Query 026893
Match_columns 231
No_of_seqs 242 out of 1527
Neff 7.6
Searched_HMMs 46136
Date Fri Mar 29 14:12:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026893.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026893hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG2336 Molybdopterin biosynth 100.0 6.1E-46 1.3E-50 314.7 12.6 220 1-226 1-220 (422)
2 PRK06153 hypothetical protein; 100.0 4.3E-42 9.2E-47 306.7 17.9 190 16-223 104-300 (393)
3 cd01492 Aos1_SUMO Ubiquitin ac 100.0 3.7E-38 8E-43 261.9 17.2 150 63-231 2-152 (197)
4 cd01485 E1-1_like Ubiquitin ac 100.0 5.8E-38 1.3E-42 261.0 14.7 151 64-231 1-155 (198)
5 TIGR02355 moeB molybdopterin s 100.0 4.8E-38 1E-42 268.5 14.3 152 62-229 2-154 (240)
6 PRK05690 molybdopterin biosynt 100.0 4.8E-38 1E-42 269.4 13.6 158 55-230 5-163 (245)
7 TIGR02356 adenyl_thiF thiazole 100.0 8E-38 1.7E-42 260.9 14.4 152 64-231 1-153 (202)
8 PRK08223 hypothetical protein; 100.0 2.2E-37 4.8E-42 268.5 16.8 152 61-230 6-160 (287)
9 cd00757 ThiF_MoeB_HesA_family 100.0 2.2E-37 4.9E-42 262.7 15.1 151 64-230 1-152 (228)
10 PRK05597 molybdopterin biosynt 100.0 1.1E-36 2.5E-41 273.6 15.2 155 61-231 5-160 (355)
11 PRK08328 hypothetical protein; 100.0 2.6E-36 5.6E-41 256.6 16.2 150 63-230 8-159 (231)
12 PRK07411 hypothetical protein; 100.0 1.5E-36 3.3E-41 275.8 14.9 153 62-230 16-169 (390)
13 PRK07878 molybdopterin biosynt 100.0 3E-36 6.6E-41 274.1 15.7 159 54-230 14-173 (392)
14 cd01491 Ube1_repeat1 Ubiquitin 100.0 1.8E-36 3.8E-41 263.8 13.3 146 64-231 1-147 (286)
15 PRK05600 thiamine biosynthesis 100.0 3.5E-36 7.5E-41 271.4 15.0 159 54-230 13-172 (370)
16 PRK12475 thiamine/molybdopteri 100.0 4.6E-35 1E-39 261.4 15.3 152 63-230 3-157 (338)
17 PRK07688 thiamine/molybdopteri 100.0 1.8E-34 3.8E-39 257.7 14.8 152 63-230 3-157 (339)
18 PRK15116 sulfur acceptor prote 100.0 6.2E-34 1.3E-38 245.8 15.3 152 54-224 4-156 (268)
19 PRK14851 hypothetical protein; 100.0 8.1E-34 1.8E-38 271.9 16.6 153 61-231 22-177 (679)
20 PF00899 ThiF: ThiF family; I 100.0 1.8E-33 4E-38 220.2 15.5 132 84-230 1-133 (135)
21 cd01493 APPBP1_RUB Ubiquitin a 100.0 1.3E-33 2.7E-38 258.1 15.8 152 63-231 1-154 (425)
22 PRK08762 molybdopterin biosynt 100.0 3.4E-33 7.4E-38 253.0 16.4 159 54-230 107-266 (376)
23 cd01484 E1-2_like Ubiquitin ac 100.0 4.4E-33 9.4E-38 236.7 13.6 131 87-230 1-132 (234)
24 COG0476 ThiF Dinucleotide-util 100.0 9.7E-33 2.1E-37 237.6 14.5 154 62-231 8-162 (254)
25 COG1179 Dinucleotide-utilizing 100.0 6.9E-33 1.5E-37 231.7 13.0 147 62-225 10-157 (263)
26 TIGR01408 Ube1 ubiquitin-activ 100.0 6.5E-33 1.4E-37 274.6 14.1 150 60-231 2-154 (1008)
27 TIGR01408 Ube1 ubiquitin-activ 100.0 1.3E-32 2.8E-37 272.5 16.1 155 62-230 399-559 (1008)
28 KOG2017 Molybdopterin synthase 100.0 1.1E-33 2.3E-38 245.8 7.4 158 54-229 38-196 (427)
29 PRK14852 hypothetical protein; 100.0 1.4E-32 3E-37 267.9 15.9 151 63-231 313-466 (989)
30 cd00755 YgdL_like Family of ac 100.0 2.6E-32 5.6E-37 231.6 15.3 135 77-225 3-138 (231)
31 cd01483 E1_enzyme_family Super 100.0 6.1E-32 1.3E-36 213.4 15.3 130 87-231 1-131 (143)
32 cd01489 Uba2_SUMO Ubiquitin ac 100.0 7.1E-32 1.5E-36 237.6 14.9 131 87-231 1-132 (312)
33 PRK08644 thiamine biosynthesis 100.0 1.1E-31 2.3E-36 225.5 14.3 144 69-228 13-157 (212)
34 PRK07877 hypothetical protein; 100.0 4.4E-31 9.6E-36 253.8 15.2 144 62-224 87-231 (722)
35 cd01488 Uba3_RUB Ubiquitin act 100.0 5.1E-31 1.1E-35 229.9 13.1 128 87-230 1-137 (291)
36 cd01490 Ube1_repeat2 Ubiquitin 100.0 5.5E-30 1.2E-34 233.7 14.3 133 87-230 1-139 (435)
37 TIGR01381 E1_like_apg7 E1-like 100.0 1.3E-30 2.9E-35 244.7 8.9 156 70-231 323-489 (664)
38 KOG2013 SMT3/SUMO-activating c 100.0 3.2E-30 7E-35 231.8 9.4 140 78-231 5-145 (603)
39 cd01487 E1_ThiF_like E1_ThiF_l 100.0 2.5E-29 5.5E-34 205.1 13.6 129 87-230 1-130 (174)
40 TIGR02354 thiF_fam2 thiamine b 100.0 5.9E-29 1.3E-33 207.1 15.4 146 67-229 4-150 (200)
41 cd01486 Apg7 Apg7 is an E1-lik 100.0 8.5E-29 1.8E-33 215.3 14.7 133 87-231 1-149 (307)
42 KOG2014 SMT3/SUMO-activating c 100.0 1.5E-28 3.3E-33 210.4 11.3 157 54-231 5-162 (331)
43 TIGR03736 PRTRC_ThiF PRTRC sys 100.0 3.2E-28 6.8E-33 207.6 12.7 130 83-231 9-151 (244)
44 TIGR03603 cyclo_dehy_ocin bact 100.0 4.2E-28 9.1E-33 214.8 13.7 139 63-230 53-194 (318)
45 PTZ00245 ubiquitin activating 99.9 2.2E-27 4.8E-32 200.5 12.5 101 62-165 6-106 (287)
46 KOG2015 NEDD8-activating compl 99.9 7.5E-27 1.6E-31 201.6 11.5 138 77-230 32-180 (422)
47 KOG2018 Predicted dinucleotide 99.9 1.1E-26 2.4E-31 200.0 10.5 131 77-221 66-197 (430)
48 KOG2012 Ubiquitin activating e 99.9 5.8E-26 1.3E-30 214.6 6.8 153 62-228 410-568 (1013)
49 KOG2012 Ubiquitin activating e 99.9 2.1E-25 4.5E-30 210.9 10.0 152 57-230 12-164 (1013)
50 KOG2016 NEDD8-activating compl 99.9 4.6E-23 1E-27 184.2 8.8 154 62-231 7-161 (523)
51 KOG2337 Ubiquitin activating E 99.6 3.5E-15 7.6E-20 136.1 8.3 156 70-230 325-490 (669)
52 TIGR03693 ocin_ThiF_like putat 99.5 4E-14 8.7E-19 132.9 11.2 138 63-230 104-250 (637)
53 COG4015 Predicted dinucleotide 98.8 4E-08 8.7E-13 78.3 9.2 122 86-228 19-146 (217)
54 COG1748 LYS9 Saccharopine dehy 98.6 3E-07 6.5E-12 83.5 9.4 102 86-225 2-103 (389)
55 PRK06718 precorrin-2 dehydroge 98.4 7.6E-06 1.7E-10 68.3 11.8 98 82-224 7-104 (202)
56 PRK12549 shikimate 5-dehydroge 98.3 3.5E-06 7.5E-11 73.9 8.1 56 83-156 125-180 (284)
57 PF01488 Shikimate_DH: Shikima 98.2 7.7E-06 1.7E-10 63.8 8.8 81 80-201 7-87 (135)
58 TIGR01470 cysG_Nterm siroheme 98.2 2.1E-05 4.5E-10 65.9 11.1 102 83-228 7-108 (205)
59 PF03435 Saccharop_dh: Sacchar 98.2 8.3E-06 1.8E-10 74.1 9.2 97 88-221 1-98 (386)
60 PF13241 NAD_binding_7: Putati 98.1 1.3E-05 2.8E-10 59.6 7.7 94 82-226 4-97 (103)
61 PRK06719 precorrin-2 dehydroge 98.0 0.00014 3E-09 58.4 11.9 85 82-213 10-94 (157)
62 PRK05562 precorrin-2 dehydroge 97.9 0.00027 5.9E-09 59.9 11.6 100 82-225 22-121 (223)
63 PRK14027 quinate/shikimate deh 97.8 6.8E-05 1.5E-09 65.8 6.7 38 83-120 125-162 (283)
64 PRK12548 shikimate 5-dehydroge 97.7 0.00015 3.2E-09 63.8 8.5 37 83-119 124-160 (289)
65 TIGR01809 Shik-DH-AROM shikima 97.6 0.00018 3.9E-09 63.1 7.1 36 83-118 123-158 (282)
66 PRK00258 aroE shikimate 5-dehy 97.5 0.00039 8.4E-09 60.7 7.8 37 83-119 121-157 (278)
67 COG1648 CysG Siroheme synthase 97.5 0.00061 1.3E-08 57.3 8.3 100 82-225 9-108 (210)
68 PF03446 NAD_binding_2: NAD bi 97.4 0.0014 3.1E-08 52.5 9.4 119 86-225 2-123 (163)
69 PRK10637 cysG siroheme synthas 97.4 0.0016 3.5E-08 60.9 10.8 100 82-225 9-108 (457)
70 COG0569 TrkA K+ transport syst 97.4 0.0023 5E-08 54.3 10.8 99 86-222 1-100 (225)
71 PRK05854 short chain dehydroge 97.4 0.0015 3.3E-08 57.7 10.0 89 83-197 12-101 (313)
72 PLN02819 lysine-ketoglutarate 97.3 0.0014 3E-08 66.7 10.3 100 83-221 567-679 (1042)
73 cd01065 NAD_bind_Shikimate_DH 97.3 0.00047 1E-08 54.2 5.7 37 83-119 17-53 (155)
74 PRK09242 tropinone reductase; 97.3 0.0022 4.7E-08 54.4 9.8 90 83-198 7-97 (257)
75 PRK06197 short chain dehydroge 97.3 0.0018 3.8E-08 56.7 9.5 91 81-197 12-103 (306)
76 cd05213 NAD_bind_Glutamyl_tRNA 97.3 0.0009 1.9E-08 59.4 7.6 97 83-223 176-275 (311)
77 COG0169 AroE Shikimate 5-dehyd 97.3 0.0011 2.4E-08 58.2 7.7 108 84-220 125-248 (283)
78 PTZ00142 6-phosphogluconate de 97.3 0.0032 6.9E-08 59.1 11.2 125 86-225 2-130 (470)
79 COG0373 HemA Glutamyl-tRNA red 97.2 0.00056 1.2E-08 62.8 5.7 78 80-201 173-250 (414)
80 COG0300 DltE Short-chain dehyd 97.2 0.0029 6.4E-08 54.9 9.9 89 83-198 4-93 (265)
81 cd05291 HicDH_like L-2-hydroxy 97.2 0.00091 2E-08 59.2 7.0 48 86-151 1-49 (306)
82 PRK07063 short chain dehydroge 97.2 0.0025 5.5E-08 54.1 9.4 91 82-198 4-95 (260)
83 TIGR03882 cyclo_dehyd_2 bacter 97.2 0.00024 5.2E-09 58.9 2.9 54 77-130 97-160 (193)
84 PRK07062 short chain dehydroge 97.2 0.0035 7.6E-08 53.4 10.2 90 83-198 6-96 (265)
85 PRK13940 glutamyl-tRNA reducta 97.2 0.00064 1.4E-08 62.8 5.9 37 82-118 178-214 (414)
86 KOG4169 15-hydroxyprostaglandi 97.2 0.0019 4E-08 54.8 8.0 120 83-229 3-132 (261)
87 PRK12749 quinate/shikimate deh 97.2 0.002 4.3E-08 56.7 8.6 36 83-118 122-157 (288)
88 COG1086 Predicted nucleoside-d 97.2 0.0031 6.8E-08 59.7 10.2 109 78-216 243-369 (588)
89 PRK09599 6-phosphogluconate de 97.2 0.0021 4.6E-08 56.6 8.7 120 87-225 2-123 (301)
90 PLN02350 phosphogluconate dehy 97.2 0.0042 9E-08 58.6 10.9 125 86-225 7-136 (493)
91 PRK08251 short chain dehydroge 97.2 0.0043 9.3E-08 52.2 10.1 87 85-197 2-89 (248)
92 cd01075 NAD_bind_Leu_Phe_Val_D 97.1 0.0029 6.4E-08 52.6 8.6 36 82-118 25-60 (200)
93 PRK04148 hypothetical protein; 97.1 0.011 2.5E-07 46.1 11.1 98 84-225 16-113 (134)
94 PF00056 Ldh_1_N: lactate/mala 97.1 0.003 6.5E-08 49.6 7.6 75 86-199 1-79 (141)
95 PF00106 adh_short: short chai 97.0 0.0042 9.1E-08 48.9 8.3 89 86-199 1-90 (167)
96 PRK07831 short chain dehydroge 97.0 0.006 1.3E-07 51.9 9.8 91 82-198 14-106 (262)
97 PRK00066 ldh L-lactate dehydro 97.0 0.003 6.4E-08 56.3 8.0 50 85-152 6-56 (315)
98 PF02254 TrkA_N: TrkA-N domain 97.0 0.0067 1.5E-07 45.2 8.7 86 88-213 1-86 (116)
99 PRK07231 fabG 3-ketoacyl-(acyl 97.0 0.0051 1.1E-07 51.5 8.8 87 83-198 3-90 (251)
100 PRK07523 gluconate 5-dehydroge 97.0 0.0071 1.5E-07 51.2 9.7 89 82-198 7-96 (255)
101 PF01118 Semialdhyde_dh: Semia 97.0 0.0041 8.8E-08 47.4 7.4 97 87-223 1-99 (121)
102 TIGR00872 gnd_rel 6-phosphoglu 96.9 0.0031 6.7E-08 55.6 7.5 119 87-225 2-122 (298)
103 PRK14106 murD UDP-N-acetylmura 96.9 0.0036 7.7E-08 57.9 8.2 94 83-218 3-96 (450)
104 TIGR00873 gnd 6-phosphoglucona 96.9 0.0086 1.9E-07 56.2 10.6 125 87-225 1-127 (467)
105 cd05290 LDH_3 A subgroup of L- 96.9 0.0041 9E-08 55.2 8.0 48 87-152 1-49 (307)
106 PRK08217 fabG 3-ketoacyl-(acyl 96.9 0.0083 1.8E-07 50.3 9.5 88 83-198 3-91 (253)
107 PRK05875 short chain dehydroge 96.9 0.0088 1.9E-07 51.2 9.7 90 83-198 5-95 (276)
108 TIGR01832 kduD 2-deoxy-D-gluco 96.9 0.0084 1.8E-07 50.4 9.3 85 83-197 3-88 (248)
109 PRK03562 glutathione-regulated 96.9 0.0098 2.1E-07 57.7 10.8 89 85-213 400-488 (621)
110 PRK05867 short chain dehydroge 96.9 0.0071 1.5E-07 51.2 8.8 87 83-197 7-94 (253)
111 PRK12384 sorbitol-6-phosphate 96.8 0.012 2.7E-07 49.7 10.2 87 85-197 2-89 (259)
112 PF02737 3HCDH_N: 3-hydroxyacy 96.8 0.0038 8.2E-08 51.1 6.7 34 87-121 1-34 (180)
113 PRK06194 hypothetical protein; 96.8 0.01 2.2E-07 51.1 9.7 88 83-198 4-92 (287)
114 PRK08339 short chain dehydroge 96.8 0.011 2.5E-07 50.6 9.7 87 83-197 6-93 (263)
115 PRK08213 gluconate 5-dehydroge 96.8 0.0089 1.9E-07 50.7 8.9 90 81-198 8-98 (259)
116 PRK06949 short chain dehydroge 96.8 0.012 2.6E-07 49.7 9.5 88 83-198 7-95 (258)
117 PRK09496 trkA potassium transp 96.8 0.018 4E-07 53.1 11.5 98 84-219 230-327 (453)
118 PRK07478 short chain dehydroge 96.7 0.012 2.5E-07 49.8 9.3 88 83-198 4-92 (254)
119 cd01078 NAD_bind_H4MPT_DH NADP 96.7 0.0037 7.9E-08 51.4 6.0 84 82-201 25-109 (194)
120 PRK09186 flagellin modificatio 96.7 0.013 2.9E-07 49.3 9.5 89 83-197 2-91 (256)
121 cd05311 NAD_bind_2_malic_enz N 96.7 0.0017 3.7E-08 55.1 3.9 38 82-119 22-61 (226)
122 PRK12939 short chain dehydroge 96.7 0.013 2.8E-07 49.0 9.4 88 83-198 5-93 (250)
123 PRK12490 6-phosphogluconate de 96.7 0.009 2E-07 52.6 8.6 120 87-225 2-123 (299)
124 PRK06138 short chain dehydroge 96.7 0.015 3.1E-07 48.9 9.5 87 83-198 3-90 (252)
125 PF02719 Polysacc_synt_2: Poly 96.7 0.0031 6.7E-08 55.5 5.4 38 88-125 1-39 (293)
126 PRK05866 short chain dehydroge 96.7 0.013 2.9E-07 51.2 9.5 88 82-197 37-125 (293)
127 PRK06139 short chain dehydroge 96.7 0.0091 2E-07 53.3 8.6 89 82-198 4-93 (330)
128 PTZ00117 malate dehydrogenase; 96.7 0.0059 1.3E-07 54.4 7.3 35 84-118 4-38 (319)
129 PRK12826 3-ketoacyl-(acyl-carr 96.7 0.014 3.1E-07 48.8 9.3 87 83-197 4-91 (251)
130 PRK06940 short chain dehydroge 96.7 0.016 3.6E-07 49.9 9.9 84 85-198 2-85 (275)
131 cd01080 NAD_bind_m-THF_DH_Cycl 96.7 0.003 6.5E-08 51.2 4.8 35 82-117 41-76 (168)
132 PRK05708 2-dehydropantoate 2-r 96.6 0.0081 1.7E-07 53.1 7.8 33 85-118 2-34 (305)
133 cd01076 NAD_bind_1_Glu_DH NAD( 96.6 0.0087 1.9E-07 50.9 7.6 38 81-118 27-64 (227)
134 cd05211 NAD_bind_Glu_Leu_Phe_V 96.6 0.0091 2E-07 50.4 7.6 38 82-119 20-57 (217)
135 PRK05876 short chain dehydroge 96.6 0.017 3.7E-07 49.9 9.6 87 83-197 4-91 (275)
136 PRK13394 3-hydroxybutyrate deh 96.6 0.015 3.3E-07 49.1 9.0 88 83-198 5-93 (262)
137 PRK08277 D-mannonate oxidoredu 96.6 0.019 4.2E-07 49.2 9.8 89 82-198 7-96 (278)
138 PRK12429 3-hydroxybutyrate deh 96.6 0.02 4.2E-07 48.2 9.7 88 83-198 2-90 (258)
139 PLN00203 glutamyl-tRNA reducta 96.6 0.0042 9.2E-08 58.9 6.1 36 83-118 264-299 (519)
140 PRK06198 short chain dehydroge 96.6 0.017 3.7E-07 48.8 9.3 89 83-198 4-93 (260)
141 PF03807 F420_oxidored: NADP o 96.6 0.014 3E-07 42.1 7.5 90 87-221 1-94 (96)
142 PRK08063 enoyl-(acyl carrier p 96.6 0.012 2.6E-07 49.4 8.3 88 83-197 2-90 (250)
143 TIGR00507 aroE shikimate 5-deh 96.6 0.0085 1.8E-07 52.0 7.5 36 83-119 115-150 (270)
144 PTZ00082 L-lactate dehydrogena 96.6 0.0081 1.8E-07 53.6 7.5 37 83-119 4-40 (321)
145 PLN02253 xanthoxin dehydrogena 96.6 0.015 3.3E-07 49.9 9.1 88 82-198 15-103 (280)
146 PRK07774 short chain dehydroge 96.6 0.017 3.6E-07 48.5 9.1 88 83-198 4-92 (250)
147 PRK07666 fabG 3-ketoacyl-(acyl 96.6 0.016 3.4E-07 48.5 8.8 87 83-197 5-92 (239)
148 PRK06196 oxidoreductase; Provi 96.5 0.014 3.1E-07 51.3 8.8 83 83-197 24-107 (315)
149 PRK07453 protochlorophyllide o 96.5 0.018 3.9E-07 50.8 9.4 86 84-197 5-91 (322)
150 PRK09496 trkA potassium transp 96.5 0.032 6.9E-07 51.5 11.5 94 87-219 2-96 (453)
151 PRK06124 gluconate 5-dehydroge 96.5 0.019 4E-07 48.6 9.2 88 83-198 9-97 (256)
152 PRK06172 short chain dehydroge 96.5 0.02 4.2E-07 48.3 9.2 88 83-198 5-93 (253)
153 PLN03209 translocon at the inn 96.5 0.03 6.5E-07 53.7 11.3 111 81-224 76-210 (576)
154 PRK05872 short chain dehydroge 96.5 0.025 5.3E-07 49.4 10.0 87 83-198 7-94 (296)
155 PRK08085 gluconate 5-dehydroge 96.5 0.02 4.3E-07 48.4 9.2 88 83-198 7-95 (254)
156 cd05293 LDH_1 A subgroup of L- 96.5 0.01 2.3E-07 52.7 7.7 50 85-152 3-53 (312)
157 PRK08643 acetoin reductase; Va 96.5 0.022 4.7E-07 48.1 9.4 85 85-197 2-87 (256)
158 PRK06181 short chain dehydroge 96.5 0.025 5.4E-07 48.0 9.7 85 86-198 2-87 (263)
159 PRK08265 short chain dehydroge 96.5 0.019 4E-07 49.0 9.0 84 83-197 4-88 (261)
160 PRK08589 short chain dehydroge 96.5 0.02 4.3E-07 49.2 9.1 87 82-197 3-90 (272)
161 PRK03659 glutathione-regulated 96.5 0.026 5.6E-07 54.6 10.7 90 85-214 400-489 (601)
162 TIGR03206 benzo_BadH 2-hydroxy 96.5 0.022 4.8E-07 47.7 9.2 88 83-198 1-89 (250)
163 PRK07576 short chain dehydroge 96.5 0.019 4.2E-07 49.1 8.9 89 81-197 5-94 (264)
164 cd05191 NAD_bind_amino_acid_DH 96.5 0.0046 1E-07 44.2 4.2 39 82-120 20-58 (86)
165 PRK06125 short chain dehydroge 96.4 0.022 4.7E-07 48.3 9.0 84 83-197 5-89 (259)
166 PRK00045 hemA glutamyl-tRNA re 96.4 0.0059 1.3E-07 56.5 5.8 36 83-118 180-215 (423)
167 cd00300 LDH_like L-lactate deh 96.4 0.011 2.3E-07 52.3 7.1 74 88-199 1-76 (300)
168 PRK07814 short chain dehydroge 96.4 0.026 5.6E-07 48.1 9.2 88 83-198 8-96 (263)
169 PRK07066 3-hydroxybutyryl-CoA 96.4 0.017 3.6E-07 51.7 8.2 33 86-119 8-40 (321)
170 PLN02427 UDP-apiose/xylose syn 96.4 0.017 3.7E-07 52.3 8.4 37 81-117 10-47 (386)
171 PRK06500 short chain dehydroge 96.4 0.023 4.9E-07 47.6 8.7 35 83-118 4-39 (249)
172 PRK12829 short chain dehydroge 96.4 0.024 5.2E-07 47.9 8.9 90 79-198 5-95 (264)
173 TIGR03589 PseB UDP-N-acetylglu 96.4 0.07 1.5E-06 47.3 12.2 36 83-118 2-39 (324)
174 PRK05476 S-adenosyl-L-homocyst 96.4 0.011 2.4E-07 54.7 7.2 38 82-120 209-246 (425)
175 PRK07035 short chain dehydroge 96.4 0.027 5.9E-07 47.4 9.1 87 83-197 6-93 (252)
176 PRK07326 short chain dehydroge 96.4 0.026 5.6E-07 46.9 8.9 86 84-198 5-91 (237)
177 PRK07097 gluconate 5-dehydroge 96.4 0.026 5.7E-07 48.1 9.0 89 82-198 7-96 (265)
178 PRK00048 dihydrodipicolinate r 96.4 0.02 4.3E-07 49.5 8.3 91 86-225 2-94 (257)
179 PRK07677 short chain dehydroge 96.3 0.03 6.6E-07 47.3 9.4 84 86-197 2-86 (252)
180 PRK08618 ornithine cyclodeamin 96.3 0.012 2.7E-07 52.5 7.2 98 83-223 125-223 (325)
181 PRK08945 putative oxoacyl-(acy 96.3 0.031 6.7E-07 47.0 9.3 38 81-119 8-46 (247)
182 PRK06113 7-alpha-hydroxysteroi 96.3 0.03 6.6E-07 47.3 9.3 89 82-198 8-97 (255)
183 PRK06522 2-dehydropantoate 2-r 96.3 0.023 5.1E-07 49.5 8.8 31 87-118 2-32 (304)
184 PRK05565 fabG 3-ketoacyl-(acyl 96.3 0.028 6.1E-07 46.8 9.0 89 83-198 3-92 (247)
185 PLN02602 lactate dehydrogenase 96.3 0.012 2.6E-07 53.2 7.1 32 86-117 38-70 (350)
186 PRK07024 short chain dehydroge 96.3 0.026 5.6E-07 47.9 8.8 84 85-197 2-86 (257)
187 PRK07819 3-hydroxybutyryl-CoA 96.3 0.016 3.5E-07 50.8 7.7 34 86-120 6-39 (286)
188 PRK08594 enoyl-(acyl carrier p 96.3 0.032 7E-07 47.6 9.3 88 83-197 5-95 (257)
189 cd00401 AdoHcyase S-adenosyl-L 96.3 0.019 4.1E-07 53.1 8.3 37 83-120 200-236 (413)
190 PRK12825 fabG 3-ketoacyl-(acyl 96.3 0.031 6.7E-07 46.4 9.0 88 84-198 5-93 (249)
191 PRK12744 short chain dehydroge 96.3 0.034 7.5E-07 47.0 9.3 92 83-198 6-98 (257)
192 PRK06914 short chain dehydroge 96.3 0.033 7.1E-07 47.7 9.3 87 84-197 2-89 (280)
193 TIGR02622 CDP_4_6_dhtase CDP-g 96.3 0.052 1.1E-06 48.4 10.9 35 83-118 2-37 (349)
194 PRK07890 short chain dehydroge 96.2 0.039 8.5E-07 46.5 9.5 87 83-197 3-90 (258)
195 PRK07109 short chain dehydroge 96.2 0.033 7.2E-07 49.7 9.4 89 82-198 5-94 (334)
196 PRK07067 sorbitol dehydrogenas 96.2 0.034 7.3E-07 47.0 9.1 35 83-118 4-39 (257)
197 PRK06935 2-deoxy-D-gluconate 3 96.2 0.037 7.9E-07 46.9 9.3 87 82-197 12-99 (258)
198 PRK07074 short chain dehydroge 96.2 0.038 8.3E-07 46.7 9.4 84 85-198 2-86 (257)
199 PLN02240 UDP-glucose 4-epimera 96.2 0.082 1.8E-06 46.8 11.9 33 83-116 3-36 (352)
200 PRK07984 enoyl-(acyl carrier p 96.2 0.034 7.4E-07 47.8 9.2 86 83-197 4-92 (262)
201 TIGR02992 ectoine_eutC ectoine 96.2 0.016 3.4E-07 51.8 7.2 76 85-200 129-205 (326)
202 PRK05717 oxidoreductase; Valid 96.2 0.03 6.5E-07 47.4 8.7 36 82-118 7-43 (255)
203 PRK06223 malate dehydrogenase; 96.2 0.031 6.7E-07 49.3 9.0 32 86-117 3-34 (307)
204 PRK06130 3-hydroxybutyryl-CoA 96.2 0.028 6.1E-07 49.5 8.7 33 86-119 5-37 (311)
205 PRK08416 7-alpha-hydroxysteroi 96.2 0.032 7E-07 47.4 8.8 91 81-197 4-95 (260)
206 PRK08309 short chain dehydroge 96.2 0.096 2.1E-06 42.7 11.2 100 87-216 2-101 (177)
207 PRK08628 short chain dehydroge 96.2 0.034 7.5E-07 47.0 8.9 87 83-198 5-92 (258)
208 PRK06114 short chain dehydroge 96.2 0.043 9.2E-07 46.5 9.5 89 83-198 6-95 (254)
209 PRK06841 short chain dehydroge 96.2 0.035 7.5E-07 46.8 8.8 85 83-198 13-98 (255)
210 PRK06079 enoyl-(acyl carrier p 96.2 0.026 5.6E-07 48.0 8.0 85 82-197 4-91 (252)
211 PRK00094 gpsA NAD(P)H-dependen 96.2 0.027 5.9E-07 49.6 8.4 33 86-119 2-34 (325)
212 PRK07825 short chain dehydroge 96.2 0.023 4.9E-07 48.6 7.7 83 83-197 3-86 (273)
213 PRK08303 short chain dehydroge 96.1 0.056 1.2E-06 47.6 10.2 97 83-197 6-103 (305)
214 PRK07340 ornithine cyclodeamin 96.1 0.015 3.2E-07 51.5 6.4 78 82-201 122-200 (304)
215 PRK05650 short chain dehydroge 96.1 0.05 1.1E-06 46.5 9.5 84 87-198 2-86 (270)
216 PRK12823 benD 1,6-dihydroxycyc 96.1 0.046 9.9E-07 46.3 9.1 88 81-197 4-92 (260)
217 PF00070 Pyr_redox: Pyridine n 96.1 0.024 5.3E-07 39.6 6.2 57 87-156 1-57 (80)
218 PRK06057 short chain dehydroge 96.1 0.028 6E-07 47.6 7.7 36 82-118 4-40 (255)
219 PRK08340 glucose-1-dehydrogena 96.1 0.047 1E-06 46.3 9.2 82 87-197 2-84 (259)
220 PRK08936 glucose-1-dehydrogena 96.1 0.053 1.1E-06 46.0 9.5 90 82-198 4-94 (261)
221 KOG0024 Sorbitol dehydrogenase 96.1 0.11 2.4E-06 46.3 11.5 108 85-225 170-277 (354)
222 PRK08278 short chain dehydroge 96.1 0.056 1.2E-06 46.4 9.7 95 83-198 4-99 (273)
223 PRK11880 pyrroline-5-carboxyla 96.1 0.043 9.3E-07 47.2 9.0 33 86-118 3-37 (267)
224 PRK10669 putative cation:proto 96.1 0.039 8.6E-07 52.7 9.5 88 85-212 417-504 (558)
225 PRK08226 short chain dehydroge 96.1 0.043 9.4E-07 46.5 8.9 88 82-198 3-91 (263)
226 PRK12748 3-ketoacyl-(acyl-carr 96.0 0.053 1.2E-06 45.8 9.3 98 83-197 3-103 (256)
227 KOG1201 Hydroxysteroid 17-beta 96.0 0.059 1.3E-06 47.4 9.5 89 79-196 32-121 (300)
228 TIGR01289 LPOR light-dependent 96.0 0.056 1.2E-06 47.7 9.7 87 84-197 2-89 (314)
229 PF13460 NAD_binding_10: NADH( 96.0 0.057 1.2E-06 43.2 8.9 87 88-217 1-92 (183)
230 PRK05808 3-hydroxybutyryl-CoA 96.0 0.039 8.4E-07 48.0 8.5 33 86-119 4-36 (282)
231 PRK05855 short chain dehydroge 96.0 0.039 8.4E-07 52.0 9.2 90 80-197 310-400 (582)
232 PRK12743 oxidoreductase; Provi 96.0 0.055 1.2E-06 45.8 9.3 87 85-198 2-89 (256)
233 cd05292 LDH_2 A subgroup of L- 96.0 0.025 5.4E-07 50.1 7.4 32 87-118 2-34 (308)
234 PRK12937 short chain dehydroge 96.0 0.044 9.6E-07 45.7 8.6 89 83-198 3-92 (245)
235 COG1893 ApbA Ketopantoate redu 96.0 0.037 7.9E-07 49.2 8.4 30 86-116 1-30 (307)
236 TIGR03325 BphB_TodD cis-2,3-di 96.0 0.038 8.3E-07 47.0 8.3 34 83-117 3-37 (262)
237 PRK07791 short chain dehydroge 96.0 0.047 1E-06 47.4 9.0 97 82-197 3-100 (286)
238 PRK05653 fabG 3-ketoacyl-(acyl 96.0 0.055 1.2E-06 44.9 9.1 86 84-197 4-90 (246)
239 PRK07502 cyclohexadienyl dehyd 96.0 0.032 7E-07 49.2 7.9 34 86-119 7-41 (307)
240 PRK08862 short chain dehydroge 96.0 0.048 1E-06 45.8 8.7 87 83-197 3-91 (227)
241 PRK08324 short chain dehydroge 96.0 0.09 2E-06 51.5 11.8 87 83-198 420-507 (681)
242 PRK07454 short chain dehydroge 96.0 0.063 1.4E-06 44.8 9.4 86 85-198 6-92 (241)
243 PLN02206 UDP-glucuronate decar 96.0 0.062 1.4E-06 50.0 10.1 35 82-117 116-151 (442)
244 PRK08293 3-hydroxybutyryl-CoA 95.9 0.011 2.5E-07 51.5 4.8 33 86-119 4-36 (287)
245 PRK12938 acetyacetyl-CoA reduc 95.9 0.054 1.2E-06 45.4 8.7 88 84-198 2-90 (246)
246 PRK07904 short chain dehydroge 95.9 0.099 2.2E-06 44.5 10.5 87 85-197 8-95 (253)
247 PF01210 NAD_Gly3P_dh_N: NAD-d 95.9 0.02 4.2E-07 45.6 5.7 97 87-219 1-101 (157)
248 PRK06141 ornithine cyclodeamin 95.9 0.025 5.4E-07 50.3 6.9 51 82-150 122-173 (314)
249 PF08659 KR: KR domain; Inter 95.9 0.08 1.7E-06 43.0 9.4 87 87-197 2-89 (181)
250 COG1063 Tdh Threonine dehydrog 95.9 0.091 2E-06 47.3 10.5 96 85-215 169-264 (350)
251 PRK06200 2,3-dihydroxy-2,3-dih 95.9 0.052 1.1E-06 46.1 8.5 35 83-118 4-39 (263)
252 TIGR01963 PHB_DH 3-hydroxybuty 95.8 0.072 1.6E-06 44.6 9.2 84 86-197 2-86 (255)
253 PRK12828 short chain dehydroge 95.8 0.057 1.2E-06 44.6 8.5 36 83-119 5-41 (239)
254 PRK07530 3-hydroxybutyryl-CoA 95.8 0.038 8.2E-07 48.3 7.6 32 86-118 5-36 (292)
255 KOG1205 Predicted dehydrogenas 95.8 0.07 1.5E-06 46.8 9.1 93 78-196 5-98 (282)
256 cd00762 NAD_bind_malic_enz NAD 95.8 0.057 1.2E-06 46.6 8.3 76 81-159 21-114 (254)
257 PRK08291 ectoine utilization p 95.8 0.035 7.5E-07 49.7 7.3 76 85-200 132-208 (330)
258 PRK05786 fabG 3-ketoacyl-(acyl 95.8 0.07 1.5E-06 44.4 8.8 87 83-198 3-90 (238)
259 PRK06505 enoyl-(acyl carrier p 95.8 0.074 1.6E-06 45.9 9.2 87 83-198 5-94 (271)
260 PRK13304 L-aspartate dehydroge 95.8 0.068 1.5E-06 46.3 8.9 33 86-118 2-36 (265)
261 cd05313 NAD_bind_2_Glu_DH NAD( 95.8 0.099 2.1E-06 45.2 9.8 37 82-118 35-71 (254)
262 PRK07792 fabG 3-ketoacyl-(acyl 95.8 0.097 2.1E-06 45.9 10.0 89 81-197 8-97 (306)
263 PRK08690 enoyl-(acyl carrier p 95.8 0.039 8.5E-07 47.1 7.4 87 82-197 3-92 (261)
264 PRK08993 2-deoxy-D-gluconate 3 95.8 0.077 1.7E-06 44.9 9.1 86 83-198 8-94 (253)
265 PTZ00325 malate dehydrogenase; 95.8 0.021 4.4E-07 51.1 5.7 35 83-117 6-42 (321)
266 PTZ00079 NADP-specific glutama 95.7 0.081 1.8E-06 49.4 9.7 38 82-119 234-271 (454)
267 PRK08415 enoyl-(acyl carrier p 95.7 0.089 1.9E-06 45.5 9.6 87 83-198 3-92 (274)
268 TIGR00936 ahcY adenosylhomocys 95.7 0.034 7.5E-07 51.2 7.2 37 83-120 193-229 (406)
269 PRK05599 hypothetical protein; 95.7 0.088 1.9E-06 44.5 9.3 83 87-197 2-85 (246)
270 PRK11908 NAD-dependent epimera 95.7 0.1 2.2E-06 46.4 10.2 32 86-117 2-34 (347)
271 TIGR02415 23BDH acetoin reduct 95.7 0.093 2E-06 44.0 9.4 84 86-197 1-85 (254)
272 PRK12827 short chain dehydroge 95.7 0.092 2E-06 43.7 9.4 91 83-197 4-95 (249)
273 TIGR01181 dTDP_gluc_dehyt dTDP 95.7 0.2 4.3E-06 43.2 11.7 31 87-117 1-33 (317)
274 PRK15181 Vi polysaccharide bio 95.7 0.089 1.9E-06 47.0 9.7 36 82-118 12-48 (348)
275 PLN02780 ketoreductase/ oxidor 95.7 0.096 2.1E-06 46.5 9.8 62 84-164 52-114 (320)
276 PRK09072 short chain dehydroge 95.7 0.089 1.9E-06 44.7 9.2 86 83-198 3-89 (263)
277 PRK12936 3-ketoacyl-(acyl-carr 95.7 0.089 1.9E-06 43.8 9.1 85 83-198 4-89 (245)
278 PRK01438 murD UDP-N-acetylmura 95.7 0.058 1.3E-06 50.4 8.7 35 83-118 14-48 (480)
279 PRK07531 bifunctional 3-hydrox 95.7 0.08 1.7E-06 50.0 9.7 33 86-119 5-37 (495)
280 PRK09135 pteridine reductase; 95.7 0.11 2.4E-06 43.2 9.7 89 84-198 5-94 (249)
281 PRK07533 enoyl-(acyl carrier p 95.7 0.086 1.9E-06 44.9 9.1 87 82-197 7-96 (258)
282 PRK10217 dTDP-glucose 4,6-dehy 95.7 0.17 3.8E-06 44.9 11.4 32 86-117 2-34 (355)
283 TIGR01915 npdG NADPH-dependent 95.7 0.16 3.4E-06 42.6 10.5 31 87-118 2-33 (219)
284 PRK07806 short chain dehydroge 95.7 0.087 1.9E-06 44.1 9.0 88 83-197 4-92 (248)
285 PRK07069 short chain dehydroge 95.7 0.13 2.8E-06 43.0 10.1 87 87-198 1-88 (251)
286 PRK12859 3-ketoacyl-(acyl-carr 95.7 0.085 1.8E-06 44.8 9.0 99 82-197 3-104 (256)
287 PRK08267 short chain dehydroge 95.7 0.088 1.9E-06 44.6 9.1 84 86-198 2-86 (260)
288 PRK07832 short chain dehydroge 95.7 0.092 2E-06 44.9 9.3 85 87-198 2-87 (272)
289 TIGR02632 RhaD_aldol-ADH rhamn 95.6 0.077 1.7E-06 52.0 9.8 90 83-198 412-502 (676)
290 PF01113 DapB_N: Dihydrodipico 95.6 0.044 9.6E-07 41.9 6.5 95 87-222 2-99 (124)
291 PRK08159 enoyl-(acyl carrier p 95.6 0.052 1.1E-06 46.8 7.7 89 80-197 5-96 (272)
292 PRK10538 malonic semialdehyde 95.6 0.099 2.2E-06 44.0 9.3 80 87-197 2-82 (248)
293 TIGR00518 alaDH alanine dehydr 95.6 0.027 5.9E-07 51.3 6.1 35 83-118 165-199 (370)
294 PRK07102 short chain dehydroge 95.6 0.098 2.1E-06 43.8 9.2 82 86-197 2-84 (243)
295 PRK06270 homoserine dehydrogen 95.6 0.097 2.1E-06 47.1 9.6 22 86-107 3-24 (341)
296 PRK12746 short chain dehydroge 95.6 0.06 1.3E-06 45.3 7.9 94 82-197 3-98 (254)
297 PRK06398 aldose dehydrogenase; 95.6 0.06 1.3E-06 45.8 7.8 36 82-118 3-39 (258)
298 PRK12481 2-deoxy-D-gluconate 3 95.6 0.097 2.1E-06 44.3 9.1 85 83-197 6-91 (251)
299 TIGR01202 bchC 2-desacetyl-2-h 95.6 0.082 1.8E-06 46.4 8.8 34 84-117 144-177 (308)
300 PRK12935 acetoacetyl-CoA reduc 95.6 0.09 1.9E-06 44.0 8.7 89 83-198 4-93 (247)
301 PRK09880 L-idonate 5-dehydroge 95.6 0.092 2E-06 46.7 9.2 35 84-118 169-203 (343)
302 PRK06720 hypothetical protein; 95.6 0.13 2.7E-06 41.6 9.2 36 82-118 13-49 (169)
303 COG0039 Mdh Malate/lactate deh 95.5 0.027 5.8E-07 50.1 5.6 33 86-118 1-34 (313)
304 PRK07680 late competence prote 95.5 0.068 1.5E-06 46.3 8.1 32 87-118 2-36 (273)
305 COG1062 AdhC Zn-dependent alco 95.5 0.075 1.6E-06 47.7 8.3 102 85-223 186-287 (366)
306 PRK08229 2-dehydropantoate 2-r 95.5 0.076 1.6E-06 47.3 8.6 32 86-118 3-34 (341)
307 cd01339 LDH-like_MDH L-lactate 95.5 0.091 2E-06 46.2 8.9 31 88-118 1-31 (300)
308 PF01408 GFO_IDH_MocA: Oxidore 95.5 0.11 2.5E-06 38.6 8.3 33 87-119 2-36 (120)
309 PRK07856 short chain dehydroge 95.5 0.065 1.4E-06 45.2 7.8 36 83-119 4-40 (252)
310 PRK05557 fabG 3-ketoacyl-(acyl 95.5 0.11 2.4E-06 43.0 9.1 88 83-197 3-91 (248)
311 PRK06129 3-hydroxyacyl-CoA deh 95.5 0.075 1.6E-06 46.9 8.4 33 86-119 3-35 (308)
312 PRK15461 NADH-dependent gamma- 95.5 0.048 1E-06 48.0 7.1 122 86-225 2-124 (296)
313 PRK07417 arogenate dehydrogena 95.5 0.088 1.9E-06 45.8 8.7 32 87-119 2-33 (279)
314 PRK06947 glucose-1-dehydrogena 95.5 0.12 2.7E-06 43.2 9.3 86 86-198 3-89 (248)
315 TIGR00715 precor6x_red precorr 95.5 0.18 3.8E-06 43.7 10.3 96 86-220 1-98 (256)
316 PRK12745 3-ketoacyl-(acyl-carr 95.5 0.15 3.2E-06 42.9 9.7 86 85-197 2-88 (256)
317 KOG0022 Alcohol dehydrogenase, 95.4 0.074 1.6E-06 47.3 7.8 105 74-215 181-289 (375)
318 KOG1208 Dehydrogenases with di 95.4 0.13 2.8E-06 45.8 9.6 88 82-195 32-120 (314)
319 TIGR01759 MalateDH-SF1 malate 95.4 0.035 7.6E-07 49.7 6.0 32 86-117 4-42 (323)
320 PRK09310 aroDE bifunctional 3- 95.4 0.054 1.2E-06 51.0 7.4 35 83-118 330-364 (477)
321 PRK09134 short chain dehydroge 95.4 0.13 2.7E-06 43.6 9.1 87 84-197 8-95 (258)
322 PRK06128 oxidoreductase; Provi 95.4 0.1 2.2E-06 45.5 8.7 92 81-198 51-143 (300)
323 PRK10675 UDP-galactose-4-epime 95.3 0.28 6E-06 43.2 11.5 29 87-116 2-31 (338)
324 PRK06701 short chain dehydroge 95.3 0.13 2.8E-06 44.7 9.3 91 81-198 42-133 (290)
325 PRK06545 prephenate dehydrogen 95.3 0.074 1.6E-06 48.1 7.9 33 86-119 1-33 (359)
326 PLN02166 dTDP-glucose 4,6-dehy 95.3 0.13 2.8E-06 47.8 9.7 34 84-118 119-153 (436)
327 PF02826 2-Hacid_dh_C: D-isome 95.3 0.027 5.9E-07 45.8 4.6 41 80-121 31-71 (178)
328 PRK10537 voltage-gated potassi 95.3 0.18 4E-06 46.3 10.5 89 84-214 239-327 (393)
329 PRK12921 2-dehydropantoate 2-r 95.3 0.17 3.7E-06 44.1 9.8 30 87-117 2-31 (305)
330 PRK08264 short chain dehydroge 95.3 0.078 1.7E-06 44.1 7.4 36 83-118 4-40 (238)
331 PRK14619 NAD(P)H-dependent gly 95.3 0.076 1.6E-06 46.9 7.6 34 85-119 4-37 (308)
332 PRK00811 spermidine synthase; 95.3 0.31 6.6E-06 42.7 11.4 36 84-120 76-111 (283)
333 PRK07634 pyrroline-5-carboxyla 95.3 0.14 3E-06 43.3 8.9 25 85-109 4-28 (245)
334 PRK09987 dTDP-4-dehydrorhamnos 95.3 0.1 2.3E-06 45.6 8.4 106 87-226 2-108 (299)
335 PRK06603 enoyl-(acyl carrier p 95.2 0.16 3.5E-06 43.3 9.4 87 82-197 5-94 (260)
336 PLN02653 GDP-mannose 4,6-dehyd 95.2 0.17 3.6E-06 44.8 9.7 35 83-118 4-39 (340)
337 PRK09730 putative NAD(P)-bindi 95.2 0.21 4.6E-06 41.5 9.9 85 86-198 2-88 (247)
338 PRK11559 garR tartronate semia 95.2 0.096 2.1E-06 45.7 8.0 122 86-225 3-125 (296)
339 PRK12550 shikimate 5-dehydroge 95.2 0.029 6.3E-07 49.0 4.7 36 85-120 122-157 (272)
340 PRK07985 oxidoreductase; Provi 95.2 0.15 3.2E-06 44.5 9.2 90 82-197 46-136 (294)
341 PRK07775 short chain dehydroge 95.2 0.21 4.5E-06 42.8 9.9 87 83-197 8-95 (274)
342 TIGR02279 PaaC-3OHAcCoADH 3-hy 95.2 0.081 1.8E-06 50.2 7.9 34 85-119 5-38 (503)
343 PRK13302 putative L-aspartate 95.2 0.081 1.8E-06 46.1 7.3 34 85-118 6-41 (271)
344 TIGR01505 tartro_sem_red 2-hyd 95.1 0.1 2.2E-06 45.5 8.0 120 87-224 1-121 (291)
345 PRK07889 enoyl-(acyl carrier p 95.1 0.1 2.2E-06 44.5 7.7 35 82-117 4-41 (256)
346 cd02201 FtsZ_type1 FtsZ is a G 95.1 0.12 2.7E-06 45.7 8.5 37 87-123 2-40 (304)
347 PRK08374 homoserine dehydrogen 95.1 0.095 2.1E-06 47.1 7.8 21 86-106 3-23 (336)
348 TIGR01472 gmd GDP-mannose 4,6- 95.1 0.35 7.5E-06 42.9 11.4 32 86-118 1-33 (343)
349 PRK12491 pyrroline-5-carboxyla 95.1 0.14 3.1E-06 44.5 8.7 33 85-117 2-37 (272)
350 PRK08220 2,3-dihydroxybenzoate 95.1 0.12 2.7E-06 43.2 8.2 36 83-119 6-42 (252)
351 PLN02572 UDP-sulfoquinovose sy 95.1 0.37 8.1E-06 44.8 12.0 38 80-118 42-80 (442)
352 PRK07201 short chain dehydroge 95.1 0.13 2.8E-06 49.7 9.2 89 82-198 368-457 (657)
353 cd00650 LDH_MDH_like NAD-depen 95.1 0.052 1.1E-06 46.8 5.9 32 88-119 1-36 (263)
354 CHL00194 ycf39 Ycf39; Provisio 95.1 0.14 3.1E-06 45.0 8.8 30 87-117 2-32 (317)
355 PRK08642 fabG 3-ketoacyl-(acyl 95.1 0.12 2.5E-06 43.3 7.9 31 83-114 3-34 (253)
356 PRK14618 NAD(P)H-dependent gly 95.1 0.063 1.4E-06 47.7 6.5 32 86-118 5-36 (328)
357 COG0281 SfcA Malic enzyme [Ene 95.0 0.078 1.7E-06 48.7 7.0 40 81-120 195-236 (432)
358 PRK07370 enoyl-(acyl carrier p 95.0 0.19 4.1E-06 42.8 9.2 90 83-198 4-96 (258)
359 PRK10084 dTDP-glucose 4,6 dehy 95.0 0.38 8.2E-06 42.7 11.4 31 87-117 2-33 (352)
360 TIGR01035 hemA glutamyl-tRNA r 95.0 0.031 6.7E-07 51.7 4.4 37 82-118 177-213 (417)
361 PLN02688 pyrroline-5-carboxyla 94.9 0.17 3.7E-06 43.4 8.8 29 87-115 2-33 (266)
362 PLN02657 3,8-divinyl protochlo 94.9 0.34 7.4E-06 44.3 11.1 110 85-223 60-183 (390)
363 TIGR03466 HpnA hopanoid-associ 94.9 0.16 3.5E-06 44.1 8.7 31 87-118 2-33 (328)
364 PRK07679 pyrroline-5-carboxyla 94.9 0.15 3.2E-06 44.4 8.3 32 85-116 3-37 (279)
365 PRK14031 glutamate dehydrogena 94.9 0.11 2.3E-06 48.5 7.7 38 82-119 225-262 (444)
366 COG1023 Gnd Predicted 6-phosph 94.9 0.3 6.5E-06 42.0 9.7 119 87-225 2-123 (300)
367 PRK06476 pyrroline-5-carboxyla 94.9 0.086 1.9E-06 45.2 6.8 30 87-116 2-33 (258)
368 KOG0069 Glyoxylate/hydroxypyru 94.9 0.093 2E-06 47.1 7.0 34 80-114 157-190 (336)
369 PF03949 Malic_M: Malic enzyme 94.8 0.047 1E-06 47.2 4.8 40 81-120 21-70 (255)
370 PRK02006 murD UDP-N-acetylmura 94.8 0.13 2.9E-06 48.3 8.4 36 83-119 5-40 (498)
371 PRK14030 glutamate dehydrogena 94.8 0.21 4.5E-06 46.6 9.3 38 82-119 225-262 (445)
372 PF10727 Rossmann-like: Rossma 94.8 0.042 9.2E-07 42.5 4.1 25 85-109 10-34 (127)
373 PRK08268 3-hydroxy-acyl-CoA de 94.8 0.11 2.3E-06 49.4 7.5 33 86-119 8-40 (507)
374 PLN02695 GDP-D-mannose-3',5'-e 94.8 0.18 4E-06 45.5 8.8 32 85-117 21-53 (370)
375 smart00846 Gp_dh_N Glyceraldeh 94.8 0.021 4.6E-07 45.4 2.3 108 87-212 2-110 (149)
376 PF02571 CbiJ: Precorrin-6x re 94.7 0.3 6.4E-06 42.1 9.5 97 86-220 1-99 (249)
377 PRK15059 tartronate semialdehy 94.7 0.12 2.5E-06 45.5 7.2 120 87-225 2-122 (292)
378 TIGR01179 galE UDP-glucose-4-e 94.7 0.47 1E-05 41.0 11.0 29 87-116 1-30 (328)
379 PRK01710 murD UDP-N-acetylmura 94.7 0.14 3E-06 47.8 8.1 39 80-119 9-47 (458)
380 PRK06182 short chain dehydroge 94.7 0.15 3.2E-06 43.6 7.7 81 84-198 2-83 (273)
381 PRK02705 murD UDP-N-acetylmura 94.7 0.2 4.2E-06 46.5 9.0 34 86-120 1-34 (459)
382 PRK06171 sorbitol-6-phosphate 94.7 0.18 4E-06 42.7 8.2 36 82-118 6-42 (266)
383 PRK11730 fadB multifunctional 94.7 0.087 1.9E-06 52.1 7.0 33 86-119 314-346 (715)
384 PRK11199 tyrA bifunctional cho 94.7 0.69 1.5E-05 42.1 12.4 32 86-118 99-131 (374)
385 cd08230 glucose_DH Glucose deh 94.7 0.17 3.8E-06 45.1 8.4 34 84-118 172-205 (355)
386 PLN02896 cinnamyl-alcohol dehy 94.7 0.39 8.6E-06 42.8 10.7 32 85-117 10-42 (353)
387 PRK06123 short chain dehydroge 94.7 0.24 5.3E-06 41.3 8.8 87 85-198 2-89 (248)
388 PLN03075 nicotianamine synthas 94.7 1.8 3.8E-05 38.4 14.4 37 84-120 123-160 (296)
389 cd05296 GH4_P_beta_glucosidase 94.7 0.055 1.2E-06 50.1 5.2 104 87-227 2-113 (419)
390 TIGR01850 argC N-acetyl-gamma- 94.7 0.12 2.5E-06 46.7 7.1 98 87-223 2-101 (346)
391 PRK07060 short chain dehydroge 94.6 0.16 3.6E-06 42.2 7.7 35 83-118 7-42 (245)
392 PRK13018 cell division protein 94.6 0.21 4.6E-06 45.6 8.8 37 83-119 26-64 (378)
393 PRK14620 NAD(P)H-dependent gly 94.6 0.14 3.1E-06 45.4 7.6 32 87-119 2-33 (326)
394 PRK08703 short chain dehydroge 94.6 0.36 7.9E-06 40.2 9.7 35 83-118 4-39 (239)
395 TIGR01771 L-LDH-NAD L-lactate 94.6 0.066 1.4E-06 47.4 5.3 28 90-117 1-29 (299)
396 PRK02472 murD UDP-N-acetylmura 94.6 0.093 2E-06 48.5 6.6 36 83-119 3-38 (447)
397 TIGR01500 sepiapter_red sepiap 94.6 0.38 8.2E-06 40.7 9.9 72 87-177 2-78 (256)
398 PRK08655 prephenate dehydrogen 94.6 0.24 5.2E-06 46.1 9.2 32 87-119 2-34 (437)
399 TIGR01757 Malate-DH_plant mala 94.6 0.1 2.2E-06 47.8 6.6 78 85-199 44-130 (387)
400 PRK06484 short chain dehydroge 94.6 0.18 3.8E-06 47.4 8.5 84 83-197 3-87 (520)
401 PRK06463 fabG 3-ketoacyl-(acyl 94.5 0.15 3.3E-06 43.0 7.4 82 83-197 5-87 (255)
402 PRK08125 bifunctional UDP-gluc 94.5 0.36 7.7E-06 47.2 10.8 37 82-118 312-349 (660)
403 TIGR01214 rmlD dTDP-4-dehydror 94.5 0.38 8.2E-06 41.2 9.8 30 87-117 1-31 (287)
404 PLN02256 arogenate dehydrogena 94.5 0.061 1.3E-06 47.7 4.8 52 62-119 18-69 (304)
405 PRK12439 NAD(P)H-dependent gly 94.5 0.086 1.9E-06 47.3 5.9 31 86-118 8-38 (341)
406 PLN02650 dihydroflavonol-4-red 94.4 0.44 9.6E-06 42.4 10.4 33 85-118 5-38 (351)
407 KOG1200 Mitochondrial/plastidi 94.4 0.19 4.1E-06 42.0 7.2 43 78-121 7-50 (256)
408 PLN02214 cinnamoyl-CoA reducta 94.4 0.44 9.5E-06 42.5 10.3 106 83-222 8-127 (342)
409 PRK11154 fadJ multifunctional 94.4 0.12 2.5E-06 51.1 7.0 33 86-119 310-343 (708)
410 PRK12824 acetoacetyl-CoA reduc 94.4 0.44 9.6E-06 39.5 9.8 85 86-197 3-88 (245)
411 PRK13303 L-aspartate dehydroge 94.4 0.33 7.1E-06 42.1 9.1 23 86-108 2-24 (265)
412 TIGR01373 soxB sarcosine oxida 94.4 0.073 1.6E-06 48.4 5.3 43 85-127 30-73 (407)
413 PLN02662 cinnamyl-alcohol dehy 94.4 0.18 3.9E-06 44.0 7.6 33 85-118 4-37 (322)
414 TIGR03451 mycoS_dep_FDH mycoth 94.4 0.52 1.1E-05 42.1 10.7 33 85-117 177-209 (358)
415 PRK13403 ketol-acid reductoiso 94.4 0.063 1.4E-06 48.1 4.6 38 79-117 10-47 (335)
416 PRK06997 enoyl-(acyl carrier p 94.3 0.22 4.8E-06 42.5 7.9 87 82-197 3-92 (260)
417 PRK05993 short chain dehydroge 94.3 0.23 4.9E-06 42.7 8.0 33 85-118 4-37 (277)
418 TIGR01692 HIBADH 3-hydroxyisob 94.3 0.12 2.7E-06 45.1 6.4 115 90-225 1-119 (288)
419 COG0665 DadA Glycine/D-amino a 94.3 0.067 1.5E-06 47.9 4.8 44 84-128 3-46 (387)
420 TIGR02853 spore_dpaA dipicolin 94.3 0.06 1.3E-06 47.3 4.3 36 82-118 148-183 (287)
421 PRK06179 short chain dehydroge 94.3 0.2 4.4E-06 42.5 7.5 33 85-118 4-37 (270)
422 cd08239 THR_DH_like L-threonin 94.2 0.46 1E-05 41.8 10.0 34 85-118 164-197 (339)
423 PRK06077 fabG 3-ketoacyl-(acyl 94.2 0.4 8.6E-06 40.1 9.1 89 83-198 4-93 (252)
424 PRK05884 short chain dehydroge 94.2 0.2 4.3E-06 41.8 7.2 31 87-118 2-33 (223)
425 PRK06392 homoserine dehydrogen 94.2 0.36 7.8E-06 43.3 9.2 20 87-106 2-21 (326)
426 PRK08261 fabG 3-ketoacyl-(acyl 94.2 0.17 3.7E-06 46.8 7.4 86 82-198 207-293 (450)
427 PRK12742 oxidoreductase; Provi 94.2 0.12 2.5E-06 43.0 5.8 32 83-115 4-36 (237)
428 PRK14982 acyl-ACP reductase; P 94.2 0.061 1.3E-06 48.5 4.2 38 82-119 152-191 (340)
429 PLN02989 cinnamyl-alcohol dehy 94.2 0.36 7.9E-06 42.3 9.1 33 85-118 5-38 (325)
430 TIGR01829 AcAcCoA_reduct aceto 94.2 0.44 9.6E-06 39.4 9.3 86 86-198 1-87 (242)
431 COG4221 Short-chain alcohol de 94.2 0.28 6E-06 42.1 7.9 85 83-197 4-89 (246)
432 PRK09330 cell division protein 94.2 0.33 7.2E-06 44.5 9.0 36 84-119 12-49 (384)
433 PRK06928 pyrroline-5-carboxyla 94.2 0.27 5.8E-06 42.8 8.1 33 86-118 2-37 (277)
434 cd05312 NAD_bind_1_malic_enz N 94.1 0.059 1.3E-06 47.2 3.9 77 81-159 21-113 (279)
435 TIGR03026 NDP-sugDHase nucleot 94.1 0.2 4.3E-06 46.1 7.6 40 87-127 2-41 (411)
436 COG1712 Predicted dinucleotide 94.1 0.26 5.6E-06 41.9 7.5 37 87-123 2-40 (255)
437 TIGR02437 FadB fatty oxidation 94.1 0.1 2.2E-06 51.6 5.9 34 86-120 314-347 (714)
438 PLN02366 spermidine synthase 94.1 0.67 1.4E-05 41.2 10.6 34 85-120 92-126 (308)
439 PRK06484 short chain dehydroge 94.0 0.32 7E-06 45.6 9.1 84 83-197 267-351 (520)
440 PRK06035 3-hydroxyacyl-CoA deh 94.0 0.076 1.7E-06 46.4 4.5 33 86-119 4-36 (291)
441 PTZ00345 glycerol-3-phosphate 94.0 0.19 4E-06 45.8 7.0 35 85-119 11-51 (365)
442 PLN00198 anthocyanidin reducta 94.0 0.84 1.8E-05 40.3 11.1 35 83-118 7-42 (338)
443 PLN00016 RNA-binding protein; 93.9 0.4 8.7E-06 43.3 9.1 116 80-227 47-170 (378)
444 PRK08057 cobalt-precorrin-6x r 93.9 0.34 7.3E-06 41.8 8.2 95 85-220 2-98 (248)
445 COG2084 MmsB 3-hydroxyisobutyr 93.9 0.74 1.6E-05 40.5 10.4 124 86-226 1-125 (286)
446 cd05298 GH4_GlvA_pagL_like Gly 93.9 0.21 4.5E-06 46.6 7.3 103 87-227 2-112 (437)
447 PLN02740 Alcohol dehydrogenase 93.9 0.58 1.3E-05 42.3 10.0 34 85-118 199-232 (381)
448 TIGR00036 dapB dihydrodipicoli 93.8 0.46 9.9E-06 41.2 8.9 31 86-116 2-34 (266)
449 PRK11150 rfaD ADP-L-glycero-D- 93.8 0.37 8E-06 41.9 8.5 31 88-118 2-33 (308)
450 PRK12771 putative glutamate sy 93.8 0.26 5.6E-06 47.2 8.1 35 84-119 136-170 (564)
451 PRK06483 dihydromonapterin red 93.8 0.49 1.1E-05 39.3 8.9 33 85-118 2-35 (236)
452 TIGR00065 ftsZ cell division p 93.8 0.33 7.2E-06 43.9 8.3 41 80-120 12-54 (349)
453 TIGR02197 heptose_epim ADP-L-g 93.8 0.57 1.2E-05 40.5 9.6 30 88-117 1-31 (314)
454 PRK15076 alpha-galactosidase; 93.8 0.21 4.6E-06 46.4 7.2 95 86-216 2-105 (431)
455 PLN02520 bifunctional 3-dehydr 93.8 0.074 1.6E-06 50.7 4.2 35 83-118 377-411 (529)
456 PRK06482 short chain dehydroge 93.8 0.38 8.2E-06 41.1 8.3 81 86-197 3-84 (276)
457 PF01370 Epimerase: NAD depend 93.7 0.35 7.6E-06 39.8 7.8 102 88-227 1-121 (236)
458 PRK08263 short chain dehydroge 93.7 0.44 9.6E-06 40.7 8.7 33 85-118 3-36 (275)
459 cd05197 GH4_glycoside_hydrolas 93.7 0.33 7.2E-06 45.1 8.3 104 87-228 2-113 (425)
460 TIGR01772 MDH_euk_gproteo mala 93.7 0.094 2E-06 46.7 4.4 33 87-119 1-35 (312)
461 PRK04308 murD UDP-N-acetylmura 93.7 0.39 8.5E-06 44.5 8.7 36 83-119 3-38 (445)
462 PLN00106 malate dehydrogenase 93.7 0.1 2.3E-06 46.7 4.7 35 85-119 18-54 (323)
463 TIGR01830 3oxo_ACP_reduc 3-oxo 93.6 0.61 1.3E-05 38.4 9.2 84 88-198 1-85 (239)
464 PRK06249 2-dehydropantoate 2-r 93.6 0.092 2E-06 46.4 4.3 33 86-119 6-38 (313)
465 TIGR01763 MalateDH_bact malate 93.6 0.095 2.1E-06 46.4 4.4 32 86-117 2-33 (305)
466 PRK09291 short chain dehydroge 93.6 0.6 1.3E-05 39.1 9.2 80 85-198 2-82 (257)
467 PRK06199 ornithine cyclodeamin 93.6 0.31 6.6E-06 44.6 7.8 76 85-199 155-233 (379)
468 PRK03803 murD UDP-N-acetylmura 93.6 0.32 6.9E-06 45.1 8.0 33 85-118 6-38 (448)
469 PRK12747 short chain dehydroge 93.6 0.56 1.2E-05 39.4 9.0 93 84-197 3-96 (252)
470 PRK06180 short chain dehydroge 93.6 0.41 9E-06 41.0 8.2 83 85-198 4-87 (277)
471 PF01266 DAO: FAD dependent ox 93.6 0.12 2.5E-06 45.2 4.9 35 87-122 1-35 (358)
472 TIGR03376 glycerol3P_DH glycer 93.5 0.32 6.8E-06 43.9 7.6 31 87-117 1-38 (342)
473 PRK12480 D-lactate dehydrogena 93.5 0.1 2.2E-06 46.8 4.5 37 81-118 142-178 (330)
474 TIGR02441 fa_ox_alpha_mit fatt 93.5 0.11 2.3E-06 51.6 4.9 33 86-119 336-368 (737)
475 PRK13243 glyoxylate reductase; 93.5 0.097 2.1E-06 47.0 4.2 36 82-118 147-182 (333)
476 PRK05693 short chain dehydroge 93.4 0.41 9E-06 40.8 8.0 32 86-118 2-34 (274)
477 PLN02852 ferredoxin-NADP+ redu 93.4 0.44 9.5E-06 45.1 8.7 41 85-127 26-68 (491)
478 PRK12409 D-amino acid dehydrog 93.4 0.11 2.3E-06 47.4 4.5 33 86-119 2-34 (410)
479 PLN02260 probable rhamnose bio 93.4 0.66 1.4E-05 45.3 10.3 34 84-117 5-40 (668)
480 PF02558 ApbA: Ketopantoate re 93.4 0.14 3E-06 39.9 4.6 31 88-119 1-31 (151)
481 cd01337 MDH_glyoxysomal_mitoch 93.4 0.1 2.2E-06 46.4 4.2 32 87-118 2-35 (310)
482 PRK08306 dipicolinate synthase 93.4 0.11 2.5E-06 45.7 4.5 35 83-118 150-184 (296)
483 PRK12367 short chain dehydroge 93.4 0.16 3.5E-06 43.2 5.3 41 78-119 7-48 (245)
484 PRK13301 putative L-aspartate 93.3 0.2 4.4E-06 43.5 5.8 114 85-221 2-122 (267)
485 PF12847 Methyltransf_18: Meth 93.3 0.78 1.7E-05 33.3 8.3 77 85-197 2-78 (112)
486 smart00822 PKS_KR This enzymat 93.3 0.74 1.6E-05 35.5 8.7 31 87-117 2-33 (180)
487 PRK08818 prephenate dehydrogen 93.3 0.43 9.3E-06 43.5 8.2 35 83-117 2-37 (370)
488 PRK06523 short chain dehydroge 93.3 0.26 5.6E-06 41.6 6.4 37 82-119 6-43 (260)
489 PLN02712 arogenate dehydrogena 93.3 0.83 1.8E-05 44.9 10.6 36 82-118 366-401 (667)
490 PRK08177 short chain dehydroge 93.3 0.56 1.2E-05 38.8 8.3 33 86-119 2-35 (225)
491 PF05368 NmrA: NmrA-like famil 93.3 2 4.4E-05 35.7 11.8 93 88-219 1-99 (233)
492 PF01494 FAD_binding_3: FAD bi 93.3 0.11 2.3E-06 45.4 4.2 34 86-120 2-35 (356)
493 TIGR02818 adh_III_F_hyde S-(hy 93.3 0.91 2E-05 40.8 10.3 33 85-117 186-218 (368)
494 COG1064 AdhP Zn-dependent alco 93.3 0.51 1.1E-05 42.5 8.4 31 85-116 167-197 (339)
495 cd08281 liver_ADH_like1 Zinc-d 93.2 0.68 1.5E-05 41.6 9.4 33 85-117 192-224 (371)
496 PRK11259 solA N-methyltryptoph 93.2 0.12 2.5E-06 46.3 4.4 35 85-120 3-37 (376)
497 PRK00676 hemA glutamyl-tRNA re 93.2 0.12 2.5E-06 46.6 4.3 38 82-119 171-208 (338)
498 PRK05479 ketol-acid reductoiso 93.2 0.13 2.8E-06 46.2 4.5 37 80-117 12-48 (330)
499 PRK08040 putative semialdehyde 93.2 0.95 2.1E-05 40.8 10.0 92 84-221 3-97 (336)
500 COG1250 FadB 3-hydroxyacyl-CoA 93.1 0.24 5.2E-06 44.0 6.1 32 86-118 4-35 (307)
No 1
>KOG2336 consensus Molybdopterin biosynthesis-related protein [Coenzyme transport and metabolism]
Probab=100.00 E-value=6.1e-46 Score=314.70 Aligned_cols=220 Identities=68% Similarity=1.045 Sum_probs=196.5
Q ss_pred CHHHHHHHHHHHHHhhhcCCCCchhHhHHHHHHHHHHhhhhhhhhhhhhcccccCCcccccCCchhHHHhhhhcChhHHH
Q 026893 1 MEAELKDMIDDLESLKRSLPDSSLHASIDKLELRVENLTKMAMSATARRSKVKDMSSEVVDSNPYSRLMALQRMGIVENY 80 (231)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~p~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~Rq~~l~~~g~~~~~ 80 (231)
|+.-.+++.++|+.|.+.+.+.-. ..++.+.........++.|..|.|+.++|.|++|++||||.|+|.||||+..+
T Consensus 1 ~~~~~~~l~~~ld~l~~~l~d~~~---~~~~e~~~~~~~t~~~~~p~~R~kieklSsEVVDSNPYSRLMALqRMgIV~dY 77 (422)
T KOG2336|consen 1 MEVGFKALLDDLDVLQKRLSDLKL---ELKLESSSENLATLSKCNPHRRSKIEKLSSEVVDSNPYSRLMALQRMGIVDDY 77 (422)
T ss_pred CchhHHHHHHHHHHHHHHhhhhhh---hccccccccCcccCCCCCchhhHHHHHhhhhHhcCChHHHHHHHHHhcchhhH
Confidence 677788899999988888665321 22333333333333445578899999999999999999999999999999999
Q ss_pred HHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 81 ERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 81 ~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
+||+.+.|+|||.||+||.+|++|.|||+|++.|+|+|.|+..|+||.||.|++.|.+|++++...|..+||+|.++.|+
T Consensus 78 ErIR~~aVAiVGvGGVGSV~AeMLTRCGIGkLlLfDYDkVElANMNRLFf~P~QaGlsKv~AA~~TL~~iNPDV~iE~hn 157 (422)
T KOG2336|consen 78 ERIREFAVAIVGVGGVGSVTAEMLTRCGIGKLLLFDYDKVELANMNRLFFQPDQAGLSKVDAAVQTLAEINPDVVIEVHN 157 (422)
T ss_pred HHHhhheeEEEecCchhHHHHHHHHhcCcceEEEeecchhhhhcccccccCcccccchHHHHHHHHHHhcCCCeEEEEee
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCce
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSSS 226 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~~ 226 (231)
++|++.++++.|.+.|+.+++- ..++.|+|+.|+||+++|+.||.+|.+.+..|+++|++++.
T Consensus 158 ~NITTvenFd~F~~~is~g~~~---~gkpvDLVLSCVDNfEARMavN~ACNE~~q~WmESGVSEnA 220 (422)
T KOG2336|consen 158 YNITTVENFDTFTDRISNGSLC---PGKPVDLVLSCVDNFEARMAVNQACNELNQTWMESGVSENA 220 (422)
T ss_pred cceeeehhHHHHHHHhhcCCCC---CCCcceEEeeehhhHHHHHHHHHHHHHhhhHHHHccCcccc
Confidence 9999999999999999998842 45679999999999999999999999999999999998764
No 2
>PRK06153 hypothetical protein; Provisional
Probab=100.00 E-value=4.3e-42 Score=306.74 Aligned_cols=190 Identities=17% Similarity=0.229 Sum_probs=172.3
Q ss_pred hhcCC-CCchhHhHHHHHHHHHHhhhhhhhh-hhhhcccccCCcccccCCchhHHH-hhhhcChhHHHHHHhcCcEEEEe
Q 026893 16 KRSLP-DSSLHASIDKLELRVENLTKMAMSA-TARRSKVKDMSSEVVDSNPYSRLM-ALQRMGIVENYERIREFSVAIVG 92 (231)
Q Consensus 16 ~~~~p-~~~~~~~~~k~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~y~Rq~-~l~~~g~~~~~~kl~~~~V~IvG 92 (231)
-++|| ..+|.|||+||++|+.+|++||+++ +.+.+++++...+..++++|.++. .+.|.|+.+.|++|++++|+|||
T Consensus 104 fS~kp~~~~y~~y~~k~~~Y~~ii~~~A~~~~~~~~~~~~~~~~~~~~~svf~y~dt~s~R~~i~~~q~kL~~~~VaIVG 183 (393)
T PRK06153 104 FSNKPGGGGYADYYHKMTTYATIISGPARVLDPTASARTFRVIEDAEEDSVFNYPDTASSRAGIGALSAKLEGQRIAIIG 183 (393)
T ss_pred eecCCCCCCcccHHHHHHHHHHHhcchhhhcCCCCCCcccCCCCCcccCCceehhhhhccccChHHHHHHHhhCcEEEEc
Confidence 46889 6789999999999999999999998 999999999765666789999999 77788888999999999999999
Q ss_pred cCchHHHHHHHHHHhcCceEEEEeCCccccccccccC--CCcCccCC--cHHHHHHHHHHhhCCCcEEEEEeecccCccc
Q 026893 93 VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF--FRPEQVGM--TKTDAAVQTLADINPDVVLESFTLNITTVQG 168 (231)
Q Consensus 93 ~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~--~~~~dvG~--~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~ 168 (231)
|||+||+++..|||+||++|+|+|+|.|+++|++||+ |..+|+|+ +||+++++++.+++|.+ .++...++. ++
T Consensus 184 ~GG~GS~Va~~LAR~GVgeI~LVD~D~Ve~SNLnRQ~gaf~~~DvGk~~~KVevaa~rl~~in~~I--~~~~~~I~~-~n 260 (393)
T PRK06153 184 LGGTGSYILDLVAKTPVREIHLFDGDDFLQHNAFRSPGAASIEELREAPKKVDYFKSRYSNMRRGI--VPHPEYIDE-DN 260 (393)
T ss_pred CCccHHHHHHHHHHcCCCEEEEECCCEecccccccccccCCHhHcCCcchHHHHHHHHHHHhCCeE--EEEeecCCH-HH
Confidence 9999999999999999999999999999999999996 58899999 99999999999999865 577777753 44
Q ss_pred hHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCcc
Q 026893 169 FETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQ 223 (231)
Q Consensus 169 ~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~ 223 (231)
.+ .+.++|+||+|+|+.++|..|+++|.++++|||++|+.
T Consensus 261 ~~---------------~L~~~DiV~dcvDn~~aR~~ln~~a~~~gIP~Id~G~~ 300 (393)
T PRK06153 261 VD---------------ELDGFTFVFVCVDKGSSRKLIVDYLEALGIPFIDVGMG 300 (393)
T ss_pred HH---------------HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEeeec
Confidence 43 24689999999999999999999999999999999975
No 3
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=100.00 E-value=3.7e-38 Score=261.93 Aligned_cols=150 Identities=25% Similarity=0.387 Sum_probs=139.4
Q ss_pred CchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcHHH
Q 026893 63 NPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTKTD 141 (231)
Q Consensus 63 ~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~Ka~ 141 (231)
.+|+||+++|+ .++|++|++++|+|+|+||+||+++++|+++||++|+|+|+|.++.+|++|||+ +++|+|++|++
T Consensus 2 ~~Y~Rqi~l~G---~e~Q~~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d~ve~snL~rqfl~~~~diG~~Ka~ 78 (197)
T cd01492 2 ALYDRQIRLWG---LEAQKRLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDRTVTEEDLGAQFLIPAEDLGQNRAE 78 (197)
T ss_pred chhhHHHHHhC---HHHHHHHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECCcccHhhCCCCccccHHHcCchHHH
Confidence 58999999988 799999999999999999999999999999999999999999999999999985 88999999999
Q ss_pred HHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeC
Q 026893 142 AAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESG 221 (231)
Q Consensus 142 ~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g 221 (231)
+++++|+++||+++++++...+++ ..+. +++++|+||+|.|+.+.+..++++|+++++||+.++
T Consensus 79 a~~~~L~~lNp~v~i~~~~~~~~~--~~~~--------------~~~~~dvVi~~~~~~~~~~~ln~~c~~~~ip~i~~~ 142 (197)
T cd01492 79 ASLERLRALNPRVKVSVDTDDISE--KPEE--------------FFSQFDVVVATELSRAELVKINELCRKLGVKFYATG 142 (197)
T ss_pred HHHHHHHHHCCCCEEEEEecCccc--cHHH--------------HHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEE
Confidence 999999999999999999887762 2232 246899999999999999999999999999999999
Q ss_pred ccCceeEEeC
Q 026893 222 KQSSSCIVFL 231 (231)
Q Consensus 222 ~~g~~g~vf~ 231 (231)
+.|++|++|.
T Consensus 143 ~~G~~G~v~~ 152 (197)
T cd01492 143 VHGLFGFVFA 152 (197)
T ss_pred ecCCEEEEEE
Confidence 9999999983
No 4
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=100.00 E-value=5.8e-38 Score=260.97 Aligned_cols=151 Identities=24% Similarity=0.381 Sum_probs=138.3
Q ss_pred chhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-Cc--CccCCcHH
Q 026893 64 PYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RP--EQVGMTKT 140 (231)
Q Consensus 64 ~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~--~dvG~~Ka 140 (231)
+||||+++|+ .++|++|++++|+|+||||+||+++++|+++||++|+|+|+|.++.+|++|||| .+ +++|++|+
T Consensus 1 ~y~Rqi~l~G---~~~q~~L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d~ve~snl~rq~~~~~~~~~iG~~Ka 77 (198)
T cd01485 1 LYDRQIRLWG---DEAQNKLRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHRLVSTEDLGSNFFLDAEVSNSGMNRA 77 (198)
T ss_pred CccceeeccC---HHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECCcCChhcCcccEecccchhhcCchHH
Confidence 6999999988 799999999999999999999999999999999999999999999999999975 66 79999999
Q ss_pred HHHHHHHHhhCCCcEEEEEeecccC-ccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 026893 141 DAAVQTLADINPDVVLESFTLNITT-VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWME 219 (231)
Q Consensus 141 ~~~~~~l~~~np~v~v~~~~~~i~~-~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~ 219 (231)
++++++|+++||+++++++...+++ .++.+. +++++|+||+|.|+.+.+..++++|+++++||+.
T Consensus 78 ~~~~~~L~~lNp~v~i~~~~~~~~~~~~~~~~--------------~~~~~dvVi~~~d~~~~~~~ln~~c~~~~ip~i~ 143 (198)
T cd01485 78 AASYEFLQELNPNVKLSIVEEDSLSNDSNIEE--------------YLQKFTLVIATEENYERTAKVNDVCRKHHIPFIS 143 (198)
T ss_pred HHHHHHHHHHCCCCEEEEEecccccchhhHHH--------------HHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 9999999999999999999877652 122232 3468999999999999999999999999999999
Q ss_pred eCccCceeEEeC
Q 026893 220 SGKQSSSCIVFL 231 (231)
Q Consensus 220 ~g~~g~~g~vf~ 231 (231)
+++.|++|++|+
T Consensus 144 ~~~~G~~G~v~~ 155 (198)
T cd01485 144 CATYGLIGYAFF 155 (198)
T ss_pred EEeecCEEEEEE
Confidence 999999999984
No 5
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=100.00 E-value=4.8e-38 Score=268.52 Aligned_cols=152 Identities=26% Similarity=0.490 Sum_probs=141.4
Q ss_pred CCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcHH
Q 026893 62 SNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTKT 140 (231)
Q Consensus 62 ~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~Ka 140 (231)
..||+||+.+|++|. ++|++|++++|+|+|+||+||+++++|+++||++|+|+|+|.|+++|++||++ .++|+|++|+
T Consensus 2 ~~ry~Rq~~l~~~g~-~~q~~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~RQ~l~~~~diG~~Ka 80 (240)
T TIGR02355 2 MLRYNRQIILRGFDF-DGQEALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFDTVSLSNLQRQVLHSDANIGQPKV 80 (240)
T ss_pred ccceeeeeecccCCH-HHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCcccccCcccceeeeHhhCCCcHH
Confidence 369999999999996 99999999999999999999999999999999999999999999999999986 6789999999
Q ss_pred HHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEe
Q 026893 141 DAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMES 220 (231)
Q Consensus 141 ~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~ 220 (231)
++++++|+++||+++++++...+++ ++... .+.++|+||+|+|++++|..++++|+++++||+.+
T Consensus 81 ~~a~~~l~~inp~v~i~~~~~~i~~-~~~~~--------------~~~~~DlVvd~~D~~~~r~~ln~~~~~~~ip~v~~ 145 (240)
T TIGR02355 81 ESAKDALTQINPHIAINPINAKLDD-AELAA--------------LIAEHDIVVDCTDNVEVRNQLNRQCFAAKVPLVSG 145 (240)
T ss_pred HHHHHHHHHHCCCcEEEEEeccCCH-HHHHH--------------HhhcCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999988875 34443 34689999999999999999999999999999999
Q ss_pred CccCceeEE
Q 026893 221 GKQSSSCIV 229 (231)
Q Consensus 221 g~~g~~g~v 229 (231)
++.|..|++
T Consensus 146 ~~~g~~G~v 154 (240)
T TIGR02355 146 AAIRMEGQV 154 (240)
T ss_pred EecccEeEE
Confidence 999999985
No 6
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=100.00 E-value=4.8e-38 Score=269.41 Aligned_cols=158 Identities=29% Similarity=0.519 Sum_probs=143.5
Q ss_pred CCcccccCCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcC
Q 026893 55 MSSEVVDSNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPE 133 (231)
Q Consensus 55 ~~~~~~~~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~ 133 (231)
++.++ ..||+||+.++++|. ++|++|++++|+|+|+||+||+++++|+++||++|+|+|+|.|+++|++||++ .++
T Consensus 5 l~~~~--~~rY~Rqi~l~~~g~-~~Q~~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~ 81 (245)
T PRK05690 5 LSDEE--MLRYNRQIILRGFDF-DGQEKLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFDTVSLSNLQRQVLHDDA 81 (245)
T ss_pred CCHHH--HHHHHHhccchhcCH-HHHHHhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEECcchhhhhhcCChh
Confidence 45443 379999999877775 99999999999999999999999999999999999999999999999999985 789
Q ss_pred ccCCcHHHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHc
Q 026893 134 QVGMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNEL 213 (231)
Q Consensus 134 dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~ 213 (231)
|+|++|+++++++|+++||+++++++...+++ ++... .++++|+||+|+|++++|..++++|+++
T Consensus 82 dvG~~Ka~~a~~~l~~lnp~v~i~~~~~~i~~-~~~~~--------------~~~~~DiVi~~~D~~~~r~~ln~~~~~~ 146 (245)
T PRK05690 82 TIGQPKVESARAALARINPHIAIETINARLDD-DELAA--------------LIAGHDLVLDCTDNVATRNQLNRACFAA 146 (245)
T ss_pred hCCChHHHHHHHHHHHHCCCCEEEEEeccCCH-HHHHH--------------HHhcCCEEEecCCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999988874 33333 3468999999999999999999999999
Q ss_pred CCcEEEeCccCceeEEe
Q 026893 214 NQTWMESGKQSSSCIVF 230 (231)
Q Consensus 214 ~~p~i~~g~~g~~g~vf 230 (231)
++||+.+++.|+.|++.
