Your job contains 1 sequence.
>026902
MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS
EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA
EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY
PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK
The BLAST search returned 2 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 026902
(231 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2007417 - symbol:AT1G06960 species:3702 "Arabi... 754 9.3e-75 1
TAIR|locus:2065742 - symbol:U2B'' "U2 small nuclear ribon... 753 1.2e-74 1
UNIPROTKB|B8AM21 - symbol:OsI_11177 "U2 small nuclear rib... 692 3.5e-68 1
UNIPROTKB|Q10MR0 - symbol:LOC_Os03g18720 "U2 small nuclea... 689 7.2e-68 1
TAIR|locus:2061976 - symbol:U1A "spliceosomal protein U1A... 301 2.9e-54 2
UNIPROTKB|A2Y0J7 - symbol:OsI_18512 "U1 small nuclear rib... 533 2.4e-51 1
UNIPROTKB|Q0DKM4 - symbol:LOC_Os05g06280 "U1 small nuclea... 533 2.4e-51 1
FB|FBgn0003449 - symbol:snf "sans fille" species:7227 "Dr... 277 4.7e-50 2
UNIPROTKB|J9NSX4 - symbol:LOC100683259 "Uncharacterized p... 277 1.1e-48 2
MGI|MGI:104805 - symbol:Snrpb2 "U2 small nuclear ribonucl... 504 2.9e-48 1
UNIPROTKB|E1C0I4 - symbol:SNRPB2 "Uncharacterized protein... 501 6.0e-48 1
ZFIN|ZDB-GENE-060616-2 - symbol:snrpb2 "small nuclear rib... 286 6.0e-48 2
UNIPROTKB|E2R2A8 - symbol:SNRPB2 "Uncharacterized protein... 498 1.2e-47 1
UNIPROTKB|P08579 - symbol:SNRPB2 "U2 small nuclear ribonu... 498 1.2e-47 1
RGD|1310194 - symbol:Snrpb2 "small nuclear ribonucleoprot... 498 1.2e-47 1
UNIPROTKB|Q2KIR1 - symbol:SNRPA "U1 small nuclear ribonuc... 269 1.6e-47 2
UNIPROTKB|P09012 - symbol:SNRPA "U1 small nuclear ribonuc... 269 1.6e-47 2
UNIPROTKB|Q06AA4 - symbol:SNRPA "U1 small nuclear ribonuc... 269 1.6e-47 2
RGD|1307416 - symbol:Snrpa "small nuclear ribonucleoprote... 269 1.6e-47 2
UNIPROTKB|F1M6Z8 - symbol:Snrpa "Protein Snrpa" species:1... 269 1.6e-47 2
MGI|MGI:1855690 - symbol:Snrpa "small nuclear ribonucleop... 261 1.1e-46 2
ZFIN|ZDB-GENE-030131-2841 - symbol:snrpa "small nuclear r... 259 1.1e-46 2
UNIPROTKB|G5E5Y0 - symbol:SNRPB2 "Uncharacterized protein... 485 3.0e-46 1
DICTYBASE|DDB_G0288391 - symbol:snrpB2 "U2 small nuclear ... 456 3.5e-43 1
WB|WBGene00004385 - symbol:rnp-2 species:6239 "Caenorhabd... 216 8.2e-37 2
WB|WBGene00004386 - symbol:rnp-3 species:6239 "Caenorhabd... 374 1.7e-34 1
UNIPROTKB|Q21323 - symbol:rnp-3 "Protein RNP-3" species:6... 374 1.7e-34 1
POMBASE|SPBC4B4.07c - symbol:usp102 "U1 snRNP-associated ... 195 6.9e-32 2
ASPGD|ASPL0000053720 - symbol:AN0109 species:162425 "Emer... 187 5.3e-30 2
GENEDB_PFALCIPARUM|MAL13P1.35 - symbol:MAL13P1.35 "u1 sma... 178 7.9e-24 2
UNIPROTKB|C0H5A4 - symbol:MAL13P1.35 "U1 small nuclear ri... 178 7.9e-24 2
UNIPROTKB|G4MSP6 - symbol:MGG_07085 "Small nuclear ribonu... 265 6.1e-23 1
UNIPROTKB|J9NXJ9 - symbol:SNRPA "Uncharacterized protein"... 254 9.0e-22 1
UNIPROTKB|F1PFC6 - symbol:SNRPA "Uncharacterized protein"... 165 1.2e-19 2
CGD|CAL0004764 - symbol:orf19.7375 species:5476 "Candida ... 145 1.2e-19 2
UNIPROTKB|Q5A4F9 - symbol:USA1 "Putative uncharacterized ... 145 1.2e-19 2
ASPGD|ASPL0000027676 - symbol:AN5779 species:162425 "Emer... 224 1.4e-18 1
UNIPROTKB|G4MYZ3 - symbol:MGG_04351 "U2 small nuclear rib... 215 1.2e-17 1
POMBASE|SPBC8D2.09c - symbol:msl1 "U2 snRNP-associated pr... 192 3.3e-15 1
CGD|CAL0004460 - symbol:orf19.4748 species:5476 "Candida ... 132 7.6e-09 1
UNIPROTKB|Q5AQ60 - symbol:MSL1 "Putative uncharacterized ... 132 7.6e-09 1
TAIR|locus:2177033 - symbol:AT5G12190 species:3702 "Arabi... 119 1.8e-07 1
TAIR|locus:2079502 - symbol:RS31 "arginine/serine-rich sp... 94 2.1e-06 2
UNIPROTKB|G4MYV6 - symbol:MGG_11418 "Nucleic acid-binding... 106 1.0e-05 2
GENEDB_PFALCIPARUM|PF13_0122 - symbol:PF13_0122 "cyclophi... 100 3.3e-05 1
UNIPROTKB|C0H5C7 - symbol:PF13_0122 "RRM containing cyclo... 100 3.3e-05 1
DICTYBASE|DDB_G0268988 - symbol:DDB_G0268988 "RNA-binding... 119 3.5e-05 1
GENEDB_PFALCIPARUM|PFF0320c - symbol:PFF0320c "polypyrimi... 88 4.8e-05 2
UNIPROTKB|C6KSR3 - symbol:PFF0320c "Polypyrimidine tract ... 88 4.8e-05 2
FB|FBgn0038826 - symbol:Syp "Syncrip" species:7227 "Droso... 93 5.8e-05 2
DICTYBASE|DDB_G0290307 - symbol:DDB_G0290307 "ELAVL1-like... 89 0.00012 2
UNIPROTKB|E1BW94 - symbol:SF3B14 "Uncharacterized protein... 95 0.00013 1
UNIPROTKB|Q2KIQ7 - symbol:SF3B14 "Uncharacterized protein... 95 0.00013 1
UNIPROTKB|E2RRA3 - symbol:SF3B14 "Uncharacterized protein... 95 0.00013 1
UNIPROTKB|Q9Y3B4 - symbol:SF3B14 "Pre-mRNA branch site pr... 95 0.00013 1
UNIPROTKB|F2Z5F1 - symbol:LOC100521960 "Uncharacterized p... 95 0.00013 1
MGI|MGI:1913305 - symbol:0610009D07Rik "RIKEN cDNA 061000... 95 0.00013 1
ZFIN|ZDB-GENE-040625-36 - symbol:sf3b14 "splicing factor ... 95 0.00013 1
SGD|S000001448 - symbol:MSL1 "U2B component of U2 snRNP" ... 94 0.00016 1
DICTYBASE|DDB_G0270436 - symbol:DDB_G0270436 species:4468... 95 0.00017 2
WB|WBGene00003172 - symbol:mec-8 species:6239 "Caenorhabd... 112 0.00021 1
UNIPROTKB|G5ECJ4 - symbol:mec-8 "Protein MEC-8" species:6... 112 0.00021 1
DICTYBASE|DDB_G0286297 - symbol:DDB_G0286297 "putative sp... 93 0.00021 1
ZFIN|ZDB-GENE-060824-3 - symbol:a1cf "apobec1 complementa... 91 0.00026 2
ZFIN|ZDB-GENE-050522-492 - symbol:ptbp1a "polypyrimidine ... 100 0.00027 2
FB|FBgn0035692 - symbol:CG13298 species:7227 "Drosophila ... 92 0.00028 1
UNIPROTKB|F8W9F8 - symbol:A1CF "APOBEC1 complementation f... 93 0.00030 2
UNIPROTKB|Q9NQ94 - symbol:A1CF "APOBEC1 complementation f... 93 0.00031 2
UNIPROTKB|Q8WN55 - symbol:PTBP1 "Polypyrimidine tract-bin... 101 0.00033 2
UNIPROTKB|E2QU21 - symbol:RBPMS2 "Uncharacterized protein... 107 0.00034 1
GENEDB_PFALCIPARUM|PFL1200c - symbol:PFL1200c "hypothetic... 91 0.00036 1
UNIPROTKB|H0YBU9 - symbol:RBPMS "RNA-binding protein with... 91 0.00036 1
UNIPROTKB|Q8I5G8 - symbol:PFL1200c "Splicing factor 3b su... 91 0.00036 1
RGD|1561067 - symbol:Rbpms "RNA binding protein with mult... 91 0.00036 1
WB|WBGene00013293 - symbol:Y57G11A.5 species:6239 "Caenor... 91 0.00036 1
UNIPROTKB|J9P5T5 - symbol:PTBP1 "Uncharacterized protein"... 101 0.00038 2
UNIPROTKB|F1S6R7 - symbol:PTBP1 "Polypyrimidine tract-bin... 101 0.00038 2
UNIPROTKB|F1PCJ7 - symbol:PTBP1 "Uncharacterized protein"... 101 0.00038 2
UNIPROTKB|Q5R9H4 - symbol:A1CF "APOBEC1 complementation f... 93 0.00038 2
RGD|619834 - symbol:A1cf "APOBEC1 complementation factor"... 93 0.00039 2
UNIPROTKB|F1LNL0 - symbol:A1cf "APOBEC1 complementation f... 93 0.00039 2
MGI|MGI:1917115 - symbol:A1cf "APOBEC1 complementation fa... 93 0.00040 2
UNIPROTKB|F5H357 - symbol:RBPMS "RNA-binding protein with... 101 0.00041 1
UNIPROTKB|F1SD00 - symbol:A1CF "Uncharacterized protein" ... 92 0.00043 2
UNIPROTKB|P26599 - symbol:PTBP1 "Polypyrimidine tract-bin... 100 0.00044 2
ASPGD|ASPL0000063387 - symbol:AN7700 species:162425 "Emer... 113 0.00046 1
UNIPROTKB|F1P2M9 - symbol:RBPMS2 "Uncharacterized protein... 105 0.00047 1
UNIPROTKB|Q29099 - symbol:PTBP1 "Polypyrimidine tract-bin... 100 0.00050 2
UNIPROTKB|E1B7G9 - symbol:A1CF "Uncharacterized protein" ... 92 0.00053 2
DICTYBASE|DDB_G0274523 - symbol:DDB_G0274523 "RNA recogni... 96 0.00073 2
POMBASE|SPBC29A3.07c - symbol:sab14 "U2 snRNP-associated ... 88 0.00078 1
MGI|MGI:1334446 - symbol:Rbpms "RNA binding protein gene ... 103 0.00084 1
RGD|62047 - symbol:Ptbp1 "polypyrimidine tract binding pr... 98 0.00088 2
UNIPROTKB|H0YHU8 - symbol:SART3 "Squamous cell carcinoma ... 97 0.00088 1
UNIPROTKB|F1P5K0 - symbol:PTBP1 "Uncharacterized protein"... 98 0.00097 2
UNIPROTKB|E1BVR1 - symbol:PTBP1 "Uncharacterized protein"... 98 0.00099 2
>TAIR|locus:2007417 [details] [associations]
symbol:AT1G06960 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0005686 "U2 snRNP"
evidence=IDA] [GO:0015030 "Cajal body" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0005737 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 GO:GO:0000398
GO:GO:0017069 GO:GO:0005686 EMBL:AC067971 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:AY080742 EMBL:AY142487 IPI:IPI00542329
IPI:IPI00548592 IPI:IPI00846257 PIR:C86204 RefSeq:NP_001077472.1
RefSeq:NP_172177.3 RefSeq:NP_850936.1 UniGene:At.42321
ProteinModelPortal:Q8H1S6 SMR:Q8H1S6 STRING:Q8H1S6
EnsemblPlants:AT1G06960.1 GeneID:837206 KEGG:ath:AT1G06960
GeneFarm:4538 TAIR:At1g06960 InParanoid:Q8H1S6 OMA:DIACATQ
PhylomeDB:Q8H1S6 Genevestigator:Q8H1S6 Uniprot:Q8H1S6
Length = 229
Score = 754 (270.5 bits), Expect = 9.3e-75, P = 9.3e-75
Identities = 153/231 (66%), Positives = 169/231 (73%)
Query: 1 MITGDIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+T DIPPNQ+IY RSLYCLFSQ+GR+ DVVALKTPKLRGQAWVVF+
Sbjct: 1 MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXX 120
EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSD V K +GSFVP
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120
Query: 121 XXXXXSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
SM NG Q NG F+ + Q+T PNNILFI NLP ET S ML++LF+QY
Sbjct: 121 EETQQPSMPNGATTQ-NGMPVPPFQPSG-QDTMPPNNILFIHNLPIETNSMMLQLLFEQY 178
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PGFKE+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKITPQNPM ++FAKK
Sbjct: 179 PGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229
>TAIR|locus:2065742 [details] [associations]
symbol:U2B'' "U2 small nuclear ribonucleoprotein B"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISM] [GO:0000354 "cis assembly of pre-catalytic
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0015030 "Cajal body"
evidence=IDA] [GO:0005686 "U2 snRNP" evidence=IDA] [GO:0005730
"nucleolus" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030 EMBL:AC002338
GO:GO:0017069 GO:GO:0005686 GO:GO:0000354 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
ProtClustDB:CLSN2683617 EMBL:BT003068 EMBL:AK227609 EMBL:AY087401
IPI:IPI00546965 PIR:C84706 RefSeq:NP_180585.1 UniGene:At.19782
ProteinModelPortal:O22922 SMR:O22922 IntAct:O22922 STRING:O22922
PaxDb:O22922 PRIDE:O22922 EnsemblPlants:AT2G30260.1 GeneID:817576
KEGG:ath:AT2G30260 GeneFarm:4539 TAIR:At2g30260 InParanoid:O22922
KO:K11094 OMA:TTANKKP PhylomeDB:O22922 Genevestigator:O22922
Uniprot:O22922
Length = 232
Score = 753 (270.1 bits), Expect = 1.2e-74, P = 1.2e-74
Identities = 152/234 (64%), Positives = 175/234 (74%)
Query: 1 MITGDIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+T DIPPNQ+IY RSLYCLFSQ+GRI DVVALKTPKLRGQAWV FS
Sbjct: 1 MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXX 120
EVTAA +AVRQMQNFPFYDKPMR+QYAK+KSDC+AK +G+FVP
Sbjct: 61 EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKRED 120
Query: 121 XXXXXSS---MANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
++ ANG A +NG A SF+ + QET PNNILFIQNLPHETTS ML++LF
Sbjct: 121 SQRPNTANGPSANGPSA-NNGVPAPSFQPSG-QETMPPNNILFIQNLPHETTSMMLQLLF 178
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+QYPGFKE+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKITPQNPM I+FAKK
Sbjct: 179 EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>UNIPROTKB|B8AM21 [details] [associations]
symbol:OsI_11177 "U2 small nuclear ribonucleoprotein B''"
species:39946 "Oryza sativa Indica Group" [GO:0005654 "nucleoplasm"
evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS] [GO:0015030
"Cajal body" evidence=ISS] [GO:0005730 "nucleolus" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0015030
GO:GO:0000398 GO:GO:0017069 GO:GO:0005686 EMBL:CM000128
eggNOG:NOG317159 PANTHER:PTHR10501 HOGENOM:HOG000217519
ProteinModelPortal:B8AM21 STRING:B8AM21 Gramene:B8AM21
Uniprot:B8AM21
Length = 232
Score = 692 (248.7 bits), Expect = 3.5e-68, P = 3.5e-68
Identities = 146/233 (62%), Positives = 163/233 (69%)
Query: 1 MITGDIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQT+Y RSLY L SQYGRI DVVALKTPKLRGQAWVVFS
Sbjct: 1 MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXX 120
E+TAA+NA R +Q F FY K MR+QYAK+KSDC+A EDGS P
Sbjct: 61 EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120
Query: 121 XXXXXSSMANGTGAQSNG-GTAASFRNANTQETAAP-NNILFIQNLPHETTSSMLEMLFQ 178
S N AQSNG G AS +QE AP NNILFIQNLP ETTS ML++LFQ
Sbjct: 121 AEEAQQSGPNAA-AQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 179
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QYPGF+EVRMIEAKPGIAFVE+EDD QS +AMQALQGFKITP NPMAI++AKK
Sbjct: 180 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
>UNIPROTKB|Q10MR0 [details] [associations]
symbol:LOC_Os03g18720 "U2 small nuclear ribonucleoprotein
B''" species:39947 "Oryza sativa Japonica Group" [GO:0005654
"nucleoplasm" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0015030 "Cajal body" evidence=ISS] [GO:0005730 "nucleolus"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
EMBL:DP000009 EMBL:AP008209 GO:GO:0015030 GO:GO:0000398
EMBL:CM000140 GO:GO:0017069 GO:GO:0005686 eggNOG:NOG317159
PANTHER:PTHR10501 HOGENOM:HOG000217519 ProtClustDB:CLSN2683617
KO:K11094 OMA:DIACATQ EMBL:AK103337 RefSeq:NP_001049846.1
UniGene:Os.75636 ProteinModelPortal:Q10MR0 STRING:Q10MR0
PRIDE:Q10MR0 EnsemblPlants:LOC_Os03g18720.1 GeneID:4332557
KEGG:dosa:Os03t0298800-01 KEGG:osa:4332557 Gramene:Q10MR0
Uniprot:Q10MR0
Length = 232
Score = 689 (247.6 bits), Expect = 7.2e-68, P = 7.2e-68
Identities = 145/233 (62%), Positives = 163/233 (69%)
Query: 1 MITGDIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQT+Y RSLY L SQYGRI DVVALKTPKLRGQAWVVFS
Sbjct: 1 MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXX 120
E+TAA+NA R +Q F FY K MR+QYAK++SDC+A EDGS P
Sbjct: 61 EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120
Query: 121 XXXXXSSMANGTGAQSNG-GTAASFRNANTQETAAP-NNILFIQNLPHETTSSMLEMLFQ 178
S N AQSNG G AS +QE AP NNILFIQNLP ETTS ML++LFQ
Sbjct: 121 AEEAQQSGPNAA-AQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 179
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QYPGF+EVRMIEAKPGIAFVE+EDD QS +AMQALQGFKITP NPMAI++AKK
Sbjct: 180 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
>TAIR|locus:2061976 [details] [associations]
symbol:U1A "spliceosomal protein U1A" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005634 "nucleus"
evidence=ISM;IDA] [GO:0009651 "response to salt stress"
evidence=IGI] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005685 "U1
snRNP" evidence=ISS;IDA] [GO:0005829 "cytosol" evidence=IDA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005829
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0005730 GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:AC002535 GO:GO:0017069 GO:GO:0005685 eggNOG:NOG317159
PANTHER:PTHR10501 HSSP:P09012 EMBL:Z49991 EMBL:AY052663
EMBL:AY059875 EMBL:AY093341 EMBL:AY142070 IPI:IPI00542976
PIR:S59118 RefSeq:NP_182280.1 UniGene:At.200
ProteinModelPortal:Q39244 SMR:Q39244 IntAct:Q39244 STRING:Q39244
PaxDb:Q39244 PRIDE:Q39244 EnsemblPlants:AT2G47580.1 GeneID:819371
KEGG:ath:AT2G47580 GeneFarm:4533 TAIR:At2g47580
HOGENOM:HOG000217519 InParanoid:Q39244 KO:K11091 OMA:ATNAMRT
PhylomeDB:Q39244 ProtClustDB:CLSN2683617 Genevestigator:Q39244
Uniprot:Q39244
Length = 250
Score = 301 (111.0 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 60/79 (75%), Positives = 68/79 (86%)
Query: 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQA 212
A PNNILF+QNLPHETT +L+MLF QY GFKEVRMIEAKPGIAFVEF D++QS++AMQ
Sbjct: 173 APPNNILFVQNLPHETTPMVLQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQG 232
Query: 213 LQGFKITPQNPMAITFAKK 231
LQGFKI QN M IT+AKK
Sbjct: 233 LQGFKIQ-QNQMLITYAKK 250
Score = 277 (102.6 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
Identities = 53/99 (53%), Positives = 68/99 (68%)
Query: 5 DIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ PNQTIY +SL +FSQ+G+I +++A KT K +GQAWVVF +
Sbjct: 13 EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVP 103
AS A+ +M NFPFYDK MRIQYAK+KSD VAK DG+FVP
Sbjct: 73 ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVP 111
>UNIPROTKB|A2Y0J7 [details] [associations]
symbol:OsI_18512 "U1 small nuclear ribonucleoprotein A"
species:39946 "Oryza sativa Indica Group" [GO:0005685 "U1 snRNP"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0000398 EMBL:CM000130 GO:GO:0017069
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 ProteinModelPortal:A2Y0J7 STRING:A2Y0J7
Gramene:A2Y0J7 Uniprot:A2Y0J7
Length = 253
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 116/235 (49%), Positives = 144/235 (61%)
Query: 7 PPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPN TIY +SL +FSQ+G+I DV+A KT K +GQAWVVF +V +A+
Sbjct: 20 PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXXXXXXXS 126
