPP). IPP isomerase catalyzes the interconversion of IPP and DMAPP by a stereoselective antarafacial transposition of hydrogen. The enzyme requires one Mn2+ or Mg2+ ion in its active site to fold into an active conformation and also contains the Nudix motif, a highly conserved 23-residue block (GX5EX7REUXEEXGU, where U = I, L or V), that functions as a metal binding and catalytic site. The metal binding site is present within the active site and plays structural and catalytical roles. IPP isomerase is well represented in several bacteria, archaebacteria and eukaryotes, including fungi, mamm
Probab=99.45 E-value=4.9e-13 Score=109.50 Aligned_cols=107 Identities=12% Similarity=0.086 Sum_probs=71.5
Q ss_pred cEEEEEeccCCCCCCCCCceecC-ceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFP-EKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP-~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
..+||+||.. +.....|.|.+| +|+++.|||+++||.||++||+|+.+.... .. .+.+.|..+...........+
T Consensus 42 ~~iLl~kR~~-~~~~~Pg~w~~~~gG~ie~GEt~~eaa~REl~EEtGl~~~~~~--~~-~~~~~~~~~~~~~~~~~~i~~ 117 (165)
T cd02885 42 GRLLLQRRAL-SKYTFPGLWTNTCCSHPLPGEGVKDAAQRRLREELGITGDLLE--LV-LPRFRYRAPDDGGLVEHEIDH 117 (165)
T ss_pred CcEEEEeccC-CCccCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccchh--hc-cceEEEEEEcCCCceeeEEEE
Confidence 3588888863 212356889997 899999999999999999999999876421 11 133333322111001123457
Q ss_pred EEEEEEeCCcccccCcccceeeecHHhhcccC
Q 026891 187 FFKSQVIASNKFTIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 187 ff~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~ 218 (231)
+|.|....+.....+++.++.|++.+|+.+.+
T Consensus 118 ~f~~~~~~~~~~~~~Ev~~~~w~~~~el~~~~ 149 (165)
T cd02885 118 VFFARADVTLIPNPDEVSEYRWVSLEDLKELV 149 (165)
T ss_pred EEEEEeCCCCCCCccceeEEEEECHHHHHHHH
Confidence 77787654433323588999999999999888
No 61
>PRK15393 NUDIX hydrolase YfcD; Provisional
Probab=99.42 E-value=1.7e-12 Score=108.03 Aligned_cols=109 Identities=15% Similarity=0.115 Sum_probs=70.5
Q ss_pred cEEEEEeccCCCCCCCCCce-ecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 108 RLYLILYGETFGAPGGKPIW-HFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W-~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
..+||.+|...+ ....|.| .||||++++|||+.+||.|||+||+|+..... ..++.+.|..+.. ....+
T Consensus 49 g~iLL~~R~~~~-~~~pg~~~~~pGG~ve~GEs~~eAA~REL~EEtGl~~~~~----~~~~~~~~~~~~~-----~~~~~ 118 (180)
T PRK15393 49 GKILVQRRTETK-DFLPGMLDATAGGVVQAGEQLLESARREAEEELGIAGVPF----AEHGQFYFEDENC-----RVWGA 118 (180)
T ss_pred CeEEEEEeCCCC-CCCCCcccccCCCcCCCCCCHHHHHHHHHHHHHCCCCccc----eeceeEEecCCCc-----eEEEE
Confidence 457888775311 1234555 68999999999999999999999999975321 1234443332211 13345
Q ss_pred EEEEEEeCCccccc-CcccceeeecHHhhcccC----cchHHHHHh
Q 026891 187 FFKSQVIASNKFTI-GKCEDFVWVTKDELMEYF----PESAEFLNK 227 (231)
Q Consensus 187 ff~a~~~~G~~~~~-~e~~d~~Wvt~eEl~~~~----p~~~~~v~~ 227 (231)
+|.|.. .|...+. +++.++.|++.+|+.+.. |.....+..
T Consensus 119 ~f~~~~-~~~~~~~~~E~~~~~W~~~~el~~~~~~~~~~~~~~l~~ 163 (180)
T PRK15393 119 LFSCVS-HGPFALQEEEVSEVCWMTPEEITARCDEFTPDSLKALAL 163 (180)
T ss_pred EEEEEe-CCCCCCChHHeeEEEECCHHHHhhhhhhcCccHHHHHHH
Confidence 676765 4544332 488999999999999763 444444433
No 62
>PRK08999 hypothetical protein; Provisional
Probab=99.41 E-value=3.1e-12 Score=114.50 Aligned_cols=109 Identities=17% Similarity=0.220 Sum_probs=81.5
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
+.+||+||... ...+|.|+||+|+++.|||+.+||.||++||+|..+... .+++.+.+.++.. ...+++
T Consensus 17 ~~vLL~kR~~~--~~~~g~w~~PgG~ve~gE~~~~aa~RE~~EE~Gl~~~~~----~~l~~~~h~~~~~-----~~~i~~ 85 (312)
T PRK08999 17 GRILLARRPEG--KHQGGLWEFPGGKVEPGETVEQALARELQEELGIEVTAA----RPLITVRHDYPDK-----RVRLDV 85 (312)
T ss_pred CeEEEEEecCC--CCCCCeEECCccCCCCCCCHHHHHHHHHHHHhCCceecc----eeEEEEEEEcCCC-----eEEEEE
Confidence 56999988632 235789999999999999999999999999999987642 2244455555543 257788
Q ss_pred EEEEEeCCcccccCcccceeeecHHhhcccC--cchHHHHHhh
Q 026891 188 FKSQVIASNKFTIGKCEDFVWVTKDELMEYF--PESAEFLNKM 228 (231)
Q Consensus 188 f~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~--p~~~~~v~~~ 228 (231)
|.+....+... ..++.++.|++.+|+.++. +....+++.+
T Consensus 86 y~~~~~~~~~~-~~e~~~~~Wv~~~el~~~~~~~~~~~i~~~l 127 (312)
T PRK08999 86 RRVTAWQGEPH-GREGQPLAWVAPDELAVYPFPPANQPIVRAL 127 (312)
T ss_pred EEEEEecCccc-CccCCccEEecHHHcccCCCCcchHHHHHHh
Confidence 88877766543 2367899999999999987 4556666655
No 63
>cd02883 Nudix_Hydrolase Nudix hydrolase is a superfamily of enzymes found in all three kingdoms of life, and it catalyzes the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+ for their activity. Members of this family are recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which forms a structural motif that functions as a metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance and "house-cleaning" enzy
Probab=99.41 E-value=2.6e-12 Score=96.99 Aligned_cols=100 Identities=17% Similarity=0.256 Sum_probs=74.2
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
..+||+++.. . ..|.|.||+|.++.||++.+||.||+.||+|+.+... ...+++.|..+.. ......++
T Consensus 12 ~~ill~kr~~---~-~~~~~~~p~G~~~~~e~~~~~a~RE~~EE~Gl~~~~~----~~~~~~~~~~~~~---~~~~~~~~ 80 (123)
T cd02883 12 GRVLLVRRAD---S-PGGLWELPGGGVEPGETLEEAAIREVREETGLDVDVL----RLLGVYEVESPDE---GEHAVVFV 80 (123)
T ss_pred CCEEEEEEcC---C-CCCeEeCCcccccCCCCHHHHHHHHHHHhhCccceee----eEEEEEEeeccCC---CceEEEEE
Confidence 4588888762 1 3689999999999999999999999999999977532 1233444433221 23478899
Q ss_pred EEEEEeCCcc--cccCcccceeeecHHhhcccC
Q 026891 188 FKSQVIASNK--FTIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 188 f~a~~~~G~~--~~~~e~~d~~Wvt~eEl~~~~ 218 (231)
|.|....+.. ....++.++.|++.+++.++.
T Consensus 81 ~~~~~~~~~~~~~~~~e~~~~~w~~~~~l~~~~ 113 (123)
T cd02883 81 FLARLVGGEPTLLPPDEISEVRWVTLDELPALA 113 (123)
T ss_pred EEEEeCCCCcCCCCCCccceEEEEcHHHCcccc
Confidence 9998877655 223477899999999999876
No 64
>cd04685 Nudix_Hydrolase_26 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.38 E-value=3.5e-12 Score=101.28 Aligned_cols=102 Identities=19% Similarity=0.181 Sum_probs=68.6
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCe-eEEEecccceEEE--EecCCCCCCCCCceE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLS-HTYFVGNAPMGHM--VMQPAEKMPDVPSYK 184 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i-~v~~vg~~P~g~~--~y~~~~~~~~~~g~k 184 (231)
+.+||+++.. +.....+.|.+|+|.++.|||+.+||.||++||+|..+ .+. . .+... .|.+... .....
T Consensus 12 g~vLl~r~~~-~~~~~~~~w~~PgG~ve~gE~~~~a~~Re~~EE~G~~~~~~~---~-~~~~~~~~f~~~~~---~~~~~ 83 (133)
T cd04685 12 DRVLLLRGDD-PDSPGPDWWFTPGGGVEPGESPEQAARRELREETGITVADLG---P-PVWRRDAAFTFLGV---DGRQE 83 (133)
T ss_pred CeEEEEEEeC-CCCCCCCEEECCcCCCCCCCCHHHHHHHHHHHHHCCcccccc---c-eEEEEEEEEEecCc---cceee
Confidence 4588887652 10014678999999999999999999999999999987 321 1 11111 1322221 12245
Q ss_pred EEEEEEEEeCCccccc-------CcccceeeecHHhhccc
Q 026891 185 QFFFKSQVIASNKFTI-------GKCEDFVWVTKDELMEY 217 (231)
Q Consensus 185 vfff~a~~~~G~~~~~-------~e~~d~~Wvt~eEl~~~ 217 (231)
.+||.|+..++..... .++.+++|++.+||.+.
T Consensus 84 ~~~f~~~~~~~~~~~~~~~~~E~~~~~~~~W~~~~el~~~ 123 (133)
T cd04685 84 ERFFLARTPRTEPSPAGWTALERRSILGWRWWTRAELAAT 123 (133)
T ss_pred EEEEEEEcCCccccCCCCChhhhhhcccccCCCHHHHhhC
Confidence 7899998775443211 24568999999999885
No 65
>cd04662 Nudix_Hydrolase_5 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.35 E-value=1.1e-11 Score=97.71 Aligned_cols=100 Identities=15% Similarity=0.130 Sum_probs=66.0
Q ss_pred cEEEEEeccCCC-CCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCC--------CCCC
Q 026891 108 RLYLILYGETFG-APGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPA--------EKMP 178 (231)
Q Consensus 108 ~l~LLVkr~~~g-~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~--------~~~~ 178 (231)
-.+||+++...- ..+..+.|+||+|+++.|||+.+||.||+.||+|+++....+ .++.+.+... ....