T Consensus 147 ~ip~v~~~~~g~~G~v~ 163 (245)
T PRK05690 147 KKPLVSGAAIRMEGQVT 163 (245)
T ss_pred CCEEEEeeeccCCceEE
Confidence 99999999999999874
No 7
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=100.00 E-value=8e-38 Score=260.93 Aligned_cols=152 Identities=32% Similarity=0.565 Sum_probs=140.2
Q ss_pred chhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccC-CCcCccCCcHHHH
Q 026893 64 PYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDA 142 (231)
Q Consensus 64 ~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~-~~~~dvG~~Ka~~ 142 (231)
|||||+++.++|. +.|+||++++|+|+||||+||+++++|+++|+++|+|+|+|.|+++|++||| |+++|+|++|+++
T Consensus 1 rY~Rqi~l~~~g~-~~q~kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d~ve~sNL~Rq~l~~~~diG~~Ka~~ 79 (202)
T TIGR02356 1 RYARQLLLPDIGE-EGQQRLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDDHVDLSNLQRQILFTEEDVGRPKVEV 79 (202)
T ss_pred CCcceecchhcCH-HHHHHhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCCEEcccchhhhhccChhhCCChHHHH
Confidence 7999999966664 9999999999999999999999999999999999999999999999999997 5899999999999
Q ss_pred HHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCc
Q 026893 143 AVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGK 222 (231)
Q Consensus 143 ~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~ 222 (231)
++++++++||+++++.++..++. +++.. .+.++|+||+|+|+.++|..++++|+++++|||++++
T Consensus 80 ~~~~l~~~np~v~i~~~~~~i~~-~~~~~--------------~~~~~D~Vi~~~d~~~~r~~l~~~~~~~~ip~i~~~~ 144 (202)
T TIGR02356 80 AAQRLRELNSDIQVTALKERVTA-ENLEL--------------LINNVDLVLDCTDNFATRYLINDACVALGTPLISAAV 144 (202)
T ss_pred HHHHHHHhCCCCEEEEehhcCCH-HHHHH--------------HHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999888764 33333 3468999999999999999999999999999999999
Q ss_pred cCceeEEeC
Q 026893 223 QSSSCIVFL 231 (231)
Q Consensus 223 ~g~~g~vf~ 231 (231)
.|+.|++++
T Consensus 145 ~g~~G~~~~ 153 (202)
T TIGR02356 145 VGFGGQLMV 153 (202)
T ss_pred ccCeEEEEE
Confidence 999998863
No 8
>PRK08223 hypothetical protein; Validated
Probab=100.00 E-value=2.2e-37 Score=268.55 Aligned_cols=152 Identities=27% Similarity=0.450 Sum_probs=140.5
Q ss_pred cCCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcH
Q 026893 61 DSNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTK 139 (231)
Q Consensus 61 ~~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~K 139 (231)
..++|+||+.+.+ .++|+||++++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|++||++ +.+|+|++|
T Consensus 6 ~~~~ysRq~~~iG---~e~Q~kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D~Ve~SNLnRQ~l~~~~diG~~K 82 (287)
T PRK08223 6 YDEAFCRNLGWIT---PTEQQRLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFDVFELRNFNRQAGAMMSTLGRPK 82 (287)
T ss_pred HHHHHhhhhhhcC---HHHHHHHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCCCcchhccccccCcChhHCCCcH
Confidence 3479999998855 599999999999999999999999999999999999999999999999999985 889999999
Q ss_pred HHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCH--HHHHHHHHHHHHcCCcE
Q 026893 140 TDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNY--EARMAVNQACNELNQTW 217 (231)
Q Consensus 140 a~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~--~~r~~i~~~~~~~~~p~ 217 (231)
+++++++++++||+++|++++..+++ ++.+.| ++++|+||||+|++ ++|..+++.|+++++||
T Consensus 83 ve~a~~~l~~iNP~v~V~~~~~~l~~-~n~~~l--------------l~~~DlVvD~~D~~~~~~r~~ln~~c~~~~iP~ 147 (287)
T PRK08223 83 AEVLAEMVRDINPELEIRAFPEGIGK-ENADAF--------------LDGVDVYVDGLDFFEFDARRLVFAACQQRGIPA 147 (287)
T ss_pred HHHHHHHHHHHCCCCEEEEEecccCc-cCHHHH--------------HhCCCEEEECCCCCcHHHHHHHHHHHHHcCCCE
Confidence 99999999999999999999998885 555543 46899999999986 89999999999999999
Q ss_pred EEeCccCceeEEe
Q 026893 218 MESGKQSSSCIVF 230 (231)
Q Consensus 218 i~~g~~g~~g~vf 230 (231)
|.+++.|+.|++.
T Consensus 148 V~~~~~g~~gqv~ 160 (287)
T PRK08223 148 LTAAPLGMGTALL 160 (287)
T ss_pred EEEeccCCeEEEE
Confidence 9999999999875
No 9
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=100.00 E-value=2.2e-37 Score=262.66 Aligned_cols=151 Identities=37% Similarity=0.605 Sum_probs=138.6
Q ss_pred chhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcHHHH
Q 026893 64 PYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTKTDA 142 (231)
Q Consensus 64 ~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~Ka~~ 142 (231)
||+||+++.++| .+.|++|++++|+|+||||+||+++++|+++||++|+|+|+|.|+++|++||++ .++|+|++|+++
T Consensus 1 rY~Rq~~l~~~g-~~~q~~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~Ka~~ 79 (228)
T cd00757 1 RYSRQILLPEIG-EEGQEKLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDDVVELSNLQRQILHTEADVGQPKAEA 79 (228)
T ss_pred CcceeechhhcC-HHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEEcCcccccccccChhhCCChHHHH
Confidence 799999995555 599999999999999999999999999999999999999999999999999986 777999999999
Q ss_pred HHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCc
Q 026893 143 AVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGK 222 (231)
Q Consensus 143 ~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~ 222 (231)
++++|+++||+++++.++..++. ++...+ +.++|+||+|+|+.++|..++++|+++++|||++|+
T Consensus 80 ~~~~l~~~np~~~i~~~~~~i~~-~~~~~~--------------~~~~DvVi~~~d~~~~r~~l~~~~~~~~ip~i~~g~ 144 (228)
T cd00757 80 AAERLRAINPDVEIEAYNERLDA-ENAEEL--------------IAGYDLVLDCTDNFATRYLINDACVKLGKPLVSGAV 144 (228)
T ss_pred HHHHHHHhCCCCEEEEecceeCH-HHHHHH--------------HhCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEEEEe
Confidence 99999999999999999888753 444433 468999999999999999999999999999999999
Q ss_pred cCceeEEe
Q 026893 223 QSSSCIVF 230 (231)
Q Consensus 223 ~g~~g~vf 230 (231)
.|..|++.
T Consensus 145 ~g~~g~v~ 152 (228)
T cd00757 145 LGFEGQVT 152 (228)
T ss_pred ccCEEEEE
Confidence 99999875
No 10
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=1.1e-36 Score=273.58 Aligned_cols=155 Identities=25% Similarity=0.386 Sum_probs=142.7
Q ss_pred cCCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcH
Q 026893 61 DSNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTK 139 (231)
Q Consensus 61 ~~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~K 139 (231)
+..||+||+++.++|. ++|++|++++|+|+||||+||+++++|+++||++|+|+|+|.|+.+|++|||+ +++|+|++|
T Consensus 5 ~~~rY~Rq~~l~~~g~-~~q~~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~diG~~K 83 (355)
T PRK05597 5 DIARYRRQIMLGEIGQ-QGQQSLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDDTVDLSNLHRQVIHSTAGVGQPK 83 (355)
T ss_pred HHhHhhheechhhcCH-HHHHHHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcccccccCcccChhHCCChH
Confidence 4579999999976774 99999999999999999999999999999999999999999999999999985 889999999
Q ss_pred HHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 026893 140 TDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWME 219 (231)
Q Consensus 140 a~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~ 219 (231)
+++++++|+++||+++++++...++. ++... .+.++|+||+|+|++.+|..++++|+++++|||.
T Consensus 84 a~~a~~~l~~~np~v~v~~~~~~i~~-~~~~~--------------~~~~~DvVvd~~d~~~~r~~~n~~c~~~~ip~v~ 148 (355)
T PRK05597 84 AESAREAMLALNPDVKVTVSVRRLTW-SNALD--------------ELRDADVILDGSDNFDTRHLASWAAARLGIPHVW 148 (355)
T ss_pred HHHHHHHHHHHCCCcEEEEEEeecCH-HHHHH--------------HHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999988875 33332 3468999999999999999999999999999999
Q ss_pred eCccCceeEEeC
Q 026893 220 SGKQSSSCIVFL 231 (231)
Q Consensus 220 ~g~~g~~g~vf~ 231 (231)
+++.|+.|++.+
T Consensus 149 ~~~~g~~g~v~~ 160 (355)
T PRK05597 149 ASILGFDAQLSV 160 (355)
T ss_pred EEEecCeEEEEE
Confidence 999999998763
No 11
>PRK08328 hypothetical protein; Provisional
Probab=100.00 E-value=2.6e-36 Score=256.64 Aligned_cols=150 Identities=30% Similarity=0.517 Sum_probs=139.3
Q ss_pred CchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCC-cHH
Q 026893 63 NPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGM-TKT 140 (231)
Q Consensus 63 ~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~-~Ka 140 (231)
.||+||+++|+ .++|++|++++|+|+||||+||+++++|+++||++|+|+|+|.++.+|++||++ .++|+|+ +|+
T Consensus 8 ~ry~Rq~~~~g---~~~q~~L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~~dvG~~~k~ 84 (231)
T PRK08328 8 ERYDRQIMIFG---VEGQEKLKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQTPELSNLNRQILHWEEDLGKNPKP 84 (231)
T ss_pred HHHhhHHHhcC---HHHHHHHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCccChhhhccccccChhhcCchHHH
Confidence 69999999977 699999999999999999999999999999999999999999999999999985 7899999 699
Q ss_pred HHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEe
Q 026893 141 DAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMES 220 (231)
Q Consensus 141 ~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~ 220 (231)
++++++++++||+++++++...+++ ++.+.+ ++++|+||+|+|+.++|..++++|+++++|+|.+
T Consensus 85 ~~a~~~l~~~np~v~v~~~~~~~~~-~~~~~~--------------l~~~D~Vid~~d~~~~r~~l~~~~~~~~ip~i~g 149 (231)
T PRK08328 85 LSAKWKLERFNSDIKIETFVGRLSE-ENIDEV--------------LKGVDVIVDCLDNFETRYLLDDYAHKKGIPLVHG 149 (231)
T ss_pred HHHHHHHHHhCCCCEEEEEeccCCH-HHHHHH--------------HhcCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999887764 444433 4689999999999999999999999999999999
Q ss_pred CccCceeEEe
Q 026893 221 GKQSSSCIVF 230 (231)
Q Consensus 221 g~~g~~g~vf 230 (231)
++.|++|++.
T Consensus 150 ~~~g~~G~v~ 159 (231)
T PRK08328 150 AVEGTYGQVT 159 (231)
T ss_pred eeccCEEEEE
Confidence 9999999985
No 12
>PRK07411 hypothetical protein; Validated
Probab=100.00 E-value=1.5e-36 Score=275.77 Aligned_cols=153 Identities=27% Similarity=0.415 Sum_probs=142.2
Q ss_pred CCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcHH
Q 026893 62 SNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTKT 140 (231)
Q Consensus 62 ~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~Ka 140 (231)
..||+||+.+.++|. ++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|++||++ +.+|+|++|+
T Consensus 16 ~~ry~Rq~~l~~~g~-~~q~~L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D~ve~sNL~RQ~l~~~~dvG~~Ka 94 (390)
T PRK07411 16 YERYSRHLILPEVGL-EGQKRLKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFDVVDSSNLQRQVIHGTSWVGKPKI 94 (390)
T ss_pred HHHhhceechhhcCH-HHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEecccccCcCcccChHHCCCcHH
Confidence 479999999977775 99999999999999999999999999999999999999999999999999985 8999999999
Q ss_pred HHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEe
Q 026893 141 DAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMES 220 (231)
Q Consensus 141 ~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~ 220 (231)
++++++|+++||+++|+++...++. ++... ++.++|+||+|+|++++|..|+++|++.++||+.+
T Consensus 95 ~~a~~~l~~~np~v~v~~~~~~~~~-~~~~~--------------~~~~~D~Vvd~~d~~~~r~~ln~~~~~~~~p~v~~ 159 (390)
T PRK07411 95 ESAKNRILEINPYCQVDLYETRLSS-ENALD--------------ILAPYDVVVDGTDNFPTRYLVNDACVLLNKPNVYG 159 (390)
T ss_pred HHHHHHHHHHCCCCeEEEEecccCH-HhHHH--------------HHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999988885 33333 34689999999999999999999999999999999
Q ss_pred CccCceeEEe
Q 026893 221 GKQSSSCIVF 230 (231)
Q Consensus 221 g~~g~~g~vf 230 (231)
++.|+.|++.
T Consensus 160 ~~~g~~g~~~ 169 (390)
T PRK07411 160 SIFRFEGQAT 169 (390)
T ss_pred EEccCEEEEE
Confidence 9999999875
No 13
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=100.00 E-value=3e-36 Score=274.08 Aligned_cols=159 Identities=24% Similarity=0.398 Sum_probs=145.1
Q ss_pred cCCcccccCCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-Cc
Q 026893 54 DMSSEVVDSNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RP 132 (231)
Q Consensus 54 ~~~~~~~~~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~ 132 (231)
.++.++. .||+||+.+.++|. ++|+||++++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|++|||+ ++
T Consensus 14 ~l~~~~~--~ry~Rq~~l~~~g~-~~q~~L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D~ve~sNL~Rq~l~~~ 90 (392)
T PRK07878 14 ELTRDEV--ARYSRHLIIPDVGV-DGQKRLKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFDVVDESNLQRQVIHGQ 90 (392)
T ss_pred CCCHHHH--HHhhheechhhcCH-HHHHHHhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecCcccccccccCh
Confidence 3565543 79999999977775 99999999999999999999999999999999999999999999999999985 89
Q ss_pred CccCCcHHHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHH
Q 026893 133 EQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNE 212 (231)
Q Consensus 133 ~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~ 212 (231)
+|+|++|+++++++|.++||+++++++...++. ++... .++++|+||+|+|++.+|..+|++|++
T Consensus 91 ~diG~~Ka~~a~~~l~~~np~v~i~~~~~~i~~-~~~~~--------------~~~~~D~Vvd~~d~~~~r~~ln~~~~~ 155 (392)
T PRK07878 91 SDVGRSKAQSARDSIVEINPLVNVRLHEFRLDP-SNAVE--------------LFSQYDLILDGTDNFATRYLVNDAAVL 155 (392)
T ss_pred hcCCChHHHHHHHHHHHhCCCcEEEEEeccCCh-hHHHH--------------HHhcCCEEEECCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999988875 33333 346899999999999999999999999
Q ss_pred cCCcEEEeCccCceeEEe
Q 026893 213 LNQTWMESGKQSSSCIVF 230 (231)
Q Consensus 213 ~~~p~i~~g~~g~~g~vf 230 (231)
+++||+.+++.|+.|+++
T Consensus 156 ~~~p~v~~~~~g~~G~v~ 173 (392)
T PRK07878 156 AGKPYVWGSIYRFEGQAS 173 (392)
T ss_pred cCCCEEEEEeccCEEEEE
Confidence 999999999999999986
No 14
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=100.00 E-value=1.8e-36 Score=263.83 Aligned_cols=146 Identities=23% Similarity=0.379 Sum_probs=136.8
Q ss_pred chhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcHHHH
Q 026893 64 PYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTKTDA 142 (231)
Q Consensus 64 ~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~Ka~~ 142 (231)
.||||+++|| .++|+||++++|+|+|+||+|+++|++|+++||++|+|+|+|.++.+|++|||| +++|+|++|+++
T Consensus 1 lYsRQl~~~G---~eaq~kL~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d~ve~snL~rqf~~~~~dIGk~Kaea 77 (286)
T cd01491 1 LYSRQLYVLG---HEAMKKLQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTKPCSWSDLSSQFYLREEDIGKNRAEA 77 (286)
T ss_pred CcccceeccC---HHHHHHHhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCCccchhhcccCccCChHHhCHHHHHH
Confidence 4999999988 799999999999999999999999999999999999999999999999999986 899999999999
Q ss_pred HHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCc
Q 026893 143 AVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGK 222 (231)
Q Consensus 143 ~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~ 222 (231)
++++|+++||+++|+++...++. . .+.++|+||+|.|+.+.+..++++|+++++|||.+++
T Consensus 78 ~~~~L~eLNp~V~V~~~~~~~~~-----~--------------~l~~fdvVV~~~~~~~~~~~in~~c~~~~ipfI~a~~ 138 (286)
T cd01491 78 SQARLAELNPYVPVTVSTGPLTT-----D--------------ELLKFQVVVLTDASLEDQLKINEFCHSPGIKFISADT 138 (286)
T ss_pred HHHHHHHHCCCCEEEEEeccCCH-----H--------------HHhcCCEEEEecCCHHHHHHHHHHHHHcCCEEEEEec
Confidence 99999999999999999866432 1 2468999999999999999999999999999999999
Q ss_pred cCceeEEeC
Q 026893 223 QSSSCIVFL 231 (231)
Q Consensus 223 ~g~~g~vf~ 231 (231)
.|++|++|.
T Consensus 139 ~G~~G~vf~ 147 (286)
T cd01491 139 RGLFGSIFC 147 (286)
T ss_pred cccEEEEEe
Confidence 999999984
No 15
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=100.00 E-value=3.5e-36 Score=271.43 Aligned_cols=159 Identities=26% Similarity=0.438 Sum_probs=145.1
Q ss_pred cCCcccccCCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccC-CCc
Q 026893 54 DMSSEVVDSNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF-FRP 132 (231)
Q Consensus 54 ~~~~~~~~~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~-~~~ 132 (231)
.+++++ ..||+||+.+.++|. ++|++|++++|+|+||||+||+++++|+++||++|+|+|+|.|+++|++||+ |++
T Consensus 13 ~~~~~e--~~ry~Rqi~l~~~g~-~~q~~l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D~ve~sNL~RQ~l~~~ 89 (370)
T PRK05600 13 QLPTSE--LRRTARQLALPGFGI-EQQERLHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDDTVDVSNIHRQILFGA 89 (370)
T ss_pred CCCHHH--HHHhhcccchhhhCH-HHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCEEccccccccccCCh
Confidence 355443 379999999977775 9999999999999999999999999999999999999999999999999997 589
Q ss_pred CccCCcHHHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHH
Q 026893 133 EQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNE 212 (231)
Q Consensus 133 ~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~ 212 (231)
+|+|++|+++++++|+++||+++++++...++. ++...+ ++++|+||+|+|++++|..|+++|++
T Consensus 90 ~diG~~Ka~~~~~~l~~~np~v~i~~~~~~i~~-~~~~~~--------------~~~~DlVid~~Dn~~~r~~in~~~~~ 154 (370)
T PRK05600 90 SDVGRPKVEVAAERLKEIQPDIRVNALRERLTA-ENAVEL--------------LNGVDLVLDGSDSFATKFLVADAAEI 154 (370)
T ss_pred hHCCCHHHHHHHHHHHHHCCCCeeEEeeeecCH-HHHHHH--------------HhCCCEEEECCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999988874 444433 46899999999999999999999999
Q ss_pred cCCcEEEeCccCceeEEe
Q 026893 213 LNQTWMESGKQSSSCIVF 230 (231)
Q Consensus 213 ~~~p~i~~g~~g~~g~vf 230 (231)
+++|||.+++.|+.|++.
T Consensus 155 ~~iP~v~~~~~g~~G~v~ 172 (370)
T PRK05600 155 TGTPLVWGTVLRFHGELA 172 (370)
T ss_pred cCCCEEEEEEecCEEEEE
Confidence 999999999999999984
No 16
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=100.00 E-value=4.6e-35 Score=261.36 Aligned_cols=152 Identities=32% Similarity=0.524 Sum_probs=139.9
Q ss_pred CchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccC-CCcCccC--CcH
Q 026893 63 NPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVG--MTK 139 (231)
Q Consensus 63 ~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~-~~~~dvG--~~K 139 (231)
+||+||+.++.+|. ++|++|++++|+||||||+||+++++|+++||++|+|+|+|.|+.+|++||+ |+++|+| ++|
T Consensus 3 ~rY~Rq~~~~~~G~-~~Q~~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ve~sNL~RQ~l~~~~d~~~g~~K 81 (338)
T PRK12475 3 ERYSRQILFSGIGE-EGQRKIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDYVEWSNLQRQQLYTEEDAKQKKPK 81 (338)
T ss_pred chhhhhhchhhcCH-HHHHhhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCcccccccCccccccHHHccCCccH
Confidence 59999999988885 9999999999999999999999999999999999999999999999999997 5888875 899
Q ss_pred HHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 026893 140 TDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWME 219 (231)
Q Consensus 140 a~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~ 219 (231)
+++++++|+++||+++++++...++. ++++. .++++|+||+|+|++++|..|+++|+++++|||.
T Consensus 82 a~aa~~~l~~inp~v~i~~~~~~~~~-~~~~~--------------~~~~~DlVid~~D~~~~r~~in~~~~~~~ip~i~ 146 (338)
T PRK12475 82 AIAAKEHLRKINSEVEIVPVVTDVTV-EELEE--------------LVKEVDLIIDATDNFDTRLLINDLSQKYNIPWIY 146 (338)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCH-HHHHH--------------HhcCCCEEEEcCCCHHHHHHHHHHHHHcCCCEEE
Confidence 99999999999999999999887763 34443 3468999999999999999999999999999999
Q ss_pred eCccCceeEEe
Q 026893 220 SGKQSSSCIVF 230 (231)
Q Consensus 220 ~g~~g~~g~vf 230 (231)
+++.|..|+++
T Consensus 147 ~~~~g~~G~~~ 157 (338)
T PRK12475 147 GGCVGSYGVTY 157 (338)
T ss_pred EEecccEEEEE
Confidence 99999999875
No 17
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=100.00 E-value=1.8e-34 Score=257.71 Aligned_cols=152 Identities=33% Similarity=0.555 Sum_probs=139.7
Q ss_pred CchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccC--CcH
Q 026893 63 NPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVG--MTK 139 (231)
Q Consensus 63 ~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG--~~K 139 (231)
.||+||+.+..+|. ++|++|++++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|++||++ .++|+| ++|
T Consensus 3 ~rY~Rq~~l~~~G~-~~Q~~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D~Ve~sNL~RQ~l~~~~dig~g~~K 81 (339)
T PRK07688 3 ERYSRQELFSPIGE-EGQQKLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRDYVEWSNLQRQQLYTESDVKNNLPK 81 (339)
T ss_pred chhhhhhchhhcCH-HHHHHhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCccCHHHcCccccccHHHhcCCCcH
Confidence 69999999977775 99999999999999999999999999999999999999999999999999975 889995 599
Q ss_pred HHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 026893 140 TDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWME 219 (231)
Q Consensus 140 a~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~ 219 (231)
+++++++++++||+++++++...++. ++... .+.++|+||+|+|++++|..++++|+++++|||.
T Consensus 82 a~aa~~~l~~inp~v~v~~~~~~~~~-~~~~~--------------~~~~~DlVid~~Dn~~~r~~ln~~~~~~~iP~i~ 146 (339)
T PRK07688 82 AVAAKKRLEEINSDVRVEAIVQDVTA-EELEE--------------LVTGVDLIIDATDNFETRFIVNDAAQKYGIPWIY 146 (339)
T ss_pred HHHHHHHHHHHCCCcEEEEEeccCCH-HHHHH--------------HHcCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEE
Confidence 99999999999999999999888764 44443 3468999999999999999999999999999999
Q ss_pred eCccCceeEEe
Q 026893 220 SGKQSSSCIVF 230 (231)
Q Consensus 220 ~g~~g~~g~vf 230 (231)
+++.|.+|+++
T Consensus 147 ~~~~g~~G~~~ 157 (339)
T PRK07688 147 GACVGSYGLSY 157 (339)
T ss_pred EeeeeeeeEEE
Confidence 99999999875
No 18
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=100.00 E-value=6.2e-34 Score=245.78 Aligned_cols=152 Identities=25% Similarity=0.422 Sum_probs=134.9
Q ss_pred cCCcccccCCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-Cc
Q 026893 54 DMSSEVVDSNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RP 132 (231)
Q Consensus 54 ~~~~~~~~~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~ 132 (231)
+|++++ ..+|+|+.++|| .++|++|++++|+|+|+||+||+++++|+++||++|+|+|.|.++.+|+|||++ ..
T Consensus 4 ~~~~~~--~~rf~R~~~L~G---~e~~~kL~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D~V~~sNlnRQ~~~~~ 78 (268)
T PRK15116 4 VISDAW--RQRFGGTARLYG---EKALQLFADAHICVVGIGGVGSWAAEALARTGIGAITLIDMDDVCVTNTNRQIHALR 78 (268)
T ss_pred CCCHHH--HHHHhhHHHHhC---HHHHHHhcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCCEecccccccccccCh
Confidence 344433 379999999988 799999999999999999999999999999999999999999999999999985 78
Q ss_pred CccCCcHHHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHH
Q 026893 133 EQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNE 212 (231)
Q Consensus 133 ~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~ 212 (231)
+++|++|++++++++.++||+++|+.+...++. ++.+.+ +..++|+||+|+|+..++..++++|++
T Consensus 79 ~~vG~~Kve~~~~rl~~INP~~~V~~i~~~i~~-e~~~~l-------------l~~~~D~VIdaiD~~~~k~~L~~~c~~ 144 (268)
T PRK15116 79 DNVGLAKAEVMAERIRQINPECRVTVVDDFITP-DNVAEY-------------MSAGFSYVIDAIDSVRPKAALIAYCRR 144 (268)
T ss_pred hhcChHHHHHHHHHHHhHCCCcEEEEEecccCh-hhHHHH-------------hcCCCCEEEEcCCCHHHHHHHHHHHHH
Confidence 899999999999999999999999999877663 444433 224799999999999999999999999
Q ss_pred cCCcEEEeCccC
Q 026893 213 LNQTWMESGKQS 224 (231)
Q Consensus 213 ~~~p~i~~g~~g 224 (231)
+++|+|.+|-.|
T Consensus 145 ~~ip~I~~gGag 156 (268)
T PRK15116 145 NKIPLVTTGGAG 156 (268)
T ss_pred cCCCEEEECCcc
Confidence 999999886554
No 19
>PRK14851 hypothetical protein; Provisional
Probab=100.00 E-value=8.1e-34 Score=271.86 Aligned_cols=153 Identities=31% Similarity=0.464 Sum_probs=141.4
Q ss_pred cCCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccC-CCcCccCCcH
Q 026893 61 DSNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTK 139 (231)
Q Consensus 61 ~~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~-~~~~dvG~~K 139 (231)
...+|+||+.+|+ .+.|++|++++|+|+||||+||+++++|+++|||+|+|+|+|.|+++|+|||+ |+.+|+|++|
T Consensus 22 ~~~ry~R~~~l~g---~e~Q~kL~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D~ve~sNLNRQ~~~~~~dvG~~K 98 (679)
T PRK14851 22 REAAFSRNIGLFT---PGEQERLAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFDQFEPVNVNRQFGARVPSFGRPK 98 (679)
T ss_pred HHHHhhhhHHhcC---HHHHHHHhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCCEecccccccCcCcChhhCCCHH
Confidence 3479999999977 69999999999999999999999999999999999999999999999999998 5899999999
Q ss_pred HHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCC--HHHHHHHHHHHHHcCCcE
Q 026893 140 TDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDN--YEARMAVNQACNELNQTW 217 (231)
Q Consensus 140 a~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~--~~~r~~i~~~~~~~~~p~ 217 (231)
++++++++.++||+++|++++..++. ++++.| ++++|+||+|+|+ +++|..|++.|+++++|+
T Consensus 99 v~v~~~~l~~inP~~~I~~~~~~i~~-~n~~~~--------------l~~~DvVid~~D~~~~~~r~~l~~~c~~~~iP~ 163 (679)
T PRK14851 99 LAVMKEQALSINPFLEITPFPAGINA-DNMDAF--------------LDGVDVVLDGLDFFQFEIRRTLFNMAREKGIPV 163 (679)
T ss_pred HHHHHHHHHHhCCCCeEEEEecCCCh-HHHHHH--------------HhCCCEEEECCCCCcHHHHHHHHHHHHHCCCCE
Confidence 99999999999999999999999975 555554 4689999999997 578999999999999999
Q ss_pred EEeCccCceeEEeC
Q 026893 218 MESGKQSSSCIVFL 231 (231)
Q Consensus 218 i~~g~~g~~g~vf~ 231 (231)
|.+|+.|+.|++++
T Consensus 164 i~~g~~G~~g~~~~ 177 (679)
T PRK14851 164 ITAGPLGYSSAMLV 177 (679)
T ss_pred EEeecccccceEEE
Confidence 99999999998763
No 20
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=100.00 E-value=1.8e-33 Score=220.20 Aligned_cols=132 Identities=38% Similarity=0.627 Sum_probs=118.8
Q ss_pred hcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 84 REFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 84 ~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
|+++|+|+|+||+||+++++|+++|+++|+|+|+|.|+++|++||++ .++++|++|+++++++|+++||++++++++..
T Consensus 1 r~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~np~~~v~~~~~~ 80 (135)
T PF00899_consen 1 RNKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDDIVEPSNLNRQFLYTEEDVGKNKAEAAKERLQEINPDVEVEAIPEK 80 (135)
T ss_dssp HT-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESSBB-GGGCCTCTTS-GGGTTSBHHHHHHHHHHHHSTTSEEEEEESH
T ss_pred CCCEEEEECcCHHHHHHHHHHHHhCCCceeecCCcceeecccccccccccccchhHHHHHHHHHHHHhcCceeeeeeecc
Confidence 57899999999999999999999999999999999999999999975 78899999999999999999999999999988
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCceeEEe
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSSSCIVF 230 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~~g~vf 230 (231)
++. ++...+ ++++|+||+|+|+.+++..++++|+++++|||++++.|+.|+++
T Consensus 81 ~~~-~~~~~~--------------~~~~d~vi~~~d~~~~~~~l~~~~~~~~~p~i~~~~~g~~G~~~ 133 (135)
T PF00899_consen 81 IDE-ENIEEL--------------LKDYDIVIDCVDSLAARLLLNEICREYGIPFIDAGVNGFYGQVV 133 (135)
T ss_dssp CSH-HHHHHH--------------HHTSSEEEEESSSHHHHHHHHHHHHHTT-EEEEEEEETTEEEEE
T ss_pred ccc-cccccc--------------ccCCCEEEEecCCHHHHHHHHHHHHHcCCCEEEEEeecCEEEEE
Confidence 853 444443 35899999999999999999999999999999999999999985
No 21
>cd01493 APPBP1_RUB Ubiquitin activating enzyme (E1) subunit APPBP1. APPBP1 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. ABPP1 contains part of the adenylation domain.
Probab=100.00 E-value=1.3e-33 Score=258.06 Aligned_cols=152 Identities=16% Similarity=0.181 Sum_probs=138.8
Q ss_pred CchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcHHH
Q 026893 63 NPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTKTD 141 (231)
Q Consensus 63 ~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~Ka~ 141 (231)
.|||||+++|| .++|++|++++|+|+||||+|++++++|+++|||+|+|+|+|.|+.+|++|||| ..+++|++|++
T Consensus 1 ~rYDRQlrLwG---~~gQ~~L~~s~VlliG~gglGsEilKNLvL~GIg~~tIvD~~~V~~sDL~~nFfl~~~diGk~kA~ 77 (425)
T cd01493 1 QKYDRQLRLWG---EHGQAALESAHVCLLNATATGTEILKNLVLPGIGSFTIVDGSKVDEEDLGNNFFLDASSLGKSRAE 77 (425)
T ss_pred CcchHHHHHhH---HHHHHHHhhCeEEEEcCcHHHHHHHHHHHHcCCCeEEEECCCcCchhhccccccCChhhcCcHHHH
Confidence 48999999999 799999999999999999999999999999999999999999999999999986 78999999999
Q ss_pred HHHHHHHhhCCCcEEEEEeecccCcc-chHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEe
Q 026893 142 AAVQTLADINPDVVLESFTLNITTVQ-GFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMES 220 (231)
Q Consensus 142 ~~~~~l~~~np~v~v~~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~ 220 (231)
+++++|+++||+|+++.+...++... +.. .++.++|+||+|.++...+..++++|+++++|+|.+
T Consensus 78 ~~~~~L~eLNp~V~i~~~~e~~~~ll~~~~--------------~f~~~fdiVI~t~~~~~~~~~L~~~c~~~~iPlI~~ 143 (425)
T cd01493 78 ATCELLQELNPDVNGSAVEESPEALLDNDP--------------SFFSQFTVVIATNLPESTLLRLADVLWSANIPLLYV 143 (425)
T ss_pred HHHHHHHHHCCCCEEEEEecccchhhhhHH--------------HHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 99999999999999999887654311 111 245799999999999999999999999999999999
Q ss_pred CccCceeEEeC
Q 026893 221 GKQSSSCIVFL 231 (231)
Q Consensus 221 g~~g~~g~vf~ 231 (231)
++.|++|++++
T Consensus 144 ~s~G~~G~v~v 154 (425)
T cd01493 144 RSYGLYGYIRI 154 (425)
T ss_pred ecccCEEEEEE
Confidence 99999999975
No 22
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=100.00 E-value=3.4e-33 Score=252.99 Aligned_cols=159 Identities=33% Similarity=0.476 Sum_probs=143.3
Q ss_pred cCCcccccCCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-Cc
Q 026893 54 DMSSEVVDSNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RP 132 (231)
Q Consensus 54 ~~~~~~~~~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~ 132 (231)
.++.++. .+|+||+.+..+|. ++|++|++++|+|+||||+|++++++|+++||++|+|+|+|.|+++|++||++ .+
T Consensus 107 ~~s~~~~--~~y~r~i~l~~~g~-~~q~~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d~v~~sNl~Rq~l~~~ 183 (376)
T PRK08762 107 LLTDEQD--ERYSRHLRLPEVGE-EGQRRLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHDVVDRSNLQRQILHTE 183 (376)
T ss_pred CCCHHHH--HHHHHhcchhhcCH-HHHHHHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEecchhhccccccch
Confidence 3454433 69999999977775 89999999999999999999999999999999999999999999999999985 88
Q ss_pred CccCCcHHHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHH
Q 026893 133 EQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNE 212 (231)
Q Consensus 133 ~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~ 212 (231)
+|+|++|+++++++++++||+++++.+...+++ ++... .+.++|+||+|+|++++|..++++|++
T Consensus 184 ~diG~~Ka~~~~~~l~~~np~v~v~~~~~~~~~-~~~~~--------------~~~~~D~Vv~~~d~~~~r~~ln~~~~~ 248 (376)
T PRK08762 184 DRVGQPKVDSAAQRLAALNPDVQVEAVQERVTS-DNVEA--------------LLQDVDVVVDGADNFPTRYLLNDACVK 248 (376)
T ss_pred hhCCCcHHHHHHHHHHHHCCCCEEEEEeccCCh-HHHHH--------------HHhCCCEEEECCCCHHHHHHHHHHHHH
Confidence 999999999999999999999999999877764 34443 346899999999999999999999999
Q ss_pred cCCcEEEeCccCceeEEe
Q 026893 213 LNQTWMESGKQSSSCIVF 230 (231)
Q Consensus 213 ~~~p~i~~g~~g~~g~vf 230 (231)
+++|||.+++.|+.|+|.
T Consensus 249 ~~ip~i~~~~~g~~g~v~ 266 (376)
T PRK08762 249 LGKPLVYGAVFRFEGQVS 266 (376)
T ss_pred cCCCEEEEEeccCEEEEE
Confidence 999999999999999875
No 23
>cd01484 E1-2_like Ubiquitin activating enzyme (E1), repeat 2-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homologou
Probab=100.00 E-value=4.4e-33 Score=236.69 Aligned_cols=131 Identities=27% Similarity=0.448 Sum_probs=120.0
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccC-CCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~-~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
+|+|+|+||+||+++++|+++|+|+|+|+|.|.|+.+||+||| |+++|+|++|+++++++++++||+++++++..++.+
T Consensus 1 kVlvvG~GGlG~eilk~La~~Gvg~i~ivD~D~Ve~sNLnRQflf~~~dvGk~Ka~va~~~l~~~np~v~i~~~~~~i~~ 80 (234)
T cd01484 1 KVLLVGAGGIGCELLKNLALMGFGQIHVIDMDTIDVSNLNRQFLFRPKDIGRPKSEVAAEAVNDRNPNCKVVPYQNKVGP 80 (234)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCEEcchhhccccCCChhhCChHHHHHHHHHHHHHCCCCEEEEEeccCCh
Confidence 6899999999999999999999999999999999999999998 488999999999999999999999999999988864
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCceeEEe
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSSSCIVF 230 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~~g~vf 230 (231)
.+.++. .+++++|+||+|+|+.++|.+++++|+++++|+|++|+.|+.|++.
T Consensus 81 ~~~~~~-------------~f~~~~DvVi~a~Dn~~aR~~ln~~c~~~~iplI~~g~~G~~G~v~ 132 (234)
T cd01484 81 EQDFND-------------TFFEQFHIIVNALDNIIARRYVNGMLIFLIVPLIESGTEGFKGNAQ 132 (234)
T ss_pred hhhchH-------------HHHhCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcccCCceEEE
Confidence 322211 2457999999999999999999999999999999999999999875
No 24
>COG0476 ThiF Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 2 [Coenzyme metabolism]
Probab=100.00 E-value=9.7e-33 Score=237.62 Aligned_cols=154 Identities=33% Similarity=0.569 Sum_probs=143.1
Q ss_pred CCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccC-CCcCccCCcHH
Q 026893 62 SNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKT 140 (231)
Q Consensus 62 ~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~-~~~~dvG~~Ka 140 (231)
..+|+||+.+|.+|. ++|++|+.++|+|+|+||+||+++++|+++|||+++|+|+|.|+.+|++||+ |+.+|+|++|+
T Consensus 8 ~~ry~Rqi~l~~~~~-~~q~~l~~s~vlvvG~GglG~~~~~~la~aGvg~l~i~D~d~v~~snL~rq~~~~~~dig~~Ka 86 (254)
T COG0476 8 IERYSRQILLPGIGG-EGQQKLKDSRVLVVGAGGLGSPAAKYLALAGVGKLTIVDFDTVELSNLQRQFLFTEADVGKPKA 86 (254)
T ss_pred HHhhcceeeecccCH-HHHHHHhhCCEEEEecChhHHHHHHHHHHcCCCeEEEEcCCcccccccCceeeecccccCCcHH
Confidence 479999999999886 6699999999999999999999999999999999999999999999999997 59999999999
Q ss_pred HHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEe
Q 026893 141 DAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMES 220 (231)
Q Consensus 141 ~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~ 220 (231)
+++++.++++||.++++++...++. ++... .+.++|+|++|+||+++|..+|++|+.+++||++.
T Consensus 87 ~~a~~~l~~ln~~v~v~~~~~~l~~-~~~~~--------------~~~~~d~v~d~~dn~~~r~~iN~~~~~~~~pli~~ 151 (254)
T COG0476 87 EVAAKALRKLNPLVEVVAYLERLDE-ENAEE--------------LIAQFDVVLDCTDNFETRYLINDACVKLGIPLVHG 151 (254)
T ss_pred HHHHHHHHHhCCCCeEEEeecccCh-hhHHH--------------HhccCCEEEECCCCHHHHHHHHHHHHHhCCCeEee
Confidence 9999999999999999999988775 33332 46799999999999999999999999999999999
Q ss_pred CccCceeEEeC
Q 026893 221 GKQSSSCIVFL 231 (231)
Q Consensus 221 g~~g~~g~vf~ 231 (231)
++.|+.|++++
T Consensus 152 ~~~~~~g~~~~ 162 (254)
T COG0476 152 GAIGFEGQVTV 162 (254)
T ss_pred eeccceEEEEE
Confidence 99999999863
No 25
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=100.00 E-value=6.9e-33 Score=231.68 Aligned_cols=147 Identities=28% Similarity=0.479 Sum_probs=135.4
Q ss_pred CCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcHH
Q 026893 62 SNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTKT 140 (231)
Q Consensus 62 ~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~Ka 140 (231)
..+|+|..++.| .++.+||++++|+|+|+|||||++++.|+|+|+|+|+|+|.|.|..+|+|||.- ..+++|++|+
T Consensus 10 ~~rf~~~~~l~G---~~~lekl~~~~V~VvGiGGVGSw~veALaRsGig~itlID~D~v~vTN~NRQi~A~~~~iGk~Kv 86 (263)
T COG1179 10 RQRFGGIARLYG---EDGLEKLKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDMDDVCVTNTNRQIHALLGDIGKPKV 86 (263)
T ss_pred HHHhhhHHHHcC---hhHHHHHhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEecccccccccchhhHhhhhhcccHHH
Confidence 468888888866 689999999999999999999999999999999999999999999999999986 6789999999
Q ss_pred HHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEe
Q 026893 141 DAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMES 220 (231)
Q Consensus 141 ~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~ 220 (231)
+++++++..+||+++|+++...++. ++.+.|+ ..++|+||||+|+..++..+..+|+++++|+|.+
T Consensus 87 ~vm~eri~~InP~c~V~~~~~f~t~-en~~~~~-------------~~~~DyvIDaiD~v~~Kv~Li~~c~~~ki~vIss 152 (263)
T COG1179 87 EVMKERIKQINPECEVTAINDFITE-ENLEDLL-------------SKGFDYVIDAIDSVRAKVALIAYCRRNKIPVISS 152 (263)
T ss_pred HHHHHHHHhhCCCceEeehHhhhCH-hHHHHHh-------------cCCCCEEEEchhhhHHHHHHHHHHHHcCCCEEee
Confidence 9999999999999999999998885 7777663 4589999999999999999999999999999988
Q ss_pred CccCc
Q 026893 221 GKQSS 225 (231)
Q Consensus 221 g~~g~ 225 (231)
|-.|.
T Consensus 153 ~Gag~ 157 (263)
T COG1179 153 MGAGG 157 (263)
T ss_pred ccccC
Confidence 76553
No 26
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=6.5e-33 Score=274.62 Aligned_cols=150 Identities=22% Similarity=0.339 Sum_probs=140.6
Q ss_pred ccCCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCc
Q 026893 60 VDSNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMT 138 (231)
Q Consensus 60 ~~~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~ 138 (231)
+|+++||||+++|| .++|+||++++|+|+||||+|+++|++|+++|||+|+|+|+|.|+.+|++|||| +++|+|++
T Consensus 2 id~~lYsRQi~l~G---~eaq~kL~~s~VLIiG~gGLG~EiaKnL~laGVg~iti~D~d~v~~sdL~rQf~~~~~dIGk~ 78 (1008)
T TIGR01408 2 IDEALYSRQLYVLG---DEAMQKMAKSNVLISGMGGLGLEIAKNLVLAGVKSVTLHDTEKCQAWDLSSNFFLSEDDVGRN 78 (1008)
T ss_pred chHhhhhhHHHhcC---HHHHHHHhhCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCeecHhhCCCceecchHHcCch
Confidence 46789999999988 799999999999999999999999999999999999999999999999999986 88999999
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcC--Cc
Q 026893 139 KTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELN--QT 216 (231)
Q Consensus 139 Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~--~p 216 (231)
|+++++++|+++||+|+|+++...++. .++.++|+||+|.++.+.+..|+++|++++ +|
T Consensus 79 Kaea~~~~L~eLNp~V~V~~~~~~l~~-------------------e~l~~fdvVV~t~~~~~~~~~in~~cr~~~~~I~ 139 (1008)
T TIGR01408 79 RAEAVVKKLAELNPYVHVSSSSVPFNE-------------------EFLDKFQCVVLTEMSLPLQKEINDFCHSQCPPIA 139 (1008)
T ss_pred HHHHHHHHHHHHCCCceEEEecccCCH-------------------HHHcCCCEEEECCCCHHHHHHHHHHHHHcCCCeE
Confidence 999999999999999999999876652 134689999999999999999999999999 99
Q ss_pred EEEeCccCceeEEeC
Q 026893 217 WMESGKQSSSCIVFL 231 (231)
Q Consensus 217 ~i~~g~~g~~g~vf~ 231 (231)
||.+++.|++|+||.
T Consensus 140 fI~~~~~G~~G~vf~ 154 (1008)
T TIGR01408 140 FISADVRGLFGSLFC 154 (1008)
T ss_pred EEEEeecceEEEEEe
Confidence 999999999999984
No 27
>TIGR01408 Ube1 ubiquitin-activating enzyme E1. This model represents the full length, over a thousand amino acids, of a multicopy family of eukaryotic proteins, many of which are designated ubiquitin-activating enzyme E1. Members have two copies of the ThiF family domain (pfam00899), a repeat found in ubiquitin-activating proteins (pfam02134), and other regions.
Probab=100.00 E-value=1.3e-32 Score=272.50 Aligned_cols=155 Identities=24% Similarity=0.407 Sum_probs=140.6
Q ss_pred CCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcC-----ceEEEEeCCccccccccccC-CCcCcc
Q 026893 62 SNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGI-----GRLLLYDYDKVELANMNRLF-FRPEQV 135 (231)
Q Consensus 62 ~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv-----~~i~LiD~D~v~~~Nl~R~~-~~~~dv 135 (231)
.+||+||+++|| .++|++|++++|+||||||+||+++++|+++|| |+|+|+|.|.|+.+||+||| |+.+|+
T Consensus 399 ~~RYdrqi~l~G---~~~Q~kL~~~kVlvvGaGGlG~e~lknLal~Gv~~~~~G~i~IvD~D~Ve~SNLnRQfLf~~~dI 475 (1008)
T TIGR01408 399 GDRYDAQIAVFG---DTFQQKLQNLNIFLVGCGAIGCEMLKNFALMGVGTGKKGMITVTDPDLIEKSNLNRQFLFRPHHI 475 (1008)
T ss_pred hhhhHHHHHHcC---HHHHHHHhhCcEEEECCChHHHHHHHHHHHhCCCcCCCCeEEEECCCEecccccCcCcCCChhHc
Confidence 579999999988 699999999999999999999999999999999 89999999999999999998 589999
Q ss_pred CCcHHHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCC
Q 026893 136 GMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQ 215 (231)
Q Consensus 136 G~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~ 215 (231)
|++|+++++++++++||+++++++...+... +...|.. .++.++|+||+|+|+.++|.++++.|+.+++
T Consensus 476 Gk~Ka~vaa~~l~~~Np~v~I~~~~~~v~~~-~e~i~~~----------~f~~~~dvVi~alDn~~aR~~vn~~c~~~~i 544 (1008)
T TIGR01408 476 GKPKSYTAADATLKINPQIKIDAHQNRVGPE-TETIFND----------EFYEKLDVVINALDNVEARRYVDSRCLAFLK 544 (1008)
T ss_pred CcHHHHHHHHHHHHHCCCCEEEEEEeecChh-hhhhhhH----------HHhhCCCEEEECCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999999999999888642 1111100 2457999999999999999999999999999
Q ss_pred cEEEeCccCceeEEe
Q 026893 216 TWMESGKQSSSCIVF 230 (231)
Q Consensus 216 p~i~~g~~g~~g~vf 230 (231)
|+|++|+.|+.|++.
T Consensus 545 Pli~~gt~G~~G~v~ 559 (1008)
T TIGR01408 545 PLLESGTLGTKGNTQ 559 (1008)
T ss_pred CEEEEeccCceeeEE
Confidence 999999999999875
No 28
>KOG2017 consensus Molybdopterin synthase sulfurylase [Coenzyme transport and metabolism]
Probab=100.00 E-value=1.1e-33 Score=245.81 Aligned_cols=158 Identities=29% Similarity=0.500 Sum_probs=147.1
Q ss_pred cCCcccccCCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccC-CCc
Q 026893 54 DMSSEVVDSNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF-FRP 132 (231)
Q Consensus 54 ~~~~~~~~~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~-~~~ 132 (231)
.+|.++. .|||||+.+.++|. .+|.+|++++|+||||||+||.++..|+.+|||+|-|+|+|+||.+|+.||. +++
T Consensus 38 ~Ls~dei--~RYsRQlilpe~gV-~GQ~~Lk~s~VLVVGaGGLGcPa~~YLaaaGvG~lGiVD~DvVe~sNlhRQVlh~e 114 (427)
T KOG2017|consen 38 GLSLDEI--LRYSRQLILPEFGV-HGQLSLKNSSVLVVGAGGLGCPAAQYLAAAGVGRLGIVDYDVVELSNLHRQVLHTE 114 (427)
T ss_pred CCCHHHH--Hhhhheeecccccc-ccccccCCccEEEEccCCCCCHHHHHHHHcCCCeecccccceeehhhHHHHHhhhh
Confidence 4565544 89999999999995 9999999999999999999999999999999999999999999999999997 589
Q ss_pred CccCCcHHHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHH
Q 026893 133 EQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNE 212 (231)
Q Consensus 133 ~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~ 212 (231)
+.+|++|+++++..++.+||.++|++|+..++..+.++ .+++||+|+||+||..+|..|++.|.-
T Consensus 115 a~vg~~Ka~sA~~~lr~lNs~v~v~~y~~~L~~sNa~~---------------Ii~~YdvVlDCTDN~~TRYLisD~CVl 179 (427)
T KOG2017|consen 115 ARVGMHKAESAAAFLRRLNSHVEVQTYNEFLSSSNAFD---------------IIKQYDVVLDCTDNVPTRYLISDVCVL 179 (427)
T ss_pred hhhhhHHHHHHHHHHHhcCCCceeeechhhccchhHHH---------------HhhccceEEEcCCCccchhhhhhHHHH
Confidence 99999999999999999999999999999998755544 458999999999999999999999999
Q ss_pred cCCcEEEeCccCceeEE
Q 026893 213 LNQTWMESGKQSSSCIV 229 (231)
Q Consensus 213 ~~~p~i~~g~~g~~g~v 229 (231)
+|+|++.+..-++-|++
T Consensus 180 LgkpLVSgSaLr~EGQL 196 (427)
T KOG2017|consen 180 LGKPLVSGSALRWEGQL 196 (427)
T ss_pred cCCccccccccccccee
Confidence 99999999999999987
No 29
>PRK14852 hypothetical protein; Provisional
Probab=100.00 E-value=1.4e-32 Score=267.93 Aligned_cols=151 Identities=27% Similarity=0.439 Sum_probs=139.5
Q ss_pred CchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccC-CCcCccCCcHHH
Q 026893 63 NPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTD 141 (231)
Q Consensus 63 ~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~-~~~~dvG~~Ka~ 141 (231)
.+|+||+.+|+ .++|+||++++|+||||||+||+++++|+++|||+|+|+|+|.|+.+|+|||+ ++.+|+|++|++
T Consensus 313 ~ry~Rqi~lig---~e~Q~kL~~srVlVvGlGGlGs~ia~~LAraGVG~I~L~D~D~Ve~SNLNRQ~l~~~~dIG~~Kae 389 (989)
T PRK14852 313 IAFSRNLGLVD---YAGQRRLLRSRVAIAGLGGVGGIHLMTLARTGIGNFNLADFDAYSPVNLNRQYGASIASFGRGKLD 389 (989)
T ss_pred HHhhchHhhcC---HHHHHHHhcCcEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEecccccccccCCChhhCCChHHH
Confidence 47999999977 69999999999999999999999999999999999999999999999999998 588999999999
Q ss_pred HHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCH--HHHHHHHHHHHHcCCcEEE
Q 026893 142 AAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNY--EARMAVNQACNELNQTWME 219 (231)
Q Consensus 142 ~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~--~~r~~i~~~~~~~~~p~i~ 219 (231)
+++++++++||+++|+++...++. ++.+.| ++++|+||+|+|++ +++..+++.|+++++|+|.
T Consensus 390 vaa~~l~~INP~v~I~~~~~~I~~-en~~~f--------------l~~~DiVVDa~D~~~~~~rr~l~~~c~~~~IP~I~ 454 (989)
T PRK14852 390 VMTERALSVNPFLDIRSFPEGVAA-ETIDAF--------------LKDVDLLVDGIDFFALDIRRRLFNRALELGIPVIT 454 (989)
T ss_pred HHHHHHHHHCCCCeEEEEecCCCH-HHHHHH--------------hhCCCEEEECCCCccHHHHHHHHHHHHHcCCCEEE
Confidence 999999999999999999998875 566654 46899999999974 5788899999999999999
Q ss_pred eCccCceeEEeC
Q 026893 220 SGKQSSSCIVFL 231 (231)
Q Consensus 220 ~g~~g~~g~vf~ 231 (231)
+|+.|+.|++++
T Consensus 455 ag~~G~~g~v~v 466 (989)
T PRK14852 455 AGPLGYSCALLV 466 (989)
T ss_pred eeccccCeeEEE
Confidence 999999998863
No 30
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=100.00 E-value=2.6e-32 Score=231.64 Aligned_cols=135 Identities=33% Similarity=0.523 Sum_probs=123.6
Q ss_pred hHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcHHHHHHHHHHhhCCCcE
Q 026893 77 VENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTKTDAAVQTLADINPDVV 155 (231)
Q Consensus 77 ~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~Ka~~~~~~l~~~np~v~ 155 (231)
.++|++|++++|+|+||||+||+++++|+|+||++|+|+|+|.|+++|+|||++ ..+++|++|+++++++|+++||+++
T Consensus 3 ~e~~~~L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D~V~~sNlnRq~~~~~~diG~~Kae~~~~~l~~inP~~~ 82 (231)
T cd00755 3 EEGLEKLRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFDVVCVSNLNRQIHALLSTVGKPKVEVMAERIRDINPECE 82 (231)
T ss_pred HHHHHHHhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCCEECchhhcchhCcChhhCCCcHHHHHHHHHHHHCCCcE
Confidence 489999999999999999999999999999999999999999999999999986 6899999999999999999999999
Q ss_pred EEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 156 LESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 156 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
++++...++. ++...+ ...++|+||+|+|+..++..++++|+++++|+|.++..|.
T Consensus 83 V~~~~~~i~~-~~~~~l-------------~~~~~D~VvdaiD~~~~k~~L~~~c~~~~ip~I~s~g~g~ 138 (231)
T cd00755 83 VDAVEEFLTP-DNSEDL-------------LGGDPDFVVDAIDSIRAKVALIAYCRKRKIPVISSMGAGG 138 (231)
T ss_pred EEEeeeecCH-hHHHHH-------------hcCCCCEEEEcCCCHHHHHHHHHHHHHhCCCEEEEeCCcC
Confidence 9999988874 444443 2247999999999999999999999999999999877665
No 31
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=100.00 E-value=6.1e-32 Score=213.37 Aligned_cols=130 Identities=35% Similarity=0.611 Sum_probs=119.8
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
+|+|+||||+||+++++|+++|+++|+|+|+|.++++|++||+| .++++|++|+++++++++++||+++++.++..+++
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d~v~~~nl~r~~~~~~~~vG~~Ka~~~~~~l~~~~p~v~i~~~~~~~~~ 80 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFDTVELSNLNRQFLARQADIGKPKAEVAARRLNELNPGVNVTAVPEGISE 80 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCCCcCcchhhccccCChhHCCChHHHHHHHHHHHHCCCcEEEEEeeecCh
Confidence 68999999999999999999999999999999999999999987 58999999999999999999999999999887764
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCceeEEeC
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSSSCIVFL 231 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~~g~vf~ 231 (231)
.. .. ..+.++|+||+|+|+.+.+..++++|+++++|||++|+.|+.|++++
T Consensus 81 ~~-~~--------------~~~~~~diVi~~~d~~~~~~~l~~~~~~~~i~~i~~~~~g~~g~~~~ 131 (143)
T cd01483 81 DN-LD--------------DFLDGVDLVIDAIDNIAVRRALNRACKELGIPVIDAGGLGLGGDIQV 131 (143)
T ss_pred hh-HH--------------HHhcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEEcCCCcEEEEEE
Confidence 22 12 23579999999999999999999999999999999999999999874
No 32
>cd01489 Uba2_SUMO Ubiquitin activating enzyme (E1) subunit UBA2. UBA2 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. UBA2 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.98 E-value=7.1e-32 Score=237.56 Aligned_cols=131 Identities=31% Similarity=0.470 Sum_probs=120.9
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
+|+|||+||+||+++++|+++|||+|+|+|.|.++.+|++|||+ +++|+|++|+++++++++++||+++++++...+++
T Consensus 1 kVlIVGaGGlG~EiaKnLal~Gvg~ItIvD~D~Ve~sNLnRQflf~~~dVGk~Kaevaa~~l~~lNp~v~V~~~~~~i~~ 80 (312)
T cd01489 1 KVLVVGAGGIGCELLKNLVLTGFGEIHIIDLDTIDLSNLNRQFLFRKKHVGKSKAQVAKEAVLSFNPNVKIVAYHANIKD 80 (312)
T ss_pred CEEEECCCHHHHHHHHHHHHhcCCeEEEEcCCCcchhhcCcCccCChhHcCcHHHHHHHHHHHHHCCCCeEEEEeccCCC
Confidence 69999999999999999999999999999999999999999984 89999999999999999999999999999988875
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCceeEEeC
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSSSCIVFL 231 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~~g~vf~ 231 (231)
...... +++++|+||+|.|+.++|.+++++|+.+++|||++|+.|+.|++++
T Consensus 81 ~~~~~~--------------f~~~~DvVv~a~Dn~~ar~~in~~c~~~~ip~I~~gt~G~~G~v~v 132 (312)
T cd01489 81 PDFNVE--------------FFKQFDLVFNALDNLAARRHVNKMCLAADVPLIESGTTGFLGQVQV 132 (312)
T ss_pred ccchHH--------------HHhcCCEEEECCCCHHHHHHHHHHHHHCCCCEEEEecCcceeEEEE
Confidence 322222 4579999999999999999999999999999999999999999874
No 33
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=99.97 E-value=1.1e-31 Score=225.50 Aligned_cols=144 Identities=30% Similarity=0.413 Sum_probs=127.9
Q ss_pred HhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHH
Q 026893 69 MALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLA 148 (231)
Q Consensus 69 ~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~ 148 (231)
..++++|. ++|++|++++|+|+||||+||+++++|+++|+++|+|+|.|.|+.+|++||+|.++|+|++|+++++++++
T Consensus 13 ~~~~~~g~-~~q~~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~dvG~~Ka~~a~~~l~ 91 (212)
T PRK08644 13 MLASRHTP-KLLEKLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFDVVEPSNLNRQQYFISQIGMPKVEALKENLL 91 (212)
T ss_pred HHHhhcCH-HHHHHHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEeccccccccEeehhhCCChHHHHHHHHHH
Confidence 34556775 99999999999999999999999999999999999999999999999999988788999999999999999
Q ss_pred hhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHc-CCcEEEeCccCcee
Q 026893 149 DINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNEL-NQTWMESGKQSSSC 227 (231)
Q Consensus 149 ~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~-~~p~i~~g~~g~~g 227 (231)
++||+++++.+...+++ ++... .++++|+||+|+|++++|..+++.|+++ ++|+|.++..+.+|
T Consensus 92 ~lnp~v~v~~~~~~i~~-~~~~~--------------~~~~~DvVI~a~D~~~~r~~l~~~~~~~~~~p~I~~~~~~~~~ 156 (212)
T PRK08644 92 EINPFVEIEAHNEKIDE-DNIEE--------------LFKDCDIVVEAFDNAETKAMLVETVLEHPGKKLVAASGMAGYG 156 (212)
T ss_pred HHCCCCEEEEEeeecCH-HHHHH--------------HHcCCCEEEECCCCHHHHHHHHHHHHHhCCCCEEEeehhhccC
Confidence 99999999999988875 34433 3468999999999999999999999999 99999875444444
Q ss_pred E
Q 026893 228 I 228 (231)
Q Consensus 228 ~ 228 (231)
+
T Consensus 157 ~ 157 (212)
T PRK08644 157 D 157 (212)
T ss_pred C
Confidence 3
No 34
>PRK07877 hypothetical protein; Provisional
Probab=99.97 E-value=4.4e-31 Score=253.82 Aligned_cols=144 Identities=25% Similarity=0.413 Sum_probs=133.8
Q ss_pred CCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcC-ceEEEEeCCccccccccccCCCcCccCCcHH
Q 026893 62 SNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGI-GRLLLYDYDKVELANMNRLFFRPEQVGMTKT 140 (231)
Q Consensus 62 ~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv-~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka 140 (231)
..+|+||..+++ .++|++|++++|+|+||| +||.++.+|+++|| |+|+|+|+|.|+.+|||||+++..|+|++|+
T Consensus 87 ~~r~~Rn~~~ig---~~~Q~~L~~~~V~IvG~G-lGs~~a~~LaraGvvG~l~lvD~D~ve~sNLnRq~~~~~diG~~Kv 162 (722)
T PRK07877 87 AVRLDRNRNKIT---AEEQERLGRLRIGVVGLS-VGHAIAHTLAAEGLCGELRLADFDTLELSNLNRVPAGVFDLGVNKA 162 (722)
T ss_pred HHHhhchhhhCC---HHHHHHHhcCCEEEEEec-HHHHHHHHHHHccCCCeEEEEcCCEEcccccccccCChhhcccHHH
Confidence 479999999865 699999999999999996 99999999999996 9999999999999999999889999999999
Q ss_pred HHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEe
Q 026893 141 DAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMES 220 (231)
Q Consensus 141 ~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~ 220 (231)
+++++++.++||+++|+++...++. ++++.| ++++|+||||+||+++|..+++.|.++++|||.+
T Consensus 163 ~~a~~~l~~inp~i~v~~~~~~i~~-~n~~~~--------------l~~~DlVvD~~D~~~~R~~ln~~a~~~~iP~i~~ 227 (722)
T PRK07877 163 VVAARRIAELDPYLPVEVFTDGLTE-DNVDAF--------------LDGLDVVVEECDSLDVKVLLREAARARRIPVLMA 227 (722)
T ss_pred HHHHHHHHHHCCCCEEEEEeccCCH-HHHHHH--------------hcCCCEEEECCCCHHHHHHHHHHHHHcCCCEEEE
Confidence 9999999999999999999999985 667654 4689999999999999999999999999999988
Q ss_pred CccC
Q 026893 221 GKQS 224 (231)
Q Consensus 221 g~~g 224 (231)
+..+
T Consensus 228 ~~~~ 231 (722)
T PRK07877 228 TSDR 231 (722)
T ss_pred cCCC
Confidence 8544
No 35
>cd01488 Uba3_RUB Ubiquitin activating enzyme (E1) subunit UBA3. UBA3 is part of the heterodimeric activating enzyme (E1), specific for the Rub family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins. consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin(-like) by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by Rub family of ubiquitin-like proteins (Ublps) activates SCF ubiquitin ligases and is involved in cell cycle control, signaling and embryogenesis. UBA3 contains both the nucleotide-binding motif involved in adenylation and the catalytic cysteine involved in the thioester intermediate and Ublp transfer to E2.
Probab=99.97 E-value=5.1e-31 Score=229.95 Aligned_cols=128 Identities=23% Similarity=0.375 Sum_probs=117.2
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccC-CCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~-~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
+|+|||+||+||+++++|+++|||+|+|+|.|.|+.+||+||| |+++|+|++|+++++++++++||+++++++...+.+
T Consensus 1 kVlVVGaGGlG~eilknLal~Gvg~I~IvD~D~Ve~SNLnRQfLf~~~dIGk~KAevaa~~l~~~np~v~I~~~~~~i~~ 80 (291)
T cd01488 1 KILVIGAGGLGCELLKNLALSGFRNIHVIDMDTIDVSNLNRQFLFREKDIGKPKAEVAAKFVNDRVPGVNVTPHFGKIQD 80 (291)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEecccccCcCcccChHHcchHHHHHHHHHHHHHCCCCEEEEEecccCc
Confidence 6999999999999999999999999999999999999999998 589999999999999999999999999999888874
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHc--------CCcEEEeCccCceeEEe
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNEL--------NQTWMESGKQSSSCIVF 230 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~--------~~p~i~~g~~g~~g~vf 230 (231)
. + . .+++++|+||+|+|+.++|+++++.|.+. ++|+|++|+.|+.|++.
T Consensus 81 ~-~-~--------------~f~~~fdvVi~alDn~~aR~~in~~~~~~~~~~~~~~~iPlI~~gt~G~~G~v~ 137 (291)
T cd01488 81 K-D-E--------------EFYRQFNIIICGLDSIEARRWINGTLVSLLLYEDPESIIPLIDGGTEGFKGHAR 137 (291)
T ss_pred h-h-H--------------HHhcCCCEEEECCCCHHHHHHHHHHHHHhccccccccCccEEEEEEcccEEEEE
Confidence 2 1 2 24579999999999999999999998664 49999999999999874
No 36
>cd01490 Ube1_repeat2 Ubiquitin activating enzyme (E1), repeat 2. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the second repeat of Ub-E1.
Probab=99.97 E-value=5.5e-30 Score=233.66 Aligned_cols=133 Identities=28% Similarity=0.472 Sum_probs=120.3
Q ss_pred cEEEEecCchHHHHHHHHHHhcC-----ceEEEEeCCccccccccccC-CCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGI-----GRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv-----~~i~LiD~D~v~~~Nl~R~~-~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
+|+||||||+||+++++|+++|| |+|+|+|.|.|+.+||+||| |+++|+|++|+++++++++++||+++++++.
T Consensus 1 kVlvVGaGGlGcE~lKnLal~Gv~~g~~G~I~IvD~D~Ie~SNLnRQfLf~~~dIGk~Ka~vAa~~l~~lNp~v~I~a~~ 80 (435)
T cd01490 1 KVFLVGAGAIGCELLKNFALMGVGTGESGEITVTDMDNIEKSNLNRQFLFRPHDVGKPKSEVAAAAVKAMNPDLKITALQ 80 (435)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCcCCCCeEEEECCCCccccccCcCccCChhHcCcHHHHHHHHHHHHHCCCCEEEEEe
Confidence 68999999999999999999999 99999999999999999998 5899999999999999999999999999999
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCceeEEe
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSSSCIVF 230 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~~g~vf 230 (231)
..+.. ++.+.|. ..++.++|+|++|.|+.++|..+++.|+.+++|+|++|+.|+.|++.
T Consensus 81 ~~v~~-~~~~~~~----------~~f~~~~DvVi~alDn~~aR~~vn~~C~~~~iPli~~gt~G~~G~v~ 139 (435)
T cd01490 81 NRVGP-ETEHIFN----------DEFWEKLDGVANALDNVDARMYVDRRCVYYRKPLLESGTLGTKGNTQ 139 (435)
T ss_pred cccCh-hhhhhhh----------HHHhcCCCEEEECCCCHHHHHHHHHHHHHhCCCEEEEecccceeEEE
Confidence 88763 2222111 03567999999999999999999999999999999999999999875
No 37
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=99.96 E-value=1.3e-30 Score=244.73 Aligned_cols=156 Identities=20% Similarity=0.250 Sum_probs=127.6
Q ss_pred hhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccC-CCcCcc---CCcHHHHHHH
Q 026893 70 ALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF-FRPEQV---GMTKTDAAVQ 145 (231)
Q Consensus 70 ~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~-~~~~dv---G~~Ka~~~~~ 145 (231)
.-||+=..-+.++|++.+|+|+||||+||++|++|+++|||+|+|+|+|.|+.+|++||+ |+.+|+ |++||+++++
T Consensus 323 mkWRllP~l~~ekL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D~Ve~SNL~RQ~Lf~~~Dv~~~Gk~KA~aAa~ 402 (664)
T TIGR01381 323 MKWRLHPDLQLERYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNGKVSYSNPVRQSLSNFEDCLLGGRGKAETAQK 402 (664)
T ss_pred HhhhcCChhhHHHHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCCEECCCccccccccchhhhhhcCCcHHHHHHH
Confidence 344433224459999999999999999999999999999999999999999999999997 588888 9999999999
Q ss_pred HHHhhCCCcEEEEEeecc-------cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEE
Q 026893 146 TLADINPDVVLESFTLNI-------TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWM 218 (231)
Q Consensus 146 ~l~~~np~v~v~~~~~~i-------~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i 218 (231)
+|+++||+++++.+...+ ++ ++.+......+.-. ..++++|+||+|+||+++|..++.+|..+++|+|
T Consensus 403 ~Lk~InP~v~i~~~~~~Ipm~Gh~i~~-~~~~~~~~d~~~l~----~Li~~~DvV~d~tDn~esR~L~n~~c~~~~kplI 477 (664)
T TIGR01381 403 ALKRIFPSIQATGHRLTVPMPGHPIDE-KDVPELEKDIARLE----QLIKDHDVVFLLLDSREARWLPTVLCSRHKKIAI 477 (664)
T ss_pred HHHHHCCCcEEEEeeeeeccccccCCc-hhhhhccccHHHHH----HHHhhCCEEEECCCCHHHHHHHHHHHHHhCCCEE
Confidence 999999999999998875 22 11111000000000 2457899999999999999999999999999999
Q ss_pred EeCccCceeEEeC
Q 026893 219 ESGKQSSSCIVFL 231 (231)
Q Consensus 219 ~~g~~g~~g~vf~ 231 (231)
+++ .|+.|++++
T Consensus 478 ~aA-lGfdg~lvm 489 (664)
T TIGR01381 478 SAA-LGFDSYVVM 489 (664)
T ss_pred EEE-eccceEEEE
Confidence 985 799999864
No 38
>KOG2013 consensus SMT3/SUMO-activating complex, catalytic component UBA2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.2e-30 Score=231.76 Aligned_cols=140 Identities=30% Similarity=0.450 Sum_probs=129.7
Q ss_pred HHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccC-CCcCccCCcHHHHHHHHHHhhCCCcEE
Q 026893 78 ENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPDVVL 156 (231)
Q Consensus 78 ~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~-~~~~dvG~~Ka~~~~~~l~~~np~v~v 156 (231)
+.++.+.+.||++|||||+||+++++|+++|+++|+|+|-|+++.||||||| |..++||++|+.++++...+.||.+++
T Consensus 5 ~~~eai~~~riLvVGaGGIGCELLKnLal~gf~~IhiIDlDTIDlSNLNRQFLFrkkhVgqsKA~vA~~~v~~Fnpn~~l 84 (603)
T KOG2013|consen 5 EKHEAIKSGRILVVGAGGIGCELLKNLALTGFEEIHIIDLDTIDLSNLNRQFLFRKKHVGQSKATVAAKAVKQFNPNIKL 84 (603)
T ss_pred HHHHHhccCeEEEEecCcccHHHHHHHHHhcCCeeEEEeccceeccchhhhheeehhhcCchHHHHHHHHHHHhCCCCce
Confidence 6678899999999999999999999999999999999999999999999998 599999999999999999999999999
Q ss_pred EEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCceeEEeC
Q 026893 157 ESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSSSCIVFL 231 (231)
Q Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~~g~vf~ 231 (231)
.++..+|.+...--. ++++||+|+.|.||.++|.++|+.|.....|+|++|++|+.|||.+
T Consensus 85 ~~yhanI~e~~fnv~--------------ff~qfdiV~NaLDNlaAR~yVNr~C~~a~vPLIesGt~Gf~GQv~~ 145 (603)
T KOG2013|consen 85 VPYHANIKEPKFNVE--------------FFRQFDIVLNALDNLAARRYVNRMCLAASVPLIESGTGGFLGQVQV 145 (603)
T ss_pred EeccccccCcchHHH--------------HHHHHHHHHHhhccHHHHHHHHHHHHhhcCCceecCcccccceEEE
Confidence 999999987522222 3468999999999999999999999999999999999999999864
No 39
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=99.96 E-value=2.5e-29 Score=205.11 Aligned_cols=129 Identities=30% Similarity=0.418 Sum_probs=117.0
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccCc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTV 166 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~ 166 (231)
+|+|+||||+||+++++|+++|+++|+|+|.|.|+++|++||+|..+++|++|+++++++|+++||+++++++...++.
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D~v~~sNl~Rq~~~~~~vg~~Ka~~~~~~l~~lnp~v~i~~~~~~~~~- 79 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFDVVEPSNLNRQQYFLSQIGEPKVEALKENLREINPFVKIEAINIKIDE- 79 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCCEEcCcchhcccccHhhCCChHHHHHHHHHHHHCCCCEEEEEEeecCh-
Confidence 6899999999999999999999999999999999999999999888899999999999999999999999999988875
Q ss_pred cchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHc-CCcEEEeCccCceeEEe
Q 026893 167 QGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNEL-NQTWMESGKQSSSCIVF 230 (231)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~-~~p~i~~g~~g~~g~vf 230 (231)
++.+. .++++|+||+|+|+.++|..+++.|.+. ++|||.++..+.+|++.
T Consensus 80 ~~~~~--------------~l~~~DlVi~~~d~~~~r~~i~~~~~~~~~ip~i~~~~~~~~~~~~ 130 (174)
T cd01487 80 NNLEG--------------LFGDCDIVVEAFDNAETKAMLAESLLGNKNKPVVCASGMAGFGDSN 130 (174)
T ss_pred hhHHH--------------HhcCCCEEEECCCCHHHHHHHHHHHHHHCCCCEEEEehhhccCCeE
Confidence 44443 3568999999999999999888888776 99999998888877763
No 40
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=99.96 E-value=5.9e-29 Score=207.13 Aligned_cols=146 Identities=30% Similarity=0.469 Sum_probs=123.3
Q ss_pred HHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHH
Q 026893 67 RLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQT 146 (231)
Q Consensus 67 Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~ 146 (231)
|+...+|.|. +.|++|++++|+|+||||+||+++++|+++||++++|+|.|.|+++|++||+|..+++|++|+++++++
T Consensus 4 ~~~~~~~~~~-~~q~~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D~ve~sNL~Rq~~~~~~iG~~Ka~~~~~~ 82 (200)
T TIGR02354 4 RRALVARHTP-KIVQKLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFDVVEPSNLNRQQYKASQVGEPKTEALKEN 82 (200)
T ss_pred HHHHHHhcCH-HHHHHHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCCEEcccccccccCChhhCCCHHHHHHHHH
Confidence 3556777774 999999999999999999999999999999999999999999999999999888899999999999999
Q ss_pred HHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHH-HHcCCcEEEeCccCc
Q 026893 147 LADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQAC-NELNQTWMESGKQSS 225 (231)
Q Consensus 147 l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~-~~~~~p~i~~g~~g~ 225 (231)
|+++||+++++++...++. +++.. .+.++|+||+|+|+.++|..+.+.| +.++.+++-++ +|.
T Consensus 83 l~~inp~~~i~~~~~~i~~-~~~~~--------------~~~~~DlVi~a~Dn~~~k~~l~~~~~~~~~~~~ii~~-~g~ 146 (200)
T TIGR02354 83 ISEINPYTEIEAYDEKITE-ENIDK--------------FFKDADIVCEAFDNAEAKAMLVNAVLEKYKDKYLIAA-SGL 146 (200)
T ss_pred HHHHCCCCEEEEeeeeCCH-hHHHH--------------HhcCCCEEEECCCCHHHHHHHHHHHHHHcCCCcEEEE-ecc
Confidence 9999999999999988875 44443 3468999999999999998866555 55555443332 555
Q ss_pred eeEE
Q 026893 226 SCIV 229 (231)
Q Consensus 226 ~g~v 229 (231)
.|+.
T Consensus 147 ~g~~ 150 (200)
T TIGR02354 147 AGYD 150 (200)
T ss_pred ccCC
Confidence 5543
No 41
>cd01486 Apg7 Apg7 is an E1-like protein, that activates two different ubiquitin-like proteins, Apg12 and Apg8, and assigns them to specific E2 enzymes, Apg10 and Apg3, respectively. This leads to the covalent conjugation of Apg8 with phosphatidylethanolamine, an important step in autophagy. Autophagy is a dynamic membrane phenomenon for bulk protein degradation in the lysosome/vacuole.
Probab=99.96 E-value=8.5e-29 Score=215.35 Aligned_cols=133 Identities=20% Similarity=0.261 Sum_probs=115.4
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccC-CCcCc--cCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF-FRPEQ--VGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~-~~~~d--vG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
+|+|+|+||+||++|++|+++||++|+|+|+|.|+.+|++||+ |..+| +|++|+++++++|+++||+++++.+...+
T Consensus 1 kVLIvGaGGLGs~vA~~La~aGVg~ItlvD~D~Ve~sNL~RQ~L~~~~D~~iGk~Ka~aaa~~L~~iNP~v~v~~~~~~I 80 (307)
T cd01486 1 KCLLLGAGTLGCNVARNLLGWGVRHITFVDSGKVSYSNPVRQSLFTFEDCKGGKPKAEAAAERLKEIFPSIDATGIVLSI 80 (307)
T ss_pred CEEEECCCHHHHHHHHHHHHcCCCeEEEECCCEeccccCCcccccccchhhcCccHHHHHHHHHHHHCCCcEEEEeeeec
Confidence 6999999999999999999999999999999999999999997 58888 99999999999999999999999998765
Q ss_pred cCc-------------cchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCceeEEe
Q 026893 164 TTV-------------QGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSSSCIVF 230 (231)
Q Consensus 164 ~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~~g~vf 230 (231)
.-+ .+.+.+. .+++++|+||+|+|+.++|+.++.+|..+++|+|++ ..|+.|+++
T Consensus 81 pmpgh~~~~~~~~~~~~~~~~l~-----------~li~~~DvV~d~tDn~esR~L~~~~~~~~~k~~I~a-alGfdg~lv 148 (307)
T cd01486 81 PMPGHPISESEVPSTLKDVKRLE-----------ELIKDHDVIFLLTDSRESRWLPTLLSAAKNKLVINA-ALGFDSYLV 148 (307)
T ss_pred cccccccccccccccccCHHHHH-----------HHHhhCCEEEECCCCHHHHHHHHHHHHHhCCcEEEE-EeccceEEE
Confidence 100 1111111 245789999999999999999999999999999985 668889876
Q ss_pred C
Q 026893 231 L 231 (231)
Q Consensus 231 ~ 231 (231)
+
T Consensus 149 m 149 (307)
T cd01486 149 M 149 (307)
T ss_pred E
Confidence 4
No 42
>KOG2014 consensus SMT3/SUMO-activating complex, AOS1/RAD31 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.5e-28 Score=210.38 Aligned_cols=157 Identities=25% Similarity=0.386 Sum_probs=142.7
Q ss_pred cCCcccccCCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-Cc
Q 026893 54 DMSSEVVDSNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RP 132 (231)
Q Consensus 54 ~~~~~~~~~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~ 132 (231)
+++.++. ..||||+++|| .++|++|+++||+|+|.+|+|++++++|.++||+++++.|+-.|.+.+++-||+ ..
T Consensus 5 else~E~--alYDRQIRLWG---~~AQ~~lr~s~VLlig~k~lgaEiaKnivLaGV~~ltlLD~~~Vt~Ed~~~qFli~~ 79 (331)
T KOG2014|consen 5 ELSEQEI--ALYDRQIRLWG---LEAQRRLRKSHVLLIGGKGLGAEIAKNIVLAGVGSLTLLDDRLVTEEDVGAQFLISA 79 (331)
T ss_pred hhhHHHH--HHHHHHHHHcc---HHHHHhhhhceEEEecCchHHHHHHHHhhhcccceeEEeeccccchhcCCceeEEch
Confidence 4555433 79999999999 588999999999999999999999999999999999999999999999999997 78
Q ss_pred CccCCcHHHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHH
Q 026893 133 EQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNE 212 (231)
Q Consensus 133 ~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~ 212 (231)
+++|+.|+++..++++++||.|.+.....++.+.+ + .++.+||+||..-.+.+.+..+|..|++
T Consensus 80 ~~vg~~raeas~erl~~LNPmV~v~~d~edl~ek~--e--------------eff~qFdlVV~~~~s~e~~~kvn~icrk 143 (331)
T KOG2014|consen 80 SSVGQTRAEASLERLQDLNPMVDVSVDKEDLSEKD--E--------------EFFTQFDLVVATDQSREEKCKVNEICRK 143 (331)
T ss_pred hhhchHHHHHHHHHHHhcCCceEEEechhhhhhcc--h--------------hhhhceeEEEEeccchhhhhhHHHHHHh
Confidence 89999999999999999999999988877666421 1 3568999999999999999999999999
Q ss_pred cCCcEEEeCccCceeEEeC
Q 026893 213 LNQTWMESGKQSSSCIVFL 231 (231)
Q Consensus 213 ~~~p~i~~g~~g~~g~vf~ 231 (231)
++++|+.+++.|++||.|.
