Query 026901
Match_columns 231
No_of_seqs 219 out of 774
Neff 4.3
Searched_HMMs 29240
Date Tue Mar 26 01:03:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026901.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026901hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4g92_C HAPE; transcription fac 100.0 2.9E-35 9.9E-40 235.5 11.7 106 34-139 13-119 (119)
2 1n1j_B NF-YC; histone-like PAI 100.0 3.9E-30 1.3E-34 198.8 9.5 94 46-139 2-97 (97)
3 1jfi_A Transcription regulator 99.9 2.4E-27 8.2E-32 183.8 6.7 87 57-143 7-93 (98)
4 2byk_A Chrac-16; nucleosome sl 99.9 2.6E-27 8.7E-32 194.8 6.9 89 56-144 14-103 (140)
5 2byk_B Chrac-14; nucleosome sl 99.8 4.9E-21 1.7E-25 155.1 7.3 78 59-136 7-85 (128)
6 1n1j_A NF-YB; histone-like PAI 99.8 1.5E-20 5E-25 143.6 6.9 82 58-142 5-87 (93)
7 1b67_A Protein (histone HMFA); 99.6 6.8E-16 2.3E-20 111.1 8.0 65 61-126 2-66 (68)
8 3b0c_W CENP-W, centromere prot 99.6 9.7E-16 3.3E-20 113.3 8.2 66 60-126 3-69 (76)
9 1jfi_B DR1 protein, transcript 99.6 3E-15 1E-19 127.7 7.8 79 57-136 11-90 (179)
10 1id3_C Histone H2A.1; nucleoso 99.5 3.7E-14 1.3E-18 115.4 7.7 77 59-135 23-99 (131)
11 2nqb_C Histone H2A; nucleosome 99.5 5.3E-14 1.8E-18 113.3 7.5 77 59-135 21-97 (123)
12 1tzy_A Histone H2A-IV; histone 99.5 7.4E-14 2.5E-18 113.4 7.5 77 59-135 23-99 (129)
13 2f8n_G Core histone macro-H2A. 99.5 6.2E-14 2.1E-18 112.6 6.9 77 59-135 20-96 (120)
14 1f66_C Histone H2A.Z; nucleoso 99.5 1.1E-13 3.8E-18 112.2 7.3 77 59-135 25-102 (128)
15 2f8n_K Histone H2A type 1; nuc 99.4 1.7E-13 5.9E-18 113.8 7.4 77 59-135 42-118 (149)
16 1ku5_A HPHA, archaeal histon; 99.3 5E-12 1.7E-16 91.7 8.0 66 60-126 5-70 (70)
17 1f1e_A Histone fold protein; a 99.3 6.3E-12 2.2E-16 104.8 8.2 73 54-127 75-147 (154)
18 2jss_A Chimera of histone H2B. 99.3 4.4E-12 1.5E-16 108.3 7.1 77 59-135 103-180 (192)
19 3b0c_T CENP-T, centromere prot 99.2 3E-11 1E-15 95.6 7.1 77 58-135 4-80 (111)
20 1f1e_A Histone fold protein; a 99.1 7.7E-11 2.6E-15 98.3 8.0 66 60-126 3-69 (154)
21 1tzy_D Histone H4-VI; histone- 99.1 1.3E-10 4.3E-15 90.4 8.4 67 61-128 29-95 (103)
22 2yfw_B Histone H4, H4; cell cy 99.1 1.1E-10 3.9E-15 90.8 7.8 67 61-128 29-95 (103)
23 2hue_C Histone H4; mini beta s 99.1 3.7E-10 1.3E-14 84.9 8.3 68 59-127 8-75 (84)
24 1id3_B Histone H4; nucleosome 99.1 4.3E-10 1.5E-14 87.7 8.4 67 60-127 27-93 (102)
25 1taf_B TFIID TBP associated fa 98.7 3.5E-08 1.2E-12 72.6 8.4 66 59-125 4-69 (70)
26 1taf_A TFIID TBP associated fa 98.1 9.1E-06 3.1E-10 59.4 7.8 61 65-126 5-65 (68)
27 1tzy_C Histone H3; histone-fol 98.1 1.4E-05 4.9E-10 65.4 9.3 78 47-125 48-130 (136)
28 2hue_B Histone H3; mini beta s 98.1 1.2E-05 4E-10 60.2 7.7 49 78-126 24-72 (77)
29 4dra_A Centromere protein S; D 98.1 4.3E-06 1.5E-10 66.7 5.6 63 67-130 33-98 (113)
30 2yfv_A Histone H3-like centrom 98.0 1.3E-05 4.3E-10 62.6 7.2 78 48-125 14-98 (100)
31 3r45_A Histone H3-like centrom 98.0 9.3E-06 3.2E-10 67.9 6.8 78 48-125 64-147 (156)
32 3b0b_B CENP-S, centromere prot 98.0 7.2E-06 2.4E-10 64.7 5.5 64 67-130 25-90 (107)
33 3nqu_A Histone H3-like centrom 98.0 1.3E-05 4.4E-10 66.0 7.2 78 48-125 48-131 (140)
34 3nqj_A Histone H3-like centrom 98.0 2.2E-05 7.5E-10 59.3 7.6 64 62-125 4-73 (82)
35 2ly8_A Budding yeast chaperone 98.0 1.4E-05 4.7E-10 64.4 6.7 54 75-128 60-113 (121)
36 3v9r_A MHF1, uncharacterized p 97.9 2.6E-05 8.7E-10 59.8 6.2 52 79-130 32-83 (90)
37 2l5a_A Histone H3-like centrom 97.8 1.6E-05 5.4E-10 70.3 4.5 94 33-127 97-226 (235)
38 3ksy_A SOS-1, SON of sevenless 97.8 5.7E-05 1.9E-09 77.6 8.6 90 43-135 84-177 (1049)
39 3vh5_A CENP-S; histone fold, c 97.7 4.3E-05 1.5E-09 62.9 5.7 59 78-136 38-97 (140)
40 1bh9_B TAFII28; histone fold, 97.6 0.00016 5.6E-09 55.1 7.0 77 50-127 5-82 (89)
41 2nqb_D Histone H2B; nucleosome 97.4 0.00034 1.2E-08 56.5 7.1 60 65-125 37-97 (123)
42 4dra_E Centromere protein X; D 97.4 0.0008 2.7E-08 51.0 8.7 67 59-125 10-78 (84)
43 3b0b_C CENP-X, centromere prot 97.4 0.00071 2.4E-08 50.9 8.3 67 59-125 6-74 (81)
44 1tzy_B Histone H2B; histone-fo 97.4 0.00039 1.3E-08 56.4 7.2 59 66-125 41-100 (126)
45 2jss_A Chimera of histone H2B. 97.1 0.0011 3.7E-08 56.3 7.2 60 65-125 7-67 (192)
46 2l5a_A Histone H3-like centrom 96.5 0.0052 1.8E-07 54.3 6.8 70 59-128 12-85 (235)
47 1h3o_B Transcription initiatio 95.6 0.05 1.7E-06 40.4 7.7 67 60-127 4-71 (76)
48 3v9r_B MHF2, uncharacterized p 95.5 0.046 1.6E-06 41.8 7.1 63 62-124 2-73 (88)
49 2ly8_A Budding yeast chaperone 81.2 1.7 5.9E-05 34.7 4.4 75 60-139 3-87 (121)
50 3vlf_B 26S protease regulatory 78.8 1.1 3.9E-05 32.5 2.5 42 85-126 25-70 (88)
51 3kw6_A 26S protease regulatory 74.6 3.9 0.00013 28.5 4.2 42 85-126 27-72 (78)
52 2dzn_B 26S protease regulatory 69.6 6.2 0.00021 27.9 4.4 32 96-127 37-68 (82)
53 1wwi_A Hypothetical protein TT 67.6 8.5 0.00029 31.8 5.3 59 61-120 2-60 (148)
54 2krk_A 26S protease regulatory 67.0 6.9 0.00023 28.3 4.2 40 87-126 37-80 (86)
55 2v1u_A Cell division control p 66.4 18 0.00062 30.5 7.4 64 64-127 203-276 (387)
56 3uk6_A RUVB-like 2; hexameric 65.6 20 0.00069 30.6 7.6 65 62-126 259-329 (368)
57 1g8p_A Magnesium-chelatase 38 64.7 24 0.00081 29.7 7.8 48 79-126 267-321 (350)
58 4b4t_K 26S protease regulatory 64.3 4.8 0.00016 37.6 3.6 42 85-126 368-413 (428)
59 3k1j_A LON protease, ATP-depen 62.9 18 0.00061 34.4 7.3 51 78-128 313-376 (604)
60 1h3o_A Transcription initiatio 62.3 11 0.00037 27.8 4.5 43 65-108 10-52 (75)
61 3aji_B S6C, proteasome (prosom 62.3 6.6 0.00022 27.5 3.3 32 96-127 40-71 (83)
62 2qby_A CDC6 homolog 1, cell di 53.3 34 0.0012 28.7 6.8 66 63-128 198-273 (386)
63 1ldd_A APC2WHB, anaphase promo 51.4 12 0.00043 27.2 3.2 53 37-101 3-59 (74)
64 1r4v_A Hypothetical protein AQ 50.4 11 0.00039 31.7 3.2 60 60-120 25-84 (171)
65 1ixz_A ATP-dependent metallopr 42.7 36 0.0012 27.7 5.1 45 80-124 204-253 (254)
66 3h4m_A Proteasome-activating n 41.5 29 0.00099 28.5 4.4 42 85-126 212-257 (285)
67 1fnn_A CDC6P, cell division co 40.6 74 0.0025 26.9 7.0 64 64-127 195-274 (389)
68 2c9o_A RUVB-like 1; hexameric 39.4 67 0.0023 29.1 6.9 64 63-126 367-436 (456)
69 1iy2_A ATP-dependent metallopr 39.1 42 0.0014 27.9 5.1 45 80-124 228-277 (278)
70 1lv7_A FTSH; alpha/beta domain 38.8 34 0.0012 27.8 4.4 42 85-126 206-251 (257)
71 2qby_B CDC6 homolog 3, cell di 36.3 1.1E+02 0.0037 25.9 7.4 63 63-127 198-270 (384)
72 4b4t_J 26S protease regulatory 35.0 36 0.0012 31.6 4.4 42 85-126 343-388 (405)
73 1bh9_A TAFII18; histone fold, 33.9 76 0.0026 20.8 4.7 40 66-105 5-44 (45)
74 4b4t_I 26S protease regulatory 33.8 39 0.0013 31.9 4.4 42 85-126 377-422 (437)
75 4b4t_L 26S protease subunit RP 32.6 42 0.0014 31.3 4.4 42 85-126 376-421 (437)
76 4b4t_M 26S protease regulatory 32.6 39 0.0013 31.5 4.2 42 85-126 376-421 (434)
77 4b4t_H 26S protease regulatory 31.5 39 0.0013 32.2 4.1 42 85-126 404-449 (467)
78 1w5s_A Origin recognition comp 29.6 98 0.0033 26.4 6.0 67 61-128 214-294 (412)
79 3bos_A Putative DNA replicatio 27.4 92 0.0031 24.0 5.0 46 79-125 193-241 (242)
80 2r44_A Uncharacterized protein 25.2 2.7E+02 0.0091 23.3 7.9 29 98-126 268-296 (331)
81 2l6f_A Focal adhesion kinase 1 28.4 18 0.00061 31.5 0.0 15 212-226 179-193 (215)
82 3f9v_A Minichromosome maintena 20.6 55 0.0019 31.3 2.9 67 59-125 499-585 (595)
No 1
>4g92_C HAPE; transcription factor, nucleosome, minor groove binding, CCAA complex, histone fold motif, specific binding to the ccaat- nucleus; HET: DNA; 1.80A {Aspergillus nidulans} PDB: 4g91_C*
Probab=100.00 E-value=2.9e-35 Score=235.53 Aligned_cols=106 Identities=61% Similarity=1.059 Sum_probs=101.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHh-hcCCCCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Q 026901 34 QQQQQQLQMFWSYQRQEIEQA-NDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKR 112 (231)
Q Consensus 34 ~~~~~~l~~fW~~~~~eie~~-~d~k~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kR 112 (231)
.+.++.|.+||.+++++||.. .|+|++.||+||||||||.||++.+||++|++++++|||+||.+|+.+|+.+|+.+||
T Consensus 13 ~~~~~~l~~fw~~~~~~~e~~~~d~k~~~lPvaRIkrImK~d~~~~~is~eA~v~la~a~E~Fi~~L~~~A~~~a~~~kr 92 (119)
T 4g92_C 13 GTARDILTTYWQHVINHLESDNHDYKIHQLPLARIKKVMKADPEVKMISAEAPILFAKGCDVFITELTMRAWIHAEDNKR 92 (119)
T ss_dssp THHHHHHHHHHHHHHHHHTCSCCCSSCCSSCHHHHHHHHHTSTTCCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHHHhcccccccCCCCHHHHHHHHhhCCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 367899999999999999975 5999999999999999999999999999999999999999999999999999999999
Q ss_pred CcccHHHHHHHHhcCCccccccccCCC
Q 026901 113 RTLQKNDIAAAITRTDIFDFLVDIVPR 139 (231)
Q Consensus 113 KTLq~~DIa~AI~~~d~fdFL~DIVP~ 139 (231)
|||+++||+.||++++.|+||.||||+
T Consensus 93 ktI~~~di~~Av~~~e~~dFL~DiVPk 119 (119)
T 4g92_C 93 RTLQRSDIAAALSKSDMFDFLIDIVPR 119 (119)
T ss_dssp SEECHHHHHHHHTTCGGGGGGTTTCC-
T ss_pred CccCHHHHHHHHhcCchhhHHHHhCCC
Confidence 999999999999999999999999996
No 2
>1n1j_B NF-YC; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.96 E-value=3.9e-30 Score=198.80 Aligned_cols=94 Identities=68% Similarity=1.070 Sum_probs=77.3
Q ss_pred HHHHHHHHh--hcCCCCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHH
Q 026901 46 YQRQEIEQA--NDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAA 123 (231)
Q Consensus 46 ~~~~eie~~--~d~k~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~A 123 (231)
++++||++. .|++.+.||++|||||||.|+++.+||+||++++++|||+||.+|+.+||.+|+.+|||||+++||..|
T Consensus 2 ~~~~~~~~~~~~~~~~~~lP~arIkrImK~~~~~~~is~eA~~~laka~E~Fi~~l~~~A~~~a~~~krktI~~~di~~A 81 (97)
T 1n1j_B 2 SHMEEIRNLTVKDFRVQELPLARIKKIMKLDEDVKMISAEAPVLFAKAAQIFITELTLRAWIHTEDNKRRTLQRNDIAMA 81 (97)
T ss_dssp ------------------CCHHHHHHHHTTSTTCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHH
T ss_pred cHHHHHHhcccCCcCCCcCCHHHHHHHHccCccccccChHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHHHHH
Confidence 567888884 699999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCccccccccCCC
Q 026901 124 ITRTDIFDFLVDIVPR 139 (231)
Q Consensus 124 I~~~d~fdFL~DIVP~ 139 (231)
|++++.|+||.|+||+
T Consensus 82 v~~~e~~~FL~divP~ 97 (97)
T 1n1j_B 82 ITKFDQFDFLIDIVPR 97 (97)
T ss_dssp HTTCGGGGGGTTTSCC
T ss_pred HhcCcHHHHHHhhCCC
Confidence 9999999999999996
No 3
>1jfi_A Transcription regulator NC2 alpha chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.94 E-value=2.4e-27 Score=183.81 Aligned_cols=87 Identities=23% Similarity=0.314 Sum_probs=62.5
Q ss_pred CCCCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcccccccc
Q 026901 57 FKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 136 (231)
Q Consensus 57 ~k~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~fdFL~DI 136 (231)
...+.||++|||||||.|+++.+||++|++++++|||+|+.+|+.+||++|+.+|||||+++||..||++++.|+||.||
T Consensus 7 k~~~~fPvaRIkrimK~~~~~~~vs~~A~v~la~a~E~Fi~el~~~A~~~a~~~krktI~~~di~~av~~~e~l~FL~di 86 (98)
T 1jfi_A 7 KYNARFPPARIKKIMQTDEEIGKVAAAVPVIISRALELFLESLLKKACQVTQSRNAKTMTTSHLKQCIELEGDPAANKAR 86 (98)
T ss_dssp ---CCCCHHHHHHHHTTSTTCCCBCTTHHHHHHHHHHHHHHHHHHHHHHHHHTC---CBCHHHHHTTCC-----------
T ss_pred ccCCCCChHHHHHHHHcCccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHhcCchhhHHHhc
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCccch
Q 026901 137 VPRDEIK 143 (231)
Q Consensus 137 VP~~~~~ 143 (231)
+|++...
