Query 026896
Match_columns 231
No_of_seqs 180 out of 1633
Neff 6.8
Searched_HMMs 29240
Date Tue Mar 26 00:54:31 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026896.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026896hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3fh2_A Probable ATP-dependent 100.0 1.7E-29 6E-34 202.1 18.5 143 81-226 3-145 (146)
2 3fes_A ATP-dependent CLP endop 100.0 1.2E-29 4.1E-34 203.0 16.0 142 80-225 3-144 (145)
3 1khy_A CLPB protein; alpha hel 100.0 6.4E-29 2.2E-33 198.0 17.4 146 80-227 1-146 (148)
4 2y1q_A CLPC N-domain, negative 100.0 7.1E-29 2.4E-33 198.3 17.1 145 80-228 1-145 (150)
5 1k6k_A ATP-dependent CLP prote 99.9 7.4E-26 2.5E-30 179.4 14.5 135 85-222 2-139 (143)
6 3zri_A CLPB protein, CLPV; cha 99.9 4.3E-25 1.5E-29 182.1 14.9 148 73-224 12-163 (171)
7 3pxg_A Negative regulator of g 99.9 5.4E-25 1.9E-29 206.1 17.1 143 80-226 1-143 (468)
8 3pxi_A Negative regulator of g 99.9 6.7E-24 2.3E-28 208.6 17.1 143 80-226 1-143 (758)
9 1r6b_X CLPA protein; AAA+, N-t 99.8 2.3E-20 7.7E-25 183.1 15.5 137 85-224 2-141 (758)
10 1qvr_A CLPB protein; coiled co 99.8 4E-20 1.4E-24 184.2 14.1 136 80-225 1-136 (854)
11 3fh2_A Probable ATP-dependent 99.1 2.9E-10 1E-14 90.1 10.2 65 84-148 81-145 (146)
12 3fes_A ATP-dependent CLP endop 99.1 3.3E-10 1.1E-14 89.7 8.3 65 83-147 80-144 (145)
13 1khy_A CLPB protein; alpha hel 98.9 2.8E-09 9.6E-14 83.9 8.8 63 161-224 5-67 (148)
14 2y1q_A CLPC N-domain, negative 98.9 2.7E-09 9.2E-14 84.3 8.7 67 83-149 78-144 (150)
15 3zri_A CLPB protein, CLPV; cha 98.9 2.8E-09 9.6E-14 87.3 8.1 62 161-223 24-85 (171)
16 1k6k_A ATP-dependent CLP prote 98.8 1.4E-08 4.7E-13 79.5 9.2 61 84-144 79-139 (143)
17 3pxg_A Negative regulator of g 98.6 1.1E-07 3.8E-12 88.6 7.9 67 83-149 78-144 (468)
18 3pxi_A Negative regulator of g 98.4 5.3E-07 1.8E-11 88.4 9.6 67 83-149 78-144 (758)
19 1qvr_A CLPB protein; coiled co 98.2 2.1E-06 7.3E-11 85.4 8.1 63 161-224 5-67 (854)
20 1r6b_X CLPA protein; AAA+, N-t 98.0 1E-05 3.5E-10 79.1 8.5 63 84-146 79-141 (758)
21 1f1e_A Histone fold protein; a 93.0 1.1 3.9E-05 35.5 10.6 104 86-197 36-146 (154)
22 2f8n_G Core histone macro-H2A. 72.3 4.2 0.00014 30.8 4.2 39 89-129 57-95 (120)
23 2f8n_G Core histone macro-H2A. 71.9 3.4 0.00012 31.3 3.6 34 166-200 57-90 (120)
24 2nqb_C Histone H2A; nucleosome 71.7 3.4 0.00012 31.4 3.6 34 166-200 58-91 (123)
25 1f66_C Histone H2A.Z; nucleoso 71.3 3.2 0.00011 31.8 3.3 34 166-200 63-96 (128)
26 1tzy_A Histone H2A-IV; histone 70.9 3.6 0.00012 31.6 3.6 34 166-200 60-93 (129)
27 2nqb_C Histone H2A; nucleosome 70.9 4.6 0.00016 30.7 4.2 39 89-129 58-96 (123)
28 1id3_C Histone H2A.1; nucleoso 70.6 3.6 0.00012 31.6 3.5 34 166-200 60-93 (131)
29 1tzy_A Histone H2A-IV; histone 69.9 5 0.00017 30.8 4.2 39 89-129 60-98 (129)
30 1f66_C Histone H2A.Z; nucleoso 69.7 4.2 0.00014 31.1 3.7 33 89-121 63-95 (128)
31 1id3_C Histone H2A.1; nucleoso 69.4 5.1 0.00018 30.8 4.2 40 89-130 60-99 (131)
32 1tzy_D Histone H4-VI; histone- 67.4 6.3 0.00022 28.8 4.1 36 85-120 59-94 (103)
33 2yfw_B Histone H4, H4; cell cy 66.3 6.8 0.00023 28.6 4.1 36 85-120 59-94 (103)
34 2f8n_K Histone H2A type 1; nuc 65.8 5.2 0.00018 31.5 3.6 34 166-200 79-112 (149)
35 1tzy_D Histone H4-VI; histone- 64.2 7.3 0.00025 28.4 4.0 35 163-198 60-94 (103)
36 2yfw_B Histone H4, H4; cell cy 63.5 7.7 0.00026 28.3 4.0 35 163-198 60-94 (103)
37 2f8n_K Histone H2A type 1; nuc 63.2 7.4 0.00025 30.6 4.0 39 89-129 79-117 (149)
38 2jss_A Chimera of histone H2B. 62.0 11 0.00038 30.6 5.1 39 89-129 141-179 (192)
39 2jss_A Chimera of histone H2B. 57.1 9.9 0.00034 30.9 3.9 110 89-200 38-174 (192)
40 1jgs_A Multiple antibiotic res 56.0 30 0.001 24.8 6.3 41 189-229 37-77 (138)
41 1ku5_A HPHA, archaeal histon; 54.9 13 0.00046 24.8 3.7 29 166-195 40-68 (70)
42 1lj9_A Transcriptional regulat 54.7 46 0.0016 24.0 7.1 44 186-229 29-72 (144)
43 3bro_A Transcriptional regulat 53.9 47 0.0016 23.8 7.1 42 188-229 36-79 (141)
44 3cdh_A Transcriptional regulat 53.4 46 0.0016 24.4 7.1 41 189-229 46-86 (155)
45 3s2w_A Transcriptional regulat 53.3 48 0.0016 24.6 7.2 44 186-229 50-93 (159)
46 4hbl_A Transcriptional regulat 51.8 35 0.0012 25.1 6.1 44 186-229 41-84 (149)
47 3g3z_A NMB1585, transcriptiona 51.3 43 0.0015 24.3 6.5 43 187-229 32-74 (145)
48 3bj6_A Transcriptional regulat 51.0 45 0.0015 24.3 6.6 42 188-229 42-83 (152)
49 2fbh_A Transcriptional regulat 50.5 64 0.0022 23.1 7.4 44 186-229 37-81 (146)
50 2heo_A Z-DNA binding protein 1 49.7 20 0.00068 23.5 3.9 29 201-229 26-54 (67)
51 1ku5_A HPHA, archaeal histon; 49.5 17 0.0006 24.2 3.6 31 87-117 38-68 (70)
52 2pex_A Transcriptional regulat 49.2 41 0.0014 24.7 6.2 41 189-229 50-90 (153)
53 2rdp_A Putative transcriptiona 49.2 42 0.0014 24.4 6.2 41 189-229 45-85 (150)
54 1ku9_A Hypothetical protein MJ 48.6 56 0.0019 23.5 6.8 41 189-229 29-70 (152)
55 3bpv_A Transcriptional regulat 48.0 44 0.0015 23.8 6.1 42 188-229 31-72 (138)
56 4esf_A PADR-like transcription 47.9 22 0.00076 26.1 4.3 42 188-229 12-59 (117)
57 3f8b_A Transcriptional regulat 47.7 23 0.00077 25.9 4.3 42 188-229 13-62 (116)
58 2nnn_A Probable transcriptiona 47.0 46 0.0016 23.7 6.0 42 188-229 40-81 (140)
59 3eco_A MEPR; mutlidrug efflux 46.6 57 0.002 23.3 6.5 44 186-229 31-76 (139)
60 3hsr_A HTH-type transcriptiona 45.5 41 0.0014 24.5 5.5 41 189-229 39-79 (140)
61 2qww_A Transcriptional regulat 45.4 47 0.0016 24.3 5.9 42 188-229 43-84 (154)
62 1b67_A Protein (histone HMFA); 44.9 26 0.00089 23.1 3.9 29 167-196 37-65 (68)
63 1n1j_B NF-YC; histone-like PAI 44.3 26 0.0009 25.0 4.1 33 167-200 55-87 (97)
64 2fa5_A Transcriptional regulat 44.0 54 0.0019 24.2 6.2 43 187-229 50-92 (162)
65 1id3_B Histone H4; nucleosome 43.9 25 0.00086 25.5 4.0 35 163-198 59-93 (102)
66 1qbj_A Protein (double-strande 43.8 29 0.00099 24.0 4.1 29 201-229 28-56 (81)
67 3k0l_A Repressor protein; heli 43.8 46 0.0016 24.8 5.7 43 187-229 47-89 (162)
68 1f1e_A Histone fold protein; a 43.7 25 0.00085 27.7 4.1 34 86-119 113-146 (154)
69 2hue_C Histone H4; mini beta s 43.7 24 0.00084 24.5 3.7 36 162-198 40-75 (84)
70 2hr3_A Probable transcriptiona 43.6 39 0.0013 24.5 5.1 41 189-229 38-79 (147)
71 2fbi_A Probable transcriptiona 43.4 29 0.00098 25.0 4.4 42 188-229 38-79 (142)
72 1ub9_A Hypothetical protein PH 43.2 28 0.00096 23.6 4.1 40 190-229 20-59 (100)
73 2gxg_A 146AA long hypothetical 43.1 89 0.003 22.4 7.5 40 189-229 40-79 (146)
74 1sfx_A Conserved hypothetical 43.0 27 0.00092 23.8 4.0 41 189-229 23-63 (109)
75 1sfu_A 34L protein; protein/Z- 42.9 31 0.0011 23.8 4.1 46 185-230 10-59 (75)
76 1tbx_A ORF F-93, hypothetical 42.8 32 0.0011 23.6 4.4 41 189-229 11-55 (99)
77 3fm5_A Transcriptional regulat 42.8 63 0.0021 23.6 6.3 43 187-229 40-83 (150)
78 1s3j_A YUSO protein; structura 42.7 50 0.0017 24.1 5.7 42 188-229 39-80 (155)
79 4g92_C HAPE; transcription fac 41.8 29 0.00098 25.9 4.1 33 167-200 77-109 (119)
80 3nrv_A Putative transcriptiona 41.5 35 0.0012 24.9 4.6 41 189-229 43-83 (148)
81 3l7w_A Putative uncharacterize 41.1 40 0.0014 24.0 4.7 42 188-229 10-55 (108)
82 3tgn_A ADC operon repressor AD 41.0 31 0.0011 25.0 4.3 40 189-229 41-80 (146)
83 3oop_A LIN2960 protein; protei 40.9 52 0.0018 23.8 5.5 40 190-229 41-80 (143)
84 3e6m_A MARR family transcripti 40.7 54 0.0018 24.4 5.7 43 187-229 54-96 (161)
85 1b67_A Protein (histone HMFA); 40.6 32 0.0011 22.6 3.8 26 92-117 39-64 (68)
86 3hhh_A Transcriptional regulat 40.5 34 0.0012 25.1 4.3 42 188-229 14-61 (116)
87 3cjn_A Transcriptional regulat 40.5 41 0.0014 25.0 4.9 42 188-229 54-95 (162)
88 3b0c_W CENP-W, centromere prot 39.7 46 0.0016 22.5 4.6 29 89-117 39-67 (76)
89 2d1h_A ST1889, 109AA long hypo 39.6 38 0.0013 23.1 4.3 41 189-229 24-65 (109)
90 3b0b_C CENP-X, centromere prot 39.6 26 0.00088 24.6 3.3 27 89-115 45-71 (81)
91 3r0a_A Putative transcriptiona 39.6 35 0.0012 24.9 4.3 42 188-229 28-71 (123)
92 3deu_A Transcriptional regulat 39.5 67 0.0023 24.2 6.1 45 185-229 50-97 (166)
93 3kw6_A 26S protease regulatory 39.3 38 0.0013 22.5 4.1 34 163-197 39-72 (78)
94 1taf_A TFIID TBP associated fa 39.0 49 0.0017 22.3 4.5 31 165-196 34-64 (68)
95 1id3_B Histone H4; nucleosome 38.5 37 0.0013 24.6 4.1 36 85-120 58-93 (102)
96 1taf_B TFIID TBP associated fa 38.4 55 0.0019 22.2 4.7 34 84-117 35-68 (70)
97 2hue_C Histone H4; mini beta s 38.2 35 0.0012 23.7 3.8 36 85-120 40-75 (84)
98 2frh_A SARA, staphylococcal ac 38.0 91 0.0031 22.4 6.4 42 188-229 39-82 (127)
99 2a61_A Transcriptional regulat 38.0 33 0.0011 24.8 4.0 42 188-229 35-76 (145)
100 3cuo_A Uncharacterized HTH-typ 38.0 41 0.0014 22.7 4.2 41 189-229 27-67 (99)
101 3bdd_A Regulatory protein MARR 37.8 34 0.0012 24.6 4.0 42 188-229 33-74 (142)
102 2eth_A Transcriptional regulat 37.6 41 0.0014 24.8 4.5 68 161-229 13-87 (154)
103 1taf_B TFIID TBP associated fa 37.1 58 0.002 22.0 4.7 32 163-195 37-68 (70)
104 3b0c_W CENP-W, centromere prot 37.0 47 0.0016 22.5 4.3 30 166-196 39-68 (76)
105 3bja_A Transcriptional regulat 36.9 49 0.0017 23.6 4.7 41 189-229 36-76 (139)
106 4aik_A Transcriptional regulat 36.7 62 0.0021 24.2 5.4 44 186-229 29-75 (151)
107 3ech_A MEXR, multidrug resista 36.7 70 0.0024 23.0 5.6 43 187-229 38-80 (142)
108 1jfi_A Transcription regulator 36.5 19 0.00065 25.9 2.3 33 167-200 47-79 (98)
109 2htj_A P fimbrial regulatory p 36.4 44 0.0015 22.3 4.1 39 191-229 5-43 (81)
110 1qgp_A Protein (double strande 36.0 28 0.00097 23.6 3.0 40 190-229 17-60 (77)
111 3kw6_A 26S protease regulatory 36.0 46 0.0016 22.1 4.1 35 85-119 37-72 (78)
112 1oyi_A Double-stranded RNA-bin 35.9 56 0.0019 22.8 4.6 42 188-229 18-59 (82)
113 2hzt_A Putative HTH-type trans 35.4 55 0.0019 23.0 4.7 39 190-229 18-57 (107)
114 4esb_A Transcriptional regulat 35.4 33 0.0011 25.0 3.5 43 187-229 9-57 (115)
115 3l9f_A Putative uncharacterize 35.1 20 0.00068 29.2 2.4 51 178-229 28-86 (204)
116 1xn7_A Hypothetical protein YH 34.7 79 0.0027 21.5 5.2 42 188-229 4-45 (78)
117 3u0k_A Rcamp; fluorescent prot 34.2 1.3E+02 0.0043 27.6 7.8 36 82-117 293-328 (440)
118 2qvo_A Uncharacterized protein 33.9 43 0.0015 23.0 3.8 43 187-229 13-59 (95)
119 2k02_A Ferrous iron transport 33.7 86 0.0029 22.0 5.3 40 190-229 6-45 (87)
120 3f3x_A Transcriptional regulat 33.0 89 0.003 22.5 5.7 41 188-229 39-79 (144)
121 2nyx_A Probable transcriptiona 33.0 39 0.0013 25.6 3.7 41 189-229 48-88 (168)
122 4g92_C HAPE; transcription fac 33.0 45 0.0015 24.8 3.9 31 91-121 78-108 (119)
123 2xvc_A ESCRT-III, SSO0910; cel 32.9 59 0.002 21.3 3.9 44 185-228 8-53 (59)
124 1jfi_B DR1 protein, transcript 32.3 56 0.0019 26.3 4.6 28 95-122 56-83 (179)
125 4dra_E Centromere protein X; D 32.1 52 0.0018 23.2 3.9 27 89-115 49-75 (84)
126 2fxa_A Protease production reg 32.0 79 0.0027 25.0 5.6 42 188-229 50-91 (207)
127 3u2r_A Regulatory protein MARR 31.4 95 0.0033 23.1 5.8 42 188-229 48-91 (168)
128 1z91_A Organic hydroperoxide r 31.2 38 0.0013 24.5 3.3 41 189-229 43-83 (147)
129 2oqg_A Possible transcriptiona 30.8 64 0.0022 22.4 4.4 40 189-229 24-63 (114)
130 2ly8_A Budding yeast chaperone 30.1 70 0.0024 24.0 4.5 34 164-198 79-112 (121)
131 3b0c_T CENP-T, centromere prot 30.1 56 0.0019 24.0 4.0 34 166-200 41-74 (111)
132 2bv6_A MGRA, HTH-type transcri 29.7 39 0.0013 24.4 3.1 43 187-229 38-80 (142)
133 1n1j_B NF-YC; histone-like PAI 29.6 58 0.002 23.1 3.9 31 91-121 56-86 (97)
134 2cfx_A HTH-type transcriptiona 29.5 68 0.0023 23.7 4.5 39 191-229 10-48 (144)
135 1xmk_A Double-stranded RNA-spe 29.5 51 0.0017 22.7 3.4 39 191-229 16-55 (79)
136 4b8x_A SCO5413, possible MARR- 29.2 1.4E+02 0.0048 21.9 6.3 29 201-229 52-80 (147)
137 2dzn_B 26S protease regulatory 29.2 69 0.0024 21.5 4.1 35 163-198 34-68 (82)
138 2w25_A Probable transcriptiona 29.0 67 0.0023 23.9 4.4 39 191-229 12-50 (150)
139 1n1j_A NF-YB; histone-like PAI 28.9 79 0.0027 22.1 4.5 27 169-196 47-73 (93)
140 3kp7_A Transcriptional regulat 28.6 64 0.0022 23.6 4.2 41 188-229 40-80 (151)
141 1jfi_A Transcription regulator 28.5 30 0.001 24.8 2.1 32 90-121 47-78 (98)
142 3ri2_A Transcriptional regulat 28.5 73 0.0025 23.5 4.5 41 188-229 22-67 (123)
143 3b0c_T CENP-T, centromere prot 28.0 68 0.0023 23.5 4.1 37 86-122 38-74 (111)
144 1hsj_A Fusion protein consisti 27.7 3.1E+02 0.011 24.0 11.5 91 133-229 354-449 (487)
145 3jw4_A Transcriptional regulat 27.6 58 0.002 23.7 3.8 41 189-229 44-86 (148)
146 2pjp_A Selenocysteine-specific 27.4 1.4E+02 0.0048 21.5 5.9 87 124-229 22-109 (121)
147 2dql_A PEX protein; circadian 27.3 65 0.0022 23.4 3.9 42 188-229 22-71 (115)
148 1sd4_A Penicillinase repressor 26.8 61 0.0021 23.0 3.7 41 189-229 13-57 (126)
149 3b0b_C CENP-X, centromere prot 26.7 57 0.002 22.7 3.3 25 167-192 46-70 (81)
150 2fsw_A PG_0823 protein; alpha- 26.5 99 0.0034 21.6 4.8 40 189-229 28-68 (107)
151 1z7u_A Hypothetical protein EF 26.5 87 0.003 22.2 4.5 40 189-229 25-65 (112)
152 2pmy_A RAS and EF-hand domain- 26.3 1.3E+02 0.0043 19.9 5.1 53 160-225 19-71 (91)
153 2dbb_A Putative HTH-type trans 25.8 83 0.0029 23.3 4.4 39 191-229 14-52 (151)
154 2dzn_B 26S protease regulatory 25.6 87 0.003 21.0 4.1 37 84-120 31-68 (82)
155 2y75_A HTH-type transcriptiona 25.2 1.2E+02 0.004 21.9 5.1 28 202-229 28-55 (129)
156 1n1j_A NF-YB; histone-like PAI 24.8 1.1E+02 0.0036 21.4 4.5 35 84-118 27-73 (93)
157 2kko_A Possible transcriptiona 24.8 64 0.0022 22.8 3.4 57 169-229 11-67 (108)
158 4fx0_A Probable transcriptiona 24.6 1.9E+02 0.0067 21.2 6.4 60 166-229 14-81 (148)
159 1xma_A Predicted transcription 24.5 80 0.0027 23.9 4.1 43 187-229 41-91 (145)
160 4dra_E Centromere protein X; D 24.5 85 0.0029 22.0 3.9 26 167-193 50-75 (84)
161 1i1g_A Transcriptional regulat 24.3 75 0.0026 23.1 3.9 39 191-229 9-47 (141)
162 1u2w_A CADC repressor, cadmium 24.2 95 0.0032 22.4 4.4 40 190-229 46-85 (122)
163 1taf_A TFIID TBP associated fa 24.2 1.5E+02 0.005 19.8 4.9 32 86-117 32-63 (68)
164 2pg4_A Uncharacterized protein 24.1 67 0.0023 21.8 3.3 40 190-229 19-60 (95)
165 1bja_A Transcription regulator 23.9 1.3E+02 0.0044 21.5 4.8 44 186-229 16-60 (95)
166 3nqo_A MARR-family transcripti 23.8 78 0.0027 24.5 4.1 41 189-229 44-86 (189)
167 2cg4_A Regulatory protein ASNC 23.6 71 0.0024 23.8 3.7 39 191-229 13-51 (152)
168 2p5v_A Transcriptional regulat 23.6 95 0.0032 23.4 4.4 39 191-229 15-53 (162)
169 1p6r_A Penicillinase repressor 23.6 91 0.0031 20.5 3.9 40 190-229 13-56 (82)
170 3vlf_B 26S protease regulatory 23.4 1.1E+02 0.0039 20.8 4.4 35 163-198 37-71 (88)
171 3tl8_B Effector protein hopab2 23.3 81 0.0028 23.3 3.6 26 124-149 42-67 (117)
172 3vlf_B 26S protease regulatory 23.3 1.2E+02 0.0041 20.7 4.5 33 87-119 38-70 (88)
173 2cyy_A Putative HTH-type trans 23.1 81 0.0028 23.5 3.9 39 191-229 12-50 (151)
174 2byk_A Chrac-16; nucleosome sl 23.0 1.2E+02 0.0041 23.2 4.8 67 41-122 9-88 (140)
175 3jth_A Transcription activator 22.8 91 0.0031 21.2 3.9 39 190-229 27-65 (98)
176 2x4h_A Hypothetical protein SS 22.7 1.3E+02 0.0044 21.6 4.9 29 201-229 32-60 (139)
177 2lnb_A Z-DNA-binding protein 1 22.6 97 0.0033 21.6 3.7 28 201-228 35-62 (80)
178 2lf3_A Effector protein hopab3 22.4 77 0.0026 23.0 3.3 26 124-149 36-61 (107)
179 2e1c_A Putative HTH-type trans 22.3 96 0.0033 23.9 4.3 39 191-229 32-70 (171)
180 2lf6_A Effector protein hopab1 22.1 79 0.0027 22.8 3.3 26 124-149 25-50 (101)
181 3fm5_A Transcriptional regulat 21.5 2.3E+02 0.0079 20.3 8.9 69 111-179 42-117 (150)
182 2krk_A 26S protease regulatory 21.5 1.2E+02 0.0039 20.8 4.1 34 163-197 47-80 (86)
183 1c07_A Protein (epidermal grow 21.4 1.9E+02 0.0066 19.4 5.7 34 162-196 4-37 (95)
184 2g9w_A Conserved hypothetical 21.1 1.2E+02 0.004 22.3 4.4 41 189-229 12-57 (138)
185 3df8_A Possible HXLR family tr 21.1 1.5E+02 0.0052 20.9 4.9 39 190-229 31-72 (111)
186 2lz1_A Nuclear factor erythroi 20.8 73 0.0025 22.7 2.9 39 185-228 34-72 (90)
187 2ia0_A Putative HTH-type trans 20.7 1.1E+02 0.0037 23.6 4.3 39 191-229 22-60 (171)
188 1q1h_A TFE, transcription fact 20.7 99 0.0034 21.5 3.7 40 190-229 22-62 (110)
189 3ksy_A SOS-1, SON of sevenless 20.7 94 0.0032 31.4 4.8 33 89-121 138-170 (1049)
190 1eh2_A EPS15; calcium binding, 20.6 1.6E+02 0.0056 20.7 4.9 35 160-196 7-41 (106)
191 4a5n_A Uncharacterized HTH-typ 20.5 1.4E+02 0.0048 22.2 4.7 41 188-229 28-69 (131)
192 1yyv_A Putative transcriptiona 20.4 1E+02 0.0034 22.8 3.9 39 190-229 39-78 (131)
193 1y0u_A Arsenical resistance op 20.3 96 0.0033 21.1 3.5 38 190-229 35-72 (96)
194 2ly8_A Budding yeast chaperone 20.0 1.6E+02 0.0053 22.1 4.8 38 85-122 77-114 (121)
195 2h09_A Transcriptional regulat 20.0 1.1E+02 0.0037 22.6 4.1 31 199-229 53-83 (155)
No 1
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.97 E-value=1.7e-29 Score=202.11 Aligned_cols=143 Identities=31% Similarity=0.464 Sum_probs=134.6
Q ss_pred CchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHhcCCCCcCCCCCCC
Q 026896 81 KIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERP 160 (231)
Q Consensus 81 ~~~kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L~~~~~~~~~~~~~ 160 (231)
++++||++++++|..|+++|++++|++|++||||+||++++++.+.++|+++|+|++.++.++++.+++.|.. .+..+
T Consensus 3 m~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gv~~~~l~~~l~~~l~~~~~~--~~~~~ 80 (146)
T 3fh2_A 3 MFERFTDRARRVIVLAQEEARMLNHNYIGTEHILLGLIHEGEGVAAKALESMGISLDAVRQEVEEIIGQGSQP--TTGHI 80 (146)
T ss_dssp GGGGBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHCCCSCC--CCSCC
T ss_pred hhhhcCHHHHHHHHHHHHHHHHcCCCCchHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHhccCCCC--CcCCC
Confidence 5889999999999999999999999999999999999999889999999999999999999999999988764 34568
Q ss_pred ccCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhc
Q 026896 161 PLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSS 226 (231)
Q Consensus 161 ~~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~ 226 (231)
++|+.++++|+.|+.+|.++|+ +||+++|||+||++++++.+.++|+++|+|.+.+++.+..+.+
T Consensus 81 ~~s~~~~~vL~~A~~~a~~~~~-~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~g 145 (146)
T 3fh2_A 81 PFTPRAKKVLELSLREGLQMGH-KYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLS 145 (146)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHcCC-CcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 9999999999999999999999 9999999999999988889999999999999999998887654
No 2
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.97 E-value=1.2e-29 Score=203.00 Aligned_cols=142 Identities=25% Similarity=0.323 Sum_probs=132.9
Q ss_pred CCchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHhcCCCCcCCCCCC
Q 026896 80 DKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPER 159 (231)
Q Consensus 80 ~~~~kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L~~~~~~~~~~~~ 159 (231)
.++++||++++++|..|+++|++++|++|++||||+|||.++++.+.++|+++|+|++.++.+++..+++.|. . +..