T Consensus 144 ~~i~F~a~d~~g~~Gy~F~ 162 (331)
T KOG2014|consen 144 LNIAFYAGDCFGLCGYAFA 162 (331)
T ss_pred cCceEEeccccceeeeeee
Confidence 9999999999999999984
No 43
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=99.95 E-value=3.2e-28 Score=207.57 Aligned_cols=130 Identities=31% Similarity=0.444 Sum_probs=115.8
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcC-----c-----eEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCC
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGI-----G-----RLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINP 152 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv-----~-----~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np 152 (231)
-+..+|+||||||+||+++++||++|+ | +|+|+|+|.|+++|++||+|.+.|+|++|++++++++..++
T Consensus 9 ~~~~~V~vvG~GGlGs~v~~~Lar~G~a~~~~G~~~g~~i~lvD~D~Ve~sNLnRQlf~~~dVG~~Ka~v~~~ri~~~~- 87 (244)
T TIGR03736 9 SRPVSVVLVGAGGTGSQVIAGLARLHHALKALGHPGGLAVTVYDDDTVSEANVGRQAFYPADVGQNKAIVLVNRLNQAM- 87 (244)
T ss_pred hCCCeEEEEcCChHHHHHHHHHHHccccccccCCCCCCEEEEECCCEEccchhhcccCChhHCCcHHHHHHHHHHHhcc-
Confidence 357899999999999999999999973 4 99999999999999999999999999999999999999888
Q ss_pred CcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHH--c-CCcEEEeCccCceeEE
Q 026893 153 DVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNE--L-NQTWMESGKQSSSCIV 229 (231)
Q Consensus 153 ~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~--~-~~p~i~~g~~g~~g~v 229 (231)
++++++++..+.. . . ++.++|+||+|+||.++|..|++.|.+ . ++||+++|+.+..|+|
T Consensus 88 ~~~i~a~~~~~~~-~---~--------------~~~~~DiVi~avDn~~aR~~l~~~~~~~~~~~~~~ld~Gn~~~~gqv 149 (244)
T TIGR03736 88 GTDWTAHPERVER-S---S--------------TLHRPDIVIGCVDNRAARLAILRAFEGGYSGYAYWLDLGNRADDGQV 149 (244)
T ss_pred CceEEEEEeeeCc-h---h--------------hhcCCCEEEECCCCHHHHHHHHHHHHHhcccccceecccCCCCCCcE
Confidence 8899999987764 1 1 235799999999999999999999988 2 4899999999998887
Q ss_pred eC
Q 026893 230 FL 231 (231)
Q Consensus 230 f~ 231 (231)
.+
T Consensus 150 ~~ 151 (244)
T TIGR03736 150 IL 151 (244)
T ss_pred EE
Confidence 53
No 44
>TIGR03603 cyclo_dehy_ocin bacteriocin biosynthesis cyclodehydratase, SagC family. Members of this protein family include enzymes related to SagC, a cyclodehydratase involved in the biosynthesis of streptolysin S in Streptococcus pyogenes from the protoxin polypeptide (product of the sagA gene). This protein family serves as a marker for widely distributed prokaryotic systems for making a general class of heterocycle-containing bacteriocins. Note that this model does not find all possible examples of bacteriocin biosynthesis cyclodehydratases, an in particular misses the E. coli plasmid protein McbB of microcin B17 biosynthesis.
Probab=99.95 E-value=4.2e-28 Score=214.82 Aligned_cols=139 Identities=10% Similarity=0.126 Sum_probs=127.3
Q ss_pred CchhHHHhhhh-cChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHH
Q 026893 63 NPYSRLMALQR-MGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTD 141 (231)
Q Consensus 63 ~~y~Rq~~l~~-~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~ 141 (231)
.||+||+.+.+ +|..++|++|++++|+ |||+||.++..||+ |||+|+|+|+|.|+.+|++ ..|+.+|+|++|++
T Consensus 53 ~ry~r~l~l~~~~~~~~~Q~kL~~s~Vl---~GGLGs~va~~La~-GVg~L~ivD~D~Ve~SNL~-~L~~~~diG~~K~~ 127 (318)
T TIGR03603 53 ITIIDNLTLKPMLIVEDYQKHLKKSKVL---LGKFGANIAYNLCN-NVGALFISDKTYFQETAEI-DLYSKEFILKKDIR 127 (318)
T ss_pred HHHHHHhcCccccCcHHHHHHHhhCeee---cccchHHHHHHHhC-CCCEEEEEcCCEechhhHH-HHhChhhcCcHHHH
Confidence 69999999977 4644689999999999 99999999999999 9999999999999999999 66899999999999
Q ss_pred HHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHH--HHHHHHHcCCcEEE
Q 026893 142 AAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMA--VNQACNELNQTWME 219 (231)
Q Consensus 142 ~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~--i~~~~~~~~~p~i~ 219 (231)
+++++|.++||.++++... ..++++|+|++|+|++..|.. +|++|.++++|||.
T Consensus 128 ~a~~~L~~lnp~v~i~~~~------------------------~li~~~DlVid~tDn~~~r~L~~iN~ac~~~~~PlV~ 183 (318)
T TIGR03603 128 DLTSNLDALELTKNVDELK------------------------DLLKDYNYIIICTEHSNISLLRGLNKLSKETKKPNTI 183 (318)
T ss_pred HHHHHHHHhCCCCEEeeHH------------------------HHhCCCCEEEECCCCccHhHHHHHHHHHHHHCCCEEE
Confidence 9999999999999986532 235789999999999999966 99999999999999
Q ss_pred eCccCceeEEe
Q 026893 220 SGKQSSSCIVF 230 (231)
Q Consensus 220 ~g~~g~~g~vf 230 (231)
+++.|..|++.
T Consensus 184 gav~g~~Gqv~ 194 (318)
T TIGR03603 184 AFIDGPFVFIT 194 (318)
T ss_pred EEEccCEEEEE
Confidence 99999999875
No 45
>PTZ00245 ubiquitin activating enzyme; Provisional
Probab=99.95 E-value=2.2e-27 Score=200.54 Aligned_cols=101 Identities=23% Similarity=0.290 Sum_probs=94.7
Q ss_pred CCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHH
Q 026893 62 SNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTD 141 (231)
Q Consensus 62 ~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~ 141 (231)
..+||||+++|| .++|+||++++|+|+|+||+|++++++|+++|||+|+|+|+|.|+.+|++|||+...++|++|++
T Consensus 6 ~~RYsRQIrLwG---~EgQ~KL~~SrVLVVG~GGLGsEVAKnLaLAGVGsItIvDdD~Ve~SNL~RQfl~~~dvGk~KAe 82 (287)
T PTZ00245 6 AVRYDRQIRLWG---KSTQQQLMHTSVALHGVAGAAAEAAKNLVLAGVRAVAVADEGLVTDADVCTNYLMQGEAGGTRGA 82 (287)
T ss_pred HHHHhHHHHHhC---HHHHHHHhhCeEEEECCCchHHHHHHHHHHcCCCeEEEecCCccchhhhccccccccccCCcHHH
Confidence 379999999987 69999999999999999999999999999999999999999999999999999744578999999
Q ss_pred HHHHHHHhhCCCcEEEEEeecccC
Q 026893 142 AAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 142 ~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
+++++|+++||+++|+++...++.
T Consensus 83 aAa~~L~eLNP~V~V~~i~~rld~ 106 (287)
T PTZ00245 83 RALGALQRLNPHVSVYDAVTKLDG 106 (287)
T ss_pred HHHHHHHHHCCCcEEEEcccccCC
Confidence 999999999999999999877764
No 46
>KOG2015 consensus NEDD8-activating complex, catalytic component UBA3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=7.5e-27 Score=201.64 Aligned_cols=138 Identities=25% Similarity=0.377 Sum_probs=125.2
Q ss_pred hHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccC-CCcCccCCcHHHHHHHHHHhhCCCcE
Q 026893 77 VENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF-FRPEQVGMTKTDAAVQTLADINPDVV 155 (231)
Q Consensus 77 ~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~-~~~~dvG~~Ka~~~~~~l~~~np~v~ 155 (231)
.+..+-+.+++|+|+|+||+||+++|+||.+|++.++++|-|.++.+|+|||| |.+.|+|++|++++++.+.+..|...
T Consensus 32 ~e~l~~l~~~kiLviGAGGLGCElLKnLal~gF~~~~viDmDTId~sNLNRQFLF~~~DiG~pKAqvAA~fvn~Rvp~~~ 111 (422)
T KOG2015|consen 32 EENLEFLQDCKILVIGAGGLGCELLKNLALSGFRQLHVIDMDTIDLSNLNRQFLFRESDIGEPKAQVAAEFVNRRVPGCV 111 (422)
T ss_pred HHHHHHHhhCcEEEEccCcccHHHHHhHHhhccceeEEEeecceecccchhhhcccccccCchhHHHHHHHHHhhCCCcE
Confidence 47788899999999999999999999999999999999999999999999998 69999999999999999999999999
Q ss_pred EEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHc---C-------CcEEEeCccCc
Q 026893 156 LESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNEL---N-------QTWMESGKQSS 225 (231)
Q Consensus 156 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~---~-------~p~i~~g~~g~ 225 (231)
|.+|..+|.+.. . .+++.|+++|+..|+.++|++||....+. | +|+||+|+.|+
T Consensus 112 v~~h~~kIqd~~--~--------------~FYk~F~~iicGLDsIeaRRwIN~mL~~l~~~g~~d~~~iiPlIDGGtEG~ 175 (422)
T KOG2015|consen 112 VVPHRQKIQDKP--I--------------SFYKRFDLIICGLDSIEARRWINGMLVRLKLEGNYDISSIIPLIDGGTEGF 175 (422)
T ss_pred EeeeecchhcCC--H--------------HHHhhhceEEecccchhHHHHHHHHHHHHHhccCCCccceeeeeecCcccc
Confidence 999998887521 2 35689999999999999999999877553 3 69999999999
Q ss_pred eeEEe
Q 026893 226 SCIVF 230 (231)
Q Consensus 226 ~g~vf 230 (231)
.|.+-
T Consensus 176 KG~ar 180 (422)
T KOG2015|consen 176 KGHAR 180 (422)
T ss_pred cceeE
Confidence 99763
No 47
>KOG2018 consensus Predicted dinucleotide-utilizing enzyme involved in molybdopterin and thiamine biosynthesis [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=1.1e-26 Score=200.03 Aligned_cols=131 Identities=27% Similarity=0.438 Sum_probs=119.5
Q ss_pred hHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcHHHHHHHHHHhhCCCcE
Q 026893 77 VENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTKTDAAVQTLADINPDVV 155 (231)
Q Consensus 77 ~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~Ka~~~~~~l~~~np~v~ 155 (231)
.++++||+++-|+||||||+||+++-+|+|+|+++|.|+|+|.|+.+.||||-. ...|+|.+|+.|+++.++++.||+.
T Consensus 66 ee~m~kl~~syVVVVG~GgVGSwv~nmL~RSG~qKi~iVDfdqVSlsSLNrHs~Atl~DVG~PK~~clkkh~skiaPw~e 145 (430)
T KOG2018|consen 66 EEGMEKLTNSYVVVVGAGGVGSWVANMLLRSGVQKIRIVDFDQVSLSSLNRHSCATLADVGTPKVMCLKKHFSKIAPWCE 145 (430)
T ss_pred hhHHHHhcCcEEEEEecCchhHHHHHHHHHhcCceEEEechhhccHhhhhhhhhhhHhhcCCchHHHHHHHHHhhCccce
Confidence 599999999999999999999999999999999999999999999999999976 7899999999999999999999999
Q ss_pred EEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeC
Q 026893 156 LESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESG 221 (231)
Q Consensus 156 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g 221 (231)
|++...-.+. ++-+. ....++|||+||.||.+++..+.++|..+++++|.+-
T Consensus 146 Idar~~l~~~-~s~ed-------------ll~gnPdFvvDciDNidtKVdLL~y~~~~~l~Viss~ 197 (430)
T KOG2018|consen 146 IDARNMLWTS-SSEED-------------LLSGNPDFVVDCIDNIDTKVDLLEYCYNHGLKVISST 197 (430)
T ss_pred ecHHHhhcCC-Cchhh-------------hhcCCCCeEeEhhhhhhhhhHHHHHHHHcCCceEecc
Confidence 9988766664 33333 2456799999999999999999999999999999754
No 48
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=5.8e-26 Score=214.58 Aligned_cols=153 Identities=25% Similarity=0.400 Sum_probs=138.4
Q ss_pred CCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcC-----ceEEEEeCCccccccccccC-CCcCcc
Q 026893 62 SNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGI-----GRLLLYDYDKVELANMNRLF-FRPEQV 135 (231)
Q Consensus 62 ~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv-----~~i~LiD~D~v~~~Nl~R~~-~~~~dv 135 (231)
.+||+-|++..| ...|+||.+.++.+||+|++||+.+||+|.+|+ |.|++.|.|.+|.||||||| |++.||
T Consensus 410 gsRYD~qiavfG---~~fqeKL~~~~~FlVGaGAIGCE~LKN~am~Gvg~g~~g~ItVTDmD~IEkSNLnRQFLFR~~dV 486 (1013)
T KOG2012|consen 410 GSRYDGQIAVFG---AKFQEKLADQKVFLVGAGAIGCELLKNFALMGVGCGNSGKITVTDMDHIEKSNLNRQFLFRPWDV 486 (1013)
T ss_pred cCccccchhhhc---hHHHHHHhhCcEEEEccchhhHHHHHhhhheeeccCCCCceEEeccchhhhccccceeecccccc
Confidence 469999999977 578999999999999999999999999999999 47999999999999999998 699999
Q ss_pred CCcHHHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCC
Q 026893 136 GMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQ 215 (231)
Q Consensus 136 G~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~ 215 (231)
|++|++++++....|||+++|+++...+.. +.-. .+.+.++...|+|..+.||.++|+++.+-|.-+.+
T Consensus 487 gk~KSe~AA~A~~~mNp~l~I~a~~~rvgp-eTE~----------If~D~Ff~~ld~VanALDNVdAR~YvD~RCv~~~k 555 (1013)
T KOG2012|consen 487 GKPKSEVAAAAARGMNPDLNIIALQNRVGP-ETEH----------IFNDEFFENLDGVANALDNVDARRYVDRRCVYYRK 555 (1013)
T ss_pred CchHHHHHHHHHHhcCCCceeeehhhccCc-cccc----------ccchhHHhhhHHHHHhhcchhhhhhhhhhhhhhcc
Confidence 999999999999999999999999988764 2111 12224778999999999999999999999999999
Q ss_pred cEEEeCccCceeE
Q 026893 216 TWMESGKQSSSCI 228 (231)
Q Consensus 216 p~i~~g~~g~~g~ 228 (231)
|++++|+.|..|.
T Consensus 556 PLLESGTlGTKGn 568 (1013)
T KOG2012|consen 556 PLLESGTLGTKGN 568 (1013)
T ss_pred chhhccCcCCccc
Confidence 9999999999994
No 49
>KOG2012 consensus Ubiquitin activating enzyme UBA1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=2.1e-25 Score=210.87 Aligned_cols=152 Identities=24% Similarity=0.371 Sum_probs=142.4
Q ss_pred cccccCCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCcc
Q 026893 57 SEVVDSNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQV 135 (231)
Q Consensus 57 ~~~~~~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dv 135 (231)
..++|++.||||+.+.| .++.+|+..++|+|.|+||+|.+|||||+++||+.+||.|...+..++|+.||| +++||
T Consensus 12 ~~~IDE~LYSRQLYVlG---~eAM~~m~~S~VLisGl~GLGvEIAKNliLaGVksvTlhD~~~~~~~DLssqf~L~E~Di 88 (1013)
T KOG2012|consen 12 SQEIDESLYSRQLYVLG---HEAMRRMQGSNVLISGLQGLGVEIAKNLILAGVKSVTLHDPRPVQLSDLSSQFYLSEEDI 88 (1013)
T ss_pred hhhhhhhhhhhhhhhcc---HHHHHHHhhCcEEEecCCcccHHHHhhHhhhccceEEeeCCCcccHHhhccceeeeHHhc
Confidence 44578899999999977 699999999999999999999999999999999999999999999999999986 99999
Q ss_pred CCcHHHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCC
Q 026893 136 GMTKTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQ 215 (231)
Q Consensus 136 G~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~ 215 (231)
|++++++..++|+++|+.|.|..++..++. .++++|++||.|-.+.+....|+++|+++++
T Consensus 89 gknRA~as~~~LaeLN~yV~V~v~t~~~~~-------------------e~L~~FqvVVlt~~~le~q~~i~~fch~~~i 149 (1013)
T KOG2012|consen 89 GKNRAEASVEKLAELNNYVPVVVLTGPLTE-------------------EFLSDFQVVVLTDASLEEQLKINDFCHSHGI 149 (1013)
T ss_pred CCchHHHHHHHHHHhhcceeeEEecCcccH-------------------HHHhCCcEEEEecCchHHHHHHHHHHHhcCe
Confidence 999999999999999999999998876652 3467999999999999999999999999999
Q ss_pred cEEEeCccCceeEEe
Q 026893 216 TWMESGKQSSSCIVF 230 (231)
Q Consensus 216 p~i~~g~~g~~g~vf 230 (231)
.||-+.+.|++|++|
T Consensus 150 ~fi~ad~RGLfg~lF 164 (1013)
T KOG2012|consen 150 AFIAADTRGLFGQLF 164 (1013)
T ss_pred EEEEeccchhhhhhh
Confidence 999999999999998
No 50
>KOG2016 consensus NEDD8-activating complex, APP-BP1/UBA5 component [Posttranslational modification, protein turnover, chaperones]
Probab=99.88 E-value=4.6e-23 Score=184.16 Aligned_cols=154 Identities=20% Similarity=0.258 Sum_probs=136.0
Q ss_pred CCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCC-CcCccCCcHH
Q 026893 62 SNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFF-RPEQVGMTKT 140 (231)
Q Consensus 62 ~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~-~~~dvG~~Ka 140 (231)
..+||||+++|+ ..+|..|..++|+++|||++||+++++|++.|||.|+++|+..|+.+++..+|| ..+++|++||
T Consensus 7 ~~kYDRQlRlwg---e~gQ~~le~a~vCll~~~~~g~e~lKnLvl~Gigs~tvvd~~~v~~~d~g~nF~~~~~~~GksrA 83 (523)
T KOG2016|consen 7 KTKYDRQLRLWG---EEGQAALESASVCLLNATPLGSEALKNLVLPGIGSFTVVDGSKVEQGDLGNNFFLDAKSIGKSRA 83 (523)
T ss_pred hhHHHHHHHHHH---HHhHhhhhhceEEEecCChhHHHHHHhhcccccccEEEEecceeeecchhhHHHHHHHhhchhHH
Confidence 479999999999 799999999999999999999999999999999999999999999999999998 7789999999
Q ss_pred HHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEe
Q 026893 141 DAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMES 220 (231)
Q Consensus 141 ~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~ 220 (231)
++..+.|+++||+|.-.......+ ..+ .++. .++..+++|+.+--+.+....+.++|+++++|++++
T Consensus 84 ~a~~e~LqeLN~~V~~~~vee~p~------~Li---~~~p----~ff~qFtvViatnl~E~~~~kl~~~l~~~~vpll~~ 150 (523)
T KOG2016|consen 84 EATLEFLQELNPSVSGSFVEESPD------FLI---DNDP----SFFSQFTVVIATNLNEQTLLKLAEILREANVPLLLT 150 (523)
T ss_pred HHHHHHHHHhChhhhcCccccChh------hhh---hcCc----hhhheeeeeeccccchhhhhhhHHHHHhcCCceEEE
Confidence 999999999999998555443221 111 1111 367899999999888888899999999999999999
Q ss_pred CccCceeEEeC
Q 026893 221 GKQSSSCIVFL 231 (231)
Q Consensus 221 g~~g~~g~vf~ 231 (231)
-+.|+.|+|.+
T Consensus 151 rs~Gl~G~iRI 161 (523)
T KOG2016|consen 151 RSYGLAGTIRI 161 (523)
T ss_pred eeecceEEEEE
Confidence 99999999874
No 51
>KOG2337 consensus Ubiquitin activating E1 enzyme-like protein [Coenzyme transport and metabolism]
Probab=99.58 E-value=3.5e-15 Score=136.15 Aligned_cols=156 Identities=20% Similarity=0.217 Sum_probs=119.7
Q ss_pred hhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccC-CCcCc---cCCcHHHHHHH
Q 026893 70 ALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLF-FRPEQ---VGMTKTDAAVQ 145 (231)
Q Consensus 70 ~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~-~~~~d---vG~~Ka~~~~~ 145 (231)
.-||.=..-..+++.+.||++.|+|.+||.+|++|.-.||++|+++|+.+|..+|-.||- |..+| -|++||+++++
T Consensus 325 MkWRlvPdLnLd~is~~KcLLLGAGTLGC~VAR~Ll~WGvRhITFvDn~kVsySNPVRQsLy~FEDc~~~g~~KAe~Aa~ 404 (669)
T KOG2337|consen 325 MKWRLVPDLNLDIISQTKCLLLGAGTLGCNVARNLLGWGVRHITFVDNGKVSYSNPVRQSLYTFEDCLGGGRPKAETAAQ 404 (669)
T ss_pred eeeeecCccchhhhhcceeEEecCcccchHHHHHHHhhccceEEEEecCeeeccchhhhhhhhhhhhhccCCcchHHHHH
Confidence 345543334578999999999999999999999999999999999999999999999985 55554 45899999999
Q ss_pred HHHhhCCCcEEEEEeecccC------ccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 026893 146 TLADINPDVVLESFTLNITT------VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWME 219 (231)
Q Consensus 146 ~l~~~np~v~v~~~~~~i~~------~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~ 219 (231)
+|++++|.+.-..+...|.- ...+++-...++.-. .+++..|+||..+|+.++|..-.-.|...++-.|+
T Consensus 405 rLk~IfP~m~atG~~lsIPMpGH~I~e~~~e~~~~D~~~Le----~LI~~HDviFLLtDsRESRWLPtll~a~~~KivIN 480 (669)
T KOG2337|consen 405 RLKEIFPSMEATGYVLSIPMPGHPIGESLLEQTKKDLKRLE----QLIKDHDVIFLLTDSRESRWLPTLLAAAKNKIVIN 480 (669)
T ss_pred HHHHhCccccccceEEeccCCCCccchhhHHHHHHHHHHHH----HHHhhcceEEEEeccchhhhhHHHHHhhhcceEee
Confidence 99999999987766655421 111111111111110 25689999999999999999988899888998888
Q ss_pred eCccCceeEEe
Q 026893 220 SGKQSSSCIVF 230 (231)
Q Consensus 220 ~g~~g~~g~vf 230 (231)
+..+ +-.|++
T Consensus 481 aALG-FDsylV 490 (669)
T KOG2337|consen 481 AALG-FDSYLV 490 (669)
T ss_pred eecc-cceeEE
Confidence 8754 444443
No 52
>TIGR03693 ocin_ThiF_like putative thiazole-containing bacteriocin maturation protein. Members of this protein family are found in a three-gene operon in Bacillus anthracis and related Bacillus species, where the other two genes are clearly identified with maturation of a putative thiazole-containing bacteriocin precursor. While there is no detectable pairwise sequence similarity between members of this family and the proposed cyclodehydratases such as SagC of Streptococcus pyogenes (see family TIGR03603), both families show similarity through PSI-BLAST to ThiF, a protein involved in biosynthesis of the thiazole moiety for thiamine biosynthesis. This family, therefore, may contribute to cyclodehydratase function in heterocycle-containing bacteriocin biosyntheses. In Bacillus licheniformis ATCC 14580, the bacteriocin precursor gene is adjacent to the gene for this protein.
Probab=99.54 E-value=4e-14 Score=132.93 Aligned_cols=138 Identities=17% Similarity=0.189 Sum_probs=110.1
Q ss_pred CchhHHHhhh----hcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCc
Q 026893 63 NPYSRLMALQ----RMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMT 138 (231)
Q Consensus 63 ~~y~Rq~~l~----~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~ 138 (231)
+||..|+... ..+. ...++.++++|+|+|+||+|+.++..|+.+|+++|+.+|.|.+ ++|++| ||..
T Consensus 104 ERYaaqI~F~~~fs~s~~-~rF~~qR~akVlVlG~Gg~~s~lv~sL~~sG~~~I~~vd~D~v-~SNlnR-------IgEl 174 (637)
T TIGR03693 104 DRYAAQIEFIEADADSGA-LKFELSRNAKILAAGSGDFLTKLVRSLIDSGFPRFHAIVTDAE-EHALDR-------IHEL 174 (637)
T ss_pred HHHHHHHHHHHHhccCch-hhhhhhhcccEEEEecCchHHHHHHHHHhcCCCcEEEEecccc-chhhhH-------HHHH
Confidence 7999999433 2332 5567779999999999999999999999999999999999999 999999 5665
Q ss_pred HHHHHHHHHHhhCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCH--HHHHHHHHHHHHcC--
Q 026893 139 KTDAAVQTLADINPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNY--EARMAVNQACNELN-- 214 (231)
Q Consensus 139 Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~--~~r~~i~~~~~~~~-- 214 (231)
++.+++ +||++.++.++. +..+.+. ..++++|+|+..+|++ ..-.++|+.|.+.|
T Consensus 175 -~e~A~~----~n~~v~v~~i~~--~~~~dl~--------------ev~~~~DiVi~vsDdy~~~~Lr~lN~acvkegk~ 233 (637)
T TIGR03693 175 -AEIAEE----TDDALLVQEIDF--AEDQHLH--------------EAFEPADWVLYVSDNGDIDDLHALHAFCKEEGKG 233 (637)
T ss_pred -HHHHHH----hCCCCceEeccC--CcchhHH--------------HhhcCCcEEEEECCCCChHHHHHHHHHHHHcCCC
Confidence 444443 899999988875 2223332 3568999999999954 45688999999999
Q ss_pred -CcEEEeCccCceeEEe
Q 026893 215 -QTWMESGKQSSSCIVF 230 (231)
Q Consensus 215 -~p~i~~g~~g~~g~vf 230 (231)
+|++.+|..+..|-+|
T Consensus 234 ~IPai~~G~~~liGPlf 250 (637)
T TIGR03693 234 FIPAICLKQVGLAGPVF 250 (637)
T ss_pred eEEEEEcccceeecceE
Confidence 6667778777777665
No 53
>COG4015 Predicted dinucleotide-utilizing enzyme of the ThiF/HesA family [General function prediction only]
Probab=98.79 E-value=4e-08 Score=78.35 Aligned_cols=122 Identities=25% Similarity=0.305 Sum_probs=96.1
Q ss_pred CcEEEEecCchHHHHHHHHH---HhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 86 FSVAIVGVGGVGSVAAEMLT---RCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La---~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
..|.++|||-+|--++-.|. |-|..+|..+|+..|++.++-- ...-..+|.+|++.+ ++|...++.-.+++++.+
T Consensus 19 GeV~l~G~GRLG~Rval~Lle~HRGGperi~v~Dgqrve~dDiih-rr~Ga~~GEyKv~Fi-~rl~~~~f~r~V~a~pE~ 96 (217)
T COG4015 19 GEVSLIGCGRLGVRVALDLLEVHRGGPERIYVFDGQRVEEDDIIH-RRLGAKVGEYKVDFI-KRLGRVHFGRRVEAFPEN 96 (217)
T ss_pred ceEEEEeccchhHHHHHHHHHHhcCCCeEEEEecCcccCchhhHH-HHhCCCcchhHHHHH-HHhCcCCCCceeeccccc
Confidence 45999999999999999887 4788999999999999999721 123468999999986 567778888899999999
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc---CCHHHHHHHHHHHHHcCCcEEEeCccCceeE
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV---DNYEARMAVNQACNELNQTWMESGKQSSSCI 228 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~---D~~~~r~~i~~~~~~~~~p~i~~g~~g~~g~ 228 (231)
++. +|+. .+.+ |+|+.|+ |....-..|..+|++.|+..|. ++|.||+
T Consensus 97 it~-dNlh---------------ll~g-DVvvi~IAGGdT~PvTaaii~ya~~rG~~Tis--T~GVFGi 146 (217)
T COG4015 97 ITK-DNLH---------------LLKG-DVVVICIAGGDTIPVTAAIINYAKERGIKTIS--TNGVFGI 146 (217)
T ss_pred ccc-cchh---------------hhcC-CEEEEEecCCCcchhHHHHHHHHHHcCceEee--cCceeec
Confidence 986 5554 2333 8888886 5667778999999999997664 4566654
No 54
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=98.57 E-value=3e-07 Score=83.53 Aligned_cols=102 Identities=22% Similarity=0.367 Sum_probs=77.0
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
.+|+|+|||++|+.+|..|++.|.++|++.|...- |+..++. ...+ ++++...++.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~------------------~~~~i~~---~~~~--~v~~~~vD~~d 58 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKE------------------KCARIAE---LIGG--KVEALQVDAAD 58 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHH------------------HHHHHHh---hccc--cceeEEecccC
Confidence 58999999999999999999999999999884432 2222221 2122 56677777776
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
.+.+.. .++++|+||+|...+-.. .+.+.|.+.|++++|......
T Consensus 59 ~~al~~--------------li~~~d~VIn~~p~~~~~-~i~ka~i~~gv~yvDts~~~~ 103 (389)
T COG1748 59 VDALVA--------------LIKDFDLVINAAPPFVDL-TILKACIKTGVDYVDTSYYEE 103 (389)
T ss_pred hHHHHH--------------HHhcCCEEEEeCCchhhH-HHHHHHHHhCCCEEEcccCCc
Confidence 555553 356789999998876654 889999999999999877654
No 55
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=98.35 E-value=7.6e-06 Score=68.31 Aligned_cols=98 Identities=14% Similarity=0.142 Sum_probs=66.4
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
.|++++|+|||.|.+|...++.|...| .++++++.+.- +.+.+.. +.-.+.....
T Consensus 7 ~l~~k~vLVIGgG~va~~ka~~Ll~~g-a~V~VIs~~~~--------------------~~l~~l~----~~~~i~~~~~ 61 (202)
T PRK06718 7 DLSNKRVVIVGGGKVAGRRAITLLKYG-AHIVVISPELT--------------------ENLVKLV----EEGKIRWKQK 61 (202)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCC-CeEEEEcCCCC--------------------HHHHHHH----hCCCEEEEec
Confidence 377899999999999999999999999 68999875321 0111111 1111222221
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQS 224 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g 224 (231)
.... ..+.++|+||.|+++.+....|.+.|. .++++-.+....
T Consensus 62 ~~~~-------------------~~l~~adlViaaT~d~elN~~i~~~a~-~~~lvn~~d~~~ 104 (202)
T PRK06718 62 EFEP-------------------SDIVDAFLVIAATNDPRVNEQVKEDLP-ENALFNVITDAE 104 (202)
T ss_pred CCCh-------------------hhcCCceEEEEcCCCHHHHHHHHHHHH-hCCcEEECCCCc
Confidence 1111 246789999999999999999999994 467654444433
No 56
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=98.26 E-value=3.5e-06 Score=73.93 Aligned_cols=56 Identities=27% Similarity=0.395 Sum_probs=47.4
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEE
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVL 156 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v 156 (231)
++.++|+|+|+||+|..++..|+..|+++|+|+|.+. .|++.+++.+...++.+.+
T Consensus 125 ~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR~~------------------~ka~~la~~l~~~~~~~~~ 180 (284)
T PRK12549 125 ASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDVDP------------------ARAAALADELNARFPAARA 180 (284)
T ss_pred ccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECCCH------------------HHHHHHHHHHHhhCCCeEE
Confidence 5678999999999999999999999999999998764 3888888888776665443
No 57
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=98.24 E-value=7.7e-06 Score=63.85 Aligned_cols=81 Identities=17% Similarity=0.321 Sum_probs=59.0
Q ss_pred HHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 80 YERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 80 ~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
...+++++|+|+|+||.|..++..|...|+++|+++..+.= |++.+++.+ +...+...
T Consensus 7 ~~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nRt~~------------------ra~~l~~~~----~~~~~~~~ 64 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNRTPE------------------RAEALAEEF----GGVNIEAI 64 (135)
T ss_dssp HSTGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEESSHH------------------HHHHHHHHH----TGCSEEEE
T ss_pred cCCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEECCHH------------------HHHHHHHHc----Ccccccee
Confidence 34688999999999999999999999999999999875432 777777776 44444444
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHH
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYE 201 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~ 201 (231)
+. + .+.. .+..+|+||.|+....
T Consensus 65 ~~--~---~~~~--------------~~~~~DivI~aT~~~~ 87 (135)
T PF01488_consen 65 PL--E---DLEE--------------ALQEADIVINATPSGM 87 (135)
T ss_dssp EG--G---GHCH--------------HHHTESEEEE-SSTTS
T ss_pred eH--H---HHHH--------------HHhhCCeEEEecCCCC
Confidence 42 1 1111 2358999999987653
No 58
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=98.19 E-value=2.1e-05 Score=65.86 Aligned_cols=102 Identities=18% Similarity=0.146 Sum_probs=73.2
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
|++++|+|||.|.+|..-++.|..+|. ++++++.+.- +.+.+ +.+. . .++.+...
T Consensus 7 l~gk~vlVvGgG~va~rk~~~Ll~~ga-~VtVvsp~~~--------------------~~l~~-l~~~-~--~i~~~~~~ 61 (205)
T TIGR01470 7 LEGRAVLVVGGGDVALRKARLLLKAGA-QLRVIAEELE--------------------SELTL-LAEQ-G--GITWLARC 61 (205)
T ss_pred cCCCeEEEECcCHHHHHHHHHHHHCCC-EEEEEcCCCC--------------------HHHHH-HHHc-C--CEEEEeCC
Confidence 678899999999999999999999996 8999986432 01111 2221 1 23344332
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCceeE
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSSSCI 228 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~~g~ 228 (231)
... ..+.++++||.|+++.+....|...|++.++++-.++--....+
T Consensus 62 ~~~-------------------~dl~~~~lVi~at~d~~ln~~i~~~a~~~~ilvn~~d~~e~~~f 108 (205)
T TIGR01470 62 FDA-------------------DILEGAFLVIAATDDEELNRRVAHAARARGVPVNVVDDPELCSF 108 (205)
T ss_pred CCH-------------------HHhCCcEEEEECCCCHHHHHHHHHHHHHcCCEEEECCCcccCeE
Confidence 221 23568999999999999999999999999999866665554443
No 59
>PF03435 Saccharop_dh: Saccharopine dehydrogenase ; InterPro: IPR005097 This entry represents saccharopine dehydrogenase and homospermidine synthase. Saccharopine reductase (SR) 1.5.1.10 from EC) catalyses the condensation of l-alpha-aminoadipate-delta-semialdehyde (AASA) with l-glutamate to give an imine, which is reduced by NADPH to give saccharopine []. In some organisms this enzyme is found as a bifunctional polypeptide with lysine ketoglutarate reductase (PF). Saccharopine dehydrogenase can also function as a saccharopine reductase. Homospermidine synthase proteins (2.5.1.44 from EC). Homospermidine synthase (HSS) catalyses the synthesis of the polyamine homospermidine from 2 mol putrescine in an NAD+-dependent reaction [].; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2AXQ_A 1E5Q_A 1FF9_A 1E5L_A 2PH5_A 3IC5_A 3ABI_A.
Probab=98.19 E-value=8.3e-06 Score=74.14 Aligned_cols=97 Identities=22% Similarity=0.416 Sum_probs=68.9
Q ss_pred EEEEecCchHHHHHHHHHHhcCc-eEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccCc
Q 026893 88 VAIVGVGGVGSVAAEMLTRCGIG-RLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTV 166 (231)
Q Consensus 88 V~IvG~GgvGs~ia~~La~~Gv~-~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~ 166 (231)
|+|+|+|.+|+.+++.|++.+-. ++++.|.+.- |++.+++.+ ....+.....++.+.
T Consensus 1 IlvlG~G~vG~~~~~~L~~~~~~~~v~va~r~~~------------------~~~~~~~~~----~~~~~~~~~~d~~~~ 58 (386)
T PF03435_consen 1 ILVLGAGRVGSAIARLLARRGPFEEVTVADRNPE------------------KAERLAEKL----LGDRVEAVQVDVNDP 58 (386)
T ss_dssp EEEE--SHHHHHHHHHHHCTTCE-EEEEEESSHH------------------HHHHHHT------TTTTEEEEE--TTTH
T ss_pred CEEEcCcHHHHHHHHHHhcCCCCCcEEEEECCHH------------------HHHHHHhhc----cccceeEEEEecCCH
Confidence 78999999999999999998854 9999986654 544444443 334555777777765
Q ss_pred cchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeC
Q 026893 167 QGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESG 221 (231)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g 221 (231)
+.+..+ ++++|+||+|...+ ....+.+.|.+.|++++|..
T Consensus 59 ~~l~~~--------------~~~~dvVin~~gp~-~~~~v~~~~i~~g~~yvD~~ 98 (386)
T PF03435_consen 59 ESLAEL--------------LRGCDVVINCAGPF-FGEPVARACIEAGVHYVDTS 98 (386)
T ss_dssp HHHHHH--------------HTTSSEEEE-SSGG-GHHHHHHHHHHHT-EEEESS
T ss_pred HHHHHH--------------HhcCCEEEECCccc-hhHHHHHHHHHhCCCeeccc
Confidence 556554 36889999999887 66789999999999999943
No 60
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=98.13 E-value=1.3e-05 Score=59.65 Aligned_cols=94 Identities=17% Similarity=0.198 Sum_probs=66.2
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
.+++++|+|||.|.+|..-+..|.++| .+++++..+. +.. . ..++ ....
T Consensus 4 ~l~~~~vlVvGgG~va~~k~~~Ll~~g-A~v~vis~~~-~~~--------------------~-------~~i~--~~~~ 52 (103)
T PF13241_consen 4 DLKGKRVLVVGGGPVAARKARLLLEAG-AKVTVISPEI-EFS--------------------E-------GLIQ--LIRR 52 (103)
T ss_dssp --TT-EEEEEEESHHHHHHHHHHCCCT-BEEEEEESSE-HHH--------------------H-------TSCE--EEES
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCC-CEEEEECCch-hhh--------------------h-------hHHH--HHhh
Confidence 467899999999999999999999999 6999988775 100 0 1222 2222
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCce
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSSS 226 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~~ 226 (231)
.+. ..+.++++||.|+++.+....|.+.|++.++|+-.+..-...
T Consensus 53 ~~~--------------------~~l~~~~lV~~at~d~~~n~~i~~~a~~~~i~vn~~D~p~~~ 97 (103)
T PF13241_consen 53 EFE--------------------EDLDGADLVFAATDDPELNEAIYADARARGILVNVVDDPELC 97 (103)
T ss_dssp S-G--------------------GGCTTESEEEE-SS-HHHHHHHHHHHHHTTSEEEETT-CCCC
T ss_pred hHH--------------------HHHhhheEEEecCCCHHHHHHHHHHHhhCCEEEEECCCcCCC
Confidence 111 135789999999999999999999999999998766554433
No 61
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=98.00 E-value=0.00014 Score=58.38 Aligned_cols=85 Identities=15% Similarity=0.250 Sum_probs=61.7
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
.|++++|+|||.|.+|...++.|...|. ++++++.+..+ .+.++ +.+. ....
T Consensus 10 ~l~~~~vlVvGGG~va~rka~~Ll~~ga-~V~VIsp~~~~------------------------~l~~l-~~i~--~~~~ 61 (157)
T PRK06719 10 NLHNKVVVIIGGGKIAYRKASGLKDTGA-FVTVVSPEICK------------------------EMKEL-PYIT--WKQK 61 (157)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCccCH------------------------HHHhc-cCcE--EEec
Confidence 5778999999999999999999999996 88888654321 11111 1222 2222
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNEL 213 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~ 213 (231)
.+.. ..+.++|+||.|+|+.+....+...|++.
T Consensus 62 ~~~~-------------------~dl~~a~lViaaT~d~e~N~~i~~~a~~~ 94 (157)
T PRK06719 62 TFSN-------------------DDIKDAHLIYAATNQHAVNMMVKQAAHDF 94 (157)
T ss_pred ccCh-------------------hcCCCceEEEECCCCHHHHHHHHHHHHHC
Confidence 1211 34678999999999999999999999885
No 62
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=97.85 E-value=0.00027 Score=59.85 Aligned_cols=100 Identities=11% Similarity=0.192 Sum_probs=70.7
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
++++++|+|||.|.++..=+..|..+|. +++++-.+.-. .. .+ +.+ ++.++ .+..
T Consensus 22 ~~~~~~VLVVGGG~VA~RK~~~Ll~~gA-~VtVVap~i~~-----------------el---~~-l~~-~~~i~--~~~r 76 (223)
T PRK05562 22 LSNKIKVLIIGGGKAAFIKGKTFLKKGC-YVYILSKKFSK-----------------EF---LD-LKK-YGNLK--LIKG 76 (223)
T ss_pred ECCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCCCH-----------------HH---HH-HHh-CCCEE--EEeC
Confidence 4568899999999999999999999994 78887655321 11 11 111 22333 3333
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
.... .++.++++||.|+|+.+....|.+.|++.++++..+.-...
T Consensus 77 ~~~~-------------------~dl~g~~LViaATdD~~vN~~I~~~a~~~~~lvn~vd~p~~ 121 (223)
T PRK05562 77 NYDK-------------------EFIKDKHLIVIATDDEKLNNKIRKHCDRLYKLYIDCSDYKK 121 (223)
T ss_pred CCCh-------------------HHhCCCcEEEECCCCHHHHHHHHHHHHHcCCeEEEcCCccc
Confidence 2221 24578999999999999999999999999988776654433
No 63
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=97.76 E-value=6.8e-05 Score=65.80 Aligned_cols=38 Identities=37% Similarity=0.494 Sum_probs=34.2
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCcc
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKV 120 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v 120 (231)
+++++|+|+|+||.|..++..|+..|+.+|+++|.+.-
T Consensus 125 ~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ 162 (283)
T PRK14027 125 AKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADLDTS 162 (283)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCHH
Confidence 45689999999999999999999999999999987643
No 64
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=97.73 E-value=0.00015 Score=63.78 Aligned_cols=37 Identities=11% Similarity=0.355 Sum_probs=33.6
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
+++++++|+|+||+|..++..|+..|+.+|++++.+.
T Consensus 124 ~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R~~ 160 (289)
T PRK12548 124 VKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNIKD 160 (289)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCc
Confidence 4578899999999999999999999999999998754
No 65
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=97.60 E-value=0.00018 Score=63.05 Aligned_cols=36 Identities=19% Similarity=0.423 Sum_probs=33.3
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++++|+|+|+||.|..++..|+..|+++|++++.+
T Consensus 123 ~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nRt 158 (282)
T TIGR01809 123 LAGFRGLVIGAGGTSRAAVYALASLGVTDITVINRN 158 (282)
T ss_pred cCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 467899999999999999999999999999999765
No 66
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=97.51 E-value=0.00039 Score=60.71 Aligned_cols=37 Identities=16% Similarity=0.333 Sum_probs=33.9
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
+.+++|+|+|+||+|..++..|...|+.++++++.+.
T Consensus 121 ~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R~~ 157 (278)
T PRK00258 121 LKGKRILILGAGGAARAVILPLLDLGVAEITIVNRTV 157 (278)
T ss_pred CCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeCCH
Confidence 5678999999999999999999999999999998653
No 67
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=97.48 E-value=0.00061 Score=57.26 Aligned_cols=100 Identities=15% Similarity=0.156 Sum_probs=67.5
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
.+.+++|+|||.|.+|.-=++.|..+|. +++++-.+. ++ . +...+.+ ++ +..+..
T Consensus 9 ~l~~k~VlvvGgG~va~rKa~~ll~~ga-~v~Vvs~~~-~~----------------e---l~~~~~~-~~---i~~~~~ 63 (210)
T COG1648 9 DLEGKKVLVVGGGSVALRKARLLLKAGA-DVTVVSPEF-EP----------------E---LKALIEE-GK---IKWIER 63 (210)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHhcCC-EEEEEcCCc-cH----------------H---HHHHHHh-cC---cchhhc
Confidence 4678899999999999999999999996 666655444 11 1 1111111 11 111111
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
.... ..+.++++||.|+|+.+....|.+.|.++++|+-.+.--.+
T Consensus 64 ~~~~-------------------~~~~~~~lviaAt~d~~ln~~i~~~a~~~~i~vNv~D~p~~ 108 (210)
T COG1648 64 EFDA-------------------EDLDDAFLVIAATDDEELNERIAKAARERRILVNVVDDPEL 108 (210)
T ss_pred ccCh-------------------hhhcCceEEEEeCCCHHHHHHHHHHHHHhCCceeccCCccc
Confidence 1110 23456999999999999999999999999998765554443
No 68
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=97.40 E-value=0.0014 Score=52.50 Aligned_cols=119 Identities=13% Similarity=0.250 Sum_probs=67.7
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
.+|.+||+|-.|+.++++|++.|. +++++|.+.-....+.. .|-..++..++...+- ++.+...+ +
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~-~v~~~d~~~~~~~~~~~-------~g~~~~~s~~e~~~~~--dvvi~~v~----~ 67 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGY-EVTVYDRSPEKAEALAE-------AGAEVADSPAEAAEQA--DVVILCVP----D 67 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTT-EEEEEESSHHHHHHHHH-------TTEEEESSHHHHHHHB--SEEEE-SS----S
T ss_pred CEEEEEchHHHHHHHHHHHHhcCC-eEEeeccchhhhhhhHH-------hhhhhhhhhhhHhhcc--cceEeecc----c
Confidence 589999999999999999999997 68888855321111100 0111112222333332 44443333 2
Q ss_pred ccchHHHHhh--hhccCCCCCCCCCCCcEEEEcc-CCHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 166 VQGFETFMSS--LRNKSFRPSKEGSGVDLVLSCV-DNYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 166 ~~~~~~~~~~--~~~~~~~~~~~~~~~DiVi~~~-D~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
.+..+..+.. +. ..+..-.++|+|+ -+++....+.+.+.+.|+.|+|+.++|.
T Consensus 68 ~~~v~~v~~~~~i~-------~~l~~g~iiid~sT~~p~~~~~~~~~~~~~g~~~vdapV~Gg 123 (163)
T PF03446_consen 68 DDAVEAVLFGENIL-------AGLRPGKIIIDMSTISPETSRELAERLAAKGVRYVDAPVSGG 123 (163)
T ss_dssp HHHHHHHHHCTTHG-------GGS-TTEEEEE-SS--HHHHHHHHHHHHHTTEEEEEEEEESH
T ss_pred chhhhhhhhhhHHh-------hccccceEEEecCCcchhhhhhhhhhhhhccceeeeeeeecc
Confidence 2333333322 11 1234566777765 4667788999999999999999998773
No 69
>PRK10637 cysG siroheme synthase; Provisional
Probab=97.39 E-value=0.0016 Score=60.87 Aligned_cols=100 Identities=16% Similarity=0.162 Sum_probs=69.8
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
.|++++|+|||.|.++..=++.|..+|. +++++-.+.- + . +..+...-+++.+..
T Consensus 9 ~l~~~~vlvvGgG~vA~rk~~~ll~~ga-~v~visp~~~-----------~------~-------~~~l~~~~~i~~~~~ 63 (457)
T PRK10637 9 QLRDRDCLLVGGGDVAERKARLLLDAGA-RLTVNALAFI-----------P------Q-------FTAWADAGMLTLVEG 63 (457)
T ss_pred EcCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCCCC-----------H------H-------HHHHHhCCCEEEEeC
Confidence 5789999999999999999999999996 7888644311 0 1 111111112334433
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
.... .++.++++||.|+|+.+....|.+.|++.++++-.+..-..
T Consensus 64 ~~~~-------------------~dl~~~~lv~~at~d~~~n~~i~~~a~~~~~lvN~~d~~~~ 108 (457)
T PRK10637 64 PFDE-------------------SLLDTCWLAIAATDDDAVNQRVSEAAEARRIFCNVVDAPKA 108 (457)
T ss_pred CCCh-------------------HHhCCCEEEEECCCCHHHhHHHHHHHHHcCcEEEECCCccc
Confidence 2221 24578999999999999999999999999988765554433
No 70
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=97.38 E-value=0.0023 Score=54.27 Aligned_cols=99 Identities=20% Similarity=0.248 Sum_probs=67.1
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
++++|+|+|-+|..+|+.|+..|. .++++|.|.- +++. .++. ....+++..+.++
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~-~Vv~Id~d~~------------------~~~~---~~~~---~~~~~~v~gd~t~ 55 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGH-NVVLIDRDEE------------------RVEE---FLAD---ELDTHVVIGDATD 55 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCC-ceEEEEcCHH------------------HHHH---Hhhh---hcceEEEEecCCC
Confidence 478999999999999999999986 6777776543 2211 1111 1223355555555
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHH-cCCcEEEeCc
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNE-LNQTWMESGK 222 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~-~~~p~i~~g~ 222 (231)
.+.+.+ ..+.++|.++.++++-.....+.....+ +|+|-+-+-+
T Consensus 56 ~~~L~~-------------agi~~aD~vva~t~~d~~N~i~~~la~~~~gv~~viar~ 100 (225)
T COG0569 56 EDVLEE-------------AGIDDADAVVAATGNDEVNSVLALLALKEFGVPRVIARA 100 (225)
T ss_pred HHHHHh-------------cCCCcCCEEEEeeCCCHHHHHHHHHHHHhcCCCcEEEEe
Confidence 444332 3578999999999997777766666654 8998776543
No 71
>PRK05854 short chain dehydrogenase; Provisional
Probab=97.37 E-value=0.0015 Score=57.65 Aligned_cols=89 Identities=21% Similarity=0.360 Sum_probs=65.0
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.| .||+|.++++.|++.|. ++.+++.+. .|.+.+.+.+.+.++...+..+..
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~-~Vil~~R~~------------------~~~~~~~~~l~~~~~~~~v~~~~~ 72 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGA-EVILPVRNR------------------AKGEAAVAAIRTAVPDAKLSLRAL 72 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHhCCCCceEEEEe
Confidence 5677888887 67999999999999996 677765432 256666667777777777778888
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++.+.+....+.+.+... ....|++|.+.
T Consensus 73 Dl~d~~sv~~~~~~~~~~-------~~~iD~li~nA 101 (313)
T PRK05854 73 DLSSLASVAALGEQLRAE-------GRPIHLLINNA 101 (313)
T ss_pred cCCCHHHHHHHHHHHHHh-------CCCccEEEECC
Confidence 888888888777655432 24677777653
No 72
>PLN02819 lysine-ketoglutarate reductase/saccharopine dehydrogenase
Probab=97.33 E-value=0.0014 Score=66.67 Aligned_cols=100 Identities=21% Similarity=0.290 Sum_probs=66.3
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCce-------------EEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHh
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGR-------------LLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLAD 149 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~-------------i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~ 149 (231)
-+.++|+|+|+|.+|+.+++.|++.+--+ +++.|.+ ..+++.+++.
T Consensus 567 ~~~~rIlVLGAG~VG~~~a~~La~~~~~~~~~~~~~~~~~~lV~VaD~~------------------~~~a~~la~~--- 625 (1042)
T PLN02819 567 KKSQNVLILGAGRVCRPAAEYLASVKTISYYGDDSEEPTDVHVIVASLY------------------LKDAKETVEG--- 625 (1042)
T ss_pred ccCCcEEEECCCHHHHHHHHHHHhCcCccccccccccccccEEEEECCC------------------HHHHHHHHHh---
Confidence 34779999999999999999999864322 4444432 2244444433
Q ss_pred hCCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeC
Q 026893 150 INPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESG 221 (231)
Q Consensus 150 ~np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g 221 (231)
.|++. +...++.+.+.+.. .++++|+||.|+-. .....+.+.|.+.|+.+++..
T Consensus 626 -~~~~~--~v~lDv~D~e~L~~--------------~v~~~DaVIsalP~-~~H~~VAkaAieaGkHvv~ek 679 (1042)
T PLN02819 626 -IENAE--AVQLDVSDSESLLK--------------YVSQVDVVISLLPA-SCHAVVAKACIELKKHLVTAS 679 (1042)
T ss_pred -cCCCc--eEEeecCCHHHHHH--------------hhcCCCEEEECCCc-hhhHHHHHHHHHcCCCEEECc
Confidence 34443 34444444333332 24579999999876 456788999999999888764
No 73
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=97.33 E-value=0.00047 Score=54.22 Aligned_cols=37 Identities=22% Similarity=0.416 Sum_probs=32.6
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
+++++|+|+|+|++|..++..|...|..+++++|.+.
T Consensus 17 ~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r~~ 53 (155)
T cd01065 17 LKGKKVLILGAGGAARAVAYALAELGAAKIVIVNRTL 53 (155)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcCCH
Confidence 4578999999999999999999999877899998653
No 74
>PRK09242 tropinone reductase; Provisional
Probab=97.29 E-value=0.0022 Score=54.40 Aligned_cols=90 Identities=14% Similarity=0.256 Sum_probs=66.7
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|+| .||+|..+++.|+..|. ++++++.+. .+.+.+.+.+...+|+.++..+..
T Consensus 7 ~~~k~~lItGa~~gIG~~~a~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~~ 67 (257)
T PRK09242 7 LDGQTALITGASKGIGLAIAREFLGLGA-DVLIVARDA------------------DALAQARDELAEEFPEREVHGLAA 67 (257)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhhCCCCeEEEEEC
Confidence 5678899998 58999999999999997 688877432 144556667777777788888888
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+.+..+++.+.. .+.+.|+||.|..
T Consensus 68 Dl~~~~~~~~~~~~~~~-------~~g~id~li~~ag 97 (257)
T PRK09242 68 DVSDDEDRRAILDWVED-------HWDGLHILVNNAG 97 (257)
T ss_pred CCCCHHHHHHHHHHHHH-------HcCCCCEEEECCC
Confidence 88877777776655432 2357899988874
No 75
>PRK06197 short chain dehydrogenase; Provisional
Probab=97.29 E-value=0.0018 Score=56.74 Aligned_cols=91 Identities=19% Similarity=0.243 Sum_probs=62.2
Q ss_pred HHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 81 ERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 81 ~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
..+.+++|+|.| .||+|.++++.|++.|. ++++++.+. .+.+.+.+.+.+..+...+..+
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~-~vi~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~ 72 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGA-HVVLAVRNL------------------DKGKAAAARITAATPGADVTLQ 72 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHhCCCCceEEE
Confidence 456778899998 68999999999999997 677766432 1444444555555555566677
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
..++.+.+.+..+++.+... +.+.|+||.+.
T Consensus 73 ~~Dl~d~~~v~~~~~~~~~~-------~~~iD~li~nA 103 (306)
T PRK06197 73 ELDLTSLASVRAAADALRAA-------YPRIDLLINNA 103 (306)
T ss_pred ECCCCCHHHHHHHHHHHHhh-------CCCCCEEEECC
Confidence 77887777777766554322 24678877665
No 76
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=97.29 E-value=0.0009 Score=59.40 Aligned_cols=97 Identities=15% Similarity=0.231 Sum_probs=64.6
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
+.+.+|+|+|+|.+|..+++.|...|+.+++++|.+.- |++.+++.+.. . ....
T Consensus 176 l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~~~------------------ra~~la~~~g~-----~--~~~~- 229 (311)
T cd05213 176 LKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRTYE------------------RAEELAKELGG-----N--AVPL- 229 (311)
T ss_pred ccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCCHH------------------HHHHHHHHcCC-----e--EEeH-
Confidence 57899999999999999999999989999999885432 55555554421 1 1111
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHc---CCcEEEeCcc
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNEL---NQTWMESGKQ 223 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~---~~p~i~~g~~ 223 (231)
+++.. .+..+|+||.|+.+......+...+... +.-++|.++-
T Consensus 230 ----~~~~~--------------~l~~aDvVi~at~~~~~~~~~~~~~~~~~~~~~~viDlavP 275 (311)
T cd05213 230 ----DELLE--------------LLNEADVVISATGAPHYAKIVERAMKKRSGKPRLIVDLAVP 275 (311)
T ss_pred ----HHHHH--------------HHhcCCEEEECCCCCchHHHHHHHHhhCCCCCeEEEEeCCC
Confidence 11221 2357899999998876633344444332 4567777753
No 77
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=97.26 E-value=0.0011 Score=58.20 Aligned_cols=108 Identities=14% Similarity=0.200 Sum_probs=69.0
Q ss_pred hcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcE--------
Q 026893 84 REFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVV-------- 155 (231)
Q Consensus 84 ~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~-------- 155 (231)
++++|+|+|+||.+..++..|+..|+.+|++++.+.- |++.+++.+.+..+.+.
T Consensus 125 ~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NRt~~------------------ra~~La~~~~~~~~~~~~~~~~~~~ 186 (283)
T COG0169 125 TGKRVLILGAGGAARAVAFALAEAGAKRITVVNRTRE------------------RAEELADLFGELGAAVEAAALADLE 186 (283)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeCCHH------------------HHHHHHHHhhhcccccccccccccc
Confidence 4689999999999999999999999999999886554 77777777776553211
Q ss_pred --------EEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEe
Q 026893 156 --------LESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMES 220 (231)
Q Consensus 156 --------v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~ 220 (231)
|.+-+....... ..++.+...+....+|+|.+.++. .-.+.++|++.|...++.
T Consensus 187 ~~~~~dliINaTp~Gm~~~~----------~~~~~~~~~l~~~~~v~D~vY~P~-~TplL~~A~~~G~~~idG 248 (283)
T COG0169 187 GLEEADLLINATPVGMAGPE----------GDSPVPAELLPKGAIVYDVVYNPL-ETPLLREARAQGAKTIDG 248 (283)
T ss_pred cccccCEEEECCCCCCCCCC----------CCCCCcHHhcCcCCEEEEeccCCC-CCHHHHHHHHcCCeEECc
Confidence 111111111000 000000023556667777777653 346778888888776553
No 78
>PTZ00142 6-phosphogluconate dehydrogenase; Provisional
Probab=97.26 E-value=0.0032 Score=59.10 Aligned_cols=125 Identities=10% Similarity=0.169 Sum_probs=75.8
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCc--HHHHHHHHHHhh-CCCcEEEEEeec
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMT--KTDAAVQTLADI-NPDVVLESFTLN 162 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~--Ka~~~~~~l~~~-np~v~v~~~~~~ 162 (231)
++|.|||+|-.|+.+|.+|++.|. +++++|.+.=....+.... ..-|.. -+.-+++.+..+ .|++.+-..+.
T Consensus 2 ~~IgvIGLG~MG~~lA~nL~~~G~-~V~v~dr~~~~~~~l~~~~---~~~g~~i~~~~s~~e~v~~l~~~d~Iil~v~~- 76 (470)
T PTZ00142 2 SDIGLIGLAVMGQNLALNIASRGF-KISVYNRTYEKTEEFVKKA---KEGNTRVKGYHTLEELVNSLKKPRKVILLIKA- 76 (470)
T ss_pred CEEEEEeEhHHHHHHHHHHHHCCC-eEEEEeCCHHHHHHHHHhh---hhcCCcceecCCHHHHHhcCCCCCEEEEEeCC-
Confidence 479999999999999999999998 7999987544322111100 000110 122233334433 35554433322
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCC-HHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDN-YEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~-~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
.+..+..++.+.. .+..=|+||++... +..-....+.+.+.|+.|++++++|-
T Consensus 77 ---~~~v~~vi~~l~~-------~L~~g~iIID~gn~~~~dt~~r~~~l~~~Gi~fldapVSGG 130 (470)
T PTZ00142 77 ---GEAVDETIDNLLP-------LLEKGDIIIDGGNEWYLNTERRIKRCEEKGILYLGMGVSGG 130 (470)
T ss_pred ---hHHHHHHHHHHHh-------hCCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEcCCCCCC
Confidence 2333444433321 34566899999865 44445566888899999999999984
No 79
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=97.23 E-value=0.00056 Score=62.82 Aligned_cols=78 Identities=14% Similarity=0.316 Sum_probs=58.4
Q ss_pred HHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 80 YERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 80 ~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
...|++++|+|||+|-+|.-+|++|+..|+.+|+++....- |++.+++.+. ..+..+
T Consensus 173 ~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNRT~e------------------rA~~La~~~~-----~~~~~l 229 (414)
T COG0373 173 FGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANRTLE------------------RAEELAKKLG-----AEAVAL 229 (414)
T ss_pred hcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcCCHH------------------HHHHHHHHhC-----CeeecH
Confidence 34588999999999999999999999999999999654433 8887887776 221111
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHH
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYE 201 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~ 201 (231)
+.+. ..+..+|+||.|+....
T Consensus 230 -------~el~--------------~~l~~~DvVissTsa~~ 250 (414)
T COG0373 230 -------EELL--------------EALAEADVVISSTSAPH 250 (414)
T ss_pred -------HHHH--------------HhhhhCCEEEEecCCCc
Confidence 2222 24579999999987654
No 80
>COG0300 DltE Short-chain dehydrogenases of various substrate specificities [General function prediction only]
Probab=97.23 E-value=0.0029 Score=54.94 Aligned_cols=89 Identities=21% Similarity=0.386 Sum_probs=71.3
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+..++++|.| .+|+|-++|+.||+-|. ++.|+-.+.- |-+.+++.|...+ .++++.++.
T Consensus 4 ~~~~~~lITGASsGIG~~~A~~lA~~g~-~liLvaR~~~------------------kL~~la~~l~~~~-~v~v~vi~~ 63 (265)
T COG0300 4 MKGKTALITGASSGIGAELAKQLARRGY-NLILVARRED------------------KLEALAKELEDKT-GVEVEVIPA 63 (265)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCcHH------------------HHHHHHHHHHHhh-CceEEEEEC
Confidence 4567899999 68999999999999997 6666554433 8888999999987 899999999
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.++.......+.... ..+|++|++..
T Consensus 64 DLs~~~~~~~l~~~l~~~~-------~~IdvLVNNAG 93 (265)
T COG0300 64 DLSDPEALERLEDELKERG-------GPIDVLVNNAG 93 (265)
T ss_pred cCCChhHHHHHHHHHHhcC-------CcccEEEECCC
Confidence 9999888887776655443 47888888753
No 81
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=97.23 E-value=0.00091 Score=59.18 Aligned_cols=48 Identities=35% Similarity=0.452 Sum_probs=38.7
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCc-eEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIG-RLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADIN 151 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~-~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~n 151 (231)
++|+|+|+|++|+.++..|+..|+. +|.|+|.+.= |++..+..|.+..
T Consensus 1 ~kI~IIGaG~vG~~~a~~l~~~g~~~ei~l~D~~~~------------------~~~~~a~dL~~~~ 49 (306)
T cd05291 1 RKVVIIGAGHVGSSFAYSLVNQGIADELVLIDINEE------------------KAEGEALDLEDAL 49 (306)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCcc------------------hhhHhHhhHHHHh
Confidence 3799999999999999999999985 9999996532 5666666666553
No 82
>PRK07063 short chain dehydrogenase; Provisional
Probab=97.22 E-value=0.0025 Score=54.11 Aligned_cols=91 Identities=15% Similarity=0.238 Sum_probs=65.0
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
++.+++|+|.| .||+|.++++.|+..|. ++.++|.+. .+.+.+.+.+...++..++..+.
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~-~vv~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~ 64 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGA-AVALADLDA------------------ALAERAAAAIARDVAGARVLAVP 64 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhccCCceEEEEE
Confidence 36678899998 57999999999999997 577776421 25555666666655566777888
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.++++.+.+..+++.+... +...|++|.+..
T Consensus 65 ~Dl~~~~~~~~~~~~~~~~-------~g~id~li~~ag 95 (260)
T PRK07063 65 ADVTDAASVAAAVAAAEEA-------FGPLDVLVNNAG 95 (260)
T ss_pred ccCCCHHHHHHHHHHHHHH-------hCCCcEEEECCC
Confidence 8888777777776554332 357888887753
No 83
>TIGR03882 cyclo_dehyd_2 bacteriocin biosynthesis cyclodehydratase domain. This model describes a ThiF-like domain of a fusion protein found in clusters associated with the production of TOMMs (thiazole/oxazole-modified microcins), small bacteriocins with characteristic heterocycle modifications. This domain is presumed to act as a cyclodehydratase, as do members of the SagC family modeled by TIGR03603.
Probab=97.21 E-value=0.00024 Score=58.91 Aligned_cols=54 Identities=30% Similarity=0.452 Sum_probs=48.2
Q ss_pred hHHHHHHhcCcEEEEecCchHHH-HHHHHHHhcCceE------EEE---eCCccccccccccCC
Q 026893 77 VENYERIREFSVAIVGVGGVGSV-AAEMLTRCGIGRL------LLY---DYDKVELANMNRLFF 130 (231)
Q Consensus 77 ~~~~~kl~~~~V~IvG~GgvGs~-ia~~La~~Gv~~i------~Li---D~D~v~~~Nl~R~~~ 130 (231)
...++++++++|.|+|.|+.|+. ++..|+.+|++.+ +++ |++..+.+|+||++.
T Consensus 97 ~~a~~~l~~~~V~V~~~G~~~~~~l~~aLaa~Gv~~~~~~a~l~vVl~~Dyl~p~L~~~n~~~l 160 (193)
T TIGR03882 97 AAALERLRQLTVTVLSFGEGGAAALAAALAAAGIRIAPSEADLTVVLTDDYLDPELAAINQRAL 160 (193)
T ss_pred HHHHHHHhcCcEEEEecCCCcHHHHHHHHHHcCCCccCCCCCEEEEEeCCCCChHHHHHHHHHH
Confidence 47789999999999999999999 9999999999988 888 999888888877643
No 84
>PRK07062 short chain dehydrogenase; Provisional
Probab=97.21 E-value=0.0035 Score=53.37 Aligned_cols=90 Identities=17% Similarity=0.303 Sum_probs=66.7
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
++++.++|.|+ ||+|.++++.|+..|. ++.+++.+. .+.+.+.+.+.+.+|..++..+..
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~~~~~~~~~ 66 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGA-SVAICGRDE------------------ERLASAEARLREKFPGARLLAARC 66 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCH------------------HHHHHHHHHHHhhCCCceEEEEEe
Confidence 56788999985 7999999999999998 577776542 244555666766677777878888
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+..+++.+... +...|++|.+..
T Consensus 67 D~~~~~~v~~~~~~~~~~-------~g~id~li~~Ag 96 (265)
T PRK07062 67 DVLDEADVAAFAAAVEAR-------FGGVDMLVNNAG 96 (265)
T ss_pred cCCCHHHHHHHHHHHHHh-------cCCCCEEEECCC
Confidence 888878777776654432 357899988764
No 85
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=97.21 E-value=0.00064 Score=62.75 Aligned_cols=37 Identities=22% Similarity=0.326 Sum_probs=33.6
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.+.+++|+|+|+||.|..++++|+..|+.+|+++...
T Consensus 178 ~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt 214 (414)
T PRK13940 178 NISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT 214 (414)
T ss_pred CccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4678999999999999999999999999999997654
No 86
>KOG4169 consensus 15-hydroxyprostaglandin dehydrogenase and related dehydrogenases [Lipid transport and metabolism; General function prediction only]
Probab=97.20 E-value=0.0019 Score=54.81 Aligned_cols=120 Identities=20% Similarity=0.345 Sum_probs=82.2
Q ss_pred HhcCcEEEE-ecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIV-GVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~Iv-G~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++++ |+||+|-.+++.|..-|+..+.+.| ..+| .+ +...|+++||.+++-.++.
T Consensus 3 ~tGKna~vtggagGIGl~~sk~Ll~kgik~~~i~~----~~En---------------~~-a~akL~ai~p~~~v~F~~~ 62 (261)
T KOG4169|consen 3 LTGKNALVTGGAGGIGLATSKALLEKGIKVLVIDD----SEEN---------------PE-AIAKLQAINPSVSVIFIKC 62 (261)
T ss_pred ccCceEEEecCCchhhHHHHHHHHHcCchheeehh----hhhC---------------HH-HHHHHhccCCCceEEEEEe
Confidence 457788888 5999999999999999999988866 2233 22 4567899999999999999
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC---CHHHH--HHHHHHH----HHcCCcEEEeCccCceeEE
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD---NYEAR--MAVNQAC----NELNQTWMESGKQSSSCIV 229 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D---~~~~r--~~i~~~~----~~~~~p~i~~g~~g~~g~v 229 (231)
+++....+.+.++++- ..+...|++|+-.. ..... ..+|-.. ....+||++--.+|..|.|
T Consensus 63 DVt~~~~~~~~f~ki~-------~~fg~iDIlINgAGi~~dkd~e~Ti~vNLtgvin~T~~alpyMdk~~gG~GGiI 132 (261)
T KOG4169|consen 63 DVTNRGDLEAAFDKIL-------ATFGTIDILINGAGILDDKDWERTINVNLTGVINGTQLALPYMDKKQGGKGGII 132 (261)
T ss_pred ccccHHHHHHHHHHHH-------HHhCceEEEEcccccccchhHHHhhccchhhhhhhhhhhhhhhhhhcCCCCcEE
Confidence 9987777766655432 23578899986532 11111 1111111 1234688887777777765
No 87
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=97.19 E-value=0.002 Score=56.69 Aligned_cols=36 Identities=17% Similarity=0.376 Sum_probs=33.3
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++++|+|+|+||.+..++..|+..|+++|+|++.+
T Consensus 122 ~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 122 IKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 567899999999999999999999999999999865
No 88
>COG1086 Predicted nucleoside-diphosphate sugar epimerases [Cell envelope biogenesis, outer membrane / Carbohydrate transport and metabolism]
Probab=97.17 E-value=0.0031 Score=59.69 Aligned_cols=109 Identities=18% Similarity=0.195 Sum_probs=81.4
Q ss_pred HHHHHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEE
Q 026893 78 ENYERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVL 156 (231)
Q Consensus 78 ~~~~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v 156 (231)
...+-+.+++|+|.| -|++||++++.+++.+.++|.++|.|.. |-..+...|++..|..++
T Consensus 243 ~i~~~~~gK~vLVTGagGSiGsel~~qil~~~p~~i~l~~~~E~------------------~~~~i~~el~~~~~~~~~ 304 (588)
T COG1086 243 LIGAMLTGKTVLVTGGGGSIGSELCRQILKFNPKEIILFSRDEY------------------KLYLIDMELREKFPELKL 304 (588)
T ss_pred HHHhHcCCCEEEEeCCCCcHHHHHHHHHHhcCCCEEEEecCchH------------------HHHHHHHHHHhhCCCcce
Confidence 557788999999998 5579999999999999999999998887 666667888888888888
Q ss_pred EEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc---------CCHHHH--------HHHHHHHHHcCCc
Q 026893 157 ESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV---------DNYEAR--------MAVNQACNELNQT 216 (231)
Q Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~---------D~~~~r--------~~i~~~~~~~~~p 216 (231)
..+-.++.+.+.+...++. .++|+|+-|. .|+..- ..+.+.|.++++.
T Consensus 305 ~~~igdVrD~~~~~~~~~~------------~kvd~VfHAAA~KHVPl~E~nP~Eai~tNV~GT~nv~~aa~~~~V~ 369 (588)
T COG1086 305 RFYIGDVRDRDRVERAMEG------------HKVDIVFHAAALKHVPLVEYNPEEAIKTNVLGTENVAEAAIKNGVK 369 (588)
T ss_pred EEEecccccHHHHHHHHhc------------CCCceEEEhhhhccCcchhcCHHHHHHHhhHhHHHHHHHHHHhCCC
Confidence 8888877766655544321 2488888553 333211 3466777777764
No 89
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=97.17 E-value=0.0021 Score=56.59 Aligned_cols=120 Identities=19% Similarity=0.286 Sum_probs=72.6
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhh-CCCcEEEEEeecccC
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADI-NPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~-np~v~v~~~~~~i~~ 165 (231)
+|.|||+|-.|+.++.+|++.|. +++++|.+.-....+. +.|-.-+....+..... ++++.+...+..
T Consensus 2 ~Ig~IGlG~MG~~mA~~L~~~g~-~v~v~dr~~~~~~~~~-------~~g~~~~~~~~e~~~~~~~~dvvi~~v~~~--- 70 (301)
T PRK09599 2 QLGMIGLGRMGGNMARRLLRGGH-EVVGYDRNPEAVEALA-------EEGATGADSLEELVAKLPAPRVVWLMVPAG--- 70 (301)
T ss_pred EEEEEcccHHHHHHHHHHHHCCC-eEEEEECCHHHHHHHH-------HCCCeecCCHHHHHhhcCCCCEEEEEecCC---
Confidence 69999999999999999999996 6888887642211110 11221121222333332 356666555532
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccC-CHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD-NYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D-~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
......++.+. ..+.+-++||+++. +...-..+.+.+.+.|+.|+|+.++|.
T Consensus 71 -~~~~~v~~~l~-------~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~~dapvsG~ 123 (301)
T PRK09599 71 -EITDATIDELA-------PLLSPGDIVIDGGNSYYKDDIRRAELLAEKGIHFVDVGTSGG 123 (301)
T ss_pred -cHHHHHHHHHH-------hhCCCCCEEEeCCCCChhHHHHHHHHHHHcCCEEEeCCCCcC
Confidence 11122222211 12344578888854 444556678999999999999998875
No 90
>PLN02350 phosphogluconate dehydrogenase (decarboxylating)
Probab=97.16 E-value=0.0042 Score=58.61 Aligned_cols=125 Identities=12% Similarity=0.147 Sum_probs=76.0
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCc---HHHHHHHHHHhh-CCCcEEEEEee
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMT---KTDAAVQTLADI-NPDVVLESFTL 161 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~---Ka~~~~~~l~~~-np~v~v~~~~~ 161 (231)
.+|.+||+|-.|+.+|.+|++.|. +++++|.+.=....+... ....|.. -+...++....+ .|++.+...+.
T Consensus 7 ~~IG~IGLG~MG~~mA~nL~~~G~-~V~V~NRt~~k~~~l~~~---~~~~Ga~~~~~a~s~~e~v~~l~~~dvIi~~v~~ 82 (493)
T PLN02350 7 SRIGLAGLAVMGQNLALNIAEKGF-PISVYNRTTSKVDETVER---AKKEGNLPLYGFKDPEDFVLSIQKPRSVIILVKA 82 (493)
T ss_pred CCEEEEeeHHHHHHHHHHHHhCCC-eEEEECCCHHHHHHHHHh---hhhcCCcccccCCCHHHHHhcCCCCCEEEEECCC
Confidence 479999999999999999999997 788888653211111000 0000211 112223333332 36666554432
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCC-HHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDN-YEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~-~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
.+..+..++.+. ..+.+=|+||||... ++.-..+.+.+.+.|+.|++++++|-
T Consensus 83 ----~~aV~~Vi~gl~-------~~l~~G~iiID~sT~~~~~t~~~~~~l~~~Gi~fldapVSGG 136 (493)
T PLN02350 83 ----GAPVDQTIKALS-------EYMEPGDCIIDGGNEWYENTERRIKEAAEKGLLYLGMGVSGG 136 (493)
T ss_pred ----cHHHHHHHHHHH-------hhcCCCCEEEECCCCCHHHHHHHHHHHHHcCCeEEeCCCcCC
Confidence 233333332221 124556899999775 55666778899999999999999985
No 91
>PRK08251 short chain dehydrogenase; Provisional
Probab=97.15 E-value=0.0043 Score=52.16 Aligned_cols=87 Identities=17% Similarity=0.239 Sum_probs=63.6
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
+++++|.| .||+|..+++.|++.|. ++.+.+.+.- +.+.+...+...+|...++.+..++
T Consensus 2 ~k~vlItGas~giG~~la~~l~~~g~-~v~~~~r~~~------------------~~~~~~~~~~~~~~~~~~~~~~~D~ 62 (248)
T PRK08251 2 RQKILITGASSGLGAGMAREFAAKGR-DLALCARRTD------------------RLEELKAELLARYPGIKVAVAALDV 62 (248)
T ss_pred CCEEEEECCCCHHHHHHHHHHHHcCC-EEEEEeCCHH------------------HHHHHHHHHHhhCCCceEEEEEcCC
Confidence 46788887 88999999999999995 7777775422 4445556666677888888888888
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++.+.+...++.+... +.+.|+||.+.
T Consensus 63 ~~~~~~~~~~~~~~~~-------~~~id~vi~~a 89 (248)
T PRK08251 63 NDHDQVFEVFAEFRDE-------LGGLDRVIVNA 89 (248)
T ss_pred CCHHHHHHHHHHHHHH-------cCCCCEEEECC
Confidence 8777776665544332 35788888775
No 92
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=97.12 E-value=0.0029 Score=52.62 Aligned_cols=36 Identities=33% Similarity=0.490 Sum_probs=32.2
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.+++++|+|+|+|.+|+.+++.|...|. +++++|.+
T Consensus 25 ~l~gk~v~I~G~G~vG~~~A~~L~~~G~-~Vvv~D~~ 60 (200)
T cd01075 25 SLEGKTVAVQGLGKVGYKLAEHLLEEGA-KLIVADIN 60 (200)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 4678899999999999999999999997 77788865
No 93
>PRK04148 hypothetical protein; Provisional
Probab=97.10 E-value=0.011 Score=46.11 Aligned_cols=98 Identities=11% Similarity=0.176 Sum_probs=72.1
Q ss_pred hcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 84 REFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 84 ~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
++.+|++|||| .|..+|..|++.|. +++-+|-+.- .++.+++. .+ ++...++
T Consensus 16 ~~~kileIG~G-fG~~vA~~L~~~G~-~ViaIDi~~~------------------aV~~a~~~------~~--~~v~dDl 67 (134)
T PRK04148 16 KNKKIVELGIG-FYFKVAKKLKESGF-DVIVIDINEK------------------AVEKAKKL------GL--NAFVDDL 67 (134)
T ss_pred cCCEEEEEEec-CCHHHHHHHHHCCC-EEEEEECCHH------------------HHHHHHHh------CC--eEEECcC
Confidence 45789999999 99999999999996 8888884433 33333332 22 3444555
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
.+. ++ ...+++|+|..+--..+....|.+.+++.+.+++-.-.+|.
T Consensus 68 f~p-~~---------------~~y~~a~liysirpp~el~~~~~~la~~~~~~~~i~~l~~e 113 (134)
T PRK04148 68 FNP-NL---------------EIYKNAKLIYSIRPPRDLQPFILELAKKINVPLIIKPLSGE 113 (134)
T ss_pred CCC-CH---------------HHHhcCCEEEEeCCCHHHHHHHHHHHHHcCCCEEEEcCCCC
Confidence 431 11 24579999999999999999999999999999887666553
No 94
>PF00056 Ldh_1_N: lactate/malate dehydrogenase, NAD binding domain Prosite entry for lactate dehydrogenase Prosite entry for malate dehydrogenase; InterPro: IPR001236 L-lactate dehydrogenases are metabolic enzymes which catalyse the conversion of L-lactate to pyruvate, the last step in anaerobic glycolysis []. L-lactate dehydrogenase is also found as a lens crystallin in bird and crocodile eyes. L-2-hydroxyisocaproate dehydrogenases are also members of the family. Malate dehydrogenases catalyse the interconversion of malate to oxaloacetate []. The enzyme participates in the citric acid cycle. This entry represents the N-terminal, and is thought to be a Rossmann NAD-binding fold.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1IB6_B 3HHP_C 1IE3_A 2PWZ_A 1EMD_A 2CMD_A 1EZ4_D 9LDT_B 9LDB_B 2D4A_C ....
Probab=97.05 E-value=0.003 Score=49.63 Aligned_cols=75 Identities=23% Similarity=0.391 Sum_probs=52.9
Q ss_pred CcEEEEec-CchHHHHHHHHHHhcC-ceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCc--EEEEEee
Q 026893 86 FSVAIVGV-GGVGSVAAEMLTRCGI-GRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDV--VLESFTL 161 (231)
Q Consensus 86 ~~V~IvG~-GgvGs~ia~~La~~Gv-~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v--~v~~~~~ 161 (231)
.||+|||+ |.+|+.++..|+..|+ .+|+|+|.+.= |++..+.-|....+.. .+....
T Consensus 1 ~KV~IiGa~G~VG~~~a~~l~~~~l~~ei~L~D~~~~------------------~~~g~a~Dl~~~~~~~~~~~~i~~- 61 (141)
T PF00056_consen 1 MKVAIIGAAGNVGSTLALLLAQQGLADEIVLIDINED------------------KAEGEALDLSHASAPLPSPVRITS- 61 (141)
T ss_dssp SEEEEESTTSHHHHHHHHHHHHTTTSSEEEEEESSHH------------------HHHHHHHHHHHHHHGSTEEEEEEE-
T ss_pred CEEEEECCCChHHHHHHHHHHhCCCCCceEEeccCcc------------------cceeeehhhhhhhhhccccccccc-
Confidence 37999999 9999999999999998 56999995432 6666666676664333 222222
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDN 199 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~ 199 (231)
.+ . ..++++|+||.+...
T Consensus 62 --~~---~---------------~~~~~aDivvitag~ 79 (141)
T PF00056_consen 62 --GD---Y---------------EALKDADIVVITAGV 79 (141)
T ss_dssp --SS---G---------------GGGTTESEEEETTST
T ss_pred --cc---c---------------cccccccEEEEeccc
Confidence 11 1 245799999988754
No 95
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=97.02 E-value=0.0042 Score=48.87 Aligned_cols=89 Identities=16% Similarity=0.287 Sum_probs=66.3
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
+.|+|+| +||+|.++++.|++.|..++.+++.+ . -..+.+.+.+.+.. ++.++.....++.
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r~----~------------~~~~~~~l~~~l~~--~~~~~~~~~~D~~ 62 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSRS----E------------DSEGAQELIQELKA--PGAKITFIECDLS 62 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEESS----C------------HHHHHHHHHHHHHH--TTSEEEEEESETT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeeec----c------------cccccccccccccc--ccccccccccccc
Confidence 4678887 88999999999999999999998866 0 01245555566664 4477778888888
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccCC
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDN 199 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~ 199 (231)
+.+.+..+++.+... ..+.|++|.|..-
T Consensus 63 ~~~~~~~~~~~~~~~-------~~~ld~li~~ag~ 90 (167)
T PF00106_consen 63 DPESIRALIEEVIKR-------FGPLDILINNAGI 90 (167)
T ss_dssp SHHHHHHHHHHHHHH-------HSSESEEEEECSC
T ss_pred ccccccccccccccc-------ccccccccccccc
Confidence 888888887766532 2589999988653
No 96
>PRK07831 short chain dehydrogenase; Provisional
Probab=97.02 E-value=0.006 Score=51.90 Aligned_cols=91 Identities=14% Similarity=0.211 Sum_probs=60.4
Q ss_pred HHhcCcEEEEec-C-chHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 82 RIREFSVAIVGV-G-GVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 82 kl~~~~V~IvG~-G-gvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
.+.+++++|.|. | |+|..+++.|+..|.. +.++|.+. .+.+...+.+.+..+..++..+
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~-V~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~ 74 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGAR-VVISDIHE------------------RRLGETADELAAELGLGRVEAV 74 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCE-EEEEeCCH------------------HHHHHHHHHHHHhcCCceEEEE
Confidence 344678999996 6 8999999999999974 77765321 2344445555553344456677
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
..++++.+.++.+++.+... +...|+||.|..
