Query 026894
Match_columns 231
No_of_seqs 37 out of 39
Neff 3.3
Searched_HMMs 29240
Date Tue Mar 26 00:51:20 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026894.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026894hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3arc_A Photosystem Q(B) protei 46.6 36 0.0012 31.7 6.2 91 9-109 79-169 (344)
2 1eys_L Photosynthetic reaction 42.3 51 0.0017 29.9 6.3 81 9-109 71-151 (280)
3 2k9p_A Pheromone alpha factor 41.7 32 0.0011 25.6 4.2 25 78-106 45-69 (80)
4 2iub_A CORA, divalent cation t 31.1 50 0.0017 29.1 4.5 61 150-217 301-362 (363)
5 2wjn_M Reaction center protein 29.5 1.2E+02 0.0039 28.1 6.6 80 10-109 92-171 (324)
6 4ev6_A Magnesium transport pro 27.4 2.9E+02 0.0098 23.9 8.6 61 150-217 277-338 (339)
7 2wjn_L Reaction center protein 24.4 1.8E+02 0.006 26.3 6.7 62 46-109 83-144 (274)
8 1eys_M Photosynthetic reaction 23.4 1.6E+02 0.0056 27.1 6.4 62 46-109 110-171 (324)
9 1rzh_L Reaction center protein 23.2 1.9E+02 0.0063 26.3 6.7 80 10-109 64-143 (281)
10 3arc_K Photosystem II reaction 18.3 83 0.0028 20.7 2.4 26 49-74 12-37 (37)
No 1
>3arc_A Photosystem Q(B) protein; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1w5c_A* 3bz1_A* 1s5l_A* 2axt_A* 3bz2_A* 3kzi_A* 3prq_A* 3prr_A* 1izl_A* 3a0b_A* 3a0h_A*
Probab=46.61 E-value=36 Score=31.66 Aligned_cols=91 Identities=20% Similarity=0.085 Sum_probs=69.0
Q ss_pred eeeeeeccceeeecCCCcccCCCceeccccccccccccceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 026894 9 TINVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYY 88 (231)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY 88 (231)
++.+.+.+.++..++||+.|-- ...+|+++. =+|-.+.+--.+-++.+++-+...| |--..|-||-.+|=
T Consensus 79 ~lav~PP~~~yGL~~~PLwe~~------~~~~wL~~G--G~w~~i~~~~~~~v~~w~~R~~e~a--r~LGmg~hia~AFs 148 (344)
T 3arc_A 79 TGAVVPSSNAIGLHFYPIWEAA------SLDEWLYNG--GPYQLIIFHFLLGASCYMGRQWELS--YRLGMRPWICVAYS 148 (344)
T ss_dssp TCEECCCCTTTTTCCCCGGGSS------SHHHHHHTT--HHHHHHHHHHHHHHHHHHHHHHHHH--HHTTCCSTHHHHHH
T ss_pred eEeeCCCChhhccccCCccccc------hhhhhhhCC--CcHHHHHHHHHHHHHHHHHHHHHHH--HHhCCchHHHHHHH
Confidence 4567777788888889887632 456798764 3688777766666777776666555 44578899999999
Q ss_pred HHHHHHHHHHHHHHhhhceee
Q 026894 89 ALLWLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 89 ~llwvv~llnl~rC~vsm~~~ 109 (231)
+-+|+...+.++|=+.|-.=+
T Consensus 149 aaI~~~~~l~lirPi~mGSWs 169 (344)
T 3arc_A 149 APLASAFAVFLIYPIGQGSFS 169 (344)
T ss_dssp HHHHHHHHHHTHHHHHHTCGG
T ss_pred HHHHHHHHHHHHhhccccccc
Confidence 999999999999999887443
No 2
>1eys_L Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: f.26.1.1
Probab=42.27 E-value=51 Score=29.86 Aligned_cols=81 Identities=12% Similarity=0.146 Sum_probs=59.1
Q ss_pred eeeeeeccceeeecCCCcccCCCceeccccccccccccceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHH
Q 026894 9 TINVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYY 88 (231)
Q Consensus 9 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY 88 (231)
++++.+.+.++..++||+. +|=+|..+-+--.+-++.+.+-+-..| |--..|-||-.+|=
T Consensus 71 ~~al~PP~~~yGL~~~PL~------------------~GG~w~~~~~~~~~~~~~w~~R~~e~a--r~LGmg~hva~AFs 130 (280)
