Query 026894
Match_columns 231
No_of_seqs 37 out of 39
Neff 3.3
Searched_HMMs 46136
Date Fri Mar 29 14:12:47 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026894.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026894hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PF10160 Tmemb_40: Predicted m 100.0 4.2E-72 9.2E-77 499.9 19.9 187 40-226 2-191 (261)
2 KOG4536 Predicted membrane pro 100.0 5.2E-57 1.1E-61 409.6 18.7 186 39-226 31-227 (347)
3 KOG4536 Predicted membrane pro 76.0 2.6 5.7E-05 40.1 3.2 76 57-132 56-133 (347)
4 PLN00056 photosystem Q(B) prot 62.6 19 0.00041 34.8 5.8 91 9-109 79-169 (353)
5 PF00124 Photo_RC: Photosynthe 53.0 49 0.0011 30.8 6.6 81 9-109 42-122 (257)
6 PF10160 Tmemb_40: Predicted m 52.8 48 0.001 30.9 6.6 84 110-193 77-161 (261)
7 COG0598 CorA Mg2+ and Co2+ tra 49.7 2.1E+02 0.0045 26.2 10.3 98 113-217 223-321 (322)
8 KOG4193 G protein-coupled rece 48.4 50 0.0011 33.8 6.5 66 40-105 462-534 (610)
9 PF12273 RCR: Chitin synthesis 45.2 23 0.0005 28.4 3.0 18 67-84 18-35 (130)
10 TIGR01151 psbA photosystem II, 39.7 73 0.0016 31.0 5.8 88 12-109 82-169 (360)
11 PF03189 Otopetrin: Otopetrin; 34.5 2.9E+02 0.0062 27.1 9.0 130 40-175 230-368 (441)
12 PF13965 SID-1_RNA_chan: dsRNA 29.9 6.2E+02 0.013 25.9 13.1 141 45-211 274-414 (570)
13 PF09586 YfhO: Bacterial membr 29.1 2.2E+02 0.0048 28.8 7.6 88 47-138 143-231 (843)
14 COG1914 MntH Mn2+ and Fe2+ tra 26.9 3.9E+02 0.0085 26.2 8.5 126 87-226 47-189 (416)
15 PF12273 RCR: Chitin synthesis 25.5 77 0.0017 25.4 3.0 24 52-75 6-29 (130)
16 PRK09546 zntB zinc transporter 23.4 1.9E+02 0.0041 26.3 5.4 41 170-217 282-323 (324)
17 PF06814 Lung_7-TM_R: Lung sev 22.2 5.6E+02 0.012 22.9 8.1 87 48-138 184-280 (295)
18 TIGR00383 corA magnesium Mg(2+ 21.9 1.7E+02 0.0038 26.0 4.8 41 170-217 276-317 (318)
19 KOG3533 Inositol 1,4,5-trispho 21.8 7.5E+02 0.016 29.5 10.2 27 73-99 2238-2264(2706)
20 KOG3966 p53-mediated apoptosis 20.8 7.9E+02 0.017 24.0 9.3 111 81-207 138-290 (360)
21 PF03350 UPF0114: Uncharacteri 20.5 2.5E+02 0.0055 22.7 5.1 34 152-185 47-83 (124)
No 1
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=100.00 E-value=4.2e-72 Score=499.90 Aligned_cols=187 Identities=38% Similarity=0.671 Sum_probs=182.8
Q ss_pred cccccccceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhceeecCC-hhhHHH
Q 026894 40 ESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQCSAG-KEVAWN 118 (231)
Q Consensus 40 ~~~~~~~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~llwvv~llnl~rC~vsm~~~t~~-~~~awn 118 (231)
+|+++|||++||+++++||++|++||++|+|||++|||+||||||+|||+++|+++++|++||++|||||+|+ ++++||
T Consensus 2 ~~~~~~~v~~~d~~l~vPn~lFllfL~~~~~~s~~KL~~~~SpI~~tyY~llw~v~llnl~rc~vsm~~~~~~~~~~~d~ 81 (261)
T PF10160_consen 2 RWIGGSRVRIWDVVLLVPNLLFLLFLAWRLRKSRRKLRHTRSPIFITYYALLWVVALLNLARCFVSMWVCSPGKGGIADK 81 (261)
T ss_pred cccccCceEehHHHHHHHHHHHHHHHHHhchHHHHHHhcCCCccHHHHHHHHHHHHHHHHHHHHHHHHhccCccchhHHH
Confidence 6999999999999999999999999999999999999999999999999999999999999999999999985 499999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhheeeecc-cceeecCC-CCCCcceehhh
Q 026894 119 LLSLFTVAAVLYLEISLMAFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYVFGFG-FPLFIDVD-STHRMKWGFWI 196 (231)
Q Consensus 119 ILwL~tRFglL~lEvSVvvFll~g~~~s~~esL~Rtl~iS~lia~~d~llkaiy~f~~G-vplF~~~~-~~~hgkw~FW~ 196 (231)
++|+++|||||++|+||++||+||||.||+||||||+++|++|+++|++.|++|+|++| +|+|.+++ ..+||||+||+
T Consensus 82 ~lW~ilrfflL~lEvSvvvFgL~fghlds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d~~l~~~~~~~~~hgg~~fW~ 161 (261)
T PF10160_consen 82 VLWNILRFFLLSLEVSVVVFGLQFGHLDSRSSIKRTLLITGLISLADSLTQAILEFGFGDVPLFIENFDLFGHGGWGFWF 161 (261)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHheeecCcccccCCCCCcCCcCCeehHH
Confidence 99999999999999999999999999999999999999999999999999999999999 89998766 78899999999
Q ss_pred HHHHHHHHHHHHHHHhcccccccccCCCCc
Q 026894 197 IHELLLTAVYGFILFVHFSKWREKLPCEYI 226 (231)
Q Consensus 197 isslvf~~VY~~Il~LP~T~wReRLParpS 226 (231)
+||++|++||++|++||++|||+|||+|||
T Consensus 162 ~~s~~f~~vY~~I~~L~~~r~r~~LPar~S 191 (261)
T PF10160_consen 162 ISSLVFALVYGFILILTPLRWRDRLPARPS 191 (261)
T ss_pred HHHHHHHHHHHHHHHHHhccccccCCCCcc
Confidence 999999999999999999999999999997
No 2
>KOG4536 consensus Predicted membrane protein [Function unknown]
Probab=100.00 E-value=5.2e-57 Score=409.63 Aligned_cols=186 Identities=41% Similarity=0.712 Sum_probs=165.2
Q ss_pred ccccccccc-e---eehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhc-eeecCCh