T Consensus 15 ~~vlL~~~~~~~~~~~~~~~W~lPgG~ie~~E~~~~aA~REl~EEtGl~~~~~~~---~l~~~~~~~~~~v~~fl~~~~~ 91 (126)
T cd04662 15 IEVLLVHPGGPFWANKDLGAWSIPKGEYTEGEDPLLAAKREFSEETGFCVDGPFI---DLGSLKQSGGKVVHAWAVEADL 91 (126)
T ss_pred EEEEEEEccCccccCCCCCEEECCcccCCCCcCHHHHHHHHHHHHhCCcceeeEE---eEEEEECCCCeEEEEEEEEecC
Confidence 368888752100 002467899999999999999999999999999998653221 1221111110 0000
Q ss_pred CCCceEEEEEEEEEeCCcccc--cCcccceeeec
Q 026891 179 DVPSYKQFFFKSQVIASNKFT--IGKCEDFVWVT 210 (231)
Q Consensus 179 ~~~g~kvfff~a~~~~G~~~~--~~e~~d~~Wvt 210 (231)
+......++|.+...+|++.. .++.++++|++
T Consensus 92 d~~~~~~~~f~~~~~~~~~~~~~~~e~~~~~w~~ 125 (126)
T cd04662 92 DITDIKSNTFEMEWPKGSGKMRKFPEVDRAGWFD 125 (126)
T ss_pred ChhHeEEEEEEEEccCCCCccccCCccceeEeec
Confidence 123467888999888877655 36899999997
No 66
>PRK03759 isopentenyl-diphosphate delta-isomerase; Provisional
Probab=99.35 E-value=5.6e-12 Score=105.18 Aligned_cols=106 Identities=14% Similarity=0.087 Sum_probs=69.5
Q ss_pred cEEEEEeccCCCCCCCCCceecC-ceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFP-EKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP-~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
..+||++|.. +.....|.|.+| +|+++.|||+.+||.||+.||+|+++.... ...+.+.|..............+
T Consensus 46 g~vLL~rR~~-~~~~~PG~w~~~~gG~ve~GEt~~~aa~REl~EEtGl~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 121 (184)
T PRK03759 46 GRLLVTRRAL-SKKTWPGVWTNSCCGHPQPGESLEDAVIRRCREELGVEITDLE---LVLPDFRYRATDPNGIVENEVCP 121 (184)
T ss_pred CeEEEEEccC-CCCCCCCcccccccCCCCCCCCHHHHHHHHHHHHhCCCccccc---cccceEEEEEecCCCceeeEEEE
Confidence 4588888752 211235677776 799999999999999999999999875211 11223333221111001123456
Q ss_pred EEEEEEeCCccccc-CcccceeeecHHhhcccC
Q 026891 187 FFKSQVIASNKFTI-GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 187 ff~a~~~~G~~~~~-~e~~d~~Wvt~eEl~~~~ 218 (231)
+|.|... |.+.+. +++.++.|++.+|+.+.+
T Consensus 122 vf~~~~~-~~~~~~~~Ev~~~~W~~~~el~~~i 153 (184)
T PRK03759 122 VFAARVT-SALQPNPDEVMDYQWVDPADLLRAV 153 (184)
T ss_pred EEEEEEC-CCCCCChhHeeeEEEECHHHHHHHH
Confidence 7888776 444443 478999999999998887
No 67
>PRK11762 nudE adenosine nucleotide hydrolase NudE; Provisional
Probab=99.34 E-value=1e-11 Score=103.70 Aligned_cols=101 Identities=13% Similarity=0.087 Sum_probs=70.3
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
+..+|||++-+.| .....|+||+|.+++|||+++||.||++||+|..+..+- +++.+.+. +. .....++
T Consensus 58 ~~~vlLvrq~r~~--~~~~~~elPaG~ve~gE~~~~aA~REl~EEtG~~~~~l~----~l~~~~~~-~~----~~~~~~~ 126 (185)
T PRK11762 58 DDTLLLIREYAAG--TERYELGFPKGLIDPGETPLEAANRELKEEVGFGARQLT----FLKELSLA-PS----YFSSKMN 126 (185)
T ss_pred CCEEEEEEeecCC--CCCcEEEccceeCCCCCCHHHHHHHHHHHHHCCCCcceE----EEEEEecC-CC----ccCcEEE
Confidence 3468888875433 245679999999999999999999999999999876542 34433222 21 1235677
Q ss_pred EEEEEEeCCccccc--CcccceeeecHHhhcccC
Q 026891 187 FFKSQVIASNKFTI--GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 187 ff~a~~~~G~~~~~--~e~~d~~Wvt~eEl~~~~ 218 (231)
+|.|....+..... .+..+..|++.+|+.+.+
T Consensus 127 ~f~a~~~~~~~~~~~e~E~i~~~~~~~~e~~~~~ 160 (185)
T PRK11762 127 IVLAEDLYPERLEGDEPEPLEVVRWPLADLDELL 160 (185)
T ss_pred EEEEEccccccCCCCCCceeEEEEEcHHHHHHHH
Confidence 77777654432211 245688999999998877
No 68
>TIGR02150 IPP_isom_1 isopentenyl-diphosphate delta-isomerase, type 1. This model represents type 1 of two non-homologous families of the enzyme isopentenyl-diphosphate delta-isomerase (IPP isomerase). IPP is an essential building block for many compounds, including enzyme cofactors, sterols, and prenyl groups. This inzyme interconverts isopentenyl diphosphate and dimethylallyl diphosphate.
Probab=99.31 E-value=1.1e-11 Score=101.10 Aligned_cols=103 Identities=15% Similarity=0.032 Sum_probs=68.7
Q ss_pred cEEEEEeccCCCCCCCCCceecC-ceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFP-EKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP-~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
..+||+||.. +.....|.|.+| +|+++.|| .+||.||++||+|+++...-+.....-.+.+.++.. .....+
T Consensus 39 g~vLl~kR~~-~k~~~PG~W~~~~gG~v~~GE--~eaa~REl~EE~Gl~~~~~~l~~~~~~~~~~~~~~g----~~~~~~ 111 (158)
T TIGR02150 39 GQLLLQRRAL-SKITWPGVWTNSCCSHPLPGE--LEAAIRRLREELGIPADDVPLTVLPRFSYRARDAWG----EHELCP 111 (158)
T ss_pred CeEEEEeccC-CCcCCCCCccccccCCCCccc--HHHHHHHHHHHHCCCccccceEEcceEEEEEecCCC----cEEEEE
Confidence 4588888763 212356899997 79999999 399999999999998764211111111222222211 124567
Q ss_pred EEEEEEeCCcccccC-cccceeeecHHhhcccC
Q 026891 187 FFKSQVIASNKFTIG-KCEDFVWVTKDELMEYF 218 (231)
Q Consensus 187 ff~a~~~~G~~~~~~-e~~d~~Wvt~eEl~~~~ 218 (231)
+|.|.... .+.++. |+.++.|++.+||..++
T Consensus 112 ~f~~~~~~-~~~~~~~Ev~~~~W~~~~el~~~~ 143 (158)
T TIGR02150 112 VFFARAPV-PLNPNPEEVAEYRWVSLEELKEIL 143 (158)
T ss_pred EEEEecCC-cccCChhHeeeEEEeCHHHHHHHH
Confidence 77777653 444443 89999999999999988
No 69
>cd04674 Nudix_Hydrolase_16 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate
Probab=99.27 E-value=5.3e-11 Score=92.91 Aligned_cols=91 Identities=13% Similarity=0.066 Sum_probs=61.5
Q ss_pred EEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEEEE
Q 026891 110 YLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFFK 189 (231)
Q Consensus 110 ~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff~ 189 (231)
+||++|.. .+..|.|.||+|+++.|||+++||.||+.||+|+++....++ .+. .|..+.. ...+|+|.
T Consensus 17 ~lL~~r~~---~~~~~~w~lPgG~ve~~E~~~~aa~REl~EE~g~~~~~~~l~--~~~--~~~~~~~-----~~~~~~~~ 84 (118)
T cd04674 17 LLVIRRGI---EPGRGKLALPGGFIELGETWQDAVARELLEETGVAVDPADIR--LFD--VRSAPDG-----TLLVFGLL 84 (118)
T ss_pred EEEEEeec---CCCCCeEECCceecCCCCCHHHHHHHHHHHHHCCcccccEEE--EEE--EEecCCC-----eEEEEEEE
Confidence 45555542 235689999999999999999999999999999987643222 122 2333322 36778888
Q ss_pred EEEeCCcc-cc--cCcccceeeecHH
Q 026891 190 SQVIASNK-FT--IGKCEDFVWVTKD 212 (231)
Q Consensus 190 a~~~~G~~-~~--~~e~~d~~Wvt~e 212 (231)
+....+.. .. ..+..++.|++..
T Consensus 85 ~~~~~~~~~~~~~~~E~~~~~~~~~~ 110 (118)
T cd04674 85 PERRAADLPPFEPTDETTERAVVTAP 110 (118)
T ss_pred eccccccCCCCCCCcceeeEEEccCC
Confidence 87766553 22 2367788887644
No 70
>cd04665 Nudix_Hydrolase_8 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belonging to this superfamily require a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate s
Probab=99.27 E-value=3.8e-11 Score=93.64 Aligned_cols=93 Identities=12% Similarity=0.150 Sum_probs=67.7
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
++.+||++++ .+.|+||+|+++.||++.+||.||+.||+|..+... .+++.+.+..... +....
T Consensus 10 ~~~vLl~~~~-------~~~w~lPgG~ve~gE~~~~aa~REl~EE~G~~~~~~----~~l~~~~~~~~~~-----~~~~~ 73 (118)
T cd04665 10 DDGLLLVRHK-------DRGWEFPGGHVEPGETIEEAARREVWEETGAELGSL----TLVGYYQVDLFES-----GFETL 73 (118)
T ss_pred CCEEEEEEeC-------CCEEECCccccCCCCCHHHHHHHHHHHHHCCccCce----EEEEEEEecCCCC-----cEEEE
Confidence 4578888864 357999999999999999999999999999977432 3455555443221 24556
Q ss_pred EEEEEEeCCccc-ccCcccceeeecHHhhc
Q 026891 187 FFKSQVIASNKF-TIGKCEDFVWVTKDELM 215 (231)
Q Consensus 187 ff~a~~~~G~~~-~~~e~~d~~Wvt~eEl~ 215 (231)
+|.|.+..+... ...++....|++.+-..
T Consensus 74 ~y~a~~~~~~~~~~~~E~~~~~~~~~~~~~ 103 (118)
T cd04665 74 VYPAVSAQLEEKASYLETDGPVLFKNEPEE 103 (118)
T ss_pred EEEEEEEecccccccccccCcEEeccCCcc
Confidence 677777766543 44588999999876554
No 71
>cd03670 ADPRase_NUDT9 ADP-ribose pyrophosphatase (ADPRase) catalyzes the hydrolysis of ADP-ribose to AMP and ribose-5-P. Like other members of the Nudix hydrolase superfamily of enzymes, it is thought to require a divalent cation, such as Mg2+, for its activity. It also contains a 23-residue Nudix motif (GX5EX7REUXEEXGU, where U = I, L or V) which functions as a metal binding site/catalytic site. In addition to the Nudix motif, there are additional conserved amino acid residues, distal from the signature sequence, that correlate with substrate specificity. In humans, there are four distinct ADPRase activities, three putative cytosolic (ADPRase-I, -II, and -Mn) and a single mitochondrial enzyme (ADPRase-m). ADPRase-m is also known as NUDT9. It can be distinugished from the cytosolic ADPRase by a N-terminal target sequence unique to mitochondrial ADPRase. NUDT9 functions as a monomer.
Probab=99.22 E-value=7.2e-11 Score=98.97 Aligned_cols=145 Identities=10% Similarity=0.099 Sum_probs=82.8
Q ss_pred ccCCCCCCCCCCc--ccccCCCcchhhhcCCc-EEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCC
Q 026891 79 YQMEYVPAPRITE--TDKTNDRKSLQRALDRR-LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDL 155 (231)
Q Consensus 79 ~~~~~~p~~r~T~--aD~~~d~~Sl~R~L~~~-l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~ 155 (231)
|..+....+-+|- -|..++.-.+.+..++. .+|+++|+ ..|.|.||||.+++|||+.+||.|||.||+|++
T Consensus 17 wg~n~~~~~~vtr~~~~~~~~~~i~~~~~~~~l~vLl~~r~------~~g~walPGG~v~~~E~~~~aa~Rel~EEt~l~ 90 (186)
T cd03670 17 WGPNHAADPIVTRWKRDSSGDGSIHPKSGKPILQFVAIKRP------DSGEWAIPGGMVDPGEKISATLKREFGEEALNS 90 (186)
T ss_pred cCCchhcCEEEEEEEEcCCCCEEEEecCCCCeeEEEEEEeC------CCCcCcCCeeeccCCCCHHHHHHHHHHHHHccc
Confidence 3344444455553 23334444444443333 68889886 358899999999999999999999999999765
Q ss_pred eeEEEe------------cccceEEEEecCCCCCC-C--CCceEEEEEEEE---EeC-CcccccCcccceeeecHHhhcc
Q 026891 156 SHTYFV------------GNAPMGHMVMQPAEKMP-D--VPSYKQFFFKSQ---VIA-SNKFTIGKCEDFVWVTKDELME 216 (231)
Q Consensus 156 i~v~~v------------g~~P~g~~~y~~~~~~~-~--~~g~kvfff~a~---~~~-G~~~~~~e~~d~~Wvt~eEl~~ 216 (231)
+..... ....+++|.....+... + -+....++|.+. .++ ..+...++..+.+|++.+++..
T Consensus 91 l~~~~~~~~~l~~l~~~~~~~~~~vy~~~~~dpr~td~~w~~Tva~~f~~~~~~~~~~~~~~a~dda~~a~W~~v~~l~~ 170 (186)
T cd03670 91 LQKSDEEKEEIKKLVELFSKDGVEVYKGYVDDPRNTDNAWMETVAVNFHDEDGNDVENLPLEAGDDAGSVRWQDIDSKLP 170 (186)
T ss_pred ccccchhhhhhcchhhhhcccccEEEeccccCCCCCCcceEEEEEEEEEecCcccccccccCCCCchheeEEEEcccccc
Confidence 432110 00112232211111110 0 112334444442 111 1222234788999999999986
Q ss_pred cCcchHHHHHhhh
Q 026891 217 YFPESAEFLNKMI 229 (231)
Q Consensus 217 ~~p~~~~~v~~~l 229 (231)
+.....++|++++
T Consensus 171 L~~dH~~Il~~a~ 183 (186)
T cd03670 171 LYANHSQFLKKVA 183 (186)
T ss_pred cccCHHHHHHHHH
Confidence 5555567777764
No 72
>TIGR02705 nudix_YtkD nucleoside triphosphatase YtkD. The functional assignment to the proteins of this family is contentious. Reference challenges the findings of reference, both in interpretation and in enzyme assay results. This protein belongs to the nudix family and shares some sequence identity with E. coli MutT but appears not to be functionally interchangeable with it.
