BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026902
(231 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|359806644|ref|NP_001241278.1| uncharacterized protein LOC100805822 [Glycine max]
gi|255647802|gb|ACU24361.1| unknown [Glycine max]
Length = 232
Score = 393 bits (1010), Expect = e-107, Method: Compositional matrix adjust.
Identities = 198/232 (85%), Positives = 216/232 (93%), Gaps = 1/232 (0%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQTIYIKN+NEK+KK+ELKRSLYCLFSQYGRI DV+ALKTPKLRGQAWV FS
Sbjct: 1 MLSGDIPPNQTIYIKNINEKVKKDELKRSLYCLFSQYGRILDVIALKTPKLRGQAWVCFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAASNAVRQMQNFPFYDKPMRIQYAK+KSDC+AKE+G++VPREKKKKQEEKAERKRRA
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKTKSDCIAKEEGTYVPREKKKKQEEKAERKRRA 120
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNA-NTQETAAPNNILFIQNLPHETTSSMLEMLFQQ 179
EEAQQS +ANGT + SNGG ASFR QETAAPNNILFI+NLPHETT MLEMLF+Q
Sbjct: 121 EEAQQSGVANGTHSASNGGPTASFRQGPGAQETAAPNNILFIENLPHETTGRMLEMLFEQ 180
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
YPGFKEVR+IEAKPGIAFV+FED+VQSSMAMQAL GFKITPQNPM ITFAKK
Sbjct: 181 YPGFKEVRLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAKK 232
>gi|169589|gb|AAA33847.1| spliceosomal protein [Solanum tuberosum]
Length = 231
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 185/233 (79%), Positives = 208/233 (89%), Gaps = 5/233 (2%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+TGDIPPNQTIYIKNLNEK+KKEELKRSLYCLFSQYGRI D+VALKTPKLRGQ+WVVFS
Sbjct: 2 MLTGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRIVDIVALKTPKLRGQSWVVFS 61
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDC+AK +G++ +KKKKQ+EK E+++R
Sbjct: 62 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCIAKAEGTY---DKKKKQDEKVEKRKRT 118
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNA--NTQETAAPNNILFIQNLPHETTSSMLEMLFQ 178
EE Q+ ANG SNGG AA+ R + Q+ A PNNILFIQNLPHETTS MLE+LF+
Sbjct: 119 EETPQTGAANGPRTDSNGGPAAASRQGKPSAQDVAEPNNILFIQNLPHETTSMMLEVLFK 178
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QYPGF+EVRMIEAKPGIAFVEF+DDVQSS+AMQALQGFKITPQNPMAIT+AKK
Sbjct: 179 QYPGFREVRMIEAKPGIAFVEFDDDVQSSVAMQALQGFKITPQNPMAITYAKK 231
>gi|225434417|ref|XP_002271864.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Vitis vinifera]
gi|297745807|emb|CBI15863.3| unnamed protein product [Vitis vinifera]
Length = 234
Score = 388 bits (996), Expect = e-105, Method: Compositional matrix adjust.
Identities = 197/234 (84%), Positives = 214/234 (91%), Gaps = 3/234 (1%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQ+IYIKNLNEK+KKEELKRSLYCLFSQYGRI DVVALKTPKLRGQAWVVFS
Sbjct: 1 MLSGDIPPNQSIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVVFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAASNAVRQMQNFPFYDKPMR+QYAK+KSDCVAK DG+FVPREKKKKQEEKAE+KRRA
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRVQYAKTKSDCVAKADGTFVPREKKKKQEEKAEKKRRA 120
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNAN---TQETAAPNNILFIQNLPHETTSSMLEMLF 177
EEAQQS ANG A++NGG FR N + AAPNNILFIQNLPH+TTS ML++LF
Sbjct: 121 EEAQQSGNANGRNAETNGGPTPPFRQGNQGAREPEAAPNNILFIQNLPHQTTSMMLQVLF 180
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QQYPGF+EVRMIEAKPGIAFVEFEDDVQSSMAM+ALQGFKITPQNPMAI +AKK
Sbjct: 181 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMEALQGFKITPQNPMAIAYAKK 234
>gi|351726226|ref|NP_001237887.1| uncharacterized protein LOC100499914 [Glycine max]
gi|255627621|gb|ACU14155.1| unknown [Glycine max]
Length = 232
Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust.
Identities = 196/232 (84%), Positives = 211/232 (90%), Gaps = 1/232 (0%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQTIYIKNLNEK+KK+ELKRSLYCLF QYGRI DV+ALKTPKLRGQAWV FS
Sbjct: 1 MLSGDIPPNQTIYIKNLNEKVKKDELKRSLYCLFPQYGRILDVIALKTPKLRGQAWVCFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAASNAVRQMQNFPFYDKPMRI YAK+KSDC+AKE+GSFVPREKKKKQEEKAERKRR
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIHYAKTKSDCIAKEEGSFVPREKKKKQEEKAERKRRV 120
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNA-NTQETAAPNNILFIQNLPHETTSSMLEMLFQQ 179
EEAQQS +ANGT + SNGG ASFR QE AAPNNILFI+NLPHETT MLEMLF+Q
Sbjct: 121 EEAQQSGVANGTHSASNGGPTASFRQGPGAQEAAAPNNILFIENLPHETTGRMLEMLFEQ 180
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
YPGFKEV +IEAKPGIAFV+FED+VQSSMAMQAL GFKITPQNPM ITFAKK
Sbjct: 181 YPGFKEVCLIEAKPGIAFVDFEDEVQSSMAMQALHGFKITPQNPMIITFAKK 232
>gi|449439191|ref|XP_004137370.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis
sativus]
gi|449520549|ref|XP_004167296.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' 2-like [Cucumis
sativus]
Length = 231
Score = 382 bits (980), Expect = e-104, Method: Compositional matrix adjust.
Identities = 194/232 (83%), Positives = 214/232 (92%), Gaps = 2/232 (0%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQTIYIKNLNEK+KKEELKRSLY LFSQYGRI DVVALKTP+LRGQAWV FS
Sbjct: 1 MLSGDIPPNQTIYIKNLNEKVKKEELKRSLYALFSQYGRILDVVALKTPRLRGQAWVAFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDC+AK DGSFVPREKKKKQEEKAE+KRRA
Sbjct: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKADGSFVPREKKKKQEEKAEKKRRA 120
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQET-AAPNNILFIQNLPHETTSSMLEMLFQQ 179
EE QS+M NGT + NGG+ A+FR+AN T A PNNILFI+NLPHET+S ML++LFQQ
Sbjct: 121 EETHQSAMPNGTTTE-NGGSNATFRHANPSATEATPNNILFIENLPHETSSMMLQVLFQQ 179
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
YPGF+EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI PQ+PMAI+FAKK
Sbjct: 180 YPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIDPQHPMAISFAKK 231
>gi|357491327|ref|XP_003615951.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
gi|355517286|gb|AES98909.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
gi|388501104|gb|AFK38618.1| unknown [Medicago truncatula]
Length = 233
Score = 374 bits (960), Expect = e-101, Method: Compositional matrix adjust.
Identities = 191/233 (81%), Positives = 214/233 (91%), Gaps = 2/233 (0%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQTIYIKNLNEKIKK+ELKRSLYCLFSQYGRI D++ALKTPKLRGQAWV FS
Sbjct: 1 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDC+AKE+GSFVPREKKKKQEEKAE+K+ A
Sbjct: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
Query: 121 EEAQQSSMAN-GTGAQSNGGTAASFR-NANTQETAAPNNILFIQNLPHETTSSMLEMLFQ 178
+E++QS++ N GT SNGG+ ASFR + QE AAPNNILFI+NLP+ETT MLEMLF+
Sbjct: 121 DESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFE 180
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QYPGFKEVR+IEAKPGIAFV+FEDD QSSMAMQALQGFKITPQNPM I FAKK
Sbjct: 181 QYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 233
>gi|224146679|ref|XP_002326095.1| predicted protein [Populus trichocarpa]
gi|222862970|gb|EEF00477.1| predicted protein [Populus trichocarpa]
Length = 233
Score = 373 bits (958), Expect = e-101, Method: Compositional matrix adjust.
Identities = 196/234 (83%), Positives = 212/234 (90%), Gaps = 4/234 (1%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+TGDIPPNQTIYIKNLNEK+KKEELKRSLYCLFSQYGRI DVVALKT +LRGQAWVVFS
Sbjct: 1 MLTGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTARLRGQAWVVFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPR-EKKKKQEEKAERKRR 119
EVTAASNAVRQMQ FPFYDKPMRIQYAK+KSDC+A+ +G + P +KKKKQEEKAERK+R
Sbjct: 61 EVTAASNAVRQMQGFPFYDKPMRIQYAKTKSDCIAEAEGVYDPNAKKKKKQEEKAERKKR 120
Query: 120 AEEAQQSSMANGTGAQSNGGTAASFRNAN--TQETAAPNNILFIQNLPHETTSSMLEMLF 177
AEEAQQS+ ANG A+SNGG SFR N QET PNNILFIQNLPHETTS ML++LF
Sbjct: 121 AEEAQQSAPANGKPAESNGG-PTSFRQGNQSAQETVPPNNILFIQNLPHETTSMMLQVLF 179
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QQYPGF+EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT+AKK
Sbjct: 180 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITYAKK 233
>gi|15227729|ref|NP_180585.1| U2 small nuclear ribonucleoprotein B'' [Arabidopsis thaliana]
gi|75318049|sp|O22922.1|RU2B1_ARATH RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|2347192|gb|AAC16931.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
gi|27765024|gb|AAO23633.1| At2g30260 [Arabidopsis thaliana]
gi|110743428|dbj|BAE99600.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
gi|330253269|gb|AEC08363.1| U2 small nuclear ribonucleoprotein B'' [Arabidopsis thaliana]
Length = 232
Score = 371 bits (952), Expect = e-100, Method: Compositional matrix adjust.
Identities = 175/234 (74%), Positives = 204/234 (87%), Gaps = 5/234 (2%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+T DIPPNQ+IYI+NLNE+IKKEELKRSLYCLFSQ+GRI DVVALKTPKLRGQAWV FS
Sbjct: 1 MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAA +AVRQMQNFPFYDKPMR+QYAK+KSDC+AK +G+FVP++KK+KQEEK ERKR
Sbjct: 61 EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKR-- 118
Query: 121 EEAQQSSMANG---TGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
E++Q+ + ANG G +N G A + QET PNNILFIQNLPHETTS ML++LF
Sbjct: 119 EDSQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLF 178
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+QYPGFKE+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKITPQNPM I+FAKK
Sbjct: 179 EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>gi|388501866|gb|AFK38999.1| unknown [Medicago truncatula]
Length = 234
Score = 370 bits (951), Expect = e-100, Method: Compositional matrix adjust.
Identities = 190/234 (81%), Positives = 213/234 (91%), Gaps = 3/234 (1%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQTIYIKNLNEKIKK+ELKRSLYCLFSQYGRI D++ALKTPKLRGQAWV FS
Sbjct: 1 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDC+AKE+GSFVPREKKKKQEEKAE+K+ A
Sbjct: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
Query: 121 EEAQQSSMANG--TGAQSNGGTAASFR-NANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
+E++QS++ NG GA + G T ASFR + QE AAPNNILFI+NLP+ETT MLEMLF
Sbjct: 121 DESKQSAVPNGGTHGASNGGSTQASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLF 180
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+QYPGFKEVR+IEAKPGIAFV+FEDD QSSMAMQALQGFKITPQNPM I FAKK
Sbjct: 181 EQYPGFKEVRLIEAKPGIAFVDFEDDGQSSMAMQALQGFKITPQNPMIINFAKK 234
>gi|255553401|ref|XP_002517742.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
gi|223543140|gb|EEF44674.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
Length = 233
Score = 369 bits (947), Expect = e-100, Method: Compositional matrix adjust.
Identities = 194/234 (82%), Positives = 209/234 (89%), Gaps = 4/234 (1%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+TGDIPPNQTIYIKNLNEK+KKEELKRSLYCLFSQYGRI DVVALKTPKLRGQAWV FS
Sbjct: 1 MLTGDIPPNQTIYIKNLNEKVKKEELKRSLYCLFSQYGRILDVVALKTPKLRGQAWVCFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPR-EKKKKQEEKAERKRR 119
EV AASNAVRQMQ FPFYDKPMRIQYAK+KSDC+ + +G++ P +KKKKQEEKAERKRR
Sbjct: 61 EVMAASNAVRQMQGFPFYDKPMRIQYAKTKSDCLVEAEGNYDPNAKKKKKQEEKAERKRR 120
Query: 120 AEEAQQSSMANGTGAQSNGGTAASFRNAN--TQETAAPNNILFIQNLPHETTSSMLEMLF 177
AEEAQQS+ ANGT +N GT A FR N QE A PNNILFIQNLPHETTS ML++LF
Sbjct: 121 AEEAQQSATANGTSTVNNRGT-APFRQGNRGEQEAAPPNNILFIQNLPHETTSMMLQVLF 179
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QQYPGF+EVRMIEAKPGIAFVEFEDDVQSSMAMQALQ FKITPQNPMAIT+AKK
Sbjct: 180 QQYPGFREVRMIEAKPGIAFVEFEDDVQSSMAMQALQSFKITPQNPMAITYAKK 233
>gi|30679892|ref|NP_850936.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|75329133|sp|Q8H1S6.1|RU2B2_ARATH RecName: Full=U2 small nuclear ribonucleoprotein B'' 2; Short=U2
snRNP B'' 2
gi|23296313|gb|AAN13038.1| putative spliceosomal protein (U2B) [Arabidopsis thaliana]
gi|332189937|gb|AEE28058.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 229
Score = 358 bits (919), Expect = 9e-97, Method: Compositional matrix adjust.
Identities = 182/231 (78%), Positives = 201/231 (87%), Gaps = 2/231 (0%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+T DIPPNQ+IYIK++NEKIKKEELKRSLYCLFSQ+GR+ DVVALKTPKLRGQAWVVF+
Sbjct: 1 MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSD V K +GSFVP+EKK KQEEK ERKR A
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
EE QQ SM NG Q NG F+ + Q+T PNNILFI NLP ET S ML++LF+QY
Sbjct: 121 EETQQPSMPNGATTQ-NGMPVPPFQPSG-QDTMPPNNILFIHNLPIETNSMMLQLLFEQY 178
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PGFKE+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKITPQNPM ++FAKK
Sbjct: 179 PGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229
>gi|30679897|ref|NP_172177.3| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332189938|gb|AEE28059.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 228
Score = 356 bits (913), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 181/231 (78%), Positives = 201/231 (87%), Gaps = 3/231 (1%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+T DIPPNQ+IYIK++NEKIKKEELKRSLYCLFSQ+GR+ DVVALKTPKLRGQAWVVF+
Sbjct: 1 MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSD V K +GSFVP+EKK KQEEK ERKR A
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
EE QQ SM N GA + G F+ + Q+T PNNILFI NLP ET S ML++LF+QY
Sbjct: 121 EETQQPSMPN--GATTQNGMPPPFQPSG-QDTMPPNNILFIHNLPIETNSMMLQLLFEQY 177
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PGFKE+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKITPQNPM ++FAKK
Sbjct: 178 PGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 228
>gi|297826425|ref|XP_002881095.1| hypothetical protein ARALYDRAFT_320780 [Arabidopsis lyrata subsp.
lyrata]
gi|297326934|gb|EFH57354.1| hypothetical protein ARALYDRAFT_320780 [Arabidopsis lyrata subsp.
lyrata]
Length = 232
Score = 354 bits (909), Expect = 1e-95, Method: Compositional matrix adjust.
Identities = 177/234 (75%), Positives = 203/234 (86%), Gaps = 5/234 (2%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+T DIPPNQ+IYI+NLNEKIKKEELKRSLYCLFSQ+GRI DVVALKTPKLRGQAWV FS
Sbjct: 1 MLTADIPPNQSIYIQNLNEKIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAASNAVRQMQNFPFYDKPMR+QYAK+KSDC+AK +G+FVP++KK+KQEEK ERK
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERK--R 118
Query: 121 EEAQQSSMANG---TGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
EE+Q+ + ANG G +N G A + QE PNNILFIQNLPHETTS ML++LF
Sbjct: 119 EESQRPNTANGPSANGPSANNGVPAPSFPPSGQEAMPPNNILFIQNLPHETTSMMLQLLF 178
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+QYPGFKE+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKITPQNPM I+FAKK
Sbjct: 179 EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>gi|8954049|gb|AAF82223.1|AC067971_31 Strong similarity to a small nuclear ribonucleoprotein U2B'' -
potato from Solanum tuberosum gb|M72892. It contains an
RNA recognition motif PF|00076. ESTs gb|AA041158 and
gb|AI992475 come from this gene [Arabidopsis thaliana]
Length = 247
Score = 353 bits (905), Expect = 4e-95, Method: Compositional matrix adjust.
Identities = 181/247 (73%), Positives = 200/247 (80%), Gaps = 16/247 (6%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+T DIPPNQ+IYIK++NEKIKKEELKRSLYCLFSQ+GR+ DVVALKTPKLRGQAWVVF+
Sbjct: 1 MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSD V K +GSFVP+EKK KQEEK ERKR A
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120
Query: 121 EEAQQSSMANGTGAQSNGGTAASFR----------------NANTQETAAPNNILFIQNL 164
EE QQ SM NG Q+ A S + Q+T PNNILFI NL
Sbjct: 121 EETQQPSMPNGATTQNGMPVAISLSRIIPTIQYYLLTDPPFQPSGQDTMPPNNILFIHNL 180
Query: 165 PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPM 224
P ET S ML++LF+QYPGFKE+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKITPQNPM
Sbjct: 181 PIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPM 240
Query: 225 AITFAKK 231
++FAKK
Sbjct: 241 VVSFAKK 247
>gi|19347861|gb|AAL85989.1| putative spliceosomal protein (U2B) [Arabidopsis thaliana]
Length = 228
Score = 352 bits (904), Expect = 5e-95, Method: Compositional matrix adjust.
Identities = 179/231 (77%), Positives = 201/231 (87%), Gaps = 3/231 (1%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+T DIPPNQ+IYIK+++EKIKKEELKRSLYCLFSQ+GR+ DVVALKTPKLRGQAWVVF+
Sbjct: 1 MLTADIPPNQSIYIKHISEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSD V K +GSFVP+EKK KQEEK ERKR A
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
EE QQ SM N GA + G F+ + Q+T PNNILFI NLP ET S ML++LF+QY
Sbjct: 121 EETQQPSMPN--GATTQNGMPPPFQPSG-QDTMPPNNILFIHNLPIETNSMMLQLLFEQY 177
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PGFKE+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKITP+NPM ++FAKK
Sbjct: 178 PGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPRNPMVVSFAKK 228
>gi|116781538|gb|ABK22144.1| unknown [Picea sitchensis]
Length = 235
Score = 348 bits (894), Expect = 8e-94, Method: Compositional matrix adjust.
Identities = 170/237 (71%), Positives = 198/237 (83%), Gaps = 8/237 (3%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++ DIPPNQTIY+ NLNE++KKEELK+SLY LFSQ+GRI D+VALKT KLRGQAWVVF
Sbjct: 1 MMSADIPPNQTIYVNNLNERVKKEELKKSLYALFSQFGRIADIVALKTTKLRGQAWVVFD 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
E+TAASNA+RQMQ FPFYDKPMRIQY KSKSD +AK DG++VPREK+KKQEEKAE KRR
Sbjct: 61 EITAASNALRQMQGFPFYDKPMRIQYGKSKSDAIAKVDGTYVPREKRKKQEEKAE-KRRK 119
Query: 121 EEAQQSSMANGTGAQSNGGTAAS------FRNANTQETAAPNNILFIQNLPHETTSSMLE 174
E+ + NG A S G AAS + ++ + A PNNILFIQNLPHETT+ ML+
Sbjct: 120 EQHETHQAGNGP-ATSYGAAAASQSQFQQGKPSSQEPPAPPNNILFIQNLPHETTTMMLQ 178
Query: 175 MLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
MLFQQYPGFKEVRMIEAKPGIAFVE+ D++Q+S+AMQALQGFKITPQNPM IT+AKK
Sbjct: 179 MLFQQYPGFKEVRMIEAKPGIAFVEYGDEMQASVAMQALQGFKITPQNPMLITYAKK 235
>gi|21593001|gb|AAM64950.1| putative small nuclear ribonucleoprotein U2B [Arabidopsis thaliana]
Length = 232
Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust.
Identities = 173/234 (73%), Positives = 201/234 (85%), Gaps = 5/234 (2%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+T DIPPN +IYI+NLNE+IKKEELKRSLYCLFSQ+GRI DVVALKTPKLRGQAWV FS
Sbjct: 1 MLTADIPPNHSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAA +AVRQMQNFP YDKPMR+QYAK+KSDC+AK +G+FVP++KK+KQEEK ERK
Sbjct: 61 EVTAAGHAVRQMQNFPXYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERK--R 118
Query: 121 EEAQQSSMANG---TGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
EE+Q+ + ANG G +N G A + QET PNNILFIQNLPHETTS ML++LF
Sbjct: 119 EESQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLF 178
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+QYPGFKE+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKITPQNPM I+FAKK
Sbjct: 179 EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>gi|217069866|gb|ACJ83293.1| unknown [Medicago truncatula]
Length = 211
Score = 334 bits (857), Expect = 2e-89, Method: Compositional matrix adjust.
Identities = 171/211 (81%), Positives = 194/211 (91%), Gaps = 2/211 (0%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQTIYIKNLNEKIKK+ELKRSLYCLFSQYGRI D++ALKTPKLRGQAWV FS
Sbjct: 1 MLSGDIPPNQTIYIKNLNEKIKKDELKRSLYCLFSQYGRILDIIALKTPKLRGQAWVCFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAASNAVRQMQNFPFY+KPMRIQYAK+KSDC+AKE+GSFVPREKKKKQEEKAE+K+ A
Sbjct: 61 EVTAASNAVRQMQNFPFYEKPMRIQYAKTKSDCIAKEEGSFVPREKKKKQEEKAEKKKYA 120
Query: 121 EEAQQSSMAN-GTGAQSNGGTAASFR-NANTQETAAPNNILFIQNLPHETTSSMLEMLFQ 178
+E++QS++ N GT SNGG+ ASFR + QE AAPNNILFI+NLP+ETT MLEMLF+
Sbjct: 121 DESKQSAVPNGGTHGASNGGSTASFRPGSGAQEAAAPNNILFIENLPYETTGRMLEMLFE 180
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMA 209
QYPGFKEVR+IEAKPGIAFV+FEDD QSSMA
Sbjct: 181 QYPGFKEVRLIEAKPGIAFVDFEDDGQSSMA 211
>gi|242036017|ref|XP_002465403.1| hypothetical protein SORBIDRAFT_01g038060 [Sorghum bicolor]
gi|241919257|gb|EER92401.1| hypothetical protein SORBIDRAFT_01g038060 [Sorghum bicolor]
Length = 233
Score = 333 bits (853), Expect = 4e-89, Method: Compositional matrix adjust.
Identities = 175/234 (74%), Positives = 202/234 (86%), Gaps = 4/234 (1%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQTIY+ NLNEK+KKEELKRSLY L SQYGRI DVVALKT KLRGQAWVVFS
Sbjct: 1 MLSGDIPPNQTIYLNNLNEKVKKEELKRSLYALCSQYGRILDVVALKTQKLRGQAWVVFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEK-AERKRR 119
E+TAA+NA R +Q+F FY K MR+QYAK+KSDC+AKEDG++ P+EK+KKQEEK AE+KRR
Sbjct: 61 EITAATNAFRGLQDFDFYGKKMRVQYAKTKSDCIAKEDGTYAPKEKRKKQEEKAAEKKRR 120
Query: 120 AEEAQQSSMANGTGAQSNG-GTAASFRNANTQE-TAAPNNILFIQNLPHETTSSMLEMLF 177
AEEAQQ+ N + AQSNG G AS +QE A PNNILFIQNLP +TTS ML++LF
Sbjct: 121 AEEAQQAG-PNASAAQSNGTGYQASRLGKVSQEPPAPPNNILFIQNLPDQTTSMMLQILF 179
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QQYPGF+EVRMIEAKPGIAFVEFEDD QS +AMQALQGFKITP+NPMAI++AKK
Sbjct: 180 QQYPGFREVRMIEAKPGIAFVEFEDDSQSMVAMQALQGFKITPENPMAISYAKK 233
>gi|226531516|ref|NP_001149883.1| spliceosomal protein [Zea mays]
gi|194696844|gb|ACF82506.1| unknown [Zea mays]
gi|195635261|gb|ACG37099.1| spliceosomal protein [Zea mays]
gi|195659375|gb|ACG49155.1| spliceosomal protein [Zea mays]
gi|413956009|gb|AFW88658.1| Spliceosomal protein [Zea mays]
Length = 233
Score = 330 bits (845), Expect = 4e-88, Method: Compositional matrix adjust.
Identities = 174/234 (74%), Positives = 200/234 (85%), Gaps = 4/234 (1%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++ DIPPNQTIY+ NLNEK+KKEELKRSLY L SQYGRI DVVALKT KLRGQAWVVFS
Sbjct: 1 MLSADIPPNQTIYLNNLNEKVKKEELKRSLYALCSQYGRILDVVALKTQKLRGQAWVVFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEK-AERKRR 119
E+TAA+NA R +Q+F FY K MR+QYAK+KSDC+AKEDG++ P+EK+KKQEEK AE+KRR
Sbjct: 61 EITAATNAFRGLQDFDFYGKKMRVQYAKTKSDCIAKEDGTYAPKEKRKKQEEKAAEKKRR 120
Query: 120 AEEAQQSSMANGTGAQSNG-GTAASFRNANTQE-TAAPNNILFIQNLPHETTSSMLEMLF 177
AEEAQQ+ N AQSNG G AS +QE A PNNILFIQNLP +TTS ML++LF
Sbjct: 121 AEEAQQAG-PNAAAAQSNGTGYQASRLGKASQEPPAPPNNILFIQNLPDQTTSMMLQILF 179
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QQYPGF+EVRMIEAKPGIAFVEFEDD QS +AMQALQGFKITP+NPMAI++AKK
Sbjct: 180 QQYPGFREVRMIEAKPGIAFVEFEDDGQSMVAMQALQGFKITPENPMAISYAKK 233
>gi|293333676|ref|NP_001169386.1| uncharacterized protein LOC100383254 [Zea mays]
gi|224029017|gb|ACN33584.1| unknown [Zea mays]
gi|414866361|tpg|DAA44918.1| TPA: hypothetical protein ZEAMMB73_448604 [Zea mays]
Length = 233
Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 172/234 (73%), Positives = 200/234 (85%), Gaps = 4/234 (1%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPP+QTIY+ NLNEK+KKEELKRSLY L SQYGRI DVVALKT KLRGQAWV FS
Sbjct: 1 MLSGDIPPSQTIYLNNLNEKVKKEELKRSLYALCSQYGRILDVVALKTQKLRGQAWVAFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEK-AERKRR 119
E+TAA+NA R +Q+F FY K MR+QYAK+KSDC+AKEDG++ P+EK+KKQEEK AE+KRR
Sbjct: 61 EITAATNAFRGLQDFDFYSKKMRVQYAKTKSDCIAKEDGTYAPKEKRKKQEEKAAEKKRR 120
Query: 120 AEEAQQSSMANGTGAQSNG-GTAASFRNANTQE-TAAPNNILFIQNLPHETTSSMLEMLF 177
EEAQQ+ + N AQSNG G AS +QE A PNNILFIQNLP +TTS ML++LF
Sbjct: 121 TEEAQQAGL-NAAAAQSNGTGYQASRLGKASQEPPAPPNNILFIQNLPDQTTSMMLQILF 179
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QQYPGF+EVRMIEAKPGIAFVEFEDD QS +AMQALQGFKITP+NPMAI++AKK
Sbjct: 180 QQYPGFREVRMIEAKPGIAFVEFEDDGQSMVAMQALQGFKITPENPMAISYAKK 233
>gi|384950746|sp|B8AM21.1|RU2B_ORYSI RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|218192634|gb|EEC75061.1| hypothetical protein OsI_11177 [Oryza sativa Indica Group]
Length = 232
Score = 329 bits (844), Expect = 5e-88, Method: Compositional matrix adjust.
Identities = 175/234 (74%), Positives = 198/234 (84%), Gaps = 5/234 (2%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQT+Y++NLNEK+KKEELKRSLY L SQYGRI DVVALKTPKLRGQAWVVFS
Sbjct: 1 MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEK-AERKRR 119
E+TAA+NA R +Q F FY K MR+QYAK+KSDC+A EDGS P+EK+KKQEEK AE+KRR
Sbjct: 61 EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120
Query: 120 AEEAQQSSMANGTGAQSNG-GTAASFRNANTQE-TAAPNNILFIQNLPHETTSSMLEMLF 177
AEEAQQS AQSNG G AS +QE A PNNILFIQNLP ETTS ML++LF
Sbjct: 121 AEEAQQS--GPNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILF 178
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QQYPGF+EVRMIEAKPGIAFVE+EDD QS +AMQALQGFKITP NPMAI++AKK
Sbjct: 179 QQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
>gi|115452491|ref|NP_001049846.1| Os03g0298800 [Oryza sativa Japonica Group]
gi|122247158|sp|Q10MR0.1|RU2B_ORYSJ RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|108707669|gb|ABF95464.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
gi|113548317|dbj|BAF11760.1| Os03g0298800 [Oryza sativa Japonica Group]
gi|215737098|dbj|BAG96027.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624757|gb|EEE58889.1| hypothetical protein OsJ_10509 [Oryza sativa Japonica Group]
Length = 232
Score = 328 bits (842), Expect = 8e-88, Method: Compositional matrix adjust.
Identities = 174/234 (74%), Positives = 198/234 (84%), Gaps = 5/234 (2%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQT+Y++NLNEK+KKEELKRSLY L SQYGRI DVVALKTPKLRGQAWVVFS
Sbjct: 1 MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEK-AERKRR 119
E+TAA+NA R +Q F FY K MR+QYAK++SDC+A EDGS P+EK+KKQEEK AE+KRR
Sbjct: 61 EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120
Query: 120 AEEAQQSSMANGTGAQSNG-GTAASFRNANTQE-TAAPNNILFIQNLPHETTSSMLEMLF 177
AEEAQQS AQSNG G AS +QE A PNNILFIQNLP ETTS ML++LF
Sbjct: 121 AEEAQQS--GPNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILF 178
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QQYPGF+EVRMIEAKPGIAFVE+EDD QS +AMQALQGFKITP NPMAI++AKK
Sbjct: 179 QQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
>gi|108707670|gb|ABF95465.1| RNA recognition motif family protein, expressed [Oryza sativa
Japonica Group]
Length = 231
Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 174/233 (74%), Positives = 198/233 (84%), Gaps = 4/233 (1%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQT+Y++NLNEK+KKEELKRSLY L SQYGRI DVVALKTPKLRGQAWVVFS
Sbjct: 1 MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
E+TAA+NA R +Q F FY K MR+QYAK++SDC+A EDGS P+EK+KKQEEKAE+KRRA
Sbjct: 61 EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAEKKRRA 120
Query: 121 EEAQQSSMANGTGAQSNG-GTAASFRNANTQE-TAAPNNILFIQNLPHETTSSMLEMLFQ 178
EEAQQS AQSNG G AS +QE A PNNILFIQNLP ETTS ML++LFQ
Sbjct: 121 EEAQQS--GPNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILFQ 178
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QYPGF+EVRMIEAKPGIAFVE+EDD QS +AMQALQGFKITP NPMAI++AKK
Sbjct: 179 QYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 231
>gi|297843490|ref|XP_002889626.1| hypothetical protein ARALYDRAFT_887900 [Arabidopsis lyrata subsp.
lyrata]
gi|297335468|gb|EFH65885.1| hypothetical protein ARALYDRAFT_887900 [Arabidopsis lyrata subsp.
lyrata]
Length = 243
Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust.
Identities = 163/222 (73%), Positives = 181/222 (81%), Gaps = 7/222 (3%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+T DIPPNQ+IYIKN+NEKIKKEELKRSLYCLFS +GRI DVVALKTPKLRGQAWVVF+
Sbjct: 1 MLTADIPPNQSIYIKNINEKIKKEELKRSLYCLFSHFGRILDVVALKTPKLRGQAWVVFT 60
Query: 61 EVTAASNAVRQMQNFPFYDK-----PMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE 115
+VTAASNAV QMQNFPFYD RIQYAKSKSD V K G+FVP+EKK KQE+K E
Sbjct: 61 QVTAASNAVLQMQNFPFYDTFSSLMFQRIQYAKSKSDYVTKAQGTFVPKEKKMKQEDKVE 120
Query: 116 RKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEM 175
RKR AEE QQ SM NG Q NG F+ + Q+T PNNILFI NLP E TS ML++
Sbjct: 121 RKRHAEETQQPSMPNGATTQ-NGMPVPPFQPSG-QDTMPPNNILFIHNLPIEMTSMMLQL 178
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFK 217
LF+QY GFKE+RMIEAKPGIAFVE+EDDVQSSMAMQALQGF+
Sbjct: 179 LFEQYTGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFQ 220
>gi|294461275|gb|ADE76200.1| unknown [Picea sitchensis]
gi|294464400|gb|ADE77712.1| unknown [Picea sitchensis]
Length = 241
Score = 323 bits (827), Expect = 4e-86, Method: Compositional matrix adjust.
Identities = 160/241 (66%), Positives = 193/241 (80%), Gaps = 10/241 (4%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M + DIPPN TIYI NLNEK K +ELK+SLY +FSQ+G+I DV+ALKT K RGQAWVVF
Sbjct: 1 MQSSDIPPNMTIYINNLNEKTKLDELKKSLYAVFSQFGKIVDVIALKTLKHRGQAWVVFD 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EV+AA+NA+RQMQ FPFYDKPMRIQYAK+KSD +AK DG++VPREK+++Q+E+AERKRR
Sbjct: 61 EVSAATNALRQMQGFPFYDKPMRIQYAKTKSDAIAKADGTYVPREKRRRQDERAERKRRE 120
Query: 121 E--EAQQ------SSMANGTGAQSNGGTA--ASFRNANTQETAAPNNILFIQNLPHETTS 170
+ E QQ ++ +G GA G S R + + A PNNILF+QNLPHETTS
Sbjct: 121 QHHETQQPGVIPNAAYPSGYGAPILGSQMQFPSSRPSLPEAPAPPNNILFVQNLPHETTS 180
Query: 171 SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
ML+MLF QY GFKEVRMIEAKPGIAFVE+ D++QS++AMQALQGFKITPQNPM IT+AK
Sbjct: 181 MMLQMLFCQYHGFKEVRMIEAKPGIAFVEYADEMQSTVAMQALQGFKITPQNPMLITYAK 240
Query: 231 K 231
K
Sbjct: 241 K 241
>gi|357112644|ref|XP_003558118.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like
[Brachypodium distachyon]
Length = 233
Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust.
Identities = 165/234 (70%), Positives = 193/234 (82%), Gaps = 4/234 (1%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GD+PPNQTIY++NLNEKIKKEELKRSLY L SQYGRI DVVALKTPKLRGQAWV FS
Sbjct: 1 MLSGDVPPNQTIYLRNLNEKIKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVAFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEK-AERKRR 119
E+TAA+NA R +Q+F FY K MR+QYAK+ SDC AK DGS+ P+EK+KKQEEK AE+KRR
Sbjct: 61 EITAATNAFRGLQDFDFYGKRMRVQYAKTMSDCFAKADGSYAPKEKRKKQEEKAAEKKRR 120
Query: 120 AEEAQQSSMANGTGAQSN--GGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
E+AQQ N A SN G A+ F A + A PN ILFIQNLP +TTS ML++LF
Sbjct: 121 TEDAQQPG-PNAPVAPSNVTGYQASRFGKAPQEPPAPPNKILFIQNLPDQTTSMMLQLLF 179
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+QYPGF EVRMIEAKPGIAFVEFED+ QS +AMQALQGFKI+P+NPMAI++AKK
Sbjct: 180 RQYPGFWEVRMIEAKPGIAFVEFEDESQSMVAMQALQGFKISPENPMAISYAKK 233
>gi|326512082|dbj|BAJ96022.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 233
Score = 310 bits (794), Expect = 3e-82, Method: Compositional matrix adjust.
Identities = 165/234 (70%), Positives = 194/234 (82%), Gaps = 4/234 (1%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GD+PPNQT+Y KNLNEK+KKEELKRSLY L SQYGRI DVVALKT KLRGQAWV FS
Sbjct: 1 MLSGDVPPNQTVYFKNLNEKVKKEELKRSLYALCSQYGRIVDVVALKTHKLRGQAWVAFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEK-AERKRR 119
E+TAA+NA R +Q+F FY K MR+QYAK+KSDC AK DGS+ P+EK+KKQEEK AE+KRR
Sbjct: 61 EITAATNAFRGLQDFDFYGKKMRVQYAKTKSDCFAKADGSYAPKEKRKKQEEKAAEKKRR 120
Query: 120 AEEAQQSSMANGTGAQSNGGTAASFRNAN-TQETAA-PNNILFIQNLPHETTSSMLEMLF 177
E+ QQ AN A SNG R A QE AA PNNILF+QNLP +TTS ML++LF
Sbjct: 121 TEDGQQPG-ANAPVAPSNGTGHQPSRFAKPPQEPAAPPNNILFLQNLPDQTTSVMLQILF 179
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QQYPGF+EVRMIEAKPGIAFVE+ED+ QS +AM+ALQGFKI+P+NPMAI++AKK
Sbjct: 180 QQYPGFREVRMIEAKPGIAFVEYEDENQSMVAMEALQGFKISPENPMAISYAKK 233
>gi|449484269|ref|XP_004156835.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Cucumis
sativus]
Length = 242
Score = 306 bits (784), Expect = 4e-81, Method: Compositional matrix adjust.
Identities = 147/233 (63%), Positives = 181/233 (77%), Gaps = 6/233 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++PPN TIYI NLNEKIK EELK+SL +FSQ+G+I +V+A KT K +GQAWVVF EV++
Sbjct: 10 EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+RQMQ FPFYDKPMRIQYAK+KSD +AK DGSFVPREK+K+ EEK +K+ +A
Sbjct: 70 ATNALRQMQGFPFYDKPMRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGRKKKEQHDAN 129
Query: 125 QSSM------ANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQ 178
Q+ M A GA ++ S + A PN+ILF+QNLPHETT ML+MLF
Sbjct: 130 QAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMMLQMLFC 189
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QYPGFKEVRM+EAKPGIAFVE+ D+VQS++AMQALQGFK+ PQN M IT+AKK
Sbjct: 190 QYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYAKK 242
>gi|217072842|gb|ACJ84781.1| unknown [Medicago truncatula]
Length = 245
Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust.
Identities = 146/238 (61%), Positives = 183/238 (76%), Gaps = 16/238 (6%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
P N TIYI NLNEKIK +ELK+SL+ +FSQ+G+I +V+A KT K +GQAWV+F +VT+AS
Sbjct: 11 PQNMTIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVIFEDVTSAS 70
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS 126
NA+RQMQ FPFYDKPMRIQYA++KSD +AK +G+FVPREK+K+ ++KA +KR+ Q
Sbjct: 71 NALRQMQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRHDDKAGKKRK---DQND 127
Query: 127 SMANGTG-----AQSNGGTAA--------SFRNANTQETAAPNNILFIQNLPHETTSSML 173
+ GTG A + G T A ++ + A PNNILFIQNLP+ETT ML
Sbjct: 128 ANLAGTGLNPAYAGAYGATPALSQIPYPGGAKSLLPEAPAPPNNILFIQNLPNETTPMML 187
Query: 174 EMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+MLF QYPGFKEVRM+EAKPGIAFVE+ D++QS+MAMQALQGFKI PQNPM IT+AKK
Sbjct: 188 QMLFLQYPGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQGFKIAPQNPMLITYAKK 245
>gi|1050840|emb|CAA90282.1| U1snRNP-specific protein, U1A [Solanum tuberosum]
Length = 253
Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 144/237 (60%), Positives = 182/237 (76%), Gaps = 9/237 (3%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
G+ PPN TIYI NLNEKIK EELK+S++ +FSQ+G+I +V+A KT K +GQAWVVF EV+
Sbjct: 17 GETPPNVTIYINNLNEKIKLEELKKSMHAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVS 76
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA 123
+ASNA+RQMQ FPFYDKPMRIQYAK+KSD VAK DG+FVPREK+K+ E+K +K+ +++
Sbjct: 77 SASNALRQMQGFPFYDKPMRIQYAKTKSDVVAKADGTFVPREKRKRHEDKGRKKKDQQDS 136
Query: 124 QQSSMANGTGAQSNGGTAASFRN---------ANTQETAAPNNILFIQNLPHETTSSMLE 174
Q+ M G A F A + A PN+ILF+QNLPH++T ML+
Sbjct: 137 NQAGMGLNPAYAGAYGAAPPFSQIPYMGGAKAAVPEAPAPPNSILFVQNLPHQSTPMMLQ 196
Query: 175 MLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
MLF QYPGFKEVRMIEAKPGIAF+E+ D++QS++AMQALQGFKIT +NPM IT+AKK
Sbjct: 197 MLFCQYPGFKEVRMIEAKPGIAFIEYGDEMQSTVAMQALQGFKITAENPMLITYAKK 253
>gi|388497184|gb|AFK36658.1| unknown [Medicago truncatula]
Length = 232
Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 144/234 (61%), Positives = 181/234 (77%), Gaps = 16/234 (6%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
TIYI NLNEKIK +ELK+SL+ +FSQ+G+I +V+A KT K +GQAWV+F +VT+ASNA+R
Sbjct: 2 TIYINNLNEKIKIDELKKSLHAVFSQFGKILEVLAFKTLKHKGQAWVIFEDVTSASNALR 61
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMAN 130
QMQ FPFYDKPMRIQYA++KSD +AK +G+FVPREK+K+ ++KA +KR+ Q +
Sbjct: 62 QMQGFPFYDKPMRIQYARTKSDVIAKAEGTFVPREKRKRHDDKAGKKRK---DQNDANLA 118
Query: 131 GTG-----AQSNGGTAA--------SFRNANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
GTG A + G T A ++ + A PNNILFIQNLP+ETT ML+MLF
Sbjct: 119 GTGLNPAYAGAYGATPALSQIPYPGGAKSLLPEAPAPPNNILFIQNLPNETTPMMLQMLF 178
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QYPGFKEVRM+EAKPGIAFVE+ D++QS+MAMQALQGFKI PQNPM IT+AKK
Sbjct: 179 LQYPGFKEVRMVEAKPGIAFVEYGDEMQSTMAMQALQGFKIAPQNPMLITYAKK 232
>gi|145323766|ref|NP_001077472.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
gi|332189939|gb|AEE28060.1| RNA recognition motif-containing protein [Arabidopsis thaliana]
Length = 200
Score = 290 bits (741), Expect = 4e-76, Method: Compositional matrix adjust.
Identities = 151/196 (77%), Positives = 167/196 (85%), Gaps = 2/196 (1%)
Query: 36 QYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVA 95
++GR+ DVVALKTPKLRGQAWVVF+EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSD V
Sbjct: 7 KFGRLLDVVALKTPKLRGQAWVVFTEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVT 66
Query: 96 KEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAP 155
K +GSFVP+EKK KQEEK ERKR AEE QQ SM NG Q NG F+ + Q+T P
Sbjct: 67 KAEGSFVPKEKKMKQEEKVERKRHAEETQQPSMPNGATTQ-NGMPVPPFQPSG-QDTMPP 124
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG 215
NNILFI NLP ET S ML++LF+QYPGFKE+RMIEAKPGIAFVE+EDDVQSSMAMQALQG
Sbjct: 125 NNILFIHNLPIETNSMMLQLLFEQYPGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQG 184
Query: 216 FKITPQNPMAITFAKK 231
FKITPQNPM ++FAKK
Sbjct: 185 FKITPQNPMVVSFAKK 200
>gi|356573171|ref|XP_003554737.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Glycine max]
Length = 241
Score = 286 bits (732), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 139/239 (58%), Positives = 178/239 (74%), Gaps = 14/239 (5%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
T +IP N TIYI NLNEKIK +ELK+SL +F+Q+G+I +V+A KT K +GQAWVVF +
Sbjct: 7 TPEIPQNNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEDA 66
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
++ASNA+RQMQ FPFYDKPMRIQYAK+KSD +AK DG+FVPREK+K+ +EKA++++ +
Sbjct: 67 SSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDEKAKKRKDQHD 126
Query: 123 AQQSSMANGTGAQSN----------GGTAASFRNANTQETAAPNNILFIQNLPHETTSSM 172
+ + M GG + A A PNNILFIQNLP+++T M
Sbjct: 127 SNLAGMGLNPAYAGAYGAAPAIAYPGGAKSMVPEA----PAPPNNILFIQNLPNDSTPMM 182
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
L+MLF QYPGFKEVRM+E KPGIAFVE+ D++QS++AMQ LQGFKITPQNPM IT+AKK
Sbjct: 183 LQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQGFKITPQNPMLITYAKK 241
>gi|118485733|gb|ABK94716.1| unknown [Populus trichocarpa]
Length = 254
Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 138/236 (58%), Positives = 175/236 (74%), Gaps = 9/236 (3%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ N TIYI NLNEKIK +ELK SL+ +FSQ+G+I +++A KT K +GQAWV+F +V +
Sbjct: 19 DVSQNMTIYINNLNEKIKIDELKTSLHAVFSQFGKILEILAFKTLKHKGQAWVIFEDVQS 78
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
ASNA+RQMQ+FPFYDKPMRIQYAK+KSD +AK DG+FVPREK+++ EEK ++K+ +A
Sbjct: 79 ASNAIRQMQSFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRRRHEEKGKKKKDQHDAN 138
Query: 125 QSSMANGTGAQSNGGTAASF---------RNANTQETAAPNNILFIQNLPHETTSSMLEM 175
Q + GT S ++ + A PNNILFIQNLP+ETT ML+M
Sbjct: 139 QVGVGLTPAYGGAYGTTPSLLQIPYPGGVKSMVPEAPAPPNNILFIQNLPNETTPMMLQM 198
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
LFQQYPGFKEVRM+EAKPGIAFVE+ D++QS+ AM LQGFKI QN M IT+AKK
Sbjct: 199 LFQQYPGFKEVRMVEAKPGIAFVEYGDEMQSTGAMHGLQGFKILQQNSMLITYAKK 254
>gi|255647418|gb|ACU24174.1| unknown [Glycine max]
Length = 241
Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 138/239 (57%), Positives = 177/239 (74%), Gaps = 14/239 (5%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
T +IP N IYI NLNEKIK +ELK+SL +F+Q+G+I +V+A KT K +GQAWVVF +
Sbjct: 7 TPEIPQNNAIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEDA 66
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
++ASNA+RQMQ FPFYDKPMRIQYAK+KSD +AK DG+FVPREK+K+ +EKA++++ +
Sbjct: 67 SSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDEKAKKRKDQHD 126
Query: 123 AQQSSMANGTGAQSN----------GGTAASFRNANTQETAAPNNILFIQNLPHETTSSM 172
+ + M GG + A A PNNILFIQNLP+++T M
Sbjct: 127 SNLAGMGLNPAYAGAYGAAPAIAYPGGAKSMVPEA----PAPPNNILFIQNLPNDSTPMM 182
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
L+MLF QYPGFKEVRM+E KPGIAFVE+ D++QS++AMQ LQGFKITPQNPM IT+AKK
Sbjct: 183 LQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQGFKITPQNPMLITYAKK 241
>gi|224128458|ref|XP_002320337.1| predicted protein [Populus trichocarpa]
gi|222861110|gb|EEE98652.1| predicted protein [Populus trichocarpa]
Length = 231
Score = 282 bits (721), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 136/230 (59%), Positives = 172/230 (74%), Gaps = 9/230 (3%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
TIYI NLNEKIK +ELK SL+ +FSQ+G+I +++A KT K +GQAWV+F +V +ASNA+R
Sbjct: 2 TIYINNLNEKIKIDELKTSLHAVFSQFGKILEILAFKTLKHKGQAWVIFEDVQSASNAIR 61
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMAN 130
QMQ+FPFYDKPMRIQYAK+KSD +AK DG+FVPREK+++ EEK ++K+ +A Q +
Sbjct: 62 QMQSFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRRRHEEKGKKKKDQHDANQVGVGL 121
Query: 131 GTGAQSNGGTAASF---------RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
GT S ++ + A PNNILFIQNLP+ETT ML+MLFQQYP
Sbjct: 122 TPAYGGAYGTTPSLLQIPYPGGVKSMVPEAPAPPNNILFIQNLPNETTPMMLQMLFQQYP 181
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
GFKEVRM+EAKPGIAFVE+ D++QS+ AM LQGFKI QN M IT+AKK
Sbjct: 182 GFKEVRMVEAKPGIAFVEYGDEMQSTGAMHGLQGFKILQQNSMLITYAKK 231
>gi|351722454|ref|NP_001235453.1| uncharacterized protein LOC100500002 [Glycine max]
gi|255628437|gb|ACU14563.1| unknown [Glycine max]
Length = 241
Score = 280 bits (717), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 137/239 (57%), Positives = 177/239 (74%), Gaps = 14/239 (5%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
T +IP + TIYI NLNEKIK +ELK+SL +F+Q+G+I +V+A KT K +GQAWVVF +
Sbjct: 7 TPEIPQSNTIYINNLNEKIKIDELKKSLNAVFTQFGKILEVLAFKTLKHKGQAWVVFEDA 66
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
++ASNA+RQMQ FPFYDKPMRIQYAK+KSD +AK DG+FVPREK+K+ ++KA++++ +
Sbjct: 67 SSASNALRQMQGFPFYDKPMRIQYAKTKSDIIAKADGTFVPREKRKRHDDKAKKRKDQHD 126
Query: 123 AQQSSMANGTGAQSN----------GGTAASFRNANTQETAAPNNILFIQNLPHETTSSM 172
A + M GG + A A PNNILFIQNLP+++T M
Sbjct: 127 ANLAGMGLNPAYAGAYGAAPAIAYPGGAKSMVPEA----PAPPNNILFIQNLPNDSTPMM 182
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
L+MLF QYPGFKEVRM+E KPGIAFVE+ D++QS++AMQ LQ FKITPQNPM IT+AKK
Sbjct: 183 LQMLFLQYPGFKEVRMVETKPGIAFVEYGDEMQSTVAMQTLQCFKITPQNPMLITYAKK 241
>gi|224034387|gb|ACN36269.1| unknown [Zea mays]
gi|413944623|gb|AFW77272.1| hypothetical protein ZEAMMB73_456532 [Zea mays]
Length = 254
Score = 279 bits (714), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 137/237 (57%), Positives = 172/237 (72%), Gaps = 11/237 (4%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN TIYI NLNEKIK EELK+SL +FSQ+G+I DV+A KT K +GQAWVVF +V +A
Sbjct: 18 IPPNVTIYINNLNEKIKLEELKKSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 77
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
+ A+++MQ FPFYDK MRIQYAK+KSD +AK DG+FVPRE++K+ +EK+E+K++ E
Sbjct: 78 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 137
Query: 126 SSMAN-GTGAQSNGGT----------AASFRNANTQETAAPNNILFIQNLPHETTSSMLE 174
+ + G G + G A + E PNNILF+QNLPHETT ML+
Sbjct: 138 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 197
Query: 175 MLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
MLF QYPGFKEVRMIEAKPGIAFVE+ D+ Q++ AM LQ FKIT +N M IT+AKK
Sbjct: 198 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQATAAMNNLQSFKITKENQMVITYAKK 254
>gi|226498478|ref|NP_001144860.1| uncharacterized protein LOC100277950 [Zea mays]
gi|195648000|gb|ACG43468.1| hypothetical protein [Zea mays]
Length = 254
Score = 278 bits (712), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 137/237 (57%), Positives = 171/237 (72%), Gaps = 11/237 (4%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN TIYI NLNEKIK EELK+SL +FSQ+G+I DV+A KT K +GQAWVVF +V +A
Sbjct: 18 IPPNVTIYINNLNEKIKLEELKKSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASA 77
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
+ A+++MQ FPFYDK MRIQYAK+KSD +AK DG+FVPRE++K+ +EK+E+K++ E
Sbjct: 78 TEALKRMQGFPFYDKTMRIQYAKTKSDIIAKADGTFVPRERRKRTDEKSEKKQKREHHHD 137
Query: 126 SSMAN-GTGAQSNGGT----------AASFRNANTQETAAPNNILFIQNLPHETTSSMLE 174
+ + G G + G A + E PNNILF+QNLPHETT ML+
Sbjct: 138 AGASQIGMGVTAYPGVYGAPQLTQIPIAGGQRVMMPEIIVPNNILFVQNLPHETTPMMLQ 197
Query: 175 MLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
MLF QYPGFKEVRMIEAKPGIAFVE+ D+ Q + AM LQ FKIT +N M IT+AKK
Sbjct: 198 MLFCQYPGFKEVRMIEAKPGIAFVEYGDETQVTAAMNNLQSFKITKENQMVITYAKK 254
>gi|255564206|ref|XP_002523100.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
gi|223537662|gb|EEF39285.1| small nuclear ribonucleoprotein U)1a,U)2b, putative [Ricinus
communis]
Length = 254
Score = 278 bits (711), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 134/236 (56%), Positives = 177/236 (75%), Gaps = 10/236 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
+I PN TIYI NLNEKIK +ELK+SL+ +FSQ+G+I +++A KT K +GQAWVVF +V +
Sbjct: 20 EISPNMTIYINNLNEKIKLDELKKSLHAVFSQFGKIIEILAFKTLKHKGQAWVVFEDVQS 79
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+RQMQ+FPFYDKPMRI +AK+KSD +AK DG+FVPREK+K+ EEK +RK+ +A
Sbjct: 80 ATNAIRQMQSFPFYDKPMRIHFAKTKSDVIAKADGTFVPREKRKRHEEKGKRKKEQHDAN 139
Query: 125 QSSMA---------NGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEM 175
Q+ + T S ++ + A PNNILFIQNLP++TT+ +L+M
Sbjct: 140 QAGIGMAPAYAGAYGATPPLSQIPYPGGAKSMVPEAPAPPNNILFIQNLPNDTTTMVLQM 199
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
LFQ Y GFKEVRM+E+KPGIAFVE+ D++QS++AMQ LQG KI QNPM IT+AKK
Sbjct: 200 LFQHYAGFKEVRMVESKPGIAFVEYADEMQSTVAMQGLQGLKIQ-QNPMLITYAKK 254
>gi|225437410|ref|XP_002270967.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Vitis vinifera]
Length = 245
Score = 277 bits (709), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 142/238 (59%), Positives = 180/238 (75%), Gaps = 10/238 (4%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
G+I PN TIYI NLNEKIK EELK+SL+ +FSQ+G+I +V+A KT K +GQAWVVF EV+
Sbjct: 8 GEISPNMTIYINNLNEKIKLEELKKSLFAVFSQFGKIMEVLAFKTLKHKGQAWVVFEEVS 67
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAE-E 122
+A+NA+RQMQ FPFYDKPMRIQYAK+KSD +AK DG+FVPRE++++ +++A RKRR + +
Sbjct: 68 SATNALRQMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPRERRRRHDDRAGRKRREQHD 127
Query: 123 AQQSSMANGTGAQSNGGTAASF---------RNANTQETAAPNNILFIQNLPHETTSSML 173
A Q+ + G A ++A + A PNNILFIQNLPHE T ML
Sbjct: 128 ANQAGVGVNPAYGGAYGAAPPLSQIPYLGGAKSAVPEAPAPPNNILFIQNLPHEATPMML 187
Query: 174 EMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+M F QYPGFKEVRM+EAKPGIAFVE+ D++QS++AMQ LQG KI QNPM IT+AKK
Sbjct: 188 QMFFCQYPGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGLKINQQNPMLITYAKK 245
>gi|224068352|ref|XP_002302719.1| predicted protein [Populus trichocarpa]
gi|222844445|gb|EEE81992.1| predicted protein [Populus trichocarpa]
Length = 251
Score = 276 bits (706), Expect = 4e-72, Method: Compositional matrix adjust.