Q 026894 39 NESVRQCHG-V---LYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQG-WQCSAGK 113 (231)
Q Consensus 39 ~~~~~~~~g-~---~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~llwvv~llnl~rC~vsm-~~~t~~~ 113 (231)
.-||.+||| + +||+++++||+||++||++|+|++++|||++|||||+|||++||+++++|++||++|| |.||||+
T Consensus 31 ~~~vyk~~G~frvrywd~vllipnilFl~fL~~k~~s~~~Klr~~~SpI~iafy~lv~vvsLvniarc~~smt~s~t~g~ 110 (347)
T KOG4536|consen 31 LLWVYKCHGTFRVRYWDTVLLIPNILFLAFLAYKAKSSLSKLRNRRSPIMIAFYGLVWVVSLVNIARCCLSMTWSCTPGK 110 (347)
T ss_pred eEEEEecCCcceehhhhHHHHHHHHHHHHHHHHhchhHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhceeeccCch
Confidence 459999999 7 9999999999999999999999999999999999999999999999999999999999 7779999
Q ss_pred hhHHHHHHHHHHHHHHHHHHHH----HHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhheeeecccceeecCCCCCC
Q 026894 114 EVAWNLLSLFTVAAVLYLEISL----MAFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYVFGFGFPLFIDVDSTHR 189 (231)
Q Consensus 114 ~~awnILwL~tRFglL~lEvSV----vvFll~g~~~s~~esL~Rtl~iS~lia~~d~llkaiy~f~~GvplF~~~~~~~h 189 (231)
|++||+||.++|||.++.|+|+ ++||.|||+.|+.||++||+++|+.++++|.++|++|.+|+|+|+|.|.+ .|
T Consensus 111 e~~dkvlW~i~~fF~ls~el~~~v~glaFg~~~n~~Si~~aL~~T~liS~~~~a~q~~le~~y~d~~~~pl~fdi~--~~ 188 (347)
T KOG4536|consen 111 EVADKVLWNILTFFTLSGELFLEVSGLAFGFQGNYASIAEALTRTFLISGAYSALQLLLEAIYLDGFGVPLFFDIN--EH 188 (347)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHhhHHHHHHHHHHheeeccccCceeeeec--cc
Confidence 9999999999998876655555 55566889999999999999999999999999999999999999987765 25
Q ss_pred cceehhhHHHHHHHHHHHHHHHhc--ccccccccCCCCc
Q 026894 190 MKWGFWIIHELLLTAVYGFILFVH--FSKWREKLPCEYI 226 (231)
Q Consensus 190 gkw~FW~isslvf~~VY~~Il~LP--~T~wReRLParpS 226 (231)
||.-||+.+|.++++||.+++++| .+|||||||+|||
T Consensus 189 gg~~fWl~ss~~l~Lvy~~~milp~~~~k~r~kLPsr~s 227 (347)
T KOG4536|consen 189 GGRFFWLWSSHKLLLVYSYGMILPMYNSKWREKLPSRPS 227 (347)
T ss_pred CcEEEehHHHHHHHHHHHHHheeeccchhhhhcCCCcch
Confidence 667777777777777777666665 5678889999997
No 3
>KOG4536 consensus Predicted membrane protein [Function unknown]
Probab=75.96 E-value=2.6 Score=40.13 Aligned_cols=76 Identities=17% Similarity=0.232 Sum_probs=42.8
Q ss_pred hHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHHHHh-hhceeec-CChhhHHHHHHHHHHHHHHHHH
Q 026894 57 PTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCS-LQGWQCS-AGKEVAWNLLSLFTVAAVLYLE 132 (231)
Q Consensus 57 Pn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~llwvv~llnl~rC~-vsm~~~t-~~~~~awnILwL~tRFglL~lE 132 (231)
=-++|+++=+-+.++-.+-=|+-==--+--.--++-++-+.--+=.. +|||-+. -.+++.|||+-+|+..+++++|
T Consensus 56 lFl~fL~~k~~s~~~Klr~~~SpI~iafy~lv~vvsLvniarc~~smt~s~t~g~e~~dkvlW~i~~fF~ls~el~~~ 133 (347)
T KOG4536|consen 56 LFLAFLAYKAKSSLSKLRNRRSPIMIAFYGLVWVVSLVNIARCCLSMTWSCTPGKEVADKVLWNILTFFTLSGELFLE 133 (347)
T ss_pred HHHHHHHHhchhHHHHhhcCCChhHHHHHHHHHHHHHHHHHHHHHhceeeccCchhhHHHHHHHHHHHHHHHHHHHHH
Confidence 34567777655444433322222111122222233333333333334 7788884 4789999999999999999864
No 4
>PLN00056 photosystem Q(B) protein; Provisional
Probab=62.61 E-value=19 Score=34.82 Aligned_cols=91 Identities=16% Similarity=0.100 Sum_probs=69.1
Q ss_pred eeeeeeccceeeecCCCcccCCCceeccccccccccccceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 026894 9 TINVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYY 88 (231)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY 88 (231)
++.+.+.+.++..++||+-| .....+|+++.. +|..+-+--.+-++.+.+-+...| |.-..|-+|-.+|=
T Consensus 79 ~~av~PP~~~yGL~~~PLwe------a~~~~ewl~~GG--~wqii~f~~~~s~~~W~~R~~e~a--r~LGMg~hia~AFs 148 (353)
T PLN00056 79 SGAIIPTSAAIGLHFYPIWE------AASVDEWLYNGG--PYELIVLHFLLGVACYMGREWELS--FRLGMRPWIAVAYS 148 (353)
T ss_pred eEEecCCchhhccccCCccc------cccchhhhhCCC--cHHHHHHHHHHHHHHHHHHHHHHH--HHhCCchhHhHHHH
Confidence 56778888899999999988 334567987643 688777666666666665555444 44567889999999
Q ss_pred HHHHHHHHHHHHHHhhhceee
Q 026894 89 ALLWLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 89 ~llwvv~llnl~rC~vsm~~~ 109 (231)
+-+|+...+.++|=+.|-.=+
T Consensus 149 aaI~a~~~l~lIrPilmGSWs 169 (353)
T PLN00056 149 APVAAATAVFLIYPIGQGSFS 169 (353)
T ss_pred HHHHHHHHhheeeeccccccc
Confidence 999999999999999876443
No 5
