BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026900
(231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O23403|PPD1_ARATH PsbP domain-containing protein 1, chloroplastic OS=Arabidopsis
thaliana GN=PPD1 PE=1 SV=1
Length = 287
Score = 195 bits (496), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 108/157 (68%), Positives = 123/157 (78%), Gaps = 4/157 (2%)
Query: 66 AVPRRNAM--ALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGA 123
AV RR +M L++S I S TA A V FREYIDTFDGYSFKYPQNWIQVRGA
Sbjct: 76 AVGRRKSMMMGLLMSGLIVSQANL-PTAFASTPV-FREYIDTFDGYSFKYPQNWIQVRGA 133
Query: 124 GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVR 183
GADIF+RDP VLDEN+SVE SSPSSS Y S+EDLG P+E G++VLRQYLTEFMSTRLGV+
Sbjct: 134 GADIFFRDPVVLDENLSVEFSSPSSSNYTSLEDLGSPEEVGKRVLRQYLTEFMSTRLGVK 193
Query: 184 RESNILSTSSRVADDGRLYYLVEVSCVWCWNITQLLV 220
R++NILSTSSRVADDG+LYY VEV+ N +L V
Sbjct: 194 RQANILSTSSRVADDGKLYYQVEVNIKSYANNNELAV 230
>sp|Q9SA52|CP41B_ARATH Chloroplast stem-loop binding protein of 41 kDa b, chloroplastic
OS=Arabidopsis thaliana GN=CSP41B PE=1 SV=1
Length = 378
Score = 52.4 bits (124), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/65 (52%), Positives = 49/65 (75%), Gaps = 1/65 (1%)
Query: 1 MARMVMMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPVM 60
MA+M+M+Q Q P FS+LTS+LS FNGA LH QV+ +++ P+ AL+V+AS+EKK +M
Sbjct: 1 MAKMMMLQ-QHQPSFSLLTSSLSDFNGAKLHLQVQYKRKVHQPKGALYVSASSEKKILIM 59
Query: 61 AATQF 65
T+F
Sbjct: 60 GGTRF 64
>sp|P82538|PPL1_ARATH PsbP-like protein 1, chloroplastic OS=Arabidopsis thaliana GN=PPL1
PE=1 SV=1
Length = 230
Score = 49.3 bits (116), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 34/117 (29%), Positives = 54/117 (46%), Gaps = 11/117 (9%)
Query: 93 AQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYK 152
A+ GF D D Y+F YP W +V G D Y+D E+VSV L P+S +
Sbjct: 75 AESKKGFLAVSDNKDAYAFLYPFGWQEVVIEGQDKVYKDVIEPLESVSVNL-VPTSKQ-- 131
Query: 153 SVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSC 209
++++ GPPK+ ++++ L + L +S DG+ YY E +
Sbjct: 132 TIKEFGPPKQIAETLIKKVLAP--------PNQKTTLIDASEHDVDGKTYYQFEFTV 180
>sp|P82796|TL22_SPIOL Thylakoid lumenal 22 kDa protein (Fragment) OS=Spinacia oleracea
PE=1 SV=1
Length = 20
Score = 36.6 bits (83), Expect = 0.16, Method: Composition-based stats.
