Query 026892
Match_columns 231
No_of_seqs 126 out of 1110
Neff 6.1
Searched_HMMs 46136
Date Fri Mar 29 14:11:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026892.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026892hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR02096 conserved hypothetic 99.8 2.8E-17 6E-22 128.4 15.1 110 88-203 2-122 (129)
2 cd00781 ketosteroid_isomerase 99.7 3.8E-17 8.3E-22 126.8 11.3 114 84-203 3-118 (122)
3 PF12680 SnoaL_2: SnoaL-like d 99.7 2.1E-16 4.5E-21 116.1 12.8 98 90-196 1-102 (102)
4 PF07366 SnoaL: SnoaL-like pol 99.7 1.3E-15 2.8E-20 119.4 14.2 106 89-202 2-119 (126)
5 PRK08241 RNA polymerase factor 99.6 1.2E-14 2.5E-19 132.4 15.1 114 82-203 212-326 (339)
6 PF07858 LEH: Limonene-1,2-epo 99.5 2E-13 4.4E-18 109.4 12.9 110 85-202 2-116 (125)
7 TIGR02960 SigX5 RNA polymerase 99.5 4.9E-13 1.1E-17 120.7 14.5 115 81-203 201-316 (324)
8 COG3631 Ketosteroid isomerase- 99.5 8.6E-13 1.9E-17 106.9 12.9 118 83-206 3-127 (133)
9 TIGR02246 conserved hypothetic 99.2 7.5E-10 1.6E-14 85.6 14.1 110 83-196 3-121 (128)
10 PF13474 SnoaL_3: SnoaL-like d 99.1 7.2E-09 1.6E-13 79.0 14.4 108 87-199 2-117 (121)
11 COG4922 Uncharacterized protei 99.0 3.5E-09 7.5E-14 83.3 11.2 109 83-201 4-114 (129)
12 COG4319 Ketosteroid isomerase 99.0 1.5E-08 3.3E-13 82.2 12.8 111 84-197 10-128 (137)
13 PRK09636 RNA polymerase sigma 98.9 1.9E-08 4.1E-13 90.3 14.1 108 84-203 171-284 (293)
14 PF14534 DUF4440: Domain of un 98.9 3.8E-08 8.2E-13 72.9 10.6 101 87-193 2-107 (107)
15 COG4308 LimA Limonene-1,2-epox 98.8 1.2E-08 2.6E-13 80.8 7.7 110 85-202 7-119 (130)
16 cd00531 NTF2_like Nuclear tran 98.7 8.7E-07 1.9E-11 66.0 14.8 113 87-201 2-124 (124)
17 COG5485 Predicted ester cyclas 98.6 3.3E-07 7.2E-12 73.0 9.5 102 88-201 10-122 (131)
18 TIGR02957 SigX4 RNA polymerase 98.6 2.3E-06 5E-11 76.6 14.7 106 84-203 164-275 (281)
19 PF08332 CaMKII_AD: Calcium/ca 98.4 2.1E-05 4.5E-10 63.5 14.8 111 85-199 4-125 (128)
20 PF10184 DUF2358: Uncharacteri 98.4 1.2E-05 2.6E-10 63.0 13.1 90 99-196 16-113 (113)
21 PF13577 SnoaL_4: SnoaL-like d 98.4 2.1E-05 4.6E-10 60.4 14.1 111 84-197 7-127 (127)
22 COG4538 Uncharacterized conser 98.3 2.7E-05 5.8E-10 59.9 11.8 104 85-197 4-108 (112)
23 PRK09635 sigI RNA polymerase s 98.2 2.2E-05 4.7E-10 71.1 12.9 103 84-202 174-277 (290)
24 PF03284 PHZA_PHZB: Phenazine 98.1 8.4E-05 1.8E-09 61.0 11.8 113 85-204 19-143 (162)
25 PF12893 Lumazine_bd_2: Putati 98.0 0.00013 2.8E-09 56.6 12.0 105 85-195 5-112 (116)
26 PF02136 NTF2: Nuclear transpo 97.8 0.00062 1.3E-08 52.3 11.7 104 86-193 2-111 (118)
27 PF07080 DUF1348: Protein of u 97.8 0.0016 3.4E-08 52.9 14.2 100 85-190 11-113 (143)
28 COG4875 Uncharacterized protei 97.7 0.0011 2.4E-08 53.4 12.6 113 82-199 35-150 (156)
29 PF05223 MecA_N: NTF2-like N-t 97.0 0.0049 1.1E-07 48.3 8.7 111 86-207 3-117 (118)
30 cd00667 ring_hydroxylating_dio 96.8 0.11 2.4E-06 42.2 15.1 120 85-206 5-153 (160)
31 PRK10069 3-phenylpropionate di 96.5 0.25 5.5E-06 41.6 15.9 120 84-205 20-174 (183)
32 PF12870 Lumazine_bd: Lumazine 96.5 0.033 7.1E-07 41.5 9.2 100 83-193 6-110 (111)
33 cd00780 NTF2 Nuclear transport 96.3 0.28 6E-06 38.0 13.9 102 86-195 6-112 (119)
34 PF11533 DUF3225: Protein of u 95.7 0.36 7.8E-06 38.9 12.2 52 86-137 12-63 (125)
35 KOG4457 Uncharacterized conser 89.1 2.4 5.2E-05 36.1 7.8 87 107-197 57-165 (202)
36 COG3558 Uncharacterized protei 88.2 0.031 6.8E-07 44.9 -3.8 98 86-190 14-115 (154)
37 TIGR03231 anthran_1_2_B anthra 81.1 29 0.00064 28.5 13.6 32 88-119 3-34 (155)
38 PLN02382 probable sucrose-phos 80.6 54 0.0012 31.2 14.2 95 86-185 284-394 (413)
39 PF07107 WI12: Wound-induced p 80.2 6.8 0.00015 30.9 6.1 51 144-204 13-63 (109)
40 PRK01617 hypothetical protein; 77.7 30 0.00066 28.7 9.7 31 84-114 28-58 (154)
41 COG4460 Uncharacterized protei 77.6 13 0.00028 29.7 6.9 61 90-153 16-76 (130)
42 KOG0116 RasGAP SH3 binding pro 71.9 75 0.0016 30.7 12.0 96 85-186 16-118 (419)
43 PRK00183 hypothetical protein; 59.1 1.1E+02 0.0023 25.6 9.8 89 85-192 29-124 (157)
44 PRK01752 hypothetical protein; 56.0 57 0.0012 27.2 7.0 92 84-194 31-127 (156)
45 PF11453 DUF2950: Protein of u 37.2 76 0.0016 28.9 5.2 50 85-137 6-55 (271)
46 COG5517 Small subunit of pheny 34.8 42 0.00091 28.2 3.0 25 95-119 19-43 (164)
47 PRK04233 hypothetical protein; 34.7 2.4E+02 0.0053 22.7 9.9 85 86-192 34-124 (129)
48 PF15063 TC1: Thyroid cancer p 30.7 27 0.00059 25.8 1.1 17 3-19 1-17 (79)
49 PRK02250 hypothetical protein; 30.0 3.3E+02 0.0071 22.7 7.8 92 84-192 27-121 (166)
50 PF13590 DUF4136: Domain of un 29.1 1.8E+02 0.0038 22.6 5.8 18 209-226 133-150 (151)
51 KOG4353 RNA export factor NXT1 28.9 1.4E+02 0.003 24.4 4.9 50 85-137 15-64 (139)
52 PF00866 Ring_hydroxyl_B: Ring 27.7 3.2E+02 0.0069 21.8 13.1 106 96-203 5-140 (145)
53 KOG2104 Nuclear transport fact 27.5 3.3E+02 0.0071 21.9 7.9 59 85-149 9-67 (126)
54 PF04280 Tim44: Tim44-like dom 26.5 33 0.00071 27.1 1.0 28 86-113 24-51 (147)
55 TIGR03232 benzo_1_2_benB benzo 25.6 3.7E+02 0.0081 21.9 12.7 24 96-119 11-34 (155)
56 PRK15360 pathogenicity island 25.2 3.5E+02 0.0076 22.2 6.8 54 170-227 28-82 (137)
57 PF06020 Roughex: Drosophila r 20.8 72 0.0016 29.5 2.2 49 84-137 9-57 (334)
No 1
>TIGR02096 conserved hypothetical protein, steroid delta-isomerase-related. This family of proteins about 135 amino acids in length largely restricted to the Proteobacteria. This family and a delta5-3-ketosteroid isomerase from Pseudomonas testosteroni appear homologous, especially toward their respective N-termini. Members, therefore, probably are enzymes.
Probab=99.76 E-value=2.8e-17 Score=128.35 Aligned_cols=110 Identities=21% Similarity=0.380 Sum_probs=95.2
Q ss_pred HHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCCCEEEEEEEEE
Q 026892 88 VVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTWHLE 167 (231)
Q Consensus 88 ~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~~~Vav~w~~~ 167 (231)
+++++||++|+++|++.+.++|+||++|++|..+.+..|+++++++++.++. ..+++++++.++...++..++++|+++
T Consensus 2 ~iv~~~~~a~~~~d~~~~~~~~~~d~~~~~~~~~~~~~G~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~~~v~~~~~~~ 80 (129)
T TIGR02096 2 ELAQHWIEAFNRGDMDAVLALLAEDVLYDDNQGGRVLGGKAQLARFLAPYRT-AFPDLLVDVVVCRNDEGVRVAAEWTVH 80 (129)
T ss_pred HHHHHHHHHHHCCCHHHHHHhcCCCeEEEcCCCCcEeccHHHHHHHHHHHHH-hCchhhceeEEEEecCCcEEEEEEEEe
Confidence 6899999999999999999999999999998776677889999999998876 468999999888765544777777753
Q ss_pred -----------ECCeeEeeeceEEEEEEEeeCCeEEEEEEEEeeCCC
Q 026892 168 -----------WKGKPFPFSKGCSFYKLEVVNGKRQITYGRDIVEPA 203 (231)
Q Consensus 168 -----------~~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~~ 203 (231)
.+|+++.+ +++++|++ +||| |+++++|+|..
T Consensus 81 g~~~g~~~g~~~~g~~~~~-~~~~~~~~--~~gk--I~~~~~y~D~~ 122 (129)
T TIGR02096 81 GTYRTAFLGLPASGKTYSI-RGVTFFVF--DDGK--IKRETTYYNLA 122 (129)
T ss_pred eeeccccCCCCCCCCEEEe-eeeEEEEE--eCCE--EEEEEEEecHH
Confidence 25889999 89999999 7999 99999999854
No 2
>cd00781 ketosteroid_isomerase ketosteroid isomerase: Many biological reactions proceed by enzymatic cleavage of a C-H bond adjacent to carbonyl or a carboxyl group, leading to an enol or a enolate intermediate that is subsequently re-protonated at the same or an adjacent carbon. Ketosteroid isomerases are important members of this class of enzymes which are the most proficient of all enzymes known and have served as a paradigm for enzymatic enolizations since its discovery in 1954. This CD includes members of this class that calalyze the isomerization of various beta,gamma-unsaturated isomers at nearly a diffusion-controlled rate. These enzymes are widely distributed in bacteria.
Probab=99.73 E-value=3.8e-17 Score=126.79 Aligned_cols=114 Identities=21% Similarity=0.369 Sum_probs=92.7
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCCCEEEEE
Q 026892 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVT 163 (231)
Q Consensus 84 ~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~~~Vav~ 163 (231)
..+++++++|+++||++|++.+.+||+||++|++|...++++|+++++++|..++.. .+++++........++ .+++.
T Consensus 3 ~~~~~~v~~~~~a~~~~D~~~~~~l~aed~~~~~p~~~~~~~G~~~i~~~~~~~~~~-~~~~~~~~~~~~~~g~-~~~~~ 80 (122)
T cd00781 3 QEMKAAVQRYVEAVNAGDPEGIVALFADDATVEDPVGSPPRSGRAAIAAFYAQSLGG-AKRLELTGPVRASHGG-EAAFA 80 (122)
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHcCCCeEEeCCCCCCCccCHHHHHHHHHHHhcc-CceEEecCceeeecCC-EEEEE
Confidence 468899999999999999999999999999999987667799999999999987653 4566665544454443 44444
Q ss_pred E--EEEECCeeEeeeceEEEEEEEeeCCeEEEEEEEEeeCCC
Q 026892 164 W--HLEWKGKPFPFSKGCSFYKLEVVNGKRQITYGRDIVEPA 203 (231)
Q Consensus 164 w--~~~~~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~~ 203 (231)
| +...+|+++.+ +++++|+|+ +||| |+++++|||+.
T Consensus 81 ~~~~~~~~g~~~~~-~~~~v~~~~-~dGk--I~~~~~y~d~~ 118 (122)
T cd00781 81 FRVEFEWEGQPCVV-RVIDVMRFD-ADGR--IVSMRAYWGPV 118 (122)
T ss_pred EEEEEEeCCceEEE-EEEEEEEEC-CCcc--ChHHHHhcCcc
Confidence 4 45667999999 899999994 2699 99999999875
No 3
>PF12680 SnoaL_2: SnoaL-like domain; PDB: 3F40_A 3RGA_A 3G8Z_A 3DMC_A 3FH1_A 1TUH_A 3F14_A 3ER7_A 1Z1S_A 3F7X_A ....
Probab=99.71 E-value=2.1e-16 Score=116.14 Aligned_cols=98 Identities=37% Similarity=0.699 Sum_probs=86.2
Q ss_pred HHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCCCEEEEEEEEEE-
Q 026892 90 VRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTWHLEW- 168 (231)
Q Consensus 90 Vr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~~~Vav~w~~~~- 168 (231)
|++||++|+++|++++.++|+||++|++| .+++.|+++++++++.++. .++++++++.+++.+|+ .|.++|++..
T Consensus 1 V~~~~~a~~~~d~~~i~~~~~~d~~~~~~--~~~~~g~~~~~~~~~~~~~-~~~~~~~~~~~~~~~gd-~v~~~~~~~~~ 76 (102)
T PF12680_consen 1 VRRFFEAWNAGDLDAIAALFAPDAVFHDP--GGTLRGREAIREFFEEFFE-SFPDIRFEIHDIFADGD-RVVVEWTVTGT 76 (102)
T ss_dssp HHHHHHHHHTTHHHHHHHTEEEEEEEEET--TSEEESHHHHHHHHHHHHH-HEEEEEEEEEEEEEETT-EEEEEEEEEEE
T ss_pred CHHHHHHHHcCCHHHHHHHcCCCEEEEeC--CCcccCHHHHHHHHHHHHh-cCCceEEEEEEEEEcCC-EEEEEEEEEEE
Confidence 68999999999999999999999999998 3569999999999998876 56889999999987774 7777787764
Q ss_pred ---CCeeEeeeceEEEEEEEeeCCeEEEEEE
Q 026892 169 ---KGKPFPFSKGCSFYKLEVVNGKRQITYG 196 (231)
Q Consensus 169 ---~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~ 196 (231)
+|+++.+ +++++|++ +||| |+++
T Consensus 77 ~~~~g~~~~~-~~~~~~~~--~dgk--I~~~ 102 (102)
T PF12680_consen 77 TPPTGQPISF-RGCSVFRF--EDGK--IVEH 102 (102)
T ss_dssp ETTTSCEEEE-EEEEEEEE--ETTE--EEEE
T ss_pred EcCCCCEEEE-EEEEEEEE--ECCE--EEEC
Confidence 6999999 89999999 8999 7763
No 4
>PF07366 SnoaL: SnoaL-like polyketide cyclase; InterPro: IPR009959 This domain is found in SnoaL [] a polyketide cyclase involved in nogalamycin biosynthesis. This domain was formerly known as DUF1486. It adopts a distorted alpha-beta barrel fold []. Structural data together with site-directed mutagenesis experiments have shown that SnoaL has a different mechanism to that of the classical aldolase for catalysing intramolecular aldol condensation [].; PDB: 2GEY_C 3F9S_A 2GEX_A 3EHC_B 2F99_D 2F98_D 1SJW_A 3K0Z_B.