T Consensus 75 ~~Dl~~~~~~~~~~~~~~~~-------~g~id~li~~ag 106 (262)
T PRK07831 75 VCDVTSEAQVDALIDAAVER-------LGRLDVLVNNAG 106 (262)
T ss_pred EccCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 77777766777666544322 246788888764
No 97
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=97.01 E-value=0.003 Score=56.29 Aligned_cols=50 Identities=32% Similarity=0.453 Sum_probs=40.1
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCc-eEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCC
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIG-RLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINP 152 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~-~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np 152 (231)
..||+|||+|.+|+.++..|+..|+. +|.|+|-+ ..|++..+.-|....|
T Consensus 6 ~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~~------------------~~~~~g~~~Dl~~~~~ 56 (315)
T PRK00066 6 HNKVVLVGDGAVGSSYAYALVNQGIADELVIIDIN------------------KEKAEGDAMDLSHAVP 56 (315)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC------------------CchhHHHHHHHHhhcc
Confidence 56999999999999999999999985 89999953 2256666666776654
No 98
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=96.98 E-value=0.0067 Score=45.24 Aligned_cols=86 Identities=24% Similarity=0.278 Sum_probs=61.6
Q ss_pred EEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccCcc
Q 026893 88 VAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQ 167 (231)
Q Consensus 88 V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~ 167 (231)
|+|+|+|.+|..+++.|.. +--+++++|.|.- ++ +.+.+.. +. .+..+.++.+
T Consensus 1 vvI~G~g~~~~~i~~~L~~-~~~~vvvid~d~~------------------~~----~~~~~~~--~~--~i~gd~~~~~ 53 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKE-GGIDVVVIDRDPE------------------RV----EELREEG--VE--VIYGDATDPE 53 (116)
T ss_dssp EEEES-SHHHHHHHHHHHH-TTSEEEEEESSHH------------------HH----HHHHHTT--SE--EEES-TTSHH
T ss_pred eEEEcCCHHHHHHHHHHHh-CCCEEEEEECCcH------------------HH----HHHHhcc--cc--cccccchhhh
Confidence 6899999999999999999 4468999997754 22 2333322 33 5556666544
Q ss_pred chHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHc
Q 026893 168 GFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNEL 213 (231)
Q Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~ 213 (231)
.+.. ..+..++.|+.++++......+...+++.
T Consensus 54 ~l~~-------------a~i~~a~~vv~~~~~d~~n~~~~~~~r~~ 86 (116)
T PF02254_consen 54 VLER-------------AGIEKADAVVILTDDDEENLLIALLAREL 86 (116)
T ss_dssp HHHH-------------TTGGCESEEEEESSSHHHHHHHHHHHHHH
T ss_pred HHhh-------------cCccccCEEEEccCCHHHHHHHHHHHHHH
Confidence 4443 34678999999999998888888888874
No 99
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.96 E-value=0.0051 Score=51.55 Aligned_cols=87 Identities=10% Similarity=0.182 Sum_probs=58.5
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++|+|+| .|++|.++++.|+..|.. +++++.+.- +.+.+...+.. ...+..+..
T Consensus 3 ~~~~~vlItGasg~iG~~l~~~l~~~G~~-V~~~~r~~~------------------~~~~~~~~~~~---~~~~~~~~~ 60 (251)
T PRK07231 3 LEGKVAIVTGASSGIGEGIARRFAAEGAR-VVVTDRNEE------------------AAERVAAEILA---GGRAIAVAA 60 (251)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCCE-EEEEeCCHH------------------HHHHHHHHHhc---CCeEEEEEC
Confidence 5678999998 589999999999999975 888775532 33333333433 334566777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+.++.++..+... +..+|+||.+..
T Consensus 61 D~~~~~~~~~~~~~~~~~-------~~~~d~vi~~ag 90 (251)
T PRK07231 61 DVSDEADVEAAVAAALER-------FGSVDILVNNAG 90 (251)
T ss_pred CCCCHHHHHHHHHHHHHH-------hCCCCEEEECCC
Confidence 777777776665543221 246788887763
No 100
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=96.96 E-value=0.0071 Score=51.18 Aligned_cols=89 Identities=18% Similarity=0.316 Sum_probs=61.2
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
.+.+++|+|.| .|++|..+++.|+..|. ++.+.|.+.- +.+.+.+.+... +.++..+.
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~i~~~--~~~~~~~~ 65 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGA-EVILNGRDPA------------------KLAAAAESLKGQ--GLSAHALA 65 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCC-EEEEEeCCHH------------------HHHHHHHHHHhc--CceEEEEE
Confidence 36678999998 59999999999999997 6777765421 334444455443 34556777
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.++.+.+.++.++..+.. .+...|+||.+..
T Consensus 66 ~D~~~~~~~~~~~~~~~~-------~~~~~d~li~~ag 96 (255)
T PRK07523 66 FDVTDHDAVRAAIDAFEA-------EIGPIDILVNNAG 96 (255)
T ss_pred ccCCCHHHHHHHHHHHHH-------hcCCCCEEEECCC
Confidence 788877777776654432 2357888888764
No 101
>PF01118 Semialdhyde_dh: Semialdehyde dehydrogenase, NAD binding domain; InterPro: IPR000534 The semialdehyde dehydrogenase family is found in N-acetyl-glutamine semialdehyde dehydrogenase (AgrC), which is involved in arginine biosynthesis, and aspartate-semialdehyde dehydrogenase [], an enzyme involved in the biosynthesis of various amino acids from aspartate. This family is also found in yeast and fungal Arg5,6 protein, which is cleaved into the enzymes N-acety-gamma-glutamyl-phosphate reductase and acetylglutamate kinase. These are also involved in arginine biosynthesis. All proteins in this entry contain a NAD binding region of semialdehyde dehydrogenase.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 3Q0E_B 1MB4_A 3PZR_A 1MC4_A 3TZ6_A 3VOS_A 2CVO_B 2R00_C 2QZ9_A 2EP5_C ....
Probab=96.95 E-value=0.0041 Score=47.36 Aligned_cols=97 Identities=19% Similarity=0.103 Sum_probs=56.7
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEE-EeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLL-YDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~L-iD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
||+||| .|-+|+++++.|....--++.. +.... ..|+.=.+... .......+.... .
T Consensus 1 rV~IvGAtG~vG~~l~~lL~~hp~~e~~~~~~~~~--------------~~g~~~~~~~~----~~~~~~~~~~~~--~- 59 (121)
T PF01118_consen 1 RVAIVGATGYVGRELLRLLAEHPDFELVALVSSSR--------------SAGKPLSEVFP----HPKGFEDLSVED--A- 59 (121)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTEEEEEEEESTT--------------TTTSBHHHTTG----GGTTTEEEBEEE--T-
T ss_pred CEEEECCCCHHHHHHHHHHhcCCCccEEEeeeecc--------------ccCCeeehhcc----ccccccceeEee--c-
Confidence 689999 9999999999999965444333 33222 23432211111 111111221211 1
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCcc
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQ 223 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~ 223 (231)
..+ .+.++|+||.|+++...+.....+ .+.|+++||....
T Consensus 60 ---~~~---------------~~~~~Dvvf~a~~~~~~~~~~~~~-~~~g~~ViD~s~~ 99 (121)
T PF01118_consen 60 ---DPE---------------ELSDVDVVFLALPHGASKELAPKL-LKAGIKVIDLSGD 99 (121)
T ss_dssp ---SGH---------------HHTTESEEEE-SCHHHHHHHHHHH-HHTTSEEEESSST
T ss_pred ---chh---------------HhhcCCEEEecCchhHHHHHHHHH-hhCCcEEEeCCHH
Confidence 111 236899999999987776555544 7889999987653
No 102
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=96.94 E-value=0.0031 Score=55.56 Aligned_cols=119 Identities=16% Similarity=0.216 Sum_probs=70.9
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHh-hCCCcEEEEEeecccC
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLAD-INPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~-~np~v~v~~~~~~i~~ 165 (231)
+|.|||+|..|+.++.+|++.|. ++.++|.+.-...-+... |...+....+.... -.+++.+-..+..
T Consensus 2 ~Ig~IGlG~mG~~la~~L~~~g~-~V~~~dr~~~~~~~l~~~-------g~~~~~s~~~~~~~~~~~dvIi~~vp~~--- 70 (298)
T TIGR00872 2 QLGLIGLGRMGANIVRRLAKRGH-DCVGYDHDQDAVKAMKED-------RTTGVANLRELSQRLSAPRVVWVMVPHG--- 70 (298)
T ss_pred EEEEEcchHHHHHHHHHHHHCCC-EEEEEECCHHHHHHHHHc-------CCcccCCHHHHHhhcCCCCEEEEEcCch---
Confidence 69999999999999999999995 677888764321111111 11111111111111 1356665555543
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCH-HHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNY-EARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~-~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
..+..++.+.. .+.+=++||+|.... ..-..+.+.+.+.|++|++++++|.
T Consensus 71 --~~~~v~~~l~~-------~l~~g~ivid~st~~~~~t~~~~~~~~~~g~~~vda~vsGg 122 (298)
T TIGR00872 71 --IVDAVLEELAP-------TLEKGDIVIDGGNSYYKDSLRRYKLLKEKGIHLLDCGTSGG 122 (298)
T ss_pred --HHHHHHHHHHh-------hCCCCCEEEECCCCCcccHHHHHHHHHhcCCeEEecCCCCC
Confidence 22333333221 233447899986653 4445666778889999999999863
No 103
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=96.93 E-value=0.0036 Score=57.95 Aligned_cols=94 Identities=18% Similarity=0.220 Sum_probs=60.0
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
+++++|+|+|.|++|..+|..|+..|. +++++|.+.-+ ..+...+.+.+. +++ .+..+
T Consensus 3 ~~~k~v~iiG~g~~G~~~A~~l~~~G~-~V~~~d~~~~~-----------------~~~~~~~~l~~~--~~~--~~~~~ 60 (450)
T PRK14106 3 LKGKKVLVVGAGVSGLALAKFLKKLGA-KVILTDEKEED-----------------QLKEALEELGEL--GIE--LVLGE 60 (450)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCchH-----------------HHHHHHHHHHhc--CCE--EEeCC
Confidence 567899999999999999999999996 79998865410 112222334333 233 33322
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEE
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWM 218 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i 218 (231)
..+ ....++|+||.++..... ..+...|++.|+|++
T Consensus 61 ~~~-------------------~~~~~~d~vv~~~g~~~~-~~~~~~a~~~~i~~~ 96 (450)
T PRK14106 61 YPE-------------------EFLEGVDLVVVSPGVPLD-SPPVVQAHKKGIEVI 96 (450)
T ss_pred cch-------------------hHhhcCCEEEECCCCCCC-CHHHHHHHHCCCcEE
Confidence 221 123579999998875433 335666677777764
No 104
>TIGR00873 gnd 6-phosphogluconate dehydrogenase, decarboxylating. This model does not specify whether the cofactor is NADP only (EC 1.1.1.44), NAD only, or both. The model does not assign an EC number for that reason.
Probab=96.91 E-value=0.0086 Score=56.20 Aligned_cols=125 Identities=10% Similarity=0.142 Sum_probs=73.8
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhh-CCCcEEEEEeecccC
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADI-NPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~-np~v~v~~~~~~i~~ 165 (231)
.|.|||+|..|+.+|.+|++.|. +++++|.+.-....+.... ... .+-.-+..+++....+ .|++.+...+..
T Consensus 1 ~IG~IGLG~MG~~mA~nL~~~G~-~V~v~drt~~~~~~l~~~~-~~g-~~~~~~~s~~e~v~~l~~~dvIil~v~~~--- 74 (467)
T TIGR00873 1 DIGVIGLAVMGSNLALNMADHGF-TVSVYNRTPEKTDEFLAEH-AKG-KKIVGAYSIEEFVQSLERPRKIMLMVKAG--- 74 (467)
T ss_pred CEEEEeeHHHHHHHHHHHHhcCC-eEEEEeCCHHHHHHHHhhc-cCC-CCceecCCHHHHHhhcCCCCEEEEECCCc---
Confidence 37899999999999999999997 7888887553322221110 000 0000111223333332 366655454431
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccC-CHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD-NYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D-~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
...+..++.+.. .+..=|+|||+.. .+..-....+.+.+.|+.|++++++|-
T Consensus 75 -~~v~~Vi~~l~~-------~L~~g~iIID~gns~~~~t~~~~~~l~~~gi~fvdapVsGG 127 (467)
T TIGR00873 75 -APVDAVINQLLP-------LLEKGDIIIDGGNSHYPDTERRYKELKAKGILFVGSGVSGG 127 (467)
T ss_pred -HHHHHHHHHHHh-------hCCCCCEEEECCCcCHHHHHHHHHHHHhcCCEEEcCCCCCC
Confidence 223333333221 2345689999986 444444556778899999999999984
No 105
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.90 E-value=0.0041 Score=55.19 Aligned_cols=48 Identities=17% Similarity=0.351 Sum_probs=37.6
Q ss_pred cEEEEecCchHHHHHHHHHHhcC-ceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCC
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGI-GRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINP 152 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv-~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np 152 (231)
||.|||+|.+|+.+|..|+..|+ ++|.|+|-. +.|++..+.-|+...+
T Consensus 1 Ki~IIGaG~VG~~~a~~l~~~~~~~elvL~Di~------------------~~~a~g~a~DL~~~~~ 49 (307)
T cd05290 1 KLVVIGAGHVGSAVLNYALALGLFSEIVLIDVN------------------EGVAEGEALDFHHATA 49 (307)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCC------------------cchhhHHHHHHHhhhc
Confidence 68999999999999999999888 689999942 2356666666666543
No 106
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.89 E-value=0.0083 Score=50.27 Aligned_cols=88 Identities=19% Similarity=0.345 Sum_probs=57.1
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|+|+ ||+|..+++.|+..|. ++.++|.+.- |.+.+.+.+....+ ++..+..
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~-~vi~~~r~~~------------------~~~~~~~~~~~~~~--~~~~~~~ 61 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGA-KLALIDLNQE------------------KLEEAVAECGALGT--EVRGYAA 61 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHHHHhcCC--ceEEEEc
Confidence 56788999996 9999999999999997 6888875431 44444455544433 3445666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+.+..+++.+... ....|+||.+..
T Consensus 62 D~~~~~~~~~~~~~~~~~-------~~~id~vi~~ag 91 (253)
T PRK08217 62 NVTDEEDVEATFAQIAED-------FGQLNGLINNAG 91 (253)
T ss_pred CCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 666655665555443221 246788877653
No 107
>PRK05875 short chain dehydrogenase; Provisional
Probab=96.87 E-value=0.0088 Score=51.21 Aligned_cols=90 Identities=13% Similarity=0.190 Sum_probs=58.1
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.|+ |++|+++++.|+..|. ++.+++.+.- +.+...+.+.......++..+..
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~l~~~~~~~~~~~~~~ 65 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGA-AVMIVGRNPD------------------KLAAAAEEIEALKGAGAVRYEPA 65 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEeCCHH------------------HHHHHHHHHHhccCCCceEEEEc
Confidence 56789999995 8999999999999998 6888775421 33333344444332345556667
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+.+...++.+.+. +..+|+||.+..
T Consensus 66 Dl~~~~~~~~~~~~~~~~-------~~~~d~li~~ag 95 (276)
T PRK05875 66 DVTDEDQVARAVDAATAW-------HGRLHGVVHCAG 95 (276)
T ss_pred CCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 777666665554433221 246788887653
No 108
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=96.86 E-value=0.0084 Score=50.36 Aligned_cols=85 Identities=13% Similarity=0.228 Sum_probs=57.9
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++|+|.|+ ||+|..+++.|+..|. ++.+++... .+.+.+.+.+.. .++..+..
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~vi~~~r~~--------------------~~~~~~~~~~~~--~~~~~~~~ 59 (248)
T TIGR01832 3 LEGKVALVTGANTGLGQGIAVGLAEAGA-DIVGAGRSE--------------------PSETQQQVEALG--RRFLSLTA 59 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCch--------------------HHHHHHHHHhcC--CceEEEEC
Confidence 56789999995 7999999999999997 677766321 122334444443 34557777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..+++.+... ..++|+||.+.
T Consensus 60 D~~~~~~~~~~~~~~~~~-------~~~~d~li~~a 88 (248)
T TIGR01832 60 DLSDIEAIKALVDSAVEE-------FGHIDILVNNA 88 (248)
T ss_pred CCCCHHHHHHHHHHHHHH-------cCCCCEEEECC
Confidence 888777777776554322 24688888775
No 109
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=96.86 E-value=0.0098 Score=57.72 Aligned_cols=89 Identities=16% Similarity=0.312 Sum_probs=67.6
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
..+|+|+|+|-+|..+++.|.+.|+ +++++|.|.- +++.+++ .+.. .+..+.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~------------------~v~~~~~------~g~~--v~~GDat 452 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGV-KMTVLDHDPD------------------HIETLRK------FGMK--VFYGDAT 452 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCC-CEEEEECCHH------------------HHHHHHh------cCCe--EEEEeCC
Confidence 4789999999999999999999997 7889998765 4444432 2333 4555666
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHc
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNEL 213 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~ 213 (231)
+.+-++. ..+++++.||.|+|+.+....+...++++
T Consensus 453 ~~~~L~~-------------agi~~A~~vvv~~~d~~~n~~i~~~ar~~ 488 (621)
T PRK03562 453 RMDLLES-------------AGAAKAEVLINAIDDPQTSLQLVELVKEH 488 (621)
T ss_pred CHHHHHh-------------cCCCcCCEEEEEeCCHHHHHHHHHHHHHh
Confidence 5443332 35679999999999999988888888876
No 110
>PRK05867 short chain dehydrogenase; Provisional
Probab=96.85 E-value=0.0071 Score=51.19 Aligned_cols=87 Identities=10% Similarity=0.198 Sum_probs=59.2
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.|+ ||+|.++++.|++.|. ++.+++.+. .+.+.+.+.+.... .++..+..
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~~--~~~~~~~~ 65 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGA-QVAIAARHL------------------DALEKLADEIGTSG--GKVVPVCC 65 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEcCCH------------------HHHHHHHHHHHhcC--CeEEEEEc
Confidence 56788999985 8999999999999997 577765431 14445555555443 34556777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..+++.+... +...|++|.|.
T Consensus 66 D~~~~~~~~~~~~~~~~~-------~g~id~lv~~a 94 (253)
T PRK05867 66 DVSQHQQVTSMLDQVTAE-------LGGIDIAVCNA 94 (253)
T ss_pred cCCCHHHHHHHHHHHHHH-------hCCCCEEEECC
Confidence 777777777766554322 24688888764
No 111
>PRK12384 sorbitol-6-phosphate dehydrogenase; Provisional
Probab=96.83 E-value=0.012 Score=49.73 Aligned_cols=87 Identities=16% Similarity=0.170 Sum_probs=58.4
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
+++|+|.| .|++|.++++.|+..|. ++.++|.+.- +.+.+.+.+...++...++.+..++
T Consensus 2 ~k~ilItG~~~~IG~~la~~l~~~g~-~vi~~~r~~~------------------~~~~~~~~~~~~~~~~~~~~~~~D~ 62 (259)
T PRK12384 2 NQVAVVIGGGQTLGAFLCHGLAEEGY-RVAVADINSE------------------KAANVAQEINAEYGEGMAYGFGADA 62 (259)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEECCHH------------------HHHHHHHHHHHhcCCceeEEEEccC
Confidence 45788887 57999999999999986 7888875421 3334444555544334566777778
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++.+.+..+++.+.. .+...|+||.+.
T Consensus 63 ~~~~~i~~~~~~~~~-------~~~~id~vv~~a 89 (259)
T PRK12384 63 TSEQSVLALSRGVDE-------IFGRVDLLVYNA 89 (259)
T ss_pred CCHHHHHHHHHHHHH-------HcCCCCEEEECC
Confidence 776666666554432 235788888875
No 112
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=96.83 E-value=0.0038 Score=51.08 Aligned_cols=34 Identities=32% Similarity=0.596 Sum_probs=28.4
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVE 121 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~ 121 (231)
+|+|||+|..|+.+|..+++.|. +++|+|.+.-.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~~ 34 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGY-EVTLYDRSPEA 34 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTS-EEEEE-SSHHH
T ss_pred CEEEEcCCHHHHHHHHHHHhCCC-cEEEEECChHH
Confidence 68999999999999999999995 99999976543
No 113
>PRK06194 hypothetical protein; Provisional
Probab=96.82 E-value=0.01 Score=51.13 Aligned_cols=88 Identities=18% Similarity=0.239 Sum_probs=57.0
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++|+|.| .||+|+++++.|++.|. +++++|.+.- +.+...+.+... ..++..+..
T Consensus 4 ~~~k~vlVtGasggIG~~la~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~~~~~--~~~~~~~~~ 62 (287)
T PRK06194 4 FAGKVAVITGAASGFGLAFARIGAALGM-KLVLADVQQD------------------ALDRAVAELRAQ--GAEVLGVRT 62 (287)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHCCC-EEEEEeCChH------------------HHHHHHHHHHhc--CCeEEEEEC
Confidence 4467899997 68999999999999997 6888775321 222233333332 345667777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.++.+++.+... +.++|+||.+..
T Consensus 63 D~~d~~~~~~~~~~~~~~-------~g~id~vi~~Ag 92 (287)
T PRK06194 63 DVSDAAQVEALADAALER-------FGAVHLLFNNAG 92 (287)
T ss_pred CCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 787766666655443222 246788887753
No 114
>PRK08339 short chain dehydrogenase; Provisional
Probab=96.79 E-value=0.011 Score=50.55 Aligned_cols=87 Identities=16% Similarity=0.230 Sum_probs=60.3
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
++++.++|.|+ ||+|..+++.|++.|. ++.++|.+.- +.+.+++.+.+.. ..++..+..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~~~~~~-~~~~~~~~~ 65 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGA-DVILLSRNEE------------------NLKKAREKIKSES-NVDVSYIVA 65 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHHHHhhc-CCceEEEEe
Confidence 56778899985 7999999999999997 6878775421 4444555554432 334557778
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.++.+++.+.. +...|++|.+.
T Consensus 66 Dv~~~~~i~~~~~~~~~--------~g~iD~lv~na 93 (263)
T PRK08339 66 DLTKREDLERTVKELKN--------IGEPDIFFFST 93 (263)
T ss_pred cCCCHHHHHHHHHHHHh--------hCCCcEEEECC
Confidence 88887777777765431 24678888775
No 115
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=96.78 E-value=0.0089 Score=50.68 Aligned_cols=90 Identities=16% Similarity=0.219 Sum_probs=61.0
Q ss_pred HHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 81 ERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 81 ~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
.++++++++|.| .|++|+.+++.|+..|. ++++++.+. .+.+.+...+...+ .++..+
T Consensus 8 ~~~~~k~ilItGa~g~IG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~i~~~~--~~~~~~ 66 (259)
T PRK08213 8 FDLSGKTALVTGGSRGLGLQIAEALGEAGA-RVVLSARKA------------------EELEEAAAHLEALG--IDALWI 66 (259)
T ss_pred hCcCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CeEEEE
Confidence 346788999998 69999999999999998 677776432 13344444454432 344567
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
..++++.+.++.++..+... +.+.|.||.|..
T Consensus 67 ~~Dl~d~~~i~~~~~~~~~~-------~~~id~vi~~ag 98 (259)
T PRK08213 67 AADVADEADIERLAEETLER-------FGHVDILVNNAG 98 (259)
T ss_pred EccCCCHHHHHHHHHHHHHH-------hCCCCEEEECCC
Confidence 77888777777666554332 246788887753
No 116
>PRK06949 short chain dehydrogenase; Provisional
Probab=96.76 E-value=0.012 Score=49.68 Aligned_cols=88 Identities=14% Similarity=0.260 Sum_probs=58.6
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++|+|.| .|++|..+++.|++.|. ++++++.+.- +.+.+...+..... ++..+..
T Consensus 7 ~~~k~ilItGasg~IG~~~a~~l~~~G~-~Vi~~~r~~~------------------~~~~~~~~l~~~~~--~~~~~~~ 65 (258)
T PRK06949 7 LEGKVALVTGASSGLGARFAQVLAQAGA-KVVLASRRVE------------------RLKELRAEIEAEGG--AAHVVSL 65 (258)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHHHHhcCC--cEEEEEe
Confidence 5678999998 59999999999999998 5777654321 44444455544433 3456666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+..++..+.. ...++|+||.|..
T Consensus 66 D~~~~~~~~~~~~~~~~-------~~~~~d~li~~ag 95 (258)
T PRK06949 66 DVTDYQSIKAAVAHAET-------EAGTIDILVNNSG 95 (258)
T ss_pred cCCCHHHHHHHHHHHHH-------hcCCCCEEEECCC
Confidence 77766666666554332 2357888888765
No 117
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.76 E-value=0.018 Score=53.10 Aligned_cols=98 Identities=20% Similarity=0.238 Sum_probs=66.9
Q ss_pred hcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 84 REFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 84 ~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
...+|+|+|+|.+|..+++.|...|. .++++|.|.= +++. +.+..+++. .+..+.
T Consensus 230 ~~~~iiIiG~G~~g~~l~~~L~~~~~-~v~vid~~~~------------------~~~~----~~~~~~~~~--~i~gd~ 284 (453)
T PRK09496 230 PVKRVMIVGGGNIGYYLAKLLEKEGY-SVKLIERDPE------------------RAEE----LAEELPNTL--VLHGDG 284 (453)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCHH------------------HHHH----HHHHCCCCe--EEECCC
Confidence 36889999999999999999999887 6888885532 2222 333234443 344444
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEE
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWME 219 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~ 219 (231)
++.+.+.. ..+.++|.|+.++++......+...|++.+.+.+-
T Consensus 285 ~~~~~L~~-------------~~~~~a~~vi~~~~~~~~n~~~~~~~~~~~~~~ii 327 (453)
T PRK09496 285 TDQELLEE-------------EGIDEADAFIALTNDDEANILSSLLAKRLGAKKVI 327 (453)
T ss_pred CCHHHHHh-------------cCCccCCEEEECCCCcHHHHHHHHHHHHhCCCeEE
Confidence 44333322 25678999999998877777777788888765443
No 118
>PRK07478 short chain dehydrogenase; Provisional
Probab=96.74 E-value=0.012 Score=49.81 Aligned_cols=88 Identities=14% Similarity=0.225 Sum_probs=59.9
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.| .||+|.++++.|++.|. ++.+++.+. .+.+.+.+.+..... ++..+..
T Consensus 4 ~~~k~~lItGas~giG~~ia~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~~ 62 (254)
T PRK07478 4 LNGKVAIITGASSGIGRAAAKLFAREGA-KVVVGARRQ------------------AELDQLVAEIRAEGG--EAVALAG 62 (254)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--cEEEEEc
Confidence 4567899998 57999999999999998 577766432 245555666665543 4456777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+....+++.+... +...|++|.+..
T Consensus 63 D~~~~~~~~~~~~~~~~~-------~~~id~li~~ag 92 (254)
T PRK07478 63 DVRDEAYAKALVALAVER-------FGGLDIAFNNAG 92 (254)
T ss_pred CCCCHHHHHHHHHHHHHh-------cCCCCEEEECCC
Confidence 777777766666544322 246888887653
No 119
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=96.74 E-value=0.0037 Score=51.38 Aligned_cols=84 Identities=20% Similarity=0.245 Sum_probs=54.2
Q ss_pred HHhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
.+++++++|+|. |++|..++..|++.| .++++++.+. .|++.+.+.+.+.. ...+...
T Consensus 25 ~l~~~~vlVlGgtG~iG~~~a~~l~~~g-~~V~l~~R~~------------------~~~~~l~~~l~~~~-~~~~~~~- 83 (194)
T cd01078 25 DLKGKTAVVLGGTGPVGQRAAVLLAREG-ARVVLVGRDL------------------ERAQKAADSLRARF-GEGVGAV- 83 (194)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCC-CEEEEEcCCH------------------HHHHHHHHHHHhhc-CCcEEEe-
Confidence 456789999995 999999999999988 4888887542 26666666665332 3333222
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHH
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYE 201 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~ 201 (231)
...+.++... .+.++|+||.|+....
T Consensus 84 -~~~~~~~~~~--------------~~~~~diVi~at~~g~ 109 (194)
T cd01078 84 -ETSDDAARAA--------------AIKGADVVFAAGAAGV 109 (194)
T ss_pred -eCCCHHHHHH--------------HHhcCCEEEECCCCCc
Confidence 2222222221 2357899999886554
No 120
>PRK09186 flagellin modification protein A; Provisional
Probab=96.73 E-value=0.013 Score=49.31 Aligned_cols=89 Identities=21% Similarity=0.325 Sum_probs=57.3
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++|+|.| .||+|.++++.|++.|. ++++++.+. .+.+.+.+.+....+.-.+.....
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~-~v~~~~r~~------------------~~~~~~~~~l~~~~~~~~~~~~~~ 62 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGG-IVIAADIDK------------------EALNELLESLGKEFKSKKLSLVEL 62 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecCh------------------HHHHHHHHHHHhhcCCCceeEEEe
Confidence 3567899998 58999999999999997 466654321 244445555543333333445566
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..+++.+.. .+.+.|+||.|.
T Consensus 63 Dl~d~~~~~~~~~~~~~-------~~~~id~vi~~A 91 (256)
T PRK09186 63 DITDQESLEEFLSKSAE-------KYGKIDGAVNCA 91 (256)
T ss_pred cCCCHHHHHHHHHHHHH-------HcCCccEEEECC
Confidence 77776777766655432 234689988775
No 121
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=96.71 E-value=0.0017 Score=55.09 Aligned_cols=38 Identities=26% Similarity=0.480 Sum_probs=35.6
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCc--eEEEEeCCc
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIG--RLLLYDYDK 119 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~--~i~LiD~D~ 119 (231)
.+++.+|+|+|+|+.|..++..|+..|++ +|.++|.+-
T Consensus 22 ~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~g 61 (226)
T cd05311 22 KIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKG 61 (226)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCC
Confidence 57789999999999999999999999999 999999984
No 122
>PRK12939 short chain dehydrogenase; Provisional
Probab=96.71 E-value=0.013 Score=49.02 Aligned_cols=88 Identities=14% Similarity=0.208 Sum_probs=59.3
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++|.| .|++|..+++.|++.|. ++.+++.+. .+.+.+.+.+.... .++..+..
T Consensus 5 ~~~~~vlItGa~g~iG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~ 63 (250)
T PRK12939 5 LAGKRALVTGAARGLGAAFAEALAEAGA-TVAFNDGLA------------------AEARELAAALEAAG--GRAHAIAA 63 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CcEEEEEc
Confidence 4568899998 58999999999999997 466655332 24444455555443 34557777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+..+++.+... +.++|+||.|..
T Consensus 64 Dl~~~~~~~~~~~~~~~~-------~~~id~vi~~ag 93 (250)
T PRK12939 64 DLADPASVQRFFDAAAAA-------LGGLDGLVNNAG 93 (250)
T ss_pred cCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 888777777666543322 257899988864
No 123
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=96.70 E-value=0.009 Score=52.59 Aligned_cols=120 Identities=17% Similarity=0.285 Sum_probs=71.0
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhh-CCCcEEEEEeecccC
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADI-NPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~-np~v~v~~~~~~i~~ 165 (231)
+|.+||+|-.|+.++.+|.+.|. +++++|.+.-...- + ...|...+.-..+...+. .+++.+.+.+..
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~-~v~v~dr~~~~~~~-----~--~~~g~~~~~s~~~~~~~~~~advVi~~vp~~--- 70 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGH-EVVGYDVNQEAVDV-----A--GKLGITARHSLEELVSKLEAPRTIWVMVPAG--- 70 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHHHHHH-----H--HHCCCeecCCHHHHHHhCCCCCEEEEEecCc---
Confidence 68999999999999999999986 68888865321110 1 012222222222223222 245665555532
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccC-CHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD-NYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D-~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
+.....++.+. ..+.+=.+||+|+. +...-..+.+.+.+.++.|+|+.++|.
T Consensus 71 -~~~~~v~~~i~-------~~l~~g~ivid~st~~~~~~~~~~~~~~~~g~~~vdapV~G~ 123 (299)
T PRK12490 71 -EVTESVIKDLY-------PLLSPGDIVVDGGNSRYKDDLRRAEELAERGIHYVDCGTSGG 123 (299)
T ss_pred -hHHHHHHHHHh-------ccCCCCCEEEECCCCCchhHHHHHHHHHHcCCeEEeCCCCCC
Confidence 12233322221 12334468888843 455556778888889999999888875
No 124
>PRK06138 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.015 Score=48.88 Aligned_cols=87 Identities=14% Similarity=0.252 Sum_probs=57.7
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.| .|++|+.+++.|+..|. ++.+++.+.- +.+...+.+. +..++..+..
T Consensus 3 ~~~k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~~------------------~~~~~~~~~~---~~~~~~~~~~ 60 (252)
T PRK06138 3 LAGRVAIVTGAGSGIGRATAKLFAREGA-RVVVADRDAE------------------AAERVAAAIA---AGGRAFARQG 60 (252)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCC-eEEEecCCHH------------------HHHHHHHHHh---cCCeEEEEEc
Confidence 4678899998 58999999999999986 5777664321 2222222222 3456667777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+...++.+... +.++|+||.|..
T Consensus 61 D~~~~~~~~~~~~~i~~~-------~~~id~vi~~ag 90 (252)
T PRK06138 61 DVGSAEAVEALVDFVAAR-------WGRLDVLVNNAG 90 (252)
T ss_pred CCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 888777776665544322 247888888764
No 125
>PF02719 Polysacc_synt_2: Polysaccharide biosynthesis protein; InterPro: IPR003869 This domain is found in diverse bacterial polysaccharide biosynthesis proteins including the CapD protein from Staphylococcus aureus [], the WalL protein, mannosyl-transferase [], and several putative epimerases. The CapD protein is required for biosynthesis of type 1 capsular polysaccharide.; GO: 0009058 biosynthetic process; PDB: 3PVZ_C 2GN8_B 2GN4_A 2GNA_B 2GN6_A 2GN9_A.
Probab=96.69 E-value=0.0031 Score=55.54 Aligned_cols=38 Identities=34% Similarity=0.576 Sum_probs=31.3
Q ss_pred EEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccc
Q 026893 88 VAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANM 125 (231)
Q Consensus 88 V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl 125 (231)
|+|.| +|++||++++.|++.+..+|+++|.|.-...++
T Consensus 1 VLVTGa~GSIGseL~rql~~~~p~~lil~d~~E~~l~~l 39 (293)
T PF02719_consen 1 VLVTGAGGSIGSELVRQLLRYGPKKLILFDRDENKLYEL 39 (293)
T ss_dssp EEEETTTSHHHHHHHHHHHCCB-SEEEEEES-HHHHHHH
T ss_pred CEEEccccHHHHHHHHHHHhcCCCeEEEeCCChhHHHHH
Confidence 67776 889999999999999999999999988755555
No 126
>PRK05866 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.013 Score=51.17 Aligned_cols=88 Identities=15% Similarity=0.312 Sum_probs=60.0
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
.+.+++|+|.| .||+|.++++.|+..|. ++.+++.+. .+.+.+.+.+... ...+..+.
T Consensus 37 ~~~~k~vlItGasggIG~~la~~La~~G~-~Vi~~~R~~------------------~~l~~~~~~l~~~--~~~~~~~~ 95 (293)
T PRK05866 37 DLTGKRILLTGASSGIGEAAAEQFARRGA-TVVAVARRE------------------DLLDAVADRITRA--GGDAMAVP 95 (293)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhc--CCcEEEEE
Confidence 34567899998 59999999999999996 677776432 1444455555543 33455677
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
.++++.+.+..+++.+... +.+.|+||.|.
T Consensus 96 ~Dl~d~~~v~~~~~~~~~~-------~g~id~li~~A 125 (293)
T PRK05866 96 CDLSDLDAVDALVADVEKR-------IGGVDILINNA 125 (293)
T ss_pred ccCCCHHHHHHHHHHHHHH-------cCCCCEEEECC
Confidence 7787777777666544322 35789999875
No 127
>PRK06139 short chain dehydrogenase; Provisional
Probab=96.69 E-value=0.0091 Score=53.34 Aligned_cols=89 Identities=20% Similarity=0.323 Sum_probs=62.0
Q ss_pred HHhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
.+.+++|+|.|+ ||+|.++++.|+..|. ++.+++.+.- +.+.+.+.+.+.. .++..+.
T Consensus 4 ~l~~k~vlITGAs~GIG~aia~~la~~G~-~Vvl~~R~~~------------------~l~~~~~~~~~~g--~~~~~~~ 62 (330)
T PRK06139 4 PLHGAVVVITGASSGIGQATAEAFARRGA-RLVLAARDEE------------------ALQAVAEECRALG--AEVLVVP 62 (330)
T ss_pred CCCCCEEEEcCCCCHHHHHHHHHHHHCCC-EEEEEECCHH------------------HHHHHHHHHHhcC--CcEEEEE
Confidence 356788999985 8999999999999997 5777764321 4444555555543 3455667
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.++++.+.++.+.+.+.+. +.++|++|.|..
T Consensus 63 ~Dv~d~~~v~~~~~~~~~~-------~g~iD~lVnnAG 93 (330)
T PRK06139 63 TDVTDADQVKALATQAASF-------GGRIDVWVNNVG 93 (330)
T ss_pred eeCCCHHHHHHHHHHHHHh-------cCCCCEEEECCC
Confidence 7888777777776654332 257899988764
No 128
>PTZ00117 malate dehydrogenase; Provisional
Probab=96.68 E-value=0.0059 Score=54.42 Aligned_cols=35 Identities=26% Similarity=0.584 Sum_probs=32.1
Q ss_pred hcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 84 REFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 84 ~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+..+|+|||+|.+|+.++..|+..|+.++.|+|-+
T Consensus 4 ~~~KI~IIGaG~vG~~ia~~l~~~~~~~l~L~Di~ 38 (319)
T PTZ00117 4 KRKKISMIGAGQIGSTVALLILQKNLGDVVLYDVI 38 (319)
T ss_pred CCcEEEEECCCHHHHHHHHHHHHCCCCeEEEEECC
Confidence 56799999999999999999999998899999965
No 129
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=96.67 E-value=0.014 Score=48.76 Aligned_cols=87 Identities=10% Similarity=0.185 Sum_probs=59.3
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++|+|.| +|++|..+++.|++.|. ++++++.+. .+...+.+.+...++. +..+..
T Consensus 4 ~~~~~ilItGasg~iG~~l~~~l~~~g~-~V~~~~r~~------------------~~~~~~~~~l~~~~~~--~~~~~~ 62 (251)
T PRK12826 4 LEGRVALVTGAARGIGRAIAVRLAADGA-EVIVVDICG------------------DDAAATAELVEAAGGK--ARARQV 62 (251)
T ss_pred CCCCEEEEcCCCCcHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCCe--EEEEEC
Confidence 4567899998 79999999999999997 677776553 1444445555554433 556667
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++.+.+.+..++..+.. .+.++|+||.|.
T Consensus 63 Dl~~~~~~~~~~~~~~~-------~~~~~d~vi~~a 91 (251)
T PRK12826 63 DVRDRAALKAAVAAGVE-------DFGRLDILVANA 91 (251)
T ss_pred CCCCHHHHHHHHHHHHH-------HhCCCCEEEECC
Confidence 77776666666544322 124788888886
No 130
>PRK06940 short chain dehydrogenase; Provisional
Probab=96.67 E-value=0.016 Score=49.94 Aligned_cols=84 Identities=19% Similarity=0.374 Sum_probs=57.6
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
++.++|.|+||+|.++++.|+ .|. ++.++|.+.- +.+.+.+.+... +.++..+..+++
T Consensus 2 ~k~~lItGa~gIG~~la~~l~-~G~-~Vv~~~r~~~------------------~~~~~~~~l~~~--~~~~~~~~~Dv~ 59 (275)
T PRK06940 2 KEVVVVIGAGGIGQAIARRVG-AGK-KVLLADYNEE------------------NLEAAAKTLREA--GFDVSTQEVDVS 59 (275)
T ss_pred CCEEEEECCChHHHHHHHHHh-CCC-EEEEEeCCHH------------------HHHHHHHHHHhc--CCeEEEEEeecC
Confidence 456788899999999999996 674 7888775421 334444445443 345667788888
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
+.+.+..+++.++. +...|++|.+..
T Consensus 60 d~~~i~~~~~~~~~--------~g~id~li~nAG 85 (275)
T PRK06940 60 SRESVKALAATAQT--------LGPVTGLVHTAG 85 (275)
T ss_pred CHHHHHHHHHHHHh--------cCCCCEEEECCC
Confidence 87777777665421 247899988764
No 131
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=96.65 E-value=0.003 Score=51.24 Aligned_cols=35 Identities=17% Similarity=0.247 Sum_probs=30.9
Q ss_pred HHhcCcEEEEecCch-HHHHHHHHHHhcCceEEEEeC
Q 026893 82 RIREFSVAIVGVGGV-GSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 82 kl~~~~V~IvG~Ggv-Gs~ia~~La~~Gv~~i~LiD~ 117 (231)
.|.+++|+|+|.|.+ |..++++|...|+ ++++++.
T Consensus 41 ~l~gk~vlViG~G~~~G~~~a~~L~~~g~-~V~v~~r 76 (168)
T cd01080 41 DLAGKKVVVVGRSNIVGKPLAALLLNRNA-TVTVCHS 76 (168)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHhhCCC-EEEEEEC
Confidence 478999999999985 8889999999998 6888874
No 132
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=96.64 E-value=0.0081 Score=53.11 Aligned_cols=33 Identities=33% Similarity=0.466 Sum_probs=28.9
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
..+|+|+|+|++|+.++-.|+++|. ++++++..
T Consensus 2 ~m~I~IiGaGaiG~~~a~~L~~~G~-~V~lv~r~ 34 (305)
T PRK05708 2 SMTWHILGAGSLGSLWACRLARAGL-PVRLILRD 34 (305)
T ss_pred CceEEEECCCHHHHHHHHHHHhCCC-CeEEEEec
Confidence 3589999999999999999999995 78888763
No 133
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=96.61 E-value=0.0087 Score=50.87 Aligned_cols=38 Identities=37% Similarity=0.435 Sum_probs=33.5
Q ss_pred HHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 81 ERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 81 ~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
..+++++|+|.|.|.+|..+++.|...|..-+.+.|.+
T Consensus 27 ~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~ 64 (227)
T cd01076 27 IGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSD 64 (227)
T ss_pred CCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 34788999999999999999999999998777788864
No 134
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=96.61 E-value=0.0091 Score=50.40 Aligned_cols=38 Identities=32% Similarity=0.368 Sum_probs=35.1
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
.+++++|+|.|+|.+|+.+++.|...|...+.+.|.+-
T Consensus 20 ~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g 57 (217)
T cd05211 20 SLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDG 57 (217)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCC
Confidence 46789999999999999999999999999999999765
No 135
>PRK05876 short chain dehydrogenase; Provisional
Probab=96.60 E-value=0.017 Score=49.86 Aligned_cols=87 Identities=21% Similarity=0.243 Sum_probs=58.8
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++|.| .||+|.++++.|++.|. ++.++|.+. .+.+.+.+.+... ..++..+..
T Consensus 4 ~~~k~vlVTGas~gIG~ala~~La~~G~-~Vv~~~r~~------------------~~l~~~~~~l~~~--~~~~~~~~~ 62 (275)
T PRK05876 4 FPGRGAVITGGASGIGLATGTEFARRGA-RVVLGDVDK------------------PGLRQAVNHLRAE--GFDVHGVMC 62 (275)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CCeEEEEeC
Confidence 5567888887 88999999999999998 577776432 1333344445433 335556777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..+++.+... +.+.|+||.+.
T Consensus 63 Dv~d~~~v~~~~~~~~~~-------~g~id~li~nA 91 (275)
T PRK05876 63 DVRHREEVTHLADEAFRL-------LGHVDVVFSNA 91 (275)
T ss_pred CCCCHHHHHHHHHHHHHH-------cCCCCEEEECC
Confidence 888777777766554322 34678888765
No 136
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.60 E-value=0.015 Score=49.06 Aligned_cols=88 Identities=15% Similarity=0.267 Sum_probs=58.1
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.|+ |++|+.+++.|+..|. ++.+++.+. .+.+.+.+.+.+.. .++..+..
T Consensus 5 ~~~~~vlItGasg~iG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~ 63 (262)
T PRK13394 5 LNGKTAVVTGAASGIGKEIALELARAGA-AVAIADLNQ------------------DGANAVADEINKAG--GKAIGVAM 63 (262)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEeCCh------------------HHHHHHHHHHHhcC--ceEEEEEC
Confidence 55778999985 9999999999999998 577766432 13444455555442 34556667
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.++.++..+.. ...++|+||.|..
T Consensus 64 Dl~~~~~~~~~~~~~~~-------~~~~~d~vi~~ag 93 (262)
T PRK13394 64 DVTNEDAVNAGIDKVAE-------RFGSVDILVSNAG 93 (262)
T ss_pred CCCCHHHHHHHHHHHHH-------HcCCCCEEEECCc
Confidence 77776666665544322 1246788887764
No 137
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=96.60 E-value=0.019 Score=49.21 Aligned_cols=89 Identities=16% Similarity=0.253 Sum_probs=58.1
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
.+++++++|.| .||+|..+++.|++.|. ++.++|.+.- +.+.+.+.+... ..++..+.
T Consensus 7 ~~~~k~vlVtGas~giG~~ia~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~~~~~--~~~~~~~~ 65 (278)
T PRK08277 7 SLKGKVAVITGGGGVLGGAMAKELARAGA-KVAILDRNQE------------------KAEAVVAEIKAA--GGEALAVK 65 (278)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHHHHhc--CCeEEEEE
Confidence 45678899998 58999999999999998 6888775421 333444444432 23455667
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.++.+.+.+..+++.+.. .+..+|+||.|..
T Consensus 66 ~Dl~~~~~v~~~~~~~~~-------~~g~id~li~~ag 96 (278)
T PRK08277 66 ADVLDKESLEQARQQILE-------DFGPCDILINGAG 96 (278)
T ss_pred CCCCCHHHHHHHHHHHHH-------HcCCCCEEEECCC
Confidence 777766666655544322 1346788887643
No 138
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=96.59 E-value=0.02 Score=48.18 Aligned_cols=88 Identities=16% Similarity=0.259 Sum_probs=58.0
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++|+|.| .|++|+++++.|+..|. ++.+++...- +.+.+...+... ..+++.+..
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~-~v~~~~r~~~------------------~~~~~~~~~~~~--~~~~~~~~~ 60 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGA-KVVIADLNDE------------------AAAAAAEALQKA--GGKAIGVAM 60 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCHH------------------HHHHHHHHHHhc--CCcEEEEEc
Confidence 4567899998 79999999999999987 5666654321 333444444443 345556777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+.+..++..+... +.++|+||.|..
T Consensus 61 Dl~~~~~~~~~~~~~~~~-------~~~~d~vi~~a~ 90 (258)
T PRK12429 61 DVTDEEAINAGIDYAVET-------FGGVDILVNNAG 90 (258)
T ss_pred CCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 777777766665544332 246888887663
No 139
>PLN00203 glutamyl-tRNA reductase
Probab=96.59 E-value=0.0042 Score=58.93 Aligned_cols=36 Identities=17% Similarity=0.360 Sum_probs=32.7
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
|.+++|+|||+|.+|..+++.|...|+.++++++.+
T Consensus 264 l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs 299 (519)
T PLN00203 264 HASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS 299 (519)
T ss_pred CCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 557999999999999999999999999999998754
No 140
>PRK06198 short chain dehydrogenase; Provisional
Probab=96.59 E-value=0.017 Score=48.82 Aligned_cols=89 Identities=12% Similarity=0.221 Sum_probs=58.5
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++|+|+| .|++|+.+++.|+..|...+.+++.+.- +.......+... ...+..+..
T Consensus 4 ~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~~~~r~~~------------------~~~~~~~~l~~~--~~~~~~~~~ 63 (260)
T PRK06198 4 LDGKVALVTGGTQGLGAAIARAFAERGAAGLVICGRNAE------------------KGEAQAAELEAL--GAKAVFVQA 63 (260)
T ss_pred CCCcEEEEeCCCchHHHHHHHHHHHCCCCeEEEEcCCHH------------------HHHHHHHHHHhc--CCeEEEEEc
Confidence 5678899998 5899999999999999877888876421 122233334333 334556667
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+..+++.+... +.++|+||.|..
T Consensus 64 D~~~~~~~~~~~~~~~~~-------~g~id~li~~ag 93 (260)
T PRK06198 64 DLSDVEDCRRVVAAADEA-------FGRLDALVNAAG 93 (260)
T ss_pred cCCCHHHHHHHHHHHHHH-------hCCCCEEEECCC
Confidence 777666666655443221 246888888863
No 141
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=96.59 E-value=0.014 Score=42.11 Aligned_cols=90 Identities=17% Similarity=0.210 Sum_probs=54.2
Q ss_pred cEEEEecCchHHHHHHHHHHhcC--ceEEEE-eCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGI--GRLLLY-DYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv--~~i~Li-D~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
||.|||+|.+|+.++..|.+.|+ .++.++ +.+.- |++.+++.+ + +. ....
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r~~~------------------~~~~~~~~~----~-~~--~~~~-- 53 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSRSPE------------------KAAELAKEY----G-VQ--ATAD-- 53 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEESSHH------------------HHHHHHHHC----T-TE--EESE--
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccCcHH------------------HHHHHHHhh----c-cc--cccC--
Confidence 68999999999999999999994 455543 43322 444443332 2 22 1110
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHH-HHHcCCcEEEeC
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQA-CNELNQTWMESG 221 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~-~~~~~~p~i~~g 221 (231)
++ .. ..+..|+||.|+........+.+. ....+..+|+.-
T Consensus 54 ---~~-~~--------------~~~~advvilav~p~~~~~v~~~i~~~~~~~~vis~~ 94 (96)
T PF03807_consen 54 ---DN-EE--------------AAQEADVVILAVKPQQLPEVLSEIPHLLKGKLVISIA 94 (96)
T ss_dssp ---EH-HH--------------HHHHTSEEEE-S-GGGHHHHHHHHHHHHTTSEEEEES
T ss_pred ---Ch-HH--------------hhccCCEEEEEECHHHHHHHHHHHhhccCCCEEEEeC
Confidence 11 11 124789999999988777666665 344566666653
No 142
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.59 E-value=0.012 Score=49.39 Aligned_cols=88 Identities=11% Similarity=0.202 Sum_probs=57.4
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++|.| .|++|.++++.|+..|..-+.+.+.+ ..+.+.+.+.++..+. .+..+..
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~r~------------------~~~~~~~~~~~~~~~~--~~~~~~~ 61 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYARS------------------RKAAEETAEEIEALGR--KALAVKA 61 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCCC------------------HHHHHHHHHHHHhcCC--eEEEEEc
Confidence 3457899997 68999999999999997544332211 1244555566665543 4556777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..+++.+... +.+.|+||.+.
T Consensus 62 D~~~~~~~~~~~~~~~~~-------~~~id~vi~~a 90 (250)
T PRK08063 62 NVGDVEKIKEMFAQIDEE-------FGRLDVFVNNA 90 (250)
T ss_pred CCCCHHHHHHHHHHHHHH-------cCCCCEEEECC
Confidence 787777777666554332 24678888765
No 143
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=96.59 E-value=0.0085 Score=51.97 Aligned_cols=36 Identities=19% Similarity=0.288 Sum_probs=31.3
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
..+++|+|+|+||+|..++..|+..|. +++++|.+.
T Consensus 115 ~~~k~vliiGaGg~g~aia~~L~~~g~-~v~v~~R~~ 150 (270)
T TIGR00507 115 RPNQRVLIIGAGGAARAVALPLLKADC-NVIIANRTV 150 (270)
T ss_pred ccCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCCH
Confidence 346789999999999999999999996 899988653
No 144
>PTZ00082 L-lactate dehydrogenase; Provisional
Probab=96.58 E-value=0.0081 Score=53.64 Aligned_cols=37 Identities=27% Similarity=0.598 Sum_probs=32.4
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
++..||+|||+|.+|+.++..++..|..+++|+|-+.
T Consensus 4 ~~~~KI~IIGaG~vG~~ia~~la~~gl~~i~LvDi~~ 40 (321)
T PTZ00082 4 IKRRKISLIGSGNIGGVMAYLIVLKNLGDVVLFDIVK 40 (321)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHhCCCCeEEEEeCCC
Confidence 3457999999999999999999999987799999643
No 145
>PLN02253 xanthoxin dehydrogenase
Probab=96.58 E-value=0.015 Score=49.86 Aligned_cols=88 Identities=13% Similarity=0.219 Sum_probs=57.7
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
++.+++++|.| .||+|.++++.|++.|. ++.++|.+.- +.+.+.+.+ .....+..+.
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~-~v~~~~~~~~------------------~~~~~~~~~---~~~~~~~~~~ 72 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGA-KVCIVDLQDD------------------LGQNVCDSL---GGEPNVCFFH 72 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCCHH------------------HHHHHHHHh---cCCCceEEEE
Confidence 45677899997 78999999999999996 6777764311 222233333 2234566777
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.++++.+.++.++..+... +.++|+||.+..
T Consensus 73 ~Dl~d~~~~~~~~~~~~~~-------~g~id~li~~Ag 103 (280)
T PLN02253 73 CDVTVEDDVSRAVDFTVDK-------FGTLDIMVNNAG 103 (280)
T ss_pred eecCCHHHHHHHHHHHHHH-------hCCCCEEEECCC
Confidence 7888777777666544322 346888887653
No 146
>PRK07774 short chain dehydrogenase; Provisional
Probab=96.58 E-value=0.017 Score=48.53 Aligned_cols=88 Identities=14% Similarity=0.271 Sum_probs=56.2
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.|. |++|..+++.|+..|. ++.++|.+.- +.+.+.+.+....+ .+..+..
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~-~vi~~~r~~~------------------~~~~~~~~~~~~~~--~~~~~~~ 62 (250)
T PRK07774 4 FDDKVAIVTGAAGGIGQAYAEALAREGA-SVVVADINAE------------------GAERVAKQIVADGG--TAIAVQV 62 (250)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHHHHhcCC--cEEEEEc
Confidence 46788999985 9999999999999996 6777764421 22223333433222 3445666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+..++..+.+. +..+|+||.|..
T Consensus 63 Dl~~~~~~~~~~~~~~~~-------~~~id~vi~~ag 92 (250)
T PRK07774 63 DVSDPDSAKAMADATVSA-------FGGIDYLVNNAA 92 (250)
T ss_pred CCCCHHHHHHHHHHHHHH-------hCCCCEEEECCC
Confidence 777666666665544332 246888887654
No 147
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.55 E-value=0.016 Score=48.46 Aligned_cols=87 Identities=17% Similarity=0.274 Sum_probs=58.1
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++|.| .|++|..+++.|+..|. ++.+++.+.- +.+.+.+.+... ...+..+..
T Consensus 5 ~~~~~vlVtG~sg~iG~~l~~~L~~~G~-~Vi~~~r~~~------------------~~~~~~~~~~~~--~~~~~~~~~ 63 (239)
T PRK07666 5 LQGKNALITGAGRGIGRAVAIALAKEGV-NVGLLARTEE------------------NLKAVAEEVEAY--GVKVVIATA 63 (239)
T ss_pred CCCCEEEEEcCCchHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHHHHHh--CCeEEEEEC
Confidence 4567899997 77999999999999998 7888875431 223333444332 335566777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..+++.+.. .+.++|+||.+.
T Consensus 64 D~~~~~~~~~~~~~~~~-------~~~~id~vi~~a 92 (239)
T PRK07666 64 DVSDYEEVTAAIEQLKN-------ELGSIDILINNA 92 (239)
T ss_pred CCCCHHHHHHHHHHHHH-------HcCCccEEEEcC
Confidence 77776666666554332 235788888775
No 148
>PRK06196 oxidoreductase; Provisional
Probab=96.55 E-value=0.014 Score=51.27 Aligned_cols=83 Identities=13% Similarity=0.331 Sum_probs=55.3
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++|+|.|+ ||+|.++++.|++.|. ++++++.+. .+.+.+.+.+.. +..+..
T Consensus 24 l~~k~vlITGasggIG~~~a~~L~~~G~-~Vv~~~R~~------------------~~~~~~~~~l~~------v~~~~~ 78 (315)
T PRK06196 24 LSGKTAIVTGGYSGLGLETTRALAQAGA-HVIVPARRP------------------DVAREALAGIDG------VEVVML 78 (315)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHhhh------CeEEEc
Confidence 56778999985 8999999999999997 577766432 133333333321 446677
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..+++.+... +.+.|+||.+.
T Consensus 79 Dl~d~~~v~~~~~~~~~~-------~~~iD~li~nA 107 (315)
T PRK06196 79 DLADLESVRAFAERFLDS-------GRRIDILINNA 107 (315)
T ss_pred cCCCHHHHHHHHHHHHhc-------CCCCCEEEECC
Confidence 787777777776554332 24678888765
No 149
>PRK07453 protochlorophyllide oxidoreductase; Validated
Probab=96.54 E-value=0.018 Score=50.78 Aligned_cols=86 Identities=23% Similarity=0.358 Sum_probs=56.7
Q ss_pred hcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 84 REFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 84 ~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
.+++|+|.| .||+|.++++.|++.|. ++++++.+. .|.+.+.+.+.. +...+..+..+
T Consensus 5 ~~k~vlVTGas~gIG~~~a~~L~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~--~~~~~~~~~~D 63 (322)
T PRK07453 5 AKGTVIITGASSGVGLYAAKALAKRGW-HVIMACRNL------------------KKAEAAAQELGI--PPDSYTIIHID 63 (322)
T ss_pred CCCEEEEEcCCChHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHhhc--cCCceEEEEec
Confidence 456788887 68999999999999995 677776432 144444444432 23345566777
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+.+.+.+..+++.+... ....|+||.+.
T Consensus 64 l~~~~~v~~~~~~~~~~-------~~~iD~li~nA 91 (322)
T PRK07453 64 LGDLDSVRRFVDDFRAL-------GKPLDALVCNA 91 (322)
T ss_pred CCCHHHHHHHHHHHHHh-------CCCccEEEECC
Confidence 87777777666543321 24678888764
No 150
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=96.54 E-value=0.032 Score=51.51 Aligned_cols=94 Identities=22% Similarity=0.240 Sum_probs=63.2
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccCc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTV 166 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~ 166 (231)
+|+|+|+|.+|..+++.|...|. +++++|.+.- +++.+.+. .++ ..+..+.++.
T Consensus 2 ~viIiG~G~ig~~~a~~L~~~g~-~v~vid~~~~------------------~~~~~~~~-----~~~--~~~~gd~~~~ 55 (453)
T PRK09496 2 KIIIVGAGQVGYTLAENLSGENN-DVTVIDTDEE------------------RLRRLQDR-----LDV--RTVVGNGSSP 55 (453)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-cEEEEECCHH------------------HHHHHHhh-----cCE--EEEEeCCCCH
Confidence 79999999999999999999886 6788886433 33332221 122 3444444433
Q ss_pred cchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHc-CCcEEE
Q 026893 167 QGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNEL-NQTWME 219 (231)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~-~~p~i~ 219 (231)
..+.. ..+.++|.||.|+++......+...+++. +.+.+-
T Consensus 56 ~~l~~-------------~~~~~a~~vi~~~~~~~~n~~~~~~~r~~~~~~~ii 96 (453)
T PRK09496 56 DVLRE-------------AGAEDADLLIAVTDSDETNMVACQIAKSLFGAPTTI 96 (453)
T ss_pred HHHHH-------------cCCCcCCEEEEecCChHHHHHHHHHHHHhcCCCeEE
Confidence 33321 23678999999999888877788888876 555443
No 151
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=96.54 E-value=0.019 Score=48.55 Aligned_cols=88 Identities=17% Similarity=0.298 Sum_probs=59.8
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++|+| .|++|..+++.|++.|. ++.+++.+.- +.+.+.+.+.+... ++..+..
T Consensus 9 ~~~k~ilItGas~~IG~~la~~l~~~G~-~v~~~~r~~~------------------~~~~~~~~~~~~~~--~~~~~~~ 67 (256)
T PRK06124 9 LAGQVALVTGSARGLGFEIARALAGAGA-HVLVNGRNAA------------------TLEAAVAALRAAGG--AAEALAF 67 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHcCC-eEEEEeCCHH------------------HHHHHHHHHHhcCC--ceEEEEc
Confidence 5678899997 68999999999999997 7888876531 33444555554333 3556677
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+..+++.+... +...|.||.+..
T Consensus 68 Dl~~~~~~~~~~~~~~~~-------~~~id~vi~~ag 97 (256)
T PRK06124 68 DIADEEAVAAAFARIDAE-------HGRLDILVNNVG 97 (256)
T ss_pred cCCCHHHHHHHHHHHHHh-------cCCCCEEEECCC
Confidence 777767666666554322 246788887654
No 152
>PRK06172 short chain dehydrogenase; Provisional
Probab=96.52 E-value=0.02 Score=48.33 Aligned_cols=88 Identities=13% Similarity=0.180 Sum_probs=57.7
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++|+|.| .||+|.++++.|++.|. ++.+++.+.- +.+.+.+.+.+.+ .++..+..
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~-~v~~~~r~~~------------------~~~~~~~~~~~~~--~~~~~~~~ 63 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGA-KVVVADRDAA------------------GGEETVALIREAG--GEALFVAC 63 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHH------------------HHHHHHHHHHhcC--CceEEEEc
Confidence 4578999998 57999999999999996 5777764321 3333444454443 34556777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+..+++.+... +.+.|+||.+..
T Consensus 64 D~~~~~~i~~~~~~~~~~-------~g~id~li~~ag 93 (253)
T PRK06172 64 DVTRDAEVKALVEQTIAA-------YGRLDYAFNNAG 93 (253)
T ss_pred CCCCHHHHHHHHHHHHHH-------hCCCCEEEECCC
Confidence 777766666665543322 246788887653
No 153
>PLN03209 translocon at the inner envelope of chloroplast subunit 62; Provisional
Probab=96.52 E-value=0.03 Score=53.72 Aligned_cols=111 Identities=16% Similarity=0.203 Sum_probs=65.5
Q ss_pred HHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhC-------C
Q 026893 81 ERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADIN-------P 152 (231)
Q Consensus 81 ~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~n-------p 152 (231)
+...++.|+|.| .|++|..+++.|++.|. ++++++.+.- |.+.+.+.+.++. +
T Consensus 76 ~~~~gKvVLVTGATGgIG~aLAr~LLk~G~-~Vval~Rn~e------------------kl~~l~~~l~~~~L~~~Ga~~ 136 (576)
T PLN03209 76 DTKDEDLAFVAGATGKVGSRTVRELLKLGF-RVRAGVRSAQ------------------RAESLVQSVKQMKLDVEGTQP 136 (576)
T ss_pred ccCCCCEEEEECCCCHHHHHHHHHHHHCCC-eEEEEeCCHH------------------HHHHHHHHhhhhccccccccc
Confidence 344566788888 59999999999999996 5666554321 3333343333221 1
Q ss_pred CcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCH---------------HHHHHHHHHHHHcCC-c
Q 026893 153 DVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNY---------------EARMAVNQACNELNQ-T 216 (231)
Q Consensus 153 ~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~---------------~~r~~i~~~~~~~~~-p 216 (231)
..+++.+..++.+.+.+.. .+.++|+||.|.... ..-..+.++|...++ .
T Consensus 137 ~~~v~iV~gDLtD~esI~~--------------aLggiDiVVn~AG~~~~~v~d~~~~~~VN~~Gt~nLl~Aa~~agVgR 202 (576)
T PLN03209 137 VEKLEIVECDLEKPDQIGP--------------ALGNASVVICCIGASEKEVFDVTGPYRIDYLATKNLVDAATVAKVNH 202 (576)
T ss_pred cCceEEEEecCCCHHHHHH--------------HhcCCCEEEEccccccccccchhhHHHHHHHHHHHHHHHHHHhCCCE
Confidence 1234566666665444332 246789999886421 112345667776664 4
Q ss_pred EEEeCccC
Q 026893 217 WMESGKQS 224 (231)
Q Consensus 217 ~i~~g~~g 224 (231)
+|..+..|
T Consensus 203 IV~VSSig 210 (576)
T PLN03209 203 FILVTSLG 210 (576)
T ss_pred EEEEccch
Confidence 66655543
No 154
>PRK05872 short chain dehydrogenase; Provisional
Probab=96.52 E-value=0.025 Score=49.39 Aligned_cols=87 Identities=20% Similarity=0.306 Sum_probs=58.6
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++|+|.| .||+|..+++.|++.|. ++.+++.+. .+.+.+.+.+ .....+..+..
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~------------------~~l~~~~~~l---~~~~~~~~~~~ 64 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGA-KLALVDLEE------------------AELAALAAEL---GGDDRVLTVVA 64 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHh---cCCCcEEEEEe
Confidence 5678899998 58999999999999997 677776431 1333333333 22345555667
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+..+++.+... +.+.|+||.+..
T Consensus 65 Dv~d~~~v~~~~~~~~~~-------~g~id~vI~nAG 94 (296)
T PRK05872 65 DVTDLAAMQAAAEEAVER-------FGGIDVVVANAG 94 (296)
T ss_pred cCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 787777777766554332 357899888764
No 155
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=96.51 E-value=0.02 Score=48.39 Aligned_cols=88 Identities=18% Similarity=0.322 Sum_probs=59.0
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++|.| .||+|..+++.|++.|. ++.++|.+. .+.+.+.+.+... ...+..+..
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~-~vvl~~r~~------------------~~~~~~~~~l~~~--~~~~~~~~~ 65 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGA-EIIINDITA------------------ERAELAVAKLRQE--GIKAHAAPF 65 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCC-EEEEEcCCH------------------HHHHHHHHHHHhc--CCeEEEEec
Confidence 5577899997 68999999999999996 676765331 1444444445443 234556777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+.+..+++.+... +.+.|+||.+..
T Consensus 66 Dl~~~~~~~~~~~~~~~~-------~~~id~vi~~ag 95 (254)
T PRK08085 66 NVTHKQEVEAAIEHIEKD-------IGPIDVLINNAG 95 (254)
T ss_pred CCCCHHHHHHHHHHHHHh-------cCCCCEEEECCC
Confidence 787777777766554322 356888888764
No 156
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.51 E-value=0.01 Score=52.74 Aligned_cols=50 Identities=28% Similarity=0.351 Sum_probs=39.5
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcC-ceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCC
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGI-GRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINP 152 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv-~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np 152 (231)
..||.|||+|.+|+.++..|+..|. .+|.|+|-.. .|++..+.-|+...|
T Consensus 3 ~~Ki~IiGaG~VG~~~a~~l~~~~~~~el~LiD~~~------------------~~~~g~a~Dl~~~~~ 53 (312)
T cd05293 3 RNKVTVVGVGQVGMACAISILAKGLADELVLVDVVE------------------DKLKGEAMDLQHGSA 53 (312)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc------------------cHHHHHHHHHHHhhc
Confidence 3589999999999999999999998 5799998532 256666666766654
No 157
>PRK08643 acetoin reductase; Validated
Probab=96.50 E-value=0.022 Score=48.13 Aligned_cols=85 Identities=14% Similarity=0.213 Sum_probs=55.9
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
+++++|+| .||+|..+++.|+..|. ++.++|.+. .+.+.+...+.+.. .++..+..++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~Dl 60 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGF-KVAIVDYNE------------------ETAQAAADKLSKDG--GKAIAVKADV 60 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CeEEEEECCC
Confidence 45778886 78999999999999997 677776332 13334444454432 3455677778
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++.+.+...+..+... +.+.|+||.|.
T Consensus 61 ~~~~~~~~~~~~~~~~-------~~~id~vi~~a 87 (256)
T PRK08643 61 SDRDQVFAAVRQVVDT-------FGDLNVVVNNA 87 (256)
T ss_pred CCHHHHHHHHHHHHHH-------cCCCCEEEECC
Confidence 8777776666554322 24678888775
No 158
>PRK06181 short chain dehydrogenase; Provisional
Probab=96.50 E-value=0.025 Score=47.98 Aligned_cols=85 Identities=22% Similarity=0.338 Sum_probs=56.9
Q ss_pred CcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 86 FSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 86 ~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
++|+|.|+ |++|.++++.|+..|. +++++|.+. .+.+.+.+.+..... .+..+..++.
T Consensus 2 ~~vlVtGasg~iG~~la~~l~~~g~-~Vi~~~r~~------------------~~~~~~~~~l~~~~~--~~~~~~~Dl~ 60 (263)
T PRK06181 2 KVVIITGASEGIGRALAVRLARAGA-QLVLAARNE------------------TRLASLAQELADHGG--EALVVPTDVS 60 (263)
T ss_pred CEEEEecCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--cEEEEEccCC
Confidence 57889985 8999999999999996 788877532 134444555555433 4556677777
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
+.+.++.+++.+... +.+.|+||.|..
T Consensus 61 ~~~~~~~~~~~~~~~-------~~~id~vi~~ag 87 (263)
T PRK06181 61 DAEACERLIEAAVAR-------FGGIDILVNNAG 87 (263)
T ss_pred CHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 767766665543221 246888888853
No 159
>PRK08265 short chain dehydrogenase; Provisional
Probab=96.49 E-value=0.019 Score=48.99 Aligned_cols=84 Identities=17% Similarity=0.232 Sum_probs=54.4
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.| .||+|..+++.|++.|. ++++.|.+.- +.+.+.+. +. .++..+..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~---~~--~~~~~~~~ 59 (261)
T PRK08265 4 LAGKVAIVTGGATLIGAAVARALVAAGA-RVAIVDIDAD------------------NGAAVAAS---LG--ERARFIAT 59 (261)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHH---hC--CeeEEEEe
Confidence 5678899998 48999999999999997 7888775421 22222222 22 23456667
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..+++.+... +...|++|.+.
T Consensus 60 Dl~~~~~~~~~~~~~~~~-------~g~id~lv~~a 88 (261)
T PRK08265 60 DITDDAAIERAVATVVAR-------FGRVDILVNLA 88 (261)
T ss_pred cCCCHHHHHHHHHHHHHH-------hCCCCEEEECC
Confidence 777766666665543321 34678877764
No 160
>PRK08589 short chain dehydrogenase; Validated
Probab=96.48 E-value=0.02 Score=49.19 Aligned_cols=87 Identities=20% Similarity=0.330 Sum_probs=58.5
Q ss_pred HHhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
++.+++++|.|+ ||+|.++++.|+..|. ++.+++.+ .+.+.+.+.+.+. ..++..+.
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~-~vi~~~r~-------------------~~~~~~~~~~~~~--~~~~~~~~ 60 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGA-YVLAVDIA-------------------EAVSETVDKIKSN--GGKAKAYH 60 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCc-------------------HHHHHHHHHHHhc--CCeEEEEE
Confidence 356788999985 8999999999999996 66666532 1344444555443 23456777
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
.++++.+.+..+++.+... +...|++|.+.
T Consensus 61 ~Dl~~~~~~~~~~~~~~~~-------~g~id~li~~A 90 (272)
T PRK08589 61 VDISDEQQVKDFASEIKEQ-------FGRVDVLFNNA 90 (272)
T ss_pred eecCCHHHHHHHHHHHHHH-------cCCcCEEEECC
Confidence 7888777777766654332 24678887764
No 161
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=96.47 E-value=0.026 Score=54.64 Aligned_cols=90 Identities=16% Similarity=0.241 Sum_probs=67.5
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
+.+|+|+|+|.+|..+++.|...|+ +++++|.|.- +++.++ +. +.. .+..+.+
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~-~vvvID~d~~------------------~v~~~~----~~--g~~--v~~GDat 452 (601)
T PRK03659 400 KPQVIIVGFGRFGQVIGRLLMANKM-RITVLERDIS------------------AVNLMR----KY--GYK--VYYGDAT 452 (601)
T ss_pred cCCEEEecCchHHHHHHHHHHhCCC-CEEEEECCHH------------------HHHHHH----hC--CCe--EEEeeCC
Confidence 4689999999999999999999998 7899997754 444332 22 333 4555666
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcC
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELN 214 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~ 214 (231)
+.+-+++ ..++++|.|+.|+++.+....+...+++++
T Consensus 453 ~~~~L~~-------------agi~~A~~vv~~~~d~~~n~~i~~~~r~~~ 489 (601)
T PRK03659 453 QLELLRA-------------AGAEKAEAIVITCNEPEDTMKIVELCQQHF 489 (601)
T ss_pred CHHHHHh-------------cCCccCCEEEEEeCCHHHHHHHHHHHHHHC
Confidence 5444432 356799999999999998888888888763
No 162
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=96.47 E-value=0.022 Score=47.68 Aligned_cols=88 Identities=14% Similarity=0.331 Sum_probs=57.2
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
|++++++|.| .|++|+.+++.|+..|. ++.++|.+.- +.+.+.+.+..... ++..+..
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~-~v~~~~r~~~------------------~~~~~~~~~~~~~~--~~~~~~~ 59 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGA-KVAVFDLNRE------------------AAEKVAADIRAKGG--NAQAFAC 59 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCHH------------------HHHHHHHHHHhcCC--cEEEEEc
Confidence 4578899998 68999999999999887 5777664331 33344444544332 3456666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+.++.++..+... +.+.|+||.|..
T Consensus 60 d~~~~~~~~~~~~~~~~~-------~~~~d~vi~~ag 89 (250)
T TIGR03206 60 DITDRDSVDTAVAAAEQA-------LGPVDVLVNNAG 89 (250)
T ss_pred CCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 777666666665543321 246788887763
No 163
>PRK07576 short chain dehydrogenase; Provisional
Probab=96.47 E-value=0.019 Score=49.06 Aligned_cols=89 Identities=20% Similarity=0.290 Sum_probs=58.4
Q ss_pred HHHhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 81 ERIREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 81 ~kl~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
.++.+++++|.|. ||+|+.+++.|+..|. ++.++|.+. .+.+...+.+....+. +..+
T Consensus 5 ~~~~~k~ilItGasggIG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~~~--~~~~ 63 (264)
T PRK07576 5 FDFAGKNVVVVGGTSGINLGIAQAFARAGA-NVAVASRSQ------------------EKVDAAVAQLQQAGPE--GLGV 63 (264)
T ss_pred ccCCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHHhCCc--eEEE
Confidence 3567889999985 8999999999999987 477777542 1233334444444333 3466
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
..++++.+.+..+++.+.. .+.+.|+||.+.
T Consensus 64 ~~Dv~~~~~i~~~~~~~~~-------~~~~iD~vi~~a 94 (264)
T PRK07576 64 SADVRDYAAVEAAFAQIAD-------EFGPIDVLVSGA 94 (264)
T ss_pred ECCCCCHHHHHHHHHHHHH-------HcCCCCEEEECC
Confidence 7777776767666654322 124678888664
No 164
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=96.46 E-value=0.0046 Score=44.20 Aligned_cols=39 Identities=28% Similarity=0.474 Sum_probs=34.7
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCcc
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKV 120 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v 120 (231)
.+..++++|+|+|++|..++..|...|..++.++|.|.+
T Consensus 20 ~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~rdi~ 58 (86)
T cd05191 20 SLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDRDIL 58 (86)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCEE
Confidence 367889999999999999999999998889999998443
No 165
>PRK06125 short chain dehydrogenase; Provisional
Probab=96.43 E-value=0.022 Score=48.33 Aligned_cols=84 Identities=21% Similarity=0.325 Sum_probs=56.1
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.|+ ||+|..+++.|+..|. ++.+++.+.- +.+.+.+.+.... ..++..+..
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~l~~~~-~~~~~~~~~ 64 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGC-HLHLVARDAD------------------ALEALAADLRAAH-GVDVAVHAL 64 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCHH------------------HHHHHHHHHHhhc-CCceEEEEe
Confidence 56788999986 7999999999999998 8888775421 3334444444332 334556667
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..+++. +...|++|.|.
T Consensus 65 D~~~~~~~~~~~~~-----------~g~id~lv~~a 89 (259)
T PRK06125 65 DLSSPEAREQLAAE-----------AGDIDILVNNA 89 (259)
T ss_pred cCCCHHHHHHHHHH-----------hCCCCEEEECC
Confidence 77766666555431 24678887764
No 166
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=96.42 E-value=0.0059 Score=56.48 Aligned_cols=36 Identities=19% Similarity=0.438 Sum_probs=33.2
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+.+.+|+|+|+|++|..++..|...|+.+++++|.+
T Consensus 180 ~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~ 215 (423)
T PRK00045 180 LSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT 215 (423)
T ss_pred ccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 678999999999999999999999999999998754
No 167
>cd00300 LDH_like L-lactate dehydrogenase-like enzymes. Members of this subfamily are tetrameric NAD-dependent 2-hydroxycarboxylate dehydrogenases including LDHs, L-2-hydroxyisocaproate dehydrogenases (L-HicDH), and LDH-like malate dehydrogenases (MDH). Dehydrogenases catalyze the conversion of carbonyl compounds to alcohols or amino acids. LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. L-HicDH catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of prot
Probab=96.41 E-value=0.011 Score=52.28 Aligned_cols=74 Identities=20% Similarity=0.349 Sum_probs=51.5
Q ss_pred EEEEecCchHHHHHHHHHHhcC-ceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcE-EEEEeecccC
Q 026893 88 VAIVGVGGVGSVAAEMLTRCGI-GRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVV-LESFTLNITT 165 (231)
Q Consensus 88 V~IvG~GgvGs~ia~~La~~Gv-~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~-v~~~~~~i~~ 165 (231)
|.|||+|.+|+.++-.|+..|+ .+|+|+|.+. .|++..+..|....+... ...+. .
T Consensus 1 i~iiGaG~VG~~~a~~l~~~~~~~el~l~D~~~------------------~~~~g~~~DL~~~~~~~~~~~i~~---~- 58 (300)
T cd00300 1 ITIIGAGNVGAAVAFALIAKGLASELVLVDVNE------------------EKAKGDALDLSHASAFLATGTIVR---G- 58 (300)
T ss_pred CEEECCCHHHHHHHHHHHhcCCCCEEEEEeCCc------------------cHHHHHHHhHHHhccccCCCeEEE---C-
Confidence 5799999999999999999997 6799999543 367777777777755411 11111 1
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccCC
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDN 199 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~ 199 (231)
.+.+ .+.++|+||.|...
T Consensus 59 -~~~~---------------~l~~aDiVIitag~ 76 (300)
T cd00300 59 -GDYA---------------DAADADIVVITAGA 76 (300)
T ss_pred -CCHH---------------HhCCCCEEEEcCCC
Confidence 1122 34799999998764
No 168
>PRK07814 short chain dehydrogenase; Provisional
Probab=96.39 E-value=0.026 Score=48.12 Aligned_cols=88 Identities=11% Similarity=0.200 Sum_probs=58.5
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++|.| .||+|.++++.|+..|. ++.++|.+. .+.+.+.+.+...+ ..+..+..
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~-~Vi~~~r~~------------------~~~~~~~~~l~~~~--~~~~~~~~ 66 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGA-DVLIAARTE------------------SQLDEVAEQIRAAG--RRAHVVAA 66 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcC--CcEEEEEc
Confidence 5678899998 56899999999999998 888887542 13334444554433 34556667
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+...++.+... +.++|+||.+..
T Consensus 67 D~~~~~~~~~~~~~~~~~-------~~~id~vi~~Ag 96 (263)
T PRK07814 67 DLAHPEATAGLAGQAVEA-------FGRLDIVVNNVG 96 (263)
T ss_pred cCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 777766666555443221 247899988653
No 169
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.37 E-value=0.017 Score=51.68 Aligned_cols=33 Identities=21% Similarity=0.276 Sum_probs=29.6
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
++|+|||+|-.|+.+|..++..|. +++++|.+.
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~-~V~l~D~~~ 40 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGL-DVVAWDPAP 40 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999996 888999654
No 170
>PLN02427 UDP-apiose/xylose synthase
Probab=96.37 E-value=0.017 Score=52.30 Aligned_cols=37 Identities=24% Similarity=0.373 Sum_probs=30.1
Q ss_pred HHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeC
Q 026893 81 ERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 81 ~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
++++.++|+|.| +|-+|+++++.|...|--+++.+|.
T Consensus 10 ~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 10 KPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 456677899998 6999999999999885347777774
No 171
>PRK06500 short chain dehydrogenase; Provisional
Probab=96.37 E-value=0.023 Score=47.59 Aligned_cols=35 Identities=23% Similarity=0.367 Sum_probs=28.9
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+.+++|+|.| .|++|.++++.|+..|. ++.+++.+
T Consensus 4 ~~~k~vlItGasg~iG~~la~~l~~~g~-~v~~~~r~ 39 (249)
T PRK06500 4 LQGKTALITGGTSGIGLETARQFLAEGA-RVAITGRD 39 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCC
Confidence 5578899998 58999999999999997 57776543
No 172
>PRK12829 short chain dehydrogenase; Provisional
Probab=96.37 E-value=0.024 Score=47.87 Aligned_cols=90 Identities=17% Similarity=0.320 Sum_probs=58.2
Q ss_pred HHHHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEE
Q 026893 79 NYERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLE 157 (231)
Q Consensus 79 ~~~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~ 157 (231)
....+++++++|+| .|++|..+++.|+..|. ++++++.+.= +.+.+.+.+ +..++.
T Consensus 5 ~~~~~~~~~vlItGa~g~iG~~~a~~L~~~g~-~V~~~~r~~~------------------~~~~~~~~~----~~~~~~ 61 (264)
T PRK12829 5 LLKPLDGLRVLVTGGASGIGRAIAEAFAEAGA-RVHVCDVSEA------------------ALAATAARL----PGAKVT 61 (264)
T ss_pred HhhccCCCEEEEeCCCCcHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHHH----hcCceE
Confidence 34557889999998 68999999999999998 4888774321 122222222 222455
Q ss_pred EEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 158 SFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.+..++.+.+.+...++.+.. .+.++|+||.+..
T Consensus 62 ~~~~D~~~~~~~~~~~~~~~~-------~~~~~d~vi~~ag 95 (264)
T PRK12829 62 ATVADVADPAQVERVFDTAVE-------RFGGLDVLVNNAG 95 (264)
T ss_pred EEEccCCCHHHHHHHHHHHHH-------HhCCCCEEEECCC
Confidence 667777766666655544332 2357899987764
No 173
>TIGR03589 PseB UDP-N-acetylglucosamine 4,6-dehydratase. This enzyme catalyzes the first step in the biosynthesis of pseudaminic acid, the conversion of UDP-N-acetylglucosamine to UDP-4-keto-6-deoxy-N-acetylglucosamine. These sequences are members of the broader pfam01073 (3-beta hydroxysteroid dehydrogenase/isomerase family) family.
Probab=96.37 E-value=0.07 Score=47.27 Aligned_cols=36 Identities=22% Similarity=0.361 Sum_probs=29.6
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhc-CceEEEEeCC
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCG-IGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~G-v~~i~LiD~D 118 (231)
+++++|+|.| +|++|+++++.|+..| ..+++++|.+
T Consensus 2 ~~~k~vLVTGatG~IG~~l~~~L~~~g~~~~V~~~~r~ 39 (324)
T TIGR03589 2 FNNKSILITGGTGSFGKAFISRLLENYNPKKIIIYSRD 39 (324)
T ss_pred cCCCEEEEeCCCCHHHHHHHHHHHHhCCCcEEEEEcCC
Confidence 3567899998 6899999999999987 4578888754
No 174
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=96.37 E-value=0.011 Score=54.70 Aligned_cols=38 Identities=29% Similarity=0.438 Sum_probs=34.0
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCcc
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKV 120 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v 120 (231)
.+.+++|+|+|+|.+|..++..|...|+ +++++|.|..
