BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026899
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3IU7|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Mn
Inhibitor A02
pdb|3IU8|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T03
pdb|3IU9|A Chain A, M. Tuberculosis Methionine Aminopeptidase With Ni
Inhibitor T07
Length = 288
Score = 183 bits (464), Expect = 7e-47, Method: Compositional matrix adjust.
Identities = 94/159 (59%), Positives = 110/159 (69%), Gaps = 3/159 (1%)
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 130
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 7 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 64
Query: 131 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 190
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS
Sbjct: 65 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 124
Query: 191 LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
+ DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV
Sbjct: 125 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLV 163
>pdb|1Y1N|A Chain A, Identification Of Sh3 Motif In M. Tuberculosis Methionine
Aminopeptidase Suggests A Mode Of Interaction With The
Ribosome
pdb|1YJ3|A Chain A, Crystal Structure Analysis Of Product Bound Methionine
Aminopeptidase Type 1c From Mycobacterium Tuberculosis
Length = 291
Score = 182 bits (463), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 94/159 (59%), Positives = 110/159 (69%), Gaps = 3/159 (1%)
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 130
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 10 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 67
Query: 131 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 190
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS
Sbjct: 68 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 127
Query: 191 LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
+ DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV
Sbjct: 128 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLV 166
>pdb|3PKA|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y02, In Mn
Form
pdb|3PKB|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y16, In Mn
Form
pdb|3PKC|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y08, In Mn
Form
pdb|3PKD|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Mn
Form
pdb|3PKE|A Chain A, M. Tuberculosis Metap With Bengamide Analog Y10, In Ni
Form
Length = 285
Score = 182 bits (463), Expect = 9e-47, Method: Compositional matrix adjust.
Identities = 94/159 (59%), Positives = 110/159 (69%), Gaps = 3/159 (1%)
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 130
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 4 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 61
Query: 131 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 190
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS CTS+NE ICHGIPDS
Sbjct: 62 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCCTSLNEVICHGIPDSTV 121
Query: 191 LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
+ DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV
Sbjct: 122 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLV 160
>pdb|3ROR|A Chain A, Crystal Structure Of C105s Mutant Of Mycobacterium
Tuberculosis Methionine Aminopeptidase
Length = 291
Score = 179 bits (455), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 93/159 (58%), Positives = 109/159 (68%), Gaps = 3/159 (1%)
Query: 72 RKRLRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-SGPEVHDEKGIECMRVSGRLAAQVL 130
R L PG +SP RPVP+ I RP YV KP S P V + IE MRV+GR+AA L
Sbjct: 10 RTALSPGVLSPTRPVPNWIARPEYVG--KPAAQEGSEPWVQTPEVIEKMRVAGRIAAGAL 67
Query: 131 EYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSRA 190
AG V PG+TTDE+D+ H+ ++DNGAYPS LGY GFPKS TS+NE ICHGIPDS
Sbjct: 68 AEAGKAVAPGVTTDELDRIAHEYLVDNGAYPSTLGYKGFPKSCSTSLNEVICHGIPDSTV 127
Query: 191 LEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
+ DGD +NIDVT Y+ G HGDT+ATF GDV DE R LV
Sbjct: 128 ITDGDIVNIDVTAYIGGVHGDTNATFPAGDVADEHRLLV 166
>pdb|2B3H|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I With A Third Cobalt In The Active Site
pdb|2B3K|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
I In The Holo Form
pdb|2B3L|A Chain A, Crystal Structure Of Type I Human Methionine
Aminopeptidase In The Apo Form
pdb|2GZ5|A Chain A, Human Type 1 Methionine Aminopeptidase In Complex With
Ovalicin At 1.1 Ang
pdb|2NQ6|A Chain A, Crystal Structure Of Human Methionine Aminopeptidase Type
1 In Complex With
3-Tert-Butoxycarbonylaminopyridine-2-Carboxylic Acid
Thiazole-2- Ylamide
pdb|2NQ7|A Chain A, Crystal Structure Of Type 1 Human Methionine
