Query 026894
Match_columns 231
No_of_seqs 37 out of 39
Neff 3.3
Searched_HMMs 13730
Date Tue Mar 26 00:51:29 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026894.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026894hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2j8cl1 f.26.1.1 (L:1-281) L ( 37.4 40 0.0029 28.4 7.0 79 10-109 64-143 (281)
2 d2i5nl1 f.26.1.1 (L:1-273) L ( 34.8 42 0.003 28.2 6.7 172 10-214 64-254 (273)
3 d2axta1 f.26.1.1 (A:10-344) Ph 34.4 23 0.0017 30.6 5.1 90 10-109 71-160 (335)
4 d1eysl_ f.26.1.1 (L:) L (light 33.4 45 0.0032 28.1 6.6 80 10-109 72-151 (280)
5 d2i5nm1 f.26.1.1 (M:1-323) M ( 23.0 90 0.0066 26.6 6.8 79 11-109 92-170 (323)
6 d2axtk1 f.23.36.1 (K:10-46) Ph 19.1 36 0.0027 20.8 2.4 25 49-73 12-36 (37)
7 d1eysm_ f.26.1.1 (M:) M (mediu 16.5 1.4E+02 0.011 25.2 6.6 59 49-109 113-171 (318)
8 d2j8cm1 f.26.1.1 (M:1-303) M ( 14.8 1.7E+02 0.013 24.6 6.7 61 47-109 112-172 (303)
9 d2iuba2 f.17.3.1 (A:286-349) M 12.3 1.6E+02 0.012 18.2 5.5 35 170-211 24-59 (64)
10 d1hyoa1 b.34.8.1 (A:1-118) Fum 11.5 35 0.0025 24.7 1.0 15 24-38 12-26 (118)
No 1
>d2j8cl1 f.26.1.1 (L:1-281) L (light) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=37.43 E-value=40 Score=28.41 Aligned_cols=79 Identities=16% Similarity=0.131 Sum_probs=55.4
Q ss_pred eeeeeccceeeecCCCcccCCCceeccccccccccccceeehhHHHhhHHHHHHHHHHhhhhh-hhhhhcCCchhhHHHH
Q 026894 10 INVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKN-LTKLCNGRSYIMISYY 88 (231)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wDv~LlvPn~LFllFL~~r~~~s-~~KL~~trSpIf~tyY 88 (231)
+++...+.++..++||++| |=+|-.+-+--.+-|+ .+-.|.- +.|--..+-||-.+|=
T Consensus 64 lsl~PP~~~yGL~~~PL~e------------------GG~W~i~~~~~~~s~~---~W~~R~~e~ar~LGmg~hv~~AF~ 122 (281)
T d2j8cl1 64 ISVYPPALEYGLGGAPLAK------------------GGLWQIITICATGAFV---SWALREVEICRKLGIGYHIPFAFA 122 (281)
T ss_dssp CEECCCCGGGTTSCCCGGG------------------THHHHHHHHHHHHHHH---HHHHHHHHHHHHHTCCSHHHHHHH
T ss_pred eeecCCChhhCCCCCCccc------------------ChHHHHHHHHHHHHHH---HHHHHHHHHHHHhCCcchhhHHHH
Confidence 5566677777778888877 3345555444444444 4444444 4455677889999999
Q ss_pred HHHHHHHHHHHHHHhhhceee
Q 026894 89 ALLWLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 89 ~llwvv~llnl~rC~vsm~~~ 109 (231)
+-.|+...+.++|=+++-.=+
T Consensus 123 ~aI~~~~~l~~irPilmGsW~ 143 (281)
