BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026895
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1FF3|A Chain A, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|B Chain B, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
pdb|1FF3|C Chain C, Structure Of The Peptide Methionine Sulfoxide Reductase
From Escherichia Coli
Length = 211
Score = 96.7 bits (239), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 83/154 (53%), Gaps = 23/154 (14%)
Query: 43 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYD 98
++ A+FA+G FW E +F L GV T GY GG NP +R + GD HAE+V++ YD
Sbjct: 42 MEIAIFAMGXFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYD 101
Query: 99 PRVINFRQLLEVFWTSHD--------------CRSIIFTNGTEESRLAAHSKEREQMKSK 144
P VI++ QLL+VFW +HD RS I+ E+ A S ER Q
Sbjct: 102 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAML 161
Query: 145 SSI----VTTQIQQLVAFYPAEPEHQKFELKRNP 174
++ +TT+I FY AE +HQ++ L +NP
Sbjct: 162 AADDDRHITTEIANATPFYYAEDDHQQY-LHKNP 194
>pdb|2IEM|A Chain A, Solution Structure Of An Oxidized Form (Cys51-Cys198) Of
E. Coli Methionine Sulfoxide Reductase A (Msra)
Length = 211
Score = 96.7 bits (239), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 81/154 (52%), Gaps = 23/154 (14%)
Query: 43 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYD 98
++ A+FA+G FW E +F L GV T GY GG NP +R + GD HAE+V++ YD
Sbjct: 42 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVSSGDTGHAEAVRIVYD 101
Query: 99 PRVINFRQLLEVFWTSHD--------------CRSIIFTNGTEESRLAAHSKEREQ---- 140
P VI++ QLL+VFW +HD RS I+ E+ A S ER Q
Sbjct: 102 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAML 161
Query: 141 MKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 174
+TT+I FY AE +HQ++ L +NP
Sbjct: 162 AADDDRHITTEIANATPFYYAEDDHQQY-LHKNP 194
>pdb|2GT3|A Chain A, Solution Structure And Dynamics Of The Reduced Form Of
Methionine Sulfoxide Reductase A From Escherichia Coli,
A 23 Kda Protein
Length = 212
Score = 96.3 bits (238), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 59/154 (38%), Positives = 83/154 (53%), Gaps = 23/154 (14%)
Query: 43 LKAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL--GD--HAESVQVEYD 98
++ A+FA+G FW E +F L GV T GY GG NP +R + GD HAE+V++ YD
Sbjct: 43 MEIAIFAMGCFWGVERLFWQLPGVYSTAAGYTGGYTPNPTYREVCSGDTGHAEAVRIVYD 102
Query: 99 PRVINFRQLLEVFWTSHD--------------CRSIIFTNGTEESRLAAHSKEREQMKSK 144
P VI++ QLL+VFW +HD RS I+ E+ A S ER Q
Sbjct: 103 PSVISYEQLLQVFWENHDPAQGMRQGNDHGTQYRSAIYPLTPEQDAAARASLERFQAAML 162
Query: 145 SSI----VTTQIQQLVAFYPAEPEHQKFELKRNP 174
++ +TT+I FY AE +HQ++ L +NP
Sbjct: 163 AADDDRHITTEIANATPFYYAEDDHQQY-LHKNP 195
>pdb|4GWB|A Chain A, Crystal Structure Of Putative Peptide Methionine Sulfoxide
Reductase From Sinorhizobium Meliloti 1021
Length = 168
Score = 85.9 bits (211), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 77/146 (52%), Gaps = 16/146 (10%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVIN 103