Identities = 134/236 (56%), Positives = 175/236 (74%), Gaps = 10/236 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ N TIYI NLNEKIK +ELK++L+ +FSQ+G+I +++A KT K +GQAWVVF +V +
Sbjct: 17 EVSSNMTIYINNLNEKIKIDELKKALHAVFSQFGKILEILAFKTLKHKGQAWVVFEDVQS 76
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
ASNA+RQMQ+FPFYDKPMRIQYAK+KSD VAK DG+FVPREK+++ EEK ++K+ +
Sbjct: 77 ASNAMRQMQSFPFYDKPMRIQYAKTKSDIVAKADGTFVPREKRRRHEEKGKKKKDQHDTN 136
Query: 125 QSSMANGTGAQSNGGTA---------ASFRNANTQETAAPNNILFIQNLPHETTSSMLEM 175
Q + GT ++ + A PNNILFIQNLP+ETT+ ML+M
Sbjct: 137 QVGVGLTPAYGGAYGTTPPLSQIPYLGGVKSMVPEAPAPPNNILFIQNLPNETTTMMLQM 196
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
LFQQY GFKEVRM+E KPGIAFVE+ D++QS++AM ALQGFK+ QN M IT+AKK
Sbjct: 197 LFQQYAGFKEVRMVETKPGIAFVEYGDEMQSTVAMHALQGFKLQ-QNSMLITYAKK 251
>gi|115462171|ref|NP_001054685.1| Os05g0154800 [Oryza sativa Japonica Group]
gi|122169518|sp|Q0DKM4.1|RU1A_ORYSJ RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
protein A
gi|384950745|sp|A2Y0J7.1|RU1A_ORYSI RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
protein A
gi|113578236|dbj|BAF16599.1| Os05g0154800 [Oryza sativa Japonica Group]
gi|125550898|gb|EAY96607.1| hypothetical protein OsI_18512 [Oryza sativa Indica Group]
gi|222630249|gb|EEE62381.1| hypothetical protein OsJ_17170 [Oryza sativa Japonica Group]
Length = 253
Score = 275 bits (703), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 171/235 (72%), Gaps = 11/235 (4%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPN TIYI NLNEKIK EELK+SL +FSQ+G+I DV+A KT K +GQAWVVF +V +A+
Sbjct: 20 PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS 126
A++ MQ+FPF++KPMRIQYAK+KSD +AK DG+FVPRE++K+ +EK E+K++ E+
Sbjct: 80 EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139
Query: 127 SMANGTGAQSNGGTA----------ASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
S G G + G A + E PNNILF+QNLPHETT ML+ML
Sbjct: 140 SQV-GLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQML 198
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F QYPGFKEVRM+EAKPGIAFVE+ D+ Q++ AM LQGFKIT N M I++AKK
Sbjct: 199 FCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253
>gi|242086969|ref|XP_002439317.1| hypothetical protein SORBIDRAFT_09g004270 [Sorghum bicolor]
gi|241944602|gb|EES17747.1| hypothetical protein SORBIDRAFT_09g004270 [Sorghum bicolor]
Length = 259
Score = 274 bits (701), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 137/239 (57%), Positives = 171/239 (71%), Gaps = 11/239 (4%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
T + PN TIYI NLNEKIK EELK+SL +FSQ+G+I DV+A KT K +GQAWVVF +V
Sbjct: 22 TNGVQPNVTIYINNLNEKIKLEELKKSLTAVFSQFGKILDVLAFKTLKHKGQAWVVFEDV 81
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
+A+ A+++MQ FPFYDK MRIQYAK+KSD VAK DG+FVPRE++K+ +EK E+K++ E
Sbjct: 82 ASATEALKRMQGFPFYDKTMRIQYAKTKSDIVAKADGTFVPRERRKRVDEKPEKKQKREH 141
Query: 123 AQQSSMANGTGAQSNGGT----------AASFRNANTQETAAPNNILFIQNLPHETTSSM 172
+S G G + G A + E PNNILF+QNLPHETT M
Sbjct: 142 HHDASQI-GMGVNAYPGVYGAPQLTQIPIAGGQRVIMPEIIVPNNILFVQNLPHETTPMM 200
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
L+MLF QYPGFKEVRM+EAKPGIAFVE+ D+ Q++ AM LQ FKIT +N M IT+AKK
Sbjct: 201 LQMLFCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNNLQSFKITKENQMVITYAKK 259
>gi|159470585|ref|XP_001693437.1| predicted protein [Chlamydomonas reinhardtii]
gi|158282940|gb|EDP08691.1| predicted protein [Chlamydomonas reinhardtii]
Length = 233
Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 128/232 (55%), Positives = 169/232 (72%), Gaps = 5/232 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DIPPNQTIY+ NL EK+ KEE+K+ LY +FSQ+GR+ DVVA+KT +LRGQAWVVF++ A
Sbjct: 2 DIPPNQTIYVNNLYEKLSKEEMKKCLYAMFSQFGRVLDVVAMKTYRLRGQAWVVFTDTAA 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+R MQ FPF+DKP+RI YAK+KSD VAK DG++ P +K + Q+ A R R+
Sbjct: 62 ATNALRTMQGFPFFDKPIRITYAKTKSDAVAKVDGTYKPDKKSRAQKNAAARGRKWSRRT 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETA-----APNNILFIQNLPHETTSSMLEMLFQQ 179
+ +G G ++ + + +A APN ILF+QNLP + +ML MLFQQ
Sbjct: 122 RQGFRDGQGGRNGHPMRRGWPSMQAGVSAAGAANAPNKILFVQNLPETSNEAMLGMLFQQ 181
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+PGF+EVRM+EA+PGIAFVE+E+++QS AMQ LQGFKITP N M ITFAK+
Sbjct: 182 FPGFREVRMVEARPGIAFVEYENEMQSGTAMQGLQGFKITPANAMNITFAKQ 233
>gi|302832471|ref|XP_002947800.1| hypothetical protein VOLCADRAFT_103581 [Volvox carteri f.
nagariensis]
gi|300267148|gb|EFJ51333.1| hypothetical protein VOLCADRAFT_103581 [Volvox carteri f.
nagariensis]
Length = 224
Score = 271 bits (692), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 130/231 (56%), Positives = 168/231 (72%), Gaps = 12/231 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DIPPNQTIYI NL EK+ KEELK+ LY +FSQ+GRI DVVA+KT +LRGQAWVVF++ A
Sbjct: 2 DIPPNQTIYINNLYEKLGKEELKKCLYAMFSQFGRIMDVVAMKTYRLRGQAWVVFTDTAA 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+R MQ FPF+DKP+RI YAK KSD VAK DG++ P +K++ Q+ A R
Sbjct: 62 ATNALRTMQGFPFFDKPIRITYAKGKSDAVAKVDGTYKPDKKQRAQKNAAAR-------- 113
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETA----APNNILFIQNLPHETTSSMLEMLFQQY 180
++ + TG ++ G + + APN ILF+QNLP + +ML MLFQQ+
Sbjct: 114 EAMLKRPTGGKAAGASVGGGSAQGAGGGSGLANAPNKILFVQNLPENSNEAMLGMLFQQF 173
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PGF+EVRM+EA+PGIAFVEFE+D+QS+ AMQ LQGFKITP N M I++AK+
Sbjct: 174 PGFREVRMVEARPGIAFVEFENDMQSTTAMQGLQGFKITPANAMNISYAKQ 224
>gi|297743906|emb|CBI36876.3| unnamed protein product [Vitis vinifera]
Length = 232
Score = 268 bits (686), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 138/231 (59%), Positives = 175/231 (75%), Gaps = 10/231 (4%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
TIYI NLNEKIK EELK+SL+ +FSQ+G+I +V+A KT K +GQAWVVF EV++A+NA+R
Sbjct: 2 TIYINNLNEKIKLEELKKSLFAVFSQFGKIMEVLAFKTLKHKGQAWVVFEEVSSATNALR 61
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAE-EAQQSSMA 129
QMQ FPFYDKPMRIQYAK+KSD +AK DG+FVPRE++++ +++A RKRR + +A Q+ +
Sbjct: 62 QMQGFPFYDKPMRIQYAKTKSDVIAKADGTFVPRERRRRHDDRAGRKRREQHDANQAGVG 121
Query: 130 NGTGAQSNGGTAASF---------RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
G A ++A + A PNNILFIQNLPHE T ML+M F QY
Sbjct: 122 VNPAYGGAYGAAPPLSQIPYLGGAKSAVPEAPAPPNNILFIQNLPHEATPMMLQMFFCQY 181
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PGFKEVRM+EAKPGIAFVE+ D++QS++AMQ LQG KI QNPM IT+AKK
Sbjct: 182 PGFKEVRMVEAKPGIAFVEYGDEMQSTVAMQGLQGLKINQQNPMLITYAKK 232
>gi|449469074|ref|XP_004152246.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein
A-like [Cucumis sativus]
Length = 248
Score = 265 bits (678), Expect = 9e-69, Method: Compositional matrix adjust.
Identities = 138/239 (57%), Positives = 173/239 (72%), Gaps = 12/239 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++PPN TIYI NLNEKIK EELK+SL +FSQ+G+I +V+A KT K +GQAWVVF EV++
Sbjct: 10 EVPPNMTIYINNLNEKIKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEEVSS 69
Query: 65 ASNAVRQMQNFPFYD------KPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKR 118
A+NA+ F F + K RIQYAK+KSD +AK DGSFVPREK+K+ EEK +K+
Sbjct: 70 ATNALFFFFFFQFLEFXFLFAKFRRIQYAKTKSDIIAKSDGSFVPREKRKRHEEKGRKKK 129
Query: 119 RAEEAQQSSM------ANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSM 172
+A Q+ M A GA ++ S + A PN+ILF+QNLPHETT M
Sbjct: 130 EQHDANQAGMGLNPAFAGAYGATAHSQVPYSGGVMVPEAPAPPNSILFVQNLPHETTPMM 189
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
L+MLF QYPGFKEVRM+EAKPGIAFVE+ D+VQS++AMQALQGFK+ PQN M IT+AKK
Sbjct: 190 LQMLFCQYPGFKEVRMVEAKPGIAFVEYSDEVQSTVAMQALQGFKMNPQNSMLITYAKK 248
>gi|255083026|ref|XP_002504499.1| predicted protein [Micromonas sp. RCC299]
gi|226519767|gb|ACO65757.1| predicted protein [Micromonas sp. RCC299]
Length = 224
Score = 263 bits (672), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 128/228 (56%), Positives = 163/228 (71%), Gaps = 5/228 (2%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
GDIPP TIY+ NLNEK KK+EL +SL +F Q+G+I D+VA K+ KLRGQAWVVF++V
Sbjct: 2 GDIPPCATIYVNNLNEKTKKDELVKSLQAIFGQFGKIIDIVASKSYKLRGQAWVVFADVA 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA 123
+A+ A+R MQ FPFYDKPMRI YAK+KSD AK +G+F P + E +A+RK ++ A
Sbjct: 62 SATAAMRAMQEFPFYDKPMRIAYAKTKSDATAKAEGTFDP--SARDPEMRAKRKAESQAA 119
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
++ S A + G A R T +A PN ILF+Q LP TT++ML MLFQQ+PGF
Sbjct: 120 EKESQAAKAERDAASGVTAKVR---TDPSAPPNEILFVQGLPGATTAAMLSMLFQQFPGF 176
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
KEVRM+EAKPGIAFVEFE D Q+S+A+ LQGFKI P + M + FA K
Sbjct: 177 KEVRMVEAKPGIAFVEFETDAQASVALSGLQGFKINPTHSMTLAFAAK 224
>gi|326507414|dbj|BAK03100.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326528465|dbj|BAJ93414.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 249
Score = 262 bits (670), Expect = 8e-68, Method: Compositional matrix adjust.
Identities = 131/236 (55%), Positives = 170/236 (72%), Gaps = 12/236 (5%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+ PN TIYI NLNEKIK + LK+SL +FSQ+G+I +V+A KT K +GQAWVVF +V +A
Sbjct: 16 VQPNVTIYINNLNEKIKLDALKKSLNAVFSQFGKIIEVLAFKTLKHKGQAWVVFEDVASA 75
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
+ A+++MQ+FPFYDKPM+IQYAK+KSD VAK DG+FVPREK+K+ +EK E+K++ E+
Sbjct: 76 TEALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPREKRKRNDEKPEKKQKREQHHD 135
Query: 126 SSMANGTGAQSNGGTA----------ASFRNANTQETAAPNNILFIQNLPHETTSSMLEM 175
+ A G G + G + E PNNILF+Q LPH+ T+ ML+M
Sbjct: 136 VNQA-GVGMHAYPGAYGAPPLSQLPFGAGPKVMMPEIIVPNNILFVQELPHDATALMLQM 194
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F QYPGFKEVRMIEAKPGIAFVE+ D+ Q++ AM LQGFKI +NPM IT+AKK
Sbjct: 195 FFCQYPGFKEVRMIEAKPGIAFVEYGDEGQATAAMNLLQGFKIK-ENPMRITYAKK 249
>gi|302769730|ref|XP_002968284.1| hypothetical protein SELMODRAFT_409510 [Selaginella moellendorffii]
gi|302788648|ref|XP_002976093.1| hypothetical protein SELMODRAFT_175284 [Selaginella moellendorffii]
gi|300156369|gb|EFJ22998.1| hypothetical protein SELMODRAFT_175284 [Selaginella moellendorffii]
gi|300163928|gb|EFJ30538.1| hypothetical protein SELMODRAFT_409510 [Selaginella moellendorffii]
Length = 235
Score = 262 bits (669), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 128/229 (55%), Positives = 166/229 (72%), Gaps = 17/229 (7%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
++PPNQTIYI NLNEKIKK+EL +SL +FSQ+G I D+VA K+ KL+GQAWVVF +VT
Sbjct: 23 SEVPPNQTIYINNLNEKIKKDELVKSLRAVFSQFGNILDIVACKSLKLKGQAWVVFEDVT 82
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE-RKRRAEE 122
AA+NA+RQMQ FPFYDK +RIQYAK+KSD VAK DG+F+P+EK+KK +EKAE RKR E
Sbjct: 83 AATNALRQMQEFPFYDKALRIQYAKTKSDAVAKLDGTFIPKEKRKKIDEKAEKRKREHHE 142
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
+ T + E A PNNILF+Q LPH+T+S+ L+MLF PG
Sbjct: 143 SHSYHYPMRT---------------SVPEIALPNNILFVQKLPHDTSSAQLQMLFSSIPG 187
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
FKEVRM++AKPGIAFVE+ + Q+S+A F++ ++PM IT+AK+
Sbjct: 188 FKEVRMVDAKPGIAFVEYAEVDQASVAKSTFHAFRVN-ESPMHITYAKR 235
>gi|357134589|ref|XP_003568899.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Brachypodium
distachyon]
Length = 251
Score = 260 bits (665), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 131/233 (56%), Positives = 165/233 (70%), Gaps = 9/233 (3%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEK K EELK+SL +FSQ+G+I +V+A KT K +GQAWVVF +V +A+
Sbjct: 19 PNVTIYINNLNEKTKLEELKKSLNAVFSQFGKILEVLAFKTLKHKGQAWVVFEDVASATE 78
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+++MQ+FPFYDKPM+IQYAK+KSD VAK DG+FVPRE++K+ +EK E+K++ E+ S
Sbjct: 79 ALKRMQDFPFYDKPMKIQYAKTKSDVVAKADGTFVPRERRKRTDEKPEKKQKREQHHDVS 138
Query: 128 MAN-GTGAQSNGGTAASFR--------NANTQETAAPNNILFIQNLPHETTSSMLEMLFQ 178
G A A E PNNILF+QNLPH+TT ML+MLF
Sbjct: 139 QGTLGMNAYPGAYGAPPLSQLPFGGGPKVMMPEIIVPNNILFVQNLPHDTTPMMLQMLFC 198
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QY GFKE RMIEAKPGIAFVE+ D+ Q++ AM ALQ FKI+ N M IT+AKK
Sbjct: 199 QYQGFKEARMIEAKPGIAFVEYGDEGQATAAMSALQNFKISKDNLMLITYAKK 251
>gi|302820252|ref|XP_002991794.1| hypothetical protein SELMODRAFT_236385 [Selaginella moellendorffii]
gi|300140475|gb|EFJ07198.1| hypothetical protein SELMODRAFT_236385 [Selaginella moellendorffii]
Length = 228
Score = 260 bits (664), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 124/230 (53%), Positives = 170/230 (73%), Gaps = 6/230 (2%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
DI PN+TIYIKNLN K+KK+E+KR+L+ LFS YGRI DVV KTPKLRGQAWVVF+E+
Sbjct: 2 ADILPNETIYIKNLNSKVKKQEMKRALHALFSAYGRILDVVVCKTPKLRGQAWVVFNEIP 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKA-ERKRRAE 121
AA++A+R M+ F +D+PM IQYAKSKSD ++ D S+ P+EK++K E+K ++KR+ +
Sbjct: 62 AATSALRHMKEFQLFDRPMVIQYAKSKSDAIISLTDDSYAPKEKRRKTEDKGVDKKRKDQ 121
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
E Q++ A + G + N + PN+ILFIQNLP ETT MLEMLF +YP
Sbjct: 122 EQPQANGATPAHSHVYGAAPPPVKPGNQE----PNSILFIQNLPDETTGPMLEMLFTRYP 177
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G K+VRM++ +PGIAFVE+ D+ Q+++A++ALQ FKIT + M I++AKK
Sbjct: 178 GLKDVRMVDGRPGIAFVEYSDEGQATVALEALQSFKITANHAMVISYAKK 227
>gi|15226631|ref|NP_182280.1| spliceosomal protein U1A [Arabidopsis thaliana]
gi|75319458|sp|Q39244.1|RU1A_ARATH RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
protein A
gi|1050430|emb|CAA90283.1| U1snRNP-specific protein [Arabidopsis thaliana]
gi|2529669|gb|AAC62852.1| small nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gi|15450591|gb|AAK96567.1| At2g47580/T30B22.12 [Arabidopsis thaliana]
gi|16649011|gb|AAL24357.1| small nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gi|20259986|gb|AAM13340.1| small nuclear ribonucleoprotein U1A [Arabidopsis thaliana]
gi|22655484|gb|AAM98334.1| At2g47580/T30B22.12 [Arabidopsis thaliana]
gi|330255767|gb|AEC10861.1| spliceosomal protein U1A [Arabidopsis thaliana]
Length = 250
Score = 259 bits (661), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 137/239 (57%), Positives = 170/239 (71%), Gaps = 13/239 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ PNQTIYI NLNEK+K +ELK+SL +FSQ+G+I +++A KT K +GQAWVVF +
Sbjct: 13 EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
AS A+ +M NFPFYDK MRIQYAK+KSD VAK DG+FVPREK+K+ EEK K++ ++
Sbjct: 73 ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132
Query: 125 QSS---MANGTGAQSNGGTAASFRNA--------NTQET-AAPNNILFIQNLPHETTSSM 172
S+ M + G A N E A PNNILF+QNLPHETT +
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
L+MLF QY GFKEVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI QN M IT+AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250
>gi|302816013|ref|XP_002989686.1| hypothetical protein SELMODRAFT_184747 [Selaginella moellendorffii]
gi|300142463|gb|EFJ09163.1| hypothetical protein SELMODRAFT_184747 [Selaginella moellendorffii]
Length = 228
Score = 258 bits (658), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 129/231 (55%), Positives = 171/231 (74%), Gaps = 8/231 (3%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
DI PN+TIYIKNLN K+KK+E+KR+L+ LFS YGRI DVV KTPKLRGQAWVVF+E+
Sbjct: 2 ADILPNETIYIKNLNSKVKKQEMKRALHALFSAYGRILDVVVCKTPKLRGQAWVVFNEIP 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAEE 122
AA++A+R M+ F +D+PM IQYAKSKSD ++ D S+ P+EK++K E+K K+R +
Sbjct: 62 AATSALRHMKEFQLFDRPMVIQYAKSKSDAIISLTDDSYAPKEKRRKTEDKGVDKKRKD- 120
Query: 123 AQQSSMANG-TGAQSNG-GTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
Q+ ANG T A + G A TQE PN+ILFIQNLP ET+ MLEMLF +Y
Sbjct: 121 -QEQPQANGATPAHGHVYGAAPPPVKPGTQE---PNSILFIQNLPDETSGPMLEMLFTRY 176
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PG K+VRM++ +PGIAFVE+ D+ Q+++A++ALQ FKIT + M I++AKK
Sbjct: 177 PGLKDVRMVDGRPGIAFVEYSDEGQATVALEALQSFKITANHAMVISYAKK 227
>gi|380024353|ref|XP_003695965.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Apis
florea]
Length = 231
Score = 255 bits (652), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 134/235 (57%), Positives = 169/235 (71%), Gaps = 13/235 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIAS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ-----EEKAER-KR 118
A+NA+R MQ FPFYDKPMRIQYAK+ SD +AK G++ R KK K+ +E+A+R K+
Sbjct: 62 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYAERPKKPKRVVPAADEEAKRAKK 121
Query: 119 RAEEAQQSSMANG--TGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
RA+E + S G TG Q + G N E PN ILF+ NLP ET+ ML ML
Sbjct: 122 RAKEQAKHSQQIGYHTGVQQHPGLV----NTAVPEQ-PPNQILFLTNLPDETSEMMLSML 176
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F Q+PGFKEVR++ + IAFVEFE++VQS A ALQGFKITP + M I+FAKK
Sbjct: 177 FNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 231
>gi|297824861|ref|XP_002880313.1| hypothetical protein ARALYDRAFT_483938 [Arabidopsis lyrata subsp.
lyrata]
gi|297326152|gb|EFH56572.1| hypothetical protein ARALYDRAFT_483938 [Arabidopsis lyrata subsp.
lyrata]
Length = 249
Score = 255 bits (651), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 136/238 (57%), Positives = 170/238 (71%), Gaps = 12/238 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ PNQTIYI NLNEK+K +ELK+SL +FSQ+G+I +++A KT K +GQAWVVF +
Sbjct: 13 EVSPNQTIYINNLNEKVKIDELKKSLNAVFSQFGKILEILAFKTLKHKGQAWVVFDNADS 72
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
AS A+ +M +FPFYDK MRIQYAK+KSD VAK DG+FVPREK+K+ EEK +K++
Sbjct: 73 ASTAIAKMNDFPFYDKNMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGKKKKDHHHD 132
Query: 125 QSSMANGTGAQSNG--GTAASFRNA--------NTQET-AAPNNILFIQNLPHETTSSML 173
+ M T + G G A N E A PNNILF+QNLPHETT +L
Sbjct: 133 STQMGMATNSAYPGVYGAAPPLSQVPYPGGVKPNLPEAPAPPNNILFVQNLPHETTPMVL 192
Query: 174 EMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+MLF QY GFKEVRM+EAKPGIAFVEF D++QS++AMQ LQGFKI QN M IT+AKK
Sbjct: 193 QMLFYQYQGFKEVRMVEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 249
>gi|168028479|ref|XP_001766755.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162681964|gb|EDQ68386.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 235
Score = 254 bits (648), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 142/235 (60%), Positives = 180/235 (76%), Gaps = 4/235 (1%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+ D PPNQTIYI NLNEK+KKEELK+SLY +FSQ+G+I D+VA KT KLRGQAWVVF
Sbjct: 1 MMQADTPPNQTIYINNLNEKVKKEELKKSLYAVFSQFGKIMDIVACKTLKLRGQAWVVFD 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
+VTAA++A+RQMQ FPFYDKPMRIQYAK+ SD ++K +G++VP+EK+KKQEEKAERKRR
Sbjct: 61 DVTAATSALRQMQGFPFYDKPMRIQYAKTTSDAISKANGTYVPKEKRKKQEEKAERKRRE 120
Query: 121 EEAQQSSMANGTGAQSNGGTAAS----FRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
++ + + G R + A PNNILF+QNLPHE TS +++L
Sbjct: 121 QQVEAPTAPPPAAYPPPYGVPPHQYQPPRPVVPEAPAPPNNILFVQNLPHEATSLAIQVL 180
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
FQQ+PGFKEVRMIEAKPGIAFVEF D++Q+++A+Q L FKITP M +++AKK
Sbjct: 181 FQQFPGFKEVRMIEAKPGIAFVEFGDELQATVALQGLHNFKITPNQAMQVSYAKK 235
>gi|270047496|ref|NP_001161808.1| U1 small nuclear ribonucleoprotein A [Apis mellifera]
Length = 231
Score = 253 bits (645), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 133/235 (56%), Positives = 168/235 (71%), Gaps = 13/235 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLN KIKK+ELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNNTIYINNLNVKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIAS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ-----EEKAER-KR 118
A+NA+R MQ FPFYDKPMRIQYAK+ SD +AK G++ R KK K+ +E+A+R K+
Sbjct: 62 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYAERPKKPKRVVPAADEEAKRAKK 121
Query: 119 RAEEAQQSSMANG--TGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
RA+E + S G TG Q + G N E PN ILF+ NLP ET+ ML ML
Sbjct: 122 RAKEQAKHSQQIGYHTGVQQHPGLV----NTAVPEQ-PPNQILFLTNLPDETSEMMLSML 176
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F Q+PGFKEVR++ + IAFVEFE++VQS A ALQGFKITP + M I+FAKK
Sbjct: 177 FNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 231
>gi|307195443|gb|EFN77329.1| U2 small nuclear ribonucleoprotein B'' [Harpegnathos saltator]
Length = 231
Score = 252 bits (644), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 131/233 (56%), Positives = 166/233 (71%), Gaps = 9/233 (3%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ-----EEKAER-KR 118
A+NA+R MQ FPFYDKPMRIQYAK+ SD +AK G+F R KK K+ +E+A+R K+
Sbjct: 62 ATNALRSMQGFPFYDKPMRIQYAKTDSDLIAKMKGTFAERPKKPKRVVPAADEEAKRAKK 121
Query: 119 RAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQ 178
RA+E Q+ + G + N E PN ILF+ NLP ET+ ML MLF
Sbjct: 122 RAKE--QAKHSQQIGYHAGVPQHPGLVNTAVPEQ-PPNQILFLTNLPDETSEMMLSMLFN 178
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
Q+PGFKEVR++ + IAFVEFE++VQS A ALQGFKITP + M I+FAKK
Sbjct: 179 QFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 231
>gi|383847977|ref|XP_003699629.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Megachile
rotundata]
Length = 231
Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 131/235 (55%), Positives = 165/235 (70%), Gaps = 13/235 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIAS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK-------QEEKAERK 117
A+NA+R MQ FPFYDKPMRIQYAK+ SD +AK G++ R KK K +E K +K
Sbjct: 62 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYAERPKKPKRVVPAADEEAKRAKK 121
Query: 118 RRAEEAQQS-SMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
R E+A+ S ++ G + G NA E PN ILF+ NLP ET+ ML ML
Sbjct: 122 RAKEQAKHSQQISYHAGVPQHPGLV----NAAVPEQ-PPNQILFLTNLPDETSEMMLSML 176
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F Q+PGFKEVR++ + IAFVEFE++VQS A ALQGFKITP + M I+FAKK
Sbjct: 177 FNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 231
>gi|303281170|ref|XP_003059877.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226458532|gb|EEH55829.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 224
Score = 252 bits (643), Expect = 9e-65, Method: Compositional matrix adjust.
Identities = 130/228 (57%), Positives = 173/228 (75%), Gaps = 5/228 (2%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
GDIPP TIY+ NLNEKIKKEELK+SL+ +FSQ+G+I DVVA+KT KLRGQAWVVF +V
Sbjct: 2 GDIPPCPTIYVNNLNEKIKKEELKKSLHAVFSQFGKIIDVVAVKTYKLRGQAWVVFQDVA 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA 123
+A+ A+R +Q FPF+DKPM++ YAK+KSD AK DG++ P + E +A+RK ++
Sbjct: 62 SATAAMRAVQGFPFFDKPMKLAYAKAKSDATAKLDGTYDPSARDP--EARAKRKAASQAE 119
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
+++S A A++ GG +A R T +A PN ILF+Q LP TT++ML MLFQQ+PGF
Sbjct: 120 EKASQAAKAEAEARGGGSAPIR---TDPSAPPNEILFVQGLPEATTAAMLSMLFQQFPGF 176
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
KEVRM+EAKPGIAFVEF + Q+S+A+Q LQGFKI P + M +++AKK
Sbjct: 177 KEVRMVEAKPGIAFVEFTAETQASVALQGLQGFKINPTHSMTLSYAKK 224
>gi|340726396|ref|XP_003401545.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Bombus
terrestris]
gi|350423999|ref|XP_003493658.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Bombus
impatiens]
Length = 233
Score = 251 bits (642), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 130/233 (55%), Positives = 166/233 (71%), Gaps = 9/233 (3%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 4 DIRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIAS 63
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ-----EEKAER-KR 118
A+NA+R MQ FPFYDKPMRIQYAK+ SD +AK G++ R KK K+ +E+A+R K+
Sbjct: 64 ATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYAERPKKPKRVVPAADEEAKRAKK 123
Query: 119 RAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQ 178
RA+E Q+ + G + N E PN ILF+ NLP ET+ ML MLF
Sbjct: 124 RAKE--QAKHSQQIGYHAGVPQHPGLVNTAVPEQ-PPNQILFLTNLPDETSEMMLSMLFN 180
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
Q+PGFKEVR++ + IAFVEFE++VQS A ALQGFKITP + M I+FAKK
Sbjct: 181 QFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 233
>gi|156548050|ref|XP_001606482.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Nasonia vitripennis]
gi|345485456|ref|XP_003425274.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Nasonia vitripennis]
Length = 230
Score = 245 bits (625), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 132/234 (56%), Positives = 164/234 (70%), Gaps = 12/234 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIAS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKA-------ERK 117
A+NA+R MQ FPFYDKPMRI Y+K+ SD +AK G+F R KK K+ A +K
Sbjct: 62 ATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPKRVIPAADEEAKKAKK 121
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
R E+A+Q M GA + G A NA E PN ILF+ NLP ET+ ML MLF
Sbjct: 122 RAKEQAKQQQMGYTPGAAQHAGMA----NAAVPEQ-PPNQILFLTNLPDETSEMMLSMLF 176
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
Q+PGFKEVR++ + IAFVEFE++VQS A ALQGFKITP + M I+FAKK
Sbjct: 177 NQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 230
>gi|395859649|ref|XP_003802146.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Otolemur
garnettii]
Length = 231
Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust.
Identities = 120/225 (53%), Positives = 160/225 (71%), Gaps = 2/225 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPSAKKAVQG 127
Query: 127 SMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEV 186
A G A + E PN+ILF+ NLP ET ML MLF Q+PGFKEV
Sbjct: 128 GAAAPVVGAVQGPVPAPILSWQLSEN-PPNHILFLTNLPEETNELMLSMLFNQFPGFKEV 186
Query: 187 RMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
R++ + IAFVEF+++VQ+ A ALQGFKIT N M I+FAKK
Sbjct: 187 RLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 231
>gi|405974726|gb|EKC39350.1| U1 small nuclear ribonucleoprotein A [Crassostrea gigas]
Length = 541
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 122/231 (52%), Positives = 161/231 (69%), Gaps = 4/231 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D PNQTIYI NLNEK+KK+ELK+SLY +FSQ+G+I D+VA+KT K+RGQA+V+F ++ +
Sbjct: 311 DARPNQTIYINNLNEKVKKDELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKDINS 370
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A++A+R MQ FPFY+KPMRIQY+K SD +AK G+FV R K+ K+ E +K++ Q
Sbjct: 371 ANSALRSMQGFPFYEKPMRIQYSKKDSDIIAKMKGTFVERPKRPKEHEPESKKKKKANRQ 430
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAA----PNNILFIQNLPHETTSSMLEMLFQQY 180
++ G + AA+ TA PN ILF+ NLP ET ML MLF Q+
Sbjct: 431 AAATTAGIAPPAQPAMAAAPPAQPAAPTAIPEQPPNQILFLTNLPEETNEMMLSMLFNQF 490
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PGFKEVR++ + IAFVEFE++VQS A ALQGFKITP N M I++AKK
Sbjct: 491 PGFKEVRLVPGRHDIAFVEFENEVQSGAAKDALQGFKITPSNAMKISYAKK 541
>gi|323450983|gb|EGB06862.1| hypothetical protein AURANDRAFT_28680 [Aureococcus anophagefferens]
Length = 214
Score = 241 bits (615), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 117/226 (51%), Positives = 157/226 (69%), Gaps = 15/226 (6%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+ PNQT+YI NLNEKIKK+ LK+S+Y +FSQ+G+I DVV + KLRGQAWVVF++V AA
Sbjct: 4 VQPNQTVYINNLNEKIKKDALKKSIYSVFSQFGKILDVVCCRGLKLRGQAWVVFADVGAA 63
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
+NA+RQMQ FPF+DKPMRI +AK+KSD V+K DGSFV REK+K++ + E +
Sbjct: 64 TNALRQMQGFPFFDKPMRIAFAKAKSDVVSKADGSFVAREKRKREAPPPKAPPATEALEA 123
Query: 126 SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE 185
A + A + A P+N+LF Q+LP + ML +LFQQY GFKE
Sbjct: 124 PKPA---------------KAAKADKNATPSNVLFAQDLPDDCNDMMLSILFQQYGGFKE 168
Query: 186 VRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
VRM+ K GIAFVEF D+ Q+S+A+Q L FK+TP + +A++FAK+
Sbjct: 169 VRMVPGKKGIAFVEFADETQASLALQGLDNFKLTPTDTLALSFAKR 214
>gi|426388779|ref|XP_004060810.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Gorilla
gorilla gorilla]
Length = 229
Score = 239 bits (609), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 118/227 (51%), Positives = 160/227 (70%), Gaps = 8/227 (3%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+++ RK +++E +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREK-----RKPKSQETPATK 122
Query: 128 MANGTGAQSNGGTAASFRNANTQETAA---PNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
A G A ++ T + PN+ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 123 KAGQYYGSPTGLRALVLTDSPTPPQLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFK 182
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEF+++VQ+ A ALQGFKIT N M I+FAKK
Sbjct: 183 EVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 229
>gi|440355222|gb|AGC00413.1| SNF [Antheraea pernyi]
Length = 222
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 160/227 (70%), Gaps = 6/227 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+++
Sbjct: 2 DIRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEISS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+ A+R MQ FPFYDKPMRIQY+K+ SD +AK G+F R K+ K + + ++ +
Sbjct: 62 ATVALRSMQGFPFYDKPMRIQYSKTDSDVIAKIKGTFQERPKRPKMPKGTDDSKKKKGKD 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
S GA + G N N ++ PN ILF+ NLP T+ ML MLF Q+PGFK
Sbjct: 122 VSRPGAVHGANAPG----VLNNINVEQ--PPNQILFLTNLPDGTSEMMLSMLFNQFPGFK 175
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEF +++QS+ A +ALQGFKITP + M ITFAKK
Sbjct: 176 EVRLVPNRHDIAFVEFGNEMQSAAAKEALQGFKITPTHAMKITFAKK 222
>gi|384251055|gb|EIE24533.1| U1 small nuclear ribonucleo protein A [Coccomyxa subellipsoidea
C-169]
Length = 224
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 119/232 (51%), Positives = 162/232 (69%), Gaps = 13/232 (5%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
DI PNQTIY+ NL EKIKKE+LK+S+Y +FSQ+G+I DVVALKT +LRGQAWVVF++
Sbjct: 2 ADIAPNQTIYVNNLPEKIKKEDLKKSIYAIFSQFGKILDVVALKTYRLRGQAWVVFADQK 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQE----EKAERKRR 119
+A +A+R MQ FPF++KP+R+ YAK +SD VAK F ++KK++Q+ E+ + + R
Sbjct: 62 SADDAIRSMQGFPFFEKPIRLSYAKGESDAVAKLHNRFEEKDKKERQKHNKLERVKGRHR 121
Query: 120 AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQ 179
QQ + + AA N A P+ ILF+QNLP ETTS+ML +LFQQ
Sbjct: 122 EHRLQQQPLWCASII-----LAAPIAPGN----APPHKILFVQNLPEETTSAMLALLFQQ 172
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
Y G+ E RM+EA+PGIAFVEFED+ ++++AM LQGFKIT N I++A +
Sbjct: 173 YAGYIETRMVEARPGIAFVEFEDEDKATVAMAGLQGFKITATNAFTISYANR 224
>gi|58394659|ref|XP_320869.2| AGAP011637-PA [Anopheles gambiae str. PEST]
gi|55235062|gb|EAA00418.2| AGAP011637-PA [Anopheles gambiae str. PEST]
Length = 216
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 158/227 (69%), Gaps = 12/227 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLNEKI K ELK+SLY +FSQ+G+I D+VA KT K+RGQA+++F E+++
Sbjct: 2 DIRPNHTIYINNLNEKINKVELKKSLYAIFSQFGQILDIVAYKTLKMRGQAFIIFKEISS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+R MQ FPFYDKPMRI+Y+K+ SD +AK G+F R K+ KQ + + + + +A+
Sbjct: 62 ATNAMRTMQGFPFYDKPMRIKYSKTDSDMIAKLKGTFQERPKRVKQPKPIQTEDK--KAK 119
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ A GA +N TA PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 120 KLKNAGEVGATNNSATAEQ----------PPNQILFLTNLPEETNEMMLSMLFNQFPGFK 169
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEF ++QS A +ALQGFKITP + M I+FAKK
Sbjct: 170 EVRLVPNRHDIAFVEFATELQSGAAREALQGFKITPTHAMKISFAKK 216
>gi|242247219|ref|NP_001156146.1| U1 small nuclear ribonucleoprotein A-like [Acyrthosiphon pisum]
gi|239790514|dbj|BAH71814.1| ACYPI003668 [Acyrthosiphon pisum]
Length = 224
Score = 238 bits (608), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 124/232 (53%), Positives = 165/232 (71%), Gaps = 15/232 (6%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D PN TIYI NLNEKIKK++LK+SLY +FSQ+G+I D+VA+K K+ GQA+V+F ++T+
Sbjct: 3 DTRPNHTIYINNLNEKIKKDDLKKSLYAIFSQFGQILDIVAMKGIKMNGQAFVIFKDITS 62
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPRE---KKKKQEEKAERKRRAE 121
++NA+R MQ FPFYDKPMRIQ+AKS+SD +AK G+FV R+ KK K +E+A+++R+A
Sbjct: 63 STNALRAMQGFPFYDKPMRIQFAKSESDIIAKMKGTFVERQKKPKKPKDDEEAKKRRKAA 122
Query: 122 EAQQSSMA--NGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQ 179
+ Q ++A N G S G PN ILF+ NLP ETT ML MLF Q
Sbjct: 123 KEQARALAQQNNPGGVSGGNVPEQ----------PPNQILFLTNLPDETTEMMLSMLFNQ 172
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+PGFKEVR++ + IAFVEFE++ QS+ A +L GFKITP + M ITFAKK
Sbjct: 173 FPGFKEVRLVPNRHDIAFVEFENEHQSNTAKLSLNGFKITPTHAMKITFAKK 224
>gi|291234607|ref|XP_002737237.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Saccoglossus
kowalevskii]
Length = 249
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 123/249 (49%), Positives = 166/249 (66%), Gaps = 23/249 (9%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D PN TIYI NLNEK+KK+ELK+SLY +FSQ+G+I D+VA+KT K+RGQA+V+F E+++
Sbjct: 2 DTRPNHTIYINNLNEKVKKDELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+R MQ FPFYDKPMRI Y+K+ SD +AK G+FV R+++KK+ E+ K +A++ +
Sbjct: 62 ATNALRSMQGFPFYDKPMRIGYSKTDSDVIAKMKGTFVERKREKKKTEEIA-KTQAKKPK 120
Query: 125 QSSMANGTGAQS--------------NGGTAASFRNANTQETAA--------PNNILFIQ 162
+ G QS N G + + AA PNNILF+
Sbjct: 121 NMVSGSAPGQQSGPGAGGAAGGAQIPNMGLPSLMSQPPPMQQAAPQSVQEQPPNNILFLT 180
Query: 163 NLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN 222
NLP ET ML+MLF Q+ FKEVR++ + IAFVEFE++ Q+ +A ALQGFKITP N
Sbjct: 181 NLPEETNEMMLQMLFNQFQAFKEVRLVPGRHDIAFVEFENETQAGVAKDALQGFKITPSN 240
Query: 223 PMAITFAKK 231
M I+FAKK
Sbjct: 241 AMKISFAKK 249
>gi|225710606|gb|ACO11149.1| U1 small nuclear ribonucleoprotein A [Caligus rogercresseyi]
Length = 217
Score = 238 bits (607), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 122/227 (53%), Positives = 159/227 (70%), Gaps = 11/227 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PN TIYI NLNEK+KK++LK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+T+
Sbjct: 2 DVRPNHTIYINNLNEKVKKDDLKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEITS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
+NA+R MQ FPFYDKPMRI ++K+ SD +AK G+F R KK + K +K+ A+EA
Sbjct: 62 GTNALRSMQGFPFYDKPMRISFSKTDSDIIAKLKGTFTERPKKASGDSKKAKKKAAKEAA 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ GA NA A PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 ARQLCALAGA-----------NAVHPGEAPPNQILFLTNLPDETNEMMLSMLFNQFPGFK 170
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE++VQS+ A ++LQGFKITP M I+FAKK
Sbjct: 171 EVRLVPNRHDIAFVEFENEVQSAAARESLQGFKITPNASMKISFAKK 217
>gi|90077244|dbj|BAE88302.1| unnamed protein product [Macaca fascicularis]
Length = 197
Score = 238 bits (606), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 116/224 (51%), Positives = 152/224 (67%), Gaps = 34/224 (15%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+++
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREK----------------- 110
Query: 128 MANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVR 187
R +QET APN+ILF+ NLP ET ML MLF Q+PGFKEVR
Sbjct: 111 -----------------RKPKSQETPAPNHILFLTNLPEETNELMLSMLFNQFPGFKEVR 153
Query: 188 MIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
++ + IAFVEF+++VQ+ A ALQGFKIT N M I+FAKK
Sbjct: 154 LVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 197
>gi|443720886|gb|ELU10438.1| hypothetical protein CAPTEDRAFT_179768 [Capitella teleta]
Length = 218
Score = 237 bits (605), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 126/229 (55%), Positives = 164/229 (71%), Gaps = 14/229 (6%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLNEKIKK+ELK+SL+ +FSQ+G I D+VALKT K+RGQA+V+F ++++
Sbjct: 2 DIRPNHTIYINNLNEKIKKDELKKSLFAIFSQFGHIIDIVALKTLKMRGQAFVIFKDISS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV--PREKKKKQEEKAERKRRAEE 122
A+NA+R MQ FPFYDKPMRI Y+K SD +AK G+FV P++KKK+ EE A K++ +
Sbjct: 62 ATNALRSMQGFPFYDKPMRINYSKKDSDAIAKMKGTFVERPKKKKKEDEEDAPVKKKKSK 121
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
AQ+ A A + GG P++ILF+ NLP ETT ML MLF Q+PG
Sbjct: 122 AQRREAA--NAAANTGGMPDQ----------PPHHILFLTNLPEETTEMMLSMLFNQFPG 169
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F+EVR++ + IAFVEFE++VQ+ A ALQGFKITP N M I+FAKK
Sbjct: 170 FREVRLVPGRHDIAFVEFENEVQAGAAKDALQGFKITPTNAMKISFAKK 218
>gi|23956110|ref|NP_067310.1| U2 small nuclear ribonucleoprotein B'' [Mus musculus]
gi|52783420|sp|Q9CQI7.1|RU2B_MOUSE RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|12847289|dbj|BAB27510.1| unnamed protein product [Mus musculus]
gi|12851400|dbj|BAB29026.1| unnamed protein product [Mus musculus]
gi|20072417|gb|AAH26794.1| U2 small nuclear ribonucleoprotein B [Mus musculus]
gi|126035620|gb|ABN72533.1| U2 small nuclear ribonucleoprotein B [Mus spretus]
gi|148696479|gb|EDL28426.1| mCG19497, isoform CRA_c [Mus musculus]
Length = 225
Score = 237 bits (604), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 123/236 (52%), Positives = 160/236 (67%), Gaps = 21/236 (8%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F A+++++ E+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF------------ADKEKKKEKKK 109
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAA---------PNNILFIQNLPHETTSSMLEM 175
+M A + + ANTQ TAA PN ILF+ NLP ET ML M
Sbjct: 110 AKTMEQAAAAANKKPGQGTPNAANTQGTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSM 169
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
LF Q+PGFKEVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|449280001|gb|EMC87413.1| U2 small nuclear ribonucleoprotein B'' [Columba livia]
Length = 226
Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 123/228 (53%), Positives = 164/228 (71%), Gaps = 4/228 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EK+K++++ ++ A A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKRKEKKKAKSLEQSANAAN 121
Query: 125 QSSMANGT-GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
+ + T + S GTAA +N + PN ILF+ NLP ET ML MLF Q+PGF
Sbjct: 122 KKVIQGATPNSASAPGTAA--QNQQVPDN-PPNYILFLNNLPEETNEMMLSMLFNQFPGF 178
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
KEVR++ + IAFVEFE++ Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 KEVRLVPGRHDIAFVEFENENQAGAARDALQGFKITPSHAMKITYAKK 226
>gi|157819927|ref|NP_001102062.1| U2 small nuclear ribonucleoprotein B'' [Rattus norvegicus]
gi|354492046|ref|XP_003508163.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Cricetulus
griseus]
gi|149041257|gb|EDL95190.1| rCG27500, isoform CRA_c [Rattus norvegicus]
gi|197245976|gb|AAI68760.1| Small nuclear ribonucleoprotein polypeptide B'' [Rattus norvegicus]
Length = 225
Score = 236 bits (601), Expect = 7e-60, Method: Compositional matrix adjust.
Identities = 122/236 (51%), Positives = 160/236 (67%), Gaps = 21/236 (8%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F A+++++ E+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF------------ADKEKKKEKKK 109
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAA---------PNNILFIQNLPHETTSSMLEM 175
+M A + + +ANTQ AA PN ILF+ NLP ET ML M
Sbjct: 110 AKTMEQAAAAANKKPGQGTPNSANTQGNAAPNPQVPDYPPNYILFLNNLPEETNEMMLSM 169
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
LF Q+PGFKEVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|339255862|ref|XP_003370674.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316965776|gb|EFV50450.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 220
Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 118/228 (51%), Positives = 154/228 (67%), Gaps = 19/228 (8%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
DIPPNQTIY+ NLNEKIKK+ELKR+L+ +F Q+G I D+V LKT K+RGQA++VF ++
Sbjct: 2 ADIPPNQTIYVNNLNEKIKKDELKRALHAVFHQFGTILDIVCLKTLKMRGQAFIVFKDLN 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ------EEKAERK 117
+A+NA+R MQ FPFYDKPMRIQYAKS+SD VAK G++V R K+ ++ E K E+K
Sbjct: 62 SATNALRSMQGFPFYDKPMRIQYAKSESDAVAKLKGTYVERPKEHQRNADLTGESKKEKK 121
Query: 118 RR-AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
RR A E + + GT S + PN ILF NLP E T ML+ML
Sbjct: 122 RRIAAEKARLRASEGTNYVS------------VESNPPPNKILFCTNLPEEATEHMLQML 169
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPM 224
F Q+PGFKEVR++ + IAFVEF+++ QS A LQ FK+TP +P+
Sbjct: 170 FNQFPGFKEVRLVPNRHDIAFVEFDNEYQSKTARDTLQNFKVTPNHPI 217
>gi|332855731|ref|XP_003316404.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Pan
troglodytes]
Length = 227
Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 116/227 (51%), Positives = 157/227 (69%), Gaps = 10/227 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K++ KR+ + + +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKRE-------KRKPKSQETPA 120
Query: 128 MANGTGAQSNGGTAASFRNANTQETAA---PNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
G A ++ T + PN+ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 121 TKKAYYGSPTGLRALVLTDSPTPPQLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFK 180
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEF+++VQ+ A ALQGFKIT N M I+FAKK
Sbjct: 181 EVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 227
>gi|50738734|ref|XP_419331.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Gallus
gallus]
gi|326914835|ref|XP_003203728.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Meleagris
gallopavo]
Length = 226
Score = 235 bits (600), Expect = 9e-60, Method: Compositional matrix adjust.
Identities = 122/228 (53%), Positives = 161/228 (70%), Gaps = 4/228 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EK+K++++ ++ A A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKRKEKKKAKSLEQSANAAN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQ-ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
+ + GA N +A N Q PN ILF+ NLP ET ML MLF Q+PGF
Sbjct: 122 KKII---QGATQNSTSAPGTSPQNQQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGF 178
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
KEVR++ + IAFVEFE++ Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 KEVRLVPGRHDIAFVEFENECQAGAARDALQGFKITPSHAMKITYAKK 226
>gi|12850013|dbj|BAB28565.1| unnamed protein product [Mus musculus]
Length = 225
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/236 (52%), Positives = 159/236 (67%), Gaps = 21/236 (8%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F A+++++ E+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF------------ADKEKKKEKKK 109
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAA---------PNNILFIQNLPHETTSSMLEM 175
+M A + + ANTQ TAA PN ILF+ NLP ET ML M
Sbjct: 110 AKTMEQAAAAANKKPGQGTPNAANTQGTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSM 169
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
LF Q+PGFKEVR++ + IAFVEFE D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFEYDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|449495575|ref|XP_004176204.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Taeniopygia
guttata]
Length = 225
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 159/227 (70%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNINDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EK+K++++ ++ A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKRKEKKKAKTLEQSANAPN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ + GA N +A N PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKVI---QGATQNSASAPGTTPQNQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE++ Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENENQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|149640848|ref|XP_001514376.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Ornithorhynchus anatinus]
gi|345329106|ref|XP_003431335.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like
[Ornithorhynchus anatinus]
Length = 225
Score = 235 bits (599), Expect = 1e-59, Method: Compositional matrix adjust.
Identities = 123/227 (54%), Positives = 161/227 (70%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDLISKMRGTFADKEKKKEKKKAKTVEQAANAAN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ A + G AA +N + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKPGQGAPNAANPQGNAA--QNPQVPDN-PPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|417397429|gb|JAA45748.1| Putative spliceosomal protein snrnp-u1a/u2b [Desmodus rotundus]
Length = 225
Score = 234 bits (598), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 122/227 (53%), Positives = 160/227 (70%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAITAN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G GA ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGAPNSANTQGNATPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|123994687|gb|ABM84945.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
gi|261861662|dbj|BAI47353.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
Length = 225
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 159/227 (70%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ S G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKS---GQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|327260920|ref|XP_003215280.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Anolis
carolinensis]
Length = 224
Score = 234 bits (597), Expect = 2e-59, Method: Compositional matrix adjust.