T d2j8cl1 123 FAILAYLTLVLFRPVMMGAWG 143 (281)
T ss_dssp HHHHHHHHHHTHHHHHHTCGG
T ss_pred HHHHHHHHhheeeeccccccc
Confidence 999999999999999976443
No 2
>d2i5nl1 f.26.1.1 (L:1-273) L (light) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=34.83 E-value=42 Score=28.21 Aligned_cols=172 Identities=15% Similarity=0.167 Sum_probs=93.3
Q ss_pred eeeeeccceeeecCCCcccCCCceeccccccccccccceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 026894 10 INVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYA 89 (231)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~ 89 (231)
+++...++++..++||++| |=+|-.+-+--.+-|+.+.+-+.++ .|--..+-||-.+|=+
T Consensus 64 lsl~PP~~~yGL~~~PL~e------------------GG~w~i~~~~~~~s~~~W~~R~~e~--ar~LGmg~hv~~AF~~ 123 (273)
T d2i5nl1 64 ISINPPDLKYGLGAAPLLE------------------GGFWQAITVCALGAFISWMLREVEI--SRKLGIGWHVPLAFCV 123 (273)
T ss_dssp CCBCCCCGGGTTSCCCGGG------------------THHHHHHHHHHHHHHHHHHHHHHHH--HHHHTCCSHHHHHHHH
T ss_pred EEccCCchhhCcCCCCccc------------------CcHHHHHHHHHHHHHHHHHHHHHHH--HHHhCCcchhhHHHHH
Confidence 4455566677777777776 3346555554444455544444433 3445678899999999
Q ss_pred HHHHHHHHHHHHHhhhceeecC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHhhh-c-ccchHHHHHHHHHHHHHHHH--H
Q 026894 90 LLWLACVLNLAWCSLQGWQCSA-GKEVAWNLLSLFTVAAVLYLEISLMAFLLQE-S-YASGLETLARTFIISGIIVG--V 164 (231)
Q Consensus 90 llwvv~llnl~rC~vsm~~~t~-~~~~awnILwL~tRFglL~lEvSVvvFll~g-~-~~s~~esL~Rtl~iS~lia~--~ 164 (231)
-+|+...+.++|=+++-.-+.. --.+.-.+=|.- .|.++. | +.+-.-.|.-+++.++.+.. =
T Consensus 124 aI~~~~~l~~irPilmGsW~~a~PyGIf~HLDW~~-------------~fs~~ygN~~YNPfHmlsI~fl~gsaLl~AmH 190 (273)
T d2i5nl1 124 PIFMFCVLQVFRPLLLGSWGHAFPYGILSHLDWVN-------------NFGYQYLNWHYNPGHMSSVSFLFVNAMALGLH 190 (273)
T ss_dssp HHHHHHHHHTHHHHHHTCGGGSCCBSTTHHHHHHH-------------HHHHTTSCGGGCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHheeeecccccccccCccchhHHHHHHH-------------HHHHHhcceeeCHHHHHHHHHHHHHHHHHHhh
Confidence 9999999999999997644421 122222222322 344442 2 13333344444444333221 1
Q ss_pred HHHHhhheeeecccceeecC------------CCCC--CcceehhhHHHHHHHHHHHHHHHhcc
Q 026894 165 DMLLKVIYVFGFGFPLFIDV------------DSTH--RMKWGFWIIHELLLTAVYGFILFVHF 214 (231)
Q Consensus 165 d~llkaiy~f~~GvplF~~~------------~~~~--hgkw~FW~isslvf~~VY~~Il~LP~ 214 (231)
-.++-++-.++.|-.....+ +.+. =..|++|++-...++..-++++-=|.