A++ MQ+FPF++KPMRIQYAK+KSD +AK DG+FVP
Sbjct: 80 EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139
Query: 127 SMANGTGAQSNGGTAAS-------FRNANT---QETAAPNNILFIQNLPHETTSSMLEML 176
S G G + G + F A E PNNILF+QNLPHETT ML+ML
Sbjct: 140 SQV-GLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQML 198
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F QYPGFKEVRM+EAKPGIAFVE+ D+ Q++ AM LQGFKIT N M I++AKK
Sbjct: 199 FCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253
>UNIPROTKB|Q0DKM4 [details] [associations]
symbol:LOC_Os05g06280 "U1 small nuclear ribonucleoprotein
A" species:39947 "Oryza sativa Japonica Group" [GO:0005685 "U1
snRNP" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005730 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0005681 EMBL:AP008211 EMBL:CM000142 GO:GO:0000398
GO:GO:0017069 GO:GO:0005685 PANTHER:PTHR10501 KO:K11091
ProtClustDB:CLSN2683617 RefSeq:NP_001054685.1 UniGene:Os.9766
ProteinModelPortal:Q0DKM4 GeneID:4337846 KEGG:osa:4337846
Gramene:Q0DKM4 Uniprot:Q0DKM4
Length = 253
Score = 533 (192.7 bits), Expect = 2.4e-51, P = 2.4e-51
Identities = 116/235 (49%), Positives = 144/235 (61%)
Query: 7 PPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPN TIY +SL +FSQ+G+I DV+A KT K +GQAWVVF +V +A+
Sbjct: 20 PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXXXXXXXS 126
A++ MQ+FPF++KPMRIQYAK+KSD +AK DG+FVP
Sbjct: 80 EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139
Query: 127 SMANGTGAQSNGGTAAS-------FRNANT---QETAAPNNILFIQNLPHETTSSMLEML 176
S G G + G + F A E PNNILF+QNLPHETT ML+ML
Sbjct: 140 SQV-GLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQML 198
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F QYPGFKEVRM+EAKPGIAFVE+ D+ Q++ AM LQGFKIT N M I++AKK
Sbjct: 199 FCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253
>FB|FBgn0003449 [details] [associations]
symbol:snf "sans fille" species:7227 "Drosophila
melanogaster" [GO:0048477 "oogenesis" evidence=IMP;TAS] [GO:0030532
"small nuclear ribonucleoprotein complex" evidence=ISS;NAS;IDA]
[GO:0005681 "spliceosomal complex" evidence=ISS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;ISS;NAS] [GO:0019099 "female
germ-line sex determination" evidence=NAS] [GO:0005692 "U11 snRNP"
evidence=ISS] [GO:0030619 "U1 snRNA binding" evidence=IDA;NAS]
[GO:0003729 "mRNA binding" evidence=ISS;NAS] [GO:0005634 "nucleus"
evidence=IC;NAS;TAS] [GO:0007539 "primary sex determination, soma"
evidence=NAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0005685
"U1 snRNP" evidence=ISS] [GO:0005686 "U2 snRNP" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0000381
"regulation of alternative mRNA splicing, via spliceosome"
evidence=IMP] [GO:0043234 "protein complex" evidence=IPI]
[GO:0005515 "protein binding" evidence=IPI] [GO:0071011
"precatalytic spliceosome" evidence=IDA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IDA] [GO:0035614 "snRNA stem-loop
binding" evidence=IDA] [GO:0030620 "U2 snRNA binding" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0043234
GO:GO:0000166 EMBL:AE014298 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0048477 GO:GO:0071011 GO:GO:0000398 GO:GO:0071013
GO:GO:0005686 GO:GO:0019099 GO:GO:0000381 GO:GO:0007539
GO:GO:0005685 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
GO:GO:0030620 PANTHER:PTHR10501 GO:GO:0030619 OMA:MSQAPRM
EMBL:M89775 EMBL:L29521 EMBL:AY061491 PIR:A54279 RefSeq:NP_511045.1
UniGene:Dm.2625 PDB:2AYM PDB:2B0G PDB:2K3K PDBsum:2AYM PDBsum:2B0G
PDBsum:2K3K ProteinModelPortal:P43332 SMR:P43332 DIP:DIP-23676N
IntAct:P43332 MINT:MINT-1634151 STRING:P43332 PaxDb:P43332
PRIDE:P43332 EnsemblMetazoa:FBtr0070748 GeneID:31442
KEGG:dme:Dmel_CG4528 CTD:31442 FlyBase:FBgn0003449
InParanoid:P43332 OrthoDB:EOG4TMPJ8 PhylomeDB:P43332 ChiTaRS:snf
EvolutionaryTrace:P43332 GenomeRNAi:31442 NextBio:773664
Bgee:P43332 GermOnline:CG4528 GO:GO:0035614 Uniprot:P43332
Length = 216
Score = 277 (102.6 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
Identities = 54/94 (57%), Positives = 68/94 (72%)
Query: 8 PNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQTIY +SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +ASN
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASN 64
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+R MQ FPFYDKPM+I Y+KS SD VAK G+F
Sbjct: 65 ALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTF 98
Score = 261 (96.9 bits), Expect = 4.7e-50, Sum P(2) = 4.7e-50
Identities = 52/92 (56%), Positives = 64/92 (69%)
Query: 140 TAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVE 199
++A N N Q PN ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVE
Sbjct: 125 SSAENSNPNAQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVE 184
Query: 200 FEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F ++QS+ A +ALQGFKITP + M ITFAKK
Sbjct: 185 FTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>UNIPROTKB|J9NSX4 [details] [associations]
symbol:LOC100683259 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
OMA:TTANKKP EMBL:AAEX03017376 Ensembl:ENSCAFT00000021878
Uniprot:J9NSX4
Length = 230
Score = 277 (102.6 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 53/97 (54%), Positives = 69/97 (71%)
Query: 5 DIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIY RSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 12 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 71
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F
Sbjct: 72 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 108
Score = 248 (92.4 bits), Expect = 1.1e-48, Sum P(2) = 1.1e-48
Identities = 48/77 (62%), Positives = 57/77 (74%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEFE+D Q+ A ALQ
Sbjct: 154 PNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQ 213
Query: 215 GFKITPQNPMAITFAKK 231
GFKITP + M IT+AKK
Sbjct: 214 GFKITPSHAMKITYAKK 230
>MGI|MGI:104805 [details] [associations]
symbol:Snrpb2 "U2 small nuclear ribonucleoprotein B"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=ISO] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 MGI:MGI:104805 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11094 OMA:TTANKKP CTD:6629 HOVERGEN:HBG000895 OrthoDB:EOG4H72CH
EMBL:AK005107 EMBL:AK011274 EMBL:AK012944 EMBL:AK013871
EMBL:BC026794 IPI:IPI00132576 RefSeq:NP_067310.1 UniGene:Mm.1323
ProteinModelPortal:Q9CQI7 SMR:Q9CQI7 STRING:Q9CQI7
PhosphoSite:Q9CQI7 PaxDb:Q9CQI7 PRIDE:Q9CQI7
Ensembl:ENSMUST00000008477 GeneID:20639 KEGG:mmu:20639
InParanoid:Q9CQI7 ChiTaRS:SNRPB2 NextBio:299043 Bgee:Q9CQI7
CleanEx:MM_SNRPB2 Genevestigator:Q9CQI7
GermOnline:ENSMUSG00000008333 Uniprot:Q9CQI7
Length = 225
Score = 504 (182.5 bits), Expect = 2.9e-48, P = 2.9e-48
Identities = 107/227 (47%), Positives = 134/227 (59%)
Query: 5 DIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIY RSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXXXXXX 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAAN 121
Query: 125 XSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
A + GTAA N + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKPGQGTPNAANTQGTAAP--NPQVPDYP-PNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>UNIPROTKB|E1C0I4 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0071013 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 KO:K11094 OMA:TTANKKP CTD:6629 EMBL:AADN02044178
IPI:IPI00603637 RefSeq:XP_419331.1 UniGene:Gga.4634
ProteinModelPortal:E1C0I4 Ensembl:ENSGALT00000031980 GeneID:421261
KEGG:gga:421261 NextBio:20824053 Uniprot:E1C0I4
Length = 226
Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
Identities = 104/227 (45%), Positives = 133/227 (58%)
Query: 5 DIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIY RSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXXXXXX 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKRKEKKKAKSLEQSANAAN 121
Query: 125 XSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G S S +N + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 -KKIIQGATQNSTSAPGTSPQNQQVPDNP-PNYILFLNNLPEETNEMMLSMLFNQFPGFK 179
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE++ Q+ A ALQGFKITP + M IT+AKK
Sbjct: 180 EVRLVPGRHDIAFVEFENECQAGAARDALQGFKITPSHAMKITYAKK 226
>ZFIN|ZDB-GENE-060616-2 [details] [associations]
symbol:snrpb2 "small nuclear ribonucleoprotein
polypeptide B2" species:7955 "Danio rerio" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-060616-2 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HSSP:P08579
HOGENOM:HOG000217519 OMA:TTANKKP HOVERGEN:HBG000895
OrthoDB:EOG4H72CH EMBL:CU464066 EMBL:BC059527 IPI:IPI00486390
UniGene:Dr.14007 STRING:Q6PBZ6 Ensembl:ENSDART00000057601
InParanoid:Q6PBZ6 Uniprot:Q6PBZ6
Length = 229
Score = 286 (105.7 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 55/97 (56%), Positives = 72/97 (74%)
Query: 5 DIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIY RSLY LFSQ+G+I D+VALKT ++RGQA+V+F E++A
Sbjct: 11 DIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSA 70
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+NA+RQ+Q FPFY+KPMRIQYAK+ SD V+K G++
Sbjct: 71 ATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTY 107
Score = 232 (86.7 bits), Expect = 6.0e-48, Sum P(2) = 6.0e-48
Identities = 45/77 (58%), Positives = 55/77 (71%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN ILF+ NLP ET ML MLF Q+PGFKEVR++ K I+FVEFE + Q+ +A ALQ
Sbjct: 153 PNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQ 212
Query: 215 GFKITPQNPMAITFAKK 231
GF+IT M IT+AKK
Sbjct: 213 GFRITATCAMKITYAKK 229
>UNIPROTKB|E2R2A8 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:DIACATQ CTD:6629 EMBL:AAEX03013775
RefSeq:NP_001238897.1 UniGene:Cfa.10214 Ensembl:ENSCAFT00000039015
GeneID:477148 KEGG:cfa:477148 NextBio:20852679 Uniprot:E2R2A8
Length = 225
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 107/228 (46%), Positives = 135/228 (59%)
Query: 5 DIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIY RSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXXXXXX 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATT-- 119
Query: 125 XSSMANGTGAQSNGGTAASFRNANTQ-ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
+S G G + T + N Q PN ILF+ NLP ET ML MLF Q+PGF
Sbjct: 120 -ASKKPGQGTPNAANTQGN-STPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGF 177
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
KEVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 178 KEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>UNIPROTKB|P08579 [details] [associations]
symbol:SNRPB2 "U2 small nuclear ribonucleoprotein B''"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC;TAS] [GO:0005686 "U2 snRNP"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005681 "spliceosomal complex" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005654
GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330 EMBL:CH471133
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 GO:GO:0005686
eggNOG:NOG317159 PANTHER:PTHR10501 EMBL:AL034428
HOGENOM:HOG000217519 PDB:1A9N PDBsum:1A9N KO:K11094 OMA:TTANKKP
EMBL:M15841 EMBL:AK313004 EMBL:BC018022 EMBL:BC036737
IPI:IPI00029267 PIR:A25910 RefSeq:NP_003083.1 RefSeq:NP_937863.1
UniGene:Hs.280378 ProteinModelPortal:P08579 SMR:P08579
IntAct:P08579 MINT:MINT-156501 STRING:P08579 PhosphoSite:P08579
DMDM:134095 PaxDb:P08579 PeptideAtlas:P08579 PRIDE:P08579
DNASU:6629 Ensembl:ENST00000246071 Ensembl:ENST00000377943
GeneID:6629 KEGG:hsa:6629 UCSC:uc002wph.2 CTD:6629
GeneCards:GC20P016658 HGNC:HGNC:11155 MIM:603520 neXtProt:NX_P08579
PharmGKB:PA35996 HOVERGEN:HBG000895 InParanoid:P08579
OrthoDB:EOG4H72CH PhylomeDB:P08579 EvolutionaryTrace:P08579
GenomeRNAi:6629 NextBio:25823 Bgee:P08579 CleanEx:HS_SNRPB2
Genevestigator:P08579 GermOnline:ENSG00000125870 Uniprot:P08579
Length = 225
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 106/228 (46%), Positives = 136/228 (59%)
Query: 5 DIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIY RSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXXXXXX 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATT-- 119
Query: 125 XSSMANGTGAQSNGGTAASFRNANTQ-ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
++ G G ++ T + N Q PN ILF+ NLP ET ML MLF Q+PGF
Sbjct: 120 -TNKKPGQGTPNSANTQGN-STPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGF 177
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
KEVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 178 KEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>RGD|1310194 [details] [associations]
symbol:Snrpb2 "small nuclear ribonucleoprotein polypeptide B''"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0071013 "catalytic
step 2 spliceosome" evidence=IEA;ISO] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:1310194 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0000398 GO:GO:0071013 GO:GO:0017069 EMBL:CH474026
eggNOG:NOG317159 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11094 OMA:DIACATQ CTD:6629
HOVERGEN:HBG000895 OrthoDB:EOG4H72CH EMBL:BC168760 IPI:IPI00213414
RefSeq:NP_001102062.1 UniGene:Rn.7712 STRING:B5DEQ4
Ensembl:ENSRNOT00000006900 GeneID:362223 KEGG:rno:362223
UCSC:RGD:1310194 NextBio:679082 Genevestigator:B5DEQ4
Uniprot:B5DEQ4
Length = 225
Score = 498 (180.4 bits), Expect = 1.2e-47, P = 1.2e-47
Identities = 108/228 (47%), Positives = 135/228 (59%)
Query: 5 DIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIY RSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXXXXXX 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTMEQAAAAAN 121
Query: 125 XSSMANGTGAQSNG-GTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
GT +N G AA N + PN ILF+ NLP ET ML MLF Q+PGF
Sbjct: 122 KKP-GQGTPNSANTQGNAAP--NPQVPDYP-PNYILFLNNLPEETNEMMLSMLFNQFPGF 177
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
KEVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 178 KEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>UNIPROTKB|Q2KIR1 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9913 "Bos taurus" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 KO:K11091
HOVERGEN:HBG000895 EMBL:BC112544 IPI:IPI00704416
RefSeq:NP_001039504.1 UniGene:Bt.92011 ProteinModelPortal:Q2KIR1
SMR:Q2KIR1 STRING:Q2KIR1 PRIDE:Q2KIR1 Ensembl:ENSBTAT00000011963
GeneID:509802 KEGG:bta:509802 CTD:6626 InParanoid:Q2KIR1
OMA:MSQAPRM OrthoDB:EOG498V1W NextBio:20869138 Uniprot:Q2KIR1
Length = 282
Score = 269 (99.8 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 51/102 (50%), Positives = 70/102 (68%)
Query: 1 MITGDIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M + PN TIY +SLY +FSQ+G+I D++ ++ K+RGQA+V+F
Sbjct: 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
EV++A+NA+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 102
Score = 245 (91.3 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>UNIPROTKB|P09012 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC;TAS] [GO:0005681 "spliceosomal complex"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0005654 "nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
Reactome:REACT_71 InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675 Gene3D:3.30.70.330
GO:GO:0005681 GO:GO:0003723 GO:GO:0000398 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 PDB:3PGW PDBsum:3PGW
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:M60784 EMBL:M60779 EMBL:M60780
EMBL:M60781 EMBL:M60782 EMBL:M60783 EMBL:X06347 EMBL:BC000405
EMBL:BC008290 IPI:IPI00012382 PIR:JQ1528 RefSeq:NP_004587.1
UniGene:Hs.466775 PDB:1AUD PDB:1CX0 PDB:1DRZ PDB:1DZ5 PDB:1FHT
PDB:1M5K PDB:1M5O PDB:1M5P PDB:1M5V PDB:1NU4 PDB:1OIA PDB:1SJ3
PDB:1SJ4 PDB:1SJF PDB:1U6B PDB:1URN PDB:1VBX PDB:1VBY PDB:1VBZ
PDB:1VC0 PDB:1VC5 PDB:1VC6 PDB:1VC7 PDB:1ZZN PDB:2A3J PDB:2NZ4
PDB:2OIH PDB:2OJ3 PDB:2U1A PDB:3BO2 PDB:3BO3 PDB:3BO4 PDB:3CUL
PDB:3CUN PDB:3EGZ PDB:3G8S PDB:3G8T PDB:3G96 PDB:3G9C PDB:3HHN
PDB:3IIN PDB:3IRW PDB:3IWN PDB:3K0J PDB:3L3C PDB:3MUM PDB:3MUR
PDB:3MUT PDB:3MUV PDB:3MXH PDB:3P49 PDB:3R1H PDB:3R1L PDB:3UCU
PDB:3UCZ PDB:3UD3 PDB:3UD4 PDB:3UTR PDBsum:1AUD PDBsum:1CX0
PDBsum:1DRZ PDBsum:1DZ5 PDBsum:1FHT PDBsum:1M5K PDBsum:1M5O
PDBsum:1M5P PDBsum:1M5V PDBsum:1NU4 PDBsum:1OIA PDBsum:1SJ3
PDBsum:1SJ4 PDBsum:1SJF PDBsum:1U6B PDBsum:1URN PDBsum:1VBX
PDBsum:1VBY PDBsum:1VBZ PDBsum:1VC0 PDBsum:1VC5 PDBsum:1VC6
PDBsum:1VC7 PDBsum:1ZZN PDBsum:2A3J PDBsum:2NZ4 PDBsum:2OIH
PDBsum:2OJ3 PDBsum:2U1A PDBsum:3BO2 PDBsum:3BO3 PDBsum:3BO4
PDBsum:3CUL PDBsum:3CUN PDBsum:3EGZ PDBsum:3G8S PDBsum:3G8T
PDBsum:3G96 PDBsum:3G9C PDBsum:3HHN PDBsum:3IIN PDBsum:3IRW