K AV A G FW + + L GV+ T VGY GG N +RN G HAE +++ +DP I+
Sbjct: 3 KRAVLAGGCFWGXQDLIRKLPGVIETRVGYTGGDVPNATYRNHGTHAEGIEIIFDPERIS 62
Query: 104 FRQLLEVFWTSHD--------------CRSIIFTNGTEESRLAAHS-KEREQMKSKSSIV 148
+R++LE+F+ HD RS I+ E+ R+A + + E V
Sbjct: 63 YRRILELFFQIHDPTTKDRQGNDIGTSYRSAIYYVDDEQKRIAQETIADVEASGLWPGKV 122
Query: 149 TTQIQQLVAFYPAEPEHQKFELKRNP 174
T+++ + F+ AEPEHQ + L+R P
Sbjct: 123 VTEVEPVRDFWEAEPEHQNY-LERYP 147
>pdb|2L90|A Chain A, Solution Structure Of Murine Myristoylated Msra
Length = 212
Score = 85.5 bits (210), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 55/152 (36%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDP 99
+ AVF +G FW +E F L GV T VG+AGG NP ++ + HAE V+V Y P
Sbjct: 43 QMAVFGMGCFWGAERKFWVLKGVYSTQVGFAGGHTRNPTYKEVCSEKTGHAEVVRVVYRP 102
Query: 100 RVINFRQLLEVFWTSHD--------------CRSIIFTNGTEESRLAAHSKEREQM---K 142
I+F +LL+VFW +HD RS ++ + A SKE Q K
Sbjct: 103 EHISFEELLKVFWENHDPTQGMRQGNDFGTQYRSAVYPTSAVQMEAALRSKEEYQKVLSK 162
Query: 143 SKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 174
+TT I++ FY AE HQ++ L +NP
Sbjct: 163 HNFGPITTDIREGQVFYYAEDYHQQY-LSKNP 193
>pdb|1FVA|A Chain A, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
pdb|1FVA|B Chain B, Crystal Structure Of Bovine Methionine Sulfoxide Reductase
Length = 217
Score = 84.7 bits (208), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 77/152 (50%), Gaps = 22/152 (14%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDP 99
+ AVF +G FW +E F L GV T VG+AGG NP ++ + HAE V+V + P
Sbjct: 52 QMAVFGMGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQP 111
Query: 100 RVINFRQLLEVFWTSHD--------------CRSIIFTNGTEESRLAAHSKEREQM---K 142
I+F +LL+VFW +HD RS I+ E A SKE Q +
Sbjct: 112 EHISFEELLKVFWENHDPTQGMRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSE 171
Query: 143 SKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 174
++TT I++ FY AE HQ++ L ++P
Sbjct: 172 HGFGLITTDIREGQTFYYAEDYHQQY-LSKDP 202
>pdb|1FVG|A Chain A, Crystal Structure Of Bovine Peptide Methionine Sulfoxide
Reductase
Length = 199
Score = 83.2 bits (204), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 54/152 (35%), Positives = 76/152 (50%), Gaps = 22/152 (14%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNL----GDHAESVQVEYDP 99
+ AVF G FW +E F L GV T VG+AGG NP ++ + HAE V+V + P
Sbjct: 44 QXAVFGXGCFWGAERKFWTLKGVYSTQVGFAGGYTPNPTYKEVCSGKTGHAEVVRVVFQP 103
Query: 100 RVINFRQLLEVFWTSHD--------------CRSIIFTNGTEESRLAAHSKEREQM---K 142
I+F +LL+VFW +HD RS I+ E A SKE Q +
Sbjct: 104 EHISFEELLKVFWENHDPTQGXRQGNDHGSQYRSAIYPTSAEHVGAALKSKEDYQKVLSE 163
Query: 143 SKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 174
++TT I++ FY AE HQ++ L ++P
Sbjct: 164 HGFGLITTDIREGQTFYYAEDYHQQY-LSKDP 194
>pdb|1NWA|A Chain A, Structure Of Mycobacterium Tuberculosis Methionine
Sulfoxide Reductase A In Complex With Protein-Bound
Methionine
Length = 203
Score = 80.9 bits (198), Expect = 6e-16, Method: Compositional matrix adjust.
