Query 026900
Match_columns 231
No_of_seqs 168 out of 234
Neff 5.3
Searched_HMMs 29240
Date Tue Mar 26 01:01:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026900.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026900hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1v2b_A 23-kDa polypeptide of p 100.0 1.2E-29 4E-34 214.4 6.8 119 94-220 4-139 (177)
2 2xb3_A PSBP protein; photosynt 100.0 2E-28 6.8E-33 202.5 11.9 111 95-213 4-115 (165)
3 2lnj_A SLL1418 protein, putati 99.9 2.4E-30 8.3E-35 216.0 0.0 119 94-220 9-133 (170)
4 3hlz_A Uncharacterized protein 77.4 2.6 8.8E-05 37.0 4.6 43 100-142 5-47 (269)
5 1tu1_A Hypothetical protein PA 45.6 1E+02 0.0035 23.8 10.5 98 99-212 3-110 (148)
6 3lyd_A Uncharacterized protein 37.0 1.6E+02 0.0056 23.7 9.5 85 107-210 18-105 (161)
7 2ch9_A Cystatin F; inhibitor, 27.5 1.9E+02 0.0065 21.9 6.8 27 184-212 52-78 (131)
8 1yvb_I Cystatin; cysteine prot 25.9 1.8E+02 0.0063 20.8 6.3 28 184-213 38-65 (111)
9 4exr_A Putative lipoprotein; Y 23.9 1.1E+02 0.0037 24.7 5.0 39 156-208 112-150 (174)
10 2q7a_A Cell surface heme-bindi 22.4 91 0.0031 25.3 4.1 52 151-217 20-73 (152)
11 3ujm_A Rasputin; NTF2-like fol 21.9 23 0.00079 26.7 0.5 18 158-175 1-18 (120)
No 1
>1v2b_A 23-kDa polypeptide of photosystem II oxygen- evolving complex; alpha-beta, riken structural genomics/proteomics initiative, RSGI; HET: GLC; 1.60A {Nicotiana tabacum} SCOP: d.107.1.2
Probab=99.96 E-value=1.2e-29 Score=214.37 Aligned_cols=119 Identities=24% Similarity=0.377 Sum_probs=92.6
Q ss_pred ccccCcccceecCCceeeecCCCceeec---cccccEEeeCCCCCccceEEEEeCCCCcCCCCcccCCChHH----HHHH
Q 026900 94 QQSVGFREYIDTFDGYSFKYPQNWIQVR---GAGADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKE----AGRK 166 (231)
Q Consensus 94 e~~~gf~~y~D~~dGYsf~yP~~W~~v~---~~G~dv~f~D~~~~~eNVsV~Vsp~~~~~~~si~dlGsPee----V~~~ 166 (231)
.+++||++|. +|||+|+||.+|+++. ++|+|++|+|+++..+||+|+|+|++ +++|+|||+|++ |+++
T Consensus 4 ~~~~g~~~y~--~~gysf~yP~~W~~~~~~~~~G~~~~f~d~~~~~~nvsV~v~p~~---~~si~dlGspe~~~~~v~~~ 78 (177)
T 1v2b_A 4 KTDTDFQTYN--GDGFKLQIPSKWNPNKEVEYPGQVLRFEDNFDATSNVIVAITPTD---KKSITDFGSPEQFLSQVDYL 78 (177)
T ss_dssp ---CCEEEEE--CSSEEEEEETTCEECCCCCSTTEEEEEEETTEEEEEEEEEEEECS---CSSGGGGCSHHHHHHHTGGG
T ss_pred CCCCCceEEe--cCCEEEEcCCCCcccccccCCCceEEEeCCcCCCccEEEEEeCCC---CCChhHCCCHHHHHHHHHHH
Confidence 3468999998 9999999999999644 66999999999999999999999996 699999999999 6889
Q ss_pred HHHHHhhhccccc------cCCcceeeEEecceeecCCCeeEEEEEEEEEecc----cCcceee
Q 026900 167 VLRQYLTEFMSTR------LGVRRESNILSTSSRVADDGRLYYLVEVSCVWCW----NITQLLV 220 (231)
Q Consensus 167 L~k~~~~~~~st~------~~~~~~a~ll~a~~r~~~~G~~YY~~Ey~v~s~a----~~n~l~~ 220 (231)
|+++++++ .+. ++++++++||++++|+ .||++||+|||.+++.. .||.|+.