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga-~ViV~d~dp~ 246 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGA-RVIVTEVDPI 246 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEcCCch
Confidence 3689999999999999999999999999 7999887654
No 175
>PRK07035 short chain dehydrogenase; Provisional
Probab=96.36 E-value=0.027 Score=47.41 Aligned_cols=87 Identities=13% Similarity=0.301 Sum_probs=55.2
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++|+|.| .||+|.++++.|++.|. ++.++|.+. .+.+.+.+.+.+..+ ++..+..
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~-~Vi~~~r~~------------------~~~~~~~~~~~~~~~--~~~~~~~ 64 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGA-HVIVSSRKL------------------DGCQAVADAIVAAGG--KAEALAC 64 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCC--eEEEEEc
Confidence 5677899997 78999999999999997 788877532 133334444544332 3345555
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++.+.+..+.++..+.. .+.+.|+||.+.
T Consensus 65 D~~~~~~~~~~~~~~~~-------~~~~id~li~~a 93 (252)
T PRK07035 65 HIGEMEQIDALFAHIRE-------RHGRLDILVNNA 93 (252)
T ss_pred CCCCHHHHHHHHHHHHH-------HcCCCCEEEECC
Confidence 66665555555544322 124678877665
No 176
>PRK07326 short chain dehydrogenase; Provisional
Probab=96.36 E-value=0.026 Score=46.93 Aligned_cols=86 Identities=15% Similarity=0.235 Sum_probs=55.1
Q ss_pred hcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 84 REFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 84 ~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
.+.+|+|+| .|++|+.+++.|+..|. ++++++.+. .+...+.+.+... ..++.+..+
T Consensus 5 ~~~~ilItGatg~iG~~la~~l~~~g~-~V~~~~r~~------------------~~~~~~~~~l~~~---~~~~~~~~D 62 (237)
T PRK07326 5 KGKVALITGGSKGIGFAIAEALLAEGY-KVAITARDQ------------------KELEEAAAELNNK---GNVLGLAAD 62 (237)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEeeCCH------------------HHHHHHHHHHhcc---CcEEEEEcc
Confidence 457899998 58999999999999987 477766432 1333333444332 235566667
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
+.+.+.+..++..+... +.++|+||.+..
T Consensus 63 ~~~~~~~~~~~~~~~~~-------~~~~d~vi~~ag 91 (237)
T PRK07326 63 VRDEADVQRAVDAIVAA-------FGGLDVLIANAG 91 (237)
T ss_pred CCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 77666666655443322 247899987753
No 177
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=96.35 E-value=0.026 Score=48.09 Aligned_cols=89 Identities=13% Similarity=0.335 Sum_probs=60.8
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
++++++++|.| .||+|..+++.|+..|.. +.+++.+. .+.+.+.+.+... ..++..+.
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~-vv~~~~~~------------------~~~~~~~~~~~~~--~~~~~~~~ 65 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGAT-IVFNDINQ------------------ELVDKGLAAYREL--GIEAHGYV 65 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCe-EEEEeCCH------------------HHHHHHHHHHHhc--CCceEEEE
Confidence 45678899997 579999999999999974 66655321 2444445555543 33456778
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.++++.+.+..++..+... +.+.|+||.|..
T Consensus 66 ~Dl~~~~~~~~~~~~~~~~-------~~~id~li~~ag 96 (265)
T PRK07097 66 CDVTDEDGVQAMVSQIEKE-------VGVIDILVNNAG 96 (265)
T ss_pred cCCCCHHHHHHHHHHHHHh-------CCCCCEEEECCC
Confidence 8888877777777654332 246888887753
No 178
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=96.35 E-value=0.02 Score=49.46 Aligned_cols=91 Identities=14% Similarity=0.115 Sum_probs=54.7
Q ss_pred CcEEEEec-CchHHHHHHHHHHh-cCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 86 FSVAIVGV-GGVGSVAAEMLTRC-GIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 86 ~~V~IvG~-GgvGs~ia~~La~~-Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
.+|+|+|| |.+|..++..+... ++.-..++|.+.- .... + -..++. .
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~~---~~~~--~-------------------~~~~i~--~----- 50 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPGS---PLVG--Q-------------------GALGVA--I----- 50 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCCc---cccc--c-------------------CCCCcc--c-----
Confidence 48999999 99999999988764 4444455665421 1100 0 001111 0
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
..+++. .+.++|+|++++ +...-..+...|.+.|+|++.. +.|+
T Consensus 51 --~~dl~~--------------ll~~~DvVid~t-~p~~~~~~~~~al~~G~~vvig-ttG~ 94 (257)
T PRK00048 51 --TDDLEA--------------VLADADVLIDFT-TPEATLENLEFALEHGKPLVIG-TTGF 94 (257)
T ss_pred --cCCHHH--------------hccCCCEEEECC-CHHHHHHHHHHHHHcCCCEEEE-CCCC
Confidence 122222 234688999888 4455577888888889988844 5443
No 179
>PRK07677 short chain dehydrogenase; Provisional
Probab=96.35 E-value=0.03 Score=47.26 Aligned_cols=84 Identities=14% Similarity=0.252 Sum_probs=55.7
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
++++|.| .||+|..+++.|+..|. ++.++|.+.- +.+.+.+.+.... ..+..+..+++
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~-~Vi~~~r~~~------------------~~~~~~~~~~~~~--~~~~~~~~D~~ 60 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGA-NVVITGRTKE------------------KLEEAKLEIEQFP--GQVLTVQMDVR 60 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHHHHhcC--CcEEEEEecCC
Confidence 5788887 57899999999999998 7888776531 3333444444432 24556777777
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+.+.++.+++.+... +...|+||.+.
T Consensus 61 ~~~~~~~~~~~~~~~-------~~~id~lI~~a 86 (252)
T PRK07677 61 NPEDVQKMVEQIDEK-------FGRIDALINNA 86 (252)
T ss_pred CHHHHHHHHHHHHHH-------hCCccEEEECC
Confidence 777777666543221 24678888765
No 180
>PRK08618 ornithine cyclodeaminase; Validated
Probab=96.34 E-value=0.012 Score=52.47 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=66.2
Q ss_pred HhcCcEEEEecCchHHHHHHHHH-HhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLT-RCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La-~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
-..++++|+|+|+.|...+..+. ..|+.+++++|.+.- |++.+++.+.... .+.+..+
T Consensus 125 ~~~~~v~iiGaG~~a~~~~~al~~~~~~~~v~v~~r~~~------------------~a~~~~~~~~~~~-~~~~~~~-- 183 (325)
T PRK08618 125 EDAKTLCLIGTGGQAKGQLEAVLAVRDIERVRVYSRTFE------------------KAYAFAQEIQSKF-NTEIYVV-- 183 (325)
T ss_pred CCCcEEEEECCcHHHHHHHHHHHhcCCccEEEEECCCHH------------------HHHHHHHHHHHhc-CCcEEEe--
Confidence 34678999999999998888775 568999999875532 7777787776543 2333232
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQ 223 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~ 223 (231)
++.+. .+.++|+|+.|+-+... .+. .+.+.|.-++..|..
T Consensus 184 -----~~~~~--------------~~~~aDiVi~aT~s~~p--~i~-~~l~~G~hV~~iGs~ 223 (325)
T PRK08618 184 -----NSADE--------------AIEEADIIVTVTNAKTP--VFS-EKLKKGVHINAVGSF 223 (325)
T ss_pred -----CCHHH--------------HHhcCCEEEEccCCCCc--chH-HhcCCCcEEEecCCC
Confidence 11221 23589999999987643 344 455667777766654
No 181
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=96.34 E-value=0.031 Score=46.99 Aligned_cols=38 Identities=21% Similarity=0.399 Sum_probs=31.7
Q ss_pred HHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 81 ERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 81 ~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
..+++++|+|.| .|++|..+++.|+..|. ++.++|.+.
T Consensus 8 ~~~~~k~vlItG~~g~iG~~la~~l~~~G~-~Vi~~~r~~ 46 (247)
T PRK08945 8 DLLKDRIILVTGAGDGIGREAALTYARHGA-TVILLGRTE 46 (247)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-cEEEEeCCH
Confidence 456788899997 78899999999999987 788887653
No 182
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=96.34 E-value=0.03 Score=47.34 Aligned_cols=89 Identities=17% Similarity=0.239 Sum_probs=57.0
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
++.+++|+|+| .||+|..+++.|+..|. ++.++|.+. .+.+.+.+.+... ..++..+.
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~-~vv~~~r~~------------------~~~~~~~~~l~~~--~~~~~~~~ 66 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGA-SVVVSDINA------------------DAANHVVDEIQQL--GGQAFACR 66 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCCH------------------HHHHHHHHHHHhc--CCcEEEEE
Confidence 36688999997 78999999999999997 466655321 1334444444443 23455666
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.++++.+.+..++..+... +.+.|+||.|..
T Consensus 67 ~D~~~~~~i~~~~~~~~~~-------~~~~d~li~~ag 97 (255)
T PRK06113 67 CDITSEQELSALADFALSK-------LGKVDILVNNAG 97 (255)
T ss_pred ccCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 7777766666655443322 246788887653
No 183
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=96.33 E-value=0.023 Score=49.46 Aligned_cols=31 Identities=26% Similarity=0.499 Sum_probs=28.1
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+|+|+|+|.+|+.++..|++.|. +++++|.+
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~-~V~~~~r~ 32 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGH-DVTLVARR 32 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCC-eEEEEECC
Confidence 69999999999999999999984 79998864
No 184
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.33 E-value=0.028 Score=46.80 Aligned_cols=89 Identities=13% Similarity=0.314 Sum_probs=57.4
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++|+| .|++|..+++.|+..|...+.+++.+. .+.+.+.+.+.... .++..+..
T Consensus 3 ~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~~ 62 (247)
T PRK05565 3 LMGKVAIVTGASGGIGRAIAELLAKEGAKVVIAYDINE------------------EAAQELLEEIKEEG--GDAIAVKA 62 (247)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEcCCCH------------------HHHHHHHHHHHhcC--CeEEEEEC
Confidence 5677899998 589999999999999975443325332 14444555555433 34556777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+..++..+.. .+.++|+||.+..
T Consensus 63 D~~~~~~~~~~~~~~~~-------~~~~id~vi~~ag 92 (247)
T PRK05565 63 DVSSEEDVENLVEQIVE-------KFGKIDILVNNAG 92 (247)
T ss_pred CCCCHHHHHHHHHHHHH-------HhCCCCEEEECCC
Confidence 78777766666544322 1246888887653
No 185
>PLN02602 lactate dehydrogenase
Probab=96.32 E-value=0.012 Score=53.17 Aligned_cols=32 Identities=34% Similarity=0.510 Sum_probs=29.6
Q ss_pred CcEEEEecCchHHHHHHHHHHhcC-ceEEEEeC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGI-GRLLLYDY 117 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv-~~i~LiD~ 117 (231)
.||.|||+|.+|+.+|..|+..|+ .+|.|+|-
T Consensus 38 ~KI~IIGaG~VG~~~a~~l~~~~l~~el~LiDi 70 (350)
T PLN02602 38 TKVSVVGVGNVGMAIAQTILTQDLADELALVDV 70 (350)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCCCEEEEEeC
Confidence 699999999999999999999898 58999995
No 186
>PRK07024 short chain dehydrogenase; Provisional
Probab=96.32 E-value=0.026 Score=47.86 Aligned_cols=84 Identities=17% Similarity=0.210 Sum_probs=53.8
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
.++|+|.| .||+|..+++.|++.|. ++.++|.+.- +.+.+.+.+... . ++..+..++
T Consensus 2 ~~~vlItGas~gIG~~la~~l~~~G~-~v~~~~r~~~------------------~~~~~~~~~~~~--~-~~~~~~~Dl 59 (257)
T PRK07024 2 PLKVFITGASSGIGQALAREYARQGA-TLGLVARRTD------------------ALQAFAARLPKA--A-RVSVYAADV 59 (257)
T ss_pred CCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHhcccC--C-eeEEEEcCC
Confidence 35788887 78999999999999997 7888775421 222233333211 1 566777777
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++.+.+..+++.+... ....|++|.+.
T Consensus 60 ~~~~~i~~~~~~~~~~-------~g~id~lv~~a 86 (257)
T PRK07024 60 RDADALAAAAADFIAA-------HGLPDVVIANA 86 (257)
T ss_pred CCHHHHHHHHHHHHHh-------CCCCCEEEECC
Confidence 7766666655443222 23578888764
No 187
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.32 E-value=0.016 Score=50.77 Aligned_cols=34 Identities=29% Similarity=0.581 Sum_probs=30.3
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCcc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKV 120 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v 120 (231)
.+|+|||+|..|+.+|.++++.|. +++++|.+.=
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~-~V~l~d~~~~ 39 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGV-DVLVFETTEE 39 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCC-EEEEEECCHH
Confidence 489999999999999999999997 7999996544
No 188
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.30 E-value=0.032 Score=47.63 Aligned_cols=88 Identities=11% Similarity=0.168 Sum_probs=56.4
Q ss_pred HhcCcEEEEec---CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 83 IREFSVAIVGV---GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 83 l~~~~V~IvG~---GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
+.++.++|.|. +|+|.++++.|++.|. ++.+.+... . ...+.+.+.+. + +..++..+
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~-~v~~~~r~~---~------------~~~~~~~~~~~---~-~~~~~~~~ 64 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGA-KLVFTYAGE---R------------LEKEVRELADT---L-EGQESLLL 64 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEecCcc---c------------chHHHHHHHHH---c-CCCceEEE
Confidence 55788999997 5999999999999997 576765321 0 01122323222 2 12345567
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
..++++.+..+.+++.+... +...|++|.|.
T Consensus 65 ~~Dv~d~~~v~~~~~~~~~~-------~g~ld~lv~na 95 (257)
T PRK08594 65 PCDVTSDEEITACFETIKEE-------VGVIHGVAHCI 95 (257)
T ss_pred ecCCCCHHHHHHHHHHHHHh-------CCCccEEEECc
Confidence 77888878887777655332 34678877664
No 189
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=96.30 E-value=0.019 Score=53.08 Aligned_cols=37 Identities=27% Similarity=0.434 Sum_probs=32.9
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCcc
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKV 120 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v 120 (231)
+.+.+|+|+|+|.+|..++..+...|+ +++++|.|..
T Consensus 200 l~GktVvViG~G~IG~~va~~ak~~Ga-~ViV~d~d~~ 236 (413)
T cd00401 200 IAGKVAVVAGYGDVGKGCAQSLRGQGA-RVIVTEVDPI 236 (413)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEECChh
Confidence 578899999999999999999999999 6888887654
No 190
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.28 E-value=0.031 Score=46.39 Aligned_cols=88 Identities=15% Similarity=0.280 Sum_probs=54.8
Q ss_pred hcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 84 REFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 84 ~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
..++|+|+| .|++|+++++.|+..|..-+.+...+. ...+.+...+....+. ++.+..+
T Consensus 5 ~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~~~------------------~~~~~~~~~~~~~~~~--~~~~~~D 64 (249)
T PRK12825 5 MGRVALVTGAARGLGRAIALRLARAGADVVVHYRSDE------------------EAAEELVEAVEALGRR--AQAVQAD 64 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCCH------------------HHHHHHHHHHHhcCCc--eEEEECC
Confidence 456899997 799999999999999985433332211 1223344444444443 4466677
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
+.+.+.+..++..+... +.++|+||.|..
T Consensus 65 ~~~~~~v~~~~~~~~~~-------~~~id~vi~~ag 93 (249)
T PRK12825 65 VTDKAALEAAVAAAVER-------FGRIDILVNNAG 93 (249)
T ss_pred cCCHHHHHHHHHHHHHH-------cCCCCEEEECCc
Confidence 77666666665443222 257899987753
No 191
>PRK12744 short chain dehydrogenase; Provisional
Probab=96.28 E-value=0.034 Score=47.05 Aligned_cols=92 Identities=17% Similarity=0.295 Sum_probs=58.1
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++|+|.| .||+|..+++.|+..|...+.+ +...- . ...+.+.+.+.+... +.+++.+..
T Consensus 6 l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i-~~~~~--~------------~~~~~~~~~~~l~~~--~~~~~~~~~ 68 (257)
T PRK12744 6 LKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAI-HYNSA--A------------SKADAEETVAAVKAA--GAKAVAFQA 68 (257)
T ss_pred CCCcEEEEECCCchHHHHHHHHHHHCCCcEEEE-ecCCc--c------------chHHHHHHHHHHHHh--CCcEEEEec
Confidence 5567899997 7899999999999999864444 32110 0 112334444445443 335567777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+..++..+... +.+.|++|.+..
T Consensus 69 D~~~~~~~~~~~~~~~~~-------~~~id~li~~ag 98 (257)
T PRK12744 69 DLTTAAAVEKLFDDAKAA-------FGRPDIAINTVG 98 (257)
T ss_pred CcCCHHHHHHHHHHHHHh-------hCCCCEEEECCc
Confidence 888777777776554322 246788886654
No 192
>PRK06914 short chain dehydrogenase; Provisional
Probab=96.28 E-value=0.033 Score=47.73 Aligned_cols=87 Identities=14% Similarity=0.208 Sum_probs=54.2
Q ss_pred hcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 84 REFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 84 ~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
++++++|.| .|++|+.+++.|+..|. ++++++.+.- +.+.+.+.+.....+..++.+..+
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~~~~~~~~~~~~~~~~D 62 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGY-LVIATMRNPE------------------KQENLLSQATQLNLQQNIKVQQLD 62 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCC-EEEEEeCCHH------------------HHHHHHHHHHhcCCCCceeEEecC
Confidence 356788887 68999999999999986 5666664421 333334444444434456667777
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+++.+.++. +..+.. .+.+.|+||.|.
T Consensus 63 ~~d~~~~~~-~~~~~~-------~~~~id~vv~~a 89 (280)
T PRK06914 63 VTDQNSIHN-FQLVLK-------EIGRIDLLVNNA 89 (280)
T ss_pred CCCHHHHHH-HHHHHH-------hcCCeeEEEECC
Confidence 776666555 332221 124678887775
No 193
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=96.27 E-value=0.052 Score=48.36 Aligned_cols=35 Identities=26% Similarity=0.266 Sum_probs=28.7
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++++|+|.| +|.+|+++++.|++.|. +++.+|.+
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~-~V~~~~r~ 37 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGA-EVYGYSLD 37 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCC-EEEEEeCC
Confidence 3568899998 58899999999999995 57777754
No 194
>PRK07890 short chain dehydrogenase; Provisional
Probab=96.25 E-value=0.039 Score=46.48 Aligned_cols=87 Identities=16% Similarity=0.210 Sum_probs=57.2
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++|+|.| .||+|..+++.|+..|. ++.++|.+. .+.+.+.+.+... ..+++.+..
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~~ 61 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGA-DVVLAARTA------------------ERLDEVAAEIDDL--GRRALAVPT 61 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHHh--CCceEEEec
Confidence 4567899998 68999999999999997 788877432 1333334444432 234556777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..+++.+... +..+|+||.+.
T Consensus 62 D~~~~~~~~~~~~~~~~~-------~g~~d~vi~~a 90 (258)
T PRK07890 62 DITDEDQCANLVALALER-------FGRVDALVNNA 90 (258)
T ss_pred CCCCHHHHHHHHHHHHHH-------cCCccEEEECC
Confidence 777766666665443221 24678888765
No 195
>PRK07109 short chain dehydrogenase; Provisional
Probab=96.25 E-value=0.033 Score=49.69 Aligned_cols=89 Identities=16% Similarity=0.201 Sum_probs=60.8
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
.+.+++|+|.| .||+|.++++.|++.|. ++.+++.+. .+.+.+.+.+... +.++..+.
T Consensus 5 ~l~~k~vlITGas~gIG~~la~~la~~G~-~Vvl~~R~~------------------~~l~~~~~~l~~~--g~~~~~v~ 63 (334)
T PRK07109 5 PIGRQVVVITGASAGVGRATARAFARRGA-KVVLLARGE------------------EGLEALAAEIRAA--GGEALAVV 63 (334)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHHc--CCcEEEEE
Confidence 35577899998 58999999999999997 677776432 1444455555544 34555777
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.++++.+.++..++.+.. .+...|++|.+..
T Consensus 64 ~Dv~d~~~v~~~~~~~~~-------~~g~iD~lInnAg 94 (334)
T PRK07109 64 ADVADAEAVQAAADRAEE-------ELGPIDTWVNNAM 94 (334)
T ss_pred ecCCCHHHHHHHHHHHHH-------HCCCCCEEEECCC
Confidence 788877777766554322 2357899887764
No 196
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=96.24 E-value=0.034 Score=47.05 Aligned_cols=35 Identities=23% Similarity=0.414 Sum_probs=29.3
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+.+++++|.| .|++|..+++.|++.|. ++.++|.+
T Consensus 4 l~~~~vlItGas~~iG~~ia~~l~~~G~-~v~~~~r~ 39 (257)
T PRK07067 4 LQGKVALLTGAASGIGEAVAERYLAEGA-RVVIADIK 39 (257)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 5577899998 69999999999999997 57777654
No 197
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=96.24 E-value=0.037 Score=46.91 Aligned_cols=87 Identities=11% Similarity=0.182 Sum_probs=55.7
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
++.+++|+|.| .||+|..+++.|+..|. ++.+++.+ . +.+.+.+.+.+.+ -++..+.
T Consensus 12 ~l~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~~~----~---------------~~~~~~~~~~~~~--~~~~~~~ 69 (258)
T PRK06935 12 SLDGKVAIVTGGNTGLGQGYAVALAKAGA-DIIITTHG----T---------------NWDETRRLIEKEG--RKVTFVQ 69 (258)
T ss_pred cCCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC----c---------------HHHHHHHHHHhcC--CceEEEE
Confidence 46778999998 58999999999999997 45565543 1 2223344444433 2345666
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
.++.+.+.+..+++.+... +...|++|.+.
T Consensus 70 ~D~~~~~~i~~~~~~~~~~-------~g~id~li~~a 99 (258)
T PRK06935 70 VDLTKPESAEKVVKEALEE-------FGKIDILVNNA 99 (258)
T ss_pred cCCCCHHHHHHHHHHHHHH-------cCCCCEEEECC
Confidence 7777766666666544322 24677777664
No 198
>PRK07074 short chain dehydrogenase; Provisional
Probab=96.24 E-value=0.038 Score=46.66 Aligned_cols=84 Identities=19% Similarity=0.318 Sum_probs=53.9
Q ss_pred cCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
+++++|.|+ |++|..+++.|+..|. +++++|.+.- +.+.+.+.+ +...++.+..++
T Consensus 2 ~k~ilItGat~~iG~~la~~L~~~g~-~v~~~~r~~~------------------~~~~~~~~~----~~~~~~~~~~D~ 58 (257)
T PRK07074 2 KRTALVTGAAGGIGQALARRFLAAGD-RVLALDIDAA------------------ALAAFADAL----GDARFVPVACDL 58 (257)
T ss_pred CCEEEEECCcchHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHHh----cCCceEEEEecC
Confidence 457899985 8999999999999986 6888765321 333333333 233466777777
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.+.+.+...++.+... +.++|+||.+..
T Consensus 59 ~~~~~~~~~~~~~~~~-------~~~~d~vi~~ag 86 (257)
T PRK07074 59 TDAASLAAALANAAAE-------RGPVDVLVANAG 86 (257)
T ss_pred CCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 7766665554433221 246788887763
No 199
>PLN02240 UDP-glucose 4-epimerase
Probab=96.24 E-value=0.082 Score=46.84 Aligned_cols=33 Identities=21% Similarity=0.392 Sum_probs=28.1
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEe
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYD 116 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD 116 (231)
+++++|+|.| +|++|+++++.|+..|. +++++|
T Consensus 3 ~~~~~vlItGatG~iG~~l~~~L~~~g~-~V~~~~ 36 (352)
T PLN02240 3 LMGRTILVTGGAGYIGSHTVLQLLLAGY-KVVVID 36 (352)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEe
Confidence 4567899997 59999999999999985 677776
No 200
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.24 E-value=0.034 Score=47.79 Aligned_cols=86 Identities=13% Similarity=0.160 Sum_probs=55.4
Q ss_pred HhcCcEEEEecC---chHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 83 IREFSVAIVGVG---GVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 83 l~~~~V~IvG~G---gvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
+.++.++|.|.+ |+|..+++.|++.|. ++.+.|.+. +.+...+.+....+.+ ..+
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~-~vil~~r~~-------------------~~~~~~~~~~~~~~~~--~~~ 61 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGA-ELAFTYQND-------------------KLKGRVEEFAAQLGSD--IVL 61 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCC-EEEEEecch-------------------hHHHHHHHHHhccCCc--eEe
Confidence 567889999986 799999999999997 577766431 1111122222222332 356
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
..++++.+.++.++..+.+. +...|++|.+.
T Consensus 62 ~~Dl~~~~~v~~~~~~~~~~-------~g~iD~linnA 92 (262)
T PRK07984 62 PCDVAEDASIDAMFAELGKV-------WPKFDGFVHSI 92 (262)
T ss_pred ecCCCCHHHHHHHHHHHHhh-------cCCCCEEEECC
Confidence 67787777777777654332 34678888776
No 201
>TIGR02992 ectoine_eutC ectoine utilization protein EutC. Members of this protein family are EutA, a predicted arylmalonate decarboxylase found in a conserved ectoine utilization operon of species that include Sinorhizobium meliloti 1021 (where it is known to be induced by ectoine), Mesorhizobium loti, Silicibacter pomeroyi, Agrobacterium tumefaciens, and Pseudomonas putida. This family belongs to the ornithine cyclodeaminase/mu-crystallin family (pfam02423).
Probab=96.23 E-value=0.016 Score=51.84 Aligned_cols=76 Identities=21% Similarity=0.246 Sum_probs=54.6
Q ss_pred cCcEEEEecCchHHHHHHHHH-HhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLT-RCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La-~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
.++++|+|+|+.|...+..|. ..++.++++++.+.- |++.+++++.+.. ++++...
T Consensus 129 ~~~v~iiGaG~qA~~~~~al~~~~~i~~v~V~~R~~~------------------~a~~~a~~~~~~~-g~~v~~~---- 185 (326)
T TIGR02992 129 SSVVAIFGAGMQARLQLEALTLVRDIRSARIWARDSA------------------KAEALALQLSSLL-GIDVTAA---- 185 (326)
T ss_pred CcEEEEECCCHHHHHHHHHHHHhCCccEEEEECCCHH------------------HHHHHHHHHHhhc-CceEEEe----
Confidence 468999999999999999997 478999999875443 8888888876533 2333222
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCH
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNY 200 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~ 200 (231)
++.+. .+.++|+|+.|+-+.
T Consensus 186 ---~~~~~--------------av~~aDiVvtaT~s~ 205 (326)
T TIGR02992 186 ---TDPRA--------------AMSGADIIVTTTPSE 205 (326)
T ss_pred ---CCHHH--------------HhccCCEEEEecCCC
Confidence 12221 236899999998764
No 202
>PRK05717 oxidoreductase; Validated
Probab=96.23 E-value=0.03 Score=47.36 Aligned_cols=36 Identities=25% Similarity=0.300 Sum_probs=29.6
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.+++++|+|.| .|++|.++++.|++.|. ++.++|.+
T Consensus 7 ~~~~k~vlItG~sg~IG~~~a~~l~~~g~-~v~~~~~~ 43 (255)
T PRK05717 7 GHNGRVALVTGAARGIGLGIAAWLIAEGW-QVVLADLD 43 (255)
T ss_pred ccCCCEEEEeCCcchHHHHHHHHHHHcCC-EEEEEcCC
Confidence 35567899998 68999999999999996 77777643
No 203
>PRK06223 malate dehydrogenase; Reviewed
Probab=96.22 E-value=0.031 Score=49.26 Aligned_cols=32 Identities=31% Similarity=0.645 Sum_probs=29.6
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
.||+|||+|.+|+.++..++..|.+++.|+|.
T Consensus 3 ~KI~VIGaG~vG~~ia~~la~~~~~ev~L~D~ 34 (307)
T PRK06223 3 KKISIIGAGNVGATLAHLLALKELGDVVLFDI 34 (307)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEEEC
Confidence 58999999999999999999998669999996
No 204
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.21 E-value=0.028 Score=49.50 Aligned_cols=33 Identities=33% Similarity=0.580 Sum_probs=29.2
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
++|.|||+|..|+.++..|++.|. +++++|.+.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~-~V~~~d~~~ 37 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGL-QVVLIDVME 37 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCC-eEEEEECCH
Confidence 479999999999999999999996 788988643
No 205
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=96.21 E-value=0.032 Score=47.42 Aligned_cols=91 Identities=13% Similarity=0.306 Sum_probs=59.9
Q ss_pred HHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 81 ERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 81 ~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
..+++++++|.| .+|+|.++++.|++.|.. +.+++... ..+.+.+.+.+... ...++..+
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~-v~~~~~~~-----------------~~~~~~~~~~~~~~-~~~~~~~~ 64 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVN-IAFTYNSN-----------------VEEANKIAEDLEQK-YGIKAKAY 64 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCC-----------------HHHHHHHHHHHHHh-cCCceEEE
Confidence 346778899997 589999999999999984 55543110 12444444444432 23456678
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
..++++.+.+..+++.+... +..+|++|.+.
T Consensus 65 ~~D~~~~~~~~~~~~~~~~~-------~g~id~lv~nA 95 (260)
T PRK08416 65 PLNILEPETYKELFKKIDED-------FDRVDFFISNA 95 (260)
T ss_pred EcCCCCHHHHHHHHHHHHHh-------cCCccEEEECc
Confidence 88888877777777654332 35788888765
No 206
>PRK08309 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.096 Score=42.71 Aligned_cols=100 Identities=15% Similarity=0.230 Sum_probs=68.2
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccCc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTV 166 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~ 166 (231)
+++|+|..|.|..++..|+..|. ++++++.+. .+++.+...+.. .-.+..+..++.+.
T Consensus 2 ~vlVtGGtG~gg~la~~L~~~G~-~V~v~~R~~------------------~~~~~l~~~l~~---~~~i~~~~~Dv~d~ 59 (177)
T PRK08309 2 HALVIGGTGMLKRVSLWLCEKGF-HVSVIARRE------------------VKLENVKRESTT---PESITPLPLDYHDD 59 (177)
T ss_pred EEEEECcCHHHHHHHHHHHHCcC-EEEEEECCH------------------HHHHHHHHHhhc---CCcEEEEEccCCCH
Confidence 58899988888899999999997 566655321 133333332321 22456777788887
Q ss_pred cchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCc
Q 026893 167 QGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQT 216 (231)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p 216 (231)
+.+..+++..... ....|++|.++... ....+..+|++.++.
T Consensus 60 ~sv~~~i~~~l~~-------~g~id~lv~~vh~~-~~~~~~~~~~~~gv~ 101 (177)
T PRK08309 60 DALKLAIKSTIEK-------NGPFDLAVAWIHSS-AKDALSVVCRELDGS 101 (177)
T ss_pred HHHHHHHHHHHHH-------cCCCeEEEEecccc-chhhHHHHHHHHccC
Confidence 7777776543221 24789999887654 567889999999987
No 207
>PRK08628 short chain dehydrogenase; Provisional
Probab=96.20 E-value=0.034 Score=46.95 Aligned_cols=87 Identities=14% Similarity=0.208 Sum_probs=55.3
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.| .||+|..+++.|++.|.. +.+++.+.- +. .+.+.+....+ ++..+..
T Consensus 5 l~~~~ilItGasggiG~~la~~l~~~G~~-v~~~~r~~~------------------~~-~~~~~~~~~~~--~~~~~~~ 62 (258)
T PRK08628 5 LKDKVVIVTGGASGIGAAISLRLAEEGAI-PVIFGRSAP------------------DD-EFAEELRALQP--RAEFVQV 62 (258)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHcCCc-EEEEcCChh------------------hH-HHHHHHHhcCC--ceEEEEc
Confidence 6678999998 789999999999999974 555543211 11 22333444333 3456777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+...++.+... +.+.|+||.|..
T Consensus 63 D~~~~~~~~~~~~~~~~~-------~~~id~vi~~ag 92 (258)
T PRK08628 63 DLTDDAQCRDAVEQTVAK-------FGRIDGLVNNAG 92 (258)
T ss_pred cCCCHHHHHHHHHHHHHh-------cCCCCEEEECCc
Confidence 777766666655443221 246788887764
No 208
>PRK06114 short chain dehydrogenase; Provisional
Probab=96.19 E-value=0.043 Score=46.45 Aligned_cols=89 Identities=12% Similarity=0.190 Sum_probs=56.8
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.| .||+|.++++.|+..|. ++.++|.+.- .+.+.+.+.+..... ++..+..
T Consensus 6 ~~~k~~lVtG~s~gIG~~ia~~l~~~G~-~v~~~~r~~~-----------------~~~~~~~~~l~~~~~--~~~~~~~ 65 (254)
T PRK06114 6 LDGQVAFVTGAGSGIGQRIAIGLAQAGA-DVALFDLRTD-----------------DGLAETAEHIEAAGR--RAIQIAA 65 (254)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCcc-----------------hHHHHHHHHHHhcCC--ceEEEEc
Confidence 5678888887 77999999999999997 6777664321 123334444544432 3445666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+.+..++..+.. .+...|+||.|..
T Consensus 66 D~~~~~~i~~~~~~~~~-------~~g~id~li~~ag 95 (254)
T PRK06114 66 DVTSKADLRAAVARTEA-------ELGALTLAVNAAG 95 (254)
T ss_pred CCCCHHHHHHHHHHHHH-------HcCCCCEEEECCC
Confidence 77766666666554332 2346788887753
No 209
>PRK06841 short chain dehydrogenase; Provisional
Probab=96.18 E-value=0.035 Score=46.78 Aligned_cols=85 Identities=14% Similarity=0.279 Sum_probs=55.1
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++|+|.| .|++|.++++.|+..|. ++.+++.+.- +.+. .. ++ +...+..+..
T Consensus 13 ~~~k~vlItGas~~IG~~la~~l~~~G~-~Vi~~~r~~~------------------~~~~-~~---~~-~~~~~~~~~~ 68 (255)
T PRK06841 13 LSGKVAVVTGGASGIGHAIAELFAAKGA-RVALLDRSED------------------VAEV-AA---QL-LGGNAKGLVC 68 (255)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHH-HH---Hh-hCCceEEEEe
Confidence 5678999998 59999999999999997 5777764321 1111 11 11 1233446777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+..+++.+... +.+.|+||.|..
T Consensus 69 Dl~~~~~~~~~~~~~~~~-------~~~~d~vi~~ag 98 (255)
T PRK06841 69 DVSDSQSVEAAVAAVISA-------FGRIDILVNSAG 98 (255)
T ss_pred cCCCHHHHHHHHHHHHHH-------hCCCCEEEECCC
Confidence 777777777666544322 246788887763
No 210
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=96.17 E-value=0.026 Score=47.99 Aligned_cols=85 Identities=8% Similarity=0.181 Sum_probs=52.8
Q ss_pred HHhcCcEEEEecC---chHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEE
Q 026893 82 RIREFSVAIVGVG---GVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLES 158 (231)
Q Consensus 82 kl~~~~V~IvG~G---gvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~ 158 (231)
++++++++|.|.+ |+|..+++.|++.|. ++.+.+.+. +. .+.+.++.+ -.+..
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~-~Vi~~~r~~-------------------~~---~~~~~~~~~-~~~~~ 59 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGA-TVIYTYQND-------------------RM---KKSLQKLVD-EEDLL 59 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEecCch-------------------HH---HHHHHhhcc-CceeE
Confidence 3567889999974 999999999999997 466655321 11 111222222 13446
Q ss_pred EeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 159 FTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+..++++.+..+.+++.+... +...|++|.+.
T Consensus 60 ~~~Dl~~~~~v~~~~~~~~~~-------~g~iD~lv~nA 91 (252)
T PRK06079 60 VECDVASDESIERAFATIKER-------VGKIDGIVHAI 91 (252)
T ss_pred EeCCCCCHHHHHHHHHHHHHH-------hCCCCEEEEcc
Confidence 667777766676666554322 24677777654
No 211
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=96.17 E-value=0.027 Score=49.57 Aligned_cols=33 Identities=30% Similarity=0.543 Sum_probs=28.9
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
.+|.|+|+|.+|+.++..|++.|. +++++|.+.
T Consensus 2 mkI~iiG~G~mG~~~a~~L~~~g~-~V~~~~r~~ 34 (325)
T PRK00094 2 MKIAVLGAGSWGTALAIVLARNGH-DVTLWARDP 34 (325)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-EEEEEECCH
Confidence 379999999999999999999987 588888654
No 212
>PRK07825 short chain dehydrogenase; Provisional
Probab=96.16 E-value=0.023 Score=48.64 Aligned_cols=83 Identities=22% Similarity=0.369 Sum_probs=52.5
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++|.| .||+|..+++.|+..|.. +.+.+.+.- +.+.+.+.+. .++.+..
T Consensus 3 ~~~~~ilVtGasggiG~~la~~l~~~G~~-v~~~~r~~~------------------~~~~~~~~~~------~~~~~~~ 57 (273)
T PRK07825 3 LRGKVVAITGGARGIGLATARALAALGAR-VAIGDLDEA------------------LAKETAAELG------LVVGGPL 57 (273)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEECCHH------------------HHHHHHHHhc------cceEEEc
Confidence 3467899998 589999999999999974 666664321 2222222221 2345666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.++.+++.+... +.+.|++|.+.
T Consensus 58 D~~~~~~~~~~~~~~~~~-------~~~id~li~~a 86 (273)
T PRK07825 58 DVTDPASFAAFLDAVEAD-------LGPIDVLVNNA 86 (273)
T ss_pred cCCCHHHHHHHHHHHHHH-------cCCCCEEEECC
Confidence 777766666665554332 24678888774
No 213
>PRK08303 short chain dehydrogenase; Provisional
Probab=96.14 E-value=0.056 Score=47.65 Aligned_cols=97 Identities=8% Similarity=0.116 Sum_probs=63.2
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
++++.++|.|. +|+|.++++.|++.|. ++.+++.+.-..++. + -...+.+.+++.+... ..++..+..
T Consensus 6 l~~k~~lITGgs~GIG~aia~~la~~G~-~Vv~~~r~~~~~~~~----~----~~~~~~~~~~~~l~~~--~~~~~~~~~ 74 (305)
T PRK08303 6 LRGKVALVAGATRGAGRGIAVELGAAGA-TVYVTGRSTRARRSE----Y----DRPETIEETAELVTAA--GGRGIAVQV 74 (305)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeccccccccc----c----cccchHHHHHHHHHhc--CCceEEEEc
Confidence 56788999985 6999999999999997 677877653211100 0 0112455556666543 334556778
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++.+.+..+.+++.+... +...|++|.+.
T Consensus 75 Dv~~~~~v~~~~~~~~~~-------~g~iDilVnnA 103 (305)
T PRK08303 75 DHLVPEQVRALVERIDRE-------QGRLDILVNDI 103 (305)
T ss_pred CCCCHHHHHHHHHHHHHH-------cCCccEEEECC
Confidence 888888888877654332 34678888765
No 214
>PRK07340 ornithine cyclodeaminase; Validated
Probab=96.12 E-value=0.015 Score=51.54 Aligned_cols=78 Identities=14% Similarity=0.114 Sum_probs=55.9
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHH-hcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTR-CGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~-~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
+...++++|+|+|+.|...+..+.. .|+.++.++|.+.- |++.+++++.+.. +.+. .
T Consensus 122 ~~~~~~v~IiGaG~qa~~~~~al~~~~~~~~v~v~~r~~~------------------~a~~~a~~~~~~~--~~~~--~ 179 (304)
T PRK07340 122 PAPPGDLLLIGTGVQARAHLEAFAAGLPVRRVWVRGRTAA------------------SAAAFCAHARALG--PTAE--P 179 (304)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHhCCCCEEEEEcCCHH------------------HHHHHHHHHHhcC--CeeE--E
Confidence 3456889999999999999999975 68899999886643 8888888887542 2222 1
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHH
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYE 201 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~ 201 (231)
.+.+ ..+.++|+|+.|+-+.+
T Consensus 180 ------~~~~--------------~av~~aDiVitaT~s~~ 200 (304)
T PRK07340 180 ------LDGE--------------AIPEAVDLVVTATTSRT 200 (304)
T ss_pred ------CCHH--------------HHhhcCCEEEEccCCCC
Confidence 1112 12468999999987654
No 215
>PRK05650 short chain dehydrogenase; Provisional
Probab=96.10 E-value=0.05 Score=46.48 Aligned_cols=84 Identities=20% Similarity=0.294 Sum_probs=53.6
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
+|+|.| .||+|..+++.|+..|. ++.+++.+. .+.+.+...+...+.. +.....++++
T Consensus 2 ~vlVtGasggIG~~la~~l~~~g~-~V~~~~r~~------------------~~~~~~~~~l~~~~~~--~~~~~~D~~~ 60 (270)
T PRK05650 2 RVMITGAASGLGRAIALRWAREGW-RLALADVNE------------------EGGEETLKLLREAGGD--GFYQRCDVRD 60 (270)
T ss_pred EEEEecCCChHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCCc--eEEEEccCCC
Confidence 688887 68999999999999997 466665432 1444444555544333 3455666766
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.+.++.++..+... +.++|+||.+..
T Consensus 61 ~~~~~~~~~~i~~~-------~~~id~lI~~ag 86 (270)
T PRK05650 61 YSQLTALAQACEEK-------WGGIDVIVNNAG 86 (270)
T ss_pred HHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 66666655444322 246788887753
No 216
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=96.09 E-value=0.046 Score=46.25 Aligned_cols=88 Identities=19% Similarity=0.242 Sum_probs=56.2
Q ss_pred HHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 81 ERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 81 ~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
.++++++++|.| .||+|.++++.|+..|. +++++|.+. ..+.+.+.+... ..++..+
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~-~v~~~~r~~-------------------~~~~~~~~~~~~--~~~~~~~ 61 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGA-RVVLVDRSE-------------------LVHEVAAELRAA--GGEALAL 61 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCch-------------------HHHHHHHHHHhc--CCeEEEE
Confidence 456788899998 58999999999999997 677777431 111223334333 2345566
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
..++++.+....++..+.. .+..+|++|.+.
T Consensus 62 ~~D~~~~~~~~~~~~~~~~-------~~~~id~lv~nA 92 (260)
T PRK12823 62 TADLETYAGAQAAMAAAVE-------AFGRIDVLINNV 92 (260)
T ss_pred EEeCCCHHHHHHHHHHHHH-------HcCCCeEEEECC
Confidence 6677766666665554332 234678888765
No 217
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=96.08 E-value=0.024 Score=39.61 Aligned_cols=57 Identities=19% Similarity=0.225 Sum_probs=40.2
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEE
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVL 156 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v 156 (231)
||+|||.|-+|+++|..|++.|. +++|++...- +. ....+.=.+.+.+.+++. ++++
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~-~vtli~~~~~--------~~--~~~~~~~~~~~~~~l~~~--gV~v 57 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGK-EVTLIERSDR--------LL--PGFDPDAAKILEEYLRKR--GVEV 57 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTS-EEEEEESSSS--------SS--TTSSHHHHHHHHHHHHHT--TEEE
T ss_pred CEEEECcCHHHHHHHHHHHHhCc-EEEEEeccch--------hh--hhcCHHHHHHHHHHHHHC--CCEE
Confidence 68999999999999999999995 8888875443 11 122333455666777776 4554
No 218
>PRK06057 short chain dehydrogenase; Provisional
Probab=96.08 E-value=0.028 Score=47.59 Aligned_cols=36 Identities=28% Similarity=0.395 Sum_probs=30.1
Q ss_pred HHhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCC
Q 026893 82 RIREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 82 kl~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
++.+++|+|+|+ ||+|.++++.|+..|. +++++|.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~-~v~~~~r~ 40 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGA-TVVVGDID 40 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCC-EEEEEeCC
Confidence 366789999985 9999999999999996 67777644
No 219
>PRK08340 glucose-1-dehydrogenase; Provisional
Probab=96.08 E-value=0.047 Score=46.33 Aligned_cols=82 Identities=13% Similarity=0.255 Sum_probs=53.8
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
+|+|.| .||+|..+++.|++.|. ++.+++.+. .+.+.+.+.+.+. . .+..+..++++
T Consensus 2 ~vlItGas~gIG~aia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~l~~~-~--~~~~~~~Dv~d 59 (259)
T PRK08340 2 NVLVTASSRGIGFNVARELLKKGA-RVVISSRNE------------------ENLEKALKELKEY-G--EVYAVKADLSD 59 (259)
T ss_pred eEEEEcCCcHHHHHHHHHHHHcCC-EEEEEeCCH------------------HHHHHHHHHHHhc-C--CceEEEcCCCC
Confidence 688887 68999999999999997 577766432 1333444444332 1 34566777777
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
.+.+..+++.+... +.+.|+||.+.
T Consensus 60 ~~~~~~~~~~~~~~-------~g~id~li~na 84 (259)
T PRK08340 60 KDDLKNLVKEAWEL-------LGGIDALVWNA 84 (259)
T ss_pred HHHHHHHHHHHHHh-------cCCCCEEEECC
Confidence 67777666554322 34678887764
No 220
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=96.07 E-value=0.053 Score=46.00 Aligned_cols=90 Identities=9% Similarity=0.132 Sum_probs=57.2
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
.+++++++|+| .||+|.++++.|++.|. ++.+..... ..+.+.+.+.+... ..++..+.
T Consensus 4 ~~~~k~~lItGa~~gIG~~ia~~l~~~G~-~vvi~~~~~-----------------~~~~~~~~~~l~~~--~~~~~~~~ 63 (261)
T PRK08936 4 DLEGKVVVITGGSTGLGRAMAVRFGKEKA-KVVINYRSD-----------------EEEANDVAEEIKKA--GGEAIAVK 63 (261)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCC-----------------HHHHHHHHHHHHHc--CCeEEEEE
Confidence 36788999997 78999999999999997 444543211 11334445555443 33455677
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.++++.+.+..+++.+... +.+.|++|.+..
T Consensus 64 ~Dl~~~~~i~~~~~~~~~~-------~g~id~lv~~ag 94 (261)
T PRK08936 64 GDVTVESDVVNLIQTAVKE-------FGTLDVMINNAG 94 (261)
T ss_pred ecCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 7777777766666544322 246788776653
No 221
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.07 E-value=0.11 Score=46.30 Aligned_cols=108 Identities=11% Similarity=0.129 Sum_probs=68.6
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
+++|+|.|+|.+|-.....+-..|.+++.+.|-..- |.+.+++ + +.++......-
T Consensus 170 Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~------------------Rle~Ak~-~-----Ga~~~~~~~~~- 224 (354)
T KOG0024|consen 170 GSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVAN------------------RLELAKK-F-----GATVTDPSSHK- 224 (354)
T ss_pred CCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHH------------------HHHHHHH-h-----CCeEEeecccc-
Confidence 789999999999999988888899999999884433 5555544 2 22211111111
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
...+.+.+.++..- .-..+|++|+|+............++..|. ++-+|++..
T Consensus 225 --~~~~~~~~~v~~~~-----g~~~~d~~~dCsG~~~~~~aai~a~r~gGt-~vlvg~g~~ 277 (354)
T KOG0024|consen 225 --SSPQELAELVEKAL-----GKKQPDVTFDCSGAEVTIRAAIKATRSGGT-VVLVGMGAE 277 (354)
T ss_pred --ccHHHHHHHHHhhc-----cccCCCeEEEccCchHHHHHHHHHhccCCE-EEEeccCCC
Confidence 12233333322211 113599999999887776666777777777 666665543
No 222
>PRK08278 short chain dehydrogenase; Provisional
Probab=96.07 E-value=0.056 Score=46.44 Aligned_cols=95 Identities=11% Similarity=0.132 Sum_probs=60.7
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++|.| .||+|..+++.|+..|. ++.+++...-...++ ..+.+.+++.+... ..++..+..
T Consensus 4 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~~~~~~~~-----------~~~l~~~~~~~~~~--~~~~~~~~~ 69 (273)
T PRK08278 4 LSGKTLFITGASRGIGLAIALRAARDGA-NIVIAAKTAEPHPKL-----------PGTIHTAAEEIEAA--GGQALPLVG 69 (273)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEecccccccch-----------hhHHHHHHHHHHhc--CCceEEEEe
Confidence 4567899998 68999999999999997 688877543211000 11334445555543 234557777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+..++..+.. .+..+|+||.+..
T Consensus 70 D~~~~~~i~~~~~~~~~-------~~g~id~li~~ag 99 (273)
T PRK08278 70 DVRDEDQVAAAVAKAVE-------RFGGIDICVNNAS 99 (273)
T ss_pred cCCCHHHHHHHHHHHHH-------HhCCCCEEEECCC
Confidence 88877777766654322 1246888887653
No 223
>PRK11880 pyrroline-5-carboxylate reductase; Reviewed
Probab=96.07 E-value=0.043 Score=47.16 Aligned_cols=33 Identities=18% Similarity=0.319 Sum_probs=27.4
Q ss_pred CcEEEEecCchHHHHHHHHHHhcC--ceEEEEeCC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGI--GRLLLYDYD 118 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv--~~i~LiD~D 118 (231)
.+|.|||+|.+|+.++..|.+.|. .++.++|.+
T Consensus 3 m~I~iIG~G~mG~~la~~l~~~g~~~~~v~v~~r~ 37 (267)
T PRK11880 3 KKIGFIGGGNMASAIIGGLLASGVPAKDIIVSDPS 37 (267)
T ss_pred CEEEEEechHHHHHHHHHHHhCCCCcceEEEEcCC
Confidence 479999999999999999999884 466776643
No 224
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=96.06 E-value=0.039 Score=52.75 Aligned_cols=88 Identities=18% Similarity=0.188 Sum_probs=57.9
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
+.+|+|+|+|.+|..+++.|...|. +++++|.|.- |++.++ +. +.. .+..+.+
T Consensus 417 ~~hiiI~G~G~~G~~la~~L~~~g~-~vvvId~d~~------------------~~~~~~----~~--g~~--~i~GD~~ 469 (558)
T PRK10669 417 CNHALLVGYGRVGSLLGEKLLAAGI-PLVVIETSRT------------------RVDELR----ER--GIR--AVLGNAA 469 (558)
T ss_pred CCCEEEECCChHHHHHHHHHHHCCC-CEEEEECCHH------------------HHHHHH----HC--CCe--EEEcCCC
Confidence 4689999999999999999999996 7899997754 433332 22 222 5555666
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHH
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNE 212 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~ 212 (231)
+.+.+++ ..++++|.|+.++++......+...+++
T Consensus 470 ~~~~L~~-------------a~i~~a~~viv~~~~~~~~~~iv~~~~~ 504 (558)
T PRK10669 470 NEEIMQL-------------AHLDCARWLLLTIPNGYEAGEIVASARE 504 (558)
T ss_pred CHHHHHh-------------cCccccCEEEEEcCChHHHHHHHHHHHH
Confidence 5444432 3567899888777665444334333443
No 225
>PRK08226 short chain dehydrogenase; Provisional
Probab=96.06 E-value=0.043 Score=46.49 Aligned_cols=88 Identities=15% Similarity=0.297 Sum_probs=55.9
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
++.+++++|.| .||+|..+++.|+..|. ++++++.+. +.....+.+.+. +.++..+.
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~-~Vv~~~r~~-------------------~~~~~~~~~~~~--~~~~~~~~ 60 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGA-NLILLDISP-------------------EIEKLADELCGR--GHRCTAVV 60 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEecCCH-------------------HHHHHHHHHHHh--CCceEEEE
Confidence 35678899997 88999999999999997 477776431 111222233322 33455667
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.++++.+.++.++..+... +...|+||.+..
T Consensus 61 ~Dl~~~~~v~~~~~~~~~~-------~~~id~vi~~ag 91 (263)
T PRK08226 61 ADVRDPASVAAAIKRAKEK-------EGRIDILVNNAG 91 (263)
T ss_pred CCCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 7777767777666554322 246777777543
No 226
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=96.02 E-value=0.053 Score=45.84 Aligned_cols=98 Identities=10% Similarity=0.202 Sum_probs=61.0
Q ss_pred HhcCcEEEEecC---chHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 83 IREFSVAIVGVG---GVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 83 l~~~~V~IvG~G---gvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
+++++|+|.|++ |+|..+++.|+..|. ++.+++....+.. . ..+........+.+.+... ..+++.+
T Consensus 3 l~~k~vlItGas~~~giG~~la~~l~~~G~-~vi~~~r~~~~~~-~------~~~~~~~~~~~~~~~~~~~--~~~~~~~ 72 (256)
T PRK12748 3 LMKKIALVTGASRLNGIGAAVCRRLAAKGI-DIFFTYWSPYDKT-M------PWGMHDKEPVLLKEEIESY--GVRCEHM 72 (256)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHHcCC-cEEEEcCCccccc-c------ccccchhhHHHHHHHHHhc--CCeEEEE
Confidence 456789999984 799999999999997 7888776433211 0 0000111222244444433 3356677
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
..++.+.+.+..+++.+... +..+|+||.+.
T Consensus 73 ~~D~~~~~~~~~~~~~~~~~-------~g~id~vi~~a 103 (256)
T PRK12748 73 EIDLSQPYAPNRVFYAVSER-------LGDPSILINNA 103 (256)
T ss_pred ECCCCCHHHHHHHHHHHHHh-------CCCCCEEEECC
Confidence 88888777777766654432 24688888875
No 227
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=96.02 E-value=0.059 Score=47.44 Aligned_cols=89 Identities=20% Similarity=0.385 Sum_probs=63.1
Q ss_pred HHHHHhcCcEEEEecC-chHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEE
Q 026893 79 NYERIREFSVAIVGVG-GVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLE 157 (231)
Q Consensus 79 ~~~kl~~~~V~IvG~G-gvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~ 157 (231)
-++.+++..|+|-|.| |+|-++|..+|+-|. ++.+.|-..- =.+...+.++++ + +++
T Consensus 32 ~~k~v~g~~vLITGgg~GlGr~ialefa~rg~-~~vl~Din~~------------------~~~etv~~~~~~--g-~~~ 89 (300)
T KOG1201|consen 32 PLKSVSGEIVLITGGGSGLGRLIALEFAKRGA-KLVLWDINKQ------------------GNEETVKEIRKI--G-EAK 89 (300)
T ss_pred chhhccCCEEEEeCCCchHHHHHHHHHHHhCC-eEEEEecccc------------------chHHHHHHHHhc--C-cee
Confidence 4667788899999865 999999999999998 8888773322 233344455554 2 667
Q ss_pred EEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEc
Q 026893 158 SFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSC 196 (231)
Q Consensus 158 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~ 196 (231)
.+..++++.+++.....+++.. ..+.|++|+.
T Consensus 90 ~y~cdis~~eei~~~a~~Vk~e-------~G~V~ILVNN 121 (300)
T KOG1201|consen 90 AYTCDISDREEIYRLAKKVKKE-------VGDVDILVNN 121 (300)
T ss_pred EEEecCCCHHHHHHHHHHHHHh-------cCCceEEEec
Confidence 8888888777777666665543 3677887754
No 228
>TIGR01289 LPOR light-dependent protochlorophyllide reductase. This model represents the light-dependent, NADPH-dependent form of protochlorophyllide reductase. It belongs to the short chain alcohol dehydrogenase family, in contrast to the nitrogenase-related light-independent form.
Probab=96.01 E-value=0.056 Score=47.66 Aligned_cols=87 Identities=22% Similarity=0.362 Sum_probs=55.9
Q ss_pred hcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 84 REFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 84 ~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
.+++++|.|+ +|+|.++++.|++.|..++.+++.+. .+.+.+++.+.. +...+..+..+
T Consensus 2 ~~k~vlITGas~GIG~aia~~L~~~G~~~V~l~~r~~------------------~~~~~~~~~l~~--~~~~~~~~~~D 61 (314)
T TIGR01289 2 QKPTVIITGASSGLGLYAAKALAATGEWHVIMACRDF------------------LKAEQAAKSLGM--PKDSYTIMHLD 61 (314)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCCEEEEEeCCH------------------HHHHHHHHHhcC--CCCeEEEEEcC
Confidence 3567888885 68999999999999955777766432 133334444432 33455567777
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+++.+.+..+++.+... +...|++|.+.
T Consensus 62 l~~~~~v~~~~~~~~~~-------~~~iD~lI~nA 89 (314)
T TIGR01289 62 LGSLDSVRQFVQQFRES-------GRPLDALVCNA 89 (314)
T ss_pred CCCHHHHHHHHHHHHHh-------CCCCCEEEECC
Confidence 77777777776654332 24567777653
No 229
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=96.01 E-value=0.057 Score=43.19 Aligned_cols=87 Identities=18% Similarity=0.234 Sum_probs=58.4
Q ss_pred EEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccCc
Q 026893 88 VAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTV 166 (231)
Q Consensus 88 V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~ 166 (231)
|+|+|+ |.+|..+++.|.+.| .+++.+=.+.- |.+. .+.++ ....++.+.
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~-~~V~~~~R~~~------------------~~~~--------~~~~~--~~~~d~~d~ 51 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRG-HEVTALVRSPS------------------KAED--------SPGVE--IIQGDLFDP 51 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTT-SEEEEEESSGG------------------GHHH--------CTTEE--EEESCTTCH
T ss_pred eEEECCCChHHHHHHHHHHHCC-CEEEEEecCch------------------hccc--------ccccc--cceeeehhh
Confidence 789996 999999999999999 56666322111 2222 45555 566666655
Q ss_pred cchHHHHhhhhccCCCCCCCCCCCcEEEEccCC----HHHHHHHHHHHHHcCCcE
Q 026893 167 QGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDN----YEARMAVNQACNELNQTW 217 (231)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~----~~~r~~i~~~~~~~~~p~ 217 (231)
+.+.. .+.++|.||.|... ...-..+.+.|.+.+++-
T Consensus 52 ~~~~~--------------al~~~d~vi~~~~~~~~~~~~~~~~~~a~~~~~~~~ 92 (183)
T PF13460_consen 52 DSVKA--------------ALKGADAVIHAAGPPPKDVDAAKNIIEAAKKAGVKR 92 (183)
T ss_dssp HHHHH--------------HHTTSSEEEECCHSTTTHHHHHHHHHHHHHHTTSSE
T ss_pred hhhhh--------------hhhhcchhhhhhhhhccccccccccccccccccccc
Confidence 44443 24589999999863 334467788888888753
No 230
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=96.01 E-value=0.039 Score=48.00 Aligned_cols=33 Identities=18% Similarity=0.442 Sum_probs=29.5
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
.+|+|||+|-+|+.++..|++.|. +++++|.+.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~-~V~~~d~~~ 36 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGY-DVVMVDISD 36 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCC-ceEEEeCCH
Confidence 479999999999999999999997 889988653
No 231
>PRK05855 short chain dehydrogenase; Validated
Probab=96.01 E-value=0.039 Score=52.00 Aligned_cols=90 Identities=17% Similarity=0.303 Sum_probs=63.7
Q ss_pred HHHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEE
Q 026893 80 YERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLES 158 (231)
Q Consensus 80 ~~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~ 158 (231)
...+++.+++|+| .||+|.++++.|+..|.. +.+++.+. .+.+.+++.+..... .+..
T Consensus 310 ~~~~~~~~~lv~G~s~giG~~~a~~l~~~G~~-v~~~~r~~------------------~~~~~~~~~~~~~~~--~~~~ 368 (582)
T PRK05855 310 RGPFSGKLVVVTGAGSGIGRETALAFAREGAE-VVASDIDE------------------AAAERTAELIRAAGA--VAHA 368 (582)
T ss_pred cccCCCCEEEEECCcCHHHHHHHHHHHHCCCE-EEEEeCCH------------------HHHHHHHHHHHhcCC--eEEE
Confidence 3456778899998 599999999999999985 77766432 255555666655433 5667
Q ss_pred EeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 159 FTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+..++++.+....+++.+... +...|+||.+.
T Consensus 369 ~~~Dv~~~~~~~~~~~~~~~~-------~g~id~lv~~A 400 (582)
T PRK05855 369 YRVDVSDADAMEAFAEWVRAE-------HGVPDIVVNNA 400 (582)
T ss_pred EEcCCCCHHHHHHHHHHHHHh-------cCCCcEEEECC
Confidence 788888877777776654322 24688888875
No 232
>PRK12743 oxidoreductase; Provisional
Probab=96.01 E-value=0.055 Score=45.85 Aligned_cols=87 Identities=11% Similarity=0.152 Sum_probs=54.9
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
.++|+|.| .||+|..+++.|+..|.. +.+++... ..+.+.+.+.+.... .+++.+..++
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~-V~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~Dl 61 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFD-IGITWHSD-----------------EEGAKETAEEVRSHG--VRAEIRQLDL 61 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCC-----------------hHHHHHHHHHHHhcC--CceEEEEccC
Confidence 45788887 679999999999999974 44432110 113444445554442 3455677777
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.++.+++.+... +...|+||.|..
T Consensus 62 ~~~~~~~~~~~~~~~~-------~~~id~li~~ag 89 (256)
T PRK12743 62 SDLPEGAQALDKLIQR-------LGRIDVLVNNAG 89 (256)
T ss_pred CCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 7777777666554332 246788887653
No 233
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=96.01 E-value=0.025 Score=50.14 Aligned_cols=32 Identities=44% Similarity=0.578 Sum_probs=29.5
Q ss_pred cEEEEecCchHHHHHHHHHHhcC-ceEEEEeCC
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGI-GRLLLYDYD 118 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv-~~i~LiD~D 118 (231)
+|.|||+|.+|+.++..|+..|+ .++.|+|.+
T Consensus 2 kI~IIGaG~VG~~~a~~l~~~g~~~ev~l~D~~ 34 (308)
T cd05292 2 KVAIVGAGFVGSTTAYALLLRGLASEIVLVDIN 34 (308)
T ss_pred EEEEECCCHHHHHHHHHHHHcCCCCEEEEEECC
Confidence 69999999999999999999996 789999964
No 234
>PRK12937 short chain dehydrogenase; Provisional
Probab=96.01 E-value=0.044 Score=45.70 Aligned_cols=89 Identities=10% Similarity=0.179 Sum_probs=56.0
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++|+|.| .|++|..+++.|++.|.. +.++....- .+.+.+.+.+.... .++..+..
T Consensus 3 ~~~~~vlItG~~~~iG~~la~~l~~~g~~-v~~~~~~~~-----------------~~~~~~~~~~~~~~--~~~~~~~~ 62 (245)
T PRK12937 3 LSNKVAIVTGASRGIGAAIARRLAADGFA-VAVNYAGSA-----------------AAADELVAEIEAAG--GRAIAVQA 62 (245)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEecCCCH-----------------HHHHHHHHHHHhcC--CeEEEEEC
Confidence 3567899998 699999999999999984 444332111 12333444554443 34556777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+.++.+++.+.. .+.+.|+||.+..
T Consensus 63 Dl~~~~~~~~~~~~~~~-------~~~~id~vi~~ag 92 (245)
T PRK12937 63 DVADAAAVTRLFDAAET-------AFGRIDVLVNNAG 92 (245)
T ss_pred CCCCHHHHHHHHHHHHH-------HcCCCCEEEECCC
Confidence 77776666666554322 2346788887654
No 235
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=96.00 E-value=0.037 Score=49.17 Aligned_cols=30 Identities=27% Similarity=0.543 Sum_probs=26.4
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEe
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYD 116 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD 116 (231)
.+|+|+|+|++||..+-.|++.| ..++++-
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g-~~V~~~~ 30 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAG-HDVTLLV 30 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCC-CeEEEEe
Confidence 37999999999999999999999 7776644
No 236
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=96.00 E-value=0.038 Score=46.96 Aligned_cols=34 Identities=21% Similarity=0.406 Sum_probs=28.3
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeC
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
+++++++|.| .||+|..+++.|++.|. ++.++|.
T Consensus 3 ~~~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r 37 (262)
T TIGR03325 3 LKGEVVLVTGGASGLGRAIVDRFVAEGA-RVAVLDK 37 (262)
T ss_pred cCCcEEEEECCCChHHHHHHHHHHHCCC-EEEEEeC
Confidence 4578899998 57999999999999997 5777664
No 237
>PRK07791 short chain dehydrogenase; Provisional
Probab=96.00 E-value=0.047 Score=47.40 Aligned_cols=97 Identities=16% Similarity=0.213 Sum_probs=61.3
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
.+.+++++|.| .+|+|..+++.|++.|. ++.++|.+.- .....-+..+.+.+.+.+... ..++..+.
T Consensus 3 ~l~~k~~lITGas~GIG~aia~~la~~G~-~vii~~~~~~---------~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~ 70 (286)
T PRK07791 3 LLDGRVVIVTGAGGGIGRAHALAFAAEGA-RVVVNDIGVG---------LDGSASGGSAAQAVVDEIVAA--GGEAVANG 70 (286)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEeeCCcc---------ccccccchhHHHHHHHHHHhc--CCceEEEe
Confidence 35677888887 67999999999999997 5666664320 000011123455555555543 23455677
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
.++++.+....+++.+.. .+...|++|.+.
T Consensus 71 ~Dv~~~~~v~~~~~~~~~-------~~g~id~lv~nA 100 (286)
T PRK07791 71 DDIADWDGAANLVDAAVE-------TFGGLDVLVNNA 100 (286)
T ss_pred CCCCCHHHHHHHHHHHHH-------hcCCCCEEEECC
Confidence 788887777777665432 235788888764
No 238
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.99 E-value=0.055 Score=44.86 Aligned_cols=86 Identities=13% Similarity=0.250 Sum_probs=55.1
Q ss_pred hcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 84 REFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 84 ~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
.+++|+|.| .|++|..+++.|+..|.. +.+++.+.- +.+.+...+.... .++..+..+
T Consensus 4 ~~~~ilItGasg~iG~~l~~~l~~~g~~-v~~~~r~~~------------------~~~~~~~~~~~~~--~~~~~~~~D 62 (246)
T PRK05653 4 QGKTALVTGASRGIGRAIALRLAADGAK-VVIYDSNEE------------------AAEALAAELRAAG--GEARVLVFD 62 (246)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCE-EEEEeCChh------------------HHHHHHHHHHhcC--CceEEEEcc
Confidence 456899998 689999999999999986 777775532 3333344444332 344556666
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+.+.+.+...+..+.. .+.++|.||.+.
T Consensus 63 ~~~~~~~~~~~~~~~~-------~~~~id~vi~~a 90 (246)
T PRK05653 63 VSDEAAVRALIEAAVE-------AFGALDILVNNA 90 (246)
T ss_pred CCCHHHHHHHHHHHHH-------HhCCCCEEEECC
Confidence 7666666555543321 124678888776
No 239
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=95.98 E-value=0.032 Score=49.18 Aligned_cols=34 Identities=32% Similarity=0.529 Sum_probs=30.0
Q ss_pred CcEEEEecCchHHHHHHHHHHhcC-ceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGI-GRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv-~~i~LiD~D~ 119 (231)
.+|+|||+|.+|+.++..|.+.|. .+++++|.+.
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~ 41 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSA 41 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCH
Confidence 579999999999999999999997 4788988653
No 240
>PRK08862 short chain dehydrogenase; Provisional
Probab=95.98 E-value=0.048 Score=45.83 Aligned_cols=87 Identities=15% Similarity=0.233 Sum_probs=57.2
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.| .+|+|..+++.|+..|. ++.+++.+. .+.+.+.+.+.+... ++..+..
T Consensus 3 ~~~k~~lVtGas~GIG~aia~~la~~G~-~V~~~~r~~------------------~~l~~~~~~i~~~~~--~~~~~~~ 61 (227)
T PRK08862 3 IKSSIILITSAGSVLGRTISCHFARLGA-TLILCDQDQ------------------SALKDTYEQCSALTD--NVYSFQL 61 (227)
T ss_pred CCCeEEEEECCccHHHHHHHHHHHHCCC-EEEEEcCCH------------------HHHHHHHHHHHhcCC--CeEEEEc
Confidence 4567899998 55899999999999997 476665432 244444555555433 3446666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCC-CCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGS-GVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~DiVi~~~ 197 (231)
++.+.+.+..+++.+... +. ..|++|.+.
T Consensus 62 D~~~~~~~~~~~~~~~~~-------~g~~iD~li~na 91 (227)
T PRK08862 62 KDFSQESIRHLFDAIEQQ-------FNRAPDVLVNNW 91 (227)
T ss_pred cCCCHHHHHHHHHHHHHH-------hCCCCCEEEECC
Confidence 677767777776554332 23 678888775
No 241
>PRK08324 short chain dehydrogenase; Validated
Probab=95.97 E-value=0.09 Score=51.54 Aligned_cols=87 Identities=22% Similarity=0.279 Sum_probs=57.8
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++|+|.| .||+|..+++.|+..|. +++++|.+.- +.+.+.+.+... ..+..+..
T Consensus 420 l~gk~vLVTGasggIG~~la~~L~~~Ga-~Vvl~~r~~~------------------~~~~~~~~l~~~---~~v~~v~~ 477 (681)
T PRK08324 420 LAGKVALVTGAAGGIGKATAKRLAAEGA-CVVLADLDEE------------------AAEAAAAELGGP---DRALGVAC 477 (681)
T ss_pred CCCCEEEEecCCCHHHHHHHHHHHHCcC-EEEEEeCCHH------------------HHHHHHHHHhcc---CcEEEEEe
Confidence 3557899999 69999999999999997 7888875431 333333333322 34556667
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+...++.+.. .+.++|+||.|..
T Consensus 478 Dvtd~~~v~~~~~~~~~-------~~g~iDvvI~~AG 507 (681)
T PRK08324 478 DVTDEAAVQAAFEEAAL-------AFGGVDIVVSNAG 507 (681)
T ss_pred cCCCHHHHHHHHHHHHH-------HcCCCCEEEECCC
Confidence 77766666655544322 2347899998875
No 242
>PRK07454 short chain dehydrogenase; Provisional
Probab=95.97 E-value=0.063 Score=44.83 Aligned_cols=86 Identities=15% Similarity=0.251 Sum_probs=56.1
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
.++++|.| .|++|..+++.|++.|. ++++++.+. .+.+.+.+.+.+. +..+..+..++
T Consensus 6 ~k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~~~D~ 64 (241)
T PRK07454 6 MPRALITGASSGIGKATALAFAKAGW-DLALVARSQ------------------DALEALAAELRST--GVKAAAYSIDL 64 (241)
T ss_pred CCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhC--CCcEEEEEccC
Confidence 45788888 58999999999999997 788877532 1333344444443 23455667777
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+..+++.+... +.+.|+||.|..
T Consensus 65 ~~~~~~~~~~~~~~~~-------~~~id~lv~~ag 92 (241)
T PRK07454 65 SNPEAIAPGIAELLEQ-------FGCPDVLINNAG 92 (241)
T ss_pred CCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 7766666655443221 246899888764
No 243
>PLN02206 UDP-glucuronate decarboxylase
Probab=95.96 E-value=0.062 Score=50.02 Aligned_cols=35 Identities=26% Similarity=0.388 Sum_probs=28.8
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeC
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
+-++++|+|.| .|-+|+++++.|...|. +++.+|.
T Consensus 116 ~~~~~kILVTGatGfIGs~Lv~~Ll~~G~-~V~~ld~ 151 (442)
T PLN02206 116 KRKGLRVVVTGGAGFVGSHLVDRLMARGD-SVIVVDN 151 (442)
T ss_pred ccCCCEEEEECcccHHHHHHHHHHHHCcC-EEEEEeC
Confidence 44568999998 69999999999999986 5666664
No 244
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.92 E-value=0.011 Score=51.55 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=29.6
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
.+|+|+|+|..|+.+|..|++.|. +++++|.+.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGF-DVTIYDISD 36 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999996 799999653
No 245
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=95.91 E-value=0.054 Score=45.36 Aligned_cols=88 Identities=9% Similarity=0.153 Sum_probs=53.1
Q ss_pred hcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 84 REFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 84 ~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
+++.++|.| .|++|..+++.|++.|..-+.+.+.+. .+.+...+.+... ...+..+..+
T Consensus 2 ~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~~~~------------------~~~~~~~~~~~~~--~~~~~~~~~D 61 (246)
T PRK12938 2 SQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCGPNS------------------PRRVKWLEDQKAL--GFDFIASEGN 61 (246)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCCh------------------HHHHHHHHHHHhc--CCcEEEEEcC
Confidence 456788887 699999999999999975333222111 0112222333332 3445566777
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
+.+.+.+..++..+.+. +.+.|+||.|..
T Consensus 62 ~~~~~~~~~~~~~~~~~-------~~~id~li~~ag 90 (246)
T PRK12938 62 VGDWDSTKAAFDKVKAE-------VGEIDVLVNNAG 90 (246)
T ss_pred CCCHHHHHHHHHHHHHH-------hCCCCEEEECCC
Confidence 77766666665543322 257888888764
No 246
>PRK07904 short chain dehydrogenase; Provisional
Probab=95.91 E-value=0.099 Score=44.48 Aligned_cols=87 Identities=15% Similarity=0.259 Sum_probs=54.0
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
.++|+|.| .||+|.++++.|+..|--++.+++.+.- .+.+.+.+.+...+ ..+++.+..++
T Consensus 8 ~~~vlItGas~giG~~la~~l~~~gg~~V~~~~r~~~-----------------~~~~~~~~~l~~~~-~~~v~~~~~D~ 69 (253)
T PRK07904 8 PQTILLLGGTSEIGLAICERYLKNAPARVVLAALPDD-----------------PRRDAAVAQMKAAG-ASSVEVIDFDA 69 (253)
T ss_pred CcEEEEEcCCcHHHHHHHHHHHhcCCCeEEEEeCCcc-----------------hhHHHHHHHHHhcC-CCceEEEEecC
Confidence 44688887 7899999999999986457778764432 12344445555543 22455677777
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
.+.+....+++.+.. ..+.|++|.+.
T Consensus 70 ~~~~~~~~~~~~~~~--------~g~id~li~~a 95 (253)
T PRK07904 70 LDTDSHPKVIDAAFA--------GGDVDVAIVAF 95 (253)
T ss_pred CChHHHHHHHHHHHh--------cCCCCEEEEee
Confidence 766666555544322 13678777554
No 247
>PF01210 NAD_Gly3P_dh_N: NAD-dependent glycerol-3-phosphate dehydrogenase N-terminus; InterPro: IPR011128 NAD-dependent glycerol-3-phosphate dehydrogenase (GPDH) catalyses the interconversion of dihydroxyacetone phosphate and L-glycerol-3-phosphate. This family represents the N-terminal NAD-binding domain [].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0046168 glycerol-3-phosphate catabolic process, 0055114 oxidation-reduction process, 0005737 cytoplasm; PDB: 1YJ8_B 2PLA_A 1WPQ_B 1X0V_A 1X0X_A 1BG6_A 1TXG_B 1N1G_A 1M67_A 1JDJ_A ....
Probab=95.90 E-value=0.02 Score=45.64 Aligned_cols=97 Identities=21% Similarity=0.340 Sum_probs=55.3
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHH--hhCCCcEEEEEeeccc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLA--DINPDVVLESFTLNIT 164 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~--~~np~v~v~~~~~~i~ 164 (231)
||+|+|+|..|+.+|..|+..| .+++|+..+.= .++.+.+.=. ...|++.+.. ++.
T Consensus 1 KI~ViGaG~~G~AlA~~la~~g-~~V~l~~~~~~------------------~~~~i~~~~~n~~~~~~~~l~~---~i~ 58 (157)
T PF01210_consen 1 KIAVIGAGNWGTALAALLADNG-HEVTLWGRDEE------------------QIEEINETRQNPKYLPGIKLPE---NIK 58 (157)
T ss_dssp EEEEESSSHHHHHHHHHHHHCT-EEEEEETSCHH------------------HHHHHHHHTSETTTSTTSBEET---TEE
T ss_pred CEEEECcCHHHHHHHHHHHHcC-CEEEEEeccHH------------------HHHHHHHhCCCCCCCCCcccCc---ccc
Confidence 6899999999999999999999 78888876652 2222222100 1123333211 111
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHH--HcCCcEEE
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACN--ELNQTWME 219 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~--~~~~p~i~ 219 (231)
-..+++. .+++.|+|+.++-+...+..+.+... +.+.+++.
T Consensus 59 ~t~dl~~--------------a~~~ad~IiiavPs~~~~~~~~~l~~~l~~~~~ii~ 101 (157)
T PF01210_consen 59 ATTDLEE--------------ALEDADIIIIAVPSQAHREVLEQLAPYLKKGQIIIS 101 (157)
T ss_dssp EESSHHH--------------HHTT-SEEEE-S-GGGHHHHHHHHTTTSHTT-EEEE
T ss_pred cccCHHH--------------HhCcccEEEecccHHHHHHHHHHHhhccCCCCEEEE
Confidence 1123322 23688999999998877766555543 34555554
No 248
>PRK06141 ornithine cyclodeaminase; Validated
Probab=95.89 E-value=0.025 Score=50.30 Aligned_cols=51 Identities=22% Similarity=0.256 Sum_probs=39.8
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHH-hcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhh
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTR-CGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADI 150 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~-~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~ 150 (231)
+...++|+|+|+|+.|...+..+.. .++.++++++.+. .|++.+++.+.+.
T Consensus 122 ~~~~~~v~iiG~G~~a~~~~~al~~~~~~~~V~V~~Rs~------------------~~a~~~a~~~~~~ 173 (314)
T PRK06141 122 RKDASRLLVVGTGRLASLLALAHASVRPIKQVRVWGRDP------------------AKAEALAAELRAQ 173 (314)
T ss_pred CCCCceEEEECCcHHHHHHHHHHHhcCCCCEEEEEcCCH------------------HHHHHHHHHHHhc
Confidence 4456899999999999999987765 6889999987543 2777777777653
No 249
>PF08659 KR: KR domain; InterPro: IPR013968 This domain is found in bacterial polyketide synthases that catalyse the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group. ; PDB: 3QP9_D 2FR0_A 2FR1_A 2Z5L_A 3SLK_B 3MJE_B 3MJC_A 3MJT_B 3MJV_A 3MJS_B ....
Probab=95.89 E-value=0.08 Score=42.97 Aligned_cols=87 Identities=23% Similarity=0.368 Sum_probs=58.4
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
.++|+| .||+|..+++.|+..|..+|.|+-... ....+.+...+.+.+. +.+|..+..++++
T Consensus 2 tylitGG~gglg~~la~~La~~~~~~~il~~r~~---------------~~~~~~~~~i~~l~~~--g~~v~~~~~Dv~d 64 (181)
T PF08659_consen 2 TYLITGGLGGLGQSLARWLAERGARRLILLGRSG---------------APSAEAEAAIRELESA--GARVEYVQCDVTD 64 (181)
T ss_dssp EEEEETTTSHHHHHHHHHHHHTT-SEEEEEESSG---------------GGSTTHHHHHHHHHHT--T-EEEEEE--TTS
T ss_pred EEEEECCccHHHHHHHHHHHHcCCCEEEEeccCC---------------CccHHHHHHHHHHHhC--CCceeeeccCccC
Confidence 467885 999999999999999999999965442 2223444455666664 6688888889998
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
.+.+...++.+... ..+.+.||-|.
T Consensus 65 ~~~v~~~~~~~~~~-------~~~i~gVih~a 89 (181)
T PF08659_consen 65 PEAVAAALAQLRQR-------FGPIDGVIHAA 89 (181)
T ss_dssp HHHHHHHHHTSHTT-------SS-EEEEEE--
T ss_pred HHHHHHHHHHHHhc-------cCCcceeeeee
Confidence 88888887665433 25777788665
No 250
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=95.86 E-value=0.091 Score=47.34 Aligned_cols=96 Identities=20% Similarity=0.211 Sum_probs=60.9
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
..+|+|+|+|.+|--.+..+...|.+++.++|.+.- |.+.+++.... .+. ... -.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~------------------Rl~~A~~~~g~---~~~--~~~--~~ 223 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPE------------------RLELAKEAGGA---DVV--VNP--SE 223 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHH------------------HHHHHHHhCCC---eEe--ecC--cc
Confidence 338999999999999999999999999999986554 44444432211 111 000 00
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCC
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQ 215 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~ 215 (231)
+ +......+ . ....++|+||+|+.+..+.....++++..|.
T Consensus 224 ~-~~~~~~~~---~------t~g~g~D~vie~~G~~~~~~~ai~~~r~gG~ 264 (350)
T COG1063 224 D-DAGAEILE---L------TGGRGADVVIEAVGSPPALDQALEALRPGGT 264 (350)
T ss_pred c-cHHHHHHH---H------hCCCCCCEEEECCCCHHHHHHHHHHhcCCCE
Confidence 0 11111100 0 1124799999999988877777788777654
No 251
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=95.86 E-value=0.052 Score=46.10 Aligned_cols=35 Identities=20% Similarity=0.325 Sum_probs=29.0
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++++++|.| .||+|.++++.|+..|. ++.++|.+
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~-~V~~~~r~ 39 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGA-RVAVLERS 39 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5678899998 57999999999999997 57777754
No 252
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=95.84 E-value=0.072 Score=44.62 Aligned_cols=84 Identities=15% Similarity=0.289 Sum_probs=54.6
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
++|+|.| .|++|+.+++.|+..|. ++++++.+.- +.+.+.+.+... ..++..+..++.
T Consensus 2 ~~vlItGa~g~lG~~l~~~l~~~g~-~v~~~~r~~~------------------~~~~~~~~~~~~--~~~~~~~~~D~~ 60 (255)
T TIGR01963 2 KTALVTGAASGIGLAIALALAAAGA-NVVVNDLGEA------------------GAEAAAKVATDA--GGSVIYLVADVT 60 (255)
T ss_pred CEEEEcCCcchHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHHHHhc--CCceEEEECCCC
Confidence 4788998 78999999999999998 7888775421 333333444332 234556667777
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+.+.+..+++.+... +.+.|+||.+.
T Consensus 61 ~~~~~~~~~~~~~~~-------~~~~d~vi~~a 86 (255)
T TIGR01963 61 KEDEIADMIAAAAAE-------FGGLDILVNNA 86 (255)
T ss_pred CHHHHHHHHHHHHHh-------cCCCCEEEECC
Confidence 666666655544322 34678877665
No 253
>PRK12828 short chain dehydrogenase; Provisional
Probab=95.84 E-value=0.057 Score=44.63 Aligned_cols=36 Identities=33% Similarity=0.495 Sum_probs=30.3
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
+++++++|.| .|++|..+++.|+..|. +++++|.+.