PDBsum:3IWN PDBsum:3K0J PDBsum:3L3C PDBsum:3MUM PDBsum:3MUR
PDBsum:3MUT PDBsum:3MUV PDBsum:3MXH PDBsum:3P49 PDBsum:3R1H
PDBsum:3R1L PDBsum:3UCU PDBsum:3UCZ PDBsum:3UD3 PDBsum:3UD4
PDBsum:3UTR ProteinModelPortal:P09012 SMR:P09012 DIP:DIP-29407N
IntAct:P09012 MINT:MINT-125665 STRING:P09012 PhosphoSite:P09012
DMDM:134092 PaxDb:P09012 PeptideAtlas:P09012 PRIDE:P09012
Ensembl:ENST00000243563 GeneID:6626 KEGG:hsa:6626 UCSC:uc002ooz.3
GeneCards:GC19P041256 HGNC:HGNC:11151 HPA:CAB004652 MIM:182285
neXtProt:NX_P09012 PharmGKB:PA35993 InParanoid:P09012
PhylomeDB:P09012 ChiTaRS:SNRPA EvolutionaryTrace:P09012
GenomeRNAi:6626 NextBio:25809 ArrayExpress:P09012 Bgee:P09012
CleanEx:HS_SNRPA Genevestigator:P09012 GermOnline:ENSG00000077312
Uniprot:P09012
Length = 282
Score = 269 (99.8 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 51/102 (50%), Positives = 70/102 (68%)
Query: 1 MITGDIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M + PN TIY +SLY +FSQ+G+I D++ ++ K+RGQA+V+F
Sbjct: 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
EV++A+NA+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 102
Score = 245 (91.3 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>UNIPROTKB|Q06AA4 [details] [associations]
symbol:SNRPA "U1 small nuclear ribonucleoprotein A"
species:9823 "Sus scrofa" [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W EMBL:DQ972960
RefSeq:NP_001070690.1 UniGene:Ssc.7670 ProteinModelPortal:Q06AA4
SMR:Q06AA4 STRING:Q06AA4 Ensembl:ENSSSCT00000003330 GeneID:768109
KEGG:ssc:768109 ArrayExpress:Q06AA4 Uniprot:Q06AA4
Length = 282
Score = 269 (99.8 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 51/102 (50%), Positives = 70/102 (68%)
Query: 1 MITGDIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M + PN TIY +SLY +FSQ+G+I D++ ++ K+RGQA+V+F
Sbjct: 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
EV++A+NA+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 102
Score = 245 (91.3 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>RGD|1307416 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005681 "spliceosomal complex" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1307416
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
EMBL:CH473979 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895 CTD:6626
OrthoDB:EOG498V1W IPI:IPI00364044 EMBL:BC086331
RefSeq:NP_001008304.1 UniGene:Rn.9347 SMR:Q5U214 STRING:Q5U214
GeneID:292729 KEGG:rno:292729 UCSC:RGD:1307416 InParanoid:Q5U214
NextBio:634621 Genevestigator:Q5U214 Uniprot:Q5U214
Length = 281
Score = 269 (99.8 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 51/102 (50%), Positives = 70/102 (68%)
Query: 1 MITGDIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M + PN TIY +SLY +FSQ+G+I D++ ++ K+RGQA+V+F
Sbjct: 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
EV++A+NA+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV
Sbjct: 61 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 102
Score = 245 (91.3 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 205 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 264
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 265 GFKITQNNAMKISFAKK 281
>UNIPROTKB|F1M6Z8 [details] [associations]
symbol:Snrpa "Protein Snrpa" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
RGD:1307416 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681
GO:GO:0000398 GO:GO:0017069 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 OMA:MSQAPRM IPI:IPI00364044 PRIDE:F1M6Z8
Ensembl:ENSRNOT00000002053 ArrayExpress:F1M6Z8 Uniprot:F1M6Z8
Length = 285
Score = 269 (99.8 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 51/102 (50%), Positives = 70/102 (68%)
Query: 1 MITGDIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M + PN TIY +SLY +FSQ+G+I D++ ++ K+RGQA+V+F
Sbjct: 5 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 64
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
EV++A+NA+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV
Sbjct: 65 EVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 106
Score = 245 (91.3 bits), Expect = 1.6e-47, Sum P(2) = 1.6e-47
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 209 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 268
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 269 GFKITQNNAMKISFAKK 285
>MGI|MGI:1855690 [details] [associations]
symbol:Snrpa "small nuclear ribonucleoprotein polypeptide A"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1855690
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159
GeneTree:ENSGT00390000007046 PANTHER:PTHR10501 HOGENOM:HOG000217519
KO:K11091 HOVERGEN:HBG000895 CTD:6626 OMA:MSQAPRM OrthoDB:EOG498V1W
EMBL:L15447 EMBL:BC003229 EMBL:BC094006 EMBL:BC096648
IPI:IPI00122350 PIR:S42113 RefSeq:NP_001040102.1 RefSeq:NP_056597.3
UniGene:Mm.386890 ProteinModelPortal:Q62189 SMR:Q62189
STRING:Q62189 PhosphoSite:Q62189 PaxDb:Q62189 PRIDE:Q62189
Ensembl:ENSMUST00000080356 Ensembl:ENSMUST00000122202
Ensembl:ENSMUST00000163311 GeneID:53607 KEGG:mmu:53607
InParanoid:Q62189 NextBio:310305 Bgee:Q62189 CleanEx:MM_SNRPA
Genevestigator:Q62189 GermOnline:ENSMUSG00000061479 Uniprot:Q62189
Length = 287
Score = 261 (96.9 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 49/94 (52%), Positives = 66/94 (70%)
Query: 9 NQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TIY +SLY +FSQ+G+I D++ + K+RGQA+V+F EVT+A+NA
Sbjct: 15 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNA 74
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
+R MQ FPFYDKPMRIQYAK+ SD +AK G++V
Sbjct: 75 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYV 108
Score = 245 (91.3 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 211 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 270
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 271 GFKITQNNAMKISFAKK 287
>ZFIN|ZDB-GENE-030131-2841 [details] [associations]
symbol:snrpa "small nuclear ribonucleoprotein
polypeptide A" species:7955 "Danio rerio" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 ZFIN:ZDB-GENE-030131-2841 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398 GO:GO:0017069
EMBL:CU138549 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HSSP:P09012 HOGENOM:HOG000217519 KO:K11091 HOVERGEN:HBG000895
CTD:6626 OMA:MSQAPRM EMBL:CABZ01062168 EMBL:BC064308
IPI:IPI00504389 RefSeq:NP_955965.1 UniGene:Dr.76157 SMR:Q6P2T1
STRING:Q6P2T1 Ensembl:ENSDART00000012018 GeneID:324121
KEGG:dre:324121 InParanoid:Q6P2T1 NextBio:20808604 Uniprot:Q6P2T1
Length = 281
Score = 259 (96.2 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 48/94 (51%), Positives = 65/94 (69%)
Query: 9 NQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TIY +SLY +FSQ+G+I D++ +T K++GQA+V+F E+ +ASNA
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNA 68
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
+R MQ FPFYDKPMRIQY+K SD +AK G+FV
Sbjct: 69 LRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFV 102
Score = 247 (92.0 bits), Expect = 1.1e-46, Sum P(2) = 1.1e-46
Identities = 47/77 (61%), Positives = 59/77 (76%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A +ALQ
Sbjct: 205 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQ 264
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 265 GFKITQSNAMKISFAKK 281
>UNIPROTKB|G5E5Y0 [details] [associations]
symbol:SNRPB2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398 GO:GO:0071013
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
KO:K11094 OMA:TTANKKP CTD:6629 EMBL:DAAA02035191
RefSeq:NP_001179481.1 UniGene:Bt.61931 Ensembl:ENSBTAT00000039526
GeneID:767873 KEGG:bta:767873 NextBio:20918232 Uniprot:G5E5Y0
Length = 218
Score = 485 (175.8 bits), Expect = 3.0e-46, P = 3.0e-46
Identities = 105/227 (46%), Positives = 134/227 (59%)
Query: 5 DIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIY RSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXXXXXX 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQT----- 116
Query: 125 XSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
++ N A + G N + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 117 -ATTVNKKPANTQGNATP---NPQVPDYP-PNYILFLNNLPEETNEMMLSMLFNQFPGFK 171
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 172 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 218
>DICTYBASE|DDB_G0288391 [details] [associations]
symbol:snrpB2 "U2 small nuclear ribonucleoprotein B"
species:44689 "Dictyostelium discoideum" [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0288391 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0005681 GenomeReviews:CM000154_GR EMBL:AAFI02000111
GO:GO:0000398 GO:GO:0017069 eggNOG:NOG317159 PANTHER:PTHR10501
HSSP:P09012 KO:K11094 RefSeq:XP_636725.1 ProteinModelPortal:Q54J05
STRING:Q54J05 EnsemblProtists:DDB0233135 GeneID:8626602
KEGG:ddi:DDB_G0288391 OMA:IFGQFPG ProtClustDB:CLSZ2429888
Uniprot:Q54J05
Length = 241
Score = 456 (165.6 bits), Expect = 3.5e-43, P = 3.5e-43
Identities = 94/235 (40%), Positives = 131/235 (55%)
Query: 3 TGDIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
+ DIPPNQT+Y L LFS+YG I ++V K+ K+RGQA++VF ++
Sbjct: 5 SADIPPNQTLYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQAFIVFKDI 64
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXXXX 122
T+ASNA+R+M F F D+PM+IQY KSKSD V+K DG+++
Sbjct: 65 TSASNALREMNGFNFLDRPMKIQYCKSKSDAVSKLDGTYMEKKREREENDKKGSNKKQDR 124
Query: 123 XXXSSMAN-----GTGAQSNGGTAASFRNANTQ---ETAAPNNILFIQNLPHETTSSMLE 174
G + T+ + N PN LF++NLP + S ML
Sbjct: 125 KSTGQQQQQQKRPGAPTSTTSTTSPTTSNGTVSLQPRDDPPNKTLFVENLPDKCDSMMLS 184
Query: 175 MLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
MLF Q+ GFKEV M+E+K GIAF+EFED+++S AM LQ FK+TP+ PM ++FA
Sbjct: 185 MLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMTNLQHFKVTPEKPMVVSFA 239
>WB|WBGene00004385 [details] [associations]
symbol:rnp-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0016246 "RNA interference" evidence=IMP]
[GO:0042127 "regulation of cell proliferation" evidence=IMP]
[GO:0040020 "regulation of meiosis" evidence=IMP] [GO:0009792
"embryo development ending in birth or egg hatching" evidence=IMP]
[GO:0007281 "germ cell development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0009792
GO:GO:0016246 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0042127
GO:GO:0007281 GO:GO:0000398 GO:GO:0040020 GO:GO:0017069
eggNOG:NOG317159 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
HSSP:P09012 HOGENOM:HOG000217519 OMA:ATNAMRT EMBL:FO081596
PIR:T29387 RefSeq:NP_500504.1 ProteinModelPortal:Q21322 SMR:Q21322
STRING:Q21322 PaxDb:Q21322 EnsemblMetazoa:K08D10.4 GeneID:177181
KEGG:cel:CELE_K08D10.4 UCSC:K08D10.4 CTD:177181 WormBase:K08D10.4
InParanoid:Q21322 NextBio:895684 Uniprot:Q21322
Length = 206
Score = 216 (81.1 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 41/98 (41%), Positives = 60/98 (61%)
Query: 5 DIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ PN T+Y +SL +F Q+G I V+ +T K+RGQA V+F E+ A
Sbjct: 3 EVAPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELPA 62
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
AS A + FPFY+KPMRIQ+A+ SD VA+E G+++
Sbjct: 63 ASAAREALNGFPFYEKPMRIQFAREDSDVVAQEKGTYI 100
Score = 196 (74.1 bits), Expect = 8.2e-37, Sum P(2) = 8.2e-37
Identities = 37/79 (46%), Positives = 52/79 (65%)
Query: 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQA 212
A PN ILF NLP T+ MLE++F Q+ G K++RM+ +PGIAFVEF+ D + A
Sbjct: 128 APPNKILFCTNLPDSATAEMLEIMFNQFAGLKDIRMVPNRPGIAFVEFDTDSLAIPARTT 187
Query: 213 LQGFKITPQNPMAITFAKK 231
L FKI+ ++ M + +AKK
Sbjct: 188 LNNFKISAEHTMRVDYAKK 206
>WB|WBGene00004386 [details] [associations]
symbol:rnp-3 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0017069 "snRNA
binding" evidence=IEA] [GO:0040007 "growth" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 85/230 (36%), Positives = 118/230 (51%)
Query: 5 DIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIY RSL+ +F+Q+G I +++ + K+RGQA +VF EV++
Sbjct: 3 DINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSS 62
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXXXXXX 124
ASNA+R +Q FPFY KPMRIQYA+ SD +++ G+FV
Sbjct: 63 ASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKIAKKPYEKPA---- 118
Query: 125 XSSMANGTGAQSNGGTAASFRNANTQET---AAPNNILFIQNLPHETTSSMLEMLFQQYP 181
NG +AA QET PNNILF N+P T ++ +F Q+P
Sbjct: 119 -----------KNGKSAAEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFP 167
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G +EVR + AF+E+E + S A QAL F+ITP + + FA K
Sbjct: 168 GLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 217
>UNIPROTKB|Q21323 [details] [associations]
symbol:rnp-3 "Protein RNP-3" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0040007
GO:GO:0002119 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 eggNOG:NOG317159 GeneTree:ENSGT00390000007046
PANTHER:PTHR10501 HSSP:P09012 HOGENOM:HOG000217519 OMA:TTANKKP
EMBL:FO081596 PIR:T29388 RefSeq:NP_500505.1
ProteinModelPortal:Q21323 SMR:Q21323 IntAct:Q21323 STRING:Q21323
PaxDb:Q21323 EnsemblMetazoa:K08D10.3 GeneID:177182
KEGG:cel:CELE_K08D10.3 UCSC:K08D10.3 CTD:177182 WormBase:K08D10.3
InParanoid:Q21323 NextBio:895688 Uniprot:Q21323
Length = 217
Score = 374 (136.7 bits), Expect = 1.7e-34, P = 1.7e-34
Identities = 85/230 (36%), Positives = 118/230 (51%)
Query: 5 DIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIY RSL+ +F+Q+G I +++ + K+RGQA +VF EV++
Sbjct: 3 DINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVSS 62
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXXXXXXXXXXXX 124
ASNA+R +Q FPFY KPMRIQYA+ SD +++ G+FV
Sbjct: 63 ASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKIAKKPYEKPA---- 118
Query: 125 XSSMANGTGAQSNGGTAASFRNANTQET---AAPNNILFIQNLPHETTSSMLEMLFQQYP 181
NG +AA QET PNNILF N+P T ++ +F Q+P
Sbjct: 119 -----------KNGKSAAEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQFP 167
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G +EVR + AF+E+E + S A QAL F+ITP + + FA K
Sbjct: 168 GLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 217
>POMBASE|SPBC4B4.07c [details] [associations]
symbol:usp102 "U1 snRNP-associated protein Usp102"
species:4896 "Schizosaccharomyces pombe" [GO:0000395 "mRNA
5'-splice site recognition" evidence=IC] [GO:0003723 "RNA binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IDA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005685 "U1 snRNP"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0017069
"snRNA binding" evidence=IEA] [GO:0045292 "mRNA cis splicing, via
spliceosome" evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC4B4.07c GO:GO:0005730 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GenomeReviews:CU329671_GR GO:GO:0005681
GO:GO:0003723 GO:GO:0017069 GO:GO:0005685 GO:GO:0000395
eggNOG:NOG317159 PANTHER:PTHR10501 HSSP:P08579 HOGENOM:HOG000217519
PIR:T40479 RefSeq:NP_596424.1 ProteinModelPortal:O74968
STRING:O74968 EnsemblFungi:SPBC4B4.07c.1 GeneID:2540865
KEGG:spo:SPBC4B4.07c OMA:SFVEFEN OrthoDB:EOG4TB7MX NextBio:20801981
Uniprot:O74968
Length = 249
Score = 195 (73.7 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 38/91 (41%), Positives = 55/91 (60%)
Query: 8 PNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P++T+Y R L LF YG++ DV A KT ++RGQA+VVF + AS
Sbjct: 24 PSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASR 83
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKED 98
A++ +Q +P Y KPM IQY+KSKSD + + +
Sbjct: 84 ALKDLQGYPLYGKPMMIQYSKSKSDIIVQRE 114
Score = 170 (64.9 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
Identities = 30/90 (33%), Positives = 56/90 (62%)
Query: 142 ASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFE 201
A ++ ++ PN +L +QN+P E + +L +F+ + GF+EVRM+ + GIAFVE++
Sbjct: 159 AERKSTINEDLLPPNKVLLLQNIPQEVNADVLTQIFEAFSGFQEVRMVPGRRGIAFVEYD 218
Query: 202 DDVQSSMAMQALQGFKITPQNPMAITFAKK 231
D ++++A G ++ N + +TFA+K
Sbjct: 219 SDREATVAKNGTTGMSLSG-NQIKVTFARK 247
>ASPGD|ASPL0000053720 [details] [associations]
symbol:AN0109 species:162425 "Emericella nidulans"
[GO:0005685 "U1 snRNP" evidence=IEA] [GO:0005730 "nucleolus"
evidence=IEA] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 EMBL:BN001308 Gene3D:3.30.70.330
GO:GO:0030529 GO:GO:0000398 EMBL:AACD01000004 GO:GO:0017069
eggNOG:NOG317159 PANTHER:PTHR10501 HOGENOM:HOG000217519 OMA:ATNAMRT
OrthoDB:EOG4TB7MX RefSeq:XP_657713.1 ProteinModelPortal:Q5BH71
STRING:Q5BH71 EnsemblFungi:CADANIAT00002640 GeneID:2875883
KEGG:ani:AN0109.2 Uniprot:Q5BH71
Length = 252
Score = 187 (70.9 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 34/98 (34%), Positives = 57/98 (58%)