Identities = 51/146 (34%), Positives = 75/146 (51%), Gaps = 16/146 (10%)
Query: 44 KAAVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLGDHAESVQVEYDPRVIN 103
+ A+ A G FW + + GVV T VGY+GG+ N +RN G HAE+V++ +DP V +
Sbjct: 26 QKAILAGGCFWGLQDLIRNQPGVVSTRVGYSGGNIPNATYRNHGTHAEAVEIIFDPTVTD 85
Query: 104 FRQLLEVFWTSHD--------------CRSIIFTNGTEESRLAAHS-KEREQMKSKSSIV 148
+R LLE F+ HD RS IF ++ R+A + + E V
Sbjct: 86 YRTLLEFFFQIHDPTTKDRQGNDRGTSYRSAIFYFDEQQKRIALDTIADVEASGLWPGKV 145
Query: 149 TTQIQQLVAFYPAEPEHQKFELKRNP 174
T++ F+ AEPEHQ + L+R P
Sbjct: 146 VTEVSPAGDFWEAEPEHQDY-LQRYP 170
>pdb|2J89|A Chain A, Functional And Structural Aspects Of Poplar Cytosolic And
Plastidial Type A Methionine Sulfoxide Reductases
Length = 261
Score = 74.7 bits (182), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 53/159 (33%), Positives = 75/159 (47%), Gaps = 20/159 (12%)
Query: 36 NDELGRPLKA-AVFALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHA 90
+D+L P + A F G FW E F + GV +T VGY G NP + ++ +H
Sbjct: 86 DDDLPAPGQQFAQFGAGCFWGVELAFQRVPGVTKTEVGYTQGLLHNPTYEDVXTGTTNHN 145
Query: 91 ESVQVEYDPRVINFRQLLEVFWTSHD--------------CRSIIFTNGTEESRLAAHSK 136
E V+V+YDP+ +F L++V W HD RS I+ E+ + A S
Sbjct: 146 EVVRVQYDPKECSFDTLIDVLWARHDPTTLNRQGNDVGTQYRSGIYYYTPEQEKAAKESL 205
Query: 137 EREQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNPF 175
ER+Q IV T+I FY AE HQ++ K F
Sbjct: 206 ERQQKLLNRKIV-TEILPAKKFYRAEEYHQQYLAKGGRF 243
>pdb|3BQF|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Complex With A Substrate)
Length = 194
Score = 66.6 bits (161), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 46/145 (31%), Positives = 70/145 (48%), Gaps = 20/145 (13%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVIN 103
A GSFW EA F ++GVV GYA G+ NP + ++ HAE+V+V YD ++
Sbjct: 8 LAGGSFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 104 FRQLLEVFW--------------TSHDCRSIIFTNGTEESRLAAHSKEREQMKSKSSIVT 149
+L+ F+ T RS ++ E + A + +REQ K + +V
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLV- 126
Query: 150 TQIQQLVAFYPAEPEHQKFELKRNP 174
+ + L FY AE HQ + L +NP
Sbjct: 127 VENEPLKNFYDAEEYHQDY-LIKNP 150
>pdb|3BQG|A Chain A, Structure Of The Central Domain (msra) Of Neisseria
Meningitidis Pilb (sulfenic Acid Form)
Length = 194
Score = 65.1 bits (157), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 20/145 (13%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVIN 103
A G FW EA F ++GVV GYA G+ NP + ++ HAE+V+V YD ++
Sbjct: 8 LAGGXFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 104 FRQLLEVFW--------------TSHDCRSIIFTNGTEESRLAAHSKEREQMKSKSSIVT 149
+L+ F+ T RS ++ E + A + +REQ K + +V
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLV- 126
Query: 150 TQIQQLVAFYPAEPEHQKFELKRNP 174
+ + L FY AE HQ + L +NP
Sbjct: 127 VENEPLKNFYDAEEYHQDY-LIKNP 150
>pdb|3BQH|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Oxidized Form)
Length = 193
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 20/145 (13%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVIN 103
A G FW EA F ++GVV GYA G+ NP + ++ HAE+V+V YD ++
Sbjct: 7 LAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 66
Query: 104 FRQLLEVFW--------------TSHDCRSIIFTNGTEESRLAAHSKEREQMKSKSSIVT 149
+L+ F+ T RS ++ E + A + +REQ K + +V