T Consensus 3 ~~~~~~T~~a~~~l~~A~~~A~~~~~~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~-~--~~~ 79 (145)
T 3fes_A 3 ANFNRFTQRAKKAIDLAFESAKSLGHNIVGSEHILLGLLREEEGIAAKVLSKVGFTEAYLEGKIVDMEGKGEE-I--SED 79 (145)
T ss_dssp -CCCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHCCCSC-C--CSC
T ss_pred CcccccCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCChHHHHHHHcCCCHHHHHHHHHHHHhcCCC-C--CCC
Confidence 4588999999999999999999999999999999999999999999999999999999999999999998776 2 356
Q ss_pred CccCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhh
Q 026896 160 PPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVS 225 (231)
Q Consensus 160 ~~~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~ 225 (231)
+++|+.++++|+.|+.+|+++|+ +||++||||+||+.++++.+.++|+.+|+|.+.+++.+..+.
T Consensus 80 ~~~s~~~~~vl~~A~~~A~~~~~-~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~~~~ 144 (145)
T 3fes_A 80 IVLSPRSKQILELSGMFANKLKT-NYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDMM 144 (145)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCC-CcccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 89999999999999999999999 999999999999999888889999999999999999887653
No 3
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=99.96 E-value=6.4e-29 Score=197.99 Aligned_cols=146 Identities=13% Similarity=0.111 Sum_probs=126.6
Q ss_pred CCchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHhcCCCCcCCCCCC
Q 026896 80 DKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPER 159 (231)
Q Consensus 80 ~~~~kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L~~~~~~~~~~~~ 159 (231)
|++++||++++++|..|+++|++++|++|++||||+|||.++++.+.++|+++|+|++.++.+++..+.+.|...+.+..
T Consensus 1 M~~~~~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~p~~~~~~~~ 80 (148)
T 1khy_A 1 MRLDRLTNKFQLALADAQSLALGHDNQFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQALNRLPQVEGTGGD 80 (148)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHHHTTSCCC------
T ss_pred CChhhhhHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHHHHhCCCCCCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999988876432246
Q ss_pred CccCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcC
Q 026896 160 PPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSR 227 (231)
Q Consensus 160 ~~~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~ 227 (231)
+++|+.++++|+.|+.+|+.+|+ +||+++|||+||+ ++++.+.++|..+|++.+.+++.+..+++.
T Consensus 81 ~~~s~~~~~vl~~A~~~a~~~~~-~~i~~ehlLlall-~~~~~~~~~L~~~gi~~~~l~~~l~~~rg~ 146 (148)
T 1khy_A 81 VQPSQDLVRVLNLCDKLAQKRGD-NFISSELFVLAAL-ESRGTLADILKAAGATTANITQAIEQMRGG 146 (148)
T ss_dssp -CBCHHHHHHHHHHHHHHHHHTC-SSBCHHHHHHHHH-TSCHHHHHHHHHTTCCHHHHHHHHHC----
T ss_pred cCcCHHHHHHHHHHHHHHHHcCC-CeecHHHHHHHHH-cCCcHHHHHHHHcCCCHHHHHHHHHHHHCC
Confidence 88999999999999999999999 9999999999999 456778899999999999999999888753
No 4
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=99.96 E-value=7.1e-29 Score=198.34 Aligned_cols=145 Identities=28% Similarity=0.443 Sum_probs=130.9
Q ss_pred CCchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHhcCCCCcCCCCCC
Q 026896 80 DKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPER 159 (231)
Q Consensus 80 ~~~~kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L~~~~~~~~~~~~ 159 (231)
|++++||++++++|..|+++|++++|++|++||||+|||.++++.+.++|+++|+|++.++.+++..+++.|.. .+.
T Consensus 1 M~~~~~t~~~~~al~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~l~~~~~~---~~~ 77 (150)
T 2y1q_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRAQEM---SQT 77 (150)
T ss_dssp ---CCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHCSSHHHHHHHHTTCCHHHHHHHHHHHHCCC--------C
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCCHHHHHHHHcCCCHHHHHHHHHHHhccCCcc---ccc
Confidence 46789999999999999999999999999999999999999999999999999999999999999999988765 246
Q ss_pred CccCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCC
Q 026896 160 PPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRS 228 (231)
Q Consensus 160 ~~~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~ 228 (231)
+++|+.++++|+.|+.+|+++|+ +||+++|||+||+.++++.+.++|+.+|++.+.+++.+..+++.+
T Consensus 78 ~~~s~~~~~vL~~A~~~A~~~~~-~~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~g~~ 145 (150)
T 2y1q_A 78 IHYTPRAKKVIELSMDEARKLGH-SYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGNN 145 (150)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHHCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCC-CeecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHCCC
Confidence 79999999999999999999999 999999999999998878878999999999999999998887643
No 5
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=99.94 E-value=7.4e-26 Score=179.39 Aligned_cols=135 Identities=21% Similarity=0.227 Sum_probs=122.9
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHhcCC-CCcC-CC-CCCCc
Q 026896 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKS-DLFF-FS-PERPP 161 (231)
Q Consensus 85 fT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L~~~-~~~~-~~-~~~~~ 161 (231)
||++++++|..|+++|+++||++|++||||+|||.++ .+.++|+++|+|++.++.+++..+++. |... +. ...++
T Consensus 2 ~t~~~~~~l~~A~~~A~~~~~~~i~~eHlLlaLl~~~--~~~~iL~~~g~~~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 79 (143)
T 1k6k_A 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSNP--SAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (143)
T ss_dssp BCHHHHHHHHHHHHHHHHHTBSEECHHHHHHHHTTCH--HHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCSSCSCCSCE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHcCc--hHHHHHHHcCCCHHHHHHHHHHHHHhcCCCCCCCCCCCCCC
Confidence 8999999999999999999999999999999999876 389999999999999999999998875 6543 11 24689
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHH
Q 026896 162 LTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAK 222 (231)
Q Consensus 162 ~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~ 222 (231)
+|+.++++|+.|+.+|+++|+ +||+++|||+||+.++++.+.++|+.+|++.+.+++.+.
T Consensus 80 ~s~~~~~~l~~A~~~A~~~~~-~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 80 PTLSFQRVLQRAVFHVQSSGR-NEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp ECHHHHHHHHHHHHHHHSSSC-SCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCC-CccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 999999999999999999999 999999999999998888788999999999999988765
No 6
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=99.93 E-value=4.3e-25 Score=182.05 Aligned_cols=148 Identities=16% Similarity=0.161 Sum_probs=125.0
Q ss_pred CCCCCCC-CCchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHhcCCC
Q 026896 73 KPETASP-DKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSD 151 (231)
Q Consensus 73 ~~~~~~~-~~~~kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L~~~~ 151 (231)
||-..+- +++++||++++++|+.|+++|++++|++|++||||+|||+++++.+.++|+++|+|++.++.+++ .+++.|
T Consensus 12 ~~~~~~l~~~~~kfT~~a~~aL~~A~~~A~~~~h~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~-~l~~~p 90 (171)
T 3zri_A 12 DPIRIELPTLIAKLNAQSKLALEQAASLCIERQHPEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIA-STYSRE 90 (171)
T ss_dssp CSCCCCHHHHHHHBCHHHHHHHHHHHHHHHHHTCSEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH-HHSCCC
T ss_pred CchhhhHHHHHHHcCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHH-HHhcCC
Confidence 4444432 56889999999999999999999999999999999999999999999999999999999999999 999887
Q ss_pred CcCCCCCCCccCHHHHHHHHHHHHHHH-HcCCCCCCCHHHHHHHHhhCCCch-HHHHHHh-CCCCHHHHHHHHHHh
Q 026896 152 LFFFSPERPPLTEQAQRALDWAFNEKL-KSGESGEITTNHLLLGIWSEKESA-GHKILAT-LGFNDEKAKEIAKSV 224 (231)
Q Consensus 152 ~~~~~~~~~~~S~~l~~vLe~A~~~A~-~~g~~~~I~teHLLLALl~d~~~~-~~~iL~~-lGvd~~~l~e~l~~i 224 (231)
.. ....+++|+.++++|+.|+.+|+ ++|+ +||++||||+||++++..+ ...+-.. ..|+.+.+.+.+..+
T Consensus 91 ~~--~~~~~~~S~~l~~vL~~A~~~A~l~~gd-~~I~teHLLLALl~~~~~~~~~~~~~~l~~i~~~~L~~~~~~~ 163 (171)
T 3zri_A 91 QV--LDTYPAFSPLLVELLQEAWLLSSTELEQ-AELRSGAIFLAALTRADRYLSFKLISLFEGINRENLKKHFAMI 163 (171)
T ss_dssp CC--CSSCCEECHHHHHHHHHHHHHHHTTTCC-SSBCHHHHHHHHHHTHHHHSCHHHHHHTTTSCHHHHHHTHHHH
T ss_pred CC--CCCCCCcCHHHHHHHHHHHHHHHHHcCC-CEEcHHHHHHHHHhChhhhHHHHhhHHHHcCCHHHHHHHHHHH
Confidence 64 24568999999999999999999 9999 9999999999999886321 1122222 367888888766544
No 7
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.93 E-value=5.4e-25 Score=206.08 Aligned_cols=143 Identities=29% Similarity=0.444 Sum_probs=132.4
Q ss_pred CCchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHhcCCCCcCCCCCC
Q 026896 80 DKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPER 159 (231)
Q Consensus 80 ~~~~kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L~~~~~~~~~~~~ 159 (231)
|++++||++++++|..|+++|++++|++|++||||+|||.++++.+.++|+++|+|.+.|+.+++..++..+.. ...
T Consensus 1 mm~~~ft~~a~~al~~A~~~A~~~~h~~v~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~---~~~ 77 (468)
T 3pxg_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM---SQT 77 (468)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT---CSS
T ss_pred CcchhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhcccCCC---CCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999877653 235
Q ss_pred CccCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhc
Q 026896 160 PPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSS 226 (231)
Q Consensus 160 ~~~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~ 226 (231)
++||+.++++|+.|+.+|.++|+ ++|+++|||+||+.++++.+.++|..+|++.+++++.+..+.+
T Consensus 78 ~~~S~~~~~vL~~A~~~A~~~g~-~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~ 143 (468)
T 3pxg_A 78 IHYTPRAKKVIELSMDEARKLGH-SYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLG 143 (468)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTC-SSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCC-CeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 88999999999999999999999 9999999999999999999999999999999999998877654
No 8
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.91 E-value=6.7e-24 Score=208.57 Aligned_cols=143 Identities=29% Similarity=0.444 Sum_probs=133.3
Q ss_pred CCchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHhcCCCCcCCCCCC
Q 026896 80 DKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPER 159 (231)
Q Consensus 80 ~~~~kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L~~~~~~~~~~~~ 159 (231)
|++++||++++++|..|+++|++++|++|++||||+|||.++++.+.++|+++|+|.+.|+.+++..+++.+.. +..
T Consensus 1 mm~~~~t~~a~~~l~~A~~~A~~~~h~~i~~eHlLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~~~~---~~~ 77 (758)
T 3pxi_A 1 MMFGRFTERAQKVLALAQEEALRLGHNNIGTEHILLGLVREGEGIAAKALQALGLGSEKIQKEVESLIGRGQEM---SQT 77 (758)
T ss_dssp --CCCBCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSCCSHHHHHHHHHTCCHHHHHHHHHTTSCCCCTT---CSS
T ss_pred CchhhhCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhccCcHHHHHHHHcCCCHHHHHHHHHHHhccCCCC---CCC
Confidence 46889999999999999999999999999999999999999999999999999999999999999999887754 346
Q ss_pred CccCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhc
Q 026896 160 PPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSS 226 (231)
Q Consensus 160 ~~~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~ 226 (231)
++||+.++++|+.|+.+|.++|+ ++|+++|||+||+.++++.+.++|.++|++.+++++.+..+.+
T Consensus 78 ~~~s~~~~~vl~~A~~~A~~~~~-~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~ 143 (758)
T 3pxi_A 78 IHYTPRAKKVIELSMDEARKLGH-SYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLG 143 (758)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTC-SSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCC-CcccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 89999999999999999999999 9999999999999999999999999999999999998887664
No 9
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.84 E-value=2.3e-20 Score=183.12 Aligned_cols=137 Identities=21% Similarity=0.222 Sum_probs=124.0
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHhcC-CCCcCC--CCCCCc
Q 026896 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGK-SDLFFF--SPERPP 161 (231)
Q Consensus 85 fT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L~~-~~~~~~--~~~~~~ 161 (231)
||++++++|..|+++|++++|++|++||||+|||.+ +.+.++|+++|+|.+.++.+++..++. .+...+ ....++
T Consensus 2 ~t~~a~~~l~~A~~~A~~~~h~~i~~eHLLlaLl~~--~~~~~iL~~~gvd~~~l~~~l~~~l~~~~p~~~~~~~~~~~~ 79 (758)
T 1r6b_X 2 LNQELELSLNMAFARAREHRHEFMTVEHLLLALLSN--PSAREALEACSVDLVALRQELEAFIEQTTPVLPASEEERDTQ 79 (758)
T ss_dssp BCHHHHHHHHHHHHHHHHTTBSEECHHHHHHHHTTS--HHHHHHHHHTTCCHHHHHHHHHHHHHHHSCBCCCSSSCCCCE
T ss_pred CCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHcC--cHHHHHHHHcCCCHHHHHHHHHHHHhccCCCCCCccccCCCC
Confidence 899999999999999999999999999999999986 358999999999999999999999976 554322 124689
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHh
Q 026896 162 LTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSV 224 (231)
Q Consensus 162 ~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i 224 (231)
+|+.++++|+.|+.+|+.+|+ ++|+++|||+||+.++++.+.++|..+|++.+.+.+.+...
T Consensus 80 ~s~~~~~vl~~A~~~a~~~~~-~~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~ 141 (758)
T 1r6b_X 80 PTLSFQRVLQRAVFHVQSSGR-NEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHG 141 (758)
T ss_dssp ECHHHHHHHHHHHHHHHHHTC-SSBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC
T ss_pred cCHHHHHHHHHHHHHHHHcCC-CEeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHHHHHHh
Confidence 999999999999999999999 99999999999999988888999999999999998877654
No 10
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.82 E-value=4e-20 Score=184.18 Aligned_cols=136 Identities=16% Similarity=0.116 Sum_probs=120.6
Q ss_pred CCchhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHhcCCCCcCCCCCC
Q 026896 80 DKIPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGKSDLFFFSPER 159 (231)
Q Consensus 80 ~~~~kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L~~~~~~~~~~~~ 159 (231)
|++++||++++++|..|+++|++++|++|++||||+|||.++++.+.++|+++|+|.+.++.+++..+++.+...+.+..
T Consensus 1 ~~~~~~t~~a~~al~~A~~~A~~~~h~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~l~~~p~~~~~~~~ 80 (854)
T 1qvr_A 1 MNLERWTQAAREALAQAQVLAQRMKHQAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERELARLPKVEGAEVG 80 (854)
T ss_dssp ---CCSCHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHHHHTSCCCCGGGTT
T ss_pred CChhhhCHHHHHHHHHHHHHHHHcCCCCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHhhCCCCCCCCCC
Confidence 46789999999999999999999999999999999999999999999999999999999999999999887765332346
Q ss_pred CccCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhh
Q 026896 160 PPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVS 225 (231)
Q Consensus 160 ~~~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~ 225 (231)
+++|+.++++|+.|+.+|+.+|+ +||+++|||+||+.++++. ++.+.+++.+..++
T Consensus 81 ~~~S~~~~~vL~~A~~~a~~~g~-~~I~~ehlLlall~~~~~~---------~~~~~~~~~~~~~~ 136 (854)
T 1qvr_A 81 QYLTSRLSGALNRAEGLMEELKD-RYVAVDTLVLALAEATPGL---------PGLEALKGALKELR 136 (854)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTC-SSCCHHHHHHHHHHHSTTS---------CCHHHHHHHHTSSC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCC-cEeeHHHHHHHHHhccccc---------CCHHHHHHHHHHhc
Confidence 89999999999999999999999 9999999999999876531 78888888776654
No 11
>3fh2_A Probable ATP-dependent protease (heat shock prote; struct genomics, PSI2, MCSG, protein structure initiative; 1.60A {Corynebacterium glutamicum}
Probab=99.13 E-value=2.9e-10 Score=90.07 Aligned_cols=65 Identities=28% Similarity=0.452 Sum_probs=62.2
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHhc
Q 026896 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLG 148 (231)
Q Consensus 84 kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L~ 148 (231)
.||+.++++|+.|..+|+++|+.+|++||||+||+.++++.+.++|+++|+|.+.+++++...++
T Consensus 81 ~~s~~~~~vL~~A~~~a~~~~~~~i~~eHlLlall~~~~~~a~~iL~~~gv~~~~l~~~l~~~~g 145 (146)
T 3fh2_A 81 PFTPRAKKVLELSLREGLQMGHKYIGTEFLLLGLIREGEGVAAQVLVKLGADLPRVRQQVIQLLS 145 (146)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCSSHHHHHHHHHTCCHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHhc
Confidence 59999999999999999999999999999999999988889999999999999999999988775
No 12
>3fes_A ATP-dependent CLP endopeptidase; alpha-helical bundles, structural genomics, PSI-2, protein S initiative; HET: PG4 EPE; 1.82A {Clostridium difficile}
Probab=99.07 E-value=3.3e-10 Score=89.74 Aligned_cols=65 Identities=26% Similarity=0.366 Sum_probs=61.4
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHh
Q 026896 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLL 147 (231)
Q Consensus 83 ~kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L 147 (231)
..||+.++++|..|..+|+++|+.+|++||||+||+.++++.+.++|+++|||.+.+++++.+.+
T Consensus 80 ~~~s~~~~~vl~~A~~~A~~~~~~~v~~eHlLlAll~~~~~~a~~iL~~~gv~~~~l~~~i~~~~ 144 (145)
T 3fes_A 80 IVLSPRSKQILELSGMFANKLKTNYIGTEHILLAIIQEGEGIANKILNYAGVNDRTLAQLTIDMM 144 (145)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHh
Confidence 35999999999999999999999999999999999999888999999999999999999998764
No 13
>1khy_A CLPB protein; alpha helix, chaperone; 1.95A {Escherichia coli} SCOP: a.174.1.1
Probab=98.94 E-value=2.8e-09 Score=83.90 Aligned_cols=63 Identities=21% Similarity=0.190 Sum_probs=59.5
Q ss_pred ccCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHh
Q 026896 161 PLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSV 224 (231)
Q Consensus 161 ~~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i 224 (231)
.||+.++++|+.|..+|.++|+ .+|+++|||+||+.++++.+.++|.++|+|.+.+++.++..
T Consensus 5 ~~t~~~~~~l~~A~~~A~~~~~-~~i~~eHlLlaLl~~~~~~~~~iL~~~g~~~~~l~~~l~~~ 67 (148)
T 1khy_A 5 RLTNKFQLALADAQSLALGHDN-QFIEPLHLMSALLNQEGGSVSPLLTSAGINAGQLRTDINQA 67 (148)
T ss_dssp CBCHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHHTCTTCSHHHHHHHHTCCHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHcCC-CccCHHHHHHHHHcCCCchHHHHHHHcCCCHHHHHHHHHHH
Confidence 5899999999999999999999 99999999999999999999999999999999999877654
No 14
>2y1q_A CLPC N-domain, negative regulator of genetic competence CLPC/MEC; transcription, proteolysis; 1.50A {Bacillus subtilis} PDB: 2y1r_A* 2k77_A
Probab=98.94 E-value=2.7e-09 Score=84.30 Aligned_cols=67 Identities=36% Similarity=0.567 Sum_probs=62.7
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHhcC
Q 026896 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGK 149 (231)
Q Consensus 83 ~kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L~~ 149 (231)
..||+.++++|..|..+|+.+|+.+|++||||+||+.++++.+.++|+.+|++.+.++..+.+..+.
T Consensus 78 ~~~s~~~~~vL~~A~~~A~~~~~~~i~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~~g~ 144 (150)
T 2y1q_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGN 144 (150)
T ss_dssp CEECHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHCCSHHHHHHHHTTCCHHHHHHHHHHHHHC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHHHCC
Confidence 3699999999999999999999999999999999999888888899999999999999999888764
No 15
>3zri_A CLPB protein, CLPV; chaperone, HSP100 proteins, AAA+ proteins, T6SS, secretion,; 1.80A {Vibrio cholerae} PDB: 3zrj_A
Probab=98.91 E-value=2.8e-09 Score=87.30 Aligned_cols=62 Identities=23% Similarity=0.220 Sum_probs=58.9
Q ss_pred ccCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHH
Q 026896 161 PLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKS 223 (231)
Q Consensus 161 ~~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~ 223 (231)
.||+.++++|+.|..+|.++|+ .+|++||||+||++++++.+.++|+++|+|.+.+++.++.
T Consensus 24 kfT~~a~~aL~~A~~~A~~~~h-~~I~~EHLLlaLL~~~~~~a~~iL~~~gvd~~~l~~~l~~ 85 (171)
T 3zri_A 24 KLNAQSKLALEQAASLCIERQH-PEVTLEHYLDVLLDNPLSDVRLVLKQAGLEVDQVKQAIAS 85 (171)
T ss_dssp HBCHHHHHHHHHHHHHHHHHTC-SEECHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HcCHHHHHHHHHHHHHHHHcCC-CcccHHHHHHHHHHccCcHHHHHHHHcCCCHHHHHHHHHH
Confidence 3899999999999999999999 9999999999999999999999999999999999987773
No 16
>1k6k_A ATP-dependent CLP protease ATP-binding subunit CLPA; chaperone, ATPase, adaptor binding, X-RAY, structure, N-domain, hydrolase; 1.80A {Escherichia coli} SCOP: a.174.1.1 PDB: 1r6c_X 1r6o_A* 1r6q_A* 1mg9_B* 1lzw_B* 1mbx_A* 1mbv_A 1mbu_A*
Probab=98.83 E-value=1.4e-08 Score=79.54 Aligned_cols=61 Identities=16% Similarity=0.119 Sum_probs=57.6
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHH
Q 026896 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETL 144 (231)
Q Consensus 84 kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~ 144 (231)
.||+.++++|..|..+|+.+|+.+|++||||+||+.++++.+.++|+++||+.+.+++.+.
T Consensus 79 ~~s~~~~~~l~~A~~~A~~~~~~~i~~ehLLlall~~~~~~~~~iL~~~gi~~~~l~~~i~ 139 (143)
T 1k6k_A 79 QPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFIS 139 (143)
T ss_dssp EECHHHHHHHHHHHHHHHSSSCSCBCHHHHHHHHTTCTTSHHHHHHHHTTCCHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCcCcHHHHHHHHcCCCHHHHHHHHH
Confidence 5999999999999999999999999999999999998888789999999999999998774
No 17
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=98.56 E-value=1.1e-07 Score=88.58 Aligned_cols=67 Identities=36% Similarity=0.564 Sum_probs=62.7
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHhcC
Q 026896 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGK 149 (231)
Q Consensus 83 ~kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L~~ 149 (231)
..||++++++|+.|..+|+++|+.+|++||||+||+.++++.+.++|+++|++.+.++..+...++.
T Consensus 78 ~~~S~~~~~vL~~A~~~A~~~g~~~I~teHLLlaLl~~~~~~a~~iL~~~gv~~~~l~~~i~~~~~~ 144 (468)
T 3pxg_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGS 144 (468)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHHhcccchHHHHHHHcCCCHHHHHHHHHHHhcc
Confidence 4599999999999999999999999999999999999999999999999999999999999876653
No 18
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=98.44 E-value=5.3e-07 Score=88.41 Aligned_cols=67 Identities=36% Similarity=0.564 Sum_probs=63.0
Q ss_pred hhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHHhcC
Q 026896 83 PKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNLLGK 149 (231)
Q Consensus 83 ~kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~L~~ 149 (231)
..||++++++|+.|..+|.++|+.+|++||||+||+.++++.+.++|+++|++.+.+++++...++.