Query: 2 ITGDIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61
+ +IPPN T+Y +L +FS+YG I ++VA + K +GQA++VF
Sbjct: 6 VPSNIPPNPTVYVRNLEERIKLDQLKEALSEIFSEYGTILEIVAKRNLKAKGQAFIVFDN 65
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDG 99
V +A+ A+ ++ F +DKPM + YAK++SD + +G
Sbjct: 66 VDSATRAIDEVNGFDLFDKPMVLDYAKTRSDATVRREG 103
Score = 160 (61.4 bits), Expect = 5.3e-30, Sum P(2) = 5.3e-30
Identities = 34/104 (32%), Positives = 57/104 (54%)
Query: 129 ANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM 188
A G G + G AA+ E PN ILF++ LP L +F ++ GF+EVR+
Sbjct: 152 AKGAGLKPTSGAAAA---VIPDEYLPPNKILFLRELPDTADQGSLTAVFGRFEGFREVRL 208
Query: 189 IEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITFAKK 231
+ + GIAFVE+E++ + A +A G + P+ P+ +T+ ++
Sbjct: 209 VPGRKGIAFVEYENESGAISAKEATSGMPMGPEGKPIRVTYQRQ 252
>GENEDB_PFALCIPARUM|MAL13P1.35 [details] [associations]
symbol:MAL13P1.35 "u1 small nuclear
ribonucleoprotein a, putative" species:5833 "Plasmodium falciparum"
[GO:0000398 "mRNA splicing, via spliceosome" evidence=ISS]
[GO:0005681 "spliceosomal complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529
GO:GO:0000398 GO:GO:0017069 EMBL:AL844509 PANTHER:PTHR10501
RefSeq:XP_002809001.1 ProteinModelPortal:C0H5A4
EnsemblProtists:MAL13P1.35:mRNA GeneID:813918 KEGG:pfa:MAL13P1.35
EuPathDB:PlasmoDB:PF3D7_1306900 ProtClustDB:CLSZ2433056
Uniprot:C0H5A4
Length = 449
Score = 178 (67.7 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 35/97 (36%), Positives = 57/97 (58%)
Query: 6 IPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN+T+Y ++L LF+ YG I D++ +K+ +GQAWVV+ + A
Sbjct: 171 IPPNETLYIKNLNDRVKTDEMKKNLKDLFNTYGEIKDLIVMKSFWRKGQAWVVYDDKECA 230
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
+ A+ +Q + + K M+I ++ +KSD AK DG+FV
Sbjct: 231 TKALNALQGYVLFGKIMQINFSHNKSDIHAKRDGTFV 267
Score = 125 (49.1 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 25/77 (32%), Positives = 46/77 (59%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
P ILF++N+ + LF+ Y GF E R+I + +AFV+F D+ ++ AM+A+Q
Sbjct: 375 PYKILFVENVVENVDTQAFNDLFKNYAGFVEARIIPQR-NVAFVDFTDETTATFAMKAVQ 433
Query: 215 GFKITPQNPMAITFAKK 231
+++ + I++AK+
Sbjct: 434 NYELQGSK-LKISYAKR 449
>UNIPROTKB|C0H5A4 [details] [associations]
symbol:MAL13P1.35 "U1 small nuclear ribonucleoprotein a,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0000398
"mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529
GO:GO:0000398 GO:GO:0017069 EMBL:AL844509 PANTHER:PTHR10501
RefSeq:XP_002809001.1 ProteinModelPortal:C0H5A4
EnsemblProtists:MAL13P1.35:mRNA GeneID:813918 KEGG:pfa:MAL13P1.35
EuPathDB:PlasmoDB:PF3D7_1306900 ProtClustDB:CLSZ2433056
Uniprot:C0H5A4
Length = 449
Score = 178 (67.7 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 35/97 (36%), Positives = 57/97 (58%)
Query: 6 IPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN+T+Y ++L LF+ YG I D++ +K+ +GQAWVV+ + A
Sbjct: 171 IPPNETLYIKNLNDRVKTDEMKKNLKDLFNTYGEIKDLIVMKSFWRKGQAWVVYDDKECA 230
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
+ A+ +Q + + K M+I ++ +KSD AK DG+FV
Sbjct: 231 TKALNALQGYVLFGKIMQINFSHNKSDIHAKRDGTFV 267
Score = 125 (49.1 bits), Expect = 7.9e-24, Sum P(2) = 7.9e-24
Identities = 25/77 (32%), Positives = 46/77 (59%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
P ILF++N+ + LF+ Y GF E R+I + +AFV+F D+ ++ AM+A+Q
Sbjct: 375 PYKILFVENVVENVDTQAFNDLFKNYAGFVEARIIPQR-NVAFVDFTDETTATFAMKAVQ 433
Query: 215 GFKITPQNPMAITFAKK 231
+++ + I++AK+
Sbjct: 434 NYELQGSK-LKISYAKR 449
>UNIPROTKB|G4MSP6 [details] [associations]
symbol:MGG_07085 "Small nuclear ribonucleoprotein U1a"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398
EMBL:CM001232 GO:GO:0017069 PANTHER:PTHR10501 RefSeq:XP_003715274.1
ProteinModelPortal:G4MSP6 EnsemblFungi:MGG_07085T0 GeneID:2682970
KEGG:mgr:MGG_07085 Uniprot:G4MSP6
Length = 234
Score = 265 (98.3 bits), Expect = 6.1e-23, P = 6.1e-23
Identities = 64/232 (27%), Positives = 108/232 (46%)
Query: 8 PNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y +L +FS+YG I D+VA K +GQA+VVF + +A
Sbjct: 5 PIATVYVRNLEERVKPDVLKETLTTIFSEYGNIIDIVAKTNLKAKGQAFVVFDDPASAQR 64
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPXXXXXXXXXXX-----XXXXXXXX 122
A+ ++Q F +DKP+ + A+++SD K +GS
Sbjct: 65 AIEEVQGFEIFDKPIHLALARTRSDATVKANGSEEDLEAHKRRRVAEMDKKKAAEAAAAQ 124
Query: 123 XXXSSMAN--GTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
AN G G ++ G A+ E PN ILF+Q+LP + L +F ++
Sbjct: 125 TQLKDRANKPGRGLKATGPAGAA--PTVPDEYLPPNKILFVQHLPEDFDVEKLTTVFGRF 182
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITFAKK 231
GF+EVR++ + GIAFVE++ + + A + G + + P+ +T+ ++
Sbjct: 183 DGFREVRLVPGRRGIAFVEYDGEAGAIAAKENTAGMPLGAEGKPVKVTYQRQ 234
>UNIPROTKB|J9NXJ9 [details] [associations]
symbol:SNRPA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0017069 "snRNA binding" evidence=IEA]
[GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
EMBL:AAEX03005528 Ensembl:ENSCAFT00000048760 Uniprot:J9NXJ9
Length = 165
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 48/95 (50%), Positives = 65/95 (68%)
Query: 8 PNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIY +SLY +FSQ+G+I ++ ++ K+RGQA+V+F EV+ A+N
Sbjct: 27 PNHTIYINSLNEKIKKDELKKSLYAIFSQFGQILHILVSRSLKMRGQAFVIFKEVSRATN 86
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+R MQ FPFYDKPM IQYAK+ SD +AK G+FV
Sbjct: 87 ALRSMQGFPFYDKPMSIQYAKTDSDIIAKMKGTFV 121
>UNIPROTKB|F1PFC6 [details] [associations]
symbol:SNRPA "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005681 "spliceosomal complex" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR012677 InterPro:IPR024888
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0000398
GO:GO:0017069 GeneTree:ENSGT00390000007046 PANTHER:PTHR10501
EMBL:AAEX03000940 Ensembl:ENSCAFT00000008192 OMA:QAPRIMY
Uniprot:F1PFC6
Length = 177
Score = 165 (63.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 32/52 (61%), Positives = 42/52 (80%)
Query: 51 LRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
+RGQA+V+F EV++A+NA+R MQ FPFYDKPM YAK+ SD +AK G+FV
Sbjct: 1 MRGQAFVIFKEVSSATNALRSMQGFPFYDKPM---YAKTDSDIIAKMKGTFV 49
Score = 83 (34.3 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 16/25 (64%), Positives = 18/25 (72%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQ 179
PN+ILF+ NLP ET ML MLF Q
Sbjct: 153 PNHILFLTNLPEETNELMLSMLFNQ 177
>CGD|CAL0004764 [details] [associations]
symbol:orf19.7375 species:5476 "Candida albicans" [GO:0000398
"mRNA splicing, via spliceosome" evidence=IEA;ISO] [GO:0030619 "U1
snRNA binding" evidence=IEA;ISO] [GO:0005685 "U1 snRNP"
evidence=IEA;ISO] [GO:0071004 "U2-type prespliceosome"
evidence=IEA] [GO:0005730 "nucleolus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0004764
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AACQ01000066 GO:GO:0000398
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501 GO:GO:0030619
HOGENOM:HOG000217519 RefSeq:XP_716616.1 ProteinModelPortal:Q5A4F9
STRING:Q5A4F9 GeneID:3641744 KEGG:cal:CaO19.7375 Uniprot:Q5A4F9
Length = 204
Score = 145 (56.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 8 PNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P QTIY L F+ G+I + ALKT KL+GQA++ F ++ +A+
Sbjct: 4 PRQTIYVNNLNEKVSINKLKNELQQTFNVCGKILQISALKTLKLKGQAFITFEDIPSATK 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKED 98
A+ ++ + KPM + YAKS +D ++ +D
Sbjct: 64 AL-ELNKKDLFSKPMNVTYAKSDADVISTDD 93
Score = 103 (41.3 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFE-DDVQSSMAMQAL 213
PN+IL IQNL E L++ F+++ GF VR+++ K +AF+EFE +D+ S Q
Sbjct: 131 PNHILLIQNL--EKFDD-LKIYFEKFAGFDNVRLVKVK-NLAFIEFESEDLAKSCLDQTT 186
Query: 214 QGFKITPQNPMAITFAKK 231
+ + + ++FAKK
Sbjct: 187 EDDLKQFGHDVILSFAKK 204
>UNIPROTKB|Q5A4F9 [details] [associations]
symbol:USA1 "Putative uncharacterized protein USA1"
species:237561 "Candida albicans SC5314" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005685 "U1 snRNP"
evidence=ISO] [GO:0030619 "U1 snRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 CGD:CAL0004764
GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AACQ01000066 GO:GO:0000398
GO:GO:0005685 eggNOG:NOG317159 PANTHER:PTHR10501 GO:GO:0030619
HOGENOM:HOG000217519 RefSeq:XP_716616.1 ProteinModelPortal:Q5A4F9
STRING:Q5A4F9 GeneID:3641744 KEGG:cal:CaO19.7375 Uniprot:Q5A4F9
Length = 204
Score = 145 (56.1 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 30/91 (32%), Positives = 49/91 (53%)
Query: 8 PNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P QTIY L F+ G+I + ALKT KL+GQA++ F ++ +A+
Sbjct: 4 PRQTIYVNNLNEKVSINKLKNELQQTFNVCGKILQISALKTLKLKGQAFITFEDIPSATK 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKED 98
A+ ++ + KPM + YAKS +D ++ +D
Sbjct: 64 AL-ELNKKDLFSKPMNVTYAKSDADVISTDD 93
Score = 103 (41.3 bits), Expect = 1.2e-19, Sum P(2) = 1.2e-19
Identities = 28/78 (35%), Positives = 46/78 (58%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFE-DDVQSSMAMQAL 213
PN+IL IQNL E L++ F+++ GF VR+++ K +AF+EFE +D+ S Q
Sbjct: 131 PNHILLIQNL--EKFDD-LKIYFEKFAGFDNVRLVKVK-NLAFIEFESEDLAKSCLDQTT 186
Query: 214 QGFKITPQNPMAITFAKK 231
+ + + ++FAKK
Sbjct: 187 EDDLKQFGHDVILSFAKK 204
>ASPGD|ASPL0000027676 [details] [associations]
symbol:AN5779 species:162425 "Emericella nidulans"
[GO:0005575 "cellular_component" evidence=ND] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0017069 "snRNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
EMBL:BN001305 GO:GO:0030529 GO:GO:0000398 GO:GO:0017069
PANTHER:PTHR10501 ProteinModelPortal:C8VFF2
EnsemblFungi:CADANIAT00003274 HOGENOM:HOG000181731 OMA:DIQTATQ
Uniprot:C8VFF2
Length = 188
Score = 224 (83.9 bits), Expect = 1.4e-18, P = 1.4e-18
Identities = 43/95 (45%), Positives = 61/95 (64%)
Query: 8 PNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y +LY LFS YG + D+VA+KT K+RGQA VVF ++ A++
Sbjct: 19 PNQTLYCTNLPDKLRKYDLRLALYTLFSTYGTVLDIVAMKTEKMRGQAHVVFKDIQASTQ 78
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+R +Q F F+ KPM+I YAK SD +A+ G++V
Sbjct: 79 AMRALQGFEFFGKPMKIVYAKGSSDVIARLRGTYV 113
>UNIPROTKB|G4MYZ3 [details] [associations]
symbol:MGG_04351 "U2 small nuclear ribonucleoprotein B"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0030529 GO:GO:0000398 EMBL:CM001232
GO:GO:0017069 PANTHER:PTHR10501 RefSeq:XP_003713461.1
ProteinModelPortal:G4MYZ3 EnsemblFungi:MGG_04351T0 GeneID:2677780
KEGG:mgr:MGG_04351 Uniprot:G4MYZ3
Length = 207
Score = 215 (80.7 bits), Expect = 1.2e-17, P = 1.2e-17
Identities = 43/98 (43%), Positives = 62/98 (63%)
Query: 6 IPPNQTIYXXXXXXXXXXXXXXR--SLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
IPPNQT+Y +LY LFS YG + DVV LKT K+RGQA +VF ++
Sbjct: 24 IPPNQTLYVRNIRSDKGYQKQDMRTALYMLFSTYGPLLDVVVLKTMKMRGQAHIVFRDIH 83
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A++ A+R + F F+ ++I+YAK+KS+ +AK DG+F
Sbjct: 84 ASTQAMRSLDGFDFFGSKLKIEYAKTKSNTIAKLDGTF 121
>POMBASE|SPBC8D2.09c [details] [associations]
symbol:msl1 "U2 snRNP-associated protein Msl1
(predicted)" species:4896 "Schizosaccharomyces pombe" [GO:0005634
"nucleus" evidence=IDA] [GO:0005681 "spliceosomal complex"
evidence=NAS] [GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829
"cytosol" evidence=IDA] [GO:0030620 "U2 snRNA binding"
evidence=ISO] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISO] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360
PomBase:SPBC8D2.09c GO:GO:0005829 GO:GO:0000166 EMBL:CU329671
Gene3D:3.30.70.330 GO:GO:0005681 EMBL:AB004538 GO:GO:0005686
GO:GO:0045292 eggNOG:NOG317159 OrthoDB:EOG4TB7MM GO:GO:0030620
PANTHER:PTHR10501 PIR:T40754 RefSeq:NP_595571.1
ProteinModelPortal:Q7LL14 IntAct:Q7LL14 STRING:Q7LL14
EnsemblFungi:SPBC8D2.09c.1 GeneID:2541219 KEGG:spo:SPBC8D2.09c
OMA:LYLYCTQ NextBio:20802331 Uniprot:Q7LL14
Length = 111
Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
Identities = 41/89 (46%), Positives = 57/89 (64%)
Query: 9 NQ-TIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
NQ T+Y +LY LFS YG + D+VALKTPK+RGQA VVF + +AA+
Sbjct: 2 NQNTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAI 61
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAK 96
A++ ++NF F+ K M+IQYA SKS + +
Sbjct: 62 AMKALKNFIFFGKEMKIQYAHSKSKIIER 90
>CGD|CAL0004460 [details] [associations]
symbol:orf19.4748 species:5476 "Candida albicans" [GO:0030620
"U2 snRNA binding" evidence=IEA;ISO] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA;ISO] [GO:0005686 "U2 snRNP"
evidence=ISO] [GO:0071004 "U2-type prespliceosome" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004460 GO:GO:0000166 Gene3D:3.30.70.330 EMBL:AACQ01000001
GO:GO:0000398 GO:GO:0005686 GO:GO:0030620 PANTHER:PTHR10501
RefSeq:XP_723434.1 ProteinModelPortal:Q5AQ60 STRING:Q5AQ60
GeneID:3634924 KEGG:cal:CaO19.4748 Uniprot:Q5AQ60
Length = 131
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 27/93 (29%), Positives = 53/93 (56%)
Query: 5 DIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ P+QT+Y +LY LFS +G D++++ G A+++FS + +
Sbjct: 27 NLKPSQTLYVKNLNTKINKKILLHNLYLLFSAFG---DIISINLQN--GFAFIIFSNLNS 81
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKE 97
A+ A+R ++N F+DKP+ + YA +S +++E
Sbjct: 82 ATLALRNLKNQDFFDKPLVLNYAVKESKAISQE 114
>UNIPROTKB|Q5AQ60 [details] [associations]
symbol:MSL1 "Putative uncharacterized protein MSL1"
species:237561 "Candida albicans SC5314" [GO:0000398 "mRNA
splicing, via spliceosome" evidence=ISO] [GO:0005686 "U2 snRNP"
evidence=ISO] [GO:0030620 "U2 snRNA binding" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 InterPro:IPR024888
PROSITE:PS50102 SMART:SM00360 CGD:CAL0004460 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AACQ01000001 GO:GO:0000398 GO:GO:0005686
GO:GO:0030620 PANTHER:PTHR10501 RefSeq:XP_723434.1
ProteinModelPortal:Q5AQ60 STRING:Q5AQ60 GeneID:3634924
KEGG:cal:CaO19.4748 Uniprot:Q5AQ60
Length = 131
Score = 132 (51.5 bits), Expect = 7.6e-09, P = 7.6e-09
Identities = 27/93 (29%), Positives = 53/93 (56%)
Query: 5 DIPPNQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ P+QT+Y +LY LFS +G D++++ G A+++FS + +
Sbjct: 27 NLKPSQTLYVKNLNTKINKKILLHNLYLLFSAFG---DIISINLQN--GFAFIIFSNLNS 81
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKE 97
A+ A+R ++N F+DKP+ + YA +S +++E
Sbjct: 82 ATLALRNLKNQDFFDKPLVLNYAVKESKAISQE 114
>TAIR|locus:2177033 [details] [associations]
symbol:AT5G12190 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=ISM] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 EMBL:CP002688 GenomeReviews:BA000015_GR GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 EMBL:AB007727 HOGENOM:HOG000276232 EMBL:BT002829
EMBL:BT004430 EMBL:AY088716 IPI:IPI00520700 RefSeq:NP_196780.1
UniGene:At.32166 ProteinModelPortal:Q9FMP4 SMR:Q9FMP4 IntAct:Q9FMP4
STRING:Q9FMP4 PaxDb:Q9FMP4 PRIDE:Q9FMP4 EnsemblPlants:AT5G12190.1
GeneID:831092 KEGG:ath:AT5G12190 TAIR:At5g12190 InParanoid:Q9FMP4
KO:K12833 OMA:YQSTKAF PhylomeDB:Q9FMP4 ProtClustDB:CLSN2686825
Genevestigator:Q9FMP4 GermOnline:AT5G12190 Uniprot:Q9FMP4
Length = 124
Score = 119 (46.9 bits), Expect = 1.8e-07, P = 1.8e-07
Identities = 26/81 (32%), Positives = 44/81 (54%)
Query: 140 TAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAF 197
T S R +NT+ N +L+++NLP TS + +F +Y +++R+ +A G AF
Sbjct: 2 TTISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAF 61
Query: 198 VEFEDDVQSSMAMQALQGFKI 218
V +ED + A+ L GF +
Sbjct: 62 VVYEDIYDAKNAVDHLSGFNV 82
>TAIR|locus:2079502 [details] [associations]
symbol:RS31 "arginine/serine-rich splicing factor 31"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0016607 "nuclear speck" evidence=IDA]
[GO:0008380 "RNA splicing" evidence=NAS] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IDA;RCA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0030422 "production of siRNA involved in RNA interference"
evidence=RCA] [GO:0035196 "production of miRNAs involved in gene
silencing by miRNA" evidence=RCA] [GO:0043687 "post-translational
protein modification" evidence=RCA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=RCA]
[GO:0005681 "spliceosomal complex" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166 GO:GO:0016607
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0000398
EMBL:AL138642 HOGENOM:HOG000276234 KO:K12893 EMBL:X99435
EMBL:AF439831 EMBL:AY125565 IPI:IPI00530595 PIR:T47978 PIR:T51304
RefSeq:NP_567120.1 UniGene:At.24231 ProteinModelPortal:P92964
SMR:P92964 IntAct:P92964 STRING:P92964 PaxDb:P92964 PRIDE:P92964
EnsemblPlants:AT3G61860.1 GeneID:825359 KEGG:ath:AT3G61860
TAIR:At3g61860 eggNOG:NOG277933 InParanoid:P92964 OMA:FEYETRQ
PhylomeDB:P92964 ProtClustDB:CLSN2917489 Genevestigator:P92964