Identities = 15/20 (75%), Positives = 16/20 (80%)
Query: 94 QQSVGFREYIDTFDGYSFKY 113
+QS GFREYID FDGYS Y
Sbjct: 1 EQSAGFREYIDFFDGYSLTY 20
>sp|O80634|PPL2_ARATH PsbP-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=PPL2
PE=1 SV=2
Length = 238
Score = 35.8 bits (81), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 25/108 (23%), Positives = 47/108 (43%), Gaps = 11/108 (10%)
Query: 99 FREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLG 158
+ ++D DGYS+ YP +W + D ++D Y+ +NV V + + ++G
Sbjct: 88 YSPFVDREDGYSYYYPSDWREFDFRAHDSAFKDRYLQLQNVRVRFIPTEKN---DIHEVG 144
Query: 159 PPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVE 206
P +E +++ + + I RV +DG+ YY E
Sbjct: 145 PMEEVVYDLVKHKFA-------APNQVATIYDMKERV-EDGKNYYTFE 184
>sp|Q8VY52|PPD2_ARATH PsbP domain-containing protein 2, chloroplastic OS=Arabidopsis
thaliana GN=PPD2 PE=1 SV=1
Length = 232
Score = 35.4 bits (80), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 27/130 (20%), Positives = 58/130 (44%), Gaps = 11/130 (8%)
Query: 73 MALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDP 132
+ L + + F+ F N A + + + + Y D+ +G++ P ++ +V AGA+ + +
Sbjct: 51 LNLSILTLFFNGFLLDNKAKSMEEL--QRYTDSNNGFTLLIPSSYTKVEKAGANALFEEL 108
Query: 133 YVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTS 192
N+ V + S R KS++ G P+ K++ R +E+ ++S
Sbjct: 109 NNGSNNIGVVV---SPVRIKSLDQFGSPQFVADKLIN------AEKRKESTKEAEVVSVG 159
Query: 193 SRVADDGRLY 202
R ++Y
Sbjct: 160 ERAGLGQQVY 169
>sp|Q59S63|PUS1_CANAL tRNA pseudouridine synthase 1 OS=Candida albicans (strain SC5314 /
ATCC MYA-2876) GN=PUS1 PE=3 SV=1
Length = 450
Score = 33.5 bits (75), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/73 (20%), Positives = 34/73 (46%)
Query: 57 NPVMAATQFAVPRRNAMALILSSYIFSDFGFRNTALAQQSVGFREYIDTFDGYSFKYPQN 116
N +T+ +P+ A+ L+L + +F + + T + + F ++ + + KY +
Sbjct: 309 NNFFQSTKINIPKAPALGLLLENPVFDGYNIKLTKSDYEPIDFTKFDKEMNEFKMKYIYD 368
Query: 117 WIQVRGAGADIFY 129
I + +IFY
Sbjct: 369 KIYAEESKENIFY 381
>sp|Q08225|DPP3_YEAST Probable dipeptidyl peptidase 3 OS=Saccharomyces cerevisiae (strain
ATCC 204508 / S288c) GN=YOL057W PE=1 SV=1
Length = 711
Score = 32.3 bits (72), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
Query: 2 ARMVMMQ--HQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTASNEKKNPV 59
+R+VM Q H++ P F ++ + S NG + Q+QQT L E + SN
Sbjct: 44 SRVVMRQVSHESEPIFDLILAIHSKLNGKYPEDDITQKQQTGLYLEYVSQFLSNLGNFKS 103
Query: 60 MAATQFAVPR 69
T+F +PR
Sbjct: 104 FGDTKF-IPR 112
>sp|Q7Z0T8|RL24_SCHJA 60S ribosomal protein L24 OS=Schistosoma japonicum GN=RPL24 PE=2
SV=1
Length = 156
Score = 31.6 bits (70), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 24/46 (52%)
Query: 6 MMQHQTHPCFSILTSTLSGFNGASLHSQVRQQQQTPLPREALHVTA 51
M + QT S+LT T G GASL + ++ Q P R+A+ A
Sbjct: 63 MSEEQTKNELSVLTKTARGIAGASLAEIMAKRNQKPEVRKAMRDQA 108
>sp|Q9S720|PPD3_ARATH PsbP domain-containing protein 3, chloroplastic OS=Arabidopsis
thaliana GN=PPD3 PE=1 SV=2
Length = 247
Score = 31.6 bits (70), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 1/68 (1%)
Query: 51 ASNEKKNPVMAATQFAVPRRNAMALILSSYIFSDFGFRNT-ALAQQSVGFREYIDTFDGY 109
+SNE+++ + + + RR+ M I SS F A S FR Y D + +
Sbjct: 39 SSNEEQHRISSRDHVGMKRRDVMLQIASSVFFLPLAISPAFAETNASEAFRVYTDETNKF 98
Query: 110 SFKYPQNW 117
PQ+W
Sbjct: 99 EISIPQDW 106
>sp|Q0W4I8|GLMM_UNCMA Probable phosphoglucosamine mutase OS=Uncultured methanogenic
archaeon RC-I GN=glmM PE=3 SV=1
Length = 438
Score = 31.6 bits (70), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 28/55 (50%), Gaps = 1/55 (1%)
Query: 103 IDTFDGYSFKYPQNWIQVRGAGADIFYR-DPYVLDENVSVELSSPSSSRYKSVED 156
I+T DG +YP+ W+ +R +G + R +DE + +L S + S K D
Sbjct: 380 INTLDGVRVEYPEGWVLIRPSGTEPKIRITAEAVDEGAAEKLYSQAESIVKRCID 434
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.322 0.133 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 77,309,729
Number of Sequences: 539616
Number of extensions: 2983029
Number of successful extensions: 6982
Number of sequences better than 100.0: 13
Number of HSP's better than 100.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 6974
Number of HSP's gapped (non-prelim): 13
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)