T Consensus 78 ~~~s~~~~~vl~~A~~~A~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gv~~~~l~~~i~~~~~~ 144 (758)
T 3pxi_A 78 IHYTPRAKKVIELSMDEARKLGHSYVGTEHILLGLIREGEGVAARVLNNLGVSLNKARQQVLQLLGS 144 (758)
T ss_dssp CEECHHHHHHHHHHHHHHHTTTCSSBCHHHHHHHHHHTCCSHHHHHHHHTTCCHHHHHHHHHTTCCC
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHHhcCCcHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence 4599999999999999999999999999999999999999999999999999999999999877654
No 19
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=98.22 E-value=2.1e-06 Score=85.36 Aligned_cols=63 Identities=21% Similarity=0.206 Sum_probs=59.3
Q ss_pred ccCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHh
Q 026896 161 PLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSV 224 (231)
Q Consensus 161 ~~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i 224 (231)
.||+.++++|+.|..+|.++|| .+|++||||+||+.++++.+.++|..+|+|.+.+++.++..
T Consensus 5 ~~t~~a~~al~~A~~~A~~~~h-~~i~~eHLLlaLl~~~~~~~~~iL~~~gvd~~~l~~~l~~~ 67 (854)
T 1qvr_A 5 RWTQAAREALAQAQVLAQRMKH-QAIDLPHLWAVLLKDERSLAWRLLEKAGADPKALKELQERE 67 (854)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHCCSSSSHHHHHHHTTSSCHHHHHHHHHHH
T ss_pred hhCHHHHHHHHHHHHHHHHcCC-CCccHHHHHHHHHhCCCcHHHHHHHHcCCCHHHHHHHHHHH
Confidence 4899999999999999999999 99999999999999999999999999999999999877654
No 20
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=98.03 E-value=1e-05 Score=79.10 Aligned_cols=63 Identities=16% Similarity=0.098 Sum_probs=58.9
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHHHcCCChHHHHHHHHHH
Q 026896 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLRANGITLFKVREETLNL 146 (231)
Q Consensus 84 kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~~~gid~~~lr~~l~~~ 146 (231)
.||+.++++|+.|..+|..+|+.+|+++|||+||+.++++.+..+|+++|++.+.+++.+...
T Consensus 79 ~~s~~~~~vl~~A~~~a~~~~~~~I~~ehlLlall~~~~~~a~~~L~~~gi~~~~l~~~i~~~ 141 (758)
T 1r6b_X 79 QPTLSFQRVLQRAVFHVQSSGRNEVTGANVLVAIFSEQESQAAYLLRKHEVSRLDVVNFISHG 141 (758)
T ss_dssp EECHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHTTCTTCHHHHHHHHTTCCHHHHHHHHHTC
T ss_pred CcCHHHHHHHHHHHHHHHHcCCCEeeHHHHHHHHhccccchHHHHHHHcCCCHHHHHHHHHHh
Confidence 599999999999999999999999999999999999988889999999999999988877543
No 21
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=93.01 E-value=1.1 Score=35.47 Aligned_cols=104 Identities=10% Similarity=-0.134 Sum_probs=65.4
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhc--cCCcHHHHHHH--HcCCChHHHHHHHHHHhcCCCCcCC-CCCC-
Q 026896 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGILV--EGTSTTAKFLR--ANGITLFKVREETLNLLGKSDLFFF-SPER- 159 (231)
Q Consensus 86 T~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~--~~~s~a~kiL~--~~gid~~~lr~~l~~~L~~~~~~~~-~~~~- 159 (231)
+.-+..+...|...|...|..+|+.+|+++++=. -++ +.. ...+....|..-+.+. +. ...+. ....
T Consensus 36 ~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~lg~~~-----v~d~~~l~lP~a~V~Ri~k~~-g~-~RVS~~A~~~l 108 (154)
T 1f1e_A 36 PTMAEYVANAAKSVLDASGKKTLMEEHLKALADVLMVEG-----VEDYDGELFGRATVRRILKRA-GI-ERASSDAVDLY 108 (154)
T ss_dssp HHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHHTCTT-----STTCCSCCCCHHHHHHHHHHT-TC-CEECHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhccccc-----CCccccccCCccHHHHHHHHc-CC-ccchHHHHHHH
Confidence 4455567778999999999999999999999922 111 001 1124444444444433 11 11100 0000
Q ss_pred -CccCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhh
Q 026896 160 -PPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWS 197 (231)
Q Consensus 160 -~~~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~ 197 (231)
-.++.=+..+...|..+|...|. ..|+.+|+++|+=.
T Consensus 109 ~~~le~f~~~I~~~A~~~a~ha~R-KTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 109 NKLICRATEELGEKAAEYADEDGR-KTVQGEDVEKAITY 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcCC-CccCHHHHHHHHHh
Confidence 01234456788889999999999 99999999999854
No 22
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=72.27 E-value=4.2 Score=30.79 Aligned_cols=39 Identities=15% Similarity=0.168 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHH
Q 026896 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (231)
Q Consensus 89 a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL 129 (231)
+.++++.|-+.|+..+...|+|+|+-+|+=.++ ....++
T Consensus 57 ~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDe--EL~~Ll 95 (120)
T 2f8n_G 57 TAEILELAVNAARDNKKGRVTPRHILLAVANDE--ELNQLL 95 (120)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSH--HHHHHT
T ss_pred HHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCH--HHHHHh
Confidence 457888999999999999999999999997653 344444
No 23
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=71.90 E-value=3.4 Score=31.31 Aligned_cols=34 Identities=26% Similarity=0.485 Sum_probs=30.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026896 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (231)
Q Consensus 166 l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~ 200 (231)
+.+||+.|...|+..+. ..|+++||-+|+-.|++
T Consensus 57 ~aEIlelAgn~A~~~k~-~rItp~hi~lAI~nDeE 90 (120)
T 2f8n_G 57 TAEILELAVNAARDNKK-GRVTPRHILLAVANDEE 90 (120)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHhhcCC-ceEcHHHHHHHHhcCHH
Confidence 35899999999999999 99999999999988754
No 24
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=71.70 E-value=3.4 Score=31.42 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026896 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (231)
Q Consensus 166 l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~ 200 (231)
+.+||+.|...|...+. ..|+++||-+|+-.|++
T Consensus 58 ~aEIlelAgn~A~~~k~-krItp~hi~lAI~nDeE 91 (123)
T 2nqb_C 58 AAEVLELAGNAARDNKK-TRIIPRHLQLAIRNDEE 91 (123)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHhcCC-ccccHHHHHHHHhccHH
Confidence 46899999999999999 99999999999988754
No 25
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=71.35 E-value=3.2 Score=31.83 Aligned_cols=34 Identities=29% Similarity=0.303 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026896 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (231)
Q Consensus 166 l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~ 200 (231)
+.+||+.|...|...+. ..|+++||-+|+-.|++
T Consensus 63 ~aEIlelAgn~A~~~k~-krItprhi~lAI~nDeE 96 (128)
T 1f66_C 63 TAEVLELAGNASKDLKV-KRITPRHLQLAIRGDEE 96 (128)
T ss_dssp HHHHHHHHHHHHHTTTC-SEECHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHhcCC-CeEcHHHHHHHHhccHH
Confidence 46899999999999999 99999999999988754
No 26
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=70.93 E-value=3.6 Score=31.56 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026896 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (231)
Q Consensus 166 l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~ 200 (231)
+.+||+.|...|...+. ..|.++||-+|+-.|++
T Consensus 60 ~aEIlelAgn~A~~~k~-krItp~hi~lAI~nDeE 93 (129)
T 1tzy_A 60 TAEILELAGNAARDNKK-TRIIPRHLQLAIRNDEE 93 (129)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHHHTSHH
T ss_pred HHHHHHHHHHHHHhcCC-CeEcHHHHHHHHhccHH
Confidence 46899999999999999 99999999999988754
No 27
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=70.92 E-value=4.6 Score=30.66 Aligned_cols=39 Identities=21% Similarity=0.154 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHH
Q 026896 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (231)
Q Consensus 89 a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL 129 (231)
+.++++.|-+.|+..+...|+|+|+-+++=.++ ....++
T Consensus 58 ~aEIlelAgn~A~~~k~krItp~hi~lAI~nDe--EL~~Ll 96 (123)
T 2nqb_C 58 AAEVLELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLL 96 (123)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSH--HHHHHT
T ss_pred HHHHHHHHHHHHHhcCCccccHHHHHHHHhccH--HHHHHh
Confidence 457888999999999999999999999997653 344444
No 28
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=70.60 E-value=3.6 Score=31.61 Aligned_cols=34 Identities=29% Similarity=0.333 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026896 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (231)
Q Consensus 166 l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~ 200 (231)
+.+||+.|...|...+. ..|.++||-+|+-.|++
T Consensus 60 ~aEIlelAgn~A~~~k~-krItp~hI~lAI~nDeE 93 (131)
T 1id3_C 60 AAEILELAGNAARDNKK-TRIIPRHLQLAIRNDDE 93 (131)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHHHTCHH
T ss_pred HHHHHHHHHHHHhhcCC-ceEcHHHHHHHHhccHH
Confidence 46899999999999999 99999999999988754
No 29
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=69.85 E-value=5 Score=30.75 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHH
Q 026896 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (231)
Q Consensus 89 a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL 129 (231)
+.++++.|-+.|+..+...|+|+|+-+++=.++ ....++
T Consensus 60 ~aEIlelAgn~A~~~k~krItp~hi~lAI~nDe--EL~~L~ 98 (129)
T 1tzy_A 60 TAEILELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLL 98 (129)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSH--HHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccH--HHHHHh
Confidence 457889999999999999999999999997653 344444
No 30
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=69.71 E-value=4.2 Score=31.15 Aligned_cols=33 Identities=12% Similarity=0.152 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccC
Q 026896 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (231)
Q Consensus 89 a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~ 121 (231)
+.++++.|-+.|+..+...|+|+|+-+|+-.++
T Consensus 63 ~aEIlelAgn~A~~~k~krItprhi~lAI~nDe 95 (128)
T 1f66_C 63 TAEVLELAGNASKDLKVKRITPRHLQLAIRGDE 95 (128)
T ss_dssp HHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSH
T ss_pred HHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccH
Confidence 458889999999999999999999999997653
No 31
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=69.38 E-value=5.1 Score=30.76 Aligned_cols=40 Identities=20% Similarity=0.143 Sum_probs=32.4
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHHH
Q 026896 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFLR 130 (231)
Q Consensus 89 a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL~ 130 (231)
+.++++.|-+.|+..+...|+|+|+-+|+=.++ ....++.
T Consensus 60 ~aEIlelAgn~A~~~k~krItp~hI~lAI~nDe--EL~~Ll~ 99 (131)
T 1id3_C 60 AAEILELAGNAARDNKKTRIIPRHLQLAIRNDD--ELNKLLG 99 (131)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCH--HHHHHTT
T ss_pred HHHHHHHHHHHHhhcCCceEcHHHHHHHHhccH--HHHHHhc
Confidence 457888999999999999999999999997653 4455553
No 32
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=67.35 E-value=6.3 Score=28.78 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=31.6
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcc
Q 026896 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (231)
Q Consensus 85 fT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~ 120 (231)
+...+.+++..|...|+..+-..|+++|+.+||=..
T Consensus 59 le~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 59 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHc
Confidence 456788899999999999999999999999998544
No 33
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=66.26 E-value=6.8 Score=28.61 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=31.5
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcc
Q 026896 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (231)
Q Consensus 85 fT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~ 120 (231)
+...+.+++..|...|+..+-..|+++|+.+||=..
T Consensus 59 le~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 59 LKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 356778899999999999999999999999998544
No 34
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=65.80 E-value=5.2 Score=31.50 Aligned_cols=34 Identities=26% Similarity=0.322 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026896 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (231)
Q Consensus 166 l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~ 200 (231)
+.+||+.|...|+..+. ..|.++||-+|+-.|++
T Consensus 79 ~aEILelAgn~A~~~kr-krItprhI~lAI~nDeE 112 (149)
T 2f8n_K 79 TAEILELAGNAARDNKK-TRIIPRHLQLAIRNDEE 112 (149)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHSHH
T ss_pred HHHHHHHHHHHHHhcCC-CcCcHHHHHHHHhccHH
Confidence 46899999999999999 99999999999998764
No 35
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=64.20 E-value=7.3 Score=28.42 Aligned_cols=35 Identities=6% Similarity=0.007 Sum_probs=30.0
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhC
Q 026896 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSE 198 (231)
Q Consensus 163 S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d 198 (231)
..-+.+|++.|..+|...+. ..|+++|+.+||=..
T Consensus 60 e~~~~~V~~dA~~~a~hakR-ktIt~~DV~~Alr~~ 94 (103)
T 1tzy_D 60 KVFLENVIRDAVTYTEHAKR-KTVTAMDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCC-CcCCHHHHHHHHHHc
Confidence 34567899999999999999 999999999998654
No 36
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=63.48 E-value=7.7 Score=28.33 Aligned_cols=35 Identities=6% Similarity=0.021 Sum_probs=29.9
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhC
Q 026896 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSE 198 (231)
Q Consensus 163 S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d 198 (231)
..-+.+|++.|..+|...+. ..|+++|+.+||=..
T Consensus 60 e~~~~~V~~dA~~~a~hakR-ktvt~~DV~~Alr~~ 94 (103)
T 2yfw_B 60 KTFLESVIRDAVTYTEHAKR-KTVTSLDVVYALKRQ 94 (103)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC-CcCcHHHHHHHHHHc
Confidence 34567889999999999999 999999999998643
No 37
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=63.19 E-value=7.4 Score=30.58 Aligned_cols=39 Identities=18% Similarity=0.132 Sum_probs=31.7
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHH
Q 026896 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (231)
Q Consensus 89 a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL 129 (231)
+.++++.|-+.|+..+...|+|+|+-+|+=.++ ....+|
T Consensus 79 ~aEILelAgn~A~~~krkrItprhI~lAI~nDe--EL~~Ll 117 (149)
T 2f8n_K 79 TAEILELAGNAARDNKKTRIIPRHLQLAIRNDE--ELNKLL 117 (149)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSH--HHHHHT
T ss_pred HHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccH--HHHHHh
Confidence 457889999999999999999999999997653 344444
No 38
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=61.97 E-value=11 Score=30.57 Aligned_cols=39 Identities=13% Similarity=0.175 Sum_probs=31.6
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCCcHHHHHH
Q 026896 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEGTSTTAKFL 129 (231)
Q Consensus 89 a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~s~a~kiL 129 (231)
+.++++.|-+.|+..+...|+|+|+-+|+=.++ ....++
T Consensus 141 ~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~--eL~~L~ 179 (192)
T 2jss_A 141 TAEVLELAGNAAKDLKVKRITPRHLQLAIRGDD--ELDSLI 179 (192)
T ss_dssp HHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSH--HHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCccCHHHHHHHHhccH--HHHHHH
Confidence 467888999999999999999999999997653 344444
No 39
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=57.09 E-value=9.9 Score=30.88 Aligned_cols=110 Identities=16% Similarity=0.044 Sum_probs=65.0
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHh-ccCCcHHH-------HHHH-------------HcC--CChHHHHHHHHH
Q 026896 89 AIRSFAMAELEARKLKYPNTGTEAFLMGIL-VEGTSTTA-------KFLR-------------ANG--ITLFKVREETLN 145 (231)
Q Consensus 89 a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL-~~~~s~a~-------kiL~-------------~~g--id~~~lr~~l~~ 145 (231)
+.++-..|..+++..+...+++..+-.++= --+..++. +.+. ++| +....+...+.+
T Consensus 38 ~~rIa~eA~~L~~~~~r~Tit~~eIq~Avrl~lpgeLak~Av~eG~kAv~k~~~sk~~~s~s~ragl~fPv~ri~R~lk~ 117 (192)
T 2jss_A 38 FERIATEASKLAAYNKKSTISAREIQTAVRLILPGELAKHAVSEGTRAVTKYSSSTQAQSSSARAGLQFPVGRIKRYLKR 117 (192)
T ss_dssp HHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHCSSSCHHHHSSCCSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhhccccccccccccCCCcCCHHHHHHHHHh
Confidence 444556677777778888999999886651 11111221 1221 123 334555555544
Q ss_pred HhcCCCCcCCCCCCCccCHH----HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026896 146 LLGKSDLFFFSPERPPLTEQ----AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (231)
Q Consensus 146 ~L~~~~~~~~~~~~~~~S~~----l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~ 200 (231)
.-...... +....++++.- +.++|+.|...|...+. ..|+++||-+|+-.|++
T Consensus 118 ~~~a~~Rv-~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~-~~I~p~~i~lAi~nD~e 174 (192)
T 2jss_A 118 HATGRTRV-GSKAAIYLTAVLEYLTAEVLELAGNAAKDLKV-KRITPRHLQLAIRGDDE 174 (192)
T ss_dssp TTCSSCCC-CTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTC-SSCCHHHHHHHHHTSHH
T ss_pred cCcccccc-ccChHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CccCHHHHHHHHhccHH
Confidence 32211111 11111233322 47899999999999999 99999999999998754
No 40
>1jgs_A Multiple antibiotic resistance protein MARR; transcription regulation, DNA-binding, repressor, transcription; HET: SAL; 2.30A {Escherichia coli} SCOP: a.4.5.28
Probab=55.97 E-value=30 Score=24.85 Aligned_cols=41 Identities=7% Similarity=0.071 Sum_probs=32.4
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-++|..|...+......+-..+|++...+...++.+.+.||
T Consensus 37 ~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gl 77 (138)
T 1jgs_A 37 FKVLCSIRCAACITPVELKKVLSVDLGALTRMLDRLVCKGW 77 (138)
T ss_dssp HHHHHHHHHHSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHCCChHHHHHHHHHHHHCCC
Confidence 34566666655556677888899999999999999988886
No 41
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=54.86 E-value=13 Score=24.80 Aligned_cols=29 Identities=17% Similarity=0.163 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 026896 166 AQRALDWAFNEKLKSGESGEITTNHLLLGI 195 (231)
Q Consensus 166 l~~vLe~A~~~A~~~g~~~~I~teHLLLAL 195 (231)
+..+++.|..+|...|. ..|+.+|+.+|+
T Consensus 40 ~~~v~~dA~~~a~hakR-kTI~~~DV~lA~ 68 (70)
T 1ku5_A 40 AIEIAKKAVEFARHAGR-KTVKVEDIKLAI 68 (70)
T ss_dssp HHHHHHHHHHHHHTTTC-SEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CcCCHHHHHHHH
Confidence 56788899999999999 999999999986
No 42
>1lj9_A Transcriptional regulator SLYA; HTH DNA binding protein, structural genomics, PSI, protein structure initiative; 1.60A {Enterococcus faecalis} SCOP: a.4.5.28
Probab=54.69 E-value=46 Score=24.03 Aligned_cols=44 Identities=11% Similarity=0.138 Sum_probs=35.5
Q ss_pred CCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 186 ITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 186 I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
..--++|..|...+......+-..+|++...+...++.+.+.||
T Consensus 29 ~~~~~iL~~l~~~~~~t~~~la~~l~~s~~~vs~~l~~Le~~gl 72 (144)
T 1lj9_A 29 RGQYLYLVRVCENPGIIQEKIAELIKVDRTTAARAIKRLEEQGF 72 (144)
T ss_dssp TTHHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCcCcCHHHHHHHHCCCHhHHHHHHHHHHHCCC
Confidence 44556777777766566778888899999999999999988876
No 43
>3bro_A Transcriptional regulator; helix_TURN_helix, multiple antibiotic resistance protein (MA structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.04A {Oenococcus oeni} SCOP: a.4.5.28
Probab=53.91 E-value=47 Score=23.77 Aligned_cols=42 Identities=7% Similarity=0.100 Sum_probs=33.2
Q ss_pred HHHHHHHHhhCC--CchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEK--ESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~--~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
--++|..|...+ ......+-..+|++...+...++.+.+.||
T Consensus 36 ~~~iL~~l~~~~~~~~~~~ela~~l~~~~~tvs~~l~~Le~~Gl 79 (141)
T 3bro_A 36 QMTIIDYLSRNKNKEVLQRDLESEFSIKSSTATVLLQRMEIKKL 79 (141)
T ss_dssp HHHHHHHHHHTTTSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCCCcchHHHHHHHHHHCCC
Confidence 344666777665 456778888899999999999999988876
No 44
>3cdh_A Transcriptional regulator, MARR family; helix-turn-hleix, structura genomics, PSI-2, protein structure initiative; 2.69A {Silicibacter pomeroyi dss-3}
Probab=53.39 E-value=46 Score=24.44 Aligned_cols=41 Identities=7% Similarity=0.084 Sum_probs=32.2
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-.+|..|...+......+-..+|++...+...++.+-+.||
T Consensus 46 ~~iL~~l~~~~~~t~~ela~~l~i~~~tvs~~l~~Le~~Gl 86 (155)
T 3cdh_A 46 WRVLACLVDNDAMMITRLAKLSLMEQSRMTRIVDQMDARGL 86 (155)
T ss_dssp HHHHHHHSSCSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 34555555555566778888999999999999999988887
No 45
>3s2w_A Transcriptional regulator, MARR family; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics; 2.45A {Methanosarcina mazei}
Probab=53.31 E-value=48 Score=24.60 Aligned_cols=44 Identities=9% Similarity=0.176 Sum_probs=36.5
Q ss_pred CCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 186 ITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 186 I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
..--++|..|...+......+-..+|++...+...++.+-+.||
T Consensus 50 ~~q~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Gl 93 (159)
T 3s2w_A 50 SGQFPFLMRLYREDGINQESLSDYLKIDKGTTARAIQKLVDEGY 93 (159)
T ss_dssp TTTHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 44467777887777667778888899999999999999998887
No 46
>4hbl_A Transcriptional regulator, MARR family; HTH, transcription factor, DNA binding; 2.50A {Staphylococcus epidermidis}
Probab=51.81 E-value=35 Score=25.14 Aligned_cols=44 Identities=14% Similarity=0.306 Sum_probs=35.5
Q ss_pred CCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 186 ITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 186 I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
..--++|..|...+......+-..+|++...+...++.+-+.||
T Consensus 41 ~~q~~iL~~l~~~~~~~~~eLa~~l~~~~~~vs~~l~~L~~~Gl 84 (149)
T 4hbl_A 41 YSQYLVMLTLWEENPQTLNSIGRHLDLSSNTLTPMLKRLEQSGW 84 (149)
T ss_dssp HHHHHHHHHHHHSSSEEHHHHHHHHTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 44456677777777667778888899999999999999988876
No 47
>3g3z_A NMB1585, transcriptional regulator, MARR family; transcription factor, structur genomics, oxford protein production facility; 2.10A {Neisseria meningitidis serogroup B}
Probab=51.26 E-value=43 Score=24.32 Aligned_cols=43 Identities=9% Similarity=0.155 Sum_probs=34.2
Q ss_pred CHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 187 TTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 187 ~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.--++|..|...+......+-..+|++...+...++.+-+.||
T Consensus 32 ~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Gl 74 (145)
T 3g3z_A 32 NLFAVLYTLATEGSRTQKHIGEKWSLPKQTVSGVCKTLAGQGL 74 (145)