Identities = 118/227 (51%), Positives = 164/227 (72%), Gaps = 4/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN T+YI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V++ E+ +
Sbjct: 2 DIRPNHTLYINNVNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIYKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EK++++++ ++ A A+
Sbjct: 62 STNALRQLQGFPFYSKPMRIQYAKTDSDVISKMRGTFADKEKRREKKKTKSLEQSANAAK 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ N Q++ T A+ +N + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 K---PNQGANQNSANTQANSQNQQVPDN-PPNYILFLNNLPEETNEMMLSMLFNQFPGFK 177
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE++ Q+ A ALQGFKITP + M IT+AKK
Sbjct: 178 EVRLVPGRHDIAFVEFENEGQAGAARDALQGFKITPSHAMKITYAKK 224
>gi|351695324|gb|EHA98242.1| U2 small nuclear ribonucleoprotein B'' [Heterocephalus glaber]
Length = 224
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 159/227 (70%), Gaps = 4/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTAN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G + + N + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGISTTNTQGNATTNPQVPD-YPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 177
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 178 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 224
>gi|348581624|ref|XP_003476577.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Cavia
porcellus]
Length = 224
Score = 234 bits (596), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/228 (53%), Positives = 160/228 (70%), Gaps = 6/228 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAMTAN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQ-ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
+ + A + G A N Q PN ILF+ NLP ET ML MLF Q+PGF
Sbjct: 122 KKPGQGISTANTQGNVA-----PNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGF 176
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
KEVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 177 KEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 224
>gi|395507829|ref|XP_003758221.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Sarcophilus
harrisii]
Length = 225
Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 159/227 (70%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDVISKMRGTFADKEKKKEKKKAKSLEQTANAAN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G A ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQAAPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|444729539|gb|ELW69952.1| U2 small nuclear ribonucleoprotein B'' [Tupaia chinensis]
Length = 225
Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 159/227 (70%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQAATTAN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|225719682|gb|ACO15687.1| U1 small nuclear ribonucleoprotein A [Caligus clemensi]
Length = 217
Score = 233 bits (595), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 123/227 (54%), Positives = 160/227 (70%), Gaps = 11/227 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ PN TIYI NLNEK+KK++LK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+T+
Sbjct: 2 EVRPNHTIYINNLNEKVKKDDLKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEITS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+R MQ FPFYDKPMRI ++KS SD +AK G+F R KK + K +K+ A+EA
Sbjct: 62 ATNALRSMQGFPFYDKPMRITFSKSDSDVIAKIKGTFTERPKKAAGDSKKAKKKAAKEAA 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ GA NA A PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 ARQLCALAGA-----------NAVHPGEAPPNQILFLTNLPDETNEMMLSMLFNQFPGFK 170
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE++VQS+ A ++LQGFKITP M I+FAKK
Sbjct: 171 EVRLVPNRHDIAFVEFENEVQSAAARESLQGFKITPNASMKISFAKK 217
>gi|395858003|ref|XP_003801365.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Otolemur
garnettii]
Length = 225
Score = 233 bits (595), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 159/227 (70%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQAATTAN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGIPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|301787297|ref|XP_002929064.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Ailuropoda
melanoleuca]
gi|410954385|ref|XP_003983845.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Felis
catus]
gi|410954387|ref|XP_003983846.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Felis
catus]
gi|281346668|gb|EFB22252.1| hypothetical protein PANDA_019153 [Ailuropoda melanoleuca]
Length = 225
Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 158/227 (69%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTAN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G + T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGTPNAANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|297706381|ref|XP_002830019.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Pongo
abelii]
Length = 225
Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 159/227 (70%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ + + A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVE---QTAT 118
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+S G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 119 TTSKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|55732648|emb|CAH93023.1| hypothetical protein [Pongo abelii]
Length = 225
Score = 233 bits (594), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 159/227 (70%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKK+++++ + + A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKREKKKAKTVE---QTAT 118
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+S G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 119 TTSKKPGQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|354542538|ref|NP_001238897.1| U2 small nuclear ribonucleoprotein B'' [Canis lupus familiaris]
Length = 225
Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 158/227 (69%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTAS 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G + T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGTPNAANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|195995899|ref|XP_002107818.1| hypothetical protein TRIADDRAFT_18899 [Trichoplax adhaerens]
gi|190588594|gb|EDV28616.1| hypothetical protein TRIADDRAFT_18899 [Trichoplax adhaerens]
Length = 204
Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 123/227 (54%), Positives = 161/227 (70%), Gaps = 26/227 (11%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DIPPNQT+Y+ NLNEK+KKEELK+SLY +FSQ+G I D++A+KT K+RGQA+VVF ++++
Sbjct: 4 DIPPNQTLYVNNLNEKVKKEELKKSLYAIFSQFGAILDIIAMKTLKMRGQAFVVFEDISS 63
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+R MQ FPFY+KPMRI Y KSKSD VAK+DGS+VPREKK ++ KR+ +E
Sbjct: 64 ATNALRAMQGFPFYEKPMRITYCKSKSDAVAKKDGSYVPREKKVRE------KRKPDEG- 116
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
M + G+Q PN ILF+ NLP ETT ML MLF Q+PG+K
Sbjct: 117 ---MPHAAGSQEE----------------LPNKILFLTNLPEETTELMLSMLFNQFPGYK 157
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE ++Q++ A +L GFKITP + M I FAKK
Sbjct: 158 EVRLVPGRHDIAFVEFESEIQAATARNSLNGFKITPTHQMNIAFAKK 204
>gi|359718900|ref|NP_001240769.1| U2 small nuclear ribonucleoprotein B'' [Equus caballus]
gi|328908863|gb|AEB61099.1| u2 small nuclear ribonucleoprotein B''-like protein [Equus
caballus]
Length = 225
Score = 233 bits (593), Expect = 6e-59, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 159/227 (70%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTAN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGTPNSVNTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|4507123|ref|NP_003083.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|38149981|ref|NP_937863.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|332238115|ref|XP_003268248.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1
[Nomascus leucogenys]
gi|332238117|ref|XP_003268249.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2
[Nomascus leucogenys]
gi|397478615|ref|XP_003810638.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Pan
paniscus]
gi|397478617|ref|XP_003810639.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Pan
paniscus]
gi|426391004|ref|XP_004061878.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1
[Gorilla gorilla gorilla]
gi|426391006|ref|XP_004061879.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2
[Gorilla gorilla gorilla]
gi|134095|sp|P08579.1|RU2B_HUMAN RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|340105|gb|AAA36796.1| U2 small nuclear ribonucleoprotein B'' [Homo sapiens]
gi|17390031|gb|AAH18022.1| Small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|22477822|gb|AAH36737.1| Small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|119630689|gb|EAX10284.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_a
[Homo sapiens]
gi|119630690|gb|EAX10285.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_a
[Homo sapiens]
gi|123979922|gb|ABM81790.1| small nuclear ribonucleoprotein polypeptide B'' [synthetic
construct]
gi|189066590|dbj|BAG35840.1| unnamed protein product [Homo sapiens]
gi|410226668|gb|JAA10553.1| small nuclear ribonucleoprotein polypeptide B [Pan troglodytes]
gi|410226670|gb|JAA10554.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
gi|410263358|gb|JAA19645.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
gi|410342435|gb|JAA40164.1| small nuclear ribonucleoprotein polypeptide B'' [Pan troglodytes]
Length = 225
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 158/227 (69%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|403283665|ref|XP_003933231.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Saimiri
boliviensis boliviensis]
Length = 225
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 157/227 (69%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK +++ ++ A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKGKKKAKTVEQTATTTN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|116175273|ref|NP_001070696.1| uncharacterized protein LOC768116 [Sus scrofa]
gi|426240670|ref|XP_004014217.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Ovis
aries]
gi|115371759|gb|ABI96204.1| RU2B [Sus scrofa]
Length = 225
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 158/227 (69%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTVN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGTPNSANTQGNATPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|386781069|ref|NP_001247823.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|402883260|ref|XP_003905142.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Papio
anubis]
gi|402883262|ref|XP_003905143.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Papio
anubis]
gi|402883264|ref|XP_003905144.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 3 [Papio
anubis]
gi|355563375|gb|EHH19937.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|380787253|gb|AFE65502.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|383414075|gb|AFH30251.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
gi|384942630|gb|AFI34920.1| U2 small nuclear ribonucleoprotein B'' [Macaca mulatta]
Length = 225
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 158/227 (69%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKAVEQTATTTN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGTPNSANTQGNTTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|114681082|ref|XP_514523.2| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 5 [Pan
troglodytes]
gi|114681084|ref|XP_001137830.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 4 [Pan
troglodytes]
gi|296200238|ref|XP_002747509.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Callithrix jacchus]
gi|296200240|ref|XP_002747510.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 3
[Callithrix jacchus]
Length = 225
Score = 232 bits (592), Expect = 8e-59, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 158/227 (69%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAATTN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|330842469|ref|XP_003293200.1| hypothetical protein DICPUDRAFT_83777 [Dictyostelium purpureum]
gi|325076492|gb|EGC30273.1| hypothetical protein DICPUDRAFT_83777 [Dictyostelium purpureum]
Length = 233
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 117/231 (50%), Positives = 166/231 (71%), Gaps = 10/231 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DIPPNQTIY+ NL EKI K++L+ LY LFS+YG+I ++ A K+ K+RGQA++VF ++T+
Sbjct: 9 DIPPNQTIYVNNLYEKISKKKLREHLYSLFSKYGQILEIEASKSLKMRGQAFIVFKDITS 68
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
ASNA+R+M F F D+PM+IQY+K+KSD V+K DG+++ EKK+++EE E+K ++
Sbjct: 69 ASNALREMNGFNFLDRPMKIQYSKNKSDAVSKLDGTYM--EKKRQREENNEKKINIKKQD 126
Query: 125 QSSMANGTGAQSN-GGTAASFRN--ANTQ-ETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
+ TG Q N G S N +N Q PN LF++NLP + MLEMLF Q+
Sbjct: 127 RKV----TGGQKNKNGETLSVGNIPSNLQPRDLPPNKTLFVENLPDKCDPMMLEMLFSQF 182
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PG+KEV M+E+K GIAFVEF+D+ +S +AMQ+LQ FK+T + PM I+FAK+
Sbjct: 183 PGYKEVHMVESKKGIAFVEFQDESKSGLAMQSLQHFKVTQEKPMVISFAKQ 233
>gi|348538124|ref|XP_003456542.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Oreochromis
niloticus]
Length = 218
Score = 232 bits (591), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 158/227 (69%), Gaps = 10/227 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G++ D+VA+KT K+RGQA+V+F E+ A
Sbjct: 2 DIRPNHTIYINNINDKIKKEELKRSLYALFSQFGQVIDIVAMKTMKMRGQAFVIFKELAA 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+RQ+Q FPFY+KPMRIQYAK+ S+ +AK GS+ +EKKKK+++KA
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKVKGSYGDKEKKKKEKKKA---------- 111
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
Q AN T + G + A PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 112 QELAANATKKPAAGLAPPALTPAVQVPDNPPNYILFLSNLPEETNEMMLSMLFNQFPGFK 171
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ K IAFVEFE D Q+ +A ALQGF+IT M IT+AKK
Sbjct: 172 EVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCAMKITYAKK 218
>gi|440893400|gb|ELR46188.1| U2 small nuclear ribonucleoprotein B'', partial [Bos grunniens
mutus]
Length = 233
Score = 231 bits (590), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 158/227 (69%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 10 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 69
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A
Sbjct: 70 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTVN 129
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 130 KKP---GQGTPNSANTQGNATPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 186
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 187 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 233
>gi|344279401|ref|XP_003411476.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Loxodonta
africana]
Length = 225
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 121/230 (52%), Positives = 158/230 (68%), Gaps = 9/230 (3%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAATTN 121
Query: 125 QS---SMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
+ N AQ N + + PN ILF+ NLP ET ML MLF Q+P
Sbjct: 122 KKPGQGTPNSANAQGNSTPSPQVPD------YPPNYILFLNNLPEETNEMMLSMLFNQFP 175
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
GFKEVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 176 GFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|426246411|ref|XP_004016988.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Ovis aries]
Length = 225
Score = 231 bits (589), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 119/227 (52%), Positives = 157/227 (69%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTVN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGTPNSANTQGNATPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAGRDALQGFKITPSHAMKITYAKK 225
>gi|387018112|gb|AFJ51174.1| u2 small nuclear ribonucleoprotein B-like [Crotalus adamanteus]
Length = 225
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 116/228 (50%), Positives = 160/228 (70%), Gaps = 5/228 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN T+YI N+N+KIKK+ELKRSLY LFSQ+G + D+VALKT K+RGQA+++F E+ +
Sbjct: 2 DIRPNHTLYINNVNDKIKKDELKRSLYALFSQFGHVVDIVALKTMKMRGQAFIIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+RQ+Q FPFY KPMRIQYAK+ S+ ++K G+F K++ ++ ++ + E+A
Sbjct: 62 ATNALRQLQGFPFYGKPMRIQYAKTDSEVISKMRGTFA----DKEKRKEKKKTKSLEQAA 117
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQ-ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
++ GA N A + N Q PN+ILF+ NLP ET ML MLF Q+PGF
Sbjct: 118 NANKKPNQGANQNSTNAQGNASQNQQVPDNPPNHILFLNNLPEETNEMMLSMLFNQFPGF 177
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
KEVR++ + I+FVEFE++ Q+ A ALQGFKITP + M IT+AKK
Sbjct: 178 KEVRLVPGRHDISFVEFENEGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|290562822|gb|ADD38806.1| U1 small nuclear ribonucleoprotein A [Lepeophtheirus salmonis]
Length = 217
Score = 231 bits (588), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 122/227 (53%), Positives = 158/227 (69%), Gaps = 11/227 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D P+ TIYI NLNEK+KKE+LK+SLY +FSQ+G+I ++VALKT K+RGQA+V+F E+T+
Sbjct: 2 DARPSHTIYINNLNEKVKKEDLKKSLYAIFSQFGQILEIVALKTLKMRGQAFVIFKEITS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+R MQ FPFYDKPMRI ++K+ SD +AK G++ R KK + K +KR A+EA
Sbjct: 62 ATNAMRSMQGFPFYDKPMRIAFSKTDSDVIAKIKGTYQERPKKAASDSKKAKKRAAKEAA 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ GA NA A PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 ARQICALAGA-----------NAVHPGEAPPNQILFLTNLPDETNEMMLSMLFNQFPGFK 170
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE++VQS+ A +LQGFKITP M I+FAKK
Sbjct: 171 EVRLVPNRHDIAFVEFENEVQSAAARGSLQGFKITPNASMKISFAKK 217
>gi|291389004|ref|XP_002711008.1| PREDICTED: small nuclear ribonucleoprotein polypeptide B''
[Oryctolagus cuniculus]
Length = 225
Score = 231 bits (588), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 123/230 (53%), Positives = 161/230 (70%), Gaps = 9/230 (3%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQAAAAAN 121
Query: 125 QSS---MANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
+ + N Q+N S N + PN ILF+ NLP ET ML MLF Q+P
Sbjct: 122 KKPGQVIPNSANNQAN-----STPNPQVPDY-PPNYILFLNNLPEETNEMMLSMLFNQFP 175
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
GFKEVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 176 GFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|442760027|gb|JAA72172.1| Putative spliceosomal protein snrnp-u1a/u2b [Ixodes ricinus]
Length = 239
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 119/231 (51%), Positives = 158/231 (68%), Gaps = 9/231 (3%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLNEK+KK+ELK+SLY +FSQ+G+I D+VALKT K+RGQA+VVF ++ +
Sbjct: 2 DIRPNHTIYINNLNEKVKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVVFKDLNS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE-KAERKRRAEEA 123
A+NA+R MQ FPFYDKPMRIQY+K+ SD VAK G++V ++K+ + +A K+ ++
Sbjct: 62 ATNALRSMQGFPFYDKPMRIQYSKTDSDAVAKMKGTYVETQRKRPAADGEAAPKKSKKKK 121
Query: 124 QQSSMANGTGA--------QSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEM 175
+A+ T A Q A + PN ILF+ NLP ET ML M
Sbjct: 122 APQHVASATAAVAGPHLQSQPMMMMMAPGAMMGSLPEQPPNQILFLTNLPEETNEMMLSM 181
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226
LF Q+PGFKEVR++ + IAFVEFE+++QSS A +ALQGFKITP + M I
Sbjct: 182 LFNQFPGFKEVRLVPGRHDIAFVEFENEIQSSAAKEALQGFKITPIHAMKI 232
>gi|225719260|gb|ACO15476.1| U1 small nuclear ribonucleoprotein A [Caligus clemensi]
Length = 217
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 159/227 (70%), Gaps = 11/227 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ PN TIYI NLN K++K++LK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+T+
Sbjct: 2 EVRPNHTIYINNLNGKVRKDDLKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEITS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+R MQ FPFYDKPMRI ++KS SD +AK G+F R KK + K +K+ A+EA
Sbjct: 62 ATNALRSMQGFPFYDKPMRITFSKSDSDVIAKIKGTFTERPKKAAGDSKKAKKKAAKEAA 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ GA NA A PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 ARQLCALAGA-----------NAAHPGEAPPNQILFLTNLPDETNEMMLSMLFNQFPGFK 170
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE++VQS+ A ++LQGFKITP M I+FAKK
Sbjct: 171 EVRLVPNRHDIAFVEFENEVQSAAARESLQGFKITPNASMKISFAKK 217
>gi|403263452|ref|XP_003924046.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Saimiri
boliviensis boliviensis]
gi|197692169|dbj|BAG70048.1| small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
gi|197692419|dbj|BAG70173.1| small nuclear ribonucleoprotein polypeptide B'' [Homo sapiens]
Length = 225
Score = 230 bits (587), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 119/227 (52%), Positives = 157/227 (69%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+ +F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFAIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|300796380|ref|NP_001179481.1| U2 small nuclear ribonucleoprotein B'' [Bos taurus]
gi|426240672|ref|XP_004014218.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 2 [Ovis
aries]
gi|296481542|tpg|DAA23657.1| TPA: small nuclear ribonucleoprotein polypeptide B'' [Bos taurus]
Length = 218
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/236 (52%), Positives = 159/236 (67%), Gaps = 28/236 (11%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTA---- 117
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAA---------PNNILFIQNLPHETTSSMLEM 175
T + + ANTQ A PN ILF+ NLP ET ML M
Sbjct: 118 ---------------TTVNKKPANTQGNATPNPQVPDYPPNYILFLNNLPEETNEMMLSM 162
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
LF Q+PGFKEVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 163 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 218
>gi|392883960|gb|AFM90812.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
Length = 226
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 123/234 (52%), Positives = 161/234 (68%), Gaps = 16/234 (6%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKK+ELKR+LY LFSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNINDKIKKDELKRALYSLFSQFGQIVDIVALKTMKMRGQAFVIFKELCS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVP------REKKKKQEEKAERKR 118
A++ +RQ+Q FPFY KPMRIQYAK+ SD +K G+F +++ K QE+ A K+
Sbjct: 62 ATSGLRQLQGFPFYGKPMRIQYAKTDSDVTSKMRGTFADKEKKKEKKRAKAQEQSAANKK 121
Query: 119 RAEEAQQSSMANGTGAQSNGGTAASFRNANTQ-ETAAPNNILFIQNLPHETTSSMLEMLF 177
A Q + AN SN T++ AN Q PN ILF+ NLP ET ML MLF
Sbjct: 122 MNLGAAQPTTAN-----SNQTTSS----ANQQVPDNPPNYILFLTNLPEETNEMMLSMLF 172
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
Q+PGFKEVR++ + IAFVEFE++ Q+ A ALQGF+ITP + M IT+AKK
Sbjct: 173 NQFPGFKEVRLVPGRHDIAFVEFENEGQAGAARDALQGFRITPSHAMKITYAKK 226
>gi|119630691|gb|EAX10286.1| small nuclear ribonucleoprotein polypeptide B'', isoform CRA_b
[Homo sapiens]
Length = 242
Score = 230 bits (586), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 119/226 (52%), Positives = 157/226 (69%), Gaps = 3/226 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAK 224
>gi|431894149|gb|ELK03949.1| U2 small nuclear ribonucleoprotein B'' [Pteropus alecto]
Length = 291
Score = 229 bits (585), Expect = 6e-58, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 158/227 (69%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 64 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 123
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A A
Sbjct: 124 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTAMTAN 183
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 184 KKP---GQGTPNSANTQGNVTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 240
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKIT + M IT+AKK
Sbjct: 241 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITLYHAMKITYAKK 287
>gi|355784710|gb|EHH65561.1| U2 small nuclear ribonucleoprotein B'' [Macaca fascicularis]
Length = 225
Score = 229 bits (584), Expect = 7e-58, Method: Compositional matrix adjust.
Identities = 119/227 (52%), Positives = 157/227 (69%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKAVEQTATTTN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGTPNSANTQGNTTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKIT + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITTSHAMKITYAKK 225
>gi|126303676|ref|XP_001374230.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like isoform 1
[Monodelphis domestica]
Length = 225
Score = 229 bits (584), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 121/236 (51%), Positives = 158/236 (66%), Gaps = 21/236 (8%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F A+++++ E+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDVISKMRGTF------------ADKEKKKEKKK 109
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAA---------PNNILFIQNLPHETTSSMLEM 175
S+ A + A+ +ANTQ + PN ILF+ NLP ET ML M
Sbjct: 110 AKSLEQTANAANKKPGQATPNSANTQGNSTQNPQVPDYPPNYILFLNNLPEETNEMMLSM 169
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
LF QYP FKEVR+ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 170 LFNQYPVFKEVRLGPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>gi|156402885|ref|XP_001639820.1| predicted protein [Nematostella vectensis]
gi|156226951|gb|EDO47757.1| predicted protein [Nematostella vectensis]
Length = 209
Score = 229 bits (583), Expect = 8e-58, Method: Compositional matrix adjust.
Identities = 132/225 (58%), Positives = 163/225 (72%), Gaps = 19/225 (8%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPNQTIYIKNLNEKIKKEELK+SLY +FSQ+G I D+VALKT K+RGQA+VVF ++ +A+
Sbjct: 4 PPNQTIYIKNLNEKIKKEELKKSLYAIFSQFGPILDIVALKTLKMRGQAFVVFKDIGSAT 63
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS 126
NA+R MQ FPFYDKPMRIQYAK KSD VAK +G+FVPREKK K++ KA A A
Sbjct: 64 NALRSMQGFPFYDKPMRIQYAKGKSDAVAKAEGTFVPREKKPKEKRKAPENAGAPIAAPM 123
Query: 127 SMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEV 186
++ TQ+ PNNILF+ NLP ETT ML MLF Q+PGFKEV
Sbjct: 124 AIP-------------------TQQPDLPNNILFLTNLPMETTELMLSMLFNQFPGFKEV 164
Query: 187 RMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
R++ + I+FVEFE++VQ+ A ALQGF+ITP N M+I++AKK
Sbjct: 165 RLVPGRSDISFVEFENEVQAGTAKDALQGFRITPTNAMSISYAKK 209
>gi|410917616|ref|XP_003972282.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Takifugu rubripes]
Length = 246
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 120/241 (49%), Positives = 155/241 (64%), Gaps = 31/241 (12%)
Query: 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61
+ DI PN TIYI N+N+K+KKEELKRSLY L SQ+G+I D+VA+KT K+RGQA+V+F E
Sbjct: 26 VIMDIRPNHTIYINNINDKVKKEELKRSLYALLSQFGQIVDIVAMKTMKMRGQAFVIFKE 85
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF-----------VPREKKKKQ 110
+TAA+NA+RQ+Q FPFY+KPMRIQYAK+ S+ +AK G++ P+E Q
Sbjct: 86 LTAATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKMKGTYGDKEKKKKEKKKPQELPANQ 145
Query: 111 EEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTS 170
+KA A +S + TG + PN ILF+ NLP ET
Sbjct: 146 TKKA-----AAVVSESHRSPPTGQVPDN---------------PPNYILFLTNLPEETNE 185
Query: 171 SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
ML MLF Q+PGFKEVR++ K I+FVEFE DVQ+ +A ALQGF+IT M IT+AK
Sbjct: 186 MMLSMLFNQFPGFKEVRLVPGKHDISFVEFESDVQAGVAKDALQGFRITATCAMKITYAK 245
Query: 231 K 231
K
Sbjct: 246 K 246
>gi|387914214|gb|AFK10716.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392878676|gb|AFM88170.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884228|gb|AFM90946.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884422|gb|AFM91043.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
gi|392884424|gb|AFM91044.1| u2 small nuclear ribonucleoprotein B-like protein [Callorhinchus
milii]
Length = 226
Score = 228 bits (580), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 122/229 (53%), Positives = 164/229 (71%), Gaps = 6/229 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKK+ELKR+LY LFSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNINDKIKKDELKRALYSLFSQFGQIVDIVALKTMKMRGQAFVIFKELCS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A++ +RQ+Q FPFY KPMRIQYAK+ SD +K G+F +EKKK++++ +++ A +
Sbjct: 62 ATSGLRQLQGFPFYGKPMRIQYAKTDSDVTSKMRGTFADKEKKKEKKKAKAQEQSAANKK 121
Query: 125 QS-SMANGTGAQSNGGTAASFRNANTQ-ETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
+ A T A SN T++ AN Q PN ILF+ NLP ET ML MLF Q+PG
Sbjct: 122 MNLGAAQPTTANSNQTTSS----ANQQVPDNPPNYILFLTNLPEETNEMMLSMLFNQFPG 177
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
FKEVR++ + IAFVEFE++ Q+ A ALQGF+ITP + M IT+AKK
Sbjct: 178 FKEVRLVPGRHDIAFVEFENEGQAGAARDALQGFRITPSHAMKITYAKK 226
>gi|395529330|ref|XP_003766769.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Sarcophilus
harrisii]
Length = 241
Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust.
Identities = 118/235 (50%), Positives = 153/235 (65%), Gaps = 12/235 (5%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F E+++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK------KKQEEKAERK---- 117
A+R MQ FPFYDKPMRIQYAKS SD +AK G++V R++K K QE A +K
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKSDSDIIAKMKGTYVERDRKREKRKPKGQETPAVKKAVPG 127
Query: 118 -RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
A G + E PN+ILF+ NLP ET ML ML
Sbjct: 128 GAAAPVVAAVQPVPGMPPMTQAPRIMHHLPGXLSEN-PPNHILFLTNLPEETNELMLSML 186
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQGFKIT N M I+FAKK
Sbjct: 187 FNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQGFKITQNNAMKISFAKK 241
>gi|324507603|gb|ADY43223.1| U2 small nuclear ribonucleoprotein B [Ascaris suum]
Length = 226
Score = 227 bits (578), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 113/230 (49%), Positives = 154/230 (66%), Gaps = 7/230 (3%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
DI PN TIYI NLNEK KK+ELK++LY +FSQ+G+I D++A KT K+RGQA V+F E++
Sbjct: 2 ADIRPNHTIYINNLNEKTKKDELKKALYAIFSQFGQIIDILAFKTLKMRGQAHVIFKEIS 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKA--ERKRRAE 121
+A+NA+R MQ FPFYDKPMRIQ+A+ SD +AK G++ R KK ++A E++++A
Sbjct: 62 SATNALRAMQGFPFYDKPMRIQFAREDSDVIAKAKGTYTDRPKKHLLAKQAAGEKRKKAG 121
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
+ S A A N AA+ ++T PN ILF NLP ETT ML +LF YP
Sbjct: 122 PPRDSKKARVEKAVPNKPAAAA-----VEKTNPPNKILFCTNLPEETTEQMLSLLFNPYP 176
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G K++R I +P IAFVEFE + ++++A AL FKITP M + +A K
Sbjct: 177 GLKDIRRIPNRPDIAFVEFESEGEATVARNALNNFKITPSQVMHVNYANK 226
>gi|47211375|emb|CAF89828.1| unnamed protein product [Tetraodon nigroviridis]
Length = 218
Score = 227 bits (578), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 161/227 (70%), Gaps = 10/227 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+K+KKEELKRSLY L SQ+G+I D+VA+KT K+RGQA+V+F E+TA
Sbjct: 2 DIRPNHTIYINNINDKVKKEELKRSLYALLSQFGQIVDIVAMKTMKMRGQAFVIFKELTA 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+RQ+Q FPFY+KPMRIQYAK+ S+ +AK G++ +EKKKK+++KA+ + A + +
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKMKGTYGDKEKKKKEKKKAQ-ELPANQMK 120
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
++++ S PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 121 KAAVVPAVPLHSPAAQVPD---------NPPNYILFLTNLPEETNEMMLSMLFNQFPGFK 171
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ K IAFVEFE D+Q+ +A ALQGF+IT M ITFAKK
Sbjct: 172 EVRLVPGKHDIAFVEFESDLQAGVAKDALQGFRITATCAMKITFAKK 218
>gi|432953883|ref|XP_004085463.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 1
[Oryzias latipes]
Length = 217
Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 158/227 (69%), Gaps = 11/227 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+K+KKEELKRSLY LFSQ+G+I VVALKT ++RGQA+VVF E+ A
Sbjct: 2 DIRPNYTIYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTMRMRGQAFVVFKELAA 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+RQ+Q FPFY+KPMRIQYAK+ S+ +AK G+F +E+K E+K++A+E
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKMKGTF------GDKEKKKEKKKKAQELA 115
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
++ A G T A N PN+ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 116 ANAAKKPAAAAVPGLTLALQVPDN-----PPNHILFLNNLPEETNEMMLSMLFNQFPGFK 170
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ K IAFVEFE D Q+ +A ALQGF+IT M ITFAKK
Sbjct: 171 EVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCAMKITFAKK 217
>gi|225713086|gb|ACO12389.1| U1 small nuclear ribonucleoprotein A [Lepeophtheirus salmonis]
Length = 217
Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 159/227 (70%), Gaps = 11/227 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D P+ TIYI NLNEK+KKE+LK+SLY +FSQ+G+I ++VALKT K+RGQA+V+F E+T+
Sbjct: 2 DARPSHTIYINNLNEKVKKEDLKKSLYAIFSQFGQILEIVALKTLKMRGQAFVIFKEITS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+R MQ FPFYDKPMRI ++K+ SD +AK G++ R KK + K +K+ A+EA
Sbjct: 62 ATNAMRSMQGFPFYDKPMRIAFSKTDSDVIAKIKGTYQERPKKAASDSKKAKKKAAKEAA 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ GA NA A PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 ARQICALAGA-----------NAVHPGEAPPNQILFLTNLPDETNEMMLSMLFNQFPGFK 170
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE++VQS+ A ++LQGFKITP M I+FAKK
Sbjct: 171 EVRLVPNRHDIAFVEFENEVQSAAARESLQGFKITPNASMKISFAKK 217
>gi|432953888|ref|XP_004085464.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like isoform 2
[Oryzias latipes]
Length = 218
Score = 226 bits (576), Expect = 6e-57, Method: Compositional matrix adjust.
Identities = 124/227 (54%), Positives = 162/227 (71%), Gaps = 10/227 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+K+KKEELKRSLY LFSQ+G+I VVALKT ++RGQA+VVF E+ A
Sbjct: 2 DIRPNYTIYINNINDKVKKEELKRSLYALFSQFGQILSVVALKTMRMRGQAFVVFKELAA 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+RQ+Q FPFY+KPMRIQYAK+ S+ +AK G+F +EKKK++++KA+ + A A+
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKTDSEVIAKMKGTFGDKEKKKEKKKKAQ-ELAANAAK 120
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ ++ G +R+ PN+ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 121 KPAVRRG------AVPPPLYRSVPDNP---PNHILFLNNLPEETNEMMLSMLFNQFPGFK 171
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ K IAFVEFE D Q+ +A ALQGF+IT M ITFAKK
Sbjct: 172 EVRLVPGKHDIAFVEFESDTQAGVAKDALQGFRITATCAMKITFAKK 218
>gi|391337372|ref|XP_003743043.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Metaseiulus occidentalis]
Length = 212
Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 126/227 (55%), Positives = 158/227 (69%), Gaps = 16/227 (7%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PN TIYI NLNEK+KKEELK+SL+ +FSQ+G I D+VALKT K+RGQA+V F E+ A
Sbjct: 2 DMRPNNTIYINNLNEKVKKEELKKSLFAIFSQFGPILDIVALKTLKMRGQAFVAFKEINA 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
AS A+R MQ FPF+DKPMRIQYAKS SD VAK G+FV E++KK EK + K++ + +
Sbjct: 62 ASEALRSMQGFPFFDKPMRIQYAKSDSDVVAKMKGTFV--ERQKKPIEKVQPKKKESKFR 119
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ +A G G A PN ILF+ LP ET ML+MLF Q+PGFK
Sbjct: 120 RFXVATGP-----SGPVAD---------QPPNAILFLTGLPEETNDMMLQMLFGQFPGFK 165
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR+I +P IAFVE+ED+ QS+ A LQGFK+TP P+ ITFAKK
Sbjct: 166 EVRLIPGRPDIAFVEYEDEAQSTAAKNGLQGFKVTPTAPIRITFAKK 212
>gi|449679798|ref|XP_002163097.2| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Hydra
magnipapillata]
Length = 219
Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 123/227 (54%), Positives = 161/227 (70%), Gaps = 9/227 (3%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DIPPNQTIYI NLNEK+KKEELK++LY +F+Q+G I DVVA+KT K+RGQA+VVF ++ +
Sbjct: 2 DIPPNQTIYINNLNEKVKKEELKKALYAIFTQFGSILDVVAMKTLKMRGQAFVVFKDIPS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+R MQ FPFYDKPMRI Y +SKSD VAK + +FVPR+KK K++ +K+ A++ +
Sbjct: 62 ATNALRSMQGFPFYDKPMRIAYCRSKSDAVAKLENTFVPRDKKLKRKVDETKKKPAKQLR 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
QS QS G + Q PN ILF+ LP ETT ML MLFQQ+ G+K
Sbjct: 122 QSV---PIIPQSMPG------HMQMQMPEIPNQILFLSELPDETTEIMLAMLFQQFDGYK 172
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+ ++ +A L GFKITP + M ITFA+K
Sbjct: 173 EVRLVPGRHDIAFVEFEEAEKARIAKDTLNGFKITPTHAMKITFARK 219
>gi|226443332|ref|NP_001139849.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
gi|221219334|gb|ACM08328.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
Length = 219
Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust.
Identities = 118/227 (51%), Positives = 164/227 (72%), Gaps = 9/227 (3%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKK+ELKRSLY LFSQ+G++ D+VA+KT K+RGQA+VVF E+ +
Sbjct: 2 DIRPNHTIYINNVNDKIKKDELKRSLYALFSQFGQVMDIVAMKTMKMRGQAFVVFKELAS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+RQ+Q FPFY+ PMRIQYAK+ S+ ++K G+F ++KKK +++KA+ + A A+
Sbjct: 62 ATNALRQLQGFPFYNNPMRIQYAKTDSEVISKIRGTFGDKDKKKDRKKKAQ-DQVANVAK 120
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ ++ G+ + +N T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 121 KPAL--GSASTNNAPTTMQVPD------NPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 172
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ K I+FVEFE + Q+ +A ALQGF+IT Q M IT+AKK
Sbjct: 173 EVRLVPGKHDISFVEFESEGQAGVAKDALQGFRITAQCAMKITYAKK 219
>gi|223649102|gb|ACN11309.1| U2 small nuclear ribonucleoprotein B [Salmo salar]
Length = 219
Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust.
Identities = 118/227 (51%), Positives = 164/227 (72%), Gaps = 9/227 (3%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKK+ELKRSLY LFSQ+G++ D+VA+KT K+RGQA+VVF E+ +
Sbjct: 2 DIRPNHTIYINNVNDKIKKDELKRSLYALFSQFGQVMDIVAMKTMKMRGQAFVVFKELAS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY+KPMRIQYAK+ S+ ++K G+F ++KKK +++KA+ + A A+
Sbjct: 62 STNALRQLQGFPFYNKPMRIQYAKTDSEVISKIRGTFGDKDKKKDRKKKAQ-DQVANVAK 120
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ ++ G+ +N T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 121 KPAL--GSANTNNAPTTMQVPD------NPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 172
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ K I+FVEFE + Q+ +A ALQGF+IT Q M IT+AKK
Sbjct: 173 EVRLVPGKHDISFVEFESEGQAGVAKDALQGFRITAQCAMKITYAKK 219
>gi|312372120|gb|EFR20150.1| hypothetical protein AND_20571 [Anopheles darlingi]
Length = 216
Score = 223 bits (567), Expect = 7e-56, Method: Compositional matrix adjust.
Identities = 125/233 (53%), Positives = 158/233 (67%), Gaps = 24/233 (10%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VA KT ++RGQA+++F E+ +
Sbjct: 2 DIRPNHTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVAYKTLRMRGQAFIIFKEIGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ------EEKAERKR 118
A+NA+R MQ FPFYDKPMRI Y+K+ SD +AK G+F R K+ +Q EEK +K+
Sbjct: 62 ATNAMRTMQGFPFYDKPMRINYSKTDSDMIAKLKGTFQERPKRVRQPKPVPTEEKKSKKQ 121
Query: 119 RAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQ 178
+A A GA +N TA PN ILF+ NLP ET ML MLF
Sbjct: 122 KA--------AGEVGATNNSATAEQ----------PPNQILFLTNLPEETNEMMLSMLFN 163
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
Q+PGFKEVR++ + IAFVEF +VQS A +ALQGFKITP + M I+FAKK
Sbjct: 164 QFPGFKEVRLVPNRHDIAFVEFASEVQSGAAREALQGFKITPTHAMKISFAKK 216
>gi|58331942|ref|NP_001011120.1| small nuclear ribonucleoprotein polypeptide B [Xenopus (Silurana)
tropicalis]
gi|54038268|gb|AAH84519.1| hypothetical LOC496533 [Xenopus (Silurana) tropicalis]
gi|89268683|emb|CAJ82680.1| small nuclear ribonucleoprotein polypeptide B [Xenopus (Silurana)
tropicalis]
Length = 223
Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 118/227 (51%), Positives = 159/227 (70%), Gaps = 5/227 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN T+YI NL +K+KK ELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+++
Sbjct: 2 DIRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+RQ+Q FPFY+KPMRIQYAKS SD + K G+F K+K++EK + K + + A
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKSDSDVILKMKGTFA---DKEKKKEKKKAKAQEQAAN 118
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
++ + +N AS +N + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 119 AANKKPALASNANNAPGAS-QNQQVPDN-PPNYILFLNNLPEETNEMMLSMLFNQFPGFK 176
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE++ ++ A ALQGFKITP + M IT+A K
Sbjct: 177 EVRLVPGRHDIAFVEFENETEAGAARDALQGFKITPSHAMKITYANK 223
>gi|324523388|gb|ADY48239.1| U2 small nuclear ribonucleoprotein B [Ascaris suum]
Length = 228
Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust.
Identities = 108/226 (47%), Positives = 151/226 (66%), Gaps = 1/226 (0%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
I PN TIYI NLNEK KKEEL+++LY +FS++G++ DV+A KT K+RGQA V+F E+++A
Sbjct: 4 IKPNHTIYINNLNEKTKKEELRKALYTIFSEFGQVIDVLAFKTLKMRGQAHVIFKEMSSA 63
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
SNA+R MQ FPFYDKPMRIQ+A+ SD +AK G++V R+KK + ++AE KR+ +
Sbjct: 64 SNALRAMQGFPFYDKPMRIQFAREDSDVIAKAKGTYVDRQKKYQLAKQAE-KRKKRGYPK 122
Query: 126 SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE 185
S T + + ++T PN ILF NLP+ETT ML +LF YPG K+
Sbjct: 123 DSKNGATPGHVENTVSDNAATVTVEKTNPPNKILFCTNLPNETTKQMLSILFSPYPGLKD 182
Query: 186 VRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+R + +P IAFVEFE + ++ +A AL FKITP + + +A K
Sbjct: 183 IRRVPDRPDIAFVEFESEGEAIVARTALNDFKITPSQAIRVDYANK 228
>gi|225707030|gb|ACO09361.1| U2 small nuclear ribonucleoprotein B [Osmerus mordax]
Length = 219
Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 121/232 (52%), Positives = 161/232 (69%), Gaps = 19/232 (8%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKK+ELKRSLY LFSQ+G+I D+VA+KT K+RGQA+VVF E+ A
Sbjct: 2 DIRPNHTIYINNVNDKIKKDELKRSLYALFSQFGQIVDIVAMKTIKMRGQAFVVFKELAA 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY+KPMRIQYAK+ S+ ++K G++ +EKKK++++KA
Sbjct: 62 STNALRQLQGFPFYNKPMRIQYAKTDSEVISKMRGTYSDKEKKKEKKKKA---------- 111
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETA-----APNNILFIQNLPHETTSSMLEMLFQQ 179
Q +AN T + G NTQ T PN ILF+ NLP ET ML MLF Q
Sbjct: 112 QEQVANVTKKPALGSNT----QPNTQVTTQVPDNPPNYILFLNNLPEETNEMMLSMLFNQ 167
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+PGFKEVR++ K I+FVEFE + ++ +A ALQGF+IT M IT++KK
Sbjct: 168 FPGFKEVRLVPGKHDISFVEFESEARAGVAKDALQGFRITATCAMKITYSKK 219
>gi|147902061|ref|NP_001088194.1| small nuclear ribonucleoprotein polypeptide B [Xenopus laevis]
gi|54035240|gb|AAH84107.1| LOC495019 protein [Xenopus laevis]
Length = 223
Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust.
Identities = 119/227 (52%), Positives = 158/227 (69%), Gaps = 5/227 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN T+YI NL +K+KK ELKRSLY LFSQ+G + D+VALKT K+RGQ +V+F E+++
Sbjct: 2 DIRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQGFVIFKELSS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+RQ+Q FPFY KPMRIQYAK+ SD V K G+F K+K++EK + K + + A
Sbjct: 62 ATNALRQLQGFPFYSKPMRIQYAKTDSDVVLKMKGTFA---DKEKKKEKKKAKAQEQAAN 118
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
++ +N +AS +N + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 119 AANKKPALAPNANNVPSAS-QNPQVPDN-PPNYILFLNNLPEETNEMMLSMLFNQFPGFK 176
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEF+++ ++ A ALQGFKITP N M ITFAKK
Sbjct: 177 EVRLVPGRHDIAFVEFDNETEAGSARDALQGFKITPSNAMKITFAKK 223
>gi|226372064|gb|ACO51657.1| U1 small nuclear ribonucleoprotein A [Rana catesbeiana]
Length = 279
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 123/272 (45%), Positives = 163/272 (59%), Gaps = 48/272 (17%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ + K+RGQA+V+F EV++A+N
Sbjct: 8 PNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA---- 123
A+R MQ FPFYDKPMRIQY+KS SD +AK G+FV R++++K++ K ++A
Sbjct: 68 ALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKGTFVERKRQEKRKGKVPEVPAVKKAIPGA 127
Query: 124 -------QQSSMAN-------------------------------GTGAQSNGGTAAS-- 143
Q MAN G G GG
Sbjct: 128 PVQGMPGQIPGMANIPGMTQAPRMMHMPGQTPYMHHPGMMPPPGIGPGQIPPGGMPHGQM 187
Query: 144 --FRNANTQETA--APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVE 199
+ A Q + PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVE
Sbjct: 188 MPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVE 247
Query: 200 FEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
FE++VQ+ A ++LQGFKIT N M I+FAKK
Sbjct: 248 FENEVQAGAARESLQGFKITQSNSMKISFAKK 279
>gi|147902216|ref|NP_001085460.1| MGC80122 protein [Xenopus laevis]
gi|49257361|gb|AAH72799.1| MGC80122 protein [Xenopus laevis]
Length = 223
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 161/227 (70%), Gaps = 5/227 (2%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN T+YI NL +K+KK ELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+++
Sbjct: 2 DIRPNHTVYINNLCDKVKKPELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELSS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+RQ+Q FPFY KPMRIQYAKS SD V K G+F +EKKK++++ +++ A A
Sbjct: 62 ATNALRQLQGFPFYSKPMRIQYAKSDSDVVLKMKGTFADKEKKKEKKKAKAQEQAANAAN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ S A + A+ +N Q+ PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKSAP----ASNANNAPAASQNTQVQDN-PPNYILFLNNLPEETNEMMLSMLFNQFPGFK 176
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE++ ++ A ALQGFKITP + M IT+AKK
Sbjct: 177 EVRLVPGRHDIAFVEFENETEAGSARDALQGFKITPSHAMKITYAKK 223
>gi|47028317|gb|AAT09091.1| small nuclear ribonucleoprotein [Bigelowiella natans]
Length = 227
Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 108/226 (47%), Positives = 152/226 (67%), Gaps = 5/226 (2%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+ PNQTIYI+NLNEK+K++EL+ +LY FSQ+G I +V A K RGQAW+VF +++ A
Sbjct: 7 VRPNQTIYIQNLNEKLKRDELRINLYHAFSQFGNILEVFASKKGNKRGQAWIVFDDLSGA 66
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
+ +VR MQN F+ K MR+ YAK KSD ++K DGS+VPREK+K + + + ++
Sbjct: 67 TKSVRGMQNVDFFGKKMRLSYAKEKSDIISKRDGSYVPREKRKMNSGDMKIEPKVQKTTA 126
Query: 126 SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE 185
+ A G GA A ++++ PN ILF +NLP + T MLE LF+QY GFKE
Sbjct: 127 VATAKGEGA-----PAMETDEPEEEDSSPPNKILFARNLPPQATKKMLETLFKQYDGFKE 181
Query: 186 VRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
VR+++ KP IAF+EF D +S++A + LQ FKIT QN M +TFAK+
Sbjct: 182 VRLVDGKPDIAFIEFNDAQESALAKEGLQNFKITSQNAMKLTFAKQ 227
>gi|357621621|gb|EHJ73396.1| U1 small nuclear ribonucleoprotein A [Danaus plexippus]
Length = 220
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 160/227 (70%), Gaps = 8/227 (3%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLNEKIKKEELK+SLY +FSQ+G+I ++VALKT K+RGQA+V+F E+++
Sbjct: 2 DIRPNHTIYINNLNEKIKKEELKKSLYAIFSQFGQILEIVALKTLKMRGQAFVIFKEISS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+ A+R MQ FPFYDKPMRIQY K+ SD +AK G+F R K+ K + ++ K++ +
Sbjct: 62 ATVALRSMQGFPFYDKPMRIQYCKTDSDVIAKMKGTFQERPKRPKLPKGSDEKKKKNKDP 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
G G S N N ++ PN ILF+ NLP ET+ ML MLF Q+PGFK
Sbjct: 122 NRPNVPGFGQPS------VLNNVNAEQ--PPNQILFLTNLPDETSEMMLSMLFNQFPGFK 173
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEF +++QS+ A +ALQGFKITP + M I+FAKK
Sbjct: 174 EVRLVPNRHDIAFVEFANEMQSAAAKEALQGFKITPTHAMKISFAKK 220
>gi|195134172|ref|XP_002011511.1| snf [Drosophila mojavensis]
gi|193906634|gb|EDW05501.1| snf [Drosophila mojavensis]
Length = 216
Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 128/229 (55%), Positives = 160/229 (69%), Gaps = 16/229 (6%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PNQTIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE--RKRRAEE 122
ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R KK K + +++ ++
Sbjct: 62 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGVEEKKDKK 121
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
+QSS N N NTQ PN ILF+ NLP ET ML MLF Q+PG
Sbjct: 122 KKQSSAENA--------------NPNTQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPG 167
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
FKEVR++ + IAFVEF ++QS+ A +ALQGFKITP + M ITFAKK
Sbjct: 168 FKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|194763787|ref|XP_001964014.1| GF21334 [Drosophila ananassae]
gi|190618939|gb|EDV34463.1| GF21334 [Drosophila ananassae]
Length = 216
Score = 221 bits (562), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 127/227 (55%), Positives = 158/227 (69%), Gaps = 12/227 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PNQTIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+VVF E+ +
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVVFKEIGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G+F ER ++ + +
Sbjct: 62 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKIKGTF------------KERPKKIKPPK 109
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ A+ + T+A N NTQ PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 110 PAPGADEKKDKKKKPTSAENSNPNTQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFK 169
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEF ++QS+ A +ALQGFKITP + M ITFAKK
Sbjct: 170 EVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|170070159|ref|XP_001869484.1| U1 small nuclear ribonucleoprotein A [Culex quinquefasciatus]
gi|167866053|gb|EDS29436.1| U1 small nuclear ribonucleoprotein A [Culex quinquefasciatus]
Length = 216
Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 122/227 (53%), Positives = 160/227 (70%), Gaps = 12/227 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN T+YI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+++F E+ +
Sbjct: 2 DIRPNHTVYINNLNEKIKKEELKKSLYAIFSQFGQIMDIVALKTLKMRGQAFIIFKEIGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+R MQ FPFYDKPMRI Y+KS SD +AK G+F +E+ ++ R + A
Sbjct: 62 ATNAMRTMQGFPFYDKPMRINYSKSDSDVIAKLKGTF---------KERPKKARVPKPAH 112
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
Q + ++ G+AA+ N+ T E PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 113 QEEKKSKKQKNADSGSAAN--NSATAEQ-PPNQILFLTNLPEETNEMMLSMLFNQFPGFK 169
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEF ++QS A +ALQGFKITP + M I+FAKK
Sbjct: 170 EVRLVPNRHDIAFVEFATELQSGAAREALQGFKITPTHAMKISFAKK 216
>gi|195396809|ref|XP_002057021.1| GJ16850 [Drosophila virilis]
gi|194146788|gb|EDW62507.1| GJ16850 [Drosophila virilis]
Length = 216
Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 158/227 (69%), Gaps = 12/227 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PNQTIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ +++ K+ + + AEE +
Sbjct: 62 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY---KERPKKVKPPKPAPGAEEKK 118
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ S N NTQ PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 119 DKKKKQSSTENS---------NPNTQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFK 169
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEF ++QS+ A +ALQGFKITP + M ITFAKK
Sbjct: 170 EVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|194888638|ref|XP_001976948.1| GG18748 [Drosophila erecta]
gi|190648597|gb|EDV45875.1| GG18748 [Drosophila erecta]
Length = 216
Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 159/227 (70%), Gaps = 12/227 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PNQTIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
ASNA+R MQ FPFYDKPM+I Y+KS SD VAK +G+F +++ K+ + + AEE +
Sbjct: 62 ASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKLNGTF---KERPKKIKPPKPAPGAEEKK 118
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ S N NTQ PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 119 DKKKKPSSAENS---------NPNTQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFK 169
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEF ++QS+ A +ALQGFKITP + M ITFAKK
Sbjct: 170 EVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|321460285|gb|EFX71329.1| sans fille-like protein [Daphnia pulex]
Length = 227
Score = 220 bits (560), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 130/228 (57%), Positives = 166/228 (72%), Gaps = 3/228 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PN TIYI NLNEK+KKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F EVT+
Sbjct: 2 DVRPNSTIYINNLNEKVKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEVTS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+R MQ FPFYDKPMRIQYAK+ SD +AK G+F R K K E + ++K++ E Q
Sbjct: 62 ATNALRGMQGFPFYDKPMRIQYAKTDSDVIAKMKGTFQERPAKPKPEGEPKKKKKKESKQ 121
Query: 125 QSSMANGT-GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
Q + G+ G + G A A E PN ILF+ NLP ET ML MLF Q+PGF
Sbjct: 122 QQVVTPGSFGGPATYGYPA-IGGAGVPE-QPPNQILFLTNLPEETNEMMLSMLFTQFPGF 179
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
KEVR++ + IAFVEFE++VQS+ A ++LQGFKITP + M I+FAKK
Sbjct: 180 KEVRLVPGRHDIAFVEFENEVQSAGARESLQGFKITPTHSMKISFAKK 227
>gi|91078752|ref|XP_968271.1| PREDICTED: similar to U1 small nuclear ribonucleoprotein A
[Tribolium castaneum]
gi|270003743|gb|EFA00191.1| hypothetical protein TcasGA2_TC003016 [Tribolium castaneum]
Length = 214
Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 124/227 (54%), Positives = 157/227 (69%), Gaps = 14/227 (6%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNNTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIQS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+R MQ FPFYDKPMRIQYAK+ SD ++K G+F R KK + E +EA
Sbjct: 62 STNALRSMQGFPFYDKPMRIQYAKTDSDVISKMKGTFQERPKKIRPPPSKE-----DEAP 116
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ N + GG+ A PN ILF+ NLP ET+ ML MLF Q+PGFK
Sbjct: 117 KKKKKNKDPNRIPGGSNAE---------QPPNQILFLTNLPDETSEMMLSMLFNQFPGFK 167
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+++QS A ALQGFKITP + M I+FAKK
Sbjct: 168 EVRLVPNRHDIAFVEFENELQSGAAKDALQGFKITPTHAMKISFAKK 214
>gi|195476907|ref|XP_002100029.1| GE16390 [Drosophila yakuba]
gi|194187553|gb|EDX01137.1| GE16390 [Drosophila yakuba]
Length = 216
Score = 219 bits (558), Expect = 8e-55, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 158/227 (69%), Gaps = 12/227 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PNQTIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
ASNA+R MQ FPFYDKPM+I Y+KS SD VAK G+F +++ K+ + + AEE +
Sbjct: 62 ASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKLKGTF---KERPKKIKPPKPAPGAEEKK 118
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ S N NTQ PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 119 DKKKKPSSAENS---------NPNTQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFK 169
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEF ++QS+ A +ALQGFKITP + M ITFAKK
Sbjct: 170 EVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|37748043|gb|AAH59527.1| Snrpb2 protein [Danio rerio]
Length = 229
Score = 219 bits (557), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 119/231 (51%), Positives = 158/231 (68%), Gaps = 8/231 (3%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
++ DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G+I D+VALKT ++RGQA+V+F
Sbjct: 7 LLIMDIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFK 66
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
E++AA+NA+RQ+Q FPFY+KPMRIQYAK+ SD V+K G++ +K+KK+E+K + + +A
Sbjct: 67 ELSAATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTY--GDKEKKKEKKKKAQEQA 124
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
A Q + PN ILF+ NLP ET ML MLF Q+
Sbjct: 125 AANANKKPAGAVNTQPPPPATVQIPD------NPPNYILFLNNLPEETNEMMLSMLFNQF 178
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PGFKEVR++ K I+FVEFE + Q+ +A ALQGF+IT M IT+AKK
Sbjct: 179 PGFKEVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 229
>gi|371874989|ref|NP_001243119.1| U2 small nuclear ribonucleoprotein B'' [Danio rerio]
Length = 220
Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust.