T Consensus 191 GatILa~~~~g~~~e~~~~e~~~~FwR~~mG~s~~~~gIHR~~~~~A~~~~~~s~igIllsG~~ 254 (273)
T d2i5nl1 191 GGLILSVANPGDGDKVKTAEHENQYFRDVVGYSIGALSIHRLGLFLASNIFLTGAFGTIASGPF 254 (273)
T ss_dssp HHHHHHHHCCSTTCCCCCHHHHHHHHHHHHSBCCCTTHHHHHHHHHHHHHHHHHHHHHHHBTTT
T ss_pred hhheeeeecCCCCccccchHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHhheEEEEECCc
Confidence 12222333455442211000 0011 24678999988888887777776664
No 3
>d2axta1 f.26.1.1 (A:10-344) Photosystem Q(B) protein 1, PsbA1 {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=34.36 E-value=23 Score=30.63 Aligned_cols=90 Identities=20% Similarity=0.110 Sum_probs=65.7
Q ss_pred eeeeeccceeeecCCCcccCCCceeccccccccccccceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 026894 10 INVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYA 89 (231)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~ 89 (231)
..+.+.+++...++||+.|-- ...+|+++ |=+|-.+.+--.+-+..+++-+... +|--..|-+|-.+|=+
T Consensus 71 ~Av~PPs~~~GL~f~PLwe~~------s~~~wl~~--GG~w~ii~~~~l~~v~~w~~R~~e~--a~~LGMr~~ia~AFsa 140 (335)
T d2axta1 71 GAVVPSSNAIGLHFYPIWEAA------SLDEWLYN--GGPYQLIIFHFLLGASCYMGRQWEL--SYRLGMRPWICVAYSA 140 (335)
T ss_dssp CCBCCCCTTTTTSCCCGGGSS------SHHHHHHT--THHHHHHHHHHHHHHHHHHHHHHHH--HHHTTCCSCHHHHTHH
T ss_pred EEecCChhhccccccccccch------hhHHHHHc--CCcHHHHHHHHHHHHHHHHHHHHHH--HHHhCCchhhhHHHHH
Confidence 346677888888899988632 23468876 5567777666556666665555444 3445678899999999
Q ss_pred HHHHHHHHHHHHHhhhceee
Q 026894 90 LLWLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 90 llwvv~llnl~rC~vsm~~~ 109 (231)
-+|+...+.++|=+.|-.=+
T Consensus 141 ~I~~~~~v~li~Pi~~Gsws 160 (335)
T d2axta1 141 PLASAFAVFLIYPIGQGSFS 160 (335)
T ss_dssp HHHHHHHHHTHHHHHHTCTT
T ss_pred HHHHHHHHhhheecccccch
Confidence 99999999999999987443
No 4
>d1eysl_ f.26.1.1 (L:) L (light) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=33.40 E-value=45 Score=28.11 Aligned_cols=80 Identities=14% Similarity=0.187 Sum_probs=53.1
Q ss_pred eeeeeccceeeecCCCcccCCCceeccccccccccccceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHH
Q 026894 10 INVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYA 89 (231)
Q Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~ 89 (231)
+.+...++++..++||+.| |=+|-.+-+--.+-++.+.+-+-+ +.|--..+-||-.+|=+
T Consensus 72 lal~PP~~~yGL~~~PL~e------------------GG~w~i~~ff~~~s~~~Ww~R~~e--~ar~LGmg~hva~AFsa 131 (280)
T d1eysl_ 72 ISIAPPDLSYGLRMAPLTE------------------GGLWQIITICAAGAFISWALREVE--ICRKLGIGFHVPFAFSF 131 (280)
T ss_dssp CCBCCCCGGGTTSCCCGGG------------------THHHHHHHHHHHHHHHHHHHHHHH--HHHTTTCCCHHHHHHHH
T ss_pred eeecCCChHhhcccCchhc------------------CChHHHHHHHHHHHHHHHHHHHHH--HHHHhCCcchhhHHHHH
Confidence 3445566666777777766 334554444333444444333333 44555678899999999