Probab=99.68 E-value=1.3e-15 Score=119.37 Aligned_cols=106 Identities=36% Similarity=0.617 Sum_probs=90.4
Q ss_pred HHHHHH-HHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCCCEEEEEEEEE
Q 026892 89 VVRRFY-AGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTWHLE 167 (231)
Q Consensus 89 lVr~fy-dAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~~~Vav~w~~~ 167 (231)
+|+++| ++||++|++.+.++++||+++++++. ++..|++++++++..++. .+||+++++++++.+| +.|+++|.++
T Consensus 2 ~v~~~~~~~~n~~d~~~~~~~~~~d~~~~~~~~-~~~~G~~~~~~~~~~~~~-afPD~~~~i~~~~~~g-d~v~~~~~~~ 78 (126)
T PF07366_consen 2 IVRRFYEEVWNRGDLDALDELVAPDVVFHDPGP-GPPVGREGFKEFLKELRA-AFPDLRFEIEDVVAEG-DRVAVRWTFT 78 (126)
T ss_dssp HHHHHHHHHHHTT-GCHHHGTEEEEEEEEGCTT-TEEEHHHHHHHHHHHHHH-HSTTTEEEEEEEEEET-TEEEEEEEEE
T ss_pred HHHHHHHHHHhCCCHHHHHHhcCCCEEEEecCC-CCCCCHHHHHHHHHHHHH-HCCCCEEEEEEEEEEC-CEEEEEEEEE
Confidence 445555 68899999999999999999998876 788999999999998775 7899999999999777 4788877763
Q ss_pred E-----------CCeeEeeeceEEEEEEEeeCCeEEEEEEEEeeCC
Q 026892 168 W-----------KGKPFPFSKGCSFYKLEVVNGKRQITYGRDIVEP 202 (231)
Q Consensus 168 ~-----------~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~ 202 (231)
. +|+++.+ +++++|++ +||| |++.+.++|.
T Consensus 79 Gth~g~~~g~~ptgk~v~~-~~~~~~~~--~~gk--I~e~~~~~D~ 119 (126)
T PF07366_consen 79 GTHTGEFMGIPPTGKPVEF-RGMSIFRF--EDGK--IVEEWVYFDE 119 (126)
T ss_dssp EEESSEBTTBE-TTEEEEE-EEEEEEEE--ETTE--EEEEEEEECH
T ss_pred EeecCCcCCcCCCCCEEEE-EEEEEEEE--ECCE--EEEEEEEECH
Confidence 2 4899999 89999999 8999 9999999974
No 5
>PRK08241 RNA polymerase factor sigma-70; Validated
Probab=99.62 E-value=1.2e-14 Score=132.42 Aligned_cols=114 Identities=17% Similarity=0.232 Sum_probs=92.1
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhc-CCCeEEEEEEEEeCCCCEE
Q 026892 82 DDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSI-SSDLQFVIDDISAEDSSAV 160 (231)
Q Consensus 82 ~~~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~-~~d~~~~i~dvv~~g~~~V 160 (231)
....+++++++||+||++||++++.+|++||++|++|+.+++++|++++++||..++... .+++++.. ...+|+ .|
T Consensus 212 ~~~~~~~~v~~~~~A~~~gD~~~l~~lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~--~~~~g~-~v 288 (339)
T PRK08241 212 DDPEERALLARYVAAFEAYDVDALVALLTEDATWSMPPFPLWYRGRDAIAAFLAGQCPGAGCGGSRLVP--TRANGQ-PA 288 (339)
T ss_pred CChHHHHHHHHHHHHHhcCCHHHHHHHhcCCEEEEcCCCCCcccCHHHHHHHHHhhccccCCCceEEEE--eecCCC-eE
Confidence 445699999999999999999999999999999999988788999999999999864322 34555544 344553 45
Q ss_pred EEEEEEEECCeeEeeeceEEEEEEEeeCCeEEEEEEEEeeCCC
Q 026892 161 GVTWHLEWKGKPFPFSKGCSFYKLEVVNGKRQITYGRDIVEPA 203 (231)
Q Consensus 161 av~w~~~~~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~~ 203 (231)
.+.+.....|+.+.. +++++|++ +||| |+.+++|+|+.
T Consensus 289 ~~~~~~~~~g~~~~~-~~v~v~~v--~dGk--I~~~~~y~d~~ 326 (339)
T PRK08241 289 FAQYMRDPDGGGHRP-WALHVLEL--RGGR--IAHVTSFLDTT 326 (339)
T ss_pred EEEEEEcCCCCeeec-ceEEEEEE--eCCE--EEEEEEEcChh
Confidence 444443445888999 89999999 8999 99999999973
No 6
>PF07858 LEH: Limonene-1,2-epoxide hydrolase catalytic domain; InterPro: IPR013100 Epoxide hydrolases catalyse the hydrolysis of epoxides to corresponding diols, which is important in detoxification, synthesis of signal molecules, or metabolism. Limonene-1,2- epoxide hydrolase (LEH) differs from many other epoxide hydrolases in its structure and its novel one-step catalytic mechanism. Its main fold consists of a six-stranded mixed beta-sheet, with three N-terminal alpha helices packed to one side to create a pocket that extends into the protein core. A fourth helix lies in such a way that it acts as a rim to this pocket. Although mainly lined by hydrophobic residues, this pocket features a cluster of polar groups that lie at its deepest point and constitute the enzymes active site []. ; PDB: 2BNG_C 1NWW_A 1NU3_B.
Probab=99.53 E-value=2e-13 Score=109.44 Aligned_cols=110 Identities=31% Similarity=0.515 Sum_probs=86.3
Q ss_pred cHHHHHHHHHHHHhCCCHHH-HHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCCCEEEE-
Q 026892 85 GGAVVVRRFYAGINGRDLAS-VEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGV- 162 (231)
Q Consensus 85 ~~~~lVr~fydAfN~gDlea-l~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~~~Vav- 162 (231)
++.++|+.|+++|..+|+++ +..++++|++|++.+++ +.+|+++++++++.+. .....+.++++.+.++|+ .|-.
T Consensus 2 ~~~~vV~~F~~a~~~~D~~~a~~~~~~~d~vy~Nvplp-~i~G~~~~~~~l~~~~-~~~~~~e~~i~~iaadg~-~VltE 78 (125)
T PF07858_consen 2 TPEEVVRAFLAALEDRDVDAALASLFDDDAVYHNVPLP-PIRGRDAIRAFLRGFL-DSLSGFEFDIHRIAADGD-VVLTE 78 (125)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHCEECC-EEEETTTE-EEESHHHHHHHHHCCH-CCCEEEEEEEEEEEEETT-EEEEE
T ss_pred ChHHHHHHHHHHHHcCCHHHHHHHhcCCCcEEEeCCCC-CcccHHHHHHHHHHHh-cccceeEEEEEEEeecCC-EEEEE
Confidence 47899999999999999765 67789999999998885 6899999999999763 345678888888887763 4443
Q ss_pred EEE-EEE--CCeeEeeeceEEEEEEEeeCCeEEEEEEEEeeCC
Q 026892 163 TWH-LEW--KGKPFPFSKGCSFYKLEVVNGKRQITYGRDIVEP 202 (231)
Q Consensus 163 ~w~-~~~--~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~ 202 (231)
+.. +.. ++..+.+ ..|.+|++ +||| |+..|||+|.
T Consensus 79 R~D~l~~~dG~~~~~~-~V~GvfEv--~dGk--I~~WRDYFD~ 116 (125)
T PF07858_consen 79 RTDVLRFADGPLRIQF-PVCGVFEV--RDGK--ITLWRDYFDL 116 (125)
T ss_dssp EEEEEEETTTTEEEEE-EEEEEEEE--ETTE--EEEEEEE--H
T ss_pred eEeeeeeecCCeEEEE-EEEEEEEE--ECCE--EEEEeccCCH
Confidence 332 345 4588999 79999999 8999 9999999974
No 7
>TIGR02960 SigX5 RNA polymerase sigma-70 factor, TIGR02960 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building, bidirectional best hits and one-to-a-genome distribution, to represent a conserved family.
Probab=99.50 E-value=4.9e-13 Score=120.65 Aligned_cols=115 Identities=13% Similarity=0.210 Sum_probs=93.0
Q ss_pred CCCCcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhH-hhcCCCeEEEEEEEEeCCCCE
Q 026892 81 GDDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFS-DSISSDLQFVIDDISAEDSSA 159 (231)
Q Consensus 81 ~~~~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~-~~~~~d~~~~i~dvv~~g~~~ 159 (231)
..+..+.+++++||++|++||++++.+|++||++|++|+..+++.|++++..+|..++ ...++++++.. ...+|+ .
T Consensus 201 ~~~~~~~~~v~~~~~a~~~gD~~~l~~Lla~Dv~~~~p~~~~~~~G~~~v~~~~~~~~~~~~~~~~~~~~--~~~~g~-~ 277 (324)
T TIGR02960 201 PPSPEEQDLLERYIAAFESYDLDALTALLHEDAIWEMPPYTLWYQGRPAIVGFIHTVCPGEGAAGMRLLP--TIANGQ-P 277 (324)
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHhcCCeEEEcCCCCcceeCHHHHHHHHHHhcccccCCceeEEE--eeecCC-c
Confidence 3445689999999999999999999999999999999988889999999999999863 23446666644 334553 4
Q ss_pred EEEEEEEEECCeeEeeeceEEEEEEEeeCCeEEEEEEEEeeCCC
Q 026892 160 VGVTWHLEWKGKPFPFSKGCSFYKLEVVNGKRQITYGRDIVEPA 203 (231)
Q Consensus 160 Vav~w~~~~~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~~ 203 (231)
+++.+.....|+.+.. .++++|++ +||| |+.++.|++.+
T Consensus 278 ~~v~~~~~~~~~~~~~-~~v~~~~~--~dGk--I~~~~~~~~~~ 316 (324)
T TIGR02960 278 AAAMYMRRPDAERHTA-FQLHVLEI--RGGR--ITHVTAFLDGP 316 (324)
T ss_pred eEEEEEEcCCCCeeee-eEEEEEEE--cCCc--EEEEEEEcCCH
Confidence 5555654445778888 79999999 7999 99999999865
No 8
>COG3631 Ketosteroid isomerase-related protein [General function prediction only]
Probab=99.47 E-value=8.6e-13 Score=106.86 Aligned_cols=118 Identities=22% Similarity=0.337 Sum_probs=93.2
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCC---CCCccc-CHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCCC
Q 026892 83 DGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLI---FPRPFL-GRKATLDFFKKFSDSISSDLQFVIDDISAEDSS 158 (231)
Q Consensus 83 ~~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~---~~g~~~-GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~~ 158 (231)
.+++.++|+++|+++.+||.+.+.+|+++|++|+-|. ..+.+. |++.++++|..+ ...+....++++.++++++.
T Consensus 3 ~~~~~~~v~~~f~a~~~GD~~~~~~l~a~D~v~~~p~~~~~~~~~~~g~~~~~~~~~~~-~r~~~~~~~~~~~~~~~gD~ 81 (133)
T COG3631 3 EMDNTDLVRRYFAALSRGDLDGLLALLAEDVVWEVPGTPPLSGTFRGGVAIRRDVFALL-PRLIEDGRFTVETVYVSGDP 81 (133)
T ss_pred cchhhhHHHHHHHHHhcCCHHHHHhhccCceEEEeeCCCCCccccccchhhhhHHhhhC-hhhcccccccceEEEEcCCc
Confidence 5678999999999999999999999999999999443 223444 666667888854 34566788899888877654
Q ss_pred EEEEEEEE---EECCeeEeeeceEEEEEEEeeCCeEEEEEEEEeeCCCCCC
Q 026892 159 AVGVTWHL---EWKGKPFPFSKGCSFYKLEVVNGKRQITYGRDIVEPAFKP 206 (231)
Q Consensus 159 ~Vav~w~~---~~~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~~~~p 206 (231)
.+++.|.. ...|+++.. +.+.++++ +||| |+..++|+|+.+.+
T Consensus 82 ~~~v~~~~~~~~~~G~~~~~-~~~~v~~v--rdGr--I~~~~~y~D~~~~~ 127 (133)
T COG3631 82 VGAVFRTRGRVSRTGKPYEN-RYAFVIRV--RDGR--ITRYREYVDTLALA 127 (133)
T ss_pred eEEEEEecCcccccCceeec-ceEEEEEE--eCCE--EEEEEEEechHhHH
Confidence 44444433 446999999 89999999 9999 99999999987643
No 9
>TIGR02246 conserved hypothetical protein. This family consists of uncharacterized proteins found in a number of genera and species, including Streptomyces, Xanthomonas, Oceanobacillus iheyensis, Caulobacter crescentus CB15, and Xylella fastidiosa. The function is unknown.
Probab=99.20 E-value=7.5e-10 Score=85.61 Aligned_cols=110 Identities=11% Similarity=0.062 Sum_probs=74.4
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCC--eEEEEEEEEeCCCCEE
Q 026892 83 DGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSD--LQFVIDDISAEDSSAV 160 (231)
Q Consensus 83 ~~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d--~~~~i~dvv~~g~~~V 160 (231)
....++++.+|+++||++|++++.++|++|++|..+. ++...|+++|+++|+.++...... +++++..+...++..+
T Consensus 3 ~~~i~~l~~~~~~a~~~~D~~~~~~~~~~Da~~~~~~-g~~~~G~~~i~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~A 81 (128)
T TIGR02246 3 ERAIRALVATWEAAWAAGDAEGFADLFTPDGVFVTVP-GQVWKGREAIAAAHEAFLAGPYKGTRVTIDVIEVRFLGPDLA 81 (128)
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHhhCCCceEECCC-CCeecCHHHHHHHHHHHhcccCCCcEEEeeeEEEEecCCCEE
Confidence 3457899999999999999999999999999998543 347899999999999877644333 5555444443332333
Q ss_pred EE--EEEEEEC-Cee----EeeeceEEEEEEEeeCCeEEEEEE
Q 026892 161 GV--TWHLEWK-GKP----FPFSKGCSFYKLEVVNGKRQITYG 196 (231)
Q Consensus 161 av--~w~~~~~-Gk~----i~~~rG~~vfr~d~~dGK~~Iv~~ 196 (231)
.+ .+++... |.. ... +...+++- .+|+|+|+..
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~-~~t~~~~~--~~g~W~I~~~ 121 (128)
T TIGR02246 82 IVHAIQTITAPGKGRARPDAAV-RLTFVAVK--RDGRWLLAAD 121 (128)
T ss_pred EEEEEEEEEcCCCCCCCCCcce-EEEEEEEe--eCCeEEEEec
Confidence 33 3333332 221 122 33445555 5899999875
No 10
>PF13474 SnoaL_3: SnoaL-like domain; PDB: 2GXF_A 3KSP_A 3KE7_A 3BB9_E 3CNX_A 3F7S_A 3GWR_B.
Probab=99.07 E-value=7.2e-09 Score=78.98 Aligned_cols=108 Identities=15% Similarity=0.229 Sum_probs=80.9
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEE--eCCCCEEEE--
Q 026892 87 AVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS--AEDSSAVGV-- 162 (231)
Q Consensus 87 ~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv--~~g~~~Vav-- 162 (231)
.+++++|+++|+.+|++++.++|+||+++.++..+..+.|+++++++|+..+... +.+.++..++- ..++ .+.+
T Consensus 2 ~~~~~~~~~a~~~~D~~~~~~~~~~d~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~~~~~v~~~~~-~a~~~~ 79 (121)
T PF13474_consen 2 EALLEEWIEAFERGDIDALLSLFSDDFVFFGTGPGEIWRGREAIRAYFERDFESF-RPISIEFEDVQVSVSGD-VAVVTG 79 (121)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHEEEEEEEEETTSSSEEESHHHHHHHHHHHHHTH-SEEEEEEEEEEEEEETT-EEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHHhhCCCEEEEcCCCCceECCHHHHHHHHHHHhhhC-ceEEEEEEEEEEEECCC-EEEEEE
Confidence 5789999999999999999999999999998766667889999999999988754 67777776554 3343 3333
Q ss_pred EEEE--EECCee--EeeeceEEEEEEEeeCCeEEEEEEEEe
Q 026892 163 TWHL--EWKGKP--FPFSKGCSFYKLEVVNGKRQITYGRDI 199 (231)
Q Consensus 163 ~w~~--~~~Gk~--i~~~rG~~vfr~d~~dGK~~Iv~~rdy 199 (231)
.+++ ..+|+. ... +...+|+- ++|.|+|+...-.
