Query 026897
Match_columns 231
No_of_seqs 141 out of 1411
Neff 8.1
Searched_HMMs 29240
Date Tue Mar 26 00:56:19 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026897.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026897hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2i68_A Protein EMRE; transmemb 98.5 2.2E-07 7.6E-12 70.8 6.3 69 76-150 34-104 (137)
2 3b5d_A Multidrug transporter E 98.4 7.5E-07 2.6E-11 65.3 7.6 68 76-149 34-103 (110)
3 3mp7_B Preprotein translocase 4.9 3.4E+02 0.011 16.8 1.6 25 121-145 23-47 (61)
4 2hac_A T-cell surface glycopro 4.8 4.8E+02 0.016 14.1 1.9 15 110-124 15-29 (33)
5 2jp3_A FXYD domain-containing 4.6 4.5E+02 0.015 16.7 2.1 15 134-148 23-37 (67)
6 2jo1_A Phospholemman; FXYD1, N 4.6 4.5E+02 0.015 16.9 2.1 15 134-148 22-36 (72)
7 1afo_A Glycophorin A; integral 4.4 5.2E+02 0.018 14.6 2.0 15 134-148 16-30 (40)
8 2zxe_G FXYD10, phospholemman-l 3.8 5.4E+02 0.019 16.6 2.0 15 134-148 25-39 (74)
9 1rh5_B Preprotein translocase 3.5 5E+02 0.017 16.7 1.6 25 121-145 27-51 (74)
10 3n2f_G Na+/K+ ATPase gamma sub 3.4 6.1E+02 0.021 13.4 1.7 15 134-148 16-30 (31)
No 1
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.48 E-value=2.2e-07 Score=70.81 Aligned_cols=69 Identities=22% Similarity=0.220 Sum_probs=52.6
Q ss_pred HHHHHH-HHHHHHHHHhhcccCccchhhh-ccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhhc
Q 026897 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTLY 150 (231)
Q Consensus 76 ~~g~~~-~~~~~~~~~gl~~~sa~~a~il-~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~~ 150 (231)
..+++. .+++++++.++++.+++.+..+ .++.|++++++++++++|+ ++..|++|+.+.++|++++...
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~------ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR------LDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHhcC
Confidence 566666 8999999999999999999888 8999999999999999999 5667899999999999988753
No 2
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.42 E-value=7.5e-07 Score=65.30 Aligned_cols=68 Identities=22% Similarity=0.223 Sum_probs=60.7
Q ss_pred HHHHHH-HHHHHHHHHhhcccCccchhhh-ccchhHHHHHHHHHHhhhccchhhhccchhhHHHHHHHHhHhHhhh
Q 026897 76 GLGLIS-CCVQTCLYVGIGYSSPTLSSAI-VDLTPAFTFILALISRMEKLDLRVQSSLAKSIGTMVSIAGALTVTL 149 (231)
Q Consensus 76 ~~g~~~-~~~~~~~~~gl~~~sa~~a~il-~~l~P~~~~l~a~l~~~E~~~~~~~~~~~~~~g~~l~~~Gi~ll~~ 149 (231)
..++++ .+++.++..++++.+.+.+..+ ..+.|+++.++++++++|+ +++.|++|+.+.+.|++.+..
T Consensus 34 ~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~------~s~~~~~Gi~lIi~Gv~~l~~ 103 (110)
T 3b5d_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQR------LDLPAIIGMMLICAGVLIINL 103 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHhc
Confidence 456666 8889999999999999999888 7999999999999999999 566789999999999998864
No 3
>3mp7_B Preprotein translocase subunit SECE; protein transport, membrane protein complex, preprotein TRAN membrane insertion,; 2.90A {Pyrococcus furiosus}
Probab=4.90 E-value=3.4e+02 Score=16.84 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=14.4
Q ss_pred hccchhhhccchhhHHHHHHHHhHh
Q 026897 121 EKLDLRVQSSLAKSIGTMVSIAGAL 145 (231)
Q Consensus 121 E~~~~~~~~~~~~~~g~~l~~~Gi~ 145 (231)
.|+++++-....+..|+.+.+.|.+
T Consensus 23 ~KPd~~Ef~~iak~~~iG~~i~G~i 47 (61)
T 3mp7_B 23 KKPNWATYKRAAKITGLGIILIGLI 47 (61)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 5655555444445666666666654
No 4
>2hac_A T-cell surface glycoprotein CD3 zeta chain; transmembrane, alpha helix, membrane protein; NMR {Homo sapiens}
Probab=4.78 E-value=4.8e+02 Score=14.11 Aligned_cols=15 Identities=20% Similarity=0.255 Sum_probs=9.5
Q ss_pred HHHHHHHHHhhhccc
Q 026897 110 FTFILALISRMEKLD 124 (231)
Q Consensus 110 ~~~l~a~l~~~E~~~ 124 (231)
..+++..++.+||+.