T Consensus 87 vp~k~~~ 93 (98)
T 1jfi_A 87 KEAELAA 93 (98)
T ss_dssp -------
T ss_pred CchHhhh
Confidence 9997543
No 4
>2byk_A Chrac-16; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_A
Probab=99.94 E-value=2.6e-27 Score=194.82 Aligned_cols=89 Identities=25% Similarity=0.446 Sum_probs=70.0
Q ss_pred cCCCCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHH-HHcCCCcccHHHHHHHHhcCCcccccc
Q 026901 56 DFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHA-EENKRRTLQKNDIAAAITRTDIFDFLV 134 (231)
Q Consensus 56 d~k~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A-~~~kRKTLq~~DIa~AI~~~d~fdFL~ 134 (231)
....+.||++|||||||.||++.+||++|+++|++|||+||++|+.+||.+| +.+|||||+|+||+.||.+.+.|+||.
T Consensus 14 ~~~~~~LPlaRIKrIMK~dpdv~~Is~eA~vliakA~ElFI~~Lt~~A~~~a~~~~kRKtI~~~Dl~~AV~~~e~~dFL~ 93 (140)
T 2byk_A 14 PTAETFLPLSRVRTIMKSSMDTGLITNEVLFLMTKCTELFVRHLAGAAYTEEFGQRPGEALKYEHLSQVVNKNKNLEFLL 93 (140)
T ss_dssp ---------------CCSSSSCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCEECHHHHHHHHHTCSTTGGGT
T ss_pred cccCCCCCHHHHHHHHhcCcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcccCHHHHHHHHhcCchhhhHh
Confidence 4567899999999999999999999999999999999999999999999999 999999999999999999999999999
Q ss_pred ccCCCccchh
Q 026901 135 DIVPRDEIKD 144 (231)
Q Consensus 135 DIVP~~~~~~ 144 (231)
||||++....
T Consensus 94 divP~ki~l~ 103 (140)
T 2byk_A 94 QIVPQKIRVH 103 (140)
T ss_dssp TTSCSCC---
T ss_pred ccccchhhHH
Confidence 9999976544
No 5
>2byk_B Chrac-14; nucleosome sliding, histone fold, DNA-binding protein; 2.4A {Drosophila melanogaster} SCOP: a.22.1.3 PDB: 2bym_B
Probab=99.83 E-value=4.9e-21 Score=155.10 Aligned_cols=78 Identities=27% Similarity=0.356 Sum_probs=71.7
Q ss_pred CCCCChHHHHHHHh-cCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcccccccc
Q 026901 59 NHQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 136 (231)
Q Consensus 59 ~~~LPLARIKRIMK-sDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~fdFL~DI 136 (231)
.+.||+|||+|||| .+|++.+||+||+++|++|||+||.+|+.+|+.+|...+||||+++||..|+.+.+.++||..+
T Consensus 7 d~~LP~A~I~rImK~~~pd~~~iS~dA~~~l~ka~e~FI~~lt~~A~~~a~~~kRKTI~~~Dv~~Al~~l~f~~fl~~l 85 (128)
T 2byk_B 7 DLNLPNAVIGRLIKEALPESASVSKEARAAIARAASVFAIFVTSSSTALAHKQNHKTITAKDILQTLTELDFESFVPSL 85 (128)
T ss_dssp ----CCSHHHHHHHHHSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHTTCTTTHHHH
T ss_pred cccCCHHHHHHHHHHhCcccceECHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHcCcHHHHHHH
Confidence 57899999999999 6899999999999999999999999999999999999999999999999999999999998754
No 6
>1n1j_A NF-YB; histone-like PAIR, DNA binding protein; 1.67A {Homo sapiens} SCOP: a.22.1.3
Probab=99.82 E-value=1.5e-20 Score=143.55 Aligned_cols=82 Identities=23% Similarity=0.308 Sum_probs=75.5
Q ss_pred CCCCCChHHHHHHHhcC-cchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcccccccc
Q 026901 58 KNHQLPLARIKKIMKAD-EDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVDI 136 (231)
Q Consensus 58 k~~~LPLARIKRIMKsD-pDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~fdFL~DI 136 (231)
..+.||+++|+||||.+ |++.+||+||..++++|||+||.+|+.+|+.+|.+.|||||+++||..|++ .|+|+.++
T Consensus 5 ~d~~LP~a~i~ri~K~~~~~~~~is~dA~~~l~~a~e~Fi~~l~~~A~~~a~~~kRkTI~~~Dv~~Al~---~l~F~~~i 81 (93)
T 1n1j_A 5 QDIYLPIANVARIMKNAIPQTGKIAKDAKECVQECVSEFISFITSEASERCHQEKRKTINGEDILFAMS---TLGFDSYV 81 (93)
T ss_dssp --CCCCHHHHHHHHHHTSCTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH---HTTCGGGH
T ss_pred ccccCChhHHHHHHHHhCCccceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHH---HcCcHhhH
Confidence 46789999999999999 999999999999999999999999999999999999999999999999998 78899888
Q ss_pred CCCccc
Q 026901 137 VPRDEI 142 (231)
Q Consensus 137 VP~~~~ 142 (231)
.|.+..
T Consensus 82 ~~~~~~ 87 (93)
T 1n1j_A 82 EPLKLY 87 (93)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 876543
No 7
>1b67_A Protein (histone HMFA); DNA binding protein; 1.48A {Methanothermus fervidus} SCOP: a.22.1.2 PDB: 1hta_A 1a7w_A 1b6w_A 1bfm_A
Probab=99.63 E-value=6.8e-16 Score=111.11 Aligned_cols=65 Identities=29% Similarity=0.349 Sum_probs=62.5
Q ss_pred CCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 61 QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 61 ~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
.||.++|+||||.+ +..+||+||..++++|+|.|+.+|+.+|+.+|.+.|||||+++||..|++.
T Consensus 2 ~lP~a~v~Ri~k~~-~~~ris~~A~~~l~~a~e~fi~~l~~~A~~~a~~~kRkTI~~~Di~~A~~~ 66 (68)
T 1b67_A 2 ELPIAPIGRIIKNA-GAERVSDDARIALAKVLEEMGEEIASEAVKLAKHAGRKTIKAEDIELARKM 66 (68)
T ss_dssp CSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHGGG
T ss_pred CCCccHHHHHHhcC-CcccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHh
Confidence 59999999999999 678999999999999999999999999999999999999999999999875
No 8
>3b0c_W CENP-W, centromere protein W; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_W* 3vh5_W 3vh6_W
Probab=99.62 E-value=9.7e-16 Score=113.30 Aligned_cols=66 Identities=23% Similarity=0.332 Sum_probs=61.7
Q ss_pred CCCChHHHHHHHh-cCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 60 HQLPLARIKKIMK-ADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 60 ~~LPLARIKRIMK-sDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
..||+|+|+|||| ..|++ +||+||..++.++||+||++|+.+|.+.|..++||||+++||..|++.
T Consensus 3 ~~LP~A~V~rI~K~~~p~~-~is~~A~~~i~~~~~~Fi~~la~eA~~~a~~~~rKTI~~~dI~~A~~~ 69 (76)
T 3b0c_W 3 RTVPRGTLRKIIKKHKPHL-RLAANTDLLVHLSFLLFLHRLAEEARTNAFENKSKIIKPEHTIAAAKV 69 (76)
T ss_dssp -CCCHHHHHHHHHHHCTTC-EECTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred CcccccHHHHHHHHhCCCC-ccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 5799999999999 67874 799999999999999999999999999999999999999999999874
No 9
>1jfi_B DR1 protein, transcription regulator NC2 beta chain; histone, H2A/H2B, tata-DNA, transcription initiation, NC2, negative cofactor, structural genomics, PSI; 2.62A {Homo sapiens} SCOP: a.22.1.3
Probab=99.57 E-value=3e-15 Score=127.67 Aligned_cols=79 Identities=15% Similarity=0.290 Sum_probs=72.3
Q ss_pred CCCCCCChHHHHHHHhcC-cchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCccccccc
Q 026901 57 FKNHQLPLARIKKIMKAD-EDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVD 135 (231)
Q Consensus 57 ~k~~~LPLARIKRIMKsD-pDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~fdFL~D 135 (231)
...+.||+++|.||||.. | ..+||+||..+|++||++||.+|+..|+++|...+||||+++||..|+++.+..+|+..
T Consensus 11 ~eD~~LP~A~V~RImK~alp-~~rISkDA~~al~ec~~eFI~~LtseA~e~a~~~~RKTI~~eDVl~Al~~LgF~~fv~~ 89 (179)
T 1jfi_B 11 DDDLTIPRAAINKMIKETLP-NVRVANDARELVVNCCTEFIHLISSEANEICNKSEKKTISPEHVIQALESLGFGSYISE 89 (179)
T ss_dssp -CCCCCCHHHHHHHHHHHST-TCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHTTGGGHHH
T ss_pred hhhhhcCHHHHHHHHHHhCC-ccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHhcChHHHHHH
Confidence 446789999999999997 5 67999999999999999999999999999999999999999999999998888887764
Q ss_pred c
Q 026901 136 I 136 (231)
Q Consensus 136 I 136 (231)
+
T Consensus 90 l 90 (179)
T 1jfi_B 90 V 90 (179)
T ss_dssp H
T ss_pred H
Confidence 3
No 10
>1id3_C Histone H2A.1; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.50 E-value=3.7e-14 Score=115.44 Aligned_cols=77 Identities=18% Similarity=0.328 Sum_probs=74.6
Q ss_pred CCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCccccccc
Q 026901 59 NHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVD 135 (231)
Q Consensus 59 ~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~fdFL~D 135 (231)
.+.||++||+||||.+....+||.+|+++|+.++|+|+.++...|++.|+.++|++|+.+||..||.++++|+||..