Probab=99.21 E-value=1.4e-10 Score=94.70 Aligned_cols=93 Identities=13% Similarity=0.134 Sum_probs=67.9
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
..+||+++. ...|+||+|++++|||+++||.||+.||+|..+..+ .++|.+....+. ......+
T Consensus 35 ~~~LL~~~~-------~~~~elPgG~vE~gEt~~eaA~REl~EETG~~~~~~----~~lg~~~~~~~~-----~~~~~~v 98 (156)
T TIGR02705 35 DQWLLTEHK-------RRGLEFPGGKVEPGETSKEAAIREVMEETGAIVKEL----HYIGQYEVEGES-----TDFVKDV 98 (156)
T ss_pred CEEEEEEEc-------CCcEECCceecCCCCCHHHHHHHHHHHHhCcEeeee----EEEEEEEecCCC-----cEEEEEE
Confidence 358888764 235999999999999999999999999999976543 245555433221 1356778
Q ss_pred EEEEEeCCcccccCccccee-eecHHhhcccC
Q 026891 188 FKSQVIASNKFTIGKCEDFV-WVTKDELMEYF 218 (231)
Q Consensus 188 f~a~~~~G~~~~~~e~~d~~-Wvt~eEl~~~~ 218 (231)
|.|....+... ++..+.. +++.+|+.+.+
T Consensus 99 f~A~~~~~~~~--~e~~E~~~~~~~~~~~~~~ 128 (156)
T TIGR02705 99 YFAEVSALESK--DDYLETKGPVLLQEIPDII 128 (156)
T ss_pred EEEEEeccccC--CCceeeEeEEEHHHHHHHH
Confidence 88988866533 4556666 79999997766
No 73
>cd03676 Nudix_hydrolase_3 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+, for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V), which functions as a metal binding and catalytic site. Substrates of nudix hydrolases include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate spe
Probab=99.20 E-value=7e-11 Score=97.96 Aligned_cols=109 Identities=10% Similarity=0.031 Sum_probs=70.7
Q ss_pred cEEEEEeccCCCCCCCCCce-ecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 108 RLYLILYGETFGAPGGKPIW-HFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W-~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
..+||-||.. ......|.| .+|+|+++.|||+.+||.||+.||+|+++...-. -.++|.+.|.+...........++
T Consensus 48 ~~l~lqrRs~-~K~~~Pg~wd~~~~G~v~~gE~~~~aA~REl~EE~Gl~~~~~~~-l~~~g~~~~~~~~~~~~~~~e~~~ 125 (180)
T cd03676 48 LRIWIPRRSP-TKATWPGMLDNLVAGGLGHGEGPEETLVKECDEEAGLPEDLVRQ-LKPVGVVSYLREGEAGGLQPEVEY 125 (180)
T ss_pred eEEEEEeccC-CCCCCCCceeeecccCCCCCCCHHHHHHHHHHHHhCCCHHHHhh-ceeccEEEEEEEcCCCcEeeeEEE
Confidence 4566666652 323467899 6999999999999999999999999997653110 012333333332010011124577
Q ss_pred EEEEEEeCC-ccccc-CcccceeeecHHhhcccC
Q 026891 187 FFKSQVIAS-NKFTI-GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 187 ff~a~~~~G-~~~~~-~e~~d~~Wvt~eEl~~~~ 218 (231)
+|.+.+-.+ .+.++ +|+.++.|++.+|+.+.+
T Consensus 126 ~f~~~~~~~~~~~~~~~Ev~~~~~~~~~el~~~l 159 (180)
T cd03676 126 VYDLELPPDFIPAPQDGEVESFRLLTIDEVLRAL 159 (180)
T ss_pred EEEEEcCCCCeeCCCCCcEeEEEEECHHHHHHHH
Confidence 787775322 22333 479999999999998876
No 74
>TIGR00052 nudix-type nucleoside diphosphatase, YffH/AdpP family.
Probab=99.17 E-value=1.2e-10 Score=97.59 Aligned_cols=104 Identities=8% Similarity=0.007 Sum_probs=71.3
Q ss_pred CCcEEEEEeccCCCC---CCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCc
Q 026891 106 DRRLYLILYGETFGA---PGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPS 182 (231)
Q Consensus 106 ~~~l~LLVkr~~~g~---~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g 182 (231)
++..+|||++-+.+. ......|+||+|+++.|||+++||.|||.||||..+.... +++.+ |..+. ...
T Consensus 55 ~~~~vlLvrq~R~~~~~~~~~~~~lelPaG~ve~gE~~~~aA~REl~EEtG~~~~~~~----~~~~~-~~~~g----~~~ 125 (185)
T TIGR00052 55 KKDTVVLIEQFRIAAYVNGEEPWLLELSAGMVEKGESPEDVARREAIEEAGYQVKNLR----KLLSF-YSSPG----GVT 125 (185)
T ss_pred CCCEEEEEECceeeeeecCCcceEEEECcEecCCCCCHHHHHHHHccccccceecceE----EEEEE-EcCCC----CCc
Confidence 345788988753220 0134679999999999999999999999999999875431 23322 22222 224
Q ss_pred eEEEEEEEEEeCCccc-----ccCcccceeeecHHhhcccC
Q 026891 183 YKQFFFKSQVIASNKF-----TIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 183 ~kvfff~a~~~~G~~~-----~~~e~~d~~Wvt~eEl~~~~ 218 (231)
..+++|.|.+.++... ..++..+..|++.+|+.+.+
T Consensus 126 ~~~~~f~a~~~~~~~~~~~~~~~~E~ie~~~~~~~e~~~~~ 166 (185)
T TIGR00052 126 ELIHLFIAEVDDNQAAGIGGGADEEEIEVLHLVFSQALQWI 166 (185)
T ss_pred EEEEEEEEEEchhhcCCCCCCCCccceEEEEeCHHHHHHHH
Confidence 6788999987654221 11245678999999999887
No 75
>cd04663 Nudix_Hydrolase_6 Members of the Nudix hydrolase superfamily catalyze the hydrolysis of NUcleoside DIphosphates linked to other moieties, X. Enzymes belong to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity and contain a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, U=I, L or V) which functions as metal binding and catalytic site. Substrates of nudix hydrolase include intact and oxidatively damaged nucleoside triphosphates, dinucleoside polyphosphates, nucleotide-sugars and dinucleotide enzymes. These substrates are metabolites or cell signaling molecules that require regulation during different stages of the cell cycle or during periods of stress. In general, the role of the nudix hydrolase is to sanitize the nucleotide pools and to maintain cell viability, thereby serving as surveillance & "house-cleaning" enzymes. Substrate specificity is used to define families within the superfamily. Differences in substrate specificity are
Probab=99.16 E-value=1.8e-10 Score=90.89 Aligned_cols=42 Identities=19% Similarity=0.063 Sum_probs=35.4
Q ss_pred EEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCee
Q 026891 109 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSH 157 (231)
Q Consensus 109 l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~ 157 (231)
.+|+++.+ .+.|+||||++++|||+.+||.||++||+|+.+.
T Consensus 15 ~ll~~r~~-------~~~~~lPgG~ve~~E~~~~aa~Rel~EEtGl~~~ 56 (126)
T cd04663 15 ELLVFEHP-------LAGFQIVKGTVEPGETPEAAALRELQEESGLPSF 56 (126)
T ss_pred EEEEEEcC-------CCcEECCCccCCCCCCHHHHHHHHHHHHHCCeee
Confidence 55666543 2459999999999999999999999999999863
No 76
>PRK10707 putative NUDIX hydrolase; Provisional
Probab=99.11 E-value=9.3e-10 Score=92.57 Aligned_cols=101 Identities=10% Similarity=-0.059 Sum_probs=65.6
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCC-CCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESE-ESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~g-Etl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
..+|+++|.... ....|.|+||||++++| |++.+||.||+.||+|+....+- .+|.+...++. .|..+.
T Consensus 44 ~~vLl~~R~~~~-r~~~G~~~~PGG~~e~~de~~~~tA~REl~EEtGl~~~~~~----~lg~l~~~~~~-----~~~~~~ 113 (190)
T PRK10707 44 PTLLLTQRSIHL-RKHAGQVAFPGGAVDPTDASLIATALREAQEEVAIPPSAVE----VIGVLPPVDSS-----TGYQVT 113 (190)
T ss_pred CEEEEEEeCCcc-cCCCCcEEcCCcccCCCcccHHHHHHHHHHHHHCCCccceE----EEEEeeeeecc-----CCcEEE
Confidence 367888865321 23568999999999975 78999999999999999765432 12322211111 134555
Q ss_pred EEEEEEeCCc-cccc-CcccceeeecHHhhcccC
Q 026891 187 FFKSQVIASN-KFTI-GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 187 ff~a~~~~G~-~~~~-~e~~d~~Wvt~eEl~~~~ 218 (231)
.|.+.+..+. .... +|+.+..|++.+++.+..
T Consensus 114 ~~v~~~~~~~~~~~d~~Ev~~v~~vpl~e~~~~~ 147 (190)
T PRK10707 114 PVVGIIPPDLPYRANEDEVAAVFEMPLAEALHLG 147 (190)
T ss_pred EEEEEECCCCCCCCChhhhheEEEEeHHHHhCcc
Confidence 5555554322 2222 378889999999987653
No 77
>cd03431 DNA_Glycosylase_C DNA glycosylase (MutY in bacteria and hMYH in humans) is responsible for repairing misread A*oxoG residues to C*G by removing the inappropriately paired adenine base from the DNA backbone. It belongs to the Nudix hydrolase superfamily and is important for the repair of various genotoxic lesions. Enzymes belonging to this superfamily requires a divalent cation, such as Mg2+ or Mn2+ for their activity. They are also recognized by a highly conserved 23-residue nudix motif (GX5EX7REUXEEXGU, where U = I, L or V). However, DNA glycosylase does not seem to contain this signature motif. DNA glycosylase consists of 2 domains: the N-terminal domain contains the catalytic properties of the enzyme and the C-terminal domain affects substrate (oxoG) binding and enzymatic turnover. The C-terminal domain is highly similar to MutT, based on secondary structure and topology, despite low sequence identity. MutT sanitizes the nucleotide precursor pool by hydrolyzing oxo-dGTP to
Probab=99.08 E-value=1.9e-09 Score=81.84 Aligned_cols=96 Identities=20% Similarity=0.233 Sum_probs=72.6
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
++.+||.||+..| -.+|.|+||+++++.+|+..++..+++.++.+. . ..+++.++|.++.. ...+.
T Consensus 13 ~~~~ll~kR~~~g--l~~glwefP~~~~~~~~~~~~~~~~~~~~~~~~--~-----~~~~~~~~H~fth~-----~~~~~ 78 (118)
T cd03431 13 DGRVLLEKRPEKG--LLAGLWEFPSVEWEEEADGEEALLSALKKALRL--S-----LEPLGTVKHTFTHF-----RLTLH 78 (118)
T ss_pred CCeEEEEECCCCC--CCCcceeCCCccccCCcCHHHHHHHHHHHHhCc--c-----cccceeEEEecCCe-----EEEEE
Confidence 3579999997422 468899999999999999999999999888764 1 12345667766653 36788
Q ss_pred EEEEEEeCCcccccCcccceeeecHHhhcccC-cc
Q 026891 187 FFKSQVIASNKFTIGKCEDFVWVTKDELMEYF-PE 220 (231)
Q Consensus 187 ff~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~-p~ 220 (231)
+|.|....|. .+..++.|++.+|+.++- |.
T Consensus 79 ~~~~~~~~~~----~~~~~~~W~~~eel~~~~~p~ 109 (118)
T cd03431 79 VYLARLEGDL----LAPDEGRWVPLEELDEYALPT 109 (118)
T ss_pred EEEEEEeCCC----cCccccEEccHHHHhhCCCCH
Confidence 8988887653 235689999999999987 53
No 78
>PRK10729 nudF ADP-ribose pyrophosphatase NudF; Provisional
Probab=99.05 E-value=2.1e-09 Score=91.22 Aligned_cols=101 Identities=10% Similarity=0.027 Sum_probs=67.8
Q ss_pred cEEEEEeccCCCCCC----CCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCce
Q 026891 108 RLYLILYGETFGAPG----GKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSY 183 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~----~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~ 183 (231)
..+|||++-+++ .. ..-.|+||+|.+++||++.+||.|||.||||..+..+ .+++.+ |..+. ....