T Consensus 79 l~~~~~~~--~~~~~~gf~~~~~~~a~ll~a~~r~-~~G~~YY~~E~~~~~~~g~e~~rH~l~~ 139 (177)
T 1v2b_A 79 LGRQAYSG--KTDSEGGFESDAVAIANVLETSTAE-VGGKQYYYLSILTRTADGNEGGKHQLVT 139 (177)
T ss_dssp C--------------------CCCEEEEEEEEEEE-ETTEEEEEEEEEEEC-----CCEEEEEE
T ss_pred HHHHhhcc--cccccCCcccCcccceEEEEeEEEE-eCCeEEEEEEEEEecCCCCccccEEEEE
Confidence 99999886 222 3455999999999999 79999999999999764 5666654
No 2
>2xb3_A PSBP protein; photosynthesis, zinc-binding, photosystem; 2.80A {Thermosynechococcus elongatus}
Probab=99.95 E-value=2e-28 Score=202.49 Aligned_cols=111 Identities=33% Similarity=0.656 Sum_probs=101.7
Q ss_pred cccCcccceecCCceeeecCCCceeeccc-cccEEeeCCCCCccceEEEEeCCCCcCCCCcccCCChHHHHHHHHHHHhh
Q 026900 95 QSVGFREYIDTFDGYSFKYPQNWIQVRGA-GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLT 173 (231)
Q Consensus 95 ~~~gf~~y~D~~dGYsf~yP~~W~~v~~~-G~dv~f~D~~~~~eNVsV~Vsp~~~~~~~si~dlGsPeeV~~~L~k~~~~ 173 (231)
.+.||++|.|+++||+|+||.+|+++.++ |++++|+|+++..+||+|+|+|+.. .++|+|||+||+|+++|++++++
T Consensus 4 ~~~g~~~~~D~~~gysf~~P~~W~~~~~~~g~~v~f~d~~~~~~~v~V~v~p~~~--~~~l~~~G~~e~va~~l~~~~~~ 81 (165)
T 2xb3_A 4 ATSGLQAYVDSYDGYEFLYPRGWVQVQVEDPVDVVFHDIIETTENVSVVVNTVAS--TKSLEELGSPEEVGDRLLRNIIA 81 (165)
T ss_dssp --CCEEEEEETTTTEEEEEETTEEEECCCTTEEEEEEESSCTTSEEEEEEEECSS--CCCSGGGCCHHHHHHHHHHHTTS
T ss_pred CCCCceEEEcCCCCEEEEcCCCCeEecCCCCceEEEECcccCCceEEEEEecCCC--CCChHHcCCHHHHHHHHHHHhhc
Confidence 36799999999999999999999999998 9999999999999999999999973 69999999999999999999887
Q ss_pred hccccccCCcceeeEEecceeecCCCeeEEEEEEEEEecc
Q 026900 174 EFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCW 213 (231)
Q Consensus 174 ~~~st~~~~~~~a~ll~a~~r~~~~G~~YY~~Ey~v~s~a 213 (231)
+ ++++++++||++.+|+ .+|++||+|||.+++..