T 1eys_L 71 RISIAPPDLSYGLRMAPLT------------------EGGLWQIITICAAGAFISWALREVEIC--RKLGIGFHVPFAFS 130 (280)
T ss_dssp TCCBCCCCGGGTTSCCCGG------------------GTHHHHHHHHHHHHHHHHHHHHHHHHH--HTTTCCCHHHHHHH
T ss_pred eEeecCCchHhcCccCchh------------------cCchHHHHHHHHHHHHHHHHHHHHHHH--HHhCCcchhhHHHH
Confidence 3445555666666666664 444577777766777777777666655 33478899999999
Q ss_pred HHHHHHHHHHHHHHhhhceee
Q 026894 89 ALLWLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 89 ~llwvv~llnl~rC~vsm~~~ 109 (231)
+-+|+...+.++|=+.|-.=+
T Consensus 131 aaI~~~~~l~lirPilmGsW~ 151 (280)
T 1eys_L 131 FAIGAYLVLVFVRPLLMGAWG 151 (280)
T ss_dssp HHHHHHHHHHTHHHHHHTCGG
T ss_pred HHHHHHHHHHHhhhccccccc
Confidence 999999999999999987443
No 3
>2k9p_A Pheromone alpha factor receptor; GPCR, micelle, structurral biology, fragment, G-protein COUP receptor, glycoprotein, membrane; NMR {Saccharomyces cerevisiae}
Probab=41.72 E-value=32 Score=25.57 Aligned_cols=25 Identities=16% Similarity=0.089 Sum_probs=17.6
Q ss_pred cCCchhhHHHHHHHHHHHHHHHHHHhhhc
Q 026894 78 NGRSYIMISYYALLWLACVLNLAWCSLQG 106 (231)
Q Consensus 78 ~trSpIf~tyY~llwvv~llnl~rC~vsm 106 (231)
+.|||||+.= =+.-++|++||..+.
T Consensus 45 krrspiF~lN----~~~L~l~iirs~l~~ 69 (80)
T 2k9p_A 45 SRKTPIFIIN----QVSLFLIILHSALYF 69 (80)
T ss_dssp CSCCCHHHHH----HHHHHHHHHHHHHHH
T ss_pred cccChhhHHH----HHHHHHHHHHHHHHH
Confidence 5899997432 334478999998864
No 4
>2iub_A CORA, divalent cation transport-related protein; membrane protein, ION transporter; 2.9A {Thermotoga maritima} SCOP: d.328.1.1 f.17.3.1 PDB: 2hn2_A 2bbj_A
Probab=31.14 E-value=50 Score=29.08 Aligned_cols=61 Identities=20% Similarity=0.439 Sum_probs=24.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeeecc-cceeecCCCCCCcceehhhHHHHHHHHHHHHHHHhccccc
Q 026894 150 TLARTFIISGIIVGVDMLLKVIYVFGFG-FPLFIDVDSTHRMKWGFWIIHELLLTAVYGFILFVHFSKW 217 (231)
Q Consensus 150 sL~Rtl~iS~lia~~d~llkaiy~f~~G-vplF~~~~~~~hgkw~FW~isslvf~~VY~~Il~LP~T~w 217 (231)
.+.++|.+-+.|-..=.++-.+|--+|+ .|+. +.+|+||.+--+..+++-+++..+-+-+|
T Consensus 301 ~imk~LTiit~IflP~T~IaGiyGMNf~~mPel-------~~~~Gy~~~l~~m~~i~~~~~~~Fkrk~W 362 (363)
T 2iub_A 301 EVMKVLTIIATIFMPLTFIAGIYGMNFEYMPEL-------RWKWGYPVVLAVMGVIAVIMVVYFKKKKW 362 (363)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTSCC---------------------CHHHHHHHHHHHHHHHTTTTSCC-
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcccCCCCCcc-------cCcHHHHHHHHHHHHHHHHHHHHHHHccc
Confidence 3344444443333333444478888875 6643 67789998766655555444444433333
No 5
>2wjn_M Reaction center protein M chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_M* 2x5u_M* 2x5v_M* 4ac5_M* 3t6e_M* 1prc_M* 1r2c_M* 1vrn_M* 1dxr_M* 2jbl_M* 2prc_M* 3d38_M* 3prc_M* 2i5n_M* 5prc_M* 6prc_M* 7prc_M* 3g7f_M* 3t6d_M*
Probab=29.46 E-value=1.2e+02 Score=28.10 Aligned_cols=80 Identities=11% Similarity=0.178 Sum_probs=57.6
Q ss_pred eeeeeccceeeecCCCcccCCCceeccccccccccccceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 026894 10 INVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYA 89 (231)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~ 89 (231)
+++.+.+.++..++||+. +|=+|..+-+--.+-++.+.+-+-++| |--..|-||-.+|=+
