Query 026897
Match_columns 231
No_of_seqs 141 out of 1411
Neff 8.1
Searched_HMMs 13730
Date Tue Mar 26 00:56:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026897.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026897hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 7.4 1.4E+02 0.01 13.9 2.9 18 176-193 2-19 (27)
2 d1vf5c3 f.23.23.1 (C:250-286) 3.4 3.5E+02 0.026 13.7 3.4 31 174-204 4-34 (37)
3 d1rh5b_ f.23.28.1 (B:) Preprot 3.1 2.8E+02 0.02 15.5 1.6 24 121-144 16-39 (56)
4 d1q90a3 f.23.23.1 (A:248-292) 2.7 4.7E+02 0.034 13.7 3.1 29 175-203 4-32 (45)
5 d1xioa_ f.13.1.1 (A:) Sensory 2.5 9E+02 0.065 16.5 14.7 16 106-121 79-94 (226)
6 d2axtl1 f.23.31.1 (L:1-37) Pho 2.3 4.8E+02 0.035 12.9 3.3 20 174-193 16-35 (37)
7 d1gl4a1 d.22.1.2 (A:399-631) D 2.1 2.8E+02 0.02 20.3 0.8 33 90-123 43-75 (233)
8 d2p7tc1 f.14.1.1 (C:86-119) Po 1.9 5.4E+02 0.039 12.2 2.0 7 115-121 27-33 (34)
9 d1g6pa_ b.40.4.5 (A:) Major co 1.7 3.8E+02 0.027 15.0 0.8 8 223-230 21-28 (66)
10 d1jb0l_ f.31.1.1 (L:) Photosys 1.5 1.3E+03 0.092 15.2 4.1 47 178-224 79-125 (151)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=7.38 E-value=1.4e+02 Score=13.88 Aligned_cols=18 Identities=17% Similarity=0.416 Sum_probs=13.8
Q ss_pred hHHHHHHHHHHHHHHHHH
Q 026897 176 IIGGLVLAAGSFFLSLLY 193 (231)
Q Consensus 176 ~~G~~l~L~aa~~~a~~~ 193 (231)
.+|.+.+-++.+.||.|-
T Consensus 2 vlgli~~tl~glf~aayq 19 (27)
T d2e74g1 2 VLGLVFATLGGLFYAAYQ 19 (27)
T ss_dssp HHHHHHHHHHHHHHHHHH
T ss_pred eeeehHHHHHHHHHHHHH
Confidence 357777788888888875
No 2
>d1vf5c3 f.23.23.1 (C:250-286) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Mastigocladus laminosus [TaxId: 83541]}
Probab=3.38 E-value=3.5e+02 Score=13.66 Aligned_cols=31 Identities=10% Similarity=0.061 Sum_probs=23.3
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHhhhhcCCC
Q 026897 174 NWIIGGLVLAAGSFFLSLLYIVQVTFDKTPK 204 (231)
Q Consensus 174 ~~~~G~~l~L~aa~~~a~~~v~~k~~~~~~~ 204 (231)
....|.+..+++.+.--+..++-||-.++..
T Consensus 4 ~Rv~gl~~F~~~v~laQi~lVlKKKQ~EkVQ 34 (37)
T d1vf5c3 4 NRVKWMIAFICLVMLAQLMLILKKKQVEKVQ 34 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTGGGCTTG
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888888888888888777766653
No 3
>d1rh5b_ f.23.28.1 (B:) Preprotein translocase SecE subunit {Archaeon Methanococcus jannaschii [TaxId: 2190]}
Probab=3.14 E-value=2.8e+02 Score=15.51 Aligned_cols=24 Identities=21% Similarity=0.131 Sum_probs=10.4
Q ss_pred hccchhhhccchhhHHHHHHHHhH
Q 026897 121 EKLDLRVQSSLAKSIGTMVSIAGA 144 (231)
Q Consensus 121 E~~~~~~~~~~~~~~g~~l~~~Gi 144 (231)
.|.++++-....+..|+.+.+.|.
T Consensus 16 ~KP~~~Ef~~ia~v~~iG~~i~G~ 39 (56)
T d1rh5b_ 16 KKPTKDEYLAVAKVTALGISLLGI 39 (56)
T ss_dssp ECCCHHHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHHHHHHHHHHHHHHH
Confidence 444444432233444544444444
No 4
>d1q90a3 f.23.23.1 (A:248-292) Cytochrome f subunit of the cytochrome b6f complex, transmembrane anchor {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.69 E-value=4.7e+02 Score=13.72 Aligned_cols=29 Identities=17% Similarity=0.124 Sum_probs=22.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHhhhhcCC
Q 026897 175 WIIGGLVLAAGSFFLSLLYIVQVTFDKTP 203 (231)
Q Consensus 175 ~~~G~~l~L~aa~~~a~~~v~~k~~~~~~ 203 (231)
...|.+..+++.+.--+..|+-||-.++.