T Consensus 5 ~~~k~vlItGatg~iG~~la~~l~~~G~-~v~~~~r~~ 41 (239)
T PRK12828 5 LQGKVVAITGGFGGLGRATAAWLAARGA-RVALIGRGA 41 (239)
T ss_pred CCCCEEEEECCCCcHhHHHHHHHHHCCC-eEEEEeCCh
Confidence 5678999998 69999999999999997 488887653
No 254
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=95.81 E-value=0.038 Score=48.31 Aligned_cols=32 Identities=28% Similarity=0.460 Sum_probs=29.2
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
++|+|||+|..|+.++..|++.|. +++++|.+
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~-~V~l~d~~ 36 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGY-DVLLNDVS 36 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 579999999999999999999996 78899865
No 255
>KOG1205 consensus Predicted dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.81 E-value=0.07 Score=46.82 Aligned_cols=93 Identities=17% Similarity=0.238 Sum_probs=68.2
Q ss_pred HHHHHHhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEE
Q 026893 78 ENYERIREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVL 156 (231)
Q Consensus 78 ~~~~kl~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v 156 (231)
...+++.++.|+|-|+ .|+|.++|..|++.|.+-+.++= -..+.+.+++.+++..|.-++
T Consensus 5 ~~~e~~~~kvVvITGASsGIG~~lA~~la~~G~~l~lvar-------------------~~rrl~~v~~~l~~~~~~~~v 65 (282)
T KOG1205|consen 5 LFMERLAGKVVLITGASSGIGEALAYELAKRGAKLVLVAR-------------------RARRLERVAEELRKLGSLEKV 65 (282)
T ss_pred ccHHHhCCCEEEEeCCCcHHHHHHHHHHHhCCCceEEeeh-------------------hhhhHHHHHHHHHHhCCcCcc
Confidence 4568899999999995 59999999999999986555421 112556666777766654478
Q ss_pred EEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEc
Q 026893 157 ESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSC 196 (231)
Q Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~ 196 (231)
...+.++++.+....|++.+. ..+.+.|++|+.
T Consensus 66 ~~~~~Dvs~~~~~~~~~~~~~-------~~fg~vDvLVNN 98 (282)
T KOG1205|consen 66 LVLQLDVSDEESVKKFVEWAI-------RHFGRVDVLVNN 98 (282)
T ss_pred EEEeCccCCHHHHHHHHHHHH-------HhcCCCCEEEec
Confidence 888899998888888775432 145788888754
No 256
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=95.77 E-value=0.057 Score=46.63 Aligned_cols=76 Identities=16% Similarity=0.235 Sum_probs=51.9
Q ss_pred HHHhcCcEEEEecCchHHHHHHHHHHhcCc----------eEEEEeCCcccccc---ccc-c-C---CCcCccCCcHHHH
Q 026893 81 ERIREFSVAIVGVGGVGSVAAEMLTRCGIG----------RLLLYDYDKVELAN---MNR-L-F---FRPEQVGMTKTDA 142 (231)
Q Consensus 81 ~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~----------~i~LiD~D~v~~~N---l~R-~-~---~~~~dvG~~Ka~~ 142 (231)
++|++.+|+++|+|+.|..+++.|...+++ +|.++|..-+-..+ ++. | . |... . ....-
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~~~~~~~~~~--~-~~~~~ 97 (254)
T cd00762 21 KKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNEYHLARFANP--E-RESGD 97 (254)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHHHHHHHHcCc--c-cccCC
Confidence 578899999999999999999999999997 99999987653332 211 1 1 2111 0 01134
Q ss_pred HHHHHHhhCCCcEEEEE
Q 026893 143 AVQTLADINPDVVLESF 159 (231)
Q Consensus 143 ~~~~l~~~np~v~v~~~ 159 (231)
+.+.++...|++-+-.-
T Consensus 98 L~eav~~~kptvlIG~S 114 (254)
T cd00762 98 LEDAVEAAKPDFLIGVS 114 (254)
T ss_pred HHHHHHhhCCCEEEEeC
Confidence 66667777777766543
No 257
>PRK08291 ectoine utilization protein EutC; Validated
Probab=95.77 E-value=0.035 Score=49.68 Aligned_cols=76 Identities=17% Similarity=0.235 Sum_probs=53.2
Q ss_pred cCcEEEEecCchHHHHHHHHHH-hcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTR-CGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~-~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
.++++|+|+|+.|...+..|.. .|+.++++++.+.- |++.+++.+++.. ++.+..+
T Consensus 132 ~~~v~IiGaG~~a~~~~~al~~~~~~~~V~v~~R~~~------------------~a~~l~~~~~~~~-g~~v~~~---- 188 (330)
T PRK08291 132 ASRAAVIGAGEQARLQLEALTLVRPIREVRVWARDAA------------------KAEAYAADLRAEL-GIPVTVA---- 188 (330)
T ss_pred CCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEcCCHH------------------HHHHHHHHHhhcc-CceEEEe----
Confidence 4689999999999999999985 67899999875443 7778887776532 3333222
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCH
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNY 200 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~ 200 (231)
++++. .+.++|+|+.|+-+.
T Consensus 189 ---~d~~~--------------al~~aDiVi~aT~s~ 208 (330)
T PRK08291 189 ---RDVHE--------------AVAGADIIVTTTPSE 208 (330)
T ss_pred ---CCHHH--------------HHccCCEEEEeeCCC
Confidence 11221 235789999988664
No 258
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.77 E-value=0.07 Score=44.36 Aligned_cols=87 Identities=16% Similarity=0.228 Sum_probs=54.0
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++|+|.|+ |++|+.+++.|+..|. ++.+++.+.- +.+.+.+.+... -.++.+..
T Consensus 3 ~~~~~vlItGa~g~iG~~~a~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~~~~~---~~~~~~~~ 60 (238)
T PRK05786 3 LKGKKVAIIGVSEGLGYAVAYFALKEGA-QVCINSRNEN------------------KLKRMKKTLSKY---GNIHYVVG 60 (238)
T ss_pred cCCcEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHHHHhc---CCeEEEEC
Confidence 45789999985 7899999999999998 6777664321 333333333322 13455666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+.+..+++.+.. .+...|.++.+..
T Consensus 61 Dl~~~~~~~~~~~~~~~-------~~~~id~ii~~ag 90 (238)
T PRK05786 61 DVSSTESARNVIEKAAK-------VLNAIDGLVVTVG 90 (238)
T ss_pred CCCCHHHHHHHHHHHHH-------HhCCCCEEEEcCC
Confidence 77766666655543321 1246787776663
No 259
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.77 E-value=0.074 Score=45.86 Aligned_cols=87 Identities=13% Similarity=0.168 Sum_probs=53.6
Q ss_pred HhcCcEEEEecC---chHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 83 IREFSVAIVGVG---GVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 83 l~~~~V~IvG~G---gvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
++++.++|.|.+ |+|..+|+.|++.|. ++.+++.+.- ..+.+.+...+.. .. ..+
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga-~V~~~~r~~~------------------~~~~~~~~~~~~g-~~--~~~ 62 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGA-ELAFTYQGEA------------------LGKRVKPLAESLG-SD--FVL 62 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCC-EEEEecCchH------------------HHHHHHHHHHhcC-Cc--eEE
Confidence 457788999987 899999999999997 5666653210 1111111112221 11 246
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
..++++.+.++.+++.+... +...|++|.+..
T Consensus 63 ~~Dv~d~~~v~~~~~~~~~~-------~g~iD~lVnnAG 94 (271)
T PRK06505 63 PCDVEDIASVDAVFEALEKK-------WGKLDFVVHAIG 94 (271)
T ss_pred eCCCCCHHHHHHHHHHHHHH-------hCCCCEEEECCc
Confidence 67777777777776654332 246788877653
No 260
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=95.77 E-value=0.068 Score=46.35 Aligned_cols=33 Identities=21% Similarity=0.434 Sum_probs=25.7
Q ss_pred CcEEEEecCchHHHHHHHHHHhc--CceEEEEeCC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCG--IGRLLLYDYD 118 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~G--v~~i~LiD~D 118 (231)
.+|.|||||.+|..++..|...+ +.-+.++|.+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 37999999999999999998764 3345566655
No 261
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=95.76 E-value=0.099 Score=45.23 Aligned_cols=37 Identities=35% Similarity=0.385 Sum_probs=32.8
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.+++++|+|.|.|.+|+++++.|...|.+-+.+.|.+
T Consensus 35 ~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~ 71 (254)
T cd05313 35 TLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSK 71 (254)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCC
Confidence 4678999999999999999999999998777788854
No 262
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.76 E-value=0.097 Score=45.93 Aligned_cols=89 Identities=13% Similarity=0.225 Sum_probs=60.1
Q ss_pred HHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 81 ERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 81 ~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
-.+++++++|.| .||+|..+++.|++.|. ++.+.|... ..+++.+.+.+... +.++..+
T Consensus 8 ~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga-~Vv~~~~~~-----------------~~~~~~~~~~i~~~--g~~~~~~ 67 (306)
T PRK07792 8 TDLSGKVAVVTGAAAGLGRAEALGLARLGA-TVVVNDVAS-----------------ALDASDVLDEIRAA--GAKAVAV 67 (306)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEecCCc-----------------hhHHHHHHHHHHhc--CCeEEEE
Confidence 346678899998 57999999999999997 566665421 11444455555543 3456677
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
..++.+.+....+++.+.. +...|+||.+.
T Consensus 68 ~~Dv~d~~~~~~~~~~~~~--------~g~iD~li~nA 97 (306)
T PRK07792 68 AGDISQRATADELVATAVG--------LGGLDIVVNNA 97 (306)
T ss_pred eCCCCCHHHHHHHHHHHHH--------hCCCCEEEECC
Confidence 7788877777776654322 24788888765
No 263
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.76 E-value=0.039 Score=47.15 Aligned_cols=87 Identities=14% Similarity=0.161 Sum_probs=51.7
Q ss_pred HHhcCcEEEEe---cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEE
Q 026893 82 RIREFSVAIVG---VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLES 158 (231)
Q Consensus 82 kl~~~~V~IvG---~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~ 158 (231)
+++++.++|.| .+|+|.++++.|++.|. ++.+.+.. + +.+...+.+.+.... ...
T Consensus 3 ~~~~k~~lITGa~~~~GIG~a~a~~l~~~G~-~v~~~~~~--~-----------------~~~~~~~~~~~~~~~--~~~ 60 (261)
T PRK08690 3 FLQGKKILITGMISERSIAYGIAKACREQGA-ELAFTYVV--D-----------------KLEERVRKMAAELDS--ELV 60 (261)
T ss_pred ccCCcEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCc--H-----------------HHHHHHHHHHhccCC--ceE
Confidence 46788999999 45999999999999998 45554321 0 111111112111112 224
Q ss_pred EeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 159 FTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+..++++.+..+.+++.+... +...|++|.+.
T Consensus 61 ~~~Dv~~~~~v~~~~~~~~~~-------~g~iD~lVnnA 92 (261)
T PRK08690 61 FRCDVASDDEINQVFADLGKH-------WDGLDGLVHSI 92 (261)
T ss_pred EECCCCCHHHHHHHHHHHHHH-------hCCCcEEEECC
Confidence 566777777777776554332 24677777664
No 264
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=95.75 E-value=0.077 Score=44.91 Aligned_cols=86 Identities=12% Similarity=0.231 Sum_probs=56.1
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.++.++|.| .||+|.++++.|++.|. ++.++|... .+...+.+.+.. .++..+..
T Consensus 8 l~~k~~lItG~~~gIG~a~a~~l~~~G~-~vv~~~~~~--------------------~~~~~~~~~~~~--~~~~~~~~ 64 (253)
T PRK08993 8 LEGKVAVVTGCDTGLGQGMALGLAEAGC-DIVGINIVE--------------------PTETIEQVTALG--RRFLSLTA 64 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEecCcc--------------------hHHHHHHHHhcC--CeEEEEEC
Confidence 5678899997 66899999999999997 455544210 011223334332 34557777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+++..+++.+... +...|++|.|..
T Consensus 65 Dl~~~~~~~~~~~~~~~~-------~~~~D~li~~Ag 94 (253)
T PRK08993 65 DLRKIDGIPALLERAVAE-------FGHIDILVNNAG 94 (253)
T ss_pred CCCCHHHHHHHHHHHHHH-------hCCCCEEEECCC
Confidence 888777777777665432 247888887763
No 265
>PTZ00325 malate dehydrogenase; Provisional
Probab=95.75 E-value=0.021 Score=51.11 Aligned_cols=35 Identities=34% Similarity=0.645 Sum_probs=30.6
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcC-ceEEEEeC
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGI-GRLLLYDY 117 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv-~~i~LiD~ 117 (231)
++..||+|+|+ |.+|+.++..|+..|. .++.|+|-
T Consensus 6 ~~~~KI~IiGaaG~VGs~~a~~l~~~~~~~elvL~Di 42 (321)
T PTZ00325 6 LKMFKVAVLGAAGGIGQPLSLLLKQNPHVSELSLYDI 42 (321)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHhcCCCCCEEEEEec
Confidence 45569999998 9999999999987776 58999997
No 266
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=95.75 E-value=0.081 Score=49.35 Aligned_cols=38 Identities=29% Similarity=0.367 Sum_probs=34.5
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
.|++++|+|-|.|-+|+++++.|...|.+-+.+.|.+-
T Consensus 234 ~l~Gk~VaVqG~GnVg~~aa~~L~e~GakVVavSD~~G 271 (454)
T PTZ00079 234 SLEGKTVVVSGSGNVAQYAVEKLLQLGAKVLTMSDSDG 271 (454)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCC
Confidence 47889999999999999999999999998888988774
No 267
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.74 E-value=0.089 Score=45.50 Aligned_cols=87 Identities=17% Similarity=0.292 Sum_probs=54.2
Q ss_pred HhcCcEEEEec---CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 83 IREFSVAIVGV---GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 83 l~~~~V~IvG~---GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
++++.++|.|. +|+|.++++.|++.|. ++.+.|.+.- ...+++.+.+ +.... ..+
T Consensus 3 l~~k~~lItGas~~~GIG~aiA~~la~~G~-~Vil~~r~~~---------------~~~~~~~~~~---~~~~~---~~~ 60 (274)
T PRK08415 3 MKGKKGLIVGVANNKSIAYGIAKACFEQGA-ELAFTYLNEA---------------LKKRVEPIAQ---ELGSD---YVY 60 (274)
T ss_pred cCCcEEEEECCCCCCCHHHHHHHHHHHCCC-EEEEEecCHH---------------HHHHHHHHHH---hcCCc---eEE
Confidence 45788999997 4999999999999997 6767664310 0012222222 22211 356
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
..++++.+..+.+++.+... +...|++|.+..
T Consensus 61 ~~Dv~d~~~v~~~~~~i~~~-------~g~iDilVnnAG 92 (274)
T PRK08415 61 ELDVSKPEHFKSLAESLKKD-------LGKIDFIVHSVA 92 (274)
T ss_pred EecCCCHHHHHHHHHHHHHH-------cCCCCEEEECCc
Confidence 66787777777777655332 246788777653
No 268
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.73 E-value=0.034 Score=51.22 Aligned_cols=37 Identities=24% Similarity=0.338 Sum_probs=33.2
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCcc
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKV 120 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v 120 (231)
+.+++|+|+|+|.+|..++..+...|. +++++|.|..
T Consensus 193 l~Gk~VvViG~G~IG~~vA~~ak~~Ga-~ViV~d~dp~ 229 (406)
T TIGR00936 193 IAGKTVVVAGYGWCGKGIAMRARGMGA-RVIVTEVDPI 229 (406)
T ss_pred CCcCEEEEECCCHHHHHHHHHHhhCcC-EEEEEeCChh
Confidence 679999999999999999999999998 6888887665
No 269
>PRK05599 hypothetical protein; Provisional
Probab=95.73 E-value=0.088 Score=44.51 Aligned_cols=83 Identities=11% Similarity=0.241 Sum_probs=55.2
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
.++|.| .+|+|..+++.|++ | .++.+++.+. .+.+.+++.+.+.++. .+..+..++.+
T Consensus 2 ~vlItGas~GIG~aia~~l~~-g-~~Vil~~r~~------------------~~~~~~~~~l~~~~~~-~~~~~~~Dv~d 60 (246)
T PRK05599 2 SILILGGTSDIAGEIATLLCH-G-EDVVLAARRP------------------EAAQGLASDLRQRGAT-SVHVLSFDAQD 60 (246)
T ss_pred eEEEEeCccHHHHHHHHHHhC-C-CEEEEEeCCH------------------HHHHHHHHHHHhccCC-ceEEEEcccCC
Confidence 577887 57899999999985 7 5777766432 2455566666655432 34466777887
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
.+..+.+++.+.+. ..+.|++|.+.
T Consensus 61 ~~~v~~~~~~~~~~-------~g~id~lv~na 85 (246)
T PRK05599 61 LDTHRELVKQTQEL-------AGEISLAVVAF 85 (246)
T ss_pred HHHHHHHHHHHHHh-------cCCCCEEEEec
Confidence 77777777655432 24677777654
No 270
>PRK11908 NAD-dependent epimerase/dehydratase family protein; Provisional
Probab=95.72 E-value=0.1 Score=46.41 Aligned_cols=32 Identities=22% Similarity=0.186 Sum_probs=25.5
Q ss_pred CcEEEEec-CchHHHHHHHHHHhcCceEEEEeC
Q 026893 86 FSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 86 ~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
++|+|.|+ |-+|+++++.|...|=-+++.+|.
T Consensus 2 ~~ilVtGatGfiGs~l~~~L~~~~~~~V~~~~r 34 (347)
T PRK11908 2 KKVLILGVNGFIGHHLSKRILETTDWEVYGMDM 34 (347)
T ss_pred cEEEEECCCcHHHHHHHHHHHhCCCCeEEEEeC
Confidence 47999995 999999999998763237777764
No 271
>TIGR02415 23BDH acetoin reductases. One member of this family, as characterized in Klebsiella terrigena, is described as able to interconvert acetoin + NADH with meso-2,3-butanediol + NAD(+). It is also called capable of irreversible reduction of diacetyl with NADH to acetoin. Blomqvist, et al. decline to specify either EC 1.1.1.4 which is (R,R)-butanediol dehydrogenase, or EC 1.1.1.5, which is acetoin dehydrogenase without a specified stereochemistry, for this enzyme. This enzyme is a homotetramer in the family of short chain dehydrogenases (pfam00106). Another member of this family, from Corynebacterium glutamicum, is called L-2,3-butanediol dehydrogenase (PubMed:11577733).
Probab=95.72 E-value=0.093 Score=44.05 Aligned_cols=84 Identities=14% Similarity=0.257 Sum_probs=54.0
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
++++|.| .|++|..+++.|+..|. ++.+++.+. .+.+.+.+.+... ...+..+..+++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~l~~~--~~~~~~~~~Dl~ 59 (254)
T TIGR02415 1 KVALVTGGAQGIGKGIAERLAKDGF-AVAVADLNE------------------ETAKETAKEINQA--GGKAVAYKLDVS 59 (254)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhc--CCeEEEEEcCCC
Confidence 3678887 68999999999999997 677776431 1333334444433 334556777777
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+.+.+...+..+... +...|+||.+.
T Consensus 60 ~~~~i~~~~~~~~~~-------~~~id~vi~~a 85 (254)
T TIGR02415 60 DKDQVFSAIDQAAEK-------FGGFDVMVNNA 85 (254)
T ss_pred CHHHHHHHHHHHHHH-------cCCCCEEEECC
Confidence 766666655543322 24678887765
No 272
>PRK12827 short chain dehydrogenase; Provisional
Probab=95.72 E-value=0.092 Score=43.73 Aligned_cols=91 Identities=15% Similarity=0.245 Sum_probs=57.2
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++|+| .|++|.++++.|+..|. ++++++.... -...+.+.+.+.+.... ..++.+..
T Consensus 4 ~~~~~ilItGasg~iG~~la~~l~~~g~-~v~~~~~~~~--------------~~~~~~~~~~~~~~~~~--~~~~~~~~ 66 (249)
T PRK12827 4 LDSRRVLITGGSGGLGRAIAVRLAADGA-DVIVLDIHPM--------------RGRAEADAVAAGIEAAG--GKALGLAF 66 (249)
T ss_pred cCCCEEEEECCCChHHHHHHHHHHHCCC-eEEEEcCccc--------------ccHHHHHHHHHHHHhcC--CcEEEEEc
Confidence 4567899998 78999999999999997 5677663211 01224444455554443 34556677
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++.+.+.+...++.+... ..++|.||.+.
T Consensus 67 Dl~~~~~~~~~~~~~~~~-------~~~~d~vi~~a 95 (249)
T PRK12827 67 DVRDFAATRAALDAGVEE-------FGRLDILVNNA 95 (249)
T ss_pred cCCCHHHHHHHHHHHHHH-------hCCCCEEEECC
Confidence 777666666555433221 24678888775
No 273
>TIGR01181 dTDP_gluc_dehyt dTDP-glucose 4,6-dehydratase. This protein is related to UDP-glucose 4-epimerase (GalE) and likewise has an NAD cofactor.
Probab=95.71 E-value=0.2 Score=43.22 Aligned_cols=31 Identities=16% Similarity=0.274 Sum_probs=25.2
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcC-ceEEEEeC
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGI-GRLLLYDY 117 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv-~~i~LiD~ 117 (231)
+|+|.| +|.+|+++++.|...|- .+++.+|.
T Consensus 1 ~ilItGatG~iG~~l~~~l~~~~~~~~v~~~~~ 33 (317)
T TIGR01181 1 RILVTGGAGFIGSNFVRYILNEHPDAEVIVLDK 33 (317)
T ss_pred CEEEEcCCchHHHHHHHHHHHhCCCCEEEEecC
Confidence 588898 69999999999998873 46777764
No 274
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=95.69 E-value=0.089 Score=46.99 Aligned_cols=36 Identities=22% Similarity=0.073 Sum_probs=30.1
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++.++|+|.| +|-+|+++++.|...|. +++.+|..
T Consensus 12 ~~~~~~vlVtGatGfiG~~lv~~L~~~g~-~V~~~d~~ 48 (348)
T PRK15181 12 VLAPKRWLITGVAGFIGSGLLEELLFLNQ-TVIGLDNF 48 (348)
T ss_pred cccCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45568999998 69999999999999885 77788754
No 275
>PLN02780 ketoreductase/ oxidoreductase
Probab=95.68 E-value=0.096 Score=46.50 Aligned_cols=62 Identities=16% Similarity=0.256 Sum_probs=46.4
Q ss_pred hcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 84 REFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 84 ~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
.++.++|.| .||+|.++++.|++.|. ++.+++.+. .|.+.+++.+.+.++..++..+..+
T Consensus 52 ~g~~~lITGAs~GIG~alA~~La~~G~-~Vil~~R~~------------------~~l~~~~~~l~~~~~~~~~~~~~~D 112 (320)
T PLN02780 52 YGSWALVTGPTDGIGKGFAFQLARKGL-NLVLVARNP------------------DKLKDVSDSIQSKYSKTQIKTVVVD 112 (320)
T ss_pred cCCEEEEeCCCcHHHHHHHHHHHHCCC-CEEEEECCH------------------HHHHHHHHHHHHHCCCcEEEEEEEE
Confidence 367888988 57999999999999997 688877542 2556667777776666676666666
Q ss_pred cc
Q 026893 163 IT 164 (231)
Q Consensus 163 i~ 164 (231)
++
T Consensus 113 l~ 114 (320)
T PLN02780 113 FS 114 (320)
T ss_pred CC
Confidence 65
No 276
>PRK09072 short chain dehydrogenase; Provisional
Probab=95.68 E-value=0.089 Score=44.66 Aligned_cols=86 Identities=24% Similarity=0.396 Sum_probs=56.4
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.| +||+|.++++.|+..|. ++++++.+. .+.+.+...+ .. ..++..+..
T Consensus 3 ~~~~~vlItG~s~~iG~~ia~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~-~~--~~~~~~~~~ 60 (263)
T PRK09072 3 LKDKRVLLTGASGGIGQALAEALAAAGA-RLLLVGRNA------------------EKLEALAARL-PY--PGRHRWVVA 60 (263)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHH-hc--CCceEEEEc
Confidence 4567899998 69999999999999996 588877532 1223333333 22 234556777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+.+..+++.+.. +...|+||.+..
T Consensus 61 D~~d~~~~~~~~~~~~~--------~~~id~lv~~ag 89 (263)
T PRK09072 61 DLTSEAGREAVLARARE--------MGGINVLINNAG 89 (263)
T ss_pred cCCCHHHHHHHHHHHHh--------cCCCCEEEECCC
Confidence 77776666666554322 246788888753
No 277
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=95.67 E-value=0.089 Score=43.79 Aligned_cols=85 Identities=19% Similarity=0.282 Sum_probs=52.9
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.| .|++|..+++.|+..|. .+.+.+.+. .+.+.+. .... .++..+..
T Consensus 4 ~~~~~vlItGa~g~iG~~la~~l~~~g~-~v~~~~~~~------------------~~~~~~~---~~~~--~~~~~~~~ 59 (245)
T PRK12936 4 LSGRKALVTGASGGIGEEIARLLHAQGA-IVGLHGTRV------------------EKLEALA---AELG--ERVKIFPA 59 (245)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEcCCH------------------HHHHHHH---HHhC--CceEEEEc
Confidence 4577899998 78999999999999986 555544321 1222222 2222 23446666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+..+++.+... +.+.|+||.|..
T Consensus 60 D~~~~~~~~~~~~~~~~~-------~~~id~vi~~ag 89 (245)
T PRK12936 60 NLSDRDEVKALGQKAEAD-------LEGVDILVNNAG 89 (245)
T ss_pred cCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 777666666665443322 346888887754
No 278
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=95.67 E-value=0.058 Score=50.44 Aligned_cols=35 Identities=29% Similarity=0.421 Sum_probs=31.0
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+.+++|+|+|.|++|.++|..|...|. +++++|..
T Consensus 14 ~~~~~v~viG~G~~G~~~A~~L~~~G~-~V~~~d~~ 48 (480)
T PRK01438 14 WQGLRVVVAGLGVSGFAAADALLELGA-RVTVVDDG 48 (480)
T ss_pred cCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 457799999999999999999999997 69999854
No 279
>PRK07531 bifunctional 3-hydroxyacyl-CoA dehydrogenase/thioesterase; Validated
Probab=95.67 E-value=0.08 Score=50.01 Aligned_cols=33 Identities=24% Similarity=0.354 Sum_probs=29.6
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
.+|.|||+|-.|+.+|..|++.|. +++++|.+.
T Consensus 5 ~kIavIG~G~MG~~iA~~la~~G~-~V~v~D~~~ 37 (495)
T PRK07531 5 MKAACIGGGVIGGGWAARFLLAGI-DVAVFDPHP 37 (495)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 479999999999999999999997 889998753
No 280
>PRK09135 pteridine reductase; Provisional
Probab=95.67 E-value=0.11 Score=43.20 Aligned_cols=89 Identities=13% Similarity=0.216 Sum_probs=55.9
Q ss_pred hcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 84 REFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 84 ~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
.+++|+|.| .|++|.++++.|++.|. ++.+++.... .+.+.+...+....+. .+..+..+
T Consensus 5 ~~~~vlItGa~g~iG~~l~~~l~~~g~-~v~~~~r~~~-----------------~~~~~~~~~~~~~~~~-~~~~~~~D 65 (249)
T PRK09135 5 SAKVALITGGARRIGAAIARTLHAAGY-RVAIHYHRSA-----------------AEADALAAELNALRPG-SAAALQAD 65 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEcCCCH-----------------HHHHHHHHHHHhhcCC-ceEEEEcC
Confidence 346899998 68999999999999997 5566553221 1333444445444332 34566667
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
+++.+.+..++..+.. .+..+|+||.|..
T Consensus 66 l~~~~~~~~~~~~~~~-------~~~~~d~vi~~ag 94 (249)
T PRK09135 66 LLDPDALPELVAACVA-------AFGRLDALVNNAS 94 (249)
T ss_pred CCCHHHHHHHHHHHHH-------HcCCCCEEEECCC
Confidence 7766666665543322 2346788887764
No 281
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.67 E-value=0.086 Score=44.88 Aligned_cols=87 Identities=11% Similarity=0.173 Sum_probs=54.6
Q ss_pred HHhcCcEEEEecC---chHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEE
Q 026893 82 RIREFSVAIVGVG---GVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLES 158 (231)
Q Consensus 82 kl~~~~V~IvG~G---gvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~ 158 (231)
+++++.++|.|.+ |+|.++++.|++.|. ++.+.|.+.-. ..+.+.+++.+ +.+ ..
T Consensus 7 ~~~~k~~lItGas~g~GIG~a~a~~la~~G~-~v~l~~r~~~~---------------~~~~~~~~~~~----~~~--~~ 64 (258)
T PRK07533 7 PLAGKRGLVVGIANEQSIAWGCARAFRALGA-ELAVTYLNDKA---------------RPYVEPLAEEL----DAP--IF 64 (258)
T ss_pred ccCCCEEEEECCCCCCcHHHHHHHHHHHcCC-EEEEEeCChhh---------------HHHHHHHHHhh----ccc--eE
Confidence 4667889999975 899999999999997 57777653100 00222222222 122 24
Q ss_pred EeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 159 FTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+..++++.+..+.+++.+... +...|++|.|.
T Consensus 65 ~~~D~~~~~~v~~~~~~~~~~-------~g~ld~lv~nA 96 (258)
T PRK07533 65 LPLDVREPGQLEAVFARIAEE-------WGRLDFLLHSI 96 (258)
T ss_pred EecCcCCHHHHHHHHHHHHHH-------cCCCCEEEEcC
Confidence 566777777777776654332 24678887764
No 282
>PRK10217 dTDP-glucose 4,6-dehydratase; Provisional
Probab=95.67 E-value=0.17 Score=44.89 Aligned_cols=32 Identities=19% Similarity=0.262 Sum_probs=27.1
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeC
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
++|+|.| .|.+|+++++.|...|...+.++|.
T Consensus 2 ~~vlVtGatGfIG~~l~~~L~~~g~~~v~~~~~ 34 (355)
T PRK10217 2 RKILITGGAGFIGSALVRYIINETSDAVVVVDK 34 (355)
T ss_pred cEEEEEcCCcHHHHHHHHHHHHcCCCEEEEEec
Confidence 4789998 5889999999999999877777764
No 283
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=95.66 E-value=0.16 Score=42.61 Aligned_cols=31 Identities=26% Similarity=0.514 Sum_probs=26.6
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+|.||| +|.+|+.++..|++.| .+++++|.+
T Consensus 2 kI~IIGG~G~mG~ala~~L~~~G-~~V~v~~r~ 33 (219)
T TIGR01915 2 KIAVLGGTGDQGKGLALRLAKAG-NKIIIGSRD 33 (219)
T ss_pred EEEEEcCCCHHHHHHHHHHHhCC-CEEEEEEcC
Confidence 699997 8999999999999998 577777643
No 284
>PRK07806 short chain dehydrogenase; Provisional
Probab=95.66 E-value=0.087 Score=44.11 Aligned_cols=88 Identities=16% Similarity=0.288 Sum_probs=53.7
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++|.|+ |++|..+++.|+..|. ++++++.+.- .+.+.+...+... ..++..+..
T Consensus 4 ~~~k~vlItGasggiG~~l~~~l~~~G~-~V~~~~r~~~-----------------~~~~~~~~~l~~~--~~~~~~~~~ 63 (248)
T PRK07806 4 LPGKTALVTGSSRGIGADTAKILAGAGA-HVVVNYRQKA-----------------PRANKVVAEIEAA--GGRASAVGA 63 (248)
T ss_pred CCCcEEEEECCCCcHHHHHHHHHHHCCC-EEEEEeCCch-----------------HhHHHHHHHHHhc--CCceEEEEc
Confidence 45678999985 8999999999999996 4555543210 1223334444433 234456666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..+++.+.. .+..+|+||.+.
T Consensus 64 D~~~~~~~~~~~~~~~~-------~~~~~d~vi~~a 92 (248)
T PRK07806 64 DLTDEESVAALMDTARE-------EFGGLDALVLNA 92 (248)
T ss_pred CCCCHHHHHHHHHHHHH-------hCCCCcEEEECC
Confidence 77776666666554322 124577777554
No 285
>PRK07069 short chain dehydrogenase; Validated
Probab=95.66 E-value=0.13 Score=43.00 Aligned_cols=87 Identities=16% Similarity=0.301 Sum_probs=52.8
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
+|+|.| .||+|.++++.|++.|. ++.+++.+. ..+.+.+.+.+........+..+..++.+
T Consensus 1 ~ilVtG~~~~iG~~~a~~l~~~G~-~v~~~~r~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~D~~~ 62 (251)
T PRK07069 1 RAFITGAAGGLGRAIARRMAEQGA-KVFLTDIND-----------------AAGLDAFAAEINAAHGEGVAFAAVQDVTD 62 (251)
T ss_pred CEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCc-----------------chHHHHHHHHHHhcCCCceEEEEEeecCC
Confidence 377887 78999999999999996 677776431 11333444444443322233345556666
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.+.+...++.+.. .+.+.|+||.|..
T Consensus 63 ~~~~~~~~~~~~~-------~~~~id~vi~~ag 88 (251)
T PRK07069 63 EAQWQALLAQAAD-------AMGGLSVLVNNAG 88 (251)
T ss_pred HHHHHHHHHHHHH-------HcCCccEEEECCC
Confidence 6666665544322 1346788887753
No 286
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.66 E-value=0.085 Score=44.78 Aligned_cols=99 Identities=13% Similarity=0.263 Sum_probs=61.7
Q ss_pred HHhcCcEEEEecC---chHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEE
Q 026893 82 RIREFSVAIVGVG---GVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLES 158 (231)
Q Consensus 82 kl~~~~V~IvG~G---gvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~ 158 (231)
+|.+++|+|.|++ |+|.++++.|+..|. ++.+.+...... +.. .. ....+...+.+.+.+. ..++..
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~-~vi~~~~~~~~~-~~~---~~---~~~~~~~~~~~~~~~~--g~~~~~ 72 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGA-DIFFTYWTAYDK-EMP---WG---VDQDEQIQLQEELLKN--GVKVSS 72 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCC-eEEEEecccccc-ccc---cc---ccHHHHHHHHHHHHhc--CCeEEE
Confidence 5778999999984 899999999999997 566654221110 000 00 0111223444555543 346667
Q ss_pred EeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 159 FTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+..++++.+++..++..+... +...|+||.+.
T Consensus 73 ~~~D~~~~~~i~~~~~~~~~~-------~g~id~li~~a 104 (256)
T PRK12859 73 MELDLTQNDAPKELLNKVTEQ-------LGYPHILVNNA 104 (256)
T ss_pred EEcCCCCHHHHHHHHHHHHHH-------cCCCcEEEECC
Confidence 788888878887777654332 24678888764
No 287
>PRK08267 short chain dehydrogenase; Provisional
Probab=95.66 E-value=0.088 Score=44.55 Aligned_cols=84 Identities=19% Similarity=0.301 Sum_probs=52.8
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
++++|+| .||+|..+++.|++.|. ++.++|.+.- +.+.+.+.+. ...++.+..+++
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~~~----~~~~~~~~~D~~ 58 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGW-RVGAYDINEA------------------GLAALAAELG----AGNAWTGALDVT 58 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCC-eEEEEeCCHH------------------HHHHHHHHhc----CCceEEEEecCC
Confidence 4688997 68999999999999996 6667664321 2222322221 344556777777
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
+.+.+..++..+... ...+.|+||.|..
T Consensus 59 ~~~~v~~~~~~~~~~------~~~~id~vi~~ag 86 (260)
T PRK08267 59 DRAAWDAALADFAAA------TGGRLDVLFNNAG 86 (260)
T ss_pred CHHHHHHHHHHHHHH------cCCCCCEEEECCC
Confidence 766666655443221 1346788887754
No 288
>PRK07832 short chain dehydrogenase; Provisional
Probab=95.65 E-value=0.092 Score=44.91 Aligned_cols=85 Identities=21% Similarity=0.334 Sum_probs=53.0
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
+++|+| .||+|..+++.|++.|. ++.+++.+. .+.+.+.+.+....... +..+..++.+
T Consensus 2 ~vlItGas~giG~~la~~la~~G~-~vv~~~r~~------------------~~~~~~~~~~~~~~~~~-~~~~~~D~~~ 61 (272)
T PRK07832 2 RCFVTGAASGIGRATALRLAAQGA-ELFLTDRDA------------------DGLAQTVADARALGGTV-PEHRALDISD 61 (272)
T ss_pred EEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCCCc-ceEEEeeCCC
Confidence 578887 78999999999999997 477766331 13333444444432222 2334556666
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.+.++.+.+.+... +.+.|+||.+..
T Consensus 62 ~~~~~~~~~~~~~~-------~~~id~lv~~ag 87 (272)
T PRK07832 62 YDAVAAFAADIHAA-------HGSMDVVMNIAG 87 (272)
T ss_pred HHHHHHHHHHHHHh-------cCCCCEEEECCC
Confidence 66666665544322 356899888764
No 289
>TIGR02632 RhaD_aldol-ADH rhamnulose-1-phosphate aldolase/alcohol dehydrogenase.
Probab=95.64 E-value=0.077 Score=52.05 Aligned_cols=90 Identities=18% Similarity=0.265 Sum_probs=58.4
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++|+|.| .||+|..+++.|+..|. ++.++|.+.- +.+.+.+.+...+..-.+..+..
T Consensus 412 l~gkvvLVTGasggIG~aiA~~La~~Ga-~Vvi~~r~~~------------------~~~~~~~~l~~~~~~~~~~~v~~ 472 (676)
T TIGR02632 412 LARRVAFVTGGAGGIGRETARRLAAEGA-HVVLADLNLE------------------AAEAVAAEINGQFGAGRAVALKM 472 (676)
T ss_pred CCCCEEEEeCCCcHHHHHHHHHHHhCCC-EEEEEeCCHH------------------HHHHHHHHHHhhcCCCcEEEEEC
Confidence 4567888988 58999999999999997 7888774321 33334444443333334456677
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.+..+++.+.. .+.++|+||.+..
T Consensus 473 Dvtd~~~v~~a~~~i~~-------~~g~iDilV~nAG 502 (676)
T TIGR02632 473 DVTDEQAVKAAFADVAL-------AYGGVDIVVNNAG 502 (676)
T ss_pred CCCCHHHHHHHHHHHHH-------hcCCCcEEEECCC
Confidence 77776666666554322 2357888887754
No 290
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=95.64 E-value=0.044 Score=41.94 Aligned_cols=95 Identities=23% Similarity=0.203 Sum_probs=55.6
Q ss_pred cEEEEec-CchHHHHHHHHHH-hcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhh-CCCcEEEEEeecc
Q 026893 87 SVAIVGV-GGVGSVAAEMLTR-CGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADI-NPDVVLESFTLNI 163 (231)
Q Consensus 87 ~V~IvG~-GgvGs~ia~~La~-~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~-np~v~v~~~~~~i 163 (231)
||+|+|+ |-.|+.+++.+.. .|+.=.-.+|...= -+...|+| + +..+ ...+.+
T Consensus 2 rV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~~--------~~~g~d~g----~-----~~~~~~~~~~v------- 57 (124)
T PF01113_consen 2 RVGIVGASGRMGRAIAEAILESPGFELVGAVDRKPS--------AKVGKDVG----E-----LAGIGPLGVPV------- 57 (124)
T ss_dssp EEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTTS--------TTTTSBCH----H-----HCTSST-SSBE-------
T ss_pred EEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCCc--------ccccchhh----h-----hhCcCCccccc-------
Confidence 7999999 9999999999998 55544445554430 11112222 1 1111 112221
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCc
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGK 222 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~ 222 (231)
. ++++. .+..+|+|||++ +.++-....++|.++++|++-+-+
T Consensus 58 ~--~~l~~--------------~~~~~DVvIDfT-~p~~~~~~~~~~~~~g~~~ViGTT 99 (124)
T PF01113_consen 58 T--DDLEE--------------LLEEADVVIDFT-NPDAVYDNLEYALKHGVPLVIGTT 99 (124)
T ss_dssp B--S-HHH--------------HTTH-SEEEEES--HHHHHHHHHHHHHHT-EEEEE-S
T ss_pred c--hhHHH--------------hcccCCEEEEcC-ChHHhHHHHHHHHhCCCCEEEECC
Confidence 1 23332 234599999999 667777888999999999886443
No 291
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.63 E-value=0.052 Score=46.80 Aligned_cols=89 Identities=15% Similarity=0.149 Sum_probs=54.5
Q ss_pred HHHHhcCcEEEEec---CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEE
Q 026893 80 YERIREFSVAIVGV---GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVL 156 (231)
Q Consensus 80 ~~kl~~~~V~IvG~---GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v 156 (231)
..+++++.++|.|. +|+|.++++.|++.|. ++.+.+.+. .+ ..+++.+.+.+ .. .
T Consensus 5 ~~~~~~k~~lItGas~~~GIG~aia~~la~~G~-~V~l~~r~~---~~------------~~~~~~l~~~~----~~--~ 62 (272)
T PRK08159 5 SGLMAGKRGLILGVANNRSIAWGIAKACRAAGA-ELAFTYQGD---AL------------KKRVEPLAAEL----GA--F 62 (272)
T ss_pred cccccCCEEEEECCCCCCcHHHHHHHHHHHCCC-EEEEEcCch---HH------------HHHHHHHHHhc----CC--c
Confidence 45677888999997 5999999999999998 566765320 00 01222222222 11 2
Q ss_pred EEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 157 ESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 157 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
..+..++++.+..+.+++.+... +...|++|.+.
T Consensus 63 ~~~~~Dl~~~~~v~~~~~~~~~~-------~g~iD~lv~nA 96 (272)
T PRK08159 63 VAGHCDVTDEASIDAVFETLEKK-------WGKLDFVVHAI 96 (272)
T ss_pred eEEecCCCCHHHHHHHHHHHHHh-------cCCCcEEEECC
Confidence 24566777777777776654322 24677777664
No 292
>PRK10538 malonic semialdehyde reductase; Provisional
Probab=95.63 E-value=0.099 Score=44.01 Aligned_cols=80 Identities=15% Similarity=0.268 Sum_probs=51.5
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
+|+|+| .||+|..+++.|+..|. ++.+++.+. .+.+.+.+. +.+ .++.+..++.+
T Consensus 2 ~vlItGasg~iG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~---~~~--~~~~~~~Dl~~ 57 (248)
T PRK10538 2 IVLVTGATAGFGECITRRFIQQGH-KVIATGRRQ------------------ERLQELKDE---LGD--NLYIAQLDVRN 57 (248)
T ss_pred EEEEECCCchHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHH---hcc--ceEEEEecCCC
Confidence 688898 68999999999999997 577776431 133333222 222 34466677777
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
.+.+..+++.+.. .+.++|+||.+.
T Consensus 58 ~~~i~~~~~~~~~-------~~~~id~vi~~a 82 (248)
T PRK10538 58 RAAIEEMLASLPA-------EWRNIDVLVNNA 82 (248)
T ss_pred HHHHHHHHHHHHH-------HcCCCCEEEECC
Confidence 6666666554332 234788888764
No 293
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=95.62 E-value=0.027 Score=51.26 Aligned_cols=35 Identities=31% Similarity=0.453 Sum_probs=31.6
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+...+|+|+|+|.+|..++..+.+.|+ +++++|.+
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa-~V~v~d~~ 199 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGA-TVTILDIN 199 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCC-eEEEEECC
Confidence 467789999999999999999999998 69999865
No 294
>PRK07102 short chain dehydrogenase; Provisional
Probab=95.62 E-value=0.098 Score=43.79 Aligned_cols=82 Identities=23% Similarity=0.323 Sum_probs=53.4
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
++|+|.| .||+|..+++.|+..|. +++++|.+.- +.+.+.+.+... +..+++.+..+++
T Consensus 2 ~~vlItGas~giG~~~a~~l~~~G~-~Vi~~~r~~~------------------~~~~~~~~~~~~-~~~~~~~~~~Dl~ 61 (243)
T PRK07102 2 KKILIIGATSDIARACARRYAAAGA-RLYLAARDVE------------------RLERLADDLRAR-GAVAVSTHELDIL 61 (243)
T ss_pred cEEEEEcCCcHHHHHHHHHHHhcCC-EEEEEeCCHH------------------HHHHHHHHHHHh-cCCeEEEEecCCC
Confidence 4788887 79999999999999996 5777775431 333334444332 3446667777777
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+.+.+..+++.+ ...+|+||.+.
T Consensus 62 ~~~~~~~~~~~~----------~~~~d~vv~~a 84 (243)
T PRK07102 62 DTASHAAFLDSL----------PALPDIVLIAV 84 (243)
T ss_pred ChHHHHHHHHHH----------hhcCCEEEECC
Confidence 766666665432 12457777643
No 295
>PRK06270 homoserine dehydrogenase; Provisional
Probab=95.61 E-value=0.097 Score=47.10 Aligned_cols=22 Identities=41% Similarity=0.773 Sum_probs=19.9
Q ss_pred CcEEEEecCchHHHHHHHHHHh
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRC 107 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~ 107 (231)
.+|+|+|+|.+|+.+++.|...
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~ 24 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEK 24 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHh
Confidence 4899999999999999999765
No 296
>PRK12746 short chain dehydrogenase; Provisional
Probab=95.61 E-value=0.06 Score=45.30 Aligned_cols=94 Identities=14% Similarity=0.226 Sum_probs=54.8
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEE-eCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLY-DYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~Li-D~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
++++++|+|.| .|++|+++++.|++.|.. +.+. ..+. .+.+...+.+... ..+++.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~-v~i~~~r~~------------------~~~~~~~~~~~~~--~~~~~~~ 61 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGAL-VAIHYGRNK------------------QAADETIREIESN--GGKAFLI 61 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCE-EEEEcCCCH------------------HHHHHHHHHHHhc--CCcEEEE
Confidence 35678999998 789999999999999864 4332 2211 1222333333332 2345577
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
..++++.+.+..++..+...... .....+.|+||.|.
T Consensus 62 ~~D~~d~~~i~~~~~~~~~~~~~-~~~~~~id~vi~~a 98 (254)
T PRK12746 62 EADLNSIDGVKKLVEQLKNELQI-RVGTSEIDILVNNA 98 (254)
T ss_pred EcCcCCHHHHHHHHHHHHHHhcc-ccCCCCccEEEECC
Confidence 77888777776665544322100 00113578888665
No 297
>PRK06398 aldose dehydrogenase; Validated
Probab=95.58 E-value=0.06 Score=45.81 Aligned_cols=36 Identities=17% Similarity=0.405 Sum_probs=29.9
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.+++++++|.| .||+|.++++.|++.|. ++.+++.+
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~-~Vi~~~r~ 39 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGS-NVINFDIK 39 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCC-eEEEEeCC
Confidence 35678899998 67999999999999997 67777754
No 298
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=95.57 E-value=0.097 Score=44.32 Aligned_cols=85 Identities=12% Similarity=0.185 Sum_probs=54.9
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++|.| .||+|..+++.|++.|. ++.+++.+. .+.+.+.+.... .++..+..
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~-~vv~~~~~~--------------------~~~~~~~~~~~~--~~~~~~~~ 62 (251)
T PRK12481 6 LNGKVAIITGCNTGLGQGMAIGLAKAGA-DIVGVGVAE--------------------APETQAQVEALG--RKFHFITA 62 (251)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEecCch--------------------HHHHHHHHHHcC--CeEEEEEe
Confidence 5677888887 77999999999999998 455554321 112233344332 34556777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.++.+++.+... +.+.|++|.+.
T Consensus 63 Dl~~~~~~~~~~~~~~~~-------~g~iD~lv~~a 91 (251)
T PRK12481 63 DLIQQKDIDSIVSQAVEV-------MGHIDILINNA 91 (251)
T ss_pred CCCCHHHHHHHHHHHHHH-------cCCCCEEEECC
Confidence 788777777776554322 34678877764
No 299
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.56 E-value=0.082 Score=46.41 Aligned_cols=34 Identities=21% Similarity=0.340 Sum_probs=29.3
Q ss_pred hcCcEEEEecCchHHHHHHHHHHhcCceEEEEeC
Q 026893 84 REFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 84 ~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
+..+|+|+|+|++|..++..+...|+..+..+|.
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 5678999999999999998888899988887764
No 300
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=95.56 E-value=0.09 Score=44.02 Aligned_cols=89 Identities=12% Similarity=0.186 Sum_probs=55.9
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++++|.| .|++|+.+++.|+..|..- ++.+... ..+.+.+.+.+... ..++..+..
T Consensus 4 ~~~~~~lItG~s~~iG~~la~~l~~~g~~v-~~~~~~~-----------------~~~~~~~~~~l~~~--~~~~~~~~~ 63 (247)
T PRK12935 4 LNGKVAIVTGGAKGIGKAITVALAQEGAKV-VINYNSS-----------------KEAAENLVNELGKE--GHDVYAVQA 63 (247)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHcCCEE-EEEcCCc-----------------HHHHHHHHHHHHhc--CCeEEEEEC
Confidence 4567899997 8999999999999999753 3422100 01223333444432 235667777
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+.++.+++.+... +...|+||.|..
T Consensus 64 D~~~~~~~~~~~~~~~~~-------~~~id~vi~~ag 93 (247)
T PRK12935 64 DVSKVEDANRLVEEAVNH-------FGKVDILVNNAG 93 (247)
T ss_pred CCCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 777777777666554332 346888887764
No 301
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=95.56 E-value=0.092 Score=46.66 Aligned_cols=35 Identities=20% Similarity=0.358 Sum_probs=30.4
Q ss_pred hcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 84 REFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 84 ~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.+.+|+|.|+|++|..++..+...|+.++..+|..
T Consensus 169 ~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~ 203 (343)
T PRK09880 169 QGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVS 203 (343)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCC
Confidence 57899999999999999988888999888887743
No 302
>PRK06720 hypothetical protein; Provisional
Probab=95.55 E-value=0.13 Score=41.63 Aligned_cols=36 Identities=22% Similarity=0.413 Sum_probs=29.3
Q ss_pred HHhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCC
Q 026893 82 RIREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 82 kl~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++++.++|.|. ||+|..++..|+..|. ++.++|.+
T Consensus 13 ~l~gk~~lVTGa~~GIG~aia~~l~~~G~-~V~l~~r~ 49 (169)
T PRK06720 13 KLAGKVAIVTGGGIGIGRNTALLLAKQGA-KVIVTDID 49 (169)
T ss_pred ccCCCEEEEecCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence 356778889985 5799999999999995 68888755
No 303
>COG0039 Mdh Malate/lactate dehydrogenases [Energy production and conversion]
Probab=95.55 E-value=0.027 Score=50.12 Aligned_cols=33 Identities=42% Similarity=0.692 Sum_probs=30.5
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCc-eEEEEeCC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIG-RLLLYDYD 118 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~-~i~LiD~D 118 (231)
.||.|+|+|.+|+.+|..|+.-+++ ++.|+|-.
T Consensus 1 ~KVaviGaG~VG~s~a~~l~~~~~~~el~LiDi~ 34 (313)
T COG0039 1 MKVAVIGAGNVGSSLAFLLLLQGLGSELVLIDIN 34 (313)
T ss_pred CeEEEECCChHHHHHHHHHhcccccceEEEEEcc
Confidence 4799999999999999999999999 99999954
No 304
>PRK07680 late competence protein ComER; Validated
Probab=95.54 E-value=0.068 Score=46.29 Aligned_cols=32 Identities=19% Similarity=0.509 Sum_probs=27.4
Q ss_pred cEEEEecCchHHHHHHHHHHhcC---ceEEEEeCC
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGI---GRLLLYDYD 118 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv---~~i~LiD~D 118 (231)
+|.|||+|.+|+.++..|.+.|. ..+.++|.+
T Consensus 2 ~I~iIG~G~mG~ala~~L~~~g~~~~~~v~v~~r~ 36 (273)
T PRK07680 2 NIGFIGTGNMGTILIEAFLESGAVKPSQLTITNRT 36 (273)
T ss_pred EEEEECccHHHHHHHHHHHHCCCCCcceEEEECCC
Confidence 58999999999999999999984 467777654
No 305
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=95.54 E-value=0.075 Score=47.69 Aligned_cols=102 Identities=25% Similarity=0.341 Sum_probs=63.2
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
..+|+|+||||+|-.+..-+...|.++|.=+|-..- |-+.++ .+ +.. +..+-.
T Consensus 186 G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~------------------Kl~~A~-~f-----GAT---~~vn~~ 238 (366)
T COG1062 186 GDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPE------------------KLELAK-KF-----GAT---HFVNPK 238 (366)
T ss_pred CCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHH------------------HHHHHH-hc-----CCc---eeecch
Confidence 678999999999999999999999999999985433 322221 11 111 111111
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCcc
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQ 223 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~ 223 (231)
+...+...+..+ .-.+.|++|+|+.+.+....-.+.|++.|.. +-.|+.
T Consensus 239 ~~~~vv~~i~~~---------T~gG~d~~~e~~G~~~~~~~al~~~~~~G~~-v~iGv~ 287 (366)
T COG1062 239 EVDDVVEAIVEL---------TDGGADYAFECVGNVEVMRQALEATHRGGTS-VIIGVA 287 (366)
T ss_pred hhhhHHHHHHHh---------cCCCCCEEEEccCCHHHHHHHHHHHhcCCeE-EEEecC
Confidence 000111111111 1138999999999999888878888875543 333433
No 306
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=95.53 E-value=0.076 Score=47.26 Aligned_cols=32 Identities=19% Similarity=0.387 Sum_probs=28.8
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.+|+|||+|.+|+.++..|++.|. +++++|.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~-~V~~~~r~ 34 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGA-DVTLIGRA 34 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCC-cEEEEecH
Confidence 479999999999999999999995 78888864
No 307
>cd01339 LDH-like_MDH L-lactate dehydrogenase-like malate dehydrogenase proteins. Members of this subfamily have an LDH-like structure and an MDH enzymatic activity. Some members, like MJ0490 from Methanococcus jannaschii, exhibit both MDH and LDH activities. Tetrameric MDHs, including those from phototrophic bacteria, are more similar to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH-like MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenas
Probab=95.52 E-value=0.091 Score=46.24 Aligned_cols=31 Identities=32% Similarity=0.628 Sum_probs=28.4
Q ss_pred EEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 88 VAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 88 V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
|.|||+|.+|+.++..|+..|..+++|+|.+
T Consensus 1 I~IIGaG~vG~~ia~~la~~~l~eV~L~Di~ 31 (300)
T cd01339 1 ISIIGAGNVGATLAQLLALKELGDVVLLDIV 31 (300)
T ss_pred CEEECCCHHHHHHHHHHHhCCCcEEEEEeCC
Confidence 6799999999999999999886699999977
No 308
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=95.52 E-value=0.11 Score=38.59 Aligned_cols=33 Identities=27% Similarity=0.351 Sum_probs=25.1
Q ss_pred cEEEEecCchHHHHHHHHHHh-cCce-EEEEeCCc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRC-GIGR-LLLYDYDK 119 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~-Gv~~-i~LiD~D~ 119 (231)
+|+|||+|..|...+..+.+. +--+ ..++|.+.
T Consensus 2 ~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~~~ 36 (120)
T PF01408_consen 2 RVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDPDP 36 (120)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTTTEEEEEEECSSH
T ss_pred EEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeCCH
Confidence 799999999999999988887 3223 34666553
No 309
>PRK07856 short chain dehydrogenase; Provisional
Probab=95.51 E-value=0.065 Score=45.19 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=29.9
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
+++++++|.| .||+|..+++.|+..|. +++++|.+.
T Consensus 4 ~~~k~~lItGas~gIG~~la~~l~~~g~-~v~~~~r~~ 40 (252)
T PRK07856 4 LTGRVVLVTGGTRGIGAGIARAFLAAGA-TVVVCGRRA 40 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEeCCh
Confidence 5578899998 67999999999999997 677877653
No 310
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=95.51 E-value=0.11 Score=43.02 Aligned_cols=88 Identities=15% Similarity=0.237 Sum_probs=52.4
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++|+|.| .|++|.++++.|++.|.. ++++....- .+.+.+.+.+... ..++..+..
T Consensus 3 ~~~~~vlItG~sg~iG~~l~~~l~~~G~~-v~~~~~~~~-----------------~~~~~~~~~~~~~--~~~~~~~~~ 62 (248)
T PRK05557 3 LEGKVALVTGASRGIGRAIAERLAAQGAN-VVINYASSE-----------------AGAEALVAEIGAL--GGKALAVQG 62 (248)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCE-EEEEeCCch-----------------hHHHHHHHHHHhc--CCceEEEEc
Confidence 3467899997 689999999999999975 434332111 1122223333322 334556666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++.+.+.+...++.+... +.+.|.||.+.
T Consensus 63 Dl~~~~~~~~~~~~~~~~-------~~~id~vi~~a 91 (248)
T PRK05557 63 DVSDAESVERAVDEAKAE-------FGGVDILVNNA 91 (248)
T ss_pred CCCCHHHHHHHHHHHHHH-------cCCCCEEEECC
Confidence 777666666555443221 24678888775
No 311
>PRK06129 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=95.51 E-value=0.075 Score=46.92 Aligned_cols=33 Identities=39% Similarity=0.536 Sum_probs=29.8
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
.+|.|||+|-.|+.++..|++.|. +++++|.+.
T Consensus 3 ~~V~VIG~G~mG~~iA~~la~~G~-~V~v~d~~~ 35 (308)
T PRK06129 3 GSVAIIGAGLIGRAWAIVFARAGH-EVRLWDADP 35 (308)
T ss_pred cEEEEECccHHHHHHHHHHHHCCC-eeEEEeCCH
Confidence 379999999999999999999997 799999764
No 312
>PRK15461 NADH-dependent gamma-hydroxybutyrate dehydrogenase; Provisional
Probab=95.50 E-value=0.048 Score=47.95 Aligned_cols=122 Identities=16% Similarity=0.169 Sum_probs=69.6
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
.+|.|||+|-.|+.++.+|++.|. +++++|.+.-....+.. .|-..+....+.+. ..++.+.+.+..
T Consensus 2 ~~Ig~IGlG~mG~~mA~~l~~~G~-~V~v~d~~~~~~~~~~~-------~g~~~~~s~~~~~~--~aDvVi~~vp~~--- 68 (296)
T PRK15461 2 AAIAFIGLGQMGSPMASNLLKQGH-QLQVFDVNPQAVDALVD-------KGATPAASPAQAAA--GAEFVITMLPNG--- 68 (296)
T ss_pred CeEEEEeeCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH-------cCCcccCCHHHHHh--cCCEEEEecCCH---
Confidence 379999999999999999999996 78898875432222111 12222222222222 235555444432
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEcc-CCHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV-DNYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~-D~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
......+.. ..... ..+..-.++|+++ -+...-..+.+.+.+.++.|+|+.++|.
T Consensus 69 -~~~~~vl~~--~~~i~--~~l~~g~lvid~sT~~p~~~~~l~~~l~~~g~~~ldapV~g~ 124 (296)
T PRK15461 69 -DLVRSVLFG--ENGVC--EGLSRDALVIDMSTIHPLQTDKLIADMQAKGFSMMDVPVGRT 124 (296)
T ss_pred -HHHHHHHcC--cccHh--hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEEccCCCC
Confidence 112222110 00000 1123334566654 4556667888888999999999998774
No 313
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=95.50 E-value=0.088 Score=45.79 Aligned_cols=32 Identities=22% Similarity=0.278 Sum_probs=28.8
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
+|.|||+|.+|+.++..|.+.|. +++++|.+.
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~-~V~~~d~~~ 33 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGH-TVYGVSRRE 33 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCC-EEEEEECCH
Confidence 69999999999999999999986 789998753
No 314
>PRK06947 glucose-1-dehydrogenase; Provisional
Probab=95.48 E-value=0.12 Score=43.17 Aligned_cols=86 Identities=9% Similarity=0.107 Sum_probs=52.7
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
++|+|.| .||+|..+++.|++.|.. +.+.+... ..+.+.+.+.+.... .++..+..+++
T Consensus 3 k~ilItGas~giG~~la~~l~~~g~~-v~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~Dl~ 62 (248)
T PRK06947 3 KVVLITGASRGIGRATAVLAAARGWS-VGINYARD-----------------AAAAEETADAVRAAG--GRACVVAGDVA 62 (248)
T ss_pred cEEEEeCCCCcHHHHHHHHHHHCCCE-EEEEeCCC-----------------HHHHHHHHHHHHhcC--CcEEEEEeccC
Confidence 5788887 579999999999999974 44433211 113444444554432 24556677777
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
+.+.+..+++.+... +.+.|+||.|..
T Consensus 63 ~~~~~~~~~~~~~~~-------~~~id~li~~ag 89 (248)
T PRK06947 63 NEADVIAMFDAVQSA-------FGRLDALVNNAG 89 (248)
T ss_pred CHHHHHHHHHHHHHh-------cCCCCEEEECCc
Confidence 666666655543321 246788886653
No 315
>TIGR00715 precor6x_red precorrin-6x reductase. This enzyme was found to be a monomer by gel filtration.
Probab=95.47 E-value=0.18 Score=43.72 Aligned_cols=96 Identities=17% Similarity=0.246 Sum_probs=58.9
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
.+|+|+|+-|-|..+++.|...|..-+...=.+ -|... +... +... .+....+.
T Consensus 1 m~ILvlGGT~egr~la~~L~~~g~~v~~s~~t~----------------~~~~~-------~~~~-g~~~--v~~g~l~~ 54 (256)
T TIGR00715 1 MTVLLMGGTVDSRAIAKGLIAQGIEILVTVTTS----------------EGKHL-------YPIH-QALT--VHTGALDP 54 (256)
T ss_pred CeEEEEechHHHHHHHHHHHhCCCeEEEEEccC----------------Ccccc-------cccc-CCce--EEECCCCH
Confidence 379999987789999999998885333321111 01101 1111 1112 22233332
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHH--HHHHHHHHHcCCcEEEe
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEAR--MAVNQACNELNQTWMES 220 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r--~~i~~~~~~~~~p~i~~ 220 (231)
+.+..|+.. .++|+|||++.++... ..+.+.|.+.|+||+-.
T Consensus 55 -~~l~~~l~~------------~~i~~VIDAtHPfA~~is~~a~~a~~~~~ipylR~ 98 (256)
T TIGR00715 55 -QELREFLKR------------HSIDILVDATHPFAAQITTNATAVCKELGIPYVRF 98 (256)
T ss_pred -HHHHHHHHh------------cCCCEEEEcCCHHHHHHHHHHHHHHHHhCCcEEEE
Confidence 334444321 4789999999999765 56889999999999865
No 316
>PRK12745 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.46 E-value=0.15 Score=42.88 Aligned_cols=86 Identities=17% Similarity=0.254 Sum_probs=54.3
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
++.|+|.| .|++|+++++.|+..|. ++.++|...- .+.+...+.+... ..++..+..++
T Consensus 2 ~k~vlItG~sg~iG~~la~~L~~~g~-~vi~~~r~~~-----------------~~~~~~~~~~~~~--~~~~~~~~~D~ 61 (256)
T PRK12745 2 RPVALVTGGRRGIGLGIARALAAAGF-DLAINDRPDD-----------------EELAATQQELRAL--GVEVIFFPADV 61 (256)
T ss_pred CcEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecCch-----------------hHHHHHHHHHHhc--CCceEEEEecC
Confidence 35688887 78999999999999997 6677663210 1122223333322 23456777778
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++.+.+..+++.+... +...|+||.|.
T Consensus 62 ~~~~~~~~~~~~~~~~-------~~~id~vi~~a 88 (256)
T PRK12745 62 ADLSAHEAMLDAAQAA-------WGRIDCLVNNA 88 (256)
T ss_pred CCHHHHHHHHHHHHHh-------cCCCCEEEECC
Confidence 7777777666554332 24678888775
No 317
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.42 E-value=0.074 Score=47.32 Aligned_cols=105 Identities=24% Similarity=0.393 Sum_probs=65.7
Q ss_pred cChhHHHHHHh-cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHH--Hhh
Q 026893 74 MGIVENYERIR-EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTL--ADI 150 (231)
Q Consensus 74 ~g~~~~~~kl~-~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l--~~~ 150 (231)
+|......+++ +++|+|+|+|++|..+++---..|.++|.=+|-. ..|-+.+++.= .-+
T Consensus 181 ~GAa~~~Akv~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN------------------~~Kf~~ak~fGaTe~i 242 (375)
T KOG0022|consen 181 YGAAWNTAKVEPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDIN------------------PDKFEKAKEFGATEFI 242 (375)
T ss_pred chhhhhhcccCCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecC------------------HHHHHHHHhcCcceec
Confidence 33333345554 5789999999999999999999999999998832 22333332210 011
Q ss_pred CCCcEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHc-CC
Q 026893 151 NPDVVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNEL-NQ 215 (231)
Q Consensus 151 np~v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~-~~ 215 (231)
||. +.. ..++..+..+ .-.++|+-|+|+.+.++.+.-.+.|++- |+
T Consensus 243 Np~--------d~~--~~i~evi~Em---------TdgGvDysfEc~G~~~~m~~al~s~h~GwG~ 289 (375)
T KOG0022|consen 243 NPK--------DLK--KPIQEVIIEM---------TDGGVDYSFECIGNVSTMRAALESCHKGWGK 289 (375)
T ss_pred Chh--------hcc--ccHHHHHHHH---------hcCCceEEEEecCCHHHHHHHHHHhhcCCCe
Confidence 221 000 0111111111 1158999999999999999988888864 44
No 318
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.42 E-value=0.13 Score=45.83 Aligned_cols=88 Identities=14% Similarity=0.319 Sum_probs=68.8
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
.+.++.++|.| -.|+|.++|+.|++.| .++++.-.|. .|++.+++.+++-.+...+..+.
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~G-a~Vv~~~R~~------------------~~~~~~~~~i~~~~~~~~i~~~~ 92 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRG-AHVVLACRNE------------------ERGEEAKEQIQKGKANQKIRVIQ 92 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCC-CEEEEEeCCH------------------HHHHHHHHHHHhcCCCCceEEEE
Confidence 33446677777 5699999999999999 7888865444 38899999999977888888999
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEE
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLS 195 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~ 195 (231)
.++.+...+..|.+.+.... .+.|+.|.
T Consensus 93 lDLssl~SV~~fa~~~~~~~-------~~ldvLIn 120 (314)
T KOG1208|consen 93 LDLSSLKSVRKFAEEFKKKE-------GPLDVLIN 120 (314)
T ss_pred CCCCCHHHHHHHHHHHHhcC-------CCccEEEe
Confidence 99999999999987765433 46666664
No 319
>TIGR01759 MalateDH-SF1 malate dehydrogenase. This model represents a family of malate dehydrogenases in bacteria and eukaryotes which utilize either NAD or NADP depending on the species and context. MDH interconverts malate and oxaloacetate and is a part of the citric acid cycle as well as the C4 cycle in certain photosynthetic organisms.
Probab=95.42 E-value=0.035 Score=49.67 Aligned_cols=32 Identities=28% Similarity=0.395 Sum_probs=28.5
Q ss_pred CcEEEEec-CchHHHHHHHHHHhcC-c-----eEEEEeC
Q 026893 86 FSVAIVGV-GGVGSVAAEMLTRCGI-G-----RLLLYDY 117 (231)
Q Consensus 86 ~~V~IvG~-GgvGs~ia~~La~~Gv-~-----~i~LiD~ 117 (231)
.||.|||+ |.+|+.++..|+..|+ + +|+|+|-
T Consensus 4 ~KV~IIGa~G~VG~~~a~~l~~~~~~~~~~~~el~L~Di 42 (323)
T TIGR01759 4 VRVAVTGAAGQIGYSLLFRIASGELFGKDQPVVLHLLDI 42 (323)
T ss_pred eEEEEECCCcHHHHHHHHHHHhCCcccCCCccEEEEEec
Confidence 48999998 9999999999999887 5 7999884
No 320
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=95.38 E-value=0.054 Score=50.97 Aligned_cols=35 Identities=37% Similarity=0.651 Sum_probs=31.5
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++++++|+|+||+|..++..|+..|+ +++++|.+
T Consensus 330 ~~~k~vlIiGaGgiG~aia~~L~~~G~-~V~i~~R~ 364 (477)
T PRK09310 330 LNNQHVAIVGAGGAAKAIATTLARAGA-ELLIFNRT 364 (477)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 567899999999999999999999998 89888754
No 321
>PRK09134 short chain dehydrogenase; Provisional
Probab=95.37 E-value=0.13 Score=43.58 Aligned_cols=87 Identities=8% Similarity=0.113 Sum_probs=53.3
Q ss_pred hcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 84 REFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 84 ~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
.+++++|.| .|++|.++++.|++.|. ++.+++... ..+.+.+.+.+.... ..++.+..+
T Consensus 8 ~~k~vlItGas~giG~~la~~l~~~g~-~v~~~~~~~-----------------~~~~~~~~~~~~~~~--~~~~~~~~D 67 (258)
T PRK09134 8 APRAALVTGAARRIGRAIALDLAAHGF-DVAVHYNRS-----------------RDEAEALAAEIRALG--RRAVALQAD 67 (258)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCC-----------------HHHHHHHHHHHHhcC--CeEEEEEcC
Confidence 356788887 67999999999999997 444443211 013334444444433 345566667
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+++.+.+..+++.+... +...|+||.|.
T Consensus 68 l~d~~~~~~~~~~~~~~-------~~~iD~vi~~a 95 (258)
T PRK09134 68 LADEAEVRALVARASAA-------LGPITLLVNNA 95 (258)
T ss_pred CCCHHHHHHHHHHHHHH-------cCCCCEEEECC
Confidence 77666666655443221 24678888775
No 322
>PRK06128 oxidoreductase; Provisional
Probab=95.37 E-value=0.1 Score=45.53 Aligned_cols=92 Identities=14% Similarity=0.174 Sum_probs=58.8
Q ss_pred HHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 81 ERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 81 ~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
.++++++|+|.| .||+|..+++.|++.|. ++.+.+.+.- ..+.+.+.+.+... ..++..+
T Consensus 51 ~~l~~k~vlITGas~gIG~~~a~~l~~~G~-~V~i~~~~~~----------------~~~~~~~~~~~~~~--~~~~~~~ 111 (300)
T PRK06128 51 GRLQGRKALITGADSGIGRATAIAFAREGA-DIALNYLPEE----------------EQDAAEVVQLIQAE--GRKAVAL 111 (300)
T ss_pred cccCCCEEEEecCCCcHHHHHHHHHHHcCC-EEEEEeCCcc----------------hHHHHHHHHHHHHc--CCeEEEE
Confidence 457788999998 68999999999999997 4554432110 01233344444443 3345567
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
..++.+.+.+..+++.+... +.+.|+||.+..
T Consensus 112 ~~Dl~~~~~v~~~~~~~~~~-------~g~iD~lV~nAg 143 (300)
T PRK06128 112 PGDLKDEAFCRQLVERAVKE-------LGGLDILVNIAG 143 (300)
T ss_pred ecCCCCHHHHHHHHHHHHHH-------hCCCCEEEECCc
Confidence 77888777777766554322 357888887653
No 323
>PRK10675 UDP-galactose-4-epimerase; Provisional
Probab=95.34 E-value=0.28 Score=43.18 Aligned_cols=29 Identities=28% Similarity=0.449 Sum_probs=24.8
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEe
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYD 116 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD 116 (231)
+|+|.| .|.+|+++++.|+..|. +++++|
T Consensus 2 ~vlVtGatG~iG~~l~~~L~~~g~-~V~~~~ 31 (338)
T PRK10675 2 RVLVTGGSGYIGSHTCVQLLQNGH-DVVILD 31 (338)
T ss_pred eEEEECCCChHHHHHHHHHHHCCC-eEEEEe
Confidence 689998 69999999999999986 566665
No 324
>PRK06701 short chain dehydrogenase; Provisional
Probab=95.34 E-value=0.13 Score=44.74 Aligned_cols=91 Identities=12% Similarity=0.169 Sum_probs=57.1
Q ss_pred HHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 81 ERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 81 ~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
.++++++++|.| .||+|+.+++.|++.|. ++++++.+.-. ..+.+.+.+... ..++..+
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~-~V~l~~r~~~~-----------------~~~~~~~~~~~~--~~~~~~~ 101 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGA-DIAIVYLDEHE-----------------DANETKQRVEKE--GVKCLLI 101 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEeCCcch-----------------HHHHHHHHHHhc--CCeEEEE
Confidence 456678999998 68999999999999996 56676543210 122223333322 3355566
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
..++++.+.++.++..+... +..+|+||.|..
T Consensus 102 ~~Dl~~~~~~~~~~~~i~~~-------~~~iD~lI~~Ag 133 (290)
T PRK06701 102 PGDVSDEAFCKDAVEETVRE-------LGRLDILVNNAA 133 (290)
T ss_pred EccCCCHHHHHHHHHHHHHH-------cCCCCEEEECCc
Confidence 77777766666665543322 246788886643
No 325
>PRK06545 prephenate dehydrogenase; Validated
Probab=95.34 E-value=0.074 Score=48.09 Aligned_cols=33 Identities=30% Similarity=0.503 Sum_probs=28.7
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
.+|+|||+|.+|+.++..|.+.|. .+.++|.|.
T Consensus 1 ~~I~iIG~GliG~siA~~L~~~G~-~v~i~~~~~ 33 (359)
T PRK06545 1 RTVLIVGLGLIGGSLALAIKAAGP-DVFIIGYDP 33 (359)
T ss_pred CeEEEEEeCHHHHHHHHHHHhcCC-CeEEEEeCC
Confidence 369999999999999999999997 677887664
No 326
>PLN02166 dTDP-glucose 4,6-dehydratase
Probab=95.34 E-value=0.13 Score=47.81 Aligned_cols=34 Identities=24% Similarity=0.370 Sum_probs=28.3
Q ss_pred hcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 84 REFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 84 ~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+..+|+|.| .|-+|+++++.|...|. +++.+|..
T Consensus 119 ~~mkILVTGatGFIGs~Lv~~Ll~~G~-~V~~ldr~ 153 (436)
T PLN02166 119 KRLRIVVTGGAGFVGSHLVDKLIGRGD-EVIVIDNF 153 (436)
T ss_pred CCCEEEEECCccHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 356899998 79999999999999886 67777754
No 327
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=95.33 E-value=0.027 Score=45.75 Aligned_cols=41 Identities=29% Similarity=0.486 Sum_probs=34.6
Q ss_pred HHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccc
Q 026893 80 YERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVE 121 (231)
Q Consensus 80 ~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~ 121 (231)
...+.+++|.|+|+|.+|..+++.|...|. ++..+|...-.
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~-~V~~~d~~~~~ 71 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGM-RVIGYDRSPKP 71 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT--EEEEEESSCHH
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCc-eeEEecccCCh
Confidence 457889999999999999999999999998 88888876653
No 328
>PRK10537 voltage-gated potassium channel; Provisional
Probab=95.33 E-value=0.18 Score=46.28 Aligned_cols=89 Identities=16% Similarity=0.057 Sum_probs=60.1
Q ss_pred hcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 84 REFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 84 ~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
++.+|+|+|.|.+|..+++.|...|. .++++|.|..+.. . ..+.. ....+.
T Consensus 239 ~k~HvII~G~g~lg~~v~~~L~~~g~-~vvVId~d~~~~~-----------------------~---~~g~~--vI~GD~ 289 (393)
T PRK10537 239 RKDHFIICGHSPLAINTYLGLRQRGQ-AVTVIVPLGLEHR-----------------------L---PDDAD--LIPGDS 289 (393)
T ss_pred cCCeEEEECCChHHHHHHHHHHHCCC-CEEEEECchhhhh-----------------------c---cCCCc--EEEeCC
Confidence 36789999999999999999998886 7888887633100 0 01122 333444
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcC
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELN 214 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~ 214 (231)
++.+.+++ ..+++++.|+.++++.+....+...+++.+
T Consensus 290 td~e~L~~-------------AgI~~A~aVI~~t~dD~~Nl~ivL~ar~l~ 327 (393)
T PRK10537 290 SDSAVLKK-------------AGAARARAILALRDNDADNAFVVLAAKEMS 327 (393)
T ss_pred CCHHHHHh-------------cCcccCCEEEEcCCChHHHHHHHHHHHHhC
Confidence 44333332 246788999998888777777777777765
No 329
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=95.29 E-value=0.17 Score=44.15 Aligned_cols=30 Identities=27% Similarity=0.412 Sum_probs=26.9
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeC
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
+|+|+|+|++|+.++..|++.|. ++++++.
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~-~V~~~~r 31 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGR-DVTFLVR 31 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCC-ceEEEec
Confidence 69999999999999999999985 6888774
No 330
>PRK08264 short chain dehydrogenase; Validated
Probab=95.28 E-value=0.078 Score=44.12 Aligned_cols=36 Identities=25% Similarity=0.342 Sum_probs=31.1
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+.+++|+|+| .|++|..+++.|++.|..++.+++.+
T Consensus 4 ~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~r~ 40 (238)
T PRK08264 4 IKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAARD 40 (238)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEecC
Confidence 4567899998 69999999999999998788888754
No 331
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.27 E-value=0.076 Score=46.89 Aligned_cols=34 Identities=26% Similarity=0.425 Sum_probs=29.9
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
..+|.|+|+|..|+.++..|+..|. +++++|.+.
T Consensus 4 ~m~I~iiG~G~~G~~lA~~l~~~G~-~V~~~~r~~ 37 (308)
T PRK14619 4 PKTIAILGAGAWGSTLAGLASANGH-RVRVWSRRS 37 (308)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 3579999999999999999999996 788988653
No 332
>PRK00811 spermidine synthase; Provisional
Probab=95.27 E-value=0.31 Score=42.69 Aligned_cols=36 Identities=25% Similarity=0.402 Sum_probs=27.6
Q ss_pred hcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCcc
Q 026893 84 REFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKV 120 (231)
Q Consensus 84 ~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v 120 (231)
..++|+++|+|+ |+.....|...++.+++++|-|.-
T Consensus 76 ~p~~VL~iG~G~-G~~~~~~l~~~~~~~V~~VEid~~ 111 (283)
T PRK00811 76 NPKRVLIIGGGD-GGTLREVLKHPSVEKITLVEIDER 111 (283)
T ss_pred CCCEEEEEecCc-hHHHHHHHcCCCCCEEEEEeCCHH
Confidence 367899999985 665555565568999999998765
No 333
>PRK07634 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.27 E-value=0.14 Score=43.35 Aligned_cols=25 Identities=12% Similarity=0.247 Sum_probs=22.5
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcC
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGI 109 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv 109 (231)
..+|.|||+|..|+.++..|.+.|.
T Consensus 4 ~~kI~iIG~G~mg~ala~~l~~~~~ 28 (245)
T PRK07634 4 KHRILFIGAGRMAEAIFSGLLKTSK 28 (245)
T ss_pred CCeEEEECcCHHHHHHHHHHHhCCC
Confidence 5689999999999999999998873
No 334
>PRK09987 dTDP-4-dehydrorhamnose reductase; Provisional
Probab=95.25 E-value=0.1 Score=45.56 Aligned_cols=106 Identities=21% Similarity=0.245 Sum_probs=58.1
Q ss_pred cEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 87 SVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
+|+|.|+ |-+|+++++.|...| +++.+|...- +...|+- ..+.+.+.+....|++.|+.-.. ..
T Consensus 2 ~iLVtG~~GfiGs~l~~~L~~~g--~V~~~~~~~~---------~~~~Dl~--d~~~~~~~~~~~~~D~Vih~Aa~--~~ 66 (299)
T PRK09987 2 NILLFGKTGQVGWELQRALAPLG--NLIALDVHST---------DYCGDFS--NPEGVAETVRKIRPDVIVNAAAH--TA 66 (299)
T ss_pred eEEEECCCCHHHHHHHHHhhccC--CEEEeccccc---------cccCCCC--CHHHHHHHHHhcCCCEEEECCcc--CC
Confidence 7999985 999999999999888 5777774310 1112332 23344555555556665543221 10
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCccCce
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQSSS 226 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~g~~ 226 (231)
..... ..++.. ...|...-..+.++|++.+++++...+..-+
T Consensus 67 ~~~~~-----------------~~~~~~--~~~N~~~~~~l~~aa~~~g~~~v~~Ss~~Vy 108 (299)
T PRK09987 67 VDKAE-----------------SEPEFA--QLLNATSVEAIAKAANEVGAWVVHYSTDYVF 108 (299)
T ss_pred cchhh-----------------cCHHHH--HHHHHHHHHHHHHHHHHcCCeEEEEccceEE
Confidence 00000 000000 0012333356888999999999887765444
No 335
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.24 E-value=0.16 Score=43.30 Aligned_cols=87 Identities=15% Similarity=0.198 Sum_probs=52.1
Q ss_pred HHhcCcEEEEecC---chHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEE
Q 026893 82 RIREFSVAIVGVG---GVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLES 158 (231)
Q Consensus 82 kl~~~~V~IvG~G---gvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~ 158 (231)
+++++.++|.|.+ |+|..+++.|++.|. ++.+.+.+. +.+...+.+.+.... . ..
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~-~v~~~~r~~-------------------~~~~~~~~l~~~~g~-~-~~ 62 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGA-ELWFTYQSE-------------------VLEKRVKPLAEEIGC-N-FV 62 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCC-EEEEEeCch-------------------HHHHHHHHHHHhcCC-c-eE
Confidence 4567788999986 799999999999997 576765321 111111122211111 1 23
Q ss_pred EeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 159 FTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+..++++.+..+.+++.+... +...|++|.+.
T Consensus 63 ~~~Dv~~~~~v~~~~~~~~~~-------~g~iDilVnna 94 (260)
T PRK06603 63 SELDVTNPKSISNLFDDIKEK-------WGSFDFLLHGM 94 (260)
T ss_pred EEccCCCHHHHHHHHHHHHHH-------cCCccEEEEcc
Confidence 456777777777776654332 24677777654
No 336
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=95.22 E-value=0.17 Score=44.85 Aligned_cols=35 Identities=23% Similarity=0.116 Sum_probs=28.5
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++++|+|.| .|++|+++++.|...|. +++++|.+
T Consensus 4 ~~~~~vlVTGatGfiG~~l~~~L~~~G~-~V~~~~r~ 39 (340)
T PLN02653 4 PPRKVALITGITGQDGSYLTEFLLSKGY-EVHGIIRR 39 (340)
T ss_pred CCCCEEEEECCCCccHHHHHHHHHHCCC-EEEEEecc
Confidence 3467899998 58999999999999997 57766643
No 337
>PRK09730 putative NAD(P)-binding oxidoreductase; Provisional
Probab=95.21 E-value=0.21 Score=41.53 Aligned_cols=85 Identities=9% Similarity=0.189 Sum_probs=54.5
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEE-eCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLY-DYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~Li-D~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
+.|+|.| .|++|..+++.|+..|.. +.++ +.+ ..+.+.....+... ...+..+..++
T Consensus 2 ~~~lItGa~g~iG~~l~~~l~~~g~~-v~~~~~~~------------------~~~~~~~~~~~~~~--~~~~~~~~~D~ 60 (247)
T PRK09730 2 AIALVTGGSRGIGRATALLLAQEGYT-VAVNYQQN------------------LHAAQEVVNLITQA--GGKAFVLQADI 60 (247)
T ss_pred CEEEEeCCCchHHHHHHHHHHHCCCE-EEEEeCCC------------------hHHHHHHHHHHHhC--CCeEEEEEccC
Confidence 4678887 589999999999999974 4332 111 12334444444443 33455677888
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.+.+.+..++..+... ..+.|+||.+..