T Consensus 62 ~~vlLvrQyR~~-~~~~~~~~~~lE~PAG~vd~gE~p~~aA~REL~EETGy~a~~~----~~l~~~-~~spg----~~~e 131 (202)
T PRK10729 62 DEVVLIEQIRIA-AYDTSETPWLLEMVAGMIEEGESVEDVARREAIEEAGLIVGRT----KPVLSY-LASPG----GTSE 131 (202)
T ss_pred CEEEEEEeeecc-cccCCCCCeEEEccceEcCCCCCHHHHHHHHHHHHhCceeeEE----EEEEEE-EcCCC----cCce
Confidence 357777765433 11 1246999999999999999999999999999987653 234333 22222 2246
Q ss_pred EEEEEEEEEeC----Cc-cccc-CcccceeeecHHhhcccC
Q 026891 184 KQFFFKSQVIA----SN-KFTI-GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 184 kvfff~a~~~~----G~-~~~~-~e~~d~~Wvt~eEl~~~~ 218 (231)
.+++|.|.... +. .... .|..+..|++.+|+.+.+
T Consensus 132 ~~~~fla~~~~~~~~~~~~~~de~E~i~v~~~~~~e~~~~~ 172 (202)
T PRK10729 132 RSSIMVGEVDATTASGIHGLADENEDIRVHVVSREQAYQWV 172 (202)
T ss_pred EEEEEEEEEcchhcccCCCCCCCCCceEEEEEcHHHHHHHH
Confidence 88999888521 11 1111 244578999999999877
No 79
>PLN02709 nudix hydrolase
Probab=98.98 E-value=4.8e-09 Score=90.10 Aligned_cols=99 Identities=6% Similarity=-0.092 Sum_probs=69.0
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCC-CCHHHHHHHHHHHHhCCCee-EEEecccceEEEEecCCCCCCCCCceEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESE-ESLRKCAECALQSVLGDLSH-TYFVGNAPMGHMVMQPAEKMPDVPSYKQ 185 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~g-Etl~qaA~Rel~Ee~G~~i~-v~~vg~~P~g~~~y~~~~~~~~~~g~kv 185 (231)
..+|+++|...- ....|.|.||||++++| +++.+||.||+.||+|+... +..+|..+. + +. ..|..|
T Consensus 51 ~~vLl~~Rs~~l-~~h~GqiafPGG~~e~~D~~~~~tAlRE~~EEiGl~~~~v~vlg~L~~--~---~t-----~sg~~V 119 (222)
T PLN02709 51 LRVILTKRSSTL-SSHPGEVALPGGKRDEEDKDDIATALREAREEIGLDPSLVTIISVLEP--F---VN-----KKGMSV 119 (222)
T ss_pred eEEEEEEcCCCC-CCCCCCccCCCcccCCCCCCHHHHHHHHHHHHHCCCchheEEeeecCC--e---EC-----CCCCEE
Confidence 358888886321 24789999999999997 57999999999999999764 334443221 1 11 124677
Q ss_pred EEEEEEEeC---Cccccc-CcccceeeecHHhhccc
Q 026891 186 FFFKSQVIA---SNKFTI-GKCEDFVWVTKDELMEY 217 (231)
Q Consensus 186 fff~a~~~~---G~~~~~-~e~~d~~Wvt~eEl~~~ 217 (231)
.-|.+.+-. ..+.++ +|+.+.-||+.+++.+-
T Consensus 120 ~P~V~~~~~~~~~~~~~np~EV~~vf~vPL~~ll~~ 155 (222)
T PLN02709 120 APVIGFLHDKKAFKPLPNPAEVEEIFDVPLEMFLKD 155 (222)
T ss_pred EEEEEEecCCCCccccCChhhhheeEEecHHHHhCC
Confidence 888777643 122233 48999999999998653
No 80
>COG0494 MutT NTP pyrophosphohydrolases including oxidative damage repair enzymes [DNA replication, recombination, and repair / General function prediction only]
Probab=98.90 E-value=1.2e-08 Score=78.22 Aligned_cols=104 Identities=21% Similarity=0.257 Sum_probs=62.1
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHH-HHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRK-CAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~q-aA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
..+|++++.. ..+.|.||||+++.||++.+ ||.||+.||+|+.+... ....++.+.................
T Consensus 24 ~~vl~~~~~~-----~~~~~~~PgG~ve~~e~~~~~aa~RE~~EEtGl~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (161)
T COG0494 24 GEVLLAQRRD-----DGGLWELPGGKVEPGEELPEEAAARELEEETGLRVKDE--RLELLGEFPPSPGDGSSVGGREHRV 96 (161)
T ss_pred CEEeEEEccc-----cCCceecCCcccCCCCchHHHHHHHHHHHHhCCeeeee--cceeeeeccCcccCcccccceEEEE
Confidence 6788888762 12589999999999999988 99999999999987730 1122333322111110000012222
Q ss_pred EEEEEE---eCCcccc----cCcccceeeecHHhhcccC
Q 026891 187 FFKSQV---IASNKFT----IGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 187 ff~a~~---~~G~~~~----~~e~~d~~Wvt~eEl~~~~ 218 (231)
++.+.. ....... ..++.++.|+...++....
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~ 135 (161)
T COG0494 97 FFVAEVDDSLAVAIEGLSAPSEELEDLEWVPLDELAALV 135 (161)
T ss_pred EEeeeccccccccccccCCCcchhhceeeeeHHHccccc
Confidence 222221 1111111 1367899999999998887
No 81
>KOG2839 consensus Diadenosine and diphosphoinositol polyphosphate phosphohydrolase [Signal transduction mechanisms]
Probab=98.85 E-value=7.4e-09 Score=82.56 Aligned_cols=100 Identities=14% Similarity=0.139 Sum_probs=64.3
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFF 187 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvff 187 (231)
--||||.... ....|.||+|+||++|+..+||.||..||.|+.-.. +..+.|+..+....... . .+.+.
T Consensus 24 ieVLlvsSs~-----~~~~wi~PKGGwE~dE~~~eAA~REt~EEAGv~G~l---~~~~~g~~~~~~~~~~~-~--~k~~~ 92 (145)
T KOG2839|consen 24 IEVLLVSSSK-----KPHRWIVPKGGWEPDESVEEAALRETWEEAGVKGKL---GRLLGGFEDFLSKKHRT-K--PKGVM 92 (145)
T ss_pred eEEEEEecCC-----CCCCccCCCCCCCCCCCHHHHHHHHHHHHhCceeee---eccccchhhccChhhcc-c--cccee
Confidence 3799998642 346799999999999999999999999999985543 23345555444333221 1 22223
Q ss_pred EEEEEe---CCcccccCcccceeeecHHhhcccC
Q 026891 188 FKSQVI---ASNKFTIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 188 f~a~~~---~G~~~~~~e~~d~~Wvt~eEl~~~~ 218 (231)
|.-... .--+....++....|++.+|..+..
T Consensus 93 ~~l~v~e~le~wp~~~~~~r~r~W~~ledA~~~~ 126 (145)
T KOG2839|consen 93 YVLAVTEELEDWPESEHEFREREWLKLEDAIELC 126 (145)
T ss_pred ehhhhhhhcccChhhhcccceeEEeeHHHHHHHH
Confidence 322111 1112222357899999999987665
No 82
>PRK15009 GDP-mannose pyrophosphatase NudK; Provisional
Probab=98.69 E-value=1.2e-07 Score=79.83 Aligned_cols=102 Identities=6% Similarity=-0.007 Sum_probs=67.1
Q ss_pred CcEEEEEeccCCCC----CCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCc
Q 026891 107 RRLYLILYGETFGA----PGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPS 182 (231)
Q Consensus 107 ~~l~LLVkr~~~g~----~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g 182 (231)
+..+|||+|=+.+. .+.+-.|+||+|.+++| ++.+||.|||.||||.....+. +++.+ |..|. ...
T Consensus 57 ~~~vvLvrQyR~~v~~~~~~~~~~lElPAG~vd~~-~p~~aA~REL~EETGy~a~~~~----~l~~~-~~spG----~s~ 126 (191)
T PRK15009 57 KKTVVLIRQFRVATWVNGNESGQLIETCAGLLDND-EPEVCIRKEAIEETGYEVGEVR----KLFEL-YMSPG----GVT 126 (191)
T ss_pred CCEEEEEEcccccccccCCCCceEEEEeccccCCC-CHHHHHHHHHHHhhCCccceEE----EeeEE-EcCCc----ccC
Confidence 34688887654330 01334699999999976 6999999999999999776532 23322 22222 224
Q ss_pred eEEEEEEEEEeCC-ccc----ccCcccceeeecHHhhcccC
Q 026891 183 YKQFFFKSQVIAS-NKF----TIGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 183 ~kvfff~a~~~~G-~~~----~~~e~~d~~Wvt~eEl~~~~ 218 (231)
.++++|.|..... ... ..+|..+..|++.+|+.+.+
T Consensus 127 e~~~lf~a~~~~~~~~~~~~~de~E~iev~~~~~~e~~~~i 167 (191)
T PRK15009 127 ELIHFFIAEYSDSQRANAGGGVEDEDIEVLELPFSQALEMI 167 (191)
T ss_pred cEEEEEEEEECchhcccCCCCCCCceEEEEEEcHHHHHHHH
Confidence 6788888886421 111 11355689999999998887
No 83
>COG2816 NPY1 NTP pyrophosphohydrolases containing a Zn-finger, probably nucleic-acid-binding [DNA replication, recombination, and repair]
Probab=98.66 E-value=1.9e-08 Score=88.69 Aligned_cols=93 Identities=14% Similarity=0.139 Sum_probs=70.6
Q ss_pred EEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEE-EecccceEEEEecCCCCCCCCCceEEEEE
Q 026891 110 YLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTY-FVGNAPMGHMVMQPAEKMPDVPSYKQFFF 188 (231)
Q Consensus 110 ~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~-~vg~~P~g~~~y~~~~~~~~~~g~kvfff 188 (231)
+||.++++ ...|..+.=.|-||+|||++||..||+.||+|+.+.-. ++ +..-+.+| +.-+.=|
T Consensus 157 ilLa~~~~----h~~g~yS~LAGFVE~GETlE~AV~REv~EE~Gi~V~~vrY~-----~SQPWPfP-------~SLMigf 220 (279)
T COG2816 157 ILLARHPR----HFPGMYSLLAGFVEPGETLEQAVAREVFEEVGIKVKNVRYV-----GSQPWPFP-------HSLMLGF 220 (279)
T ss_pred eeecCCCC----CCCcceeeeeecccCCccHHHHHHHHHHHhhCeEEeeeeEE-----eccCCCCc-------hhhhhhh
Confidence 77777652 34788899999999999999999999999999977531 11 21222333 3467778
Q ss_pred EEEEeCCcccccC-cccceeeecHHhhcccC
Q 026891 189 KSQVIASNKFTIG-KCEDFVWVTKDELMEYF 218 (231)
Q Consensus 189 ~a~~~~G~~~~~~-e~~d~~Wvt~eEl~~~~ 218 (231)
.|.+.+|+++.+. |..|.+|.|++|+...+
T Consensus 221 ~aey~sgeI~~d~~Eleda~WFs~~evl~~L 251 (279)
T COG2816 221 MAEYDSGEITPDEGELEDARWFSRDEVLPAL 251 (279)
T ss_pred eeeeccccccCCcchhhhccccCHhHHhhhc
Confidence 8999999977654 89999999999965555
No 84
>PLN02552 isopentenyl-diphosphate delta-isomerase
Probab=98.61 E-value=5.6e-07 Score=78.67 Aligned_cols=108 Identities=15% Similarity=0.150 Sum_probs=60.1
Q ss_pred cEEEEEeccCCCCCCCCCce-----ecCceecCCCC----------C---HHHHHHHHHHHHhCCCeeEEEec-ccceEE
Q 026891 108 RLYLILYGETFGAPGGKPIW-----HFPEKVYESEE----------S---LRKCAECALQSVLGDLSHTYFVG-NAPMGH 168 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W-----~FP~G~ve~gE----------t---l~qaA~Rel~Ee~G~~i~v~~vg-~~P~g~ 168 (231)
..+||-||...+ ....|.| ..|++..+.|| + ..+||.|||+||+|+.+....+. -.+++.
T Consensus 68 g~lLLQkRs~~K-~~~Pg~Wd~s~~GHp~~ge~~~e~~~e~~~~~~~~~~~~eAA~REL~EElGI~~~~~~~~~l~~~~~ 146 (247)
T PLN02552 68 YELLLQQRAATK-VTFPLVWTNTCCSHPLYGQDPNEVDRESELIDGNVLGVKNAAQRKLLHELGIPAEDVPVDQFTFLTR 146 (247)
T ss_pred CeEEEEEecCCC-CCCCcceecccCCccccccccccccccccccccchhhHHHHHHhHHHHHhCCCccccccccceeeeE
Confidence 357777775321 3356789 55566544433 2 78999999999999985421100 112333
Q ss_pred EEecCCCCC----CCCC---ceEEEEEEEEEe-CCccccc-CcccceeeecHHhhccc
Q 026891 169 MVMQPAEKM----PDVP---SYKQFFFKSQVI-ASNKFTI-GKCEDFVWVTKDELMEY 217 (231)
Q Consensus 169 ~~y~~~~~~----~~~~---g~kvfff~a~~~-~G~~~~~-~e~~d~~Wvt~eEl~~~ 217 (231)
+.|..+... .+.. -...+||. ... .+.+.++ +|+.++.|++.+||.+.