Identities = 119/227 (52%), Positives = 156/227 (68%), Gaps = 8/227 (3%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G+I D+VALKT ++RGQA+V+F E++A
Sbjct: 2 DIRPNHTIYINNVNDKIKKEELKRSLYALFSQFGQIMDIVALKTMRMRGQAFVIFKELSA 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+RQ+Q FPFY+KPMRIQYAK+ SD V+K G++ +K+KK+E+K + + +A
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKTDSDLVSKMRGTY--GDKEKKKEKKKKAQEQAAANA 119
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
A Q + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 120 NKKPAGAVNTQPPPPATVQIPD------NPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 173
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ K I+FVEFE + Q+ +A ALQGF+IT M IT+AKK
Sbjct: 174 EVRLVPGKHDISFVEFESEAQAGVAKDALQGFRITATCAMKITYAKK 220
>gi|195448090|ref|XP_002071505.1| GK25839 [Drosophila willistoni]
gi|194167590|gb|EDW82491.1| GK25839 [Drosophila willistoni]
Length = 216
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 127/230 (55%), Positives = 159/230 (69%), Gaps = 18/230 (7%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PNQTIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G+F K R ++ +
Sbjct: 62 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTF---------------KERPKKVK 106
Query: 125 QSSMANGTGAQSNGGTA-ASFRNA--NTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
+ + GT + + AS NA +TQ PN ILF+ NLP ET ML MLF Q+P
Sbjct: 107 VTKVVPGTDDKKDKRKKPASTENAAPSTQTEQPPNQILFLTNLPEETNEMMLSMLFNQFP 166
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
GFKEVR++ + IAFVEF ++QS+ A +ALQGFKITP + M ITFAKK
Sbjct: 167 GFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|340368063|ref|XP_003382572.1| PREDICTED: hypothetical protein LOC100640859 [Amphimedon
queenslandica]
Length = 790
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 123/225 (54%), Positives = 168/225 (74%), Gaps = 11/225 (4%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPN TIYI NLNEK+KKEELK+SLY +FSQ+G I D+VALKT K+RGQA+VVF ++ +A+
Sbjct: 577 PPNNTIYINNLNEKVKKEELKKSLYAIFSQFGDILDIVALKTLKMRGQAFVVFRDIGSAT 636
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS 126
NA+R MQ FPFYDKPMRI YAK+KSD +AK DGS+V EKKKK+ E+A R ++A+QS
Sbjct: 637 NALRSMQGFPFYDKPMRIAYAKTKSDAIAKVDGSYV--EKKKKKSEEA----RPKKAKQS 690
Query: 127 SMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEV 186
+ A + + ++ + ++ PN ILFI NLP ETT ML+MLF+Q+PG +E+
Sbjct: 691 A-----SAGGSNASGSTGGGGGNKGSSIPNKILFISNLPPETTEVMLKMLFEQFPGLQEI 745
Query: 187 RMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
R++ ++ IAFVE+E++ Q++ AM +LQ FKI P +PM IT+A K
Sbjct: 746 RLVPSRTDIAFVEYENESQATEAMSSLQDFKIVPTHPMKITYANK 790
>gi|410909846|ref|XP_003968401.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1
[Takifugu rubripes]
Length = 273
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 121/273 (44%), Positives = 162/273 (59%), Gaps = 42/273 (15%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M T ++ N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ +T K++GQA+V+F
Sbjct: 1 MTTPEVRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTMKMKGQAFVIFK 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQE-----EKAE 115
EV +ASNA+R MQ FPFYDKPMRIQYAK SD +AK G++V R++KK+++ + +
Sbjct: 61 EVNSASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKVKAPDSSG 120
Query: 116 RKRRAEEAQQSSMANGTGA-------------------------------------QSNG 138
K+ A+ A S +A G Q
Sbjct: 121 SKKNAQGAAASMVAGVPGGMAGMPPMSQAPRMMHMPGQPPYMPPPGMMPPPGMAPGQMPP 180
Query: 139 GTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFV 198
G + PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFV
Sbjct: 181 GAMMPGQMPQQVSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFV 240
Query: 199 EFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EF+++VQ+ A ALQGFKIT N M I+FAKK
Sbjct: 241 EFDNEVQAGAARDALQGFKITQSNAMKISFAKK 273
>gi|351712152|gb|EHB15071.1| U1 small nuclear ribonucleoprotein A [Heterocephalus glaber]
Length = 272
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 116/246 (47%), Positives = 159/246 (64%), Gaps = 30/246 (12%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN T+ I NLNEKIK++ELK+SLY +FSQ+G I D++ ++ K+RGQA V+F EV++A+N
Sbjct: 8 PNHTVSINNLNEKIKEDELKKSLYAIFSQFGHILDILVSRSLKMRGQALVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+++ RK +++EA +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKANSDIIAKLKGTFVERDRKREK-----RKPKSQEAPSAK 122
Query: 128 MANGTGAQSNGGTAASFRN----------------------ANTQETAAPNNILFIQNLP 165
A GA + AAS+ + A PN+ILF+ NLP
Sbjct: 123 KAVQGGAAAP--VAASWHDPPPGLAPGQMPPQQIMPGQMPPAQPLSENPPNHILFLTNLP 180
Query: 166 HETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225
ET ML M F Q+PGF+E R++ + IAFVEF D+VQ+ A +ALQG+KIT N M
Sbjct: 181 EETNELMLSMPFNQFPGFQEARLVPGRHDIAFVEF-DEVQAGAAREALQGYKITQNNAMK 239
Query: 226 ITFAKK 231
I+FAKK
Sbjct: 240 ISFAKK 245
>gi|195046460|ref|XP_001992159.1| GH24608 [Drosophila grimshawi]
gi|193893000|gb|EDV91866.1| GH24608 [Drosophila grimshawi]
Length = 216
Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 126/227 (55%), Positives = 158/227 (69%), Gaps = 12/227 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PNQTIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ +++ K+ + + EE +
Sbjct: 62 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY---KERPKKVKPPKPAPGVEEKK 118
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
SN A N NTQ PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 119 DKKK-----KPSNAENA----NPNTQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFK 169
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEF ++QS+ A +ALQGFKITP + M ITFAKK
Sbjct: 170 EVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|62857647|ref|NP_001016784.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
gi|60618430|gb|AAH90598.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
gi|89273875|emb|CAJ82017.1| small nuclear ribonucleoprotein polypeptide A [Xenopus (Silurana)
tropicalis]
Length = 282
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/282 (42%), Positives = 164/282 (58%), Gaps = 51/282 (18%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M ++ PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F
Sbjct: 1 MAVQEVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFK 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK-------KKQEEK 113
E+++A+NA+R MQ FPFYDKPMRIQY+KS SD +AK G++V R++K K QE
Sbjct: 61 EISSATNALRSMQGFPFYDKPMRIQYSKSDSDIIAKMKGTYVERDRKRQEKRKVKGQEAP 120
Query: 114 AERK----------------------------RRAEEAQQSSMANGTGAQSNGGTAAS-- 143
+K R A Q+ + G G A
Sbjct: 121 GVKKALPGAALLPGVPGQMAGMQNIPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQI 180
Query: 144 ------------FRNANTQETA--APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI 189
+ A Q + PN+ILF+ NLP ET ML MLF Q+PGFKEVR++
Sbjct: 181 PPGGMPHGHLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240
Query: 190 EAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+ IAFVEF+++VQ+ A ++LQGFKIT N M I+FAKK
Sbjct: 241 PGRHDIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>gi|307102554|gb|EFN50825.1| hypothetical protein CHLNCDRAFT_28661 [Chlorella variabilis]
Length = 219
Score = 217 bits (553), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 112/226 (49%), Positives = 154/226 (68%), Gaps = 8/226 (3%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D PNQT+Y+ NL EKIKK ELK+ LY LF Q+G+I D+VA++T KLRGQAW+V++++TA
Sbjct: 2 DTAPNQTLYVSNLQEKIKKRELKQLLYALFGQFGKIVDIVAMRTDKLRGQAWIVYADITA 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+ A+R MQ+FPF+DKP+R+ +AKS S VA + G + K + KA A
Sbjct: 62 ATAALRGMQDFPFFDKPLRVSFAKSASHAVAPKKGG----KGAKGKPPKAPAAVAAGGDA 117
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ A + GG + A + PN LF++NLP TT++MLEMLFQQ+PG K
Sbjct: 118 AAKAKQPADAAAAGGR----QKAAAVDVGEPNAKLFVENLPAATTAAMLEMLFQQFPGCK 173
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
EV + AKPGIAF+EFE ++Q+++AM LQGFK+TPQN M IT++K
Sbjct: 174 EVTTVPAKPGIAFIEFETEMQATVAMTGLQGFKVTPQNSMTITYSK 219
>gi|318065773|ref|NP_001187499.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus punctatus]
gi|308322301|gb|ADO28288.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus furcatus]
gi|308323171|gb|ADO28722.1| u2 small nuclear ribonucleoprotein b'' [Ictalurus punctatus]
Length = 219
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 119/228 (52%), Positives = 151/228 (66%), Gaps = 11/228 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLN+++KKEELKRSLY LFSQ+G+I ++VA+KT K+RGQA+VVF E+ A
Sbjct: 2 DIRPNHTIYINNLNDRVKKEELKRSLYALFSQFGQIVEIVAMKTMKMRGQAFVVFKELAA 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+RQ+Q FPFY+KPMRIQYAK+ SD V+K G++ E+K+ ++
Sbjct: 62 ATNALRQLQGFPFYNKPMRIQYAKTDSDIVSKMRGTY----------GDKEKKKEKKKKA 111
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQ-ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
Q AN N A Q PN ILF+ NLP ET ML MLF Q+PGF
Sbjct: 112 QEQAANAAKKPVNAVNNQPPPPATVQVPDNPPNYILFLTNLPEETNEMMLSMLFNQFPGF 171
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
KEVR++ K IAFVEFE + Q+ +A ALQGF+IT M IT+AKK
Sbjct: 172 KEVRLVPGKHDIAFVEFEGEAQAGVAKDALQGFRITATCAMKITYAKK 219
>gi|452823467|gb|EME30477.1| U2 small nuclear ribonucleoprotein B'' [Galdieria sulphuraria]
Length = 250
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 105/228 (46%), Positives = 160/228 (70%), Gaps = 13/228 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+PPNQTIYI+NL+EK+KK+EL++SLY FSQ+GRI DVVALKT ++RGQA++ F ++ +
Sbjct: 35 DVPPNQTIYIRNLDEKVKKQELRQSLYEAFSQFGRIVDVVALKTTRMRGQAFIAFEDIAS 94
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPR-EKKKKQEEKAERKRRAEEA 123
A+NA+R +Q F FY+KPM IQYAK+KS+ VAK DG+FV R E+K Q+ E K + +
Sbjct: 95 ATNALRGLQGFLFYNKPMVIQYAKAKSEKVAKLDGTFVRRSERKPDQDASVEPKSDSLKR 154
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
+++S T ++ +T + PN++LFI +P + + LE LF Q+PG+
Sbjct: 155 KRTS------------TPVLSKDLDTLQVGEPNHVLFIAGIPQDCSLQQLESLFVQFPGY 202
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
KE R+ + +AFVEFE + Q+++A+Q +QGF+I+ + ++I +AKK
Sbjct: 203 KETRLAAGQERVAFVEFETEDQATVALQGMQGFRISETSQLSIVYAKK 250
>gi|428182625|gb|EKX51485.1| hypothetical protein GUITHDRAFT_159319 [Guillardia theta CCMP2712]
Length = 237
Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 113/229 (49%), Positives = 151/229 (65%), Gaps = 10/229 (4%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
G PNQT+YI NLN+KI K+ L+ LY L SQ+G + DVVALKT K+RGQA+VVF ++T
Sbjct: 17 GITLPNQTLYINNLNDKISKQVLRSELYVLCSQFGGVLDVVALKTGKMRGQAFVVFQQLT 76
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA 123
AAS A++++Q F FY KPMR + ++KSD +AKEDG+FVP++K+K + K+ ++
Sbjct: 77 AASVALQKLQGFEFYGKPMRTAFCRTKSDVIAKEDGTFVPKQKRKTESHVPAYKQPNKKQ 136
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAAP-NNILFIQNLPHETTSSMLEMLFQQYPG 182
S A AQ G +ET P N ILF++ LP E ML+ LF+Q+PG
Sbjct: 137 MVESQAE---AQPEGDQDMQ------EETNQPINKILFLERLPDEINVEMLQTLFKQFPG 187
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVRM+ K GIAFVEFE D Q++ A LQGFK+TP N + IT+AKK
Sbjct: 188 LAEVRMVPGKTGIAFVEFESDAQAATARDTLQGFKLTPTNTLRITYAKK 236
>gi|328869164|gb|EGG17542.1| U2 small nuclear ribonucleoprotein B [Dictyostelium fasciculatum]
Length = 241
Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust.
Identities = 97/227 (42%), Positives = 156/227 (68%), Gaps = 7/227 (3%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
T DI PNQTIY+ N+NEK+ +++LK LY LFS+YG I ++++ K K++GQA++VF ++
Sbjct: 20 TTDILPNQTIYVNNINEKLSQKKLKEQLYGLFSKYGTILEIISSKRQKMKGQAFIVFQDI 79
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
TAASNA+R+M F F+D+ + +QY+K+KSD V+K DG++V ++++++ E++ + ++ +
Sbjct: 80 TAASNALREMNGFSFFDRNINVQYSKNKSDAVSKLDGTYVEKKRERETEQEKRKAKKQDN 139
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
+ + + T + G A A PN ILF++NLP M++MLF Q+PG
Sbjct: 140 KKSTKQSKTTSTSTPSGNVAP-------REAPPNRILFVENLPDNCQEMMIQMLFSQFPG 192
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
F+ V M A+ G+AFVE++DD++S +AM LQGFK+T PM I+FA
Sbjct: 193 FQSVNMTTARKGVAFVEYDDDIKSGLAMSHLQGFKVTSDRPMVISFA 239
>gi|307110924|gb|EFN59159.1| hypothetical protein CHLNCDRAFT_50008 [Chlorella variabilis]
Length = 236
Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 106/223 (47%), Positives = 152/223 (68%), Gaps = 8/223 (3%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
T+Y+ NL EK+ +++LK++++C+F Q+G+I DVV+ +T +LRGQAWVVF + A NA
Sbjct: 21 GHTVYVNNLPEKVSQDDLKKAMHCIFGQFGKILDVVSRRTYRLRGQAWVVFEKAEDAKNA 80
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSM 128
+ MQ FPF DKP+RI AK+KSD ++K+DG+F R K ++Q + K AE QQ +
Sbjct: 81 LDCMQGFPFLDKPLRIALAKTKSDAISKQDGTFRERPKVERQ---VKSKAAAEALQQRAK 137
Query: 129 ANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM 188
A+ + AA+ A + PN+ILF++NLP +M+ MLFQQ+ GFKEVRM
Sbjct: 138 -----AKPDAAAAAAAAAAAAGQPRGPNHILFVENLPGTANEAMVGMLFQQFTGFKEVRM 192
Query: 189 IEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+ AKPGIAFVE+ D+ Q+ +AMQ LQGFK+ PMAI+FA +
Sbjct: 193 VPAKPGIAFVEYSDEGQAGVAMQGLQGFKLATDKPMAISFANR 235
>gi|157103841|ref|XP_001648152.1| U1 small nuclear ribonucleoprotein A [Aedes aegypti]
gi|157133359|ref|XP_001656219.1| U1 small nuclear ribonucleoprotein A [Aedes aegypti]
gi|108869334|gb|EAT33559.1| AAEL014167-PA [Aedes aegypti]
gi|108881556|gb|EAT45781.1| AAEL002980-PA [Aedes aegypti]
Length = 216
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 123/233 (52%), Positives = 158/233 (67%), Gaps = 24/233 (10%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI P+ TIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+++F E+ +
Sbjct: 2 DIRPSHTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFIIFKEIAS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK------QEEKAERKR 118
A+NA+R MQ FPFYDKPMRI Y+K+ SD +AK G+F R KK K QE+K +K+
Sbjct: 62 ATNAMRTMQGFPFYDKPMRINYSKTDSDVIAKMKGTFKERPKKAKAPKPIHQEDKKSKKQ 121
Query: 119 RAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQ 178
+ EA ++ + T Q PN ILF+ NLP ET ML MLF
Sbjct: 122 KNAEAGAAANNSATAEQP------------------PNQILFLTNLPEETNEMMLSMLFN 163
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
Q+PGFKEVR++ + IAFVEF ++QS A +ALQGFKITP + M I+FAKK
Sbjct: 164 QFPGFKEVRLVPNRHDIAFVEFATELQSGAAREALQGFKITPTHAMKISFAKK 216
>gi|66806007|ref|XP_636725.1| U2 small nuclear ribonucleoprotein B [Dictyostelium discoideum AX4]
gi|74996697|sp|Q54J05.1|RU2B_DICDI RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|60465122|gb|EAL63221.1| U2 small nuclear ribonucleoprotein B [Dictyostelium discoideum AX4]
Length = 241
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 157/237 (66%), Gaps = 12/237 (5%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
+ DIPPNQT+Y+ NL EKI K++L L LFS+YG I ++V K+ K+RGQA++VF ++
Sbjct: 5 SADIPPNQTLYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQAFIVFKDI 64
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
T+ASNA+R+M F F D+PM+IQY KSKSD V+K DG+++ EKK+++EE ++ ++
Sbjct: 65 TSASNALREMNGFNFLDRPMKIQYCKSKSDAVSKLDGTYM--EKKREREENDKKGSNKKQ 122
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAA----------PNNILFIQNLPHETTSSM 172
++S+ + G ++ + + PN LF++NLP + S M
Sbjct: 123 DRKSTGQQQQQQKRPGAPTSTTSTTSPTTSNGTVSLQPRDDPPNKTLFVENLPDKCDSMM 182
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
L MLF Q+ GFKEV M+E+K GIAF+EFED+++S AM LQ FK+TP+ PM ++FA
Sbjct: 183 LSMLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMTNLQHFKVTPEKPMVVSFA 239
>gi|125983292|ref|XP_001355411.1| GA18235 [Drosophila pseudoobscura pseudoobscura]
gi|195162057|ref|XP_002021872.1| GL14287 [Drosophila persimilis]
gi|54643726|gb|EAL32469.1| GA18235 [Drosophila pseudoobscura pseudoobscura]
gi|194103770|gb|EDW25813.1| GL14287 [Drosophila persimilis]
Length = 216
Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 125/227 (55%), Positives = 154/227 (67%), Gaps = 12/227 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PNQTIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+VVF E+ +
Sbjct: 2 DVRPNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVVFKEIGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
ASNA+R MQ FPFYDKPMRI Y+K SD VAK G+F R KK K + ++ +
Sbjct: 62 ASNALRTMQGFPFYDKPMRIAYSKCDSDIVAKLKGTFKERPKKVKPPKPTPGIDDKKDKK 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ + N NTQ PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKPVTTENS------------NPNTQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFK 169
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEF ++QS+ A +ALQGFKITP + M ITFAKK
Sbjct: 170 EVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|346464627|gb|AEO32158.1| hypothetical protein [Amblyomma maculatum]
Length = 199
Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust.
Identities = 104/185 (56%), Positives = 133/185 (71%), Gaps = 8/185 (4%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN T+YI NLNEKI ELK+SL +FSQYG I +V+A KT K +GQAWVVF +V+ A
Sbjct: 13 VPPNMTLYINNLNEKINLNELKKSLRAVFSQYGNILEVLAFKTLKHKGQAWVVFEDVSKA 72
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAE--EA 123
S A++QMQ FPFYDKPMRIQYAK+KSD +AK DG+FVPRE++K+ ++KAERKRR + +A
Sbjct: 73 SEALKQMQGFPFYDKPMRIQYAKTKSDIIAKSDGTFVPRERRKRHDDKAERKRREQHHDA 132
Query: 124 QQSSMANGTGAQSNGGTAASF------RNANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
Q + N GA + ++ + A PNNILF+QNLPHE+T ML+MLF
Sbjct: 133 QSGAGLNYAGAYGVAPPLSQLPFTGXAKSMLPEAPAPPNNILFVQNLPHESTPMMLQMLF 192
Query: 178 QQYPG 182
QYPG
Sbjct: 193 CQYPG 197
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 31/96 (32%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 142 ASFRNANTQETAAPNNILFIQNLPHETT----SSMLEMLFQQYPGFKEV---RMIEAKPG 194
+S T PN L+I NL + L +F QY EV + ++ K G
Sbjct: 2 SSVTTGGDAPTVPPNMTLYINNLNEKINLNELKKSLRAVFSQYGNILEVLAFKTLKHK-G 60
Query: 195 IAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
A+V FED ++S A++ +QGF PM I +AK
Sbjct: 61 QAWVVFEDVSKASEALKQMQGFPFY-DKPMRIQYAK 95
>gi|195340669|ref|XP_002036935.1| GM12396 [Drosophila sechellia]
gi|194131051|gb|EDW53094.1| GM12396 [Drosophila sechellia]
Length = 216
Score = 213 bits (543), Expect = 4e-53, Method: Compositional matrix adjust.
Identities = 122/224 (54%), Positives = 155/224 (69%), Gaps = 12/224 (5%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQTIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +ASN
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASN 64
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPM+I Y+KS SD VAK G+F +++ K+ + + +E +
Sbjct: 65 ALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTF---KERPKKIKPPKPAPGTDEKKDKK 121
Query: 128 MANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVR 187
+ S N NTQ PN ILF+ NLP ET ML MLF Q+PGFKEVR
Sbjct: 122 KKPSSAENS---------NPNTQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVR 172
Query: 188 MIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
++ + IAFVEF ++QS+ A +ALQGFKITP + M ITFAKK
Sbjct: 173 LVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|148222234|ref|NP_001080089.1| U1 small nuclear ribonucleoprotein A [Xenopus laevis]
gi|27924189|gb|AAH44979.1| Snf protein [Xenopus laevis]
Length = 282
Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust.
Identities = 117/278 (42%), Positives = 159/278 (57%), Gaps = 51/278 (18%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ + K+RGQA+V+F E ++
Sbjct: 5 EVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSS 64
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPR-----EKKKKQEEKAERKRR 119
A+NA+R MQ FPFYDKPMRIQY+K+ SD +AK G+FV R EK+K + + + +
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVKVPEVQGVKN 124
Query: 120 AEEA---------QQSSMANGTGA------QSNGGTAASFRNANTQETAA---------- 154
A Q ++M N G G A +
Sbjct: 125 AMPGAALLPGVPGQMAAMQNMPGMTQAPRMMHMAGQAPYMHHPGMMPPPGMAPGQMPPGG 184
Query: 155 ---------------------PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP 193
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ +
Sbjct: 185 MPHGQLMPGQMAPMQPISENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRH 244
Query: 194 GIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
IAFVEF+++VQ+ A ++LQGFKIT N M I+FAKK
Sbjct: 245 DIAFVEFDNEVQAGAARESLQGFKITQSNSMKISFAKK 282
>gi|17737284|ref|NP_511045.1| sans fille [Drosophila melanogaster]
gi|1173325|sp|P43332.1|SNRPA_DROME RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A; AltName: Full=Sex
determination protein snf
gi|157172|gb|AAA28441.1| small nuclear ribonucleoprotein [Drosophila melanogaster]
gi|463051|gb|AAA28903.1| nuclear protein [Drosophila melanogaster]
gi|7290566|gb|AAF46017.1| sans fille [Drosophila melanogaster]
gi|16769640|gb|AAL29039.1| LD45302p [Drosophila melanogaster]
gi|220944458|gb|ACL84772.1| snf-PA [synthetic construct]
gi|220954252|gb|ACL89669.1| snf-PA [synthetic construct]
Length = 216
Score = 211 bits (538), Expect = 2e-52, Method: Compositional matrix adjust.
Identities = 121/224 (54%), Positives = 154/224 (68%), Gaps = 12/224 (5%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQTIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +ASN
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASN 64
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPM+I Y+KS SD VAK G+F +++ K+ + + +E +
Sbjct: 65 ALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTF---KERPKKVKPPKPAPGTDEKKDKK 121
Query: 128 MANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVR 187
+ S N N Q PN ILF+ NLP ET ML MLF Q+PGFKEVR
Sbjct: 122 KKPSSAENS---------NPNAQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVR 172
Query: 188 MIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
++ + IAFVEF ++QS+ A +ALQGFKITP + M ITFAKK
Sbjct: 173 LVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>gi|449512082|ref|XP_002199484.2| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Taeniopygia
guttata]
Length = 221
Score = 210 bits (534), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 107/214 (50%), Positives = 143/214 (66%), Gaps = 11/214 (5%)
Query: 22 KKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81
K ELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +++NA+RQ+Q FPFY KP
Sbjct: 15 KLSELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKP 74
Query: 82 MRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGT----GAQSN 137
M IQYAK+ SD ++K G+F +E +K+ K++A+ +QS+ A GA N
Sbjct: 75 MHIQYAKTDSDIISKMRGTFADKENRKE-------KKKAQTLEQSANAPNKKVIQGATQN 127
Query: 138 GGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAF 197
+A N P+ ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAF
Sbjct: 128 SASAPGTTPQNQVPDNPPDYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAF 187
Query: 198 VEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
VEFE++ Q+ A ALQGFKITP + M IT+AKK
Sbjct: 188 VEFENENQAGAARDALQGFKITPSHAMKITYAKK 221
>gi|167518960|ref|XP_001743820.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163777782|gb|EDQ91398.1| predicted protein [Monosiga brevicollis MX1]
Length = 213
Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust.
Identities = 110/230 (47%), Positives = 151/230 (65%), Gaps = 21/230 (9%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+PP+ TIYIKNLN++I+KEEL+R+LY LFSQ+G I DVVALKT K+RGQA++VF +V
Sbjct: 2 DVPPSPTIYIKNLNDRIQKEELRRTLYGLFSQFGGILDVVALKTNKMRGQAFIVFKDVGC 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
ASNA+R MQ FP +DKPM IQYAK+KS KEDG+ Q+ A++++ A+
Sbjct: 62 ASNALRSMQKFPLFDKPMSIQYAKAKSYATMKEDGTL--------QKHLAQQRK----AK 109
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAP---NNILFIQNLPHETTSSMLEMLFQQYP 181
QSS A +NG A TA+ N I++ NLP ETT ML LF +
Sbjct: 110 QSS------ADTNGEPPAKMIKMTPVATASEGTNNTIVYCSNLPQETTKEMLLALFGELK 163
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G EVR++E +P IAFVEF + ++ +A+ AL GF++ ++ M++ FAKK
Sbjct: 164 GLVEVRLVEGRPDIAFVEFSTEQEAGIAISALDGFQVDAEHKMSVAFAKK 213
>gi|260827881|ref|XP_002608892.1| hypothetical protein BRAFLDRAFT_124249 [Branchiostoma floridae]
gi|229294246|gb|EEN64902.1| hypothetical protein BRAFLDRAFT_124249 [Branchiostoma floridae]
Length = 256
Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust.
Identities = 122/255 (47%), Positives = 162/255 (63%), Gaps = 28/255 (10%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ PN TIYI NLNEK+KKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F ++ +
Sbjct: 2 ELRPNHTIYINNLNEKVKKEELKKSLYAIFSQFGQIMDIVALKTLKMRGQAFVIFKDINS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+ A+R MQ FPFYDKPMRI Y+K+ SD +AK G++V R+KK++QE+ ++ +A
Sbjct: 62 ATQALRSMQGFPFYDKPMRIAYSKTDSDAIAKMKGTYVERKKKERQEKVPKKPAPRPQAA 121
Query: 125 QSSM--------------------------ANGTG--AQSNGGTAASFRNANTQETAAPN 156
+ A G G Q A Q PN
Sbjct: 122 APAQIPPQQQQRMQQQPPPMMQQQMAPGGPAPGMGQPPQQMMPGMAQPSQPQPQAEQPPN 181
Query: 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGF 216
NILF+ NLP ETT ML MLF Q+PGFKEVR++ + IAFVEF++++QS A ALQGF
Sbjct: 182 NILFLTNLPEETTEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEMQSGAARDALQGF 241
Query: 217 KITPQNPMAITFAKK 231
KITP + M I+FAKK
Sbjct: 242 KITPTHAMKISFAKK 256
>gi|281202145|gb|EFA76350.1| U2 small nuclear ribonucleoprotein B [Polysphondylium pallidum
PN500]
Length = 246
Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust.
Identities = 103/221 (46%), Positives = 152/221 (68%), Gaps = 4/221 (1%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
NQTIY+ NLNEK K++L LY LFS YG I ++VA K K+RGQA++VF ++T+ASNA
Sbjct: 28 NQTIYVNNLNEKPSKKKLTEQLYSLFSPYGSILEIVAAKRQKMRGQAFIVFKDITSASNA 87
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSM 128
+R+M F F +PM IQYAKSKSD V+K DG+++ ++++++ ++ ++ ++ + + S+
Sbjct: 88 LREMNGFEFLGRPMSIQYAKSKSDAVSKLDGTYIEKKRERENDQDKKKAKKQQTKKPSTT 147
Query: 129 ANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM 188
A A + AA + A PN ILF++NLP + ML MLF Q+PGF+ + M
Sbjct: 148 AKPKAASTANAQAAPLQ----PREAPPNKILFVENLPEQCEEMMLNMLFSQFPGFQGISM 203
Query: 189 IEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
AK G+AFVEF+DD +S++AM LQGFK+TP+ PM I+FA
Sbjct: 204 TTAKKGVAFVEFDDDSKSAVAMTHLQGFKVTPEKPMVISFA 244
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 49/82 (59%), Gaps = 7/82 (8%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPN+ ++++NL E+ EE+ L LFSQ+ F +++ T K +G A+V F + + ++
Sbjct: 169 PPNKILFVENLPEQC--EEM--MLNMLFSQFPG-FQGISMTTAK-KGVAFVEFDDDSKSA 222
Query: 67 NAVRQMQNFPFY-DKPMRIQYA 87
A+ +Q F +KPM I +A
Sbjct: 223 VAMTHLQGFKVTPEKPMVISFA 244
>gi|198434776|ref|XP_002132167.1| PREDICTED: similar to GH24608 isoform 2 [Ciona intestinalis]
Length = 220
Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 121/227 (53%), Positives = 159/227 (70%), Gaps = 8/227 (3%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI P TIY NLNEKIKKEELK+SLY +FSQ+G+I D+VA+KT K+RGQA+V+F E+++
Sbjct: 2 DIKPTHTIYANNLNEKIKKEELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+R MQ FPFYDKPMR+ Y+K SD +AK G++ R K+KK+++K +K +
Sbjct: 62 ATNALRSMQGFPFYDKPMRLAYSKKDSDVIAKMKGTYQERTKEKKKKKKEPKKVQILYIS 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
S+ G GA GG A + N PN+ILF+ NLP ET ML MLF ++ GFK
Sbjct: 122 VSAAPKGQGA---GGRADDDGSKN-----PPNHILFLNNLPPETQEEMLNMLFNRFNGFK 173
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE + Q+S A ALQGFKI+P N M +TFAKK
Sbjct: 174 EVRLVPGRHDIAFVEFEGEQQASEAKGALQGFKISPSNAMKVTFAKK 220
>gi|255710361|gb|ACU31000.1| U1 small nuclear ribonucleoprotein A [Ochlerotatus triseriatus]
Length = 202
Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 104/209 (49%), Positives = 138/209 (66%), Gaps = 24/209 (11%)
Query: 29 SLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAK 88
SLY +FSQ+G+I D+VALKT K+RGQA+++F E+ +A+NA+R MQ FPFYDKPMRI Y+K
Sbjct: 12 SLYAIFSQFGQILDIVALKTLKMRGQAFIIFKEIGSATNAMRTMQGFPFYDKPMRINYSK 71
Query: 89 SKSDCVAKEDGSFVPREKKKK------QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAA 142
+ SD +AK G+F R KK K QE+K +K++ EA ++ ++ T Q
Sbjct: 72 TDSDVIAKMKGTFKERPKKAKAPKPIQQEDKKSKKQKNAEAGAAANSSATAEQP------ 125
Query: 143 SFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFED 202
PN ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF
Sbjct: 126 ------------PNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFAT 173
Query: 203 DVQSSMAMQALQGFKITPQNPMAITFAKK 231
++QS A +ALQGFKITP + M I+FAKK
Sbjct: 174 ELQSGAAREALQGFKITPTHAMKISFAKK 202
>gi|422294869|gb|EKU22169.1| U2 small nuclear ribonucleoprotein B'', partial [Nannochloropsis
gaditana CCMP526]
Length = 289
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 100/228 (43%), Positives = 146/228 (64%), Gaps = 3/228 (1%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
GDIPPNQT+Y++NLNEK+ K LK+ LY FS YGR+ D+VA + LRGQAWVVF V
Sbjct: 65 GDIPPNQTLYVQNLNEKLNKVSLKKLLYLAFSAYGRVIDIVACRGESLRGQAWVVFDSVG 124
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA 123
+A+ A+R +Q FPF KPMRIQ+AK KS+ VA +G++ P K++K+ EK +K+ EE+
Sbjct: 125 SATTALRSLQGFPFLGKPMRIQFAKGKSNAVALREGTYEPGSKRRKRGEKDGKKK--EES 182
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
Q+ S + G + A +++L Q LP E T ML +LF+++ GF
Sbjct: 183 QKLSGSRDEGKRGKEAEAEEHVAGMALAAGEVSSMLMAQELPTECTEEMLAVLFRRFAGF 242
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
E+R+ + GIAF+EF D+V + A QA GFK++ + + +T+AK+
Sbjct: 243 HEIRLA-GQRGIAFIEFRDEVSARTAFQAYNGFKLSQTDALKLTYAKR 289
>gi|148696478|gb|EDL28425.1| mCG19497, isoform CRA_b [Mus musculus]
Length = 203
Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 145/236 (61%), Gaps = 43/236 (18%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPM + K K+ + Q
Sbjct: 62 STNALRQLQGFPFYGKPMEKKKEKKKAKTM----------------------------EQ 93
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAA---------PNNILFIQNLPHETTSSMLEM 175
++ AN Q GT + ANTQ TAA PN ILF+ NLP ET ML M
Sbjct: 94 AAAAANKKPGQ---GTPNA---ANTQGTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSM 147
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
LF Q+PGFKEVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 148 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 203
>gi|198434778|ref|XP_002132163.1| PREDICTED: similar to GH24608 isoform 1 [Ciona intestinalis]
Length = 216
Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust.
Identities = 118/227 (51%), Positives = 155/227 (68%), Gaps = 12/227 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI P TIY NLNEKIKKEELK+SLY +FSQ+G+I D+VA+KT K+RGQA+V+F E+++
Sbjct: 2 DIKPTHTIYANNLNEKIKKEELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKEISS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+R MQ FPFYDKPMR+ Y+K SD +AK G++ R K+KK+++K +K +A A
Sbjct: 62 ATNALRSMQGFPFYDKPMRLAYSKKDSDVIAKMKGTYQERTKEKKKKKKEPKKPKAVSAA 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
G A +G PN+ILF+ NLP ET ML MLF ++ GFK
Sbjct: 122 PKGQGAGGRADDDG------------SKNPPNHILFLNNLPPETQEEMLNMLFNRFNGFK 169
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE + Q+S A ALQGFKI+P N M +TFAKK
Sbjct: 170 EVRLVPGRHDIAFVEFEGEQQASEAKGALQGFKISPSNAMKVTFAKK 216
>gi|149041256|gb|EDL95189.1| rCG27500, isoform CRA_b [Rattus norvegicus]
Length = 203
Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust.
Identities = 116/236 (49%), Positives = 144/236 (61%), Gaps = 43/236 (18%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPM + K K+ + Q
Sbjct: 62 STNALRQLQGFPFYGKPMEKKKEKKKAKTM----------------------------EQ 93
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAA---------PNNILFIQNLPHETTSSMLEM 175
++ AN Q GT S ANTQ AA PN ILF+ NLP ET ML M
Sbjct: 94 AAAAANKKPGQ---GTPNS---ANTQGNAAPNPQVPDYPPNYILFLNNLPEETNEMMLSM 147
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
LF Q+PGFKEVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 148 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 203
>gi|301115920|ref|XP_002905689.1| U1 small nuclear ribonucleoprotein A [Phytophthora infestans T30-4]
gi|262110478|gb|EEY68530.1| U1 small nuclear ribonucleoprotein A [Phytophthora infestans T30-4]
Length = 233
Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust.
Identities = 101/229 (44%), Positives = 151/229 (65%), Gaps = 8/229 (3%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
T D+PPN T+Y+ NLN+KIK + +K +LY SQYG+I ++V + +LRGQAWV F +V
Sbjct: 13 TADVPPNHTLYLNNLNDKIKADRMKATLYATLSQYGKILEIVMGRARRLRGQAWVTFDDV 72
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
+AS+A+R + +DKP+ I +AK K+D +A+ +GSFVPREK+K+ + K E++ ++
Sbjct: 73 PSASSALRTVNGTTLFDKPVVIHFAKEKADVIARREGSFVPREKRKR-DPKPEQQTTKKQ 131
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
A + A TG+ + +N PN ILF++ LP ML +LF+QY G
Sbjct: 132 ASANGSAAATGSSTAAQPRMPAQN-------LPNKILFLEELPESCNKEMLGVLFKQYQG 184
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
FKEVRM+ K G+AFVEF D+ Q+++A+Q L GFK+TP + ++FAKK
Sbjct: 185 FKEVRMVPGKKGLAFVEFGDEAQAAIALQGLFGFKLTPTEALKVSFAKK 233
>gi|344298221|ref|XP_003420792.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Loxodonta
africana]
Length = 200
Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 107/224 (47%), Positives = 145/224 (64%), Gaps = 31/224 (13%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K R++R ++Q++
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRK--------REKRKPKSQETP 119
Query: 128 MANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVR 187
A GG AAS A Q P + ++PGFKEVR
Sbjct: 120 AAKKA---VQGGAAASVVGA-VQGPVPPRGL-------------------ARFPGFKEVR 156
Query: 188 MIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
++ + IAFVEF+++VQ+ A ALQGFKIT N M I+FAKK
Sbjct: 157 LVPGRHDIAFVEFDNEVQAGAARDALQGFKITQSNAMKISFAKK 200
>gi|312069861|ref|XP_003137879.1| hypothetical protein LOAG_02293 [Loa loa]
Length = 223
Score = 202 bits (514), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 147/230 (63%), Gaps = 11/230 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PN TIYI NLNEK KKEELK++LY +FSQ+G+I D++A KT K+RGQA V+F E+++
Sbjct: 2 DVKPNHTIYINNLNEKTKKEELKKALYAIFSQFGQIIDIMAFKTLKMRGQAHVIFKEISS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK---KQEEKAERKRRAE 121
A+NA+R MQ FPFYDKPMRIQ+A+ SD +AK G++V R KK KQ +RK+
Sbjct: 62 ATNALRAMQGFPFYDKPMRIQFAREDSDVIAKAKGTYVDRPKKHLLAKQAAGEKRKKTNH 121
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
+ M GA G T ++ PN ILF NLP ETT ML +LF YP
Sbjct: 122 VKESKKMRIDKGA--TGKTELP------EKANPPNKILFCTNLPEETTEQMLSLLFNPYP 173
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G K++R I +P IAFVEFE + +++ A L FKITP M + +A K
Sbjct: 174 GLKDIRRIPNRPDIAFVEFETEAEATSARAGLNNFKITPSQSMYVNYANK 223
>gi|363731244|ref|XP_003640940.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' isoform 1 [Gallus
gallus]
Length = 207
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 106/209 (50%), Positives = 145/209 (69%), Gaps = 4/209 (1%)
Query: 24 EELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83
++LKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +++NA+RQ+Q FPFY KPMR
Sbjct: 2 QKLKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMR 61
Query: 84 IQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAAS 143
IQYAK+ SD ++K G+F +EK+K++++ ++ A A + + GA N +A
Sbjct: 62 IQYAKTDSDIISKMRGTFADKEKRKEKKKAKSLEQSANAANKKII---QGATQNSTSAPG 118
Query: 144 FRNANTQ-ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFED 202
N Q PN ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEFE+
Sbjct: 119 TSPQNQQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFEN 178
Query: 203 DVQSSMAMQALQGFKITPQNPMAITFAKK 231
+ Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 ECQAGAARDALQGFKITPSHAMKITYAKK 207
>gi|393909446|gb|EFO26195.2| hypothetical protein LOAG_02293 [Loa loa]
Length = 254
Score = 202 bits (513), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 112/230 (48%), Positives = 147/230 (63%), Gaps = 11/230 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PN TIYI NLNEK KKEELK++LY +FSQ+G+I D++A KT K+RGQA V+F E+++
Sbjct: 33 DVKPNHTIYINNLNEKTKKEELKKALYAIFSQFGQIIDIMAFKTLKMRGQAHVIFKEISS 92
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK---KQEEKAERKRRAE 121
A+NA+R MQ FPFYDKPMRIQ+A+ SD +AK G++V R KK KQ +RK+
Sbjct: 93 ATNALRAMQGFPFYDKPMRIQFAREDSDVIAKAKGTYVDRPKKHLLAKQAAGEKRKKTNH 152
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
+ M GA G T ++ PN ILF NLP ETT ML +LF YP
Sbjct: 153 VKESKKMRIDKGA--TGKTELP------EKANPPNKILFCTNLPEETTEQMLSLLFNPYP 204
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G K++R I +P IAFVEFE + +++ A L FKITP M + +A K
Sbjct: 205 GLKDIRRIPNRPDIAFVEFETEAEATSARAGLNNFKITPSQSMYVNYANK 254
>gi|149263421|ref|XP_995150.2| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 309
Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 116/273 (42%), Positives = 155/273 (56%), Gaps = 50/273 (18%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQ +V+F EVT A+NA
Sbjct: 12 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSQSLKMRGQVFVIFKEVTIATNA 71
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK-KKQEEKAERKRRAEEAQQ-- 125
+ M FPFYDKPMRIQY K++SD +AK G+FV R+ K +K++ K++ A++A Q
Sbjct: 72 LWSMLGFPFYDKPMRIQYTKTESDNIAKMKGTFVERDHKGEKRKPKSQETPAAKKAVQGG 131
Query: 126 -------------------------------------SSMANGTG---AQSNGGTAASFR 145
+ M TG Q G +
Sbjct: 132 AAAPVVGAVQPVPGMPPMPQAPRIMHHVPGQPPYMPPAGMIPPTGLAPGQIPPGAMPPQQ 191
Query: 146 NANTQETAAP-------NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFV 198
Q AP N+ILF+ NLP ET ML MLF Q+PGFKE ++ IAFV
Sbjct: 192 LMPGQMPPAPPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEAHLVPGCHDIAFV 251
Query: 199 EFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EF+++VQ+ A+ ALQGFKIT N M I+F KK
Sbjct: 252 EFDNEVQAGAALDALQGFKITQNNAMKISFVKK 284
>gi|440801091|gb|ELR22116.1| hypothetical protein ACA1_159130 [Acanthamoeba castellanii str.
Neff]
Length = 270
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 113/269 (42%), Positives = 161/269 (59%), Gaps = 44/269 (16%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++PPN+T+Y+ NLNEK+K++EL+++LY LFSQYG + D+VA K+ KLRGQA+V+F ++ +
Sbjct: 4 EVPPNETLYVNNLNEKVKRDELRKALYGLFSQYGTVLDIVAQKSLKLRGQAFVIFRDIGS 63
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV--------PREKKKKQEEKAER 116
AS A++ +Q+F FYDKPM IQYAKSKSD VAK G+FV + K K ++++
Sbjct: 64 ASTALKALQSFAFYDKPMHIQYAKSKSDLVAKIRGTFVPREKRPREEKPKPKPKKKETPA 123
Query: 117 KRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
K+ +EA Q+++A G A GG A + PN +LF+QNLP +TT ML ML
Sbjct: 124 KKPKDEASQAALAPGQAAP--GGGATGPAAPPQPKPNPPNKLLFVQNLPDQTTELMLSML 181
Query: 177 FQQYPGFKE----------------------------------VRMIEAKPGIAFVEFED 202
FQQY V M+ K GIAFVEF
Sbjct: 182 FQQYAITTILNININITIVTTIVNSNNVAITIRLTTRLAIVFVVDMVPGKQGIAFVEFNS 241
Query: 203 DVQSSMAMQALQGFKITPQNPMAITFAKK 231
++++++AM LQ FKITP + M ++FAKK
Sbjct: 242 EMEAAVAMTGLQHFKITPTHLMVVSFAKK 270
>gi|359358253|gb|AEV40671.1| SNF [Antheraea pernyi]
Length = 228
Score = 200 bits (509), Expect = 4e-49, Method: Compositional matrix adjust.
Identities = 112/236 (47%), Positives = 150/236 (63%), Gaps = 14/236 (5%)
Query: 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVV------ALKTPKLRGQA 55
+T DI PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D + P
Sbjct: 1 MTMDIRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQICDSCDHDYEFDAQCPGCMPAG 60
Query: 56 WVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE 115
+ E+++A+ A+R MQ FPFYDKPMRIQY+K+ SD +AK G+F R K+ K + +
Sbjct: 61 RRL--EISSATVALRSMQGFPFYDKPMRIQYSKTDSDVIAKIKGTFQERPKRPKMPKGTD 118
Query: 116 RKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEM 175
++ + S GA + G N N ++ PN ILF+ NLP ET+ ML M
Sbjct: 119 DSKKKKGKDVSRPGAVHGANAPG----VLNNINVEQ--PPNQILFLTNLPDETSEMMLSM 172
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
LF Q+PGFKEVR++ + IAFVEF +++QS+ A +ALQGFKITP + M ITFAKK
Sbjct: 173 LFNQFPGFKEVRLVPNRHDIAFVEFGNEMQSAAAKEALQGFKITPTHAMKITFAKK 228
>gi|308457660|ref|XP_003091200.1| CRE-RNP-3 protein [Caenorhabditis remanei]
gi|308257954|gb|EFP01907.1| CRE-RNP-3 protein [Caenorhabditis remanei]
Length = 223
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 101/231 (43%), Positives = 139/231 (60%), Gaps = 12/231 (5%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
DI PN T+Y+ NLNEKIK++ELKRSL+ +F+Q+G I +++ + K+RGQA VVF E++
Sbjct: 2 ADINPNHTVYVNNLNEKIKRDELKRSLHMIFTQFGEIIQLMSFRKEKMRGQAHVVFKEIS 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA 123
+ASNA+R +Q FPFY KPMRIQYA+ SD +A+ G+FV EK K A
Sbjct: 62 SASNALRALQGFPFYGKPMRIQYAREDSDVIARAKGTFV---------EKRATKSVTRSA 112
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAA---PNNILFIQNLPHETTSSMLEMLFQQY 180
+ TG + G A N T ET PNNILF N+P ET ++ +F Q+
Sbjct: 113 AKKPYDKPTGKEHKKGGDAEKVNTETTETEGPGQPNNILFCSNIPDETDPEQIQTIFGQF 172
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PG +EVR + AF+E+E + S A QAL F+ITP + + + FA K
Sbjct: 173 PGLREVRWMPNTKDFAFIEYESEDHSESARQALDNFRITPNHQIKVKFASK 223
>gi|170588483|ref|XP_001899003.1| U1 small nuclear ribonucleoprotein A [Brugia malayi]
gi|158593216|gb|EDP31811.1| U1 small nuclear ribonucleoprotein A, putative [Brugia malayi]
Length = 233
Score = 200 bits (508), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 147/230 (63%), Gaps = 11/230 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PN TIYI NLNEK KKEELK++LY +FSQ+G+I D++A KT K+RGQA V+F E+++
Sbjct: 12 DVKPNHTIYINNLNEKTKKEELKKALYAIFSQFGQIIDIMAFKTLKMRGQAHVIFKEISS 71
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK---KQEEKAERKRRAE 121
A+NA+R MQ FPFYDKPMRIQ+A+ SD +AK G+++ R KK KQ +RK+ +
Sbjct: 72 ATNALRAMQGFPFYDKPMRIQFAREDSDVIAKAKGTYIDRPKKHLLAKQAAGEKRKKTSH 131
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
+ M A+ + ++ PN ILF NLP ETT ML +LF YP
Sbjct: 132 VKENKKM--------RMDKIATGKTELPEKANPPNKILFCTNLPEETTEQMLSLLFNPYP 183
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G K++R I +P IAFVEFE + +++ A L FKITP M + +A K
Sbjct: 184 GLKDIRRIPNRPDIAFVEFETEAEATSARSGLNNFKITPSQSMYVNYANK 233
>gi|402584435|gb|EJW78376.1| U1 small nuclear ribonucleoprotein A [Wuchereria bancrofti]
Length = 241
Score = 199 bits (507), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 108/230 (46%), Positives = 147/230 (63%), Gaps = 11/230 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D+ PN TIYI NLNEK KKEELK++LY +FSQ+G+I D++A KT K+RGQA V+F E+++
Sbjct: 20 DVKPNHTIYINNLNEKTKKEELKKALYAIFSQFGQIIDIMAFKTLKMRGQAHVIFKEISS 79
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK---KQEEKAERKRRAE 121
A+NA+R MQ FPFYDKPMRIQ+A+ SD +AK G+++ R KK KQ +RK+ +
Sbjct: 80 ATNALRAMQGFPFYDKPMRIQFAREDSDVIAKAKGTYIDRPKKHLLAKQAAGEKRKKTSH 139
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
+ M A+ + ++ PN ILF NLP ETT ML +LF YP
Sbjct: 140 VKENKKM--------RMDKIATGKTELPEKANPPNKILFCTNLPEETTEQMLSLLFNPYP 191
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G K++R I +P IAFVEFE + +++ A L FKITP M + +A K
Sbjct: 192 GLKDIRRIPNRPDIAFVEFETEAEATSARAGLNNFKITPSQSMYVNYANK 241
>gi|348683636|gb|EGZ23451.1| hypothetical protein PHYSODRAFT_484798 [Phytophthora sojae]
Length = 236
Score = 199 bits (505), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 98/229 (42%), Positives = 151/229 (65%), Gaps = 8/229 (3%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
T D+PPN T+Y+ NLN+KIK + +K +LY SQ+G+I ++V + +LRGQAWV F ++
Sbjct: 16 TADVPPNHTLYLNNLNDKIKADRMKATLYASLSQHGKILEIVMGRARRLRGQAWVTFDDI 75
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
+ASNA+R + +DKP+ I +AK K+D +A+ +GSFVPREK+K+ + A+++++A++
Sbjct: 76 PSASNALRAVNGSVLFDKPVVIHFAKEKADVIARREGSFVPREKRKRDPKPAQQQQQAKK 135
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
A G++ S PN ILF++ LP ML +LF+QY G
Sbjct: 136 QAGEGGAA--------GSSGSVPPPPPPAQNVPNKILFLEALPESCNKEMLSVLFKQYQG 187
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
FKEVRM+ K G+AFVEF D+ Q+++A+Q L GFK+TP + + ++FAKK
Sbjct: 188 FKEVRMVPGKKGLAFVEFGDEAQAAIALQGLFGFKLTPTDALKVSFAKK 236
>gi|449512588|ref|XP_004176179.1| PREDICTED: U2 small nuclear ribonucleoprotein B'' [Taeniopygia
guttata]
Length = 221
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 103/210 (49%), Positives = 141/210 (67%), Gaps = 3/210 (1%)
Query: 22 KKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81
K ELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +++NA+RQ+Q FPFY KP
Sbjct: 15 KLSELKRSLYVLFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKP 74
Query: 82 MRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTA 141
M IQYAK+ SD +++ G+F +EK+K++++ ++ A + + GA N +A
Sbjct: 75 MHIQYAKTDSDIISEMRGTFADKEKRKEKKKAKTLEQSANAPNKKVI---QGATQNSASA 131
Query: 142 ASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFE 201
N PN ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEFE
Sbjct: 132 PGTTPQNQVPDNPPNCILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFE 191
Query: 202 DDVQSSMAMQALQGFKITPQNPMAITFAKK 231
++ Q+ A ALQGFKI P + M IT+AKK
Sbjct: 192 NENQAGAARDALQGFKIPPSHAMKITYAKK 221
>gi|390333482|ref|XP_789234.3| PREDICTED: U1 small nuclear ribonucleoprotein A-like
[Strongylocentrotus purpuratus]
Length = 235
Score = 197 bits (501), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 105/232 (45%), Positives = 146/232 (62%), Gaps = 25/232 (10%)
Query: 25 ELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84
+LK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F ++T+A++A+R MQ FPFYDKPMRI
Sbjct: 4 KLKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFRDITSATSALRSMQGFPFYDKPMRI 63
Query: 85 QYAKSKSDCVAKEDGSFVPREKK--KKQEEKAERKRRAEEAQQSSMANGTGAQSN----- 137
Y K+KSD +AK G++VPREK+ KK+ E+ + R+ + + + + +Q
Sbjct: 64 GYCKTKSDAIAKMQGTYVPREKRVEKKKVEEPVKGRKNRQNRHADVVIPPPSQIPMPGAP 123
Query: 138 ----------GGTAASFRNANTQETAA--------PNNILFIQNLPHETTSSMLEMLFQQ 179
G Q A PNNILF+ NLP ET MLE+LF+Q
Sbjct: 124 PAANQPPPLLGEMPMQMGQPPIQVPTAPAPVVPDEPNNILFLTNLPEETNELMLEVLFKQ 183
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+ G+KEVR++ + IAFVEF ++ QS A ALQGFKITP N + I +AKK
Sbjct: 184 FNGYKEVRLVPGRHDIAFVEFANEQQSGTAKDALQGFKITPTNTLKIAYAKK 235
>gi|325182719|emb|CCA17174.1| U1 small nuclear ribonucleoprotein A putative [Albugo laibachii
Nc14]
Length = 234
Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust.
