BLAST Results

Query Summary

Your job contains 1 sequence.

Parameters
Threshold: 0.001
Maximum number of alignments shown: 100
BLAST filter: on

Query Sequence

>026894
MMAKNLEATINVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVL
FVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQCSAGKEVAWNLL
SLFTVAAVLYLEISLMAFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYVFGFGFPL
FIDVDSTHRMKWGFWIIHELLLTAVYGFILFVHFSKWREKLPCEYIICSVY

High Scoring Gene Products

Symbol, full name Information P value
Cand2
AT3G05010
protein from Arabidopsis thaliana 2.1e-61
Cand8
AT5G27210
protein from Arabidopsis thaliana 2.4e-60
tpra-1 gene from Caenorhabditis elegans 8.5e-05

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Raw Blast Data

BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Query=  026894
        (231 letters)

Database:  go_20130330-seqdb.fasta
           368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

TAIR|locus:2114835 - symbol:Cand2 "AT3G05010" species:370...   628  2.1e-61   1
TAIR|locus:2181231 - symbol:Cand8 "AT5G27210" species:370...   618  2.4e-60   1
WB|WBGene00008366 - symbol:tpra-1 species:6239 "Caenorhab...   120  8.5e-05   1


>TAIR|locus:2114835 [details] [associations]
            symbol:Cand2 "AT3G05010" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0009507
            "chloroplast" evidence=ISM] [GO:0016020 "membrane" evidence=ISS]
            [GO:0002237 "response to molecule of bacterial origin"
            evidence=IEP] [GO:0010015 "root morphogenesis" evidence=IMP]
            EMBL:CP002686 UniGene:At.40742 UniGene:At.60289 GO:GO:0002237
            GO:GO:0010015 eggNOG:NOG284525 InterPro:IPR018781 Pfam:PF10160
            PANTHER:PTHR15876 EMBL:AY046040 IPI:IPI00531543 RefSeq:NP_566244.1
            IntAct:Q94AH1 EnsemblPlants:AT3G05010.1 GeneID:819662
            KEGG:ath:AT3G05010 TAIR:At3g05010 HOGENOM:HOG000240424
            InParanoid:Q94AH1 OMA:FFDADWE PhylomeDB:Q94AH1
            ProtClustDB:CLSN2686970 ArrayExpress:Q94AH1 Genevestigator:Q94AH1
            Uniprot:Q94AH1
        Length = 300

 Score = 628 (226.1 bits), Expect = 2.1e-61, P = 2.1e-61
 Identities = 115/210 (54%), Positives = 153/210 (72%)

Query:    23 LPPIAELPFPVKSIGGNES---------VRQCHGVLYDAALVVPTVLFVLYLVVHAKKNL 73
             L  IAE PF +  +  + +         V +CHG L++  LV+ ++LFV YL   AKK+L
Sbjct:     4 LSEIAESPFVISRLSPDSTATGGFIGGWVGKCHGFLHNTVLVLASILFVAYLAYEAKKSL 63

Query:    74 TKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQCSAGKEVAWNLLSLFTVAAVLYLEI 133
             +KL N RSYIMI+YY  LWL  +LNLAWC LQ W+C+ GKEV WNLL+LFT + +L+LE+
Sbjct:    64 SKLSNRRSYIMIAYYGFLWLVSLLNLAWCCLQAWECTPGKEVIWNLLTLFTTSGMLFLEV 123

Query:   134 SLMAFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYVFGFGFPLFIDVDS-THRMKW 192
             SL+AFL Q +YASG E L RTF+ISG+++G+D+LLK IY+FGFG PLFID +   H+ KW
Sbjct:   124 SLVAFLFQGNYASGAEALTRTFLISGLVIGLDLLLKAIYLFGFGVPLFIDNNEHIHKFKW 183

Query:   193 GFWIIHELLLTAVYGFILFVHFSKWREKLP 222
             G W+IH+LLL  +YG I F++ SKWRE+LP
Sbjct:   184 GLWVIHKLLLAGIYGMIFFMYNSKWRERLP 213


>TAIR|locus:2181231 [details] [associations]
            symbol:Cand8 "AT5G27210" species:3702 "Arabidopsis
            thaliana" [GO:0003674 "molecular_function" evidence=ND] [GO:0008150
            "biological_process" evidence=ND] [GO:0009507 "chloroplast"
            evidence=ISM] EMBL:CP002688 InterPro:IPR018781 Pfam:PF10160
            PANTHER:PTHR15876 IPI:IPI00520666 RefSeq:NP_198073.1
            UniGene:At.10290 EnsemblPlants:AT5G27210.1 GeneID:832779
            KEGG:ath:AT5G27210 OMA:HALYLPL Uniprot:F4K2U8
        Length = 297