T Consensus 82 ~-----~~~~~~~~l~~a~~r~-~~G~~yY~~Ey~~~~~~ 115 (165)
T 2xb3_A 82 P-----SESGRSSALIAATSQK-ADDKTYYILEYAVTLPG 115 (165)
T ss_dssp C-----TTSSCEEEEEEEEEEE-ETTEEEEEEEEEEECC-
T ss_pred C-----CCCCcceEEEEeeeee-cCCceEEEEEEEEecCC
Confidence 6 4678999999999997 89999999999998865
No 3
>2lnj_A SLL1418 protein, putative uncharacterized protein SLL1418; cyanop, photosystem II, PSBP, photosynthesis; NMR {Synechocystis SP}
Probab=99.92 E-value=2.4e-30 Score=215.98 Aligned_cols=119 Identities=30% Similarity=0.521 Sum_probs=107.7
Q ss_pred ccccCcccceecCCceeeecCCCceeeccc----cccEEeeCCCCCccceEEEEeCCCCcCCCCcccCCChHHHHHHHHH
Q 026900 94 QQSVGFREYIDTFDGYSFKYPQNWIQVRGA----GADIFYRDPYVLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLR 169 (231)
Q Consensus 94 e~~~gf~~y~D~~dGYsf~yP~~W~~v~~~----G~dv~f~D~~~~~eNVsV~Vsp~~~~~~~si~dlGsPeeV~~~L~k 169 (231)
+.+.||++|.|+.|||+|+||++|++++++ |+|++|+|+++..+||+|+|+|++. .++|+|||+||+|+++|++
T Consensus 9 ~~~~g~~~y~d~~~gy~f~~P~gW~~~~~~~~~~g~~v~f~d~~~~~~nvsV~v~p~~~--~~si~d~G~pe~va~~l~~ 86 (170)
T 2lnj_A 9 VGIASLQRYSDTKDGYEFLYPNGWIGVDVKGASPGVDVVFRDLIERDENLSVIISEIPS--DKTLTDLGTATDVGYRFMK 86 (170)
Confidence 567899999999999999999999999988 9999999999999999999999972 5999999999999999999
Q ss_pred HHhhhccccccCCcceeeEEecceeecCCCeeEEEEEEEEEec--ccCcceee
Q 026900 170 QYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWC--WNITQLLV 220 (231)
Q Consensus 170 ~~~~~~~st~~~~~~~a~ll~a~~r~~~~G~~YY~~Ey~v~s~--a~~n~l~~ 220 (231)
+++++ ++++++++||++.+|+ .||++||+|||.+++. ..||.|++
T Consensus 87 ~~~~~-----~~~~~~a~li~a~~~~-~~G~~yY~~Ey~~~~~~~~~rh~l~~ 133 (170)
T 2lnj_A 87 TVNDA-----SQGDRQAELINAEARD-EDGQVYYTLEYRVLVGDNVERHDLAS 133 (170)
Confidence 99987 4778999999999998 8999999999999885 34555544
No 4
>3hlz_A Uncharacterized protein BT_1490; NP_810393.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE; 1.50A {Bacteroides thetaiotaomicron vpi-5482}
Probab=77.38 E-value=2.6 Score=36.97 Aligned_cols=43 Identities=19% Similarity=0.529 Sum_probs=33.1
Q ss_pred ccceecCCceeeecCCCceeeccccccEEeeCCCCCccceEEE
Q 026900 100 REYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLDENVSVE 142 (231)
Q Consensus 100 ~~y~D~~dGYsf~yP~~W~~v~~~G~dv~f~D~~~~~eNVsV~ 142 (231)
..|..|+-=|+..||++|+|.+-..--..|.+|..=+.|..+.