Aminopeptidase In Complex With
3-(2,2-Dimethylpropionylamino)pyridine-2-Carboxylic Acid
Thiazole-2-Ylamide
Length = 329
Score = 167 bits (424), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 86/172 (50%), Positives = 113/172 (65%), Gaps = 8/172 (4%)
Query: 67 EPNRRRKRLRPGK-VSPHRPVPDHIPRPPYVN-------SQKPIGIVSGPEVHDEKGIEC 118
+P R +LRP + P RPVP +I RP Y + S++ + S ++ + IE
Sbjct: 24 DPYRYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEG 83
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVN 178
MR+ RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVN
Sbjct: 84 MRLVCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVN 143
Query: 179 ECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
E ICHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+
Sbjct: 144 EVICHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQ 195
>pdb|4FLI|A Chain A, Human Metap1 With Bengamide Analog Y16, In Mn Form
pdb|4FLJ|A Chain A, Human Metap1 With Bengamide Analog Y08, In Mn Form
pdb|4FLK|A Chain A, Human Metap1 With Bengamide Analog Y10, In Mn Form
pdb|4FLL|A Chain A, Human Metap1 With Bengamide Analog Yz6, In Mn Form
Length = 326
Score = 166 bits (420), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 111/169 (65%), Gaps = 8/169 (4%)
Query: 70 RRRKRLRPGK-VSPHRPVPDHIPRPPYVN-------SQKPIGIVSGPEVHDEKGIECMRV 121
R +LRP + P RPVP +I RP Y + S++ + S ++ + IE MR+
Sbjct: 3 RYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRL 62
Query: 122 SGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 181
RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVNE I
Sbjct: 63 VCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVI 122
Query: 182 CHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
CHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+
Sbjct: 123 CHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQ 171
>pdb|2G6P|A Chain A, Crystal Structure Of Truncated (Delta 1-89) Human
Methionine Aminopeptidase Type 1 In Complex With Pyridyl
Pyrimidine Derivative
Length = 304
Score = 165 bits (418), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 85/169 (50%), Positives = 111/169 (65%), Gaps = 8/169 (4%)
Query: 70 RRRKRLRPGK-VSPHRPVPDHIPRPPYVN-------SQKPIGIVSGPEVHDEKGIECMRV 121
R +LRP + P RPVP +I RP Y + S++ + S ++ + IE MR+
Sbjct: 2 RYTGKLRPHYPLMPTRPVPSYIQRPDYADHPLGMSESEQALKGTSQIKLLSSEDIEGMRL 61
Query: 122 SGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECI 181
RLA +VL+ A ++KPG+TT+EID AVH I YPSPL Y FPKS CTSVNE I
Sbjct: 62 VCRLAREVLDVAAGMIKPGVTTEEIDHAVHLACIARNCYPSPLNYYNFPKSCCTSVNEVI 121
Query: 182 CHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
CHGIPD R L++GD +N+D+T+Y NGYHGD + TFF G+VDD AR LV+
Sbjct: 122 CHGIPDRRPLQEGDIVNVDITLYRNGYHGDLNETFFVGEVDDGARKLVQ 170
>pdb|4FUK|A Chain A, Aminopeptidase From Trypanosoma Brucei
pdb|4FUK|B Chain B, Aminopeptidase From Trypanosoma Brucei
Length = 337
Score = 160 bits (406), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 87/174 (50%), Positives = 109/174 (62%), Gaps = 22/174 (12%)
Query: 75 LRPGKVSPHRPVPDHIPRPPYVNSQKPIGIVSGPE---------------VHDE--KGIE 117
LRPGK++P R VP HI RP Y + G VS E +HD+ K E
Sbjct: 12 LRPGKITPRRAVPSHILRPDYADRA---GGVSASEEKDRGSKVKVYNIQFLHDDSKKTAE 68
Query: 118 CMRVSG--RLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
R+ +L+ +VL+ A KPGITTDE+D+ VH+ ++ YPSPL Y GFPKSVCT
Sbjct: 69 IQRIKTVCQLSREVLDIATAAAKPGITTDELDRIVHEATVERNMYPSPLNYYGFPKSVCT 128
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
SVNE ICHGIPDSR LE+GD +NIDV+ YLNG+HGD + T F G DD++ LV
Sbjct: 129 SVNEVICHGIPDSRELEEGDILNIDVSSYLNGFHGDLNETVFIGRPDDDSVRLV 182
>pdb|3S6B|A Chain A, Crystal Structure Of Methionine Aminopeptidase 1b From
Plasmodium Falciparum, Pf10_0150
Length = 368
Score = 151 bits (382), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 79/164 (48%), Positives = 104/164 (63%), Gaps = 8/164 (4%)
Query: 75 LRPGKVSPHRPVPDHIPRPPYVNSQKPIGIV-----SGPEVHDEKGIECMRVSGRLAAQV 129
+RP +S VP HI RP Y S P + S V++E+ I+ +R + L +
Sbjct: 63 VRPWPLSKINHVPSHIERPDYAISSIPESELIYKRKSDIYVNNEEEIQRIREACILGRKT 122
Query: 130 LEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTSVNECICHGIPDSR 189
L+YA TLV PG+TTDEID+ VH+ II N AYPS L Y FPKS CTSVNE +CHGIPD R
Sbjct: 123 LDYAHTLVSPGVTTDEIDRKVHEFIIKNNAYPSTLNYYKFPKSCCTSVNEIVCHGIPDYR 182
Query: 190 ALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDD---EARNLVK 230
L+ GD INID++V+ G H D + T+F GD++D E + LV+
Sbjct: 183 PLKSGDIINIDISVFYKGVHSDLNETYFVGDINDVPKEGKELVE 226
>pdb|3MX6|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
pdb|3MX6|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii Bound To Methionine
Length = 262