GermOnline:AT3G61860 Uniprot:P92964
Length = 264
Score = 94 (38.1 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 23/60 (38%), Positives = 39/60 (65%)
Query: 33 LFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPF-YDKP-MRIQYAKSK 90
LF +YGR+ D V +K+ G A+V F + A +A+R++ NFPF Y+K + +++AK +
Sbjct: 21 LFDKYGRV-DRVDMKS----GYAFVYFEDERDAEDAIRKLDNFPFGYEKRRLSVEWAKGE 75
Score = 72 (30.4 bits), Expect = 2.1e-06, Sum P(2) = 2.1e-06
Identities = 23/87 (26%), Positives = 40/87 (45%)
Query: 146 NANTQETAAPNNILFIQNL-PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDV 204
+A P LF+ N P T +E F+ Y VR+ + +FV+FE
Sbjct: 82 DAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRI---RRNFSFVQFETQE 138
Query: 205 QSSMAMQALQGFKITPQNPMAITFAKK 231
++ A++A Q KI + +++ +A K
Sbjct: 139 DATKALEATQRSKILDR-VVSVEYALK 164
>UNIPROTKB|G4MYV6 [details] [associations]
symbol:MGG_11418 "Nucleic acid-binding protein"
species:242507 "Magnaporthe oryzae 70-15" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:CM001232
RefSeq:XP_003713424.1 ProteinModelPortal:G4MYV6
EnsemblFungi:MGG_11418T0 GeneID:2676363 KEGG:mgr:MGG_11418
Uniprot:G4MYV6
Length = 279
Score = 106 (42.4 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 29/79 (36%), Positives = 46/79 (58%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----P-GIAFVE 199
R+A QE P + L+I N+P+E+T + L LFQ G K+VR+ + P G A +
Sbjct: 157 RDAMNQEERTPTSSLYIGNIPYESTDAALNNLFQDLEGLKDVRIAVDRSTGWPRGFAHAD 216
Query: 200 FEDDVQSSMAMQALQGFKI 218
F+D V+S A +A++ K+
Sbjct: 217 FKD-VES--ATKAVEKVKL 232
Score = 51 (23.0 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 15/43 (34%), Positives = 20/43 (46%)
Query: 34 FSQYGRIFDV-VALKTPKL-RGQAWVVFSEVTAASNAVRQMQN 74
FSQYG + D VA L +G ++ F AA A + N
Sbjct: 93 FSQYGNVVDAKVARDARGLSKGFGFIYFETPEAAQKACEEANN 135
>GENEDB_PFALCIPARUM|PF13_0122 [details] [associations]
symbol:PF13_0122 "cyclophilin, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 100 (40.3 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 28 RSLYCLFSQYGRIFDV-VALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84
+SLY +FS +G I ++ V L T K RG A+V + EV A +A+ M NF K + +
Sbjct: 22 KSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNMNNFELNGKRIHV 81
Query: 85 QYAKSK 90
Y+K+K
Sbjct: 82 NYSKTK 87
>UNIPROTKB|C0H5C7 [details] [associations]
symbol:PF13_0122 "RRM containing cyclophilin" species:36329
"Plasmodium falciparum 3D7" [GO:0000413 "protein peptidyl-prolyl
isomerization" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003755 "peptidyl-prolyl cis-trans isomerase
activity" evidence=ISS] [GO:0006457 "protein folding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0006457 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K01802 EMBL:AL844509 HOGENOM:HOG000276232
GO:GO:0003755 RefSeq:XP_002809024.1 ProteinModelPortal:C0H5C7
EnsemblProtists:PF13_0122:mRNA GeneID:814093 KEGG:pfa:PF13_0122
EuPathDB:PlasmoDB:PF3D7_1320900 ProtClustDB:CLSZ2433376
Uniprot:C0H5C7
Length = 125
Score = 100 (40.3 bits), Expect = 3.3e-05, P = 3.3e-05
Identities = 26/66 (39%), Positives = 39/66 (59%)
Query: 28 RSLYCLFSQYGRIFDV-VALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84
+SLY +FS +G I ++ V L T K RG A+V + EV A +A+ M NF K + +
Sbjct: 22 KSLYDIFSSFGDIRNIEVPLNMTTKKNRGFAFVEYVEVDDAKHALYNMNNFELNGKRIHV 81
Query: 85 QYAKSK 90
Y+K+K
Sbjct: 82 NYSKTK 87
>DICTYBASE|DDB_G0268988 [details] [associations]
symbol:DDB_G0268988 "RNA-binding region RNP-1
domain-containing protein" species:44689 "Dictyostelium discoideum"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0268988 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000004 eggNOG:NOG255497 RefSeq:XP_646953.2
ProteinModelPortal:Q55ER7 EnsemblProtists:DDB0233676 GeneID:8616643
KEGG:ddi:DDB_G0268988 OMA:EFATMAM Uniprot:Q55ER7
Length = 356
Score = 119 (46.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 25/66 (37%), Positives = 39/66 (59%)
Query: 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQA 212
A P+ +LF++++P + E LF+ PG+ M+ KP AFVEF+D ++MAM
Sbjct: 6 APPSRVLFVKDIPQRVSYDAFENLFKSLPGYL---MMRRKPHFAFVEFKDREFATMAMIK 62
Query: 213 LQGFKI 218
G+KI
Sbjct: 63 FTGYKI 68
Score = 119 (46.9 bits), Expect = 3.5e-05, P = 3.5e-05
Identities = 29/84 (34%), Positives = 46/84 (54%)
Query: 137 NGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI--EAKPG 194
+GG+A ++ T P + LF+ NLP + T L +LF+ GF +R+I E K
Sbjct: 253 HGGSALP-PQSSISTTGMPCSTLFVSNLPKDVTERELSILFRFMRGFVGIRLINKEGKLP 311
Query: 195 IAFVEFEDDVQSSMAMQALQGFKI 218
+ F +F D S A++ LQGF++
Sbjct: 312 MCFCDFIDTQSSMFALEFLQGFRM 335
>GENEDB_PFALCIPARUM|PFF0320c [details] [associations]
symbol:PFF0320c "polypyrimidine tract binding
protein, putative" species:5833 "Plasmodium falciparum" [GO:0008187
"poly-pyrimidine tract binding" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL844505 GO:GO:0008187 RefSeq:XP_966055.1
ProteinModelPortal:C6KSR3 EnsemblProtists:PFF0320c:mRNA
GeneID:3885785 KEGG:pfa:PFF0320c EuPathDB:PlasmoDB:PF3D7_0606500
HOGENOM:HOG000281449 OMA:DATENEI ProtClustDB:CLSZ2432274
Uniprot:C6KSR3
Length = 663
Score = 88 (36.0 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 144 FRNANTQETAAPNNILFIQNLPHETTS-SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFED 202
F N +T P +L N+P E T + L LF Y ++++ KP A +++ +
Sbjct: 456 FEKMNPSKT--P--VLICYNIPKEYTDVNKLFNLFSIYGFVTRIKILREKPDAALIQYSN 511
Query: 203 DVQSSMAMQALQGFKITPQNPMAITFAK 230
+ SS+A + LQ +I+ Q+ + + F+K
Sbjct: 512 YIFSSLAQEYLQRARISNQS-IEVNFSK 538
Score = 77 (32.2 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 30 LYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD--KPMRIQYA 87
+Y LFS+ G + ++ + QA V F V A A++ + N YD + IQY+
Sbjct: 334 IYYLFSKCGTVEKIITFSRNPVLYQALVQFDNVETAKEAIKTLHNRNIYDGCNTINIQYS 393
Query: 88 KSKSDCVAKEDGS 100
K + V K + S
Sbjct: 394 FLK-ELVIKGNNS 405
>UNIPROTKB|C6KSR3 [details] [associations]
symbol:PFF0320c "Polypyrimidine tract binding protein,
putative" species:36329 "Plasmodium falciparum 3D7" [GO:0008187
"poly-pyrimidine tract binding" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0008380 GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AL844505 GO:GO:0008187 RefSeq:XP_966055.1
ProteinModelPortal:C6KSR3 EnsemblProtists:PFF0320c:mRNA
GeneID:3885785 KEGG:pfa:PFF0320c EuPathDB:PlasmoDB:PF3D7_0606500
HOGENOM:HOG000281449 OMA:DATENEI ProtClustDB:CLSZ2432274
Uniprot:C6KSR3
Length = 663
Score = 88 (36.0 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 25/88 (28%), Positives = 46/88 (52%)
Query: 144 FRNANTQETAAPNNILFIQNLPHETTS-SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFED 202
F N +T P +L N+P E T + L LF Y ++++ KP A +++ +
Sbjct: 456 FEKMNPSKT--P--VLICYNIPKEYTDVNKLFNLFSIYGFVTRIKILREKPDAALIQYSN 511
Query: 203 DVQSSMAMQALQGFKITPQNPMAITFAK 230
+ SS+A + LQ +I+ Q+ + + F+K
Sbjct: 512 YIFSSLAQEYLQRARISNQS-IEVNFSK 538
Score = 77 (32.2 bits), Expect = 4.8e-05, Sum P(2) = 4.8e-05
Identities = 22/73 (30%), Positives = 35/73 (47%)
Query: 30 LYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD--KPMRIQYA 87
+Y LFS+ G + ++ + QA V F V A A++ + N YD + IQY+
Sbjct: 334 IYYLFSKCGTVEKIITFSRNPVLYQALVQFDNVETAKEAIKTLHNRNIYDGCNTINIQYS 393
Query: 88 KSKSDCVAKEDGS 100
K + V K + S
Sbjct: 394 FLK-ELVIKGNNS 405
>FB|FBgn0038826 [details] [associations]
symbol:Syp "Syncrip" species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS;IDA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0071011 "precatalytic
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0022008 "neurogenesis" evidence=IMP]
[GO:0046011 "regulation of oskar mRNA translation" evidence=IMP]
[GO:0007310 "oocyte dorsal/ventral axis specification"
evidence=IMP] [GO:0046843 "dorsal appendage formation"
evidence=IMP] [GO:0035770 "ribonucleoprotein granule" evidence=IDA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 EMBL:AE014297 GO:GO:0022008 GO:GO:0000166
GO:GO:0003729 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0071011
GO:GO:0000398 UniGene:Dm.11889 GeneID:42460 KEGG:dme:Dmel_CG17838
FlyBase:FBgn0038826 ChiTaRS:CG17838 GenomeRNAi:42460 NextBio:828899
RefSeq:NP_650913.2 ProteinModelPortal:Q7KSA0 SMR:Q7KSA0
STRING:Q7KSA0 EnsemblMetazoa:FBtr0083959 UCSC:CG17838-RB
InParanoid:Q7KSA0 OMA:QPLGTNG Bgee:Q7KSA0 Uniprot:Q7KSA0
Length = 711
Score = 93 (37.8 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 23/81 (28%), Positives = 44/81 (54%)
Query: 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMA 209
++T + +L+++NL + + L+ F+QY + V+ I+ AF+ FED + A
Sbjct: 333 EQTMSKVKVLYVRNLTQDVSEDKLKEQFEQYGKVERVKKIK---DYAFIHFEDRDSAVEA 389
Query: 210 MQALQGFKITPQNPMAITFAK 230
M+ L G +I N + ++ AK
Sbjct: 390 MRGLNGKEIGASN-IEVSLAK 409
Score = 71 (30.1 bits), Expect = 5.8e-05, Sum P(2) = 5.8e-05
Identities = 19/45 (42%), Positives = 25/45 (55%)
Query: 33 LFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQN 74
LF G I+D+ + P RG A+V F+ AA NAVRQ+ N
Sbjct: 183 LFENCGIIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQLDN 227
>DICTYBASE|DDB_G0290307 [details] [associations]
symbol:DDB_G0290307 "ELAVL1-like protein"
species:44689 "Dictyostelium discoideum" [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008150 "biological_process" evidence=ND]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0290307 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AAFI02000162 eggNOG:NOG256997 RefSeq:XP_635793.1
ProteinModelPortal:Q54G90 EnsemblProtists:DDB0233651 GeneID:8627598
KEGG:ddi:DDB_G0290307 InParanoid:Q54G90 OMA:SATNQCK Uniprot:Q54G90
Length = 459
Score = 89 (36.4 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 27/100 (27%), Positives = 45/100 (45%)
Query: 136 SNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI-----E 190
+N + + N E NN+ FI+ LP E + L LF Y E +++
Sbjct: 199 NNNNNSNNNNTNNIDEQKISNNV-FIRGLPIEFDKNQLSELFSAYGEVVESKLLIDITTN 257
Query: 191 AKPGIAFVEFEDDVQSSMAMQALQGFKIT-PQNPMAITFA 229
A G V + D + A+++L GF + P+ P+ + FA
Sbjct: 258 ASRGQGLVRYIDTQSAINAVKSLNGFILQDPEKPLIVRFA 297
Score = 68 (29.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 19/64 (29%), Positives = 32/64 (50%)
Query: 29 SLYCLFSQYGRIFD---VVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85
+L +FS +G I +V L T RG +V F +V +A A+ M +K + ++
Sbjct: 114 TLRSIFSAFGEIDSCRVMVDLNTGLSRGFGFVKFKDVASAQYAINSMNGAKVENKTLLVR 173
Query: 86 YAKS 89
+A S
Sbjct: 174 FANS 177
>UNIPROTKB|E1BW94 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 CTD:51639
EMBL:AADN02018477 IPI:IPI00572573 RefSeq:XP_419986.1
UniGene:Gga.2001 ProteinModelPortal:E1BW94 SMR:E1BW94 PRIDE:E1BW94
Ensembl:ENSGALT00000026618 GeneID:421976 KEGG:gga:421976
NextBio:20824670 Uniprot:E1BW94
Length = 125
Score = 95 (38.5 bits), Expect = 0.00013, P = 0.00013
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKI 218
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNV 82
>UNIPROTKB|Q2KIQ7 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005689 "U12-type spliceosomal complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0005689 KO:K12833 OMA:YQSTKAF
GeneTree:ENSGT00390000005908 CTD:51639 HOVERGEN:HBG039634
OrthoDB:EOG4X0MTT EMBL:DAAA02031677 EMBL:BC112548 IPI:IPI00698072
RefSeq:NP_001039482.1 UniGene:Bt.45988 SMR:Q2KIQ7 STRING:Q2KIQ7
Ensembl:ENSBTAT00000004418 GeneID:508876 KEGG:bta:508876
InParanoid:Q2KIQ7 NextBio:20868714 Uniprot:Q2KIQ7
Length = 125
Score = 95 (38.5 bits), Expect = 0.00013, P = 0.00013
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKI 218
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNV 82
>UNIPROTKB|E2RRA3 [details] [associations]
symbol:SF3B14 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 CTD:51639
EMBL:AAEX03010780 RefSeq:XP_532889.1 ProteinModelPortal:E2RRA3
SMR:E2RRA3 PRIDE:E2RRA3 Ensembl:ENSCAFT00000006355 GeneID:475682
KEGG:cfa:475682 NextBio:20851470 Uniprot:E2RRA3
Length = 125
Score = 95 (38.5 bits), Expect = 0.00013, P = 0.00013
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKI 218
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNV 82
>UNIPROTKB|Q9Y3B4 [details] [associations]
symbol:SF3B14 "Pre-mRNA branch site protein p14"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005689
"U12-type spliceosomal complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467
"gene expression" evidence=TAS] Reactome:REACT_71
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0000166 Reactome:REACT_1675
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0000398 eggNOG:COG0724
HOGENOM:HOG000276232 GO:GO:0005689 KO:K12833 OMA:YQSTKAF
EMBL:AF401310 EMBL:AF151868 EMBL:AF161523 EMBL:AF184213
EMBL:BC015463 IPI:IPI00032827 RefSeq:NP_057131.1 UniGene:Hs.177861
PDB:2F9D PDB:2F9J PDB:2FHO PDB:3LQV PDBsum:2F9D PDBsum:2F9J
PDBsum:2FHO PDBsum:3LQV ProteinModelPortal:Q9Y3B4 SMR:Q9Y3B4
IntAct:Q9Y3B4 MINT:MINT-3085643 STRING:Q9Y3B4 PhosphoSite:Q9Y3B4
DMDM:12585536 PaxDb:Q9Y3B4 PeptideAtlas:Q9Y3B4 PRIDE:Q9Y3B4
DNASU:51639 GeneID:51639 KEGG:hsa:51639 UCSC:uc002rev.3 CTD:51639
GeneCards:GC02M024290 HPA:HPA034829 HPA:HPA034830 MIM:607835
neXtProt:NX_Q9Y3B4 HOVERGEN:HBG039634 InParanoid:Q9Y3B4
OrthoDB:EOG4X0MTT PhylomeDB:Q9Y3B4 EvolutionaryTrace:Q9Y3B4
GenomeRNAi:51639 NextBio:55577 ArrayExpress:Q9Y3B4 Bgee:Q9Y3B4
Genevestigator:Q9Y3B4 GermOnline:ENSG00000115128 Uniprot:Q9Y3B4
Length = 125
Score = 95 (38.5 bits), Expect = 0.00013, P = 0.00013
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKI 218
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNV 82
>UNIPROTKB|F2Z5F1 [details] [associations]
symbol:LOC100521960 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005689 "U12-type spliceosomal complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908 EMBL:CU928810
RefSeq:XP_003125412.1 ProteinModelPortal:F2Z5F1 SMR:F2Z5F1
PRIDE:F2Z5F1 Ensembl:ENSSSCT00000009397 GeneID:100521960
KEGG:ssc:100521960 Uniprot:F2Z5F1
Length = 125
Score = 95 (38.5 bits), Expect = 0.00013, P = 0.00013
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKI 218
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNV 82
>MGI|MGI:1913305 [details] [associations]
symbol:0610009D07Rik "RIKEN cDNA 0610009D07 gene"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003674 "molecular_function" evidence=ND]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005689 "U12-type spliceosomal complex" evidence=ISO]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 MGI:MGI:1913305
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOGENOM:HOG000276232 GO:GO:0005689
KO:K12833 OMA:YQSTKAF GeneTree:ENSGT00390000005908
HOVERGEN:HBG039634 OrthoDB:EOG4X0MTT EMBL:AK002375 EMBL:AK003683
EMBL:AK151648 EMBL:BC019535 IPI:IPI00117687 RefSeq:NP_079599.1
UniGene:Mm.102627 ProteinModelPortal:P59708 SMR:P59708
STRING:P59708 PhosphoSite:P59708 PaxDb:P59708 PRIDE:P59708
Ensembl:ENSMUST00000046207 GeneID:66055 KEGG:mmu:66055
UCSC:uc007myi.1 InParanoid:P59708 NextBio:320494 Bgee:P59708
CleanEx:MM_0610009D07RIK Genevestigator:P59708
GermOnline:ENSMUSG00000037361 Uniprot:P59708
Length = 125
Score = 95 (38.5 bits), Expect = 0.00013, P = 0.00013
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKI 218
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNV 82
>ZFIN|ZDB-GENE-040625-36 [details] [associations]
symbol:sf3b14 "splicing factor 3B" species:7955
"Danio rerio" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-040625-36 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 HOGENOM:HOG000276232 KO:K12833
OMA:YQSTKAF GeneTree:ENSGT00390000005908 CTD:51639
HOVERGEN:HBG039634 OrthoDB:EOG4X0MTT EMBL:BX510920 EMBL:BC071385
IPI:IPI00495681 RefSeq:NP_001002067.1 UniGene:Dr.3658 SMR:Q6IQM0
STRING:Q6IQM0 Ensembl:ENSDART00000017485 GeneID:415157
KEGG:dre:415157 InParanoid:Q6IQM0 NextBio:20818830 Uniprot:Q6IQM0
Length = 125
Score = 95 (38.5 bits), Expect = 0.00013, P = 0.00013
Identities = 22/76 (28%), Positives = 40/76 (52%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKI 218
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNV 82
>SGD|S000001448 [details] [associations]
symbol:MSL1 "U2B component of U2 snRNP" species:4932
"Saccharomyces cerevisiae" [GO:0005686 "U2 snRNP" evidence=TAS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000398 "mRNA splicing,
via spliceosome" evidence=IEA;ISS;IMP;IPI] [GO:0030620 "U2 snRNA
binding" evidence=IPI] [GO:0071004 "U2-type prespliceosome"
evidence=IDA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0017069 "snRNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
InterPro:IPR024888 PROSITE:PS50102 SMART:SM00360 SGD:S000001448
GO:GO:0000166 EMBL:BK006942 Gene3D:3.30.70.330 EMBL:X79743