T ss_dssp HHHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 3345666666666667778888899999999999999988887
No 48
>3bj6_A Transcriptional regulator, MARR family; helix-turn-helix, trasnscription regulator, STR genomics, PSI-2, protein structure initiative; 2.01A {Silicibacter pomeroyi dss-3}
Probab=51.01 E-value=45 Score=24.30 Aligned_cols=42 Identities=14% Similarity=0.177 Sum_probs=33.2
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
--.+|..|...+......+-..+|++...+...++.+-+.||
T Consensus 42 ~~~iL~~l~~~~~~t~~ela~~l~~~~~~vs~~l~~Le~~Gl 83 (152)
T 3bj6_A 42 QRAILEGLSLTPGATAPQLGAALQMKRQYISRILQEVQRAGL 83 (152)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 445666666656566778888899999999999999988876
No 49
>2fbh_A Transcriptional regulator PA3341; MARR, transcription regulator, APC5857, structural genomics, protein structure initiative; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=50.52 E-value=64 Score=23.13 Aligned_cols=44 Identities=9% Similarity=0.189 Sum_probs=34.1
Q ss_pred CCHHHHHHHH-hhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 186 ITTNHLLLGI-WSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 186 I~teHLLLAL-l~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
..--++|..| ...+......+-..+|++...+...++.+-+.||
T Consensus 37 ~~~~~iL~~l~~~~~~~t~~~la~~l~~s~~~vs~~l~~L~~~gl 81 (146)
T 2fbh_A 37 QARWLVLLHLARHRDSPTQRELAQSVGVEGPTLARLLDGLESQGL 81 (146)
T ss_dssp TTHHHHHHHHHHCSSCCBHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCC
Confidence 4455667776 4555566778888899999999999999988876
No 50
>2heo_A Z-DNA binding protein 1; protein DLM1-Z-DNA complex, immune system-DNA complex; 1.70A {Mus musculus} PDB: 1j75_A
Probab=49.69 E-value=20 Score=23.54 Aligned_cols=29 Identities=3% Similarity=0.038 Sum_probs=25.5
Q ss_pred chHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 201 SAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 201 ~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
..+.++-+.+|++...+.+.++.+.+.||
T Consensus 26 ~s~~eLA~~lglsr~tv~~~l~~L~~~G~ 54 (67)
T 2heo_A 26 VAIFQLVKKCQVPKKTLNQVLYRLKKEDR 54 (67)
T ss_dssp EEHHHHHHHHCSCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence 45667888899999999999999999887
No 51
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=49.51 E-value=17 Score=24.21 Aligned_cols=31 Identities=23% Similarity=0.054 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 026896 87 ARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (231)
Q Consensus 87 ~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaL 117 (231)
.-+.+++..|...|...|-..|+++++.+++
T Consensus 38 ~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~ 68 (70)
T 1ku5_A 38 EYAIEIAKKAVEFARHAGRKTVKVEDIKLAI 68 (70)
T ss_dssp HHHHHHHHHHHHHHHTTTCSEECHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCCCcCCHHHHHHHH
Confidence 4455677788899999999999999999986
No 52
>2pex_A Transcriptional regulator OHRR; transcription regulator; 1.90A {Xanthomonas campestris} PDB: 2pfb_A
Probab=49.20 E-value=41 Score=24.67 Aligned_cols=41 Identities=15% Similarity=0.261 Sum_probs=32.6
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-.+|..|...+......+-..+|++...+...++.+.+.||
T Consensus 50 ~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~gl 90 (153)
T 2pex_A 50 YLVMLVLWETDERSVSEIGERLYLDSATLTPLLKRLQAAGL 90 (153)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCC
Confidence 34566666656566778888899999999999999988886
No 53
>2rdp_A Putative transcriptional regulator MARR; PFAM PF01047, winged-helix binding motif, structural genomics, PSI-2; 2.30A {Geobacillus stearothermophilus}
Probab=49.16 E-value=42 Score=24.41 Aligned_cols=41 Identities=5% Similarity=0.016 Sum_probs=32.7
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-++|..|...+......+-..+|++...+...++.+-+.||
T Consensus 45 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gl 85 (150)
T 2rdp_A 45 FVALQWLLEEGDLTVGELSNKMYLACSTTTDLVDRMERNGL 85 (150)
T ss_dssp HHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCC
Confidence 34666666655566678888899999999999999988876
No 54
>1ku9_A Hypothetical protein MJ223; putative transcription factor, homodimeric winged-helix fold, structural genomics, PSI; 2.80A {Methanocaldococcus jannaschii} SCOP: a.4.5.36
Probab=48.63 E-value=56 Score=23.47 Aligned_cols=41 Identities=12% Similarity=0.169 Sum_probs=31.5
Q ss_pred HHHHHHHh-hCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIW-SEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl-~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
..+|..|+ .++......+-..+|++...+...++.+.+.||
T Consensus 29 ~~il~~L~~~~~~~t~~ela~~l~~~~stvs~~l~~L~~~G~ 70 (152)
T 1ku9_A 29 GAVYAILYLSDKPLTISDIMEELKISKGNVSMSLKKLEELGF 70 (152)
T ss_dssp HHHHHHHHHCSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 34454553 345566778889999999999999999988887
No 55
>3bpv_A Transcriptional regulator; MARR, DNA binding, transcription factor, winged helix motif, DNA-binding; 1.40A {Methanobacterium thermoautotrophicum} PDB: 3bpx_A*
Probab=47.99 E-value=44 Score=23.83 Aligned_cols=42 Identities=10% Similarity=0.131 Sum_probs=33.2
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
--.+|..|...+......+-+.+|++...+...++.+.+.||
T Consensus 31 ~~~iL~~l~~~~~~~~~ela~~l~~s~~tvs~~l~~L~~~gl 72 (138)
T 3bpv_A 31 QVACLLRIHREPGIKQDELATFFHVDKGTIARTLRRLEESGF 72 (138)
T ss_dssp HHHHHHHHHHSTTCBHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 344566666665566778888899999999999999988876
No 56
>4esf_A PADR-like transcriptional regulator; PADR family, DNA binding protein, HTH fold; 2.20A {Bacillus cereus}
Probab=47.88 E-value=22 Score=26.09 Aligned_cols=42 Identities=19% Similarity=0.211 Sum_probs=34.0
Q ss_pred HHHHHHHHhhCCCchHHHHHHhC------CCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATL------GFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~l------Gvd~~~l~e~l~~i~~~~~ 229 (231)
.+.++|+++.+...++..+.+.+ +++...+...++.+.+.||
T Consensus 12 l~~~IL~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~Gl 59 (117)
T 4esf_A 12 LEGCVLEIISRRETYGYEITRHLNDLGFTEVVEGTVYTILVRLEKKKL 59 (117)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHHHTCTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCC
Confidence 46778888887777777777765 7899999999999888775
No 57
>3f8b_A Transcriptional regulator, PADR-like family; winged helix turn helix, transcription regulator; 2.00A {Lactococcus lactis subsp} SCOP: a.4.5.0 PDB: 3f8c_A* 3f8f_A*
Probab=47.74 E-value=23 Score=25.88 Aligned_cols=42 Identities=19% Similarity=0.257 Sum_probs=33.2
Q ss_pred HHHHHHHHhhCCCchHHHHHHhC--------CCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATL--------GFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~l--------Gvd~~~l~e~l~~i~~~~~ 229 (231)
.+.++|+++.+.+.++..+.+.+ +++...+...++.+.+.||
T Consensus 13 l~~~IL~~L~~~~~~Gyei~~~l~~~~~~~~~i~~gtly~~L~rLe~~Gl 62 (116)
T 3f8b_A 13 TNVILLNVLKQGDNYVYGIIKQVKEASNGEMELNEATLYTIFKRLEKDGI 62 (116)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHHHHTTTCCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHhCCCCCCCcchHHHHHHHHHHCCC
Confidence 46678888877777776666554 7999999999999988876
No 58
>2nnn_A Probable transcriptional regulator; structural genomics, PSI-2, protein structure initiative, M center for structural genomics, MCSG; 2.40A {Pseudomonas aeruginosa}
Probab=46.99 E-value=46 Score=23.73 Aligned_cols=42 Identities=7% Similarity=0.091 Sum_probs=33.5
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
--.+|..|...+......+-..+|++...+...++.+.+.||
T Consensus 40 ~~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~L~~~gl 81 (140)
T 2nnn_A 40 QWAALVRLGETGPCPQNQLGRLTAMDAATIKGVVERLDKRGL 81 (140)
T ss_dssp HHHHHHHHHHHSSBCHHHHHHHTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 344666666655566778888999999999999999988886
No 59
>3eco_A MEPR; mutlidrug efflux pump regulator winged helix-turn-helix motif, DNA-binding, transcription, transcription regulation; 2.40A {Staphylococcus aureus} SCOP: a.4.5.0
Probab=46.62 E-value=57 Score=23.34 Aligned_cols=44 Identities=9% Similarity=0.154 Sum_probs=34.1
Q ss_pred CCHHHHHHHHhhCC--CchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 186 ITTNHLLLGIWSEK--ESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 186 I~teHLLLALl~d~--~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
..--++|..|...+ ......+-..+|++...+...++.+.+.||
T Consensus 31 ~~~~~vL~~l~~~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gl 76 (139)
T 3eco_A 31 NEQGHTLGYLYAHQQDGLTQNDIAKALQRTGPTVSNLLRNLERKKL 76 (139)
T ss_dssp HHHHHHHHHHHHSTTTCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhcCCCCcCHHHHHHHhCCCcccHHHHHHHHHHCCC
Confidence 33455666676654 456678888899999999999999998887
No 60
>3hsr_A HTH-type transcriptional regulator SARZ; helix-turn-helix, cysteine disulfide, MARR-family transcript regulator, DNA-binding; 1.90A {Staphylococcus aureus subsp} PDB: 3hse_A 3hrm_A 4gxo_A
Probab=45.47 E-value=41 Score=24.46 Aligned_cols=41 Identities=12% Similarity=0.191 Sum_probs=32.4
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-++|..|...+......+-..+|+++..+...++.+-+.||
T Consensus 39 ~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Gl 79 (140)
T 3hsr_A 39 YIVLMAIENDEKLNIKKLGERVFLDSGTLTPLLKKLEKKDY 79 (140)
T ss_dssp HHHHHHSCTTCEEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCC
Confidence 34555665555566678888899999999999999998887
No 61
>2qww_A Transcriptional regulator, MARR family; YP_013417.1, multiple antibiotic-resistance repressor (MARR) structural genomics; HET: MSE; 2.07A {Listeria monocytogenes str}
Probab=45.40 E-value=47 Score=24.33 Aligned_cols=42 Identities=12% Similarity=0.026 Sum_probs=34.4
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
--++|..|...+......+-..+|++...+...++.+-+.||
T Consensus 43 ~~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Gl 84 (154)
T 2qww_A 43 QLAMINVIYSTPGISVADLTKRLIITGSSAAANVDGLISLGL 84 (154)
T ss_dssp HHHHHHHHHHSTTEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 345677777766667778888999999999999999988886
No 62
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=44.91 E-value=26 Score=23.07 Aligned_cols=29 Identities=14% Similarity=0.076 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHh
Q 026896 167 QRALDWAFNEKLKSGESGEITTNHLLLGIW 196 (231)
Q Consensus 167 ~~vLe~A~~~A~~~g~~~~I~teHLLLALl 196 (231)
..+.+.|+..|...+. ..|..+|+.+|+=
T Consensus 37 ~~l~~~A~~~a~~~kR-kTI~~~Di~~A~~ 65 (68)
T 1b67_A 37 EEIASEAVKLAKHAGR-KTIKAEDIELARK 65 (68)
T ss_dssp HHHHHHHHHHHHHTTC-SEECHHHHHHHGG
T ss_pred HHHHHHHHHHHHHcCC-CccCHHHHHHHHH
Confidence 4566777888888888 8999999999973
No 63
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=44.27 E-value=26 Score=25.03 Aligned_cols=33 Identities=9% Similarity=0.037 Sum_probs=28.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026896 167 QRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (231)
Q Consensus 167 ~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~ 200 (231)
..+.+.|+..|...+. ..|...||..|+-.++.
T Consensus 55 ~~l~~~A~~~a~~~kr-ktI~~~di~~Av~~~e~ 87 (97)
T 1n1j_B 55 TELTLRAWIHTEDNKR-RTLQRNDIAMAITKFDQ 87 (97)
T ss_dssp HHHHHHHHHHHHHTTC-SEECHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHHcCC-ccCCHHHHHHHHhcCcH
Confidence 5678889999988888 89999999999987753
No 64
>2fa5_A Transcriptional regulator MARR/EMRR family; multiple antibiotics resistance repressor, XCC structural genomics, X-RAY diffraction; 1.80A {Xanthomonas campestris}
Probab=44.01 E-value=54 Score=24.19 Aligned_cols=43 Identities=5% Similarity=0.039 Sum_probs=34.3
Q ss_pred CHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 187 TTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 187 ~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.--.+|..|...+......+-..+|++...+...++.+.+.||
T Consensus 50 ~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~gl 92 (162)
T 2fa5_A 50 PEWRVITILALYPGSSASEVSDRTAMDKVAVSRAVARLLERGF 92 (162)
T ss_dssp HHHHHHHHHHHSTTCCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 3455677777666666677888899999999999999988886
No 65
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=43.87 E-value=25 Score=25.53 Aligned_cols=35 Identities=3% Similarity=0.011 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhC
Q 026896 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSE 198 (231)
Q Consensus 163 S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d 198 (231)
..-+..|++.|..++...+. ..|+++++.+||=..
T Consensus 59 e~fi~~I~~dA~~~a~HakR-KTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 59 KSFLESVIRDSVTYTEHAKR-KTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHcCC-CcCcHHHHHHHHHHc
Confidence 45567788899999999999 999999999998654
No 66
>1qbj_A Protein (double-stranded RNA specific adenosine D (ADAR1)); protein-Z-DNA complex, hydrolase-DNA complex; HET: DNA; 2.10A {Homo sapiens} SCOP: a.4.5.19 PDB: 3f21_A* 3f22_A* 3f23_A* 3irr_A* 3irq_D* 2gxb_A 2acj_A 2l54_A
Probab=43.84 E-value=29 Score=23.98 Aligned_cols=29 Identities=14% Similarity=0.314 Sum_probs=25.1
Q ss_pred chHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 201 SAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 201 ~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
..+.++-+.+|++...+.+.|..+.+.|+
T Consensus 28 ~t~~eLA~~Lgvsr~tV~~~L~~Le~~G~ 56 (81)
T 1qbj_A 28 TTAHDLSGKLGTPKKEINRVLYSLAKKGK 56 (81)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 46678888999999999999999988776
No 67
>3k0l_A Repressor protein; helix-turn-helix, structural genomics, PSI-2, protein structure initiative, midwest center for structural genomics, MCSG; 2.35A {Acinetobacter SP}
Probab=43.83 E-value=46 Score=24.83 Aligned_cols=43 Identities=9% Similarity=0.076 Sum_probs=34.4
Q ss_pred CHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 187 TTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 187 ~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.--++|..|...+......+-..+|++...+-..++.+.+.||
T Consensus 47 ~q~~iL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Gl 89 (162)
T 3k0l_A 47 PQFTALSVLAAKPNLSNAKLAERSFIKPQSANKILQDLLANGW 89 (162)
T ss_dssp HHHHHHHHHHHCTTCCHHHHHHHHTSCGGGHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCcC
Confidence 3345666666666667778888899999999999999998887
No 68
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=43.74 E-value=25 Score=27.65 Aligned_cols=34 Identities=12% Similarity=-0.184 Sum_probs=29.0
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhc
Q 026896 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGILV 119 (231)
Q Consensus 86 T~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~ 119 (231)
+.-+.++...|...|...+...|+++|+++++=.
T Consensus 113 e~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~ 146 (154)
T 1f1e_A 113 CRATEELGEKAAEYADEDGRKTVQGEDVEKAITY 146 (154)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 4556677788999999999999999999999853
No 69
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=43.72 E-value=24 Score=24.53 Aligned_cols=36 Identities=8% Similarity=0.044 Sum_probs=30.5
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhC
Q 026896 162 LTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSE 198 (231)
Q Consensus 162 ~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d 198 (231)
+..-+..+++.|..++...|. ..|+++++.+||=..
T Consensus 40 l~~~~~~I~~dA~~~a~ha~R-KTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 40 LKVFLENVIRDAVTYTEHAKR-KTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCC-CcCcHHHHHHHHHHc
Confidence 345678899999999999999 999999999998643
No 70
>2hr3_A Probable transcriptional regulator; MCSG, structural genomics, PSI-2, protein structure initiati midwest center for structural genomics; 2.40A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=43.62 E-value=39 Score=24.54 Aligned_cols=41 Identities=7% Similarity=0.032 Sum_probs=32.9
Q ss_pred HHHHHHHhh-CCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWS-EKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~-d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-++|..|.. .+......+-..+|++...+...++.+.+.||
T Consensus 38 ~~iL~~l~~~~~~~~~~~la~~l~i~~~~vs~~l~~Le~~gl 79 (147)
T 2hr3_A 38 LVVLGAIDRLGGDVTPSELAAAERMRSSNLAALLRELERGGL 79 (147)
T ss_dssp HHHHHHHHHTTSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCCCHHHHHHHhCCChhhHHHHHHHHHHCCC
Confidence 346666666 55566778888999999999999999988886
No 71
>2fbi_A Probable transcriptional regulator; MARR, APC5816, structural genomic protein structure initiative; 2.10A {Pseudomonas aeruginosa} SCOP: a.4.5.28
Probab=43.43 E-value=29 Score=24.99 Aligned_cols=42 Identities=2% Similarity=-0.035 Sum_probs=33.6
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
--.+|..|...+......+-..+|++...+...++.+.+.||
T Consensus 38 ~~~iL~~l~~~~~~t~~ela~~l~~s~~~vs~~l~~Le~~gl 79 (142)
T 2fbi_A 38 QWRVIRILRQQGEMESYQLANQACILRPSMTGVLARLERDGI 79 (142)
T ss_dssp HHHHHHHHHHHCSEEHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCHhHHHHHHHHHHHCCC
Confidence 344666666655567778888999999999999999988886
No 72
>1ub9_A Hypothetical protein PH1061; helix-turn-helix motif, winged helix motif, structural genom transcription; 2.05A {Pyrococcus horikoshii} SCOP: a.4.5.28
Probab=43.16 E-value=28 Score=23.60 Aligned_cols=40 Identities=5% Similarity=0.125 Sum_probs=31.5
Q ss_pred HHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 190 HLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 190 HLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.+|..|...+.....++-+.+|++...+...++.+.+.||
T Consensus 20 ~iL~~L~~~~~~~~~ela~~l~is~~tvs~~l~~L~~~gl 59 (100)
T 1ub9_A 20 GIMIFLLPRRKAPFSQIQKVLDLTPGNLDSHIRVLERNGL 59 (100)
T ss_dssp HHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHhcCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 4555565555566778888999999999999999888776
No 73
>2gxg_A 146AA long hypothetical transcriptional regulator; winged helix; 1.45A {Sulfolobus tokodaii} PDB: 2eb7_A 2yr2_A 3gez_A 3gf2_A* 3gfi_A 3gfm_A 3gfj_A 3gfl_A
Probab=43.12 E-value=89 Score=22.36 Aligned_cols=40 Identities=3% Similarity=-0.106 Sum_probs=31.5
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-++|..|. .+......+-..+|++...+...++.+.+.||
T Consensus 40 ~~iL~~l~-~~~~~~~ela~~l~~s~~tvs~~l~~Le~~gl 79 (146)
T 2gxg_A 40 FLVLRATS-DGPKTMAYLANRYFVTQSAITASVDKLEEMGL 79 (146)
T ss_dssp HHHHHHHT-TSCBCHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHh-cCCcCHHHHHHHhCCCchhHHHHHHHHHHCCC
Confidence 34555555 55566778888999999999999999988876
No 74
>1sfx_A Conserved hypothetical protein AF2008; structural genomics, HTH MOT protein structure initiative, midwest center for structural genomics; 1.55A {Archaeoglobus fulgidus} SCOP: a.4.5.50
Probab=42.97 E-value=27 Score=23.84 Aligned_cols=41 Identities=10% Similarity=0.093 Sum_probs=32.0
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
..+|..|...+......+-..+|++...+.+.++.+.+.||
T Consensus 23 ~~il~~l~~~~~~s~~ela~~l~is~~tv~~~l~~L~~~gl 63 (109)
T 1sfx_A 23 VRIYSLLLERGGMRVSEIARELDLSARFVRDRLKVLLKRGF 63 (109)
T ss_dssp HHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 34555555555566778888999999999999999988876
No 75
>1sfu_A 34L protein; protein/Z-DNA complex, DNA binding protein/DNA complex; 2.00A {Yaba-like disease virus} SCOP: a.4.5.19
Probab=42.94 E-value=31 Score=23.83 Aligned_cols=46 Identities=9% Similarity=0.036 Sum_probs=33.9
Q ss_pred CCCHHHHHHHHhh---CCC-chHHHHHHhCCCCHHHHHHHHHHhhcCCCC
Q 026896 185 EITTNHLLLGIWS---EKE-SAGHKILATLGFNDEKAKEIAKSVSSRSYD 230 (231)
Q Consensus 185 ~I~teHLLLALl~---d~~-~~~~~iL~~lGvd~~~l~e~l~~i~~~~~~ 230 (231)
.+.+.++++..+. +++ ..+..|-+++|+++..+-+.+-.+.+.||=
T Consensus 10 ~~~~~~~v~~~i~~L~~~~~~Ta~~IAkkLg~sK~~vNr~LY~L~kkG~V 59 (75)
T 1sfu_A 10 DAEIFSLVKKEVLSLNTNDYTTAISLSNRLKINKKKINQQLYKLQKEDTV 59 (75)
T ss_dssp SHHHHHHHHHHHHTSCTTCEECHHHHHHHTTCCHHHHHHHHHHHHHTTSE
T ss_pred hHHHHHHHHHHHHhCCCCcchHHHHHHHHHCCCHHHHHHHHHHHHHCCCE
Confidence 3455555544332 233 567788889999999999999999999984
No 76
>1tbx_A ORF F-93, hypothetical 11.0 kDa protein; sulfolobus spindle virus, winged helix, fusellovirus; 2.70A {Sulfolobus virus 1} SCOP: a.4.5.48
Probab=42.79 E-value=32 Score=23.61 Aligned_cols=41 Identities=10% Similarity=0.110 Sum_probs=30.9
Q ss_pred HHHHHHHhhCCCchHHHH----HHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKI----LATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~i----L~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
..+|..|...+......+ -..+|++...+...++.+-+.||
T Consensus 11 ~~iL~~l~~~~~~~~~el~~~la~~l~is~~tvs~~l~~Le~~gl 55 (99)
T 1tbx_A 11 AIVLAYLYDNEGIATYDLYKKVNAEFPMSTATFYDAKKFLIQEGF 55 (99)
T ss_dssp HHHHHHHTTCTTCBHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCcCHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCC
Confidence 456666666555555556 56789999999999999988876
No 77
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=42.76 E-value=63 Score=23.58 Aligned_cols=43 Identities=14% Similarity=0.264 Sum_probs=32.3
Q ss_pred CHHHHHHHHhhCCCc-hHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 187 TTNHLLLGIWSEKES-AGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 187 ~teHLLLALl~d~~~-~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.--++|..|...++. ....+-..+|++...+...++.+-+.||
T Consensus 40 ~q~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Gl 83 (150)
T 3fm5_A 40 RSYSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGL 83 (150)
T ss_dssp HHHHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCC
Confidence 344555566555433 5567888899999999999999998887
No 78
>1s3j_A YUSO protein; structural genomics, MARR transcriptional regulator family, PSI, protein structure initiative; HET: MSE; 2.25A {Bacillus subtilis} SCOP: a.4.5.28
Probab=42.73 E-value=50 Score=24.12 Aligned_cols=42 Identities=7% Similarity=0.074 Sum_probs=32.5
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
--.+|..|...+......+-..+|++...+...++.+.+.||
T Consensus 39 ~~~iL~~l~~~~~~t~~ela~~l~~s~~tvs~~l~~Le~~gl 80 (155)
T 1s3j_A 39 QLFVLASLKKHGSLKVSEIAERMEVKPSAVTLMADRLEQKNL 80 (155)
T ss_dssp HHHHHHHHHHHSEEEHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 344566666555556677888899999999999999988876
No 79
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=41.82 E-value=29 Score=25.89 Aligned_cols=33 Identities=3% Similarity=-0.034 Sum_probs=28.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026896 167 QRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (231)
Q Consensus 167 ~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~ 200 (231)
..+++.|+..|...+. ..|...||..|+-.++.