Sbjct: 67 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLV- 125
Query: 150 TQIQQLVAFYPAEPEHQKFELKRNP 174
+ + L FY AE HQ + L +NP
Sbjct: 126 VENEPLKNFYDAEEYHQDY-LIKNP 149
>pdb|3BQE|A Chain A, Structure Of The Central Domain (Msra) Of Neisseria
Meningitidis Pilb (Reduced Form)
Length = 194
Score = 64.7 bits (156), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 45/145 (31%), Positives = 69/145 (47%), Gaps = 20/145 (13%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGGSKTNPEFRNLG----DHAESVQVEYDPRVIN 103
A G FW EA F ++GVV GYA G+ NP + ++ HAE+V+V YD ++
Sbjct: 8 LAGGCFWGLEAYFQRIDGVVDAVSGYANGNTKNPSYEDVSYRHTGHAETVKVTYDADKLS 67
Query: 104 FRQLLEVFW--------------TSHDCRSIIFTNGTEESRLAAHSKEREQMKSKSSIVT 149
+L+ F+ T RS ++ E + A + +REQ K + +V
Sbjct: 68 LDDILQYFFRVVDPTSLNKQGNDTGTQYRSGVYYTDPAEKAVIAAALKREQQKYQLPLV- 126
Query: 150 TQIQQLVAFYPAEPEHQKFELKRNP 174
+ + L FY AE HQ + L +NP
Sbjct: 127 VENEPLKNFYDAEEYHQDY-LIKNP 150
>pdb|3E0M|A Chain A, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|B Chain B, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|C Chain C, Crystal Structure Of Fusion Protein Of Msra And Msrb
pdb|3E0M|D Chain D, Crystal Structure Of Fusion Protein Of Msra And Msrb
Length = 313
Score = 62.0 bits (149), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 45/142 (31%), Positives = 73/142 (51%), Gaps = 16/142 (11%)
Query: 48 FALGSFWRSEAVFGCLNGVVRTTVGYAGGS--KTNPEFRNLGDHAESVQVEYDPRVINFR 105
A G FW E F ++GV+ T+VGYA G TN + DHAE+VQV YD + ++ R
Sbjct: 7 LAGGCFWGLEEYFSRISGVLETSVGYANGQVETTNYQLLKETDHAETVQVIYDEKEVSLR 66
Query: 106 QLLEVFWTSHDCRSI---------IFTNGT---EESRL-AAHSKEREQMKSKSSIVTTQI 152
++L ++ D SI + G +E+ L A ++ +EQ + + ++
Sbjct: 67 EILLYYFRVIDPLSINQQGNDRGRQYRTGIYYQDEADLPAIYTVVQEQERMLGRKIAVEV 126
Query: 153 QQLVAFYPAEPEHQKFELKRNP 174
+QL + AE HQ + L++NP
Sbjct: 127 EQLRHYILAEDYHQDY-LRKNP 147
>pdb|3PIN|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Complex With Trx2
Length = 183
Score = 59.3 bits (142), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 49/157 (31%), Positives = 75/157 (47%), Gaps = 28/157 (17%)
Query: 44 KAAVFALGSFWRSEAVF-GCLNG-VVRTTVGYAGGSKTNPE------FRNLG----DHAE 91
K A GSFW +E ++ LN +V + VGYA G ++ + ++ + D AE
Sbjct: 16 KLITLASGSFWGTEHMYRKYLNDRIVDSKVGYANGEESKKDSPSSVSYKRVSGGDTDFAE 75
Query: 92 SVQVEYDPRVINFRQLLEVFWTSHD--------------CRSIIFTNGTEESRLAAHSKE 137
+QV Y+P+VI R+L + F+ HD RS +F + + + A KE
Sbjct: 76 VLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE 135
Query: 138 REQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 174
Q K + I T I+ + FY AE HQ + L +NP
Sbjct: 136 EWQPKWGNKIATV-IEPIKNFYDAEEYHQLY-LDKNP 170
>pdb|3PIL|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Reduced Form
pdb|3PIL|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Reduced Form
Length = 184
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 72/157 (45%), Gaps = 28/157 (17%)
Query: 44 KAAVFALGSFWRSEAVF-GCLNG-VVRTTVGYAGGSKTNPEF-------RNLG---DHAE 91
K A G FW +E ++ LN +V VGYA G ++ + R G D AE
Sbjct: 17 KLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAE 76
Query: 92 SVQVEYDPRVINFRQLLEVFWTSHD--------------CRSIIFTNGTEESRLAAHSKE 137
+QV Y+P+VI R+L + F+ HD RS +F + + + A KE