T Consensus 92 lal~PP~~~yGL~~~Pl~------------------~GG~w~~~~f~~~~s~~~w~~R~~e~a--r~LGmg~hva~AFsa 151 (324)
T 2wjn_M 92 LGLYPPKAQYGMGIPPLH------------------DGGWWLMAGLFMTLSLGSWWIRVYSRA--RALGLGTHIAWNFAA 151 (324)
T ss_dssp CCBCCCSSCCTTSCCCGG------------------GTHHHHHHHHHHHHHHHHHHHHHHHHH--HHTTCCSHHHHHHHH
T ss_pred EEecCCChHhccCCCchh------------------cCChHHHHHHHHHHHHHHHHHHHHHHH--HHhCCcchhHHHHHH
Confidence 455666667777777753 344577666666666666666555554 344788999999999
Q ss_pred HHHHHHHHHHHHHhhhceee
Q 026894 90 LLWLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 90 llwvv~llnl~rC~vsm~~~ 109 (231)
-+|+...+.++|=++|-.=+
T Consensus 152 aI~~~~~l~lirPilmGsWs 171 (324)
T 2wjn_M 152 AIFFVLCIGCIHPTLVGSWS 171 (324)
T ss_dssp HHHHHHHHHTHHHHHHTCGG
T ss_pred HHHHHHHHHHHhhccccccc
Confidence 99999999999999876443
No 6
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=27.40 E-value=2.9e+02 Score=23.87 Aligned_cols=61 Identities=25% Similarity=0.568 Sum_probs=34.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhhheeeecc-cceeecCCCCCCcceehhhHHHHHHHHHHHHHHHhccccc
Q 026894 150 TLARTFIISGIIVGVDMLLKVIYVFGFG-FPLFIDVDSTHRMKWGFWIIHELLLTAVYGFILFVHFSKW 217 (231)
Q Consensus 150 sL~Rtl~iS~lia~~d~llkaiy~f~~G-vplF~~~~~~~hgkw~FW~isslvf~~VY~~Il~LP~T~w 217 (231)
.+.++|.+-+.|-..=.++-.+|--+|+ .|+ -+.+|+||.+-.+..+++-+++..+-+-+|
T Consensus 277 ~~mk~LTiit~IflP~T~IaGiyGMNf~~mPe-------l~~~~gy~~~l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 277 QIMKILTMVTTIFAVPMWITGIYGMNFSYLPL-------ANNPQGFWLVMALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHHHHSSHHHHHHHHTTCCCSCCTT-------SSCTTHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccCcCCCCCC-------ccCchHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 3444454444433333334477877774 563 367789998776666555555555444444
No 7
>2wjn_L Reaction center protein L chain; bacteriochlorophyll, lipidic-sponge phase, photosynthesis, R center, electron transport, cell membrane; HET: HEM FME BCB BPB MPG MQ7 NS5; 1.86A {Rhodopseudomonas viridis} PDB: 2wjm_L* 2x5u_L* 2x5v_L* 4ac5_L* 3t6e_L* 1r2c_L* 1prc_L* 1vrn_L* 2jbl_L* 2prc_L* 3d38_L* 3g7f_L* 3prc_L* 2i5n_L* 3t6d_L* 5prc_L* 6prc_L* 7prc_L* 1dxr_L*
Probab=24.44 E-value=1.8e+02 Score=26.30 Aligned_cols=62 Identities=15% Similarity=0.189 Sum_probs=48.2
Q ss_pred cceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhceee
Q 026894 46 HGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 46 ~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~llwvv~llnl~rC~vsm~~~ 109 (231)
+|=+|..+.+--.+-++.+.+-+-..|+ --..|-||-.+|=+-+|....+.++|=+.|-.=+
T Consensus 83 ~GG~w~~~~~~~~~~~~~w~~R~~e~ar--~LGmg~hia~AFsaaI~~~~~l~lirPilmGsW~ 144 (274)
T 2wjn_L 83 EGGFWQAITVCALGAFISWMLREVEISR--KLGIGWHVPLAFCVPIFMFCVLQVFRPLLLGSWG 144 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHHHHH--HTTCCSHHHHHHHHHHHHHHHHHTHHHHHHTCGG
T ss_pred cCCHHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCcchhHHHHHHHHHHHHHHHHhhccccccc
Confidence 4446877777777777777776666553 3478899999999999999999999999987444
No 8
>1eys_M Photosynthetic reaction center; membrane protein complex, electron transport; HET: BGL BCL BPH MQ8 HEM CRT LDA PEF; 2.20A {Thermochromatium tepidum} SCOP: f.26.1.1