Q ss_pred HHHHHHHHHHHHHhhhceee
Q 026894 90 LLWLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 90 llwvv~llnl~rC~vsm~~~ 109 (231)
-+|+...+.++|=+++-.=+
T Consensus 132 aI~~~l~L~~irPilmGsWs 151 (280)
T d1eysl_ 132 AIGAYLVLVFVRPLLMGAWG 151 (280)
T ss_dssp HHHHHHHHHTHHHHHHTCGG
T ss_pred HHHHHHHHHhheecccccch
Confidence 99999999999999987444
No 5
>d2i5nm1 f.26.1.1 (M:1-323) M (medium) subunit {Rhodopseudomonas viridis [TaxId: 1079]}
Probab=23.00 E-value=90 Score=26.64 Aligned_cols=79 Identities=11% Similarity=0.178 Sum_probs=54.8
Q ss_pred eeeeccceeeecCCCcccCCCceeccccccccccccceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHH
Q 026894 11 NVTTASESFSVSLPPIAELPFPVKSIGGNESVRQCHGVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYAL 90 (231)
Q Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~l 90 (231)
++...+.++..++||+.| |-+|-.+-+--..-|+.+.+-+-++| |--..+-||-.+|=+-
T Consensus 92 sl~PP~~~yGL~~~PL~e------------------GG~W~i~~f~~~~s~~~W~~R~~e~a--r~LGmG~Hva~AFsaA 151 (323)
T d2i5nm1 92 GLYPPKAQYGMGIPPLHD------------------GGWWLMAGLFMTLSLGSWWIRVYSRA--RALGLGTHIAWNFAAA 151 (323)
T ss_dssp CBCCCSSCCTTSCCCGGG------------------THHHHHHHHHHHHHHHHHHHHHHHHH--HHTTCCSHHHHHHHHH
T ss_pred eecCCCHHHccCCCcccc------------------ccHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCchhHHHHHHHH
Confidence 444556666777777776 44576666655555555555444443 3345778999999999
Q ss_pred HHHHHHHHHHHHhhhceee
Q 026894 91 LWLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 91 lwvv~llnl~rC~vsm~~~ 109 (231)
.|+...+.++|=+++-.=+
T Consensus 152 I~~y~~L~~iRPilmGsWs 170 (323)
T d2i5nm1 152 IFFVLCIGCIHPTLVGSWS 170 (323)
T ss_dssp HHHHHHHHTHHHHHHTCGG
T ss_pred HHHHHHHhhheecccccch
Confidence 9999999999999976433
No 6
>d2axtk1 f.23.36.1 (K:10-46) Photosystem II reaction center protein K, PsbK {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=19.05 E-value=36 Score=20.78 Aligned_cols=25 Identities=28% Similarity=0.437 Sum_probs=21.0
Q ss_pred eehhHHHhhHHHHHHHHHHhhhhhh
Q 026894 49 LYDAALVVPTVLFVLYLVVHAKKNL 73 (231)
Q Consensus 49 ~wDv~LlvPn~LFllFL~~r~~~s~ 73 (231)
+-|++=+||.+.|++=.+||+-.++
T Consensus 12 ivdvlPiIPv~f~lLafVWQAaV~F 36 (37)
T d2axtk1 12 LVDVLPVIPVLFLALAFVWQAAVGF 36 (37)
T ss_dssp HHHHGGGHHHHHHHHHHHHHHHTTT
T ss_pred HHHHhccHHHHHHHHHHHHHHHhcc
Confidence 4588889999999999999987654
No 7
>d1eysm_ f.26.1.1 (M:) M (medium) subunit {Thermochromatium tepidum [TaxId: 1050]}
Probab=16.46 E-value=1.4e+02 Score=25.24 Aligned_cols=59 Identities=15% Similarity=0.126 Sum_probs=42.1
Q ss_pred eehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhceee
Q 026894 49 LYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 49 ~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~llwvv~llnl~rC~vsm~~~ 109 (231)