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hI~lAI~nDeEL~~Ll~ 99 (131)
T 1id3_C 23 GLTFPVGRVHRLLRRGNYAQRIGSGAPVYLTAVLEYLAAEILELAGNAARDNKKTRIIPRHLQLAIRNDDELNKLLG 99 (131)
T ss_dssp TCSSCHHHHHHHHHTTCSCSEECSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTCHHHHHHTT
T ss_pred CeecCHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhccHHHHHHhc
Confidence 57999999999999998999999999999999999999999999999999999999999999999999999999884
No 11
>2nqb_C Histone H2A; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_C*
Probab=99.48 E-value=5.3e-14 Score=113.33 Aligned_cols=77 Identities=21% Similarity=0.341 Sum_probs=74.4
Q ss_pred CCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCccccccc
Q 026901 59 NHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVD 135 (231)
Q Consensus 59 ~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~fdFL~D 135 (231)
.+.||++||+||||.+....+||.+|+++++.++|+|+.++...|++.|..++|++|+.+||..||.++++|++|..
T Consensus 21 gL~fPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~Ll~ 97 (123)
T 2nqb_C 21 GLQFPVGRIHRLLRKGNYAERVGAGAPVYLAAVMEYLAAEVLELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLS 97 (123)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred CeeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccHHHHHHHHhccHHHHHHhc
Confidence 58899999999999998889999999999999999999999999999999999999999999999999999999874
No 12
>1tzy_A Histone H2A-IV; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_A 1hq3_A 2aro_A 2hio_A 3c9k_A 3azg_C 3a6n_C 3an2_C 3av1_C 3av2_C 3ayw_C 3aze_C 3azf_C 3afa_C 3azh_C 3azi_C 3azj_C 3azk_C 3azl_C 3azm_C ...
Probab=99.47 E-value=7.4e-14 Score=113.40 Aligned_cols=77 Identities=19% Similarity=0.338 Sum_probs=74.5
Q ss_pred CCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCccccccc
Q 026901 59 NHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVD 135 (231)
Q Consensus 59 ~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~fdFL~D 135 (231)
.+.||++||+||||.+....+||.+|+++++.++|+|+.++...|++.|..++|++|+.+||..||.++++|++|..
T Consensus 23 gLqfPV~rI~R~Lk~~~~a~RVs~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItp~hi~lAI~nDeEL~~L~~ 99 (129)
T 1tzy_A 23 GLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 99 (129)
T ss_dssp TCSSCHHHHHHHHHHTTSSSEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred ceeccHHHHHHHHHccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHHHHhC
Confidence 58999999999999998889999999999999999999999999999999999999999999999999999999884
No 13
>2f8n_G Core histone macro-H2A.1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Homo sapiens} SCOP: a.22.1.1 PDB: 1u35_C
Probab=99.47 E-value=6.2e-14 Score=112.56 Aligned_cols=77 Identities=19% Similarity=0.283 Sum_probs=74.3
Q ss_pred CCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCccccccc
Q 026901 59 NHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVD 135 (231)
Q Consensus 59 ~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~fdFL~D 135 (231)
.+.||++||+|+||.+....+||.+|+++++.++|+|+.++...|.+.|+.+||++|+.+||..||.++++|++|..
T Consensus 20 gLqfPV~ri~R~Lk~~~~a~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~~rItp~hi~lAI~nDeEL~~Ll~ 96 (120)
T 2f8n_G 20 GVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAVNAARDNKKGRVTPRHILLAVANDEELNQLLK 96 (120)
T ss_dssp TCSSCHHHHHHHHHHHSSSCEECTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTSHHHHHHTT
T ss_pred CccCChHHHHHHHHcCccccccccchHHHHHHHHHHHHHHHHHHHHHHHhhcCCceEcHHHHHHHHhcCHHHHHHhC
Confidence 57899999999999998889999999999999999999999999999999999999999999999999999999984
No 14
>1f66_C Histone H2A.Z; nucleosome, chromatin, histone variant, protein DNA interaction, nucleoprotein, supercoiled DNA, complex (nucleosome core/DNA); 2.60A {Homo sapiens} SCOP: a.22.1.1
Probab=99.45 E-value=1.1e-13 Score=112.24 Aligned_cols=77 Identities=19% Similarity=0.250 Sum_probs=73.6
Q ss_pred CCCCChHHHHHHHhcCcch-hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCccccccc
Q 026901 59 NHQLPLARIKKIMKADEDV-RMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVD 135 (231)
Q Consensus 59 ~~~LPLARIKRIMKsDpDV-~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~fdFL~D 135 (231)
.+.||++||+|+||.+.+. .+||.+|+++++.++|+|+.++...|.+.|..+||++|+.+||..||.++++|++|.+
T Consensus 25 gLqfPV~ri~R~Lk~~~~a~~RV~~~A~VyLaAvLEyL~aEIlelAgn~A~~~k~krItprhi~lAI~nDeEL~~Ll~ 102 (128)
T 1f66_C 25 GLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK 102 (128)
T ss_dssp TCSSCHHHHHHHHHHTSCSSCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHHSHHHHHHCC
T ss_pred CccCChHHHHHHHHHcccchhhccccHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeEcHHHHHHHHhccHHHhhhhc
Confidence 5789999999999999766 4999999999999999999999999999999999999999999999999999999986
No 15
>2f8n_K Histone H2A type 1; nucleosome, NCP, macroh2A, histone variant, chromatin, X- RAY structure, crystallography, structural protein/DNA complex; 2.90A {Mus musculus} SCOP: a.22.1.1
Probab=99.43 E-value=1.7e-13 Score=113.84 Aligned_cols=77 Identities=19% Similarity=0.333 Sum_probs=74.5
Q ss_pred CCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCccccccc
Q 026901 59 NHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVD 135 (231)
Q Consensus 59 ~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~fdFL~D 135 (231)
.+.||++||+|+||.+....+|+.+|+++++.++|+|+.++...|++.|+.++|++|+.+||..||.++++|++|..
T Consensus 42 gLqFPVgrI~R~LK~~~~a~RVs~~A~VyLAAVLEYL~aEILelAgn~A~~~krkrItprhI~lAI~nDeEL~~Ll~ 118 (149)
T 2f8n_K 42 GLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG 118 (149)
T ss_dssp TCSSCHHHHHHHHHHTTSCSEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHSHHHHHHTT
T ss_pred CeeccHHHHHHHHHccccccccCcCcHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHhccHHHHHHhc
Confidence 58999999999999998899999999999999999999999999999999999999999999999999999999874
No 16
>1ku5_A HPHA, archaeal histon; histone fold, DNA binding protein; 2.30A {Pyrococcus horikoshii} SCOP: a.22.1.2
Probab=99.31 E-value=5e-12 Score=91.66 Aligned_cols=66 Identities=23% Similarity=0.399 Sum_probs=62.6
Q ss_pred CCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 60 HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 60 ~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
..||.++|+||||.. ++.+||.+|...+..++|.|+..++..|..+|++.|||||+.+||..|+++
T Consensus 5 ~~lp~a~v~Rl~r~~-g~~ris~~a~~~l~e~~~~~~~~v~~dA~~~a~hakRkTI~~~DV~lA~~~ 70 (70)
T 1ku5_A 5 GELPIAPVDRLIRKA-GAERVSEQAAKVLAEYLEEYAIEIAKKAVEFARHAGRKTVKVEDIKLAIKS 70 (70)
T ss_dssp CCSCHHHHHHHHHHT-TCSEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHTC
T ss_pred ccCChHHHHHHHHHc-CcceeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHC
Confidence 479999999999987 688999999999999999999999999999999999999999999999863
No 17
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.29 E-value=6.3e-12 Score=104.84 Aligned_cols=73 Identities=26% Similarity=0.322 Sum_probs=67.7
Q ss_pred hhcCCCCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcC
Q 026901 54 ANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRT 127 (231)
Q Consensus 54 ~~d~k~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~ 127 (231)
+.|.-.+.||++.|.||||.. ++.+||.+|...++.++|.|+.+++..|...|++.|||||+.+||..|+++.
T Consensus 75 v~d~~~l~lP~a~V~Ri~k~~-g~~RVS~~A~~~l~~~le~f~~~I~~~A~~~a~ha~RKTIt~eDV~~Al~~~ 147 (154)
T 1f1e_A 75 VEDYDGELFGRATVRRILKRA-GIERASSDAVDLYNKLICRATEELGEKAAEYADEDGRKTVQGEDVEKAITYS 147 (154)
T ss_dssp STTCCSCCCCHHHHHHHHHHT-TCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHH
T ss_pred CCccccccCCccHHHHHHHHc-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhc
Confidence 344567889999999999999 7789999999999999999999999999999999999999999999999763
No 18
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=99.28 E-value=4.4e-12 Score=108.27 Aligned_cols=77 Identities=22% Similarity=0.289 Sum_probs=73.7
Q ss_pred CCCCChHHHHHHHhcCcch-hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCccccccc
Q 026901 59 NHQLPLARIKKIMKADEDV-RMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVD 135 (231)
Q Consensus 59 ~~~LPLARIKRIMKsDpDV-~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~fdFL~D 135 (231)
.+.||++||+|+||.+... .+|+.+|++.++.++|+|+.++...|.+.|+.+||++|+.+||..||.++++|++|.+
T Consensus 103 gl~fPv~ri~R~lk~~~~a~~Rv~~~A~vyLaavLEyl~~eIlelA~n~a~~~~~~~I~p~~i~lAi~nD~eL~~L~~ 180 (192)
T 2jss_A 103 GLQFPVGRIKRYLKRHATGRTRVGSKAAIYLTAVLEYLTAEVLELAGNAAKDLKVKRITPRHLQLAIRGDDELDSLIR 180 (192)
T ss_dssp SCCSCHHHHHHHHHHTTCSSCCCCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHTSHHHHHHHC
T ss_pred CCcCCHHHHHHHHHhcCccccccccChHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHhccHHHHHHHh
Confidence 6899999999999998765 5999999999999999999999999999999999999999999999999999999986
No 19
>3b0c_T CENP-T, centromere protein T; histone fold, DNA binding, DNA binding protein; HET: CIT; 2.20A {Gallus gallus} PDB: 3b0d_T* 3vh5_T 3vh6_T
Probab=99.19 E-value=3e-11 Score=95.55 Aligned_cols=77 Identities=13% Similarity=0.179 Sum_probs=66.8
Q ss_pred CCCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCccccccc
Q 026901 58 KNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIFDFLVD 135 (231)
Q Consensus 58 k~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~fdFL~D 135 (231)
+...||.+-|+||||.. .+.+||.++...+..+++.|+..++..|...|++.|||||+.+||..|+++...+.|..+
T Consensus 4 ~d~~lP~a~I~Ri~r~~-g~~rIS~~a~~~l~e~l~~f~~~v~~da~~~A~HA~RKTV~~eDV~lalrr~g~~~~~~~ 80 (111)
T 3b0c_T 4 REPEIASSLIKQIFSHY-VKTPVTRDAYKIVEKCSERYFKQISSDLEAYSQHAGRKTVEMADVELLMRRQGLVTDKMP 80 (111)
T ss_dssp ------CHHHHHHHHHH-HCSCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTTSSBTTBC
T ss_pred CCCCCCHHHHHHHHHHC-CCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHCCCcccccc
Confidence 46689999999999999 678999999999999999999999999999999999999999999999999887766554
No 20
>1f1e_A Histone fold protein; archaeal histone protein, DNA binding protein; HET: MSE; 1.37A {Methanopyrus kandleri} SCOP: a.22.1.2
Probab=99.15 E-value=7.7e-11 Score=98.30 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=62.7
Q ss_pred CCCChHHHHHHHhcC-cchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 60 HQLPLARIKKIMKAD-EDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 60 ~~LPLARIKRIMKsD-pDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
..||.+.|+||||.. ++ .+||.||...+++++|.|+.+++..|...|++.|||||+.+||..|+..
T Consensus 3 ~~LP~a~V~Riik~~lg~-~rVS~dA~~~l~~~l~~f~~~i~~~A~~~a~ha~RKTv~a~DV~~a~~~ 69 (154)
T 1f1e_A 3 VELPKAAIERIFRQGIGE-RRLSQDAKDTIYDFVPTMAEYVANAAKSVLDASGKKTLMEEHLKALADV 69 (154)
T ss_dssp -CCCHHHHHHHHHTTSTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCSEECHHHHHHHHHH
T ss_pred ccCCccHHHHHHHhcCCc-cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHh
Confidence 469999999999999 77 8999999999999999999999999999999999999999999999965
No 21
>1tzy_D Histone H4-VI; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1f66_B 1eqz_D 1hq3_D 1u35_B 2aro_D 2cv5_B* 2f8n_B 3nqu_B 3r45_B 3azg_B 3a6n_B 3an2_B 3av1_B 3av2_B 3ayw_B 3aze_B 3azf_B 3afa_B 3azh_B 3azk_B ...
