BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026893
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3GUC|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3GUC|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Amppnp
pdb|3H8V|A Chain A, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
pdb|3H8V|B Chain B, Human Ubiquitin-Activating Enzyme 5 In Complex With Atp
Length = 292
Score = 194 bits (492), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 92/153 (60%), Positives = 108/153 (70%), Gaps = 3/153 (1%)
Query: 69 MALQRMGIVENYERIREFXXXXXXXXXXXXXXXEMLTRCGIGRLLLYDYDKVELANMNRL 128
MAL+RMGIV +YE+IR F EMLTRCGIG+LLL+DYDKVELANMNRL
Sbjct: 20 MALKRMGIVSDYEKIRTFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRL 79
Query: 129 FFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGS 188
FF+P Q G++K AA TL +INPDV+ E NITTV+ F+ FM + N +EG
Sbjct: 80 FFQPHQAGLSKVQAAEHTLRNINPDVLFEVHNYNITTVENFQHFMDRISNGGL---EEGK 136
Query: 189 GVDLVLSCVDNYEARMAVNQACNELNQTWMESG 221
VDLVLSCVDN+EARM +N ACNEL QTWMESG
Sbjct: 137 PVDLVLSCVDNFEARMTINTACNELGQTWMESG 169
>pdb|1ZFN|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZFN|D Chain D, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|A Chain A, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|B Chain B, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|C Chain C, Structural Analysis Of Escherichia Coli Thif
pdb|1ZKM|D Chain D, Structural Analysis Of Escherichia Coli Thif
Length = 253
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 104 LTRCGIGRLLLYDYDKVELANMNR-LFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162
L G+G L+L D D V L+N+ R + F E + K+ + Q L +NPD+ L +
Sbjct: 49 LAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQR 108
Query: 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELN 214
+T +L++ R D+VL C DN R +N AC LN
Sbjct: 109 LTG--------EALKDAVAR-------ADVVLDCTDNMATRQEINAACVALN 145
>pdb|1ZUD|1 Chain 1, Structure Of This-Thif Protein Complex
pdb|1ZUD|3 Chain 3, Structure Of This-Thif Protein Complex
Length = 251
Score = 53.9 bits (128), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 52/112 (46%), Gaps = 16/112 (14%)
Query: 104 LTRCGIGRLLLYDYDKVELANMNR-LFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162
L G+G L+L D D V L+N+ R + F E + K+ + Q L +NPD+ L +
Sbjct: 47 LAGAGVGTLVLADDDDVHLSNLQRQILFTTEDIDRPKSQVSQQRLTQLNPDIQLTALQQR 106
Query: 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELN 214
+T +L++ R D+VL C DN R +N AC LN
Sbjct: 107 LTG--------EALKDAVAR-------ADVVLDCTDNMATRQEINAACVALN 143
>pdb|3CMM|A Chain A, Crystal Structure Of The Uba1-Ubiquitin Complex
pdb|3CMM|C Chain C, Crystal Structure Of The Uba1-Ubiquitin Complex
Length = 1015
Score = 52.0 bits (123), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 38/113 (33%), Positives = 60/113 (53%), Gaps = 10/113 (8%)
Query: 110 GRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQG 168
G +++ D D +E +N+NR F FRP+ VG K++ A + + +NPD+ I V G
Sbjct: 455 GYIVVTDNDSIEKSNLNRQFLFRPKDVGKNKSEVAAEAVCAMNPDLK-GKINAKIDKV-G 512
Query: 169 FETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESG 221
ET + N SF S +D V + +DN +AR V++ C + +ESG
Sbjct: 513 PET--EEIFNDSFWES-----LDFVTNALDNVDARTYVDRRCVFYRKPLLESG 558
>pdb|4II2|A Chain A, Crystal Structure Of Ubiquitin Activating Enzyme 1 (uba1)
In Complex With The Ub E2 Ubc4, Ubiquitin, And Atp/mg
pdb|4II3|A Chain A, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
pdb|4II3|C Chain C, Crystal Structure Of S. Pombe Ubiquitin Activating Enzyme
1 (uba1) In Complex With Ubiquitin And Atp/mg
Length = 1001
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 57/120 (47%), Gaps = 24/120 (20%)
Query: 110 GRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQG 168
G + + D D +E +N+NR F FRP VG K++ A ++ +NP S T IT+ Q