T Consensus 77 ~~L~~~A~~~a~~~kr-ktI~~~di~~Av~~~e~ 109 (119)
T 4g92_C 77 TELTMRAWIHAEDNKR-RTLQRSDIAAALSKSDM 109 (119)
T ss_dssp HHHHHHHHHHHHHTTC-SEECHHHHHHHHTTCGG
T ss_pred HHHHHHHHHHHHhccc-CccCHHHHHHHHhcCch
Confidence 5678899999999998 99999999999987653
No 80
>3nrv_A Putative transcriptional regulator (MARR/EMRR FAM; PSI-2, protein structure initiati structural genomics; HET: MSE; 2.00A {Acinetobacter SP}
Probab=41.53 E-value=35 Score=24.89 Aligned_cols=41 Identities=17% Similarity=0.295 Sum_probs=33.0
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-++|..|...+......+-..+|++...+...++.+.+.||
T Consensus 43 ~~iL~~l~~~~~~t~~ela~~l~~~~~tvs~~l~~Le~~Gl 83 (148)
T 3nrv_A 43 WRIISVLSSASDCSVQKISDILGLDKAAVSRTVKKLEEKKY 83 (148)
T ss_dssp HHHHHHHHHSSSBCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 34666666666666677888899999999999999988886
No 81
>3l7w_A Putative uncharacterized protein SMU.1704; PADR, transcriptional factor, transcription; HET: MSE; 2.20A {Streptococcus mutans} SCOP: a.4.5.0
Probab=41.10 E-value=40 Score=24.04 Aligned_cols=42 Identities=26% Similarity=0.340 Sum_probs=32.7
Q ss_pred HHHHHHHHhhCCCchHHHHHHh----CCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILAT----LGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~----lGvd~~~l~e~l~~i~~~~~ 229 (231)
.+.++|+++.+.+.++..+.+. ++++...+...++.+.+.||
T Consensus 10 l~~~IL~~L~~~~~~gyel~~~l~~~~~i~~~tly~~L~~Le~~Gl 55 (108)
T 3l7w_A 10 IEYLILAIVSKHDSYGYDISQTIKLIASIKESTLYPILKKLEKAGY 55 (108)
T ss_dssp HHHHHHHHHHHSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHhCCCcChHHHHHHHHHHCCC
Confidence 3456777777666677677666 48999999999999988876
No 82
>3tgn_A ADC operon repressor ADCR; helix-turn-helix, transcriptional regulator, transcription; 2.00A {Streptococcus pneumoniae}
Probab=40.99 E-value=31 Score=25.01 Aligned_cols=40 Identities=15% Similarity=0.242 Sum_probs=31.5
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-++|..|...+ .....+-..+|++...+.+.++.+.+.||
T Consensus 41 ~~iL~~l~~~~-~t~~eLa~~l~~s~~tvs~~l~~L~~~Gl 80 (146)
T 3tgn_A 41 EHILMLLSEES-LTNSELARRLNVSQAAVTKAIKSLVKEGM 80 (146)
T ss_dssp HHHHHHHTTCC-CCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCC-CCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 34555555555 66778888899999999999999988887
No 83
>3oop_A LIN2960 protein; protein structure initiative, PSI-2, structural genomics, MI center for structural genomics, MCSG, unknown function; 1.78A {Listeria innocua}
Probab=40.93 E-value=52 Score=23.80 Aligned_cols=40 Identities=13% Similarity=0.114 Sum_probs=31.7
Q ss_pred HHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 190 HLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 190 HLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
++|..|...+......+-..+|++...+...++.+-+.||
T Consensus 41 ~iL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Gl 80 (143)
T 3oop_A 41 SVLEGIEANEPISQKEIALWTKKDTPTVNRIVDVLLRKEL 80 (143)
T ss_dssp HHHHHHHHHSSEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHcCCcCHHHHHHHHCCCHhhHHHHHHHHHHCCC
Confidence 3455555555566678888899999999999999998887
No 84
>3e6m_A MARR family transcriptional regulator; APC88769, silicibacter pomeroyi DSS, structural genomics, PSI-2, protein structure initiative; 2.20A {Silicibacter pomeroyi}
Probab=40.68 E-value=54 Score=24.40 Aligned_cols=43 Identities=7% Similarity=0.003 Sum_probs=34.2
Q ss_pred CHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 187 TTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 187 ~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.--++|..|...+......+-..+|++...+-..++.+-+.||
T Consensus 54 ~q~~vL~~l~~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Gl 96 (161)
T 3e6m_A 54 PKLRLLSSLSAYGELTVGQLATLGVMEQSTTSRTVDQLVDEGL 96 (161)
T ss_dssp HHHHHHHHHHHHSEEEHHHHHHHTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 3445666666656566778888999999999999999998887
No 85
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=40.55 E-value=32 Score=22.62 Aligned_cols=26 Identities=12% Similarity=-0.082 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHcCCCCcCHHHHHHHH
Q 026896 92 SFAMAELEARKLKYPNTGTEAFLMGI 117 (231)
Q Consensus 92 vl~~A~~~A~~~~~~~I~~eHLLlaL 117 (231)
+...|...|...+-..|.++|+.+++
T Consensus 39 l~~~A~~~a~~~kRkTI~~~Di~~A~ 64 (68)
T 1b67_A 39 IASEAVKLAKHAGRKTIKAEDIELAR 64 (68)
T ss_dssp HHHHHHHHHHHTTCSEECHHHHHHHG
T ss_pred HHHHHHHHHHHcCCCccCHHHHHHHH
Confidence 44455667889999999999999987
No 86
>3hhh_A Transcriptional regulator, PADR family; PF03551, structural PSI-2, protein structure initiative, midwest center for STR genomics, MCSG; 2.70A {Enterococcus faecalis} SCOP: a.4.5.0
Probab=40.51 E-value=34 Score=25.05 Aligned_cols=42 Identities=21% Similarity=0.270 Sum_probs=34.3
Q ss_pred HHHHHHHHhhCCCchHHHHHHhC------CCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATL------GFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~l------Gvd~~~l~e~l~~i~~~~~ 229 (231)
.+.++|+++.+...++..+.+.+ +++...+...++.+.+.|+
T Consensus 14 l~~~IL~lL~~~p~~Gyei~~~l~~~g~~~is~gtlY~~L~rLe~~Gl 61 (116)
T 3hhh_A 14 LEGLVLAIIQRKETYGYEITKILNDQGFTEIVEGTVYTILLRLEKNQW 61 (116)
T ss_dssp HHHHHHHHHHHSCBCHHHHHHHHHTTSCSSCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHcCCCCCCccHHHHHHHHHHHCCC
Confidence 56788888887777777777765 6899999999999888775
No 87
>3cjn_A Transcriptional regulator, MARR family; silicibacter pomeroy structural genomics, PSI-2, protein structure initiative; 1.95A {Silicibacter pomeroyi dss-3}
Probab=40.50 E-value=41 Score=24.96 Aligned_cols=42 Identities=2% Similarity=-0.124 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
--.+|..|...+......+-..+|++...+.+.++.+.+.||
T Consensus 54 ~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gl 95 (162)
T 3cjn_A 54 KMRALAILSAKDGLPIGTLGIFAVVEQSTLSRALDGLQADGL 95 (162)
T ss_dssp HHHHHHHHHHSCSEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCC
Confidence 345666777666567778888899999999999999988886
No 88
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=39.67 E-value=46 Score=22.55 Aligned_cols=29 Identities=17% Similarity=-0.073 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 026896 89 AIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (231)
Q Consensus 89 a~~vl~~A~~~A~~~~~~~I~~eHLLlaL 117 (231)
...+-..|...|+..+-..|+.+|++.|+
T Consensus 39 i~~la~eA~~~a~~~~rKTI~~~dI~~A~ 67 (76)
T 3b0c_W 39 LHRLAEEARTNAFENKSKIIKPEHTIAAA 67 (76)
T ss_dssp HHHHHHHHHHHHHHHTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 33344568888999999999999999886
No 89
>2d1h_A ST1889, 109AA long hypothetical transcriptional regulator; helix-turn-helix, intermolecular and intramolecular S-S bond structural genomics; 2.05A {Sulfolobus tokodaii} SCOP: a.4.5.50
Probab=39.62 E-value=38 Score=23.06 Aligned_cols=41 Identities=12% Similarity=0.155 Sum_probs=31.9
Q ss_pred HHHHHHHhh-CCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWS-EKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~-d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
..+|+.++. .+......+-..+|++...+.+.++.+.+.||
T Consensus 24 ~~~l~~l~~~~~~~t~~ela~~l~is~~tv~~~l~~L~~~g~ 65 (109)
T 2d1h_A 24 VAVLLKMVEIEKPITSEELADIFKLSKTTVENSLKKLIELGL 65 (109)
T ss_dssp HHHHHHHHHHCSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 345666665 45556678888899999999999999887776
No 90
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=39.61 E-value=26 Score=24.56 Aligned_cols=27 Identities=15% Similarity=-0.007 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 026896 89 AIRSFAMAELEARKLKYPNTGTEAFLM 115 (231)
Q Consensus 89 a~~vl~~A~~~A~~~~~~~I~~eHLLl 115 (231)
+++++..|..+|..-|..+|+.+||=-
T Consensus 45 V~EAv~RA~~~a~~e~~~~le~~~LEk 71 (81)
T 3b0b_C 45 VREAAARAARQAQAEDLEKVDIEHVEK 71 (81)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCeecHHHHHH
Confidence 456777888888888999999999844
No 91
>3r0a_A Putative transcriptional regulator; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.31A {Methanosarcina mazei}
Probab=39.61 E-value=35 Score=24.94 Aligned_cols=42 Identities=7% Similarity=0.150 Sum_probs=34.2
Q ss_pred HHHHHHHHhhCCC--chHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKE--SAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~--~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-..+|..|++.+. .....+-..+|++...+.+.++.+.+.||
T Consensus 28 e~~il~~L~~~~~~~~t~~eLa~~l~~s~sTV~r~L~~L~~~Gl 71 (123)
T 3r0a_A 28 DLNVMKSFLNEPDRWIDTDALSKSLKLDVSTVQRSVKKLHEKEI 71 (123)
T ss_dssp HHHHHHHHHHSTTCCEEHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 3457777777665 56778888999999999999999988876
No 92
>3deu_A Transcriptional regulator SLYA; MARR, WING-helix, transcription regulator, activator, DNA-binding, repressor; HET: SAL; 2.30A {Salmonella typhimurium} SCOP: a.4.5.28
Probab=39.53 E-value=67 Score=24.23 Aligned_cols=45 Identities=11% Similarity=0.215 Sum_probs=33.9
Q ss_pred CCCHH--HHHHHHhh-CCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 185 EITTN--HLLLGIWS-EKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 185 ~I~te--HLLLALl~-d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-++.. .+|..|.. .+......+-..+|++...+-..++.+-+.||
T Consensus 50 glt~~q~~vL~~L~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Gl 97 (166)
T 3deu_A 50 ELTQTHWVTLHNIHQLPPDQSQIQLAKAIGIEQPSLVRTLDQLEDKGL 97 (166)
T ss_dssp TCCHHHHHHHHHHHHSCSSEEHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred CCCHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHhhHHHHHHHHHHCCC
Confidence 34444 35566665 44456678888899999999999999998887
No 93
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=39.33 E-value=38 Score=22.50 Aligned_cols=34 Identities=9% Similarity=0.001 Sum_probs=29.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhh
Q 026896 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWS 197 (231)
Q Consensus 163 S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~ 197 (231)
..++..+...|...|.+.+. ..|+.+|+.-|+-.
T Consensus 39 GADi~~l~~eA~~~a~~~~~-~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 39 GAEVKGVCTEAGMYALRERR-VHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhCC-CCCCHHHHHHHHHH
Confidence 36789999999999998888 89999999998754
No 94
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=38.97 E-value=49 Score=22.27 Aligned_cols=31 Identities=16% Similarity=-0.031 Sum_probs=27.6
Q ss_pred HHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHh
Q 026896 165 QAQRALDWAFNEKLKSGESGEITTNHLLLGIW 196 (231)
Q Consensus 165 ~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl 196 (231)
-+..|++.|..+|...|. ..|..+++=||+=
T Consensus 34 y~~~il~dA~~~a~HAgr-ktv~~eDVkLAi~ 64 (68)
T 1taf_A 34 YVTSILDDAKVYANHARK-KTIDLDDVRLATE 64 (68)
T ss_dssp HHHHHHHHHHHHHHHTTC-SSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCC-CCCCHHHHHHHHH
Confidence 357899999999999999 9999999999874
No 95
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=38.49 E-value=37 Score=24.61 Aligned_cols=36 Identities=3% Similarity=-0.123 Sum_probs=31.3
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcc
Q 026896 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (231)
Q Consensus 85 fT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~ 120 (231)
+...+.+++..|...|...+-..|+++.+.+||=..
T Consensus 58 le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 58 LKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 457788889999999999999999999999998544
No 96
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=38.36 E-value=55 Score=22.16 Aligned_cols=34 Identities=15% Similarity=-0.001 Sum_probs=29.9
Q ss_pred hhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 026896 84 KWSARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (231)
Q Consensus 84 kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaL 117 (231)
...-+++++++.|...++..+...++++++=.||
T Consensus 35 dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Al 68 (70)
T 1taf_B 35 DVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHH
Confidence 3567889999999999999999999999987765
No 97
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=38.23 E-value=35 Score=23.72 Aligned_cols=36 Identities=6% Similarity=-0.116 Sum_probs=31.8
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcc
Q 026896 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (231)
Q Consensus 85 fT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~ 120 (231)
+...+.+++..|...|...+-..|+++.+.++|=..
T Consensus 40 l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 40 LKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred HHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 567888999999999999999999999999988543
No 98
>2frh_A SARA, staphylococcal accessory regulator A; winged-helix protein, divalent metal binding, transcription; 2.50A {Staphylococcus aureus} SCOP: a.4.5.28 PDB: 2fnp_A 1fzp_D
Probab=38.04 E-value=91 Score=22.36 Aligned_cols=42 Identities=21% Similarity=0.234 Sum_probs=33.5
Q ss_pred HHHHHHHHhhC--CCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSE--KESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d--~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-.++|..|... +......+-..+|++...+-..++.+-+.||
T Consensus 39 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Gl 82 (127)
T 2frh_A 39 EFAVLTYISENKEKEYYLKDIINHLNYKQPQVVKAVKILSQEDY 82 (127)
T ss_dssp HHHHHHHHHHTCCSEEEHHHHHHHSSSHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 34566667665 4556678888999999999999999998887
No 99
>2a61_A Transcriptional regulator TM0710; APC4350, MCSG, midwest center for structural genomics, PSI, protein structure initiative, MARR; 1.80A {Thermotoga maritima} SCOP: a.4.5.28
Probab=38.02 E-value=33 Score=24.79 Aligned_cols=42 Identities=17% Similarity=0.267 Sum_probs=33.0
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
--++|..|...+......+-..+|++...+...++.+.+.||
T Consensus 35 ~~~iL~~l~~~~~~~~~~la~~l~~s~~tvs~~l~~L~~~gl 76 (145)
T 2a61_A 35 QFDILQKIYFEGPKRPGELSVLLGVAKSTVTGLVKRLEADGY 76 (145)
T ss_dssp HHHHHHHHHHHCCBCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHCCCchhHHHHHHHHHHCCC
Confidence 345666666655566677888899999999999999988886
No 100
>3cuo_A Uncharacterized HTH-type transcriptional regulato; DNA-binding transcriptional regulator, structural genomics, MCSG; 2.00A {Escherichia coli K12}
Probab=37.97 E-value=41 Score=22.74 Aligned_cols=41 Identities=5% Similarity=0.064 Sum_probs=31.2
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
..+|..|...+.....++-+.+|++...+...++.+.+.||
T Consensus 27 ~~il~~l~~~~~~s~~ela~~l~is~~tvs~~l~~L~~~gl 67 (99)
T 3cuo_A 27 LLILCMLSGSPGTSAGELTRITGLSASATSQHLARMRDEGL 67 (99)
T ss_dssp HHHHHHHTTCCSEEHHHHHHHHCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 34565555543566678888899999999999999887775
No 101
>3bdd_A Regulatory protein MARR; putative multiple antibiotic-resistance repressor, structura genomics, joint center for structural genomics, JCSG; 2.20A {Streptococcus suis}
Probab=37.83 E-value=34 Score=24.56 Aligned_cols=42 Identities=10% Similarity=0.122 Sum_probs=32.9
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
--.+|..|...+......+-..+|++...+...++.+.+.||
T Consensus 33 ~~~iL~~l~~~~~~~~~ela~~l~is~~~vs~~l~~L~~~gl 74 (142)
T 3bdd_A 33 RYSILQTLLKDAPLHQLALQERLQIDRAAVTRHLKLLEESGY 74 (142)
T ss_dssp HHHHHHHHHHHCSBCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 345666666655566678888899999999999999988876
No 102
>2eth_A Transcriptional regulator, putative, MAR family; MARR family, structural genomics, joint center for structura genomics, JCSG; 2.30A {Thermotoga maritima} SCOP: a.4.5.28
Probab=37.63 E-value=41 Score=24.84 Aligned_cols=68 Identities=10% Similarity=-0.070 Sum_probs=44.7
Q ss_pred ccCHHHHHHHHHHHHHHHHcCCCCC-----CCH--HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 161 PLTEQAQRALDWAFNEKLKSGESGE-----ITT--NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 161 ~~S~~l~~vLe~A~~~A~~~g~~~~-----I~t--eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.....+...|..+...-.+.-+ .. ++. -.+|..|...+......+-+.+|++...+...++.+-+.||
T Consensus 13 ~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~lt~~~~~iL~~l~~~~~~t~~ela~~l~is~~tvs~~l~~Le~~Gl 87 (154)
T 2eth_A 13 MDALEIFKTLFSLVMRFSSYLP-SNEEISDMKTTELYAFLYVALFGPKKMKEIAEFLSTTKSNVTNVVDSLEKRGL 87 (154)
T ss_dssp CCHHHHHHHHHHHHHHHHTTSC-CCHHHHHSBHHHHHHHHHHHHHCCBCHHHHHHHTTSCHHHHHHHHHHHHHTTS
T ss_pred ccHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCHHHHHHHHHHHHcCCCCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 3344555555555554443333 22 332 34666776655566778888999999999999999988876
No 103
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=37.10 E-value=58 Score=22.03 Aligned_cols=32 Identities=6% Similarity=0.061 Sum_probs=28.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Q 026896 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGI 195 (231)
Q Consensus 163 S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLAL 195 (231)
...+.++++.|...++..|. ..++++++=.||
T Consensus 37 Eyr~~eI~qeA~kfmrHakR-k~Lt~~DI~~Al 68 (70)
T 1taf_B 37 SIKLKRIVQDAAKFMNHAKR-QKLSVRDIDMSL 68 (70)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCC-CeecHHHHHHHH
Confidence 45688999999999999999 999999998775
No 104
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=37.01 E-value=47 Score=22.48 Aligned_cols=30 Identities=13% Similarity=0.090 Sum_probs=23.7
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHh
Q 026896 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIW 196 (231)
Q Consensus 166 l~~vLe~A~~~A~~~g~~~~I~teHLLLALl 196 (231)
+..+-..|.+.|...+. ..|+.+|++.|+=
T Consensus 39 i~~la~eA~~~a~~~~r-KTI~~~dI~~A~~ 68 (76)
T 3b0c_W 39 LHRLAEEARTNAFENKS-KIIKPEHTIAAAK 68 (76)
T ss_dssp HHHHHHHHHHHHHHHTC-SSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-CCCCHHHHHHHHH
Confidence 34555667788888888 9999999998863
No 105
>3bja_A Transcriptional regulator, MARR family, putative; NP_978771.1, putative MARR-like transcription regulator, MAR structural genomics; 2.38A {Bacillus cereus}
Probab=36.92 E-value=49 Score=23.56 Aligned_cols=41 Identities=7% Similarity=0.156 Sum_probs=32.2
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-++|..|...+......+-..+|++...+...++.+.+.||
T Consensus 36 ~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gl 76 (139)
T 3bja_A 36 FGVIQVLAKSGKVSMSKLIENMGCVPSNMTTMIQRMKRDGY 76 (139)
T ss_dssp HHHHHHHHHSCSEEHHHHHHHCSSCCTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCcCHHHHHHHHCCChhHHHHHHHHHHHCCC
Confidence 34566666655566778888899999999999999888876
No 106
>4aik_A Transcriptional regulator SLYA; transcription, transcription factor; 1.85A {Yersinia pseudotuberculosis} PDB: 4aih_A 4aij_A 3qpt_A* 3q5f_A*
Probab=36.74 E-value=62 Score=24.21 Aligned_cols=44 Identities=9% Similarity=0.139 Sum_probs=32.4
Q ss_pred CCHH--HHHHHHhhCCC-chHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 186 ITTN--HLLLGIWSEKE-SAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 186 I~te--HLLLALl~d~~-~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
++.. .+|..|...+. .....+-..+|++...+-..++.+-+.||
T Consensus 29 Lt~~q~~vL~~L~~~~~~~~~~eLa~~l~~~~~tvs~~v~~Le~~Gl 75 (151)
T 4aik_A 29 LTQTHWVTLYNINRLPPEQSQIQLAKAIGIEQPSLVRTLDQLEEKGL 75 (151)
T ss_dssp CCHHHHHHHHHHHHSCTTSCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHcCCCCcHHHHHHHHCcCHHHHHHHHHHHHhCCC
Confidence 4444 45566655443 33357778899999999999999999887
No 107
>3ech_A MEXR, multidrug resistance operon repressor; winged helix, helix-turn-helix, protein-peptide complex; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.28 PDB: 1lnw_A 3mex_A
Probab=36.66 E-value=70 Score=23.04 Aligned_cols=43 Identities=9% Similarity=0.037 Sum_probs=30.7
Q ss_pred CHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 187 TTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 187 ~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.--++|..|...+......+-..+|++...+...++.+-+.||
T Consensus 38 ~~~~vL~~l~~~~~~t~~eLa~~l~~~~~tvs~~l~~L~~~Gl 80 (142)
T 3ech_A 38 PDVHVLKLIDEQRGLNLQDLGRQMCRDKALITRKIRELEGRNL 80 (142)
T ss_dssp HHHHHHHHHHHTTTCCHHHHHHHHC---CHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHhCCCcCHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 3345666666666666678888899999999999999988887
No 108
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=36.54 E-value=19 Score=25.91 Aligned_cols=33 Identities=24% Similarity=0.152 Sum_probs=23.8
Q ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026896 167 QRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (231)
Q Consensus 167 ~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~ 200 (231)
.++++.|+..|...+. ..|...||-+|+-.++.