Identities = 101/235 (42%), Positives = 142/235 (60%), Gaps = 30/235 (12%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D PP T+YI NLN+KIK + LK+SLY FSQ+G++ ++ K LRGQAW+ F +V +
Sbjct: 22 DNPPIHTLYIHNLNDKIKPDRLKQSLYASFSQFGKVLEIAIFKARFLRGQAWITFDDVPS 81
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK--------KKQEEKAER 116
ASNA+R M N +DK M +Q+AK +SD +A+ +G+FVPREK+ K EE ER
Sbjct: 82 ASNALRSMNNTTIFDKNMIVQFAKQESDVIARRNGTFVPREKQSRDVPHSSKSDEEMRER 141
Query: 117 KRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
KR + A Q P++ILF+Q+LP ML +L
Sbjct: 142 KR---------------------SMAPPPPPPRQSQHLPHHILFLQDLPPSCNQDMLRVL 180
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F+QY G+KEVRM+ K +AFVEF D+ Q+S+A+Q L GFK+T + + I+FAK+
Sbjct: 181 FEQYHGYKEVRMVPGK-SLAFVEFGDESQASVALQGLYGFKLTSTDVLKISFAKR 234
>gi|449513226|ref|XP_002193869.2| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Taeniopygia
guttata]
Length = 322
Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust.
Identities = 101/207 (48%), Positives = 139/207 (67%), Gaps = 3/207 (1%)
Query: 25 ELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84
ELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +++NA+RQ+Q FPFY KPM I
Sbjct: 119 ELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMHI 178
Query: 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASF 144
QYAK+ SD +++ G+F +EK+K++++ ++ A + + GA N +A
Sbjct: 179 QYAKTDSDIISEMRGTFADKEKRKEKKKAKTLEQSANAPNKKVI---QGATQNSASAPGT 235
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDV 204
N PN ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEFE++
Sbjct: 236 TPQNQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENEN 295
Query: 205 QSSMAMQALQGFKITPQNPMAITFAKK 231
Q+ A ALQGFKI + M IT+AKK
Sbjct: 296 QAGAARDALQGFKIPLSHAMKITYAKK 322
>gi|326428976|gb|EGD74546.1| hypothetical protein PTSG_05910 [Salpingoeca sp. ATCC 50818]
Length = 215
Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust.
Identities = 99/231 (42%), Positives = 145/231 (62%), Gaps = 27/231 (11%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y+ NLN+KI KEEL+RSLY LFSQ+G I DVVALKTPK+RGQA++ F ++T A+N
Sbjct: 5 PNQTLYVNNLNDKIHKEELRRSLYFLFSQFGPILDVVALKTPKMRGQAFIAFKDITCATN 64
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS---FVPREKKK----KQEEKAERKRRA 120
A+R +Q+F + KPM+I YAKSKS KEDG+ ++ +++KK +EE A + R
Sbjct: 65 AMRALQSFNLFGKPMKIAYAKSKSIASMKEDGTYQRYLAKQRKKTSGRDEEEPATKAART 124
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
E +++ +G A N IL++ +LP T S + LF ++
Sbjct: 125 ETGRRAMDESG--------------------DAGTNKILYVSHLPPTATKSDVHNLFAKF 164
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G EVRM++ +P + FVE+E S++AMQ L GF + N +++T+AKK
Sbjct: 165 EGLVEVRMVDGRPDMCFVEYETARASAVAMQNLDGFSMGEDNTLSVTYAKK 215
>gi|17541322|ref|NP_500505.1| Protein RNP-3 [Caenorhabditis elegans]
gi|351064353|emb|CCD72714.1| Protein RNP-3 [Caenorhabditis elegans]
Length = 217
Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust.
Identities = 98/231 (42%), Positives = 140/231 (60%), Gaps = 18/231 (7%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
DI PN TIY+ NLNEK+KK+ELKRSL+ +F+Q+G I +++ + K+RGQA +VF EV+
Sbjct: 2 ADINPNHTIYVNNLNEKVKKDELKRSLHMVFTQFGEIIQLMSFRKEKMRGQAHIVFKEVS 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA 123
+ASNA+R +Q FPFY KPMRIQYA+ SD +++ G+FV + +K + K ++ A+
Sbjct: 62 SASNALRALQGFPFYGKPMRIQYAREDSDVISRAKGTFVEKRQKSTKIAKKPYEKPAK-- 119
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQET---AAPNNILFIQNLPHETTSSMLEMLFQQY 180
NG +AA QET PNNILF N+P T ++ +F Q+
Sbjct: 120 -------------NGKSAAEPTQKEPQETDGPGLPNNILFCSNIPEGTEPEQIQTIFSQF 166
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PG +EVR + AF+E+E + S A QAL F+ITP + + FA K
Sbjct: 167 PGLREVRWMPNTKDFAFIEYESEDLSEPARQALDNFRITPTQQITVKFASK 217
>gi|167537765|ref|XP_001750550.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163770971|gb|EDQ84646.1| predicted protein [Monosiga brevicollis MX1]
Length = 345
Score = 189 bits (480), Expect = 8e-46, Method: Compositional matrix adjust.
Identities = 104/250 (41%), Positives = 149/250 (59%), Gaps = 26/250 (10%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+YI NL+E++K++ELK++L +F+Q+G+I VVA+ + K RGQA+VVF + AA
Sbjct: 95 PNQTLYINNLSERVKEDELKKALEAIFNQFGKILRVVAMSSFKRRGQAFVVFDSIEAAEK 154
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRR------AE 121
A+ MQ+FPF KPMRI +AK+KSD VAK DG+F PR K A
Sbjct: 155 ALNAMQSFPFCGKPMRINFAKTKSDIVAKNDGAFKPRVKAPLGPRPTPPGGGQAPYPGAG 214
Query: 122 EAQQSSMANGT-----GAQSNGGTAASFRNANTQETAA---------------PNNILFI 161
E Q+ + G G +G A +TA P+ ILF+
Sbjct: 215 EYMQAPGSPGEPSSKRGRYESGEAAPPPPPGPPGQTAPSGHAPAAPPPNMAEDPSPILFL 274
Query: 162 QNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ 221
+NLP + T ML LF+++PGFKEVR++ +P I FVE+E++VQ+S A+ AL G ++TP
Sbjct: 275 ENLPSDRTQEMLTALFKEFPGFKEVRLVPIRPDIGFVEYENEVQASAALPALNGKEVTPG 334
Query: 222 NPMAITFAKK 231
N M ++F+KK
Sbjct: 335 NKMRVSFSKK 344
>gi|268553735|ref|XP_002634854.1| C. briggsae CBR-RNP-3 protein [Caenorhabditis briggsae]
Length = 220
Score = 189 bits (479), Expect = 9e-46, Method: Compositional matrix adjust.
Identities = 96/228 (42%), Positives = 136/228 (59%), Gaps = 9/228 (3%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
DI PN TIY+ NLNEK+K++ELKRSL+ +F+QYG I +++ + ++RGQA +VF EV+
Sbjct: 2 ADINPNHTIYVNNLNEKVKRDELKRSLHMIFAQYGEIIQLMSFRKERMRGQAHIVFKEVS 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA 123
+ASNA+R +Q FPFY KPMRIQYA+ SD +A+ GS+V E++A+ RA +
Sbjct: 62 SASNALRALQGFPFYGKPMRIQYAREDSDVIARAKGSYV--------EKRAKTTARAAKK 113
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
NG N + PNNILF N+P T ++ +F Q+PG
Sbjct: 114 PYEKPKNGEKRPEGEEKEKETTAEN-EGPGLPNNILFCSNIPDGTDPDQIQHIFGQFPGL 172
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+EVR + AFVE+E + S A QAL F+ITP + + + FA K
Sbjct: 173 REVRWMPNTKDFAFVEYESEDMSEPARQALDNFRITPSHQIKVKFATK 220
>gi|349605397|gb|AEQ00652.1| U2 small nuclear ribonucleoprotein B''-like protein, partial [Equus
caballus]
Length = 197
Score = 186 bits (473), Expect = 5e-45, Method: Compositional matrix adjust.
Identities = 99/200 (49%), Positives = 135/200 (67%), Gaps = 3/200 (1%)
Query: 32 CLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKS 91
LFSQ+G + D+VALKT K+RGQA+V+F E+ +++NA+RQ+Q FPFY KPMRIQYAK+ S
Sbjct: 1 ALFSQFGHVVDIVALKTMKMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDS 60
Query: 92 DCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQE 151
D ++K G+F +EKKK++++ ++ A A + G G ++ T +
Sbjct: 61 DIISKMRGTFADKEKKKEKKKAKTVEQTATTANKKP---GQGTPNSVNTQGNSTPNPQVP 117
Query: 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQ 211
PN ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEFE+D Q+ A
Sbjct: 118 DYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARD 177
Query: 212 ALQGFKITPQNPMAITFAKK 231
ALQGFKITP + M IT+AKK
Sbjct: 178 ALQGFKITPSHAMKITYAKK 197
>gi|309266585|ref|XP_003086803.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 282
Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 111/275 (40%), Positives = 151/275 (54%), Gaps = 51/275 (18%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI +LNEKIKK+ELK+S Y +FSQ+G+I D++ ++ K+RGQ++V+F EV++ N
Sbjct: 8 PNHTIYINSLNEKIKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFKEVSSTIN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPRE-KKKKQEEKAERKRRAEEA-QQ 125
A+R MQ FPFY KPM IQYAK+ SD +AK G+FV R+ K++K++ K++ K A++A Q
Sbjct: 68 ALRSMQGFPFYGKPMHIQYAKTDSDIIAKMKGTFVERDHKREKRKPKSQEKPAAKKAVQG 127
Query: 126 SSMANGTGA------------------QSNGGTAASFR-----------NANTQETAAPN 156
+ A GA G R A P
Sbjct: 128 GAAAPVVGAVQPPVPGMPPMPQAPRVMHHMPGQPPYMRPPGMILPPGLPPGQIPSRAMPP 187
Query: 157 NILFIQNLPH--------------------ETTSSMLEMLFQQYPGFKEVRMIEAKPGIA 196
L +PH ET ML MLF Q+PGFKEVR++ + I
Sbjct: 188 QQLIPGQMPHAQPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEVRLVPGRHDID 247
Query: 197 FVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
FVEF+++VQ+ A LQGFKIT N M I+FAKK
Sbjct: 248 FVEFDNEVQAGAARDVLQGFKITQNNAMKISFAKK 282
>gi|341897441|gb|EGT53376.1| CBN-RNP-2 protein [Caenorhabditis brenneri]
Length = 206
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 144/228 (63%), Gaps = 23/228 (10%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
++ PN T+YI NLNEKIK EEL++SL +F Q+G I V+ +T ++RGQA V+F++++
Sbjct: 2 AELAPNSTLYINNLNEKIKIEELRKSLIAVFKQFGEIVSVMCFRTLRMRGQAHVIFTDIS 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA 123
AAS A + FPFY+KPM+IQ+A+ +D +AK+ G+++ R+ K EK ++K R+++
Sbjct: 62 AASAAKEALTGFPFYEKPMKIQFAREDADIIAKQKGTYMDRQ-PKYLSEKIQKKPRSKK- 119
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
+ NGG + A PN ILF NLP T+ MLE++F Q+PG
Sbjct: 120 -----------RENGG----------EGPAPPNKILFCTNLPDNATAEMLEIMFNQFPGL 158
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
K++RM+ +PGIAFVEF+ D + A L F+I+ ++ M + +AKK
Sbjct: 159 KDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFRISAEHVMRVDYAKK 206
>gi|17541324|ref|NP_500504.1| Protein RNP-2 [Caenorhabditis elegans]
gi|351064354|emb|CCD72715.1| Protein RNP-2 [Caenorhabditis elegans]
Length = 206
Score = 186 bits (472), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 98/230 (42%), Positives = 137/230 (59%), Gaps = 27/230 (11%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
++ PN T+YI NLNEKIK +EL++SL +F Q+G I V+ +T K+RGQA V+F E+
Sbjct: 2 AEVAPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFKELP 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE--KAERKRRAE 121
AAS A + FPFY+KPMRIQ+A+ SD VA+E G+++ RE K E+ K + R+ E
Sbjct: 62 AASAAREALNGFPFYEKPMRIQFAREDSDVVAQEKGTYIKREPKYLSEKILKKPKSRKKE 121
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
NGG A PN ILF NLP T+ MLE++F Q+
Sbjct: 122 ---------------NGGDGP----------APPNKILFCTNLPDSATAEMLEIMFNQFA 156
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G K++RM+ +PGIAFVEF+ D + A L FKI+ ++ M + +AKK
Sbjct: 157 GLKDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFKISAEHTMRVDYAKK 206
>gi|307190556|gb|EFN74543.1| U1 small nuclear ribonucleoprotein A [Camponotus floridanus]
Length = 184
Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 99/187 (52%), Positives = 126/187 (67%), Gaps = 9/187 (4%)
Query: 51 LRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ 110
+RGQA+V+F E+ +ASNA+R MQ FPFYDKPMRIQYAK+ SD +AK G+F R KK K+
Sbjct: 1 MRGQAFVIFKEIASASNALRSMQGFPFYDKPMRIQYAKTDSDVIAKMKGTFAERPKKPKR 60
Query: 111 -----EEKAER-KRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164
+E+A+R K+RA+E Q+ + G N N E PN ILF+ NL
Sbjct: 61 IIPAADEEAKRAKKRAKE--QAKHSQQVGYHPNVPQHPGLVNTAVPEQP-PNQILFLTNL 117
Query: 165 PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPM 224
P ET+ ML MLF Q+PGFKEVR++ + IAFVEFE++VQS A ALQGFKITP + M
Sbjct: 118 PDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAM 177
Query: 225 AITFAKK 231
I+FAKK
Sbjct: 178 KISFAKK 184
>gi|268553733|ref|XP_002634853.1| C. briggsae CBR-RNP-2 protein [Caenorhabditis briggsae]
Length = 206
Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 139/227 (61%), Gaps = 23/227 (10%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
+I PN T+YI NLNEKIK +EL++SL+ +F Q+G I DV+ +T K+RGQA ++F+E+
Sbjct: 3 EIQPNSTLYINNLNEKIKIDELRKSLFAVFKQFGEILDVMCFRTLKMRGQAHIIFAEIPH 62
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+ A + FPFY+KPM+IQ+A+ +D +AKE G++V R+ K E+ ++
Sbjct: 63 ATAAKEALSGFPFYEKPMKIQFAREDADRIAKEKGTYVERKPKYMSEKVQKK-------- 114
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ R+A + A PN ILF NLP T+ MLE++F Q+PG K
Sbjct: 115 ---------------PKSKKRDAGGEGPAPPNKILFCTNLPDSATAEMLEIMFNQFPGLK 159
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
++RM+ +PGIAFVEF+ D + A L F+I+ ++ M + +AKK
Sbjct: 160 DIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFRISAEHVMRVDYAKK 206
>gi|112983808|ref|NP_001037384.1| U1 small nuclear ribonucleoprotein A [Bombyx mori]
gi|76496416|gb|ABA43713.1| SNF [Bombyx mori]
Length = 209
Score = 184 bits (467), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 104/200 (52%), Positives = 137/200 (68%), Gaps = 7/200 (3%)
Query: 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61
+T DI PN TIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VA+KT K+RGQA+V+F E
Sbjct: 1 MTMDIRPNHTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVAMKTLKMRGQAFVIFKE 60
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAE 121
+++A+ A+R MQ FPFYDKPMRIQY+K SD +AK G+F R K+ K + + ++ +
Sbjct: 61 ISSATVALRSMQGFPFYDKPMRIQYSKIDSDIIAKSKGTFQERPKRPKLPKGTDDGKKKK 120
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
S + G G A N N ++ PN ILF+ NLP ET+ ML MLF Q+P
Sbjct: 121 NKDPSRLI-GHGIPG----AGILNNVNAEQ--PPNQILFLTNLPDETSEMMLSMLFNQFP 173
Query: 182 GFKEVRMIEAKPGIAFVEFE 201
GFKEVR++ + IAFVE E
Sbjct: 174 GFKEVRLVPNRHDIAFVELE 193
>gi|332022263|gb|EGI62578.1| U2 small nuclear ribonucleoprotein B'' [Acromyrmex echinatior]
Length = 184
Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 98/187 (52%), Positives = 129/187 (68%), Gaps = 9/187 (4%)
Query: 51 LRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ 110
+RGQA+V+F E+ +A+NA+R MQ FPFYDKPMRIQYAK+ SD +AK G+F R KK K+
Sbjct: 1 MRGQAFVIFKEIASATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFAERPKKPKR 60
Query: 111 -----EEKAER-KRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164
+E+A+R K+RA+E Q+ + G ++ + NA E PN ILF+ NL
Sbjct: 61 VIPVADEEAKRAKKRAKE--QAKHSQQIGYHASIPQHSGLVNAAVPEQP-PNQILFLTNL 117
Query: 165 PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPM 224
P ET+ ML MLF Q+PGFKEVR++ + IAFVEFE++VQS A ALQGFKITP + M
Sbjct: 118 PDETSEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFENEVQSGAAKDALQGFKITPSHAM 177
Query: 225 AITFAKK 231
I+FAKK
Sbjct: 178 KISFAKK 184
>gi|148689095|gb|EDL21042.1| mCG15722 [Mus musculus]
Length = 281
Score = 183 bits (465), Expect = 4e-44, Method: Compositional matrix adjust.
Identities = 108/274 (39%), Positives = 143/274 (52%), Gaps = 50/274 (18%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI +LNEKIKK+ELK+S Y +FSQ+G+I D++ ++ K+RGQ++V+F EV++ N
Sbjct: 8 PNHTIYINSLNEKIKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFKEVSSTIN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK------KKQEEKAERKR--- 118
A+R MQ FPFY KPM IQYAK+ SD +AK G+FV R+ K K QE+ A +KR
Sbjct: 68 ALRSMQGFPFYGKPMHIQYAKTDSDIIAKMKGTFVERDHKREKRKPKSQEKPAAKKRLFR 127
Query: 119 --------------------RAEEAQQSSMANGTGAQSNGGT-AASFRNANTQETAAPNN 157
+A + G A P
Sbjct: 128 WGSAPVVGAVQPVPGMPPMPQAPRVMHHMPGQPPYMRPPGMILPPGLPPGQIPSRAMPPQ 187
Query: 158 ILFIQNLPH--------------------ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAF 197
L +PH ET ML MLF Q+PGFKEVR++ + I F
Sbjct: 188 QLIPGQMPHAQPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEVRLVPGRHDIDF 247
Query: 198 VEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
VEF+++VQ+ A LQGFKIT N M I+FAKK
Sbjct: 248 VEFDNEVQAGAARDVLQGFKITQNNAMKISFAKK 281
>gi|63592914|ref|XP_356179.3| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1 [Mus
musculus]
Length = 281
Score = 182 bits (462), Expect = 9e-44, Method: Compositional matrix adjust.
Identities = 106/274 (38%), Positives = 147/274 (53%), Gaps = 50/274 (18%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI +LNEKIKK+ELK+S Y +FSQ+G+I D++ ++ K+RGQ++V+F EV++ N
Sbjct: 8 PNHTIYINSLNEKIKKDELKKSPYAIFSQFGQILDILVSQSLKMRGQSFVIFKEVSSTIN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFY KPM IQYAK+ SD +AK G+FV R++K+++ + +++ A + S
Sbjct: 68 ALRSMQGFPFYGKPMHIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQEKPAVKKGCSG 127
Query: 128 MANG--TGA-----------------QSNGGTAASFR-----------NANTQETAAPNN 157
+ GA G R A P
Sbjct: 128 WGSAPVVGAVQPVPGMPPMPQAPRVMHHMPGQPPYMRPPGMILPPGLPPGQIPSRAMPPQ 187
Query: 158 ILFIQNLPH--------------------ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAF 197
L +PH ET ML MLF Q+PGFKEVR++ + I F
Sbjct: 188 QLIPGQMPHAQPLSENPPNHILFLTNLPEETNELMLSMLFTQFPGFKEVRLVPGRHDIDF 247
Query: 198 VEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
VEF+++VQ+ A LQGFKIT N M I+FAKK
Sbjct: 248 VEFDNEVQAGAARDVLQGFKITQNNAMKISFAKK 281
>gi|308457664|ref|XP_003091202.1| CRE-RNP-2 protein [Caenorhabditis remanei]
gi|308257956|gb|EFP01909.1| CRE-RNP-2 protein [Caenorhabditis remanei]
Length = 206
Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 138/228 (60%), Gaps = 23/228 (10%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+I PN T+YI NLNEKIK +EL++SL +F Q+G I V+ +T K+RGQA V+F++V+
Sbjct: 2 AEIQPNSTLYINNLNEKIKIDELRKSLVAVFKQFGEIVSVMCFRTLKMRGQAHVIFTDVS 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA 123
+A+ A + FPFY+KPM+IQ+A+ +SD +AKE G++V R+ K E
Sbjct: 62 SAAAAKEALTGFPFYEKPMKIQFAREESDAIAKEKGTYVERQPKYLSE------------ 109
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
+ + + NGG + A PN ILF NLP T+ MLE++F Q+ G
Sbjct: 110 -KIQKKPKSKKRENGG----------EGPAPPNKILFCTNLPDNATAEMLEIMFNQFSGL 158
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
K++RM+ +PGIAFVEF+ D + A L F+I+ ++ M + +AKK
Sbjct: 159 KDIRMVPNRPGIAFVEFDTDSLAIPARTTLNNFRISAEHVMRVDYAKK 206
>gi|219121341|ref|XP_002185896.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|209582745|gb|ACI65366.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 226
Score = 179 bits (455), Expect = 7e-43, Method: Compositional matrix adjust.
Identities = 93/231 (40%), Positives = 148/231 (64%), Gaps = 5/231 (2%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M + + PN T+Y+KNL+ K+KK LKR+LY LF++YG++ +VVAL+ LRGQA+V+F
Sbjct: 1 MASAILQPNNTLYVKNLDWKVKKNLLKRALYALFTRYGKVLEVVALRKDGLRGQAFVIFE 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
+V AA+ A++ +Q FPF+ K + ++YA+ SD +AK DGS+VP+ ++ K KA +
Sbjct: 61 DVQAATAALQALQGFPFFGKDVALEYARETSDRIAKRDGSYVPKARRIK---KALDQNET 117
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
+ ++ + N + + + Q+TA P+ L QNLP + ML MLF+QY
Sbjct: 118 DSSEANKQDNHQAKEESAVAPPEGDMPSPQDTAPPSKYLLAQNLPSDCNEMMLGMLFRQY 177
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G+KEVRM +PG+AF+EFED+ +++A AL GFK+T + + + K+
Sbjct: 178 SGYKEVRM--PRPGLAFIEFEDEPHATLARNALNGFKLTTSESLQLGYGKE 226
>gi|328767502|gb|EGF77551.1| hypothetical protein BATDEDRAFT_13807 [Batrachochytrium
dendrobatidis JAM81]
gi|328767632|gb|EGF77681.1| hypothetical protein BATDEDRAFT_91336 [Batrachochytrium
dendrobatidis JAM81]
gi|328771962|gb|EGF82001.1| hypothetical protein BATDEDRAFT_9954 [Batrachochytrium
dendrobatidis JAM81]
Length = 235
Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 94/226 (41%), Positives = 128/226 (56%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
I QT+YI N+N++I+K+EL+ SLY LFSQ+GR+ D+VALKT K+RGQA+VVF AA
Sbjct: 10 ITVGQTLYINNINDRIRKKELRESLYYLFSQHGRVLDIVALKTMKMRGQAFVVFDTAPAA 69
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
+ A+R++Q FP YDK M+I YAK+KS+ V DGS+ R + E +++
Sbjct: 70 TVAMRELQGFPLYDKNMQIAYAKTKSNAVKNRDGSYSKRSRAAAIEMNGNESDASDDDTL 129
Query: 126 SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE 185
G S N E N ILF+ LP T L LF Q GFKE
Sbjct: 130 HKRQRGDEYDSVTTGRHLKDNEEEMEEDDTNAILFVSQLPSSVTEESLSTLFAQNEGFKE 189
Query: 186 VRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
VR++ +P IAFVE+ Q+ A L G +ITP M + FA++
Sbjct: 190 VRIVPGRPDIAFVEYASSAQADQARMVLNGCQITPDQAMRVEFARR 235
>gi|256083951|ref|XP_002578198.1| small nuclear ribonucleoprotein U)1aU)2b [Schistosoma mansoni]
gi|353232717|emb|CCD80072.1| putative small nuclear ribonucleoprotein U)1a,U)2b [Schistosoma
mansoni]
Length = 226
Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 149/228 (65%), Gaps = 4/228 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN T+Y+ NLN+K+KK +LK++LY +F Q+GR+ D++A+KT K+RGQA++++ ++
Sbjct: 2 DIRPNHTLYVNNLNDKVKKNDLKKALYYIFGQHGRLIDIIAMKTMKMRGQAFIIYQDIAC 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDG-SFVPREKKKKQEEKAERKRRAEEA 123
A+ A R +Q F + +PMR+ YAK S + G S +++++++ EK RK+ A+ A
Sbjct: 62 ATQAYRSLQGFQLFQRPMRVTYAKKDSQQIICLKGVSAEVQKRREEEREKRRRKKMAQRA 121
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
++ A QS G A + + N PN+ILF+ NLP ETT +ML MLF Q+ GF
Sbjct: 122 AAAAAALQAANQSVNGPAGTGGDINAL-LDQPNHILFVSNLPEETTDAMLTMLFSQFSGF 180
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
KE R A G+ FVE++ + Q++ A A +GFK+TP + M ITFAKK
Sbjct: 181 KEAR--RAAGGVGFVEYDTESQAAAARSAYEGFKLTPTHAMQITFAKK 226
>gi|56756134|gb|AAW26245.1| SJCHGC05726 protein [Schistosoma japonicum]
Length = 226
Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust.
Identities = 97/228 (42%), Positives = 150/228 (65%), Gaps = 4/228 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN T+Y+ NLN+K+KK +LK++LY +F Q+GR+ D++A+KT K+RGQA++++ ++
Sbjct: 2 DIRPNHTLYVNNLNDKVKKNDLKKALYYIFGQHGRLIDIIAMKTMKMRGQAFIIYQDIAC 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDG-SFVPREKKKKQEEKAERKRRAEEA 123
A+ A R +Q F + +PMR+ YAK S + G S +++++++ EK +RK+ A+ A
Sbjct: 62 ATQAYRSLQGFQLFQRPMRVTYAKKDSLQIISLKGVSAEVQKRREEEREKRKRKKMAQRA 121
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
++ A QS G A + + N PN+ILF+ NLP ETT +ML MLF Q+ GF
Sbjct: 122 AAAAAALQAANQSVNGPAGTGGDINAL-LDQPNHILFVSNLPEETTDAMLTMLFSQFSGF 180
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
KE R A G+ FVE++ + Q++ A A +GFK+TP + M ITFAKK
Sbjct: 181 KEAR--RAAGGVGFVEYDTESQAAAARSAYEGFKLTPTHAMQITFAKK 226
>gi|320167853|gb|EFW44752.1| SNF [Capsaspora owczarzaki ATCC 30864]
Length = 262
Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust.
Identities = 97/247 (39%), Positives = 151/247 (61%), Gaps = 24/247 (9%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPP+QT+Y+ NLNEK+KKEEL+ +LY +F+Q+G + D+VALKT K+RGQA++VF ++T++
Sbjct: 19 IPPSQTLYVNNLNEKLKKEELRAALYTIFTQFGPVLDIVALKTLKMRGQAFIVFHDITSS 78
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS--------FVPREKKKKQEEKAERK 117
+NA+R +Q F FY KPMRI +AKS+S V + +G F+P+ ++ K E++ ++
Sbjct: 79 ANALRSLQGFSFYGKPMRITFAKSRSYAVGRFNGEPDSHVRRPFIPKNQRPKGEKQPGKR 138
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRN------------ANTQETAAPNNILFIQNLP 165
A SS NG N A+ N +Q P+NILF+QNLP
Sbjct: 139 NPNGAAAASS--NGDAQAMNTEAPAAAGNHAPMLQQQQPGFGFSQAPEIPHNILFVQNLP 196
Query: 166 HETTSSMLEMLFQQY-PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPM 224
T + LF+ Y G +VR++ + IAFVE+E++ ++ A L G+K+ N +
Sbjct: 197 QGITQDDIFNLFRGYTAGSCDVRLVPNRADIAFVEYENEGIAANAKATLHGYKMGDNN-L 255
Query: 225 AITFAKK 231
++TF+KK
Sbjct: 256 SVTFSKK 262
>gi|402220077|gb|EJU00150.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731 SS1]
Length = 276
Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 139/232 (59%), Gaps = 12/232 (5%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PP +T+Y++NLNE + LK++L LF YG + DVVA ++RGQA+V F++ AA+
Sbjct: 50 PPCETVYVQNLNESVTMNTLKQTLTNLFKNYGEVLDVVAHHNLRMRGQAFVSFADPEAAA 109
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVA-KEDGSFVPR------EKKKKQEEKAERKRR 119
AV+++ FP Y KPM++ +AK++SD V K DG+ + E+KK+ +R+
Sbjct: 110 KAVKEVDRFPLYGKPMKLSFAKTRSDAVVQKLDGTHMEEYKAERMERKKRARADNPLRRK 169
Query: 120 AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQ 179
A+ ++S +GT Q+ G + E PN ILF+QNLP TT L+MLF Q
Sbjct: 170 AQARLKASAGDGTAPQA-GRRIVQMPD----EYLPPNKILFLQNLPDSTTLDQLQMLFSQ 224
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
YPG EVR++ K IAFVE+ D+ +S A AL +++ + M +TFA+K
Sbjct: 225 YPGLHEVRLVPTKKDIAFVEYVDENAASTAKDALHNYRLDGEAKMKVTFARK 276
>gi|346473641|gb|AEO36665.1| hypothetical protein [Amblyomma maculatum]
Length = 183
Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 91/183 (49%), Positives = 119/183 (65%), Gaps = 2/183 (1%)
Query: 51 LRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ 110
+RGQA+V F ++ +A+NA+R MQ FPFYDKPMRIQYAKS+SD VAK G++V +K+
Sbjct: 1 MRGQAFVAFKDINSATNALRSMQGFPFYDKPMRIQYAKSESDAVAKLKGTYVESSRKRTP 60
Query: 111 EEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETA--APNNILFIQNLPHET 168
E +++++ + A G A A T PN ILF+ NLP ET
Sbjct: 61 AEGEAAPKKSKKKKTQPQPQPQPAMLMMGGAGIPMVAATGALPEQPPNQILFLTNLPEET 120
Query: 169 TSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228
ML MLF Q+PGFKEVR++ + IAFVEFE+++QSS A +ALQGFKITP + M ITF
Sbjct: 121 NEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENEIQSSAAKEALQGFKITPTHAMKITF 180
Query: 229 AKK 231
AKK
Sbjct: 181 AKK 183
>gi|403411353|emb|CCL98053.1| predicted protein [Fibroporia radiculosa]
Length = 271
Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 91/227 (40%), Positives = 132/227 (58%), Gaps = 4/227 (1%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
++T+YI+NLNEKI+ LK SL LF YG + DVVA ++RGQA+V F AA A
Sbjct: 45 SETLYIQNLNEKIRIPVLKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFDSAEAAKKA 104
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSM 128
+++++ FP Y KPM+I +A+++SD V K+ S E K ++ E + R ++
Sbjct: 105 LKEVRGFPLYSKPMQISFARTRSDAVVKKLDSVHYEEHKARRMEYKKSTRYTNPLKRKYR 164
Query: 129 ANGTGAQSNGGTAASF-RNANTQ---ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
A A+ +G AA + N Q E PN ILF+QNLP + L LF QYP
Sbjct: 165 ARKMAAEMDGAGAAPVSKRPNVQMPDEYLPPNKILFLQNLPESVSKDQLMALFSQYPNLH 224
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR+I K IAFVE+ D+ +++A AL +K+ +N + ITFA+K
Sbjct: 225 EVRLIPTKKDIAFVEYMDEGSATVAKDALHNYKLDGENKIKITFARK 271
Score = 37.4 bits (85), Expect = 4.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN+ ++++NL E + K++ L LFSQY + +V + T K A+V + + +A
Sbjct: 193 LPPNKILFLQNLPESVSKDQ----LMALFSQYPNLHEVRLIPTKK--DIAFVEYMDEGSA 246
Query: 66 SNAVRQMQNF 75
+ A + N+
Sbjct: 247 TVAKDALHNY 256
>gi|392570636|gb|EIW63808.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 281
Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 141/230 (61%), Gaps = 12/230 (5%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
+T+YI+NLNEKIK LK SL LF YG + DVVA ++RGQA+V F++ A A+
Sbjct: 56 ETLYIQNLNEKIKIPVLKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFADADVAKKAL 115
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAK--EDGSFVPREKKKKQEEKAERKRRA--EEAQQ 125
++++ FP Y KPM+I +A+++SD V K ++ +F ++K+ + +KA R ++ +Q
Sbjct: 116 KEVRGFPLYTKPMQISFARTRSDAVVKKLDEDNFDSHKEKRLEHKKATRYTNPIKKKYRQ 175
Query: 126 SSMANGTGAQSNGGTAA-SFRNANTQ---ETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
+A A+ +GG AA + + N Q E PN ILF+QNLP + L LF QYP
Sbjct: 176 KRLA----AEMDGGAAAPAAKRPNVQMPDEYLPPNKILFLQNLPKNVSKDQLMALFAQYP 231
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR+I K IAFVEF D+ +++A AL +K+ +N + ITFA+K
Sbjct: 232 NLHEVRLIPTKKDIAFVEFLDEASATVAKDALHNYKLDGENKIKITFARK 281
>gi|237840841|ref|XP_002369718.1| U2 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|95007435|emb|CAJ20656.1| Rnp (Rrm rna binding domain) containing protein, putative
[Toxoplasma gondii RH]
gi|211967382|gb|EEB02578.1| U2 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
ME49]
gi|221482936|gb|EEE21267.1| u2 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
GT1]
gi|221503274|gb|EEE28972.1| u2 small nuclear ribonucleoprotein, putative [Toxoplasma gondii
VEG]
Length = 233
Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 88/228 (38%), Positives = 133/228 (58%), Gaps = 24/228 (10%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
GD+PPNQT+Y NLN+K+ K++L+ LY FS YG + +VV T +RGQA+VVF+++
Sbjct: 30 GDVPPNQTLYCNNLNDKLHKQDLQACLYEFFSAYGLVLEVVVRGT-NMRGQAFVVFADLG 88
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA 123
+A+ A+R Q F KP+R+QYAK+KSD + K + F PR+ + + A +A
Sbjct: 89 SATAALRAAQGKDFLGKPLRLQYAKTKSDAILKLNDQFKPRKPNAPRNKVDAGAGSATKA 148
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
+ TG S LFI+NLP + T + L++LF QY G
Sbjct: 149 KDGKATGETGQFS----------------------LFIENLPPKATKTSLDILFGQYRGH 186
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
E R+IE + G+AFV+F Q+++AMQ +QGFK+ P +P+ I+ +K
Sbjct: 187 TESRLIEGR-GVAFVDFSTQAQAAVAMQGMQGFKVDPSHPIKISMVEK 233
>gi|170103054|ref|XP_001882742.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164642113|gb|EDR06370.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 243
Score = 166 bits (419), Expect = 9e-39, Method: Compositional matrix adjust.
Identities = 95/227 (41%), Positives = 131/227 (57%), Gaps = 6/227 (2%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
+T+YI+NLNEKIK E LK SL LF YG + DVVA ++RGQA+V F+ A A+
Sbjct: 18 ETLYIQNLNEKIKPEVLKASLRGLFKSYGEVLDVVAHNNLRMRGQAFVSFASPEVAKKAM 77
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKE-DGSFVPREKKKKQEEKAERKRRAEEAQQSSM 128
+++Q FP Y KPM+I +AK++SD V K DG+ K + E K ++ R +
Sbjct: 78 KEVQRFPLYSKPMQISFAKTRSDAVVKRIDGANFDGHKATRDENK-KKTRYTNPVKSKFR 136
Query: 129 ANGTGAQSNGGTA-ASFRNANTQ---ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
A A+ +G A + + N Q E PN ILF+QNLP T L LF QYP
Sbjct: 137 AKRLAAEIDGAAALPAVKRPNVQMPDEYLPPNKILFLQNLPESVTKEQLLGLFSQYPNLY 196
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR+I K IAFVE+ D+ + +A AL FK+ +N + IT+A+K
Sbjct: 197 EVRLIPTKRDIAFVEYMDEGSAGVAKDALHNFKLDGENKIKITYARK 243
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 47/84 (55%), Gaps = 7/84 (8%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN+ ++++NL E + KE+ L LFSQY +++V + P R A+V + + +A
Sbjct: 165 LPPNKILFLQNLPESVTKEQ----LLGLFSQYPNLYEVRLI--PTKRDIAFVEYMDEGSA 218
Query: 66 SNAVRQMQNFPFY-DKPMRIQYAK 88
A + NF + ++I YA+
Sbjct: 219 GVAKDALHNFKLDGENKIKITYAR 242
>gi|358340305|dbj|GAA48228.1| U2 small nuclear ribonucleoprotein B'' [Clonorchis sinensis]
Length = 225
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 96/231 (41%), Positives = 149/231 (64%), Gaps = 11/231 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN T+Y+ NLN+K+KK +L+++LY LF Q+GR+ D++A+KT K+RGQA++++ +V +
Sbjct: 2 DIRPNHTLYVNNLNDKVKKADLRKALYYLFGQHGRLLDIIAMKTMKMRGQAFIIYQDVQS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDG--SFVPREKKKKQEEKAERKRRAEE 122
A+ A+R +Q F + +PMRI YAK S + + G + V + +++++E++ RK
Sbjct: 62 ATTALRSLQGFNLFQRPMRIAYAKRDSTQIVQLKGVSAEVQKRREEEREKRKRRKVAQRL 121
Query: 123 AQQSSMANGTGAQSNG--GTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
A ++ A +NG GT + + PN+ILF+ NLP ETT +ML MLF Q+
Sbjct: 122 AAAAAAAQAATQAANGPAGTGDALNLLDQ-----PNHILFVTNLPEETTDAMLTMLFSQF 176
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
GFKE R A G+ FVE+E Q++ A A +GFK+TP + M I+FAKK
Sbjct: 177 SGFKEAR--RAPGGVWFVEYESAEQAAAARSAYEGFKLTPTHAMQISFAKK 225
>gi|313238053|emb|CBY13172.1| unnamed protein product [Oikopleura dioica]
Length = 203
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 90/226 (39%), Positives = 133/226 (58%), Gaps = 26/226 (11%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D P T+Y+KNLN+KIKK EL R LY +FS YG + D++ K PKLRGQA++ + +++
Sbjct: 3 DGTPCHTLYVKNLNDKIKKIELTRQLYAMFSTYGMVLDIMVSKAPKLRGQAFITYKDISD 62
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+NA+++MQ FPFY+K M I +AK +S + + P++++ +E
Sbjct: 63 AANALKRMQGFPFYEKAMMISFAKRESHVITQAKKYVPPKDERTLAKE------------ 110
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+N AA + A +E P ++++NLP E SML +LF Q+PGFK
Sbjct: 111 -----------TNAKLAAKKKPAGDEEE--PAATIYVENLPDEANESMLNLLFSQFPGFK 157
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
+ R I A G AFVEF D ++ A ALQGFK+TP P+ +T+AK
Sbjct: 158 KSRPIPAG-GKAFVEFADPGAATSAKDALQGFKVTPDRPIKLTYAK 202
>gi|299742799|ref|XP_001832784.2| RNA binding protein [Coprinopsis cinerea okayama7#130]
gi|298405354|gb|EAU89029.2| RNA binding protein [Coprinopsis cinerea okayama7#130]
Length = 257
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 95/226 (42%), Positives = 129/226 (57%), Gaps = 4/226 (1%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
+T+YI+NLNEKIK E LK +L LF YG + DVVA ++RGQA+V F A A+
Sbjct: 32 ETLYIQNLNEKIKPEVLKTTLRGLFKTYGPVLDVVAHSNLRMRGQAFVSFESADIAEKAM 91
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS--FVPREKKKKQEEKAERKRRAEEAQQSS 127
R++Q FP Y KPM+I +AK++SD V K+ + F + ++++ +KA R +A+ +
Sbjct: 92 REVQRFPLYSKPMQISFAKTRSDAVVKQKDAENFDSHKARREEHKKATRYTNPVKAKFKA 151
Query: 128 MANGTGAQSNGGTAASFRNA--NTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE 185
A+ R A E PN ILF+QNLP T L LF QYP E
Sbjct: 152 KRLAADVDGGAAAPAAKRQAIQMPDEYLPPNKILFVQNLPESVTKDQLTTLFSQYPNLYE 211
Query: 186 VRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
VR+I K IAFVEF D+ S +A AL FKI +N + ITFA+K
Sbjct: 212 VRLIPTKKDIAFVEFLDEASSGVAKDALHNFKIDGENKIKITFARK 257
Score = 39.7 bits (91), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN+ ++++NL E + K++L LFSQY +++V + P + A+V F + ++
Sbjct: 179 LPPNKILFVQNLPESVTKDQLT----TLFSQYPNLYEVRLI--PTKKDIAFVEFLDEASS 232
Query: 66 SNAVRQMQNF 75
A + NF
Sbjct: 233 GVAKDALHNF 242
>gi|392597982|gb|EIW87304.1| RNA binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 263
Score = 165 bits (418), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 130/228 (57%), Gaps = 6/228 (2%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
++T+YI+NLNEKIK + +K+SL LF YG + DVVA ++RGQA+V F A A
Sbjct: 37 SETLYIQNLNEKIKVDVIKQSLRSLFKTYGEVLDVVAHSNLRMRGQAFVSFESPEVAKKA 96
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKE-DGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
+ +++ FP Y+KPM+I +A+S+SD V K+ D K ++ E K + R +Q
Sbjct: 97 MEEVRGFPLYNKPMQISFARSRSDAVVKKLDAEHFDAHKAQRDEHK-KNTRYTNPLKQKL 155
Query: 128 MANGTGAQSNGGTAA-SFRNANTQ---ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
A +G AA + + N Q E PN ILF+QNLP L LF QYP
Sbjct: 156 RAKRMATDIDGAAAAPAVKRPNVQMPDEYLPPNKILFLQNLPENVDKEQLTTLFTQYPNL 215
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR+I K IAFVEF D+ + +A AL +K+ +N + ITFA+K
Sbjct: 216 HEVRLIPTKKDIAFVEFVDEASAGVAKDALHNYKLDGENKIKITFARK 263
Score = 38.5 bits (88), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 39/70 (55%), Gaps = 6/70 (8%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN+ ++++NL E + KE+L LF+QY + +V + T K A+V F + +A
Sbjct: 185 LPPNKILFLQNLPENVDKEQLT----TLFTQYPNLHEVRLIPTKK--DIAFVEFVDEASA 238
Query: 66 SNAVRQMQNF 75
A + N+
Sbjct: 239 GVAKDALHNY 248
>gi|389742376|gb|EIM83563.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 274
Score = 165 bits (417), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 93/233 (39%), Positives = 138/233 (59%), Gaps = 16/233 (6%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
++T+YI+NLNEKI+ E LK SL LF YG + DVVA ++RGQA+V F A+ A
Sbjct: 48 SETLYIQNLNEKIRIEVLKNSLRGLFKSYGEVLDVVAHNNLRMRGQAFVSFESPEIAAKA 107
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKE-DGSFVPREKKKKQEEKAER------KRRAE 121
+++++ FP Y KPM+I +A+++SD V K+ D + + K+ + + K E KR+
Sbjct: 108 LKEVKGFPLYSKPMQISFARTRSDAVVKKLDATNFDQHKEHRLQHKKETRYTNPIKRKFR 167
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQ---ETAAPNNILFIQNLPHETTSSMLEMLFQ 178
E + +S +G +A + + N Q E PN ILF+QNLP T LE LF
Sbjct: 168 EKRVASEMDG------ATSAPAPKRPNVQMPDEYLPPNKILFLQNLPESVTKPQLEALFT 221
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QYP EVR+I K IAFVE+ D+ +++A AL +K+ +N + ITFA+K
Sbjct: 222 QYPNLHEVRLIPTKKDIAFVEYVDEGSATVAKDALHNYKLDGENKIKITFARK 274
>gi|344255667|gb|EGW11771.1| U2 small nuclear ribonucleoprotein B'' [Cricetulus griseus]
Length = 180
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 89/191 (46%), Positives = 122/191 (63%), Gaps = 21/191 (10%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V+F E+ +++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F
Sbjct: 2 KMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF-------- 53
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPN---------NILF 160
A+++++ E+ + +M A + + +ANTQ AAPN ILF
Sbjct: 54 ----ADKEKKKEKKKAKTMEQAAAAANKKPGQGTPNSANTQGNAAPNPQVPDYPPNYILF 109
Query: 161 IQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITP 220
+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEFE+D Q+ A ALQGFKITP
Sbjct: 110 LNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITP 169
Query: 221 QNPMAITFAKK 231
+ M IT+AKK
Sbjct: 170 SHAMKITYAKK 180
>gi|118396628|ref|XP_001030652.1| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila]
gi|89284963|gb|EAR82989.1| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila
SB210]
Length = 270
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/223 (39%), Positives = 139/223 (62%), Gaps = 4/223 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P +T+YI NLN+KI +E++K LY LF Q+G I D++ K+ LRGQAW++F ++TAA+N
Sbjct: 51 PKETLYINNLNDKINQEDMKYGLYFLFQQFGEILDIILKKSNTLRGQAWIIFKDITAATN 110
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A + + F F+DK ++I +AK +S+ + K +G +VP++K+KK+ +K +E
Sbjct: 111 AKKNLNGFLFFDKELKINFAKQRSEILDKLEGRWVPKKKQKKENNNNAKKVGEQEIGTEQ 170
Query: 128 MANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVR 187
Q N E PNN+L +++LP T+ +L+ LF QYPGFKEVR
Sbjct: 171 KEQQQQKQQLQQIPL---NIQQNELNQPNNVLILEDLPSFVTTDILKALFGQYPGFKEVR 227
Query: 188 MIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
+I A +AFVEF + ++++A+ LQ F++TPQ + + +AK
Sbjct: 228 LI-APRKVAFVEFSQEDEATVALNGLQNFQLTPQVFLKLNYAK 269
>gi|401396957|ref|XP_003879947.1| hypothetical protein NCLIV_003960 [Neospora caninum Liverpool]
gi|325114355|emb|CBZ49912.1| hypothetical protein NCLIV_003960 [Neospora caninum Liverpool]
Length = 234
Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 87/228 (38%), Positives = 133/228 (58%), Gaps = 23/228 (10%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
GD+PPNQT+Y NLN+K+ K++L+ LY FS YG + +VV T +RGQA+VVF++++
Sbjct: 30 GDVPPNQTLYCNNLNDKLHKQDLQACLYEFFSAYGLVLEVVVRGT-NMRGQAFVVFADLS 88
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA 123
+A+ A+R Q F KP+R+QYAK+KSD V K + + PR+ + + A
Sbjct: 89 SATAALRAAQGKDFLGKPLRVQYAKTKSDAVLKLNDQYKPRKPNVPRTKVDAGAGAAATK 148
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
+ A G Q + LFI+NLP + T + L++LF QY G
Sbjct: 149 AKDGKATGETGQFS---------------------LFIENLPPKATKTSLDILFGQYRGH 187
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
E R+IE + G+AFV+F Q+++AMQ +QGFK+ P +P+ I+ +K
Sbjct: 188 TESRLIEGR-GVAFVDFSTQAQAAVAMQGMQGFKVDPSHPIKISMVEK 234
>gi|409052167|gb|EKM61643.1| hypothetical protein PHACADRAFT_248371 [Phanerochaete carnosa
HHB-10118-sp]
Length = 267
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 94/230 (40%), Positives = 134/230 (58%), Gaps = 12/230 (5%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
+T+YI+NLNEKIK LK SL LF YG + DVVA ++RGQA+V F A A+
Sbjct: 42 ETLYIQNLNEKIKVPVLKASLRGLFKSYGEVLDVVAHSNLRMRGQAFVSFENAEVAKKAL 101
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAK--EDGSFVPREKKKKQEEKAERKRRAEEAQ--Q 125
++++ FP Y KPM+I YA+++SD V K E + +++K+ +KA R +A+ Q
Sbjct: 102 KEVRGFPLYSKPMQISYARTRSDAVVKKLEPATLDAHLERRKEHKKATRYTNPIKAKFRQ 161
Query: 126 SSMANGTGAQSNGGTAASF-RNANT---QETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
+A A+ +G +A R N E PN ILF+QNLP T L LF QYP
Sbjct: 162 KRLA----AEMDGASAVPVSRRPNVMMPDEYLPPNKILFLQNLPENVTKDQLMALFSQYP 217
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR+I K IAFVE+ D+ +++A AL +K+ +N + ITFA+K
Sbjct: 218 NLYEVRLIPTKKDIAFVEYLDEASATVAKDALHNYKLDGENKIKITFARK 267
Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN+ ++++NL E + K++ L LFSQY +++V + T K A+V + + +A
Sbjct: 189 LPPNKILFLQNLPENVTKDQ----LMALFSQYPNLYEVRLIPTKK--DIAFVEYLDEASA 242
Query: 66 SNAVRQMQNF 75
+ A + N+
Sbjct: 243 TVAKDALHNY 252
>gi|409084026|gb|EKM84383.1| hypothetical protein AGABI1DRAFT_110905 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 292
Score = 164 bits (415), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 132/228 (57%), Gaps = 4/228 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P +T+YI+NLNEK+K + L+ +L LF YG + DVVA ++RGQA+V F V +A
Sbjct: 65 PCETLYIQNLNEKVKPQVLQATLRGLFKSYGDVLDVVAHGNMRMRGQAFVSFDSVDSARK 124
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A++ +Q FP Y KPM+I +AK++SD V K+ + + K++++E + R +
Sbjct: 125 AMKDVQRFPLYSKPMQITFAKTRSDAVVKKLDAESYDQHKQRRDEHKKATRYTNPIKSKF 184
Query: 128 MANGTGAQSNGGTAA--SFRNA--NTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
A+ +GG A S R A E PN ILF+QNLP T L LF QYP
Sbjct: 185 RLKRMAAEMDGGAALPQSKRPAVQMPDEYLPPNKILFLQNLPESVTKDQLMSLFSQYPNL 244
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVRMI K IAFVE+ D+ + +A AL +K+ +N + ITFA+K
Sbjct: 245 YEVRMIPTKKDIAFVEYVDEGSAGVAKDALHNYKLDGENKIKITFARK 292
Score = 38.1 bits (87), Expect = 3.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN+ ++++NL E + K++ L LFSQY +++V + T K A+V + + +A
Sbjct: 214 LPPNKILFLQNLPESVTKDQ----LMSLFSQYPNLYEVRMIPTKK--DIAFVEYVDEGSA 267
Query: 66 SNAVRQMQNF 75
A + N+
Sbjct: 268 GVAKDALHNY 277
>gi|426200920|gb|EKV50843.1| hypothetical protein AGABI2DRAFT_189187 [Agaricus bisporus var.
bisporus H97]
Length = 292
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 92/228 (40%), Positives = 132/228 (57%), Gaps = 4/228 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P +T+YI+NLNEK+K + L+ +L LF YG + DVVA ++RGQA+V F V +A
Sbjct: 65 PCETLYIQNLNEKVKPQVLQATLRGLFKSYGDVLDVVAHGNMRMRGQAFVSFDSVDSARK 124
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A++ +Q FP Y KPM+I +AK++SD V K+ + + K++++E + R +
Sbjct: 125 AMKDVQRFPLYSKPMQITFAKTRSDAVVKKLDAESYDQHKQRRDEHKKATRYTNPIKSKF 184
Query: 128 MANGTGAQSNGGTAA--SFRNA--NTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
A+ +GG A S R A E PN ILF+QNLP T L LF QYP
Sbjct: 185 RLKRMAAEMDGGAALPQSKRPAVQMPDEYLPPNKILFLQNLPESVTKDQLMSLFSQYPNL 244
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVRMI K IAFVE+ D+ + +A AL +K+ +N + ITFA+K
Sbjct: 245 YEVRMIPTKKDIAFVEYVDEGSAGVAKDALHNYKLDGENKIKITFARK 292
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN+ ++++NL E + K++ L LFSQY +++V + T K A+V + + +A
Sbjct: 214 LPPNKILFLQNLPESVTKDQ----LMSLFSQYPNLYEVRMIPTKK--DIAFVEYVDEGSA 267
Query: 66 SNAVRQMQNF 75
A + N+
Sbjct: 268 GVAKDALHNY 277
>gi|308800402|ref|XP_003074982.1| U2snrB small nuclear ribonucleoprotein U2B, putative (IC)
[Ostreococcus tauri]
gi|119358847|emb|CAL52253.2| U2snrB small nuclear ribonucleoprotein U2B, putative (IC)
[Ostreococcus tauri]
Length = 221
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 81/221 (36%), Positives = 130/221 (58%), Gaps = 10/221 (4%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
+ T+Y+ NL+EKI K+EL+ +LY +FS +G+I D+VA +T +LRGQAW+V+ + A A
Sbjct: 9 SHTLYVNNLSEKISKQELRMALYSVFSSFGKILDIVAARTYRLRGQAWIVYDTMDEAQRA 68
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSM 128
+QNFPFYDKP++I +A SD + + +G + R + +AE + R E +++ M
Sbjct: 69 FEGLQNFPFYDKPLKIAFANLSSDVILRREGEQISRVASARVVRRAENQER-ERMRRTMM 127
Query: 129 ANGTGAQSNGGTAASFRNANTQETAAP-NNILFIQNLPHETTSSMLEMLFQQYPGFKEVR 187
A + G A+ +A+ + +Q LP TT+ ML +LFQQ+ GFK
Sbjct: 128 AGVLLSHEEG--------ADCDVSASKERKCILVQGLPAATTTHMLTLLFQQFLGFKSAN 179
Query: 188 MIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228
M + GI VEF+ Q+S A+ LQGF++ + + ++F
Sbjct: 180 MSAKEIGIGQVEFDTPAQASAALNGLQGFRLNAAHSIVLSF 220
>gi|336365379|gb|EGN93730.1| hypothetical protein SERLA73DRAFT_189480 [Serpula lacrymans var.
lacrymans S7.3]
gi|336377939|gb|EGO19099.1| hypothetical protein SERLADRAFT_480314 [Serpula lacrymans var.
lacrymans S7.9]
Length = 262
Score = 164 bits (414), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 93/228 (40%), Positives = 134/228 (58%), Gaps = 6/228 (2%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
++T+YI+NLNEKIK + LK SL LF YG + DVVA ++RGQA+V F A A
Sbjct: 36 SETLYIQNLNEKIKIDVLKASLRGLFKSYGEVLDVVAHGNLRMRGQAFVSFDSAEVAKKA 95
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKE-DGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
+++++ FP Y KPM+I +A+++SD V K +G + K ++ E K + R + +Q
Sbjct: 96 MKEVRGFPLYSKPMQISFARTRSDAVVKRLEGETFEQHKARRAEHK-KNTRYSNPLKQKF 154
Query: 128 MANGTGAQSNGGTAA-SFRNANTQ---ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
A A+ +G TA + + N Q E PN ILF+QNLP T L LF QYP
Sbjct: 155 RAKRMAAEMDGVTAVPAPKRPNVQMPDEYLPPNKILFLQNLPENVTKDQLMALFSQYPNL 214
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR+I K IAFVE+ D+ + +A AL +K+ +N + ITFA+K
Sbjct: 215 YEVRLIPTKKDIAFVEYIDEGSAGVAKDALHNYKLDGENKIKITFARK 262
Score = 37.7 bits (86), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN+ ++++NL E + K++ L LFSQY +++V + T K A+V + + +A
Sbjct: 184 LPPNKILFLQNLPENVTKDQ----LMALFSQYPNLYEVRLIPTKK--DIAFVEYIDEGSA 237
Query: 66 SNAVRQMQNF 75
A + N+
Sbjct: 238 GVAKDALHNY 247
>gi|195554301|ref|XP_002076873.1| GD24751 [Drosophila simulans]
gi|194202891|gb|EDX16467.1| GD24751 [Drosophila simulans]
Length = 169
Score = 162 bits (411), Expect = 8e-38, Method: Compositional matrix adjust.