T Consensus 80 ~~~~~~~~~~~~~~~~~-r~t~v~~k--~~~~Wki~h~H~S 117 (121)
T PF13474_consen 80 EFRLRFRNDGEEIEMRG-RATFVFRK--EDGGWKIVHIHWS 117 (121)
T ss_dssp EEEEEEECTTCEEEEEE-EEEEEEEE--ETTEEEEEEEEEE
T ss_pred EEEEEEecCCccceeeE-EEEEEEEE--ECCEEEEEEEEec
Confidence 3333 224444 445 67888888 7899999987543
No 11
>COG4922 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.04 E-value=3.5e-09 Score=83.33 Aligned_cols=109 Identities=17% Similarity=0.327 Sum_probs=89.0
Q ss_pred CCcHHHHHHHHHH-HHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCCCEEE
Q 026892 83 DGGGAVVVRRFYA-GINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVG 161 (231)
Q Consensus 83 ~~~~~~lVr~fyd-AfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~~~Va 161 (231)
.+.|++++-+||. +|++|.++...+++-|....|+|..+ .|++++.+||.+++.. .|..+..|...+++| +.|.
T Consensus 4 ~~~N~~~v~~~y~~~~~~g~veka~a~~vd~YiQHnp~vp---dGk~~fv~fFt~ffk~-~P~~~~kiVr~iadG-dLV~ 78 (129)
T COG4922 4 LHANKQVVIQFYRTLFEAGEVEKADAYLVDRYIQHNPMVP---DGKDGFVRFFTEFFKE-KPRISTKIVRVIADG-DLVT 78 (129)
T ss_pred hhhhHHHHHHHHHHHHHCCCHHHhhhhhhhHHHhcCCCCC---CchHHHHHHHHHHHHh-CccccceeeEEeccC-CEEE
Confidence 3468889999997 99999999999999999999988654 4999999999999875 587888887777766 4888
Q ss_pred EEEEEEECC-eeEeeeceEEEEEEEeeCCeEEEEEEEEeeC
Q 026892 162 VTWHLEWKG-KPFPFSKGCSFYKLEVVNGKRQITYGRDIVE 201 (231)
Q Consensus 162 v~w~~~~~G-k~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d 201 (231)
+.++-.+++ ..+.. -.+++||+ .||| |+++||...
T Consensus 79 vh~hqt~~~pg~~~~-v~~DtfR~--ddgk--ivEHWDviq 114 (129)
T COG4922 79 VHYHQTVSEPGSYTT-VTFDTFRI--DDGK--IVEHWDVIQ 114 (129)
T ss_pred EEEeeeeCCCCccee-EEEEEEEe--eCCc--eeeccchhh
Confidence 888877765 34444 36899999 6799 999998754
No 12
>COG4319 Ketosteroid isomerase homolog [Function unknown]
Probab=98.97 E-value=1.5e-08 Score=82.23 Aligned_cols=111 Identities=16% Similarity=0.214 Sum_probs=85.7
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEE--eCCCCEEE
Q 026892 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS--AEDSSAVG 161 (231)
Q Consensus 84 ~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv--~~g~~~Va 161 (231)
...++++..|-+|+|++|+++++++|+||+++.++. +.+..|+++|+++|+..+.......+|+.+++. +.|+...+
T Consensus 10 ~~I~a~i~dw~~Av~a~D~~av~~~YtdDav~f~~~-~~~~~Gk~~i~k~~~~~~~~~~~~~~f~~~el~v~~~GD~a~~ 88 (137)
T COG4319 10 DAIRAAIADWAAAVRAKDADAVADFYTDDAVVFPPP-GLQRKGKAAIRKAFEGIFAMGIGPLKFTLEELQVHESGDVAFV 88 (137)
T ss_pred HHHHHHHHHHHHHHhcccHHHHHHhcCCceEEecCC-CCcccCHHHHHHHHHHHHHhccCCCcceeeeeeeeccCCEEEE
Confidence 556778888888999999999999999999999886 557899999999999988776677888887776 66654444
Q ss_pred E-EEEEEE--C-Cee--EeeeceEEEEEEEeeCCeEEEEEEE
Q 026892 162 V-TWHLEW--K-GKP--FPFSKGCSFYKLEVVNGKRQITYGR 197 (231)
Q Consensus 162 v-~w~~~~--~-Gk~--i~~~rG~~vfr~d~~dGK~~Iv~~r 197 (231)
. .+++.. + |+. +.. |...+||=+. ||.|+|+..-
T Consensus 89 ~~~~~~~~~~~dg~~~~~~~-Rat~v~rK~~-dg~Wk~~~dh 128 (137)
T COG4319 89 TALLLLTGTKKDGPPADLAG-RATYVFRKEA-DGGWKLAHDH 128 (137)
T ss_pred EEeeeeeccCCCCcchhhee-eeEEEEEEcC-CCCEEEEEec
Confidence 3 555543 2 443 445 6788888864 7788887753
No 13
>PRK09636 RNA polymerase sigma factor SigJ; Provisional
Probab=98.95 E-value=1.9e-08 Score=90.30 Aligned_cols=108 Identities=19% Similarity=0.229 Sum_probs=76.0
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcC------CCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCC
Q 026892 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDL------IFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDS 157 (231)
Q Consensus 84 ~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp------~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~ 157 (231)
..+.+++++|++||++||++++.+|++||++|+.. +..+++.|+++|.+||..++....+...+....+..+|+
T Consensus 171 ~~~~~~v~~f~~A~~~gD~~~l~~Lla~Dv~~~~dggg~~~~~~~~~~G~~~v~~~l~~~~~~~~~~~~~~~~~~~vnG~ 250 (293)
T PRK09636 171 EEGAELVEAFFAALASGDLDALVALLAPDVVLHADGGGKVPTALRPIYGADKVARFFLGLARRYGPGGSTLVRLALVNGL 250 (293)
T ss_pred hHHHHHHHHHHHHHHhCCHHHHHHHHhhCeEEEecCCCccCCCCccccCHHHHHHHHHHHhhhccCCCceEEEEEEECCc
Confidence 35788999999999999999999999999999942 223568999999999998765432323333333445554
Q ss_pred CEEEEEEEEEECCeeEeeeceEEEEEEEeeCCeEEEEEEEEeeCCC
Q 026892 158 SAVGVTWHLEWKGKPFPFSKGCSFYKLEVVNGKRQITYGRDIVEPA 203 (231)
Q Consensus 158 ~~Vav~w~~~~~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~~ 203 (231)
..+.+ . ..|+. .++..+.+ +||| |+.+..+.+|.
T Consensus 251 ~a~~~-~---~~~~~----~~~~~~~~--~~g~--I~~i~~~~~p~ 284 (293)
T PRK09636 251 PGFVT-A---EADGE----PQTTALEV--EDGK--IVAIYDVRNPD 284 (293)
T ss_pred eeEEE-E---eCCce----EEEEEEEE--ECCE--EEEEEEEcCHH
Confidence 44433 1 12333 24566778 7898 99988887664
No 14
>PF14534 DUF4440: Domain of unknown function (DUF4440); PDB: 3HX8_A 3SOY_A 3ROB_B 3GZR_A 3B7C_A 3CU3_A 3FSD_A 2R4I_C 1TP6_A.
Probab=98.86 E-value=3.8e-08 Score=72.93 Aligned_cols=101 Identities=26% Similarity=0.397 Sum_probs=72.8
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCCCEEEE-EEE
Q 026892 87 AVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGV-TWH 165 (231)
Q Consensus 87 ~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~~~Vav-~w~ 165 (231)
.++.++|.+|++++|++++.++|+||+++..+. ++..|++++.+.+..... ....+++....+...++..+.. .|+
T Consensus 2 ~a~~~~~~~A~~~~D~~~~~~~~~~d~~~~~~~--g~~~~~~~~l~~~~~~~~-~~~~~~~~~~~v~~~gd~a~~~~~~~ 78 (107)
T PF14534_consen 2 RALEEQYEDAFNAGDIDALASLYADDFVFVGPG--GTILGKEAILAAFKSGFA-RFSSIKFEDVEVRVLGDTAVVRGRWT 78 (107)
T ss_dssp HHHHHHHHHHHHTTHHHHHHTTEEEEEEEEETT--SEEEEHHHHHHHHHHHCE-EEEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred HHHHHHHHHHHHhCCHHHHHhhhCCCEEEECCC--CCEeCHHHHHHHHhhccC-CCceEEEEEEEEEEECCEEEEEEEEE
Confidence 578999999999999999999999999998664 455699999998886332 2355566655554444333332 666
Q ss_pred EEEC--Cee--EeeeceEEEEEEEeeCCeEEE
Q 026892 166 LEWK--GKP--FPFSKGCSFYKLEVVNGKRQI 193 (231)
Q Consensus 166 ~~~~--Gk~--i~~~rG~~vfr~d~~dGK~~I 193 (231)
++.. |.. ... +...+|+- ++|+|+|
T Consensus 79 ~~~~~~g~~~~~~~-~~~~v~~k--~~g~W~i 107 (107)
T PF14534_consen 79 FTWRGDGEPVTIRG-RFTSVWKK--QDGKWRI 107 (107)
T ss_dssp EEETTTTEEEEEEE-EEEEEEEE--ETTEEEE
T ss_pred EEEecCCceEEEEE-EEEEEEEE--eCCEEEC
Confidence 6553 533 455 67889988 7899987
No 15
>COG4308 LimA Limonene-1,2-epoxide hydrolase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=98.84 E-value=1.2e-08 Score=80.77 Aligned_cols=110 Identities=22% Similarity=0.283 Sum_probs=83.6
Q ss_pred cHHHHHHHHHHHHhCCCHHH-HHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCCCEEEE-
Q 026892 85 GGAVVVRRFYAGINGRDLAS-VEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGV- 162 (231)
Q Consensus 85 ~~~~lVr~fydAfN~gDlea-l~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~~~Vav- 162 (231)
.+.++|+.|..|+..-|.++ +..++.+|-+|.+++.+ +.+|.++.+++++..|... -.++|.|..+..+|. .|-.
T Consensus 7 ~pi~~V~aF~aA~~~~d~~~avr~~~~~d~v~~n~gis-~i~G~~~~ia~l~~~~~~~-~~~ef~I~riAadg~-~VltE 83 (130)
T COG4308 7 EPIRTVEAFLAALQEDDGDAAVRRLGTPDTVYNNVGIS-TIHGPAETIALLRPRMAGI-LGFEFKILRIAADGG-AVLTE 83 (130)
T ss_pred CcHHHHHHHHHHHHhcCccHHHHHhcCCCeeeccCCcc-cccchhhhhhhhccccCCc-ceeEEEEEEEecccc-eehhh
Confidence 47889999999999999888 55566688899888775 6889999999999655433 457888887776663 3322
Q ss_pred EEEEEE-CCeeEeeeceEEEEEEEeeCCeEEEEEEEEeeCC
Q 026892 163 TWHLEW-KGKPFPFSKGCSFYKLEVVNGKRQITYGRDIVEP 202 (231)
Q Consensus 163 ~w~~~~-~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~ 202 (231)
+..... +.....+ ..|.+|++ +||| |+++|||+|-
T Consensus 84 R~D~~~~g~~~~~~-~V~GvfEV--~~~r--I~~WRDYFDv 119 (130)
T COG4308 84 RLDARIDGPLWVQF-WVCGVFEV--EDGR--IVLWRDYFDV 119 (130)
T ss_pred hhhhhccCCcEEEE-EEEEEEEE--eCCE--EEeehhhhhH
Confidence 333222 3346778 69999999 8999 9999999974
No 16
>cd00531 NTF2_like Nuclear transport factor 2 (NTF2-like) superfamily. This family includes members of the NTF2 family, Delta-5-3-ketosteroid isomerases, Scytalone Dehydratases, and the beta subunit of Ring hydroxylating dioxygenases. This family is a classic example of divergent evolution wherein the proteins have many common structural details but diverge greatly in their function. For example, nuclear transport factor 2 (NTF2) mediates the nuclear import of RanGDP and binds to both RanGDP and FxFG repeat-containing nucleoporins while Ketosteroid isomerases catalyze the isomerization of delta-5-3-ketosteroid to delta-4-3-ketosteroid, by intramolecular transfer of the C4-beta proton to the C6-beta position. While the function of the beta sub-unit of the Ring hydroxylating dioxygenases is not known, Scytalone Dehydratases catalyzes two reactions in the biosynthetic pathway that produces fungal melanin. Members of the NTF2-like superfamily are widely distributed among bacteria, archaea
Probab=98.74 E-value=8.7e-07 Score=65.99 Aligned_cols=113 Identities=21% Similarity=0.218 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCC---CCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEE--eCCCC---
Q 026892 87 AVVVRRFYAGINGRDLASVEELIADDCVYEDLIF---PRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS--AEDSS--- 158 (231)
Q Consensus 87 ~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~---~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv--~~g~~--- 158 (231)
++++.+|+.+++.+|.+.+..|++||++++.+.. .....|+++|+++++.+... .+...+.+..+. ..++.
T Consensus 2 ~~l~~~y~~~ld~~~~~~l~~~~~~d~~~~~~~~~~~~~~~~g~~~i~~~~~~~~~~-~~~~~h~~~~~~~~~~~~~~~~ 80 (124)
T cd00531 2 EQFLYRYARLLDAGDREWLALLYADDAYFEPPGGDGLIYPDDGREAIEDRVRRLPFG-PSRTRHLVSNVDVQPGDDGEGV 80 (124)
T ss_pred HHHHHHHHHHhCCchHHHHHhhCcCcEEEEEccCCEEEEcCChHHHHHHHHHhcCCC-CCceEEEEEeEEEEeCCCCEEE
Confidence 5789999999999999999999999999987763 25789999999999976431 122222222222 22221
Q ss_pred EEEEEEEEEEC--CeeEeeeceEEEEEEEeeCCeEEEEEEEEeeC
Q 026892 159 AVGVTWHLEWK--GKPFPFSKGCSFYKLEVVNGKRQITYGRDIVE 201 (231)
Q Consensus 159 ~Vav~w~~~~~--Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d 201 (231)
.+.+.|.+... |..... .+...+++...+|.|+|..-+.+++
T Consensus 81 ~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~g~w~i~~~~~~~~ 124 (124)
T cd00531 81 VVSVFGVLRTRGDGEQDVF-AGGQTFVLRPQGGGGKIANRRFRLD 124 (124)
T ss_pred EEEEEEEEEEccCCceeEE-EEEEEEEEEEeCCEEEEEEEEEecC
Confidence 12224444443 346666 5777666654578788988776653
No 17
>COG5485 Predicted ester cyclase [General function prediction only]
Probab=98.61 E-value=3.3e-07 Score=72.97 Aligned_cols=102 Identities=19% Similarity=0.297 Sum_probs=80.5
Q ss_pred HHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCCCEEEEEEEE-
Q 026892 88 VVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTWHL- 166 (231)
Q Consensus 88 ~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~~~Vav~w~~- 166 (231)
+.++.|++..|..+++.+......++.+ + +...|.+++++++.+.|. .+||++|+++.++++++ .|+.+.++
T Consensus 10 ~~y~Ay~d~ln~q~~~~l~~fv~~~v~~-n----g~~~glsgyr~ml~~df~-aiPdl~f~ie~lvae~~-~vaarl~Fd 82 (131)
T COG5485 10 DRYRAYLDCLNRQAWDELGSFVDGNVMH-N----GRLQGLSGYREMLVRDFS-AIPDLSFEIERLVAEGD-RVAARLTFD 82 (131)
T ss_pred HHHHHHHHhhhhhhhhhcccCCcCeeee-C----CceechHHHHHHHHhhHh-hCCCcceEEEEEeecCC-ceEEEEEEc
Confidence 7889999999999998887766655443 2 356799999999998775 57999999999997774 66665554
Q ss_pred -E---------ECCeeEeeeceEEEEEEEeeCCeEEEEEEEEeeC
Q 026892 167 -E---------WKGKPFPFSKGCSFYKLEVVNGKRQITYGRDIVE 201 (231)
Q Consensus 167 -~---------~~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d 201 (231)
+ -+||++.| .-..+++| .||| |+++|...|
T Consensus 83 ctp~G~i~Gip~nGkrV~F-se~vfy~f--~~~K--I~~vwsv~D 122 (131)
T COG5485 83 CTPSGEIMGIPPNGKRVRF-SENVFYEF--ENGK--IVEVWSVID 122 (131)
T ss_pred cCcCceEeccCCCCcEEEe-ehhhhhhh--cCCe--EEeeehhcc
Confidence 1 15999999 58889999 8999 888876553
No 18
>TIGR02957 SigX4 RNA polymerase sigma-70 factor, TIGR02957 family. This group of sigma factors are members of the sigma-70 family (TIGR02937). They and appear by homology, tree building and bidirectional best hits, to represent a conserved family. This family is found in a limited number of bacterial lineages. This family includes apparent paralogous expansion in Streptomyces coelicolor A3(2), and multiple copies in Mycobacterium smegmatis MC2, Streptomyces avermitilis MA-4680 and Nocardia farcinica IFM10152.