T Consensus 147 ~~y~~~~~~~~~~~~~~~E~e~~~v~~~-~~~~~~~l~lq~eEV~~~~wvs~~el~~~ 203 (247)
T PLN02552 147 LHYKAADDVTHGPDGKWGEHELDYLLFI-RPVRDVKVNPNPDEVADVKYVNREELKEM 203 (247)
T ss_pred EEEecccccccccCCCccceEEEEEEEE-EecCCCcccCCHHHhheEEEEeHHHHHHH
Confidence 334332210 0000 01112222 223 3355554 48999999999999987
No 85
>PLN03143 nudix hydrolase; Provisional
Probab=98.52 E-value=6.3e-07 Score=80.03 Aligned_cols=105 Identities=10% Similarity=0.032 Sum_probs=62.5
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCC-CCHHHHHHHHHHHHhCCCee---EEEec---ccceEEEEecCCCCCCCC
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESE-ESLRKCAECALQSVLGDLSH---TYFVG---NAPMGHMVMQPAEKMPDV 180 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~g-Etl~qaA~Rel~Ee~G~~i~---v~~vg---~~P~g~~~y~~~~~~~~~ 180 (231)
..++||+|-+.+ .+.-.|+||+|.++++ |++.+||.||++||||..+. ...++ +...|...|..+...
T Consensus 143 ~~VlLVrQ~R~p--vg~~~lE~PAG~lD~~~edp~~aA~REL~EETG~~~~a~~lv~L~~~~~~~~g~~v~pspG~~--- 217 (291)
T PLN03143 143 TYAVLTEQVRVP--VGKFVLELPAGMLDDDKGDFVGTAVREVEEETGIKLKLEDMVDLTAFLDPSTGCRMFPSPGGC--- 217 (291)
T ss_pred EEEEEEEeEecC--CCcEEEEecccccCCCCCCHHHHHHHHHHHHHCCccccceEEEeeeccccCcCceEEecCCcc---
Confidence 346777765432 2345799999999974 89999999999999999753 21121 000111222233221
Q ss_pred CceEEEEEEEEEe--C-------Cccc-c--cCcccceeeecHHhhcccC
Q 026891 181 PSYKQFFFKSQVI--A-------SNKF-T--IGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 181 ~g~kvfff~a~~~--~-------G~~~-~--~~e~~d~~Wvt~eEl~~~~ 218 (231)
...+.+|.|.-. . +... . .+|..+..|++.+|+.+..
T Consensus 218 -dE~i~Lfla~~~v~~~~l~~l~~~~~~l~degE~Iev~~vpl~eiw~~~ 266 (291)
T PLN03143 218 -DEEISLFLYRGHVDKETIRQLQGKETGLRDHGELIKVHVVPYRELWRMT 266 (291)
T ss_pred -CCeEEEEEEccccchhhhcccccccCCCCCCCcEEEEEEEEHHHHHHHH
Confidence 234445544432 1 1110 1 1255678999999998877
No 86
>KOG3084 consensus NADH pyrophosphatase I of the Nudix family of hydrolases [Replication, recombination and repair]
Probab=98.51 E-value=1.8e-07 Score=83.31 Aligned_cols=97 Identities=10% Similarity=0.071 Sum_probs=62.7
Q ss_pred cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEec-CCCCCCCCCceEEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQ-PAEKMPDVPSYKQF 186 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~-~~~~~~~~~g~kvf 186 (231)
...||.+++++ ..|.|..|.|-+|+|||++||+.||+.||+|++++..- +....-.. +|.. .-++
T Consensus 200 ~~~LL~R~~r~----~~gl~t~lAGFlEpGES~eeav~REtwEEtGi~V~~I~----~~asQPWP~~p~S------LMIg 265 (345)
T KOG3084|consen 200 KHALLGRQKRY----PPGLWTCLAGFLEPGESIEEAVRRETWEETGIEVEVIS----YVASQPWPLMPQS------LMIG 265 (345)
T ss_pred CEeeeecccCC----CCchhhhhhccCCccccHHHHHHHHHHHHhCceeeeEe----eeecCCCCCCchH------HHHH
Confidence 35677776643 47899999999999999999999999999999876521 11111111 1110 1122
Q ss_pred EEEEEEeCCccccc-C-cccceeeecHHhhcccC
Q 026891 187 FFKSQVIASNKFTI-G-KCEDFVWVTKDELMEYF 218 (231)
Q Consensus 187 ff~a~~~~G~~~~~-~-e~~d~~Wvt~eEl~~~~ 218 (231)
++.-.-+++...+. + +..|.+|.+.+|+.+-+
T Consensus 266 c~ala~~~~~I~vd~dlEleDaqwF~r~ev~~aL 299 (345)
T KOG3084|consen 266 CLALAKLNGKISVDKDLELEDAQWFDREEVKSAL 299 (345)
T ss_pred HHHHHhhCCccccCcchhhhhcccccHHHHHHHH
Confidence 22211223444332 2 78899999999998766
No 87
>PLN02791 Nudix hydrolase homolog
Probab=98.47 E-value=8.2e-07 Score=88.26 Aligned_cols=108 Identities=6% Similarity=-0.006 Sum_probs=66.0
Q ss_pred cEEEEEeccCCCCCCCCCceec-CceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCC-CCceEE
Q 026891 108 RLYLILYGETFGAPGGKPIWHF-PEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPD-VPSYKQ 185 (231)
Q Consensus 108 ~l~LLVkr~~~g~~~~~~~W~F-P~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~-~~g~kv 185 (231)
..+||-||.. ......|.|.+ |+|++..|||..+||.|||.||+|+.+....+ ..++.+.+........ ......
T Consensus 45 gelLLQkRS~-~K~~~PG~WDiS~gGHv~aGEs~~eAA~REL~EELGI~l~~~~l--~~l~~~~~~~~~~~g~~~e~E~~ 121 (770)
T PLN02791 45 QELLLQRRAD-CKDSWPGQWDISSAGHISAGDTSLLSAQRELEEELGIILPKDAF--ELLFVFLQECVINDGKFINNEYN 121 (770)
T ss_pred CeEEEEEecC-CCCCCCCcccCcCCCCCCCCCCHHHHHHHHHHHHhCCCCChhhe--eeeeeEEEEeeccCCCcceeeEE
Confidence 4467777653 21457899999 79999999999999999999999997532111 1123222211000000 001223
Q ss_pred EEEEEEEeCC----ccccc-CcccceeeecHHhhcccC
Q 026891 186 FFFKSQVIAS----NKFTI-GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 186 fff~a~~~~G----~~~~~-~e~~d~~Wvt~eEl~~~~ 218 (231)
..|.+..... ++.++ +|+.++.|++.+|+.+.+
T Consensus 122 ~VYlv~~~~~~p~~~~~lq~eEV~~v~wvsl~El~~~l 159 (770)
T PLN02791 122 DVYLVTTLDPIPLEAFTLQESEVSAVKYMSIEEYKSAL 159 (770)
T ss_pred EEEEEEECCCCCcccCCCChhhhheeEEEcHHHHHHHH
Confidence 3455554332 23333 489999999999998555
No 88
>PF14815 NUDIX_4: NUDIX domain; PDB: 1VRL_A 1RRQ_A 3G0Q_A 3FSQ_A 1RRS_A 3FSP_A.
Probab=98.46 E-value=9.7e-07 Score=67.56 Aligned_cols=100 Identities=21% Similarity=0.286 Sum_probs=61.5
Q ss_pred CCcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEE
Q 026891 106 DRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQ 185 (231)
Q Consensus 106 ~~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kv 185 (231)
+++.|||.||+..| =-+|.|+||...++...+ .+++.+.+.+..|..+... .+++.++|.+... ...+
T Consensus 7 ~~~~~Ll~kRp~~g--ll~GLwefP~~e~~~~~~-~~~l~~~~~~~~~~~~~~~----~~~~~v~H~fSH~-----~~~~ 74 (114)
T PF14815_consen 7 SQGRVLLEKRPEKG--LLAGLWEFPLIESDEEDD-EEELEEWLEEQLGLSIRSV----EPLGTVKHVFSHR-----RWTI 74 (114)
T ss_dssp TTSEEEEEE--SSS--TTTT-EE--EEE-SSS-C-HHHHHHHTCCSSS-EEEE-----S-SEEEEEE-SSE-----EEEE
T ss_pred eCCEEEEEECCCCC--hhhcCcccCEeCccCCCC-HHHHHHHHHHHcCCChhhh----eecCcEEEEccce-----EEEE
Confidence 45679999998533 367899999999984444 6666667767777765542 2567778777653 3678
Q ss_pred EEEEEEEeCCcccccCcccceeeecHHhhcccC-cc
Q 026891 186 FFFKSQVIASNKFTIGKCEDFVWVTKDELMEYF-PE 220 (231)
Q Consensus 186 fff~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~-p~ 220 (231)
.+|.+.+..+... ...++.|++.+|+.++- |.
T Consensus 75 ~~~~~~~~~~~~~---~~~~~~W~~~~~l~~~~~p~ 107 (114)
T PF14815_consen 75 HVYEVEVSADPPA---EPEEGQWVSLEELDQYPLPT 107 (114)
T ss_dssp EEEEEEEE-SS-------TTEEEEEGGGGGGS---H
T ss_pred EEEEEEecCCCCC---CCCCcEEEEHHHHhhCCCCH
Confidence 8899988866543 35799999999999987 75
No 89
>KOG0648 consensus Predicted NUDIX hydrolase FGF-2 and related proteins [Signal transduction mechanisms]
Probab=97.89 E-value=7e-06 Score=72.94 Aligned_cols=125 Identities=16% Similarity=0.176 Sum_probs=74.5
Q ss_pred CCCCCcccccCCCcchhhhcCC-cEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEeccc
Q 026891 86 APRITETDKTNDRKSLQRALDR-RLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNA 164 (231)
Q Consensus 86 ~~r~T~aD~~~d~~Sl~R~L~~-~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~ 164 (231)
++-.|++|.+.-.--.-=-++. +.+|+|+-+ .|.....|.|.||+|.+++||.+-.+|.||++||+|++.. |+.
T Consensus 104 ~~~~lP~~Ash~vgvg~~V~n~~~eVlVv~e~-d~~~~~~~~wK~ptG~v~~~e~i~~gavrEvkeetgid~e--f~e-- 178 (295)
T KOG0648|consen 104 APSTLPANASHRVGVGAFVLNKKKEVLVVQEK-DGAVKIRGGWKLPTGRVEEGEDIWHGAVREVKEETGIDTE--FVE-- 178 (295)
T ss_pred ccccCCCchhhheeeeeeEecCCceeEEEEec-ccceeecccccccceEecccccchhhhhhhhHHHhCcchh--hhh--
Confidence 3456677654222111111222 478999754 2323467899999999999999999999999999998544 221
Q ss_pred ceEEEEecCCCCCCCCCceEEEEEEEEEeCCccccc---CcccceeeecHHhhcccC
Q 026891 165 PMGHMVMQPAEKMPDVPSYKQFFFKSQVIASNKFTI---GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 165 P~g~~~y~~~~~~~~~~g~kvfff~a~~~~G~~~~~---~e~~d~~Wvt~eEl~~~~ 218 (231)
+..+.-.....-..+..-.||.|.+-.-.+.++ .++..++|+..+|.....