Probab=23.42 E-value=1.6e+02 Score=27.11 Aligned_cols=62 Identities=16% Similarity=0.140 Sum_probs=46.0
Q ss_pred cceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhceee
Q 026894 46 HGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 46 ~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~llwvv~llnl~rC~vsm~~~ 109 (231)
+|=+|..+.+--.+-++.+.+-+-..| |--..|-||-.+|=+-+|+...+.++|=+.|-.=+
T Consensus 110 ~GG~w~~~~~~~~~s~~~w~~R~~e~a--r~LGmg~hia~AFsaaI~~~~~l~lirPilmGsWs 171 (324)
T 1eys_M 110 EGGWWLIAGLFLTLSILLWWVRTYKRA--EALGMSQHLSWAFAAAIFFYLVLGFIRPVMMGSWA 171 (324)
T ss_dssp GTHHHHHHHHHHHHHHHHHHHHHHHHH--HTTSCCTHHHHHHHHHHHHHHHHHTHHHHHHTCGG
T ss_pred cCCcHHHHHHHHHHHHHHHHHHHHHHH--HHhCCcchhhHHHHHHHHHHHHHHHHhhccccccc
Confidence 344577666666666666666555554 33478899999999999999999999999876443
No 9
>1rzh_L Reaction center protein L chain; bacterial photosynthesis, proton TR pathway, revertant, integral membrane protein, photosynthes; HET: BCL BPH U10 HTO SPO LDA CDL; 1.80A {Rhodobacter sphaeroides} SCOP: f.26.1.1 PDB: 1rvj_L* 1ry5_L* 1rzz_L* 1s00_L* 2j8c_L* 1aig_L* 1ds8_L* 1dv3_L* 1dv6_L* 1e14_L* 1e6d_L* 1jgw_L* 1jgx_L* 1jgy_L* 1jgz_L* 1k6l_L* 1kby_L* 1l9b_L* 1l9j_L* 1m3x_L* ...
Probab=23.23 E-value=1.9e+02 Score=26.25 Aligned_cols=80 Identities=15% Similarity=0.099 Sum_probs=56.7
Q ss_pred eeeeeccceeeecCCCcccCCCceeccccccccccccceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 026894 10 INVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYA 89 (231)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~ 89 (231)
+++...+.++..++||+ .+|=+|..+.+--.+-++.+.+-+-..|+ --..|-||-.+|=+
T Consensus 64 ~ai~Pp~~~yGL~~~Pl------------------~~GG~w~~~~~~~~~~~~~w~~R~~e~ar--~LGmg~hva~AFsa 123 (281)
T 1rzh_L 64 ISVYPPALEYGLGGAPL------------------AKGGLWQIITICATGAFVSWALREVEICR--KLGIGYHIPFAFAF 123 (281)
T ss_dssp CCBCCCCGGGTTSCCCG------------------GGTHHHHHHHHHHHHHHHHHHHHHHHHHH--HHTCCSHHHHHHHH
T ss_pred EeeCCCCHHHhCCCCch------------------hcCchHHHHHHHHHHHHHHHHHHHHHHHH--HhCCCcchhHHHHH
Confidence 34444555555666665 23445777776666667777766666553 34788999999999
Q ss_pred HHHHHHHHHHHHHhhhceee
Q 026894 90 LLWLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 90 llwvv~llnl~rC~vsm~~~ 109 (231)
-+|....+.++|=+.|-.=+
T Consensus 124 aI~~~~~l~lirPilmGsW~ 143 (281)
T 1rzh_L 124 AILAYLTLVLFRPVMMGAWG 143 (281)
T ss_dssp HHHHHHHHHTHHHHHHTCGG
T ss_pred HHHHHHHHHHHhcccccccc
Confidence 99999999999999987443
No 10
>3arc_K Photosystem II reaction center protein K; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1izl_K* 1s5l_K* 2axt_K* 3bz1_K* 3bz2_K* 3kzi_K* 3prq_K* 3prr_K* 3a0b_K* 3a0h_K*
Probab=18.27 E-value=83 Score=20.69 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=21.5
Q ss_pred eehhHHHhhHHHHHHHHHHhhhhhhh
Q 026894 49 LYDAALVVPTVLFVLYLVVHAKKNLT 74 (231)
Q Consensus 49 ~wDv~LlvPn~LFllFL~~r~~~s~~ 74 (231)
+=|++=++|.+.|++=.+||+..++|
T Consensus 12 ivDvmPiIPv~f~lLafvWQAav~fR 37 (37)
T 3arc_K 12 LVDVLPVIPVLFLALAFVWQAAVGFR 37 (37)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhchHHHHHHHHHHHHHHhhcCC
Confidence 45888899999999999999876653
Done!