Probab=99.14 E-value=1.3e-10 Score=90.43 Aligned_cols=67 Identities=18% Similarity=0.219 Sum_probs=63.8
Q ss_pred CCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCC
Q 026901 61 QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 128 (231)
Q Consensus 61 ~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d 128 (231)
-||.++|+||+|.. .+.+||.+|...++.++|.|+.+++..|..+|++.+||||+.+||..|+++.-
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktIt~~DV~~Alr~~g 95 (103)
T 1tzy_D 29 GITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQG 95 (103)
T ss_dssp GSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHTT
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHcC
Confidence 49999999999998 56899999999999999999999999999999999999999999999998764
No 22
>2yfw_B Histone H4, H4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.60A {Kluyveromyces lactis nrrl y-1140}
Probab=99.13 E-value=1.1e-10 Score=90.82 Aligned_cols=67 Identities=18% Similarity=0.220 Sum_probs=63.2
Q ss_pred CCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCC
Q 026901 61 QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 128 (231)
Q Consensus 61 ~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d 128 (231)
.||.++|+||+|.. .+.+||.+|...++.++|.|+.+++..|..+|++.+||||+.+||..|+++..
T Consensus 29 gip~~~I~Rlar~~-G~~rIs~~a~~~l~~vle~~~~~V~~dA~~~a~hakRktvt~~DV~~Alr~~g 95 (103)
T 2yfw_B 29 GITKPAIRRLARRG-GVKRISGLIYEEVRNVLKTFLESVIRDAVTYTEHAKRKTVTSLDVVYALKRQG 95 (103)
T ss_dssp -CCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHc-CccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHcC
Confidence 39999999999998 56899999999999999999999999999999999999999999999998753
No 23
>2hue_C Histone H4; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis} SCOP: a.22.1.1 PDB: 3nqj_B 1aoi_B 3kwq_B* 1hio_D 2yfv_B
Probab=99.08 E-value=3.7e-10 Score=84.89 Aligned_cols=68 Identities=18% Similarity=0.208 Sum_probs=64.6
Q ss_pred CCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcC
Q 026901 59 NHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRT 127 (231)
Q Consensus 59 ~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~ 127 (231)
...||.+.|+||+|.. .+.+||.++...+..++|.|++.++.+|..+|++.|||||+.+||..|+++.
T Consensus 8 ~~~ip~~~I~Riar~~-Gv~rIs~da~~~l~~~l~~~~~~I~~dA~~~a~ha~RKTvt~~DV~~Alk~~ 75 (84)
T 2hue_C 8 IQGITKPAIRRLARRG-GVKRISGLIYEETRGVLKVFLENVIRDAVTYTEHAKRKTVTAMDVVYALKRQ 75 (84)
T ss_dssp CCSSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTT
T ss_pred CCCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 4569999999999998 6899999999999999999999999999999999999999999999999876
No 24
>1id3_B Histone H4; nucleosome core particle, chromatin, protein/DNA interaction, nucleoprotein, supercoiled DNA; 3.10A {Saccharomyces cerevisiae} SCOP: a.22.1.1
Probab=99.06 E-value=4.3e-10 Score=87.70 Aligned_cols=67 Identities=19% Similarity=0.221 Sum_probs=63.9
Q ss_pred CCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcC
Q 026901 60 HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRT 127 (231)
Q Consensus 60 ~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~ 127 (231)
..||.+.|+||++.. .+.+||.++...+..++|.|+++++.+|..+|++.+||||+.+||..|+++.
T Consensus 27 ~~ip~~~I~Rlar~~-Gv~rIS~da~~~l~~~le~fi~~I~~dA~~~a~HakRKTVt~~DV~~ALkr~ 93 (102)
T 1id3_B 27 QGITKPAIRRLARRG-GVKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 93 (102)
T ss_dssp GGSCHHHHHHHHHHT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHc-CchhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcCcHHHHHHHHHHc
Confidence 349999999999998 6889999999999999999999999999999999999999999999999876
No 25
>1taf_B TFIID TBP associated factor 62; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.75 E-value=3.5e-08 Score=72.61 Aligned_cols=66 Identities=17% Similarity=0.207 Sum_probs=62.6
Q ss_pred CCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHh
Q 026901 59 NHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 125 (231)
Q Consensus 59 ~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~ 125 (231)
...||++-||+|.++- ++.++|.||...|+.-+|+-+.+++.+|.+.+++.|||||+.+||..|++
T Consensus 4 ~s~lp~~~v~~iaes~-Gi~~lsddaa~~LA~dvEyr~~eI~qeA~kfmrHakRk~Lt~~DI~~Alk 69 (70)
T 1taf_B 4 GSSISAESMKVIAESI-GVGSLSDDAAKELAEDVSIKLKRIVQDAAKFMNHAKRQKLSVRDIDMSLK 69 (70)
T ss_dssp SCCCCHHHHHHHHHHT-TCCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHC
T ss_pred cccCCHHHHHHHHHHC-CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCeecHHHHHHHHc
Confidence 4679999999999998 67899999999999999999999999999999999999999999999874
No 26
>1taf_A TFIID TBP associated factor 42; transcription initiation, histone fold, complex (TWO transcr factors); 2.00A {Drosophila melanogaster} SCOP: a.22.1.3
Probab=98.13 E-value=9.1e-06 Score=59.37 Aligned_cols=61 Identities=13% Similarity=0.133 Sum_probs=57.2
Q ss_pred HHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 65 ARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 65 ARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
-.|.+|+|+- ++..+|.+++..|...++.++.++++.|...|++.+||||+.+||..||+.
T Consensus 5 ~~i~~iLk~~-G~~~~~~~v~~~L~e~~~ry~~~il~dA~~~a~HAgrktv~~eDVkLAi~~ 65 (68)
T 1taf_A 5 QVIMSILKEL-NVQEYEPRVVNQLLEFTFRYVTSILDDAKVYANHARKKTIDLDDVRLATEV 65 (68)
T ss_dssp HHHHHHHHHT-TCCCBCTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHHHC-CCcccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHh
Confidence 3588999986 788999999999999999999999999999999999999999999999975
No 27
>1tzy_C Histone H3; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_C 1hq3_C 2aro_C 2f8n_A 2hio_C 3av1_A 3lel_A 3afa_A 3azi_A 3azj_A 3azk_A 3azl_A 3azm_A 3azn_A 2cv5_A* 1u35_A* 2nqb_A 2io5_B 2pyo_A* 3c9k_C ...
Probab=98.10 E-value=1.4e-05 Score=65.42 Aligned_cols=78 Identities=19% Similarity=0.203 Sum_probs=64.9
Q ss_pred HHHHHHHhhcCCCCCCChHHHHHHHhcC-----cchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHH
Q 026901 47 QRQEIEQANDFKNHQLPLARIKKIMKAD-----EDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 121 (231)
Q Consensus 47 ~~~eie~~~d~k~~~LPLARIKRIMKsD-----pDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa 121 (231)
.+.||......-++.||...+.|+++.- .| -+++.+|+.+|..|+|.|+..|...++.+|.+.||.||..+||.
T Consensus 48 alrEIr~yQkst~lLIpk~PF~RLVREI~~~~~~~-~R~q~~Al~aLQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDiq 126 (136)
T 1tzy_C 48 ALREIRRYQKSTELLIRKLPFQRLVREIAQDFKTD-LRFQSSAVMALQEASEAYLVGLFEDTNLCAIHAKRVTIMPKDIQ 126 (136)
T ss_dssp HHHHHHHHHHCCSCCSCHHHHHHHHHHHHHHHCTT-CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHHhhcchhhhhccchHHHHHHHHHHHhhhh-hcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHhHH
Confidence 3567777666666677776666666553 34 48999999999999999999999999999999999999999999
Q ss_pred HHHh
Q 026901 122 AAIT 125 (231)
Q Consensus 122 ~AI~ 125 (231)
.|..
T Consensus 127 La~r 130 (136)
T 1tzy_C 127 LARR 130 (136)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 28
>2hue_B Histone H3; mini beta sheet, elongated beta sandwhich, DNA binding prote; 1.70A {Xenopus laevis}
Probab=98.08 E-value=1.2e-05 Score=60.18 Aligned_cols=49 Identities=24% Similarity=0.222 Sum_probs=46.4
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 78 RMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 78 ~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
-+++.+|..++..|+|.|+..|.+.+..+|.+.||+||..+||..|..-
T Consensus 24 ~R~q~~Al~aLQea~Eaylv~lfeda~l~A~HAkRvTi~~kDiqLa~ri 72 (77)
T 2hue_B 24 LRFQSSAVMALQEASEAYLVALFEDTNLCAIHAKRVTIMPKDIQLARRI 72 (77)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHhhHHHHHHH
Confidence 5899999999999999999999999999999999999999999988653
No 29
>4dra_A Centromere protein S; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_A
Probab=98.08 E-value=4.3e-06 Score=66.70 Aligned_cols=63 Identities=11% Similarity=0.107 Sum_probs=55.2
Q ss_pred HHHHHhcCc---chhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcc
Q 026901 67 IKKIMKADE---DVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIF 130 (231)
Q Consensus 67 IKRIMKsDp---DV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~f 130 (231)
|-||++... ++ .||.++...|+..++.|+..|+..+...|+..|||||+.+||..++++++.+
T Consensus 33 V~rIvke~gaer~~-~vS~~ai~aL~El~~~~~~~ia~Dl~~fAkHAgRkTI~~eDV~La~Rr~~~L 98 (113)
T 4dra_A 33 VGCLCEEVALDKEM-QFSKQTIAAISELTFRQCENFAKDLEMFARHAKRTTINTEDVKLLARRSNSL 98 (113)
T ss_dssp HHHHHHHHHHHHTC-CBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHHHHcCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHhCHHH
Confidence 556666531 22 4999999999999999999999999999999999999999999999998765
No 30
>2yfv_A Histone H3-like centromeric protein CSE4; cell cycle, kinetochore, centromere, histone chaperone, BUDD; 2.32A {Kluyveromyces lactis nrrl y-1140} PDB: 2yfw_A
Probab=98.02 E-value=1.3e-05 Score=62.62 Aligned_cols=78 Identities=18% Similarity=0.174 Sum_probs=53.4
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHhcCc-------chhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHH
Q 026901 48 RQEIEQANDFKNHQLPLARIKKIMKADE-------DVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 120 (231)
Q Consensus 48 ~~eie~~~d~k~~~LPLARIKRIMKsDp-------DV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DI 120 (231)
+.||.......++.||.....|++|.-. ..-+++.+|..++..|+|.|+..|...|+.+|.+.||.||..+||
T Consensus 14 lrEIr~yQkst~llIpk~PF~RLVREI~~~~~~~~~~~R~q~~Al~ALQeaaEayLv~Lfeda~l~A~HAkRvTi~~kDi 93 (100)
T 2yfv_A 14 LAEIRKYQRSTDLLISRMPFARLVKEVTDQFTTESEPLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMRKDM 93 (100)
T ss_dssp --------------CCHHHHHHHHHHHHHTTC-----CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHH
T ss_pred HHHHHhhcccchhhhccccHHHHHHHHHHHhccccchhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCCHHHH
Confidence 4566665555556666666666555421 135899999999999999999999999999999999999999999
Q ss_pred HHHHh
Q 026901 121 AAAIT 125 (231)
Q Consensus 121 a~AI~ 125 (231)
..|..
T Consensus 94 qLa~r 98 (100)
T 2yfv_A 94 QLARR 98 (100)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 98863
No 31
>3r45_A Histone H3-like centromeric protein A; histone fold, centromere, CENP-A, histone chaperone, hjurp; 2.60A {Homo sapiens}
Probab=98.02 E-value=9.3e-06 Score=67.93 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=57.1
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHhcCc------chhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHH
Q 026901 48 RQEIEQANDFKNHQLPLARIKKIMKADE------DVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 121 (231)
Q Consensus 48 ~~eie~~~d~k~~~LPLARIKRIMKsDp------DV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa 121 (231)
+.||.......++.||...+.||+|.-. ..-+++.+|+.+|..|+|.|+..|...|+.+|...||+||..+||.
T Consensus 64 LrEIR~yQkSteLLIpKlPF~RLVREIa~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEdanLcAiHAkRVTIm~kDIq 143 (156)
T 3r45_A 64 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQ 143 (156)
T ss_dssp -----------CCCSCHHHHHHHHHHHHHTTTTTCCCEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSEECHHHHH
T ss_pred HHHHHHhccccccccccccHHHHHHHHHHHhccCccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 7788876666677777777777776521 1237999999999999999999999999999999999999999998
Q ss_pred HHHh
Q 026901 122 AAIT 125 (231)
Q Consensus 122 ~AI~ 125 (231)
.|..