T Consensus 5 kk~ISPgaWfs~~yP~~W~EfEd~E~sflFynp~~WtGNfRIS 47 (269)
T 3hlz_A 5 KKFISPGAWFSMNYPSDWNEFEDGEGSFLFYNPDVWTGNFRIS 47 (269)
T ss_dssp EEEECGGGCEEEEECTTCEEECCCTTEEEEECSSSCCCEEEEE
T ss_pred ceeecCCceeEEecCCCcccccCCCCceeeeChhhcccceEEE
Confidence 3577788889999999999987554455677777888887643
No 5
>1tu1_A Hypothetical protein PA0094; structural genomics, PSI, PROT structure initiative, midwest center for structural genomic unknown function; 1.95A {Pseudomonas aeruginosa} SCOP: d.107.1.3
Probab=45.59 E-value=1e+02 Score=23.76 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=48.5
Q ss_pred cccceecCCceeeecCCCceeeccccccEEeeCCCCCc--cceEEEEeCCCCcCCCCcccCCChHHHHHHHHHHH---hh
Q 026900 99 FREYIDTFDGYSFKYPQNWIQVRGAGADIFYRDPYVLD--ENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQY---LT 173 (231)
Q Consensus 99 f~~y~D~~dGYsf~yP~~W~~v~~~G~dv~f~D~~~~~--eNVsV~Vsp~~~~~~~si~dlGsPeeV~~~L~k~~---~~ 173 (231)
+..|. .+.++|..|.+|.... ..|++-....+. -||.|...+... . .+.++..++-+++. +.
T Consensus 3 m~~y~--~~Egsl~lP~gw~D~t---~nv~~~~~~~~~g~~~lvIsR~~~~~--~------~~l~~~~~~q~~~l~~~l~ 69 (148)
T 1tu1_A 3 MTLYR--LHEADLEIPDAWQDQS---INIFKLPASGPAREASFVISRDASQG--D------APFADYVARQLENAEKQLP 69 (148)
T ss_dssp EEEEE--CSSEEEEEETTSEECC---BEEEEECCBTTBCCEEEEEEEECCCT--T------SCHHHHHHHHHHHHHHHST
T ss_pred CceEE--ECCEEEeCCCCcEeee---EEEEEcCCCCCCCceEEEEEeccCCC--C------CCHHHHHHHHHHHHHhhCc
Confidence 45675 8899999999999432 344443322212 355555555442 2 34444444333332 22
Q ss_pred hccc-----cccCCcceeeEEecceeecCCCeeEEEEEEEEEec
Q 026900 174 EFMS-----TRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWC 212 (231)
Q Consensus 174 ~~~s-----t~~~~~~~a~ll~a~~r~~~~G~~YY~~Ey~v~s~ 212 (231)
++.- +.. .+..+..++..=+ .+|.++|++...+...
T Consensus 70 ~y~~~~~~~~~l-~g~~a~~~e~~~~--~~g~~~~Q~q~~~~~~ 110 (148)
T 1tu1_A 70 GFKLHKRWDINI-HGHAAVLLDYQWQ--REGRDLMLRQVFIERR 110 (148)
T ss_dssp TCEEEEEEEEEE-TTEEEEEEEEEEE--ETTEEEEEEEEEECCS
T ss_pred CcEEeeeEeEEE-cCCcEEEEEEEEc--cCCEEEEEEEEEEEEC
Confidence 2100 111 1234444444333 3567777777665543
No 6
>3lyd_A Uncharacterized protein; PSI-2, MCSG, GEBA, genomic encyclopae bacteria and archaea, structural genomics, protein structur initiative; HET: MSE; 1.45A {Jonesia denitrificans}
Probab=37.01 E-value=1.6e+02 Score=23.67 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=49.2