T Consensus 4 Rv~gll~F~~~v~laQi~LVLKKKQfEKV 32 (45)
T d1q90a3 4 RIQGLLVFFSFVLLTQVLLVLKKKQFEKV 32 (45)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 46788888888888888888887766554
No 5
>d1xioa_ f.13.1.1 (A:) Sensory rhodopsin {Anabaena sp. PCC 7120 [TaxId: 103690]}
Probab=2.47 E-value=9e+02 Score=16.55 Aligned_cols=16 Identities=19% Similarity=0.144 Sum_probs=11.1
Q ss_pred chhHHHHHHHHHHhhh
Q 026897 106 LTPAFTFILALISRME 121 (231)
Q Consensus 106 l~P~~~~l~a~l~~~E 121 (231)
+.|+....+......+
T Consensus 79 TtPlll~~l~l~~~~~ 94 (226)
T d1xioa_ 79 TTPLLLLSLSWTAMQF 94 (226)
T ss_dssp HHHHHHHHHHHHHTTT
T ss_pred cccHHHHHHHHHHHHh
Confidence 6788888777665443
No 6
>d2axtl1 f.23.31.1 (L:1-37) Photosystem II reaction center protein L, PsbL {Thermosynechococcus elongatus [TaxId: 146786]}
Probab=2.31 E-value=4.8e+02 Score=12.93 Aligned_cols=20 Identities=15% Similarity=0.333 Sum_probs=15.3
Q ss_pred chhHHHHHHHHHHHHHHHHH
Q 026897 174 NWIIGGLVLAAGSFFLSLLY 193 (231)
Q Consensus 174 ~~~~G~~l~L~aa~~~a~~~ 193 (231)
+-.+|.++++.-++.++-|.
T Consensus 16 sLy~GlLlifvl~vLFssYf 35 (37)
T d2axtl1 16 SLYLGLLLILVLALLFSSYF 35 (37)
T ss_dssp HHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHh
Confidence 44678888888888887775
No 7
>d1gl4a1 d.22.1.2 (A:399-631) Domain G2 of nidogen-1 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=2.05 E-value=2.8e+02 Score=20.26 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=27.7
Q ss_pred HhhcccCccchhhhccchhHHHHHHHHHHhhhcc
Q 026897 90 VGIGYSSPTLSSAIVDLTPAFTFILALISRMEKL 123 (231)
Q Consensus 90 ~gl~~~sa~~a~il~~l~P~~~~l~a~l~~~E~~ 123 (231)
.++..+++..+..+..+.|+... ++|+|=+|.-
T Consensus 43 taIs~IP~~~G~~L~~L~~ig~~-igWlFA~e~~ 75 (233)
T d1gl4a1 43 TAISTIPETVGYSLLPLAPIGGI-IGWMFAVEQD 75 (233)
T ss_dssp EEEESCCHHHHGGGTTCTHHHHH-HHHHTCEECT
T ss_pred EEccCCChhHhhhhhhhhhhcCc-eeeeEEeecC
Confidence 56788889999999999998876 6899988883
No 8
>d2p7tc1 f.14.1.1 (C:86-119) Potassium channel protein {Streptomyces lividans [TaxId: 1916]}
Probab=1.86 E-value=5.4e+02 Score=12.22 Aligned_cols=7 Identities=14% Similarity=0.041 Sum_probs=2.9
Q ss_pred HHHHhhh
Q 026897 115 ALISRME 121 (231)
Q Consensus 115 a~l~~~E 121 (231)
.|+..+|
T Consensus 27 twfvgre 33 (34)
T d2p7tc1 27 TWFVGRE 33 (34)
T ss_dssp HHHHHHH
T ss_pred HHhhccc
Confidence 3444443
No 9
>d1g6pa_ b.40.4.5 (A:) Major cold shock protein {Thermotoga maritima [TaxId: 2336]}
Probab=1.69 E-value=3.8e+02 Score=14.95 Aligned_cols=8 Identities=38% Similarity=1.041 Sum_probs=5.2
Q ss_pred cCcccccc
Q 026897 223 SGKELFLH 230 (231)
Q Consensus 223 ~~~~~~~~ 230 (231)
.|.++|+|
T Consensus 21 ~g~diFvH 28 (66)
T d1g6pa_ 21 EGGDVFVH 28 (66)
T ss_dssp TSCBCBBC
T ss_pred CCceEEEE
Confidence 45677776
No 10
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=1.46 E-value=1.3e+03 Score=15.18 Aligned_cols=47 Identities=11% Similarity=0.102 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhcCCCCCchhHHHHHHHhhhhhccC
Q 026897 178 GGLVLAAGSFFLSLLYIVQVTFDKTPKIPTYSLIDFWDFYLPYISSG 224 (231)
Q Consensus 178 G~~l~L~aa~~~a~~~v~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (231)
...++++.+.|.++|.....+-....+.+--|.-.+-++.-.|...|
T Consensus 79 aiglv~Ilt~~L~lYg~~sf~~~~~~~d~l~t~~gWs~F~~GF~~Gg 125 (151)
T d1jb0l_ 79 GIALILVATACLAAYGLVSFQKGGSSSDPLKTSEGWSQFTAGFFVGA 125 (151)
T ss_dssp HHHHHHHHHHHHHHHHHHHTSSCCCSSCGGGSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccCCCCCCCcccccCcccHHHhhchhhhcc
Done!