T Consensus 179 ---Vla~r~~H~~~~~~~ksd~f~~c~L~p~s~~i~~~~~ei~~~~Wmp~~e~v~qp 232 (295)
T KOG0648|consen 179 ---VLAFRRAHNATFGLIKSDMFFTCELRPRSLDITKCKREIEAAAWMPIEEYVSQP 232 (295)
T ss_pred ---HHHHHhhhcchhhcccccceeEEEeeccccccchhHHHHHHHhcccHHHhhccc
Confidence 111111111000001334577787754333222 267788999999887766
No 90
>COG4119 Predicted NTP pyrophosphohydrolase [DNA replication, recombination, and repair / General function prediction only]
Probab=97.85 E-value=5.1e-05 Score=59.61 Aligned_cols=115 Identities=15% Similarity=0.177 Sum_probs=72.9
Q ss_pred hhhhcCCc-EEEEEeccCCCC---CCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCC
Q 026891 101 LQRALDRR-LYLILYGETFGA---PGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEK 176 (231)
Q Consensus 101 l~R~L~~~-l~LLVkr~~~g~---~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~ 176 (231)
|+|.-+.. .||||.-. |- ..+.|.|++|.|.+..||.+.-||.||..||+|+.+.-- ...+|.++ -
T Consensus 10 lYR~~aG~v~VLLvHPG--GPFWa~kD~GAWSIPKGey~~gEdp~~AArREf~EE~Gi~vdGP---~~~lG~~k--Q--- 79 (161)
T COG4119 10 LYRARAGVVDVLLVHPG--GPFWAGKDDGAWSIPKGEYTGGEDPWLAARREFSEEIGICVDGP---RIDLGSLK--Q--- 79 (161)
T ss_pred EEEecCCCEEEEEecCC--CCccccCCCCcccccccccCCCcCHHHHHHHHhhhhhceeecCc---hhhhhhhc--c---
Confidence 44544444 58888532 20 135688999999999999999999999999999977421 12233332 1
Q ss_pred CCCCCceEEEEEE--EEE----------------eCCcccccCcccceeeecHHhhcccC-cchHHHHHhh
Q 026891 177 MPDVPSYKQFFFK--SQV----------------IASNKFTIGKCEDFVWVTKDELMEYF-PESAEFLNKM 228 (231)
Q Consensus 177 ~~~~~g~kvfff~--a~~----------------~~G~~~~~~e~~d~~Wvt~eEl~~~~-p~~~~~v~~~ 228 (231)
.-|..|..|. |.+ -+|....-.++....|.+..|....+ ...+.++.++
T Consensus 80 ---~GGKvVta~~veae~Dva~~rSntFe~eWPprSG~M~~FPEVDRagWF~l~eAr~Kil~gQRpfldrL 147 (161)
T COG4119 80 ---SGGKVVTAFGVEAELDVADARSNTFELEWPPRSGKMRKFPEVDRAGWFPLAEARTKILKGQRPFLDRL 147 (161)
T ss_pred ---CCCcEEEEEeeeeeeehhhhhcceeeeecCCCCCccccCcccccccceecHHHHhHHhhccchHHHHH
Confidence 1133333333 222 12333222478899999999998877 5666666554
No 91
>KOG3041 consensus Nucleoside diphosphate-sugar hydrolase of the MutT (NUDIX) family [Replication, recombination and repair]
Probab=97.49 E-value=0.00056 Score=57.60 Aligned_cols=127 Identities=12% Similarity=0.093 Sum_probs=69.0
Q ss_pred CCCCCCCCcccccCCC----cchhhhcCCcEEEEEeccCCCCCCCCC-ceecCceecCCCCCHHHHHHHHHHHHhCCCee
Q 026891 83 YVPAPRITETDKTNDR----KSLQRALDRRLYLILYGETFGAPGGKP-IWHFPEKVYESEESLRKCAECALQSVLGDLSH 157 (231)
Q Consensus 83 ~~p~~r~T~aD~~~d~----~Sl~R~L~~~l~LLVkr~~~g~~~~~~-~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~ 157 (231)
+.-+-|.|......|- .=|++- .+.-++|+|+=+ ++.++ --+||.|-+..||+..+||.|||+||+|..=+
T Consensus 60 wes~~Rttr~ea~~dgVaIl~il~~d-G~~~ivL~kQfR---pP~Gk~ciElPAGLiD~ge~~~~aAiREl~EEtGy~gk 135 (225)
T KOG3041|consen 60 WESVQRTTRVEARADGVAILAILESD-GKPYIVLVKQFR---PPTGKICIELPAGLIDDGEDFEGAAIRELEEETGYKGK 135 (225)
T ss_pred eehheecccccccCCeEEEEEEEecC-CcEEEEEEEeec---CCCCcEEEEcccccccCCCchHHHHHHHHHHHhCccce
Confidence 4455566643333332 233331 122455555432 34444 58999999999999999999999999999755
Q ss_pred EEEecccceEEEEecCCCCCCCCCceEEEEEEEEEeCCc-cc--c-cCcccceeeecHHhhcccC
Q 026891 158 TYFVGNAPMGHMVMQPAEKMPDVPSYKQFFFKSQVIASN-KF--T-IGKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 158 v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff~a~~~~G~-~~--~-~~e~~d~~Wvt~eEl~~~~ 218 (231)
+.. ..|.. |..|.-.+......++-+....-..+ +. + ..|..+.-=+...+|.+++
T Consensus 136 v~~--~s~~~---f~DPGltn~~~~iv~v~idg~~pEnqrp~q~ledgEfIev~~i~~~~L~~~~ 195 (225)
T KOG3041|consen 136 VDM--VSPTV---FLDPGLTNCNLCIVVVDIDGDVPENQRPVQQLEDGEFIEVFLIPLSELWREL 195 (225)
T ss_pred eee--ccccE---EcCCCCCCCceEEEEEEecCCCccccCccccCCCCceEEEEEeeHHHHHHHH
Confidence 533 23432 23332211112233333322221111 11 1 1256677777888887776
No 92
>KOG4195 consensus Transient receptor potential-related channel 7 [Inorganic ion transport and metabolism]
Probab=97.30 E-value=0.00084 Score=57.45 Aligned_cols=109 Identities=9% Similarity=0.166 Sum_probs=64.0
Q ss_pred EEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEE-------EecccceEEEEec-CCCCCC--C
Q 026891 110 YLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTY-------FVGNAPMGHMVMQ-PAEKMP--D 179 (231)
Q Consensus 110 ~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~-------~vg~~P~g~~~y~-~~~~~~--~ 179 (231)
++.||++ +.|.|.+|||-+++||.+-+++.||+.||.=..++-. ++.+ ||...|+ |-++.+ +
T Consensus 141 ~vavkr~------d~~~WAiPGGmvdpGE~vs~tLkRef~eEa~ns~~k~~e~~l~~~~~~--~g~evYkGYvDDpRNTD 212 (275)
T KOG4195|consen 141 FVAVKRP------DNGEWAIPGGMVDPGEKVSATLKREFGEEAMNSLQKSNEEMLHKLLSQ--CGMEVYKGYVDDPRNTD 212 (275)
T ss_pred EEEEecC------CCCcccCCCCcCCchhhhhHHHHHHHHHHHHHHHhhhhHHHHHHHHHh--CCeEEeeeecCCCCccc
Confidence 6778875 6889999999999999999999999999863322211 1122 4444443 222111 1
Q ss_pred CCceEEEEEEEEEeCCcc----ccc--CcccceeeecHHhhcccCcchHHHHH
Q 026891 180 VPSYKQFFFKSQVIASNK----FTI--GKCEDFVWVTKDELMEYFPESAEFLN 226 (231)
Q Consensus 180 ~~g~kvfff~a~~~~G~~----~~~--~e~~d~~Wvt~eEl~~~~p~~~~~v~ 226 (231)
.--..+..+..|...|+. .+. ++.+.++|+..+.=..+......+++
T Consensus 213 NaWmET~avn~hde~g~~~~nl~L~AgDda~~vrW~dVn~~l~LyAshs~fi~ 265 (275)
T KOG4195|consen 213 NAWMETVAVNFHDEDGNNMDNLNLEAGDDAKKVRWVDVNSNLPLYASHSQFIQ 265 (275)
T ss_pred ccceeEEEEeeeccccchhccccccccCcccceeEEEecCCccchhhHHHHHH
Confidence 222344444445555532 222 46789999977654433333333433
No 93
>COG1443 Idi Isopentenyldiphosphate isomerase [Lipid metabolism]
Probab=96.95 E-value=0.0031 Score=52.18 Aligned_cols=117 Identities=17% Similarity=0.148 Sum_probs=65.8
Q ss_pred CCCcchhhhcCCc------EEEEEeccCCCCCCCCCceecCc-eecCCCCCHHHHHHHHHHHHhCCCeeEEE-ecccceE
Q 026891 96 NDRKSLQRALDRR------LYLILYGETFGAPGGKPIWHFPE-KVYESEESLRKCAECALQSVLGDLSHTYF-VGNAPMG 167 (231)
Q Consensus 96 ~d~~Sl~R~L~~~------l~LLVkr~~~g~~~~~~~W~FP~-G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~-vg~~P~g 167 (231)
.|.-.|+|.-+-. ..||.||.. ..+--.|.|.=-- |+=-+|||..+||+|-|..|+|+....+- ....|
T Consensus 27 ~d~~~LHrAFS~~lFne~g~LLltrRA~-~K~twP~vWTNSvCsHP~~~es~~~A~~rRl~~ELGie~~~~d~~~il~-- 103 (185)
T COG1443 27 GDTPRLHRAFSSFLFNERGQLLLTRRAL-SKKTWPGVWTNSVCSHPLPGESNEDAARRRLAYELGIEPDQYDKLEILP-- 103 (185)
T ss_pred cccHHHHhhhheeEECCCCceeeehhhh-hcccCcccccccccCCCcCCCchHHHHHHHHHHHhCCCCcccCcccccc--
Confidence 3444477776543 456666652 1122344553110 22238999999999999999999876321 01112
Q ss_pred EEEecCCCCCC--CCCceEEEEEEEEEeCCccccc-CcccceeeecHHhhcccC
Q 026891 168 HMVMQPAEKMP--DVPSYKQFFFKSQVIASNKFTI-GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 168 ~~~y~~~~~~~--~~~g~kvfff~a~~~~G~~~~~-~e~~d~~Wvt~eEl~~~~ 218 (231)
.+.|+-+.... +..---|++++... .+... +|+.+|+|++.+++.+.+
T Consensus 104 rf~YrA~~~~~~~E~Eic~V~~~~~~~---~~~~npdEV~~~~wv~~e~l~~~~ 154 (185)
T COG1443 104 RFRYRAADPDGIVENEICPVLAARLDS---ALDPNPDEVMDYRWVSPEDLKEMV 154 (185)
T ss_pred ceEEeccCCCCcceeeeeeEEEEeecC---CCCCChHHhhheeccCHHHHHHhh
Confidence 23444222210 00012344444432 33332 589999999999999988
No 94
>PLN02839 nudix hydrolase
Probab=96.92 E-value=0.004 Score=57.30 Aligned_cols=94 Identities=9% Similarity=0.000 Sum_probs=62.4
Q ss_pred CCCce-ecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEEEEEEEeCCc-cccc
Q 026891 123 GKPIW-HFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFFKSQVIASN-KFTI 200 (231)
Q Consensus 123 ~~~~W-~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff~a~~~~G~-~~~~ 200 (231)
..|.| ..-+|.+..|||+.+|+.||+.||.|+..... -.-.|+|.+.|.+.... ......+|.|-..+-.+- +..+
T Consensus 232 ~PGmLDn~VAGGi~aGesp~etliREa~EEAgLp~~l~-~~~~~~G~VsY~~~~~~-g~~~evly~YDLeLP~df~P~~q 309 (372)
T PLN02839 232 YPGMLDHLVAGGLPHGISCGENLVKECEEEAGISKAIA-DRAIAVGAVSYMDIDQY-CFKRDVLFCYDLELPQDFVPKNQ 309 (372)
T ss_pred CCChhhhccccCccCCCCHHHHHHHHHHHHcCCCHHHH-hcceEeEEEEEEEEcCC-ccccCEEEEeeeecCCccccCCC
Confidence 44555 35568899999999999999999999964321 01246788887643221 122345666666554332 2223
Q ss_pred -CcccceeeecHHhhcccC
Q 026891 201 -GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 201 -~e~~d~~Wvt~eEl~~~~ 218 (231)
+|+.+|.+++.+|+.+.+
T Consensus 310 DGEVe~F~Lm~v~EV~~~l 328 (372)
T PLN02839 310 DGEVESFKLIPVAQVANVI 328 (372)
T ss_pred ccceeEEEEecHHHHHHHH
Confidence 489999999999997554
No 95
>KOG3069 consensus Peroxisomal NUDIX hydrolase [Replication, recombination and repair]
Probab=96.69 E-value=0.0057 Score=52.88 Aligned_cols=99 Identities=14% Similarity=0.049 Sum_probs=60.5
Q ss_pred EEEEEeccCCCCCCCCCceecCceecCCC-CCHHHHHHHHHHHHhCCCee-EEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 109 LYLILYGETFGAPGGKPIWHFPEKVYESE-ESLRKCAECALQSVLGDLSH-TYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 109 l~LLVkr~~~g~~~~~~~W~FP~G~ve~g-Etl~qaA~Rel~Ee~G~~i~-v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
.+||.||.+-= ....|.=.||||+.+++ .|-.+||.||-.||.|++-+ +.++|..|--+.. . +..|+
T Consensus 59 ~vLltkRSr~L-rshsGev~fPGG~~d~~D~s~~~tAlREt~EEIGl~~~~~~~~g~l~~~~~r----~------~~~v~ 127 (246)
T KOG3069|consen 59 SVLLTKRSRTL-RSHSGEVCFPGGRRDPHDKSDIQTALRETEEEIGLDPELVDVLGALPPFVLR----S------GWSVF 127 (246)
T ss_pred EEEEEeccccc-cccCCceeCCCCcCCccccchHHHHHHHHHHHhCCCHHHhhhhhhccceeec----c------Ccccc
Confidence 36677665211 24668899999999988 56677999999999999653 3345554422221 1 11222
Q ss_pred EEEEEEeCC----ccccc-CcccceeeecHHhhcccC
Q 026891 187 FFKSQVIAS----NKFTI-GKCEDFVWVTKDELMEYF 218 (231)
Q Consensus 187 ff~a~~~~G----~~~~~-~e~~d~~Wvt~eEl~~~~ 218 (231)
-+.|-+..- ...++ +|+.+.-||+.+++..-.