Q ss_pred CceeeecCCCceeeccccccEEeeCCC---CCccceEEEEeCCCCcCCCCcccCCChHHHHHHHHHHHhhhccccccCCc
Q 026900 107 DGYSFKYPQNWIQVRGAGADIFYRDPY---VLDENVSVELSSPSSSRYKSVEDLGPPKEAGRKVLRQYLTEFMSTRLGVR 183 (231)
Q Consensus 107 dGYsf~yP~~W~~v~~~G~dv~f~D~~---~~~eNVsV~Vsp~~~~~~~si~dlGsPeeV~~~L~k~~~~~~~st~~~~~ 183 (231)
-++++-.|.||+.....|.-+...+.. .-.-|+-|++.-.+- ++ | |.+.+=+.+..+. -
T Consensus 18 p~~~v~~P~gWe~~~~~~~~~~~~~~~~~~~F~pN~vVtv~r~~~----~~--~----e~~r~el~~~~~~--------l 79 (161)
T 3lyd_A 18 TGFTVPIPETWQPDPTMGTQFAARPHTPPQGFTPNIIGTVRRAAT----GA--L----HNQRTELDQRATQ--------L 79 (161)
T ss_dssp CEEEEECCTTEEECTTSSSSEEEEESSCCSSSCCEEEEEEEEECT----TH--H----HHHHHHHHHHHTT--------S
T ss_pred ceeeccCCCCceEcCCCCceEEeccCCCCCCccccEEEEEEecCc----HH--H----HHHHHHHHHHHhh--------C
Confidence 469999999999998777644444322 356788888887651 11 1 2222223332221 1
Q ss_pred ceeeEEecceeecCCCeeEEEEEEEEE
Q 026900 184 RESNILSTSSRVADDGRLYYLVEVSCV 210 (231)
Q Consensus 184 ~~a~ll~a~~r~~~~G~~YY~~Ey~v~ 210 (231)
-.-++++-..-+ .+|.+-|.+||.=+
T Consensus 80 p~~~~~~r~~~~-~~G~pa~~iey~y~ 105 (161)
T 3lyd_A 80 PDYAERGRTETT-VDGFPAYHIEYAYR 105 (161)
T ss_dssp TTCEEEEEEEEE-ETTEEEEEEEEEEE
T ss_pred CCcEeecccccc-cCCcccEEEEEEEe
Confidence 123333333334 68888888888743
No 7
>2ch9_A Cystatin F; inhibitor, cysteine protease inhibitor, glycoprotein; HET: NAG FUL; 2.10A {Homo sapiens}
Probab=27.55 E-value=1.9e+02 Score=21.85 Aligned_cols=27 Identities=26% Similarity=0.327 Sum_probs=20.6
Q ss_pred ceeeEEecceeecCCCeeEEEEEEEEEec
Q 026900 184 RESNILSTSSRVADDGRLYYLVEVSCVWC 212 (231)
Q Consensus 184 ~~a~ll~a~~r~~~~G~~YY~~Ey~v~s~ 212 (231)
+-.+|+++.+.. +.|..| .+++.+..+
T Consensus 52 ~l~~V~~a~~QV-VaG~~Y-~l~v~v~~t 78 (131)
T 2ch9_A 52 KESRITRALVQI-VKGLKY-MLEVEIGRT 78 (131)
T ss_dssp EEEEEEEEEEEE-SSSEEE-EEEEEEEEE
T ss_pred EEEEEEEeeeEe-cCCeEE-EEEEEEEcc
Confidence 457889998877 788665 599998754
No 8
>1yvb_I Cystatin; cysteine protease-inhibitor complex, hydrolase-hydrolase INH complex; 2.70A {Gallus gallus} SCOP: d.17.1.2 PDB: 1a67_A 1cew_I 1a90_A
Probab=25.90 E-value=1.8e+02 Score=20.75 Aligned_cols=28 Identities=18% Similarity=0.257 Sum_probs=21.4
Q ss_pred ceeeEEecceeecCCCeeEEEEEEEEEecc
Q 026900 184 RESNILSTSSRVADDGRLYYLVEVSCVWCW 213 (231)
Q Consensus 184 ~~a~ll~a~~r~~~~G~~YY~~Ey~v~s~a 213 (231)
+-.+|+++.+.. +.|..| .+++.+..+.