Score = 128 bits (322), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 85/122 (69%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
++H EK MR +G+LAA+ L++ VKP +TT+ ++ H I + A P+PL Y G
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 169 FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
FPKS+CTS+N +CHGIP+ + L++GD +NIDVTV L+G++GDTS ++ GDV + + L
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 229 VK 230
++
Sbjct: 127 IQ 128
>pdb|3MR1|A Chain A, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|B Chain B, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|C Chain C, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
pdb|3MR1|D Chain D, Crystal Structure Of Methionine Aminopeptidase From
Ricketts Prowazekii
Length = 252
Score = 128 bits (321), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 55/122 (45%), Positives = 85/122 (69%)
Query: 109 EVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGG 168
++H EK MR +G+LAA+ L++ VKP +TT+ ++ H I + A P+PL Y G
Sbjct: 7 KIHTEKDFIKMRAAGKLAAETLDFITDHVKPNVTTNSLNDLCHNFITSHNAIPAPLNYKG 66
Query: 169 FPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
FPKS+CTS+N +CHGIP+ + L++GD +NIDVTV L+G++GDTS ++ GDV + + L
Sbjct: 67 FPKSICTSINHVVCHGIPNDKPLKNGDIVNIDVTVILDGWYGDTSRMYYVGDVAIKPKRL 126
Query: 229 VK 230
++
Sbjct: 127 IQ 128
>pdb|4MAT|A Chain A, E.Coli Methionine Aminopeptidase His79ala Mutant
Length = 278
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG 219
S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 116
>pdb|2GU4|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU4|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
0.5, Di-Metalated
pdb|2GU5|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU5|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
1, Di-Metalated
pdb|2GU6|A Chain A, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU6|B Chain B, E. Coli Methionine Aminopeptidase In Complex With Nlep, 1:
2, Di-metalated
pdb|2GU7|A Chain A, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
pdb|2GU7|B Chain B, E. Coli Methionine Aminopeptidase Unliganded, 1:0.5
Length = 263
Score = 118 bits (295), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG 219
S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 115
>pdb|4A6V|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
pdb|4A6V|B Chain B, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 265
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG 219
S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 116
>pdb|3MAT|A Chain A, E.coli Methionine Aminopeptidase Transition-state
Inhibitor Complex
Length = 265
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG 219
S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 116
>pdb|1XNZ|A Chain A, Crystal Structure Of Mn(Ii) Form Of E. Coli. Methionine
Aminopeptidase In Complex With
5-(2-Chlorophenyl)furan-2- Carboxylic Acid
pdb|2BB7|A Chain A, Mn Form Of E. Coli Methionine Aminopeptidase In Complex
With A Quinolinyl Sulfonamide Inhibitor
pdb|2EVC|A Chain A, Crystal Structure Of E. Coli. Methionine Amino Peptidase
In Complex With 5-(2-(trifluoromethyl)phenyl)furan-2-
Carboxylic Acid
pdb|2EVM|A Chain A, Crystal Structure Of Methionine Aminopeptidase In Complex
With 5-(2,5-Dichlorophenyl)furan-2-Carboxylic Acid
pdb|2EVO|A Chain A, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|2EVO|B Chain B, Crystal Structure Of Methionine Amino Peptidase In Complex
With N-Cyclopentyl-N-(Thiazol-2-Yl)oxalamide
pdb|1MAT|A Chain A, Structure Of The Cobalt-Dependent Methionine
Aminopeptidase From Escherichia Coli: A New Type Of
Proteolytic Enzyme
Length = 264
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG 219
S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 116
>pdb|2GG0|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG2|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG3|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG5|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG7|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG8|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GG9|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGB|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2GGC|A Chain A, Novel Bacterial Methionine Aminopeptidase Inhibitors
pdb|2Q93|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B21
pdb|2Q95|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A05
pdb|2Q96|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A18
Length = 263
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG 219
S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 115
>pdb|2P99|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye6