T Consensus 47 ~el~~~A~~~a~~~kr-ktI~~~di~~av~~~e~ 79 (98)
T 1jfi_A 47 ESLLKKACQVTQSRNA-KTMTTSHLKQCIELEGD 79 (98)
T ss_dssp HHHHHHHHHHHHTC----CBCHHHHHTTCC----
T ss_pred HHHHHHHHHHHHHcCC-CeecHHHHHHHHhcCch
Confidence 6688899999998888 99999999999987654
No 109
>2htj_A P fimbrial regulatory protein KS71A; winged helix-turn-helix, PAP PILI, transcription activator; NMR {Escherichia coli} SCOP: a.4.5.73
Probab=36.42 E-value=44 Score=22.28 Aligned_cols=39 Identities=13% Similarity=0.066 Sum_probs=28.9
Q ss_pred HHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 191 LLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 191 LLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
||..|.........++-+.+|++...+.+.++.+.+.|+
T Consensus 5 Il~~L~~~~~~s~~eLa~~lgvs~~tv~r~L~~L~~~Gl 43 (81)
T 2htj_A 5 ILEFLNRHNGGKTAEIAEALAVTDYQARYYLLLLEKAGM 43 (81)
T ss_dssp HHHHHHHSCCCCHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 444555544456677888899999999999998877664
No 110
>1qgp_A Protein (double stranded RNA adenosine deaminase); Z-alpha-Z-DNA binding domain, RNA-editing, Z-DNA recognition, ADAR1, helix- turn-helix; NMR {Homo sapiens} SCOP: a.4.5.19
Probab=36.01 E-value=28 Score=23.59 Aligned_cols=40 Identities=15% Similarity=0.292 Sum_probs=29.3
Q ss_pred HHHHHHhhC-C---CchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 190 HLLLGIWSE-K---ESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 190 HLLLALl~d-~---~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.-+|.+|.+ . ...+.++-+.+|++...+...+..+.+.|+
T Consensus 17 ~~IL~~L~~~~~~~~~t~~eLA~~Lgvs~~tV~~~L~~L~~~G~ 60 (77)
T 1qgp_A 17 QRILKFLEELGEGKATTAHDLSGKLGTPKKEINRVLYSLAKKGK 60 (77)
T ss_dssp HHHHHHHHHHCSSSCEEHHHHHHHHCCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHcCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 334444443 3 346678888999999999999999887765
No 111
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=35.97 E-value=46 Score=22.07 Aligned_cols=35 Identities=20% Similarity=0.085 Sum_probs=29.7
Q ss_pred hc-HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhc
Q 026896 85 WS-ARAIRSFAMAELEARKLKYPNTGTEAFLMGILV 119 (231)
Q Consensus 85 fT-~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~ 119 (231)
|| .++.++...|...|...+...|+.+|+.-|+-+
T Consensus 37 ~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 37 ASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp CCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 44 567888999999999999999999999988743
No 112
>1oyi_A Double-stranded RNA-binding protein; (alpha+beta) helix-turn-helix, viral protein; NMR {Vaccinia virus} SCOP: a.4.5.19
Probab=35.93 E-value=56 Score=22.79 Aligned_cols=42 Identities=2% Similarity=0.027 Sum_probs=31.7
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
+..-+|.+|......+.++-+.+|++...+.+.+..+.+.|+
T Consensus 18 ~~~~IL~lL~~~g~sa~eLAk~LgiSk~aVr~~L~~Le~eG~ 59 (82)
T 1oyi_A 18 IVCEAIKTIGIEGATAAQLTRQLNMEKREVNKALYDLQRSAM 59 (82)
T ss_dssp HHHHHHHHHSSSTEEHHHHHHHSSSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHcCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 334444556554466678888999999999999999988776
No 113
>2hzt_A Putative HTH-type transcriptional regulator YTCD; DNA-binding protein, HTH-type transcription regulators, structural genomics, PSI-2; HET: CSU MSE; 2.00A {Bacillus subtilis} SCOP: a.4.5.69
Probab=35.40 E-value=55 Score=23.03 Aligned_cols=39 Identities=3% Similarity=0.078 Sum_probs=30.6
Q ss_pred HHHHHHhhCCCchHHHHHHhC-CCCHHHHHHHHHHhhcCCC
Q 026896 190 HLLLGIWSEKESAGHKILATL-GFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 190 HLLLALl~d~~~~~~~iL~~l-Gvd~~~l~e~l~~i~~~~~ 229 (231)
-||..|. +......++-+.+ |++...+-+.++.+.+.||
T Consensus 18 ~IL~~L~-~~~~~~~eLa~~l~~is~~tls~~L~~Le~~Gl 57 (107)
T 2hzt_A 18 VILXHLT-HGKKRTSELKRLMPNITQKMLTQQLRELEADGV 57 (107)
T ss_dssp HHHHHHT-TCCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHH-hCCCCHHHHHHHhcCCCHHHHHHHHHHHHHCCC
Confidence 3555555 4456667888899 9999999999999988876
No 114
>4esb_A Transcriptional regulator, PADR family; DNA binding protein, HTH fold; 2.50A {Bacillus cereus}
Probab=35.40 E-value=33 Score=24.97 Aligned_cols=43 Identities=14% Similarity=0.113 Sum_probs=34.3
Q ss_pred CHHHHHHHHhhCCCchHHHHHHhC------CCCHHHHHHHHHHhhcCCC
Q 026896 187 TTNHLLLGIWSEKESAGHKILATL------GFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 187 ~teHLLLALl~d~~~~~~~iL~~l------Gvd~~~l~e~l~~i~~~~~ 229 (231)
..+.++|+++.+...++..+.+.+ +++...+...++.+.+.|+
T Consensus 9 ~l~~~IL~~L~~~~~~Gyei~~~l~~~~~~~is~gtlY~~L~rLe~~Gl 57 (115)
T 4esb_A 9 VLEGCILYIISQEEVYGYELSTKLNKHGFTFVSEGSIYPLLLRMQKEKL 57 (115)
T ss_dssp THHHHHHHHHHHSCEEHHHHHHHHHHTTCTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHcCCCCCCcChHHHHHHHHHHCCC
Confidence 357788888887777777777665 4899999999999888775
No 115
>3l9f_A Putative uncharacterized protein SMU.1604C; PADR, transcription regulator; 1.80A {Streptococcus mutans}
Probab=35.12 E-value=20 Score=29.21 Aligned_cols=51 Identities=22% Similarity=0.285 Sum_probs=36.2
Q ss_pred HHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhC--------CCCHHHHHHHHHHhhcCCC
Q 026896 178 LKSGESGEITTNHLLLGIWSEKESAGHKILATL--------GFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 178 ~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~l--------Gvd~~~l~e~l~~i~~~~~ 229 (231)
..+.. +.+++.|++|++|.+...++..+.+.+ +++...+...++.+.+.|+
T Consensus 28 ~~l~k-G~ms~r~~IL~lL~~~p~~GYeL~~~l~~~~~~~~~~s~g~lY~~L~rLe~~Gl 86 (204)
T 3l9f_A 28 QQMGR-GSMQGKDIILGILSKKERSGYEINDILQNQLSYFYDGTYGMIYPTLRKLEKDGK 86 (204)
T ss_dssp --------CCHHHHHHHHTSSCCEEHHHHHHHHHHTSTTTEECCTTCHHHHHHHHHHTTS
T ss_pred HHHhh-chhHHHHHHHHHHHcCCCCHHHHHHHHHHHhCCccCCCcchHHHHHHHHHHCCC
Confidence 44556 789999999999998777777666554 5788889999998888775
No 116
>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62
Probab=34.71 E-value=79 Score=21.52 Aligned_cols=42 Identities=10% Similarity=-0.051 Sum_probs=30.6
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
...|+-.|-+.......++-+.+|++...++..+..+.+.|+
T Consensus 4 L~~Il~~L~~~g~vsv~eLa~~l~VS~~TIRrdL~~Le~~G~ 45 (78)
T 1xn7_A 4 LIQVRDLLALRGRMEAAQISQTLNTPQPMINAMLQQLESMGK 45 (78)
T ss_dssp HHHHHHHHHHSCSBCHHHHHHHTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 344444554555566678888999999999999988877664
No 117
>3u0k_A Rcamp; fluorescent protein, calcium binding, EF-hand, genetically E calcium indicator; HET: NFA CRK; 2.10A {Entacmaea quadricolor}
Probab=34.25 E-value=1.3e+02 Score=27.62 Aligned_cols=36 Identities=14% Similarity=-0.081 Sum_probs=30.3
Q ss_pred chhhcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 026896 82 IPKWSARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (231)
Q Consensus 82 ~~kfT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaL 117 (231)
.++||++-.+-|..+.+.....+.-+|+.+-|--+|
T Consensus 293 ~E~Lt~EEI~ELREaF~~fDkDgdG~IS~eELk~aL 328 (440)
T 3u0k_A 293 RDQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVM 328 (440)
T ss_dssp CBCCCHHHHHHHHHHHHHHCTTCSSEECHHHHHHHH
T ss_pred HhhhhHHHHHHHHHHHHHHcCCCCCEECHHHHHHHH
Confidence 457899999999999999999999999988775444
No 118
>2qvo_A Uncharacterized protein AF_1382; PSI, structural genomics, southeast collaboratory for structural genomics; 1.85A {Archaeoglobus fulgidus dsm 4304} PDB: 3o3k_A 3ov8_A
Probab=33.86 E-value=43 Score=22.96 Aligned_cols=43 Identities=14% Similarity=0.066 Sum_probs=32.9
Q ss_pred CHHHHHHHHhhCC-C---chHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 187 TTNHLLLGIWSEK-E---SAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 187 ~teHLLLALl~d~-~---~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
....+|+.++... . .....+-..+|++...+-..++.+.+.||
T Consensus 13 ~~~~iL~~l~~~~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Gl 59 (95)
T 2qvo_A 13 KALEILMTIYYESLGGNDVYIQYIASKVNSPHSYVWLIIKKFEEAKM 59 (95)
T ss_dssp HHHHHHHHHHHHHHTTCCEEHHHHHHHSSSCHHHHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHccCCCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCcC
Confidence 3445666776542 2 45667888999999999999999999887
No 119
>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}
Probab=33.72 E-value=86 Score=21.98 Aligned_cols=40 Identities=5% Similarity=-0.044 Sum_probs=30.5
Q ss_pred HHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 190 HLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 190 HLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-|+-.|-+.......++-+.+|++...++..+..+.+.||
T Consensus 6 ~Il~~L~~~g~vsv~eLA~~l~VS~~TIRrDL~~Le~~G~ 45 (87)
T 2k02_A 6 EVRDMLALQGRMEAKQLSARLQTPQPLIDAMLERMEAMGK 45 (87)
T ss_dssp HHHHHHHHSCSEEHHHHHHHTTCCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHcCCCcHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 3444444445556678888999999999999999988876
No 120
>3f3x_A Transcriptional regulator, MARR family, putative; DNA binding protein, DNA-binding, transcription regulation; 1.90A {Sulfolobus solfataricus}
Probab=33.03 E-value=89 Score=22.46 Aligned_cols=41 Identities=5% Similarity=-0.016 Sum_probs=33.1
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
--++|..|...+. ....+-..+|++...+...++.+.+.||
T Consensus 39 ~~~iL~~l~~~~~-~~~~la~~l~~~~~tvs~~l~~Le~~Gl 79 (144)
T 3f3x_A 39 DFSILKATSEEPR-SMVYLANRYFVTQSAITAAVDKLEAKGL 79 (144)
T ss_dssp HHHHHHHHHHSCE-EHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHCCC-CHHHHHHHHCCChhHHHHHHHHHHHCCC
Confidence 3456666666655 6678888899999999999999998887
No 121
>2nyx_A Probable transcriptional regulatory protein, RV14; alpha/beta, structural genomics, PSI-2; 2.30A {Mycobacterium tuberculosis}
Probab=33.00 E-value=39 Score=25.55 Aligned_cols=41 Identities=7% Similarity=0.039 Sum_probs=33.0
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-.+|..|...+......+-..+|++...+...++.+.+.||
T Consensus 48 ~~iL~~L~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~Gl 88 (168)
T 2nyx_A 48 FRTLVILSNHGPINLATLATLLGVQPSATGRMVDRLVGAEL 88 (168)
T ss_dssp HHHHHHHHHHCSEEHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHcCCCCHHHHHHHhCCCHHHHHHHHHHHHHCCC
Confidence 34566666655566778888899999999999999988887
No 122
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=32.98 E-value=45 Score=24.79 Aligned_cols=31 Identities=10% Similarity=-0.077 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHhccC
Q 026896 91 RSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (231)
Q Consensus 91 ~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~ 121 (231)
.+...|.+.|...+...|+++||..++-.++
T Consensus 78 ~L~~~A~~~a~~~krktI~~~di~~Av~~~e 108 (119)
T 4g92_C 78 ELTMRAWIHAEDNKRRTLQRSDIAAALSKSD 108 (119)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHhcccCccCHHHHHHHHhcCc
Confidence 4456778889999999999999999997654
No 123
>2xvc_A ESCRT-III, SSO0910; cell cycle, cell division, cytokinesis, winged-helix; 2.15A {Sulfolobus solfataricus}
Probab=32.92 E-value=59 Score=21.34 Aligned_cols=44 Identities=9% Similarity=0.188 Sum_probs=32.4
Q ss_pred CCCHHHHHHHHhhCCCc--hHHHHHHhCCCCHHHHHHHHHHhhcCC
Q 026896 185 EITTNHLLLGIWSEKES--AGHKILATLGFNDEKAKEIAKSVSSRS 228 (231)
Q Consensus 185 ~I~teHLLLALl~d~~~--~~~~iL~~lGvd~~~l~e~l~~i~~~~ 228 (231)
.+-+|.-|+..+....+ ....+-+.+||+++.+...++.+.+.|
T Consensus 8 ~~~~e~~lL~yIr~sGGildI~~~a~kygV~kdeV~~~LrrLe~KG 53 (59)
T 2xvc_A 8 HMITERELLDYIVNNGGFLDIEHFSKVYGVEKQEVVKLLEALKNKG 53 (59)
T ss_dssp CCCCHHHHHHHHHHTTSEEEHHHHHHHHCCCHHHHHHHHHHHHHTT
T ss_pred hhccHHHHHHHHHHcCCEEeHHHHHHHhCCCHHHHHHHHHHHHHCC
Confidence 45566666777765544 345677889999999999999887655
No 124
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=32.34 E-value=56 Score=26.28 Aligned_cols=28 Identities=14% Similarity=0.031 Sum_probs=22.6
Q ss_pred HHHHHHHHcCCCCcCHHHHHHHHhccCC
Q 026896 95 MAELEARKLKYPNTGTEAFLMGILVEGT 122 (231)
Q Consensus 95 ~A~~~A~~~~~~~I~~eHLLlaLL~~~~ 122 (231)
.|...|...+-..|..+||+.||=.-+-
T Consensus 56 eA~e~a~~~~RKTI~~eDVl~Al~~LgF 83 (179)
T 1jfi_B 56 EANEICNKSEKKTISPEHVIQALESLGF 83 (179)
T ss_dssp HHHHHHHHTTCSSBCHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCCcCCHHHHHHHHHhcCh
Confidence 3456788899999999999999975543
No 125
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=32.14 E-value=52 Score=23.17 Aligned_cols=27 Identities=4% Similarity=-0.043 Sum_probs=21.6
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHH
Q 026896 89 AIRSFAMAELEARKLKYPNTGTEAFLM 115 (231)
Q Consensus 89 a~~vl~~A~~~A~~~~~~~I~~eHLLl 115 (231)
+++++..|...|..-+..+|+.+||--
T Consensus 49 V~EAv~RA~~~a~~e~~~~le~e~LEk 75 (84)
T 4dra_E 49 VVEAAVRGVRQAQAEDALRVDVDQLEK 75 (84)
T ss_dssp HHHHHHHHHHHHHHTTCSSBCHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCCcccHHHHHH
Confidence 456777788888888899999999854
No 126
>2fxa_A Protease production regulatory protein HPR; protease porduction, regulation, STR genomics, PSI, protein structure initiative; HET: PGE P6G 1PE; 2.40A {Bacillus subtilis} SCOP: a.4.5.28
Probab=32.01 E-value=79 Score=25.05 Aligned_cols=42 Identities=17% Similarity=0.171 Sum_probs=33.9
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
--++|..|...+......+-..+|++...+...++.+-+.||
T Consensus 50 q~~iL~~L~~~~~~t~~eLa~~l~i~~stvs~~l~~Le~~Gl 91 (207)
T 2fxa_A 50 EHHILWIAYQLNGASISEIAKFGVMHVSTAFNFSKKLEERGY 91 (207)
T ss_dssp HHHHHHHHHHHTSEEHHHHHHHTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 345577777666667778888999999999999999988876
No 127
>3u2r_A Regulatory protein MARR; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, helix-turn-helix; 2.20A {Planctomyces limnophilus}
Probab=31.37 E-value=95 Score=23.13 Aligned_cols=42 Identities=14% Similarity=0.052 Sum_probs=29.6
Q ss_pred HHHHHHHHhhC--CCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSE--KESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d--~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
--++|..|... +......+-..+|++...+-..++.+-+.||
T Consensus 48 q~~vL~~l~~~~~~~~t~~eLa~~l~~~~~tvs~~l~~Le~~Gl 91 (168)
T 3u2r_A 48 QYNTLRLLRSVHPEGMATLQIADRLISRAPDITRLIDRLDDRGL 91 (168)
T ss_dssp HHHHHHHHHHHTTSCEEHHHHHHHC---CTHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHhcCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCC
Confidence 34456666652 3566778888999999999999999998887
No 128
>1z91_A Organic hydroperoxide resistance transcriptional; OHRR, MARR family, bacterial transcription factor, DNA bindi protein; 2.50A {Bacillus subtilis} SCOP: a.4.5.28 PDB: 1z9c_A*
Probab=31.18 E-value=38 Score=24.55 Aligned_cols=41 Identities=15% Similarity=0.209 Sum_probs=31.5
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-++|..|...+......+-..+|++...+...++.+.+.||
T Consensus 43 ~~iL~~l~~~~~~~~~~la~~l~~~~~tvs~~l~~L~~~gl 83 (147)
T 1z91_A 43 YLALLLLWEHETLTVKKMGEQLYLDSGTLTPMLKRMEQQGL 83 (147)
T ss_dssp HHHHHHHHHHSEEEHHHHHHTTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHCCCCCHHHHHHHHCCCcCcHHHHHHHHHHCCC
Confidence 34566666555556677888899999999999999888776
No 129
>2oqg_A Possible transcriptional regulator, ARSR family P; winged-helix-turn-helix, structural genomics, PSI-2, protein structure initiative; 1.54A {Rhodococcus SP}
Probab=30.77 E-value=64 Score=22.43 Aligned_cols=40 Identities=5% Similarity=0.130 Sum_probs=31.1
Q ss_pred HHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
..||..| .++......+-+.+|++...+...++.+.+.||
T Consensus 24 ~~IL~~L-~~~~~~~~ela~~l~is~~tv~~~l~~L~~~gl 63 (114)
T 2oqg_A 24 WEILTEL-GRADQSASSLATRLPVSRQAIAKHLNALQACGL 63 (114)
T ss_dssp HHHHHHH-HHSCBCHHHHHHHSSSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHH-HcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 3455555 555566778889999999999999999888775
No 130
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=30.12 E-value=70 Score=24.05 Aligned_cols=34 Identities=3% Similarity=0.011 Sum_probs=28.7
Q ss_pred HHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhC
Q 026896 164 EQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSE 198 (231)
Q Consensus 164 ~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d 198 (231)
.-+.+++..|..++...+. +.|+++++.+|+=..
T Consensus 79 ~~l~~i~rdav~yaehA~R-KTVta~DV~~Alkr~ 112 (121)
T 2ly8_A 79 SFLESVIRDSVTYTEHAKR-KTVTSLDVVYALKRQ 112 (121)
T ss_dssp HHHHHHHHHHHHHHHHTTC-CCBCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhcCC-CcCcHHHHHHHHHhC
Confidence 4467788899999999999 999999999997544
No 131
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=30.11 E-value=56 Score=24.02 Aligned_cols=34 Identities=6% Similarity=-0.089 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCC
Q 026896 166 AQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKE 200 (231)
Q Consensus 166 l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~ 200 (231)
+..+...|..+|...|. ..|+.+++.+||=..+.
T Consensus 41 ~~~v~~da~~~A~HA~R-KTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 41 FKQISSDLEAYSQHAGR-KTVEMADVELLMRRQGL 74 (111)
T ss_dssp HHHHHHHHHHHHHHTTC-SEECHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHcCC-CcCCHHHHHHHHHHCCC
Confidence 46788889999999999 99999999999987653
No 132
>2bv6_A MGRA, HTH-type transcriptional regulator MGRA; multidrug resistance regulator, virulence determinant, transcriptional factors; 2.8A {Staphylococcus aureus} SCOP: a.4.5.28
Probab=29.65 E-value=39 Score=24.39 Aligned_cols=43 Identities=14% Similarity=0.259 Sum_probs=33.8
Q ss_pred CHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 187 TTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 187 ~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.--.+|..|...+......+-..+|++...+...++.+.+.||
T Consensus 38 ~~~~iL~~l~~~~~~~~~ela~~l~~~~~tvs~~l~~L~~~gl 80 (142)
T 2bv6_A 38 PQFLVLTILWDESPVNVKKVVTELALDTGTVSPLLKRMEQVDL 80 (142)
T ss_dssp HHHHHHHHHHHSSEEEHHHHHHHTTCCTTTHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHcCCcCHHHHHHHHCCChhhHHHHHHHHHHCCC
Confidence 3445666776666566678888899999999999999988876
No 133
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=29.57 E-value=58 Score=23.14 Aligned_cols=31 Identities=13% Similarity=-0.063 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHHcCCCCcCHHHHHHHHhccC
Q 026896 91 RSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (231)
Q Consensus 91 ~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~ 121 (231)
.+...|.+.|...+-..|.++|+..++-.++
T Consensus 56 ~l~~~A~~~a~~~krktI~~~di~~Av~~~e 86 (97)
T 1n1j_B 56 ELTLRAWIHTEDNKRRTLQRNDIAMAITKFD 86 (97)
T ss_dssp HHHHHHHHHHHHTTCSEECHHHHHHHHTTCG
T ss_pred HHHHHHHHHHHHcCCccCCHHHHHHHHhcCc
Confidence 3456677888888999999999999987654
No 134
>2cfx_A HTH-type transcriptional regulator LRPC; transcriptional regulation, DNA binding, FFRP; 2.4A {Bacillus subtilis} SCOP: a.4.5.32 d.58.4.2
Probab=29.53 E-value=68 Score=23.73 Aligned_cols=39 Identities=5% Similarity=0.074 Sum_probs=30.2
Q ss_pred HHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 191 LLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 191 LLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
||-.|.++.......+-+.+|++...+.+.++.+.+.||
T Consensus 10 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~ 48 (144)
T 2cfx_A 10 IIEELKKDSRLSMRELGRKIKLSPPSVTERVRQLESFGI 48 (144)
T ss_dssp HHHHHHHCSCCCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 444454555556667888899999999999999988876
No 135
>1xmk_A Double-stranded RNA-specific adenosine deaminase; winged helix-turn-helix, RNA editing, interferon, ADAR1, hydrolase; 0.97A {Homo sapiens} SCOP: a.4.5.19
Probab=29.46 E-value=51 Score=22.73 Aligned_cols=39 Identities=5% Similarity=0.171 Sum_probs=29.2
Q ss_pred HHHHHhhCCCchHHHHHHhCCCCHH-HHHHHHHHhhcCCC
Q 026896 191 LLLGIWSEKESAGHKILATLGFNDE-KAKEIAKSVSSRSY 229 (231)
Q Consensus 191 LLLALl~d~~~~~~~iL~~lGvd~~-~l~e~l~~i~~~~~ 229 (231)
||.-|.......+..+-+.+|++.. .+.+.+..+.+.|+
T Consensus 16 IL~~Lk~~g~~ta~eiA~~Lgit~~~aVr~hL~~Le~eGl 55 (79)
T 1xmk_A 16 ICDYLFNVSDSSALNLAKNIGLTKARDINAVLIDMERQGD 55 (79)
T ss_dssp HHHHHHHTCCEEHHHHHHHHCGGGHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCcCHHHHHHHcCCCcHHHHHHHHHHHHHCCC
Confidence 3433344445666778888999999 99999999988776
No 136
>4b8x_A SCO5413, possible MARR-transcriptional regulator; winged helix motif; HET: CME; 1.25A {Streptomyces coelicolor}
Probab=29.24 E-value=1.4e+02 Score=21.92 Aligned_cols=29 Identities=10% Similarity=0.001 Sum_probs=25.3
Q ss_pred chHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 201 SAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 201 ~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.....+-..+|++...+-..++.+-++||
T Consensus 52 ~t~~eLa~~l~~~~~tvs~~v~~Le~~Gl 80 (147)
T 4b8x_A 52 LPMSKIGERLMVHPTSVTNTVDRLVRSGL 80 (147)
T ss_dssp EEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHHCCCHHHHHHHHHHHHhCCC
Confidence 45567888899999999999999999887
No 137
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=29.18 E-value=69 Score=21.50 Aligned_cols=35 Identities=9% Similarity=-0.093 Sum_probs=30.6
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhC
Q 026896 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSE 198 (231)
Q Consensus 163 S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d 198 (231)
..++..+...|...|.+.+. ..|+.+|+.-|+-..
T Consensus 34 GADi~~l~~eAa~~ai~~~~-~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 34 GAVIAAIMQEAGLRAVRKNR-YVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHhcc-CCcCHHHHHHHHHHH
Confidence 46789999999999998888 899999999888765
No 138
>2w25_A Probable transcriptional regulatory protein; transcription regulation, mutant, RV3291C, Glu104Ala, DNA-binding; 2.15A {Mycobacterium tuberculosis} PDB: 2vbw_A* 2vbx_A* 2vby_A* 2vbz_A* 2vc0_A 2vc1_A 2w24_A 2ivm_A 2w29_A 2qz8_A
Probab=29.01 E-value=67 Score=23.86 Aligned_cols=39 Identities=10% Similarity=0.180 Sum_probs=30.1
Q ss_pred HHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 191 LLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 191 LLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
||..|..+.......+-+.+|++...+.+.++.+.+.||
T Consensus 12 iL~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~ 50 (150)
T 2w25_A 12 LVRELAADGRATLSELATRAGLSVSAVQSRVRRLESRGV 50 (150)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 444444455556667888899999999999999988876
No 139
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=28.88 E-value=79 Score=22.08 Aligned_cols=27 Identities=11% Similarity=0.043 Sum_probs=21.5
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHh
Q 026896 169 ALDWAFNEKLKSGESGEITTNHLLLGIW 196 (231)
Q Consensus 169 vLe~A~~~A~~~g~~~~I~teHLLLALl 196 (231)
+...|+..|...+. ..|..+|++.|+=
T Consensus 47 l~~~A~~~a~~~kR-kTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 47 ITSEASERCHQEKR-KTINGEDILFAMS 73 (93)
T ss_dssp HHHHHHHHHHHTTC-SSBCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCC-CccCHHHHHHHHH
Confidence 33446677777888 8999999999985
No 140
>3kp7_A Transcriptional regulator TCAR; multiple drug resistance, biofilm, transcription regulation, binding, transcription regulator; 2.30A {Staphylococcus epidermidis RP62A} PDB: 3kp3_A* 3kp4_A* 3kp5_A* 3kp2_A* 3kp6_A
Probab=28.56 E-value=64 Score=23.56 Aligned_cols=41 Identities=17% Similarity=0.153 Sum_probs=32.5
Q ss_pred HHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
--++|..| ..+......+-..+|++...+...++.+.+.||
T Consensus 40 q~~iL~~l-~~~~~t~~eLa~~l~~~~~~vs~~l~~Le~~Gl 80 (151)
T 3kp7_A 40 QSHVLNML-SIEALTVGQITEKQGVNKAAVSRRVKKLLNAEL 80 (151)
T ss_dssp HHHHHHHH-HHSCBCHHHHHHHHCSCSSHHHHHHHHHHHTTS
T ss_pred HHHHHHHH-HcCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 34466666 666666778888899999999999999988887
No 141
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=28.48 E-value=30 Score=24.84 Aligned_cols=32 Identities=16% Similarity=0.001 Sum_probs=22.1
Q ss_pred HHHHHHHHHHHHHcCCCCcCHHHHHHHHhccC
Q 026896 90 IRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (231)
Q Consensus 90 ~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~ 121 (231)
.++...|.+.|+..+-..|.+.||-+++-.++
T Consensus 47 ~el~~~A~~~a~~~krktI~~~di~~av~~~e 78 (98)
T 1jfi_A 47 ESLLKKACQVTQSRNAKTMTTSHLKQCIELEG 78 (98)
T ss_dssp HHHHHHHHHHHHTC---CBCHHHHHTTCC---
T ss_pred HHHHHHHHHHHHHcCCCeecHHHHHHHHhcCc
Confidence 34567788889999999999999999997654
No 142
>3ri2_A Transcriptional regulator, PADR-like family; PSI-biology, midwest center for structural genomics, MCSG, transcription regulator; 2.10A {Eggerthella lenta} PDB: 4ejo_A
Probab=28.46 E-value=73 Score=23.52 Aligned_cols=41 Identities=10% Similarity=0.186 Sum_probs=33.5
Q ss_pred HHHHHHHHhhCCCchHHHHHHh-----CCCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILAT-----LGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~-----lGvd~~~l~e~l~~i~~~~~ 229 (231)
.+.++|+++. ...++..+.+. ++++...+...++.+.+.||
T Consensus 22 l~~~IL~lL~-~p~~GYei~~~l~~~~~~is~gtlY~~L~rLe~~Gl 67 (123)
T 3ri2_A 22 LVMLVLSQLR-EPAYGYALVKSLADHGIPIEANTLYPLMRRLESQGL 67 (123)
T ss_dssp HHHHHHHHTT-SCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHc-CCCCHHHHHHHHHHhCCCCCcchHHHHHHHHHHCCC
Confidence 5678889998 77777777665 48999999999999988876
No 143
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=28.00 E-value=68 Score=23.51 Aligned_cols=37 Identities=5% Similarity=-0.130 Sum_probs=31.5
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCC
Q 026896 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGT 122 (231)
Q Consensus 86 T~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~ 122 (231)
...+.++...|...|...|-..|+.+.+.+++=.++.