GO:GO:0000398 GO:GO:0005686 GO:GO:0071004 EMBL:Z37996 EMBL:AY558237
PIR:S48353 RefSeq:NP_012274.1 ProteinModelPortal:P40567 SMR:P40567
DIP:DIP-816N IntAct:P40567 MINT:MINT-572508 STRING:P40567
PaxDb:P40567 EnsemblFungi:YIR009W GeneID:854826 KEGG:sce:YIR009W
CYGD:YIR009w eggNOG:NOG317159 GeneTree:ENSGT00390000007046
HOGENOM:HOG000000973 OrthoDB:EOG4TB7MM NextBio:977683
Genevestigator:P40567 GermOnline:YIR009W GO:GO:0030620
PANTHER:PTHR10501 Uniprot:P40567
Length = 111
Score = 94 (38.1 bits), Expect = 0.00016, P = 0.00016
Identities = 18/63 (28%), Positives = 38/63 (60%)
Query: 29 SLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAK 88
+L+ LF+ +G + V ++ K RGQA++ + AS A + F+ KP++++++K
Sbjct: 47 NLFLLFATFGEVLKV-SMNFKKQRGQAFITMRTIDQASLAQISLNGERFFGKPLKVEFSK 105
Query: 89 SKS 91
S++
Sbjct: 106 SET 108
>DICTYBASE|DDB_G0270436 [details] [associations]
symbol:DDB_G0270436 species:44689 "Dictyostelium
discoideum" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
dictyBase:DDB_G0270436 EMBL:AAFI02000005 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 eggNOG:COG0724 RefSeq:XP_646802.1
ProteinModelPortal:Q55BM9 EnsemblProtists:DDB0191059 GeneID:8617775
KEGG:ddi:DDB_G0270436 InParanoid:Q55BM9 OMA:DICNVFV
ProtClustDB:CLSZ2846937 Uniprot:Q55BM9
Length = 521
Score = 95 (38.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 26/99 (26%), Positives = 50/99 (50%)
Query: 136 SNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVR-MIEAKPG 194
SNGG S + T++ P+N L+++ L T ++L F Q+ E + +I+A G
Sbjct: 124 SNGGATTS--PSQTEQQRDPSNTLYVRVLSPTITDAILNSTFSQFGEVIEAQVLIDASSG 181
Query: 195 ----IAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
++F + S+ A+Q++ G I + P+ + +A
Sbjct: 182 KSKRAGVIKFSNIHYSTNALQSMSGSLILGETPLVVKYA 220
Score = 61 (26.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 18/64 (28%), Positives = 30/64 (46%)
Query: 28 RSLYCLFSQYGRIFD---VVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84
+ LY LF Q+G I + +V +KT G +V F A A++ M + K +
Sbjct: 35 KELYDLFEQFGEIVNTKVMVNIKTGNSLGYGFVRFLNPENACEAIKNMNRYQVGYKTLLC 94
Query: 85 QYAK 88
+ +K
Sbjct: 95 KLSK 98
>WB|WBGene00003172 [details] [associations]
symbol:mec-8 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0009792
"embryo development ending in birth or egg hatching"
evidence=IGI;IMP] [GO:0007638 "mechanosensory behavior"
evidence=IMP] [GO:0048666 "neuron development" evidence=IMP]
[GO:0002119 "nematode larval development" evidence=IMP] [GO:0048644
"muscle organ morphogenesis" evidence=IGI;IMP] [GO:0005634
"nucleus" evidence=IDA] [GO:0031581 "hemidesmosome assembly"
evidence=IGI] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0009792
GO:GO:0002119 GO:GO:0000166 GO:GO:0048644 Gene3D:3.30.70.330
GO:GO:0003676 GO:GO:0048666 EMBL:Z81037 GO:GO:0031581 GO:GO:0007638
HSSP:P09012 GeneTree:ENSGT00500000044861 EMBL:X95609 EMBL:Z81084
PIR:T19360 RefSeq:NP_492508.1 SMR:G5ECJ4 IntAct:G5ECJ4
EnsemblMetazoa:F46A9.6.1 EnsemblMetazoa:F46A9.6.2
EnsemblMetazoa:F46A9.6.3 GeneID:172771 KEGG:cel:CELE_F46A9.6
CTD:172771 WormBase:F46A9.6 OMA:APSANGH NextBio:876941
Uniprot:G5ECJ4
Length = 312
Score = 112 (44.5 bits), Expect = 0.00021, P = 0.00021
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 141 AASFRNAN--TQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG--IA 196
AAS +++ +Q + + + LF+ NL E L +F+ + GF +R+ K G +A
Sbjct: 210 AASLQHSQQASQASTSACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRL-HNKNGSCVA 268
Query: 197 FVEFEDDVQSSMAMQALQGFKIT 219
FVE+ D +++ AM +LQGF+IT
Sbjct: 269 FVEYSDLQKATQAMISLQGFQIT 291
>UNIPROTKB|G5ECJ4 [details] [associations]
symbol:mec-8 "Protein MEC-8" species:6239 "Caenorhabditis
elegans" [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005634 GO:GO:0009792 GO:GO:0002119
GO:GO:0000166 GO:GO:0048644 Gene3D:3.30.70.330 GO:GO:0003676
GO:GO:0048666 EMBL:Z81037 GO:GO:0031581 GO:GO:0007638 HSSP:P09012
GeneTree:ENSGT00500000044861 EMBL:X95609 EMBL:Z81084 PIR:T19360
RefSeq:NP_492508.1 SMR:G5ECJ4 IntAct:G5ECJ4
EnsemblMetazoa:F46A9.6.1 EnsemblMetazoa:F46A9.6.2
EnsemblMetazoa:F46A9.6.3 GeneID:172771 KEGG:cel:CELE_F46A9.6
CTD:172771 WormBase:F46A9.6 OMA:APSANGH NextBio:876941
Uniprot:G5ECJ4
Length = 312
Score = 112 (44.5 bits), Expect = 0.00021, P = 0.00021
Identities = 29/83 (34%), Positives = 49/83 (59%)
Query: 141 AASFRNAN--TQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG--IA 196
AAS +++ +Q + + + LF+ NL E L +F+ + GF +R+ K G +A
Sbjct: 210 AASLQHSQQASQASTSACSTLFVANLSAEVNEDTLRGVFKAFSGFTRLRL-HNKNGSCVA 268
Query: 197 FVEFEDDVQSSMAMQALQGFKIT 219
FVE+ D +++ AM +LQGF+IT
Sbjct: 269 FVEYSDLQKATQAMISLQGFQIT 291
>DICTYBASE|DDB_G0286297 [details] [associations]
symbol:DDB_G0286297 "putative splicing factor 3B 14
kDa subunit" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0286297 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000085 eggNOG:COG0724
KO:K12833 OMA:YQSTKAF RefSeq:XP_637842.1 ProteinModelPortal:Q54LY9
SMR:Q54LY9 STRING:Q54LY9 EnsemblProtists:DDB0233775 GeneID:8625556
KEGG:ddi:DDB_G0286297 InParanoid:Q54LY9 Uniprot:Q54LY9
Length = 117
Score = 93 (37.8 bits), Expect = 0.00021, P = 0.00021
Identities = 20/65 (30%), Positives = 35/65 (53%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQSSMAMQAL 213
N IL+++NLP + +S L +F Y +++R+ G AFV +ED + A + L
Sbjct: 15 NRILYVKNLPFKISSEELYGIFSNYGAIRQIRLGNTTETMGTAFVVYEDIFDARNACEHL 74
Query: 214 QGFKI 218
G+ +
Sbjct: 75 SGYNV 79
>ZFIN|ZDB-GENE-060824-3 [details] [associations]
symbol:a1cf "apobec1 complementation factor"
species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003725 "double-stranded RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR001159 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 PROSITE:PS50137 SMART:SM00360
InterPro:IPR014720 ZFIN:ZDB-GENE-060824-3 GO:GO:0000166
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 GO:GO:0005622
GO:GO:0003725 EMBL:BX248126 IPI:IPI00486366
Ensembl:ENSDART00000010358 Bgee:E7F6B7 Uniprot:E7F6B7
Length = 588
Score = 91 (37.1 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 27/82 (32%), Positives = 40/82 (48%)
Query: 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQY-PGFKEVRMIEAKPGIAFVEFEDDVQSSM 208
++T A IL+++NL TT +E F PG V ++ AFV F +
Sbjct: 224 EDTMATVKILYVRNLMLPTTEETIEKEFNSIKPG--AVERVKKIRDYAFVHFSQREDAIN 281
Query: 209 AMQALQGFKITPQNPMAITFAK 230
AM AL G K+ +P+ +T AK
Sbjct: 282 AMNALNG-KVIDGSPIEVTLAK 302
Score = 65 (27.9 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 15/45 (33%), Positives = 26/45 (57%)
Query: 33 LFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNF 75
L ++G+I++V + RG A+V FS A NA++Q+ N+
Sbjct: 75 LCEKFGKIYEVRMMMDFNGNNRGYAFVTFSTKQEAKNAMKQLNNY 119
>ZFIN|ZDB-GENE-050522-492 [details] [associations]
symbol:ptbp1a "polypyrimidine tract binding protein
1a" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0060472 "positive regulation of cortical granule exocytosis by
elevation of cytosolic calcium ion concentration" evidence=IMP]
[GO:0009953 "dorsal/ventral pattern formation" evidence=IMP]
[GO:0045746 "negative regulation of Notch signaling pathway"
evidence=IMP] [GO:0060729 "intestinal epithelial structure
maintenance" evidence=IMP] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
ZFIN:ZDB-GENE-050522-492 GO:GO:0005634 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0009953 GO:GO:0045746
TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508 HOVERGEN:HBG069548
KO:K13218 OMA:SEECAQT eggNOG:NOG263741 HOGENOM:HOG000231699
OrthoDB:EOG4GMTXQ GO:GO:0060729 EMBL:CR788230 EMBL:BC095372
IPI:IPI00607308 RefSeq:NP_001018313.1 UniGene:Dr.45492 SMR:Q503D3
Ensembl:ENSDART00000017668 GeneID:323490 KEGG:dre:323490 CTD:323490
InParanoid:Q503D3 NextBio:20808275 GO:GO:0060472 Uniprot:Q503D3
Length = 574
Score = 100 (40.3 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 29/94 (30%), Positives = 46/94 (48%)
Query: 126 SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL-PHETTSSMLEMLFQQYPGFK 184
+S++ A + AA+ R + TAA N++L + NL P T L +LF Y
Sbjct: 349 ASLSVPGAAAAAAAAAAAGRLGLSGLTAAGNSVLLVSNLNPESVTPQCLFILFGVYGDVM 408
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
V+++ K A V+ D Q+ +AM L G K+
Sbjct: 409 RVKILFNKKENALVQMSDGTQAQLAMSHLNGQKL 442
Score = 54 (24.1 bits), Expect = 0.00027, Sum P(2) = 0.00027
Identities = 16/64 (25%), Positives = 32/64 (50%)
Query: 30 LYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK--PMRIQYA 87
L+ +FS++G + ++ T + QA V +S+ A +A + Y+ +RI ++
Sbjct: 210 LHQIFSKFGTVLKIITF-TKNNQFQALVQYSDGMTAQHAKLSLDGQNIYNACCTLRISFS 268
Query: 88 KSKS 91
K S
Sbjct: 269 KLTS 272
>FB|FBgn0035692 [details] [associations]
symbol:CG13298 species:7227 "Drosophila melanogaster"
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0007052 "mitotic spindle organization"
evidence=IMP] [GO:0048812 "neuron projection morphogenesis"
evidence=IMP] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC] [GO:0071011 "precatalytic spliceosome" evidence=IDA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IDA]
[GO:0022008 "neurogenesis" evidence=IMP] [GO:0005686 "U2 snRNP"
evidence=IDA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE014296 GO:GO:0007052
GO:GO:0022008 GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0071011 GO:GO:0000398 GO:GO:0071013 eggNOG:COG0724 KO:K12833
OMA:YQSTKAF GeneTree:ENSGT00390000005908 EMBL:AY089603
RefSeq:NP_648037.1 UniGene:Dm.1519 ProteinModelPortal:Q9VRV7
SMR:Q9VRV7 DIP:DIP-21174N IntAct:Q9VRV7 MINT:MINT-921416
STRING:Q9VRV7 PaxDb:Q9VRV7 PRIDE:Q9VRV7 EnsemblMetazoa:FBtr0077015
GeneID:38720 KEGG:dme:Dmel_CG13298 UCSC:CG13298-RA
FlyBase:FBgn0035692 InParanoid:Q9VRV7 OrthoDB:EOG4DV43Q
PhylomeDB:Q9VRV7 GenomeRNAi:38720 NextBio:810039 Bgee:Q9VRV7
GermOnline:CG13298 Uniprot:Q9VRV7
Length = 121
Score = 92 (37.4 bits), Expect = 0.00028, P = 0.00028
Identities = 19/65 (29%), Positives = 36/65 (55%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQSSMAMQAL 213
N +L+++NLP++ TS + +F ++ +++R+ G AFV +ED + A L
Sbjct: 14 NRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 73
Query: 214 QGFKI 218
GF +
Sbjct: 74 SGFNV 78
>UNIPROTKB|F8W9F8 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0005737 GO:GO:0000166 EMBL:AL512366 EMBL:AL589794
IPI:IPI00981528 HGNC:HGNC:24086 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
GO:GO:0003723 ProteinModelPortal:F8W9F8 SMR:F8W9F8
Ensembl:ENST00000395489 UCSC:uc010qho.2 ArrayExpress:F8W9F8
Bgee:F8W9F8 Uniprot:F8W9F8
Length = 587
Score = 93 (37.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQY-PGFKEVRMIEAKPGIAFVEFEDDVQSSM 208
++T + IL+++NL T+ M+E F PG V ++ AFV F + +
Sbjct: 217 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERVKKIRDYAFVHFSNREDAVE 274
Query: 209 AMQALQGFKITPQNPMAITFAK 230
AM+AL G K+ +P+ +T AK
Sbjct: 275 AMKALNG-KVLDGSPIEVTLAK 295
Score = 62 (26.9 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 33 LFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNF 75
L + G+I+++ + RG A+V FS A NA++Q+ N+
Sbjct: 68 LCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNY 112
>UNIPROTKB|Q9NQ94 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9606
"Homo sapiens" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0005783
"endoplasmic reticulum" evidence=IEA] [GO:0030895 "apolipoprotein B
mRNA editing enzyme complex" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0003727 "single-stranded RNA binding"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0050821 "protein stabilization" evidence=IDA] [GO:0003725
"double-stranded RNA binding" evidence=IDA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016554 "cytidine
to uridine editing" evidence=TAS] [GO:0016556 "mRNA modification"
evidence=TAS] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0010467
GO:GO:0050821 GO:GO:0005654 GO:GO:0000166 EMBL:AJ272078
EMBL:AJ272079 EMBL:AF209192 EMBL:AF271789 EMBL:AF271790
EMBL:AK000324 EMBL:AK291982 EMBL:AL512366 EMBL:AL589794
EMBL:CH471083 EMBL:BC130519 EMBL:BC144196 IPI:IPI00071360
IPI:IPI00148257 IPI:IPI00299499 IPI:IPI00657723 IPI:IPI00657770
IPI:IPI00981528 RefSeq:NP_001185747.1 RefSeq:NP_001185748.1
RefSeq:NP_001185749.1 RefSeq:NP_055391.2 RefSeq:NP_620310.1
RefSeq:NP_620311.1 UniGene:Hs.282795 PDB:2CPD PDBsum:2CPD
ProteinModelPortal:Q9NQ94 SMR:Q9NQ94 IntAct:Q9NQ94 STRING:Q9NQ94
PhosphoSite:Q9NQ94 DMDM:74761651 PaxDb:Q9NQ94 PRIDE:Q9NQ94
Ensembl:ENST00000282641 Ensembl:ENST00000373993
Ensembl:ENST00000373995 Ensembl:ENST00000373997
Ensembl:ENST00000374001 Ensembl:ENST00000395495 GeneID:29974
KEGG:hsa:29974 UCSC:uc001jjh.3 UCSC:uc001jji.3 UCSC:uc001jjj.3
CTD:29974 GeneCards:GC10M052566 HGNC:HGNC:24086 HPA:HPA037779
neXtProt:NX_Q9NQ94 PharmGKB:PA162375098 eggNOG:NOG258596
HOVERGEN:HBG051917 InParanoid:Q9NQ94 OMA:PGYAVPN PhylomeDB:Q9NQ94
Reactome:REACT_1675 EvolutionaryTrace:Q9NQ94 GenomeRNAi:29974
NextBio:52719 ArrayExpress:Q9NQ94 Bgee:Q9NQ94 CleanEx:HS_A1CF
Genevestigator:Q9NQ94 GermOnline:ENSG00000148584 GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20
Gene3D:3.30.70.330 InterPro:IPR006535 TIGRFAMs:TIGR01648
Uniprot:Q9NQ94
Length = 594
Score = 93 (37.8 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQY-PGFKEVRMIEAKPGIAFVEFEDDVQSSM 208
++T + IL+++NL T+ M+E F PG V ++ AFV F + +
Sbjct: 224 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERVKKIRDYAFVHFSNREDAVE 281
Query: 209 AMQALQGFKITPQNPMAITFAK 230
AM+AL G K+ +P+ +T AK
Sbjct: 282 AMKALNG-KVLDGSPIEVTLAK 302
Score = 62 (26.9 bits), Expect = 0.00031, Sum P(2) = 0.00031
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 33 LFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNF 75
L + G+I+++ + RG A+V FS A NA++Q+ N+
Sbjct: 75 LCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKVEAKNAIKQLNNY 119
>UNIPROTKB|Q8WN55 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9913 "Bos taurus" [GO:0005634 "nucleus" evidence=ISS]
[GO:0051148 "negative regulation of muscle cell differentiation"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA
binding" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 EMBL:AF445640 IPI:IPI00712263
RefSeq:NP_776867.1 UniGene:Bt.9031 ProteinModelPortal:Q8WN55
SMR:Q8WN55 PRIDE:Q8WN55 Ensembl:ENSBTAT00000066209 GeneID:282018
KEGG:bta:282018 CTD:5725 HOVERGEN:HBG069548 KO:K13218 OMA:SEECAQT
NextBio:20805882 ArrayExpress:Q8WN55 GO:GO:0051148 Uniprot:Q8WN55
Length = 531
Score = 101 (40.6 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 141 AASFRNANTQETAAPNNILFIQNL-PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVE 199
AA+ R A A N++L + NL P T L +LF Y + V+++ K A V+
Sbjct: 321 AAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKVLFNKKENALVQ 380
Query: 200 FEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
D Q+ +AM L G K+ + P+ IT +K
Sbjct: 381 MADGSQAQLAMSHLNGHKLHGK-PVRITLSK 410
Score = 51 (23.0 bits), Expect = 0.00033, Sum P(2) = 0.00033
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 30 LYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK--PMRIQYA 87
L+ +FS++G + ++ T + QA + +++ +A +A + Y+ +RI ++
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 88 KSKS 91
K S
Sbjct: 259 KLTS 262
>UNIPROTKB|E2QU21 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 CTD:348093
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AAEX03016208
RefSeq:XP_853385.2 Ensembl:ENSCAFT00000027080 GeneID:610746
KEGG:cfa:610746 NextBio:20896295 Uniprot:E2QU21
Length = 214
Score = 107 (42.7 bits), Expect = 0.00034, P = 0.00034
Identities = 29/104 (27%), Positives = 50/104 (48%)
Query: 131 GTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE--VRM 188
GTG + GT + A +E LF+ LP + L +LF+ + G++ +++
Sbjct: 13 GTGTGTGTGTGSGSGGALEEEVRT----LFVSGLPVDIKPRELYLLFRPFKGYEGSLIKL 68
Query: 189 IEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNP--MAITFAK 230
+P + FV F+ + A AL G + P+NP + + FAK
Sbjct: 69 TSRQP-VGFVIFDSRAGAEAAKNALNGIRFDPENPQTLRLEFAK 111
>GENEDB_PFALCIPARUM|PFL1200c [details] [associations]
symbol:PFL1200c "hypothetical protein,
conserved" species:5833 "Plasmodium falciparum" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014188
HSSP:P19339 HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF
RefSeq:XP_001350646.1 ProteinModelPortal:Q8I5G8 SMR:Q8I5G8
PRIDE:Q8I5G8 EnsemblProtists:PFL1200c:mRNA GeneID:811292
KEGG:pfa:PFL1200c EuPathDB:PlasmoDB:PF3D7_1224900
ProtClustDB:CLSZ2433715 Uniprot:Q8I5G8
Length = 106
Score = 91 (37.1 bits), Expect = 0.00036, P = 0.00036
Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 148 NTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQ 205