Length = 261
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG 219
S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 115
>pdb|2GTX|A Chain A, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|2GTX|B Chain B, Structural Basis Of Catalysis By Mononuclear Methionine
Aminopeptidase
pdb|3D27|A Chain A, E. Coli Methionine Aminopeptidase With Fe Inhibitor W29
Length = 261
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 8 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 67
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG 219
S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 68 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 113
>pdb|2MAT|A Chain A, E.Coli Methionine Aminopeptidase At 1.9 Angstrom
Resolution
pdb|1YVM|A Chain A, E. Coli Methionine Aminopeptidase In Complex With
Thiabendazole
pdb|4A6W|A Chain A, X-Ray Structures Of Oxazole Hydroxamate Ecmetap-Mn
Complexes
Length = 264
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 11 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 70
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG 219
S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 71 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 116
>pdb|1C27|A Chain A, E. Coli Methionine Aminopeptidase:norleucine Phosphonate
Complex
pdb|1C21|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Complex
pdb|1C22|A Chain A, E. Coli Methionine Aminopeptidase: Trifluoromethionine
Complex
pdb|1C23|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphonate
Complex
pdb|1C24|A Chain A, E. Coli Methionine Aminopeptidase: Methionine Phosphinate
Complex
Length = 263
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG 219
S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 115
>pdb|2P98|A Chain A, E. Coli Methionine Aminopeptidase Monometalated With
Inhibitor Ye7
pdb|2P9A|A Chain A, E. Coli Methionine Aminopeptidase Dimetalated With
Inhibitor Ye6
pdb|2Q92|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
B23
pdb|2Q94|A Chain A, E. Coli Methionine Aminopeptidase Mn-Form With Inhibitor
A04
Length = 262
Score = 117 bits (294), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 58/106 (54%), Positives = 77/106 (72%), Gaps = 2/106 (1%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMII-DNGAYPSPLGYGGFPKSVC 174
IE MRV+GRLAA+VLE VKPG++T E+D+ + I+ + A + LGY G+PKSVC
Sbjct: 10 IEKMRVAGRLAAEVLEMIEPYVKPGVSTGELDRICNDYIVNEQHAVSACLGYHGYPKSVC 69
Query: 175 TSVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG 219
S+NE +CHGIP D++ L+DGD +NIDVTV +G+HGDTS F G
Sbjct: 70 ISINEVVCHGIPDDAKLLKDGDIVNIDVTVIKDGFHGDTSKMFIVG 115
>pdb|3TAV|A Chain A, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
pdb|3TAV|B Chain B, Crystal Structure Of A Methionine Aminopeptidase From
Mycobacterium Abscessus
Length = 286
Score = 93.2 bits (230), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 68/113 (60%), Gaps = 3/113 (2%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
++ M +G + L K G++T E+D+ +I + GA PS LGY GFP S+C+
Sbjct: 40 LDAMAAAGSIVGAALVAVRDAAKAGVSTLELDQVAESVIREAGAVPSFLGYHGFPASICS 99
Query: 176 SVNECICHGIPDSRA-LEDGDTINIDVTVYLNGYHGDTSATFFCGDV--DDEA 225
SVN+ + HGIP + A L DGD ++ID L+G+HGD++ TF G V DEA
Sbjct: 100 SVNDQVVHGIPSATAVLADGDLVSIDCGAILDGWHGDSAWTFAVGTVIPSDEA 152
>pdb|1QXW|A Chain A, Crystal Structure Of Staphyloccocus Aureus In Complex With
An Aminoketone Inhibitor 54135.
pdb|1QXY|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle 618
pdb|1QXZ|A Chain A, Crystal Structure Of S. Aureus Methionine Aminopeptidase
In Complex With A Ketoheterocycle Inhibitor 119
Length = 252
Score = 92.4 bits (228), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 44/120 (36%), Positives = 66/120 (55%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
V E+ ++ ++ G + A+V KPGITT E+D ++ + GA +P+ F
Sbjct: 3 VKTEEELQALKEIGYICAKVRNTMQAATKPGITTKELDNIAKELFEEYGAISAPIHDENF 62
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLV 229
P C SVNE + HGIP R + +GD +NIDV+ NGY+ DT +F G+ DD + V
Sbjct: 63 PGQTCISVNEEVAHGIPSKRVIREGDLVNIDVSALKNGYYADTGISFVVGESDDPMKQKV 122
>pdb|3TB5|A Chain A, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|B Chain B, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
pdb|3TB5|C Chain C, Crystal Structure Of The Enterococcus Faecalis Methionine
Aminopeptidase Apo Form
Length = 264
Score = 82.4 bits (202), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/115 (36%), Positives = 64/115 (55%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE M SG L A V + T +KPGIT+ +I+ V I +G + +GY G+ + C
Sbjct: 10 IEMMDESGELLADVHRHLRTFIKPGITSWDIEVFVRDFIESHGGVAAQIGYEGYKYATCC 69
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