Probab=98.56 E-value=2.3e-06 Score=76.59 Aligned_cols=106 Identities=21% Similarity=0.231 Sum_probs=75.4
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEc------CCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCC
Q 026892 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYED------LIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDS 157 (231)
Q Consensus 84 ~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~d------p~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~ 157 (231)
....+++++|.+|++.||++++.+|++||+++.. |....++.|++.|..||........++..+.. ...+|.
T Consensus 164 ~~~~~~~~~f~~a~~~gD~~~l~~lL~~dv~~~~dggg~~~~~~~p~~G~~~v~~~~~~~~~~~~~~~~~~~--~~vnG~ 241 (281)
T TIGR02957 164 EESRQLLERFVEAAQTGDLDGLLELLAEDVVLYGDGGGKVRAALRPIYGADRVARFFFGLVRRLGPGGRVDP--VDVNGQ 241 (281)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHhhceEEEecCCCcCCCCCcccccHHHHHHHHHHHhcccCCCceEEE--EEECCC
Confidence 3467899999999999999999999999999984 44556799999999999876543223444333 334564
Q ss_pred CEEEEEEEEEECCeeEeeeceEEEEEEEeeCCeEEEEEEEEeeCCC
Q 026892 158 SAVGVTWHLEWKGKPFPFSKGCSFYKLEVVNGKRQITYGRDIVEPA 203 (231)
Q Consensus 158 ~~Vav~w~~~~~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~~ 203 (231)
..+.+ + ..|+.. ++..+++ .||| |..+.-+.+|.
T Consensus 242 p~~~~-~---~~~~~~----~~~~~~~--~~g~--I~~i~~~~nP~ 275 (281)
T TIGR02957 242 PAVLV-R---IDGKLA----YVVTFAI--EGGG--IQNIYIVRNPE 275 (281)
T ss_pred ceEEE-E---eCCcEE----EEEEEEE--ECCE--EEEEEEEcCHH
Confidence 33332 1 244432 4566688 6898 88888877764
No 19
>PF08332 CaMKII_AD: Calcium/calmodulin dependent protein kinase II Association; InterPro: IPR013543 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain is found at the C terminus of the Calcium/calmodulin dependent protein kinases II (CaMKII). These proteins also have a Ser/Thr protein kinase domain (IPR000719 from INTERPRO) at their N terminus []. The function of the CaMKII association domain is the assembly of the single proteins into large (8 to 14 subunits) multimers [] and is a prominent kinase in the central nervous system that may function in long-term potentiation and neurotransmitter release. ; GO: 0004683 calmodulin-dependent protein kinase activity, 0005516 calmodulin binding, 0006468 protein phosphorylation; PDB: 2W2C_F 3H51_B 3SOA_A 2UX0_A 1HKX_M 2F86_B.
Probab=98.39 E-value=2.1e-05 Score=63.46 Aligned_cols=111 Identities=18% Similarity=0.215 Sum_probs=76.8
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCC-eEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEE---EeCCCCEE
Q 026892 85 GGAVVVRRFYAGINGRDLASVEELIADD-CVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDI---SAEDSSAV 160 (231)
Q Consensus 85 ~~~~lVr~fydAfN~gDleal~~L~A~D-vV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dv---v~~g~~~V 160 (231)
+..++.++|.+|++.||++.+.++|+|| .++.....+....|.+.++.||+.++.......+-.|..- +-+++ .+
T Consensus 4 eI~~l~~~w~~ai~tgD~~~~~~ly~~d~av~~Pt~s~~~~~g~~~~~~YF~~~l~~~~~~~~~tI~~p~V~~lg~~-~A 82 (128)
T PF08332_consen 4 EIAALFDRWNDAIQTGDPETYAKLYAPDVAVFEPTVSNQLREGLEFHKFYFDHFLAKKPQGVNTTILNPHVRLLGDN-AA 82 (128)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHHHHEEEEEEEEEGGGTTSEEESCHHHHHHHHHTGTTTSSCEEEEEEEEEEEEESTT-EE
T ss_pred HHHHHHHHHHHHHHcCCHHHHhhhcCCCeeEeccccCCceecChHHHHHHHhcccccCCCceeeEecCCeEEEcCCC-EE
Confidence 4577889999999999999999999999 6766445556789999999999987765444444444222 12443 33
Q ss_pred EE--EEEEEE---CCee--EeeeceEEEEEEEeeCCeEEEEEEEEe
Q 026892 161 GV--TWHLEW---KGKP--FPFSKGCSFYKLEVVNGKRQITYGRDI 199 (231)
Q Consensus 161 av--~w~~~~---~Gk~--i~~~rG~~vfr~d~~dGK~~Iv~~rdy 199 (231)
.+ .+.+.+ .|.+ ... +..-+|+- .+|+|+|+.+--.
T Consensus 83 i~~gvy~f~~~d~~G~~~~~~a-reT~v~~~--~~g~W~ivhhHsS 125 (128)
T PF08332_consen 83 IDAGVYTFQFVDKDGVPRTVQA-RETRVWQK--RDGKWKIVHHHSS 125 (128)
T ss_dssp EEEEEEEEEEESTTSSEEEEEE-EEEEEEEE--ETTEEEEEEEEEE
T ss_pred EEeeEEEEEeecCCCCeeeEEE-eEEEEEEE--eCCeEEEEEEecC
Confidence 33 233333 3554 345 67788888 7999999987543
No 20
>PF10184 DUF2358: Uncharacterized conserved protein (DUF2358); InterPro: IPR018790 This entry represents a family of conserved proteins. The function is unknown.
Probab=98.39 E-value=1.2e-05 Score=63.05 Aligned_cols=90 Identities=22% Similarity=0.317 Sum_probs=69.1
Q ss_pred CCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHH---HHHhHhhcCCCeEEEEEEEEeCCCCEEEEEEEEEEC-----C
Q 026892 99 GRDLASVEELIADDCVYEDLIFPRPFLGRKATLDF---FKKFSDSISSDLQFVIDDISAEDSSAVGVTWHLEWK-----G 170 (231)
Q Consensus 99 ~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~---f~~~~~~~~~d~~~~i~dvv~~g~~~Vav~w~~~~~-----G 170 (231)
.++.+ .++|+|||++.||.. .+.|.+.++.. ++-+....+.+.++++.++...++..+.++|++... +
T Consensus 16 ~~~~~--~~iY~~dv~F~Dp~~--~f~g~~~Y~~~~~~l~~l~~~~~~~~~~~v~~i~~~~~~~I~~rW~~~g~~~l~w~ 91 (113)
T PF10184_consen 16 TGDLD--YSIYDEDVVFIDPIV--SFKGLDRYKRNLWALRFLGRLFFSDPSLEVLSIEQDGEDTIRARWRLRGVPRLPWR 91 (113)
T ss_pred cCCCC--hhhcCCCeEEECCCC--ceecHHHHHHHHHHHHHHHhhccCCcEEEEEEEEECCCCEEEEEEEEEEEeCCCcC
Confidence 55554 569999999999975 68999999988 554333356889999999986665577789998541 5
Q ss_pred eeEeeeceEEEEEEEeeCCeEEEEEE
Q 026892 171 KPFPFSKGCSFYKLEVVNGKRQITYG 196 (231)
Q Consensus 171 k~i~~~rG~~vfr~d~~dGK~~Iv~~ 196 (231)
..+.+ .|.+.|++|+ +|| |..|
T Consensus 92 p~~~~-~G~S~~~ln~-~g~--I~~H 113 (113)
T PF10184_consen 92 PRISF-DGTSTYTLNS-DGL--IYRH 113 (113)
T ss_pred CcEEE-EEEEEEEECC-CCc--EEeC
Confidence 57788 7999999984 898 7653
No 21
>PF13577 SnoaL_4: SnoaL-like domain; PDB: 3S5C_B 3EJV_A 2RFR_A 3B8L_F 2CHC_A 3A76_A 3EF8_B.
Probab=98.37 E-value=2.1e-05 Score=60.39 Aligned_cols=111 Identities=14% Similarity=0.181 Sum_probs=72.1
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCC-CCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEE-eCCCCEEE
Q 026892 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF-PRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSAVG 161 (231)
Q Consensus 84 ~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~-~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv-~~g~~~Va 161 (231)
...++++.+|..+++.+|++.+.++|++|+++.-++. .+.+.|+++|.++++..+.......++....++ .++ +.+.
T Consensus 7 ~~I~~l~~~~~~~~D~~~~~~~~~lft~d~~~~~~~~~~~~~~G~~~i~~~~~~~~~~~~~~~H~~~~~~v~~dg-d~A~ 85 (127)
T PF13577_consen 7 AAIRDLIARYARALDTGDWEEWADLFTEDAVFDFPGFGFGRYRGRDAIRAFLRARFDGFAATRHMVTNPVVDVDG-DTAT 85 (127)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHTTEEEEEEEEETTTCEEEEESHHHHHHHHHHHHHHEEEEEEEEEEEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHhhCCCHHHHHhccCCcEEEEEeCccccccCCHHHHHHHHHHhcccccceeEEccceEEEEcC-CEEE
Confidence 4567888899999999999999999999999986654 467899999999999876543322223222222 233 3444
Q ss_pred EEEEEEE------CCe-eEee-eceEEEEEEEeeCCeEEEEEEE
Q 026892 162 VTWHLEW------KGK-PFPF-SKGCSFYKLEVVNGKRQITYGR 197 (231)
Q Consensus 162 v~w~~~~------~Gk-~i~~-~rG~~vfr~d~~dGK~~Iv~~r 197 (231)
+++.+.. .|. .+.. .+..+-|.. +||.|+|.+.+
T Consensus 86 ~~~~~~~~~~~~~~g~~~~~~~g~y~~~~~r--~~g~W~i~~~~ 127 (127)
T PF13577_consen 86 VRSYVLATHRDPDDGEPALWSGGRYTDELVR--EDGGWRISSRT 127 (127)
T ss_dssp EEEEEEEEEEEETTTEEEEEEEEEEEEEEEE--ETTEEEEEEEE
T ss_pred EEEEEEEEEEEcCCCceEEEEEEEEEEEEEE--ECCEEEEEEEC
Confidence 4444421 233 2222 234445555 68999998753
No 22
>COG4538 Uncharacterized conserved protein [Function unknown]
Probab=98.26 E-value=2.7e-05 Score=59.93 Aligned_cols=104 Identities=17% Similarity=0.051 Sum_probs=70.2
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCCCEEEE-E
Q 026892 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGV-T 163 (231)
Q Consensus 85 ~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~~~Vav-~ 163 (231)
..+.++++=.+|+|++|++++...|++|+++...+.-.-.-|.++|++++.+.|.. |+.+..+.+.+.-|+ +++ +
T Consensus 4 e~ed~vq~Ql~AYNa~Dvdaf~a~f~DD~vv~~f~a~~~~gg~aaira~y~e~FaE--p~~~~~ll~Rv~vGs--~ViDH 79 (112)
T COG4538 4 EPEDVVQRQLAAYNAGDVDAFAAEFDDDAVVTTFDALDGDGGTAAIRAAYGEQFAE--PAPEISLLDRVSVGS--YVIDH 79 (112)
T ss_pred chhHHHHHHHHhhccccHHHHHhhcccceEEEecccccccCcHHHHHHHHHHHhcC--CCccceeeeeEEecc--EEecc
Confidence 46788999999999999999999999999997432211234999999988877755 555666554443342 223 4
Q ss_pred EEEEECCeeEeeeceEEEEEEEeeCCeEEEEEEE
Q 026892 164 WHLEWKGKPFPFSKGCSFYKLEVVNGKRQITYGR 197 (231)
Q Consensus 164 w~~~~~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~r 197 (231)
-+.+.....-++ ...-+|++ ++|| |.+.+
T Consensus 80 Ehvtr~~g~ge~-dvaciYtv--~~g~--Iar~w 108 (112)
T COG4538 80 EHVTRGTGGGER-DVACIYTV--VEGL--IARLW 108 (112)
T ss_pred eeeccCCCCCce-eEEEEEEE--eCCe--eeeee
Confidence 444432122244 45689999 8999 55443
No 23
>PRK09635 sigI RNA polymerase sigma factor SigI; Provisional
Probab=98.23 E-value=2.2e-05 Score=71.05 Aligned_cols=103 Identities=18% Similarity=0.111 Sum_probs=73.4
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcC-CCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCCCEEEE
Q 026892 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDL-IFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGV 162 (231)
Q Consensus 84 ~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp-~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~~~Vav 162 (231)
....+++++|.+|++.||++++.+|++||++...+ +...++.|++.|..||..... .+...+.. ...+|...+.+
T Consensus 174 ~~~~~~~~~f~~a~~~gd~~~l~~ll~~d~~~~~~~~~~~~~~G~~~v~~~~~~~~~--~~~~~~~~--~~~ng~p~~~~ 249 (290)
T PRK09635 174 AQHRVVTRAFIEACSNGDLDTLLEVLDPGVAGEIDARKGVVVVGADRVGPTILRHWS--HPATVLVA--QPVCGQPAVLA 249 (290)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHhhhhhcCCCcCCCCccccCHHHHHHHHHHhhc--cCceEEEE--eeeCCCceEEE
Confidence 35678999999999999999999999999986544 445688999999999986532 24444433 33466433332
Q ss_pred EEEEEECCeeEeeeceEEEEEEEeeCCeEEEEEEEEeeCC
Q 026892 163 TWHLEWKGKPFPFSKGCSFYKLEVVNGKRQITYGRDIVEP 202 (231)
Q Consensus 163 ~w~~~~~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~ 202 (231)
+ ..|+. .++.++++ .||| |+.+.-+.+|
T Consensus 250 -~---~~~~~----~~~~~~~~--~~~~--I~~i~~~~np 277 (290)
T PRK09635 250 -F---VNRAL----AGVLALSI--EAGK--ITKIHVLVQP 277 (290)
T ss_pred -E---eCCce----EEEEEEEE--ECCE--EEEEEEEcCH
Confidence 1 23432 35688888 7898 8887777655
No 24
>PF03284 PHZA_PHZB: Phenazine biosynthesis protein A/B; InterPro: IPR004964 The phenazine biosynthesis proteins A and B are involved in the biosynthesis of this antibiotic. Phenazine is a nitrogen-containing heterocyclic molecule with important implications in virulence, competition and biological control.; GO: 0017000 antibiotic biosynthetic process; PDB: 3EX9_A 3JUP_B 3DZL_A 3JUN_A 3JUO_A 3CNM_A 3JUM_B 3JUQ_A 3B4O_A 3B4P_B ....
Probab=98.07 E-value=8.4e-05 Score=61.03 Aligned_cols=113 Identities=19% Similarity=0.165 Sum_probs=78.7
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEE----cCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeC-CCCE
Q 026892 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYE----DLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAE-DSSA 159 (231)
Q Consensus 85 ~~~~lVr~fydAfN~gDleal~~L~A~DvV~~----dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~-g~~~ 159 (231)
.|.+.|.+|.. -...|-=.--+||++|-.-- +.+.|-.+.|++.+.++..... .+|||++|.-..+++. |...