Identities = 88/181 (48%), Positives = 115/181 (63%), Gaps = 12/181 (6%)
Query: 51 LRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ 110
+RGQA+V+F E+ +ASNA+R MQ FPFYDKPM+I Y+KS SD VAK G+F ++ K+
Sbjct: 1 MRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFK---ERPKK 57
Query: 111 EEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTS 170
+ + +E + + SN NTQ PN ILF+ NLP ET
Sbjct: 58 IKPPKPAPGTDEKKDKKKKPSSAENSN---------PNTQTEQPPNQILFLTNLPEETNE 108
Query: 171 SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
ML MLF Q+PGFKEVR++ + IAFVEF ++QS+ A +ALQGFKITP + M ITFAK
Sbjct: 109 MMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAK 168
Query: 231 K 231
K
Sbjct: 169 K 169
>gi|449541608|gb|EMD32591.1| hypothetical protein CERSUDRAFT_118631 [Ceriporiopsis subvermispora
B]
Length = 272
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 136/233 (58%), Gaps = 16/233 (6%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
++T+YI+NLNEKIK LK+SL LF YG + DVVA ++RGQA+V F +A A
Sbjct: 46 SETLYIQNLNEKIKIPVLKQSLRSLFKTYGEVLDVVAHSNLRMRGQAFVSFDSAESAQKA 105
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKE-DGSFVPREKKKKQEEKAER------KRRAE 121
+++++ FP Y KPM+I +A+S+SD V K D + K ++ E+K + KR+
Sbjct: 106 LKEVRGFPLYSKPMQISFARSRSDAVVKRLDANNYDAHKARRMEQKKQTRYTNPLKRKFR 165
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQ---ETAAPNNILFIQNLPHETTSSMLEMLFQ 178
+ + ++ +G GA + N Q E PN ILF+QNLP + L LF
Sbjct: 166 QRRLAAEVDGAGA------VPVSKRPNVQMPDEYLPPNKILFLQNLPESVSKDQLMALFS 219
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QYP EVR+I K IAFVE+ D+ +++A +AL +K+ +N + ITFA+K
Sbjct: 220 QYPNLHEVRLIPTKKDIAFVEYLDEGSATVAKEALHNYKLDGENKIKITFARK 272
Score = 37.4 bits (85), Expect = 5.0, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 6/70 (8%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN+ ++++NL E + K++ L LFSQY + +V + T K A+V + + +A
Sbjct: 194 LPPNKILFLQNLPESVSKDQ----LMALFSQYPNLHEVRLIPTKK--DIAFVEYLDEGSA 247
Query: 66 SNAVRQMQNF 75
+ A + N+
Sbjct: 248 TVAKEALHNY 257
>gi|430811247|emb|CCJ31263.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 367
Score = 162 bits (410), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 83/214 (38%), Positives = 131/214 (61%), Gaps = 3/214 (1%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PP++TIYI+NL+EK+K + LK+SL +FS YG I D++A K ++RGQA+VVF + +A
Sbjct: 25 LPPSETIYIRNLSEKVKIDILKKSLEAVFSSYGTILDIIAHKNIRMRGQAFVVFDSIDSA 84
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ- 124
A+ +Q F +DKPM +QY+K+KSD K G+ E+ KK+ + E+K + + Q
Sbjct: 85 QKAIADVQAFTLFDKPMVLQYSKTKSDATVKRLGTHEEFEEHKKR--RLEKKEQLKSTQP 142
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
++ N + + N +N E P+ ILF+Q LP T+ +L +F ++ GFK
Sbjct: 143 KTKQINASTTKKNTSKKTQKQNTIPDEHLPPHKILFLQKLPENITAEVLSAVFNRFSGFK 202
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
EVRM+ +PGIAFVE+E + + +A G +
Sbjct: 203 EVRMVPGRPGIAFVEYETNDDAVIAKHGTVGMAL 236
>gi|302673457|ref|XP_003026415.1| hypothetical protein SCHCODRAFT_35516 [Schizophyllum commune H4-8]
gi|300100097|gb|EFI91512.1| hypothetical protein SCHCODRAFT_35516, partial [Schizophyllum
commune H4-8]
Length = 230
Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 85/221 (38%), Positives = 128/221 (57%), Gaps = 4/221 (1%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
+T+YI+NLNEKIK + +K++L LF YG + DVVA + ++RGQA+V F++V +A A
Sbjct: 10 ETLYIQNLNEKIKVDIMKQTLRTLFKTYGEVLDVVAHRNLRMRGQAFVSFADVNSARRAA 69
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMA 129
R+++ FP Y KPM+I +A+++SD V K+ + KK++EE + R +Q A
Sbjct: 70 REVRGFPLYTKPMQISFARTRSDAVVKKLDESQFDDHKKRREEHKRKTRYTNPLKQKLKA 129
Query: 130 NGTGAQSNG-GTAASFRNANT---QETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE 185
S+G + R N E PN ILF+QNLP + L LF QYP E
Sbjct: 130 KRLALASDGVSHLPATRRPNVLMPDEYLPPNKILFLQNLPETVSKDQLTALFSQYPNLHE 189
Query: 186 VRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226
VRM+ K IAFVE+ D+ ++ A AL +K+ +N + +
Sbjct: 190 VRMVPTKKDIAFVEYYDEASATNAKDALHNYKMDGENKIKV 230
Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN+ ++++NL E + K++L LFSQY + +V + T K A+V + + +A
Sbjct: 157 LPPNKILFLQNLPETVSKDQLT----ALFSQYPNLHEVRMVPTKK--DIAFVEYYDEASA 210
Query: 66 SNAVRQMQNF 75
+NA + N+
Sbjct: 211 TNAKDALHNY 220
>gi|388583280|gb|EIM23582.1| RNA-binding domain-containing protein [Wallemia sebi CBS 633.66]
Length = 263
Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 90/230 (39%), Positives = 138/230 (60%), Gaps = 16/230 (6%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N+TIY++NLNE +K +K SL L+S +G + DVVA K ++RGQA++ F+ A A
Sbjct: 43 NETIYVRNLNETVKLATMKESLRNLYSNFGEVLDVVAHKNIRMRGQAFIAFNNKHVAKRA 102
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSM 128
+ QNFP Y +P+++ +AK +D V + R+K+ ++ EK ++R+ EA++ M
Sbjct: 103 LTDTQNFPLYGQPLKVDFAKCNADAVFR-------RQKRTEELEKHLQQRK--EAKRGLM 153
Query: 129 AN-----GTGAQSNGGTAASFRNANT--QETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
+ G A+ + GT A+ + E PN ILFIQNLP T+ LE +F QYP
Sbjct: 154 KSNRVKAGQPAERDEGTKAAQQKQQQMPDEYLPPNVILFIQNLPSGTSKEKLEEIFGQYP 213
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR+I A+P IAFVE+ D+ SS+A AL ++I P+ +TFA++
Sbjct: 214 NLAEVRVIPARPDIAFVEYMDESSSSVAKDALNNYQIESDKPIKVTFARQ 263
>gi|401887165|gb|EJT51169.1| RNA binding protein [Trichosporon asahii var. asahii CBS 2479]
Length = 269
Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust.
Identities = 92/234 (39%), Positives = 136/234 (58%), Gaps = 8/234 (3%)
Query: 6 IPPN--QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PPN +T+Y+ NLNEK++ +K +L LF Y + +VA + ++RGQA+V F +
Sbjct: 36 LPPNASETLYLHNLNEKVRIPIMKETLASLFKPYHPLGPIVAHRNVRMRGQAFVSFRDKA 95
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCV-AKEDG--SFVPREKKKKQEEKAERKR-- 118
A+ A R + FP Y KP+ I +AK++SD V K+DG + +K++ ++K +RK
Sbjct: 96 TAALAQRDVNEFPLYGKPIIIDFAKTRSDAVIEKQDGEEALEAWKKERLADKKTKRKTNV 155
Query: 119 -RAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
RA + + T A S G A + E PNN+LF+QNLP TT L +F
Sbjct: 156 IRARNIAKHKAGDDTSAPSGPGAAKKPKLQMPDEYLPPNNVLFVQNLPEGTTQDDLREVF 215
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+QYPG E+R I AK IAFVE+ D+ S++A AL FKI + M +TFA+K
Sbjct: 216 EQYPGLVEIRTIAAKKDIAFVEYADETASAVAKDALHNFKIDGETKMKVTFARK 269
>gi|19113216|ref|NP_596424.1| U1 snRNP-associated protein Usp102 [Schizosaccharomyces pombe
972h-]
gi|74676131|sp|O74968.1|RU1A_SCHPO RecName: Full=U1 small nuclear ribonucleoprotein usp102; Short=U1
snRNP protein usp102
gi|3169094|emb|CAA19287.1| U1 snRNP-associated protein Usp102 [Schizosaccharomyces pombe]
Length = 249
Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 135/231 (58%), Gaps = 14/231 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P++T+YI+N+ EKI+ LKR L LF YG++ DV A KT ++RGQA+VVF + AS
Sbjct: 24 PSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASR 83
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A++ +Q +P Y KPM IQY+KSKSD + + + P E + + K +RK R E +++S
Sbjct: 84 ALKDLQGYPLYGKPMMIQYSKSKSDIIVQRES---PEEIETR---KKDRKNRREMLKRTS 137
Query: 128 MANGTGAQSNGGTAASFRNANTQETAA-------PNNILFIQNLPHETTSSMLEMLFQQY 180
+ RN + + PN +L +QN+P E + +L +F+ +
Sbjct: 138 ALQPAAPKPTHKKPVPKRNVGAERKSTINEDLLPPNKVLLLQNIPQEVNADVLTQIFEAF 197
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
GF+EVRM+ + GIAFVE++ D ++++A G ++ N + +TFA+K
Sbjct: 198 SGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLS-GNQIKVTFARK 247
>gi|353234729|emb|CCA66751.1| related to small nuclear ribonucleoprotein snRNP U1A
[Piriformospora indica DSM 11827]
Length = 274
Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 84/229 (36%), Positives = 133/229 (58%), Gaps = 6/229 (2%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
++T+YI+NLN+++K +K +L LF YG++ DVVA + ++RGQA+V F+ V A A
Sbjct: 46 SETLYIQNLNDQVKLSYMKTTLTNLFRHYGKVLDVVAHRNVRMRGQAFVSFAHVDLARKA 105
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKE------DGSFVPREKKKKQEEKAERKRRAEE 122
++++Q FP Y KPM++ YAK++S+ V K D R K+KK+ RR
Sbjct: 106 LKEVQKFPLYGKPMQVSYAKTRSEAVVKTLSPEEFDEFHALRLKRKKRSRWDNPVRRKLR 165
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
++ ++A G ++ TA E PN ILF+QNLP + T L +F ++
Sbjct: 166 LKKEALATGAQPEAPAPTAKRPVVLMPDEYLPPNQILFVQNLPPDITKDALVAMFSRFEN 225
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F EVRMI K IAFVE+ D+ +++A AL FK+ + + +T+A+K
Sbjct: 226 FYEVRMIPTKKDIAFVEYADEASATVAKDALHNFKLDGEAKIKVTYARK 274
>gi|392568273|gb|EIW61447.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 260
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 96/254 (37%), Positives = 139/254 (54%), Gaps = 33/254 (12%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN T+YIKNLN+K+KKEEL+ LY LF+ YGRI DVVALK PK++GQA++VFS++ A+
Sbjct: 6 PNTTLYIKNLNDKVKKEELRAQLYALFTTYGRILDVVALKGPKMKGQAFLVFSDLAGATA 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS-DCVAKEDGSFVP--------------------REK 106
A+R + FYDKPM I+YAK+KS + +ED +FVP R++
Sbjct: 66 ALRGCEGTVFYDKPMHIEYAKTKSYATLRREDPNFVPPTSIHVKNAPNARGLNGAEKRQR 125
Query: 107 KKKQEEKA-ERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAA---PNNILFIQ 162
+ +E A E KR + + G A AN Q AA P+ L
Sbjct: 126 DDRMDEDARESKREKTDNSDDDGEEMEIEDDDEGAAKQAAPANGQIPAAVQQPSARLMCI 185
Query: 163 NLPHETTSSMLEMLFQQYPGFKEVRMIEA--------KPGIAFVEFEDDVQSSMAMQALQ 214
+LP E T +L +LFQQY GF V+++ + K +A+V FE +++A AL
Sbjct: 186 HLPQEVTDDVLSVLFQQYQGFHSVQVVPSPTPNAAGQKAKMAYVTFESPDLATVAKDALD 245
Query: 215 GFKITPQNPMAITF 228
GF + M++++
Sbjct: 246 GFTLKKGWVMSVSY 259
>gi|68066442|ref|XP_675204.1| small nuclear ribonucleoprotein [Plasmodium berghei strain ANKA]
gi|56494251|emb|CAH97133.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
berghei]
Length = 192
Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 86/229 (37%), Positives = 122/229 (53%), Gaps = 38/229 (16%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M DIPPNQT+Y+ NL EKI +LK LY F YG + DVV K+ KLRGQA+V+FS
Sbjct: 1 MDNFDIPPNQTLYVNNLEEKINVNDLKYLLYEFFCPYGNVLDVVIKKSNKLRGQAFVIFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
+ +++ A + ++ PF +K + I YAK+KS + K DG++ P
Sbjct: 61 NIASSTLAYKNLKGKPFLNKNININYAKTKSKIIEKLDGTYNP----------------- 103
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
+++ AN E LF+QNLP E + LE+LF QY
Sbjct: 104 --------------------IKNYKPANNYENNINQFTLFVQNLPDEINKNALEILFNQY 143
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
PGF EVR I + +AF++F +AM LQ FKITP++PM I+++
Sbjct: 144 PGFSEVRYIPGR-NVAFIDFNSYQNGEVAMNGLQSFKITPEHPMKISWS 191
>gi|331218892|ref|XP_003322123.1| hypothetical protein PGTG_03660 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309301113|gb|EFP77704.1| hypothetical protein PGTG_03660 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 311
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 100/310 (32%), Positives = 150/310 (48%), Gaps = 88/310 (28%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
+G P+ T+YI+NL++K+KK +LKR LY LF +G++ DVV +K K+RGQA+VVF +
Sbjct: 8 SGSSQPSPTLYIQNLDDKVKKSDLKRLLYQLFLIHGKVLDVV-VKKGKMRGQAFVVFRDF 66
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKED------------------------ 98
A+ A+RQ+ F D+ ++I YAK++S +++
Sbjct: 67 QGATQAMRQLDGTGFLDRELKITYAKTQSHATIRQNAGDEVLYHVKLGLKDPNTLQDKNS 126
Query: 99 ---------GSFVPREKKKKQEEKAERKR----------RAEEAQQSSMANGTGAQSNGG 139
G+ +KKK EE A +KR +E S+MA+GT Q
Sbjct: 127 KLTGKMTVSGAQAANMEKKKAEEIATKKRLQGSTSDSEHDDDEQDDSAMADGTNNQ---- 182
Query: 140 TAASFRNANTQETAA--------------------------------------PNNILFI 161
AS R+ T TA PN +LF+
Sbjct: 183 --ASKRSKTTHATADDDDEEAMEEDSDSEQPVDSAAAAAVKAAGSAPILSGEDPNPVLFL 240
Query: 162 QNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ 221
+ LP E T M+ +LFQQYPGF+ VR++ + GIAFV+++ QS MA AL GFK+ P
Sbjct: 241 EGLPAEVTDDMMAVLFQQYPGFQSVRLVPGRTGIAFVQYDTAAQSDMAKAALDGFKLAPG 300
Query: 222 NPMAITFAKK 231
M ++FA++
Sbjct: 301 VVMKVSFARR 310
>gi|146183888|ref|XP_001027266.2| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila]
gi|146143436|gb|EAS07024.2| U1 small nuclear ribonucleoprotein A [Tetrahymena thermophila
SB210]
Length = 247
Score = 158 bits (400), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 80/220 (36%), Positives = 134/220 (60%), Gaps = 5/220 (2%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN TIYI NLNE+I ++LK+ L+ LFS+YG I ++ A K ++RGQA+VVF ++ A
Sbjct: 28 LPPNNTIYINNLNERISIDDLKQELFKLFSEYGSILEIKAKKNIRMRGQAFVVFEQIACA 87
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
A+ + FY K + + +AK+KSD + K +G++ PR+ K +R++ + Q+
Sbjct: 88 QKAIEALNRKNFYGKALHLNFAKTKSDAILKREGAYAPRQPKIFNAADFIEERQSNKKQK 147
Query: 126 SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE 185
++ N A + +N Q P++ LF++NLP + + +++ F +PGFKE
Sbjct: 148 ENLKNKESATAKLAAQPLVQNTIIQ----PHHTLFLENLPINSNTEVIKAFFATFPGFKE 203
Query: 186 VRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225
VR++ K +AFVE+ED+ +++ A+ +LQ FKI Q A
Sbjct: 204 VRLVPQK-RVAFVEYEDENKATAALASLQSFKIGDQTVTA 242
>gi|334312138|ref|XP_003339722.1| PREDICTED: u2 small nuclear ribonucleoprotein B''-like [Monodelphis
domestica]
Length = 180
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 88/191 (46%), Positives = 120/191 (62%), Gaps = 21/191 (10%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V+F E+ +++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F
Sbjct: 2 KMRGQAFVIFKELGSSTNALRQLQGFPFYGKPMRIQYAKTDSDVISKMRGTF-------- 53
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAA---------PNNILF 160
A+++++ E+ + S+ A + A+ +ANTQ + PN ILF
Sbjct: 54 ----ADKEKKKEKKKAKSLEQTANAANKKPGQATPNSANTQGNSTQNPQVPDYPPNYILF 109
Query: 161 IQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITP 220
+ NLP ET ML MLF QYP FKEVR+ + IAFVEFE+D Q+ A ALQGFKITP
Sbjct: 110 LNNLPEETNEMMLSMLFNQYPVFKEVRLGPGRHDIAFVEFENDGQAGAARDALQGFKITP 169
Query: 221 QNPMAITFAKK 231
+ M IT+AKK
Sbjct: 170 SHAMKITYAKK 180
>gi|403373310|gb|EJY86574.1| RNA-binding proteins (RRM domain) [Oxytricha trifallax]
Length = 303
Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 96/248 (38%), Positives = 147/248 (59%), Gaps = 32/248 (12%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPN T+Y++NLNE++K +LK +LY LFS YG + +V A K K+RGQA+VV + AA
Sbjct: 65 PPNPTLYVQNLNERVKAADLKNALYQLFSNYGEVIEVHAKKNIKMRGQAFVVCQDEEAAD 124
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF-----VPREKKKKQEEKAER----- 116
+A++ ++ + F+ KP+R+ YAK++SD AK G+F RE +++ E K +
Sbjct: 125 SAIQALRGYMFFGKPLRLNYAKTRSDVTAKMRGTFDEEVKAKRELRRQHELKQRQLKQKR 184
Query: 117 -------KRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
K R++ + ++ G Q G + N QE+ NN+LFI+ L T
Sbjct: 185 KIIDKFLKLRSDNEEMQNLRGGPSIQKIAGFS-----VNGQES---NNLLFIEGLSKRTP 236
Query: 170 SSMLEMLFQQ--YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNP---- 223
+S+L +F Q GFKEVR I A+ +AFVE+EDD +S+AM ALQG++I N
Sbjct: 237 TSILNEIFSQAVIGGFKEVRHI-AEKEVAFVEYEDDHVASIAMNALQGYQIKESNGETTV 295
Query: 224 MAITFAKK 231
++I+FAK+
Sbjct: 296 LSISFAKR 303
>gi|145538301|ref|XP_001454856.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124422633|emb|CAK87459.1| unnamed protein product [Paramecium tetraurelia]
Length = 228
Score = 157 bits (397), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 83/230 (36%), Positives = 134/230 (58%), Gaps = 13/230 (5%)
Query: 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61
I D P +T+Y+ LN+KIK E+LK LY LFSQ+G + +V KT KLRGQA++VF
Sbjct: 12 INQDSAPKETLYVTGLNDKIKLEDLKFVLYILFSQFGEVLQIVMKKTQKLRGQAFIVFQN 71
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAE 121
+T A+NA + YDKP+ I++A KS + +G F ++K++K+ + +
Sbjct: 72 ITYATNAKSALTGMMVYDKPLIIEFAYKKSVIFDRMEGKFYYKQKQQKELQPTLPTELVK 131
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
E +Q + + N NN+L I++LP T ML LF+QYP
Sbjct: 132 EKKQKKLED------------KLNNNPVFNQGEVNNVLLIESLPPFVTEIMLSELFRQYP 179
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G+ +++I A+ G+AFVE+++D Q+++A++ L FK+TP+ + + +AKK
Sbjct: 180 GYSLIKLISAR-GLAFVEYQNDDQATVALKGLNNFKVTPECQLKVKYAKK 228
>gi|223994655|ref|XP_002287011.1| predicted protein [Thalassiosira pseudonana CCMP1335]
gi|220978326|gb|EED96652.1| predicted protein [Thalassiosira pseudonana CCMP1335]
Length = 267
Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 76/245 (31%), Positives = 138/245 (56%), Gaps = 22/245 (8%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP-----KLRGQAWVVFSE 61
P N T+Y+ N++ IKK LKRSL LF+++G++ DV+ L+ LRGQAWV+F
Sbjct: 25 PANPTLYLSNIDWSIKKTLLKRSLLALFTRHGKVLDVICLRGDATGGRSLRGQAWVIFES 84
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAE 121
+AA+ A+ + F F+ +P+ + YAK SD +AK +G++ + K +++ K E
Sbjct: 85 QSAATAALEAERGFVFFGRPLMVNYAKDVSDRIAKRNGTYSKKTKDIREKRKLEGDGGGG 144
Query: 122 EAQQSSMANGTGAQSN---------------GGTAASFRNANTQETAAPNNILFIQNLPH 166
+ + +G+G + S + + P++++ QNLP
Sbjct: 145 GDAKMARVDGSGVNATTVNDPSSLVKKKEDVSAPTPSPKTGEITASTTPSSLILAQNLPS 204
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226
E + ML+MLFQQ+ G+K +++++A G+A +EF+ + Q+++A++ L GFK+TP + +
Sbjct: 205 ECSDMMLQMLFQQHAGYKGLKLVKA--GMATIEFDSESQATVALKGLNGFKLTPSATLDL 262
Query: 227 TFAKK 231
T+ +
Sbjct: 263 TYVAR 267
>gi|406694958|gb|EKC98273.1| hypothetical protein A1Q2_07287 [Trichosporon asahii var. asahii
CBS 8904]
Length = 865
Score = 156 bits (395), Expect = 5e-36, Method: Compositional matrix adjust.
Identities = 92/235 (39%), Positives = 137/235 (58%), Gaps = 9/235 (3%)
Query: 6 IPPN--QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PPN +T+Y+ NLNEK++ +K +L LF Y + +VA + ++RGQA+V F +
Sbjct: 631 LPPNASETLYLHNLNEKVRIPIMKETLASLFKPYHPLGPIVAHRNVRMRGQAFVSFRDKA 690
Query: 64 AASNAVRQMQNFPFYDKPMRI-QYAKSKSDCVA-KEDG--SFVPREKKKKQEEKAERKR- 118
A+ A R + FP Y KP++I +AK++SD V K+DG + +K++ ++K +RK
Sbjct: 691 TAALAQRDVNEFPLYGKPIQIIDFAKTRSDAVIEKQDGEEALEAWKKERLADKKTKRKTN 750
Query: 119 --RAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
RA + + T A S G A + E PNN+LF+QNLP TT L +
Sbjct: 751 VIRARNIAKHKAGDDTSAPSGPGAAKKPKLQMPDEYLPPNNVLFVQNLPEGTTQDDLREV 810
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F+QYPG E+R I AK IAFVE+ D+ S++A AL FKI + M +TFA+K
Sbjct: 811 FEQYPGLVEIRTIAAKKDIAFVEYADETASAVAKDALHNFKIDGETKMKVTFARK 865
>gi|74354072|gb|AAI02329.1| SNRPB2 protein [Bos taurus]
Length = 106
Score = 155 bits (393), Expect = 9e-36, Method: Compositional matrix adjust.
Identities = 69/105 (65%), Positives = 88/105 (83%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKKK
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKK 106
>gi|393218308|gb|EJD03796.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 279
Score = 155 bits (393), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 87/238 (36%), Positives = 135/238 (56%), Gaps = 10/238 (4%)
Query: 3 TGDIPP---NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVF 59
T +PP +T+YI+NLNE+IK +K++L+ LF YG + DVVA + ++RGQA+V F
Sbjct: 43 TPTVPPEVVTETLYIQNLNERIKLNVMKQTLHALFLNYGDVLDVVAHRNLRMRGQAFVSF 102
Query: 60 SEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKE-DGSFVPREKKKKQEEKAERKR 118
++ + A A R++ FP Y KPM+I +A+++SD V K D + K + E K ++ R
Sbjct: 103 ADASIAKKAQREVNRFPLYSKPMQISFARTRSDAVVKTVDLDHFDQHKAARLEHK-KKTR 161
Query: 119 RAEEAQQSSMANGTGAQSNGGTAASFRNANTQ---ETAAPNNILFIQNLPHETTSS--ML 173
++ A + +G + + Q E PN ILF+QNLP T S L
Sbjct: 162 YNNPLKRKFRARRLAEKMDGAALPAPKRPAVQMPDEYLPPNKILFLQNLPESVTDSKDQL 221
Query: 174 EMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
LF QYP +VR+I K IAFVE+ D+ ++ A AL +K+ ++ + IT+A+K
Sbjct: 222 LALFSQYPNLHDVRLIPTKKDIAFVEYSDEASATAAKDALHNYKLDGEHKIKITYARK 279
>gi|390601524|gb|EIN10918.1| RNA-binding domain-containing protein [Punctularia strigosozonata
HHB-11173 SS5]
Length = 247
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/243 (37%), Positives = 139/243 (57%), Gaps = 22/243 (9%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN T+Y+ NLN+K+ KEEL+ LY LF+ YG++ DV+A KTPK+RGQA++VFSE+ A++
Sbjct: 4 PNTTLYVNNLNDKVNKEELRAQLYALFTTYGKVIDVIASKTPKMRGQAFLVFSELAGATS 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS-DCVAKEDGSFVP------------REKKKKQEEKA 114
A+R + FYDKP+RIQYAK+KS + KED +FVP +K+ +E+ +
Sbjct: 64 ALRACEGMVFYDKPLRIQYAKTKSYATLKKEDPNFVPPNPAHAPQGVFSASEKRGREDDS 123
Query: 115 ERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAA-PNNILFIQNLPHETTSSML 173
E R ++ +Q ++ + A + + Q++ P+ L NLP E T ML
Sbjct: 124 ENIRPVKKEKQDDGSDDEEMEIEDDDDAPPKQQHQQQSEVQPSARLMASNLPQEVTEDML 183
Query: 174 EMLFQQYPGFKEVRMI-EAKPG-------IAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225
+LFQQY GF V++ A P +A+V FE + +A AL GF + PM
Sbjct: 184 SVLFQQYQGFLSVQVSPTATPDATGQAIKMAYVVFESPQLAMVAKDALHGFNLKKNWPMT 243
Query: 226 ITF 228
+ +
Sbjct: 244 VVY 246
>gi|82914978|ref|XP_728920.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23485600|gb|EAA20485.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 189
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 118/223 (52%), Gaps = 38/223 (17%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DIPPNQT+Y+ NL +KI +LK LY F YG + DVV K+ KLRGQA+V+FS + +
Sbjct: 5 DIPPNQTLYVNNLEDKINVNDLKYLLYEFFCPYGNVLDVVIKKSNKLRGQAFVIFSNIAS 64
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++ A + ++ PF +K + I YAK+KS + K DG++ P
Sbjct: 65 STLAYKNLKGKPFLNKNININYAKTKSKIIEKLDGTYNP--------------------- 103
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
++++AN E LF+QNLP E + LE+LF QYPGF
Sbjct: 104 ----------------IKNYKSANNYENKINQFTLFVQNLPDEINKNALEILFNQYPGFS 147
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227
EVR I + +AF++F +AM LQ F ITP +PM I+
Sbjct: 148 EVRYIPGR-NVAFIDFNSYQNGEVAMNGLQSFXITPDHPMKIS 189
>gi|392574488|gb|EIW67624.1| hypothetical protein TREMEDRAFT_33230 [Tremella mesenterica DSM
1558]
Length = 250
Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust.
Identities = 92/232 (39%), Positives = 136/232 (58%), Gaps = 7/232 (3%)
Query: 6 IPPN--QTIYIKNLNEKIKKEE-LKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
IP N +T+Y++NLNEK++ +K +L LF Y I VVA + ++RGQA+V F +V
Sbjct: 20 IPTNACETLYLQNLNEKVRLPAVMKETLGVLFKPYRPILPVVAHRNVRMRGQAFVTFHDV 79
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSD-CVAKEDGSFVPREKKKKQEEKAERKRRAE 121
A+ A R++ FP Y KP++I++AKS+SD V K +G E KK++ E+ +R RR
Sbjct: 80 ETANRARREVGEFPLYGKPIQIKFAKSRSDSAVVKLEGEEALEEHKKERLEQKKRSRRDN 139
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNA--NTQETAAPNNILFIQNLPHETTSSMLEMLFQQ 179
++ + A A + GG A R E PNN+LF+QNLP T + L +F
Sbjct: 140 PLRRKAAAK-LRADTEGGPAPVKRQKIQMPDEYLPPNNVLFVQNLPEGTEADELREVFGT 198
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+PG E+R I AK IAFVE+ D+ + +A AL FKI + M +T+A+K
Sbjct: 199 HPGLVEIRTIPAKKDIAFVEYTDEACAGLAKTALHNFKIDGETKMKVTYARK 250
>gi|393233936|gb|EJD41503.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 249
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/229 (37%), Positives = 129/229 (56%), Gaps = 8/229 (3%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
++T+YI+NLNEKIK +K++L LF YG + DVVA ++RGQA+V F A A
Sbjct: 23 SETLYIQNLNEKIKITVMKQTLKNLFKSYGNVLDVVAHSNIRMRGQAFVSFESKDIARKA 82
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVA-KEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
+++++ FP Y KPM++ +AK++SD V K D + KK++ E K R +R
Sbjct: 83 LKEVKGFPLYSKPMQVSFAKTRSDAVVQKLDADHLEEHKKERLEHK--RTQRWHNPHARK 140
Query: 128 MANGTGAQSNGGTA--ASFRNANT---QETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
A+ G A + + N E PN ILF+QNLP T L LF QYP
Sbjct: 141 ARAKRKAEKVDGAAPVPATKRPNVLMPDEYLPPNKILFLQNLPDSVTKDQLVTLFSQYPN 200
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR+I K IAFVE+ D+ +++A +AL +K+ + + +TFA+K
Sbjct: 201 LHEVRLIPTKKDIAFVEYVDEGSATVAKEALHNYKLDGETKIKVTFARK 249
>gi|213410425|ref|XP_002175982.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces japonicus
yFS275]
gi|212004029|gb|EEB09689.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces japonicus
yFS275]
Length = 249
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 91/233 (39%), Positives = 138/233 (59%), Gaps = 18/233 (7%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
++T+YI+NL E+IK E LKR L LF +YG+I V A KT ++RGQA+VVF + A+ A
Sbjct: 23 SETLYIRNLEERIKLEMLKRILEHLFGKYGKILHVYARKTLRMRGQAFVVFEDGRCAAQA 82
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKED-GSFVPREKKKKQEEKAERKRRAEEAQQSS 127
++ +Q FP Y KPM IQ++ SKSD V + D G V +E KKK+ AER+R ++ +
Sbjct: 83 LQDLQGFPLYGKPMLIQFSNSKSDIVVQRDEGELVLQENKKKRH--AERERMRQQGELRP 140
Query: 128 MANGTGAQSNGGTAASFRNANTQETAAPNNI---------LFIQNLPHETTSSMLEMLFQ 178
M Q +G A+ + N E P+ + L +QNLP E + +L +F
Sbjct: 141 M-----PQRSGHRKATNKKVNAGEKPMPHVVDDLLPPNKLLLLQNLPAEANAEVLTQIFG 195
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
Y GF EVRM+ + GIAFVEFE++ +++A + G + + + ++FA+K
Sbjct: 196 TYQGFTEVRMVPGRRGIAFVEFENENDAAIARDSTTGM-LLGETSIKVSFARK 247
>gi|145536596|ref|XP_001454020.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124421764|emb|CAK86623.1| unnamed protein product [Paramecium tetraurelia]
Length = 228
Score = 155 bits (391), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 87/230 (37%), Positives = 134/230 (58%), Gaps = 13/230 (5%)
Query: 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61
I D P +T+Y+ LN+KIK E+LK LY LFSQ+G + +V KT KLRGQA++VF
Sbjct: 12 IIQDSAPKETLYVTGLNDKIKLEDLKFILYILFSQFGEVLQMVMKKTQKLRGQAFIVFQN 71
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAE 121
+T A+NA + YDKP+ I++A KS + +G F ++K+ K+ + +
Sbjct: 72 ITYATNAKAALSGMIVYDKPLIIEFAYKKSVIFDRIEGKFYYKQKQHKELQPTLPNELMK 131
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
E +Q S N N E NN+L I++LP T ML LF+QYP
Sbjct: 132 EKKQKKFDEKIQNSS---------NFNQGEI---NNVLLIESLPPFVTEIMLSELFRQYP 179
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G+ +++I A+ G+AFVE+++D Q+++A++ L FKITP+ + + +AKK
Sbjct: 180 GYSLIKLIPAR-GLAFVEYQNDDQATVALKGLSNFKITPECQLKVKYAKK 228
>gi|302696767|ref|XP_003038062.1| hypothetical protein SCHCODRAFT_72118 [Schizophyllum commune H4-8]
gi|300111759|gb|EFJ03160.1| hypothetical protein SCHCODRAFT_72118 [Schizophyllum commune H4-8]
Length = 261
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 89/251 (35%), Positives = 136/251 (54%), Gaps = 30/251 (11%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN T+YIKNLN+K++K+EL+ LY LF+ YGRI D+V K P++RGQAW+VF+++ +A+
Sbjct: 10 PNTTLYIKNLNDKVQKDELRHQLYALFTTYGRIIDMVVSKAPRMRGQAWLVFADLASATT 69
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS-DCVAKEDGSFVP--------------REKKKKQEE 112
A+R Q FYDKPM I YAKSKS + +ED +FVP K+ + E+
Sbjct: 70 ALRACQGMVFYDKPMHIDYAKSKSFATLKREDPNFVPPTAVHASPFVNGKDPNKRARDED 129
Query: 113 KAE-RKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNI------LFIQNLP 165
A+ R+ + E+A +SS + +A P + L NLP
Sbjct: 130 TADTRQAKREKADESSDEEMEIDDEDEQPTQQAPPPPLTSSAVPTIVHQASSRLLCTNLP 189
Query: 166 HETTSSMLEMLFQQYPGFKEVRMIEA-KPG-------IAFVEFEDDVQSSMAMQALQGFK 217
E T +L +LFQQY G +++++ PG +A V +E S+A +AL GF+
Sbjct: 190 QEVTEDVLSVLFQQYRGLISTQVVQSPTPGPDGSKAKMAQVLYESAALGSVAKEALDGFQ 249
Query: 218 ITPQNPMAITF 228
+ M++ +
Sbjct: 250 LKKGWNMSVAY 260
>gi|384496525|gb|EIE87016.1| hypothetical protein RO3G_11727 [Rhizopus delemar RA 99-880]
Length = 292
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 84/235 (35%), Positives = 135/235 (57%), Gaps = 29/235 (12%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P++T+Y+ +K SL LF Q+G + DVVA + ++RGQA+V + + +A
Sbjct: 76 PSRTVYVI----------MKNSLRTLFKQFGEVLDVVAHRNIRMRGQAFVAYPDQESADK 125
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK--KQEEKAERK-------- 117
A++++Q+F YDKPM +QY++++SD AK DG + K + ++EE ++
Sbjct: 126 AIKELQHFVLYDKPMIVQYSRNRSDVHAKRDGDYEIHYKARIARKEEVSKMPLPGSHKPT 185
Query: 118 -RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
+ ++ A ++S GT S E PN+ILF+QNLP T L L
Sbjct: 186 FKSSKRANKTSRGKGTSQHSTAHIP--------DEYLPPNSILFLQNLPETITQQQLVDL 237
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
FQ+YPGF+EVR + AK IAFVE+E+++QS++A L G+ + P + +TFA+K
Sbjct: 238 FQRYPGFREVRTVPAKKSIAFVEYENEIQSAVARAELSGYFLGPDQALKVTFARK 292
>gi|67515655|ref|XP_657713.1| hypothetical protein AN0109.2 [Aspergillus nidulans FGSC A4]
gi|40746131|gb|EAA65287.1| hypothetical protein AN0109.2 [Aspergillus nidulans FGSC A4]
gi|259489698|tpe|CBF90183.1| TPA: U1 small nuclear ribonucleoprotein, putative (AFU_orthologue;
AFUA_5G11930) [Aspergillus nidulans FGSC A4]
Length = 252
Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 81/250 (32%), Positives = 139/250 (55%), Gaps = 23/250 (9%)
Query: 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61
+ +IPPN T+Y++NL E+IK ++LK +L +FS+YG I ++VA + K +GQA++VF
Sbjct: 6 VPSNIPPNPTVYVRNLEERIKLDQLKEALSEIFSEYGTILEIVAKRNLKAKGQAFIVFDN 65
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAE 121
V +A+ A+ ++ F +DKPM + YAK++SD + +G E K++ + +R+A
Sbjct: 66 VDSATRAIDEVNGFDLFDKPMVLDYAKTRSDATVRREGGDEELEAHKRRRLAEKERRQAH 125
Query: 122 EAQQS-------------------SMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQ 162
EA ++ A G G + G AA+ E PN ILF++
Sbjct: 126 EALEAQKKLKRPPVGAPEAPGRPVKAAKGAGLKPTSGAAAAV---IPDEYLPPNKILFLR 182
Query: 163 NLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN 222
LP L +F ++ GF+EVR++ + GIAFVE+E++ + A +A G + P+
Sbjct: 183 ELPDTADQGSLTAVFGRFEGFREVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGPEG 242
Query: 223 -PMAITFAKK 231
P+ +T+ ++
Sbjct: 243 KPIRVTYQRQ 252
>gi|145544152|ref|XP_001457761.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425579|emb|CAK90364.1| unnamed protein product [Paramecium tetraurelia]
Length = 228
Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 84/230 (36%), Positives = 132/230 (57%), Gaps = 13/230 (5%)
Query: 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61
I D P +T+Y+ LN+KIK E+LK LY LFSQ+G + +V KT KLRGQA++VF
Sbjct: 12 IIQDSAPKETLYVTGLNDKIKLEDLKFVLYILFSQFGEVLQMVMKKTQKLRGQAFIVFQN 71
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAE 121
+T A+NA + YDKP+ I++A KS + +G F ++K+ K
Sbjct: 72 ITYATNAKSALSGMIVYDKPLIIEFAYKKSVIFDRIEGKFYYKQKQHK------------ 119
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
E Q + + +N++ NN+L I++LP T ML LF+QYP
Sbjct: 120 ELQPTLPNELMKEKKQKKFEEKIQNSSNLNQGEINNVLLIESLPPFVTEIMLSELFRQYP 179
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
G+ +++I A+ G+AFVE+++D Q+++A++ L FKITP+ + + +AKK
Sbjct: 180 GYSLIKLIPAR-GLAFVEYQNDDQATVALKGLSNFKITPECQLKVKYAKK 228
>gi|119174440|ref|XP_001239581.1| hypothetical protein CIMG_09202 [Coccidioides immitis RS]
gi|303314307|ref|XP_003067162.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106830|gb|EER25017.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|320037431|gb|EFW19368.1| U1 small nuclear ribonucleoprotein [Coccidioides posadasii str.
Silveira]
gi|392869777|gb|EAS28302.2| U1 small nuclear ribonucleoprotein [Coccidioides immitis RS]
Length = 251
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 82/241 (34%), Positives = 137/241 (56%), Gaps = 15/241 (6%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN T+Y++NL E+IK E+LK +L +FS+YG I ++VA K +GQA++VF V +A
Sbjct: 11 IPPNSTVYVRNLEERIKVEQLKEALSEIFSEYGSILEIVAKTNVKAKGQAFIVFDNVDSA 70
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA-- 123
+ A+ ++ F ++KPM + YAK++SD +G E K++ + +++A+EA
Sbjct: 71 TRAIEEINGFELFEKPMVLDYAKTRSDATVLREGGEQELEAHKRKRLAEKERKQAQEALE 130
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAA------------PNNILFIQNLPHETTSS 171
Q + A ++ A + R A + T A PN ILF++ +P +S
Sbjct: 131 AQKKLKRPAAATADTRPAKTTRGAGLKPTGAAAAPVIPDEYLPPNKILFLREVPDSYDAS 190
Query: 172 MLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITFAK 230
L +F ++ GFKEVRM+ + GIAFVE+E++ + A +A G + PM +T+ +
Sbjct: 191 GLTAIFSRFEGFKEVRMVPGRKGIAFVEYENETGAISAKEATSGMALGENGKPMRVTYQR 250
Query: 231 K 231
+
Sbjct: 251 Q 251
>gi|405123760|gb|AFR98523.1| RNA binding protein [Cryptococcus neoformans var. grubii H99]
Length = 284
Score = 153 bits (386), Expect = 6e-35, Method: Compositional matrix adjust.