>PF00124 Photo_RC: Photosynthetic reaction centre protein; InterPro: IPR000484 The photosynthetic apparatus in non-oxygenic bacteria consists of light-harvesting (LH) protein-pigment complexes LH1 and LH2, which use carotenoid and bacteriochlorophyll as primary donors []. LH1 acts as the energy collection hub, temporarily storing it before its transfer to the photosynthetic reaction centre (RC) []. Electrons are transferred from the primary donor via an intermediate acceptor (bacteriopheophytin) to the primary acceptor (quinine Qa), and finally to the secondary acceptor (quinone Qb), resulting in the formation of ubiquinol QbH2. RC uses the excitation energy to shuffle electrons across the membrane, transferring them via ubiquinol to the cytochrome bc1 complex in order to establish a proton gradient across the membrane, which is used by ATP synthetase to form ATP [, , ]. The core complex is anchored in the cell membrane, consisting of one unit of RC surrounded by LH1; in some species there may be additional subunits []. RC consists of three subunits: L (light), M (medium), and H (heavy). Subunits L and M provide the scaffolding for the chromophore, while subunit H contains a cytoplasmic domain []. In Rhodopseudomonas viridis, there is also a non-membranous tetrahaem cytochrome (4Hcyt) subunit on the periplasmic surface. This entry describes the photosynthetic reaction centre L and M subunits, and the homologous D1 (PsbA) and D2 (PsbD) photosystem II (PSII) reaction centre proteins from cyanobacteria, algae and plants. The D1 and D2 proteins only show approximately 15% sequence homology with the L and M subunits, however the conserved amino acids correspond to the binding sites of the phytochemically active cofactors. As a result, the reaction centres (RCs) of purple photosynthetic bacteria and PSII display considerable structural similarity in terms of cofactor organisation. The D1 and D2 proteins occur as a heterodimer that form the reaction core of PSII, a multisubunit protein-pigment complex containing over forty different cofactors, which are anchored in the cell membrane in cyanobacteria, and in the thylakoid membrane in algae and plants. Upon absorption of light energy, the D1/D2 heterodimer undergoes charge separation, and the electrons are transferred from the primary donor (chlorophyll a) via pheophytin to the primary acceptor quinone Qa, then to the secondary acceptor Qb, which like the bacterial system, culminates in the production of ATP. However, PSII has an additional function over the bacterial system. At the oxidising side of PSII, a redox-active residue in the D1 protein reduces P680, the oxidised tyrosine then withdrawing electrons from a manganese cluster, which in turn withdraw electrons from water, leading to the splitting of water and the formation of molecular oxygen. PSII thus provides a source of electrons that can be used by photosystem I to produce the reducing power (NADPH) required to convert CO2 to glucose [, ].; GO: 0045156 electron transporter, transferring electrons within the cyclic electron transport pathway of photosynthesis activity, 0009772 photosynthetic electron transport in photosystem II, 0019684 photosynthesis, light reaction; PDB: 2GMR_L 3A0B_D 3ARC_d 3A0H_d 1IZL_J 2AXT_A 1S5L_A 3KZI_A 3PRQ_A 4FBY_G ....
Probab=52.95 E-value=49 Score=30.83 Aligned_cols=81 Identities=16% Similarity=0.264 Sum_probs=60.4
Q ss_pred eeeeeeccceeeecCCCcccCCCceeccccccccccccceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 026894 9 TINVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYY 88 (231)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY 88 (231)
++++...+.++..++||+.| |-+|-.+-+--.+-++.+.+-+-++| |--..+-||-.+|=
T Consensus 42 ~~al~PP~~~yGL~~~PL~e------------------GG~w~~~~f~~~~s~~~W~~R~~e~a--r~LGmg~hva~AFs 101 (257)
T PF00124_consen 42 WLALEPPPPEYGLSFPPLWE------------------GGWWQIIGFFLTISFLSWWLRQYERA--RKLGMGPHVAWAFS 101 (257)
T ss_dssp T-EBSSSSGGGTTSTSTGGG------------------THHHHHHHHHHHHHHHHHHHHHHHHH--HHTTSTSHHHHHHH
T ss_pred EEeccCCCHHHccceeeccC------------------CceEEehhHHHHHHHHHHHHHHHHhh--hHhcccchHhHHHH
Confidence 46677778888888999888 44566666655566666665555544 44578899999999
Q ss_pred HHHHHHHHHHHHHHhhhceee
Q 026894 89 ALLWLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 89 ~llwvv~llnl~rC~vsm~~~ 109 (231)
+-+|+-..+.++|=+.|-.=+
T Consensus 102 aaI~~~~~l~~irPi~mGsW~ 122 (257)
T PF00124_consen 102 AAIWAYLVLGFIRPILMGSWS 122 (257)
T ss_dssp HHHHHHHHHHTHHHHHHTSGG
T ss_pred HHHHHHHHHHhhccccccccc
Confidence 999999999999999987433
No 6
>PF10160 Tmemb_40: Predicted membrane protein; InterPro: IPR018781 This entry represents 280 amino acid region found in a group of proteins conserved from plants to humans. These are predicted to be membrane proteins, but apart from that their function is unknown.