T Consensus 19 ~NR~~Ve~Ym~-t~g~~RL~Rh~LF~eDG~~glwtTdtG~Piv~~G~~~L~~havwsl-kcFPDWeW~nv~ifeT~DP~~ 96 (162)
T PF03284_consen 19 INRATVEQYMN-TKGQDRLRRHELFTEDGCGGLWTTDTGEPIVIRGRDRLAEHAVWSL-KCFPDWEWYNVRIFETQDPNH 96 (162)
T ss_dssp HHHHHHHHHHC---GGGGGGGGGGEEEEEEEEESS-TTSS-EEEESHHHHHHHHHHHH-HHSTT-EEEEEEEEEBSSTTE
T ss_pred hhHHHHHHHHH-cCchhhhhhheeeccCCccccccCCCCceEEEEhHHHHHHHHHHHH-HHCCCcEEEEEEeecccCCCE
Confidence 56777777765 22223223457899998653 4555667899999999888654 5899999998888854 4456
Q ss_pred EEEEEEEE----ECC---eeEeeeceEEEEEEEeeCCeEEEEEEEEeeCCCC
Q 026892 160 VGVTWHLE----WKG---KPFPFSKGCSFYKLEVVNGKRQITYGRDIVEPAF 204 (231)
Q Consensus 160 Vav~w~~~----~~G---k~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~~~ 204 (231)
+-|+-.+. +.| ..+++ +.++.|++ +||| |+..|+|++|..
T Consensus 97 fwVEcdG~G~i~fpGypeg~y~N-HfiHsFel--~nGk--I~~~REFmNp~q 143 (162)
T PF03284_consen 97 FWVECDGRGKILFPGYPEGYYEN-HFIHSFEL--ENGK--IKRNREFMNPFQ 143 (162)
T ss_dssp EEEEEEEEEEE--TTS--EEEEE-EEEEEEEE--ETTE--EEEEEEEE-HHH
T ss_pred EEEEecCccceecCCCCccccee-eeEEEEEe--eCCE--EEeehhhcCHHH
Confidence 66655553 234 35888 79999999 7999 999999998754
No 25
>PF12893 Lumazine_bd_2: Putative lumazine-binding; PDB: 3BLZ_C 3DUK_F 3FKA_C.
Probab=98.04 E-value=0.00013 Score=56.64 Aligned_cols=105 Identities=12% Similarity=0.113 Sum_probs=70.1
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCC-CCcccCHHHHHHHHHHhH--hhcCCCeEEEEEEEEeCCCCEEE
Q 026892 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIF-PRPFLGRKATLDFFKKFS--DSISSDLQFVIDDISAEDSSAVG 161 (231)
Q Consensus 85 ~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~-~g~~~GrdaI~a~f~~~~--~~~~~d~~~~i~dvv~~g~~~Va 161 (231)
..+++|+.|++++..||.+.+.++|+||+.+..... .......+++.+++.... .....+....+..+-..| ..+.
T Consensus 5 ~I~~~v~~Y~dg~~~gD~~~l~~~f~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~i~~i~i~g-~~A~ 83 (116)
T PF12893_consen 5 AIEATVQDYFDGLYNGDSEKLRSAFHPDARLQGVRKGKLRTMPIEEFIARVKSRVSPKPPGQERKESILSIDIDG-DVAS 83 (116)
T ss_dssp HHHHHHHHHHHHHHHT-HHHHGGGEEEEEEEEEEETTEEEEEETHHHHHHHHHC---H-SSTT-EEEEEEEEEET-TEEE
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHhhCCCcEEEEEcCCceEEeCHHHHHHHHHhhccccCCCCCceeEEEEEEEEC-CEEE
Confidence 467899999999999999999999999998864331 124567788888887532 234456667766554455 3555
Q ss_pred EEEEEEECCeeEeeeceEEEEEEEeeCCeEEEEE
Q 026892 162 VTWHLEWKGKPFPFSKGCSFYKLEVVNGKRQITY 195 (231)
Q Consensus 162 v~w~~~~~Gk~i~~~rG~~vfr~d~~dGK~~Iv~ 195 (231)
++..+++.+..+. ....+++. ||+|+|+.
T Consensus 84 a~v~~~~~~~~~~--d~~~L~K~---dg~WkIv~ 112 (116)
T PF12893_consen 84 AKVEYEFPGFWFV--DYFTLVKT---DGGWKIVS 112 (116)
T ss_dssp EEEEEEEETEEEE--EEEEEEEE---TTEEEEEE
T ss_pred EEEEEEECCCceE--EEEEEEEE---CCEEEEEE
Confidence 5556555544332 35666666 89999986
No 26
>PF02136 NTF2: Nuclear transport factor 2 (NTF2) domain; InterPro: IPR002075 Nuclear transport factor 2 (NTF2) is a homodimer which stimulates efficient nuclear import of a cargo protein. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins. NTF2 folds into a cone with a deep hydrophobic cavity, the opening of which is surrounded by several negatively charged residues. RanGDP binds to NTF2 by inserting a conserved phenylalanine residue into the hydrophobic pocket of NTF2 and making electrostatic interactions with the conserved negatively charged residues that surround the cavity []. This entry represent the main structural domain of NTF2 and related domains which are found in other nuclear import proteins.; GO: 0006810 transport, 0005622 intracellular; PDB: 3UJM_B 1JKG_B 1JN5_B 1M98_A 3MG1_A 3MG2_A 3MG3_B 2Z76_A 2Z7A_D 2Z77_A ....
Probab=97.78 E-value=0.00062 Score=52.30 Aligned_cols=104 Identities=20% Similarity=0.334 Sum_probs=66.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeC----CCCEEE
Q 026892 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAE----DSSAVG 161 (231)
Q Consensus 86 ~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~----g~~~Va 161 (231)
..+.+++||++++++|.+.+.++|++|.....+.......|+++|.++|..+-. ...++.+..+-.. .+..+.
T Consensus 2 ~~~Fv~~Yy~~~d~~~~~~L~~~Y~~~~s~~~~~~~~~~~G~~~I~~~~~~l~~---~~~~~~i~~~d~qp~~~~~~~i~ 78 (118)
T PF02136_consen 2 ANSFVQQYYQLFDSGDREGLHKLYHDDASFLTWNGNRPVVGREAIQEFFQSLPA---TGVQHRITSVDCQPSPSSDGSIL 78 (118)
T ss_dssp HHHHHHHHHHHHHHTHGGGGGGGEEEEEEEEEETTECEEESHHHHHHHHHHHTT---SSEEEEEEEEEEEEEEECCSEEE
T ss_pred HHHHHHHHHHHHccCCHHHHHHHHcCCCeeecCCCchhhhhHHHHHHHHhcCCC---cccEEEecccccccccccCCcEE
Confidence 356899999999999999999999888887766543468999999999997533 2235555433322 223444
Q ss_pred EEE--EEEECCeeEeeeceEEEEEEEeeCCeEEE
Q 026892 162 VTW--HLEWKGKPFPFSKGCSFYKLEVVNGKRQI 193 (231)
Q Consensus 162 v~w--~~~~~Gk~i~~~rG~~vfr~d~~dGK~~I 193 (231)
+.. .+..++.+-.. +....|-+.+.++.+-|
T Consensus 79 i~v~G~~~~~~~~~~~-~F~q~FvL~~~~~~~~I 111 (118)
T PF02136_consen 79 ITVTGQFKEDDNPNPR-RFSQTFVLVPQNNGYFI 111 (118)
T ss_dssp EEEEEEEEETTSEEEE-EEEEEEEEEEETTEEEE
T ss_pred EEEEeEEEecCCCccc-EEEEEEEEEEcCCEEEE
Confidence 433 44444443112 34556666544455333
No 27
>PF07080 DUF1348: Protein of unknown function (DUF1348); InterPro: IPR009783 This family consists of several highly conserved hypothetical proteins of around 150 residues in length. The function of this family is unknown.; PDB: 2IMJ_B.
Probab=97.77 E-value=0.0016 Score=52.94 Aligned_cols=100 Identities=20% Similarity=0.304 Sum_probs=71.8
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCCCEEEEEE
Q 026892 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAVGVTW 164 (231)
Q Consensus 85 ~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~~~Vav~w 164 (231)
...+-|+..=++||.+|++.+.-.|++|.+|.+=. .-+.|+++|.+|+.+-+.. --+.+..- ++.+-.+.+++|++
T Consensus 11 tA~~KVr~AEdaWNsrdP~~ValaYT~Ds~WRNR~--eF~~GR~~I~~FLtrKW~r-E~~YrLiK-ELwaf~~nRIAVRF 86 (143)
T PF07080_consen 11 TAIQKVRAAEDAWNSRDPEKVALAYTPDSVWRNRD--EFLTGREEIVAFLTRKWER-ELDYRLIK-ELWAFTDNRIAVRF 86 (143)
T ss_dssp HHHHHHHHHHHHHTTT-HHHHHTTEEEEEEEEETT--EEE-SHHHHHHHHHHHHHH-SEEEEEEE-EEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhccccCChhHheeccCCCCcccCcc--cccCcHHHHHHHHHHHHHH-hhhhhhHH-hhhhccCCeEEEEE
Confidence 46677888888999999999999999999999653 3578999999999987754 23444433 44432234888876
Q ss_pred EEEE---CCeeEeeeceEEEEEEEeeCCe
Q 026892 165 HLEW---KGKPFPFSKGCSFYKLEVVNGK 190 (231)
Q Consensus 165 ~~~~---~Gk~i~~~rG~~vfr~d~~dGK 190 (231)
..++ .|+-+.- -|-.-++|| ++|+
T Consensus 87 ~YE~~d~~gqW~Rs-yGnEnWeFd-~~Gl 113 (143)
T PF07080_consen 87 AYEWHDDSGQWFRS-YGNENWEFD-EDGL 113 (143)
T ss_dssp EEEEE-TTS-EEEE-EEEEEEEE--TTS-
T ss_pred eEEEEcCCCCEEec-ccccccccC-CCcc
Confidence 6665 4888887 699999998 4895
No 28
>COG4875 Uncharacterized protein conserved in bacteria with a cystatin-like fold [Function unknown]
Probab=97.74 E-value=0.0011 Score=53.43 Aligned_cols=113 Identities=18% Similarity=0.211 Sum_probs=76.9
Q ss_pred CCCcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCC-CcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCCCCEE
Q 026892 82 DDGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFP-RPFLGRKATLDFFKKFSDSISSDLQFVIDDISAEDSSAV 160 (231)
Q Consensus 82 ~~~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~-g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g~~~V 160 (231)
.+.+.+++..+|-+++-.||++.+.+.|+||+|.- |.++ .+...+.++++||..+.. ..|.-.+.-..+--+-+...
T Consensus 35 t~~~vAaLFdrWN~~L~TGdP~kV~anyApDaVLL-PT~Sn~vR~s~~ei~DYF~~FLk-~KPqG~IdsR~i~~gcN~Al 112 (156)
T COG4875 35 TEREVAALFDRWNAALTTGDPNKVAANYAPDAVLL-PTMSNQVRSSRSEILDYFSHFLK-LKPQGYIDSRKITLGCNNAL 112 (156)
T ss_pred cHHHHHHHHHHHHhhhhcCChHHHHhhcCCceEee-cccccccccCHHHHHHHHHHHhc-cCCcceecceeEEecccccc
Confidence 34456777777778888999999999999999985 4444 456789999999998775 34543433332222211111
Q ss_pred EE-EEEEEE-CCeeEeeeceEEEEEEEeeCCeEEEEEEEEe
Q 026892 161 GV-TWHLEW-KGKPFPFSKGCSFYKLEVVNGKRQITYGRDI 199 (231)
Q Consensus 161 av-~w~~~~-~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy 199 (231)
-. .+.+.+ .|..... |..-.|.- .||.|.|+.+.-.
T Consensus 113 D~GtYTF~f~DGs~v~A-RYtftY~w--~~g~WlI~~HHSS 150 (156)
T COG4875 113 DAGTYTFIFTDGSNVQA-RYTFTYSW--IDGTWLIVNHHSS 150 (156)
T ss_pred ccceEEEEEcCCcceeE-EEEEEEEe--cCCeEEEEecccc
Confidence 11 344444 4777777 77888888 7899999987643
No 29
>PF05223 MecA_N: NTF2-like N-terminal transpeptidase domain; InterPro: IPR007887 The multiple antibiotic resistance of methicillin-resistant strains of Staphylococcus aureus (MRSA) has become a major clinical problem worldwide. Methicillin resistance in MRSA strains is due to the acquisition of the mecA gene via horizontal transfer from an unidentified species which encodes penicillin-binding protein 2a (PBP2a). The structure of the N-terminal domain from MecA is known [] Q53707 from SWISSPROT and is found to be similar to that found in NTF2 IPR002075 from INTERPRO. The length of the PBP2A N-terminal domain (which positions the transpeptidase active site more than 100A from the expected C terminus of the transmembrane anchor) suggests a possible structural role and potentially gives the transpeptidase domain substantial reach from the cell membrane. This domain seems unlikely to have an enzymatic function.; GO: 0046677 response to antibiotic; PDB: 1MWS_B 1MWT_B 1MWR_A 1MWU_A 1VQQ_A.
Probab=97.04 E-value=0.0049 Score=48.30 Aligned_cols=111 Identities=13% Similarity=0.284 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcC-CCeEEEEEEEEeCCCCEEEE--
Q 026892 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSIS-SDLQFVIDDISAEDSSAVGV-- 162 (231)
Q Consensus 86 ~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~-~d~~~~i~dvv~~g~~~Vav-- 162 (231)
..+.+++|+++|+++|++++.++++++. ....+++++.+.++..+..+. .++++....+...++....+
T Consensus 3 p~~~~~~f~~aw~~~dy~~m~~~~~~~~--------k~~~s~~~~~~~~~~i~~~l~~~~l~v~~~~~~~~~~~~~~~~~ 74 (118)
T PF05223_consen 3 PEETAEAFLEAWEKGDYAAMYELTSDPS--------KSQYSKEDFVERYQNIYEGLGAENLKVEAEKVKKDEDDTATVPY 74 (118)
T ss_dssp --HHHHHHHHHHHTT-HHHHHHTB-HHH--------HHHHHHHHHHTHHHHHHHHHT--EEEEEEEEEEECCTTEEEEEE
T ss_pred HHHHHHHHHHHHHcCCHHHHHHhhchhh--------hccccHHHHHHHHHHHHhhCCccceEEEeccceecCCCceEEEE
Confidence 5788999999999999999999887654 234577888888887776654 33556444444333334444
Q ss_pred EEEEEEC-CeeEeeeceEEEEEEEeeCCeEEEEEEEEeeCCCCCCC
Q 026892 163 TWHLEWK-GKPFPFSKGCSFYKLEVVNGKRQITYGRDIVEPAFKPG 207 (231)
Q Consensus 163 ~w~~~~~-Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~~~~p~ 207 (231)
++.+... |+.+.+ .+ ..++...+|.|+|.|--...=|-++.|
T Consensus 75 ~~~~~t~~g~~~~~-~~--~~~l~~~~~~W~V~W~ps~I~P~L~~g 117 (118)
T PF05223_consen 75 TVTMDTPAGGIWTY-NY--TLTLVKEDDDWKVDWDPSLIFPGLKDG 117 (118)
T ss_dssp EEEEEETTEEE-EE-EE--EEEEEEETTCEEE---GGGTSTT--TT
T ss_pred EEEEEeCCCCceee-EE--EEEEEecCCcEEEEeCccCCCCCCCCC
Confidence 4444443 444444 23 333332467788887555444444433
No 30
>cd00667 ring_hydroxylating_dioxygenases_beta Ring hydroxylating dioxygenase beta subunit. This subunit has a similar structure to NTF-2, Ketosteroid isomerase and scytalone dehydratase.The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonheme iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centers to a terminal dioxygenase. Aromatic-ring-hydroxylating dioxygenases oxidize aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilize a mononuclear non-heme iron center to catalyze the addition of dioxygen to their respective substrates. The active site of these enzymes however is in the alpha sub-unit. No functional role has been attributed to the beta sub-unit except for a structural role.