T Consensus 144 LArr 147 (156)
T 3r45_A 144 LARR 147 (156)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8763
No 32
>3b0b_B CENP-S, centromere protein S; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus}
Probab=98.00 E-value=7.2e-06 Score=64.70 Aligned_cols=64 Identities=11% Similarity=0.071 Sum_probs=55.1
Q ss_pred HHHHHhcCcc--hhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcc
Q 026901 67 IKKIMKADED--VRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIF 130 (231)
Q Consensus 67 IKRIMKsDpD--V~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~f 130 (231)
|.||++.... -..+|.+++..|+..++.|+..|+..+...|++.|||||+.+||..++++++.+
T Consensus 25 V~rI~~~~g~~~~~~vs~~~i~aL~E~~~~~~~~ia~Da~~fA~HAgRkTI~~eDV~La~Rrn~~l 90 (107)
T 3b0b_B 25 TGCLCQDVAEDKGVLFSKQTVAAISEITFRQCENFARDLEMFARHAKRSTITSEDVKLLARRSNSL 90 (107)
T ss_dssp HHHHHHHHHHHHTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred HHHHHHHHhhhcCCccCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCcCCHHHHHHHHHhCHHH
Confidence 5566655321 137999999999999999999999999999999999999999999999998654
No 33
>3nqu_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.50A {Homo sapiens} PDB: 3an2_A
Probab=98.00 E-value=1.3e-05 Score=66.05 Aligned_cols=78 Identities=18% Similarity=0.141 Sum_probs=54.3
Q ss_pred HHHHHHhhcCCCCCCChHHHHHHHhcCc------chhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHH
Q 026901 48 RQEIEQANDFKNHQLPLARIKKIMKADE------DVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIA 121 (231)
Q Consensus 48 ~~eie~~~d~k~~~LPLARIKRIMKsDp------DV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa 121 (231)
+.||.......++.||...+.|+++.-. ..-+++.+|+.+|..|+|.|+..|...|+.+|.+.||+||..+||.
T Consensus 48 LrEIR~yQkst~LLIpKlPF~RLVREI~~~~~~~~~~Rfq~~Al~ALQEAaEayLv~LFEdanlcAiHAkRVTIm~kDiq 127 (140)
T 3nqu_A 48 LKEIRKLQKSTHLLIRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQ 127 (140)
T ss_dssp -----------CCCSCTTHHHHHHHHHHHHHHTTCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHH
T ss_pred HHHHHHhccccccccccccHHHHHHHHHHHhcccccceecHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcccccHHHHH
Confidence 6777765544555555555555554421 1248999999999999999999999999999999999999999998
Q ss_pred HHHh
Q 026901 122 AAIT 125 (231)
Q Consensus 122 ~AI~ 125 (231)
.|..
T Consensus 128 LArr 131 (140)
T 3nqu_A 128 LARR 131 (140)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8864
No 34
>3nqj_A Histone H3-like centromeric protein A; alpha helix, histone fold, centromere, DNA binding protein; 2.10A {Homo sapiens}
Probab=97.98 E-value=2.2e-05 Score=59.33 Aligned_cols=64 Identities=19% Similarity=0.152 Sum_probs=52.5
Q ss_pred CChHHHHHHHhcCc------chhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHh
Q 026901 62 LPLARIKKIMKADE------DVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 125 (231)
Q Consensus 62 LPLARIKRIMKsDp------DV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~ 125 (231)
+|.....|++|.-. ..-+++.+|..++..|+|.|+..|...|+.+|.+.||+||..+||..|..
T Consensus 4 I~klPF~RLVREI~~~~~~~~~~R~q~~Al~aLQea~E~ylv~Lfeda~lcAiHAkRvTi~~kDiqLa~r 73 (82)
T 3nqj_A 4 IRKLPFSRLAREICVKFTRGVDFNWQAQALLALQEAAEAFLVHLFEDAYLLTLHAGRVTLFPKDVQLARR 73 (82)
T ss_dssp SCHHHHHHHHHHHHHHHHSSCCCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred cccccHHHHHHHHHHHhccCccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCcHHHHHHHHH
Confidence 45555555555421 12489999999999999999999999999999999999999999988754
No 35
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=97.97 E-value=1.4e-05 Score=64.38 Aligned_cols=54 Identities=20% Similarity=0.161 Sum_probs=51.3
Q ss_pred cchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCC
Q 026901 75 EDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 128 (231)
Q Consensus 75 pDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d 128 (231)
.++++||.++...+..++|.|++.+++.|...+++.+||||+..||..|+++..
T Consensus 60 gGvkRIS~~iy~e~r~vl~~~l~~i~rdav~yaehA~RKTVta~DV~~Alkr~G 113 (121)
T 2ly8_A 60 RGSKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQG 113 (121)
T ss_dssp CCSSCCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCBCHHHHHHHHHHTT
T ss_pred cCccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhCC
Confidence 478999999999999999999999999999999999999999999999998764
No 36
>3v9r_A MHF1, uncharacterized protein YOL086W-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=97.86 E-value=2.6e-05 Score=59.83 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=50.0
Q ss_pred ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcc
Q 026901 79 MISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIF 130 (231)
Q Consensus 79 ~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~f 130 (231)
.||.++...|+..++.++..|+..+...|++.|||||+.+||..++++++.+
T Consensus 32 ~vs~~~i~aL~e~~~~~~~~ia~Dl~~fA~HAgRkTI~~eDV~L~~Rrn~~L 83 (90)
T 3v9r_A 32 KYTPRFINSLLELAYLQLGEMGSDLQAFARHAGRGVVNKSDLMLYLRKQPDL 83 (90)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHTTTCHHH
T ss_pred eeCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhChHH
Confidence 5999999999999999999999999999999999999999999999998765
No 37
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=97.78 E-value=1.6e-05 Score=70.31 Aligned_cols=94 Identities=16% Similarity=0.138 Sum_probs=71.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHhhcCC------------------CCC--CChH----HHH------------HHHhcCcc
Q 026901 33 IQQQQQQLQMFWSYQRQEIEQANDFK------------------NHQ--LPLA----RIK------------KIMKADED 76 (231)
Q Consensus 33 ~~~~~~~l~~fW~~~~~eie~~~d~k------------------~~~--LPLA----RIK------------RIMKsDpD 76 (231)
.....+.|++-|..-+++-+...|.. .+. =+.. |-+ ||.+.. +
T Consensus 97 ~~~~~~~~k~~~~~i~~ky~~~~~~gd~idl~tG~iv~dnGh~~~l~~~~~~~~~~~r~~~vLrD~i~i~~~RlaRrg-G 175 (235)
T 2l5a_A 97 HKLADENMRKVWSNIISKYESIEEQGDLVDLKTGEIVEDNGHIKTLTANNSTKDKRTKYTSVLRDIIDISDEEDGDKG-G 175 (235)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCCCCSCCCSSSSCCCCCCCCCCCSCCCCCGGGCCSSTHHHHHHHHHHHTCCTTSCCT-T
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCCCcccCCCCceeeeCcHHHHhhcCCCCCccchhHHHHHHHhhcccHHHHhhcC-C
Confidence 34667889999999988887643210 000 0111 222 333333 7
Q ss_pred hhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcC
Q 026901 77 VRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRT 127 (231)
Q Consensus 77 V~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~ 127 (231)
|++||.++...+..++|.|++.+++.|..+|+..+||||+..||..|+++.
T Consensus 176 VkRIS~~iyeelr~vLe~fle~IirdAv~yaeHA~RKTVta~DV~~ALKr~ 226 (235)
T 2l5a_A 176 VKRISGLIYEEVRAVLKSFLESVIRDSVTYTEHAKRKTVTSLDVVYALKRQ 226 (235)
T ss_dssp CCTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHH
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHhc
Confidence 889999999999999999999999999999999999999999999999864
No 38
>3ksy_A SOS-1, SON of sevenless homolog 1; RAS, RAS activator, disease mutation, guanine-nucleotide releasing factor, signaling protein; 3.18A {Homo sapiens} PDB: 1xd4_A 1xdv_A 1q9c_A
Probab=97.75 E-value=5.7e-05 Score=77.57 Aligned_cols=90 Identities=13% Similarity=0.194 Sum_probs=75.0
Q ss_pred HHHHHHHHHHHh----hcCCCCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHH
Q 026901 43 FWSYQRQEIEQA----NDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKN 118 (231)
Q Consensus 43 fW~~~~~eie~~----~d~k~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~ 118 (231)
.|.- .++... ..-..+.||++||.|.+| .--..+|++.|++.++..+|++..++...|.+.|+..+++.|+..
T Consensus 84 ~~~~--~~~~~~~~~~~~~~~l~~pv~~~~~~l~-~~~~~r~~~~~~~y~~avleyl~~~~l~la~~~~~~~~~~~i~p~ 160 (1049)
T 3ksy_A 84 KWAI--ADAQSAIEKRKRRNPLSLPVEKIHPLLK-EVLGYKIDHQVSVYIVAVLEYISADILKLVGNYVRNIRHYEITKQ 160 (1049)
T ss_dssp HHHH--HHHHHHHTTCCCSSSCSSCHHHHHHHHH-HHHCSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCBCCHH
T ss_pred HHHH--HHHHHhhhcccccCCccccHHHHHHHhh-cccccccCCCCcchhHHHHHHHHHHHHHHHHHHHHHcCCceecCc
Confidence 6774 334332 233467899999999994 435569999999999999999999999999999999999999999
Q ss_pred HHHHHHhcCCccccccc
Q 026901 119 DIAAAITRTDIFDFLVD 135 (231)
Q Consensus 119 DIa~AI~~~d~fdFL~D 135 (231)
||..||.+++.++-|.+
T Consensus 161 ~~~~ai~~d~eL~~l~~ 177 (1049)
T 3ksy_A 161 DIKVAMCADKVLMDMFH 177 (1049)
T ss_dssp HHHHHHHHCSSHHHHCC
T ss_pred cccccccCCHHHHHHHh
Confidence 99999999998766653
No 39
>3vh5_A CENP-S; histone fold, chromosome segregation, DNA binding, nucleus, binding protein; 2.40A {Gallus gallus} PDB: 3vh6_A
Probab=97.71 E-value=4.3e-05 Score=62.92 Aligned_cols=59 Identities=12% Similarity=0.147 Sum_probs=52.9
Q ss_pred hccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCCcc-cccccc
Q 026901 78 RMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTDIF-DFLVDI 136 (231)
Q Consensus 78 ~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d~f-dFL~DI 136 (231)
..||.++...|+.+++.|+..|+..+...|++.|||||+.+||..++++++.+ .+|.+.
T Consensus 38 ~~vS~~ai~aL~El~~~~~e~ia~DLe~FAkHAGRKTI~~eDVkLa~Rrn~~L~~~L~~~ 97 (140)
T 3vh5_A 38 VLFSKQTVAAISEITFRQAENFARDLEMFARHAKRSTITSEDVKLLARRSNSLLKYITQK 97 (140)
T ss_dssp CEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHTTSHHHHHHHHHH
T ss_pred CCcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHhCHHHHHHHHHH
Confidence 35999999999999999999999999999999999999999999999999765 444443
No 40
>1bh9_B TAFII28; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_B*
Probab=97.59 E-value=0.00016 Score=55.09 Aligned_cols=77 Identities=17% Similarity=0.272 Sum_probs=65.5
Q ss_pred HHHHhhcCCCCCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcccHHHHHHHHhcC
Q 026901 50 EIEQANDFKNHQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENK-RRTLQKNDIAAAITRT 127 (231)
Q Consensus 50 eie~~~d~k~~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~k-RKTLq~~DIa~AI~~~ 127 (231)
++.....++...|+-+.|||||..--+. .+|.+...+++-.+.+||.+|+..|.++..+.+ +.-|+++||..|..+.
T Consensus 5 Q~~Rye~~Rrs~f~k~~vKrl~~~~~~~-~v~~~v~i~v~glaKvfVgelVE~A~~V~~~~~~~~Pl~P~HireA~rrl 82 (89)
T 1bh9_B 5 QLNRYEMYRRSAFPKAAIKRLIQSITGT-SVSQNVVIAMSGISKVFVGEVVEEALDVCEKWGEMPPLQPKHMREAVRRL 82 (89)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHcCC-CCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcHHHHHHHHHH
Confidence 3455567888999999999999886443 689999999999999999999999999998764 5589999999998753
No 41
>2nqb_D Histone H2B; nucleosome, NCP, chromatin, structural protein/DNA complex; 2.30A {Drosophila melanogaster} PDB: 2pyo_D*
Probab=97.42 E-value=0.00034 Score=56.48 Aligned_cols=60 Identities=22% Similarity=0.229 Sum_probs=54.4
Q ss_pred HHHHHHHhc-CcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHh
Q 026901 65 ARIKKIMKA-DEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 125 (231)
Q Consensus 65 ARIKRIMKs-DpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~ 125 (231)
.-|.||+|. .||. .||.+|..++.-..+.+.+.|+.+|...+..+||+||+.+||..||.