Probab=52.78 E-value=48 Score=30.94 Aligned_cols=84 Identities=19% Similarity=0.098 Sum_probs=67.9
Q ss_pred cCChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhhee-eecccceeecCCCCC
Q 026894 110 SAGKEVAWNLLSLFTVAAVLYLEISLMAFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYV-FGFGFPLFIDVDSTH 188 (231)
Q Consensus 110 t~~~~~awnILwL~tRFglL~lEvSVvvFll~g~~~s~~esL~Rtl~iS~lia~~d~llkaiy~-f~~GvplF~~~~~~~ 188 (231)
.-.++++||++.++.=+-=++.=+-.+.|+-..+..|-+..+.-|-+++++.+..+.+++..+. .-.=.-.+...+++.
T Consensus 77 ~~~d~~lW~ilrfflL~lEvSvvvFgL~fghlds~~Si~r~l~iT~~is~~~s~~Q~ilef~~~d~~l~~~~~~~~~hgg 156 (261)
T PF10160_consen 77 GIADKVLWNILRFFLLSLEVSVVVFGLQFGHLDSRSSIKRTLLITGLISLADSLTQAILEFGFGDVPLFIENFDLFGHGG 156 (261)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHheeecCcccccCCCCCcCCcCC
Confidence 4478999999999999999999999999999999999999999999999999999999877666 222222344556566
Q ss_pred Cccee
Q 026894 189 RMKWG 193 (231)
Q Consensus 189 hgkw~ 193 (231)
++=|.
T Consensus 157 ~~fW~ 161 (261)
T PF10160_consen 157 WGFWF 161 (261)
T ss_pred eehHH
Confidence 66665
No 7
>COG0598 CorA Mg2+ and Co2+ transporters [Inorganic ion transport and metabolism]
Probab=49.68 E-value=2.1e+02 Score=26.21 Aligned_cols=98 Identities=17% Similarity=0.238 Sum_probs=55.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhheeeecc-cceeecCCCCCCcc
Q 026894 113 KEVAWNLLSLFTVAAVLYLEISLMAFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYVFGFG-FPLFIDVDSTHRMK 191 (231)
Q Consensus 113 ~~~awnILwL~tRFglL~lEvSVvvFll~g~~~s~~esL~Rtl~iS~lia~~d~llkaiy~f~~G-vplF~~~~~~~hgk 191 (231)
+++.+.+..++.+--.+.=.++.+.=...+-.-.-...+.++|.+-+.|-..=+++-.+|--+|+ .|+. +.+
T Consensus 223 ~dv~~~~~~~~~~~~~~~~~l~~l~d~~~s~is~~~N~imk~LTi~s~iflPpTlIagiyGMNf~~mPel-------~~~ 295 (322)
T COG0598 223 RDVLDHLTQLIEMLEALRERLSSLLDAYLSLINNNQNEIMKILTIVSTIFLPPTLITGFYGMNFKGMPEL-------DWP 295 (322)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHcccccCCCCCcCC-------CCc
Confidence 45566666666555444433333221111111122335555555555544444444488988887 4755 678
Q ss_pred eehhhHHHHHHHHHHHHHHHhccccc
Q 026894 192 WGFWIIHELLLTAVYGFILFVHFSKW 217 (231)
Q Consensus 192 w~FW~isslvf~~VY~~Il~LP~T~w 217 (231)
||||++-.+...+.=+....+-+.+|
T Consensus 296 ~Gy~~~l~~m~~~~~~~~~~frrk~W 321 (322)
T COG0598 296 YGYPIALILMLLLALLLYLYFRRKGW 321 (322)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHhcCc
Confidence 89998887777776666666665555
No 8
>KOG4193 consensus G protein-coupled receptors [Signal transduction mechanisms]
Probab=48.40 E-value=50 Score=33.79 Aligned_cols=66 Identities=15% Similarity=0.181 Sum_probs=55.9
Q ss_pred cccccccceeeh-----hHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHH--HHHHHHHHHHHHHHHHhhh
Q 026894 40 ESVRQCHGVLYD-----AALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMIS--YYALLWLACVLNLAWCSLQ 105 (231)
Q Consensus 40 ~~~~~~~g~~wD-----v~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~t--yY~llwvv~llnl~rC~vs 105 (231)
-|+....+++|- .++++-|+.+++--++|..+...++++..++.... +-..+-+..++++.|++-=
T Consensus 462 CWl~~~~~~~~~F~GPv~~ii~~Ni~~Fv~t~~~l~~~~~~~~~~~~~~~~~~~~~~~l~L~~lLGlTW~fgi 534 (610)
T KOG4193|consen 462 CWLDTQNGFIWSFLGPVTLIILVNIVMFVVTLKKLLRRLSKLQPIASKLENISLIRSALALLFLLGLTWIFGI 534 (610)
T ss_pred eEEecCCceEEEEehHHHHHHHHHHHHHHHHHHHHhhcccccCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 399999999987 67888999999999999999999999998888766 7777777778888887653
No 9
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=45.21 E-value=23 Score=28.41 Aligned_cols=18 Identities=17% Similarity=0.050 Sum_probs=9.7
Q ss_pred HhhhhhhhhhhcCCchhh
Q 026894 67 VHAKKNLTKLCNGRSYIM 84 (231)
Q Consensus 67 ~r~~~s~~KL~~trSpIf 84 (231)
.=+.+++||.|.+.-|+.