Probab=96.79 E-value=0.11 Score=42.22 Aligned_cols=120 Identities=14% Similarity=0.114 Sum_probs=68.6
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCc---------------ccCHHHHHHHHHHhHhhc----C--C
Q 026892 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRP---------------FLGRKATLDFFKKFSDSI----S--S 143 (231)
Q Consensus 85 ~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~---------------~~GrdaI~a~f~~~~~~~----~--~ 143 (231)
...+++-+|-.+++.+|++.+.+||++|+++.-|..+.. ..|++.+.+.+..+.... . +
T Consensus 5 ~I~~ll~~ya~~LD~~~~~~w~~lft~D~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~rv~~l~~~~~~~~~~~~ 84 (160)
T cd00667 5 EVEQFLYREARLLDDRRWDEWLALFAEDCHYWVPARENRERRDEDPGLELSAIYDDDRRMLEDRVVRLRTGRAWSEDPPS 84 (160)
T ss_pred HHHHHHHHHHHHhcccCHHHHHHhhccccEEEcceeechhhhccCCCCCeeEEEeCCHHHHHHHHHHHhcCCccccCCCC
Confidence 356777888889999999999999999999985543221 247888888777655421 1 2
Q ss_pred CeEEEEEEEE--eCCCCEEEEEEEE---EE--CCeeEeee-ceEEEEEEEeeCCeEEEEEEEEeeCCCCCC
Q 026892 144 DLQFVIDDIS--AEDSSAVGVTWHL---EW--KGKPFPFS-KGCSFYKLEVVNGKRQITYGRDIVEPAFKP 206 (231)
Q Consensus 144 d~~~~i~dvv--~~g~~~Vav~w~~---~~--~Gk~i~~~-rG~~vfr~d~~dGK~~Iv~~rdy~d~~~~p 206 (231)
..++.+-.+. ..++..+.++..+ .. .|....+. ..-+-+.. .+|.|+|..-+-..|....|
T Consensus 85 ~~rH~vsn~~i~~~~~d~a~~~s~~~v~~~~~~~~~~~~~g~~~d~~~r--~~~~wri~~R~~~~d~~~~~ 153 (160)
T cd00667 85 RTRHLVSNVRVLEGDGGEIEVRSNFVVVRTRLDGESDVFAGGRYDDLRR--SEDGLRIASRRVVLDNDRIP 153 (160)
T ss_pred cceEEEccEEEEecCCCEEEEEEEEEEEEEcCCCeEEEEEEEEEEEEEE--cCCeEEEEEEEEEEeccccc
Confidence 2334443332 2222355554332 11 12332221 11222333 35678888877666655443
No 31
>PRK10069 3-phenylpropionate dioxygenase subunit beta; Provisional
Probab=96.53 E-value=0.25 Score=41.64 Aligned_cols=120 Identities=11% Similarity=0.071 Sum_probs=67.1
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccC--------------------HHHHHHHHHHhHhh---
Q 026892 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLG--------------------RKATLDFFKKFSDS--- 140 (231)
Q Consensus 84 ~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~G--------------------rdaI~a~f~~~~~~--- 140 (231)
....+++.++-..++.+|++.+.+||+||++|..|..+....| +..+++.+.++...
T Consensus 20 ~eI~~~l~~eA~lLD~~d~~~Wl~lft~D~~Y~~P~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~L~~Rv~rl~~~~~~ 99 (183)
T PRK10069 20 HEISQFLYREARLLDEWRYDDWLALLAEDIHYTMPMRTTVNAQRRDRREGVQTPPTMAWFDDNKDQLERRVARLETGMAW 99 (183)
T ss_pred HHHHHHHHHHHHHhchhhHHHHHHhhccccEEEccccccccccccccccccCCCcccEEEcCCHhHHHHHHHHHhCCCcc
Confidence 3456666677779999999999999999999876543333333 46677777765421
Q ss_pred ---cCCCeEEEEEEEE--e-CCCCEEEEE--EEE-EE-CC--eeEeeeceEEEEEEEeeCCeEEEEEEEEeeCCCCC
Q 026892 141 ---ISSDLQFVIDDIS--A-EDSSAVGVT--WHL-EW-KG--KPFPFSKGCSFYKLEVVNGKRQITYGRDIVEPAFK 205 (231)
Q Consensus 141 ---~~~d~~~~i~dvv--~-~g~~~Vav~--w~~-~~-~G--k~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~~~~ 205 (231)
..+..++.+-.+. . +++..+.++ +.+ .. .+ ..+-..+..+.++. .+|.|+|.+-.-..|....
T Consensus 100 s~~p~~rtrH~vsNv~V~~~~~~d~a~vrS~~~v~~~~~~~~~~~~~G~y~D~l~r--~~~gwrI~~R~v~ld~~~~ 174 (183)
T PRK10069 100 AEEPPSRLRHLITNVRVEETDIPDEFAVRSNFLLYRSRGERDEDFLVGRREDVLRR--EGDGWRLARRRIVLDQAVL 174 (183)
T ss_pred ccCCCCcceEEEeeEEEEecCCCCEEEEEEEEEEEEEcCCCceEEEEEEEEEEEEE--cCCEEEEEEEEEEEccCcc
Confidence 1122233443332 1 222344442 222 11 22 12223234455555 4676788876655555443
No 32
>PF12870 Lumazine_bd: Lumazine-binding domain; InterPro: IPR024267 This entry represents a lumazine-binding domain found in a family of putative lipoproteins from bacteria. Lumazine is a fluorescent accessory protein having 6,7-dimethyl-8-(1'-D-ribityl) lumazine (DMRL) as its authentic chromophore; it modulates the emission of bacterial luciferase to shorter wavelengths with increasing luminous strength.; PDB: 3K7C_C.
Probab=96.48 E-value=0.033 Score=41.52 Aligned_cols=100 Identities=18% Similarity=0.217 Sum_probs=51.5
Q ss_pred CCcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCC-Cccc-CHHHHHHHHHHhHhhcCCCeEEEEEEEEeC--CCC
Q 026892 83 DGGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFP-RPFL-GRKATLDFFKKFSDSISSDLQFVIDDISAE--DSS 158 (231)
Q Consensus 83 ~~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~-g~~~-GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~--g~~ 158 (231)
..++.++++.||++++.||++.+.+++.++..- +... ..+. -...+...+...... .. .+.+.++... + .
T Consensus 6 ~~~P~~~v~~f~~al~~gd~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~~v~~~~~g-~ 79 (111)
T PF12870_consen 6 SSTPEEVVKNFFDALKNGDYEKAYAYLSPESRE--PEKAKEDFEQFEKQFASEMKKKYKK-IG--SIKIVEVEENTIG-D 79 (111)
T ss_dssp ---HHHHHHHHHHHHCTT-HHHHHHTB--TT----SHHHHHHHHHHHHHHHHHHHHHHHH-TT--SEEEEEEEEEEES-S
T ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHhhCccccc--hhHHHHHHHHHHHHHHHHHHHhhhc-cC--ceEEEEEEEeccC-C
Confidence 346889999999999999999999999988653 1000 0111 111222333322221 12 2333333322 3 3
Q ss_pred EEEEEEEEEEC-CeeEeeeceEEEEEEEeeCCeEEE
Q 026892 159 AVGVTWHLEWK-GKPFPFSKGCSFYKLEVVNGKRQI 193 (231)
Q Consensus 159 ~Vav~w~~~~~-Gk~i~~~rG~~vfr~d~~dGK~~I 193 (231)
.+.|.+..++. |..... -+.+.+. ||+|.|
T Consensus 80 ~A~V~v~~~~~~g~~~~~--~~~lvk~---dg~Wkv 110 (111)
T PF12870_consen 80 TATVTVKITYKDGKEKTF--TVPLVKE---DGKWKV 110 (111)
T ss_dssp EEEEEEEEEETTS-EEEE--EEEEEEE---TTEEEE
T ss_pred EEEEEEEEEECCCCeeEE--EEEEEEE---CCEEEe
Confidence 66677776654 555544 3455554 899887
No 33
>cd00780 NTF2 Nuclear transport factor 2 (NTF2) domain plays an important role in the trafficking of macromolecules, ions and small molecules between the cytoplasm and nucleus. This bi-directional transport of macromolecules across the nuclear envelope requires many soluble factors that includes GDP-binding protein Ran (RanGDP). RanGDP is required for both import and export of proteins and poly(A) RNA. RanGDP also has been implicated in cell cycle control, specifically in mitotic spindle assembly. In interphase cells, RanGDP is predominately nuclear and thought to be GTP bound, but it is also present in the cytoplasm, probably in the GDP-bound state. NTF2 mediates the nuclear import of RanGDP. NTF2 binds to both RanGDP and FxFG repeat-containing nucleoporins.
Probab=96.31 E-value=0.28 Score=38.04 Aligned_cols=102 Identities=17% Similarity=0.231 Sum_probs=63.0
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEE----eCCCCEEE
Q 026892 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS----AEDSSAVG 161 (231)
Q Consensus 86 ~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv----~~g~~~Va 161 (231)
..+.|++||..++ .|.+.+..+|+++....-.+ .....|+++|.+++..+- ....++.+..+- .++...+.
T Consensus 6 ~~~Fv~~YY~~l~-~~~~~L~~fY~~~s~~~~~~-~~~~~g~~~I~~~l~~lp---~~~~~~~i~~~d~q~~~~~~ili~ 80 (119)
T cd00780 6 AKAFVQQYYSIFD-NNREGLHRLYGDTSMLSREG-MKQVTGRDAIVEKLSSLP---FQKTKHKITTVDSQPTPSGGVIVM 80 (119)
T ss_pred HHHHHHHHHHHHh-cCHHHHHhhcCCCcEEEECC-ceEecCHHHHHHHHHhCC---CcceEEEEEEEeeeEcCCCCEEEE
Confidence 4578999999999 88999999999999886444 246789999999888532 124555554442 22322233
Q ss_pred EEEEEEEC-CeeEeeeceEEEEEEEeeCCeEEEEE
Q 026892 162 VTWHLEWK-GKPFPFSKGCSFYKLEVVNGKRQITY 195 (231)
Q Consensus 162 v~w~~~~~-Gk~i~~~rG~~vfr~d~~dGK~~Iv~ 195 (231)
|.-.+..+ +....| ...|-+.+.++++-|..
T Consensus 81 V~G~~~~~~~~~~~F---~q~F~L~~~~~~~~I~n 112 (119)
T cd00780 81 VTGSLKLDEQPPRKF---SQTFVLAPQNGGYFVLN 112 (119)
T ss_pred EEEEEEECCCCceeE---eEEEEEEecCCeEEEEe
Confidence 33333333 344555 34445543345544443
No 34
>PF11533 DUF3225: Protein of unknown function (DUF3225); InterPro: IPR024507 This family of proteins has no known function.; PDB: 2OWP_A 2RCD_B.
Probab=95.75 E-value=0.36 Score=38.87 Aligned_cols=52 Identities=15% Similarity=0.124 Sum_probs=36.7
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHh
Q 026892 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKF 137 (231)
Q Consensus 86 ~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~ 137 (231)
..+...+|.+|+...|++.+.+||.++-.--..+.++.+.|.++|++|=...
T Consensus 12 v~aaf~~YE~AL~~nDv~~Ld~lFw~~p~TvRyg~~E~LyG~~aI~aFR~~R 63 (125)
T PF11533_consen 12 VTAAFDRYERALMANDVDALDALFWDDPRTVRYGAGENLYGHDAIRAFRAAR 63 (125)
T ss_dssp HHHHHHHHHHHHHCT-HHHHHHCB--STT-EEEETTEEEESHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhCCHHHHHHHhccCCceEEECCCccccCHHHHHHHHhcC
Confidence 4567788888999999999999996664322223345789999999977743
No 35
>KOG4457 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.06 E-value=2.4 Score=36.05 Aligned_cols=87 Identities=17% Similarity=0.340 Sum_probs=59.3
Q ss_pred hhhcCCeEEEcCCCCCcccCHHHHHHHHHHh---HhhcCCCeEEEEEEEE-eCCCCEEEEEEEEEE--------C-----
Q 026892 107 ELIADDCVYEDLIFPRPFLGRKATLDFFKKF---SDSISSDLQFVIDDIS-AEDSSAVGVTWHLEW--------K----- 169 (231)
Q Consensus 107 ~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~---~~~~~~d~~~~i~dvv-~~g~~~Vav~w~~~~--------~----- 169 (231)
.+|++|+++++-.++-..+|++.+...|.-. -...++-+++++..+. ..|+-.|-++|++.. +
T Consensus 57 S~Ys~dvvf~n~I~~v~t~G~~~y~~~~~~~rtlg~~~~ahv~~EvL~vt~h~d~~Tvr~RWRv~gvsv~~~f~~~~l~~ 136 (202)
T KOG4457|consen 57 SFYSKDVVFDNQIFSVETRGIEQYMSHFGMIRTLGQVFLAHVEMEVLSVTPHIDEGTVRCRWRVKGVSVTRIFMNPRLLR 136 (202)
T ss_pred eeecCCeEEeecccceeehhHHHHHHHHHHHHHHHHHhhhheeeEeEeecccCCCceEEEEEEEecceEeeeeechHHhh
Confidence 5789999999988887789999988766521 1223566778877665 223347888998721 1
Q ss_pred -C---eeEe-eeceEEEEEEEeeCCeEEEEEEE
Q 026892 170 -G---KPFP-FSKGCSFYKLEVVNGKRQITYGR 197 (231)
Q Consensus 170 -G---k~i~-~~rG~~vfr~d~~dGK~~Iv~~r 197 (231)
. +... + .|-+++.++ .+|. |..++
T Consensus 137 ~de~~~~~swy-DgYSv~yl~-~~Gl--I~kh~ 165 (202)
T KOG4457|consen 137 FDERMQNLSWY-DGYSVLYLD-GNGL--IYKHT 165 (202)
T ss_pred HHHHhcccccc-cceeEEEEC-CCce--EEeee
Confidence 1 1112 3 688999997 4898 77776
No 36
>COG3558 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=88.22 E-value=0.031 Score=44.94 Aligned_cols=98 Identities=20% Similarity=0.330 Sum_probs=65.2
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEE-eCCCCEEEEEE
Q 026892 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS-AEDSSAVGVTW 164 (231)
Q Consensus 86 ~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv-~~g~~~Vav~w 164 (231)
..+.|+-.=++||.+|.+.+.-.|++|-+|.+-. .-+.|++.|++|+.+-+..- -+.+.. .++. -.| .+++|++
T Consensus 14 a~~kvr~aed~wnsrdp~kv~layt~ds~wrnra--ef~~gre~i~~fl~rkw~re-~~yrli-kelwaf~g-nriavrf 88 (154)
T COG3558 14 AIQKVRMAEDAWNSRDPAKVALAYTEDSFWRNRA--EFFQGREKIQEFLTRKWDRE-LEYRLI-KELWAFTG-NRIAVRF 88 (154)
T ss_pred HHHHHHHhHhccccCChhheeeeeccchhhhhHH--HHHccHHHHHHHHHhhhhHH-HHHHHH-HHHHhhcC-CeEEEEE
Confidence 4566777778999999999999999999998543 24689999999999765431 222221 1222 233 3777766
Q ss_pred EEEE---CCeeEeeeceEEEEEEEeeCCe
Q 026892 165 HLEW---KGKPFPFSKGCSFYKLEVVNGK 190 (231)
Q Consensus 165 ~~~~---~Gk~i~~~rG~~vfr~d~~dGK 190 (231)
..+| .|+-+.. -|-.-++|| ++|.
T Consensus 89 ayew~dd~g~wfra-ygnenwefd-e~gl 115 (154)
T COG3558 89 AYEWHDDSGQWFRA-YGNENWEFD-EAGL 115 (154)
T ss_pred eEeeecccchHHHH-hCCcccccc-hhhH
Confidence 6655 3655554 356667776 3663
No 37
>TIGR03231 anthran_1_2_B anthranilate 1,2-dioxygenase, small subunit. Anthranilate (2-aminobenzoate) is an intermediate of tryptophan (Trp) biosynthesis and degradation. Members of this family are the small subunit of anthranilate 1,2-dioxygenase, which acts in Trp degradation by converting anthranilate to catechol. Closely related paralogs typically are the benzoate 1,2-dioxygenase small subunit, among the larger set of ring-hydroxylating dioxygenases.