S+N+ ICHG P + L+DGD I +D+ V L G D+ ++ G+ E L++
Sbjct: 70 SINDEICHGFPRKKVLKDGDLIKVDMCVDLKGAISDSCWSYVVGESTPEIDRLME 124
>pdb|1O0X|A Chain A, Crystal Structure Of Methionine Aminopeptidase (Tm1478)
From Thermotoga Maritima At 1.90 A Resolution
Length = 262
Score = 75.5 bits (184), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 63/116 (54%), Gaps = 1/116 (0%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
IE M+ +G+ A L ++ PG T +++ V ++ P+ GYGG+ + C
Sbjct: 22 IEKMKKAGKAVAVALREVRKVIVPGKTAWDVETLVLEIFKKLRVKPAFKGYGGYKYATCV 81
Query: 176 SVNECICHGIP-DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
SVNE + HG+P + ++GD +++DV G +GD + T+ G+ D+ + LV+
Sbjct: 82 SVNEEVVHGLPLKEKVFKEGDIVSVDVGAVYQGLYGDAAVTYIVGETDERGKELVR 137
Score = 27.3 bits (59), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 4/43 (9%)
Query: 112 DEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMI 154
DE+G E +RV+ +VLE A ++KPGI ++ + + +
Sbjct: 129 DERGKELVRVT----REVLEKAIKMIKPGIRLGDVSHCIQETV 167
>pdb|1XGS|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGS|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGM|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1XGN|B Chain B, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
pdb|1WKM|A Chain A, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1WKM|B Chain B, The Product Bound Form Of The Mn(Ii)loaded Methionine
Aminopeptidase From Hyperthermophile Pyrococcus Furiosus
pdb|1XGO|A Chain A, Methionine Aminopeptidase From Hyperthermophile Pyrococcus
Furiosus
Length = 295
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTS 176
E + +G +A +V E A L +PG+ E+ +++ +MI++ G P+ FP V S
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLS 55
Query: 177 VNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
+NE H P D+ L++GD + IDV V+++G+ DT+ T G +DE K
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDELMEAAK 112
>pdb|2DFI|A Chain A, Crystal Structure Of Pf-Map(1-292)-C
pdb|2DFI|B Chain B, Crystal Structure Of Pf-Map(1-292)-C
Length = 301
Score = 63.5 bits (153), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 38/117 (32%), Positives = 63/117 (53%), Gaps = 11/117 (9%)
Query: 117 ECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCTS 176
E + +G +A +V E A L +PG+ E+ +++ +MI++ G P+ FP V S
Sbjct: 4 EKLMKAGEIAKKVREKAIKLARPGMLLLELAESIEKMIMELGGKPA------FP--VNLS 55
Query: 177 VNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNLVK 230
+NE H P D+ L++GD + IDV V+++G+ DT+ T G +DE K
Sbjct: 56 INEIAAHYTPYKGDTTVLKEGDYLKIDVGVHIDGFIADTAVTVRVGMEEDELMEAAK 112
>pdb|3Q6D|A Chain A, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|B Chain B, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|C Chain C, Xaa-Pro Dipeptidase From Bacillus Anthracis.
pdb|3Q6D|D Chain D, Xaa-Pro Dipeptidase From Bacillus Anthracis
Length = 356
Score = 48.5 bits (114), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/113 (21%), Positives = 52/113 (46%), Gaps = 5/113 (4%)
Query: 116 IECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGFPKSVCT 175
I+ ++ + ++A E+ + ++PG++ E+ + + GA S F V +
Sbjct: 136 IKILKEAAQIADAAFEHILSFIRPGVSEIEVSNELEFFMRKQGATSSS-----FDIIVAS 190
Query: 176 SVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
+ + HG+ + +E GD + +D Y GY D + T G+ D+ + +
Sbjct: 191 GLRSALPHGVASEKVIETGDFVTLDFGAYYKGYCSDITRTIAVGEPSDKLKEI 243
>pdb|2V3Z|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 20/181 (11%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F 216
F
Sbjct: 276 F 276
>pdb|1WL9|A Chain A, Structure Of Aminopeptidase P From E. Coli
pdb|1W2M|A Chain A, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|B Chain B, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|C Chain C, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|D Chain D, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|E Chain E, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W2M|F Chain F, Ca-Substituted Form Of E. Coli Aminopeptidase P
pdb|1W7V|A Chain A, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|B Chain B, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|C Chain C, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1W7V|D Chain D, Znmg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|A Chain A, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|B Chain B, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|C Chain C, Zn Mg Substituted Aminopeptidase P From E. Coli
pdb|1WBQ|D Chain D, Zn Mg Substituted Aminopeptidase P From E. Coli
Length = 440
Score = 45.4 bits (106), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 20/181 (11%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F 216
F