T Consensus 128 p~v~~l~~~~~l~~~~ln~gEv~~~F~VPL~~ll~~~ 164 (246)
T KOG3069|consen 128 PVVGFLSDKKILPSLRLNSGEVESAFWVPLTDLLLPK 164 (246)
T ss_pred eeEEEEecccccccccCCchheeeeeeeeHHHHhhhh
Confidence 222222111 11222 489999999999986544
No 96
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=95.52 E-value=0.0052 Score=55.48 Aligned_cols=92 Identities=20% Similarity=0.221 Sum_probs=58.1
Q ss_pred EEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEEEE
Q 026891 110 YLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFFK 189 (231)
Q Consensus 110 ~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff~ 189 (231)
+|||+.- .+..|.||.|++...|+-..||.||+.||+|-+..-..--| .+-+. ...|.-++.|.
T Consensus 97 ~llv~g~------qa~sw~fprgK~~kdesd~~caiReV~eetgfD~skql~~~--------e~Ie~--nI~dq~~~~fI 160 (348)
T KOG2937|consen 97 CLLVKGW------QASSWSFPRGKISKDESDSDCAIREVTEETGFDYSKQLQDN--------EGIET--NIRDQLVRLFI 160 (348)
T ss_pred hheeece------ecccccccCccccccchhhhcchhcccchhhcCHHHHhccc--------cCccc--chhhceeeeee
Confidence 7788754 23459999999999999999999999999999876432111 11111 12234444332
Q ss_pred EE-E---eCCcccccCcccceeeecHHhhccc
Q 026891 190 SQ-V---IASNKFTIGKCEDFVWVTKDELMEY 217 (231)
Q Consensus 190 a~-~---~~G~~~~~~e~~d~~Wvt~eEl~~~ 217 (231)
.. + +.-.+..-.+++...|...++|...
T Consensus 161 i~gvs~d~~f~~~v~~eis~ihW~~l~~l~~t 192 (348)
T KOG2937|consen 161 INGVSEDTNFNPRVRKEISKIHWHYLDHLVPT 192 (348)
T ss_pred eccceeeeecchhhhccccceeeeehhhhccc
Confidence 21 1 1111112248899999999999443
No 97
>PRK10880 adenine DNA glycosylase; Provisional
Probab=94.55 E-value=0.097 Score=48.17 Aligned_cols=95 Identities=7% Similarity=-0.073 Sum_probs=51.1
Q ss_pred CCcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEE
Q 026891 106 DRRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQ 185 (231)
Q Consensus 106 ~~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kv 185 (231)
++..+||.||+..| -.+|.|+||+.. .. +. .++..++.|..... +. .++.++|.+... ...+
T Consensus 240 ~~~~~~l~~r~~~g--l~~gl~~fP~~~--~~----~~-~~~~~~~~~~~~~~--~~--~~~~~~H~fTH~-----~~~~ 301 (350)
T PRK10880 240 HGDEVWLEQRPPSG--LWGGLFCFPQFA--DE----EE-LRQWLAQRGIAADN--LT--QLTAFRHTFSHF-----HLDI 301 (350)
T ss_pred ECCEEEEEECCccC--hhhccccCCCCc--ch----hh-HHHHHHhcCCchhh--hc--ccCceEEEEeeE-----EEEE
Confidence 45678888887432 367899999752 11 12 23444666764221 11 123344444322 1344
Q ss_pred EEEEEEEeCCcccccCcccceeeecHHhhcccC-cc
Q 026891 186 FFFKSQVIASNKFTIGKCEDFVWVTKDELMEYF-PE 220 (231)
Q Consensus 186 fff~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~-p~ 220 (231)
..|.+...+..... ...+..|++.+|+.++- |.
T Consensus 302 ~~~~~~~~~~~~~~--~~~~~~w~~~~~~~~~~~p~ 335 (350)
T PRK10880 302 VPMWLPVSSFTGCM--DEGNGLWYNLAQPPSVGLAA 335 (350)
T ss_pred EEEEEEcccccccc--CCcCCeEechHHhcccCCcH
Confidence 45555543222111 12355799999999987 64
No 98
>KOG0142 consensus Isopentenyl pyrophosphate:dimethylallyl pyrophosphate isomerase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=93.75 E-value=0.15 Score=43.26 Aligned_cols=78 Identities=12% Similarity=0.117 Sum_probs=48.6
Q ss_pred CCHHHHHHHHHHHHhCCCeeEEEec-ccceEEEEecCCCCCCCCCceEEEEEEEEEeCCccccc---CcccceeeecHHh
Q 026891 138 ESLRKCAECALQSVLGDLSHTYFVG-NAPMGHMVMQPAEKMPDVPSYKQFFFKSQVIASNKFTI---GKCEDFVWVTKDE 213 (231)
Q Consensus 138 Etl~qaA~Rel~Ee~G~~i~v~~vg-~~P~g~~~y~~~~~~~~~~g~kvfff~a~~~~G~~~~~---~e~~d~~Wvt~eE 213 (231)
.-.+.||+|-|.-|+|+..+..... ..+++-+.|+-+.+ +.-|..-.-|.--+. ++..++ +|+++++||+++|
T Consensus 103 lGVr~AAqRkL~~ELGIp~e~v~pee~~~ltrihYkA~sd--g~wGEhEiDYiL~~~-~~~~~nPnpnEv~e~ryvs~ee 179 (225)
T KOG0142|consen 103 LGVRRAAQRKLKAELGIPLEEVPPEEFNFLTRIHYKAPSD--GIWGEHEIDYILFLV-KDVTLNPNPNEVSEIRYVSREE 179 (225)
T ss_pred HHHHHHHHHHHHHhhCCCccccCHHHcccceeeeeecCCC--CCcccceeeEEEEEe-ccCCCCCChhhhhHhheecHHH
Confidence 4689999999999999976542111 23356666765443 222333222222222 233322 4899999999999
Q ss_pred hcccC
Q 026891 214 LMEYF 218 (231)
Q Consensus 214 l~~~~ 218 (231)
|++.+
T Consensus 180 lkel~ 184 (225)
T KOG0142|consen 180 LKELV 184 (225)
T ss_pred HHHHH
Confidence 99998
No 99
>PF13869 NUDIX_2: Nucleotide hydrolase; PDB: 3MDG_B 2J8Q_B 3Q2S_A 3P5T_D 3BAP_A 2CL3_A 3P6Y_A 3Q2T_B 3BHO_A 3N9U_A ....
Probab=93.56 E-value=0.6 Score=39.30 Aligned_cols=48 Identities=17% Similarity=0.155 Sum_probs=30.4
Q ss_pred EEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCC---eeEEEecc
Q 026891 109 LYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDL---SHTYFVGN 163 (231)
Q Consensus 109 l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~---i~v~~vg~ 163 (231)
-+||.|.+ ...|.+|||.+..||...+.+.|-|.+-+|.. ...|.||.
T Consensus 59 HvLLLq~~-------~~~fkLPGg~l~~gE~e~~gLkrkL~~~l~~~~~~~~~w~vge 109 (188)
T PF13869_consen 59 HVLLLQIG-------NTFFKLPGGRLRPGEDEIEGLKRKLTEKLSPEDGVDPDWEVGE 109 (188)
T ss_dssp EEEEEEET-------TTEEE-SEEE--TT--HHHHHHHHHHHHHB-SSSS----EEEE
T ss_pred EEEEEecc-------CccccCCccEeCCCCChhHHHHHHHHHHcCCCcCCCCCcEecC
Confidence 35666643 45899999999999999999999999999874 34555664
No 100
>KOG1689 consensus mRNA cleavage factor I subunit [RNA processing and modification]
Probab=84.49 E-value=1.5 Score=36.43 Aligned_cols=30 Identities=17% Similarity=0.240 Sum_probs=28.6
Q ss_pred CCceecCceecCCCCCHHHHHHHHHHHHhC
Q 026891 124 KPIWHFPEKVYESEESLRKCAECALQSVLG 153 (231)
Q Consensus 124 ~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G 153 (231)
.....+|||.+++||+-.+.+.|.+.|.+|
T Consensus 93 ~tf~KLPGG~L~pGE~e~~Gl~r~l~~~Lg 122 (221)
T KOG1689|consen 93 NTFFKLPGGRLRPGEDEADGLKRLLTESLG 122 (221)
T ss_pred CEEEecCCCccCCCcchhHHHHHHHHHHhc
Confidence 568999999999999999999999999999
No 101
>PRK13910 DNA glycosylase MutY; Provisional
Probab=83.46 E-value=3.5 Score=37.04 Aligned_cols=82 Identities=11% Similarity=0.007 Sum_probs=44.8
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEE
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQF 186 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvf 186 (231)
+..+||.||. .| =.+|.|+||... . +.+.... .++.++|.+... ...+.
T Consensus 196 ~~~~ll~kr~-~~--l~~gl~~fP~~~--~--------------~~~~~~~-------~~~~~~H~fTH~-----~~~~~ 244 (289)
T PRK13910 196 NNQIALEKIE-QK--LYLGMHHFPNLK--E--------------NLEYKLP-------FLGAIKHSHTKF-----KLNLN 244 (289)
T ss_pred CCEEEEEECC-Cc--hhcccccCCCCh--h--------------hhccccc-------ccCceEEEEEeE-----EEEEE
Confidence 4578888874 22 367899999742 1 0111111 022334333322 24566
Q ss_pred EEEEEEeCCcccccCcccceeeecHHhhcccC-cch-HHHHH
Q 026891 187 FFKSQVIASNKFTIGKCEDFVWVTKDELMEYF-PES-AEFLN 226 (231)
Q Consensus 187 ff~a~~~~G~~~~~~e~~d~~Wvt~eEl~~~~-p~~-~~~v~ 226 (231)
+|.+.+... ..++.|++.+|+.++- |.- ..+++
T Consensus 245 ~~~~~~~~~-------~~~~~w~~~~~~~~~~~p~~~~k~~~ 279 (289)
T PRK13910 245 LYLAAIKDL-------KNPIRFYSLKDLETLPISSMTLKILN 279 (289)
T ss_pred EEEEEeccC-------CccceEecHHHhhhcCCcHHHHHHHH
Confidence 666654311 2456999999999987 643 34444
No 102
>KOG4432 consensus Uncharacterized NUDIX family hydrolase [General function prediction only]
Probab=71.42 E-value=6.6 Score=35.55 Aligned_cols=61 Identities=10% Similarity=0.041 Sum_probs=42.2
Q ss_pred ceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEEEEEEEe
Q 026891 126 IWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFFKSQVI 193 (231)
Q Consensus 126 ~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff~a~~~ 193 (231)
.-++=+|-+...-|+++-|..|+.||||..+... .-+++|.|...... .|.-+..|.|.+.
T Consensus 80 tielc~g~idke~s~~eia~eev~eecgy~v~~d----~l~hv~~~~~g~~~---s~sa~~l~y~ei~ 140 (405)
T KOG4432|consen 80 TIELCAGLIDKELSPREIASEEVAEECGYRVDPD----DLIHVITFVVGAHQ---SGSAQHLYYAEID 140 (405)
T ss_pred eeeeeccccccccCHHHHhHHHHHHHhCCcCChh----HceEEEEEEecccc---Cccchheeeeecc
Confidence 3567788899999999999999999999988753 23566666543221 1334455556654
No 103
>COG4112 Predicted phosphoesterase (MutT family) [General function prediction only]
Probab=62.79 E-value=22 Score=29.44 Aligned_cols=99 Identities=13% Similarity=0.056 Sum_probs=47.5
Q ss_pred EEEEEeccCCCC-CCCCCceecC-ceecCCC-------CCHHHHHHHHHHHHhCCC---eeEEEecccceEEEEecCCCC
Q 026891 109 LYLILYGETFGA-PGGKPIWHFP-EKVYESE-------ESLRKCAECALQSVLGDL---SHTYFVGNAPMGHMVMQPAEK 176 (231)
Q Consensus 109 l~LLVkr~~~g~-~~~~~~W~FP-~G~ve~g-------Etl~qaA~Rel~Ee~G~~---i~v~~vg~~P~g~~~y~~~~~ 176 (231)
-+||-+|-..|. +...+..++- ||++.++ |-|+-.++|||.||+++. .+.. ..+|.+.-..
T Consensus 73 evliyeRltgggE~RLHn~~SlG~GGHmn~~~GA~s~~evLk~n~~REleEEv~vseqd~q~~----e~lGlINdd~--- 145 (203)
T COG4112 73 EVLIYERLTGGGEKRLHNLYSLGIGGHMNEGDGATSREEVLKGNLERELEEEVDVSEQDLQEL----EFLGLINDDT--- 145 (203)
T ss_pred EEEEEEeccCcchhhhccccccccccccccCCCcccHHHHHccchHHHHHHHhCcCHHHhhhh----eeeeeecCCC---
Confidence 577777653221 1112334443 4455444 234445899999999985 2221 1244442111
Q ss_pred CCCCCceEEEEEEEEEeCCcc---ccc-CcccceeeecHHhhccc
Q 026891 177 MPDVPSYKQFFFKSQVIASNK---FTI-GKCEDFVWVTKDELMEY 217 (231)
Q Consensus 177 ~~~~~g~kvfff~a~~~~G~~---~~~-~e~~d~~Wvt~eEl~~~ 217 (231)
+.+| ||+.=......|.+ ... .+.-.++|+..+||.+.