Sbjct: 446 GHISVTDMDSIEKSNLNRQFLFRPRDVGKLKSECASTAVSIMNP-----SLTGKITSYQ- 499
Query: 169 FETFMSSLRNKSFRPSKEGSGVD-------LVLSCVDNYEARMAVNQACNELNQTWMESG 221
+ P EG D LV + +DN EARM V++ C + +ESG
Sbjct: 500 ----------ERVGPESEGIFGDEFFEKLSLVTNALDNVEARMYVDRRCVFFEKPLLESG 549
>pdb|1JWB|B Chain B, Structure Of The Covalent Acyl-Adenylate Form Of The
Moeb-Moad Protein Complex
pdb|1JWA|B Chain B, Structure Of The Atp-Bound Moeb-Moad Protein Complex
pdb|1JW9|B Chain B, Structure Of The Native Moeb-Moad Protein Complex
Length = 249
Score = 43.1 bits (100), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/112 (29%), Positives = 48/112 (42%), Gaps = 20/112 (17%)
Query: 102 EMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQ-VGMTKTDAAVQTLADINPDVVLESFT 160
+ L G+G L L D+D V L+N+ R + VG K ++A L INP +
Sbjct: 48 QYLASAGVGNLTLLDFDTVSLSNLQRQTLHSDATVGQPKVESARDALTRINPHIA----- 102
Query: 161 LNITTVQGF--ETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQAC 210
IT V + +++L + DLVL C DN R +N C
Sbjct: 103 --ITPVNALLDDAELAALIAEH----------DLVLDCTDNVAVRNQLNAGC 142
>pdb|1Y8Q|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8Q|D Chain D, Sumo E1 Activating Enzyme Sae1-Sae2-Mg-Atp Complex
pdb|1Y8R|B Chain B, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
pdb|1Y8R|E Chain E, Sumo E1 Activating Enzyme Sae1-Sae2-Sumo1-Mg-Atp Complex
Length = 640
Score = 39.7 bits (91), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 23/123 (18%)
Query: 104 LTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162
L G + L D D ++++N+NR F F+ + VG +K A +++ P + ++ +
Sbjct: 36 LVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 95
Query: 163 ITT----VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWM 218
I V+ F F+ LV++ +DN AR VN+ C + +
Sbjct: 96 IMNPDYNVEFFRQFI------------------LVMNALDNRAARNHVNRMCLAADVPLI 137
Query: 219 ESG 221
ESG
Sbjct: 138 ESG 140
>pdb|3KYC|B Chain B, Human Sumo E1 Complex With A Sumo1-Amp Mimic
Length = 660
Score = 39.3 bits (90), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 23/123 (18%)
Query: 104 LTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162
L G + L D D ++++N+NR F F+ + VG +K A +++ P + ++ +
Sbjct: 56 LVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 115
Query: 163 ITT----VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWM 218
I V+ F F+ LV++ +DN AR VN+ C + +
Sbjct: 116 IMNPDYNVEFFRQFI------------------LVMNALDNRAARNHVNRMCLAADVPLI 157
Query: 219 ESG 221
ESG
Sbjct: 158 ESG 160
>pdb|3KYD|B Chain B, Human Sumo E1~sumo1-amp Tetrahedral Intermediate Mimic
Length = 551
Score = 38.9 bits (89), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/123 (25%), Positives = 55/123 (44%), Gaps = 23/123 (18%)
Query: 104 LTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162
L G + L D D ++++N+NR F F+ + VG +K A +++ P + ++ +
Sbjct: 38 LVLTGFSHIDLIDLDTIDVSNLNRQFLFQKKHVGRSKAQVAKESVLQFYPKANIVAYHDS 97
Query: 163 ITT----VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWM 218
I V+ F F+ LV++ +DN AR VN+ C + +
Sbjct: 98 IMNPDYNVEFFRQFI------------------LVMNALDNRAARNHVNRMCLAADVPLI 139
Query: 219 ESG 221
ESG
Sbjct: 140 ESG 142
>pdb|2NVU|B Chain B, Structure Of Appbp1-Uba3~nedd8-Nedd8-Mgatp-Ubc12(C111a), A
Trapped Ubiquitin-Like Protein Activation Complex
Length = 805
Score = 36.6 bits (83), Expect = 0.013, Method: Composition-based stats.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 104 LTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPD 153
L G ++ + D D ++++N+NR F FRP+ +G K + A + L D P+
Sbjct: 430 LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN 480
>pdb|3H5N|A Chain A, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|B Chain B, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|C Chain C, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5N|D Chain D, Crystal Structure Of E. Coli Mccb + Atp