Sbjct: 276 F 276
>pdb|2BWV|A Chain A, His361ala Escherichia Coli Aminopeptidase P
pdb|2V3Y|A Chain A, His361ala Escherichia Coli Aminopeptidase P In Complex
With Product
Length = 440
Score = 45.1 bits (105), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 20/181 (11%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENEXEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F 216
F
Sbjct: 276 F 276
>pdb|2BWY|A Chain A, Glu383ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 44.3 bits (103), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 20/181 (11%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F 216
F
Sbjct: 276 F 276
>pdb|2BWW|A Chain A, His350ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 20/181 (11%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F 216
F
Sbjct: 276 F 276
>pdb|1M35|A Chain A, Aminopeptidase P From Escherichia Coli
pdb|1M35|B Chain B, Aminopeptidase P From Escherichia Coli
pdb|1M35|C Chain C, Aminopeptidase P From Escherichia Coli
pdb|1M35|D Chain D, Aminopeptidase P From Escherichia Coli
pdb|1M35|E Chain E, Aminopeptidase P From Escherichia Coli
pdb|1M35|F Chain F, Aminopeptidase P From Escherichia Coli
pdb|1N51|A Chain A, Aminopeptidase P In Complex With The Inhibitor Apstatin
pdb|1WL6|A Chain A, Mg-Substituted Form Of E. Coli Aminopeptidase P
pdb|1WLR|A Chain A, Apo Aminopeptidase P From E. Coli
pdb|2BHA|A Chain A, E. Coli Aminopeptidase P In Complex With Substrate
pdb|2BHB|A Chain A, Zn Substituted E. Coli Aminopeptidase P
pdb|2BHC|A Chain A, Na Substituted E. Coli Aminopeptidase P
pdb|2BHD|A Chain A, Mg Substituted E. Coli Aminopeptidase P In Complex With
Product
pdb|1A16|A Chain A, Aminopeptidase P From E. Coli With The Inhibitor Pro-Leu
pdb|2BH3|A Chain A, Zn Substituted E.Coli Aminopeptidase P In Complex With
Product
pdb|2BN7|A Chain A, Mn Substituted E. Coli Aminopeptidase P In Complex With
Product And Zn
Length = 440
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 20/181 (11%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F 216
F
Sbjct: 276 F 276
>pdb|1JAW|A Chain A, Aminopeptidase P From E. Coli Low Ph Form
Length = 440
Score = 43.9 bits (102), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 44/181 (24%), Positives = 75/181 (41%), Gaps = 20/181 (11%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F 216
F
Sbjct: 276 F 276
>pdb|2BWS|A Chain A, His243ala Escherichia Coli Aminopeptidase P
pdb|2V3X|A Chain A, His243ala Escherichia Coli Aminopeptidase P In Complex
With Substrate
Length = 440
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 20/181 (11%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI + + DGD + ID GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILAYTENEXEMRDGDLVLIDAGCEYKGYAGDITRT 275
Query: 216 F 216
F
Sbjct: 276 F 276
>pdb|2V6C|A Chain A, Crystal Structure Of Erbb3 Binding Protein 1 (Ebp1)
Length = 353
Score = 41.6 bits (96), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 32/56 (57%), Gaps = 6/56 (10%)
Query: 168 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATFFCG 219
FP S+ SVN C+CH P L++GD + ID+ V+++G+ + + TF G
Sbjct: 68 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTFVIG 121
>pdb|2BWT|A Chain A, Asp260ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 20/181 (11%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + I GY GD + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIAAGCEYKGYAGDITRT 275
Query: 216 F 216
F
Sbjct: 276 F 276
>pdb|2BWU|A Chain A, Asp271ala Escherichia Coli Aminopeptidase P
Length = 440
Score = 41.2 bits (95), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 43/181 (23%), Positives = 74/181 (40%), Gaps = 20/181 (11%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSAT 215
+GA YPS + V + N CI H + + DGD + ID GY G + T
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECEMRDGDLVLIDAGCEYKGYAGAITRT 275
Query: 216 F 216
F
Sbjct: 276 F 276
>pdb|2BWX|A Chain A, His354ala Escherichia Coli Aminopeptidase P
Length = 441
Score = 40.8 bits (94), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 44/182 (24%), Positives = 75/182 (41%), Gaps = 21/182 (11%)
Query: 41 NQVSMQLSRTFSGLADLLFNRRN----LDAEPNRRRKRLRPGKVSPHRPVPDHIPRPPYV 96
++++ QL + +GL D++++ + D N ++LR G I P V
Sbjct: 111 SEINQQLYQLLNGL-DVVYHAQGEYAYADVIVNSALEKLRKGSRQNLTAPATMIDWRPVV 169
Query: 97 NSQKPIGIVSGPEVHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIID 156
+ + + PE I +R +G + A A +PG+ ++ +H
Sbjct: 170 HEMR---LFKSPE-----EIAVLRRAGEITAMAHTRAMEKCRPGMFEYHLEGEIHHEFNR 221
Query: 157 NGA-YPSPLGYGGFPKSVCTSVNECICHGIPDS-RALEDGDTINIDVTVYLNGYHGDTSA 214
+GA YPS + V + N CI H + + DGD + ID GY GD +