T Consensus 18 ~~~~~~rRR~r~G~~P~~ 35 (130)
T PF12273_consen 18 LFYCHNRRRRRRGLQPIY 35 (130)
T ss_pred HHHHHHHHHhhcCCCCcC
Confidence 333344555555777764
No 10
>TIGR01151 psbA photosystem II, DI subunit (also called Q(B)). This model describes the Photosystem II, DI subunit (also called Q(B)) in bacterial and its equivalents in chloroplast of algae and higher plants. Photosystem II is many ways functionally equivalent to bacterial reaction center. At the core of Photosystem II are several light harvesting cofactors including plastoquinones, pheophytins, phyloquinones etc. These cofactors are intimately associated with the polypeptides, which principally including subunits DI, DII, Cyt.b, Cyt.f and iron-sulphur protein. Together they participate in the electron transfer reactions that lead to the net production of the reducting equivalents in the form of NADPH, which are used for reduction of CO2 to carbohydrates(C6H1206). Phosystem II operates during oxygenic photosynthesis and principal electron donor is H2O. Although no structural data is presently available, a huge body of literature exits that describes function using a variety of biochemi
Probab=39.72 E-value=73 Score=31.04 Aligned_cols=88 Identities=18% Similarity=0.104 Sum_probs=63.7
Q ss_pred eeeccceeeecCCCcccCCCceeccccccccccccceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHH
Q 026894 12 VTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALL 91 (231)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~ll 91 (231)
+.+.+.++..++||+.|- ....+|+++.. +|..+-+--.+-++.+.+-+-.. .|--..|-+|-.+|=+-+
T Consensus 82 v~PP~~~yGL~~~PLwEa------~~~~ewL~~GG--~wqii~f~~~~sv~~W~~R~~e~--Ar~LGMg~hia~AFsaaI 151 (360)
T TIGR01151 82 VVPSSNAIGLHFYPIWEA------ASLDEWLYNGG--PYQLIVFHFLLGVACYMGREWEL--SYRLGMRPWICVAYSAPV 151 (360)
T ss_pred ecCCchhhccccCccccc------ccchhhhhcCC--CHHHHHHHHHHHHHHHHHHHHHH--HHHhCCchhHhHHHHHHH
Confidence 445577888999999861 23567987643 68777665555555555544443 445578899999999999
Q ss_pred HHHHHHHHHHHhhhceee
Q 026894 92 WLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 92 wvv~llnl~rC~vsm~~~ 109 (231)
|+...+.++|=+.|-.=+
T Consensus 152 ~a~~~l~lIrPilmGSWs 169 (360)
T TIGR01151 152 AAATAVFLIYPIGQGSFS 169 (360)
T ss_pred HHHHHhheeeeccccccc
Confidence 999999999999876443
No 11
>PF03189 Otopetrin: Otopetrin; InterPro: IPR004878 The otopetrins are a group of proteins that are restricted to the metazoa. The structure of otopetrin-1 (Q80VM9 from SWISSPROT) shows it to have 12 transmembrane domains, with three conserved sub-domains (OD-1 to OD-III) []. Otopetrins modulate calcium homeostasis and influx of calcium in response to extracellular ATP. The otopetrins are required for normal formation of otoconia/otoliths in the inner ear. Otoconia are minute biomineral particles embedded in a gelatinous membrane that overlies the sensory epithelium in the inner ear. Gravity and acceleration cause the octoconia to deflect the stereocilia of sensory hair cells. Otoconia are required for normal processing of information regarding spatial orientation and acceleration.
Probab=34.51 E-value=2.9e+02 Score=27.05 Aligned_cols=130 Identities=9% Similarity=0.149 Sum_probs=80.0
Q ss_pred cccccccce----eehhHHHhhHH-HHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhceee----c
Q 026894 40 ESVRQCHGV----LYDAALVVPTV-LFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQC----S 110 (231)
Q Consensus 40 ~~~~~~~g~----~wDv~LlvPn~-LFllFL~~r~~~s~~KL~~trSpIf~tyY~llwvv~llnl~rC~vsm~~~----t 110 (231)
.+-..|||. .--+++++-.+ -+.+|.+..-++. .+..--.++-.+...+..++++-.+-|..||-.- .
T Consensus 230 ~~~vdc~~a~~Glf~Gil~lv~tii~lilf~v~~~~~~---~~~~A~~~~~i~~~~l~~l~~~a~i~g~~~~r~l~~~~~ 306 (441)
T PF03189_consen 230 HISVDCSGASKGLFLGILVLVATIIVLILFFVLINDPE---YSELAILLVYIFELVLYSLSILAVIIGIYRMRKLKFSSK 306 (441)
T ss_pred ceeEEeCCcchhHHHHHHHHHHHHHHhehhhheecCCc---hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc
Confidence 344667654 44455444444 3445555553322 2222234555666777888888888888877552 2
Q ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhheeee
Q 026894 111 AGKEVAWNLLSLFTVAAVLYLEISLMAFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYVFG 175 (231)
Q Consensus 111 ~~~~~awnILwL~tRFglL~lEvSVvvFll~g~~~s~~esL~Rtl~iS~lia~~d~llkaiy~f~ 175 (231)
+-++..|++|=+..-+|....-+.-++=...+ ...+......+++.++..++..+|..+++-
T Consensus 307 ~~~~~LD~iLL~va~~G~~ly~~fsIia~~~~---~~~~~~~~l~l~~~ll~iiQv~~QtlFIl~ 368 (441)
T PF03189_consen 307 NPGRSLDVILLVVAAFGEFLYSYFSIIAGIFT---DPHGSLNWLNLIYSLLRIIQVTLQTLFILD 368 (441)
T ss_pred CccccHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCCCCcChHHHHHHHHHHHHHHHHHHHHHH
Confidence 34688999999988888776655333322222 222224556688889999999999888776
No 12
>PF13965 SID-1_RNA_chan: dsRNA-gated channel SID-1