Identities = 87/232 (37%), Positives = 135/232 (58%), Gaps = 6/232 (2%)
Query: 6 IPPN--QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
IP N +T+Y++NLNEK++ +K +LY LF Y + ++A ++RGQA+V F ++
Sbjct: 53 IPDNACETLYLQNLNEKVRIPVMKETLYNLFKPYRPLQPIIAHHNIRMRGQAFVSFPDIE 112
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS---FVPREKKKKQEEKAERKRRA 120
+A+ A + + FP Y K ++IQ+AK SD + K G F K++ +E+K +RK
Sbjct: 113 SANEARKDVNEFPLYGKSIQIQFAKGLSDSIVKRKGDEREFEEHTKRRLEEKKLKRKNNP 172
Query: 121 -EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQ 179
+ Q+ + T A + G A R E PN++LF+QNLP TTS L +F+
Sbjct: 173 LRQKSQAKLRADTTAGTAGPAAKKQRLQMPDEYLPPNSVLFVQNLPDGTTSEDLREVFEV 232
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+PG E+R I AK IAFVEF D+ +++A AL FKI + M +T+A+K
Sbjct: 233 HPGLIEIRTIPAKKDIAFVEFADEGAATIAKDALHNFKIDGETKMKVTYARK 284
>gi|440910289|gb|ELR60098.1| U1 small nuclear ribonucleoprotein A, partial [Bos grunniens mutus]
Length = 287
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 13 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 72
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 73 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 132
Query: 127 SMA 129
A
Sbjct: 133 GAA 135
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 211 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 270
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 271 GFKITQNNAMKISFAKK 287
>gi|290992905|ref|XP_002679074.1| predicted protein [Naegleria gruberi]
gi|284092689|gb|EFC46330.1| predicted protein [Naegleria gruberi]
Length = 212
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 141/235 (60%), Gaps = 37/235 (15%)
Query: 2 ITGD----IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWV 57
ITGD I PN TIYI N+NEKIK LK+ LY +F Q+G + DV+A + K RGQA++
Sbjct: 8 ITGDDQEQIMPNNTIYINNINEKIKVPTLKKQLYSMFGQFGEVLDVIASRYEKTRGQAFI 67
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
VF +V A+ A +++ + F+DKPM I +AKSKSD AK DG++ +E KA+RK
Sbjct: 68 VFKDVATATAAKKKLNGYVFHDKPMHINFAKSKSDATAKLDGNY--------EEYKAKRK 119
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH--ETTSSMLEM 175
+ E ++QS +E P+++LFI+NLP E +S +LE
Sbjct: 120 VKQESSKQS---------------------RREENLVPSSVLFIENLPRDVEKSSELLET 158
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
LF Y G+K++R++ K G+AFVE+E Q++ A + LQ +KI Q PM I+F K
Sbjct: 159 LFNNYDGYKKLRLVGEK-GVAFVEYETIEQATSAREGLQSWKIK-QQPMRISFKK 211
>gi|116175267|ref|NP_001070690.1| U1 small nuclear ribonucleoprotein A [Sus scrofa]
gi|122131847|sp|Q06AA4.1|SNRPA_PIG RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|115371743|gb|ABI96196.1| SNRPA [Sus scrofa]
Length = 282
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 98/127 (77%), Gaps = 5/127 (3%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+++ RK +++E S
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREK-----RKPKSQETPASK 122
Query: 128 MANGTGA 134
A GA
Sbjct: 123 KAVQGGA 129
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|395859647|ref|XP_003802145.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Otolemur
garnettii]
Length = 282
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPSAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|351715411|gb|EHB18330.1| U1 small nuclear ribonucleoprotein A [Heterocephalus glaber]
Length = 282
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPSAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|390479015|ref|XP_003735632.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein
A-like [Callithrix jacchus]
Length = 275
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 199 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 258
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 259 GFKITQNNAMKISFAKK 275
>gi|348552486|ref|XP_003462058.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Cavia
porcellus]
Length = 282
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPSAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|114051315|ref|NP_001039504.1| U1 small nuclear ribonucleoprotein A [Bos taurus]
gi|187607541|ref|NP_001119825.1| U1 small nuclear ribonucleoprotein A [Ovis aries]
gi|122142801|sp|Q2KIR1.1|SNRPA_BOVIN RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|86437996|gb|AAI12545.1| Small nuclear ribonucleoprotein polypeptide A [Bos taurus]
gi|184191137|gb|ACC76781.1| SNPRA [Ovis aries]
gi|296477802|tpg|DAA19917.1| TPA: U1 small nuclear ribonucleoprotein A [Bos taurus]
Length = 282
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|410983004|ref|XP_003997834.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Felis catus]
Length = 282
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|355721034|gb|AES07131.1| small nuclear ribonucleoprotein polypeptide A [Mustela putorius
furo]
Length = 281
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/76 (60%), Positives = 57/76 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAK 230
GFKIT N M I+FAK
Sbjct: 266 GFKITQNNAMKISFAK 281
>gi|145343730|ref|XP_001416465.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144576690|gb|ABO94758.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 220
Score = 152 bits (384), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 76/227 (33%), Positives = 126/227 (55%), Gaps = 23/227 (10%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
T+Y+ NLNEK+ K+EL+ +L+ +FS +G++ D+V T +LRGQAW+V+ A+NA+
Sbjct: 10 HTLYVNNLNEKVPKQELRAALHAVFSPFGKVLDIVTANTYRLRGQAWIVYDTSMDANNAM 69
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMA 129
+ +Q+FPFYDKPM+I A + SD + + G + R+ + K E + R ++++ A
Sbjct: 70 QSLQSFPFYDKPMKIVVANTTSDAIRRRRGEHIERDGAVRLSRKVENQERERLRRKNATA 129
Query: 130 NGTGAQSNGGTAASFRNANTQETAA-------PNNILFIQNLPHETTSSMLEMLFQQYPG 182
NA E A P+ + +Q LP TT+ ML +LFQQ+ G
Sbjct: 130 ---------------ENATRHEPKAMDGMKRPPSTRIAVQGLPGATTTHMLALLFQQFSG 174
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
+K+ M + G VEF+ + A+ LQGF++ + + ++FA
Sbjct: 175 YKDATMTR-ESGDGEVEFDTTANAVAALNGLQGFRLNANHSLTLSFA 220
>gi|73948310|ref|XP_533663.2| PREDICTED: U1 small nuclear ribonucleoprotein A [Canis lupus
familiaris]
gi|149722301|ref|XP_001499386.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Equus
caballus]
gi|301776649|ref|XP_002923740.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Ailuropoda
melanoleuca]
gi|403305332|ref|XP_003943221.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Saimiri
boliviensis boliviensis]
gi|281340732|gb|EFB16316.1| hypothetical protein PANDA_012942 [Ailuropoda melanoleuca]
Length = 282
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|354486243|ref|XP_003505291.1| PREDICTED: LOW QUALITY PROTEIN: U1 small nuclear ribonucleoprotein
A-like [Cricetulus griseus]
Length = 284
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 208 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 267
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 268 GFKITQNNAMKISFAKK 284
>gi|126723082|ref|NP_001075629.1| nuclear ribonucleoprotein A [Oryctolagus cuniculus]
gi|38641409|gb|AAR26269.1| nuclear ribonucleoprotein A [Oryctolagus cuniculus]
Length = 282
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A +LQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDSLQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|56605690|ref|NP_001008304.1| U1 small nuclear ribonucleoprotein A [Rattus norvegicus]
gi|55562825|gb|AAH86331.1| Small nuclear ribonucleoprotein polypeptide A [Rattus norvegicus]
gi|149056537|gb|EDM07968.1| small nuclear ribonucleoprotein polypeptide A [Rattus norvegicus]
Length = 281
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 205 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 264
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 265 GFKITQNNAMKISFAKK 281
>gi|431920192|gb|ELK18231.1| U1 small nuclear ribonucleoprotein A [Pteropus alecto]
Length = 282
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|444732044|gb|ELW72368.1| U1 small nuclear ribonucleoprotein A [Tupaia chinensis]
Length = 282
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQDTPSAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|432109445|gb|ELK33675.1| U1 small nuclear ribonucleoprotein A [Myotis davidii]
Length = 282
Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|242207485|ref|XP_002469596.1| predicted protein [Postia placenta Mad-698-R]
gi|220731400|gb|EED85245.1| predicted protein [Postia placenta Mad-698-R]
Length = 231
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 84/218 (38%), Positives = 123/218 (56%), Gaps = 4/218 (1%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
++T+YI+NLNEKIK LK SL LF YG + DVVA ++RGQA+V F A A
Sbjct: 5 SETLYIQNLNEKIKIPVLKASLRGLFKAYGEVLDVVAHSNLRMRGQAFVSFESADVAKKA 64
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSM 128
+++++ FP Y KPM+I +A+++SD V K+ + E K + E+ + R ++
Sbjct: 65 LKEVKGFPLYSKPMQISFARTRSDAVVKKLDAARFEEHKAHRIEQKKSTRYTNPIKRKYR 124
Query: 129 ANGTGAQSNG-GTAASFRNANTQ---ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
A A+ +G G + N Q E PN ILF+QNLP + L LF QYP
Sbjct: 125 ARKMAAELDGPGAVPVSKRPNVQMPDEYLPPNKILFLQNLPDSVSKDQLMALFSQYPNLY 184
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN 222
EVR+I K IAFVE+ D+ +++A AL +K+ +N
Sbjct: 185 EVRLIPTKKDIAFVEYMDEGSATVAKDALHNYKLDGEN 222
Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN+ ++++NL + + K++ L LFSQY +++V + T K A+V + + +A
Sbjct: 153 LPPNKILFLQNLPDSVSKDQ----LMALFSQYPNLYEVRLIPTKK--DIAFVEYMDEGSA 206
Query: 66 SNAVRQMQNF 75
+ A + N+
Sbjct: 207 TVAKDALHNY 216
>gi|383873129|ref|NP_001244434.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|114677331|ref|XP_512674.2| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 2 [Pan
troglodytes]
gi|297704832|ref|XP_002829283.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Pongo abelii]
gi|397482634|ref|XP_003812525.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Pan paniscus]
gi|402905610|ref|XP_003915609.1| PREDICTED: U1 small nuclear ribonucleoprotein A [Papio anubis]
gi|355703564|gb|EHH30055.1| hypothetical protein EGK_10636 [Macaca mulatta]
gi|355755853|gb|EHH59600.1| hypothetical protein EGM_09749 [Macaca fascicularis]
gi|380784673|gb|AFE64212.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|383414025|gb|AFH30226.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|384943590|gb|AFI35400.1| U1 small nuclear ribonucleoprotein A [Macaca mulatta]
gi|410207170|gb|JAA00804.1| small nuclear ribonucleoprotein polypeptide A [Pan troglodytes]
gi|410287236|gb|JAA22218.1| small nuclear ribonucleoprotein polypeptide A [Pan troglodytes]
Length = 282
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 98/133 (73%), Gaps = 3/133 (2%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ EK + K + A + +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR---EKRKPKSQETPATKKA 124
Query: 128 MANGTGAQSNGGT 140
+ G A G
Sbjct: 125 VQGGGAAPVVGAV 137
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|426388777|ref|XP_004060809.1| PREDICTED: U1 small nuclear ribonucleoprotein A isoform 1 [Gorilla
gorilla gorilla]
Length = 282
Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/133 (53%), Positives = 98/133 (73%), Gaps = 3/133 (2%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ EK + K + A + +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKR---EKRKPKSQETPATKKA 124
Query: 128 MANGTGAQSNGGT 140
+ G A G
Sbjct: 125 VQGGGAAPVVGAV 137
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|344250312|gb|EGW06416.1| U1 small nuclear ribonucleoprotein A [Cricetulus griseus]
Length = 291
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 215 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 274
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 275 GFKITQNNAMKISFAKK 291
>gi|4759156|ref|NP_004587.1| U1 small nuclear ribonucleoprotein A [Homo sapiens]
gi|134092|sp|P09012.3|SNRPA_HUMAN RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|315583598|pdb|3PGW|A Chain A, Crystal Structure Of Human U1 Snrnp
gi|315583607|pdb|3PGW|P Chain P, Crystal Structure Of Human U1 Snrnp
gi|37541|emb|CAA29653.1| unnamed protein product [Homo sapiens]
gi|340052|gb|AAA61245.1| U1 snRNP-specific protein A [Homo sapiens]
gi|12653273|gb|AAH00405.1| Small nuclear ribonucleoprotein polypeptide A [Homo sapiens]
gi|14249835|gb|AAH08290.1| Small nuclear ribonucleoprotein polypeptide A [Homo sapiens]
gi|119577399|gb|EAW56995.1| small nuclear ribonucleoprotein polypeptide A, isoform CRA_a [Homo
sapiens]
gi|208967436|dbj|BAG73732.1| small nuclear ribonucleoprotein polypeptide A [synthetic construct]
Length = 282
Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 99/128 (77%), Gaps = 6/128 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+++ RK +++E +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREK-----RKPKSQETPATK 122
Query: 128 MA-NGTGA 134
A G GA
Sbjct: 123 KAVQGGGA 130
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|328774045|gb|EGF84082.1| hypothetical protein BATDEDRAFT_84797 [Batrachochytrium
dendrobatidis JAM81]
Length = 262
Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 80/221 (36%), Positives = 134/221 (60%), Gaps = 18/221 (8%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQ 71
+Y++NL E LK +L +FS+YG I D+ + RGQA+V F V +A A +
Sbjct: 59 LYVRNLRETRNLTALKTALSTVFSKYGDILDIKVKRNVGHRGQAFVSFQTVESAVKAKEE 118
Query: 72 MQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANG 131
+ FP +++PM IQ+A+ +S V+ G+ E+ K++ ++ ++R A +A ++S
Sbjct: 119 VNGFPLFNRPMDIQFAREQSFAVSVLAGTV---EEHKRKRKEMLKERSAFDASEASRKK- 174
Query: 132 TGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA 191
+ +N++E+ PN+ILFIQNLP + T++ L LF Q+PGFKEVR++
Sbjct: 175 -------------QKSNSEESLPPNSILFIQNLPTDITNASLSALFNQFPGFKEVRLVPG 221
Query: 192 KPGIAFVEFEDDVQSSMAMQALQGFKITP-QNPMAITFAKK 231
+ IAFVE+ +++ S++A QAL G+++ P Q + +TFAKK
Sbjct: 222 RSDIAFVEYHNEMHSAIAKQALHGYRLLPEQEEIKVTFAKK 262
>gi|189053747|dbj|BAG35999.1| unnamed protein product [Homo sapiens]
Length = 282
Score = 150 bits (379), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 70/128 (54%), Positives = 99/128 (77%), Gaps = 6/128 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPMRIQYA++ SD +AK G+FV R++K+++ RK +++E +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYARTDSDIIAKMKGTFVERDRKREK-----RKPKSQETPATK 122
Query: 128 MA-NGTGA 134
A G GA
Sbjct: 123 KAVQGGGA 130
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>gi|212529314|ref|XP_002144814.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
gi|210074212|gb|EEA28299.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
Length = 254
Score = 150 bits (378), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 140/246 (56%), Gaps = 24/246 (9%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPN T+Y+ NL E++K ++LK +L +FS+YG I ++VA K K +GQA++VF V +A
Sbjct: 12 PPNPTVYVHNLEERVKIDDLKEALTEIFSEYGTILEIVAKKNLKAKGQAFIVFDNVESAQ 71
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGS----------FVPREKKKKQEE-KA 114
A+ ++ F KPM + +AK++SD V +E GS +E+K+ QE +A
Sbjct: 72 RAIEEVNGFDLLGKPMSLDFAKTRSDATVLREGGSDELEVHKRKRLAEKERKQAQEALEA 131
Query: 115 ERKRR--------AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH 166
++K + AE + + A GTG + G A + E PN ILF++ LP
Sbjct: 132 QKKLKRPAGVPVPAEAGRPAKAARGTGLKPTTGAATAV---VPDEYLPPNKILFLRELPE 188
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ-NPMA 225
+ + ML +F ++ GF+EVR++ + GIAFVE+E++ + A +A G + P P+
Sbjct: 189 DADADMLTSIFGRFEGFREVRLVPGRKGIAFVEYENETGAISAKEATSGMPMGPNAKPIR 248
Query: 226 ITFAKK 231
+T+ ++
Sbjct: 249 VTYQRQ 254
>gi|345570654|gb|EGX53475.1| hypothetical protein AOL_s00006g341 [Arthrobotrys oligospora ATCC
24927]
Length = 255
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 133/239 (55%), Gaps = 26/239 (10%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P+ T+Y +NL E +K L +L LFSQYG I +++A K + RGQA+VVF AA
Sbjct: 4 PSSTVYCRNLEESVKIPVLTATLETLFSQYGTILEIIAKKNLRARGQAFVVFDSPEAAER 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS---FVPREKKKKQEEKAERKRRAEEAQ 124
A++++Q F ++KPM +QYAK+KSD + + S F ++++ E++ ++ RA EAQ
Sbjct: 64 AIKEVQGFNLFEKPMVLQYAKTKSDATVQLESSETEFEAHKRRRLAEKERKQALRAAEAQ 123
Query: 125 Q-------SSMANGTGAQSN-------------GGTAASFRNANTQ---ETAAPNNILFI 161
+ S + G GA S GG ++ A Q E PN ILF+
Sbjct: 124 KHLKRPAASGPSQGIGADSRPAKKTQISAPSAPGGLKSTAAPAAPQIPDEYLPPNKILFL 183
Query: 162 QNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITP 220
QNLP TS +L +F + GFKEVR++ + GIAFVE+E++ + A + QG + P
Sbjct: 184 QNLPDNATSDILNGIFGSFEGFKEVRLVPGRKGIAFVEYENEAGAISAKENTQGMSLGP 242
>gi|327297312|ref|XP_003233350.1| U1 small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
gi|326464656|gb|EGD90109.1| U1 small nuclear ribonucleoprotein [Trichophyton rubrum CBS 118892]
Length = 256
Score = 149 bits (377), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 136/249 (54%), Gaps = 26/249 (10%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN T+Y++NL E+IK E+LK +L +FS+YG I ++VA K +GQA++VF V +A
Sbjct: 11 IPPNPTVYVRNLEERIKVEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVESA 70
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
+ A+ ++ F ++KPM ++YAK+KSD +G E K+ + +++A+EA +
Sbjct: 71 TRAIDEVNGFELFEKPMVLEYAKTKSDATVMREGGDEELEAHKRMRLAEKERKQAQEALE 130
Query: 126 ----------------------SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQN 163
+ GTG + G AA E PN ILF++
Sbjct: 131 AQKKLKRPAGAAGTAGGPDSRPTKAQKGTGLKPTGTAAAP---VVPDEYLPPNKILFLRE 187
Query: 164 LPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITP-QN 222
LP + L +F ++PGFKE+RM+ + GIAFVE+E++ + A +A G + +
Sbjct: 188 LPETYDADGLSAIFGRFPGFKEIRMVPGRKGIAFVEYENESGAISAKEATSGMALGENEK 247
Query: 223 PMAITFAKK 231
P+ +T+ ++
Sbjct: 248 PIKVTYQRQ 256
>gi|114052106|ref|NP_056597.3| U1 small nuclear ribonucleoprotein A [Mus musculus]
gi|114052541|ref|NP_001040102.1| U1 small nuclear ribonucleoprotein A [Mus musculus]
gi|41017904|sp|Q62189.3|SNRPA_MOUSE RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|349004|gb|AAC37611.1| small nuclear RNA [Mus musculus]
gi|13096860|gb|AAH03229.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|62740156|gb|AAH94006.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|66794539|gb|AAH96648.1| Small nuclear ribonucleoprotein polypeptide A [Mus musculus]
gi|148692250|gb|EDL24197.1| mCG22754, isoform CRA_a [Mus musculus]
gi|148692251|gb|EDL24198.1| mCG22754, isoform CRA_a [Mus musculus]
Length = 287
Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 96/122 (78%), Gaps = 1/122 (0%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ + K+RGQA+V+F EVT+A+NA
Sbjct: 15 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNA 74
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQSS 127
+R MQ FPFYDKPMRIQYAK+ SD +AK G++V R++K+ K++ K++ A++A Q
Sbjct: 75 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGG 134
Query: 128 MA 129
A
Sbjct: 135 AA 136
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 211 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 270
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 271 GFKITQNNAMKISFAKK 287
>gi|328850245|gb|EGF99412.1| hypothetical protein MELLADRAFT_40307 [Melampsora larici-populina
98AG31]
Length = 252
Score = 149 bits (376), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 77/230 (33%), Positives = 133/230 (57%), Gaps = 6/230 (2%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P+ T+Y++NL +K+KKE+L+R LY LFS +G++ DVVALK ++RGQA++VF ++ ++
Sbjct: 22 PSPTLYVQNLCDKLKKEDLRRMLYQLFSVHGKVLDVVALKGGQMRGQAFIVFRDLQGSTQ 81
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKE-DGSFVPREKK-----KKQEEKAERKRRAE 121
A+R + F ++ ++I+YA+ +S K+ G V + + + + R +
Sbjct: 82 AMRYLDGTLFLERELKIKYARKRSFATVKQIAGDEVLYQVRLGLIDPETLQDVARSKLTV 141
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
Q++ + + +A PN +LF++ LP E T M+ +LFQQYP
Sbjct: 142 SGAQAANVKQPADSAAAAAVKAAGSAPVLSGEDPNPVLFLEGLPAEVTDDMMAVLFQQYP 201
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
GF+ VR++ + GI FV+++ QS MA AL GF++ P M + FA++
Sbjct: 202 GFQSVRLVPGRTGIGFVQYDTSTQSDMAKTALDGFQLAPGVMMKVGFARR 251
>gi|157831077|pdb|1FHT|A Chain A, Rna-Binding Domain Of The U1a Spliceosomal Protein U1a117,
Nmr, 43 Structures
Length = 116
Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 64/105 (60%), Positives = 89/105 (84%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 66
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+++ +
Sbjct: 67 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRK 111
>gi|1173326|sp|P45429.1|SNRPA_XENLA RecName: Full=U1 small nuclear ribonucleoprotein A; Short=U1 snRNP
A; Short=U1-A; Short=U1A
gi|65181|emb|CAA41021.1| U1 A protein [Xenopus laevis]
Length = 282
Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 91/111 (81%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ + K+RGQA+V+F E ++
Sbjct: 5 EVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSS 64
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE 115
A+NA+R MQ FPFYDKPMRIQY+K+ SD +AK G+FV R++K++++ K +
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVK 115
Score = 99.0 bits (245), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 59/77 (76%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ++LQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQSNSMKISFAKK 282
>gi|317150456|ref|XP_001824039.2| U1 small nuclear ribonucleoprotein usp102 [Aspergillus oryzae
RIB40]
Length = 251
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 142/245 (57%), Gaps = 23/245 (9%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN T+Y++NL E++K ++LK +L +FS+YG + D+VA K +GQA++VF V +A
Sbjct: 11 IPPNSTVYVRNLEERVKVDQLKEALEEIFSEYGNVIDIVAKTNLKAKGQAFIVFDSVESA 70
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAE--E 122
SNA+ ++ F +DKPM + +AK++SD V +E G K+++ + ERK+ E E
Sbjct: 71 SNAIDEINGFELFDKPMVLDFAKTRSDATVLREGGEDELEAHKRRRLAEKERKQAHEALE 130
Query: 123 AQQ--------------SSMANGTGAQ-SNGGTAASFRNANTQETAAPNNILFIQNLPHE 167
AQ+ + A G G + ++G TAA + E PN ILF+++LP
Sbjct: 131 AQKKLKRPPGAPDSTRPAKTAKGAGLKPTSGATAAVIPD----EYLPPNKILFLRDLPDT 186
Query: 168 TTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAI 226
L +F ++ GF+EVR++ + GIAFVE+E++ + A +A G + P+ +
Sbjct: 187 ADQESLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGESGKPIRV 246
Query: 227 TFAKK 231
T+ ++
Sbjct: 247 TYQRQ 251
>gi|326481613|gb|EGE05623.1| U1 small nuclear ribonucleoprotein [Trichophyton equinum CBS
127.97]
Length = 256
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 82/249 (32%), Positives = 136/249 (54%), Gaps = 26/249 (10%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN T+Y++NL E+IK E+LK +L +FS+YG I ++VA K +GQA++VF V +A
Sbjct: 11 IPPNPTVYVRNLEERIKVEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVDSA 70
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
+ A+ ++ F ++KPM ++YAK+KSD +G E K++ + +++A+EA +
Sbjct: 71 TRAIDEVNGFELFEKPMVLEYAKTKSDATVMREGGDEELEVHKRRRLAEKERKQAQEALE 130
Query: 126 ----------------------SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQN 163
+ G G + G AA E PN ILF++
Sbjct: 131 AQKKLKRPAGAAGTAGGPDSRPAKAQKGAGLKPTGTAAAPV---IPDEYLPPNKILFLRE 187
Query: 164 LPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITP-QN 222
LP + L +F ++PGFKEVRM+ + GIAFVE+E++ + A +A G + +
Sbjct: 188 LPESYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYENESGAISAKEATSGMALGENEK 247
Query: 223 PMAITFAKK 231
P+ +T+ ++
Sbjct: 248 PIKVTYQRQ 256
>gi|296809910|ref|XP_002845293.1| small nuclear ribonucleoprotein U [Arthroderma otae CBS 113480]
gi|238842681|gb|EEQ32343.1| small nuclear ribonucleoprotein U [Arthroderma otae CBS 113480]
Length = 256
Score = 148 bits (374), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/249 (32%), Positives = 137/249 (55%), Gaps = 26/249 (10%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN T+Y++NL E+IK E+LK +L +FS+YG I ++VA K +GQA++VF V +A
Sbjct: 11 IPPNPTVYVRNLEERIKIEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVDSA 70
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
+ A+ ++ F ++KPM ++YAK++SD +G E K++ + +++A+EA +
Sbjct: 71 TRAIDEVNGFELFEKPMVLEYAKTRSDATVMREGGDEELEAHKRRRLAEKERKQAQEALE 130
Query: 126 ----------------------SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQN 163
+ A G G + G AA E PN ILF++
Sbjct: 131 AQKKLKRPAGAAGAAGGPDSRPAKTAKGAGLKPIGAAAAPV---IPDEYLPPNKILFLRE 187
Query: 164 LPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITP-QN 222
LP + L +F ++PGFKEVRM+ + GIAFVE++++ + A +A G + +
Sbjct: 188 LPETYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYDNESGAISAKEATSGMALGENEK 247
Query: 223 PMAITFAKK 231
P+ +T+ ++
Sbjct: 248 PIKVTYQRQ 256
>gi|378726702|gb|EHY53161.1| U2 small nuclear ribonucleoprotein B'' [Exophiala dermatitidis
NIH/UT8656]
Length = 256
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 84/234 (35%), Positives = 132/234 (56%), Gaps = 25/234 (10%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PP+ T+Y+KNL E+IK ++LK +L +FS+YG I D+VA K K +GQA+VVF +A+
Sbjct: 12 PPSSTVYVKNLEERIKIDQLKEALTEIFSEYGNIIDLVAKKNLKAKGQAFVVFDSAESAA 71
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
A+ ++ F +DKPM++ +A+++SD V KE+G + K+ + + ERK+ E QQ
Sbjct: 72 KAIEEVNGFELFDKPMQLDFARTRSDATVLKEEGEQGLEKWKRSRLAEKERKQAQEATQQ 131
Query: 126 ---------------------SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164
+ A G G + +G AA+ E PN ILFI++L
Sbjct: 132 KLKRPAQAAGAQEGAGLAGRPAKTAKGAGLKPSGTNAAAI---IPDEYLPPNKILFIRDL 188
Query: 165 PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
P + L +F ++ GFKEVRM+ + GIAFVE+E + + A +A G ++
Sbjct: 189 PDSYDADGLSRIFSRFEGFKEVRMVPGRKGIAFVEYESEAGAISAKEATAGMQL 242
>gi|126329351|ref|XP_001371614.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Monodelphis
domestica]
Length = 340
Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 93/115 (80%), Gaps = 5/115 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F E+++A+N
Sbjct: 67 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEISSATN 126
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
A+R MQ FPFYDKPMRIQYAKS SD +AK G++V R++K+++ RK + +E
Sbjct: 127 ALRSMQGFPFYDKPMRIQYAKSDSDIIAKMKGTYVERDRKREK-----RKPKGQE 176
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 264 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 323
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 324 GFKITQNNAMKISFAKK 340
>gi|399218844|emb|CCF75731.1| unnamed protein product [Babesia microti strain RI]
Length = 199
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 81/230 (35%), Positives = 125/230 (54%), Gaps = 35/230 (15%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
+ TGDIPPNQT+Y NLN+ I +EL LY LF YG + D+VA + RGQA++VF
Sbjct: 4 IYTGDIPPNQTLYANNLNDNINIKELTHLLYELFVPYGEVIDIVAQRGNAKRGQAFIVFK 63
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
E+ +A+NA+R +Q K + + YAK+KS+ + G+F + K K + + K A
Sbjct: 64 EIASATNALRSLQGRVILGKKLNLNYAKTKSNATLIQMGAF--KLNKPKADVIQDIKVDA 121
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
+ + +F++NLP +TT +E+LF QY
Sbjct: 122 PQDVHT--------------------------------IFVENLPPDTTQRAVEILFSQY 149
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
PG+ R I + G+AFV++E VQ+ + +Q LQGF+ITP P+++ A+
Sbjct: 150 PGYVGCRFILDR-GVAFVDYEKSVQAEVTIQGLQGFRITPDFPISLKIAR 198
>gi|355721044|gb|AES07134.1| small nuclear ribonucleoprotein polypeptide B [Mustela putorius
furo]
Length = 120
Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 64/97 (65%), Positives = 82/97 (84%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 12 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 71
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F
Sbjct: 72 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 108
>gi|27692318|gb|AAH08311.1| Similar to small nuclear ribonucleoprotein polypeptide B'', partial
[Homo sapiens]
Length = 109
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/97 (65%), Positives = 82/97 (84%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF 98
>gi|12836810|dbj|BAB23823.1| unnamed protein product [Mus musculus]
Length = 101
Score = 147 bits (372), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 64/100 (64%), Positives = 83/100 (83%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPR 104
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADK 101
>gi|242763791|ref|XP_002340645.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces
stipitatus ATCC 10500]
gi|218723841|gb|EED23258.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces
stipitatus ATCC 10500]
Length = 254
Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 87/248 (35%), Positives = 140/248 (56%), Gaps = 26/248 (10%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN T Y+ NL E++K +ELK +L +FS+YG I ++VA K K +GQA++VF V +A
Sbjct: 11 IPPNPT-YVHNLEERVKIDELKEALTAIFSEYGTILEIVAKKNLKAKGQAFIVFDNVESA 69
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGS----------FVPREKKKKQEE-K 113
A+ ++ F KPM + +AK++SD V +E GS +E+K QE +
Sbjct: 70 QRAIEEVNGFDLLGKPMHLDFAKTRSDATVLREAGSEELEAHKRKRLAEKERKHAQEALE 129
Query: 114 AERKRR---------AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164
A++K + AE + + A GTG + T+A+ E PN ILF++ L
Sbjct: 130 AQKKLKRPAGVVPVPAEAGRPAKAARGTGLKP---TSAATTAVIPDEYLPPNKILFLREL 186
Query: 165 PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ-NP 223
P + S ML +F ++ GF+EVR++ + GIAFVE+E++ + A +A G + P P
Sbjct: 187 PEDADSDMLAGIFGRFEGFREVRLVPGRKGIAFVEYENEAGAISAKEATSGMPMGPNAKP 246
Query: 224 MAITFAKK 231
+ +T+ ++
Sbjct: 247 IRVTYQRQ 254
>gi|331231467|ref|XP_003328397.1| hypothetical protein PGTG_09691 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309307387|gb|EFP83978.1| hypothetical protein PGTG_09691 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 315
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 88/237 (37%), Positives = 137/237 (57%), Gaps = 15/237 (6%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
+T+Y+ NLNE++K LK++L L +G + DVVA ++ ++RGQA+V F + A+ AV
Sbjct: 79 ETVYLNNLNERVKLPALKQTLKNLLKNFGPVLDVVAHRSVRMRGQAFVAFPDREMAAKAV 138
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAK----EDGSFVPRE---KKKKQEEKAERKRRAEE 122
++++ FP Y KP+ I +A+S +DCV K +D E KKK+ + +++A E
Sbjct: 139 KEVKGFPLYGKPIEIAFARSPADCVVKRKTPDDFEAHKAERLLKKKRSRRENPLRKKAVE 198
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANT--------QETAAPNNILFIQNLPHETTSSMLE 174
A++++ + A S G A+S A++ E PN ILFIQNLP LE
Sbjct: 199 AKEAARKAASTAASAGPMASSVPPASSNRKIVQMPDEYQPPNKILFIQNLPENAGKDALE 258
Query: 175 MLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+LF+QYP EVR I + IAFVE+ D S +A AL +K ++ + +TFAK+
Sbjct: 259 VLFKQYPNLVEVRTIPGRSNIAFVEYVDATSSGVAKDALHNYKFDGEHKIKVTFAKQ 315
>gi|12851426|dbj|BAB29037.1| unnamed protein product [Mus musculus]
Length = 287
Score = 147 bits (371), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 68/118 (57%), Positives = 95/118 (80%), Gaps = 1/118 (0%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ + K+RGQA+V+F EVT+A+NA
Sbjct: 15 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNA 74
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQ 125
+R MQ FPFYDKPMRIQYAK+ SD +AK G++V R++K+ K++ K++ A++A Q
Sbjct: 75 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQ 132
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 211 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 270
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 271 GFKITQNNAMKISFAKK 287
>gi|399215899|emb|CCF72587.1| unnamed protein product [Babesia microti strain RI]
Length = 291
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 89/267 (33%), Positives = 146/267 (54%), Gaps = 42/267 (15%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DIPPN+TIYIKN+N+++K LK L +F+Q+G I +VA+ + RGQAW+VF + +
Sbjct: 27 DIPPNETIYIKNINDRVKLSVLKAYLEQIFNQFGTIRQIVAMGSFWRRGQAWIVFDSIDS 86
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV-----PREKKKKQEEKAERKRR 119
A+ A+ MQ + M+I +A +KSD VAKE G+FV P++ + +E +A++
Sbjct: 87 ATKALNAMQGHIYQGHAMQINFALAKSDIVAKEQGTFVERPPGPKKPRAVKEREAKQFEL 146
Query: 120 AEEAQQSSMANGTGAQSNGGTAASFRN--------ANTQETA------------------ 153
++ Q+S M + ++++ T N A ETA
Sbjct: 147 FQQMQKSFMESNLNSETSSATYQGIDNGLLMASAQARATETAINMSKLEMGDMSQYQPRT 206
Query: 154 ---------APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDV 204
P+ ILF++NLP + +++ LF Q PGF E R+I ++ +AFV+F+ +
Sbjct: 207 IQFQQHGPGVPHRILFVENLPPDVNPAIVSTLFGQRPGFIESRVIASR-CVAFVDFDSEQ 265
Query: 205 QSSMAMQALQGFKITPQNPMAITFAKK 231
+ +A++ALQG I N + I++AKK
Sbjct: 266 SAGLALKALQGHSILGNN-IYISYAKK 291
>gi|119478950|ref|XP_001259504.1| small nuclear ribonucleoprotein U)1a,U)2b [Neosartorya fischeri
NRRL 181]
gi|119407658|gb|EAW17607.1| small nuclear ribonucleoprotein U)1a,U)2b [Neosartorya fischeri
NRRL 181]
Length = 251
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 82/247 (33%), Positives = 138/247 (55%), Gaps = 21/247 (8%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
T +PPN T+Y++NL E+IK ++LK +L +FS+YG I D+VA K +GQA++VF V
Sbjct: 8 TSSLPPNPTVYVRNLEERIKIDQLKVALEEIFSEYGNIVDIVAKTNLKAKGQAFIVFDNV 67
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS-----------FVPREKKKKQE 111
+A+ A+ ++ F +DKPM + YAK++SD DG +E+K+ E
Sbjct: 68 ESATRAIEEVNGFELFDKPMVLDYAKTRSDATVLRDGGTEELEVHKRRRLAEKERKQAHE 127
Query: 112 E-KAERKRR-----AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLP 165
+A++K + A+ A+ + A G G + G AA+ E PN ILF+++LP
Sbjct: 128 ALEAQKKLKRPPGPADTARPAKAAKGAGLKPTSGAAAAV---IPDEYLPPNKILFLRDLP 184
Query: 166 HETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PM 224
L +F ++ GF+EVR++ + GIAFVE+E++ + A +A + P+
Sbjct: 185 DTADQESLTAIFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATANMPMGDNGKPI 244
Query: 225 AITFAKK 231
+T+ ++
Sbjct: 245 RVTYQRQ 251
>gi|148687025|gb|EDL18972.1| mCG119436 [Mus musculus]
Length = 170
Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 95/122 (77%), Gaps = 1/122 (0%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TIYI NLNEKIKK+ELK+SLY FSQ+G+I D++ ++ K+R QA+V+F EVT+A+NA
Sbjct: 12 NHTIYINNLNEKIKKDELKKSLYAFFSQFGQILDILVSRSLKMRSQAFVIFKEVTSATNA 71
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK-KKQEEKAERKRRAEEAQQSS 127
+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K +K++ K++ A++A Q
Sbjct: 72 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMTGTFVERDRKGEKRKPKSQETPAAKKAVQGG 131
Query: 128 MA 129
A
Sbjct: 132 AA 133
>gi|221054978|ref|XP_002258628.1| Small nuclear ribonucleoprotein (SnRNP) [Plasmodium knowlesi strain
H]
gi|193808697|emb|CAQ39400.1| Small nuclear ribonucleoprotein (SnRNP),putative [Plasmodium
knowlesi strain H]
Length = 192
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 121/225 (53%), Gaps = 38/225 (16%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DIPPNQT+Y+ NL EKI +L+ L+ F YG + D+V K + RGQA+VVF+ + +
Sbjct: 5 DIPPNQTLYVNNLEEKINVNDLRDLLFEYFCPYGNVLDIVIKKANQSRGQAFVVFNNIAS 64
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++ A + ++ F +K + I YAK+KS V K DG++ P K
Sbjct: 65 STLAYKNLKGKLFLNKQININYAKTKSRIVEKLDGTYKPITNYKS--------------- 109
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
A G G++ N T LF+QNLP+E + LE+LF QYPGF
Sbjct: 110 ----ATGHGSRINVFT------------------LFVQNLPNEINKNALEILFNQYPGFC 147
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
EVR I + +AFV+F +AM LQ FK+TPQ+P+ I+++
Sbjct: 148 EVRHIPGR-NVAFVDFSSYQNGEVAMNGLQNFKVTPQHPIKISWS 191
>gi|261191117|ref|XP_002621967.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239591011|gb|EEQ73592.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis
SLH14081]
gi|239613076|gb|EEQ90063.1| U1 small nuclear ribonucleoprotein [Ajellomyces dermatitidis ER-3]
Length = 253
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 133/246 (54%), Gaps = 23/246 (9%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
I PN T+Y++NL E+IK E LK +L +FS+YG I D+VA K +GQA++VF V +A
Sbjct: 11 IAPNSTVYVRNLEERIKVEPLKEALAEIFSEYGNIIDIVAKTNLKAKGQAFIVFDNVDSA 70
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAE--- 121
+ A+ ++ F ++KPM + YA+++SD V KE G K+K+ + ERK+ E
Sbjct: 71 TRAIEEINGFELFEKPMVLDYARTRSDAIVLKEHGETELEAHKRKRLAEKERKQAQEALE 130
Query: 122 ---------------EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH 166
EA+ S + G G + + TAA E PN ILF++ +P
Sbjct: 131 AQKKLKRGVAAPGGPEARPSKVTRGAGLKPSTATAAPVIQ---DEYLPPNKILFLREIPD 187
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMA 225
L +F ++ GFKEVRM+ + GIAFVE+E + + A +A G + P+
Sbjct: 188 SLDQDGLTEIFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGENGKPIR 247
Query: 226 ITFAKK 231
+TF ++
Sbjct: 248 VTFQRQ 253
>gi|213510744|ref|NP_001134742.1| U1 small nuclear ribonucleoprotein A [Salmo salar]
gi|209735590|gb|ACI68664.1| U1 small nuclear ribonucleoprotein A [Salmo salar]
Length = 281
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 66/115 (57%), Positives = 89/115 (77%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M D+ N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F
Sbjct: 1 MAAPDMRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARSLKMRGQAFVIFK 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE 115
EV +ASNA+R MQ FPFYDKPMRI YAK SD +AK G++V R++KK++ K +
Sbjct: 61 EVNSASNALRSMQGFPFYDKPMRIGYAKGDSDIIAKMKGTYVERDRKKEKRAKVK 115
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 59/77 (76%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF++DVQ+ A +ALQ
Sbjct: 205 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNDVQAGAAREALQ 264
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 265 GFKITQTNAMKISFAKK 281
>gi|58262246|ref|XP_568533.1| RNA binding protein [Cryptococcus neoformans var. neoformans JEC21]
gi|134118674|ref|XP_771840.1| hypothetical protein CNBN0220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50254444|gb|EAL17193.1| hypothetical protein CNBN0220 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57230707|gb|AAW47016.1| RNA binding protein, putative [Cryptococcus neoformans var.
neoformans JEC21]
Length = 285
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 84/228 (36%), Positives = 132/228 (57%), Gaps = 6/228 (2%)
Query: 6 IPPN--QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
IP N +T+Y++NLNEK++ +K +LY LF Y + ++A ++RGQA+V FS++
Sbjct: 53 IPDNACETLYLQNLNEKVRIPVMKETLYNLFKPYRPLQPIIAHHNIRMRGQAFVSFSDIE 112
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS---FVPREKKKKQEEKAERKRRA 120
+A+ A + + FP Y K ++I++AK SD + K G F K++ +E+K +RK
Sbjct: 113 SANEARKDVNEFPLYGKSIQIKFAKGLSDSIVKRKGDEKEFEEHTKRRLEEKKLKRKNNP 172
Query: 121 -EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQ 179
+ Q+ + T A + G A R E PN++LF+QNLP TTS L +F+
Sbjct: 173 LRQKAQAKLRADTTAGTAGPAAKKQRLQMPDEYLPPNSVLFVQNLPDGTTSEDLREVFEV 232
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227
+PG E+R I AK IAFVEF D+ +++A AL FKI + M ++
Sbjct: 233 HPGLIEIRTIPAKKDIAFVEFADEGAATIAKDALHNFKIDGETKMKVS 280
>gi|295670367|ref|XP_002795731.1| U2 small nuclear ribonucleoprotein B [Paracoccidioides sp. 'lutzii'
Pb01]
gi|226284816|gb|EEH40382.1| U2 small nuclear ribonucleoprotein B [Paracoccidioides sp. 'lutzii'
Pb01]
Length = 253
Score = 146 bits (369), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 86/246 (34%), Positives = 133/246 (54%), Gaps = 23/246 (9%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN T+Y++NL E+IK E LK +L +FS+YG I D+VA K +GQA++VF V +A
Sbjct: 11 IPPNSTVYVQNLEERIKVEALKEALTEIFSEYGNIIDLVAKTNLKAKGQAFIVFDNVDSA 70
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAE--- 121
+ A+ ++ F ++KPM + YAK++SD V KE G K+++ + ERK+ E
Sbjct: 71 TRAIEEINGFELFEKPMVLDYAKTRSDATVLKEQGEGELEAHKRRRLAEKERKQAQEALE 130
Query: 122 ---------------EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH 166
EA+ S A G G + + AA E PN ILF++ +P
Sbjct: 131 AQKKLKRGVVAPGGAEARPSKAAKGAGLKPSNAAAAPV---IPDEYLPPNKILFLREIPD 187
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMA 225
L +F ++ GFKEVRM+ + GIAFVE+E + + A +A G + P+
Sbjct: 188 SLDQDGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGENGKPIR 247
Query: 226 ITFAKK 231
+T+ ++
Sbjct: 248 VTYQRQ 253
>gi|395330403|gb|EJF62786.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 270
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 90/264 (34%), Positives = 140/264 (53%), Gaps = 43/264 (16%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN T+Y+KNLN+K+KK+EL+ L+ LF+ YGRI DVVALK PK++GQA+VVF+++ A+
Sbjct: 6 PNTTLYLKNLNDKVKKDELRAQLFALFTTYGRILDVVALKGPKMKGQAFVVFTDLAGATA 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS-DCVAKEDGSFVP----------------------R 104
A+R + FYDKPM I+YAK+KS + +ED FVP R
Sbjct: 66 ALRGCEGMVFYDKPMHIEYAKTKSYATLRREDPDFVPPTSIYVKNAPNGKLANGGAGEKR 125
Query: 105 EKKKKQEEKAERKRR---------AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAP 155
+ + +E A +R ++ + + G + G T S + Q AA
Sbjct: 126 TRDDRMDEDAREVKRERTDKDDEDDDDEEMEIEDDDEGPRQGGSTNGSRQCDAGQIPAAT 185
Query: 156 ---NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--------KPGIAFVEFEDDV 204
+ L NLP E T +L +LFQQY GF V+++ + + +A+V F+
Sbjct: 186 QQQSARLMCLNLPQEVTDDVLSVLFQQYQGFHSVQVVPSPTPNAAGQRVKMAYVMFDSPD 245
Query: 205 QSSMAMQALQGFKITPQNPMAITF 228
+S+A +AL GF + M++++
Sbjct: 246 LASVAKEALDGFTLKKGWVMSVSY 269
>gi|225561807|gb|EEH10087.1| small nuclear ribonucleoprotein U [Ajellomyces capsulatus G186AR]
Length = 249
Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust.
Identities = 86/239 (35%), Positives = 132/239 (55%), Gaps = 19/239 (7%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+ PN TIY++NL E+IK E LK +L +FS+YG I D+VA K +GQA+VVF V +A
Sbjct: 11 VAPNSTIYVRNLEERIKIESLKEALTEIFSEYGNIIDIVAKTNLKAKGQAFVVFDNVDSA 70
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDG-SFVPREKKKKQEEKAERKRRAE-- 121
+ A+ ++ F ++KPM + YAK++SD V KE G + + K+K+ EKA+ A+
Sbjct: 71 TRAIEEINGFELFEKPMVLDYAKTRSDATVLKEQGEAELEAHKRKRLAEKAQEALEAQKK 130
Query: 122 -----------EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTS 170
E + S + GTG + + AA E PN ILF++ +P
Sbjct: 131 LKRGAAAPGGAETRPSKVTRGTGLKPSNAAAAPV---IPDEYLPPNKILFLREIPDSLDQ 187
Query: 171 SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITF 228
L +F ++ GFKEVRM+ + GIAFVE+E + + A +A G + P+ +T+
Sbjct: 188 DGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGENGKPIRVTY 246
>gi|403417360|emb|CCM04060.1| predicted protein [Fibroporia radiculosa]
Length = 256
Score = 146 bits (368), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 85/250 (34%), Positives = 133/250 (53%), Gaps = 29/250 (11%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN T+Y+ NLN+K+ KEEL+ L+ LF+ YGR+ DVVA K PK+RGQA++VF+++T A+
Sbjct: 6 PNATLYVHNLNDKVNKEELRSQLFALFTTYGRVIDVVAAKGPKMRGQAFLVFADLTGATA 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS-DCVAKEDGSFVP--------------------REK 106
A+R + FYDKPMR++YAK+KS + +ED +FVP R+
Sbjct: 66 AMRACEGIVFYDKPMRVEYAKTKSYATLQREDPNFVPPMSVHTKNANAQAASSEKRQRDD 125
Query: 107 KKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH 166
+ ++E+A ++ RA + +G S A + + L NLP
Sbjct: 126 RMDEDERALKRERAADDDDDDEEMEIEDDDDGAKETSTGGAMPAIVQSQSARLLCTNLPQ 185
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEA-KPG-------IAFVEFEDDVQSSMAMQALQGFKI 218
E T +L +LFQQY GF+ + ++ P +A V F+ +S A +AL GF +
Sbjct: 186 EVTDDVLAVLFQQYQGFQSTHVAQSPTPNTAGQNVKMAQVIFDSPELASAAKEALDGFTL 245
Query: 219 TPQNPMAITF 228
M++ +
Sbjct: 246 KKGWVMSVAY 255
>gi|452838817|gb|EME40757.1| hypothetical protein DOTSEDRAFT_27368 [Dothistroma septosporum
NZE10]
Length = 234
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 86/237 (36%), Positives = 132/237 (55%), Gaps = 19/237 (8%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPN TIYIKNL+EK+K L+ +L F ++G I DVVA K + RGQA++VFS A
Sbjct: 5 PPNATIYIKNLDEKVKIPALEAALRDTFEEFGDIIDVVAKKNLRARGQAFIVFSSPEEAE 64
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRR------- 119
A+ +Q F +++PM IQYAK++SD ++ E+ KKQ AE++R+
Sbjct: 65 LALESLQGFEIFERPMDIQYAKTRSDATVQQVEGEAGLEQHKKQ-RIAEKERKQALAAAE 123
Query: 120 -----AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLE 174
A+ A S+A + G AN E PN IL ++ LP + L
Sbjct: 124 AQAKPAKRAAAESLAERPAKSTKPGPG-----ANQDEYLPPNKILLLRELPEDYGKEALT 178
Query: 175 MLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+FQ++PGFKEVR++ + G+AF E+ED+ S+ A +A+ G + + + +TF ++
Sbjct: 179 AVFQRFPGFKEVRVVPGRKGLAFAEYEDETGSTAAREAMNGVTLG-EKTIKVTFQRQ 234
>gi|387018110|gb|AFJ51173.1| U1 small nuclear ribonucleoprotein A [Crotalus adamanteus]
Length = 281
Score = 145 bits (367), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 66/116 (56%), Positives = 91/116 (78%), Gaps = 5/116 (4%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ + K+RGQA+V+F E+ +++NA
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKEICSSTNA 68
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
+R MQ FPFYDKPMRIQYAK SD +AK G+FV R++K+++ RK + +EAQ
Sbjct: 69 LRSMQGFPFYDKPMRIQYAKVDSDIIAKMKGTFVERDRKREK-----RKPKGQEAQ 119
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 205 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 264
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 265 GFKITQNNAMKISFAKK 281
>gi|315044563|ref|XP_003171657.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
gi|311344000|gb|EFR03203.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
Length = 256
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/249 (34%), Positives = 140/249 (56%), Gaps = 26/249 (10%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
I PN T+Y++NL E+IK ++LK +L +FS+YG I ++VA K +GQA++VF V +A
Sbjct: 11 ILPNPTVYVRNLEERIKIDQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVDSA 70
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERK--RRAEE 122
+ A+ ++ F ++KPM ++YAK++SD V +E G K+K+ + ERK + A E
Sbjct: 71 TRAIDEVNGFELFEKPMVLEYAKTRSDATVLREGGGEELEAHKRKRLAEKERKQAQDALE 130
Query: 123 AQQ-------------------SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQN 163
AQ+ + A G G + G AA E PN ILF+++
Sbjct: 131 AQKKLKRPAGAAGAAGGPDSRPAKAAKGAGLKPTGAAAAPV---IPDEYLPPNKILFLRD 187
Query: 164 LPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITP-QN 222
LP + L +F ++PGFKEVRM+ + GIAFVE++++ + A +A G + +
Sbjct: 188 LPETYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYDNESGAISAKEATSGMALGENEK 247
Query: 223 PMAITFAKK 231
P+ +T+ ++
Sbjct: 248 PIKVTYQRQ 256
>gi|156081688|ref|XP_001608337.1| U2 small nuclear ribonucleoprotein B'' [Plasmodium vivax Sal-1]
gi|148800908|gb|EDL42313.1| U2 small nuclear ribonucleoprotein B'', putative [Plasmodium vivax]
Length = 192
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 83/225 (36%), Positives = 122/225 (54%), Gaps = 38/225 (16%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DIPPNQT+Y+ NL EK+ ++L+ L+ F YG + DVV K + RGQA+VVF+ V +
Sbjct: 5 DIPPNQTLYVNNLEEKVNVQDLRDLLFEFFCPYGNVLDVVIKKANQSRGQAFVVFNTVAS 64
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++ A + ++ F +K + I YAK+KS + K +G++ K
Sbjct: 65 STLAYKHLKGKLFLNKHININYAKTKSRIIEKLEGTYKSITNYKS--------------- 109
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
A G G+++N T LF+QNLP+E S LE+LF QYPGF
Sbjct: 110 ----AAGLGSRANVFT------------------LFVQNLPNEINKSALEILFSQYPGFC 147
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
EVR I + +AFV+F +AM LQ FK+TPQ+PM I+++
Sbjct: 148 EVRHIPGR-NVAFVDFSSYQNGEVAMSGLQSFKVTPQHPMKISWS 191
>gi|347838217|emb|CCD52789.1| similar to u2 small nuclear ribonucleoprotein b'' [Botryotinia
fuckeliana]
Length = 252
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/235 (37%), Positives = 128/235 (54%), Gaps = 23/235 (9%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
+G PPN T+Y+ NL E IK L +L LFS+YG I ++VA K +GQA++VF +V
Sbjct: 8 SGSPPPNATLYVNNLEESIKPAALIEALTELFSEYGTILEIVAKTNLKAKGQAFIVFEDV 67
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPRE--KKKKQEEKAERKRRA 120
+A+ A+ +Q F + K MRI YAK++SD K +G E K+++ EK ERK+ A
Sbjct: 68 ESATKAIEDIQGFELFGKEMRIAYAKTRSDASVKREGGHEELEVHKRRRLAEK-ERKKAA 126
Query: 121 E----EAQQSSMAN-------------GTGAQSNGGTAASFRNANTQETAAPNNILFIQN 163
E ++AN G G +S+ AA+ E PN ILF+QN
Sbjct: 127 EITLRPTTGPALANPADLAARPIKATRGAGLKSSNPAAAAVV---PDEYLPPNKILFVQN 183
Query: 164 LPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
LP E ML +F ++ GF+EVR++ + GIAFVE+E + S A + G +
Sbjct: 184 LPEEYDVDMLTSIFGRFEGFREVRLVPGRKGIAFVEYETETGSIGAKENTAGMAL 238
>gi|226294088|gb|EEH49508.1| U2 small nuclear ribonucleoprotein B [Paracoccidioides brasiliensis
Pb18]
Length = 253
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/244 (34%), Positives = 135/244 (55%), Gaps = 19/244 (7%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN T+Y++NL E+IK E LK +L +FS+YG I D+VA K +GQA++VF V +A
Sbjct: 11 IPPNSTVYVQNLEERIKVEPLKEALTEIFSEYGNIIDIVAKTNLKAKGQAFIVFDNVDSA 70
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
+ A+ ++ F ++KPM + YAK++SD V KE G K+++ + ERK +A+EA
Sbjct: 71 TRAIEEINGFELFEKPMVLDYAKTRSDATVLKEQGEGELEAHKRRRLAEKERK-QAQEAL 129
Query: 125 QSSMANGTGAQSNGGT---------AASFRNANT-------QETAAPNNILFIQNLPHET 168
++ G + GG A + +N E PN ILF++ +P
Sbjct: 130 EAQKKLKRGVVAPGGAEARPSKAVKGAGLKPSNAAAAPVIPDEYLPPNKILFLREIPDSL 189
Query: 169 TSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAIT 227
L +F ++ GFKEVRM+ + GIAFVE+E + + A +A G + P+ +T
Sbjct: 190 DQDGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGENGMPIRVT 249