T Consensus 37 ~YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 97 (123)
T 2nqb_D 37 IYIYTVLKQVHPDT-GISSKAMSIMNSFVNDIFERIAAEASRLAHYNKRSTITSREIQTAVR 97 (123)
T ss_dssp HHHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHH
T ss_pred HHHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcCCHHHHHHHHH
Confidence 457888885 6775 58999999999999999999999999999999999999999999986
No 42
>4dra_E Centromere protein X; DNA binding complex, DNA damage repair, histone-fold, DNA BI protein; 2.41A {Homo sapiens} PDB: 4drb_J
Probab=97.42 E-value=0.0008 Score=51.03 Aligned_cols=67 Identities=12% Similarity=0.284 Sum_probs=59.8
Q ss_pred CCCCChHHHHHHHhcC--cchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHh
Q 026901 59 NHQLPLARIKKIMKAD--EDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 125 (231)
Q Consensus 59 ~~~LPLARIKRIMKsD--pDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~ 125 (231)
...||..-|.||++.. .+-.+||.||..++++-+++|+.+-+.||...|+..+...|..+||..+.-
T Consensus 10 ~~~i~~~li~ril~~~F~~~kTkIs~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~e~LEki~p 78 (84)
T 4dra_E 10 GSGFRKELVSRLLHLHFKDDKTKVSGDALQLMVELLKVFVVEAAVRGVRQAQAEDALRVDVDQLEKVLP 78 (84)
T ss_dssp -CCCCHHHHHHHHHTTCSSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhcCCCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 5679999999999984 466799999999999999999999999999999988888999999988653
No 43
>3b0b_C CENP-X, centromere protein X; histone fold, DNA binding, DNA, nucleus, DNA binding protein; 2.15A {Gallus gallus} PDB: 3vh5_D 3vh6_D
Probab=97.41 E-value=0.00071 Score=50.86 Aligned_cols=67 Identities=10% Similarity=0.265 Sum_probs=59.7
Q ss_pred CCCCChHHHHHHHhcC--cchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHh
Q 026901 59 NHQLPLARIKKIMKAD--EDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 125 (231)
Q Consensus 59 ~~~LPLARIKRIMKsD--pDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~ 125 (231)
+..||..-|.||++.. .+-.+|+++|..++++-+++||.+-+.||...|+..+...|..+||....-
T Consensus 6 ~~~~~~~lI~ril~~~f~~~ktrI~~dAl~l~aeyl~iFV~EAv~RA~~~a~~e~~~~le~~~LEki~p 74 (81)
T 3b0b_C 6 EGGFRKETVERLLRLHFRDGRTRVNGDALLLMAELLKVFVREAAARAARQAQAEDLEKVDIEHVEKVLP 74 (81)
T ss_dssp -CCCCHHHHHHHHHHHCCSTTCEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHhccCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeecHHHHHHHHH
Confidence 5679999999999983 456799999999999999999999999999999888889999999988653
No 44
>1tzy_B Histone H2B; histone-fold, tetramer-dimer-dimer, DNA binding protein; 1.90A {Gallus gallus} SCOP: a.22.1.1 PDB: 1eqz_B 1hq3_B 2aro_B 2hio_B 3c9k_B 3azg_D 3a6n_D 3an2_D 3av1_D 3av2_D 3ayw_D 3aze_D 3azf_D 3afa_D 3azh_D 3azi_D 3azj_D 3azk_D 3azl_D 3azm_D ...
Probab=97.39 E-value=0.00039 Score=56.36 Aligned_cols=59 Identities=22% Similarity=0.214 Sum_probs=54.3
Q ss_pred HHHHHHhc-CcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHh
Q 026901 66 RIKKIMKA-DEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 125 (231)
Q Consensus 66 RIKRIMKs-DpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~ 125 (231)
-|.||+|. .||. .||.+|..++.-..+.+.+.|+.+|...+..+||+||+.+||..||.
T Consensus 41 YIyKVLKQVhpd~-gISskAm~ImnSfvnDiferIA~EAs~La~~nkr~TitsreIqtAvr 100 (126)
T 1tzy_B 41 YVYKVLKQVHPDT-GISSKAMGIMNSFVNDIFERIAGEASRLAHYNKRSTITSREIQTAVR 100 (126)
T ss_dssp HHHHHHHHHCTTC-EECHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHH
T ss_pred HHHHHHHHhCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHH
Confidence 58888886 6775 49999999999999999999999999999999999999999999985
No 45
>2jss_A Chimera of histone H2B.1 and histone H2A.Z; histone/chaperone complex, intrinsically unfolded protein, chaperone/structural protein complex; NMR {Saccharomyces cerevisiae} SCOP: a.22.1.1 a.22.1.1
Probab=97.10 E-value=0.0011 Score=56.34 Aligned_cols=60 Identities=20% Similarity=0.231 Sum_probs=55.0
Q ss_pred HHHHHHHhc-CcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHh
Q 026901 65 ARIKKIMKA-DEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAIT 125 (231)
Q Consensus 65 ARIKRIMKs-DpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~ 125 (231)
..|+|++|. .||. .||.+|...+...+..+...|+.+|...+..++|+||+..||..||+
T Consensus 7 ~yi~kvLkqv~p~~-~iS~~Am~~m~s~v~di~~rIa~eA~~L~~~~~r~Tit~~eIq~Avr 67 (192)
T 2jss_A 7 SYIYKVLKQTHPDT-GISQKSMSILNSFVNDIFERIATEASKLAAYNKKSTISAREIQTAVR 67 (192)
T ss_dssp HHHHHHHHHHCSSC-CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCHHHHHHHHH
T ss_pred HHHHHHHcccCCCC-CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHH
Confidence 358899986 5775 49999999999999999999999999999999999999999999996
No 46
>2l5a_A Histone H3-like centromeric protein CSE4, protein histone H4; A single chain of CSE4+SCM3+H4, fusion protein; NMR {Saccharomyces cerevisiae}
Probab=96.47 E-value=0.0052 Score=54.33 Aligned_cols=70 Identities=23% Similarity=0.243 Sum_probs=58.4
Q ss_pred CCCCChHH-HHHHHhcCc---chhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCC
Q 026901 59 NHQLPLAR-IKKIMKADE---DVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 128 (231)
Q Consensus 59 ~~~LPLAR-IKRIMKsDp---DV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d 128 (231)
-..||..| |+.|++.-. +--++.++|+.++..|+|.|+-.|-..++.+|-+.||-||..+||..|-.-..
T Consensus 12 I~KlPFqRLVREIaq~~~~~~~~lRfqs~Al~ALQEAaEayLV~LFEd~nLcaiHAkRVTim~kDiqLarrirg 85 (235)
T 2l5a_A 12 ISKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHAKRITIMKKDMQLARRIRG 85 (235)
T ss_dssp CSCCHHHHHHHHHHHTSCGGGTTCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSTTTSGGGTTHHHHHHTSSC
T ss_pred ccCccHHHHHHHHHHHhccCCccceecHHHHHHHHHHHHHHHHHHHhhhHHHHhcccccccchhhHHHHHHHhh
Confidence 35688888 566766532 13479999999999999999999999999999999999999999999875443
No 47
>1h3o_B Transcription initiation factor TFIID 20/15 kDa subunits; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=95.64 E-value=0.05 Score=40.37 Aligned_cols=67 Identities=15% Similarity=0.289 Sum_probs=58.7
Q ss_pred CCCChHHHHHHHhc-CcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcC
Q 026901 60 HQLPLARIKKIMKA-DEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDIAAAITRT 127 (231)
Q Consensus 60 ~~LPLARIKRIMKs-DpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~ 127 (231)
..|.-.++..++|. ||. ..+..++-.++.+.++.||...+..|-..|+++|-.||..+||...+++.
T Consensus 4 ~vl~k~~L~~Lv~~idp~-~~ld~~vee~ll~lADdFV~~V~~~ac~lAKhR~s~~le~kDvql~Ler~ 71 (76)
T 1h3o_B 4 MVLTKKKLQDLVREVDPN-EQLDEDVEEMLLQIADDFIESVVTAACQLARHRKSSTLEVKDVQLHLERQ 71 (76)
T ss_dssp CSSCHHHHHHHHHHHCSS-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCEECHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHhcCCC-CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHhh
Confidence 34677788888877 554 57899999999999999999999999999999999999999999888764
No 48
>3v9r_B MHF2, uncharacterized protein YDL160C-A; histone fold, fanconi anemia, DNA repair, DNA BI protein; 2.40A {Saccharomyces cerevisiae}
Probab=95.48 E-value=0.046 Score=41.79 Aligned_cols=63 Identities=21% Similarity=0.276 Sum_probs=48.6
Q ss_pred CChHHHHHHHhcC--cchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcC-------CCcccHHHHHHHH
Q 026901 62 LPLARIKKIMKAD--EDVRMISAEAPILFAKACELFILELTIRSWLHAEENK-------RRTLQKNDIAAAI 124 (231)
Q Consensus 62 LPLARIKRIMKsD--pDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~k-------RKTLq~~DIa~AI 124 (231)
+|..-|-||++.. .+-.+||+||..+++|-+++||.+-+.||+...+..+ ...|.-.|+.+..
T Consensus 2 ip~~llaRIL~~~F~~~kTrIt~da~~lv~kY~diFVrEAv~Rs~e~ke~~~~~~~~~~d~~LeveDLEkia 73 (88)
T 3v9r_B 2 LSKEALIKILSQNEGGNDMKIADEVVPMIQKYLDIFIDEAVLRSLQSHKDINGERGDKSPLELSHQDLERIV 73 (88)
T ss_dssp CCSHHHHHHHTTTSCSSCCEECTTTHHHHHHHHHHHHHHHHHHHHHHHHCC-----------CCHHHHHHHH
T ss_pred CCHHHHHHHHHHHhCCCCceecHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCCCCCeeehHHHHHHH
Confidence 6788889999873 4557899999999999999999999999987665422 2467777776653
No 49
>2ly8_A Budding yeast chaperone SCM3; centromere protein, CENH3 variants, partially unfolded; NMR {Saccharomyces cerevisiae}
Probab=81.18 E-value=1.7 Score=34.67 Aligned_cols=75 Identities=17% Similarity=0.278 Sum_probs=53.2
Q ss_pred CCCChHHH-HHHHhcC-c--chhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHc---CCCccc---HHHHHHHHhcCCc
Q 026901 60 HQLPLARI-KKIMKAD-E--DVRMISAEAPILFAKACELFILELTIRSWLHAEEN---KRRTLQ---KNDIAAAITRTDI 129 (231)
Q Consensus 60 ~~LPLARI-KRIMKsD-p--DV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~---kRKTLq---~~DIa~AI~~~d~ 129 (231)
..||-.|+ |.|.+.- . ..-+.+++|+.++..|+|.|+-.|-..++.+|-+. +-|.|+ |+.+..+++
T Consensus 3 ~klPF~RLVREI~~~~~~~~~~lRfq~~Al~ALQeAsEayLV~lFEd~nlcaiHA~~gGvkRIS~~iy~e~r~vl~---- 78 (121)
T 2ly8_A 3 SKIPFARLVKEVTDEFTTKDQDLRWQSMAIMALQEASEAYLVGLLEHTNLLALHLVPRGSKRISGLIYEEVRAVLK---- 78 (121)
T ss_dssp SCCHHHHHHHHHHHHHTTCCSSCCBCHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCSSCCSSCHHHHHHHHHH----
T ss_pred CccchHHHHHHHHHHhcCCCCCccccHHHHHHHHHHHHHHHHHHHHHHhHHHHcCCccCccchhHHHHHHHHHHHH----
Confidence 35788874 4566531 1 23479999999999999999999999999888764 334554 566666664
Q ss_pred cccccccCCC
Q 026901 130 FDFLVDIVPR 139 (231)
Q Consensus 130 fdFL~DIVP~ 139 (231)
+||.+|+-.
T Consensus 79 -~~l~~i~rd 87 (121)
T 2ly8_A 79 -SFLESVIRD 87 (121)
T ss_dssp -HHHHHHHHH
T ss_pred -HHHHHHHHH
Confidence 577766543
No 50
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=78.81 E-value=1.1 Score=32.46 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=33.9
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 85 PILFAKACELF----ILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 85 ~vllAKAtElF----I~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
...|++.|+-| |..|+.+|...|-+.++..|+.+|+..|+++
T Consensus 25 l~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~~~i~~~df~~Al~~ 70 (88)
T 3vlf_B 25 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 70 (88)
T ss_dssp HHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHH
Confidence 45566666666 7788888888888888899999999999975
No 51
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=74.58 E-value=3.9 Score=28.49 Aligned_cols=42 Identities=12% Similarity=0.093 Sum_probs=35.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 85 PILFAKACELF----ILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 85 ~vllAKAtElF----I~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
...+++.|+-| |..|+.+|...|-+.++..|+.+|+..|+.+
T Consensus 27 l~~la~~t~G~SGADi~~l~~eA~~~a~~~~~~~i~~~d~~~Al~~ 72 (78)
T 3kw6_A 27 LRKIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 72 (78)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 55666677766 7788889988898899999999999999875
No 52
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=69.64 E-value=6.2 Score=27.90 Aligned_cols=32 Identities=19% Similarity=0.250 Sum_probs=25.9
Q ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHhcC
Q 026901 96 ILELTIRSWLHAEENKRRTLQKNDIAAAITRT 127 (231)
Q Consensus 96 I~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~ 127 (231)
|..|+.+|...|-+.++..|+.+|+..|+.+.