Probab=29.90 E-value=6.2e+02 Score=25.90 Aligned_cols=141 Identities=13% Similarity=0.127 Sum_probs=86.2
Q ss_pred ccceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhceeecCChhhHHHHHHHHH
Q 026894 45 CHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQCSAGKEVAWNLLSLFT 124 (231)
Q Consensus 45 ~~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~llwvv~llnl~rC~vsm~~~t~~~~~awnILwL~t 124 (231)
.|.|+=|+-.++==++|++...-|-+..++.-..|=.+=...||++......-++.+++.+. | |++. ---|=
T Consensus 274 FN~v~Sn~gy~~lG~lfliiv~~r~~~~~~~~~~gi~~~~~~~~~~g~~li~egi~sa~yh~--C-Pn~~-----~fqfd 345 (570)
T PF13965_consen 274 FNNVFSNIGYVLLGLLFLIIVFRRKIFHRQPTSYGIPQHYGLFYAMGLALIMEGILSACYHI--C-PNRS-----NFQFD 345 (570)
T ss_pred hhhhHhhHHHHHHHHHHHHHHHHhhhhccccccCCCCccchhHHHHHHHHHHHHHHHHHhhc--C-cCch-----hhHHH
Confidence 34556666666666677666655554444544455555688999999999999999999987 5 4322 12255
Q ss_pred HHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHhhheeeecccceeecCCCCCCcceehhhHHHHHHHH
Q 026894 125 VAAVLYLEISLMAFLLQESYASGLETLARTFIISGIIVGVDMLLKVIYVFGFGFPLFIDVDSTHRMKWGFWIIHELLLTA 204 (231)
Q Consensus 125 RFglL~lEvSVvvFll~g~~~s~~esL~Rtl~iS~lia~~d~llkaiy~f~~GvplF~~~~~~~hgkw~FW~isslvf~~ 204 (231)
+.+|..+-++.++=+.|-.|-+.-.+=-.++++-+++.. . .-.|+- .++..||.+-+.+..+
T Consensus 346 t~fmyvi~~L~~lkiyq~RH~di~a~a~~~f~~~av~i~-------~--~~~gv~---------~~~~~f~iiF~ii~i~ 407 (570)
T PF13965_consen 346 TSFMYVIAGLCMLKIYQKRHPDINASAYAAFAVFAVVIF-------L--GLIGVL---------EKSSIFWIIFSIIHIL 407 (570)
T ss_pred HHHHHHHHHHHHHHHHHhhCCCCchhHHHHHHHHHHHHH-------H--Hhhhhe---------eccceehhHHHHHHHH
Confidence 667777777777778899986642322333444444331 1 111332 2345889876666655
Q ss_pred HHHHHHH
Q 026894 205 VYGFILF 211 (231)
Q Consensus 205 VY~~Il~ 211 (231)
+-+.+.+
T Consensus 408 ~~~~ls~ 414 (570)
T PF13965_consen 408 SCFFLSL 414 (570)
T ss_pred HHHHHHh
Confidence 5555444
No 13
>PF09586 YfhO: Bacterial membrane protein YfhO; InterPro: IPR018580 The yfhO gene is transcribed in Difco sporulation medium and the transcription is affected by the YvrGHb two-component system []. Some members of this family have been annotated as putative ABC transporter permease proteins.
Probab=29.12 E-value=2.2e+02 Score=28.84 Aligned_cols=88 Identities=13% Similarity=0.280 Sum_probs=48.3
Q ss_pred ceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCc-hhhHHHHHHHHHHHHHHHHHHhhhceeecCChhhHHHHHHHHHH
Q 026894 47 GVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRS-YIMISYYALLWLACVLNLAWCSLQGWQCSAGKEVAWNLLSLFTV 125 (231)
Q Consensus 47 g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trS-pIf~tyY~llwvv~llnl~rC~vsm~~~t~~~~~awnILwL~tR 125 (231)
=|+-|.++.+|-++.-+=-+.|-||... +--.=. -++.-|| +.+..|+.-++..++... - ......++-++-+.-
T Consensus 143 ~~fld~~i~lPL~llgie~~~~~~k~~~-~~~~~~l~~i~nfY-f~ym~~if~~iY~~~r~~-~-~~~k~~~~~~~~~~~ 218 (843)
T PF09586_consen 143 IMFLDAMILLPLLLLGIERLLKEKKWWL-FIISLALALISNFY-FAYMICIFLVIYFLIRYF-F-KNWKNFFKKILRFIG 218 (843)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCcch-hHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHH-H-HHHHHHHHHHHHHHH
Confidence 3568999999988766554444333211 100000 0223333 567777777777777665 1 222333444555555
Q ss_pred HHHHHHHHHHHHH
Q 026894 126 AAVLYLEISLMAF 138 (231)
Q Consensus 126 FglL~lEvSVvvF 138 (231)
...+.+=+|.+++
T Consensus 219 ~~ilg~~lsa~~l 231 (843)
T PF09586_consen 219 SSILGVGLSAFLL 231 (843)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666776666
No 14
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=26.88 E-value=3.9e+02 Score=26.19 Aligned_cols=126 Identities=22% Similarity=0.265 Sum_probs=80.4
Q ss_pred HHHHHHHHHHHHHHHHhhhceee-----c--C-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHH----HH
Q 026894 87 YYALLWLACVLNLAWCSLQGWQC-----S--A-GKEVAWNLLSLFTVAAVLYLEISLMAFLLQESYASGLETLA----RT 154 (231)
Q Consensus 87 yY~llwvv~llnl~rC~vsm~~~-----t--~-~~~~awnILwL~tRFglL~lEvSVvvFll~g~~~s~~esL~----Rt 154 (231)
=|.++|++-+.|+.=+.+|.-.. | . ++...++..|-+..+..+.+|+--+++-+. +..+..-++. -.
T Consensus 47 Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y~~~~~~~~~~~~~i~~~at~ia-e~~G~aial~ll~~ip 125 (416)
T COG1914 47 GYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERYLPGLGILLWILAEIAGIATDIA-EVAGIAIALNLLFGIP 125 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHccchHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCh
Confidence 38899999999999999997543 1 1 457788889999999999999999999442 2333333333 34
Q ss_pred HHHHHHHHHHHHHHhhheeeecccceeecCCCCCCcceehhhHHHHHHHHHHHHHHHhcccccccc-----cCCCCc
Q 026894 155 FIISGIIVGVDMLLKVIYVFGFGFPLFIDVDSTHRMKWGFWIIHELLLTAVYGFILFVHFSKWREK-----LPCEYI 226 (231)
Q Consensus 155 l~iS~lia~~d~llkaiy~f~~GvplF~~~~~~~hgkw~FW~isslvf~~VY~~Il~LP~T~wReR-----LParpS 226 (231)
+....++.++|.++=...- ++.. --+...++..-.+.+-+|-+...-|. |.|. +|+.|.