T Consensus 146 --neVg-kVHiG~lf~~~~k~ndvevKEkd~~~~kwik~~ele~~ 187 (203)
T COG4112 146 --NEVG-KVHIGALFLGRGKFNDVEVKEKDLFEWKWIKLEELEKF 187 (203)
T ss_pred --cccc-eEEEEEEEEeeccccceeeeecceeeeeeeeHHHHHHH
Confidence 1112 22211111122222 111 14568999999999993
No 104
>COG1194 MutY A/G-specific DNA glycosylase [DNA replication, recombination, and repair]
Probab=57.73 E-value=11 Score=34.79 Aligned_cols=30 Identities=20% Similarity=0.139 Sum_probs=19.4
Q ss_pred cCCcEEEEEeccCCCCCCCCCceecCceecCC
Q 026891 105 LDRRLYLILYGETFGAPGGKPIWHFPEKVYES 136 (231)
Q Consensus 105 L~~~l~LLVkr~~~g~~~~~~~W~FP~G~ve~ 136 (231)
..+..++|.++...| =.+|.|.||......
T Consensus 244 ~~~~~~~l~kr~~~g--l~~gl~~fP~~e~~~ 273 (342)
T COG1194 244 NRDGEVLLEKRPEKG--LLGGLWCFPQFEDEA 273 (342)
T ss_pred ccCcchhhhhCcccC--ceecccccccccccc
Confidence 344456666665322 356789999998765
No 105
>PF14443 DBC1: DBC1
Probab=53.65 E-value=57 Score=25.73 Aligned_cols=36 Identities=14% Similarity=-0.058 Sum_probs=26.1
Q ss_pred CCCceec--CceecCC-CCCHHHHHHHHHHHHhCCCeeE
Q 026891 123 GKPIWHF--PEKVYES-EESLRKCAECALQSVLGDLSHT 158 (231)
Q Consensus 123 ~~~~W~F--P~G~ve~-gEtl~qaA~Rel~Ee~G~~i~v 158 (231)
.+|.|.= =||.-.. -.+|-.||+|-+++.+|+++..
T Consensus 22 iGG~WspsLDG~DP~~dp~~LI~TAiR~~K~~tgiDLS~ 60 (126)
T PF14443_consen 22 IGGPWSPSLDGGDPSSDPSVLIRTAIRTCKALTGIDLSN 60 (126)
T ss_pred cCCcCCcccCCCCCCCCcHHHHHHHHHHHHHHhccchhh
Confidence 4566752 2444443 3689999999999999998864
No 106
>TIGR01084 mutY A/G-specific adenine glycosylase. This equivalog model identifies mutY members of the pfam00730 superfamily (HhH-GPD: Helix-hairpin-helix and Gly/Pro rich loop followed by a conserved aspartate). The major members of the superfamily are nth and mutY.
Probab=50.53 E-value=21 Score=31.77 Aligned_cols=25 Identities=16% Similarity=0.049 Sum_probs=18.2
Q ss_pred CCcEEEEEeccCCCCCCCCCceecCce
Q 026891 106 DRRLYLILYGETFGAPGGKPIWHFPEK 132 (231)
Q Consensus 106 ~~~l~LLVkr~~~g~~~~~~~W~FP~G 132 (231)
.+..+||.|++..| -.+|.|+||+.
T Consensus 237 ~~~~~~~~~r~~~~--~~~gl~~~p~~ 261 (275)
T TIGR01084 237 YDGEVLLEQRPEKG--LWGGLYCFPQF 261 (275)
T ss_pred CCCeEEEEeCCCCc--hhhccccCCCC
Confidence 35679999886422 35789999985
No 107
>PF13358 DDE_3: DDE superfamily endonuclease
Probab=45.63 E-value=24 Score=26.49 Aligned_cols=26 Identities=15% Similarity=0.330 Sum_probs=22.6
Q ss_pred EEEEEeecCccCCCCCHHHHHHHHHH
Q 026891 27 ASVLFERLPVVIPKIDPVVYAFQEFS 52 (231)
Q Consensus 27 ~av~l~R~Pvv~~~~~~~E~~~~~~~ 52 (231)
.++-+..+|--+|+|||+|.-|..+.
T Consensus 106 ~~~~~~~~P~~sPdLNpiE~~w~~lk 131 (146)
T PF13358_consen 106 RGIELLFLPPYSPDLNPIENVWGYLK 131 (146)
T ss_pred cccccccccCcCCccCHHHHHHHHHH
Confidence 46888899999999999998887775
No 108
>PF14044 NETI: NETI protein
Probab=39.87 E-value=25 Score=23.89 Aligned_cols=19 Identities=16% Similarity=0.303 Sum_probs=15.5
Q ss_pred eecCCCCCHHHHHHHHHHHH
Q 026891 132 KVYESEESLRKCAECALQSV 151 (231)
Q Consensus 132 G~ve~gEtl~qaA~Rel~Ee 151 (231)
..|+++||+.+|+.| ++++
T Consensus 2 FeV~enETI~~CL~R-M~~e 20 (57)
T PF14044_consen 2 FEVEENETISDCLAR-MKKE 20 (57)
T ss_pred eeccCCCcHHHHHHH-HHHc
Confidence 468999999999999 4444
No 109
>KOG2937 consensus Decapping enzyme complex, predicted pyrophosphatase DCP2 [RNA processing and modification]
Probab=38.57 E-value=6.8 Score=35.77 Aligned_cols=42 Identities=19% Similarity=0.152 Sum_probs=35.6
Q ss_pred CCceecCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccc
Q 026891 124 KPIWHFPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAP 165 (231)
Q Consensus 124 ~~~W~FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P 165 (231)
...|.||.+++.-||-+++++.+.=.||.|...-.+...|.+
T Consensus 263 ~e~~~~~~~k~sr~e~~r~~si~s~~~e~~f~~~s~~~~n~k 304 (348)
T KOG2937|consen 263 PENWTFPKGKISRGEKPRDASIRSTFEEPGFPFGSYPEKNKK 304 (348)
T ss_pred cccccCcccccccCCccccchhhhcCCCcCCcccccchhccc
Confidence 457999999999999999999999999999877766555544
No 110
>COG0828 RpsU Ribosomal protein S21 [Translation, ribosomal structure and biogenesis]
Probab=34.45 E-value=32 Score=24.14 Aligned_cols=18 Identities=22% Similarity=0.303 Sum_probs=16.0
Q ss_pred cCceecCCCCCHHHHHHH
Q 026891 129 FPEKVYESEESLRKCAEC 146 (231)
Q Consensus 129 FP~G~ve~gEtl~qaA~R 146 (231)
+|+..|.+||+++.|+.|
T Consensus 1 M~~v~V~ene~~d~ALrr 18 (67)
T COG0828 1 MPQVKVRENEPLDKALRR 18 (67)
T ss_pred CCeeeecCCChHHHHHHH
Confidence 488999999999999876
No 111
>PF07026 DUF1317: Protein of unknown function (DUF1317); InterPro: IPR009750 This entry is represented by Bacteriophage lambda, Xis. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=26.00 E-value=56 Score=22.32 Aligned_cols=24 Identities=13% Similarity=0.120 Sum_probs=17.0
Q ss_pred CceecCceecCCCCCHHHHHHHHHHHH
Q 026891 125 PIWHFPEKVYESEESLRKCAECALQSV 151 (231)
Q Consensus 125 ~~W~FP~G~ve~gEtl~qaA~Rel~Ee 151 (231)
..|.+|+|++-.+ .-.|+|+..|.
T Consensus 22 ~GWl~Pgg~vi~N---PlkAqR~AE~~ 45 (60)
T PF07026_consen 22 NGWLMPGGKVITN---PLKAQRLAEEL 45 (60)
T ss_pred ceeecCCCeeEcC---HHHHHHHHHHH
Confidence 4599999999866 45666655443
No 112
>KOG4313 consensus Thiamine pyrophosphokinase [Nucleotide transport and metabolism]
Probab=23.22 E-value=1.4e+02 Score=26.56 Aligned_cols=88 Identities=11% Similarity=0.040 Sum_probs=52.5
Q ss_pred cCceecCCCCCHHHHHHHHHHHHhCCCeeEEEecccceEEEEecCCCCCCCCCceEEEEEEEEEeCCcccc--c-Ccccc
Q 026891 129 FPEKVYESEESLRKCAECALQSVLGDLSHTYFVGNAPMGHMVMQPAEKMPDVPSYKQFFFKSQVIASNKFT--I-GKCED 205 (231)
Q Consensus 129 FP~G~ve~gEtl~qaA~Rel~Ee~G~~i~v~~vg~~P~g~~~y~~~~~~~~~~g~kvfff~a~~~~G~~~~--~-~e~~d 205 (231)
.=+|.+.-|-.+.+||+.|..||..++.... -.-.++|.++|-+-...++..-...+.|--.+- -.+.+ . +|++.
T Consensus 169 ~vaGGl~~g~gI~eT~iKE~~EEAnl~~~~~-~Nlv~~G~VSy~~~esr~~~~pe~qYVfDL~l~-~d~iP~~nDGEV~~ 246 (306)
T KOG4313|consen 169 MVAGGLSVGFGIKETAIKEAAEEANLPSDLV-KNLVSAGCVSYYKFESRQGLFPETQYVFDLELP-LDFIPQNNDGEVQA 246 (306)
T ss_pred hhccccccCchHHHHHHHHHHHhcCCchhhH-hcceecceeEEEeeehhhccCccceEEEeccCc-hhhcCCCCCCceee
Confidence 4467788899999999999999998865221 112457777775433322221223344433322 22222 2 37888
Q ss_pred eeeecHHhhcccC
Q 026891 206 FVWVTKDELMEYF 218 (231)
Q Consensus 206 ~~Wvt~eEl~~~~ 218 (231)
|.=+|..|-.+.+
T Consensus 247 F~Lltl~~~v~~l 259 (306)
T KOG4313|consen 247 FELLTLKDCVERL 259 (306)
T ss_pred EeeecHHHHHHHH
Confidence 9988887755444
No 113
>KOG2457 consensus A/G-specific adenine DNA glycosylase [Replication, recombination and repair]
Probab=22.42 E-value=51 Score=31.11 Aligned_cols=46 Identities=24% Similarity=0.245 Sum_probs=32.0
Q ss_pred CcEEEEEeccCCCCCCCCCceecCceec-CCCCCHHH-HHHHH-HHHHhCC
Q 026891 107 RRLYLILYGETFGAPGGKPIWHFPEKVY-ESEESLRK-CAECA-LQSVLGD 154 (231)
Q Consensus 107 ~~l~LLVkr~~~g~~~~~~~W~FP~G~v-e~gEtl~q-aA~Re-l~Ee~G~ 154 (231)
++.+||++|+..| -..|.|.||.-.+ +.+|.++- |..++ +.-.++.
T Consensus 386 ~~~ilv~~rp~~g--llagLw~fpti~~~e~se~~~~~a~~q~~v~~w~~~ 434 (555)
T KOG2457|consen 386 RNAILVYLRPAFG--LLAGLWKFPTIVSRELSEFVHIFAHIQRKVYVWLLV 434 (555)
T ss_pred cceeEEEeccchh--HHHHhhhcCceeccCcchHHHHHHHHHHHHHHHhcc
Confidence 4679999987544 3568899999888 88887654 33333 6555554
No 114
>PRK00270 rpsU 30S ribosomal protein S21; Reviewed
Probab=21.53 E-value=77 Score=21.85 Aligned_cols=17 Identities=24% Similarity=0.302 Sum_probs=14.4
Q ss_pred CceecCCCCCHHHHHHH
Q 026891 130 PEKVYESEESLRKCAEC 146 (231)
Q Consensus 130 P~G~ve~gEtl~qaA~R 146 (231)
|+..|.+|||++.|+.|
T Consensus 2 ~~V~V~~~e~ie~Alrr 18 (64)
T PRK00270 2 PQVKVRENESIDKALRR 18 (64)
T ss_pred CeeEeCCCChHHHHHHH
Confidence 66788999999998876
No 115
>TIGR00030 S21p ribosomal protein S21. This model describes bacterial ribosomal protein S21 and most mitochondrial and chloroplast equivalents.
Probab=20.92 E-value=80 Score=21.33 Aligned_cols=17 Identities=18% Similarity=0.188 Sum_probs=13.8
Q ss_pred CceecCCCCCHHHHHHH
Q 026891 130 PEKVYESEESLRKCAEC 146 (231)
Q Consensus 130 P~G~ve~gEtl~qaA~R 146 (231)
|+-.|.+|||++.|+.|
T Consensus 1 ~~V~V~~~e~ie~alrr 17 (58)
T TIGR00030 1 PTVKVKEGESIDSALRR 17 (58)
T ss_pred CeeEeCCCCcHHHHHHH
Confidence 45678899999998876
Done!