T Consensus 37 i~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v 68 (82)
T 2dzn_B 37 IAAIMQEAGLRAVRKNRYVILQSDLEEAYATQ 68 (82)
T ss_dssp HHHHHHHHHHHHHHTTCSEECHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 44566777777888888999999999999764
No 53
>1wwi_A Hypothetical protein TTHA1479; structural genomics, unknown function, riken structural genomics/proteomics initiative, RSGI; 1.58A {Thermus thermophilus HB8} SCOP: a.22.1.4 PDB: 1wws_A
Probab=67.59 E-value=8.5 Score=31.76 Aligned_cols=59 Identities=10% Similarity=0.128 Sum_probs=45.0
Q ss_pred CCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHH
Q 026901 61 QLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 120 (231)
Q Consensus 61 ~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DI 120 (231)
.++.++++|+++..-+....-.++-. +...++.=+.+|..-|...|+.++|..|...||
T Consensus 2 vm~~~~~e~lFR~aa~LdvdK~d~~r-~~d~V~~Kl~DLl~va~~~Ak~n~RdvI~~~DL 60 (148)
T 1wwi_A 2 LMKVAEFERLFRQAAGLDVDKNDLKR-VSDFLRNKLYDLLAVAERNAKYNGRDLIFEPDL 60 (148)
T ss_dssp CSCHHHHHHHHHHHHCCCCCGGGHHH-HHHHHHHHHHHHHHHHHHHHHHTTCSEECGGGS
T ss_pred cCCHHHHHHHHHHHhccCCcHHHHHH-HHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 36889999999997666544444444 445555557788899999999999999998875
No 54
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=66.99 E-value=6.9 Score=28.34 Aligned_cols=40 Identities=13% Similarity=0.137 Sum_probs=29.9
Q ss_pred HHHHHHHHH----HHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 87 LFAKACELF----ILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 87 llAKAtElF----I~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
.|++.|+-| |..|+.+|...|-+..++.|+.+|+..|+++
T Consensus 37 ~LA~~T~G~SGADL~~l~~eAa~~alr~~~~~I~~~df~~Al~~ 80 (86)
T 2krk_A 37 KIAELMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAK 80 (86)
T ss_dssp HHHHTCSSCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred HHHHHcCCCCHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 344444433 5567778888888888899999999999875
No 55
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=66.37 E-value=18 Score=30.52 Aligned_cols=64 Identities=13% Similarity=0.174 Sum_probs=49.5
Q ss_pred hHHHHHHHhcCc----chhccCchHHHHHHHHHH------HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcC
Q 026901 64 LARIKKIMKADE----DVRMISAEAPILFAKACE------LFILELTIRSWLHAEENKRRTLQKNDIAAAITRT 127 (231)
Q Consensus 64 LARIKRIMKsDp----DV~~ISaEA~vllAKAtE------lFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~ 127 (231)
..-++.|++.-- .-..++.++...+++.+. ..+..++..|+..|...++.+|+.+||..++...
T Consensus 203 ~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~ 276 (387)
T 2v1u_A 203 APQLRDILETRAEEAFNPGVLDPDVVPLCAALAAREHGDARRALDLLRVAGEIAERRREERVRREHVYSARAEI 276 (387)
T ss_dssp HHHHHHHHHHHHHHHBCTTTBCSSHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHH
Confidence 455666665421 123688899998888887 6777889999999988888999999999998765
No 56
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=65.61 E-value=20 Score=30.60 Aligned_cols=65 Identities=17% Similarity=0.211 Sum_probs=48.1
Q ss_pred CChHHHHHHHhcC--cchhccCchHHHHHHHHHH----HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 62 LPLARIKKIMKAD--EDVRMISAEAPILFAKACE----LFILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 62 LPLARIKRIMKsD--pDV~~ISaEA~vllAKAtE----lFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
+...-++.|++.- ..-..++.++...+++.+. ..+..|..+|...|..++++.|+.+||..++..
T Consensus 259 ~~~~e~~~il~~~~~~~~~~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~It~~~v~~a~~~ 329 (368)
T 3uk6_A 259 YSEKDTKQILRIRCEEEDVEMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTEVQVDDIKRVYSL 329 (368)
T ss_dssp CCHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHHH
Confidence 3455666666631 1112488889888888887 356677888888888889999999999999875
No 57
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=64.71 E-value=24 Score=29.74 Aligned_cols=48 Identities=15% Similarity=-0.005 Sum_probs=36.7
Q ss_pred ccCchHHHHHHHHHH-------HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 79 MISAEAPILFAKACE-------LFILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 79 ~ISaEA~vllAKAtE-------lFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
.+|.++..++...+. .-+..+...|...|..++|.+|+.+||..++..
T Consensus 267 ~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~~ 321 (350)
T 1g8p_A 267 EAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVATM 321 (350)
T ss_dssp BCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHH
Confidence 578888777766654 235567777788888889999999999988753
No 58
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=64.29 E-value=4.8 Score=37.59 Aligned_cols=42 Identities=14% Similarity=0.120 Sum_probs=34.7
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 85 PILFAKACELF----ILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 85 ~vllAKAtElF----I~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
...+++.|+-| |..|+.+|...|-+++|..|+.+|+..|+.+
T Consensus 368 l~~lA~~t~G~sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~ 413 (428)
T 4b4t_K 368 LDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYAT 413 (428)
T ss_dssp HHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHH
Confidence 45666766654 7889999999999999999999999999864
No 59
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=62.86 E-value=18 Score=34.37 Aligned_cols=51 Identities=10% Similarity=0.040 Sum_probs=39.8
Q ss_pred hccCchHHHHHHHHH-------------HHHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCC
Q 026901 78 RMISAEAPILFAKAC-------------ELFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 128 (231)
Q Consensus 78 ~~ISaEA~vllAKAt-------------ElFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d 128 (231)
..++.+|...+.+.. ..-+..|.+.|...|...++..|+.+||..|+....
T Consensus 313 ~~ls~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~~~ 376 (604)
T 3k1j_A 313 PHFTKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKMAK 376 (604)
T ss_dssp CCBBHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHTC
T ss_pred ccCCHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHhhh
Confidence 357788877766533 455667888888889889999999999999997543
No 60
>1h3o_A Transcription initiation factor TFIID 135 kDa subunit; transcription/TBP-associated factors, TBP-associated factors; 2.3A {Homo sapiens} SCOP: a.22.1.3
Probab=62.31 E-value=11 Score=27.76 Aligned_cols=43 Identities=16% Similarity=0.131 Sum_probs=34.5
Q ss_pred HHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 026901 65 ARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAE 108 (231)
Q Consensus 65 ARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~ 108 (231)
.||..||+.- ++..++.|+..+++-|||.=+..|...-...|+
T Consensus 10 kri~~I~~k~-gl~~~~~dv~~~iS~a~qeRLr~llekl~~~a~ 52 (75)
T 1h3o_A 10 RRILEIGKKH-GITELHPDVVSYVSHATQQRLQNLVEKISETAQ 52 (75)
T ss_dssp HHHHHHHHTT-TCCEECTTHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhc-CCCcCChhHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence 5888899875 889999999999999999988877776655554
No 61
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=62.30 E-value=6.6 Score=27.54 Aligned_cols=32 Identities=19% Similarity=0.143 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHcCCCcccHHHHHHHHhcC
Q 026901 96 ILELTIRSWLHAEENKRRTLQKNDIAAAITRT 127 (231)
Q Consensus 96 I~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~ 127 (231)
|..|+.+|...|-++.+..|+.+|+..|+.+.
T Consensus 40 i~~l~~eA~~~a~~~~~~~i~~~df~~Al~~~ 71 (83)
T 3aji_B 40 INSICQESGMLAVRENRYIVLAKDFEKAYKTV 71 (83)
T ss_dssp HHHHHHHHHHGGGTSCCSSBCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccCCcCHHHHHHHHHHH
Confidence 45677778788888888999999999998763
No 62
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=53.33 E-value=34 Score=28.68 Aligned_cols=66 Identities=15% Similarity=0.086 Sum_probs=47.2
Q ss_pred ChHHHHHHHhcCc----chhccCchHHHHHHHHHH------HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcCC
Q 026901 63 PLARIKKIMKADE----DVRMISAEAPILFAKACE------LFILELTIRSWLHAEENKRRTLQKNDIAAAITRTD 128 (231)
Q Consensus 63 PLARIKRIMKsDp----DV~~ISaEA~vllAKAtE------lFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~d 128 (231)
...-++.|++.-- ....++.++...+.+.+. ..+..++..++..+...++.+|+.+||..++....
T Consensus 198 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~l~~~~~~~~G~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~ 273 (386)
T 2qby_A 198 NAEELEDILTKRAQMAFKPGVLPDNVIKLCAALAAREHGDARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIE 273 (386)
T ss_dssp CHHHHHHHHHHHHHHHBCSSCSCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHh
Confidence 3455666665411 113577888888877776 34567888898888888888999999999887653
No 63
>1ldd_A APC2WHB, anaphase promoting complex; ubiquitin, ligase, ubiquitination, ring finger, winged-helix; 2.00A {Saccharomyces cerevisiae} SCOP: a.4.5.34
Probab=51.37 E-value=12 Score=27.20 Aligned_cols=53 Identities=15% Similarity=0.157 Sum_probs=33.7
Q ss_pred HHHHHHHHHHHHHHHHHhhcCCCCCCChHHHHHHHhcC----cchhccCchHHHHHHHHHHHHHHHHHH
Q 026901 37 QQQLQMFWSYQRQEIEQANDFKNHQLPLARIKKIMKAD----EDVRMISAEAPILFAKACELFILELTI 101 (231)
Q Consensus 37 ~~~l~~fW~~~~~eie~~~d~k~~~LPLARIKRIMKsD----pDV~~ISaEA~vllAKAtElFI~~Lt~ 101 (231)
...++-||.-..-=+.+. -.||+.||..++|.- +....||-+- ++.|+..+++
T Consensus 3 ee~~~v~w~yI~GMLtN~-----~slpl~RIh~mLkmf~~~~~~~~~it~~e-------L~~fL~~~v~ 59 (74)
T 1ldd_A 3 ELTLQRSLPFIEGMLTNL-----GAMKLHKIHSFLKITVPKDWGYNRITLQQ-------LEGYLNTLAD 59 (74)
T ss_dssp HHHHHHHHHHHHHHHHHH-----CSEEHHHHHHHHHHHSCGGGCCTTCCHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcC-----CCCCHHHHHHHHHHhCCCCCCCCcCCHHH-------HHHHHHHHHh
Confidence 456888999864444443 459999999999983 3334444432 3455555554
No 64
>1r4v_A Hypothetical protein AQ_328; structural genomics, all-alpha, histon fold, PSI, protein ST initiative, midwest center for structural genomics; HET: MSE; 1.90A {Aquifex aeolicus} SCOP: a.22.1.4
Probab=50.39 E-value=11 Score=31.69 Aligned_cols=60 Identities=13% Similarity=0.150 Sum_probs=46.5
Q ss_pred CCCChHHHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccHHHH
Q 026901 60 HQLPLARIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWLHAEENKRRTLQKNDI 120 (231)
Q Consensus 60 ~~LPLARIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~~A~~~kRKTLq~~DI 120 (231)
..++.++++||++..-++... ++-.--+...++.=+.+|..-|...|+.++|..|...||
T Consensus 25 ~vmg~~kferlFR~aagLDvd-K~d~kr~~d~V~~Kl~DLl~va~~~Ak~NgRDvI~~~DL 84 (171)
T 1r4v_A 25 RPKGFDKLDHYFRTELDIDLT-DETIELLLNSVKAAFGKLFYGAEQRARWNGRDFIALADL 84 (171)
T ss_dssp SCTTHHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHHHHHTTTTHHHHHHHTTCSEECGGGS
T ss_pred hcCChHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCeeccccC
Confidence 378999999999997666444 444444555556667788889999999999999998875
No 65
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=42.68 E-value=36 Score=27.66 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=32.3
Q ss_pred cCchH-HHHHHHHHHHH----HHHHHHHHHHHHHHcCCCcccHHHHHHHH
Q 026901 80 ISAEA-PILFAKACELF----ILELTIRSWLHAEENKRRTLQKNDIAAAI 124 (231)
Q Consensus 80 ISaEA-~vllAKAtElF----I~~Lt~~A~~~A~~~kRKTLq~~DIa~AI 124 (231)
++.++ ...+++.++=| +..++.+|...|...++++|+.+|+..|+
T Consensus 204 ~~~~~~~~~la~~~~G~~~~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 204 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 34333 55666666543 45677788888888888899999999886
No 66
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=41.53 E-value=29 Score=28.51 Aligned_cols=42 Identities=17% Similarity=0.110 Sum_probs=32.4
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 85 PILFAKACEL----FILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 85 ~vllAKAtEl----FI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
...+++.++- -|..|+.+|...|...++.+|+.+||..|+.+
T Consensus 212 ~~~l~~~~~g~~~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~ 257 (285)
T 3h4m_A 212 LEEIAKMTEGCVGAELKAICTEAGMNAIRELRDYVTMDDFRKAVEK 257 (285)
T ss_dssp HHHHHHHCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHH
Confidence 4444444443 46778888988898899999999999999875
No 67
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=40.64 E-value=74 Score=26.86 Aligned_cols=64 Identities=16% Similarity=0.202 Sum_probs=46.9
Q ss_pred hHHHHHHHhcCcc----hhccCchHHHHHHHHH---------H---HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcC
Q 026901 64 LARIKKIMKADED----VRMISAEAPILFAKAC---------E---LFILELTIRSWLHAEENKRRTLQKNDIAAAITRT 127 (231)
Q Consensus 64 LARIKRIMKsDpD----V~~ISaEA~vllAKAt---------E---lFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~ 127 (231)
..-++.|++.--. -..++.++...+.+.+ . .++..++..|+..|...++.+|+.+||..++...