Sbjct: 222 HGARYPS------YNTIVGSGENGCILHYTENECXEMRDGDLVLIDAGCEYKGYAGDITR 275
Query: 215 TF 216
TF
Sbjct: 276 TF 277
>pdb|3J2I|A Chain A, Structure Of Late Pre-60s Ribosomal Subunits With Nuclear
Export Factor Arx1 Bound At The Peptide Exit Tunnel
Length = 394
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 168 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATF 216
FP S+ SVN C+CH P L++GD + ID+ V+++G+ + + TF
Sbjct: 75 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTF 125
>pdb|2Q8K|A Chain A, The Crystal Structure Of Ebp1
Length = 401
Score = 39.7 bits (91), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 6/53 (11%)
Query: 168 GFPKSVCTSVNECICHGIP----DSRALEDGDTINIDVTVYLNGYHGDTSATF 216
FP S+ SVN C+CH P L++GD + ID+ V+++G+ + + TF
Sbjct: 82 AFPTSI--SVNNCVCHFSPLKSDQDYILKEGDLVKIDLGVHVDGFIANVAHTF 132
>pdb|1WN1|A Chain A, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|1WN1|B Chain B, Crystal Structure Of Dipeptiase From Pyrococcus Horikoshii
Ot3
pdb|2HOW|A Chain A, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
pdb|2HOW|B Chain B, Dipeptidase (Ph0974) From Pyrococcus Horikoshii Ot3
Length = 356
Score = 35.8 bits (81), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 27/116 (23%), Positives = 49/116 (42%), Gaps = 10/116 (8%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMI--IDNGAYPSPLGYG 167
+ D++ ++ M + R+A +V E T G+ E+ + +I + +G P+
Sbjct: 131 IKDKEEVKMMEHASRIADKVFEEILTWDLIGMKERELALKIELLIRELSDGIAFEPI--- 187
Query: 168 GFPKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDD 223
V + N H P R + GD I +D GY D + T G++D+
Sbjct: 188 -----VASGENAANPHHEPGERKIRKGDIIILDYGARWKGYCSDITRTIGLGELDE 238
>pdb|1PV9|A Chain A, Prolidase From Pyrococcus Furiosus
pdb|1PV9|B Chain B, Prolidase From Pyrococcus Furiosus
Length = 348
Score = 34.7 bits (78), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 25/119 (21%), Positives = 51/119 (42%), Gaps = 5/119 (4%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ ++ IE + + +A + + A + G E+ V ++ NGA P F
Sbjct: 124 IKTKEEIEIIEKACEIADKAVMAAIEEITEGKREREVAAKVEYLMKMNGA-EKP----AF 178
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
+ + + HG+ + +E GD + ID+ N Y+ D + T G +++ R +
Sbjct: 179 DTIIASGHRSALPHGVASDKRIERGDLVVIDLGALYNHYNSDITRTIVVGSPNEKQREI 237
>pdb|1WY2|A Chain A, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
pdb|1WY2|B Chain B, Crystal Structure Of The Prolidase From Pyrococcus
Horikoshii Ot3
Length = 351
Score = 34.7 bits (78), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/119 (20%), Positives = 50/119 (42%), Gaps = 5/119 (4%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
+ EK I+ + + +A + + A + G E+ V ++ NGA P F
Sbjct: 127 IKSEKEIKIIEKACEIADKAVMAAIEEITEGKKEREVAAKVEYLMKMNGA-EKP----AF 181
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
+ + + HG+ + +E GD + ID+ Y+ D + T G +++ + +
Sbjct: 182 DTIIASGYRSALPHGVASDKRIERGDLVVIDLGALYQHYNSDITRTIVVGSPNEKQKEI 240
>pdb|1B59|A Chain A, Complex Of Human Methionine Aminopeptidase-2 Complexed
With Ovalicin
Length = 370
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 173
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 61 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 115
Query: 174 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSAT 215
S+N C H P D+ L+ D ID +++G D + T
Sbjct: 116 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFT 158
>pdb|1R58|A Chain A, Crystal Structure Of Metap2 Complexed With A357300
pdb|1R5G|A Chain A, Crystal Structure Of Metap2 Complexed With A311263
pdb|1R5H|A Chain A, Crystal Structure Of Metap2 Complexed With A320282
pdb|2ADU|A Chain A, Human Methionine Aminopeptidase Complex With 4-Aryl-1,2,3-
Triazole Inhibitor
pdb|1YW7|A Chain A, H-Metap2 Complexed With A444148
pdb|1YW8|A Chain A, H-Metap2 Complexed With A751277
pdb|1YW9|A Chain A, H-Metap2 Complexed With A849519
pdb|2GA2|A Chain A, H-Metap2 Complexed With A193400
pdb|2OAZ|A Chain A, Human Methionine Aminopeptidase-2 Complexed With Sb-587094
pdb|2EA2|A Chain A, H-Metap2 Complexed With A773812
pdb|2EA4|A Chain A, H-Metap2 Complexed With A797859
Length = 369
Score = 33.1 bits (74), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 30/105 (28%), Positives = 46/105 (43%), Gaps = 15/105 (14%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 173
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 60 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 114
Query: 174 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNGYHGDTSAT 215
S+N C H P D+ L+ D ID +++G D + T
Sbjct: 115 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISGRIIDCAFT 157
>pdb|1B6A|A Chain A, Human Methionine Aminopeptidase 2 Complexed With Tnp-470
Length = 478