T Consensus 15 Ygii~T~Ly~R~K~~ 29 (33)
T 2hac_A 15 YGVILTALFLRVKFS 29 (33)
T ss_dssp HHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhh
Confidence 344556778888843
No 5
>2jp3_A FXYD domain-containing ION transport regulator 4; protein, transcription; NMR {Rattus norvegicus}
Probab=4.62 E-value=4.5e+02 Score=16.70 Aligned_cols=15 Identities=27% Similarity=0.399 Sum_probs=10.7
Q ss_pred hHHHHHHHHhHhHhh
Q 026897 134 SIGTMVSIAGALTVT 148 (231)
Q Consensus 134 ~~g~~l~~~Gi~ll~ 148 (231)
+++.++.++|++++.
T Consensus 23 ifA~vLfi~GI~iil 37 (67)
T 2jp3_A 23 IFGGLLCIAGIALAL 37 (67)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHH
Confidence 566677778887765
No 6
>2jo1_A Phospholemman; FXYD1, Na,K-ATPase, micelle, hydrolase regulator; NMR {Homo sapiens}
Probab=4.57 E-value=4.5e+02 Score=16.88 Aligned_cols=15 Identities=33% Similarity=0.401 Sum_probs=10.6
Q ss_pred hHHHHHHHHhHhHhh
Q 026897 134 SIGTMVSIAGALTVT 148 (231)
Q Consensus 134 ~~g~~l~~~Gi~ll~ 148 (231)
+++.++.++|++++.
T Consensus 22 ifA~vLfi~GI~iil 36 (72)
T 2jo1_A 22 VIAGILFILGILIVL 36 (72)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 466677778887765
No 7
>1afo_A Glycophorin A; integral membrane protein, transmembrane helix interactions, membrane protein folding; NMR {Homo sapiens} SCOP: j.35.1.1 PDB: 2kpf_A
Probab=4.43 E-value=5.2e+02 Score=14.57 Aligned_cols=15 Identities=20% Similarity=0.508 Sum_probs=9.8
Q ss_pred hHHHHHHHHhHhHhh
Q 026897 134 SIGTMVSIAGALTVT 148 (231)
Q Consensus 134 ~~g~~l~~~Gi~ll~ 148 (231)
++|+..+++|.+++.
T Consensus 16 I~~vmaGiIG~IllI 30 (40)
T 1afo_A 16 IFGVMAGVIGTILLI 30 (40)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 566666777776654
No 8
>2zxe_G FXYD10, phospholemman-like protein; membrane protein, ION pump, ATPase, K+ binding, haloacid dehydrogenease superfamily, phosphate analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias} PDB: 3a3y_G*
Probab=3.80 E-value=5.4e+02 Score=16.63 Aligned_cols=15 Identities=7% Similarity=0.372 Sum_probs=11.1
Q ss_pred hHHHHHHHHhHhHhh
Q 026897 134 SIGTMVSIAGALTVT 148 (231)
Q Consensus 134 ~~g~~l~~~Gi~ll~ 148 (231)
+++.++.++|++++.
T Consensus 25 ifA~vLfi~GI~iil 39 (74)
T 2zxe_G 25 IVAAVLCVIGIIILL 39 (74)
T ss_dssp HHHHHHHHHHHHHHT
T ss_pred hhHHHHHHHHHHHHH
Confidence 566777788888775
No 9
>1rh5_B Preprotein translocase SECE subunit; protein translocation, SECY, membrane protein, protein channels, protein transport; 3.20A {Methanocaldococcus jannaschii} SCOP: f.23.28.1 PDB: 1rhz_B 2yxq_B 2yxr_B 3dkn_B
Probab=3.49 E-value=5e+02 Score=16.75 Aligned_cols=25 Identities=20% Similarity=0.163 Sum_probs=0.0
Q ss_pred hccchhhhccchhhHHHHHHHHhHh
Q 026897 121 EKLDLRVQSSLAKSIGTMVSIAGAL 145 (231)
Q Consensus 121 E~~~~~~~~~~~~~~g~~l~~~Gi~ 145 (231)
.|.++++-....+..|+.+.+.|.+
T Consensus 27 ~KPdr~EF~~iak~~~iG~~imG~I 51 (74)
T 1rh5_B 27 KKPTKDEYLAVAKVTALGISLLGII 51 (74)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHHH
No 10
>3n2f_G Na+/K+ ATPase gamma subunit transcript variant A; sodium-potassium pump, P-type ATPase, cardiotonic steroids,; HET: PHD; 4.10A {Sus scrofa} PDB: 3n23_G*
Probab=3.42 E-value=6.1e+02 Score=13.43 Aligned_cols=15 Identities=13% Similarity=0.310 Sum_probs=0.0
Q ss_pred hHHHHHHHHhHhHhh
Q 026897 134 SIGTMVSIAGALTVT 148 (231)
Q Consensus 134 ~~g~~l~~~Gi~ll~ 148 (231)
+.+.++.+.|++++.
T Consensus 16 i~a~vLfi~gi~iil 30 (31)
T 3n2f_G 16 IFAALAFIVGLIIIL 30 (31)
T ss_dssp TTHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHhc
Done!