Probab=81.05 E-value=29 Score=28.48 Aligned_cols=32 Identities=13% Similarity=0.083 Sum_probs=27.1
Q ss_pred HHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCC
Q 026892 88 VVVRRFYAGINGRDLASVEELIADDCVYEDLI 119 (231)
Q Consensus 88 ~lVr~fydAfN~gDleal~~L~A~DvV~~dp~ 119 (231)
+++-++-..++.++++.+.++|++|+.|.-|.
T Consensus 3 ~~l~~ea~llD~~~~~~W~~lf~~d~~Y~vP~ 34 (155)
T TIGR03231 3 QFLYRKAELCDAQDWDAYLDLFDEDSEFHLPQ 34 (155)
T ss_pred hHHHHHHHHhcccCHHHHHHHhCcCceEEeec
Confidence 45566667999999999999999999988654
No 38
>PLN02382 probable sucrose-phosphatase
Probab=80.58 E-value=54 Score=31.21 Aligned_cols=95 Identities=11% Similarity=0.095 Sum_probs=63.5
Q ss_pred HHHHHH--HHHHHHhCCC-------HHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCC--eEEEEEEEE-
Q 026892 86 GAVVVR--RFYAGINGRD-------LASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSD--LQFVIDDIS- 153 (231)
Q Consensus 86 ~~~lVr--~fydAfN~gD-------leal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d--~~~~i~dvv- 153 (231)
..++|+ .+|+.|-+|+ ++.+.+.++|+++.-.|. |.....++..+.|+.+.. ..++ +++.++++.
T Consensus 284 ~~evv~~~~~~e~W~~~~~~~~~~~~~~l~~~~~p~~~~v~p~--G~~~~~~~~~~~~~~~~G-~~~g~~~~i~vd~~~~ 360 (413)
T PLN02382 284 AHEVVKFYLFYEKWRRGEVENSDEVFQRLKSSCAPNGVFVHPS--GVEKSLHDSIDELRSCYG-DKKGKKFRVWVDRVLS 360 (413)
T ss_pred HHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHhcCCCeeEECCC--cccCCHHHHHHHHHHhhC-CCCCCEEEEEEeeEEE
Confidence 445554 4557787776 788999999999997664 567899999999998754 5688 887777665
Q ss_pred -eCCCCEEEE---EEEEEECCeeEeeeceEEEEEEE
Q 026892 154 -AEDSSAVGV---TWHLEWKGKPFPFSKGCSFYKLE 185 (231)
Q Consensus 154 -~~g~~~Vav---~w~~~~~Gk~i~~~rG~~vfr~d 185 (231)
..++..+.| +|+.. +|+.-.- +-..+|+.+
T Consensus 361 ~~~~~~~~~v~~~e~q~~-~~~~~~~-~ttavl~~~ 394 (413)
T PLN02382 361 TQLGPDTWLVKFDKWEQS-GDERKCC-LTTALLTSK 394 (413)
T ss_pred EEEcCCeEEEEEeeeeec-CCcceeE-EEEEEEeeC
Confidence 222234444 56654 3433222 346677774
No 39
>PF07107 WI12: Wound-induced protein WI12; InterPro: IPR009798 This entry consists of several plant wound-induced protein sequences related to WI12 from Mesembryanthemum crystallinum (Common ice plant) (Q9XES3 from SWISSPROT). Wounding, methyl jasmonate, and pathogen infection is known to induce local WI12 expression. WI12 expression is also thought to be developmentally controlled in the placenta and developing seeds. WI12 preferentially accumulates in the cell wall and it has been suggested that it plays a role in the reinforcement of cell wall composition after wounding and during plant development [].
Probab=80.21 E-value=6.8 Score=30.89 Aligned_cols=51 Identities=18% Similarity=0.137 Sum_probs=33.3
Q ss_pred CeEEEEEEEEeCCCCEEEEEEEEEECCeeEeeeceEEEEEEEeeCCeEEEEEEEEeeCCCC
Q 026892 144 DLQFVIDDISAEDSSAVGVTWHLEWKGKPFPFSKGCSFYKLEVVNGKRQITYGRDIVEPAF 204 (231)
Q Consensus 144 d~~~~i~dvv~~g~~~Vav~w~~~~~Gk~i~~~rG~~vfr~d~~dGK~~Iv~~rdy~d~~~ 204 (231)
.++|....+..=|+ .|.++- .+.+... -.++.|++ +||+ |+..|+|++..+
T Consensus 13 sF~F~P~sV~afG~-~ViaEG--~~~~~~~---yWVHaWTV--~dGi--ITqlREYFNT~l 63 (109)
T PF07107_consen 13 SFRFVPRSVDAFGS-TVIAEG--CDETRSV---YWVHAWTV--KDGI--ITQLREYFNTSL 63 (109)
T ss_pred cEEEeccEEEEECC-EEEEec--ccCcCcE---EEEEEEEe--cCCE--EEeeeeeeeeEE
Confidence 46777766654342 444332 2222232 26899999 8998 999999998764
No 40
>PRK01617 hypothetical protein; Provisional
Probab=77.70 E-value=30 Score=28.68 Aligned_cols=31 Identities=16% Similarity=0.191 Sum_probs=27.9
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeE
Q 026892 84 GGGAVVVRRFYAGINGRDLASVEELIADDCV 114 (231)
Q Consensus 84 ~~~~~lVr~fydAfN~gDleal~~L~A~DvV 114 (231)
++.++|+|.=|.||..+|++-|.+-.|||..
T Consensus 28 ~taE~LMRSRYsAy~~~~~dYl~~T~hP~~r 58 (154)
T PRK01617 28 PDPEHLMRSRYCAFVMKDADYLIKTWHPDCH 58 (154)
T ss_pred CCHHHHHHHHHHHHHhcccchhhhcCCCccC
Confidence 4589999999999999999999999988863
No 41
>COG4460 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=77.55 E-value=13 Score=29.67 Aligned_cols=61 Identities=20% Similarity=0.260 Sum_probs=47.7
Q ss_pred HHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEE
Q 026892 90 VRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS 153 (231)
Q Consensus 90 Vr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv 153 (231)
+..|+.+-.++-+|++..=|++|+..-.|. |..-.++++.++|+.- ..+.|++.++|+++-
T Consensus 16 i~dWl~~~~adtldal~arfaedftMitP~--GviLD~~Alg~~frs~-racrpGl~I~ie~i~ 76 (130)
T COG4460 16 IVDWLVAARADTLDALRARFAEDFTMITPS--GVILDRDALGDHFRSS-RACRPGLAISIEDIR 76 (130)
T ss_pred HHHHHHhcccccHHHHHHHHhcCceEecCC--ceEeccHHHHHHHHhc-cCCCCCeEEEEeccc
Confidence 445555545667888888899999987664 5788999999999964 458899999998775
No 42
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=71.86 E-value=75 Score=30.67 Aligned_cols=96 Identities=19% Similarity=0.150 Sum_probs=63.6
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCC---cccCHHHHHHHHHHhHhhcCCCeEEEEEEEEe----CCC
Q 026892 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPR---PFLGRKATLDFFKKFSDSISSDLQFVIDDISA----EDS 157 (231)
Q Consensus 85 ~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g---~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~----~g~ 157 (231)
-..+.|++||..++ ...+.+..+|.++-++..|...+ ...|.++|.+.+-.+ .+.+.+++|..+.. +++
T Consensus 16 vg~~Fv~qYY~~L~-~~P~~lhrfY~~~S~ltr~~~dg~m~s~t~~~~I~~~i~sl---d~~~~s~eI~tvdsQ~S~~~G 91 (419)
T KOG0116|consen 16 VGNEFVRQYYNVLQ-NSPSKLHRFYMDDSVLTRPGLDGKMVSVTGLEAIHEKIMSL---DYEVCSVEISTVDSQASLEKG 91 (419)
T ss_pred HHHHHHHHHHHHHh-hChHHHHHHhhccceeeccCCCCceEEEecHHHhhhheeec---CCCceeEEEEEEehhhhccCC
Confidence 35678999999885 56888999999999998776554 468999998766543 46778888876652 222
Q ss_pred CEEEEEEEEEECCeeEeeeceEEEEEEEe
Q 026892 158 SAVGVTWHLEWKGKPFPFSKGCSFYKLEV 186 (231)
Q Consensus 158 ~~Vav~w~~~~~Gk~i~~~rG~~vfr~d~ 186 (231)
..|.|.-.++++++.. - +.+..|-|.+
T Consensus 92 vvI~VtG~lt~~~~~r-R-kF~QtFfLap 118 (419)
T KOG0116|consen 92 VVIMVTGYLTNKDGPR-R-KFSQTFFLAP 118 (419)
T ss_pred eEEEEEEEEEeCCCcc-e-EEEEEEEEee
Confidence 3344444455665541 1 3445454543
No 43
>PRK00183 hypothetical protein; Provisional
Probab=59.08 E-value=1.1e+02 Score=25.62 Aligned_cols=89 Identities=10% Similarity=0.068 Sum_probs=55.4
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEE---e-CC-CCE
Q 026892 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS---A-ED-SSA 159 (231)
Q Consensus 85 ~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv---~-~g-~~~ 159 (231)
.+++++|.=|.||..+|++-|.+-.+|+.. +.. -.++|.++. .+.+|.-.+|+ . ++ +..
T Consensus 29 TaE~LMRSRYsAf~~~~~dYL~~T~hP~~r---~~~-----~~~~i~~~~--------~~~~Wl~LeI~~~~~~~~~~~~ 92 (157)
T PRK00183 29 CAEALMRSRYSAYVLGLVDYLVATTLPAQQ---AGL-----DRAAIAAWS--------AQSTWLGLEVESSEVLGGQPEH 92 (157)
T ss_pred CHHHHHHHHHHHHHhcccchhhhccCcccc---ccc-----chHHHhhcc--------cCCEEeceEEEEcccCCCCCce
Confidence 488999999999999999999998888864 111 223333322 23455444444 2 21 233
Q ss_pred EEEEEEEEE--CCeeEeeeceEEEEEEEeeCCeEE
Q 026892 160 VGVTWHLEW--KGKPFPFSKGCSFYKLEVVNGKRQ 192 (231)
Q Consensus 160 Vav~w~~~~--~Gk~i~~~rG~~vfr~d~~dGK~~ 192 (231)
..|++...+ +|+...+ .=.+.|+- +||+|.
T Consensus 93 g~VeF~A~y~~~g~~~~l-hE~S~F~r--~~g~W~ 124 (157)
T PRK00183 93 AFVTFTARWHDADGEHSH-RERSAFVQ--HQGRWY 124 (157)
T ss_pred EEEEEEEEEecCCCccce-eeeeeeeE--eCCEEE
Confidence 345555544 4666666 56777877 689754
No 44
>PRK01752 hypothetical protein; Provisional
Probab=56.00 E-value=57 Score=27.16 Aligned_cols=92 Identities=11% Similarity=0.077 Sum_probs=56.6
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEe---CCCCEE
Q 026892 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISA---EDSSAV 160 (231)
Q Consensus 84 ~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~---~g~~~V 160 (231)
.+.++|+|.=|.||..+|++-|.+-.||+-.-. .-++++.++. .+.+|.-.+|+. +++...
T Consensus 31 ~taE~LMRSRYSAy~~~~~dYL~~T~hp~~r~~--------~~~~~~~~~~--------~~~~W~~LeI~~~~~~~~~~g 94 (156)
T PRK01752 31 ETAEQLMRSRYAAYVLKNIDYIVETTVPSQQTL--------LDPAALQTWA--------ENTTWLGLEILAHESLTKIHS 94 (156)
T ss_pred CCHHHHHHHHHHHHHhcccchhhhcCCcccccC--------cCHHHHhccc--------cCCeEeeeEEEeccCCCCceE
Confidence 347899999999999999999999888875431 1233333211 234555444442 222334
Q ss_pred EEEEEEEE--CCeeEeeeceEEEEEEEeeCCeEEEE
Q 026892 161 GVTWHLEW--KGKPFPFSKGCSFYKLEVVNGKRQIT 194 (231)
Q Consensus 161 av~w~~~~--~Gk~i~~~rG~~vfr~d~~dGK~~Iv 194 (231)
.|++...+ +|+...+ .=.+-|+- +||+|.-+
T Consensus 95 ~VeF~A~y~~~g~~~~~-hE~S~F~r--~~g~W~Yv 127 (156)
T PRK01752 95 AVEFKAIFQGEEGEQAH-HERSLFVK--IDNRWYFV 127 (156)
T ss_pred EEEEEEEEecCCCcccc-chhhhhee--ccCCEEEe
Confidence 45666544 4666666 56677777 68875433
No 45
>PF11453 DUF2950: Protein of unknown function (DUF2950); InterPro: IPR021556 This is a bacterial family of uncharacterised proteins.
Probab=37.19 E-value=76 Score=28.89 Aligned_cols=50 Identities=8% Similarity=0.076 Sum_probs=40.4
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHh
Q 026892 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKF 137 (231)
Q Consensus 85 ~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~ 137 (231)
+..+-+..|-+|+..+|.++|.++|-+|..-.-|+. . .+++.+..|++..
T Consensus 6 tPe~Aa~Al~~Av~~~d~~aL~~vLG~~~~~~vp~~--~-~d~~~~~~Fl~~w 55 (271)
T PF11453_consen 6 TPEAAADALVDAVATNDEDALAKVLGPDWRDLVPSG--G-ADREDRYRFLRAW 55 (271)
T ss_pred CHHHHHHHHHHHHhcCCHHHHHHHhCccHHhccCCC--C-ccHHHHHHHHHHH
Confidence 357788899999999999999999999976554443 2 6799988888854
No 46
>COG5517 Small subunit of phenylpropionate dioxygenase [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=34.85 E-value=42 Score=28.24 Aligned_cols=25 Identities=12% Similarity=0.025 Sum_probs=23.0
Q ss_pred HHHhCCCHHHHHhhhcCCeEEEcCC
Q 026892 95 AGINGRDLASVEELIADDCVYEDLI 119 (231)
Q Consensus 95 dAfN~gDleal~~L~A~DvV~~dp~ 119 (231)
+.++.+|++++.++|.++|.|+.|+
T Consensus 19 ~llDd~dwd~Wla~f~e~~~y~m~~ 43 (164)
T COG5517 19 ELLDDRDWDAWLAQFDEQAEYWMPP 43 (164)
T ss_pred HHhccccHHHHHHHHHhhheEeCCc
Confidence 4799999999999999999999766
No 47
>PRK04233 hypothetical protein; Provisional
Probab=34.69 E-value=2.4e+02 Score=22.66 Aligned_cols=85 Identities=9% Similarity=0.059 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEE---eCCCCEEEE
Q 026892 86 GAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDIS---AEDSSAVGV 162 (231)
Q Consensus 86 ~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv---~~g~~~Vav 162 (231)
.++++|.=|.||..+|++-|.+-.+||..-. ++.. ....+.+|.-.+|+ .++++.-.|
T Consensus 34 aE~LMRSRYsAfv~~~~dYL~~T~hp~~r~~------------~~~~-------~~~~~~~Wl~LeI~~~~~~~~~~g~V 94 (129)
T PRK04233 34 AETLMRARYSAYVRRDADYLLASWHPSTRPA------------ELSL-------DEGGRTTWLGLTVQRTLETGADTAEV 94 (129)
T ss_pred HHHHHHHHHHHHHhCccchhhhccCcccCch------------hhhc-------CcccCCEEeeeEEEEccCCCCceEEE
Confidence 7899999999999999999998888876311 1110 01124455544444 222234445
Q ss_pred EEEEEE--CCe-eEeeeceEEEEEEEeeCCeEE
Q 026892 163 TWHLEW--KGK-PFPFSKGCSFYKLEVVNGKRQ 192 (231)
Q Consensus 163 ~w~~~~--~Gk-~i~~~rG~~vfr~d~~dGK~~ 192 (231)
++...+ +|+ ...+ .=.+.|+- +||+|.