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 173
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 169 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 223
Query: 174 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNG 207
S+N C H P D+ L+ D ID +++G
Sbjct: 224 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISG 258
>pdb|1QZY|A Chain A, Human Methionine Aminopeptidase In Complex With Bengamide
Inhibitor Laf153 And Cobalt
pdb|1KQ0|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With D-
Methionine
pdb|1KQ9|A Chain A, Human Methionine Aminopeptidase Type Ii In Complex With L-
Methionine
pdb|1BN5|A Chain A, Human Methionine Aminopeptidase 2
pdb|1BOA|A Chain A, Human Methionine Aminopeptidase 2 Complexed With
Angiogenesis Inhibitor Fumagillin
Length = 478
Score = 32.7 bits (73), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 28/97 (28%), Positives = 43/97 (44%), Gaps = 15/97 (15%)
Query: 119 MRVSGRLAAQVLEYAGTLVKPGITTDEI----DKAVHQMIIDNGAYPSPLGYG-GFPKSV 173
R + QV +Y + +KPG+T EI + ++I +NG L G FP
Sbjct: 169 FREAAEAHRQVRKYVMSWIKPGMTMIEICEKLEDCSRKLIKENG-----LNAGLAFPTGC 223
Query: 174 CTSVNECICHGIP---DSRALEDGDTINIDVTVYLNG 207
S+N C H P D+ L+ D ID +++G
Sbjct: 224 --SLNNCAAHYTPNAGDTTVLQYDDICKIDFGTHISG 258
>pdb|2ZSG|A Chain A, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
pdb|2ZSG|B Chain B, Crystal Structure Of X-Pro Aminopeptidase From Thermotoga
Maritima Msb8
Length = 359
Score = 32.3 bits (72), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 26/119 (21%), Positives = 45/119 (37%), Gaps = 5/119 (4%)
Query: 110 VHDEKGIECMRVSGRLAAQVLEYAGTLVKPGITTDEIDKAVHQMIIDNGAYPSPLGYGGF 169
V DE IE ++ + ++ + ++ G+T EI + + GA F
Sbjct: 133 VKDEGEIEKIKQAIEISERAFLETVQQIRAGMTEKEIAALLEYTMRKEGAEGV-----AF 187
Query: 170 PKSVCTSVNECICHGIPDSRALEDGDTINIDVTVYLNGYHGDTSATFFCGDVDDEARNL 228
V + + HG + +E GD I ID Y D + G+ DE + +
Sbjct: 188 DTIVASGCRSALPHGKASDKVVERGDVIVIDFGATYENYCADITRVVSIGEPSDEVKEV 246
>pdb|3QB0|A Chain A, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|B Chain B, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|C Chain C, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
pdb|3QB0|D Chain D, Crystal Structure Of Actin-Related Protein Arp4 From S.
Cerevisiae Complexed With Atp
Length = 498
Score = 28.1 bits (61), Expect = 4.0, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
Query: 150 VHQMIIDNGAYPSPLGYGG--FPKSVCTSV 177
V ++ID G+Y + +GY G FP+S+ SV
Sbjct: 23 VSAVVIDPGSYTTNIGYSGSDFPQSILPSV 52
>pdb|4EGE|A Chain A, Crystal Structure Of Dipeptidase Pepe From Mycobacterium
Ulcerans
Length = 378
Score = 28.1 bits (61), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 15/39 (38%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 183 HGIPDSRALEDGDTINIDVT-VYLNGYHGDTSATFFCGD 220
HG D R L+ GD + +D+ Y GY+ D++ T+ GD
Sbjct: 218 HGYSD-RKLQVGDIVVVDIGGTYEPGYYSDSTRTYSIGD 255
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 27.7 bits (60), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 204 YLNGYHGDTSATFFCGDVDDEARNLVKG 231
+ NGYHGDT D D+ +L KG
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKG 167
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 204 YLNGYHGDTSATFFCGDVDDEARNLVKG 231
+ NGYHGDT D D+ +L KG
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKG 167
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 204 YLNGYHGDTSATFFCGDVDDEARNLVKG 231
+ NGYHGDT D D+ +L KG
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKG 167
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 27.7 bits (60), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 204 YLNGYHGDTSATFFCGDVDDEARNLVKG 231
+ NGYHGDT D D+ +L KG
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKG 167
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 27.7 bits (60), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 204 YLNGYHGDTSATFFCGDVDDEARNLVKG 231
+ NGYHGDT D D+ +L KG
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKG 167
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 27.3 bits (59), Expect = 6.7, Method: Compositional matrix adjust.
Identities = 12/28 (42%), Positives = 15/28 (53%)
Query: 204 YLNGYHGDTSATFFCGDVDDEARNLVKG 231
+ NGYHGDT D D+ +L KG
Sbjct: 140 FRNGYHGDTFGAMSVCDPDNSMHSLWKG 167
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.139 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,467,218
Number of Sequences: 62578
Number of extensions: 312360
Number of successful extensions: 746
Number of sequences better than 100.0: 60
Number of HSP's better than 100.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 641
Number of HSP's gapped (non-prelim): 76
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)