T Consensus 61 ~d~~~i~~~~~~~~~~-------~~~id~vi~~ag 88 (247)
T PRK09730 61 SDENQVVAMFTAIDQH-------DEPLAALVNNAG 88 (247)
T ss_pred CCHHHHHHHHHHHHHh-------CCCCCEEEECCC
Confidence 8777777776654332 357788887765
No 338
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=95.21 E-value=0.096 Score=45.73 Aligned_cols=122 Identities=14% Similarity=0.202 Sum_probs=67.1
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
.+|.|||+|.+|+.++..|++.|. ++.++|.+.-....+.. .|..-+....+.+. ..++.+.+.+...
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~-~v~~~d~~~~~~~~~~~-------~g~~~~~~~~e~~~--~~d~vi~~vp~~~-- 70 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGY-SLVVYDRNPEAVAEVIA-------AGAETASTAKAVAE--QCDVIITMLPNSP-- 70 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH-------CCCeecCCHHHHHh--cCCEEEEeCCCHH--
Confidence 479999999999999999999986 67788765321111100 01111111222222 3466655554321
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccC-CHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD-NYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D-~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
.....+.. ...+. ..+.+-.+|++++. +......+.+.+.+.++.|+++.+.|.
T Consensus 71 --~~~~v~~~--~~~~~--~~~~~g~iiid~st~~~~~~~~l~~~~~~~g~~~~d~pv~g~ 125 (296)
T PRK11559 71 --HVKEVALG--ENGII--EGAKPGTVVIDMSSIAPLASREIAAALKAKGIEMLDAPVSGG 125 (296)
T ss_pred --HHHHHHcC--cchHh--hcCCCCcEEEECCCCCHHHHHHHHHHHHHcCCcEEEcCCCCC
Confidence 11111100 00000 11234456776643 445567788888888999999887753
No 339
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=95.21 E-value=0.029 Score=48.97 Aligned_cols=36 Identities=22% Similarity=0.362 Sum_probs=32.8
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCcc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKV 120 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v 120 (231)
+++|+|+|+||.+..++..|+..|+.+|++++.+.=
T Consensus 122 ~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR~~~ 157 (272)
T PRK12550 122 DLVVALRGSGGMAKAVAAALRDAGFTDGTIVARNEK 157 (272)
T ss_pred CCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeCCHH
Confidence 358999999999999999999999999999997753
No 340
>PRK07985 oxidoreductase; Provisional
Probab=95.21 E-value=0.15 Score=44.51 Aligned_cols=90 Identities=11% Similarity=0.158 Sum_probs=57.0
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
++++++++|.| .||+|..+++.|++.|. ++.+.+.+.- ..+.+.+.+.+... ..++..+.
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~-~Vi~~~~~~~----------------~~~~~~~~~~~~~~--~~~~~~~~ 106 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGA-DVAISYLPVE----------------EEDAQDVKKIIEEC--GRKAVLLP 106 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCC-EEEEecCCcc----------------hhhHHHHHHHHHHc--CCeEEEEE
Confidence 46778999998 58999999999999997 4555542210 01233344444433 33455667
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
.++++.+.+..+++.+... +...|++|.+.
T Consensus 107 ~Dl~~~~~~~~~~~~~~~~-------~g~id~lv~~A 136 (294)
T PRK07985 107 GDLSDEKFARSLVHEAHKA-------LGGLDIMALVA 136 (294)
T ss_pred ccCCCHHHHHHHHHHHHHH-------hCCCCEEEECC
Confidence 7787777777666554322 34678877654
No 341
>PRK07775 short chain dehydrogenase; Provisional
Probab=95.17 E-value=0.21 Score=42.85 Aligned_cols=87 Identities=16% Similarity=0.239 Sum_probs=54.1
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
...+.++|.| .|++|.++++.|+..|. ++.+++...- +.+.+.+.+... ..+++.+..
T Consensus 8 ~~~~~vlVtGa~g~iG~~la~~L~~~G~-~V~~~~r~~~------------------~~~~~~~~~~~~--~~~~~~~~~ 66 (274)
T PRK07775 8 PDRRPALVAGASSGIGAATAIELAAAGF-PVALGARRVE------------------KCEELVDKIRAD--GGEAVAFPL 66 (274)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHHHHhc--CCeEEEEEC
Confidence 3456789998 68999999999999997 5666553211 222233333332 234556677
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..+++.+.. .+.+.|+||.+.
T Consensus 67 Dl~~~~~~~~~~~~~~~-------~~~~id~vi~~A 95 (274)
T PRK07775 67 DVTDPDSVKSFVAQAEE-------ALGEIEVLVSGA 95 (274)
T ss_pred CCCCHHHHHHHHHHHHH-------hcCCCCEEEECC
Confidence 77777777666654322 124677777665
No 342
>TIGR02279 PaaC-3OHAcCoADH 3-hydroxyacyl-CoA dehydrogenase PaaC. This 3-hydroxyacyl-CoA dehydrogenase is involved in the degradation of phenylacetic acid, presumably in steps following the opening of the phenyl ring. The sequences included in this model are all found in aparrent operons with other related genes such as paaA, paaB, paaD, paaE, paaF and paaN. Some genomes contain these other genes without an apparent paaC in the same operon - possibly in these cases a different dehydrogenase involved in fatty acid degradation may fill in the needed activity. This enzyme has domains which are members of the pfam02737 and pfam00725 families.
Probab=95.16 E-value=0.081 Score=50.16 Aligned_cols=34 Identities=32% Similarity=0.617 Sum_probs=29.6
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
-++|.|||+|..|+.+|.+|++.|. +++++|.+.
T Consensus 5 ~~kV~VIGaG~MG~gIA~~la~aG~-~V~l~d~~~ 38 (503)
T TIGR02279 5 VVTVAVIGAGAMGAGIAQVAASAGH-QVLLYDIRA 38 (503)
T ss_pred ccEEEEECcCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 3579999999999999999999996 788888553
No 343
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=95.15 E-value=0.081 Score=46.07 Aligned_cols=34 Identities=35% Similarity=0.515 Sum_probs=25.6
Q ss_pred cCcEEEEecCchHHHHHHHHHHh--cCceEEEEeCC
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRC--GIGRLLLYDYD 118 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~--Gv~~i~LiD~D 118 (231)
..+|.|||+|.+|..+++.|... ++.-..++|.+
T Consensus 6 ~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr~ 41 (271)
T PRK13302 6 ELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVRD 41 (271)
T ss_pred eeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECCC
Confidence 46899999999999999999874 44323355654
No 344
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=95.14 E-value=0.1 Score=45.54 Aligned_cols=120 Identities=13% Similarity=0.161 Sum_probs=67.2
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccCc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTV 166 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~ 166 (231)
+|.|||+|-+|+.++..|++.|. +++++|.+.-....+.. .|...+....+.+. ..++.+.+.+..
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~-~V~~~dr~~~~~~~~~~-------~g~~~~~~~~~~~~--~aDivi~~vp~~---- 66 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGY-QLHVTTIGPEVADELLA-------AGAVTAETARQVTE--QADVIFTMVPDS---- 66 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCC-eEEEEcCCHHHHHHHHH-------CCCcccCCHHHHHh--cCCEEEEecCCH----
Confidence 58999999999999999999996 78888866422221111 12212212222222 346666665532
Q ss_pred cchHHHHhhhhccCCCCCCCCCCCcEEEEccC-CHHHHHHHHHHHHHcCCcEEEeCccC
Q 026893 167 QGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD-NYEARMAVNQACNELNQTWMESGKQS 224 (231)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D-~~~~r~~i~~~~~~~~~p~i~~g~~g 224 (231)
......+. ...... ....+-.+|++++. +...-..+.+.+.+.+..|+++.+.|
T Consensus 67 ~~~~~v~~--~~~~~~--~~~~~g~iivd~st~~~~~~~~l~~~l~~~g~~~~~~pv~g 121 (291)
T TIGR01505 67 PQVEEVAF--GENGII--EGAKPGKTLVDMSSISPIESKRFAKAVKEKGIDYLDAPVSG 121 (291)
T ss_pred HHHHHHHc--CcchHh--hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEecCCCC
Confidence 11111110 000000 11233456777643 44445678888888899999987664
No 345
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=95.13 E-value=0.1 Score=44.49 Aligned_cols=35 Identities=14% Similarity=0.284 Sum_probs=29.5
Q ss_pred HHhcCcEEEEec---CchHHHHHHHHHHhcCceEEEEeC
Q 026893 82 RIREFSVAIVGV---GGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 82 kl~~~~V~IvG~---GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
++++++++|.|. +|+|.++++.|++.|. ++.+.|.
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~-~v~l~~r 41 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGA-EVVLTGF 41 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCC-EEEEecC
Confidence 366788999996 7999999999999997 5777664
No 346
>cd02201 FtsZ_type1 FtsZ is a GTPase that is similar to the eukaryotic tubulins and is essential for cell division in prokaryotes. FtsZ is capable of polymerizing in a GTP-driven process into structures similar to those formed by tubulin. FtsZ forms a ring-shaped septum at the site of bacterial cell division, which is required for constriction of cell membrane and cell envelope to yield two daughter cells.
Probab=95.11 E-value=0.12 Score=45.67 Aligned_cols=37 Identities=27% Similarity=0.523 Sum_probs=30.6
Q ss_pred cEEEEecCchHHHHHHHHHHhcCc--eEEEEeCCccccc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIG--RLLLYDYDKVELA 123 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~--~i~LiD~D~v~~~ 123 (231)
+|.|||+||-|+.++..|.+.|+. ++..+|.|.-...
T Consensus 2 ~i~viGvGg~G~n~v~~l~~~~~~~~~~~a~ntD~~~L~ 40 (304)
T cd02201 2 KIKVIGVGGGGGNAVNRMIESGLEGVEFIAANTDAQALA 40 (304)
T ss_pred eEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCHHHHh
Confidence 689999999999999999999986 5666787774333
No 347
>PRK08374 homoserine dehydrogenase; Provisional
Probab=95.11 E-value=0.095 Score=47.10 Aligned_cols=21 Identities=43% Similarity=0.716 Sum_probs=19.4
Q ss_pred CcEEEEecCchHHHHHHHHHH
Q 026893 86 FSVAIVGVGGVGSVAAEMLTR 106 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~ 106 (231)
.+|+|+|+|.||+.+++.|..
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~ 23 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAE 23 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHH
Confidence 589999999999999999877
No 348
>TIGR01472 gmd GDP-mannose 4,6-dehydratase. Excluded from this model are members of the clade that score poorly because of highly dervied (phylogenetically long-branch) sequences, e.g. Aneurinibacillus thermoaerophilus Gmd, described as a bifunctional GDP-mannose 4,6-dehydratase/GDP-6-deoxy-D-lyxo-4-hexulose reductase (PUBMED:11096116).
Probab=95.10 E-value=0.35 Score=42.91 Aligned_cols=32 Identities=28% Similarity=0.183 Sum_probs=26.3
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
++|+|.| .|.+|+++++.|...|. +++.+|..
T Consensus 1 ~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~ 33 (343)
T TIGR01472 1 KIALITGITGQDGSYLAEFLLEKGY-EVHGLIRR 33 (343)
T ss_pred CeEEEEcCCCcHHHHHHHHHHHCCC-EEEEEecC
Confidence 4788998 58899999999999997 67777643
No 349
>PRK12491 pyrroline-5-carboxylate reductase; Reviewed
Probab=95.09 E-value=0.14 Score=44.55 Aligned_cols=33 Identities=15% Similarity=0.329 Sum_probs=27.2
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcC---ceEEEEeC
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGI---GRLLLYDY 117 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv---~~i~LiD~ 117 (231)
+.+|.+||+|-.|+.++..|...|. .+|.++|.
T Consensus 2 ~~~IgfIG~G~MG~aia~~L~~~g~~~~~~I~v~~r 37 (272)
T PRK12491 2 NKQIGFIGCGNMGIAMIGGMINKNIVSPDQIICSDL 37 (272)
T ss_pred CCeEEEECccHHHHHHHHHHHHCCCCCCceEEEECC
Confidence 4579999999999999999999885 35666654
No 350
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=95.09 E-value=0.12 Score=43.20 Aligned_cols=36 Identities=19% Similarity=0.338 Sum_probs=29.2
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
+.+++++|.| .|++|+.+++.|++.|. +++++|.+.
T Consensus 6 ~~~k~vlItGas~~iG~~la~~l~~~G~-~v~~~~~~~ 42 (252)
T PRK08220 6 FSGKTVWVTGAAQGIGYAVALAFVEAGA-KVIGFDQAF 42 (252)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCC-EEEEEecch
Confidence 5678899998 57899999999999996 667766553
No 351
>PLN02572 UDP-sulfoquinovose synthase
Probab=95.09 E-value=0.37 Score=44.81 Aligned_cols=38 Identities=21% Similarity=0.251 Sum_probs=32.0
Q ss_pred HHHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 80 YERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 80 ~~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
..++++++|+|.| +|.+|+++++.|+..|. +++++|..
T Consensus 42 ~~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~-~V~~~d~~ 80 (442)
T PLN02572 42 SSSSKKKKVMVIGGDGYCGWATALHLSKRGY-EVAIVDNL 80 (442)
T ss_pred CccccCCEEEEECCCcHHHHHHHHHHHHCCC-eEEEEecc
Confidence 4566678899998 69999999999999986 78888843
No 352
>PRK07201 short chain dehydrogenase; Provisional
Probab=95.09 E-value=0.13 Score=49.74 Aligned_cols=89 Identities=16% Similarity=0.242 Sum_probs=60.2
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
.+++++++|.| .||+|.++++.|++.|. ++.+++.+. .+.+.+.+.+.... .++..+.
T Consensus 368 ~~~~k~vlItGas~giG~~la~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~~~~~--~~~~~~~ 426 (657)
T PRK07201 368 PLVGKVVLITGASSGIGRATAIKVAEAGA-TVFLVARNG------------------EALDELVAEIRAKG--GTAHAYT 426 (657)
T ss_pred CCCCCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEECCH------------------HHHHHHHHHHHhcC--CcEEEEE
Confidence 56678899998 58999999999999997 777776432 13444445554433 3455677
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.++.+.+.++.+++.+... +...|++|.+..
T Consensus 427 ~Dv~~~~~~~~~~~~~~~~-------~g~id~li~~Ag 457 (657)
T PRK07201 427 CDLTDSAAVDHTVKDILAE-------HGHVDYLVNNAG 457 (657)
T ss_pred ecCCCHHHHHHHHHHHHHh-------cCCCCEEEECCC
Confidence 7787777777666544322 346888887653
No 353
>cd00650 LDH_MDH_like NAD-dependent, lactate dehydrogenase-like, 2-hydroxycarboxylate dehydrogenase family. Members of this family include ubiquitous enzymes like L-lactate dehydrogenases (LDH), L-2-hydroxyisocaproate dehydrogenases, and some malate dehydrogenases (MDH). LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. The LDH/MDH-like proteins are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains
Probab=95.07 E-value=0.052 Score=46.82 Aligned_cols=32 Identities=38% Similarity=0.611 Sum_probs=28.0
Q ss_pred EEEEec-CchHHHHHHHHHHhc--C-ceEEEEeCCc
Q 026893 88 VAIVGV-GGVGSVAAEMLTRCG--I-GRLLLYDYDK 119 (231)
Q Consensus 88 V~IvG~-GgvGs~ia~~La~~G--v-~~i~LiD~D~ 119 (231)
|+|||+ |.+|+.++..|+..| . .+++|+|.+.
T Consensus 1 I~IIGagG~vG~~ia~~l~~~~~~~~~el~L~D~~~ 36 (263)
T cd00650 1 IAVIGAGGNVGPALAFGLADGSVLLAIELVLYDIDE 36 (263)
T ss_pred CEEECCCChHHHHHHHHHHhCCCCcceEEEEEeCCc
Confidence 589999 999999999999988 4 6999999655
No 354
>CHL00194 ycf39 Ycf39; Provisional
Probab=95.07 E-value=0.14 Score=45.00 Aligned_cols=30 Identities=17% Similarity=0.241 Sum_probs=25.4
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEeC
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
+|+|.| .|-+|+++++.|...|. +++.++.
T Consensus 2 kIlVtGatG~iG~~lv~~Ll~~g~-~V~~l~R 32 (317)
T CHL00194 2 SLLVIGATGTLGRQIVRQALDEGY-QVRCLVR 32 (317)
T ss_pred EEEEECCCcHHHHHHHHHHHHCCC-eEEEEEc
Confidence 799998 69999999999999986 5776654
No 355
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=95.06 E-value=0.12 Score=43.33 Aligned_cols=31 Identities=29% Similarity=0.519 Sum_probs=25.4
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEE
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLL 114 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~L 114 (231)
+++++++|.| .||+|.++++.|+..|.. +.+
T Consensus 3 l~~k~ilItGas~gIG~~la~~l~~~G~~-vv~ 34 (253)
T PRK08642 3 ISEQTVLVTGGSRGLGAAIARAFAREGAR-VVV 34 (253)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCe-EEE
Confidence 4567899997 789999999999999974 444
No 356
>PRK14618 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=95.06 E-value=0.063 Score=47.72 Aligned_cols=32 Identities=25% Similarity=0.460 Sum_probs=28.5
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.+|+|+|+|..|+.++..|++.|. +++++|.+
T Consensus 5 m~I~iIG~G~mG~~ia~~L~~~G~-~V~~~~r~ 36 (328)
T PRK14618 5 MRVAVLGAGAWGTALAVLAASKGV-PVRLWARR 36 (328)
T ss_pred CeEEEECcCHHHHHHHHHHHHCCC-eEEEEeCC
Confidence 479999999999999999999985 68888865
No 357
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=95.05 E-value=0.078 Score=48.75 Aligned_cols=40 Identities=20% Similarity=0.525 Sum_probs=37.3
Q ss_pred HHHhcCcEEEEecCchHHHHHHHHHHhcCc--eEEEEeCCcc
Q 026893 81 ERIREFSVAIVGVGGVGSVAAEMLTRCGIG--RLLLYDYDKV 120 (231)
Q Consensus 81 ~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~--~i~LiD~D~v 120 (231)
++|++.+|++.|+|.-|..+++.|...|+. +|.++|.--+
T Consensus 195 k~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~ 236 (432)
T COG0281 195 KKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGL 236 (432)
T ss_pred CCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCc
Confidence 688999999999999999999999999998 9999997755
No 358
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=95.04 E-value=0.19 Score=42.81 Aligned_cols=90 Identities=13% Similarity=0.221 Sum_probs=53.8
Q ss_pred HhcCcEEEEec---CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEE
Q 026893 83 IREFSVAIVGV---GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESF 159 (231)
Q Consensus 83 l~~~~V~IvG~---GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~ 159 (231)
++++.++|.|+ +|+|.++++.|++.|. ++.+.+.+. +.+ +.+...+.+.+... .+..+
T Consensus 4 l~~k~~lItGas~~~GIG~aia~~la~~G~-~v~~~~~~~--------------~~~--~~~~~~~~~~~~~~--~~~~~ 64 (258)
T PRK07370 4 LTGKKALVTGIANNRSIAWGIAQQLHAAGA-ELGITYLPD--------------EKG--RFEKKVRELTEPLN--PSLFL 64 (258)
T ss_pred cCCcEEEEeCCCCCCchHHHHHHHHHHCCC-EEEEEecCc--------------ccc--hHHHHHHHHHhccC--cceEe
Confidence 56788999997 4999999999999998 455544221 001 11122222222111 23356
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
..++++.+..+.+++.+... +...|++|.|..
T Consensus 65 ~~Dl~d~~~v~~~~~~~~~~-------~g~iD~lv~nag 96 (258)
T PRK07370 65 PCDVQDDAQIEETFETIKQK-------WGKLDILVHCLA 96 (258)
T ss_pred ecCcCCHHHHHHHHHHHHHH-------cCCCCEEEEccc
Confidence 67777777777776654332 246788777653
No 359
>PRK10084 dTDP-glucose 4,6 dehydratase; Provisional
Probab=95.00 E-value=0.38 Score=42.67 Aligned_cols=31 Identities=16% Similarity=0.262 Sum_probs=25.4
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEeC
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
+|+|.| +|.+|+++++.|...|...+..+|.
T Consensus 2 kilITGgtG~iG~~l~~~L~~~g~~~v~~~~~ 33 (352)
T PRK10084 2 KILVTGGAGFIGSAVVRHIINNTQDSVVNVDK 33 (352)
T ss_pred eEEEECCCcHHhHHHHHHHHHhCCCeEEEecC
Confidence 689997 6999999999999998765655553
No 360
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=94.99 E-value=0.031 Score=51.69 Aligned_cols=37 Identities=24% Similarity=0.565 Sum_probs=33.7
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.+.+.+|+|+|+|.+|..++..|...|+.+++++|.+
T Consensus 177 ~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 177 SLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred CccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3678999999999999999999999999999998864
No 361
>PLN02688 pyrroline-5-carboxylate reductase
Probab=94.95 E-value=0.17 Score=43.37 Aligned_cols=29 Identities=24% Similarity=0.420 Sum_probs=24.9
Q ss_pred cEEEEecCchHHHHHHHHHHhcC---ceEEEE
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGI---GRLLLY 115 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv---~~i~Li 115 (231)
+|.+||+|..|+.++..|.+.|. .+++++
T Consensus 2 kI~~IG~G~mG~a~a~~L~~~g~~~~~~i~v~ 33 (266)
T PLN02688 2 RVGFIGAGKMAEAIARGLVASGVVPPSRISTA 33 (266)
T ss_pred eEEEECCcHHHHHHHHHHHHCCCCCcceEEEE
Confidence 69999999999999999999985 256665
No 362
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=94.94 E-value=0.34 Score=44.25 Aligned_cols=110 Identities=21% Similarity=0.319 Sum_probs=62.3
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
+.+|+|+| .|.+|+++++.|...|. ++++++.+.-.... +.. ...+....+.+. .+..++
T Consensus 60 ~~kVLVtGatG~IG~~l~~~Ll~~G~-~V~~l~R~~~~~~~------------~~~----~~~~~~~~~~v~--~v~~Dl 120 (390)
T PLN02657 60 DVTVLVVGATGYIGKFVVRELVRRGY-NVVAVAREKSGIRG------------KNG----KEDTKKELPGAE--VVFGDV 120 (390)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEEechhhccc------------cch----hhHHhhhcCCce--EEEeeC
Confidence 56899998 59999999999999986 67776643211000 000 011111224444 555666
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCC------------HHHHHHHHHHHHHcCCc-EEEeCcc
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDN------------YEARMAVNQACNELNQT-WMESGKQ 223 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~------------~~~r~~i~~~~~~~~~p-~i~~g~~ 223 (231)
++.+.+...+.. ...++|+||.|... ...-..+.+.|++.++. ++..+..
T Consensus 121 ~d~~~l~~~~~~----------~~~~~D~Vi~~aa~~~~~~~~~~~vn~~~~~~ll~aa~~~gv~r~V~iSS~ 183 (390)
T PLN02657 121 TDADSLRKVLFS----------EGDPVDVVVSCLASRTGGVKDSWKIDYQATKNSLDAGREVGAKHFVLLSAI 183 (390)
T ss_pred CCHHHHHHHHHH----------hCCCCcEEEECCccCCCCCccchhhHHHHHHHHHHHHHHcCCCEEEEEeec
Confidence 665555544321 01168999987532 11224566778888764 6655443
No 363
>TIGR03466 HpnA hopanoid-associated sugar epimerase. The sequences in this family are members of the pfam01370 superfamily of NAD-dependent epimerases and dehydratases typically acting on nucleotide-sugar substrates. The genes of the family modeled here are generally in the same locus with genes involved in the biosynthesis and elaboration of hopene, the cyclization product of the polyisoprenoid squalene.
Probab=94.94 E-value=0.16 Score=44.14 Aligned_cols=31 Identities=26% Similarity=0.325 Sum_probs=26.7
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+|+|.| +|.+|+++++.|++.|. +++.+|..
T Consensus 2 ~vlItG~~G~iG~~l~~~L~~~g~-~V~~~~r~ 33 (328)
T TIGR03466 2 KVLVTGATGFVGSAVVRLLLEQGE-EVRVLVRP 33 (328)
T ss_pred eEEEECCccchhHHHHHHHHHCCC-EEEEEEec
Confidence 689998 69999999999999995 78887754
No 364
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.92 E-value=0.15 Score=44.39 Aligned_cols=32 Identities=9% Similarity=0.271 Sum_probs=25.9
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcC---ceEEEEe
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGI---GRLLLYD 116 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv---~~i~LiD 116 (231)
..+|.+||+|..|+.++..|.+.|+ .+++++|
T Consensus 3 ~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v~v~~ 37 (279)
T PRK07679 3 IQNISFLGAGSIAEAIIGGLLHANVVKGEQITVSN 37 (279)
T ss_pred CCEEEEECccHHHHHHHHHHHHCCCCCcceEEEEC
Confidence 4589999999999999999999983 3455544
No 365
>PRK14031 glutamate dehydrogenase; Provisional
Probab=94.91 E-value=0.11 Score=48.54 Aligned_cols=38 Identities=21% Similarity=0.247 Sum_probs=34.2
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
.|++++|+|.|.|-+|++.++.|...|..-+.+-|.+-
T Consensus 225 ~l~g~rVaVQGfGNVG~~aA~~L~e~GAkVVaVSD~~G 262 (444)
T PRK14031 225 DLKGKVCLVSGSGNVAQYTAEKVLELGGKVVTMSDSDG 262 (444)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCC
Confidence 47899999999999999999999999998888888443
No 366
>COG1023 Gnd Predicted 6-phosphogluconate dehydrogenase [Carbohydrate transport and metabolism]
Probab=94.91 E-value=0.3 Score=42.03 Aligned_cols=119 Identities=17% Similarity=0.303 Sum_probs=75.3
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEE-EEeec-cc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLE-SFTLN-IT 164 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~-~~~~~-i~ 164 (231)
++.+||+|-.|..+++.|...|. +++-+|-+.-....+. +-|-.-+..+.+.+.++.+--.|- -.+.. ++
T Consensus 2 ~iGmiGLGrMG~n~v~rl~~~gh-dvV~yD~n~~av~~~~-------~~ga~~a~sl~el~~~L~~pr~vWlMvPag~it 73 (300)
T COG1023 2 QIGMIGLGRMGANLVRRLLDGGH-DVVGYDVNQTAVEELK-------DEGATGAASLDELVAKLSAPRIVWLMVPAGDIT 73 (300)
T ss_pred cceeeccchhhHHHHHHHHhCCC-eEEEEcCCHHHHHHHH-------hcCCccccCHHHHHHhcCCCcEEEEEccCCCch
Confidence 57789999999999999999886 6777775554332221 223333444566666665432222 22222 33
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccC-CHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD-NYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D-~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
++.++.++ ..++.=|+|||... +++.-..-.+...+.++-|+|+|++|-
T Consensus 74 -----~~vi~~la-------~~L~~GDivIDGGNS~y~Ds~rr~~~l~~kgi~flD~GTSGG 123 (300)
T COG1023 74 -----DAVIDDLA-------PLLSAGDIVIDGGNSNYKDSLRRAKLLAEKGIHFLDVGTSGG 123 (300)
T ss_pred -----HHHHHHHH-------hhcCCCCEEEECCccchHHHHHHHHHHHhcCCeEEeccCCCC
Confidence 22222222 25678899999865 445555556678889999999999873
No 367
>PRK06476 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.91 E-value=0.086 Score=45.21 Aligned_cols=30 Identities=10% Similarity=0.284 Sum_probs=24.3
Q ss_pred cEEEEecCchHHHHHHHHHHhcC--ceEEEEe
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGI--GRLLLYD 116 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv--~~i~LiD 116 (231)
+|.|||+|-+|+.++..|.+.|. ..+.+.|
T Consensus 2 ~IgiIG~G~mG~aia~~L~~~g~~~~~i~v~~ 33 (258)
T PRK06476 2 KIGFIGTGAITEAMVTGLLTSPADVSEIIVSP 33 (258)
T ss_pred eEEEECcCHHHHHHHHHHHhCCCChheEEEEC
Confidence 69999999999999999999885 2344444
No 368
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=94.89 E-value=0.093 Score=47.11 Aligned_cols=34 Identities=26% Similarity=0.394 Sum_probs=28.1
Q ss_pred HHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEE
Q 026893 80 YERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLL 114 (231)
Q Consensus 80 ~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~L 114 (231)
-..+++++|.|+|+|++|+++|+.|-..| ..|..
T Consensus 157 g~~~~gK~vgilG~G~IG~~ia~rL~~Fg-~~i~y 190 (336)
T KOG0069|consen 157 GYDLEGKTVGILGLGRIGKAIAKRLKPFG-CVILY 190 (336)
T ss_pred cccccCCEEEEecCcHHHHHHHHhhhhcc-ceeee
Confidence 36788999999999999999999998866 34433
No 369
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=94.84 E-value=0.047 Score=47.21 Aligned_cols=40 Identities=23% Similarity=0.474 Sum_probs=34.4
Q ss_pred HHHhcCcEEEEecCchHHHHHHHHHHh----cC------ceEEEEeCCcc
Q 026893 81 ERIREFSVAIVGVGGVGSVAAEMLTRC----GI------GRLLLYDYDKV 120 (231)
Q Consensus 81 ~kl~~~~V~IvG~GgvGs~ia~~La~~----Gv------~~i~LiD~D~v 120 (231)
++|++.||+++|+|..|.-++++|... |+ ++|.++|.+-+
T Consensus 21 ~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gl 70 (255)
T PF03949_consen 21 KKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGL 70 (255)
T ss_dssp S-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEE
T ss_pred CCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccce
Confidence 469999999999999999999999999 99 89999998754
No 370
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.82 E-value=0.13 Score=48.35 Aligned_cols=36 Identities=28% Similarity=0.394 Sum_probs=31.0
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
+.+++|+|+|+|+.|..+|..|.+.|. +++..|...
T Consensus 5 ~~~~~i~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~~ 40 (498)
T PRK02006 5 LQGPMVLVLGLGESGLAMARWCARHGA-RLRVADTRE 40 (498)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCC-EEEEEcCCC
Confidence 456789999999999999999999997 788888543
No 371
>PRK14030 glutamate dehydrogenase; Provisional
Probab=94.81 E-value=0.21 Score=46.62 Aligned_cols=38 Identities=32% Similarity=0.280 Sum_probs=33.6
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
.+++++|+|-|.|-+|+++|+.|...|.+=+.+-|.+-
T Consensus 225 ~l~g~~vaIQGfGnVG~~aA~~L~e~GakvVavSD~~G 262 (445)
T PRK14030 225 DIKGKTVAISGFGNVAWGAATKATELGAKVVTISGPDG 262 (445)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEEcCCc
Confidence 47889999999999999999999999998888877553
No 372
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=94.81 E-value=0.042 Score=42.49 Aligned_cols=25 Identities=36% Similarity=0.696 Sum_probs=22.2
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcC
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGI 109 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv 109 (231)
..+|.|||+|-+|..++..|.+.|.
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~ 34 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGH 34 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTS
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCC
Confidence 4489999999999999999999996
No 373
>PRK08268 3-hydroxy-acyl-CoA dehydrogenase; Validated
Probab=94.77 E-value=0.11 Score=49.40 Aligned_cols=33 Identities=33% Similarity=0.616 Sum_probs=29.5
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
++|.|||+|..|+.+|..|++.|+ .++++|.+.
T Consensus 8 ~~V~VIGaG~MG~gIA~~la~aG~-~V~l~D~~~ 40 (507)
T PRK08268 8 ATVAVIGAGAMGAGIAQVAAQAGH-TVLLYDARA 40 (507)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999997 788988654
No 374
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=94.76 E-value=0.18 Score=45.54 Aligned_cols=32 Identities=25% Similarity=0.389 Sum_probs=27.5
Q ss_pred cCcEEEEec-CchHHHHHHHHHHhcCceEEEEeC
Q 026893 85 EFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 85 ~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
+++|+|.|. |-+|+++++.|...|. +++.+|.
T Consensus 21 ~~~IlVtGgtGfIG~~l~~~L~~~G~-~V~~v~r 53 (370)
T PLN02695 21 KLRICITGAGGFIASHIARRLKAEGH-YIIASDW 53 (370)
T ss_pred CCEEEEECCccHHHHHHHHHHHhCCC-EEEEEEe
Confidence 578999985 9999999999999885 7787774
No 375
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=94.76 E-value=0.021 Score=45.37 Aligned_cols=108 Identities=18% Similarity=0.294 Sum_probs=53.5
Q ss_pred cEEEEecCchHHHHHHHHHH-hcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 87 SVAIVGVGGVGSVAAEMLTR-CGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~-~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
+|+|+|+|.+|..+++.+.. .++.-+.+.| ..++..+...+-...--|+.+.++-. -+-...+.-....+..
T Consensus 2 kv~I~G~GriGr~v~~~~~~~~~~~lvai~d--~~~~~~~a~ll~~Ds~hg~~~~~v~~-----~~~~l~i~g~~i~~~~ 74 (149)
T smart00846 2 KVGINGFGRIGRLVLRALLERPDIEVVAIND--LTDPETLAHLLKYDSVHGRFPGEVEV-----DEDGLIVNGKKIKVLA 74 (149)
T ss_pred EEEEECcCHHHHHHHHHHHhCCCCEEEEeec--CCCHHHHHHHhcccCCCCCCCCcEEE-----eCCEEEECCEEEEEEe
Confidence 79999999999999998875 3444444444 23444443332122233443322100 0001111111111111
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHH
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNE 212 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~ 212 (231)
..+...+ ||. -.++|+|++|+..+..+.....+...
T Consensus 75 ~~~p~~~----------~w~-~~gvDiVie~tG~f~~~~~~~~hl~~ 110 (149)
T smart00846 75 ERDPANL----------PWK-ELGVDIVVECTGKFTTREKASAHLKA 110 (149)
T ss_pred cCChHHC----------ccc-ccCCeEEEeccccccchHHHHHHHHc
Confidence 0111100 111 13789999999988877766666553
No 376
>PF02571 CbiJ: Precorrin-6x reductase CbiJ/CobK; InterPro: IPR003723 Cobalamin (vitamin B12) is a structurally complex cofactor, consisting of a modified tetrapyrrole with a centrally chelated cobalt. Cobalamin is usually found in one of two biologically active forms: methylcobalamin and adocobalamin. Most prokaryotes, as well as animals, have cobalamin-dependent enzymes, whereas plants and fungi do not appear to use it. In bacteria and archaea, these include methionine synthase, ribonucleotide reductase, glutamate and methylmalonyl-CoA mutases, ethanolamine ammonia lyase, and diol dehydratase []. In mammals, cobalamin is obtained through the diet, and is required for methionine synthase and methylmalonyl-CoA mutase []. There are at least two distinct cobalamin biosynthetic pathways in bacteria []: Aerobic pathway that requires oxygen and in which cobalt is inserted late in the pathway []; found in Pseudomonas denitrificans and Rhodobacter capsulatus. Anaerobic pathway in which cobalt insertion is the first committed step towards cobalamin synthesis []; found in Salmonella typhimurium, Bacillus megaterium, and Propionibacterium freudenreichii subsp. shermanii. Either pathway can be divided into two parts: (1) corrin ring synthesis (differs in aerobic and anaerobic pathways) and (2) adenosylation of corrin ring, attachment of aminopropanol arm, and assembly of the nucleotide loop (common to both pathways) []. There are about 30 enzymes involved in either pathway, where those involved in the aerobic pathway are prefixed Cob and those of the anaerobic pathway Cbi. Several of these enzymes are pathway-specific: CbiD, CbiG, and CbiK are specific to the anaerobic route of S. typhimurium, whereas CobE, CobF, CobG, CobN, CobS, CobT, and CobW are unique to the aerobic pathway of P. denitrificans. This entry represents CobK and CbiJ precorrin-6x reductase (1.3.1.54 from EC). In the aerobic pathway, CobK catalyses the reduction of the macrocycle of precorrin-6X to produce precorrin-6Y; while in the anaerobic pathway CbiJ catalyses the reduction of the macrocycle of cobalt-precorrin-6X into cobalt-precorrin-6Y [, ].; GO: 0016994 precorrin-6A reductase activity, 0009236 cobalamin biosynthetic process, 0055114 oxidation-reduction process
Probab=94.73 E-value=0.3 Score=42.14 Aligned_cols=97 Identities=20% Similarity=0.339 Sum_probs=65.2
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
++|+|+|--+=|-.+++.|...|. +.+ . ++ ++...+.+....+.+. .+.....+
T Consensus 1 m~ILvlgGTtE~r~la~~L~~~g~--v~~-s--v~-------------------t~~g~~~~~~~~~~~~--v~~G~lg~ 54 (249)
T PF02571_consen 1 MKILVLGGTTEGRKLAERLAEAGY--VIV-S--VA-------------------TSYGGELLKPELPGLE--VRVGRLGD 54 (249)
T ss_pred CEEEEEechHHHHHHHHHHHhcCC--EEE-E--EE-------------------hhhhHhhhccccCCce--EEECCCCC
Confidence 479999988889999999999997 322 1 00 0111122222224444 45555534
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHH--HHHHHHHHHcCCcEEEe
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEAR--MAVNQACNELNQTWMES 220 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r--~~i~~~~~~~~~p~i~~ 220 (231)
.+.+..|+.. .+++.|||++.++... ..+.+.|++.|+|++-.
T Consensus 55 ~~~l~~~l~~------------~~i~~vIDATHPfA~~is~na~~a~~~~~ipylR~ 99 (249)
T PF02571_consen 55 EEGLAEFLRE------------NGIDAVIDATHPFAAEISQNAIEACRELGIPYLRF 99 (249)
T ss_pred HHHHHHHHHh------------CCCcEEEECCCchHHHHHHHHHHHHhhcCcceEEE
Confidence 5666666532 5899999999999876 56889999999999743
No 377
>PRK15059 tartronate semialdehyde reductase; Provisional
Probab=94.72 E-value=0.12 Score=45.52 Aligned_cols=120 Identities=14% Similarity=0.207 Sum_probs=70.1
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccCc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTV 166 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~ 166 (231)
+|.+||+|-.|+.++.+|.+.|. +++++|.+. +..+ +. ..|-..+....+... ..++.+.+.+..
T Consensus 2 ~Ig~IGlG~MG~~ma~~L~~~G~-~v~v~~~~~----~~~~-~~---~~g~~~~~s~~~~~~--~advVi~~v~~~---- 66 (292)
T PRK15059 2 KLGFIGLGIMGTPMAINLARAGH-QLHVTTIGP----VADE-LL---SLGAVSVETARQVTE--ASDIIFIMVPDT---- 66 (292)
T ss_pred eEEEEccCHHHHHHHHHHHHCCC-eEEEEeCCH----hHHH-HH---HcCCeecCCHHHHHh--cCCEEEEeCCCh----
Confidence 69999999999999999999996 777888653 1111 11 122222222222222 346665555432
Q ss_pred cchHHHHhhhhccCCCCCCCCCCCcEEEEcc-CCHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 167 QGFETFMSSLRNKSFRPSKEGSGVDLVLSCV-DNYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~-D~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
......+.. ..+.. ....+-.+||+|+ -++..-..+.+.+.+.|..|+++.++|.
T Consensus 67 ~~v~~v~~~--~~g~~--~~~~~g~ivvd~sT~~p~~~~~~~~~~~~~G~~~vdaPVsGg 122 (292)
T PRK15059 67 PQVEEVLFG--ENGCT--KASLKGKTIVDMSSISPIETKRFARQVNELGGDYLDAPVSGG 122 (292)
T ss_pred HHHHHHHcC--Ccchh--ccCCCCCEEEECCCCCHHHHHHHHHHHHHcCCCEEEecCCCC
Confidence 122221100 00000 1123335777765 4666778899999999999999887763
No 378
>TIGR01179 galE UDP-glucose-4-epimerase. This enzyme interconverts UDP-glucose and UDP-galactose. A set of related proteins, some of which are tentatively identified as UDP-glucose-4-epimerase in Thermotoga maritima, Bacillus halodurans, and several archaea, but deeply branched from this set and lacking experimental evidence, are excluded from this model and described separately.
Probab=94.72 E-value=0.47 Score=41.01 Aligned_cols=29 Identities=24% Similarity=0.489 Sum_probs=24.1
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEe
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYD 116 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD 116 (231)
+|+|+| +|.+|+.+++.|.+.|. +++++|
T Consensus 1 kvlV~GatG~iG~~l~~~l~~~g~-~V~~~~ 30 (328)
T TIGR01179 1 KILVTGGAGYIGSHTVRQLLESGH-EVVVLD 30 (328)
T ss_pred CEEEeCCCCHHHHHHHHHHHhCCC-eEEEEe
Confidence 578887 79999999999999986 466665
No 379
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.71 E-value=0.14 Score=47.78 Aligned_cols=39 Identities=23% Similarity=0.373 Sum_probs=33.1
Q ss_pred HHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 80 YERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 80 ~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
-.-+.+++|+|+|.|+.|..+++.|...|. ++++.|...
T Consensus 9 ~~~~~~~~i~v~G~G~sG~a~a~~L~~~G~-~V~~~D~~~ 47 (458)
T PRK01710 9 KKFIKNKKVAVVGIGVSNIPLIKFLVKLGA-KVTAFDKKS 47 (458)
T ss_pred hhhhcCCeEEEEcccHHHHHHHHHHHHCCC-EEEEECCCC
Confidence 345567899999999999999999999997 788888543
No 380
>PRK06182 short chain dehydrogenase; Validated
Probab=94.71 E-value=0.15 Score=43.58 Aligned_cols=81 Identities=14% Similarity=0.238 Sum_probs=49.7
Q ss_pred hcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 84 REFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 84 ~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
++++|+|.| .||+|.++++.|+..|. ++.+++.+.- +.+.+ .. .. ++.+..+
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~~~------------------~l~~~----~~--~~--~~~~~~D 54 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGY-TVYGAARRVD------------------KMEDL----AS--LG--VHPLSLD 54 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHH----Hh--CC--CeEEEee
Confidence 357889998 58999999999999986 5666554321 11111 11 12 3355667
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
+++.+.++..++.+... ..++|+||.+..
T Consensus 55 v~~~~~~~~~~~~~~~~-------~~~id~li~~ag 83 (273)
T PRK06182 55 VTDEASIKAAVDTIIAE-------EGRIDVLVNNAG 83 (273)
T ss_pred CCCHHHHHHHHHHHHHh-------cCCCCEEEECCC
Confidence 77666666655443222 246788887753
No 381
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.70 E-value=0.2 Score=46.55 Aligned_cols=34 Identities=24% Similarity=0.410 Sum_probs=29.4
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCcc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKV 120 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v 120 (231)
.+|+|+|+|+.|..+|..|.+.|. +++++|....
T Consensus 1 ~~v~viG~G~sG~s~a~~l~~~G~-~V~~~D~~~~ 34 (459)
T PRK02705 1 AIAHVIGLGRSGIAAARLLKAQGW-EVVVSDRNDS 34 (459)
T ss_pred CeEEEEccCHHHHHHHHHHHHCCC-EEEEECCCCc
Confidence 379999999999999999999997 7888885543
No 382
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=94.70 E-value=0.18 Score=42.73 Aligned_cols=36 Identities=17% Similarity=0.299 Sum_probs=29.4
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.|.+++++|.| .||+|..+++.|+..|. ++.++|.+
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~-~v~~~~~~ 42 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGA-NVVNADIH 42 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 36678899998 68999999999999997 56666644
No 383
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.70 E-value=0.087 Score=52.07 Aligned_cols=33 Identities=21% Similarity=0.341 Sum_probs=30.0
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
++|+|||+|..|+.||..+++.|. +++|+|.+.
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~ 346 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGV-PVIMKDINQ 346 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCC-eEEEEeCCH
Confidence 579999999999999999999997 999999664
No 384
>PRK11199 tyrA bifunctional chorismate mutase/prephenate dehydrogenase; Provisional
Probab=94.69 E-value=0.69 Score=42.14 Aligned_cols=32 Identities=38% Similarity=0.564 Sum_probs=28.9
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.+|+||| +|.+|+.++..|.+.|. .++++|.+
T Consensus 99 ~~I~IiGG~GlmG~slA~~l~~~G~-~V~~~d~~ 131 (374)
T PRK11199 99 RPVVIVGGKGQLGRLFAKMLTLSGY-QVRILEQD 131 (374)
T ss_pred ceEEEEcCCChhhHHHHHHHHHCCC-eEEEeCCC
Confidence 6899998 99999999999999995 68998865
No 385
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=94.68 E-value=0.17 Score=45.07 Aligned_cols=34 Identities=21% Similarity=0.366 Sum_probs=29.2
Q ss_pred hcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 84 REFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 84 ~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.+.+|+|+|+|++|..++..+...|+ +++.++..
T Consensus 172 ~g~~vlI~G~G~vG~~a~q~ak~~G~-~vi~~~~~ 205 (355)
T cd08230 172 NPRRALVLGAGPIGLLAALLLRLRGF-EVYVLNRR 205 (355)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCC-eEEEEecC
Confidence 57899999999999999988888998 68777753
No 386
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=94.68 E-value=0.39 Score=42.77 Aligned_cols=32 Identities=19% Similarity=0.198 Sum_probs=26.2
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeC
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
+.+|+|.| +|.+|+++++.|...|. ++++++.
T Consensus 10 ~~~vLVtG~~GfIG~~l~~~L~~~G~-~V~~~~r 42 (353)
T PLN02896 10 TGTYCVTGATGYIGSWLVKLLLQRGY-TVHATLR 42 (353)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeC
Confidence 56899998 68999999999999986 5555554
No 387
>PRK06123 short chain dehydrogenase; Provisional
Probab=94.67 E-value=0.24 Score=41.33 Aligned_cols=87 Identities=13% Similarity=0.173 Sum_probs=52.9
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
++.++|.| .|++|+.+++.|++.|.. +.+.+...- .+.+.+.+.+...+ ..+..+..++
T Consensus 2 ~~~~lVtG~~~~iG~~~a~~l~~~G~~-vv~~~~~~~-----------------~~~~~~~~~l~~~~--~~~~~~~~Dl 61 (248)
T PRK06123 2 RKVMIITGASRGIGAATALLAAERGYA-VCLNYLRNR-----------------DAAEAVVQAIRRQG--GEALAVAADV 61 (248)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCe-EEEecCCCH-----------------HHHHHHHHHHHhCC--CcEEEEEecc
Confidence 35688887 589999999999999864 445431110 13333444454433 2344666777
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+..++..+... +...|+||.|..
T Consensus 62 ~~~~~~~~~~~~~~~~-------~~~id~li~~ag 89 (248)
T PRK06123 62 ADEADVLRLFEAVDRE-------LGRLDALVNNAG 89 (248)
T ss_pred CCHHHHHHHHHHHHHH-------hCCCCEEEECCC
Confidence 7766676666554332 246788887653
No 388
>PLN03075 nicotianamine synthase; Provisional
Probab=94.67 E-value=1.8 Score=38.38 Aligned_cols=37 Identities=19% Similarity=0.178 Sum_probs=27.6
Q ss_pred hcCcEEEEecCchHHHHHHHHHHh-cCceEEEEeCCcc
Q 026893 84 REFSVAIVGVGGVGSVAAEMLTRC-GIGRLLLYDYDKV 120 (231)
Q Consensus 84 ~~~~V~IvG~GgvGs~ia~~La~~-Gv~~i~LiD~D~v 120 (231)
..++|+-||||..|-..+-.+++. .-++++=+|.|.-
T Consensus 123 ~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d~~ 160 (296)
T PLN03075 123 VPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDIDPS 160 (296)
T ss_pred CCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCCHH
Confidence 789999999998877666555544 3468888886654
No 389
>cd05296 GH4_P_beta_glucosidase Glycoside Hydrolases Family 4; Phospho-beta-glucosidase. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases such as the phospho-beta-glucosidases. Other organisms (such as archaea and Thermotoga maritima ) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. The 6-phospho-beta-glucosidase from Thermotoga maritima hydrolylzes cellobiose 6-phosphate (6P) into glucose-6P and glucose, in an NAD+ and Mn2+ dependent fashion. The Escherichia coli 6-phospho-beta-glucosidase (also called celF) hydrolyzes a variety of phospho-beta-glucosides including cellobiose-6P, salicin-6P, arbutin-6P, and gentobiose-6P. Phospho-beta-glucosidases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein
Probab=94.65 E-value=0.055 Score=50.12 Aligned_cols=104 Identities=17% Similarity=0.154 Sum_probs=63.7
Q ss_pred cEEEEecCchHH-HHHHHHHH----hcCceEEEEeCCccccccccccCCCcCccCCcHH-HHHHHHHHhhCCCcEEEEEe
Q 026893 87 SVAIVGVGGVGS-VAAEMLTR----CGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKT-DAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 87 ~V~IvG~GgvGs-~ia~~La~----~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka-~~~~~~l~~~np~v~v~~~~ 160 (231)
||+|||.|++-+ .+...|++ .++++|.|+|-|. +..+. .+ ..+++...+..+.++++...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~Did~--~~rl~------------~v~~~~~~~~~~~~~~~~v~~t~ 67 (419)
T cd05296 2 KLTIIGGGSSYTPELIEGLIRRYEELPVTELVLVDIDE--EEKLE------------IVGALAKRMVKKAGLPIKVHLTT 67 (419)
T ss_pred EEEEECCchHhHHHHHHHHHhccccCCCCEEEEecCCh--HHHHH------------HHHHHHHHHHHhhCCCeEEEEeC
Confidence 799999999855 45566665 5679999999885 22221 12 23344455566677765543
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC--CHHHHHHHHHHHHHcCCcEEEeCccCcee
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD--NYEARMAVNQACNELNQTWMESGKQSSSC 227 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D--~~~~r~~i~~~~~~~~~p~i~~g~~g~~g 227 (231)
. .. .-+.+.|+||.+.- ..+.|..-.+...++|+- -.-+.|..|
T Consensus 68 d-------~~--------------~al~gadfVi~~~~vg~~~~r~~de~i~~~~Gi~--gqET~G~GG 113 (419)
T cd05296 68 D-------RR--------------EALEGADFVFTQIRVGGLEARALDERIPLKHGVI--GQETTGAGG 113 (419)
T ss_pred C-------HH--------------HHhCCCCEEEEEEeeCCcchhhhhhhhHHHcCCc--cccCCCcch
Confidence 2 11 13578999999864 334555555666777663 244455444
No 390
>TIGR01850 argC N-acetyl-gamma-glutamyl-phosphate reductase, common form. This model represents the more common of two related families of N-acetyl-gamma-glutamyl-phosphate reductase, an enzyme catalyzing the third step or Arg biosynthesis from Glu. The two families differ by phylogeny, similarity clustering, and the gap architecture in a multiple sequence alignment. Bacterial members of this family tend to be found within Arg biosynthesis operons.
Probab=94.65 E-value=0.12 Score=46.72 Aligned_cols=98 Identities=16% Similarity=0.162 Sum_probs=57.5
Q ss_pred cEEEEec-CchHHHHHHHHHHhcCceEE-EEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 87 SVAIVGV-GGVGSVAAEMLTRCGIGRLL-LYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 87 ~V~IvG~-GgvGs~ia~~La~~Gv~~i~-LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
+|+|+|+ |.+|.++++.|.....-++. +++.+.- .|+. +...+|++.... ...+.
T Consensus 2 kVaIiGATG~vG~ellr~L~~hP~~el~~l~~s~~s--------------agk~--------~~~~~~~l~~~~-~~~~~ 58 (346)
T TIGR01850 2 KVAIVGASGYTGGELLRLLLNHPEVEITYLVSSRES--------------AGKP--------VSEVHPHLRGLV-DLNLE 58 (346)
T ss_pred EEEEECCCCHHHHHHHHHHHcCCCceEEEEeccchh--------------cCCC--------hHHhCccccccC-Cceee
Confidence 7999998 99999999999987655666 5564421 1221 122223222100 00111
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeCcc
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESGKQ 223 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g~~ 223 (231)
. .+.+. ...++|+||.|+.+...+..+.+ +.+.|+.+||.+..
T Consensus 59 ~-~~~~~--------------~~~~~DvVf~alP~~~s~~~~~~-~~~~G~~VIDlS~~ 101 (346)
T TIGR01850 59 P-IDEEE--------------IAEDADVVFLALPHGVSAELAPE-LLAAGVKVIDLSAD 101 (346)
T ss_pred c-CCHHH--------------hhcCCCEEEECCCchHHHHHHHH-HHhCCCEEEeCChh
Confidence 1 01111 12479999999988766555554 45678999987643
No 391
>PRK07060 short chain dehydrogenase; Provisional
Probab=94.64 E-value=0.16 Score=42.21 Aligned_cols=35 Identities=26% Similarity=0.406 Sum_probs=29.8
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+.+++++|.|. |++|..+++.|++.|. ++.+++.+
T Consensus 7 ~~~~~~lItGa~g~iG~~~a~~l~~~g~-~V~~~~r~ 42 (245)
T PRK07060 7 FSGKSVLVTGASSGIGRACAVALAQRGA-RVVAAARN 42 (245)
T ss_pred cCCCEEEEeCCcchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 56779999996 8999999999999997 68887753
No 392
>PRK13018 cell division protein FtsZ; Provisional
Probab=94.62 E-value=0.21 Score=45.64 Aligned_cols=37 Identities=24% Similarity=0.424 Sum_probs=31.9
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCc--eEEEEeCCc
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIG--RLLLYDYDK 119 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~--~i~LiD~D~ 119 (231)
....+|.|||+||-|+.++..|.+.|+. ++..++.|.
T Consensus 26 ~~~~~I~ViGvGGaG~N~v~~m~~~~~~~v~~iaiNTD~ 64 (378)
T PRK13018 26 FGNPKIVVVGCGGAGNNTINRLYEIGIEGAETIAINTDA 64 (378)
T ss_pred cCCCeEEEEEeCCcHHHHHHHHHHcCCCCceEEEEECCH
Confidence 3456899999999999999999999986 667788877
No 393
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.62 E-value=0.14 Score=45.40 Aligned_cols=32 Identities=25% Similarity=0.454 Sum_probs=28.0
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
+|.|+|+|.+|+.++..|++.|. ++++++.+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~-~V~l~~r~~ 33 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKI-SVNLWGRNH 33 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCC-eEEEEecCH
Confidence 69999999999999999999984 678888654
No 394
>PRK08703 short chain dehydrogenase; Provisional
Probab=94.61 E-value=0.36 Score=40.20 Aligned_cols=35 Identities=17% Similarity=0.398 Sum_probs=29.2
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++++|+|.| .||+|.++++.|+..|. ++++++.+
T Consensus 4 l~~k~vlItG~sggiG~~la~~l~~~g~-~V~~~~r~ 39 (239)
T PRK08703 4 LSDKTILVTGASQGLGEQVAKAYAAAGA-TVILVARH 39 (239)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHcCC-EEEEEeCC
Confidence 5668899998 58999999999999997 57777644
No 395
>TIGR01771 L-LDH-NAD L-lactate dehydrogenase. This model represents the NAD-dependent L-lactate dehydrogenases from bacteria and eukaryotes. This enzyme function as as the final step in anaerobic glycolysis. Although lactate dehydrogenases have in some cases been mistaken for malate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of malate dehydrogenases.
Probab=94.61 E-value=0.066 Score=47.36 Aligned_cols=28 Identities=43% Similarity=0.643 Sum_probs=25.5
Q ss_pred EEecCchHHHHHHHHHHhcC-ceEEEEeC
Q 026893 90 IVGVGGVGSVAAEMLTRCGI-GRLLLYDY 117 (231)
Q Consensus 90 IvG~GgvGs~ia~~La~~Gv-~~i~LiD~ 117 (231)
|||+|.+|+.+|..|+..|+ .+|.|+|-
T Consensus 1 iIGaG~VG~~~a~~l~~~~l~~el~L~Di 29 (299)
T TIGR01771 1 IIGAGNVGSSTAFALLNQGIADEIVLIDI 29 (299)
T ss_pred CCCcCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 68999999999999999888 57999984
No 396
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=94.60 E-value=0.093 Score=48.49 Aligned_cols=36 Identities=22% Similarity=0.358 Sum_probs=30.9
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
+++++|+|+|.|++|..+++.|++.|. ++.+.|.+.
T Consensus 3 ~~~k~v~v~G~g~~G~s~a~~l~~~G~-~V~~~d~~~ 38 (447)
T PRK02472 3 YQNKKVLVLGLAKSGYAAAKLLHKLGA-NVTVNDGKP 38 (447)
T ss_pred cCCCEEEEEeeCHHHHHHHHHHHHCCC-EEEEEcCCC
Confidence 457789999999999999999999997 688877543
No 397
>TIGR01500 sepiapter_red sepiapterin reductase. This model describes sepiapterin reductase, a member of the short chain dehydrogenase/reductase family. The enzyme catalyzes the last step in the biosynthesis of tetrahydrobiopterin. A similar enzyme in Bacillus cereus was isolated for its ability to convert benzil to (S)-benzoin, a property sepiapterin reductase also shares. Cutoff scores for this model are set such that benzil reductase scores between trusted and noise cutoffs.
Probab=94.58 E-value=0.38 Score=40.69 Aligned_cols=72 Identities=18% Similarity=0.304 Sum_probs=51.0
Q ss_pred cEEEEe-cCchHHHHHHHHHH----hcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 87 SVAIVG-VGGVGSVAAEMLTR----CGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~----~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
.++|.| .+|+|.++++.|++ .|. ++.+++.+. .+.+.+.+.+....|...+..+..
T Consensus 2 ~vlItGas~GIG~~~a~~la~~~~~~g~-~V~~~~r~~------------------~~~~~~~~~l~~~~~~~~v~~~~~ 62 (256)
T TIGR01500 2 VCLVTGASRGFGRTIAQELAKCLKSPGS-VLVLSARND------------------EALRQLKAEIGAERSGLRVVRVSL 62 (256)
T ss_pred EEEEecCCCchHHHHHHHHHHhhccCCc-EEEEEEcCH------------------HHHHHHHHHHHhcCCCceEEEEEe
Confidence 467776 67999999999997 564 677766432 245556666666556667778888
Q ss_pred cccCccchHHHHhhhh
Q 026893 162 NITTVQGFETFMSSLR 177 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~ 177 (231)
++++.+.++.+++.+.
T Consensus 63 Dl~~~~~v~~~~~~~~ 78 (256)
T TIGR01500 63 DLGAEAGLEQLLKALR 78 (256)
T ss_pred ccCCHHHHHHHHHHHH
Confidence 8888787877776554
No 398
>PRK08655 prephenate dehydrogenase; Provisional
Probab=94.57 E-value=0.24 Score=46.13 Aligned_cols=32 Identities=28% Similarity=0.582 Sum_probs=28.0
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
+|+||| +|++|+.++..|...|. +++++|.+.
T Consensus 2 kI~IIGG~G~mG~slA~~L~~~G~-~V~v~~r~~ 34 (437)
T PRK08655 2 KISIIGGTGGLGKWFARFLKEKGF-EVIVTGRDP 34 (437)
T ss_pred EEEEEecCCHHHHHHHHHHHHCCC-EEEEEECCh
Confidence 689997 89999999999999996 788888653
No 399
>TIGR01757 Malate-DH_plant malate dehydrogenase, NADP-dependent. This model represents the NADP-dependent malate dehydrogenase found in plants, mosses and green algae and localized to the chloroplast. Malate dehydrogenase converts oxaloacetate into malate, a critical step in the C4 cycle which allows circumvention of the effects of photorespiration. Malate is subsequenctly transported from the chloroplast to the cytoplasm (and then to the bundle sheath cells in C4 plants). The plant and moss enzymes are light regulated via cysteine disulfide bonds. The enzyme from Sorghum has been crystallized.
Probab=94.57 E-value=0.1 Score=47.84 Aligned_cols=78 Identities=18% Similarity=0.133 Sum_probs=51.9
Q ss_pred cCcEEEEec-CchHHHHHHHHHHhcCc------eEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhC-CCc-E
Q 026893 85 EFSVAIVGV-GGVGSVAAEMLTRCGIG------RLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADIN-PDV-V 155 (231)
Q Consensus 85 ~~~V~IvG~-GgvGs~ia~~La~~Gv~------~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~n-p~v-~ 155 (231)
-.||.|||+ |.+|+.+|-.|+..|+- .|+|+|.|.- +.|++..+.-|.... |.. .
T Consensus 44 p~KV~IIGAaG~VG~~~A~~l~~~~l~~~~~ei~L~L~diD~~----------------~~~a~g~a~DL~d~a~~~~~~ 107 (387)
T TIGR01757 44 TVNVAVSGAAGMISNHLLFMLASGEVFGQDQPIALKLLGSERS----------------KEALEGVAMELEDSLYPLLRE 107 (387)
T ss_pred CeEEEEECCCcHHHHHHHHHHHhccccCCCCceEEEEeccCcc----------------chhhhHHHHHHHHhhhhhcCc
Confidence 358999999 99999999999999984 4777765443 346666666666654 432 1
Q ss_pred EEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCC
Q 026893 156 LESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDN 199 (231)
Q Consensus 156 v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~ 199 (231)
+.... .+.+ .++++|+||.+...
T Consensus 108 v~i~~------~~y~---------------~~kdaDIVVitAG~ 130 (387)
T TIGR01757 108 VSIGI------DPYE---------------VFEDADWALLIGAK 130 (387)
T ss_pred eEEec------CCHH---------------HhCCCCEEEECCCC
Confidence 11111 2222 35799999987654
No 400
>PRK06484 short chain dehydrogenase; Validated
Probab=94.56 E-value=0.18 Score=47.40 Aligned_cols=84 Identities=13% Similarity=0.296 Sum_probs=53.3
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
++++.++|.| .+|+|..+++.|++.|. ++.+++.+.- +.+.+.+. +. ..+..+..
T Consensus 3 ~~~k~~lITGas~gIG~aia~~l~~~G~-~V~~~~r~~~------------------~~~~~~~~---~~--~~~~~~~~ 58 (520)
T PRK06484 3 AQSRVVLVTGAAGGIGRAACQRFARAGD-QVVVADRNVE------------------RARERADS---LG--PDHHALAM 58 (520)
T ss_pred CCCeEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHHHHHH---hC--CceeEEEe
Confidence 4577888887 67999999999999997 6777765321 22222222 22 23445666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..+++.+... +...|++|.+.
T Consensus 59 D~~~~~~~~~~~~~~~~~-------~g~iD~li~na 87 (520)
T PRK06484 59 DVSDEAQIREGFEQLHRE-------FGRIDVLVNNA 87 (520)
T ss_pred ccCCHHHHHHHHHHHHHH-------hCCCCEEEECC
Confidence 777767776666554332 24678887764
No 401
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.54 E-value=0.15 Score=42.97 Aligned_cols=82 Identities=13% Similarity=0.213 Sum_probs=50.3
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++++|.| .||+|..+++.|+..|. ++.+.+...- .+. +.+... . +..+..
T Consensus 5 l~~k~~lItGas~gIG~~~a~~l~~~G~-~v~~~~~~~~-----------------~~~----~~l~~~--~--~~~~~~ 58 (255)
T PRK06463 5 FKGKVALITGGTRGIGRAIAEAFLREGA-KVAVLYNSAE-----------------NEA----KELREK--G--VFTIKC 58 (255)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEeCCcH-----------------HHH----HHHHhC--C--CeEEEe
Confidence 4578899998 68999999999999997 4555432210 011 112221 1 345666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..++..+... +.+.|+||.|.
T Consensus 59 Dl~~~~~~~~~~~~~~~~-------~~~id~li~~a 87 (255)
T PRK06463 59 DVGNRDQVKKSKEVVEKE-------FGRVDVLVNNA 87 (255)
T ss_pred cCCCHHHHHHHHHHHHHH-------cCCCCEEEECC
Confidence 777766666666544322 24678887765
No 402
>PRK08125 bifunctional UDP-glucuronic acid decarboxylase/UDP-4-amino-4-deoxy-L-arabinose formyltransferase; Validated
Probab=94.54 E-value=0.36 Score=47.20 Aligned_cols=37 Identities=27% Similarity=0.210 Sum_probs=28.7
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.-++++|+|.| +|-+|+++++.|...+--+++.+|..
T Consensus 312 ~~~~~~VLVTGatGFIGs~Lv~~Ll~~~g~~V~~l~r~ 349 (660)
T PRK08125 312 AKRRTRVLILGVNGFIGNHLTERLLRDDNYEVYGLDIG 349 (660)
T ss_pred hhcCCEEEEECCCchHHHHHHHHHHhCCCcEEEEEeCC
Confidence 34577899998 69999999999998642377777753
No 403
>TIGR01214 rmlD dTDP-4-dehydrorhamnose reductase. This enzyme catalyzes the last of 4 steps in making dTDP-rhamnose, a precursor of LPS core antigen, O-antigen, etc.
Probab=94.51 E-value=0.38 Score=41.20 Aligned_cols=30 Identities=20% Similarity=0.289 Sum_probs=25.3
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEeC
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
+|+|+| .|.+|+.+++.|...|. +++.++.
T Consensus 1 kilv~G~tG~iG~~l~~~l~~~g~-~v~~~~r 31 (287)
T TIGR01214 1 RILITGANGQLGRELVQQLSPEGR-VVVALTS 31 (287)
T ss_pred CEEEEcCCCHHHHHHHHHHHhcCC-EEEEeCC
Confidence 588998 59999999999999885 6777765
No 404
>PLN02256 arogenate dehydrogenase
Probab=94.46 E-value=0.061 Score=47.70 Aligned_cols=52 Identities=25% Similarity=0.458 Sum_probs=41.5
Q ss_pred CCchhHHHhhhhcChhHHHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 62 SNPYSRLMALQRMGIVENYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 62 ~~~y~Rq~~l~~~g~~~~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
..+|++.-++.. ..++-+..+|.|||+|.+|..++..|.+.|. +++.+|.+.
T Consensus 18 ~~~~~~~~~~~~-----~~~~~~~~kI~IIG~G~mG~slA~~L~~~G~-~V~~~d~~~ 69 (304)
T PLN02256 18 AQPFDYESRLQE-----ELEKSRKLKIGIVGFGNFGQFLAKTFVKQGH-TVLATSRSD 69 (304)
T ss_pred cCCCChHhHHhH-----hhccCCCCEEEEEeeCHHHHHHHHHHHhCCC-EEEEEECcc
Confidence 468888766643 3455577899999999999999999999885 788888764
No 405
>PRK12439 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=94.46 E-value=0.086 Score=47.33 Aligned_cols=31 Identities=26% Similarity=0.367 Sum_probs=26.2
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.+|+|+|+|..|+.++..|++.| .++++..+
T Consensus 8 mkI~IiGaGa~G~alA~~La~~g--~v~l~~~~ 38 (341)
T PRK12439 8 PKVVVLGGGSWGTTVASICARRG--PTLQWVRS 38 (341)
T ss_pred CeEEEECCCHHHHHHHHHHHHCC--CEEEEeCC
Confidence 57999999999999999999998 46665543
No 406
>PLN02650 dihydroflavonol-4-reductase
Probab=94.43 E-value=0.44 Score=42.36 Aligned_cols=33 Identities=24% Similarity=0.208 Sum_probs=26.7
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++|+|.| +|.+|+++++.|+..|. ++++++.+
T Consensus 5 ~k~iLVTGatGfIGs~l~~~L~~~G~-~V~~~~r~ 38 (351)
T PLN02650 5 KETVCVTGASGFIGSWLVMRLLERGY-TVRATVRD 38 (351)
T ss_pred CCEEEEeCCcHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 46899998 69999999999999987 56655543
No 407
>KOG1200 consensus Mitochondrial/plastidial beta-ketoacyl-ACP reductase [Lipid transport and metabolism]
Probab=94.43 E-value=0.19 Score=42.01 Aligned_cols=43 Identities=28% Similarity=0.485 Sum_probs=35.7
Q ss_pred HHHHHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccc
Q 026893 78 ENYERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVE 121 (231)
Q Consensus 78 ~~~~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~ 121 (231)
+.+++++++.++|.| ..|+|-.|+..|++.|. ++...|-|.-.
T Consensus 7 ~~~~r~~sk~~~vtGg~sGIGrAia~~la~~Ga-rv~v~dl~~~~ 50 (256)
T KOG1200|consen 7 EVVQRLMSKVAAVTGGSSGIGRAIAQLLAKKGA-RVAVADLDSAA 50 (256)
T ss_pred HHHHHHhcceeEEecCCchHHHHHHHHHHhcCc-EEEEeecchhh
Confidence 668899999999887 45999999999999997 66777766654
No 408
>PLN02214 cinnamoyl-CoA reductase
Probab=94.42 E-value=0.44 Score=42.51 Aligned_cols=106 Identities=14% Similarity=0.076 Sum_probs=61.4
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+++++|+|.|+ |.+|+++++.|...|. +++.++.+.- +. +...+ ..+....+ .++.+..
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~-~V~~~~r~~~---~~-------------~~~~~-~~~~~~~~--~~~~~~~ 67 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGY-TVKGTVRNPD---DP-------------KNTHL-RELEGGKE--RLILCKA 67 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcC-EEEEEeCCch---hh-------------hHHHH-HHhhCCCC--cEEEEec
Confidence 45678999986 9999999999999986 5655543211 00 11111 11111111 2445556
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCC------------HHHHHHHHHHHHHcCC-cEEEeCc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDN------------YEARMAVNQACNELNQ-TWMESGK 222 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~------------~~~r~~i~~~~~~~~~-p~i~~g~ 222 (231)
++.+...+... +.++|+||.|... ...-..+.++|++.++ .++..+.
T Consensus 68 Dl~d~~~~~~~--------------~~~~d~Vih~A~~~~~~~~~~~~~nv~gt~~ll~aa~~~~v~r~V~~SS 127 (342)
T PLN02214 68 DLQDYEALKAA--------------IDGCDGVFHTASPVTDDPEQMVEPAVNGAKFVINAAAEAKVKRVVITSS 127 (342)
T ss_pred CcCChHHHHHH--------------HhcCCEEEEecCCCCCCHHHHHHHHHHHHHHHHHHHHhcCCCEEEEecc
Confidence 66654444432 3568888887532 1122456778888886 4666554
No 409
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=94.39 E-value=0.12 Score=51.15 Aligned_cols=33 Identities=21% Similarity=0.345 Sum_probs=29.2
Q ss_pred CcEEEEecCchHHHHHHHHH-HhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLT-RCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La-~~Gv~~i~LiD~D~ 119 (231)
++|+|||+|..|+.+|..++ +.|+ .++|+|.+.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~-~V~l~d~~~ 343 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGL-PVRIKDINP 343 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCC-eEEEEeCCH
Confidence 67999999999999999999 7786 889999654
No 410
>PRK12824 acetoacetyl-CoA reductase; Provisional
Probab=94.39 E-value=0.44 Score=39.51 Aligned_cols=85 Identities=14% Similarity=0.192 Sum_probs=52.7
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
++|+|.| .|++|.++++.|++.|. ++.+.|.+.- .++..+...+.. +..++..+..++.
T Consensus 3 k~vlItG~s~~iG~~la~~l~~~g~-~vi~~~r~~~-----------------~~~~~~~~~~~~--~~~~~~~~~~D~~ 62 (245)
T PRK12824 3 KIALVTGAKRGIGSAIARELLNDGY-RVIATYFSGN-----------------DCAKDWFEEYGF--TEDQVRLKELDVT 62 (245)
T ss_pred CEEEEeCCCchHHHHHHHHHHHcCC-EEEEEeCCcH-----------------HHHHHHHHHhhc--cCCeEEEEEcCCC
Confidence 4678886 88999999999999995 6777665531 012222222222 2334566777777
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+.+.+...++.+... +.++|+||.+.
T Consensus 63 ~~~~v~~~~~~~~~~-------~~~id~vi~~a 88 (245)
T PRK12824 63 DTEECAEALAEIEEE-------EGPVDILVNNA 88 (245)
T ss_pred CHHHHHHHHHHHHHH-------cCCCCEEEECC
Confidence 766666655543321 34678888765
No 411
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=94.37 E-value=0.33 Score=42.08 Aligned_cols=23 Identities=30% Similarity=0.621 Sum_probs=20.6
Q ss_pred CcEEEEecCchHHHHHHHHHHhc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCG 108 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~G 108 (231)
.||+|+|||.+|..+++.|...+
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~ 24 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDP 24 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCC
Confidence 48999999999999999998763
No 412
>TIGR01373 soxB sarcosine oxidase, beta subunit family, heterotetrameric form. Sarcosine oxidase catalyzes the oxidative demethylation of sarcosine to glycine. The reaction converts tetrahydrofolate to 5,10-methylene-tetrahydrofolate. The enzyme is known in monomeric and heterotetrameric (alpha,beta,gamma,delta) forms.
Probab=94.36 E-value=0.073 Score=48.42 Aligned_cols=43 Identities=30% Similarity=0.418 Sum_probs=35.4
Q ss_pred cCcEEEEecCchHHHHHHHHHHh-cCceEEEEeCCccccccccc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRC-GIGRLLLYDYDKVELANMNR 127 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~-Gv~~i~LiD~D~v~~~Nl~R 127 (231)
...|+|||.|-+|+.+|..|++. |..+++|+|.+.+-.....|
T Consensus 30 ~~dvvIIGgGi~G~s~A~~L~~~~g~~~V~vle~~~~~~gas~~ 73 (407)
T TIGR01373 30 TYDVIIVGGGGHGLATAYYLAKEHGITNVAVLEKGWLGGGNTGR 73 (407)
T ss_pred cCCEEEECCcHHHHHHHHHHHHhcCCCeEEEEEcccccCccccc
Confidence 45799999999999999999995 87799999998765443333
No 413
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=94.36 E-value=0.18 Score=43.98 Aligned_cols=33 Identities=21% Similarity=0.209 Sum_probs=27.2
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++|+|.| +|.+|+++++.|...|. +++.++.+
T Consensus 4 ~~~ilVtGatGfIG~~l~~~L~~~g~-~V~~~~r~ 37 (322)
T PLN02662 4 GKVVCVTGASGYIASWLVKLLLQRGY-TVKATVRD 37 (322)
T ss_pred CCEEEEECChHHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 56899998 79999999999999987 56665544
No 414
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.35 E-value=0.52 Score=42.08 Aligned_cols=33 Identities=33% Similarity=0.519 Sum_probs=28.7
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeC
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 177 g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~ 209 (358)
T TIGR03451 177 GDSVAVIGCGGVGDAAIAGAALAGASKIIAVDI 209 (358)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 678999999999999998888899887887764
No 415
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=94.35 E-value=0.063 Score=48.05 Aligned_cols=38 Identities=26% Similarity=0.417 Sum_probs=33.4
Q ss_pred HHHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeC
Q 026893 79 NYERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 79 ~~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
..+.|++++|.|||+|.+|..+|.+|..+|+ ++++.|.
T Consensus 10 ~~~~LkgKtVGIIG~GsIG~amA~nL~d~G~-~ViV~~r 47 (335)
T PRK13403 10 NVELLQGKTVAVIGYGSQGHAQAQNLRDSGV-EVVVGVR 47 (335)
T ss_pred ChhhhCcCEEEEEeEcHHHHHHHHHHHHCcC-EEEEEEC
Confidence 3578999999999999999999999999998 6667663
No 416
>PRK06997 enoyl-(acyl carrier protein) reductase; Provisional
Probab=94.33 E-value=0.22 Score=42.47 Aligned_cols=87 Identities=14% Similarity=0.181 Sum_probs=53.1
Q ss_pred HHhcCcEEEEec---CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEE
Q 026893 82 RIREFSVAIVGV---GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLES 158 (231)
Q Consensus 82 kl~~~~V~IvG~---GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~ 158 (231)
++.+++++|.|. +|+|..+++.|++.|. ++.+++... | ...+.+.+.+ +. +.. ..
T Consensus 3 ~l~~k~vlItGas~~~GIG~a~a~~l~~~G~-~v~~~~~~~-------~--------~~~~~~~~~~---~~-~~~--~~ 60 (260)
T PRK06997 3 FLAGKRILITGLLSNRSIAYGIAKACKREGA-ELAFTYVGD-------R--------FKDRITEFAA---EF-GSD--LV 60 (260)
T ss_pred ccCCcEEEEeCCCCCCcHHHHHHHHHHHCCC-eEEEEccch-------H--------HHHHHHHHHH---hc-CCc--ce
Confidence 466789999994 6999999999999997 455554210 0 0112222222 12 222 24
Q ss_pred EeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 159 FTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 159 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+..++++.+..+.+++.+... +...|++|.+.
T Consensus 61 ~~~Dv~d~~~v~~~~~~~~~~-------~g~iD~lvnnA 92 (260)
T PRK06997 61 FPCDVASDEQIDALFASLGQH-------WDGLDGLVHSI 92 (260)
T ss_pred eeccCCCHHHHHHHHHHHHHH-------hCCCcEEEEcc
Confidence 566777777777777655432 25678877764
No 417
>PRK05993 short chain dehydrogenase; Provisional
Probab=94.32 E-value=0.23 Score=42.72 Aligned_cols=33 Identities=27% Similarity=0.388 Sum_probs=27.3
Q ss_pred cCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCC
Q 026893 85 EFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 85 ~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++|+|.|+ ||+|.++++.|+..|. ++.+++.+
T Consensus 4 ~k~vlItGasggiG~~la~~l~~~G~-~Vi~~~r~ 37 (277)
T PRK05993 4 KRSILITGCSSGIGAYCARALQSDGW-RVFATCRK 37 (277)
T ss_pred CCEEEEeCCCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 457899986 9999999999999997 57776654
No 418
>TIGR01692 HIBADH 3-hydroxyisobutyrate dehydrogenase. This enzyme belongs to the 3-hydroxyacid dehydrogenase family, sharing a common evolutionary origin and enzymatic mechanism with 6-phosphogluconate. HIBADH exhibits sequence similarity to the NAD binding domain of 6-phosphogluconate dehydrogenase above trusted (pfam03446).
Probab=94.30 E-value=0.12 Score=45.08 Aligned_cols=115 Identities=12% Similarity=0.237 Sum_probs=66.9
Q ss_pred EEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccCccch
Q 026893 90 IVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTVQGF 169 (231)
Q Consensus 90 IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~~~~ 169 (231)
+||+|-.|+.++.+|++.|. +++++|.+.-....+.. .|...+....+.+. +.++.+.+.+.. ..+
T Consensus 1 ~IGlG~mG~~mA~~L~~~G~-~V~v~dr~~~~~~~l~~-------~g~~~~~s~~~~~~--~advVil~vp~~----~~~ 66 (288)
T TIGR01692 1 FIGLGNMGGPMAANLLKAGH-PVRVFDLFPDAVEEAVA-------AGAQAAASPAEAAE--GADRVITMLPAG----QHV 66 (288)
T ss_pred CCcccHhHHHHHHHHHhCCC-eEEEEeCCHHHHHHHHH-------cCCeecCCHHHHHh--cCCEEEEeCCCh----HHH
Confidence 58999999999999999996 78898876432221111 12222222223232 246665555431 222
Q ss_pred HHHH---hhhhccCCCCCCCCCCCcEEEEccC-CHHHHHHHHHHHHHcCCcEEEeCccCc
Q 026893 170 ETFM---SSLRNKSFRPSKEGSGVDLVLSCVD-NYEARMAVNQACNELNQTWMESGKQSS 225 (231)
Q Consensus 170 ~~~~---~~~~~~~~~~~~~~~~~DiVi~~~D-~~~~r~~i~~~~~~~~~p~i~~g~~g~ 225 (231)
...+ +.+. ..+.+-.+||+++. +.+.-..+.+.+.+.|+.|+++-++|.
T Consensus 67 ~~v~~g~~~l~-------~~~~~g~~vid~st~~p~~~~~~~~~~~~~g~~~vdaPv~Gg 119 (288)
T TIGR01692 67 ISVYSGDEGIL-------PKVAKGSLLIDCSTIDPDSARKLAELAAAHGAVFMDAPVSGG 119 (288)
T ss_pred HHHHcCcchHh-------hcCCCCCEEEECCCCCHHHHHHHHHHHHHcCCcEEECCCCCC
Confidence 2222 1111 12233456676653 455667889999999999999877653
No 419
>COG0665 DadA Glycine/D-amino acid oxidases (deaminating) [Amino acid transport and metabolism]
Probab=94.29 E-value=0.067 Score=47.90 Aligned_cols=44 Identities=25% Similarity=0.269 Sum_probs=38.4
Q ss_pred hcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCcccccccccc
Q 026893 84 REFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRL 128 (231)
Q Consensus 84 ~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~ 128 (231)
...+|+|||.|-+|..+|..|++.|. +++++|.+.+...+..|.
T Consensus 3 ~~~~vvVIGgGi~Gls~A~~La~~G~-~V~vie~~~~~~g~s~~~ 46 (387)
T COG0665 3 MKMDVVIIGGGIVGLSAAYYLAERGA-DVTVLEAGEAGGGAAGRN 46 (387)
T ss_pred CcceEEEECCcHHHHHHHHHHHHcCC-EEEEEecCccCCcchhcc
Confidence 35789999999999999999999999 999999998876665553
No 420
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=94.28 E-value=0.06 Score=47.33 Aligned_cols=36 Identities=22% Similarity=0.373 Sum_probs=32.6
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.|.+++|+|+|+|++|..+++.|...|. +++++|.+
T Consensus 148 ~l~gk~v~IiG~G~iG~avA~~L~~~G~-~V~v~~R~ 183 (287)
T TIGR02853 148 TIHGSNVMVLGFGRTGMTIARTFSALGA-RVFVGARS 183 (287)
T ss_pred CCCCCEEEEEcChHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 5678999999999999999999999997 89998864
No 421
>PRK06179 short chain dehydrogenase; Provisional
Probab=94.26 E-value=0.2 Score=42.55 Aligned_cols=33 Identities=27% Similarity=0.446 Sum_probs=27.1
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++|+|.| .||+|..+++.|++.|. ++++++.+
T Consensus 4 ~~~vlVtGasg~iG~~~a~~l~~~g~-~V~~~~r~ 37 (270)
T PRK06179 4 SKVALVTGASSGIGRATAEKLARAGY-RVFGTSRN 37 (270)
T ss_pred CCEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCC
Confidence 45788887 68999999999999996 47777755
No 422
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=94.25 E-value=0.46 Score=41.84 Aligned_cols=34 Identities=26% Similarity=0.264 Sum_probs=29.3
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+.+|+|.|+|++|..++..+...|+.++..+|.+
T Consensus 164 g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~ 197 (339)
T cd08239 164 RDTVLVVGAGPVGLGALMLARALGAEDVIGVDPS 197 (339)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 6799999999999999999889999877777643
No 423
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.22 E-value=0.4 Score=40.06 Aligned_cols=89 Identities=13% Similarity=0.203 Sum_probs=51.7
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.+++|+|.| .|++|+.+++.|+..|.. +.+.... ...+.......+.... .++..+..