T Consensus 126 ~~~g~iItav~~~iil~~~-~~r~----------~E~~v~~l~~~~~i~~~~~~~~~~p~--~~~~~~~~f~P~~~~ 189 (416)
T COG1914 126 LIIGAVITAVDVLIILLLK-GYRL----------LERVVLILGLVLVILFVYVAFVAPPP--WGEVAKGDFLPSSPW 189 (416)
T ss_pred HHHHHHHHHHHHHHHHHhc-chHH----------HHHHHHHHHHHHHHHHHHHHhhcCCC--HHHHhccCCCCCCcc
Confidence 4566677777776622111 2211 13455555555555666666666665 6543 466554
No 15
>PF12273 RCR: Chitin synthesis regulation, resistance to Congo red; InterPro: IPR020999 RCR proteins are ER membrane proteins that regulate chitin deposition in fungal cell walls. Although chitin, a linear polymer of beta-1,4-linked N-acetylglucosamine, constitutes only 2% of the cell wall it plays a vital role in the overall protection of the cell wall against stress, noxious chemicals and osmotic pressure changes. Congo red is a cell wall-disrupting benzidine-type dye extensively used in many cell wall mutant studies that specifically targets chitin in yeast cells and inhibits growth. RCR proteins render the yeasts resistant to Congo red by diminishing the content of chitin in the cell wall []. RCR proteins are probably regulating chitin synthase III interact directly with ubiquitin ligase Rsp5, and the VPEY motif is necessary for this, via interaction with the WW domains of Rsp5 [].
Probab=25.51 E-value=77 Score=25.41 Aligned_cols=24 Identities=21% Similarity=0.553 Sum_probs=13.3
Q ss_pred hHHHhhHHHHHHHHHHhhhhhhhh
Q 026894 52 AALVVPTVLFVLYLVVHAKKNLTK 75 (231)
Q Consensus 52 v~LlvPn~LFllFL~~r~~~s~~K 75 (231)
+++++..+++++....+.||-++|
T Consensus 6 ~iii~~i~l~~~~~~~~~rRR~r~ 29 (130)
T PF12273_consen 6 AIIIVAILLFLFLFYCHNRRRRRR 29 (130)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc
Confidence 345566666665555555555444
No 16
>PRK09546 zntB zinc transporter; Reviewed
Probab=23.42 E-value=1.9e+02 Score=26.26 Aligned_cols=41 Identities=27% Similarity=0.494 Sum_probs=25.9
Q ss_pred hheeeecc-cceeecCCCCCCcceehhhHHHHHHHHHHHHHHHhccccc
Q 026894 170 VIYVFGFG-FPLFIDVDSTHRMKWGFWIIHELLLTAVYGFILFVHFSKW 217 (231)
Q Consensus 170 aiy~f~~G-vplF~~~~~~~hgkw~FW~isslvf~~VY~~Il~LP~T~w 217 (231)
-+|--+|+ .|+ .|.+++||.+--+...++-+++..+-+.+|
T Consensus 282 GiyGMNf~~mPe-------l~~~~gy~~~l~im~~i~~~~~~~fkrk~W 323 (324)
T PRK09546 282 GLFGVNLGGIPG-------GGWPFGFSIFCLLLVVLIGGVAWWLKRSKW 323 (324)
T ss_pred hhhccccCCCCC-------cCCcchHHHHHHHHHHHHHHHHHHHHhccc
Confidence 56777774 664 366788997766666665555555554444
No 17
>PF06814 Lung_7-TM_R: Lung seven transmembrane receptor; InterPro: IPR009637 This family represents a conserved region with eukaryotic lung seven transmembrane receptors and related proteins.; GO: 0016021 integral to membrane
Probab=22.15 E-value=5.6e+02 Score=22.89 Aligned_cols=87 Identities=15% Similarity=0.264 Sum_probs=51.6
Q ss_pred eeehhHHHhhHHHH-HHHH---HHhhhhhhhhhhcCCch----hhHHHHHHHHHHHHHHHHHHhhh-ceee-cCChhhHH
Q 026894 48 VLYDAALVVPTVLF-VLYL---VVHAKKNLTKLCNGRSY----IMISYYALLWLACVLNLAWCSLQ-GWQC-SAGKEVAW 117 (231)
Q Consensus 48 ~~wDv~LlvPn~LF-llFL---~~r~~~s~~KL~~trSp----If~tyY~llwvv~llnl~rC~vs-m~~~-t~~~~~aw 117 (231)
.+.++..++|-... +.|. ...+++..++|+..|.. .+.-||..+-.-.++..+.-.++ +... +...+.-|
T Consensus 184 ~~~~~~~~~~l~~~~~~~~~wi~~sL~~t~~~lk~~~q~~KL~lyr~f~~~li~~v~~~~i~~~~~~~~~~~~~~~~~~W 263 (295)
T PF06814_consen 184 SWNFIFFLLPLCILDLFFIVWIFRSLSKTIRDLKARRQTAKLSLYRRFYNVLIAYVVFSRIFVVLSSIIFNTSDSIEKPW 263 (295)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccH
Confidence 34667777777332 2333 33344455555555443 57778888777777777766666 3332 22456679
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 026894 118 NLLSLFTVAAVLYLEISLMAF 138 (231)
Q Consensus 118 nILwL~tRFglL~lEvSVvvF 138 (231)
+..|+.. ...|+.-.+|
T Consensus 264 ~~~W~~~----~~~~~l~~~~ 280 (295)
T PF06814_consen 264 KYQWFIE----AFWELLYFVF 280 (295)
T ss_pred HHHhHHH----HHHHHHHHHH
Confidence 9999985 3346555444
No 18
>TIGR00383 corA magnesium Mg(2+) and cobalt Co(2+) transport protein (corA). The article in Microb Comp Genomics 1998;3(3):151-69 (Medline:98448512) discusses this family and suggests that some members may have functions other than Mg2+ transport.