T Consensus 195 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 195 KDQIFDILLDRAKAGLAEGSYSEDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHHHHHHHHHHBCTTSSCHHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 3556666654211 1257888888888877 2 4577888899999988888999999999988764
No 68
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=39.42 E-value=67 Score=29.11 Aligned_cols=64 Identities=19% Similarity=0.189 Sum_probs=46.5
Q ss_pred ChHHHHHHHhcC--cchhccCchHHHHHHHHH-H---HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 63 PLARIKKIMKAD--EDVRMISAEAPILFAKAC-E---LFILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 63 PLARIKRIMKsD--pDV~~ISaEA~vllAKAt-E---lFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
....+.+|++.- .+-..++.++..++++.+ + .....|...|...|..+++.+|+.+||..++.-
T Consensus 367 ~~~e~~~iL~~~~~~~~~~~~~~~~~~i~~~a~~g~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~ 436 (456)
T 2c9o_A 367 TPQEMKQIIKIRAQTEGINISEEALNHLGEIGTKTTLRYSVQLLTPANLLAKINGKDSIEKEHVEEISEL 436 (456)
T ss_dssp CHHHHHHHHHHHHHHHTCCBCHHHHHHHHHHHHHSCHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHccCCCHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHH
Confidence 445667777542 111247888888888776 3 356677788888888899999999999999754
No 69
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=39.14 E-value=42 Score=27.85 Aligned_cols=45 Identities=24% Similarity=0.301 Sum_probs=31.5
Q ss_pred cCchH-HHHHHHHHHHH----HHHHHHHHHHHHHHcCCCcccHHHHHHHH
Q 026901 80 ISAEA-PILFAKACELF----ILELTIRSWLHAEENKRRTLQKNDIAAAI 124 (231)
Q Consensus 80 ISaEA-~vllAKAtElF----I~~Lt~~A~~~A~~~kRKTLq~~DIa~AI 124 (231)
++.++ ...++..++=| |..++.+|...|...+++.|+.+||..|+
T Consensus 228 ~~~~~~~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 228 LAEDVDLALLAKRTPGFVGADLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp BCTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred CCcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 34333 55566655533 45667788888877788899999999886
No 70
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=38.83 E-value=34 Score=27.83 Aligned_cols=42 Identities=14% Similarity=0.165 Sum_probs=31.5
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 85 PILFAKACEL----FILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 85 ~vllAKAtEl----FI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
..++++.++- -|..++.+|...|...+++.|+.+|+..|+..
T Consensus 206 ~~~la~~~~G~~~~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~ 251 (257)
T 1lv7_A 206 AAIIARGTPGFSGADLANLVNEAALFAARGNKRVVSMVEFEKAKDK 251 (257)
T ss_dssp HHHHHHTCTTCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHcCCCCHHHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence 4455554443 35667788888888888899999999999875
No 71
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=36.30 E-value=1.1e+02 Score=25.90 Aligned_cols=63 Identities=16% Similarity=0.054 Sum_probs=42.4
Q ss_pred ChHHHHHHHhcC----cchhccCchHHHHHHHHHH------HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhcC
Q 026901 63 PLARIKKIMKAD----EDVRMISAEAPILFAKACE------LFILELTIRSWLHAEENKRRTLQKNDIAAAITRT 127 (231)
Q Consensus 63 PLARIKRIMKsD----pDV~~ISaEA~vllAKAtE------lFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~~ 127 (231)
...-++.|++.- -.-..++.++...+++.+. ..+..+...|+..|. ++++|+.+||..++.+.
T Consensus 198 ~~~~~~~il~~~~~~~~~~~~~~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~ 270 (384)
T 2qby_B 198 DAEQLKFILSKYAEYGLIKGTYDDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDY 270 (384)
T ss_dssp CHHHHHHHHHHHHHHTSCTTSCCSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhhcccCCcCHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHH
Confidence 345556666541 0113577888888887776 235567777877776 66789999999988765
No 72
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=34.98 E-value=36 Score=31.64 Aligned_cols=42 Identities=12% Similarity=0.066 Sum_probs=34.0
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 85 PILFAKACEL----FILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 85 ~vllAKAtEl----FI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
...+++.|+- =|..|+.+|...|-+.+|..|+.+|+..|+.+
T Consensus 343 l~~lA~~t~G~SGADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~ 388 (405)
T 4b4t_J 343 LRKVAEKMNGCSGADVKGVCTEAGMYALRERRIHVTQEDFELAVGK 388 (405)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 4556666653 36788999999998899999999999999864
No 73
>1bh9_A TAFII18; histone fold, tata binding protein, transcription regulation complex; HET: PMB; 2.60A {Homo sapiens} SCOP: a.22.1.3 PDB: 1bh8_A*
Probab=33.86 E-value=76 Score=20.77 Aligned_cols=40 Identities=18% Similarity=0.127 Sum_probs=35.0
Q ss_pred HHHHHHhcCcchhccCchHHHHHHHHHHHHHHHHHHHHHH
Q 026901 66 RIKKIMKADEDVRMISAEAPILFAKACELFILELTIRSWL 105 (231)
Q Consensus 66 RIKRIMKsDpDV~~ISaEA~vllAKAtElFI~~Lt~~A~~ 105 (231)
-|+.+|=.-.|+..-..|+..++-..+-.||.+|+.+|.+
T Consensus 5 ei~~mMy~fGD~~~P~~ETv~llEeiV~~~i~~l~~~A~~ 44 (45)
T 1bh9_A 5 ELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMS 44 (45)
T ss_dssp HHHHHHHHTTSCSSCCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4777888878888889999999999999999999998864
No 74
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=33.75 E-value=39 Score=31.92 Aligned_cols=42 Identities=17% Similarity=0.137 Sum_probs=34.0
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 85 PILFAKACELF----ILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 85 ~vllAKAtElF----I~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
...|++.|+-| |..|+.+|...|-+.+|..|+.+|+..|+++
T Consensus 377 l~~LA~~T~GfSGADI~~l~~eA~~~Air~~~~~It~eDf~~Al~r 422 (437)
T 4b4t_I 377 LETLVTTKDDLSGADIQAMCTEAGLLALRERRMQVTAEDFKQAKER 422 (437)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 45566666533 6788999999998999999999999999864
No 75
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.65 E-value=42 Score=31.35 Aligned_cols=42 Identities=14% Similarity=0.109 Sum_probs=33.2
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 85 PILFAKACEL----FILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 85 ~vllAKAtEl----FI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
...+++.|+- =|..|+.+|...|-+.+|..|+.+|+..|+.+
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~ 421 (437)
T 4b4t_L 376 FEAAVKMSDGFNGADIRNCATEAGFFAIRDDRDHINPDDLMKAVRK 421 (437)
T ss_dssp HHHHHHTCCSCCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 4455565553 36788889999998899999999999999875
No 76
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=32.63 E-value=39 Score=31.53 Aligned_cols=42 Identities=14% Similarity=0.192 Sum_probs=33.4
Q ss_pred HHHHHHHHHH----HHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 85 PILFAKACEL----FILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 85 ~vllAKAtEl----FI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
...+++.|+- =|..|+.+|...|-+++++.|+.+|+..|+++
T Consensus 376 l~~lA~~t~G~sGADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~ 421 (434)
T 4b4t_M 376 WQELARSTDEFNGAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISE 421 (434)
T ss_dssp HHHHHHHCSSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHS
T ss_pred HHHHHHhCCCCCHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 4455666553 36788889988898889999999999999975
No 77
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.53 E-value=39 Score=32.15 Aligned_cols=42 Identities=14% Similarity=0.238 Sum_probs=34.3
Q ss_pred HHHHHHHHHHH----HHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 85 PILFAKACELF----ILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 85 ~vllAKAtElF----I~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
...|++.|+-| |..|+.+|...|-+.+|+.|+.+|+..|+.+
T Consensus 404 l~~LA~~T~GfSGADI~~l~~eAa~~Air~~~~~it~~Df~~Al~k 449 (467)
T 4b4t_H 404 WELISRLCPNSTGAELRSVCTEAGMFAIRARRKVATEKDFLKAVDK 449 (467)
T ss_dssp HHHHHHHCCSCCHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHH
T ss_pred HHHHHHHCCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHH
Confidence 45566766644 6788999999998889999999999999865
No 78
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=29.62 E-value=98 Score=26.41 Aligned_cols=67 Identities=12% Similarity=0.100 Sum_probs=48.4
Q ss_pred CCChHHHHHHHhcC-----cchhccCchHHHHHHHHHH---------HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 61 QLPLARIKKIMKAD-----EDVRMISAEAPILFAKACE---------LFILELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 61 ~LPLARIKRIMKsD-----pDV~~ISaEA~vllAKAtE---------lFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
.|...-++.|++.- .+ ..++.++...+.+.|. .++..|+..++..+...++.+|+.+|+..++..
T Consensus 214 ~l~~~e~~~ll~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~G~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~ 292 (412)
T 1w5s_A 214 AYKSRELYTILEQRAELGLRD-TVWEPRHLELISDVYGEDKGGDGSARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSE 292 (412)
T ss_dssp CCCHHHHHHHHHHHHHHHBCT-TSCCHHHHHHHHHHHCGGGTSCCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCC-CCCChHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 34445667776421 11 2477788888888887 478888888888888888889999999988876
Q ss_pred CC
Q 026901 127 TD 128 (231)
Q Consensus 127 ~d 128 (231)
..
T Consensus 293 ~~ 294 (412)
T 1w5s_A 293 NE 294 (412)
T ss_dssp C-
T ss_pred Hh
Confidence 43
No 79
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=27.42 E-value=92 Score=24.04 Aligned_cols=46 Identities=7% Similarity=0.026 Sum_probs=28.7
Q ss_pred ccCchHHHHHHHHHH---HHHHHHHHHHHHHHHHcCCCcccHHHHHHHHh
Q 026901 79 MISAEAPILFAKACE---LFILELTIRSWLHAEENKRRTLQKNDIAAAIT 125 (231)
Q Consensus 79 ~ISaEA~vllAKAtE---lFI~~Lt~~A~~~A~~~kRKTLq~~DIa~AI~ 125 (231)
.++.++...+.+.+. .-+..+..++...+...+ ++|+.+||..++.
T Consensus 193 ~~~~~~~~~l~~~~~g~~r~l~~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 193 QLPEDVGRFLLNRMARDLRTLFDVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp CCCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred CCCHHHHHHHHHHccCCHHHHHHHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 366777777766655 223344445555554444 5699999999875
No 80
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=25.24 E-value=2.7e+02 Score=23.29 Aligned_cols=29 Identities=21% Similarity=0.045 Sum_probs=22.6
Q ss_pred HHHHHHHHHHHHcCCCcccHHHHHHHHhc
Q 026901 98 ELTIRSWLHAEENKRRTLQKNDIAAAITR 126 (231)
Q Consensus 98 ~Lt~~A~~~A~~~kRKTLq~~DIa~AI~~ 126 (231)
.|.+.|...|.-++|..|+.+||..++..
T Consensus 268 ~ll~~a~a~A~l~g~~~v~~~dv~~~~~~ 296 (331)
T 2r44_A 268 NLNRVAKAMAFFNNRDYVLPEDIKEVAYD 296 (331)
T ss_dssp HHHHHHHHHHHHTTCSBCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCHHHHHHHHHH
Confidence 45556666777789999999999998753
No 81
>2l6f_A Focal adhesion kinase 1, linker1, paxillin, linke paxillin; FAT, FAK, LD2, LD4, fusion protein, chimera protei transferase,cell adhesion; NMR {Gallus gallus} PDB: 2l6g_A 2l6h_A
Probab=28.43 E-value=18 Score=31.49 Aligned_cols=15 Identities=60% Similarity=0.979 Sum_probs=6.5
Q ss_pred CCCCCCCCCCCCCCC
Q 026901 212 DDGSYGSGGSGGPAN 226 (231)
Q Consensus 212 ~~~~~~~g~~~~~~~ 226 (231)
-..++++||++|.|.
T Consensus 179 ~~~~~~~~~~~~~~~ 193 (215)
T 2l6f_A 179 GSGSGGSGGSGGSGG 193 (215)
Confidence 334444444444443
No 82
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=20.60 E-value=55 Score=31.28 Aligned_cols=67 Identities=16% Similarity=0.124 Sum_probs=48.1
Q ss_pred CCCCChHHHHHHHhcCcch--hccCchHHHHHHHHHHH------------------HHHHHHHHHHHHHHHcCCCcccHH
Q 026901 59 NHQLPLARIKKIMKADEDV--RMISAEAPILFAKACEL------------------FILELTIRSWLHAEENKRRTLQKN 118 (231)
Q Consensus 59 ~~~LPLARIKRIMKsDpDV--~~ISaEA~vllAKAtEl------------------FI~~Lt~~A~~~A~~~kRKTLq~~ 118 (231)
...++...+++++...... ..+|.+|..++...... -+..|.+.|..+|.-+.|.+|+.+
T Consensus 499 ~~~l~~~~l~~~i~~ar~~~~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~ 578 (595)
T 3f9v_A 499 KNIIDIDTLRKYIAYARKYVTPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTRE 578 (595)
T ss_dssp SSTTCCTTTHHHHHHHHHHHCCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHH
T ss_pred ccCCCHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHH
Confidence 4567777788877543211 15778877777665321 245778888888999999999999
Q ss_pred HHHHHHh
Q 026901 119 DIAAAIT 125 (231)
Q Consensus 119 DIa~AI~ 125 (231)
|+..|+.
T Consensus 579 dv~~Ai~ 585 (595)
T 3f9v_A 579 DAERAIN 585 (595)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999985
Done!