T Consensus 4 ~~~~~vlitGasg~iG~~l~~~l~~~g~~-v~~~~~~-----------------~~~~~~~~~~~~~~~~--~~~~~~~~ 63 (252)
T PRK06077 4 LKDKVVVVTGSGRGIGRAIAVRLAKEGSL-VVVNAKK-----------------RAEEMNETLKMVKENG--GEGIGVLA 63 (252)
T ss_pred CCCcEEEEeCCCChHHHHHHHHHHHCCCE-EEEEeCC-----------------ChHHHHHHHHHHHHcC--CeeEEEEe
Confidence 3467899998 667999999999999984 4332111 0012222223333332 23445666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++++.+.++..++.+... +...|+||.+..
T Consensus 64 D~~~~~~~~~~~~~~~~~-------~~~~d~vi~~ag 93 (252)
T PRK06077 64 DVSTREGCETLAKATIDR-------YGVADILVNNAG 93 (252)
T ss_pred ccCCHHHHHHHHHHHHHH-------cCCCCEEEECCC
Confidence 777666666555443321 346788887763
No 424
>PRK05884 short chain dehydrogenase; Provisional
Probab=94.22 E-value=0.2 Score=41.75 Aligned_cols=31 Identities=23% Similarity=0.267 Sum_probs=26.2
Q ss_pred cEEEEec-CchHHHHHHHHHHhcCceEEEEeCC
Q 026893 87 SVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 87 ~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++|.|+ ||+|..+++.|++.|. ++.+++.+
T Consensus 2 ~vlItGas~giG~~ia~~l~~~g~-~v~~~~r~ 33 (223)
T PRK05884 2 EVLVTGGDTDLGRTIAEGFRNDGH-KVTLVGAR 33 (223)
T ss_pred eEEEEeCCchHHHHHHHHHHHCCC-EEEEEeCC
Confidence 6888985 8999999999999997 67777654
No 425
>PRK06392 homoserine dehydrogenase; Provisional
Probab=94.21 E-value=0.36 Score=43.29 Aligned_cols=20 Identities=25% Similarity=0.612 Sum_probs=18.9
Q ss_pred cEEEEecCchHHHHHHHHHH
Q 026893 87 SVAIVGVGGVGSVAAEMLTR 106 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~ 106 (231)
+|+|+|+|.+|+.+++.|..
T Consensus 2 rVaIiGfG~VG~~va~~L~~ 21 (326)
T PRK06392 2 RISIIGLGNVGLNVLRIIKS 21 (326)
T ss_pred EEEEECCCHHHHHHHHHHHh
Confidence 79999999999999999977
No 426
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.19 E-value=0.17 Score=46.77 Aligned_cols=86 Identities=20% Similarity=0.315 Sum_probs=52.0
Q ss_pred HHhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 82 RIREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 82 kl~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
.+.+++++|.|+ ||+|..+++.|++.|.. +.++|... ..+.+.+...++. ...+.
T Consensus 207 ~~~g~~vlItGasggIG~~la~~l~~~Ga~-vi~~~~~~-------------------~~~~l~~~~~~~~----~~~~~ 262 (450)
T PRK08261 207 PLAGKVALVTGAARGIGAAIAEVLARDGAH-VVCLDVPA-------------------AGEALAAVANRVG----GTALA 262 (450)
T ss_pred CCCCCEEEEecCCCHHHHHHHHHHHHCCCE-EEEEeCCc-------------------cHHHHHHHHHHcC----CeEEE
Confidence 456788999986 99999999999999974 55655311 0111122222221 12455
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
.++++.+..+.+++.+... ....|+||.+..
T Consensus 263 ~Dv~~~~~~~~~~~~~~~~-------~g~id~vi~~AG 293 (450)
T PRK08261 263 LDITAPDAPARIAEHLAER-------HGGLDIVVHNAG 293 (450)
T ss_pred EeCCCHHHHHHHHHHHHHh-------CCCCCEEEECCC
Confidence 5666666666665543322 246788888754
No 427
>PRK12742 oxidoreductase; Provisional
Probab=94.19 E-value=0.12 Score=42.95 Aligned_cols=32 Identities=16% Similarity=0.298 Sum_probs=26.5
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEE
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLY 115 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~Li 115 (231)
+.+++|+|.| .||+|.++++.|+..|.. +.+.
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~-v~~~ 36 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGAN-VRFT 36 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCE-EEEe
Confidence 5678899998 589999999999999974 5443
No 428
>PRK14982 acyl-ACP reductase; Provisional
Probab=94.18 E-value=0.061 Score=48.46 Aligned_cols=38 Identities=32% Similarity=0.572 Sum_probs=33.2
Q ss_pred HHhcCcEEEEec-CchHHHHHHHHHH-hcCceEEEEeCCc
Q 026893 82 RIREFSVAIVGV-GGVGSVAAEMLTR-CGIGRLLLYDYDK 119 (231)
Q Consensus 82 kl~~~~V~IvG~-GgvGs~ia~~La~-~Gv~~i~LiD~D~ 119 (231)
.|++++|+|+|+ |.+|+.+++.|+. .|+.++++++.+.
T Consensus 152 ~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~lilv~R~~ 191 (340)
T PRK14982 152 DLSKATVAVVGATGDIGSAVCRWLDAKTGVAELLLVARQQ 191 (340)
T ss_pred CcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEEEEcCCH
Confidence 577899999998 8999999999985 5899999988653
No 429
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=94.17 E-value=0.36 Score=42.28 Aligned_cols=33 Identities=21% Similarity=0.167 Sum_probs=26.4
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++|+|.| +|++|+++++.|...|. ++++++.|
T Consensus 5 ~k~vlVtG~~G~IG~~l~~~L~~~G~-~V~~~~r~ 38 (325)
T PLN02989 5 GKVVCVTGASGYIASWIVKLLLFRGY-TINATVRD 38 (325)
T ss_pred CCEEEEECCchHHHHHHHHHHHHCCC-EEEEEEcC
Confidence 46899998 69999999999999987 45555443
No 430
>TIGR01829 AcAcCoA_reduct acetoacetyl-CoA reductase. (R)-3-hydroxyacyl-CoA + NADP+ = 3-oxoacyl-CoA + NADPH. Members of this family may act in the biosynthesis of poly-beta-hydroxybutyrate (e.g. Rhizobium meliloti) and related poly-beta-hydroxyalkanoates. Note that the member of this family from Azospirillum brasilense, designated NodG, appears to lack acetoacetyl-CoA reductase activity and to act instead in the production of nodulation factor. This family is downgraded to subfamily for this NodG. Other proteins designated NodG, as from Rhizobium, belong to related but distinct protein families.
Probab=94.16 E-value=0.44 Score=39.42 Aligned_cols=86 Identities=13% Similarity=0.245 Sum_probs=51.9
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
+.++|.| .|++|.++++.|+..|. +++++... + ..+.+.+.+.+... ...+..+..+++
T Consensus 1 k~~lItG~sg~iG~~la~~l~~~G~-~v~~~~r~-----~------------~~~~~~~~~~~~~~--~~~~~~~~~D~~ 60 (242)
T TIGR01829 1 RIALVTGGMGGIGTAICQRLAKDGY-RVAANCGP-----N------------EERAEAWLQEQGAL--GFDFRVVEGDVS 60 (242)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCC-EEEEEeCC-----C------------HHHHHHHHHHHHhh--CCceEEEEecCC
Confidence 3577887 79999999999999997 44444321 0 01222222223222 334556777777
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
+...+..+++.+... ....|.||.|..
T Consensus 61 ~~~~~~~~~~~~~~~-------~~~id~vi~~ag 87 (242)
T TIGR01829 61 SFESCKAAVAKVEAE-------LGPIDVLVNNAG 87 (242)
T ss_pred CHHHHHHHHHHHHHH-------cCCCcEEEECCC
Confidence 766666666554332 246788888763
No 431
>COG4221 Short-chain alcohol dehydrogenase of unknown specificity [General function prediction only]
Probab=94.15 E-value=0.28 Score=42.10 Aligned_cols=85 Identities=18% Similarity=0.330 Sum_probs=59.3
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
+.++-++|-| .+|+|-.+|+.|+..|. ++.|..... .|-+.++..+.+ ..+.+...
T Consensus 4 ~~~kv~lITGASSGiG~A~A~~l~~~G~-~vvl~aRR~------------------drL~~la~~~~~----~~~~~~~~ 60 (246)
T COG4221 4 LKGKVALITGASSGIGEATARALAEAGA-KVVLAARRE------------------ERLEALADEIGA----GAALALAL 60 (246)
T ss_pred CCCcEEEEecCcchHHHHHHHHHHHCCC-eEEEEeccH------------------HHHHHHHHhhcc----CceEEEee
Confidence 3456677888 56999999999999998 666644211 245555555544 56678888
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+..+.+++.+. ..+.+.|++|+.-
T Consensus 61 DVtD~~~~~~~i~~~~-------~~~g~iDiLvNNA 89 (246)
T COG4221 61 DVTDRAAVEAAIEALP-------EEFGRIDILVNNA 89 (246)
T ss_pred ccCCHHHHHHHHHHHH-------HhhCcccEEEecC
Confidence 8998878777766543 2467899998653
No 432
>PRK09330 cell division protein FtsZ; Validated
Probab=94.15 E-value=0.33 Score=44.47 Aligned_cols=36 Identities=25% Similarity=0.448 Sum_probs=30.4
Q ss_pred hcCcEEEEecCchHHHHHHHHHHhcCc--eEEEEeCCc
Q 026893 84 REFSVAIVGVGGVGSVAAEMLTRCGIG--RLLLYDYDK 119 (231)
Q Consensus 84 ~~~~V~IvG~GgvGs~ia~~La~~Gv~--~i~LiD~D~ 119 (231)
...+|.|||+||-|+.++..|.+.|+. ++..++-|.
T Consensus 12 ~~~~IkViGvGG~G~Nav~~m~~~~~~~v~fia~NTD~ 49 (384)
T PRK09330 12 QGAVIKVIGVGGGGGNAVNRMIEEGIQGVEFIAANTDA 49 (384)
T ss_pred cCCeEEEEEECCcHHHHHHHHHHcCCCCceEEEEeCcH
Confidence 356899999999999999999999876 666667766
No 433
>PRK06928 pyrroline-5-carboxylate reductase; Reviewed
Probab=94.15 E-value=0.27 Score=42.84 Aligned_cols=33 Identities=18% Similarity=0.422 Sum_probs=27.3
Q ss_pred CcEEEEecCchHHHHHHHHHHhcC---ceEEEEeCC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGI---GRLLLYDYD 118 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv---~~i~LiD~D 118 (231)
.+|.|||+|.+|+.++..|.+.|. .++.+++.+
T Consensus 2 ~~I~iIG~G~mG~ala~~L~~~g~~~~~~V~~~~r~ 37 (277)
T PRK06928 2 EKIGFIGYGSMADMIATKLLETEVATPEEIILYSSS 37 (277)
T ss_pred CEEEEECccHHHHHHHHHHHHCCCCCcccEEEEeCC
Confidence 369999999999999999999883 467777653
No 434
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=94.12 E-value=0.059 Score=47.20 Aligned_cols=77 Identities=14% Similarity=0.342 Sum_probs=51.4
Q ss_pred HHHhcCcEEEEecCchHHHHHHHHHHh----cC------ceEEEEeCCcccccc---ccc-c-CC-CcCccCCcHHHHHH
Q 026893 81 ERIREFSVAIVGVGGVGSVAAEMLTRC----GI------GRLLLYDYDKVELAN---MNR-L-FF-RPEQVGMTKTDAAV 144 (231)
Q Consensus 81 ~kl~~~~V~IvG~GgvGs~ia~~La~~----Gv------~~i~LiD~D~v~~~N---l~R-~-~~-~~~dvG~~Ka~~~~ 144 (231)
++|++.+|+++|+|+.|..++++|... |+ ++|.++|.+-+-..+ ++. + .| ...+-+ ...-+.
T Consensus 21 ~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~~~~a~~~~~~--~~~~L~ 98 (279)
T cd05312 21 KPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFKKPFARKDEEK--EGKSLL 98 (279)
T ss_pred CChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHHHHHHhhcCcc--cCCCHH
Confidence 578899999999999999999999988 98 799999987553332 222 1 12 111101 112456
Q ss_pred HHHHhhCCCcEEEEE
Q 026893 145 QTLADINPDVVLESF 159 (231)
Q Consensus 145 ~~l~~~np~v~v~~~ 159 (231)
+.++...|++-|-.-
T Consensus 99 e~i~~v~ptvlIG~S 113 (279)
T cd05312 99 EVVKAVKPTVLIGLS 113 (279)
T ss_pred HHHHhcCCCEEEEeC
Confidence 666666777766544
No 435
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=94.10 E-value=0.2 Score=46.07 Aligned_cols=40 Identities=28% Similarity=0.473 Sum_probs=33.1
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNR 127 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R 127 (231)
+|.|||+|-+|..++..|+..|. +++.+|.+.-....+++
T Consensus 2 kI~vIGlG~~G~~lA~~La~~G~-~V~~~d~~~~~v~~l~~ 41 (411)
T TIGR03026 2 KIAVIGLGYVGLPLAALLADLGH-EVTGVDIDQEKVDKLNK 41 (411)
T ss_pred EEEEECCCchhHHHHHHHHhcCC-eEEEEECCHHHHHHhhc
Confidence 69999999999999999999997 68999987654444443
No 436
>COG1712 Predicted dinucleotide-utilizing enzyme [General function prediction only]
Probab=94.10 E-value=0.26 Score=41.93 Aligned_cols=37 Identities=27% Similarity=0.479 Sum_probs=25.9
Q ss_pred cEEEEecCchHHHHHHHHHHh--cCceEEEEeCCccccc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRC--GIGRLLLYDYDKVELA 123 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~--Gv~~i~LiD~D~v~~~ 123 (231)
+|.|||||++|..+++.+-.- ++.-+.++|.+.=...
T Consensus 2 ~vgiVGcGaIG~~l~e~v~~~~~~~e~v~v~D~~~ek~~ 40 (255)
T COG1712 2 KVGIVGCGAIGKFLLELVRDGRVDFELVAVYDRDEEKAK 40 (255)
T ss_pred eEEEEeccHHHHHHHHHHhcCCcceeEEEEecCCHHHHH
Confidence 689999999999999877432 2555666665554333
No 437
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=94.08 E-value=0.1 Score=51.58 Aligned_cols=34 Identities=21% Similarity=0.275 Sum_probs=30.2
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCcc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKV 120 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v 120 (231)
++|+|||+|..|+.||..++..|+ +++|+|.+.=
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~-~V~l~d~~~~ 347 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGT-PIVMKDINQH 347 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCC-eEEEEeCCHH
Confidence 479999999999999999999997 8999996643
No 438
>PLN02366 spermidine synthase
Probab=94.08 E-value=0.67 Score=41.22 Aligned_cols=34 Identities=26% Similarity=0.468 Sum_probs=25.3
Q ss_pred cCcEEEEecCchHHHHHHHHHH-hcCceEEEEeCCcc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTR-CGIGRLLLYDYDKV 120 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~-~Gv~~i~LiD~D~v 120 (231)
.++|++||+|+ |+. +..+++ .++.+++++|-|..
T Consensus 92 pkrVLiIGgG~-G~~-~rellk~~~v~~V~~VEiD~~ 126 (308)
T PLN02366 92 PKKVLVVGGGD-GGV-LREIARHSSVEQIDICEIDKM 126 (308)
T ss_pred CCeEEEEcCCc-cHH-HHHHHhCCCCCeEEEEECCHH
Confidence 67899999986 443 445555 46899999997763
No 439
>PRK06484 short chain dehydrogenase; Validated
Probab=94.04 E-value=0.32 Score=45.63 Aligned_cols=84 Identities=23% Similarity=0.301 Sum_probs=53.1
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
..+++++|.| .||+|..+++.|++.|. ++.++|.+. .+.+.+++.+ . .++..+..
T Consensus 267 ~~~k~~lItGas~gIG~~~a~~l~~~G~-~V~~~~r~~------------------~~~~~~~~~~---~--~~~~~~~~ 322 (520)
T PRK06484 267 ESPRVVAITGGARGIGRAVADRFAAAGD-RLLIIDRDA------------------EGAKKLAEAL---G--DEHLSVQA 322 (520)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHh---C--CceeEEEc
Confidence 4567788887 78999999999999997 777776431 1223333222 1 23335666
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
++++.+.+..+++.+.. .+...|++|.|.
T Consensus 323 D~~~~~~~~~~~~~~~~-------~~g~id~li~nA 351 (520)
T PRK06484 323 DITDEAAVESAFAQIQA-------RWGRLDVLVNNA 351 (520)
T ss_pred cCCCHHHHHHHHHHHHH-------HcCCCCEEEECC
Confidence 77776666666654332 234678888764
No 440
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=94.01 E-value=0.076 Score=46.42 Aligned_cols=33 Identities=24% Similarity=0.452 Sum_probs=30.1
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
++|+|||+|..|+.++..|++.|. +++++|.+.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~-~V~l~d~~~ 36 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGY-DVTIVDVSE 36 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCC-eEEEEeCCH
Confidence 579999999999999999999997 799999764
No 441
>PTZ00345 glycerol-3-phosphate dehydrogenase; Provisional
Probab=93.99 E-value=0.19 Score=45.82 Aligned_cols=35 Identities=14% Similarity=0.372 Sum_probs=28.6
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcC------ceEEEEeCCc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGI------GRLLLYDYDK 119 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv------~~i~LiD~D~ 119 (231)
..+|+|+|+|+-|+.+|..|++.|. .+++|+..|.
T Consensus 11 ~~ki~ViGaG~wGtAlA~~l~~n~~~~~~~~~~V~lw~~~~ 51 (365)
T PTZ00345 11 PLKVSVIGSGNWGSAISKVVGENTQRNYIFHNEVRMWVLEE 51 (365)
T ss_pred CCeEEEECCCHHHHHHHHHHHhcCCcccCCCCeEEEEEecc
Confidence 4589999999999999999999874 4677765443
No 442
>PLN00198 anthocyanidin reductase; Provisional
Probab=93.96 E-value=0.84 Score=40.30 Aligned_cols=35 Identities=17% Similarity=0.223 Sum_probs=28.1
Q ss_pred HhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++++|+|.| +|.+|+++++.|...|. ++++++.|
T Consensus 7 ~~~~~vlItG~~GfIG~~l~~~L~~~g~-~V~~~~r~ 42 (338)
T PLN00198 7 TGKKTACVIGGTGFLASLLIKLLLQKGY-AVNTTVRD 42 (338)
T ss_pred CCCCeEEEECCchHHHHHHHHHHHHCCC-EEEEEECC
Confidence 4467899998 88999999999999986 56655544
No 443
>PLN00016 RNA-binding protein; Provisional
Probab=93.93 E-value=0.4 Score=43.34 Aligned_cols=116 Identities=15% Similarity=0.184 Sum_probs=67.1
Q ss_pred HHHHhcCcEEEE----e-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhh-CCC
Q 026893 80 YERIREFSVAIV----G-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADI-NPD 153 (231)
Q Consensus 80 ~~kl~~~~V~Iv----G-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~-np~ 153 (231)
......++|+|+ | .|-+|+++++.|...|. ++++++.+.-....+. . ... ..+..+ .++
T Consensus 47 ~~~~~~~~VLVt~~~~GatG~iG~~lv~~L~~~G~-~V~~l~R~~~~~~~~~----~------~~~----~~~~~l~~~~ 111 (378)
T PLN00016 47 AAAVEKKKVLIVNTNSGGHAFIGFYLAKELVKAGH-EVTLFTRGKEPSQKMK----K------EPF----SRFSELSSAG 111 (378)
T ss_pred hcccccceEEEEeccCCCceeEhHHHHHHHHHCCC-EEEEEecCCcchhhhc----c------Cch----hhhhHhhhcC
Confidence 344556789999 6 58899999999999995 7888776532111110 0 000 011111 123
Q ss_pred cEEEEEeecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC-CHHHHHHHHHHHHHcCC-cEEEeCccCcee
Q 026893 154 VVLESFTLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD-NYEARMAVNQACNELNQ-TWMESGKQSSSC 227 (231)
Q Consensus 154 v~v~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D-~~~~r~~i~~~~~~~~~-p~i~~g~~g~~g 227 (231)
++ .+..++.+ +...+ ...++|+||.+.. ....-..+.++|.+.|+ .+|..+..+.+|
T Consensus 112 v~--~v~~D~~d---~~~~~------------~~~~~d~Vi~~~~~~~~~~~~ll~aa~~~gvkr~V~~SS~~vyg 170 (378)
T PLN00016 112 VK--TVWGDPAD---VKSKV------------AGAGFDVVYDNNGKDLDEVEPVADWAKSPGLKQFLFCSSAGVYK 170 (378)
T ss_pred ce--EEEecHHH---HHhhh------------ccCCccEEEeCCCCCHHHHHHHHHHHHHcCCCEEEEEccHhhcC
Confidence 33 34434332 22111 1247999999864 23444567889998887 588777665544
No 444
>PRK08057 cobalt-precorrin-6x reductase; Reviewed
Probab=93.91 E-value=0.34 Score=41.77 Aligned_cols=95 Identities=17% Similarity=0.291 Sum_probs=64.9
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
..+|+|+|--+=|-.+++.|...|+.-+.=+- .+.|. ..++.+ ..+...+.
T Consensus 2 ~~~IlvlgGT~egr~la~~L~~~g~~v~~Sva----------------t~~g~-----------~~~~~~--~v~~G~l~ 52 (248)
T PRK08057 2 MPRILLLGGTSEARALARALAAAGVDIVLSLA----------------GRTGG-----------PADLPG--PVRVGGFG 52 (248)
T ss_pred CceEEEEechHHHHHHHHHHHhCCCeEEEEEc----------------cCCCC-----------cccCCc--eEEECCCC
Confidence 35799999888899999999988863332111 11122 001233 34555564
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHH--HHHHHHHHHcCCcEEEe
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEAR--MAVNQACNELNQTWMES 220 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r--~~i~~~~~~~~~p~i~~ 220 (231)
+.+.+..|+.. .++++|||++.++... ..+.+.|.+.++|++-.
T Consensus 53 ~~~~l~~~l~~------------~~i~~VIDATHPfA~~is~~a~~ac~~~~ipyiR~ 98 (248)
T PRK08057 53 GAEGLAAYLRE------------EGIDLVIDATHPYAAQISANAAAACRALGIPYLRL 98 (248)
T ss_pred CHHHHHHHHHH------------CCCCEEEECCCccHHHHHHHHHHHHHHhCCcEEEE
Confidence 45677777542 5899999999999866 56889999999999854
No 445
>COG2084 MmsB 3-hydroxyisobutyrate dehydrogenase and related beta-hydroxyacid dehydrogenases [Lipid metabolism]
Probab=93.91 E-value=0.74 Score=40.53 Aligned_cols=124 Identities=15% Similarity=0.210 Sum_probs=71.5
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITT 165 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~ 165 (231)
.+|.+||+|-.|..++.+|.+.|. .++++|.+.-......+ ..|-.-+...++.... .++.|...+.
T Consensus 1 ~kIafIGLG~MG~pmA~~L~~aG~-~v~v~~r~~~ka~~~~~------~~Ga~~a~s~~eaa~~--aDvVitmv~~---- 67 (286)
T COG2084 1 MKIAFIGLGIMGSPMAANLLKAGH-EVTVYNRTPEKAAELLA------AAGATVAASPAEAAAE--ADVVITMLPD---- 67 (286)
T ss_pred CeEEEEcCchhhHHHHHHHHHCCC-EEEEEeCChhhhhHHHH------HcCCcccCCHHHHHHh--CCEEEEecCC----
Confidence 479999999999999999999994 78888766442111100 0111111111111121 2555544442
Q ss_pred ccchHHHHhhhhccCCCCCCCCCCCcEEEEcc-CCHHHHHHHHHHHHHcCCcEEEeCccCce
Q 026893 166 VQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV-DNYEARMAVNQACNELNQTWMESGKQSSS 226 (231)
Q Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~-D~~~~r~~i~~~~~~~~~p~i~~g~~g~~ 226 (231)
.......+.. +++.. ...++=.++|||+ -+...-+.+.+...+.|..|+|+-++|--
T Consensus 68 ~~~V~~V~~g--~~g~~--~~~~~G~i~IDmSTisp~~a~~~a~~~~~~G~~~lDAPVsGg~ 125 (286)
T COG2084 68 DAAVRAVLFG--ENGLL--EGLKPGAIVIDMSTISPETARELAAALAAKGLEFLDAPVSGGV 125 (286)
T ss_pred HHHHHHHHhC--ccchh--hcCCCCCEEEECCCCCHHHHHHHHHHHHhcCCcEEecCccCCc
Confidence 2222222100 00100 1123456666665 46777789999999999999999998853
No 446
>cd05298 GH4_GlvA_pagL_like Glycoside Hydrolases Family 4; GlvA- and pagL-like glycosidases. Bacillus subtilis GlvA and Clostridium acetobutylicum pagL are 6-phospho-alpha-glucosidase, catalyzing the hydrolysis of alpha-glucopyranoside bonds to release glucose from oligosaccharides. The substrate specificities of other members of this subgroup are unknown. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP_PTS). After translocation, these phospho-disaccharides may be hydrolyzed by the GH4 glycoside hydrolases, which include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. Members of this subfamily are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductas
Probab=93.88 E-value=0.21 Score=46.59 Aligned_cols=103 Identities=19% Similarity=0.217 Sum_probs=63.7
Q ss_pred cEEEEecCchHH-HHHHHHHH----hcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHH-HhhCCCcEEEEEe
Q 026893 87 SVAIVGVGGVGS-VAAEMLTR----CGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTL-ADINPDVVLESFT 160 (231)
Q Consensus 87 ~V~IvG~GgvGs-~ia~~La~----~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l-~~~np~v~v~~~~ 160 (231)
||+|||.|++=+ .+..-|+. .++++|+|+|-|.= .+ ..+..+++++ .+..+.++|+...
T Consensus 2 KI~iIGaGS~~tp~li~~l~~~~~~l~~~ei~L~DId~~---rl------------~~v~~l~~~~~~~~g~~~~v~~Tt 66 (437)
T cd05298 2 KIVIAGGGSTYTPGIVKSLLDRKEDFPLRELVLYDIDAE---RQ------------EKVAEAVKILFKENYPEIKFVYTT 66 (437)
T ss_pred eEEEECCcHHHHHHHHHHHHhCcccCCCCEEEEECCCHH---HH------------HHHHHHHHHHHHhhCCCeEEEEEC
Confidence 799999998622 34445543 45689999996652 11 0233344443 4455677766553
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc--CCHHHHHHHHHHHHHcCCcEEEeCccCcee
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV--DNYEARMAVNQACNELNQTWMESGKQSSSC 227 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~--D~~~~r~~i~~~~~~~~~p~i~~g~~g~~g 227 (231)
.. + .-+.+.|+||.+. ...+.|..-.+.+.++|+ +-.-+.|..|
T Consensus 67 dr-------~--------------eAl~gADfVi~~irvGg~~~r~~De~Ip~kyGi--~gqET~G~GG 112 (437)
T cd05298 67 DP-------E--------------EAFTDADFVFAQIRVGGYAMREQDEKIPLKHGV--VGQETCGPGG 112 (437)
T ss_pred CH-------H--------------HHhCCCCEEEEEeeeCCchHHHHHHhHHHHcCc--ceecCccHHH
Confidence 21 1 1357999999986 455777777789999997 3334444444
No 447
>PLN02740 Alcohol dehydrogenase-like
Probab=93.85 E-value=0.58 Score=42.29 Aligned_cols=34 Identities=35% Similarity=0.448 Sum_probs=29.6
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+.+|+|+|+|++|..++..+...|+.+++.+|.+
T Consensus 199 g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~ 232 (381)
T PLN02740 199 GSSVAIFGLGAVGLAVAEGARARGASKIIGVDIN 232 (381)
T ss_pred CCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCC
Confidence 6789999999999999998888998888887753
No 448
>TIGR00036 dapB dihydrodipicolinate reductase.
Probab=93.84 E-value=0.46 Score=41.24 Aligned_cols=31 Identities=19% Similarity=0.370 Sum_probs=24.8
Q ss_pred CcEEEEe-cCchHHHHHHHHHH-hcCceEEEEe
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTR-CGIGRLLLYD 116 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~-~Gv~~i~LiD 116 (231)
.+|+|+| +|..|..++..+.. .++.=.-++|
T Consensus 2 ikV~IiGa~G~MG~~i~~~i~~~~~~elvav~d 34 (266)
T TIGR00036 2 IKVAVAGAAGRMGRELIKAALAAEGLQLVAAFE 34 (266)
T ss_pred eEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEe
Confidence 3899999 59999999999986 4565555666
No 449
>PRK11150 rfaD ADP-L-glycero-D-mannoheptose-6-epimerase; Provisional
Probab=93.83 E-value=0.37 Score=41.88 Aligned_cols=31 Identities=29% Similarity=0.435 Sum_probs=26.8
Q ss_pred EEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 88 VAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 88 V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
|+|.| +|.+|+++++.|...|...+.++|..
T Consensus 2 ilVtGa~GfiG~~l~~~L~~~g~~~v~~~~~~ 33 (308)
T PRK11150 2 IIVTGGAGFIGSNIVKALNDKGITDILVVDNL 33 (308)
T ss_pred EEEecCCcHHHHHHHHHHHhCCCceEEEecCC
Confidence 67887 79999999999999998788888753
No 450
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=93.82 E-value=0.26 Score=47.22 Aligned_cols=35 Identities=29% Similarity=0.382 Sum_probs=31.2
Q ss_pred hcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 84 REFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 84 ~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
.+++|+|||+|..|-.+|..|++.|. +++++|...
T Consensus 136 ~g~~V~VIGaGpaGL~aA~~l~~~G~-~V~v~e~~~ 170 (564)
T PRK12771 136 TGKRVAVIGGGPAGLSAAYHLRRMGH-AVTIFEAGP 170 (564)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCC-eEEEEecCC
Confidence 47899999999999999999999998 599998554
No 451
>PRK06483 dihydromonapterin reductase; Provisional
Probab=93.81 E-value=0.49 Score=39.32 Aligned_cols=33 Identities=18% Similarity=0.118 Sum_probs=26.9
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.++++|.| .||+|.++++.|++.|. ++.++|.+
T Consensus 2 ~k~vlItGas~gIG~~ia~~l~~~G~-~V~~~~r~ 35 (236)
T PRK06483 2 PAPILITGAGQRIGLALAWHLLAQGQ-PVIVSYRT 35 (236)
T ss_pred CceEEEECCCChHHHHHHHHHHHCCC-eEEEEeCC
Confidence 45788888 57899999999999997 67777653
No 452
>TIGR00065 ftsZ cell division protein FtsZ. This family consists of cell division protein FtsZ, a GTPase found in bacteria, the chloroplast of plants, and in archaebacteria. Structurally similar to tubulin, FtsZ undergoes GTP-dependent polymerization into filaments that form a cytoskeleton involved in septum synthesis.
Probab=93.81 E-value=0.33 Score=43.93 Aligned_cols=41 Identities=17% Similarity=0.374 Sum_probs=32.4
Q ss_pred HHHHhcCcEEEEecCchHHHHHHHHHHhcCc--eEEEEeCCcc
Q 026893 80 YERIREFSVAIVGVGGVGSVAAEMLTRCGIG--RLLLYDYDKV 120 (231)
Q Consensus 80 ~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~--~i~LiD~D~v 120 (231)
+.--...+|.|||+||-|+.++..|.+.|+. ++..+|.|.-
T Consensus 12 ~~~~~~~~i~viGvGg~G~n~v~~l~~~~~~~~~~iainTD~~ 54 (349)
T TIGR00065 12 IQPSNKAKIKVIGVGGGGNNTVNRMLEEGVEGVEFIAINTDAQ 54 (349)
T ss_pred cCcccCCeEEEEEeCCcHHHHHHHHHHcCCCceEEEEEECCHH
Confidence 3333456899999999999999999999986 4455788763
No 453
>TIGR02197 heptose_epim ADP-L-glycero-D-manno-heptose-6-epimerase. This family consists of examples of ADP-L-glycero-D-mannoheptose-6-epimerase, an enzyme involved in biosynthesis of the inner core of lipopolysaccharide (LPS) for Gram-negative bacteria. This enzyme is homologous to UDP-glucose 4-epimerase (TIGR01179) and belongs to the NAD dependent epimerase/dehydratase family (pfam01370).
Probab=93.78 E-value=0.57 Score=40.52 Aligned_cols=30 Identities=30% Similarity=0.504 Sum_probs=25.3
Q ss_pred EEEEe-cCchHHHHHHHHHHhcCceEEEEeC
Q 026893 88 VAIVG-VGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 88 V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
|+|.| +|.+|++++..|...|..++.++|.
T Consensus 1 ilItGatG~iG~~l~~~L~~~g~~~v~~~~~ 31 (314)
T TIGR02197 1 IIVTGGAGFIGSNLVKALNERGITDILVVDN 31 (314)
T ss_pred CEEeCCcchhhHHHHHHHHHcCCceEEEEec
Confidence 57777 7999999999999999767777764
No 454
>PRK15076 alpha-galactosidase; Provisional
Probab=93.78 E-value=0.21 Score=46.41 Aligned_cols=95 Identities=13% Similarity=0.170 Sum_probs=54.5
Q ss_pred CcEEEEecCchHHHHHH--HHH-HhcC--ceEEEEeCCccccccccccCCCcCccCCcHHHH-HHHHHHhhCCCcEEEEE
Q 026893 86 FSVAIVGVGGVGSVAAE--MLT-RCGI--GRLLLYDYDKVELANMNRLFFRPEQVGMTKTDA-AVQTLADINPDVVLESF 159 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~--~La-~~Gv--~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~-~~~~l~~~np~v~v~~~ 159 (231)
.+|+|||+|++|...+- .++ ..+. .+++|+|-|.=... ++.. +.+.+....+.+++...
T Consensus 2 ~KIaIIGaGsvg~~~~~~~~i~~~~~l~~~evvLvDid~er~~---------------~~~~l~~~~~~~~~~~~~i~~t 66 (431)
T PRK15076 2 PKITFIGAGSTVFTKNLLGDILSVPALRDAEIALMDIDPERLE---------------ESEIVARKLAESLGASAKITAT 66 (431)
T ss_pred cEEEEECCCHHHhHHHHHHHHhhCccCCCCEEEEECCCHHHHH---------------HHHHHHHHHHHhcCCCeEEEEE
Confidence 48999999999866655 554 2223 48999996542100 1222 23333444445555432
Q ss_pred eecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCH--HHHHHHH-HHHHHcCCc
Q 026893 160 TLNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNY--EARMAVN-QACNELNQT 216 (231)
Q Consensus 160 ~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~--~~r~~i~-~~~~~~~~p 216 (231)
. +.. ..+.++|+||.+.-.. +.+.... +...++|+-
T Consensus 67 t-D~~--------------------eal~dADfVv~ti~vg~~~~~~~~De~Iplk~G~~ 105 (431)
T PRK15076 67 T-DRR--------------------EALQGADYVINAIQVGGYEPCTVTDFEIPKKYGLR 105 (431)
T ss_pred C-CHH--------------------HHhCCCCEEeEeeeeCCcchhhhhhhhhHHHcCCe
Confidence 2 111 1346899999998764 3333233 677788875
No 455
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=93.78 E-value=0.074 Score=50.72 Aligned_cols=35 Identities=20% Similarity=0.342 Sum_probs=32.0
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++++|+|+|+||+|..++..|+..|+ ++++++.+
T Consensus 377 ~~~k~vlIlGaGGagrAia~~L~~~G~-~V~i~nR~ 411 (529)
T PLN02520 377 LAGKLFVVIGAGGAGKALAYGAKEKGA-RVVIANRT 411 (529)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEcCC
Confidence 567899999999999999999999999 89998864
No 456
>PRK06482 short chain dehydrogenase; Provisional
Probab=93.76 E-value=0.38 Score=41.07 Aligned_cols=81 Identities=21% Similarity=0.147 Sum_probs=49.1
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
++|+|.| .|++|+.+++.|+..|. ++++++.+.- +.+. +....+. .+..+..+++
T Consensus 3 k~vlVtGasg~IG~~la~~L~~~g~-~v~~~~r~~~------------------~~~~----~~~~~~~-~~~~~~~D~~ 58 (276)
T PRK06482 3 KTWFITGASSGFGRGMTERLLARGD-RVAATVRRPD------------------ALDD----LKARYGD-RLWVLQLDVT 58 (276)
T ss_pred CEEEEecCCCHHHHHHHHHHHHCCC-EEEEEeCCHH------------------HHHH----HHHhccC-ceEEEEccCC
Confidence 5789998 68999999999999997 5666553210 1111 1111121 3446667777
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+.+.+..++..+.. .+.++|+||.|.
T Consensus 59 ~~~~~~~~~~~~~~-------~~~~id~vi~~a 84 (276)
T PRK06482 59 DSAAVRAVVDRAFA-------ALGRIDVVVSNA 84 (276)
T ss_pred CHHHHHHHHHHHHH-------HcCCCCEEEECC
Confidence 66666655443221 124678888875
No 457
>PF01370 Epimerase: NAD dependent epimerase/dehydratase family; InterPro: IPR001509 This family of proteins utilise NAD as a cofactor. The proteins in this family use nucleotide-sugar substrates for a variety of chemical reactions []. It contains the NAD(P)- binding domain (IPR016040 from INTERPRO) which is a commonly found domain with a core Rossmann-type fold. One of the best studied of these proteins is UDP-galactose 4-epimerase which catalyses the conversion of UDP-galactose to UDP-glucose during galactose metabolism [, ].; GO: 0003824 catalytic activity, 0050662 coenzyme binding, 0044237 cellular metabolic process; PDB: 2NNL_D 3C1T_B 3BXX_C 2IOD_C 2X4G_A 2Q1W_B 3SLG_B 1R66_A 1R6D_A 1KEU_B ....
Probab=93.74 E-value=0.35 Score=39.81 Aligned_cols=102 Identities=18% Similarity=0.204 Sum_probs=62.3
Q ss_pred EEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccCc
Q 026893 88 VAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTV 166 (231)
Q Consensus 88 V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~ 166 (231)
|+|+| +|-+|+++++.|.+.|..-+.+.....-.. ...... .++.+..++.+.
T Consensus 1 IlI~GatG~iG~~l~~~l~~~g~~v~~~~~~~~~~~-------------------~~~~~~-------~~~~~~~dl~~~ 54 (236)
T PF01370_consen 1 ILITGATGFIGSALVRQLLKKGHEVIVLSRSSNSES-------------------FEEKKL-------NVEFVIGDLTDK 54 (236)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTTEEEEEESCSTGGH-------------------HHHHHT-------TEEEEESETTSH
T ss_pred EEEEccCCHHHHHHHHHHHHcCCccccccccccccc-------------------cccccc-------eEEEEEeecccc
Confidence 68887 899999999999999987453322111100 000000 344566666666
Q ss_pred cchHHHHhhhhccCCCCCCCCCCCcEEEEccCCH-----------------HHHHHHHHHHHHcCC-cEEEeCccCcee
Q 026893 167 QGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNY-----------------EARMAVNQACNELNQ-TWMESGKQSSSC 227 (231)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~-----------------~~r~~i~~~~~~~~~-p~i~~g~~g~~g 227 (231)
+.++.+++. ..+|.||.+.... ..-..+.+.|++.++ .++..++.+.+|
T Consensus 55 ~~~~~~~~~------------~~~d~vi~~a~~~~~~~~~~~~~~~~~~n~~~~~~ll~~~~~~~~~~~i~~sS~~~y~ 121 (236)
T PF01370_consen 55 EQLEKLLEK------------ANIDVVIHLAAFSSNPESFEDPEEIIEANVQGTRNLLEAAREAGVKRFIFLSSASVYG 121 (236)
T ss_dssp HHHHHHHHH------------HTESEEEEEBSSSSHHHHHHSHHHHHHHHHHHHHHHHHHHHHHTTSEEEEEEEGGGGT
T ss_pred ccccccccc------------cCceEEEEeecccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 666655432 2568887775531 111457778888887 888887765554
No 458
>PRK08263 short chain dehydrogenase; Provisional
Probab=93.73 E-value=0.44 Score=40.73 Aligned_cols=33 Identities=27% Similarity=0.228 Sum_probs=26.8
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+++|+|.| .|++|..+++.|++.|. ++.+++.+
T Consensus 3 ~k~vlItGasg~iG~~~a~~l~~~g~-~V~~~~r~ 36 (275)
T PRK08263 3 EKVWFITGASRGFGRAWTEAALERGD-RVVATARD 36 (275)
T ss_pred CCEEEEeCCCChHHHHHHHHHHHCCC-EEEEEECC
Confidence 45788887 78999999999999995 57776653
No 459
>cd05197 GH4_glycoside_hydrolases Glycoside Hydrases Family 4. Glycoside hydrolases cleave glycosidic bonds to release smaller sugars from oligo- or polysaccharides. Some bacteria simultaneously translocate and phosphorylate disaccharides via the phosphoenolpyruvate-dependent phosphotransferase system (PEP-PTS). After translocation, these phospho-disaccharides may be hydrolyzed by GH4 glycoside hydrolases. Other organisms (such as archaea and Thermotoga maritima) lack the PEP-PTS system, but have several enzymes normally associated with the PEP-PTS operon. GH4 family members include 6-phospho-beta-glucosidases, 6-phospho-alpha-glucosidases, alpha-glucosidases/alpha-glucuronidases (only from Thermotoga), and alpha-galactosidases. They require two cofactors, NAD+ and a divalent metal (Mn2+, Ni2+, Mg2+), for activity. Some also require reducing conditions. GH4 glycoside hydrolases are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families in
Probab=93.72 E-value=0.33 Score=45.09 Aligned_cols=104 Identities=17% Similarity=0.162 Sum_probs=64.9
Q ss_pred cEEEEecCchHH-HHHHHHHH----hcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHH-HHhhCCCcEEEEEe
Q 026893 87 SVAIVGVGGVGS-VAAEMLTR----CGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQT-LADINPDVVLESFT 160 (231)
Q Consensus 87 ~V~IvG~GgvGs-~ia~~La~----~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~-l~~~np~v~v~~~~ 160 (231)
||+|||.|++=+ .+...|++ .++++|.|+|-|.=..+ .+..++++ ..+..+.++++...
T Consensus 2 KI~iIGgGS~~tp~li~~l~~~~~~l~~~ei~L~Did~~Rl~---------------~v~~l~~~~~~~~g~~~~v~~tt 66 (425)
T cd05197 2 KIAIIGGGSSFTPELVSGLLKTPEELPISEVTLYDIDEERLD---------------IILTIAKRYVEEVGADIKFEKTM 66 (425)
T ss_pred EEEEECCchHhHHHHHHHHHcChhhCCCCEEEEEcCCHHHHH---------------HHHHHHHHHHHhhCCCeEEEEeC
Confidence 799999998522 34555553 45689999997643111 23334444 45566777766554
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc--CCHHHHHHHHHHHHHcCCcEEEeCccCceeE
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV--DNYEARMAVNQACNELNQTWMESGKQSSSCI 228 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~--D~~~~r~~i~~~~~~~~~p~i~~g~~g~~g~ 228 (231)
. . + .-+.++||||.++ ...+.|..-.+.+.++|+-= .-+.|..|.
T Consensus 67 D-~------~--------------~Al~gADfVi~~irvGg~~~r~~De~Iplk~G~~g--qeT~G~GG~ 113 (425)
T cd05197 67 D-L------E--------------DAIIDADFVINQFRVGGLTYREKDEQIPLKYGVIG--QETVGPGGT 113 (425)
T ss_pred C-H------H--------------HHhCCCCEEEEeeecCChHHHHHHHhHHHHcCccc--ccccCcchh
Confidence 2 1 1 1357999999986 45566666667888887633 455555553
No 460
>TIGR01772 MDH_euk_gproteo malate dehydrogenase, NAD-dependent. Although malate dehydrogenases have in some cases been mistaken for lactate dehydrogenases due to the similarity of these two substrates and the apparent ease with which evolution can toggle these activities, critical residues have been identified which can discriminate between the two activities. At the time of the creation of this model no hits above the trusted cutoff contained critical residues typical of lactate dehydrogenases.
Probab=93.67 E-value=0.094 Score=46.70 Aligned_cols=33 Identities=33% Similarity=0.536 Sum_probs=29.6
Q ss_pred cEEEEec-CchHHHHHHHHHHhcC-ceEEEEeCCc
Q 026893 87 SVAIVGV-GGVGSVAAEMLTRCGI-GRLLLYDYDK 119 (231)
Q Consensus 87 ~V~IvG~-GgvGs~ia~~La~~Gv-~~i~LiD~D~ 119 (231)
||.|||+ |.+|+.+|..|+..|+ .+|.|+|-+.
T Consensus 1 KV~IiGaaG~VG~~~a~~l~~~~~~~elvL~Di~~ 35 (312)
T TIGR01772 1 KVAVLGAAGGIGQPLSLLLKLQPYVSELSLYDIAG 35 (312)
T ss_pred CEEEECCCCHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 6899999 9999999999999887 6899999654
No 461
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.66 E-value=0.39 Score=44.46 Aligned_cols=36 Identities=22% Similarity=0.466 Sum_probs=30.9
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
+.+++|+|+|.|+.|..+++.|+..|. +++++|...
T Consensus 3 ~~~~~~~v~G~g~~G~~~a~~l~~~g~-~v~~~d~~~ 38 (445)
T PRK04308 3 FQNKKILVAGLGGTGISMIAYLRKNGA-EVAAYDAEL 38 (445)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCC-EEEEEeCCC
Confidence 346799999999999999999999996 688888543
No 462
>PLN00106 malate dehydrogenase
Probab=93.65 E-value=0.1 Score=46.66 Aligned_cols=35 Identities=31% Similarity=0.617 Sum_probs=31.3
Q ss_pred cCcEEEEec-CchHHHHHHHHHHhcC-ceEEEEeCCc
Q 026893 85 EFSVAIVGV-GGVGSVAAEMLTRCGI-GRLLLYDYDK 119 (231)
Q Consensus 85 ~~~V~IvG~-GgvGs~ia~~La~~Gv-~~i~LiD~D~ 119 (231)
..||+|+|+ |.+|+.++..|+..|. .++.|+|-+.
T Consensus 18 ~~KV~IiGaaG~VG~~~a~~l~~~~~~~el~L~Di~~ 54 (323)
T PLN00106 18 GFKVAVLGAAGGIGQPLSLLMKMNPLVSELHLYDIAN 54 (323)
T ss_pred CCEEEEECCCCHHHHHHHHHHHhCCCCCEEEEEecCC
Confidence 469999999 9999999999998887 5899999755
No 463
>TIGR01830 3oxo_ACP_reduc 3-oxoacyl-(acyl-carrier-protein) reductase. This model represents 3-oxoacyl-[ACP] reductase, also called 3-ketoacyl-acyl carrier protein reductase, an enzyme of fatty acid biosynthesis.
Probab=93.65 E-value=0.61 Score=38.44 Aligned_cols=84 Identities=12% Similarity=0.252 Sum_probs=52.4
Q ss_pred EEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccCc
Q 026893 88 VAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTV 166 (231)
Q Consensus 88 V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~ 166 (231)
|+|.| .|++|+.+++.|++.|. ++.+++.... .+.+.+.+.+... ..+++.+..++++.
T Consensus 1 vlItG~~g~iG~~la~~l~~~G~-~v~~~~r~~~-----------------~~~~~~~~~~~~~--~~~~~~~~~D~~~~ 60 (239)
T TIGR01830 1 ALVTGASRGIGRAIALKLAKEGA-KVIITYRSSE-----------------EGAEEVVEELKAY--GVKALGVVCDVSDR 60 (239)
T ss_pred CEEECCCcHHHHHHHHHHHHCCC-EEEEEeCCch-----------------hHHHHHHHHHHhc--CCceEEEEecCCCH
Confidence 46676 78999999999999997 5777664321 1233334444433 23455677777776
Q ss_pred cchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 167 QGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
+.++..+..+... ..+.|+||.+..
T Consensus 61 ~~~~~~~~~~~~~-------~~~id~vi~~ag 85 (239)
T TIGR01830 61 EDVKAVVEEIEEE-------LGPIDILVNNAG 85 (239)
T ss_pred HHHHHHHHHHHHH-------hCCCCEEEECCC
Confidence 6666655443221 246788887654
No 464
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=93.64 E-value=0.092 Score=46.44 Aligned_cols=33 Identities=24% Similarity=0.417 Sum_probs=29.1
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
.+|+|+|+|++|+.++..|++.| .+++++..+.
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g-~~V~~~~r~~ 38 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAG-FDVHFLLRSD 38 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCC-CeEEEEEeCC
Confidence 58999999999999999999999 4778877665
No 465
>TIGR01763 MalateDH_bact malate dehydrogenase, NAD-dependent. The annotation of Botryococcus braunii as lactate dehydrogenase appears top be in error. This was initially annotated as MDH by Swiss-Prot and then changed. The rationale for either of these annotations is not traceable.
Probab=93.64 E-value=0.095 Score=46.44 Aligned_cols=32 Identities=28% Similarity=0.434 Sum_probs=29.7
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
.+|.|||+|-+|+.+|..|+..|.++++|+|.
T Consensus 2 ~KV~VIGaG~vG~~iA~~la~~g~~~VvlvDi 33 (305)
T TIGR01763 2 KKISVIGAGFVGATTAFRLAEKELADLVLLDV 33 (305)
T ss_pred CEEEEECcCHHHHHHHHHHHHcCCCeEEEEeC
Confidence 48999999999999999999998878999996
No 466
>PRK09291 short chain dehydrogenase; Provisional
Probab=93.62 E-value=0.6 Score=39.13 Aligned_cols=80 Identities=20% Similarity=0.127 Sum_probs=48.7
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
+++|+|.| .|++|..+++.|+..|. ++++.+.+. .+.+.+.+......+. +.....++
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~-~v~~~~r~~------------------~~~~~~~~~~~~~~~~--~~~~~~D~ 60 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGH-NVIAGVQIA------------------PQVTALRAEAARRGLA--LRVEKLDL 60 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCC-EEEEEeCCH------------------HHHHHHHHHHHhcCCc--ceEEEeeC
Confidence 35789998 58999999999999996 444444321 1233344444444444 44555666
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+.... -.+.|+||.|..
T Consensus 61 ~~~~~~~~~~-------------~~~id~vi~~ag 82 (257)
T PRK09291 61 TDAIDRAQAA-------------EWDVDVLLNNAG 82 (257)
T ss_pred CCHHHHHHHh-------------cCCCCEEEECCC
Confidence 6544444321 137899998753
No 467
>PRK06199 ornithine cyclodeaminase; Validated
Probab=93.62 E-value=0.31 Score=44.62 Aligned_cols=76 Identities=21% Similarity=0.363 Sum_probs=56.6
Q ss_pred cCcEEEEecCchHHHHHHHHHH-h-cCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCc-EEEEEee
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTR-C-GIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDV-VLESFTL 161 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~-~-Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v-~v~~~~~ 161 (231)
.++++|+|+|.-+-.-+..++. . ++.++.++|.+.- |++.+++++.+..+++ .+....
T Consensus 155 a~~l~iiG~G~QA~~~l~a~~~v~~~i~~V~v~~r~~~------------------~a~~f~~~~~~~~~~~~~v~~~~- 215 (379)
T PRK06199 155 SKVVGLLGPGVMGKTILAAFMAVCPGIDTIKIKGRGQK------------------SLDSFATWVAETYPQITNVEVVD- 215 (379)
T ss_pred CCEEEEECCcHHHHHHHHHHHHhcCCccEEEEECCCHH------------------HHHHHHHHHHHhcCCCceEEEeC-
Confidence 4789999999999999998876 3 4899999886655 8888899998876654 344432
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDN 199 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~ 199 (231)
+.+ ..+.++|+|+.|+.+
T Consensus 216 ------s~~--------------eav~~ADIVvtaT~s 233 (379)
T PRK06199 216 ------SIE--------------EVVRGSDIVTYCNSG 233 (379)
T ss_pred ------CHH--------------HHHcCCCEEEEccCC
Confidence 112 124689999998854
No 468
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=93.59 E-value=0.32 Score=45.09 Aligned_cols=33 Identities=27% Similarity=0.407 Sum_probs=28.9
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+..|+|+|+|+.|-.+|+.|.+.|. +++..|..
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~-~v~~~D~~ 38 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGI-PFAVMDSR 38 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCC-eEEEEeCC
Confidence 4579999999999999999999997 78888843
No 469
>PRK12747 short chain dehydrogenase; Provisional
Probab=93.59 E-value=0.56 Score=39.36 Aligned_cols=93 Identities=17% Similarity=0.242 Sum_probs=50.7
Q ss_pred hcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeec
Q 026893 84 REFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLN 162 (231)
Q Consensus 84 ~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~ 162 (231)
++++++|.| .||+|.++++.|++.|. ++.+.+...- .+.+.+...+.... ..+..+..+
T Consensus 3 ~~k~~lItGas~gIG~~ia~~l~~~G~-~v~~~~~~~~-----------------~~~~~~~~~~~~~~--~~~~~~~~D 62 (252)
T PRK12747 3 KGKVALVTGASRGIGRAIAKRLANDGA-LVAIHYGNRK-----------------EEAEETVYEIQSNG--GSAFSIGAN 62 (252)
T ss_pred CCCEEEEeCCCChHHHHHHHHHHHCCC-eEEEEcCCCH-----------------HHHHHHHHHHHhcC--CceEEEecc
Confidence 467888887 67999999999999996 4555432110 13333334444332 233455566
Q ss_pred ccCccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 163 ITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 163 i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
+.+.+....+++.+....-. .......|++|.+.
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~-~~g~~~id~lv~~A 96 (252)
T PRK12747 63 LESLHGVEALYSSLDNELQN-RTGSTKFDILINNA 96 (252)
T ss_pred cCCHHHHHHHHHHHHHHhhh-hcCCCCCCEEEECC
Confidence 66555555555443221000 00013678877664
No 470
>PRK06180 short chain dehydrogenase; Provisional
Probab=93.57 E-value=0.41 Score=41.01 Aligned_cols=83 Identities=13% Similarity=0.181 Sum_probs=50.1
Q ss_pred cCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecc
Q 026893 85 EFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNI 163 (231)
Q Consensus 85 ~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i 163 (231)
.++|+|.| .||+|..+++.|++.|. ++.+++.+.- +.+ .+...++ -.+..+..++
T Consensus 4 ~~~vlVtGasggiG~~la~~l~~~G~-~V~~~~r~~~------------------~~~----~l~~~~~-~~~~~~~~D~ 59 (277)
T PRK06180 4 MKTWLITGVSSGFGRALAQAALAAGH-RVVGTVRSEA------------------ARA----DFEALHP-DRALARLLDV 59 (277)
T ss_pred CCEEEEecCCChHHHHHHHHHHhCcC-EEEEEeCCHH------------------HHH----HHHhhcC-CCeeEEEccC
Confidence 45788998 58999999999999997 5777764321 111 1222222 1234556667
Q ss_pred cCccchHHHHhhhhccCCCCCCCCCCCcEEEEccC
Q 026893 164 TTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVD 198 (231)
Q Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D 198 (231)
++.+.+..+++.+.. .+..+|+||.|..
T Consensus 60 ~d~~~~~~~~~~~~~-------~~~~~d~vv~~ag 87 (277)
T PRK06180 60 TDFDAIDAVVADAEA-------TFGPIDVLVNNAG 87 (277)
T ss_pred CCHHHHHHHHHHHHH-------HhCCCCEEEECCC
Confidence 666666655543322 1246788887753
No 471
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=93.56 E-value=0.12 Score=45.20 Aligned_cols=35 Identities=29% Similarity=0.376 Sum_probs=31.5
Q ss_pred cEEEEecCchHHHHHHHHHHhcCceEEEEeCCcccc
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVEL 122 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~ 122 (231)
.|+|||.|-+|+.+|..|++.|. +++|+|.+.+..
T Consensus 1 DvvIIGaGi~G~~~A~~La~~G~-~V~l~e~~~~~~ 35 (358)
T PF01266_consen 1 DVVIIGAGIAGLSTAYELARRGH-SVTLLERGDIGS 35 (358)
T ss_dssp EEEEECTSHHHHHHHHHHHHTTS-EEEEEESSSTTS
T ss_pred CEEEECcCHHHHHHHHHHHHCCC-eEEEEeeccccc
Confidence 48999999999999999999998 999999995543
No 472
>TIGR03376 glycerol3P_DH glycerol-3-phosphate dehydrogenase (NAD(+)). Members of this protein family are the eukaryotic enzyme, glycerol-3-phosphate dehydrogenase (NAD(+)) (EC 1.1.1.8). Enzymatic activity for 1.1.1.8 is defined as sn-glycerol 3-phosphate + NAD(+) = glycerone phosphate + NADH. Note the very similar reactions of enzymes defined as EC 1.1.1.94 and 1.1.99.5, assigned to families of proteins in the bacteria.
Probab=93.52 E-value=0.32 Score=43.92 Aligned_cols=31 Identities=23% Similarity=0.457 Sum_probs=26.3
Q ss_pred cEEEEecCchHHHHHHHHHHhcC-------ceEEEEeC
Q 026893 87 SVAIVGVGGVGSVAAEMLTRCGI-------GRLLLYDY 117 (231)
Q Consensus 87 ~V~IvG~GgvGs~ia~~La~~Gv-------~~i~LiD~ 117 (231)
+|+|+|+|..|+.+|..|+..|. .+++|+..
T Consensus 1 kI~VIGaG~wGtALA~~la~ng~~~~~~~~~~V~lw~~ 38 (342)
T TIGR03376 1 RVAVVGSGNWGTAIAKIVAENARALPELFEESVRMWVF 38 (342)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCcccccCCceEEEEEe
Confidence 58999999999999999999772 47777764
No 473
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.51 E-value=0.1 Score=46.76 Aligned_cols=37 Identities=27% Similarity=0.586 Sum_probs=32.6
Q ss_pred HHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 81 ERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 81 ~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
..|++++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~-~V~~~d~~ 178 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGA-TITAYDAY 178 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCC-EEEEEeCC
Confidence 35889999999999999999999998886 78888854
No 474
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=93.48 E-value=0.11 Score=51.64 Aligned_cols=33 Identities=24% Similarity=0.388 Sum_probs=29.7
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
++|.|||+|..|+.||..++..|+ +++|+|.+.
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~-~V~l~d~~~ 368 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGL-KTVLKDATP 368 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCC-cEEEecCCH
Confidence 579999999999999999999997 888998664
No 475
>PRK13243 glyoxylate reductase; Reviewed
Probab=93.45 E-value=0.097 Score=46.97 Aligned_cols=36 Identities=25% Similarity=0.527 Sum_probs=32.1
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.|.+++|.|||+|.+|..+|+.|...|. ++..+|..
T Consensus 147 ~L~gktvgIiG~G~IG~~vA~~l~~~G~-~V~~~d~~ 182 (333)
T PRK13243 147 DVYGKTIGIIGFGRIGQAVARRAKGFGM-RILYYSRT 182 (333)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCC-EEEEECCC
Confidence 5889999999999999999999998887 67788754
No 476
>PRK05693 short chain dehydrogenase; Provisional
Probab=93.45 E-value=0.41 Score=40.84 Aligned_cols=32 Identities=22% Similarity=0.330 Sum_probs=25.9
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
++++|.| .||+|..+++.|++.|. ++.+.+.+
T Consensus 2 k~vlItGasggiG~~la~~l~~~G~-~V~~~~r~ 34 (274)
T PRK05693 2 PVVLITGCSSGIGRALADAFKAAGY-EVWATARK 34 (274)
T ss_pred CEEEEecCCChHHHHHHHHHHHCCC-EEEEEeCC
Confidence 4688887 58999999999999986 67776643
No 477
>PLN02852 ferredoxin-NADP+ reductase
Probab=93.45 E-value=0.44 Score=45.12 Aligned_cols=41 Identities=24% Similarity=0.322 Sum_probs=33.2
Q ss_pred cCcEEEEecCchHHHHHHHHHH--hcCceEEEEeCCccccccccc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTR--CGIGRLLLYDYDKVELANMNR 127 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~--~Gv~~i~LiD~D~v~~~Nl~R 127 (231)
.++|+|||.|..|.++|..|++ .|+ +++|+|.... +-.+.|
T Consensus 26 ~~~VaIVGaGPAGl~AA~~L~~~~~g~-~Vtv~E~~p~-pgGlvr 68 (491)
T PLN02852 26 PLHVCVVGSGPAGFYTADKLLKAHDGA-RVDIIERLPT-PFGLVR 68 (491)
T ss_pred CCcEEEECccHHHHHHHHHHHhhCCCC-eEEEEecCCC-CcceEe
Confidence 5689999999999999999997 454 8999997763 444544
No 478
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=93.43 E-value=0.11 Score=47.42 Aligned_cols=33 Identities=24% Similarity=0.480 Sum_probs=30.6
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
++|+|||.|-+|+.+|..|++.|. +++++|.+.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~-~V~vle~~~ 34 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGY-QVTVFDRHR 34 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCC-eEEEEeCCC
Confidence 589999999999999999999996 899999886
No 479
>PLN02260 probable rhamnose biosynthetic enzyme
Probab=93.43 E-value=0.66 Score=45.28 Aligned_cols=34 Identities=24% Similarity=0.241 Sum_probs=27.7
Q ss_pred hcCcEEEEe-cCchHHHHHHHHHHhcC-ceEEEEeC
Q 026893 84 REFSVAIVG-VGGVGSVAAEMLTRCGI-GRLLLYDY 117 (231)
Q Consensus 84 ~~~~V~IvG-~GgvGs~ia~~La~~Gv-~~i~LiD~ 117 (231)
+.++|+|.| +|-+|+++++.|...|- -+++.+|.
T Consensus 5 ~~~~VLVTGatGfIG~~lv~~Ll~~g~~~~V~~~d~ 40 (668)
T PLN02260 5 EPKNILITGAAGFIASHVANRLIRNYPDYKIVVLDK 40 (668)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHhCCCCEEEEEeC
Confidence 467999998 79999999999998853 36777764
No 480
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=93.41 E-value=0.14 Score=39.89 Aligned_cols=31 Identities=29% Similarity=0.514 Sum_probs=26.2
Q ss_pred EEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 88 VAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 88 V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
|+|+|+|++|+.+|-.|.+.|. ++++++...
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~-~V~l~~r~~ 31 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGH-DVTLVSRSP 31 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTC-EEEEEESHH
T ss_pred CEEECcCHHHHHHHHHHHHCCC-ceEEEEccc
Confidence 7899999999999999999776 578876433
No 481
>cd01337 MDH_glyoxysomal_mitochondrial Glyoxysomal and mitochondrial malate dehydrogenases. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carboxylation of pyruvate. Members of this subfamily are localized to the glycosome and mitochondria. MDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=93.38 E-value=0.1 Score=46.43 Aligned_cols=32 Identities=34% Similarity=0.589 Sum_probs=29.5
Q ss_pred cEEEEec-CchHHHHHHHHHHhcC-ceEEEEeCC
Q 026893 87 SVAIVGV-GGVGSVAAEMLTRCGI-GRLLLYDYD 118 (231)
Q Consensus 87 ~V~IvG~-GgvGs~ia~~La~~Gv-~~i~LiD~D 118 (231)
||.|||+ |.+|+.+|..|+..|+ .+|.|+|-.
T Consensus 2 KI~IIGaaG~VG~~~a~~l~~~~~~~elvLiDi~ 35 (310)
T cd01337 2 KVAVLGAAGGIGQPLSLLLKLNPLVSELALYDIV 35 (310)
T ss_pred EEEEECCCCHHHHHHHHHHHhCCCCcEEEEEecC
Confidence 7999999 9999999999999887 689999975
No 482
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=93.38 E-value=0.11 Score=45.73 Aligned_cols=35 Identities=23% Similarity=0.309 Sum_probs=32.3
Q ss_pred HhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 83 IREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 83 l~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
+.+++|+|+|.|++|..++..|.+.|. +++++|.+
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga-~V~v~~r~ 184 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGA-NVTVGARK 184 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCC-EEEEEECC
Confidence 568999999999999999999999997 99999866
No 483
>PRK12367 short chain dehydrogenase; Provisional
Probab=93.35 E-value=0.16 Score=43.23 Aligned_cols=41 Identities=15% Similarity=0.236 Sum_probs=34.9
Q ss_pred HHHHHHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 78 ENYERIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 78 ~~~~kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
..|.++++++++|.| .||+|.++++.|++.|. ++.+++.+.
T Consensus 7 ~~~~~l~~k~~lITGas~gIG~ala~~l~~~G~-~Vi~~~r~~ 48 (245)
T PRK12367 7 MAQSTWQGKRIGITGASGALGKALTKAFRAKGA-KVIGLTHSK 48 (245)
T ss_pred hhHHhhCCCEEEEEcCCcHHHHHHHHHHHHCCC-EEEEEECCc
Confidence 568999999999998 57999999999999997 677777653
No 484
>PRK13301 putative L-aspartate dehydrogenase; Provisional
Probab=93.33 E-value=0.2 Score=43.53 Aligned_cols=114 Identities=17% Similarity=0.180 Sum_probs=61.4
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceE---EEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEee
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRL---LLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTL 161 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i---~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~ 161 (231)
..||.|||||.+|..+++.|..-+...+ .+.|.+.-...+ +- +..++-.--+.+....|++.|++-..
T Consensus 2 ~~rvgiIG~GaIG~~va~~l~~~~~~~~~l~~V~~~~~~~~~~----~~-----~~~~~~~~l~~ll~~~~DlVVE~A~~ 72 (267)
T PRK13301 2 THRIAFIGLGAIASDVAAGLLADAAQPCQLAALTRNAADLPPA----LA-----GRVALLDGLPGLLAWRPDLVVEAAGQ 72 (267)
T ss_pred ceEEEEECccHHHHHHHHHHhcCCCCceEEEEEecCCHHHHHH----hh-----ccCcccCCHHHHhhcCCCEEEECCCH
Confidence 3589999999999999999865433222 233332210001 10 11111111233345568887776543
Q ss_pred cccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCH---HHHHHHHHHHHHcCCc-EEEeC
Q 026893 162 NITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNY---EARMAVNQACNELNQT-WMESG 221 (231)
Q Consensus 162 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~---~~r~~i~~~~~~~~~p-~i~~g 221 (231)
+.+..+...+ +-.+.|+++.++.-+ +....+.+.|++.+.. ++-+|
T Consensus 73 -----~av~e~~~~i---------L~~g~dlvv~SvGALaD~~~~~~l~~~A~~~g~~i~ipSG 122 (267)
T PRK13301 73 -----QAIAEHAEGC---------LTAGLDMIICSAGALADDALRARLIAAAEAGGARIRVPAG 122 (267)
T ss_pred -----HHHHHHHHHH---------HhcCCCEEEEChhHhcCHHHHHHHHHHHHhCCCEEEEeCh
Confidence 2333332211 124789988876544 4667788888887643 34433
No 485
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=93.32 E-value=0.78 Score=33.35 Aligned_cols=77 Identities=14% Similarity=0.014 Sum_probs=50.8
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeeccc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNIT 164 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~ 164 (231)
+.+|+-+||| .|......+.+.+-.+++-+|.+.- -.+.+++++.+....-+++.+..++
T Consensus 2 ~~~vLDlGcG-~G~~~~~l~~~~~~~~v~gvD~s~~------------------~~~~a~~~~~~~~~~~~i~~~~~d~- 61 (112)
T PF12847_consen 2 GGRVLDLGCG-TGRLSIALARLFPGARVVGVDISPE------------------MLEIARERAAEEGLSDRITFVQGDA- 61 (112)
T ss_dssp TCEEEEETTT-TSHHHHHHHHHHTTSEEEEEESSHH------------------HHHHHHHHHHHTTTTTTEEEEESCC-
T ss_pred CCEEEEEcCc-CCHHHHHHHhcCCCCEEEEEeCCHH------------------HHHHHHHHHHhcCCCCCeEEEECcc-
Confidence 5789999998 5777666665556677999997544 4555666665544455555666555
Q ss_pred CccchHHHHhhhhccCCCCCCCCCCCcEEEEcc
Q 026893 165 TVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCV 197 (231)
Q Consensus 165 ~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~ 197 (231)
. ... ....+||+|+...
T Consensus 62 ~-~~~---------------~~~~~~D~v~~~~ 78 (112)
T PF12847_consen 62 E-FDP---------------DFLEPFDLVICSG 78 (112)
T ss_dssp H-GGT---------------TTSSCEEEEEECS
T ss_pred c-cCc---------------ccCCCCCEEEECC
Confidence 1 000 2456899999877
No 486
>smart00822 PKS_KR This enzymatic domain is part of bacterial polyketide synthases and catalyses the first step in the reductive modification of the beta-carbonyl centres in the growing polyketide chain. It uses NADPH to reduce the keto group to a hydroxy group.
Probab=93.31 E-value=0.74 Score=35.47 Aligned_cols=31 Identities=32% Similarity=0.501 Sum_probs=25.4
Q ss_pred cEEEEe-cCchHHHHHHHHHHhcCceEEEEeC
Q 026893 87 SVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 87 ~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
+++|.| +|++|.++++.|+..|...+.+.+.
T Consensus 2 ~~li~Ga~~~iG~~~~~~l~~~g~~~v~~~~r 33 (180)
T smart00822 2 TYLITGGLGGLGLELARWLAERGARHLVLLSR 33 (180)
T ss_pred EEEEEcCCChHHHHHHHHHHHhhCCeEEEEeC
Confidence 577776 7899999999999999866776654
No 487
>PRK08818 prephenate dehydrogenase; Provisional
Probab=93.31 E-value=0.43 Score=43.54 Aligned_cols=35 Identities=29% Similarity=0.209 Sum_probs=28.6
Q ss_pred HhcCcEEEEec-CchHHHHHHHHHHhcCceEEEEeC
Q 026893 83 IREFSVAIVGV-GGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 83 l~~~~V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
+...+|+|||+ |.+|..+++.|....-.+++-+|.
T Consensus 2 ~~~~~I~IIGl~GliGgslA~alk~~~~~~V~g~D~ 37 (370)
T PRK08818 2 IAQPVVGIVGSAGAYGRWLARFLRTRMQLEVIGHDP 37 (370)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 34679999999 999999999998754446777875
No 488
>PRK06523 short chain dehydrogenase; Provisional
Probab=93.31 E-value=0.26 Score=41.59 Aligned_cols=37 Identities=16% Similarity=0.343 Sum_probs=31.6
Q ss_pred HHhcCcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 82 RIREFSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 82 kl~~~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
++++++|+|.| .||+|+++++.|+..|. ++.+++.+.
T Consensus 6 ~~~~k~vlItGas~gIG~~ia~~l~~~G~-~v~~~~r~~ 43 (260)
T PRK06523 6 ELAGKRALVTGGTKGIGAATVARLLEAGA-RVVTTARSR 43 (260)
T ss_pred CCCCCEEEEECCCCchhHHHHHHHHHCCC-EEEEEeCCh
Confidence 46788999998 58999999999999997 588888764
No 489
>PLN02712 arogenate dehydrogenase
Probab=93.29 E-value=0.83 Score=44.89 Aligned_cols=36 Identities=28% Similarity=0.488 Sum_probs=31.2
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
.++..+|.|||+|.+|..+++.|...|. ++..+|.+
T Consensus 366 ~~~~~kIgIIGlG~mG~slA~~L~~~G~-~V~~~dr~ 401 (667)
T PLN02712 366 DGSKLKIAIVGFGNFGQFLAKTMVKQGH-TVLAYSRS 401 (667)
T ss_pred CCCCCEEEEEecCHHHHHHHHHHHHCcC-EEEEEECC
Confidence 3567899999999999999999999885 68888865
No 490
>PRK08177 short chain dehydrogenase; Provisional
Probab=93.29 E-value=0.56 Score=38.79 Aligned_cols=33 Identities=18% Similarity=0.182 Sum_probs=28.4
Q ss_pred CcEEEEe-cCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 86 FSVAIVG-VGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 86 ~~V~IvG-~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
++|+|.| .||+|..+++.|++.|. ++.++|.+.
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~-~V~~~~r~~ 35 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGW-QVTATVRGP 35 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCC-EEEEEeCCC
Confidence 4688887 89999999999999997 788888654
No 491
>PF05368 NmrA: NmrA-like family; InterPro: IPR008030 NmrA is a negative transcriptional regulator involved in the post-translational modification of the transcription factor AreA. NmrA is part of a system controlling nitrogen metabolite repression in fungi []. This family only contains a few sequences as iteration results in significant matches to other Rossmann fold families.; PDB: 2ZCV_A 2ZCU_A 2R6J_B 3C3X_A 2QZZ_B 2QYS_A 2QX7_A 2QW8_A 2R2G_B 3E5M_B ....
Probab=93.29 E-value=2 Score=35.66 Aligned_cols=93 Identities=16% Similarity=0.197 Sum_probs=57.5
Q ss_pred EEEEec-CchHHHHHHHHHHhcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEeecccCc
Q 026893 88 VAIVGV-GGVGSVAAEMLTRCGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFTLNITTV 166 (231)
Q Consensus 88 V~IvG~-GgvGs~ia~~La~~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~~~i~~~ 166 (231)
|+|+|. |.+|+.++..|...|. +++.+=.+. + ......++. +++++ ...+..+.
T Consensus 1 I~V~GatG~~G~~v~~~L~~~~~-~V~~l~R~~-------------------~-~~~~~~l~~--~g~~v--v~~d~~~~ 55 (233)
T PF05368_consen 1 ILVTGATGNQGRSVVRALLSAGF-SVRALVRDP-------------------S-SDRAQQLQA--LGAEV--VEADYDDP 55 (233)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTG-CEEEEESSS-------------------H-HHHHHHHHH--TTTEE--EES-TT-H
T ss_pred CEEECCccHHHHHHHHHHHhCCC-CcEEEEecc-------------------c-hhhhhhhhc--ccceE--eecccCCH
Confidence 789985 9999999999999665 344421111 1 112333444 35553 35555544
Q ss_pred cchHHHHhhhhccCCCCCCCCCCCcEEEEccCC-----HHHHHHHHHHHHHcCCcEEE
Q 026893 167 QGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDN-----YEARMAVNQACNELNQTWME 219 (231)
Q Consensus 167 ~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~-----~~~r~~i~~~~~~~~~p~i~ 219 (231)
+.+.. .++++|.||.++.. .+....+.++|.+.|++.+-
T Consensus 56 ~~l~~--------------al~g~d~v~~~~~~~~~~~~~~~~~li~Aa~~agVk~~v 99 (233)
T PF05368_consen 56 ESLVA--------------ALKGVDAVFSVTPPSHPSELEQQKNLIDAAKAAGVKHFV 99 (233)
T ss_dssp HHHHH--------------HHTTCSEEEEESSCSCCCHHHHHHHHHHHHHHHT-SEEE
T ss_pred HHHHH--------------HHcCCceEEeecCcchhhhhhhhhhHHHhhhccccceEE
Confidence 44443 34799999999883 23456788999999987664
No 492
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=93.28 E-value=0.11 Score=45.38 Aligned_cols=34 Identities=38% Similarity=0.557 Sum_probs=27.8
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCCcc
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKV 120 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v 120 (231)
..|+|||+|..|+.+|..|++.|+. ++|+|....
T Consensus 2 ~dV~IvGaG~aGl~~A~~L~~~G~~-v~i~E~~~~ 35 (356)
T PF01494_consen 2 YDVAIVGAGPAGLAAALALARAGID-VTIIERRPD 35 (356)
T ss_dssp EEEEEE--SHHHHHHHHHHHHTTCE-EEEEESSSS
T ss_pred ceEEEECCCHHHHHHHHHHHhcccc-cccchhccc
Confidence 4799999999999999999999984 888886544
No 493
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=93.27 E-value=0.91 Score=40.81 Aligned_cols=33 Identities=24% Similarity=0.397 Sum_probs=28.3
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeC
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 186 g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~ 218 (368)
T TIGR02818 186 GDTVAVFGLGGIGLSVIQGARMAKASRIIAIDI 218 (368)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 678999999999999888887889878887764
No 494
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=93.25 E-value=0.51 Score=42.52 Aligned_cols=31 Identities=29% Similarity=0.498 Sum_probs=27.2
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEe
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYD 116 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD 116 (231)
+.+|+|+|+||+|...++.....| .+++-+|
T Consensus 167 G~~V~I~G~GGlGh~avQ~Aka~g-a~Via~~ 197 (339)
T COG1064 167 GKWVAVVGAGGLGHMAVQYAKAMG-AEVIAIT 197 (339)
T ss_pred CCEEEEECCcHHHHHHHHHHHHcC-CeEEEEe
Confidence 678999999999999888888899 7777777
No 495
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=93.24 E-value=0.68 Score=41.61 Aligned_cols=33 Identities=36% Similarity=0.475 Sum_probs=28.3
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeC
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
+.+|+|.|+|++|..++..+...|+.++..+|.
T Consensus 192 g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~ 224 (371)
T cd08281 192 GQSVAVVGLGGVGLSALLGAVAAGASQVVAVDL 224 (371)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcC
Confidence 578999999999999888888899988887763
No 496
>PRK11259 solA N-methyltryptophan oxidase; Provisional
Probab=93.22 E-value=0.12 Score=46.29 Aligned_cols=35 Identities=34% Similarity=0.558 Sum_probs=31.4
Q ss_pred cCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCcc
Q 026893 85 EFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDKV 120 (231)
Q Consensus 85 ~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~v 120 (231)
...|+|||.|-+|+.+|..|++.|. +++|+|.+..
T Consensus 3 ~~dv~IIGgGi~G~s~A~~L~~~g~-~V~lie~~~~ 37 (376)
T PRK11259 3 RYDVIVIGLGSMGSAAGYYLARRGL-RVLGLDRFMP 37 (376)
T ss_pred cccEEEECCCHHHHHHHHHHHHCCC-eEEEEecccC
Confidence 4579999999999999999999996 7999998764
No 497
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=93.21 E-value=0.12 Score=46.59 Aligned_cols=38 Identities=18% Similarity=0.327 Sum_probs=34.3
Q ss_pred HHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeCCc
Q 026893 82 RIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYDK 119 (231)
Q Consensus 82 kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D~ 119 (231)
.+.+++|+|||.|-+|..++++|...|+++|++.....
T Consensus 171 ~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~ 208 (338)
T PRK00676 171 KSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQ 208 (338)
T ss_pred CccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 47789999999999999999999999999999976553
No 498
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=93.17 E-value=0.13 Score=46.21 Aligned_cols=37 Identities=27% Similarity=0.328 Sum_probs=31.7
Q ss_pred HHHHhcCcEEEEecCchHHHHHHHHHHhcCceEEEEeC
Q 026893 80 YERIREFSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDY 117 (231)
Q Consensus 80 ~~kl~~~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~ 117 (231)
...|++++|.|||+|..|..++.+|..+|+ ++++.+.
T Consensus 12 ~~~L~gktIgIIG~GsmG~AlA~~L~~sG~-~Vvv~~r 48 (330)
T PRK05479 12 LSLIKGKKVAIIGYGSQGHAHALNLRDSGV-DVVVGLR 48 (330)
T ss_pred hhhhCCCEEEEEeeHHHHHHHHHHHHHCCC-EEEEEEC
Confidence 456888999999999999999999999998 5666553
No 499
>PRK08040 putative semialdehyde dehydrogenase; Provisional
Probab=93.16 E-value=0.95 Score=40.77 Aligned_cols=92 Identities=17% Similarity=0.286 Sum_probs=58.4
Q ss_pred hcCcEEEEec-CchHHHHHHHHHH--hcCceEEEEeCCccccccccccCCCcCccCCcHHHHHHHHHHhhCCCcEEEEEe
Q 026893 84 REFSVAIVGV-GGVGSVAAEMLTR--CGIGRLLLYDYDKVELANMNRLFFRPEQVGMTKTDAAVQTLADINPDVVLESFT 160 (231)
Q Consensus 84 ~~~~V~IvG~-GgvGs~ia~~La~--~Gv~~i~LiD~D~v~~~Nl~R~~~~~~dvG~~Ka~~~~~~l~~~np~v~v~~~~ 160 (231)
+..+|+|||+ |-+|.++++.|.. .++.++.++-.+.- .|++=. +. ..++.++
T Consensus 3 ~~~~vaIvGATG~vG~ellrlL~~~~hP~~~l~~laS~~s--------------aG~~~~------~~--~~~~~v~--- 57 (336)
T PRK08040 3 EGWNIALLGATGAVGEALLELLAERQFPVGELYALASEES--------------AGETLR------FG--GKSVTVQ--- 57 (336)
T ss_pred CCCEEEEEccCCHHHHHHHHHHhcCCCCceEEEEEEccCc--------------CCceEE------EC--CcceEEE---
Confidence 3568999995 8899999999998 68888888654321 222100 00 1122222
Q ss_pred ecccCccchHHHHhhhhccCCCCCCCCCCCcEEEEccCCHHHHHHHHHHHHHcCCcEEEeC
Q 026893 161 LNITTVQGFETFMSSLRNKSFRPSKEGSGVDLVLSCVDNYEARMAVNQACNELNQTWMESG 221 (231)
Q Consensus 161 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~DiVi~~~D~~~~r~~i~~~~~~~~~p~i~~g 221 (231)
.++. ..+.++|+||.|..+..++.+..++ .+.|+++||..
T Consensus 58 -~~~~-------------------~~~~~~Dvvf~a~p~~~s~~~~~~~-~~~g~~VIDlS 97 (336)
T PRK08040 58 -DAAE-------------------FDWSQAQLAFFVAGREASAAYAEEA-TNAGCLVIDSS 97 (336)
T ss_pred -eCch-------------------hhccCCCEEEECCCHHHHHHHHHHH-HHCCCEEEECC
Confidence 1111 1235799999999887665555554 55789888865
No 500
>COG1250 FadB 3-hydroxyacyl-CoA dehydrogenase [Lipid metabolism]
Probab=93.14 E-value=0.24 Score=44.04 Aligned_cols=32 Identities=28% Similarity=0.430 Sum_probs=28.5
Q ss_pred CcEEEEecCchHHHHHHHHHHhcCceEEEEeCC
Q 026893 86 FSVAIVGVGGVGSVAAEMLTRCGIGRLLLYDYD 118 (231)
Q Consensus 86 ~~V~IvG~GgvGs~ia~~La~~Gv~~i~LiD~D 118 (231)
++|.|||.|-.|+-||..++..| -.++|+|..
T Consensus 4 ~kv~ViGaG~MG~gIA~~~A~~G-~~V~l~D~~ 35 (307)
T COG1250 4 KKVAVIGAGVMGAGIAAVFALAG-YDVVLKDIS 35 (307)
T ss_pred cEEEEEcccchhHHHHHHHhhcC-CceEEEeCC
Confidence 58999999999999999999955 588999976
Done!