N + A + IL+++NLP++ ++ L +F +Y +++R E G +FV ++D
Sbjct: 5 NIRLPAEVSRILYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIYD 64
Query: 206 SSMAMQALQGFKI 218
+ A+ L GF +
Sbjct: 65 AKNALDHLSGFNV 77
>UNIPROTKB|H0YBU9 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945 EMBL:AC011204
EMBL:AC109329 Ensembl:ENST00000519359 Uniprot:H0YBU9
Length = 119
Score = 91 (37.1 bits), Expect = 0.00036, P = 0.00036
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 159 LFIQNLPHETTSSMLEMLFQQYPGFK-EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFK 217
LF+ LP + L +LF+ + G++ + + +K + FV F+ ++ A AL G +
Sbjct: 2 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIR 61
Query: 218 ITPQNP--MAITFAK 230
P+ P + + FAK
Sbjct: 62 FDPEIPQTLRLEFAK 76
>UNIPROTKB|Q8I5G8 [details] [associations]
symbol:PFL1200c "Splicing factor 3b subunit, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AE014188
HSSP:P19339 HOGENOM:HOG000276232 KO:K12833 OMA:YQSTKAF
RefSeq:XP_001350646.1 ProteinModelPortal:Q8I5G8 SMR:Q8I5G8
PRIDE:Q8I5G8 EnsemblProtists:PFL1200c:mRNA GeneID:811292
KEGG:pfa:PFL1200c EuPathDB:PlasmoDB:PF3D7_1224900
ProtClustDB:CLSZ2433715 Uniprot:Q8I5G8
Length = 106
Score = 91 (37.1 bits), Expect = 0.00036, P = 0.00036
Identities = 20/73 (27%), Positives = 40/73 (54%)
Query: 148 NTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQ 205
N + A + IL+++NLP++ ++ L +F +Y +++R E G +FV ++D
Sbjct: 5 NIRLPAEVSRILYVRNLPYKISADELYDIFGKYGTVRQIRKGNAEGTKGTSFVVYDDIYD 64
Query: 206 SSMAMQALQGFKI 218
+ A+ L GF +
Sbjct: 65 AKNALDHLSGFNV 77
>RGD|1561067 [details] [associations]
symbol:Rbpms "RNA binding protein with multiple splicing"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=IEA;ISO] [GO:0008143 "poly(A) RNA binding"
evidence=IEA;ISO] [GO:0010862 "positive regulation of
pathway-restricted SMAD protein phosphorylation" evidence=IEA;ISO]
[GO:0060391 "positive regulation of SMAD protein import into
nucleus" evidence=IEA;ISO] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1561067
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00500000044861 IPI:IPI00959368
Ensembl:ENSRNOT00000068011 Uniprot:F2Z3S5
Length = 110
Score = 91 (37.1 bits), Expect = 0.00036, P = 0.00036
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 159 LFIQNLPHETTSSMLEMLFQQYPGFK-EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFK 217
LF+ LP + L +LF+ + G++ + + +K + FV F+ ++ A AL G +
Sbjct: 4 LFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVSFDSRSEAEAAKNALNGIR 63
Query: 218 ITPQNP--MAITFAK 230
P+ P + + FAK
Sbjct: 64 FDPEIPQTLRLEFAK 78
>WB|WBGene00013293 [details] [associations]
symbol:Y57G11A.5 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:Z99279
RefSeq:NP_502757.2 ProteinModelPortal:O18219 SMR:O18219
EnsemblMetazoa:Y57G11A.5 GeneID:190364 KEGG:cel:CELE_Y57G11A.5
UCSC:Y57G11A.5 CTD:190364 WormBase:Y57G11A.5 eggNOG:NOG301947
HOGENOM:HOG000020379 InParanoid:O18219 OMA:KKICDLE Uniprot:O18219
Length = 110
Score = 91 (37.1 bits), Expect = 0.00036, P = 0.00036
Identities = 20/63 (31%), Positives = 33/63 (52%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG 215
N +++ N+P + T +E +F K + M + PG AFV F+ V + A++ L G
Sbjct: 16 NRQVYVGNMPFDATEKEIEAVFSVMGPIKSIWMAKRPPGFAFVTFKRTVHAFDAVKYLNG 75
Query: 216 FKI 218
KI
Sbjct: 76 KKI 78
>UNIPROTKB|J9P5T5 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 CTD:5725 KO:K13218 EMBL:AAEX03012673
RefSeq:XP_542215.2 ProteinModelPortal:J9P5T5
Ensembl:ENSCAFT00000049054 GeneID:485097 KEGG:cfa:485097
Uniprot:J9P5T5
Length = 557
Score = 101 (40.6 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 141 AASFRNANTQETAAPNNILFIQNL-PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVE 199
AA+ R A A N++L + NL P T L +LF Y + V+++ K A V+
Sbjct: 347 AAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQ 406
Query: 200 FEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
D Q+ +AM L G K+ + P+ IT +K
Sbjct: 407 MADGSQAQLAMSHLNGHKLHGK-PVRITLSK 436
Score = 51 (23.0 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 30 LYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK--PMRIQYA 87
L+ +FS++G + ++ T + QA + +++ +A +A + Y+ +RI ++
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 88 KSKS 91
K S
Sbjct: 259 KLTS 262
>UNIPROTKB|F1S6R7 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9823 "Sus scrofa" [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] [GO:0048025 "negative
regulation of mRNA splicing, via spliceosome" evidence=IEA]
[GO:0036002 "pre-mRNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0048025 GO:GO:0000381
GO:GO:0036002 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:SEECAQT GO:GO:0051148 EMBL:FP015903 Ensembl:ENSSSCT00000014665
Uniprot:F1S6R7
Length = 557
Score = 101 (40.6 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 141 AASFRNANTQETAAPNNILFIQNL-PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVE 199
AA+ R A A N++L + NL P T L +LF Y + V+++ K A V+
Sbjct: 347 AAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQ 406
Query: 200 FEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
D Q+ +AM L G K+ + P+ IT +K
Sbjct: 407 MADGSQAQLAMSHLNGHKLHGK-PVRITLSK 436
Score = 51 (23.0 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 30 LYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK--PMRIQYA 87
L+ +FS++G + ++ T + QA + +++ +A +A + Y+ +RI ++
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 88 KSKS 91
K S
Sbjct: 259 KLTS 262
>UNIPROTKB|F1PCJ7 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0051148 "negative regulation of muscle cell
differentiation" evidence=IEA] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=IEA] [GO:0036002 "pre-mRNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006536 InterPro:IPR012677
PROSITE:PS50102 SMART:SM00360 GO:GO:0005634 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0048025 GO:GO:0000381
GO:GO:0036002 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
OMA:SEECAQT GO:GO:0051148 EMBL:AAEX03012673
Ensembl:ENSCAFT00000031317 Uniprot:F1PCJ7
Length = 558
Score = 101 (40.6 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 141 AASFRNANTQETAAPNNILFIQNL-PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVE 199
AA+ R A A N++L + NL P T L +LF Y + V+++ K A V+
Sbjct: 348 AAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQ 407
Query: 200 FEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
D Q+ +AM L G K+ + P+ IT +K
Sbjct: 408 MADGSQAQLAMSHLNGHKLHGK-PVRITLSK 437
Score = 51 (23.0 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 30 LYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK--PMRIQYA 87
L+ +FS++G + ++ T + QA + +++ +A +A + Y+ +RI ++
Sbjct: 201 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 259
Query: 88 KSKS 91
K S
Sbjct: 260 KLTS 263
>UNIPROTKB|Q5R9H4 [details] [associations]
symbol:A1CF "APOBEC1 complementation factor" species:9601
"Pongo abelii" [GO:0003727 "single-stranded RNA binding"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=ISS] [GO:0030895
"apolipoprotein B mRNA editing enzyme complex" evidence=ISS]
[GO:0050821 "protein stabilization" evidence=ISS] [GO:0003725
"double-stranded RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821
GO:GO:0000166 CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895
GO:GO:0003727 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:CR859414
RefSeq:NP_001127437.1 UniGene:Pab.12059 ProteinModelPortal:Q5R9H4
SMR:Q5R9H4 GeneID:100174508 KEGG:pon:100174508 InParanoid:Q5R9H4
Uniprot:Q5R9H4
Length = 587
Score = 93 (37.8 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQY-PGFKEVRMIEAKPGIAFVEFEDDVQSSM 208
++T + IL+++NL T+ M+E F PG V ++ AFV F + +
Sbjct: 224 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERVKKIRDYAFVHFSNREDAVE 281
Query: 209 AMQALQGFKITPQNPMAITFAK 230
AM+AL G K+ +P+ +T AK
Sbjct: 282 AMKALNG-KVLDGSPIEVTLAK 302
Score = 61 (26.5 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 33 LFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNF 75
L + G+I+++ + RG A+V FS A NA++Q+ N+
Sbjct: 75 LCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKLEAKNAIKQLNNY 119
>RGD|619834 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003725 "double-stranded RNA binding" evidence=ISO;ISS]
[GO:0003727 "single-stranded RNA binding" evidence=ISO;ISS]
[GO:0003729 "mRNA binding" evidence=IDA] [GO:0004131 "cytosine
deaminase activity" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005720 "nuclear heterochromatin" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=ISO;IDA] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=NAS;IMP]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;ISS;TAS] [GO:0050821 "protein stabilization"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
RGD:619834 GO:GO:0005783 GO:GO:0005737 GO:GO:0050821 GO:GO:0000166
CTD:29974 HOVERGEN:HBG051917 GO:GO:0030895 GO:GO:0005720
GO:GO:0004131 GO:GO:0003729 GO:GO:0003727 GO:GO:0016554
GO:GO:0016556 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
HOGENOM:HOG000186083 OrthoDB:EOG4SXNCC EMBL:AF290984 EMBL:AF442133
EMBL:AF442134 EMBL:AF442135 EMBL:AY028945 IPI:IPI00382071
IPI:IPI00679207 IPI:IPI00679214 IPI:IPI00679221 RefSeq:NP_596891.1
UniGene:Rn.162520 ProteinModelPortal:Q923K9 SMR:Q923K9
STRING:Q923K9 PhosphoSite:Q923K9 PRIDE:Q923K9
Ensembl:ENSRNOT00000052256 GeneID:170912 KEGG:rno:170912
UCSC:RGD:619834 eggNOG:NOG246793 InParanoid:Q923K9 OMA:HAGVHHI
NextBio:621377 ArrayExpress:Q923K9 Genevestigator:Q923K9
Uniprot:Q923K9
Length = 594
Score = 93 (37.8 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQY-PGFKEVRMIEAKPGIAFVEFEDDVQSSM 208
++T + IL+++NL T+ M+E F PG V ++ AFV F + +
Sbjct: 224 EDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPG--AVERVKKIRDYAFVHFSNREDAVE 281
Query: 209 AMQALQGFKITPQNPMAITFAK 230
AM+AL G K+ +P+ +T AK
Sbjct: 282 AMKALNG-KVLDGSPIEVTLAK 302
Score = 61 (26.5 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 33 LFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNF 75
L + G+I+++ + RG A+V FS A NA++Q+ N+
Sbjct: 75 LCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEAKNAIKQLNNY 119
>UNIPROTKB|F1LNL0 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
InterPro:IPR014720 RGD:619834 GO:GO:0050821 GO:GO:0000166
GO:GO:0030895 GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
IPI:IPI00679207 Ensembl:ENSRNOT00000067643 ArrayExpress:F1LNL0
Uniprot:F1LNL0
Length = 594
Score = 93 (37.8 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQY-PGFKEVRMIEAKPGIAFVEFEDDVQSSM 208
++T + IL+++NL T+ M+E F PG V ++ AFV F + +
Sbjct: 224 EDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPG--AVERVKKIRDYAFVHFSNREDAVE 281
Query: 209 AMQALQGFKITPQNPMAITFAK 230
AM+AL G K+ +P+ +T AK
Sbjct: 282 AMKALNG-KVLDGSPIEVTLAK 302
Score = 61 (26.5 bits), Expect = 0.00039, Sum P(2) = 0.00039
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 33 LFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNF 75
L + G+I+++ + RG A+V FS A NA++Q+ N+
Sbjct: 75 LCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEAKNAIKQLNNY 119
>MGI|MGI:1917115 [details] [associations]
symbol:A1cf "APOBEC1 complementation factor" species:10090
"Mus musculus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=TAS] [GO:0003727 "single-stranded RNA binding"
evidence=ISO] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0004131
"cytosine deaminase activity" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005720 "nuclear heterochromatin" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0005783 "endoplasmic
reticulum" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0016554 "cytidine to uridine editing"
evidence=TAS] [GO:0016556 "mRNA modification" evidence=ISO]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=ISO;TAS] [GO:0050821 "protein stabilization" evidence=ISO]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 InterPro:IPR014720 MGI:MGI:1917115 GO:GO:0005783
GO:GO:0005737 GO:GO:0050821 GO:GO:0000166 CTD:29974
eggNOG:NOG258596 HOVERGEN:HBG051917 OMA:PGYAVPN GO:GO:0030895
GO:GO:0005720 GO:GO:0004131 GO:GO:0003729 GO:GO:0003727
GO:GO:0016554 GO:GO:0006397 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 EMBL:AY566862 EMBL:AY566863
EMBL:AY566864 EMBL:AC117816 EMBL:AC125019 EMBL:BC089622
IPI:IPI00357048 IPI:IPI00665782 IPI:IPI00667120
RefSeq:NP_001074543.1 UniGene:Mm.87538 ProteinModelPortal:Q5YD48
SMR:Q5YD48 STRING:Q5YD48 PhosphoSite:Q5YD48 PaxDb:Q5YD48
PRIDE:Q5YD48 Ensembl:ENSMUST00000075838 GeneID:69865 KEGG:mmu:69865
UCSC:uc008het.1 UCSC:uc008heu.1 UCSC:uc008hev.1
GeneTree:ENSGT00550000074366 HOGENOM:HOG000186083 InParanoid:Q5YD48
OrthoDB:EOG4SXNCC NextBio:330501 Bgee:Q5YD48 CleanEx:MM_A1CF
Genevestigator:Q5YD48 GermOnline:ENSMUSG00000052595 Uniprot:Q5YD48
Length = 595
Score = 93 (37.8 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQY-PGFKEVRMIEAKPGIAFVEFEDDVQSSM 208
++T + IL+++NL T+ M+E F PG V ++ AFV F + +
Sbjct: 224 EDTMSSVKILYVRNLMLSTSEEMIEKEFNSIKPG--AVERVKKIRDYAFVHFSNREDAVE 281
Query: 209 AMQALQGFKITPQNPMAITFAK 230
AM+AL G K+ +P+ +T AK
Sbjct: 282 AMKALNG-KVLDGSPIEVTLAK 302
Score = 61 (26.5 bits), Expect = 0.00040, Sum P(2) = 0.00040
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 33 LFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNF 75
L + G+I+++ + RG A+V FS A NA++Q+ N+
Sbjct: 75 LCEKIGKIYEMRLMMDFNGNNRGYAFVTFSNKQEAKNAIKQLNNY 119
>UNIPROTKB|F5H357 [details] [associations]
symbol:RBPMS "RNA-binding protein with multiple-splicing"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00414709 HGNC:HGNC:19097 ChiTaRS:RBPMS EMBL:AC102945
EMBL:AC011204 EMBL:AC109329 ProteinModelPortal:F5H357 SMR:F5H357
PRIDE:F5H357 Ensembl:ENST00000538486 ArrayExpress:F5H357
Bgee:F5H357 Uniprot:F5H357
Length = 153
Score = 101 (40.6 bits), Expect = 0.00041, P = 0.00041
Identities = 29/101 (28%), Positives = 48/101 (47%)
Query: 136 SNGGTAASFRN---ANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK-EVRMIEA 191
+NGG A AN QE LF+ LP + L +LF+ + G++ + + +
Sbjct: 2 NNGGKAEKENTPSEANLQEEEV--RTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTS 59
Query: 192 KPGIAFVEFEDDVQSSMAMQALQGFKITPQNP--MAITFAK 230
K + FV F+ ++ A AL G + P+ P + + FAK
Sbjct: 60 KQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAK 100
>UNIPROTKB|F1SD00 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 OMA:PGYAVPN GO:GO:0030895 GO:GO:0003727
Gene3D:3.30.160.20 Gene3D:3.30.70.330 InterPro:IPR006535
TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366 EMBL:CT954228
Ensembl:ENSSSCT00000011416 Uniprot:F1SD00
Length = 546
Score = 92 (37.4 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQY-PGFKEVRMIEAKPGIAFVEFEDDVQSSM 208
++T + IL+++NL T+ M+E F PG V ++ AFV F + +
Sbjct: 224 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERVKKIRDYAFVHFTNREDAVE 281
Query: 209 AMQALQGFKITPQNPMAITFAK 230
AM+AL G K+ +P+ +T AK
Sbjct: 282 AMKALNG-KVLDGSPIEVTLAK 302
Score = 61 (26.5 bits), Expect = 0.00043, Sum P(2) = 0.00043
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 33 LFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNF 75
L + G+I+++ + RG A+V FS A NA++Q+ N+
Sbjct: 75 LCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEAKNAIKQLNNY 119
>UNIPROTKB|P26599 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=IDA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IDA] [GO:0036002 "pre-mRNA
binding" evidence=IDA] [GO:0033119 "negative regulation of RNA
splicing" evidence=IDA] [GO:0048025 "negative regulation of mRNA
splicing, via spliceosome" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006397 "mRNA processing" evidence=TAS]
[GO:0005730 "nucleolus" evidence=TAS] [GO:0008187 "poly-pyrimidine
tract binding" evidence=TAS] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS]
[GO:0008380 "RNA splicing" evidence=TAS] [GO:0010467 "gene
expression" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] Reactome:REACT_71 InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0005654 GO:GO:0005730 GO:GO:0000166
Reactome:REACT_1675 Gene3D:3.30.70.330 GO:GO:0000398 EMBL:CH471242
GO:GO:0048025 GO:GO:0000381 GO:GO:0008187 GO:GO:0036002
TIGRFAMs:TIGR01649 CTD:5725 HOVERGEN:HBG069548 KO:K13218
OMA:SEECAQT GO:GO:0051148 EMBL:X62006 EMBL:X65371 EMBL:X65372
EMBL:X60648 EMBL:X66975 EMBL:BT006819 EMBL:AC006273 EMBL:BC002397
EMBL:BC004383 EMBL:BC013694 IPI:IPI00179964 IPI:IPI00183626
IPI:IPI00334175 PIR:S23016 RefSeq:NP_002810.1 RefSeq:NP_114367.1
RefSeq:NP_114368.1 UniGene:Hs.172550 PDB:1QM9 PDB:1SJQ PDB:1SJR
PDB:2AD9 PDB:2ADB PDB:2ADC PDB:2EVZ PDB:3ZZY PDB:3ZZZ PDBsum:1QM9
PDBsum:1SJQ PDBsum:1SJR PDBsum:2AD9 PDBsum:2ADB PDBsum:2ADC