+|-.+-+--.+-|+.+.+-+.++| |--..+-||-.+|=+-+|+...+.++|=+++-.=+
T Consensus 113 ~W~i~~~~~~~s~~~W~~R~~e~a--r~LGmg~hv~~AF~~aI~~y~~l~~irPilmGsW~ 171 (318)
T d1eysm_ 113 WWLIAGLFLTLSILLWWVRTYKRA--EALGMSQHLSWAFAAAIFFYLVLGFIRPVMMGSWA 171 (318)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH--HTTSCCTHHHHHHHHHHHHHHHHHTHHHHHHTCGG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH--HHhCCchhHHHHHHHHHHHHHHHhhheecccccch
Confidence 466665555555555555444433 33467889999999999999999999999976433
No 8
>d2j8cm1 f.26.1.1 (M:1-303) M (medium) subunit {Rhodobacter sphaeroides [TaxId: 1063]}
Probab=14.83 E-value=1.7e+02 Score=24.58 Aligned_cols=61 Identities=16% Similarity=0.080 Sum_probs=45.3
Q ss_pred ceeehhHHHhhHHHHHHHHHHhhhhhhhhhhcCCchhhHHHHHHHHHHHHHHHHHHhhhceee
Q 026894 47 GVLYDAALVVPTVLFVLYLVVHAKKNLTKLCNGRSYIMISYYALLWLACVLNLAWCSLQGWQC 109 (231)
Q Consensus 47 g~~wDv~LlvPn~LFllFL~~r~~~s~~KL~~trSpIf~tyY~llwvv~llnl~rC~vsm~~~ 109 (231)
|=+|-.+-+--.+-|+.+.+-+.++| |--..+-||-.+|=+-.|+...+.++|=+++-.-+
T Consensus 112 GG~W~i~~f~~~~sv~~W~~R~~e~a--r~LGmg~hva~AF~~aI~~~~~l~~irPilmGsW~ 172 (303)
T d2j8cm1 112 GGLWLIASFFMFVAVWSWWGRTYLRA--QALGMGKHTAWAFLSAIWLWMVLGFIRPILMGSWS 172 (303)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHHH--HHTTCCSHHHHHHHHHHHHHHHHHTHHHHHHTCGG
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHH--HHhCCchHHHHHHHHHHHHHHHHhheeeccccchh
Confidence 44577776666666666666555544 34467889999999999999999999999976444
No 9
>d2iuba2 f.17.3.1 (A:286-349) Magnesium transport protein CorA {Thermotoga maritima [TaxId: 2336]}
Probab=12.26 E-value=1.6e+02 Score=18.18 Aligned_cols=35 Identities=23% Similarity=0.555 Sum_probs=14.2
Q ss_pred hheeeecc-cceeecCCCCCCcceehhhHHHHHHHHHHHHHHH
Q 026894 170 VIYVFGFG-FPLFIDVDSTHRMKWGFWIIHELLLTAVYGFILF 211 (231)
Q Consensus 170 aiy~f~~G-vplF~~~~~~~hgkw~FW~isslvf~~VY~~Il~ 211 (231)
.+|--+++ .| +.+..|+||.+-.+...++.+.+..
T Consensus 24 gifGMN~~~~P-------~~~~~~~~~~~~~~~~~~~~~~~~~ 59 (64)
T d2iuba2 24 GIYGMNFEYMP-------ELRWKWGYPVVLAVMGVIAVIMVVY 59 (64)
T ss_dssp TSCC---------------------CHHHHHHHHHHHHHHHTT
T ss_pred hhhccCCCCCC-------CCCccHHHHHHHHHHHHHHHHHHHH
Confidence 66666642 33 2355677888777766665555443
No 10
>d1hyoa1 b.34.8.1 (A:1-118) Fumarylacetoacetate hydrolase, FAH, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}
Probab=11.54 E-value=35 Score=24.75 Aligned_cols=15 Identities=40% Similarity=0.549 Sum_probs=12.3
Q ss_pred CCcccCCCceecccc
Q 026894 24 PPIAELPFPVKSIGG 38 (231)
Q Consensus 24 ~~~~~~~~~~~~~~~ 38 (231)
=||..||+||.|.+.
T Consensus 12 FpiqNLPfGVfs~~~ 26 (118)
T d1hyoa1 12 FPIQNLPYGVFSTQS 26 (118)
T ss_dssp CCTTTCCEEEEECSS
T ss_pred CCcccCCeEEEEcCC
Confidence 379999999998643
Done!