T Consensus 38 ~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~ 74 (111)
T 3b0c_T 38 ERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGL 74 (111)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCC
Confidence 4556778889999999999999999999999976643
No 144
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1
Probab=27.69 E-value=3.1e+02 Score=24.03 Aligned_cols=91 Identities=8% Similarity=-0.088 Sum_probs=57.8
Q ss_pred CCChHHHHHHHHHHhcCCCCcCCCCCCCccCHHHHHHHHHHHHHHHH-cCCCCCCCHHH--HHHHHhhC--CCchHHHHH
Q 026896 133 GITLFKVREETLNLLGKSDLFFFSPERPPLTEQAQRALDWAFNEKLK-SGESGEITTNH--LLLGIWSE--KESAGHKIL 207 (231)
Q Consensus 133 gid~~~lr~~l~~~L~~~~~~~~~~~~~~~S~~l~~vLe~A~~~A~~-~g~~~~I~teH--LLLALl~d--~~~~~~~iL 207 (231)
+.+++...+++.+.+...-.. .....-.+.++.+.....-.. ... --++... +|..|.+. +......+-
T Consensus 354 ~~t~~eal~~~~~~~~~~l~~-----~~~~~~~l~~~~~~~~~~~~~~~~~-~~lt~~q~~vl~~l~~~~~~~~~~~~l~ 427 (487)
T 1hsj_A 354 RQTVDEALAAAQTNAAAEFMS-----KINDINDLVNATFQVKKFFRDTKKK-FNLNYEEIYILNHILRSESNEISSKEIA 427 (487)
T ss_dssp SSCHHHHHHHHHHHHTCCCCC-----CCCSHHHHHHHHHHHHHHHHHHSSS-CCCCHHHHHHHHHHHTCSCSEEEHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHh-cCCCHHHHHHHHHHHhCCCCCcCHHHHH
Confidence 368887777777777654432 233334444444444333322 333 3466653 45555555 445667888
Q ss_pred HhCCCCHHHHHHHHHHhhcCCC
Q 026896 208 ATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 208 ~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
..++++...+-..|+.+.++||
T Consensus 428 ~~~~~~~~~~t~~~~~le~~g~ 449 (487)
T 1hsj_A 428 KCSEFKPYYLTKALQKLKDLKL 449 (487)
T ss_dssp HSSCCCHHHHHHHHHHHHTTTT
T ss_pred HHHCCCHHHHHHHHHHHHHCCC
Confidence 8899999999999999999987
No 145
>3jw4_A Transcriptional regulator, MARR/EMRR family; DNA-binding protein, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.10A {Clostridium acetobutylicum} SCOP: a.4.5.0
Probab=27.64 E-value=58 Score=23.73 Aligned_cols=41 Identities=7% Similarity=0.205 Sum_probs=26.4
Q ss_pred HHHHHHHhhC--CCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSE--KESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d--~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-.+|..|... +......+-..+|++...+...++.+-+.||
T Consensus 44 ~~vL~~l~~~~~~~~t~~eLa~~l~~~~~~vs~~l~~L~~~Gl 86 (148)
T 3jw4_A 44 GRMIGYIYENQESGIIQKDLAQFFGRRGASITSMLQGLEKKGY 86 (148)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHC------CHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCCCCCHHHHHHHHCCChhHHHHHHHHHHHCCC
Confidence 4566666664 4456677888899999999999999988887
No 146
>2pjp_A Selenocysteine-specific elongation factor; SELB, protein-RNA complex, elongation factor, winged- helix, bulge, translation/RNA complex; 2.30A {Escherichia coli}
Probab=27.41 E-value=1.4e+02 Score=21.51 Aligned_cols=87 Identities=8% Similarity=0.023 Sum_probs=50.3
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcCCCCcCCCCCCCcc-CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCch
Q 026896 124 TTAKFLRANGITLFKVREETLNLLGKSDLFFFSPERPPL-TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESA 202 (231)
Q Consensus 124 ~a~kiL~~~gid~~~lr~~l~~~L~~~~~~~~~~~~~~~-S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~ 202 (231)
....+...+|++...+++.+........-.. ......+ ++.+.++.+....+....|. |+
T Consensus 22 ~~~~la~~~~~~~~~~~~~l~~l~~~G~l~~-i~~~~~~~~~~~~~~~~~l~~~~~~~~~---it--------------- 82 (121)
T 2pjp_A 22 WVRDLAKETGTDEQAMRLTLRQAAQQGIITA-IVKDRYYRNDRIVEFANMIRDLDQECGS---TC--------------- 82 (121)
T ss_dssp EHHHHHHHTTCCHHHHHHHHHHHHHTTSEEE-EETTEEEEHHHHHHHHHHHHHHHHHHSS---EE---------------
T ss_pred CHHHHHHHhCCCHHHHHHHHHHHHHCCCEEE-ecCCceECHHHHHHHHHHHHHHHHHCCC---cc---------------
Confidence 5678999999999998888776665433221 1233344 45555555555555555544 22
Q ss_pred HHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 203 GHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 203 ~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
...+=..+|++..-+...++.+.+.|+
T Consensus 83 ~ae~Rd~lg~sRK~ai~lLE~~Dr~g~ 109 (121)
T 2pjp_A 83 AADFRDRLGVGRKLAIQILEYFDRIGF 109 (121)
T ss_dssp HHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHCCcHHHHHHHHHHHhhcCC
Confidence 223333447777755555555555443
No 147
>2dql_A PEX protein; circadian clock associated protein, circadian clock protein; 1.70A {Anabaena SP}
Probab=27.32 E-value=65 Score=23.35 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=30.5
Q ss_pred HHHH-HHHHhhCCCchHHHHHHhC-------CCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHL-LLGIWSEKESAGHKILATL-------GFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHL-LLALl~d~~~~~~~iL~~l-------Gvd~~~l~e~l~~i~~~~~ 229 (231)
.+.+ +|+++.+.+.++..+.+.+ +++...+...++.+.+.||
T Consensus 22 l~~~~IL~lL~~~~~~Gyei~~~l~~~~~~~~is~gtLY~~L~rLe~~Gl 71 (115)
T 2dql_A 22 VAICYILYVLLQGESYGTELIQQLETEHPTYRLSDTVLYSAIKFLEDNRA 71 (115)
T ss_dssp HHHHHHHHHHTTSCBCHHHHHHHHHHHCTTEECCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHcCCCCCCcchHHHHHHHHHHCCC
Confidence 3444 7778877667666654443 5899999999999888775
No 148
>1sd4_A Penicillinase repressor; BLAI, MECI, methicillin, B-lactam, DNA binding PR; 2.00A {Staphylococcus aureus} SCOP: a.4.5.39 PDB: 1xsd_A
Probab=26.82 E-value=61 Score=23.03 Aligned_cols=41 Identities=12% Similarity=0.332 Sum_probs=32.3
Q ss_pred HHHHHHHhhCCCchHHHHHHhCC----CCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATLG----FNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~lG----vd~~~l~e~l~~i~~~~~ 229 (231)
.++|..||+.+......+...++ +++..+...++.+-+.||
T Consensus 13 ~~vL~~L~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGl 57 (126)
T 1sd4_A 13 WDVMNIIWDKKSVSANEIVVEIQKYKEVSDKTIRTLITRLYKKEI 57 (126)
T ss_dssp HHHHHHHHHSSSEEHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCCHHHHHHHHhhcCCCChhhHHHHHHHHHHCCc
Confidence 46788888876666677777765 589999999999888876
No 149
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=26.71 E-value=57 Score=22.71 Aligned_cols=25 Identities=12% Similarity=0.098 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHH
Q 026896 167 QRALDWAFNEKLKSGESGEITTNHLL 192 (231)
Q Consensus 167 ~~vLe~A~~~A~~~g~~~~I~teHLL 192 (231)
++++.+|..+|..-|. ++|..+||=
T Consensus 46 ~EAv~RA~~~a~~e~~-~~le~~~LE 70 (81)
T 3b0b_C 46 REAAARAARQAQAEDL-EKVDIEHVE 70 (81)
T ss_dssp HHHHHHHHHHHHHTTC-SEECHHHHH
T ss_pred HHHHHHHHHHHHhCCC-CeecHHHHH
Confidence 4566677777777788 899999984
No 150
>2fsw_A PG_0823 protein; alpha-beta structure, helix-turn-helix, winged-helix-turn-HE structural genomics, PSI, protein structure initiative; HET: MSE; 2.16A {Porphyromonas gingivalis} SCOP: a.4.5.69
Probab=26.49 E-value=99 Score=21.58 Aligned_cols=40 Identities=8% Similarity=0.100 Sum_probs=30.7
Q ss_pred HHHHHHHhhCCCchHHHHHHhC-CCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATL-GFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~l-Gvd~~~l~e~l~~i~~~~~ 229 (231)
-.+|..|. +.......+-..+ |++...+...++.+.+.|+
T Consensus 28 ~~IL~~L~-~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~Gl 68 (107)
T 2fsw_A 28 LLIIFQIN-RRIIRYGELKRAIPGISEKMLIDELKFLCGKGL 68 (107)
T ss_dssp HHHHHHHT-TSCEEHHHHHHHSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHH-hCCcCHHHHHHHcccCCHHHHHHHHHHHHHCCC
Confidence 34555665 4446667888889 5999999999999988775
No 151
>1z7u_A Hypothetical protein EF0647; winged-helix-turn-helix, MARR, structural genomics, PSI, Pro structure initiative; 2.20A {Enterococcus faecalis} SCOP: a.4.5.69
Probab=26.48 E-value=87 Score=22.15 Aligned_cols=40 Identities=8% Similarity=0.203 Sum_probs=31.3
Q ss_pred HHHHHHHhhCCCchHHHHHHhC-CCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWSEKESAGHKILATL-GFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~d~~~~~~~iL~~l-Gvd~~~l~e~l~~i~~~~~ 229 (231)
-.+|..|.+ .......+-..+ |++...+...++.+.+.||
T Consensus 25 ~~IL~~L~~-~~~~~~eLa~~l~~is~~tvs~~L~~Le~~Gl 65 (112)
T 1z7u_A 25 LSLMDELFQ-GTKRNGELMRALDGITQRVLTDRLREMEKDGL 65 (112)
T ss_dssp HHHHHHHHH-SCBCHHHHHHHSTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHh-CCCCHHHHHHHhccCCHHHHHHHHHHHHHCCC
Confidence 345666654 446667888899 9999999999999888775
No 152
>2pmy_A RAS and EF-hand domain-containing protein; rasef, calcium-binding domain, structural genomics, structural genomics consortium, SGC; 2.30A {Homo sapiens}
Probab=26.30 E-value=1.3e+02 Score=19.93 Aligned_cols=53 Identities=9% Similarity=0.033 Sum_probs=37.5
Q ss_pred CccCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhh
Q 026896 160 PPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVS 225 (231)
Q Consensus 160 ~~~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~ 225 (231)
..++++-..-+..++.....-|+ ++|+.+.+..+|- .+|++.+.+.+.++.+.
T Consensus 19 ~~l~~~~~~~l~~~F~~~D~d~~-G~I~~~El~~~l~------------~~g~~~~~~~~~~~~~D 71 (91)
T 2pmy_A 19 ADGDGEELARLRSVFAACDANRS-GRLEREEFRALCT------------ELRVRPADAEAVFQRLD 71 (91)
T ss_dssp CHHHHHHHHHHHHHHHHHCTTCS-SSEEHHHHHHHHH------------HTTCCHHHHHHHHHHHC
T ss_pred ccCCHHHHHHHHHHHHHHCCCCC-CCCcHHHHHHHHH------------HcCcCHHHHHHHHHHhC
Confidence 45778888888999988888888 8999888765543 33455555655555543
No 153
>2dbb_A Putative HTH-type transcriptional regulator PH006; ASNC family, helix-turn-helix (HTH) domain, structural genom NPPSFA; 2.00A {Pyrococcus horikoshii}
Probab=25.76 E-value=83 Score=23.29 Aligned_cols=39 Identities=5% Similarity=0.004 Sum_probs=29.3
Q ss_pred HHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 191 LLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 191 LLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
||..|-++.......+-+.+|++...+.+.++.+.+.|+
T Consensus 14 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~ 52 (151)
T 2dbb_A 14 LVKILSENSRLTYRELADILNTTRQRIARRIDKLKKLGI 52 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHTTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 444444444455667888899999999999999887775
No 154
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=25.59 E-value=87 Score=20.98 Aligned_cols=37 Identities=14% Similarity=-0.083 Sum_probs=30.7
Q ss_pred hhc-HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhcc
Q 026896 84 KWS-ARAIRSFAMAELEARKLKYPNTGTEAFLMGILVE 120 (231)
Q Consensus 84 kfT-~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~ 120 (231)
.|| .++.++...|...|.+.+...|+.+|+..++-..
T Consensus 31 G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 31 SLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 354 6788888999999999998999999988887654
No 155
>2y75_A HTH-type transcriptional regulator CYMR; DNA binding protein; 2.00A {Bacillus subtilis}
Probab=25.15 E-value=1.2e+02 Score=21.88 Aligned_cols=28 Identities=7% Similarity=0.135 Sum_probs=22.9
Q ss_pred hHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 202 AGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 202 ~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
....+-..+|++...+.+.+..+.+.||
T Consensus 28 s~~ela~~~~i~~~~v~~il~~L~~~Gl 55 (129)
T 2y75_A 28 SLKSIAQTNNLSEHYLEQLVSPLRNAGL 55 (129)
T ss_dssp CHHHHHHHTTSCHHHHHHHHHHHHHTTS
T ss_pred CHHHHHHHHCcCHHHHHHHHHHHHHCCc
Confidence 4456777899999999999999888775
No 156
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=24.84 E-value=1.1e+02 Score=21.41 Aligned_cols=35 Identities=14% Similarity=0.092 Sum_probs=26.6
Q ss_pred hhcHHHHHHHHHH------------HHHHHHcCCCCcCHHHHHHHHh
Q 026896 84 KWSARAIRSFAMA------------ELEARKLKYPNTGTEAFLMGIL 118 (231)
Q Consensus 84 kfT~~a~~vl~~A------------~~~A~~~~~~~I~~eHLLlaLL 118 (231)
+++.++..++..| ...|...+-..|..+|++.|+=
T Consensus 27 ~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~ 73 (93)
T 1n1j_A 27 KIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS 73 (93)
T ss_dssp EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH
Confidence 5676666666554 4567788999999999999983
No 157
>2kko_A Possible transcriptional regulatory protein (possibly ARSR-family); NESG, DNA-binding, transcription regulation, WHTH, homodimer; NMR {Mycobacterium bovis} PDB: 3gw2_A
Probab=24.76 E-value=64 Score=22.78 Aligned_cols=57 Identities=18% Similarity=0.046 Sum_probs=38.0
Q ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 169 ALDWAFNEKLKSGESGEITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 169 vLe~A~~~A~~~g~~~~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.++.........++ .+. ..||..|. ++......+-+.+|++...+...++.+.+.|+
T Consensus 11 ~~~~~~~~~~al~~--~~r-~~IL~~L~-~~~~s~~eLa~~lgis~stvs~~L~~L~~~Gl 67 (108)
T 2kko_A 11 LLDQVARVGKALAN--GRR-LQILDLLA-QGERAVEAIATATGMNLTTASANLQALKSGGL 67 (108)
T ss_dssp HHHHHHHHHHHHTT--STT-HHHHHHHT-TCCEEHHHHHHHHTCCHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHhCC--HHH-HHHHHHHH-cCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 34444444455555 333 34555554 45556678888999999999999999887665
No 158
>4fx0_A Probable transcriptional repressor protein; helix-turn-helix, DNA binding, transcription regulator; 2.70A {Mycobacterium tuberculosis} PDB: 4fx4_A*
Probab=24.57 E-value=1.9e+02 Score=21.20 Aligned_cols=60 Identities=20% Similarity=0.243 Sum_probs=35.9
Q ss_pred HHHHHHHHHHHHHH-cCCCCCCCHH--HHHHHHhhCCC-----chHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 166 AQRALDWAFNEKLK-SGESGEITTN--HLLLGIWSEKE-----SAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 166 l~~vLe~A~~~A~~-~g~~~~I~te--HLLLALl~d~~-----~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
+.+.+...++.+.+ +| ++.. .+|..|...+. .....+-..+|++...+-..++.+-+.||
T Consensus 14 a~r~~~~~~~~~l~~~g----Lt~~q~~vL~~l~~~~~~~~~~~t~~eLa~~l~~~~~tvsr~v~~Le~~gl 81 (148)
T 4fx0_A 14 AARQLGQAYDRALRPSG----LTNTQFSTLAVISLSEGSAGIDLTMSELAARIGVERTTLTRNLEVMRRDGL 81 (148)
T ss_dssp HHHHHHHHHHHHHGGGT----CCHHHHHHHHHHHC---------CHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHHHHHHHHcC----CCHHHHHHHHHHHHhcCCCCCCcCHHHHHHHHCCChhhHHHHHHHHHHCCC
Confidence 33444444444432 32 4443 34455554332 23457778899999999999999988876
No 159
>1xma_A Predicted transcriptional regulator; southea collaboratory for structural genomics, secsg, protein struc initiative, PSI; 2.30A {Clostridium thermocellum} SCOP: a.4.5.61
Probab=24.49 E-value=80 Score=23.92 Aligned_cols=43 Identities=14% Similarity=0.241 Sum_probs=32.8
Q ss_pred CHHHHHHHHhhCCCchHHHHHHhC--------CCCHHHHHHHHHHhhcCCC
Q 026896 187 TTNHLLLGIWSEKESAGHKILATL--------GFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 187 ~teHLLLALl~d~~~~~~~iL~~l--------Gvd~~~l~e~l~~i~~~~~ 229 (231)
....++|++|.+....+..+.+.+ +++...+...++.+.+.||
T Consensus 41 ~~~~~IL~~L~~~~~~gyeI~~~l~~~~~~~~~is~gtLy~~L~rLE~~Gl 91 (145)
T 1xma_A 41 YVDTIILSLLIEGDSYGYEISKNIRIKTDELYVIKETTLYSAFARLEKNGY 91 (145)
T ss_dssp THHHHHHHHHHHCCEEHHHHHHHHHHHHTTSCCCCHHHHHHHHHHHHHTTS
T ss_pred cHHHHHHHHHHhCCCCHHHHHHHHHHhhCCccCcChhHHHHHHHHHHHCCC
Confidence 367777777766556666666555 6999999999999988876
No 160
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=24.48 E-value=85 Score=22.04 Aligned_cols=26 Identities=8% Similarity=-0.027 Sum_probs=19.4
Q ss_pred HHHHHHHHHHHHHcCCCCCCCHHHHHH
Q 026896 167 QRALDWAFNEKLKSGESGEITTNHLLL 193 (231)
Q Consensus 167 ~~vLe~A~~~A~~~g~~~~I~teHLLL 193 (231)
++++.+|..+|..-|+ ++|+.+||=-
T Consensus 50 ~EAv~RA~~~a~~e~~-~~le~e~LEk 75 (84)
T 4dra_E 50 VEAAVRGVRQAQAEDA-LRVDVDQLEK 75 (84)
T ss_dssp HHHHHHHHHHHHHTTC-SSBCHHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CcccHHHHHH
Confidence 4566677777777777 8999999843
No 161
>1i1g_A Transcriptional regulator LRPA; helix-turn-helix, LRP/ASNC family; 2.90A {Pyrococcus furiosus} SCOP: a.4.5.32 d.58.4.2
Probab=24.26 E-value=75 Score=23.11 Aligned_cols=39 Identities=13% Similarity=0.225 Sum_probs=28.6
Q ss_pred HHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 191 LLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 191 LLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
||..|..+.......+-+.+|++...+.+.++.+.+.|+
T Consensus 9 il~~L~~~~~~~~~ela~~lg~s~~tv~~~l~~L~~~G~ 47 (141)
T 1i1g_A 9 ILEILEKDARTPFTEIAKKLGISETAVRKRVKALEEKGI 47 (141)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 444444444455667888899999999999999877665
No 162
>1u2w_A CADC repressor, cadmium efflux system accessory protein; LEAD, SOFT metal ION resistance, ARSR/SM family, DNA binding protein; 1.90A {Staphylococcus aureus} SCOP: a.4.5.5 PDB: 3f72_A
Probab=24.24 E-value=95 Score=22.35 Aligned_cols=40 Identities=13% Similarity=0.177 Sum_probs=30.7
Q ss_pred HHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 190 HLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 190 HLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.||..|..++......+-..+|++...+...++.+.+.|+
T Consensus 46 ~IL~~L~~~~~~s~~eLa~~l~is~stvs~~L~~L~~~Gl 85 (122)
T 1u2w_A 46 KITYALCQDEELCVCDIANILGVTIANASHHLRTLYKQGV 85 (122)
T ss_dssp HHHHHHHHSSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHCCCcCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 4555555455566678888899999999999999887765
No 163
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=24.20 E-value=1.5e+02 Score=19.84 Aligned_cols=32 Identities=6% Similarity=-0.023 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHH
Q 026896 86 SARAIRSFAMAELEARKLKYPNTGTEAFLMGI 117 (231)
Q Consensus 86 T~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaL 117 (231)
-..+.+++..|..+|...|...|+.+-+=||+
T Consensus 32 ~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi 63 (68)
T 1taf_A 32 FRYVTSILDDAKVYANHARKKTIDLDDVRLAT 63 (68)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHH
Confidence 35567788999999999999999999988876
No 164
>2pg4_A Uncharacterized protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, DNA binding protein; HET: MSE CIT; 2.21A {Aeropyrum pernix} SCOP: a.4.5.48
Probab=24.06 E-value=67 Score=21.85 Aligned_cols=40 Identities=13% Similarity=0.136 Sum_probs=30.6
Q ss_pred HHHHHHhhCC-CchHHHHHHhCCCCHHH-HHHHHHHhhcCCC
Q 026896 190 HLLLGIWSEK-ESAGHKILATLGFNDEK-AKEIAKSVSSRSY 229 (231)
Q Consensus 190 HLLLALl~d~-~~~~~~iL~~lGvd~~~-l~e~l~~i~~~~~ 229 (231)
.+|..+...+ ......+-+.+|++... +-..++.+.+.||
T Consensus 19 ~~L~~l~~~~~~~t~~eLa~~l~is~~t~vs~~l~~Le~~Gl 60 (95)
T 2pg4_A 19 PTLLEFEKKGYEPSLAEIVKASGVSEKTFFMGLKDRLIRAGL 60 (95)
T ss_dssp HHHHHHHHTTCCCCHHHHHHHHCCCHHHHHTTHHHHHHHTTS
T ss_pred HHHHHHHhcCCCCCHHHHHHHHCCCchHHHHHHHHHHHHCCC
Confidence 3455555554 46667888889999999 9999999988876
No 165
>1bja_A Transcription regulatory protein MOTA; activation domain, middle mode transcription, alpha helical structure, transcription regulation; 2.19A {Enterobacteria phage T4} SCOP: a.4.5.9 PDB: 1i1s_A
Probab=23.85 E-value=1.3e+02 Score=21.48 Aligned_cols=44 Identities=7% Similarity=0.046 Sum_probs=35.4
Q ss_pred CCHHHHHHHHhhCCCchHHHHHH-hCCCCHHHHHHHHHHhhcCCC
Q 026896 186 ITTNHLLLGIWSEKESAGHKILA-TLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 186 I~teHLLLALl~d~~~~~~~iL~-~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.+...||..|-..+......+-. .+++|...+-..++.+-+.||
T Consensus 16 ~~QfsiL~~L~~~~~~t~~~Lae~~l~~drstvsrnl~~L~r~Gl 60 (95)
T 1bja_A 16 EKTATILITIAKKDFITAAEVREVHPDLGNAVVNSNIGVLIKKGL 60 (95)
T ss_dssp HHHHHHHHHHHHSTTBCHHHHHHTCTTSCHHHHHHHHHHHHTTTS
T ss_pred HHHHHHHHHHHHCCCCCHHHHHHHHhcccHHHHHHHHHHHHHCCC
Confidence 44556667776766666777888 889999999999999999987
No 166
>3nqo_A MARR-family transcriptional regulator; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE PG4; 2.20A {Clostridium difficile}
Probab=23.76 E-value=78 Score=24.46 Aligned_cols=41 Identities=17% Similarity=0.344 Sum_probs=31.4
Q ss_pred HHHHHHHhh--CCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWS--EKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~--d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
-++|..|.. .+......+-..+|++...+...++.+-+.||
T Consensus 44 ~~vL~~L~~~~~~~~t~~eLa~~l~is~~tvs~~l~~Le~~Gl 86 (189)
T 3nqo_A 44 YMTILSILHLPEEETTLNNIARKMGTSKQNINRLVANLEKNGY 86 (189)
T ss_dssp HHHHHHHHHSCGGGCCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhccCCCcCHHHHHHHHCCCHHHHHHHHHHHHHCCC
Confidence 345556665 23456667888899999999999999998887
No 167
>2cg4_A Regulatory protein ASNC; DNA binding, FFRP, LRP family, transcription, DNA- binding, transcription regulation; 2.4A {Escherichia coli} SCOP: a.4.5.32 d.58.4.2
Probab=23.64 E-value=71 Score=23.76 Aligned_cols=39 Identities=10% Similarity=0.170 Sum_probs=29.3
Q ss_pred HHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 191 LLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 191 LLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
||-.|.++.......+-+.+|++...+.+.++.+.+.|+
T Consensus 13 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~ 51 (152)
T 2cg4_A 13 ILEALMGNARTAYAELAKQFGVSPETIHVRVEKMKQAGI 51 (152)
T ss_dssp HHHHHHHCTTSCHHHHHHHHTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHcCC
Confidence 444444555556667888899999999999999887775
No 168
>2p5v_A Transcriptional regulator, LRP/ASNC family; NMB0573, structu genomics; 1.99A {Neisseria meningitidis} PDB: 2p6s_A 2p6t_A
Probab=23.62 E-value=95 Score=23.37 Aligned_cols=39 Identities=5% Similarity=0.048 Sum_probs=28.7
Q ss_pred HHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 191 LLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 191 LLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
||-.|..+.......+-+.+|++...+.+.++.+.+.||
T Consensus 15 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~ 53 (162)
T 2p5v_A 15 ILQVLQENGRLTNVELSERVALSPSPCLRRLKQLEDAGI 53 (162)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 333333444445567778899999999999999988876
No 169
>1p6r_A Penicillinase repressor; transcription regulation, DNA-binding, winged helix protein, bacterial resistance to antibiotics; NMR {Bacillus licheniformis} SCOP: a.4.5.39 PDB: 2p7c_B
Probab=23.57 E-value=91 Score=20.51 Aligned_cols=40 Identities=8% Similarity=0.279 Sum_probs=26.3
Q ss_pred HHHHHHhhCCCchHHHHHHhCC----CCHHHHHHHHHHhhcCCC
Q 026896 190 HLLLGIWSEKESAGHKILATLG----FNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 190 HLLLALl~d~~~~~~~iL~~lG----vd~~~l~e~l~~i~~~~~ 229 (231)
.+|..|+..+......+...++ ++...+...++.+.+.||
T Consensus 13 ~vL~~L~~~~~~t~~ei~~~l~~~~~~s~~Tv~~~l~rL~~kGl 56 (82)
T 1p6r_A 13 EVMKVIWKHSSINTNEVIKELSKTSTWSPKTIQTMLLRLIKKGA 56 (82)
T ss_dssp HHHHHHHTSSSEEHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCCHHHHHHHHhhcCCccHHHHHHHHHHHHHCCC
Confidence 4566666554445555555553 678888888888877765
No 170
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=23.36 E-value=1.1e+02 Score=20.78 Aligned_cols=35 Identities=9% Similarity=-0.073 Sum_probs=30.4
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhhC
Q 026896 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWSE 198 (231)
Q Consensus 163 S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~d 198 (231)
..++..+...|...|.+.+. ..|+.+|+.-|+-.-
T Consensus 37 GADl~~l~~eAa~~a~r~~~-~~i~~~df~~Al~~v 71 (88)
T 3vlf_B 37 GAELRSVCTEAGMFAIRARR-KVATEKDFLKAVDKV 71 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHSC-SSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcc-ccCCHHHHHHHHHHH
Confidence 46789999999999988888 899999999998654
No 171
>3tl8_B Effector protein hopab2; plant immunity, solanum lycopersicum, triggered immunity, bacterial pathogenesis, transferase-LIG complex; HET: TPO; 2.50A {Pseudomonas syringae PV}
Probab=23.34 E-value=81 Score=23.29 Aligned_cols=26 Identities=15% Similarity=0.148 Sum_probs=21.9
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcC
Q 026896 124 TTAKFLRANGITLFKVREETLNLLGK 149 (231)
Q Consensus 124 ~a~kiL~~~gid~~~lr~~l~~~L~~ 149 (231)
.+-+-|.+.|||.+.|+.++++++-.