pdb|3H5R|A Chain A, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|B Chain B, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|C Chain C, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H5R|D Chain D, Crystal Structure Of E. Coli Mccb + Succinimide
pdb|3H9G|A Chain A, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|B Chain B, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|C Chain C, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9G|D Chain D, Crystal Structure Of E. Coli Mccb + Mcca-N7isoasn
pdb|3H9J|A Chain A, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|B Chain B, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|C Chain C, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9J|D Chain D, Crystal Structure Of E. Coli Mccb + Ampcpp + Semet Mcca
pdb|3H9Q|A Chain A, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|B Chain B, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|C Chain C, Crystal Structure Of E. Coli Mccb + Semet Mcca
pdb|3H9Q|D Chain D, Crystal Structure Of E. Coli Mccb + Semet Mcca
Length = 353
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 103 MLTRCGIGRLLLYDYDKVELANMNR-LFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161
+L GIG ++L D D++E N+ R + F + VG KT+ + L N ++ + L
Sbjct: 136 ILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIAL 195
Query: 162 NI 163
NI
Sbjct: 196 NI 197
>pdb|3H5A|A Chain A, Crystal Structure Of E. Coli Mccb
pdb|3H5A|B Chain B, Crystal Structure Of E. Coli Mccb
pdb|3H5A|C Chain C, Crystal Structure Of E. Coli Mccb
pdb|3H5A|D Chain D, Crystal Structure Of E. Coli Mccb
Length = 358
Score = 35.8 bits (81), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 33/62 (53%), Gaps = 1/62 (1%)
Query: 103 MLTRCGIGRLLLYDYDKVELANMNR-LFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161
+L GIG ++L D D++E N+ R + F + VG KT+ + L N ++ + L
Sbjct: 133 ILATSGIGEIILIDNDQIENTNLTRQVLFSEDDVGKNKTEVIKRELLKRNSEISVSEIAL 192
Query: 162 NI 163
NI
Sbjct: 193 NI 194
>pdb|3DBL|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
pdb|3DBL|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190wt-Nedd8ala72gln)
Length = 434
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 104 LTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPD 153
L G ++ + D D ++++N+NR F FRP+ +G K + A + L D P+
Sbjct: 59 LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN 109
>pdb|1R4M|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4M|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
pdb|1R4N|B Chain B, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|D Chain D, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|F Chain F, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
pdb|1R4N|H Chain H, Appbp1-Uba3-Nedd8, An E1-Ubiquitin-Like Protein Complex
With Atp
Length = 431
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 104 LTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPD 153
L G ++ + D D ++++N+NR F FRP+ +G K + A + L D P+
Sbjct: 56 LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN 106
>pdb|3DBR|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
pdb|3DBR|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190gln-Nedd8ala72arg)
Length = 434
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 104 LTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPD 153
L G ++ + D D ++++N+NR F FRP+ +G K + A + L D P+
Sbjct: 59 LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN 109
>pdb|3GZN|B Chain B, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
pdb|3GZN|D Chain D, Structure Of Nedd8-Activating Enzyme In Complex With Nedd8
And Mln4924
Length = 463
Score = 35.0 bits (79), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 108 GIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPD 153
