BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026892
         (231 letters)

Database: swissprot 
           539,616 sequences; 191,569,459 total letters

Searching..................................................done



>sp|P00947|SDIS_COMTE Steroid Delta-isomerase OS=Comamonas testosteroni GN=ksi PE=1 SV=2
          Length = 125

 Score = 37.0 bits (84), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 9/116 (7%)

Query: 89  VVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFV 148
           VV+R+ A +N  DL  +  L ADD   ED +   P  G  A  +F+   S  +   ++  
Sbjct: 10  VVQRYVAALNAGDLDGIVALFADDATVEDPVGSEPRSGTAAIREFYAN-SLKLPLAVELT 68

Query: 149 IDDISAEDSSAVGVTWHLEWKGKP--------FPFSKGCSFYKLEVVNGKRQITYG 196
            +  +  + +A   T   E++G+         F F+       +  + G++ I  G
Sbjct: 69  QEVRAVANEAAFAFTVSFEYQGRKTVVAPIDHFRFNGAGKVVSMRALFGEKNIHAG 124


>sp|Q03735|NAB6_YEAST RNA-binding protein NAB6 OS=Saccharomyces cerevisiae (strain ATCC
           204508 / S288c) GN=NAB6 PE=1 SV=1
          Length = 1134

 Score = 30.8 bits (68), Expect = 8.9,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 34/59 (57%), Gaps = 5/59 (8%)

Query: 42  TPTTRKRLAPLSKLRIS-SSENNRT-AVDVASPLPTTSNV---DGDDGGGAVVVRRFYA 95
           TPT  +    LS ++IS ++EN+R  + D+ SPLP   ++   D +   GA++ ++  A
Sbjct: 550 TPTIEEHSTHLSNVKISKTTENSRQFSQDIPSPLPLNEHMFMNDSNQSNGAIIPQQLIA 608


  Database: swissprot
    Posted date:  Mar 23, 2013  2:32 AM
  Number of letters in database: 191,569,459
  Number of sequences in database:  539,616
  
Lambda     K      H
   0.318    0.133    0.388 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 84,079,136
Number of Sequences: 539616
Number of extensions: 3523322
Number of successful extensions: 9959
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 44
Number of HSP's that attempted gapping in prelim test: 9803
Number of HSP's gapped (non-prelim): 201
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)