T Consensus 42 ~AL~~L~qqGvdmerLraAle~~im~ 67 (117)
T 3tl8_B 42 AALRGLVQQGVNLEHLRTALERHVMQ 67 (117)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 45677888999999999999998754
No 172
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=23.27 E-value=1.2e+02 Score=20.65 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=28.0
Q ss_pred HHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhc
Q 026896 87 ARAIRSFAMAELEARKLKYPNTGTEAFLMGILV 119 (231)
Q Consensus 87 ~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~ 119 (231)
.++.++...|...|.+.+...|+.+|+.-|+-.
T Consensus 38 ADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 38 AELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 70 (88)
T ss_dssp HHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 568888898999999988888999998888754
No 173
>2cyy_A Putative HTH-type transcriptional regulator PH151; structural genomics, pyrococcus horikosii OT3, NPPSFA; HET: MSE GLN; 1.80A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2
Probab=23.05 E-value=81 Score=23.47 Aligned_cols=39 Identities=8% Similarity=0.142 Sum_probs=29.1
Q ss_pred HHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 191 LLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 191 LLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
||-.|.++.......+-+.+|++...+.+.++.+.+.|+
T Consensus 12 il~~L~~~~~~s~~ela~~lg~s~~tv~~~l~~L~~~G~ 50 (151)
T 2cyy_A 12 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGV 50 (151)
T ss_dssp HHHHHHHCTTCCHHHHHHHHCSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 444444455555667888899999999999999887765
No 174
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=22.99 E-value=1.2e+02 Score=23.16 Aligned_cols=67 Identities=4% Similarity=-0.096 Sum_probs=0.0
Q ss_pred cccccccCCccccccCCcchhHHHhhhCCCCCCCCCCCCCCchhhcHHHHHHHHHHHHH------------H-HHcCCCC
Q 026896 41 LIRPQLNSSRFVTKYHRSSATATVSFSLPTTVKPETASPDKIPKWSARAIRSFAMAELE------------A-RKLKYPN 107 (231)
Q Consensus 41 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~kfT~~a~~vl~~A~~~------------A-~~~~~~~ 107 (231)
++.+++.....+|..|-+++ =. .+|+.+ +.+..+.-++..|.++ | ...+...
T Consensus 9 ~~s~~~~~~~~LPlaRIKrI--------MK-~dpdv~------~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKt 73 (140)
T 2byk_A 9 PVERPPTAETFLPLSRVRTI--------MK-SSMDTG------LITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEA 73 (140)
T ss_dssp ----------------------------CC-SSSSCS------CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCE
T ss_pred CCCCCcccCCCCCHHHHHHH--------Hh-cCcccc------cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcc
Q ss_pred cCHHHHHHHHhccCC
Q 026896 108 TGTEAFLMGILVEGT 122 (231)
Q Consensus 108 I~~eHLLlaLL~~~~ 122 (231)
|...||..++-..+.
T Consensus 74 I~~~Dl~~AV~~~e~ 88 (140)
T 2byk_A 74 LKYEHLSQVVNKNKN 88 (140)
T ss_dssp ECHHHHHHHHHTCST
T ss_pred cCHHHHHHHHhcCch
No 175
>3jth_A Transcription activator HLYU; transcription factor, RTXA, DNA-binding, transcription regulation; 2.00A {Vibrio vulnificus}
Probab=22.77 E-value=91 Score=21.15 Aligned_cols=39 Identities=10% Similarity=0.104 Sum_probs=29.4
Q ss_pred HHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 190 HLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 190 HLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.||..|. +.......+-+.+|++...+...++.+.+.|+
T Consensus 27 ~Il~~L~-~~~~~~~ela~~l~is~~tvs~~L~~L~~~Gl 65 (98)
T 3jth_A 27 QILCMLH-NQELSVGELCAKLQLSQSALSQHLAWLRRDGL 65 (98)
T ss_dssp HHHHHTT-TSCEEHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHh-cCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 3444444 45556778888899999999999999887764
No 176
>2x4h_A Hypothetical protein SSO2273; transcription; 2.30A {Sulfolobus solfataricus}
Probab=22.71 E-value=1.3e+02 Score=21.61 Aligned_cols=29 Identities=10% Similarity=0.102 Sum_probs=23.7
Q ss_pred chHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 201 SAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 201 ~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.....+-+.+|++...+.+.++.+.+.||
T Consensus 32 ~s~~ela~~l~is~~tv~~~l~~Le~~Gl 60 (139)
T 2x4h_A 32 AKINRIAKDLKIAPSSVFEEVSHLEEKGL 60 (139)
T ss_dssp BCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred cCHHHHHHHhCCChHHHHHHHHHHHHCCC
Confidence 34556777889999999999999888876
No 177
>2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens}
Probab=22.58 E-value=97 Score=21.58 Aligned_cols=28 Identities=0% Similarity=-0.040 Sum_probs=23.6
Q ss_pred chHHHHHHhCCCCHHHHHHHHHHhhcCC
Q 026896 201 SAGHKILATLGFNDEKAKEIAKSVSSRS 228 (231)
Q Consensus 201 ~~~~~iL~~lGvd~~~l~e~l~~i~~~~ 228 (231)
..+.+|.+.+|++..++.+.++.+.+++
T Consensus 35 lkageIae~~GvdKKeVdKaik~LKkEg 62 (80)
T 2lnb_A 35 VKLAQLVKECQAPKRELNQVLYRMKKEL 62 (80)
T ss_dssp EEHHHHHHHHTSCHHHHHHHHHHHHHTT
T ss_pred CCHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 3456788899999999999999988765
No 178
>2lf3_A Effector protein hopab3; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=22.39 E-value=77 Score=23.05 Aligned_cols=26 Identities=19% Similarity=0.192 Sum_probs=20.9
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcC
Q 026896 124 TTAKFLRANGITLFKVREETLNLLGK 149 (231)
Q Consensus 124 ~a~kiL~~~gid~~~lr~~l~~~L~~ 149 (231)
.+-+-|.+.|||.+.|+.++++++-.
T Consensus 36 aaL~~L~qqGvdmerLraAle~~i~~ 61 (107)
T 2lf3_A 36 AALQALAQNGINMEDLRAALEAYIVW 61 (107)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 45566777899999999999998743
No 179
>2e1c_A Putative HTH-type transcriptional regulator PH151; DNA-binding, transcriptional regulatory protein, archaeal; HET: DNA; 2.10A {Pyrococcus horikoshii} SCOP: a.4.5.32 d.58.4.2 PDB: 1ri7_A* 2zny_A* 2znz_A*
Probab=22.26 E-value=96 Score=23.94 Aligned_cols=39 Identities=8% Similarity=0.142 Sum_probs=29.2
Q ss_pred HHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 191 LLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 191 LLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
||-+|-.+.......+-+.+|++...+.+.++.+.+.|+
T Consensus 32 IL~~L~~~~~~s~~eLA~~lglS~~tv~~rl~~L~~~G~ 70 (171)
T 2e1c_A 32 IIKILQNDGKAPLREISKITGLAESTIHERIRKLRESGV 70 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 444444455555667888899999999999999888775
No 180
>2lf6_A Effector protein hopab1; type III effector, structural genomics, PSI-biology, protein structure initiative; NMR {Pseudomonas syringae PV}
Probab=22.13 E-value=79 Score=22.79 Aligned_cols=26 Identities=12% Similarity=0.197 Sum_probs=21.4
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcC
Q 026896 124 TTAKFLRANGITLFKVREETLNLLGK 149 (231)
Q Consensus 124 ~a~kiL~~~gid~~~lr~~l~~~L~~ 149 (231)
.+-+-|.+.|||.+.|+.++++++-.
T Consensus 25 aaL~~L~qqGvdmerLr~Al~~~i~~ 50 (101)
T 2lf6_A 25 EALRRLTQEGVDMERLRTSLGRYIMS 50 (101)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHSS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 45566778899999999999998754
No 181
>3fm5_A Transcriptional regulator; MCSG, PF04017, PSI, MARR, structu genomics, protein structure initiative, midwest center for structural genomics; HET: GOL; 2.00A {Rhodococcus jostii}
Probab=21.51 E-value=2.3e+02 Score=20.31 Aligned_cols=69 Identities=12% Similarity=-0.064 Sum_probs=44.1
Q ss_pred HHHHHHHhccCCc-HHHHHHHHcCCChHHHHHHHHHHhcCCCCcC---C---CCCCCccCHHHHHHHHHHHHHHHH
Q 026896 111 EAFLMGILVEGTS-TTAKFLRANGITLFKVREETLNLLGKSDLFF---F---SPERPPLTEQAQRALDWAFNEKLK 179 (231)
Q Consensus 111 eHLLlaLL~~~~s-~a~kiL~~~gid~~~lr~~l~~~L~~~~~~~---~---~~~~~~~S~~l~~vLe~A~~~A~~ 179 (231)
.++|..|...+++ ....+-+.++++...+-..++....+.--.. + ....+.+|+.-+++++........
T Consensus 42 ~~vL~~l~~~~~~~t~~eLa~~l~i~~~tvs~~l~~Le~~Glv~r~~~~~D~R~~~~~LT~~G~~~~~~~~~~~~~ 117 (150)
T 3fm5_A 42 YSVLVLACEQAEGVNQRGVAATMGLDPSQIVGLVDELEERGLVVRTLDPSDRRNKLIAATEEGRRLRDDAKARVDA 117 (150)
T ss_dssp HHHHHHHHHSTTCCCSHHHHHHHTCCHHHHHHHHHHHHTTTSEEC-----------CEECHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCcCHHHHHHHHCCCHhHHHHHHHHHHHCCCEEeeCCccccchheeeECHHHHHHHHHHHHHHHH
Confidence 3344444444444 6788889999999999988887765532211 0 112377899999988887765543
No 182
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=21.50 E-value=1.2e+02 Score=20.79 Aligned_cols=34 Identities=9% Similarity=0.001 Sum_probs=28.7
Q ss_pred CHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHhh
Q 026896 163 TEQAQRALDWAFNEKLKSGESGEITTNHLLLGIWS 197 (231)
Q Consensus 163 S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl~ 197 (231)
..++..+...|...|.+.+. ..|+.+|+..|+-.
T Consensus 47 GADL~~l~~eAa~~alr~~~-~~I~~~df~~Al~~ 80 (86)
T 2krk_A 47 GAEVKGVCTEAGMYALRERR-VHVTQEDFEMAVAK 80 (86)
T ss_dssp HHHHHHHHHHHHHHHHHTTC-SEECHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Confidence 46789999999999988877 89999998888753
No 183
>1c07_A Protein (epidermal growth factor receptor pathway substrate 15); calcium binding, signaling domain, NPF binding, FW binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6
Probab=21.41 E-value=1.9e+02 Score=19.39 Aligned_cols=34 Identities=12% Similarity=0.033 Sum_probs=24.3
Q ss_pred cCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHh
Q 026896 162 LTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIW 196 (231)
Q Consensus 162 ~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl 196 (231)
++++-.+-+..++..-.+-|+ ++|+.+.+.-.+-
T Consensus 4 ls~~~~~~~~~~F~~~D~d~d-G~I~~~el~~~l~ 37 (95)
T 1c07_A 4 VSPAEKAKYDEIFLKTDKDMD-GFVSGLEVREIFL 37 (95)
T ss_dssp SCSHHHHHHHHHHHHHCTTCS-SEECHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCC-CcEeHHHHHHHHH
Confidence 455556677788887777788 8898888765543
No 184
>2g9w_A Conserved hypothetical protein; DNA-binding domain, bacterial transcription repressor, DNA B protein; 1.80A {Mycobacterium tuberculosis} SCOP: a.4.5.39
Probab=21.14 E-value=1.2e+02 Score=22.25 Aligned_cols=41 Identities=7% Similarity=0.259 Sum_probs=31.7
Q ss_pred HHHHHHHhh-CCCchHHHHHHhCC----CCHHHHHHHHHHhhcCCC
Q 026896 189 NHLLLGIWS-EKESAGHKILATLG----FNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 189 eHLLLALl~-d~~~~~~~iL~~lG----vd~~~l~e~l~~i~~~~~ 229 (231)
..+|..||. .+......+...++ ++...+...++.+-+.||
T Consensus 12 ~~vL~~L~~~~~~~t~~el~~~l~~~~~~~~~Tvt~~l~rLe~kGl 57 (138)
T 2g9w_A 12 RAVMDHLWSRTEPQTVRQVHEALSARRDLAYTTVMAVLQRLAKKNL 57 (138)
T ss_dssp HHHHHHHHTCSSCEEHHHHHHHHTTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHhccCCCCHHHHHHHHHHHHHCCC
Confidence 456777776 35566677877776 799999999999888876
No 185
>3df8_A Possible HXLR family transcriptional factor; APC89000, structural genomics, midwest center for structural genomics, MCSG; 1.65A {Thermoplasma volcanium} SCOP: a.4.5.0
Probab=21.05 E-value=1.5e+02 Score=20.93 Aligned_cols=39 Identities=8% Similarity=0.079 Sum_probs=29.6
Q ss_pred HHHHHHhhCCCch--HHHHHHhC-CCCHHHHHHHHHHhhcCCC
Q 026896 190 HLLLGIWSEKESA--GHKILATL-GFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 190 HLLLALl~d~~~~--~~~iL~~l-Gvd~~~l~e~l~~i~~~~~ 229 (231)
.||..|. +.... ...+-+.+ |++...+.+.++.+.+.|+
T Consensus 31 ~IL~~L~-~g~~~~~~~eL~~~l~gis~~~ls~~L~~Le~~Gl 72 (111)
T 3df8_A 31 LIISVLG-NGSTRQNFNDIRSSIPGISSTILSRRIKDLIDSGL 72 (111)
T ss_dssp HHHHHHT-SSSSCBCHHHHHHTSTTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHh-cCCCCCCHHHHHHHccCCCHHHHHHHHHHHHHCCC
Confidence 4555555 43344 67888899 9999999999999888775
No 186
>2lz1_A Nuclear factor erythroid 2-related factor 2; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}
Probab=20.81 E-value=73 Score=22.72 Aligned_cols=39 Identities=8% Similarity=0.247 Sum_probs=27.4
Q ss_pred CCCHHHHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCC
Q 026896 185 EITTNHLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRS 228 (231)
Q Consensus 185 ~I~teHLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~ 228 (231)
.++++-|+ .-+......+|++.+++.+++ +.|+.+++||
T Consensus 34 PFsvdqIv----nLpv~eFn~lL~~~~Lt~~Ql-~lIrdiRRRg 72 (90)
T 2lz1_A 34 PFPVEKII----NLPVVDFNEMMSKEQFNEAQL-ALIRDIRRRG 72 (90)
T ss_dssp SSCHHHHH----HSCHHHHHHHHHHSCCCHHHH-HHHHHHHHHS
T ss_pred CCCHHHHH----HCCHHHHHHHHHHcCCCHHHH-HHHHHHHHhh
Confidence 45555443 334445567999999999887 6788888776
No 187
>2ia0_A Putative HTH-type transcriptional regulator PF086; ASNC, PSI, structural genomics, southeast collaboratory for structural genomics; 2.37A {Pyrococcus furiosus}
Probab=20.69 E-value=1.1e+02 Score=23.59 Aligned_cols=39 Identities=10% Similarity=0.019 Sum_probs=29.4
Q ss_pred HHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 191 LLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 191 LLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
||-.|-.+.......+-+.+|++...+.+.++.+.+.|+
T Consensus 22 IL~~L~~~~~~s~~eLA~~lglS~~tv~~~l~~L~~~G~ 60 (171)
T 2ia0_A 22 ILRLLKKDARLTISELSEQLKKPESTIHFRIKKLQERGV 60 (171)
T ss_dssp HHHHHHHCTTCCHHHHHHHHTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHcCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 344444444456667888899999999999999988875
No 188
>1q1h_A TFE, transcription factor E, TFE; TFIIE, transcription initiation, preinitiation complex, RNA polymerase II, transcription bubble; 2.90A {Sulfolobus solfataricus} SCOP: a.4.5.41
Probab=20.66 E-value=99 Score=21.53 Aligned_cols=40 Identities=10% Similarity=0.189 Sum_probs=29.1
Q ss_pred HHHHHHhhCC-CchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 190 HLLLGIWSEK-ESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 190 HLLLALl~d~-~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.|+..++... ......+-+.+|++...+.+.++.+...|+
T Consensus 22 ~Il~~l~~~g~~~s~~eLa~~lgvs~~tV~~~L~~L~~~Gl 62 (110)
T 1q1h_A 22 DVLRILLDKGTEMTDEEIANQLNIKVNDVRKKLNLLEEQGF 62 (110)
T ss_dssp HHHHHHHHHCSCBCHHHHHHTTTSCHHHHHHHHHHHHHHTS
T ss_pred HHHHHHHHcCCCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 4455555433 345567888899999999999999877665
No 189
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=20.65 E-value=94 Score=31.39 Aligned_cols=33 Identities=3% Similarity=0.067 Sum_probs=29.4
Q ss_pred HHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccC
Q 026896 89 AIRSFAMAELEARKLKYPNTGTEAFLMGILVEG 121 (231)
Q Consensus 89 a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~ 121 (231)
+.++++.|-+.|+..++..|+|.|+.+|+-.+.
T Consensus 138 ~~~~l~la~~~~~~~~~~~i~p~~~~~ai~~d~ 170 (1049)
T 3ksy_A 138 SADILKLVGNYVRNIRHYEITKQDIKVAMCADK 170 (1049)
T ss_dssp HHHHHHHHHHHHHHTTCCBCCHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHcCCceecCccccccccCCH
Confidence 357889999999999999999999999997764
No 190
>1eh2_A EPS15; calcium binding, signaling domain, NPF binding, EF-hand, EH domain; NMR {Homo sapiens} SCOP: a.39.1.6 PDB: 2jxc_A 1f8h_A 1ff1_A
Probab=20.60 E-value=1.6e+02 Score=20.71 Aligned_cols=35 Identities=9% Similarity=0.060 Sum_probs=22.0
Q ss_pred CccCHHHHHHHHHHHHHHHHcCCCCCCCHHHHHHHHh
Q 026896 160 PPLTEQAQRALDWAFNEKLKSGESGEITTNHLLLGIW 196 (231)
Q Consensus 160 ~~~S~~l~~vLe~A~~~A~~~g~~~~I~teHLLLALl 196 (231)
..++++-..-+..++..-.+ |+ ++|+.+.+--.|.
T Consensus 7 w~ls~~e~~~~~~~F~~~D~-~d-G~Is~~el~~~l~ 41 (106)
T 1eh2_A 7 WAVKPEDKAKYDAIFDSLSP-VN-GFLSGDKVKPVLL 41 (106)
T ss_dssp CSSCHHHHHHHHHHHTTSCC-SS-SCCBHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhCC-CC-CeEcHHHHHHHHH
Confidence 34566666667777766556 77 7777776554443
No 191
>4a5n_A Uncharacterized HTH-type transcriptional regulato; activator, DNA binding, MARR-like; 1.81A {Bacillus subtilis} PDB: 4a5m_A
Probab=20.55 E-value=1.4e+02 Score=22.23 Aligned_cols=41 Identities=2% Similarity=-0.002 Sum_probs=31.7
Q ss_pred HHHHHHHHhhCCCchHHHHHHhC-CCCHHHHHHHHHHhhcCCC
Q 026896 188 TNHLLLGIWSEKESAGHKILATL-GFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 188 teHLLLALl~d~~~~~~~iL~~l-Gvd~~~l~e~l~~i~~~~~ 229 (231)
.--||..|. ........+...+ |++...+...++.+.+.|+
T Consensus 28 ~l~IL~~L~-~g~~rf~eL~~~l~gIs~~~Ls~~L~~Le~~GL 69 (131)
T 4a5n_A 28 KGILFYHMI-DGKKRFNEFRRICPSITQRMLTLQLRELEADGI 69 (131)
T ss_dssp HHHHHHHHT-TSCBCHHHHHHHCTTSCHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHh-cCCcCHHHHHHHhcccCHHHHHHHHHHHHHCCC
Confidence 345666666 4445667888999 9999999999999887775
No 192
>1yyv_A Putative transcriptional regulator; reductive methylation, D lysine, structural genomics, PSI; HET: MLY; 2.35A {Salmonella typhimurium} SCOP: a.4.5.69
Probab=20.39 E-value=1e+02 Score=22.77 Aligned_cols=39 Identities=5% Similarity=0.172 Sum_probs=29.7
Q ss_pred HHHHHHhhCCCchHHHHHHhC-CCCHHHHHHHHHHhhcCCC
Q 026896 190 HLLLGIWSEKESAGHKILATL-GFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 190 HLLLALl~d~~~~~~~iL~~l-Gvd~~~l~e~l~~i~~~~~ 229 (231)
.||..|. +......++-+.+ |++...+-+.++.+.+.||
T Consensus 39 ~IL~~L~-~g~~~~~eLa~~l~gis~~tls~~L~~Le~~Gl 78 (131)
T 1yyv_A 39 LILVALR-DGTHRFSDLRRXMGGVSEXMLAQSLQALEQDGF 78 (131)
T ss_dssp HHHHHGG-GCCEEHHHHHHHSTTCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHH-cCCCCHHHHHHHhccCCHHHHHHHHHHHHHCCc
Confidence 3455555 4446667888899 7999999999999887765
No 193
>1y0u_A Arsenical resistance operon repressor, putative; structural genomics, protein structure initiative, PSI; HET: MSE; 1.60A {Archaeoglobus fulgidus} SCOP: a.4.5.5
Probab=20.34 E-value=96 Score=21.09 Aligned_cols=38 Identities=16% Similarity=0.203 Sum_probs=28.8
Q ss_pred HHHHHHhhCCCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 190 HLLLGIWSEKESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 190 HLLLALl~d~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
.||..| . .......+-+.+|++...+.+.++.+.+.|+
T Consensus 35 ~Il~~L-~-~~~~~~eLa~~l~is~~tv~~~L~~L~~~Gl 72 (96)
T 1y0u_A 35 KILRML-D-KGRSEEEIMQTLSLSKKQLDYHLKVLEAGFC 72 (96)
T ss_dssp HHHHHH-H-TTCCHHHHHHHHTCCHHHHHHHHHHHHHTTS
T ss_pred HHHHHH-c-CCCCHHHHHHHHCcCHHHHHHHHHHHHHCCC
Confidence 455555 3 3355667888899999999999999888775
No 194
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=20.04 E-value=1.6e+02 Score=22.10 Aligned_cols=38 Identities=5% Similarity=-0.060 Sum_probs=32.5
Q ss_pred hcHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHhccCC
Q 026896 85 WSARAIRSFAMAELEARKLKYPNTGTEAFLMGILVEGT 122 (231)
Q Consensus 85 fT~~a~~vl~~A~~~A~~~~~~~I~~eHLLlaLL~~~~ 122 (231)
+...+.+++..|..++...+-..|+.+.+.+++=..+.
T Consensus 77 l~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G~ 114 (121)
T 2ly8_A 77 LKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQGR 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCCC
Confidence 45677888999999999999999999999998865543
No 195
>2h09_A Transcriptional regulator MNTR; transcription regulator, diphtheria toxin, manganese transport, structural genomics, NPPSFA; 2.10A {Escherichia coli}
Probab=20.04 E-value=1.1e+02 Score=22.60 Aligned_cols=31 Identities=16% Similarity=0.264 Sum_probs=25.3
Q ss_pred CCchHHHHHHhCCCCHHHHHHHHHHhhcCCC
Q 026896 199 KESAGHKILATLGFNDEKAKEIAKSVSSRSY 229 (231)
Q Consensus 199 ~~~~~~~iL~~lGvd~~~l~e~l~~i~~~~~ 229 (231)
+......+-..+|++...+.+.++.+.+.||
T Consensus 53 ~~~~~~~la~~l~vs~~tvs~~l~~Le~~Gl 83 (155)
T 2h09_A 53 GEARQVDMAARLGVSQPTVAKMLKRLATMGL 83 (155)
T ss_dssp SCCCHHHHHHHHTSCHHHHHHHHHHHHHTTC
T ss_pred CCcCHHHHHHHhCcCHHHHHHHHHHHHHCCC
Confidence 3445567878899999999999999988876
Done!