T Consensus 95 eF~A~y~~~~~~~~~~-hE~S~F~r--~~g~W~ 124 (129)
T PRK04233 95 VFLARYRIGGGSAVRM-TEHSRFVR--EDGRWY 124 (129)
T ss_pred EEEEEEEcCCCceeEE-EEeeeEEE--ECCEEE
Confidence 666654 333 5555 56677777 689754
No 48
>PF15063 TC1: Thyroid cancer protein 1
Probab=30.68 E-value=27 Score=25.84 Aligned_cols=17 Identities=47% Similarity=0.548 Sum_probs=14.3
Q ss_pred ccccccCCccccCCCCC
Q 026892 3 MTSSISSSSLRTSPSSL 19 (231)
Q Consensus 3 ~~~~~~~~~~~~~~~~~ 19 (231)
|++.++|.|+|.+||..
T Consensus 1 ~~~~~~~~S~~v~Ps~~ 17 (79)
T PF15063_consen 1 MSSYATSASVRVSPSVH 17 (79)
T ss_pred CCCccCCcceeccCCCC
Confidence 78889999999988754
No 49
>PRK02250 hypothetical protein; Provisional
Probab=29.97 E-value=3.3e+02 Score=22.73 Aligned_cols=92 Identities=16% Similarity=0.074 Sum_probs=50.9
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEEEEEEeCC-CCEEEE
Q 026892 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVIDDISAED-SSAVGV 162 (231)
Q Consensus 84 ~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i~dvv~~g-~~~Vav 162 (231)
....++.+.-|.|+.-+|++-+.+-.+|+..- ..-.+.+.+... ... ..++|.+...+. +....|
T Consensus 27 ~TpE~LMRSRYsAyv~g~~~Yl~~T~hP~~r~--------~~~~e~i~~~~~----~~w--~~LeI~~~~~g~~~~~g~V 92 (166)
T PRK02250 27 QTPEQLMRSRYSAHVLGLVDYVVETYHPSCNA--------EEQREGIAESIH----SDW--LKLEVIKTEAGSTPNEGFV 92 (166)
T ss_pred CChhhcchhHhHHHHhcccceeecccCcccCC--------hhhHHHHhhhhh----cee--eccEEEEecCCCCCceEEE
Confidence 34678999999999999988777666666431 112223322221 111 233444333322 233345
Q ss_pred EEEEEE--CCeeEeeeceEEEEEEEeeCCeEE
Q 026892 163 TWHLEW--KGKPFPFSKGCSFYKLEVVNGKRQ 192 (231)
Q Consensus 163 ~w~~~~--~Gk~i~~~rG~~vfr~d~~dGK~~ 192 (231)
++...+ +|+...+ .=.+.|+- +||+|.
T Consensus 93 eF~A~y~~~g~~~~~-~E~S~F~r--~~g~W~ 121 (166)
T PRK02250 93 EFKAYFDEEGKRYCL-EERSRFLK--ENGLWY 121 (166)
T ss_pred EEEEEEecCCCEEEE-EEEEEEEe--eCCEEE
Confidence 555544 5776666 56677766 578743
No 50
>PF13590 DUF4136: Domain of unknown function (DUF4136)
Probab=29.11 E-value=1.8e+02 Score=22.61 Aligned_cols=18 Identities=33% Similarity=0.396 Sum_probs=16.8
Q ss_pred HHHHHHHHHHHHHhhccc
Q 026892 209 TALAAIGAVTWLLQQFPQ 226 (231)
Q Consensus 209 ~~l~~~~~v~~~~~~~p~ 226 (231)
....+-+.|..+|+.||.
T Consensus 133 ~~~~i~~~V~~i~~~fP~ 150 (151)
T PF13590_consen 133 REEAIPKAVNKIFEQFPP 150 (151)
T ss_pred HHHHHHHHHHHHHHhCCC
Confidence 888999999999999995
No 51
>KOG4353 consensus RNA export factor NXT1 [RNA processing and modification]
Probab=28.95 E-value=1.4e+02 Score=24.45 Aligned_cols=50 Identities=18% Similarity=0.341 Sum_probs=37.0
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHh
Q 026892 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKF 137 (231)
Q Consensus 85 ~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~ 137 (231)
..++.++.||+.++++ -.++..||-+++..-- .+.+..|.|.+-+||+.+
T Consensus 15 ~A~eFv~~YY~smD~r-R~~i~rlY~~~atlvW--NGn~v~g~esls~ff~~L 64 (139)
T KOG4353|consen 15 AAEEFVNVYYSSMDKR-RRGIGRLYLDNATLVW--NGNPVSGTESLSEFFNML 64 (139)
T ss_pred HHHHHHHHHHHHHHHH-HHHhHHHhhccceEEE--cCCcchhHHHHHHHHHhC
Confidence 3577899999988654 4688999988774321 245788999999988843
No 52
>PF00866 Ring_hydroxyl_B: Ring hydroxylating beta subunit; InterPro: IPR000391 The degradation of aromatic compounds by aerobic bacteria frequently begins with the dihydroxylation of the substrate by nonhaem iron-containing dioxygenases. These enzymes consist of two or three soluble proteins that interact to form an electron-transport chain that transfers electrons from reduced nucleotides (NADH) via flavin and [2Fe-2S] redox centres to a terminal dioxygenase []. Aromatic-ring-hydroxylating dioxygenases oxidise aromatic hydrocarbons and related compounds to cis-arene diols. These enzymes utilise a mononuclear non-haem iron centre to catalyse the addition of dioxygen to their respective substrates. Naphthalene 1,2-dioxygenase (NDO) from Pseudomonas sp. NCIB9816-4 has a domain structure and iron coordination of the Rieske domain is very similar to that of the cytochrome bc1 domain. The active-site iron centre of one of the alpha subunits is directly connected by hydrogen bonds through a single amino acid, Asp205, to the Rieske [2Fe-2S] centre in a neighbouring alpha subunit. This may be the main route for electron transfer [].; GO: 0003824 catalytic activity, 0006725 cellular aromatic compound metabolic process, 0055114 oxidation-reduction process; PDB: 1ULJ_B 1ULI_D 1WQL_B 2GBX_D 2GBW_B 2XSH_D 2XR8_X 2XRX_V 2YFL_B 2YFJ_J ....
Probab=27.73 E-value=3.2e+02 Score=21.83 Aligned_cols=106 Identities=13% Similarity=0.177 Sum_probs=56.7
Q ss_pred HHhCCCHHHHHhhhcCCeEEEcCCCCC-------c--------ccCHHHHHHHHHHhHhh----cCCC--eEEEEEE--E
Q 026892 96 GINGRDLASVEELIADDCVYEDLIFPR-------P--------FLGRKATLDFFKKFSDS----ISSD--LQFVIDD--I 152 (231)
Q Consensus 96 AfN~gDleal~~L~A~DvV~~dp~~~g-------~--------~~GrdaI~a~f~~~~~~----~~~d--~~~~i~d--v 152 (231)
.++.++++.+.+||++||.|.-|.... + ..++..++.-..++... ..|. ....+-. +
T Consensus 5 lLD~~~~~eWl~l~~~D~~Y~vp~~~~~~~~~~~~~~~~~~~~~d~~~~L~~RV~rl~~~~~~se~P~srtrh~vsnv~v 84 (145)
T PF00866_consen 5 LLDERRYDEWLALFTEDCHYWVPARENRDRRDRDPGSEEMLIFDDDRGMLEDRVERLRTGRAWSEDPPSRTRHFVSNVRV 84 (145)
T ss_dssp HHHTT-HHHHHHTEEEEEEEEEEEBGGC-TTGGGGSBTSEEEEEESHHHHHHHHHHHHSTTHGGGSS--EEEEEEEEEEE
T ss_pred HhhhhHHHHHHHHhccCeEEEEEeccCccccccCCCCceEEEEeCCHhHHHHHHHHHhcCCccccCCCceeEEEEcCEEE
Confidence 688999999999999999998443211 0 25777777766655422 1122 2222322 2
Q ss_pred EeC-CCCEEEE--EEEEE--ECC-eeEee-eceEEEEEEEeeCCeEEEEEEEEeeCCC
Q 026892 153 SAE-DSSAVGV--TWHLE--WKG-KPFPF-SKGCSFYKLEVVNGKRQITYGRDIVEPA 203 (231)
Q Consensus 153 v~~-g~~~Vav--~w~~~--~~G-k~i~~-~rG~~vfr~d~~dGK~~Iv~~rdy~d~~ 203 (231)
.+. ++..+.+ .+.+. ..+ ....+ ++..+.++. .+|.++|..=+-..|..
T Consensus 85 ~~~~~~~~~~v~s~f~v~r~r~~~~~~~~~G~~~d~lr~--~~~~~ki~~R~v~Ld~~ 140 (145)
T PF00866_consen 85 EETEDGGEIEVRSNFLVYRSRLDGDQDLFAGRREDVLRR--TDGGLKIARRRVVLDNS 140 (145)
T ss_dssp EEESSTTEEEEEEEEEEEEEETTTEEEEEEEEEEEEEEE--ESSSEEEEEEEEEES-S
T ss_pred EEecCCCEEEEEEEEEEEEEcCCCcEEEEEEEEEEEEEE--eCCEEEEEEEEEEEecc
Confidence 232 3345555 33331 123 44333 234556666 56667788766555544
No 53
>KOG2104 consensus Nuclear transport factor 2 [Intracellular trafficking, secretion, and vesicular transport]
Probab=27.48 E-value=3.3e+02 Score=21.94 Aligned_cols=59 Identities=15% Similarity=0.231 Sum_probs=41.7
Q ss_pred cHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHhHhhcCCCeEEEE
Q 026892 85 GGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKFSDSISSDLQFVI 149 (231)
Q Consensus 85 ~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~~~~~~~d~~~~i 149 (231)
-.++.++.||.-|+ .|-..+.++|-+.--..- .+..+.|+++|.+-+..+ .|..++..|
T Consensus 9 v~~~FvqhYY~~FD-~dR~ql~~lY~~~S~LTf--EGqq~qG~~~IveKl~sL---pFqkiqh~I 67 (126)
T KOG2104|consen 9 VAKAFVQHYYSLFD-NDRSQLGALYIDTSMLTF--EGQQIQGKDAIVEKLTSL---PFQKIQHSI 67 (126)
T ss_pred HHHHHHHHHHHHhc-CchhHhhhhhcccceeeE--cchhhcchHHHHHHHhcC---Chhhhhcee
Confidence 35678999999998 667779999988743332 234789999998877753 344555554
No 54
>PF04280 Tim44: Tim44-like domain; InterPro: IPR007379 Tim44 is an essential component of the machinery that mediates the translocation of nuclear-encoded proteins across the mitochondrial inner membrane []. Tim44 is thought to bind phospholipids of the mitochondrial inner membrane both by electrostatic interactions and by penetrating the polar head group region [].; GO: 0015450 P-P-bond-hydrolysis-driven protein transmembrane transporter activity, 0006886 intracellular protein transport, 0005744 mitochondrial inner membrane presequence translocase complex; PDB: 2CW9_A 2FXT_A 3QK9_A.
Probab=26.53 E-value=33 Score=27.06 Aligned_cols=28 Identities=11% Similarity=0.165 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHhCCCHHHHHhhhcCCe
Q 026892 86 GAVVVRRFYAGINGRDLASVEELIADDC 113 (231)
Q Consensus 86 ~~~lVr~fydAfN~gDleal~~L~A~Dv 113 (231)
.++......+||.++|.+.+..++++++
T Consensus 24 ak~~f~~i~~A~~~~D~~~l~~~~t~~~ 51 (147)
T PF04280_consen 24 AKEAFLPIQEAWAKGDLEALRPLLTEEL 51 (147)
T ss_dssp HHHTHHHHHHHHHHT-HHHHHHHB-HHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHhCHHH
Confidence 4455556667999999999999998874
No 55
>TIGR03232 benzo_1_2_benB benzoate 1,2-dioxygenase, small subunit. Benzoate 1,2-dioxygenase (EC 1.14.12.10) belongs to the larger family of aromatic ring-hydroxylating dioxygenases. Members of this family should all act on benzoate, but several have additional known activities on various benozate analogs. Some members actually may be named more suitably according to such alternate an activity, such as 2-chlorobenzoate 1,2-dioxygenase (1.14.12.13).
Probab=25.63 E-value=3.7e+02 Score=21.92 Aligned_cols=24 Identities=8% Similarity=-0.060 Sum_probs=21.4
Q ss_pred HHhCCCHHHHHhhhcCCeEEEcCC
Q 026892 96 GINGRDLASVEELIADDCVYEDLI 119 (231)
Q Consensus 96 AfN~gDleal~~L~A~DvV~~dp~ 119 (231)
.++.++++.+.+||+|||.|.-|.
T Consensus 11 LLD~~~~~eWl~L~~eD~~Y~vP~ 34 (155)
T TIGR03232 11 LLDDEQWDDWLECYRADASFWMPA 34 (155)
T ss_pred HhhhhhHHHHHHhcccCeEEEEEe
Confidence 799999999999999999887554
No 56
>PRK15360 pathogenicity island 2 effector protein SseE; Provisional
Probab=25.22 E-value=3.5e+02 Score=22.18 Aligned_cols=54 Identities=19% Similarity=0.315 Sum_probs=32.0
Q ss_pred CeeEeeeceEE-EEEEEeeCCeEEEEEEEEeeCCCCCCChHHHHHHHHHHHHHhhcccc
Q 026892 170 GKPFPFSKGCS-FYKLEVVNGKRQITYGRDIVEPAFKPGETALAAIGAVTWLLQQFPQL 227 (231)
Q Consensus 170 Gk~i~~~rG~~-vfr~d~~dGK~~Iv~~rdy~d~~~~p~~~~l~~~~~v~~~~~~~p~~ 227 (231)
|..+.. .|+. +||+ +++.+.|+..+-.-+..-.| ...++.+.-...|....|.+
T Consensus 28 G~~~~~-~g~~lvyRv--E~~eliIc~lrR~~~~~~~p-~~~~~L~~~L~~l~~~~p~l 82 (137)
T PRK15360 28 GQQFIL-SPYLVIYRI--EAKEMIICEFRRLTPGQPRP-QQLFHLLGLLRGIFVHHPQL 82 (137)
T ss_pred eEEEEE-cCEEEEEEe--cCCEEEEEEEEeccCCCCCH-HHHHHHHHHHHHHHccChHH
Confidence 555555 3444 7899 67888888877754444445 34444555555555555543
No 57
>PF06020 Roughex: Drosophila roughex protein; InterPro: IPR009259 This family consists of several roughex (RUX) proteins specific to Drosophila species. Roughex can influence the intracellular distribution of cyclin A and is therefore defined as a distinct and specialised cell cycle inhibitor for cyclin A-dependent kinase activity []. Rux is though to regulate the metaphase to anaphase transition during development [].
Probab=20.80 E-value=72 Score=29.47 Aligned_cols=49 Identities=22% Similarity=0.498 Sum_probs=38.3
Q ss_pred CcHHHHHHHHHHHHhCCCHHHHHhhhcCCeEEEcCCCCCcccCHHHHHHHHHHh
Q 026892 84 GGGAVVVRRFYAGINGRDLASVEELIADDCVYEDLIFPRPFLGRKATLDFFKKF 137 (231)
Q Consensus 84 ~~~~~lVr~fydAfN~gDleal~~L~A~DvV~~dp~~~g~~~GrdaI~a~f~~~ 137 (231)
....++|++|+..++.|.+ ..=+++||++. .++...+|..+|-.|++..
T Consensus 9 ~tp~evi~~Fi~~vddG~i---RrdLaeDCILS--~~gR~VrGa~AVTGflRtQ 57 (334)
T PF06020_consen 9 ETPSEVIHEFIQGVDDGTI---RRDLAEDCILS--FYGRNVRGAKAVTGFLRTQ 57 (334)
T ss_pred cCHHHHHHHHHhhcCcccH---hhhhhhhHhHH--HhccccccchhhHHHHHHH
Confidence 3578899999999988875 45569999984 3455688999999988753
Done!