G ++ + D D ++++N+NR F FRP+ +G K + A + L D P+
Sbjct: 92 GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN 138
>pdb|1TT5|B Chain B, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
pdb|1TT5|D Chain D, Structure Of Appbp1-Uba3-Ubc12n26: A Unique E1-E2
Interaction Required For Optimal Conjugation Of The
Ubiquitin-Like Protein Nedd8
Length = 434
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 108 GIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPD 153
G ++ + D D ++++N+NR F FRP+ +G K + A + L D P+
Sbjct: 63 GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN 109
>pdb|3DBH|B Chain B, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|D Chain D, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|F Chain F, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
pdb|3DBH|H Chain H, Structural Dissection Of A Gating Mechanism Preventing
Misactivation Of Ubiquitin By Nedd8's E1 (Appbp1-
Uba3arg190ala-Nedd8ala72arg)
Length = 434
Score = 35.0 bits (79), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 17/51 (33%), Positives = 30/51 (58%), Gaps = 1/51 (1%)
Query: 104 LTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPD 153
L G ++ + D D ++++N+NR F FRP+ +G K + A + L D P+
Sbjct: 59 LALSGFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN 109
>pdb|1YOV|B Chain B, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
pdb|1YOV|D Chain D, Insights Into The Ubiquitin Transfer Cascade From The
Refined Structure Of The Activating Enzyme For Nedd8
Length = 444
Score = 35.0 bits (79), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%), Gaps = 1/47 (2%)
Query: 108 GIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPD 153
G ++ + D D ++++N+NR F FRP+ +G K + A + L D P+
Sbjct: 73 GFRQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKAEVAAEFLNDRVPN 119
>pdb|3H5K|A Chain A, Crystal Structure Of The Ribosome Inactivating Protein
Pdl1
pdb|3H5K|B Chain B, Crystal Structure Of The Ribosome Inactivating Protein
Pdl1
pdb|3LE7|A Chain A, Crystal Structure Of Pd-L1 From P. Dioica In Complex With
Adenine
pdb|3LE7|B Chain B, Crystal Structure Of Pd-L1 From P. Dioica In Complex With
Adenine
Length = 261
Score = 28.9 bits (63), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLV 193
TT+ + TFM SLRN++ PS + G+ ++
Sbjct: 11 TTINKYATFMESLRNEAKDPSLQCYGIPML 40
>pdb|1GIK|A Chain A, Pokeweed Antiviral Protein From Seeds
pdb|1J1Q|A Chain A, Structure Of Pokeweed Antiviral Protein From Seeds
(Pap-S1)
pdb|1J1R|A Chain A, Structure Of Pokeweed Antiviral Protein From Seeds
(Pap-S1) Complexed With Adenine
pdb|1J1S|A Chain A, Pokeweed Antiviral Protein From Seeds (Pap-S1) Complexed
With Formycin
Length = 261
Score = 27.3 bits (59), Expect = 7.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 158 SFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLV 193
+F T+ + TFM SLRN++ PS + G+ ++
Sbjct: 5 TFDAGNATINKYATFMESLRNEAKDPSLKCYGIPML 40
>pdb|2Q8W|A Chain A, Crystal Structure Of Pap-S1aci, A Pokeweed Antiviral
Protein From Seeds Of Phytolacca Acinosa
Length = 261
Score = 26.9 bits (58), Expect = 8.8, Method: Compositional matrix adjust.
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 158 SFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLV 193
+F T+ + TFM SLRN++ PS + G+ ++
Sbjct: 5 TFDAGNATINKYATFMESLRNEAKDPSLKCYGIPML 40
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.130 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,315,387
Number of Sequences: 62578
Number of extensions: 167230
Number of successful extensions: 620
Number of sequences better than 100.0: 24
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 599
Number of HSP's gapped (non-prelim): 25
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)