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 116/207 (56%), Positives = 149/207 (71%)

Query:    23 LPPIAELPFPVKSIGGNES------VRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKL 76
             L  IAE PF +  +  N +      V +CHG L++  LV  ++ FV YL   AKK+L+KL
Sbjct:     4 LDEIAESPFLISPLNPNSTANGYRWVDKCHGFLHNTVLVAASLFFVAYLAYEAKKSLSKL 63

Query:    77 CNGRSYIMISYYALLWLACVLNLAWCSLQGWQCSAGKEVAWNLLSLFTVAAVLYLEISLM 136
              N RSYIMI+YY  LWL  +LNLAWC LQGW+C+ GKEV WNLL+LFT + +L+LE+SL+
Sbjct:    64 SNRRSYIMIAYYGCLWLVSLLNLAWCCLQGWECTPGKEVVWNLLTLFTTSGMLFLEVSLV 123

Query:   137 AFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYVFGFGFPLFIDVDSTHR-MKWGFW 195
             AFL Q +YASG E L RTF+ISG IV +D+LLK I++FGFG PLFID +   +  KWG W
Sbjct:   124 AFLFQGNYASGAEALTRTFLISGFIVALDLLLKAIFLFGFGVPLFIDNNENGKTFKWGLW 183

Query:   196 IIHELLLTAVYGFILFVHFSKWREKLP 222
             IIH+LLLT VYG +  ++ S+WREKLP
Sbjct:   184 IIHKLLLTGVYGMVFLMYNSRWREKLP 210


>WB|WBGene00008366 [details] [associations]
            symbol:tpra-1 species:6239 "Caenorhabditis elegans"
            [GO:0016021 "integral to membrane" evidence=IEA] GO:GO:0016021
            EMBL:Z68215 eggNOG:NOG284525 InterPro:IPR018781 Pfam:PF10160
            GeneTree:ENSGT00390000016807 EMBL:Z68160 PIR:T20292
            RefSeq:NP_001255357.1 EnsemblMetazoa:D1046.5a.1
            EnsemblMetazoa:D1046.5a.2 GeneID:259586 KEGG:cel:CELE_D1046.5
            UCSC:D1046.5 CTD:259586 WormBase:D1046.5a HOGENOM:HOG000154721
            InParanoid:Q18936 OMA:GSFLIYC NextBio:952178 ArrayExpress:Q18936
            Uniprot:Q18936
        Length = 458

 Score = 120 (47.3 bits), Expect = 8.5e-05, P = 8.5e-05
 Identities = 40/169 (23%), Positives = 81/169 (47%)

Query:    50 YDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQ-GWQ 108
             +DA ++VP +LF+L+L++     + KL  G S ++ ++  L++++ ++N+  C+      
Sbjct:    78 WDAVILVPNILFLLFLILKCGSVIRKLRTGNSPVLRAFTLLVYVSTLVNIIRCAYSMTLS 137

Query:   109 CSAGKE-----VAWNLLSLFTVAAVLY-LEISLMAFLLQESYASGLETLARTFIISGIIV 162
              + G E       W ++  F + A    L   L+ F   ++  S L  L  T ++S    
Sbjct:   138 MTDGLEQTVDQTLWIIIKFFYLTAEFCALTFGLL-FGHLDNGKSILIALLGTLLVSIPHT 196

Query:   163 GVDMLLKVIYVFGFGFPL-FIDVDSTHRMKWGFWIIHELLLTAVYGFIL 210
              V +++++  +     PL + D+ S       FW+    +L  VY FI+
Sbjct:   197 AVQVIIEMKIIDNSWLPLTYFDIQSDGGFL--FWVFSSAVLALVYFFIM 243


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.329   0.141   0.449    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      231       231   0.00084  113 3  11 22  0.44    32
                                                     32  0.42    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  609 (65 KB)
  Total size of DFA:  195 KB (2109 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  18.75u 0.08s 18.83t   Elapsed:  00:00:01
  Total cpu time:  18.75u 0.08s 18.83t   Elapsed:  00:00:01
  Start:  Sat May 11 09:49:44 2013   End:  Sat May 11 09:49:45 2013

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