Sbjct: 77 VLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE 136
Query: 138 REQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 174
Q K + I T I+ + FY AE HQ + L +NP
Sbjct: 137 EWQPKWGNKIATV-IEPIKNFYDAEEYHQLY-LDKNP 171
>pdb|3PIM|A Chain A, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
pdb|3PIM|B Chain B, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
pdb|3PIM|C Chain C, Crystal Structure Of Mxr1 From Saccharomyces Cerevisiae In
Unusual Oxidized Form
Length = 187
Score = 56.6 bits (135), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 50/157 (31%), Positives = 72/157 (45%), Gaps = 28/157 (17%)
Query: 44 KAAVFALGSFWRSEAVF-GCLNG-VVRTTVGYAGGSKTNPEF-------RNLG---DHAE 91
K A G FW +E ++ LN +V VGYA G ++ + R G D AE
Sbjct: 20 KLITLACGCFWGTEHMYRKYLNDRIVDCKVGYANGEESKKDSPSSVSYKRVCGGDTDFAE 79
Query: 92 SVQVEYDPRVINFRQLLEVFWTSHD--------------CRSIIFTNGTEESRLAAHSKE 137
+QV Y+P+VI R+L + F+ HD RS +F + + + A KE
Sbjct: 80 VLQVSYNPKVITLRELTDFFFRIHDPTTSNSQGPDKGTQYRSGLFAHSDADLKELAKIKE 139
Query: 138 REQMKSKSSIVTTQIQQLVAFYPAEPEHQKFELKRNP 174
Q K + I T I+ + FY AE HQ + L +NP
Sbjct: 140 EWQPKWGNKIATV-IEPIKNFYDAEEYHQLY-LDKNP 174
>pdb|4APW|A Chain A, Alp12 Filament Structure
pdb|4APW|B Chain B, Alp12 Filament Structure
pdb|4APW|C Chain C, Alp12 Filament Structure
pdb|4APW|D Chain D, Alp12 Filament Structure
pdb|4APW|E Chain E, Alp12 Filament Structure
pdb|4APW|F Chain F, Alp12 Filament Structure
pdb|4APW|G Chain G, Alp12 Filament Structure
pdb|4APW|H Chain H, Alp12 Filament Structure
pdb|4APW|I Chain I, Alp12 Filament Structure
pdb|4APW|J Chain J, Alp12 Filament Structure
pdb|4APW|K Chain K, Alp12 Filament Structure
pdb|4APW|L Chain L, Alp12 Filament Structure
pdb|4APW|M Chain M, Alp12 Filament Structure
pdb|4APW|N Chain N, Alp12 Filament Structure
pdb|4APW|O Chain O, Alp12 Filament Structure
pdb|4APW|P Chain P, Alp12 Filament Structure
Length = 329
Score = 31.2 bits (69), Expect = 0.56, Method: Compositional matrix adjust.
Identities = 25/79 (31%), Positives = 33/79 (41%), Gaps = 1/79 (1%)
Query: 125 GTEESRLAAHSKEREQMKSKSSIVTTQIQQLVAFY-PAEPEHQKFELKRNPFLIHLMGNL 183
G E++L +K+ K I T+I L Y E K EL +LI G
Sbjct: 15 GKYETKLIGKNKKGTTEDIKRVIFKTKIYNLEDGYIDIEGNSHKIELDGKEYLIGEQGVE 74
Query: 184 PQEELEKSNLAAKLNSYAA 202
E K+NL KL +Y A
Sbjct: 75 DSSETSKTNLIHKLAAYTA 93
>pdb|1C0N|A Chain A, Csdb Protein, Nifs Homologue
Length = 406
Score = 26.9 bits (58), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 14/72 (19%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 90 AESVQVEYDPRVINFRQLLEVFWTSHDCRSIIFTNGTEES-RLAAHSKEREQMKSKSSIV 148
A ++ + ++ N R+ +F + ++F GT E L A+S +++ +I+
Sbjct: 58 AHTLSAQATEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSNVRAGDNII 117
Query: 149 TTQIQQLVAFYP 160
+Q++ P
Sbjct: 118 ISQMEHHANIVP 129
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.134 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,675,025
Number of Sequences: 62578
Number of extensions: 198605
Number of successful extensions: 433
Number of sequences better than 100.0: 20
Number of HSP's better than 100.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 390
Number of HSP's gapped (non-prelim): 21
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 50 (23.9 bits)