PDBsum:2EVZ PDBsum:3ZZY PDBsum:3ZZZ ProteinModelPortal:P26599
SMR:P26599 IntAct:P26599 MINT:MINT-1348690 STRING:P26599
PhosphoSite:P26599 DMDM:131528 SWISS-2DPAGE:P26599 PaxDb:P26599
PRIDE:P26599 DNASU:5725 Ensembl:ENST00000349038
Ensembl:ENST00000356948 Ensembl:ENST00000394601 GeneID:5725
KEGG:hsa:5725 UCSC:uc002lpq.2 UCSC:uc002lpr.2 GeneCards:GC19P000797
H-InvDB:HIX0137476 HGNC:HGNC:9583 HPA:CAB013507 MIM:600693
neXtProt:NX_P26599 PharmGKB:PA33934 eggNOG:NOG263741
HOGENOM:HOG000231699 ChEMBL:CHEMBL1293230 EvolutionaryTrace:P26599
GenomeRNAi:5725 NextBio:22252 PMAP-CutDB:P26599 ArrayExpress:P26599
Bgee:P26599 CleanEx:HS_PTBP1 Genevestigator:P26599
GermOnline:ENSG00000011304 Uniprot:P26599
Length = 531
Score = 100 (40.3 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 141 AASFRNANTQETAAPNNILFIQNL-PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVE 199
AA+ R A A N++L + NL P T L +LF Y + V+++ K A V+
Sbjct: 321 AAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQ 380
Query: 200 FEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
D Q+ +AM L G K+ + P+ IT +K
Sbjct: 381 MADGNQAQLAMSHLNGHKLHGK-PIRITLSK 410
Score = 51 (23.0 bits), Expect = 0.00044, Sum P(2) = 0.00044
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 30 LYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK--PMRIQYA 87
L+ +FS++G + ++ T + QA + +++ +A +A + Y+ +RI ++
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 88 KSKS 91
K S
Sbjct: 259 KLTS 262
>ASPGD|ASPL0000063387 [details] [associations]
symbol:AN7700 species:162425 "Emericella nidulans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0032995 "regulation of
fungal-type cell wall biogenesis" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:BN001304 EMBL:AACD01000130
OrthoDB:EOG42592X eggNOG:NOG255497 RefSeq:XP_680969.1
ProteinModelPortal:Q5AVI0 EnsemblFungi:CADANIAT00000831
GeneID:2869448 KEGG:ani:AN7700.2 HOGENOM:HOG000174215 OMA:NSVKGGI
Uniprot:Q5AVI0
Length = 628
Score = 113 (44.8 bits), Expect = 0.00046, P = 0.00046
Identities = 28/91 (30%), Positives = 48/91 (52%)
Query: 143 SFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG-IAFVEFE 201
SF AN + P N L++ NLP +T L+ LF + G+K + + G + FVEFE
Sbjct: 399 SFPAANPNDMNPPCNTLYVGNLPPDTQEEELKALFSKQRGYKRLCFRNKQNGPMCFVEFE 458
Query: 202 DDVQSSMAMQALQGFKITP--QNPMAITFAK 230
D + + L G+K++ + + ++F+K
Sbjct: 459 DVRTAGKTLNELYGYKLSNSIKTGIRLSFSK 489
>UNIPROTKB|F1P2M9 [details] [associations]
symbol:RBPMS2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 IPI:IPI00591826
OMA:KLTSRQP GeneTree:ENSGT00500000044861 EMBL:AADN02051088
Ensembl:ENSGALT00000040332 Uniprot:F1P2M9
Length = 198
Score = 105 (42.0 bits), Expect = 0.00047, P = 0.00047
Identities = 26/90 (28%), Positives = 45/90 (50%)
Query: 145 RNANTQ-ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK-EVRMIEAKPGIAFVEFED 202
RN N++ E LF+ LP + L +LF+ + G++ + + +K + FV F+
Sbjct: 7 RNVNSRLELGQEVRTLFVSGLPVDIKPRELYLLFRPFKGYEGSLIKLTSKQPVGFVTFDS 66
Query: 203 DVQSSMAMQALQGFKITPQNP--MAITFAK 230
+ A AL G + P+NP + + FAK
Sbjct: 67 RAGAEAAKNALNGIRFDPENPQTLRLEFAK 96
>UNIPROTKB|Q29099 [details] [associations]
symbol:PTBP1 "Polypyrimidine tract-binding protein 1"
species:9823 "Sus scrofa" [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=ISS] [GO:0000381 "regulation
of alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0048025 "negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0005634 "nucleus" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 GO:GO:0005634
GO:GO:0008380 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649
CTD:5725 HOVERGEN:HBG069548 KO:K13218 GO:GO:0051148
eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X93009 PIR:S68857
RefSeq:NP_999396.1 UniGene:Ssc.16210 ProteinModelPortal:Q29099
SMR:Q29099 STRING:Q29099 PRIDE:Q29099 GeneID:397461 KEGG:ssc:397461
OrthoDB:EOG4GMTXQ Uniprot:Q29099
Length = 557
Score = 100 (40.3 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 141 AASFRNANTQETAAPNNILFIQNL-PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVE 199
AA+ R A A N++L + NL P T L +LF Y + V+++ K A V+
Sbjct: 347 AAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYCDVQRVKILFNKKENALVQ 406
Query: 200 FEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
D Q+ +AM L G K+ + P+ IT +K
Sbjct: 407 MADGSQAQLAMSHLNGHKLHGK-PVRITLSK 436
Score = 51 (23.0 bits), Expect = 0.00050, Sum P(2) = 0.00050
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 30 LYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK--PMRIQYA 87
L+ +FS++G + ++ T + QA + +++ +A +A + Y+ +RI ++
Sbjct: 200 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 258
Query: 88 KSKS 91
K S
Sbjct: 259 KLTS 262
>UNIPROTKB|E1B7G9 [details] [associations]
symbol:A1CF "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0050821 "protein stabilization" evidence=IEA]
[GO:0030895 "apolipoprotein B mRNA editing enzyme complex"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0003727
"single-stranded RNA binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 InterPro:IPR014720
GO:GO:0050821 GO:GO:0000166 CTD:29974 OMA:PGYAVPN GO:GO:0030895
GO:GO:0003727 Gene3D:3.30.160.20 Gene3D:3.30.70.330
InterPro:IPR006535 TIGRFAMs:TIGR01648 GeneTree:ENSGT00550000074366
EMBL:DAAA02058697 EMBL:DAAA02058698 IPI:IPI01002256
RefSeq:XP_003587913.1 ProteinModelPortal:E1B7G9
Ensembl:ENSBTAT00000033157 GeneID:100336715 KEGG:bta:100336715
Uniprot:E1B7G9
Length = 595
Score = 92 (37.4 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 26/82 (31%), Positives = 43/82 (52%)
Query: 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQY-PGFKEVRMIEAKPGIAFVEFEDDVQSSM 208
++T + IL+++NL T+ M+E F PG V ++ AFV F + +
Sbjct: 224 EDTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPG--AVERVKKIRDYAFVHFTNREDAVE 281
Query: 209 AMQALQGFKITPQNPMAITFAK 230
AM+AL G K+ +P+ +T AK
Sbjct: 282 AMKALNG-KVLDGSPIEVTLAK 302
Score = 61 (26.5 bits), Expect = 0.00053, Sum P(2) = 0.00053
Identities = 14/45 (31%), Positives = 25/45 (55%)
Query: 33 LFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNF 75
L + G+I+++ + RG A+V FS A NA++Q+ N+
Sbjct: 75 LCEKIGKIYEMRMMMDFNGNNRGYAFVTFSNKQEAKNAIKQLNNY 119
>DICTYBASE|DDB_G0274523 [details] [associations]
symbol:DDB_G0274523 "RNA recognition motif-containing
protein RRM" species:44689 "Dictyostelium discoideum" [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0005575 "cellular_component" evidence=ND]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 dictyBase:DDB_G0274523 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AAFI02000012 eggNOG:COG0724
RefSeq:XP_644081.1 ProteinModelPortal:Q86HL7 PRIDE:Q86HL7
EnsemblProtists:DDB0233759 GeneID:8619510 KEGG:ddi:DDB_G0274523
InParanoid:Q86HL7 OMA:QNNHHDP Uniprot:Q86HL7
Length = 904
Score = 96 (38.9 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 23/81 (28%), Positives = 42/81 (51%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG----IAFVEFEDDVQSSMAM 210
P+N LFI+ LP++ T L LF+ + E +++ G FV F ++ +S A+
Sbjct: 195 PSNNLFIKPLPYDVTDDQLRKLFEPFGKIIECKVMLDHNGQSKFAGFVRFSSELDASKAI 254
Query: 211 QALQGFKITPQN--PMAITFA 229
A+ G +I + P+ + +A
Sbjct: 255 DAMNGVRINKDSGYPLVVKYA 275
Score = 59 (25.8 bits), Expect = 0.00073, Sum P(2) = 0.00073
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 33 LFSQYGRIFDVVALKTPKLR--GQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82
LFS+YG++ + PK G +V FS ++ A+ ++ + + +K +
Sbjct: 128 LFSKYGKVLSSKVMIDPKGNSYGYGFVRFSSPQESAAAIEELDGYQYQNKKL 179
>POMBASE|SPBC29A3.07c [details] [associations]
symbol:sab14 "U2 snRNP-associated protein SF3B14
ortholog (predicted)" species:4896 "Schizosaccharomyces pombe"
[GO:0000384 "first spliceosomal transesterification activity"
evidence=ISS] [GO:0003723 "RNA binding" evidence=ISM] [GO:0005681
"spliceosomal complex" evidence=NAS] [GO:0005686 "U2 snRNP"
evidence=ISS] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=ISS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPBC29A3.07c GO:GO:0000166
EMBL:CU329671 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723
GO:GO:0005686 eggNOG:COG0724 GO:GO:0045292 HOGENOM:HOG000276232
PIR:T40078 HSSP:Q9Y3B4 ProteinModelPortal:O59670 IntAct:O59670
STRING:O59670 OrthoDB:EOG4HB1W3 NextBio:20801589 GO:GO:0000384
Uniprot:O59670
Length = 115
Score = 88 (36.0 bits), Expect = 0.00078, P = 0.00078
Identities = 25/97 (25%), Positives = 41/97 (42%)
Query: 6 IPP---NQTIYXXXXXXXXXXXXXXRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
+PP NQ + +Y LF +YG + + T + RG A+VV+ V
Sbjct: 1 MPPSTVNQEVNSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTRGTAFVVYENV 60
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDG 99
A A ++ + F D+ + + Y + AK DG
Sbjct: 61 QDARRACEKLSGYNFMDRYLVVHYYNPER---AKVDG 94
>MGI|MGI:1334446 [details] [associations]
symbol:Rbpms "RNA binding protein gene with multiple
splicing" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003713 "transcription coactivator activity"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0006355 "regulation of transcription, DNA-dependent"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0010862 "positive regulation of pathway-restricted SMAD protein
phosphorylation" evidence=ISO] [GO:0060391 "positive regulation of
SMAD protein import into nucleus" evidence=ISO] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
MGI:MGI:1334446 GO:GO:0005634 GO:GO:0005737 GO:GO:0006355
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006351 GO:GO:0003713
GO:GO:0010862 GO:GO:0060391 GO:GO:0008143 HOGENOM:HOG000017369
HOVERGEN:HBG069897 CTD:11030 eggNOG:NOG292253 OrthoDB:EOG4NGGNV
ChiTaRS:RBPMS EMBL:AF148511 EMBL:AK012265 EMBL:AK012586
EMBL:AK041118 EMBL:AC123616 EMBL:AC127551 EMBL:AC162523
EMBL:BC030397 IPI:IPI00122127 IPI:IPI00125806 IPI:IPI00132006
RefSeq:NP_001036139.1 RefSeq:NP_001036140.1 RefSeq:NP_062707.1
UniGene:Mm.323997 ProteinModelPortal:Q9WVB0 SMR:Q9WVB0
STRING:Q9WVB0 PaxDb:Q9WVB0 PRIDE:Q9WVB0 Ensembl:ENSMUST00000033994
Ensembl:ENSMUST00000033995 Ensembl:ENSMUST00000053251 GeneID:19663
KEGG:mmu:19663 NextBio:296958 CleanEx:MM_RBPMS
Genevestigator:Q9WVB0 GermOnline:ENSMUSG00000031586 Uniprot:Q9WVB0
Length = 197
Score = 103 (41.3 bits), Expect = 0.00084, P = 0.00084
Identities = 30/101 (29%), Positives = 48/101 (47%)
Query: 137 NGGTAASFRN----ANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK-EVRMIEA 191
NGG A N AN QE LF+ LP + L +LF+ + G++ + + +
Sbjct: 2 NGGGKAEKENTPSEANLQEEEV--RTLFVSGLPLDIKPRELYLLFRPFKGYEGSLIKLTS 59
Query: 192 KPGIAFVEFEDDVQSSMAMQALQGFKITPQNP--MAITFAK 230
K + FV F+ ++ A AL G + P+ P + + FAK
Sbjct: 60 KQPVGFVSFDSRSEAEAAKNALNGIRFDPEIPQTLRLEFAK 100
>RGD|62047 [details] [associations]
symbol:Ptbp1 "polypyrimidine tract binding protein 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISO;ISS] [GO:0003697 "single-stranded DNA
binding" evidence=TAS] [GO:0003723 "RNA binding" evidence=IEA;TAS]
[GO:0004519 "endonuclease activity" evidence=TAS] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=TAS] [GO:0033119
"negative regulation of RNA splicing" evidence=ISO] [GO:0036002
"pre-mRNA binding" evidence=ISO] [GO:0048025 "negative regulation of
mRNA splicing, via spliceosome" evidence=ISO;ISS] [GO:0051148
"negative regulation of muscle cell differentiation"
evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR006536
InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360 RGD:62047
GO:GO:0005634 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0003697 GO:GO:0004519
GO:GO:0048025 GO:GO:0000381 TIGRFAMs:TIGR01649 HOVERGEN:HBG069548
GO:GO:0051148 eggNOG:NOG263741 HOGENOM:HOG000231699 EMBL:X60789
EMBL:X60790 EMBL:X74565 IPI:IPI00231555 IPI:IPI00390239 PIR:S15552
PIR:S36629 UniGene:Rn.64440 ProteinModelPortal:Q00438 SMR:Q00438
STRING:Q00438 PhosphoSite:Q00438 PRIDE:Q00438 UCSC:RGD:62047
InParanoid:Q00438 ChEMBL:CHEMBL2786 NextBio:609388
ArrayExpress:Q00438 Genevestigator:Q00438
GermOnline:ENSRNOG00000010448 Uniprot:Q00438
Length = 555
Score = 98 (39.6 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 141 AASFRNANTQETAAPNNILFIQNL-PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVE 199
AA+ R A A N++L + NL P T L +LF Y + V+++ K A VE
Sbjct: 345 AAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVE 404
Query: 200 FEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
D Q+ +AM L G K+ ++ + IT +K
Sbjct: 405 MADGSQAQLAMSHLNGHKLHGKS-VRITLSK 434
Score = 51 (23.0 bits), Expect = 0.00088, Sum P(2) = 0.00088
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 30 LYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK--PMRIQYA 87
L+ +FS++G + ++ T + QA + +++ +A +A + Y+ +RI ++
Sbjct: 199 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFS 257
Query: 88 KSKS 91
K S
Sbjct: 258 KLTS 261
>UNIPROTKB|H0YHU8 [details] [associations]
symbol:SART3 "Squamous cell carcinoma antigen recognized by
T-cells 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:AC008119 HGNC:HGNC:16860 ChiTaRS:SART3
EMBL:AC010206 Ensembl:ENST00000547397 Bgee:H0YHU8 Uniprot:H0YHU8
Length = 144
Score = 97 (39.2 bits), Expect = 0.00088, P = 0.00088
Identities = 23/71 (32%), Positives = 40/71 (56%)
Query: 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIE---AKP-GIAFVEFEDDVQSS 207
T+ + LFI LP T LE + + + K++R++ KP G+A+VE+E++ Q+S
Sbjct: 35 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQAS 94
Query: 208 MAMQALQGFKI 218
A+ + G I
Sbjct: 95 QAVMKMDGMTI 105
>UNIPROTKB|F1P5K0 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 TIGRFAMs:TIGR01649 GeneTree:ENSGT00550000074508
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00571435 Ensembl:ENSGALT00000003039
ArrayExpress:F1P5K0 Uniprot:F1P5K0
Length = 527
Score = 98 (39.6 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 141 AASFRNANTQETAAPNNILFIQNL-PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVE 199
AA+ R A A N++L + NL P T L +LF Y + V+++ K A V+
Sbjct: 317 AAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQ 376
Query: 200 FEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
D Q+ +AM L G K+ + P+ IT +K
Sbjct: 377 MADGNQAQLAMSHLNGQKLHGK-PIRITLSK 406
Score = 50 (22.7 bits), Expect = 0.00097, Sum P(2) = 0.00097
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 30 LYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK--PMRIQYA 87
L+ +FS++G + ++ T + QA + +++ +A +A + Y+ +RI ++
Sbjct: 171 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPMSAQHAKLSLDGQNIYNACCTLRIDFS 229
Query: 88 KSKS 91
K S
Sbjct: 230 KLTS 233
>UNIPROTKB|E1BVR1 [details] [associations]
symbol:PTBP1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0036002 "pre-mRNA binding"
evidence=IEA] [GO:0048025 "negative regulation of mRNA splicing,
via spliceosome" evidence=IEA] [GO:0051148 "negative regulation of
muscle cell differentiation" evidence=IEA] InterPro:IPR000504
InterPro:IPR006536 InterPro:IPR012677 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048025 GO:GO:0000381 GO:GO:0036002 TIGRFAMs:TIGR01649
GeneTree:ENSGT00550000074508 OMA:SEECAQT GO:GO:0051148
EMBL:AADN02066656 EMBL:AADN02066657 EMBL:AADN02066658
EMBL:AADN02066659 IPI:IPI00684956 ProteinModelPortal:E1BVR1
Ensembl:ENSGALT00000003042 ArrayExpress:E1BVR1 Uniprot:E1BVR1
Length = 532
Score = 98 (39.6 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 30/91 (32%), Positives = 46/91 (50%)
Query: 141 AASFRNANTQETAAPNNILFIQNL-PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVE 199
AA+ R A A N++L + NL P T L +LF Y + V+++ K A V+
Sbjct: 322 AAAGRIAIPGLAGAGNSVLLVSNLNPERVTPQCLFILFGVYGDVQRVKILFNKKENALVQ 381
Query: 200 FEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
D Q+ +AM L G K+ + P+ IT +K
Sbjct: 382 MADGNQAQLAMSHLNGQKLHGK-PIRITLSK 411
Score = 50 (22.7 bits), Expect = 0.00099, Sum P(2) = 0.00099
Identities = 14/64 (21%), Positives = 33/64 (51%)
Query: 30 LYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK--PMRIQYA 87
L+ +FS++G + ++ T + QA + +++ +A +A + Y+ +RI ++
Sbjct: 176 LHQIFSKFGTVLKIITF-TKNNQFQALLQYADPMSAQHAKLSLDGQNIYNACCTLRIDFS 234
Query: 88 KSKS 91
K S
Sbjct: 235 KLTS 238
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.319 0.130 0.377 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 231 195 0.00078 111 3 11 22 0.45 32
31 0.44 35
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 96
No. of states in DFA: 597 (63 KB)
Total size of DFA: 151 KB (2091 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.07u 0.08s 16.15t Elapsed: 00:00:01
Total cpu time: 16.08u 0.08s 16.16t Elapsed: 00:00:01
Start: Sat May 11 10:02:02 2013 End: Sat May 11 10:02:03 2013