T Consensus 38 ~l~~v~~a~~Qv-VaG~~y-~l~v~v~~t~ 65 (111)
T 1yvb_I 38 RVVRVISAKRQL-VSGIKY-ILQVEIGRTT 65 (111)
T ss_dssp EEEEECCCEEEE-SSSEEE-EEEEEEEEBS
T ss_pred EEEEEEEEEEEE-ECCeEE-EEEEEEEccc
Confidence 567888888777 788765 5999987663
No 9
>4exr_A Putative lipoprotein; YPEB domain dimer, structural genomics, joint center for STR genomics, JCSG, protein structure initiative; 1.85A {Clostridium difficile}
Probab=23.94 E-value=1.1e+02 Score=24.69 Aligned_cols=39 Identities=18% Similarity=0.234 Sum_probs=24.5
Q ss_pred cCCChHHHHHHHHHHHhhhccccccCCcceeeEEecceeecCCCeeEEEEEEE
Q 026900 156 DLGPPKEAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVS 208 (231)
Q Consensus 156 dlGsPeeV~~~L~k~~~~~~~st~~~~~~~a~ll~a~~r~~~~G~~YY~~Ey~ 208 (231)
..=+++++....++++ + | .+++..-.. .+|+.+|.+|+.
T Consensus 112 ~~is~~~A~~~Al~~~--~--------G---~v~e~eLd~-d~G~~vYevei~ 150 (174)
T 4exr_A 112 DIMTPQQAMEIALKEQ--N--------G---IVKEWSLDK-DLDVTFYKIRID 150 (174)
T ss_dssp TCCCHHHHHHHHHHHS--C--------S---EEEEEEEEE-ETTEEEEEEEEE
T ss_pred CCcCHHHHHHHHHHhC--C--------C---eEEEEEEEE-eCCEEEEEEEEE
Confidence 4456777766655544 2 2 355554444 589999998887
No 10
>2q7a_A Cell surface heme-binding protein; beta sandwich; HET: HEM; 2.10A {Streptococcus pyogenes}
Probab=22.36 E-value=91 Score=25.25 Aligned_cols=52 Identities=17% Similarity=0.218 Sum_probs=34.7
Q ss_pred CCCcccCCChH--HHHHHHHHHHhhhccccccCCcceeeEEecceeecCCCeeEEEEEEEEEecccCcc
Q 026900 151 YKSVEDLGPPK--EAGRKVLRQYLTEFMSTRLGVRRESNILSTSSRVADDGRLYYLVEVSCVWCWNITQ 217 (231)
Q Consensus 151 ~~si~dlGsPe--eV~~~L~k~~~~~~~st~~~~~~~a~ll~a~~r~~~~G~~YY~~Ey~v~s~a~~n~ 217 (231)
-..|+|-|.-+ ++|+-..+.+... ..||+. . .+|+.|.++++.+..+-.+..
T Consensus 20 Tg~ieD~G~~~~~aiGqgMve~~v~~-----------~~lLE~---~-d~Gk~YLTvr~~L~d~i~d~~ 73 (152)
T 2q7a_A 20 SGQIEDSGGEHSFDIGQGMVEGTVYS-----------DAMLEV---S-DAGKIVLTFRMSLADYSGNYQ 73 (152)
T ss_dssp TCCCCSTTCGGGHHHHHHHHHHHBCS-----------EEEEEE---E-TTSCEEEEEEESCGGGEEEEE
T ss_pred ccceecCCCcccchhhhhHHHhhhcc-----------ceeEEE---c-CCCcEEEEEEEEhhhhcCccE
Confidence 47899999733 6788777776643 345554 2 479999999987555444333
No 11
>3ujm_A Rasputin; NTF2-like fold, RAS signaling, signaling protein; HET: EPE; 2.74A {Drosophila melanogaster}
Probab=21.88 E-value=23 Score=26.75 Aligned_cols=18 Identities=39% Similarity=0.669 Sum_probs=13.7
Q ss_pred CChHHHHHHHHHHHhhhc
Q 026900 158 GPPKEAGRKVLRQYLTEF 175 (231)
Q Consensus 158 GsPeeV~~~L~k~~~~~~ 175 (231)
|+|++||+.+++++|.-.
T Consensus 1 ~s~~~vg~~Fv~~YY~~l 18 (120)
T 3ujm_A 1 GSHMSVGREFVRQYYTLL 18 (120)
T ss_dssp ---CCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHHH
Confidence 899999999999999864
Done!