Probab=21.86 E-value=1.7e+02 Score=25.96 Aligned_cols=41 Identities=20% Similarity=0.484 Sum_probs=24.9
Q ss_pred hheeeecc-cceeecCCCCCCcceehhhHHHHHHHHHHHHHHHhccccc
Q 026894 170 VIYVFGFG-FPLFIDVDSTHRMKWGFWIIHELLLTAVYGFILFVHFSKW 217 (231)
Q Consensus 170 aiy~f~~G-vplF~~~~~~~hgkw~FW~isslvf~~VY~~Il~LP~T~w 217 (231)
.+|--+|+ .|+- |.+|+||.+-.+....+=+.+..+-+-+|
T Consensus 276 GiyGMNf~~mP~l-------~~~~gy~~~l~~m~~i~~~~~~~fkrk~W 317 (318)
T TIGR00383 276 GIYGMNFKFMPEL-------NWKYGYPAVLIVMAVIALGPLIYFRRKGW 317 (318)
T ss_pred HHHhCCcccCccc-------cchhHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 67777764 5643 67788987766665555444444444333
No 19
>KOG3533 consensus Inositol 1,4,5-trisphosphate receptor [Signal transduction mechanisms]
Probab=21.80 E-value=7.5e+02 Score=29.47 Aligned_cols=27 Identities=22% Similarity=0.208 Sum_probs=18.0
Q ss_pred hhhhhcCCchhhHHHHHHHHHHHHHHH
Q 026894 73 LTKLCNGRSYIMISYYALLWLACVLNL 99 (231)
Q Consensus 73 ~~KL~~trSpIf~tyY~llwvv~llnl 99 (231)
.+|||+..=---.+.+.-+|..-..|+
T Consensus 2238 Qrklr~~p~l~W~s~~mslW~sisFn~ 2264 (2706)
T KOG3533|consen 2238 QRKLRDRPWLSWCARRMSLWTSISFNL 2264 (2706)
T ss_pred HHHhhcCcHHHHHHhhhhHhhhhhhhH
Confidence 467877655556788888886554443
No 20
>KOG3966 consensus p53-mediated apoptosis protein EI24/PIG8 [Signal transduction mechanisms; Defense mechanisms]
Probab=20.84 E-value=7.9e+02 Score=23.98 Aligned_cols=111 Identities=19% Similarity=0.343 Sum_probs=61.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhceeec----------------C--ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q 026894 81 SYIMISYYALLWLACVLNLAWCSLQGWQCS----------------A--GKEVAWNLLSLFTVAAVLYLEISLMAFLLQE 142 (231)
Q Consensus 81 SpIf~tyY~llwvv~llnl~rC~vsm~~~t----------------~--~~~~awnILwL~tRFglL~lEvSVvvFll~g 142 (231)
-||....++.+|+.-+.-+-+-+-+.|-+. | +|-+||-+.+.... +.|+.||
T Consensus 138 ~~~ls~lfg~iwVlPiF~lSkiV~alWF~DIa~aa~rv~k~~P~p~p~~Sk~~Ad~Lfs~l~Q----------~lFLiQg 207 (360)
T KOG3966|consen 138 HPILSLLFGYIWVLPIFFLSKIVQALWFSDIAGAAMRVLKLPPPPVPPFSKMLADTLFSALHQ----------ILFLIQG 207 (360)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHHHHHH----------HHHHHHH
Confidence 378888999999988766666555555421 1 46677776665543 3445555
Q ss_pred --------cccchHHHHHHHHHHHHHHHH--------------HHHHH-hhheeeecccceeecCC-CCCCcceehhhHH
Q 026894 143 --------SYASGLETLARTFIISGIIVG--------------VDMLL-KVIYVFGFGFPLFIDVD-STHRMKWGFWIIH 198 (231)
Q Consensus 143 --------~~~s~~esL~Rtl~iS~lia~--------------~d~ll-kaiy~f~~GvplF~~~~-~~~hgkw~FW~is 198 (231)
++.+..-...+.-+.-++... .|.+= .-=|-||||+|+-.-.+ .+. -+++
T Consensus 208 Mlv~l~Pi~lVg~~i~~lHm~LLySlYcFeY~wfn~g~e~hrRl~~iE~nWPYffGFG~PLa~lt~~sSs------~ivs 281 (360)
T KOG3966|consen 208 MLVQLLPIPLVGPVIVYLHMALLYSLYCFEYFWFNYGLEFHRRLDIIESNWPYFFGFGTPLALLTSISSS------MIVS 281 (360)
T ss_pred HHHhhcChhhcchHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHhcCchhccCCcHHHHHHhhhhh------HHHH
Confidence 333333333322222222111 12211 24588999999854444 333 4788
Q ss_pred HHHHHHHHH
Q 026894 199 ELLLTAVYG 207 (231)
Q Consensus 199 slvf~~VY~ 207 (231)
||+|++.+=
T Consensus 282 sciFsilFP 290 (360)
T KOG3966|consen 282 SCIFSILFP 290 (360)
T ss_pred HHHHHHHHH
Confidence 888887764
No 21
>PF03350 UPF0114: Uncharacterized protein family, UPF0114; InterPro: IPR005134 This conserved hypothetical protein family with four predicted transmembrane regions is found in Escherichia coli, Haemophilus influenzae, and Helicobacter pylori 26695, among completed genomes.
Probab=20.50 E-value=2.5e+02 Score=22.66 Aligned_cols=34 Identities=35% Similarity=0.647 Sum_probs=23.6
Q ss_pred HHHHHHHHHHHHHHHHH--hhheeeeccc-ceeecCC
Q 026894 152 ARTFIISGIIVGVDMLL--KVIYVFGFGF-PLFIDVD 185 (231)
Q Consensus 152 ~Rtl~iS~lia~~d~ll--kaiy~f~~Gv-plF~~~~ 185 (231)
.+.-.+.+++.++|..+ -..++|++|. .+|+++.
T Consensus 47 ~~~~~i~~vl~~vD~~Lia~vllI~~~g~YelFIs~~ 83 (124)
T PF03350_consen 47 DEKDLILGVLELVDLFLIANVLLIFAFGLYELFISKL 83 (124)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHcCeeeeEecc
Confidence 33445677888888766 4667788876 7787765
Done!