Query: 228 FAKK 231
+ ++
Sbjct: 250 YQRQ 253
>gi|317037176|ref|XP_001398705.2| U1 small nuclear ribonucleoprotein usp102 [Aspergillus niger CBS
513.88]
Length = 251
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 85/245 (34%), Positives = 138/245 (56%), Gaps = 22/245 (8%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN T+Y++NL E+IK ++LK +L +FS+YG + ++VA K +GQA+VVF V AA
Sbjct: 10 IPPNCTVYVRNLEERIKVDQLKEALEEIFSEYGTVLEIVAKTNLKAKGQAFVVFDTVEAA 69
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSD-CVAKEDGSFVPREKKKKQEEKAERKRRAE--E 122
+ A+ ++ F +DKPM + YAK++SD V +E G K+++ + ERK+ E E
Sbjct: 70 TRAIDEINGFELFDKPMVLDYAKTRSDMTVLREGGEDELEAHKRRRLAEKERKQAHEALE 129
Query: 123 AQQ---------------SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHE 167
AQ+ + A G G + G AA+ E PN ILF+++LP
Sbjct: 130 AQKKLKRPPGAPTEPGRPAKTAKGAGLKPTSGAAAAV---IPDEYLPPNKILFLRDLPDT 186
Query: 168 TTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAI 226
L +F ++ GF+EVR++ + GIAFVE+E++ + A +A G + P+ +
Sbjct: 187 ADQDSLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGEAGKPIRV 246
Query: 227 TFAKK 231
T+ ++
Sbjct: 247 TYQRQ 251
>gi|240275413|gb|EER38927.1| small nuclear ribonucleoprotein [Ajellomyces capsulatus H143]
gi|325091251|gb|EGC44561.1| small nuclear ribonucleoprotein U [Ajellomyces capsulatus H88]
Length = 253
Score = 145 bits (367), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 88/246 (35%), Positives = 134/246 (54%), Gaps = 23/246 (9%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+ PN TIY++NL E+IK E LK +L +FS+YG I D+VA K +GQA+VVF V +A
Sbjct: 11 VTPNSTIYVRNLEERIKIESLKEALTEIFSEYGNIIDIVAKTNLKAKGQAFVVFDNVDSA 70
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAE--E 122
+ A+ ++ F ++KPM + YAK++SD V KE G K+K+ + ERK+ E E
Sbjct: 71 TRAIEEINGFELFEKPMVLDYAKTRSDATVLKEQGEAELEAHKRKRLAEKERKQAQEALE 130
Query: 123 AQQ----------------SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH 166
AQ+ S + GTG + + AA E PN ILF++ +P
Sbjct: 131 AQKKLKRGAAAPGGAETRPSKVTRGTGLKPSNAAAAPV---IPDEYLPPNKILFLREIPD 187
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMA 225
L +F ++ GFKEVRM+ + GIAFVE+E + + A +A G + P+
Sbjct: 188 SLDQDGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGENGKPIR 247
Query: 226 ITFAKK 231
+T+ ++
Sbjct: 248 VTYQRQ 253
>gi|90103266|gb|ABD85478.1| small nuclear ribonucleoprotein polypeptide A [Ictalurus punctatus]
Length = 156
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 65/106 (61%), Positives = 85/106 (80%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M + D+ N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ +T K+RGQA+V+F
Sbjct: 1 MSSQDLRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTVKMRGQAFVIFK 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK 106
EV +ASNA+R MQ FPFYDKPMRIQYAK SD +AK G++V R++
Sbjct: 61 EVNSASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDR 106
>gi|425772063|gb|EKV10488.1| U1 small nuclear ribonucleoprotein, putative [Penicillium digitatum
Pd1]
gi|425777240|gb|EKV15421.1| U1 small nuclear ribonucleoprotein, putative [Penicillium digitatum
PHI26]
Length = 249
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 127/231 (54%), Gaps = 14/231 (6%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN T+Y+KNL+E+IK ++LK +L +FS+YG I +VVA K +GQA++VF V +A
Sbjct: 9 IPPNATVYVKNLDERIKIDQLKHALEEIFSEYGTILEVVAKTNLKAKGQAFIVFDNVDSA 68
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAER-------- 116
+ A+ + F ++KPM + YAK+ SD V +E GS K+++ + ER
Sbjct: 69 TRAIEDINGFDLFEKPMVLDYAKTPSDATVQREGGSDELEAHKRRRLAEKERKQAHEALE 128
Query: 117 -----KRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSS 171
KR A A+ S A T T A+ E PN ILF++ LP + T
Sbjct: 129 AQKKLKRPAAAAEPSRPAKTTKGAGLKPTTAATTAVVPDEYLPPNKILFLRELPDDATQE 188
Query: 172 MLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN 222
L +F ++ GF+EVR++ + GIAFVE+E + + A +A G + Q
Sbjct: 189 GLSAIFGRFEGFQEVRLVPGRKGIAFVEYEAEAGAISAKEATSGMPMGDQG 239
>gi|242023616|ref|XP_002432228.1| U2 small nuclear ribonucleoprotein B'', putative [Pediculus humanus
corporis]
gi|212517625|gb|EEB19490.1| U2 small nuclear ribonucleoprotein B'', putative [Pediculus humanus
corporis]
Length = 190
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 91/189 (48%), Positives = 119/189 (62%), Gaps = 14/189 (7%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLNEK+KK+ELK+SLY +FSQ+G+I D+VALKT +++GQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNLNEKLKKDELKKSLYAIFSQFGQILDIVALKTLRMKGQAFVIFKEINS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+ A+ MQ FPFYDKPMRIQY K+ SD +AK G++ R KK K+ R+ E+ +
Sbjct: 62 ATKALMSMQGFPFYDKPMRIQYCKTDSDIIAKMKGTYSERPKKPKKPAPVAREEDPEKKK 121
Query: 125 QSSMAN------GTGAQSNGGTA---ASFRNANTQETA-----APNNILFIQNLPHETTS 170
AN G G G A A+ +N Q PN ILF+ NLP ET+
Sbjct: 122 AKKNANKIDGRLGMGFDGLHGMAQYNAAAMLSNLQGVGPVPEQPPNQILFLTNLPDETSE 181
Query: 171 SMLEMLFQQ 179
ML MLF Q
Sbjct: 182 MMLSMLFNQ 190
>gi|432890232|ref|XP_004075429.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 1
[Oryzias latipes]
gi|432890234|ref|XP_004075430.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 2
[Oryzias latipes]
Length = 272
Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 62/102 (60%), Positives = 84/102 (82%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M T ++ PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ +T K++GQA+V+F
Sbjct: 1 MTTPEVRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTLKMKGQAFVIFK 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
E+ +ASNA+R MQ FPFYDKPMRIQY+K+ SD +AK G++V
Sbjct: 61 EINSASNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTYV 102
Score = 96.3 bits (238), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A +LQ
Sbjct: 196 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDSLQ 255
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT + M I+FAKK
Sbjct: 256 GFKITQTHAMKISFAKK 272
>gi|410909848|ref|XP_003968402.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like isoform 2
[Takifugu rubripes]
Length = 279
Score = 145 bits (365), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 72/141 (51%), Positives = 102/141 (72%), Gaps = 5/141 (3%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M T ++ N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ +T K++GQA+V+F
Sbjct: 1 MTTPEVRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARTMKMKGQAFVIFK 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQE-----EKAE 115
EV +ASNA+R MQ FPFYDKPMRIQYAK SD +AK G++V R++KK+++ + +
Sbjct: 61 EVNSASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDRKKEKKKVKAPDSSG 120
Query: 116 RKRRAEEAQQSSMANGTGAQS 136
K+ A+ A S +A G +
Sbjct: 121 SKKNAQGAAASMVAGVPGGMA 141
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 203 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 262
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 263 GFKITQSNAMKISFAKK 279
>gi|3659937|pdb|1A9N|B Chain B, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
gi|3659938|pdb|1A9N|D Chain D, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
Complex Bound To A Fragment Of U2 Small Nuclear Rna
Length = 96
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 63/95 (66%), Positives = 80/95 (84%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDG 99
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRG 96
>gi|377835922|ref|XP_003688944.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Mus musculus]
Length = 309
Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 68/122 (55%), Positives = 93/122 (76%), Gaps = 1/122 (0%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQ +V+F EVT A+NA
Sbjct: 12 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSQSLKMRGQVFVIFKEVTIATNA 71
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPRE-KKKKQEEKAERKRRAEEAQQSS 127
+R M FPFYDKPMRIQYAK+ SD +AK G+FV R+ K +K++ K++ A++A Q
Sbjct: 72 LRSMLGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDYKGEKRKPKSQETPAAKKAVQGG 131
Query: 128 MA 129
A
Sbjct: 132 AA 133
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+ GFKE ++ + IAFVEF+++VQ+ A+ ALQ
Sbjct: 208 PNHILFLTNLPEETNELMLSMLFTQFRGFKEAGLVPGRLDIAFVEFDNEVQAGAALDALQ 267
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+F KK
Sbjct: 268 GFKITQNNAMKISFVKK 284
>gi|340960349|gb|EGS21530.1| hypothetical protein CTHT_0033900 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 250
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 79/231 (34%), Positives = 127/231 (54%), Gaps = 16/231 (6%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
G PP T+Y++NL E++K ++LK +LY +FS+YG + D+VA K +GQA++VF +
Sbjct: 6 GQQPPIATVYVRNLEERVKVDKLKEALYTIFSEYGNVIDIVAKTNLKAKGQAFIVFDKPE 65
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQE-EKAERKRRAEE 122
A AV ++Q F ++KPM++ A+++SD + S E K+ + ERK+ AE
Sbjct: 66 PALTAVEELQGFELFEKPMQVALARTRSDATVQRYCSEEEFEAHKRHRMAEKERKKAAEA 125
Query: 123 AQQSSMAN---GTGAQSNGGTAASFRNANTQETA------------APNNILFIQNLPHE 167
+Q + G+G ++ A S R + TA PN ILF+QNLP +
Sbjct: 126 EEQKRLKRPIPGSGVEAGARPAKSARGPGLKSTAPGAAPVVPDEYLPPNRILFVQNLPDD 185
Query: 168 TTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
L +F ++ GF+EVRM+ + GIAFVE+E + + A + G +
Sbjct: 186 FDKDALTAIFGRFEGFREVRMVPGRSGIAFVEYESEAGAITAKENTAGMPL 236
>gi|409050372|gb|EKM59849.1| hypothetical protein PHACADRAFT_181793 [Phanerochaete carnosa
HHB-10118-sp]
Length = 258
Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 89/252 (35%), Positives = 125/252 (49%), Gaps = 31/252 (12%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+YIKNLN+K+ KEELK L+ LF+ YGR+ DVVALKT K+RGQA+VVF ++ A+
Sbjct: 6 PQATLYIKNLNDKVNKEELKHQLHALFTTYGRVIDVVALKTQKMRGQAFVVFGDLAGATA 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS-DCVAKEDGSFVP----------------------R 104
A+R + FYDKPM I+YAK KS + K+D +FVP R
Sbjct: 66 ALRACEGLDFYDKPMHIEYAKQKSYATMKKDDPNFVPPASIHARETATRLGNGILSGEKR 125
Query: 105 EKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164
+ K +E +R + GT +A P+ L NL
Sbjct: 126 GRDDKMDEDVRESKRERVDEDDGEEMEIEDDEETGTKDKTSSAVPPVLQQPSAKLLCTNL 185
Query: 165 PHETTSSMLEMLFQQYPGFKEVRMIEA--------KPGIAFVEFEDDVQSSMAMQALQGF 216
P E T +L +LFQQY GF ++ + K +A V F+ +S+A +AL GF
Sbjct: 186 PIEVTDDVLSVLFQQYQGFMSTNVVPSPTPNASGQKCKMAQVLFDSPGMASVAKEALNGF 245
Query: 217 KITPQNPMAITF 228
+ M++ F
Sbjct: 246 ALKQGWVMSVNF 257
>gi|212529316|ref|XP_002144815.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
gi|210074213|gb|EEA28300.1| U1 small nuclear ribonucleoprotein, putative [Talaromyces marneffei
ATCC 18224]
Length = 253
Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 84/246 (34%), Positives = 139/246 (56%), Gaps = 25/246 (10%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPN T Y+ NL E++K ++LK +L +FS+YG I ++VA K K +GQA++VF V +A
Sbjct: 12 PPNPT-YVHNLEERVKIDDLKEALTEIFSEYGTILEIVAKKNLKAKGQAFIVFDNVESAQ 70
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGS----------FVPREKKKKQEE-KA 114
A+ ++ F KPM + +AK++SD V +E GS +E+K+ QE +A
Sbjct: 71 RAIEEVNGFDLLGKPMSLDFAKTRSDATVLREGGSDELEVHKRKRLAEKERKQAQEALEA 130
Query: 115 ERKRR--------AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH 166
++K + AE + + A GTG + G A + E PN ILF++ LP
Sbjct: 131 QKKLKRPAGVPVPAEAGRPAKAARGTGLKPTTGAATAV---VPDEYLPPNKILFLRELPE 187
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ-NPMA 225
+ + ML +F ++ GF+EVR++ + GIAFVE+E++ + A +A G + P P+
Sbjct: 188 DADADMLTSIFGRFEGFREVRLVPGRKGIAFVEYENETGAISAKEATSGMPMGPNAKPIR 247
Query: 226 ITFAKK 231
+T+ ++
Sbjct: 248 VTYQRQ 253
>gi|328854301|gb|EGG03434.1| hypothetical protein MELLADRAFT_109264 [Melampsora larici-populina
98AG31]
Length = 364
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 92/267 (34%), Positives = 135/267 (50%), Gaps = 42/267 (15%)
Query: 4 GDIPP---NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
GD P +T+Y+ NLNEK+K LK++L L +G + DVVA ++ ++RGQA+V F
Sbjct: 101 GDTIPEDATETVYLNNLNEKVKIPILKQTLKNLLKNFGPVLDVVAHQSVRMRGQAFVAFP 160
Query: 61 EVTAASNAVRQMQNFPFYDKPMR--------------IQYAKSKSDCVAKEDGSFVPREK 106
E A+ AV++++ FP Y KP R I +A++ +D V K P E
Sbjct: 161 EREMAAKAVKEVKGFPLYGKPYRTLLRLLYYATSSYEIAFARTPADAVVKRK---TPDEY 217
Query: 107 KKKQEEKAERKRR-----------------AEEAQQSSMANGTGAQSNGGTAASFRNANT 149
+EE+ +K+R A A +S++A G A + TAAS +
Sbjct: 218 DTFKEERLTKKKRSRRENPLRKKAFAQKEAARIAAESAIAAGGVAPTTSATAASTNSGRR 277
Query: 150 -----QETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDV 204
E PN ILF+QNLP LE+LF+QY EVR I + IAFVE+ D
Sbjct: 278 IVQMPDEYQPPNKILFVQNLPENAGKDALEVLFKQYANLVEVRTIPGRATIAFVEYTDAT 337
Query: 205 QSSMAMQALQGFKITPQNPMAITFAKK 231
S +A AL +K ++ + +TFAK+
Sbjct: 338 SSGVAKDALHNYKFDGEHKIKVTFAKQ 364
>gi|389583186|dbj|GAB65922.1| U2 small nuclear ribonucleoprotein B'' [Plasmodium cynomolgi strain
B]
Length = 262
Score = 144 bits (362), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 84/225 (37%), Positives = 122/225 (54%), Gaps = 37/225 (16%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DIPPNQT+Y+ NL EKI ++L+ L+ F YG + DVV K + RGQA+VVF+ + +
Sbjct: 74 DIPPNQTLYVNNLEEKINVKDLRDLLFEFFCPYGNVLDVVIKKANQSRGQAFVVFNTIAS 133
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++ A + ++ F +K + I YAK+KS V K +G++ P
Sbjct: 134 STLAYKNLKGKLFLNKQININYAKTKSRIVEKLEGTYKPI-------------------- 173
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
T +S G +S N T LFIQNLP+E + LE+LF QYPGF
Sbjct: 174 -------TNYKSETGYGSSTANVFT---------LFIQNLPNEINKNALEILFNQYPGFC 217
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
EVR I + +AFV+F +AM LQ FK+TPQ+P+ I+++
Sbjct: 218 EVRHIPGR-NVAFVDFSSYQNGEVAMNGLQSFKVTPQHPIKISWS 261
>gi|342321005|gb|EGU12943.1| RNA binding protein [Rhodotorula glutinis ATCC 204091]
Length = 298
Score = 143 bits (360), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 86/225 (38%), Positives = 124/225 (55%), Gaps = 11/225 (4%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP ++ +Y+ NLNEKIK + +K+SL LF +YGR+ V A + ++RGQA+V
Sbjct: 50 LPPGASEVLYVNNLNEKIKLDIMKQSLKVLFREYGRVLGVTAHRNVRMRGQAFVTLDSKE 109
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAEE 122
AA AV+++Q FP Y KPM++ +A+++SD V K + KK + E K + +R
Sbjct: 110 AAVKAVKEVQKFPLYGKPMQLTFARTESDALVQKRHPDDMEAHKKARLERKKQSRRDDPA 169
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQ--------ETAAPNNILFIQNLPHETTSSMLE 174
++ A Q+ AA A TQ E PN ILF+QNLP +TT LE
Sbjct: 170 RRKKLAAKAAAKQAAETGAAPVAAAPTQRRIVQMPDEYLPPNKILFVQNLPDDTTKEGLE 229
Query: 175 MLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIT 219
LF+ +P EVR I + IAFVEF D+ S +A AL K +
Sbjct: 230 ALFRPFPNLVEVRTIPGRKNIAFVEFADEQSSGVARDALHNTKFS 274
>gi|47225009|emb|CAF97424.1| unnamed protein product [Tetraodon nigroviridis]
Length = 272
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 63/106 (59%), Positives = 84/106 (79%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M T ++ N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ + K++GQA+V+F
Sbjct: 1 MTTPEVRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMKGQAFVIFK 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK 106
EV +ASNA+R MQ FPFYDKPMRIQYAK SD +AK G++V R++
Sbjct: 61 EVNSASNALRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDR 106
Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 60/77 (77%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ++ A +ALQ
Sbjct: 196 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAAAAREALQ 255
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 256 GFKITQTNAMKISFAKK 272
>gi|295314954|gb|ADF97627.1| small nuclear ribonucleoprotein polypeptide A [Hypophthalmichthys
molitrix]
Length = 281
Score = 142 bits (359), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 62/98 (63%), Positives = 80/98 (81%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ T K+RGQA+V+F E+ +ASNA
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSPTLKMRGQAFVIFKEINSASNA 68
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK 106
+R MQ FPFYDKPMRIQYAK SD +AK G++V R++
Sbjct: 69 LRSMQGFPFYDKPMRIQYAKQDSDIIAKMKGTYVERDR 106
Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 59/77 (76%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A +ALQ
Sbjct: 205 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQ 264
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 265 GFKITQSNAMKISFAKK 281
>gi|41054443|ref|NP_955965.1| U1 small nuclear ribonucleoprotein A [Danio rerio]
gi|39850066|gb|AAH64308.1| Small nuclear ribonucleoprotein polypeptide A [Danio rerio]
Length = 281
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 61/98 (62%), Positives = 81/98 (82%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ +T K++GQA+V+F E+ +ASNA
Sbjct: 9 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRTLKMKGQAFVIFKEINSASNA 68
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK 106
+R MQ FPFYDKPMRIQY+K SD +AK G+FV R++
Sbjct: 69 LRSMQGFPFYDKPMRIQYSKQDSDIIAKMKGTFVERDR 106
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 59/77 (76%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A +ALQ
Sbjct: 205 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAAREALQ 264
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 265 GFKITQSNAMKISFAKK 281
>gi|428671090|gb|EKX72009.1| U1 snRNP protein, putative [Babesia equi]
Length = 294
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 90/269 (33%), Positives = 143/269 (53%), Gaps = 46/269 (17%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPNQT+YIKNLN+++K + LK L LFS+YG I D+VA+ + +GQAW++++++ +A
Sbjct: 27 IPPNQTLYIKNLNDRVKLDVLKGDLQDLFSKYGTILDIVAMSSFWRKGQAWIIYNDIESA 86
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ----EEKAERKRRAE 121
A+ ++Q ++ M I +A KSD ++K DG+F REK K+ +E+ E++R
Sbjct: 87 KKAMEELQGHMYHGHAMHINFALEKSDLISKADGTFKEREKGPKKPRAIKEREEKQRLLF 146
Query: 122 EAQQSSMANGT-------------GAQSNGGTAA---------------------SFRNA 147
+ Q G +Q N TA S + A
Sbjct: 147 KEMQRDFITGNLDGMAHAIPHQDGVSQFNPETAKALAAAQARAAELALASKRAIQSAKGA 206
Query: 148 NTQETAA------PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFE 201
N Q PN LF+++LP T++ + LF + PG+ E R+I A+ +AFV+F+
Sbjct: 207 NAQRRGGFSAPVIPNRTLFVESLPEGVTTNDVISLFCRMPGYIEARVIPARK-VAFVDFD 265
Query: 202 DDVQSSMAMQALQGFKITPQNPMAITFAK 230
+D+ S AMQ LQG I ++I++AK
Sbjct: 266 NDMNSGYAMQTLQGQTIN-GTMISISYAK 293
>gi|348534739|ref|XP_003454859.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like [Oreochromis
niloticus]
Length = 282
Score = 142 bits (358), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 62/106 (58%), Positives = 85/106 (80%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M T ++ N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ + K++GQA+V+F
Sbjct: 1 MATPEVRLNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVARNIKMKGQAFVIFK 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK 106
E+ +ASNA+R MQ FPFYDKPMRIQYAK+ SD +AK G++V R++
Sbjct: 61 EINSASNALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDR 106
Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEFE++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQTNAMKISFAKK 282
>gi|388855173|emb|CCF51304.1| related to small nuclear ribonucleoprotein snRNP U1A [Ustilago
hordei]
Length = 297
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 93/249 (37%), Positives = 127/249 (51%), Gaps = 23/249 (9%)
Query: 5 DIPP------NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVV 58
D PP +QT+YI+NLNEK+K E +K +L+ LFS YG + VV+ ++RGQA+V
Sbjct: 48 DEPPPLPADASQTLYIQNLNEKVKLETMKATLHNLFSNYGTVLSVVSHTNLRMRGQAFVS 107
Query: 59 FSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCV----AKEDGSFVPREKKKKQEEKA 114
V AA A R+ FP Y K M+I +AKSKSD V KE+G K +EE+
Sbjct: 108 LDNVQAADKARREAHLFPLYGKAMKISFAKSKSDAVVLQKVKEEGGKESELFKTHKEERL 167
Query: 115 ERK----------RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQ---ETAAPNNILFI 161
E K RR E + + G + AA+ + A + E PN LF+
Sbjct: 168 EHKKMARRGNVLRRRELEKKIRAKRAAAGEIAEPEKAAANKRAQQEMPDEYLPPNKTLFL 227
Query: 162 QNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ 221
QN+P LE LF Y G+ +V+ I K IAFVE+ D S A AL G+
Sbjct: 228 QNIPDGVGKGELESLFSAYSGYVDVQTIPGKADIAFVEYADIPSSVTARGALNGYNFGAG 287
Query: 222 NPMAITFAK 230
+ + ITFA+
Sbjct: 288 DKLKITFAR 296
>gi|156049745|ref|XP_001590839.1| hypothetical protein SS1G_08579 [Sclerotinia sclerotiorum 1980]
gi|154692978|gb|EDN92716.1| hypothetical protein SS1G_08579 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 257
Score = 142 bits (357), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 84/239 (35%), Positives = 125/239 (52%), Gaps = 26/239 (10%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
+G PPN T+YI NL E +K L +L LFS+YG I +++A K +GQA++VF V
Sbjct: 8 SGSPPPNATLYINNLEETVKIPALIEALTELFSEYGTILEIIAKTNLKAKGQAFIVFENV 67
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
+A+ A+ +Q F + K MRI YAK++SD K +G E K++ + K++A E
Sbjct: 68 ESATKAIEDIQGFELFGKEMRIAYAKTRSDASVKREGGEEEYETHKRRRLAEKDKKKAAE 127
Query: 123 AQQSS----------MAN-------------GTGAQSNGGTAASFRNANTQETAAPNNIL 159
S+ +AN G G +S+ AA+ E PN IL
Sbjct: 128 LASSNTLKRPSAGAPLANPADLAARPIKATRGAGLKSSNPAAAAVV---PDEYLPPNKIL 184
Query: 160 FIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
F+QNLP E ML +F ++ GF+EVR++ + GIAFVE+E + S A + G +
Sbjct: 185 FVQNLPEEYDVDMLTSIFGRFEGFREVRLVPGRKGIAFVEYETETGSIGAKENTAGMTL 243
>gi|71030602|ref|XP_764943.1| U2 small nuclear ribonucleoprotein B [Theileria parva strain
Muguga]
gi|68351899|gb|EAN32660.1| U2 small nuclear ribonucleoprotein B, putative [Theileria parva]
Length = 206
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 28/227 (12%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
T DI P QT+Y+ NLN++I E LK+ LY LF YG I D+VA +T LRGQA+VVFSE+
Sbjct: 7 TVDILPCQTLYVYNLNDQIHVEVLKKLLYELFVPYGIIVDIVARRTKTLRGQAFVVFSEI 66
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
++A+ A++ + +K ++I+YAK++S + K K + RA+
Sbjct: 67 SSATAALKGLNGRKVLNKVLKIEYAKNRS-----------YKTLKPSDYYKMSKANRAKL 115
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
S + R++ T E+ A LF+QN+PH+ + LE+LF+QYPG
Sbjct: 116 KHVSDLPE------------DLRSSLTDESHA----LFVQNIPHDMSKESLELLFKQYPG 159
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
F+ R IE + +AFV++ Q+ +A++ L GF+++ + + I+ A
Sbjct: 160 FRGCRFIEGR-FVAFVDYSMASQAEIALEGLNGFRVSHTHALQISLA 205
>gi|321265410|ref|XP_003197421.1| RNA binding protein [Cryptococcus gattii WM276]
gi|317463901|gb|ADV25634.1| RNA binding protein, putative [Cryptococcus gattii WM276]
Length = 286
Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 80/227 (35%), Positives = 129/227 (56%), Gaps = 6/227 (2%)
Query: 6 IPPN--QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+P N +T+Y++NLNEK++ +K +LY LF Y + ++A ++RGQA++ F ++
Sbjct: 53 VPDNACETLYLQNLNEKVRIPVMKETLYNLFKPYRPLQPIIAHHNIRMRGQAFISFPDIE 112
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS---FVPREKKKKQEEKAERKRRA 120
+A+ A + + FP Y K ++I++AK SD + K G F +++ +E+K +RK
Sbjct: 113 SANEARKDVNEFPLYGKSVQIKFAKGLSDSIVKRKGDEKEFEEHTRRRLEEKKLKRKNNP 172
Query: 121 -EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQ 179
+ Q + T A + G A R E PN++LF+QNLP TTS L +F+
Sbjct: 173 LRQKAQEKLRADTTAGTTGPAAKKQRLQMPDEYLPPNSVLFVQNLPDGTTSEDLREVFEV 232
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226
+PG E+R I AK IAFVEF D+ +++A AL FKI + M +
Sbjct: 233 HPGLIEIRTIPAKKDIAFVEFADEGAATVAKDALHNFKIDGETKMKV 279
>gi|428171290|gb|EKX40208.1| hypothetical protein GUITHDRAFT_75811, partial [Guillardia theta
CCMP2712]
Length = 209
Score = 141 bits (355), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 87/222 (39%), Positives = 124/222 (55%), Gaps = 30/222 (13%)
Query: 5 DIPPNQTIYIKNLNEKIKK----EELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
++PPNQT+YI+N+NEK K EELK L +F YG I D+VA+ +GQA+VVF
Sbjct: 4 ELPPNQTLYIRNINEKYSKKFRLEELKAKLKAIFRPYGEILDIVAMSNFYNKGQAFVVFK 63
Query: 61 E-VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRR 119
+ T + +V K M+I+YA+SKSD +AK +G+F + R +
Sbjct: 64 DGHTLSLTSVGG-------GKEMKIKYARSKSDVIAKLEGTF-----------EVRRGDQ 105
Query: 120 AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAA-------PNNILFIQNLPHETTSSM 172
+E + G G A S +N + A P+ ILF++NLP + TS
Sbjct: 106 MDEDDEDGGDKSKGNAHGGWQAPSGQNQKSAPPAPVHTGPLFPHPILFLENLPLDITSDD 165
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
+ +F +PGFKEVR++ ++PGIAFVE+E DVQS MAM LQ
Sbjct: 166 VAAVFSPFPGFKEVRLVPSRPGIAFVEYESDVQSGMAMARLQ 207
>gi|298707794|emb|CBJ30225.1| RNA binding / nucleic acid binding [Ectocarpus siliculosus]
Length = 252
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 62/100 (62%), Positives = 84/100 (84%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TIY+ NLNEKIKK LK+SL+ +FSQ+G+I D+VA + KL+GQAWVVF+E + A+NA
Sbjct: 8 NHTIYVSNLNEKIKKPLLKKSLHSVFSQFGKIVDIVACRGLKLKGQAWVVFAEKSMATNA 67
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK 108
+RQMQ FPF++K MRIQ+AKS+SD V K+ G++VPR+K+K
Sbjct: 68 LRQMQGFPFFEKKMRIQFAKSESDVVTKKAGTYVPRDKRK 107
>gi|2982060|pdb|1AUD|A Chain A, U1a-Utrrna, Nmr, 31 Structures
gi|157874113|pdb|1DZ5|A Chain A, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
gi|157874114|pdb|1DZ5|B Chain B, The Nmr Structure Of The 38kda U1a Protein-Pie Rna Complex
Reveals The Basis Of Cooperativity In Regulation Of
Polyadenylation By Human U1a Protein
Length = 101
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 60/95 (63%), Positives = 81/95 (85%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SL+ +FS++G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 66
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV
Sbjct: 67 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFV 101
>gi|255953987|ref|XP_002567746.1| Pc21g07040 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211589457|emb|CAP95601.1| Pc21g07040 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 249
Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 81/234 (34%), Positives = 129/234 (55%), Gaps = 20/234 (8%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN T+Y+KNL+E+IK ++LK +L +FS+YG I ++VA K +GQA++VF + +A
Sbjct: 9 IPPNATVYVKNLDERIKVDQLKHALEEIFSEYGTILEIVAKTNLKAKGQAFIVFDNIESA 68
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAE--E 122
+ A+ + F ++KPM + YAK+ SD V +E G K+++ + ERK+ E E
Sbjct: 69 TRAIEDINGFDLFEKPMVLDYAKTPSDATVQRESGGDELEAHKRRRLAEKERKQAHEALE 128
Query: 123 AQQ--------------SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
AQ+ + G G + T A+ E PN ILF++ LP +
Sbjct: 129 AQKKLKRPAAAAEPARPAKTTKGAGLKP---TTAATTAVVPDEYLPPNKILFLRELPDDA 185
Query: 169 TSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN 222
T L +F ++ GF+EVR++ + GIAFVE+E + + A +A G + Q
Sbjct: 186 TQEGLSAIFGRFEGFQEVRLVPGRKGIAFVEYEAEAGAISAKEATSGMPMGDQG 239
>gi|389744433|gb|EIM85616.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 280
Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 92/270 (34%), Positives = 144/270 (53%), Gaps = 49/270 (18%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN T+Y+ NLN++I+KEEL+ L+ LF+ YG++ DVVA KT K+RGQA++VF+++ AA++
Sbjct: 10 PNTTLYLNNLNDQIQKEELRGQLFALFTTYGKVIDVVATKTQKMRGQAFLVFTDLAAATS 69
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS-DCVAKEDGSFVP----------------------- 103
A+R FYDKP+R+QYAK+KS + +ED +FVP
Sbjct: 70 ALRATDGMLFYDKPLRVQYAKTKSYATMRREDPNFVPPTAAHGRPLTDSQVKPIGGAGSS 129
Query: 104 -----REKKKKQEEKAERKRR---------AEEAQQSSMANGTGAQSNGGTAASFRNANT 149
RE + ++ +A+++++ EE + +G AQ G AA+
Sbjct: 130 VQKRTREDEDMEDGRAQKQKKAAAAEEESDDEEMEIDDDEDGPPAQQGGEQAATGAATTI 189
Query: 150 QETAAPNNI-LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA----------KPGIAFV 198
+TA ++ L NLP E T S+L +LFQQY GF+ ++ A K +A V
Sbjct: 190 PQTAGRSSARLLCTNLPGEVTDSVLSVLFQQYQGFQSTQVAPAPTATANAAGQKGKMAQV 249
Query: 199 EFEDDVQSSMAMQALQGFKITPQNPMAITF 228
F+ +S+A +AL GF + M + F
Sbjct: 250 VFDTPELASVAKEALDGFTLKKGWKMTVAF 279
>gi|440639249|gb|ELR09168.1| hypothetical protein GMDG_03746 [Geomyces destructans 20631-21]
Length = 288
Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 80/231 (34%), Positives = 129/231 (55%), Gaps = 19/231 (8%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PP+ T+Y++NL E IK ++LK +L LFS+YG I D+VA K +GQA+VVF V +A
Sbjct: 44 PPSATVYVRNLEEHIKVDQLKEALTELFSEYGEIIDIVAKTNLKAKGQAFVVFDTVESAQ 103
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPRE-KKKKQEEKAERKRRAEEAQQ 125
A+ ++Q F ++KPM++ +AK++SD K G E K+K+ + ++K+ AE A++
Sbjct: 104 KAIDEVQGFELFEKPMQLAFAKTRSDATVKRTGDEEEYESHKRKRLAEKDKKKSAEAAEE 163
Query: 126 S-----------SMANGTGAQSNGGTAASFRNANT-------QETAAPNNILFIQNLPHE 167
+ + A+ T A R++N E PN ILF+QN+P E
Sbjct: 164 AKKLKIAVAAAGNAADMTSRPIKATRGAGLRSSNAATSVVVPDEYLPPNKILFVQNVPDE 223
Query: 168 TTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
L +F ++ GF+EVR++ + GIAFVE+E + + A + G +
Sbjct: 224 YDIDALTSIFGRFEGFREVRLVPGRRGIAFVEYEAEAGAISAKENTAGVAL 274
>gi|323508363|emb|CBQ68234.1| related to small nuclear ribonucleoprotein snRNP U1A [Sporisorium
reilianum SRZ2]
Length = 291
Score = 140 bits (352), Expect = 6e-31, Method: Compositional matrix adjust.
Identities = 88/239 (36%), Positives = 124/239 (51%), Gaps = 17/239 (7%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
QT+Y++NLNEK+K E +K +L LFS YG + V + ++RGQA+V V AA A
Sbjct: 52 GQTLYVQNLNEKVKLETMKATLANLFSNYGTVLSVTSHTNLRMRGQAFVALDNVQAADKA 111
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVA----KEDGSFVPREKKKKQEEKAERK------- 117
R+ FP Y K M+I +AKSKSD V K+ G E K+ +E++ E K
Sbjct: 112 RREAHLFPLYGKAMKISFAKSKSDAVVLQEHKQQGGEESDEFKQHKEQRLEHKKMARRGN 171
Query: 118 ---RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQ---ETAAPNNILFIQNLPHETTSS 171
RR E + + G + AA+ + A + E PN +LF+QN+P
Sbjct: 172 VLRRRELEKKIRAKRAAAGEIAEPEKAAATKRAPQEMPDEYLPPNKMLFLQNIPEGVGKG 231
Query: 172 MLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
LE LF Y G+ +V+ I K IAFVEF D S+ A AL G+ + + ITFA+
Sbjct: 232 ELESLFSAYSGYVDVQTIPGKADIAFVEFSDIPSSATARGALNGYNFGAGDKLKITFAR 290
>gi|449549875|gb|EMD40840.1| hypothetical protein CERSUDRAFT_103222 [Ceriporiopsis subvermispora
B]
Length = 258
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 87/252 (34%), Positives = 131/252 (51%), Gaps = 31/252 (12%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+T+YIKNLN+K+ KEEL+ LY LF+ YG+I ++VA+KT K+RGQA++VFS++ +A+
Sbjct: 6 PNETLYIKNLNDKVNKEELRTQLYALFTTYGKIINIVAMKTEKMRGQAFLVFSDLASATA 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS-DCVAKEDGSFVPREKKKKQE-------------EK 113
A+R + FYDKPM I+YA+++S + +ED +FVP Q EK
Sbjct: 66 ALRACEGIVFYDKPMHIEYARTRSYATLQREDPNFVPPTSVHAQHTSGLNGRSANGTAEK 125
Query: 114 AERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAA---PNNI------LFIQNL 164
R+ R +E S A A Q +A P + L NL
Sbjct: 126 RPREDRMDEDVPGSKREKVDADEEEMEIEDDDEAARQNASAGVVPTTVQHISARLLCTNL 185
Query: 165 PHETTSSMLEMLFQQYPGFKEVRMIEA--------KPGIAFVEFEDDVQSSMAMQALQGF 216
P E T +L +LFQQY GF+ ++ + + +A FE +S A +AL GF
Sbjct: 186 PQEVTDDVLSVLFQQYQGFQSTHVVPSPTPNAQGQRVKMAQTFFESPDLASAAKEALDGF 245
Query: 217 KITPQNPMAITF 228
+ M++ +
Sbjct: 246 TLKKGWVMSVAY 257
>gi|326472389|gb|EGD96398.1| U1 small nuclear ribonucleoprotein [Trichophyton tonsurans CBS
112818]
Length = 267
Score = 139 bits (350), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 136/260 (52%), Gaps = 37/260 (14%)
Query: 6 IPPNQT-----------IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQ 54
IPPN T +Y++NL E+IK E+LK +L +FS+YG I ++VA K +GQ
Sbjct: 11 IPPNPTFVFSFPLKKWELYVRNLEERIKVEQLKEALTEIFSEYGSILEIVAKTNLKAKGQ 70
Query: 55 AWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKA 114
A++VF V +A+ A+ ++ F ++KPM ++YAK+KSD +G E K++
Sbjct: 71 AFIVFDNVDSATRAIDEVNGFELFEKPMVLEYAKTKSDATVMREGGDEELEVHKRRRLAE 130
Query: 115 ERKRRAEEAQQ----------------------SSMANGTGAQSNGGTAASFRNANTQET 152
+ +++A+EA + + G G + G AA E
Sbjct: 131 KERKQAQEALEAQKKLKRPAGAAGTAGGPDSRPAKAQKGAGLKPTGTAAAP---VIPDEY 187
Query: 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQA 212
PN ILF++ LP + L +F ++PGFKEVRM+ + GIAFVE+E++ + A +A
Sbjct: 188 LPPNKILFLRELPESYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYENESGAISAKEA 247
Query: 213 LQGFKITP-QNPMAITFAKK 231
G + + P+ +T+ ++
Sbjct: 248 TSGMALGENEKPIKVTYQRQ 267
>gi|302662086|ref|XP_003022702.1| hypothetical protein TRV_03163 [Trichophyton verrucosum HKI 0517]
gi|291186662|gb|EFE42084.1| hypothetical protein TRV_03163 [Trichophyton verrucosum HKI 0517]
Length = 267
Score = 139 bits (350), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 82/260 (31%), Positives = 135/260 (51%), Gaps = 37/260 (14%)
Query: 6 IPPNQTI-----------YIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQ 54
IPPN T Y++NL E+IK E+LK +L +FS+YG I ++VA K +GQ
Sbjct: 11 IPPNPTFVFSFPLKKWTSYVRNLEERIKVEQLKEALTEIFSEYGSILEIVAKTNLKAKGQ 70
Query: 55 AWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKA 114
A++VF V +A+ A+ ++ F ++KPM ++YAK+KSD +G E K++
Sbjct: 71 AFIVFDNVDSATRAIDEVNGFELFEKPMVLEYAKTKSDATVMREGGDEELEAHKRRRLAE 130
Query: 115 ERKRRAEEAQQ----------------------SSMANGTGAQSNGGTAASFRNANTQET 152
+ +++A+EA + + G G + G AA E
Sbjct: 131 KERKQAQEALEAQKKLKRPAGAAGTAGGPDSRPAKAQKGAGLKPTGAAAAP---VIPDEY 187
Query: 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQA 212
PN ILF++ LP + L +F ++PGFKEVRM+ + GIAFVE+E++ + A +A
Sbjct: 188 LPPNKILFLRELPETYDADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYENESGAISAKEA 247
Query: 213 LQGFKITP-QNPMAITFAKK 231
G + + P+ +T+ ++
Sbjct: 248 TSGMALGENEKPIKVTYQRQ 267
>gi|124507237|ref|XP_001352215.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
gi|23505245|emb|CAD52025.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
falciparum 3D7]
Length = 193
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 81/229 (35%), Positives = 116/229 (50%), Gaps = 37/229 (16%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M DIPPNQT+Y+ NL +KI +LK LY F YG I D+ K+ K RGQA++VF+
Sbjct: 1 MDVADIPPNQTLYVNNLEDKINVNDLKFLLYEFFCPYGNIIDINIKKSNKGRGQAFIVFN 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
+ +++ A + ++ F K + I YAK+KS + K +G++ P K + +
Sbjct: 61 NIASSTLAYKNLKGKMFLKKNININYAKTKSTIIQKIEGTYNPLLNYKSKHNIEHK---- 116
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
+N T L +QNLP E + LE+LF QY
Sbjct: 117 --------------------------SNLIYT------LLVQNLPDEINKNALEILFNQY 144
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
PGF EVR I K IAFV+F + ++M LQ FKITP +PM I++
Sbjct: 145 PGFYEVRYIPGK-NIAFVDFTAQEHAEISMTGLQNFKITPHHPMKISWV 192
>gi|156088273|ref|XP_001611543.1| U2 small nuclear ribonucleoprotein B' [Babesia bovis T2Bo]
gi|154798797|gb|EDO07975.1| U2 small nuclear ribonucleoprotein B', putative [Babesia bovis]
Length = 285
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 87/269 (32%), Positives = 144/269 (53%), Gaps = 53/269 (19%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPNQTIYIKN+NE+IK + LK L +F ++G+I D+VAL + +GQA+++F V +A
Sbjct: 27 IPPNQTIYIKNINERIKVDVLKAELLKMFGRFGKILDIVALTSFWRKGQAFIIFDNVESA 86
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK--------KKKQEEKAERK 117
+NA+ +MQ F M+I YA+ KSD +AK G++ PR + K +++E+ +R
Sbjct: 87 TNALHEMQGFVMDGHAMQINYAREKSDIIAKGQGTYRPRPEGPKKPRAIKDREQEQLKRF 146
Query: 118 RRAEEA----------------------------QQSSMANGTGAQSNGGTAASFRNANT 149
R + Q ++ G G S+ ++ R A+T
Sbjct: 147 ERLQHDYLTGAIEGMTGPGDPKLIQALQAAQITFQAMALTKGPGVDSHDDSS---RYAST 203
Query: 150 QETA--APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSS 207
A PN LF++ LP + + + +F + GF+E R+I A+ +AF++F+++ +
Sbjct: 204 ASMARGLPNRTLFVEGLPEGVSLADVNAVFARSVGFQEARVIAAR-KVAFIDFDNEFNAG 262
Query: 208 MAMQALQGFKITPQNPMA-----ITFAKK 231
AMQALQ ++PM I++AK+
Sbjct: 263 CAMQALQ------EHPMGDSTLRISYAKR 285
>gi|397514483|ref|XP_003827514.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Pan paniscus]
Length = 176
Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 86/231 (37%), Positives = 118/231 (51%), Gaps = 60/231 (25%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN+ IYI N+N+KIK+E LKR + LFSQ+G + +VALKT K+ + + +
Sbjct: 2 DIRPNRLIYINNMNDKIKEEGLKRFPHALFSQFGHVVSIVALKTMKMXCRT------LGS 55
Query: 65 ASNAVRQMQNFPFYDK----PMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
++NA+RQ+Q FP YD PM+IQYAK+ SD ++K +F + K+K
Sbjct: 56 STNALRQLQGFPLYDNLHXFPMQIQYAKTDSDIISKMCDTFSDKRKEK------------ 103
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
+PN NLP ET ML +LF +
Sbjct: 104 ---------------------------------SPN-----FNLPAETHEMMLSVLFNWF 125
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PGFK+VR + K GIA VEFE+ + ALQGFK+T + M IT KK
Sbjct: 126 PGFKKVRFVPGKHGIALVEFENGKXAGALSAALQGFKVTLSHAMKITCVKK 176
>gi|346977343|gb|EGY20795.1| U1 small nuclear ribonucleoprotein A [Verticillium dahliae VdLs.17]
Length = 246
Score = 138 bits (348), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 79/245 (32%), Positives = 133/245 (54%), Gaps = 23/245 (9%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
P T+Y++NL E++K + LK SL +FS+YG + +++A K +GQA++VF + +A
Sbjct: 5 PSIATVYVRNLEERVKIDVLKESLLQIFSEYGNVLEIIAKTNLKSKGQAFIVFDDADSAQ 64
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA--Q 124
NA+ ++Q F +DKPM++ AK++SD K GS E +++ + K+RA EA +
Sbjct: 65 NAIDEVQGFQLFDKPMQVALAKTRSDATVKTQGSEEDFEAHRRRRLAEKDKKRALEAAEE 124
Query: 125 QSSM------------------ANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH 166
Q M A G G +S+ A+S E PN ILFIQNLP
Sbjct: 125 QKRMQRSGAGAATDAAGRPAKAARGAGLKSSNPAASS---VVPDEYLPPNKILFIQNLPE 181
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226
+ L +F ++ GF+EVR++ + GIAFVE++ + + A + G + + + +
Sbjct: 182 DFDIEALTDIFGRFDGFREVRLVPGRRGIAFVEYDGEQGAITAKENTAGMVLGESSTIKV 241
Query: 227 TFAKK 231
T+ ++
Sbjct: 242 TYQRQ 246
>gi|406864382|gb|EKD17427.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 253
Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 81/241 (33%), Positives = 126/241 (52%), Gaps = 18/241 (7%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N T+Y++NL E IK L SL +FS+YG I DVVA K +GQA+VVF V +A+
Sbjct: 13 NATVYVRNLEESIKIPTLIESLKEIFSEYGTIIDVVAKANLKAKGQAFVVFDNVESATQC 72
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS----------FVPREKKKKQEEKAERKR 118
+ ++Q F + KPM++ +AK++SD K + + KKK E+AE +
Sbjct: 73 IEEVQGFDLFGKPMQLAFAKTRSDAFVKRTAGDDELESHKRRRLAEKDKKKAAEQAEELK 132
Query: 119 RAEEAQQSSMANGTGAQSNGGT-AASFRNANTQETAA-------PNNILFIQNLPHETTS 170
R + MA GA+ T A ++ N A PN ILF+QNLP +
Sbjct: 133 RLKHTAPPGMAPDMGARPIKATRGAGLKSTNAGAAAVIPDEYLPPNKILFLQNLPEDYDV 192
Query: 171 SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
L +F ++ GF+EVR++ + GIAFVE++ +V + A + G + M +T+ +
Sbjct: 193 DSLTAIFGRFEGFREVRLVPGRRGIAFVEYDAEVGAISAKENTAGMSLGQGQVMKVTYQR 252
Query: 231 K 231
+
Sbjct: 253 Q 253
>gi|358054072|dbj|GAA99871.1| hypothetical protein E5Q_06574 [Mixia osmundae IAM 14324]
Length = 302
Score = 137 bits (346), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 82/235 (34%), Positives = 126/235 (53%), Gaps = 13/235 (5%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
++TIYI NLNE + + +K++L LF +G + DVV + ++RGQA+V F +A A
Sbjct: 69 SETIYINNLNETVTIKNMKQTLRNLFRNFGTVLDVVVHRNLRMRGQAFVAFEHKKSAWRA 128
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKE------DGSFVPREKKKKQEEKAERKRRAEE 122
V ++++FP Y KPM++ YAK+++D + K D R+ +KK + R+
Sbjct: 129 VNEVKDFPLYGKPMQLAYAKTQADALVKRKLPEKLDEHLAERKVRKKVSRRDNPIRQKAL 188
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQ------ETAAPNNILFIQNLPHETTSSMLEML 176
+ + G AA+ A + E PN ILF+QNLP LE L
Sbjct: 189 EARRAARTAAENAPVDGKAAAPAAAQRRIVQMPDEYLPPNKILFVQNLPDSVNKDALETL 248
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F Q+P EVRMI + GIAFVEF D+ S +A +AL K ++ + +TFA++
Sbjct: 249 FTQFPNLSEVRMIPGRKGIAFVEFTDETSSGVAREALHNQKYE-ESKIKVTFARQ 302
Score = 40.0 bits (92), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 49/83 (59%), Gaps = 6/83 (7%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN+ ++++NL + + K+ +L LF+Q+ + +V + P +G A+V F++ T++
Sbjct: 225 LPPNKILFVQNLPDSVNKD----ALETLFTQFPNLSEVRMI--PGRKGIAFVEFTDETSS 278
Query: 66 SNAVRQMQNFPFYDKPMRIQYAK 88
A + N + + +++ +A+
Sbjct: 279 GVAREALHNQKYEESKIKVTFAR 301
>gi|429864037|gb|ELA38421.1| u1 small nuclear [Colletotrichum gloeosporioides Nara gc5]
Length = 247
Score = 137 bits (345), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 72/242 (29%), Positives = 127/242 (52%), Gaps = 18/242 (7%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y++NL E+ K ++LK +L +FS+YG + D+VA + +GQA+VVF +A
Sbjct: 6 PITTVYVRNLEERAKIDQLKDALLQIFSEYGNVLDIVAKSNLRAKGQAFVVFDSPESAQK 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS-----------FVPREKKKKQEEKAER 116
A+ +Q F +DKPM++ A+++SD K G+ ++KK+ E E+
Sbjct: 66 AIDDVQGFELFDKPMQLALARTRSDATVKTTGNEEEFELHKRRRLAEKDKKRAYEAAEEQ 125
Query: 117 KRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAA-------PNNILFIQNLPHETT 169
KR S+ + TG + ++ N TA PN ILF+QNLP +
Sbjct: 126 KRLKRSGPAGSVPDMTGRPAKAARGTGLKSTNPSATAVVPDEYLPPNKILFVQNLPDDYD 185
Query: 170 SSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
+ +F ++ GF+EVR++ + GIAFVE++ + + A + G + + + +T+
Sbjct: 186 IEAVTSIFGRFEGFREVRLVPGRRGIAFVEYDGEQGAITAKENTAGMVLGDSHTIKVTYQ 245
Query: 230 KK 231
++
Sbjct: 246 RQ 247
>gi|22219383|pdb|1M5K|C Chain C, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
gi|22219386|pdb|1M5K|F Chain F, Crystal Structure Of A Hairpin Ribozyme In The
Catalytically-Active Conformation
gi|24987694|pdb|1M5O|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987697|pdb|1M5O|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|24987701|pdb|1M5P|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987705|pdb|1M5P|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|24987712|pdb|1M5V|C Chain C, Transition State Stabilization By A Catalytic Rna
gi|24987713|pdb|1M5V|F Chain F, Transition State Stabilization By A Catalytic Rna
gi|49259013|pdb|1SJ3|P Chain P, Hepatitis Delta Virus Gemonic Ribozyme Precursor, With
Mg2+ Bound
gi|49259015|pdb|1SJ4|P Chain P, Crystal Structure Of A C75u Mutant Hepatitis Delta Virus
Ribozyme Precursor, In Cu2+ Solution
gi|49259033|pdb|1SJF|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Cobalt
Hexammine Solution
gi|49259520|pdb|1VBX|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Edta Solution
gi|49259522|pdb|1VBY|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, And Mn2+ Bound
gi|49259524|pdb|1VBZ|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Ba2+ Solution
gi|49259526|pdb|1VC0|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Imidazole And
Sr2+ Solution
gi|49259528|pdb|1VC5|A Chain A, Crystal Structure Of The Wild Type Hepatitis Delta Virus
Gemonic Ribozyme Precursor, In Edta Solution
gi|49259530|pdb|1VC6|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Product With C75u Mutaion, Cleaved In Imidazole
And Mg2+ Solutions
gi|49259532|pdb|1VC7|A Chain A, Crystal Structure Of The Hepatitis Delta Virus Gemonic
Ribozyme Precursor, With C75u Mutaion, In Sr2+ Solution
gi|145580050|pdb|2OIH|A Chain A, Hepatitis Delta Virus Gemonic Ribozyme Precursor With C75u
Mutation And Bound To Monovalent Cation Tl+
gi|145580056|pdb|2OJ3|A Chain A, Hepatitis Delta Virus Ribozyme Precursor Structure, With
C75u Mutation, Bound To Tl+ And Cobalt Hexammine
(Co(Nh3) 63+)
Length = 100
Score = 137 bits (344), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 58/93 (62%), Positives = 79/93 (84%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SL+ +FS++G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS 100
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGT 100
>gi|46116888|ref|XP_384462.1| hypothetical protein FG04286.1 [Gibberella zeae PH-1]
Length = 242
Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 74/235 (31%), Positives = 130/235 (55%), Gaps = 15/235 (6%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+Y++NL E++K E L +L +FS++G + D+VA K + +GQA++V+ +A A+
Sbjct: 9 TVYVQNLEERVKLETLVDALRTIFSEFGNVVDIVAKKNLRAKGQAFIVYDNAESAQEAIE 68
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA---QQSS 127
++ F +DKPM++ A+S+SD + GS E K+ + + KR+AEEA Q+ S
Sbjct: 69 EINGFDLFDKPMKLALARSRSDKTVELTGSQEELENHKRHRQAEKDKRKAEEAAEEQRQS 128
Query: 128 MANGTGAQSN-----------GGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
+GA N T+A+ + E PN ILF+QNLP + L +
Sbjct: 129 NKRASGATDNRPAKAAKSSGLKSTSAAAATSVLDEFLPPNKILFVQNLPEDYDIEALTSV 188
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F ++ G +EVR++ + GIAF+E+E + + A + G + + P+ +T+ ++
Sbjct: 189 FGRFEGLREVRLVPTRRGIAFIEYETEQGAITAKENTAGLNLGDK-PIKVTYQRQ 242
>gi|171690714|ref|XP_001910282.1| hypothetical protein [Podospora anserina S mat+]
gi|170945305|emb|CAP71417.1| unnamed protein product [Podospora anserina S mat+]
Length = 248
Score = 136 bits (343), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 130/245 (53%), Gaps = 24/245 (9%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y++NL E++K E LK +L +FS+YG + D+V K +GQA+VVF + +A
Sbjct: 7 PIATVYVRNLEERVKPEPLKEALMVIFSEYGNVIDIVVKTNLKAKGQAFVVFDKPESALT 66
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS-----------FVPREKKKKQEEKAER 116
A+ ++Q F ++KPM++ A+++SD K+ G+ ++KKK E E+
Sbjct: 67 AIEEVQGFELFEKPMQVALARTRSDATVKQTGNEEEFDAHKRRRMAEKDKKKALETAEEQ 126
Query: 117 KR---------RAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHE 167
KR A + + A G G +S G AA+ E PN ILF+QNLP +
Sbjct: 127 KRLKRPLPGAETAVSGRPTKNARGAGLKSTGAGAAA---VVPDEYLPPNRILFVQNLPDD 183
Query: 168 TTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI-TPQNPMAI 226
L +F ++ GF+EVR + + GIAFVE++ + + A + G + + M +
Sbjct: 184 FGKDELTGIFSRFEGFREVRTVPGRSGIAFVEYDAEAGAITAKENTAGMALKNGEKTMKV 243
Query: 227 TFAKK 231
T+ ++
Sbjct: 244 TYQRQ 248
>gi|294868584|ref|XP_002765593.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
gi|239865672|gb|EEQ98310.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
Length = 400
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 89/280 (31%), Positives = 144/280 (51%), Gaps = 55/280 (19%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D PPN+T+YI NLN+++K EELK+S+ L G + D +A+++ + RGQ +VVFS
Sbjct: 123 DFPPNETLYINNLNDRVKPEELKKSILELCKPCGTVIDCIAMRSLRRRGQVFVVFSSKKE 182
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE-- 122
+S+A++++Q Y K MR+ YAK+KSD +AK++G++V R+K+K +E +A + + +
Sbjct: 183 SSSAMKKLQGHSLYSKNMRVSYAKTKSDAIAKKEGTYVRRDKEKLREMRAAAQAKLQPEA 242
Query: 123 --------------------------AQQSSMANGTGAQS-------NGG---------- 139
QQ + N TG S N G
Sbjct: 243 AAQAAAAAAAAAAAKAAVPGGPMPGGMQQPTPPNFTGMPSGFQGMPFNIGQQQQPAQQKK 302
Query: 140 --TAASFRNAN------TQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA 191
TA F N Q + PN LF++NLP T L +F+ YPGF+ R+I A
Sbjct: 303 LTTAEDFFNTAVSAPKVVQHSNVPNKTLFVENLPPRCTPEKLTAVFKSYPGFEGTRVI-A 361
Query: 192 KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+ + F++F + Q++MA A + + Q + I++A+K
Sbjct: 362 ERQVGFIDFSSEFQATMAKNARGDYTMEGQL-VKISYARK 400
>gi|367045436|ref|XP_003653098.1| hypothetical protein THITE_2115135 [Thielavia terrestris NRRL 8126]
gi|347000360|gb|AEO66762.1| hypothetical protein THITE_2115135 [Thielavia terrestris NRRL 8126]
Length = 248
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 17/229 (7%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PP T+Y++NL E++K E LK++L +FS+YG + D+VA K +GQA+VVF + +A
Sbjct: 6 PPIATVYVRNLEERVKPEPLKQALRAVFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAL 65
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS--FVPREKKKKQEEKAERKRRAEEAQ 124
A+ ++Q F ++KPM++ A+++SD G+ K+++ EK ++K +
Sbjct: 66 AAIEEVQGFELFEKPMQVALARTRSDATVMLHGTEEEFDAHKRRRMAEKDKKKALESAEE 125
Query: 125 QSSMAN---GTGAQSNGGTAASFRNANTQETAA------------PNNILFIQNLPHETT 169
Q + G GA+ A + R A + T A PN ILF+QNLP +
Sbjct: 126 QKRLKRPMPGAGAEVGARPAKNARGAGLKATGAGPAAVVPDEYLPPNRILFVQNLPDDFD 185
Query: 170 SSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
L +F + GF+EVR + + GIAFVE+E + + A + G +
Sbjct: 186 KDALTAIFGHFEGFREVRTVPGRSGIAFVEYETEAGAITAKENTAGMAL 234
>gi|350630544|gb|EHA18916.1| hypothetical protein ASPNIDRAFT_42727 [Aspergillus niger ATCC 1015]
Length = 249
Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 84/245 (34%), Positives = 136/245 (55%), Gaps = 24/245 (9%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN T+ +NL E+IK ++LK +L +FS+YG + ++VA K +GQA+VVF V AA
Sbjct: 10 IPPNCTV--RNLEERIKVDQLKEALEEIFSEYGTVLEIVAKTNLKAKGQAFVVFDTVEAA 67
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSD-CVAKEDGSFVPREKKKKQEEKAERKRRAE--E 122
+ A+ ++ F +DKPM + YAK++SD V +E G K+++ + ERK+ E E
Sbjct: 68 TRAIDEINGFELFDKPMVLDYAKTRSDMTVLREGGEDELEAHKRRRLAEKERKQAHEALE 127
Query: 123 AQQ---------------SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHE 167
AQ+ + A G G + G AA+ E PN ILF+++LP
Sbjct: 128 AQKKLKRPPGAPTEPGRPAKTAKGAGLKPTSGAAAAV---IPDEYLPPNKILFLRDLPDT 184
Query: 168 TTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAI 226
L +F ++ GF+EVR++ + GIAFVE+E++ + A +A G + P+ +
Sbjct: 185 ADQDSLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGEAGKPIRV 244
Query: 227 TFAKK 231
T+ ++
Sbjct: 245 TYQRQ 249
>gi|33357758|pdb|1OIA|A Chain A, U1a Rnp Domain 1-95
gi|33357759|pdb|1OIA|B Chain B, U1a Rnp Domain 1-95
Length = 95
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 58/88 (65%), Positives = 76/88 (86%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVA 95
A+R MQ FPFYDKPMRIQYAK+ SD +A
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIA 95
>gi|71004576|ref|XP_756954.1| hypothetical protein UM00807.1 [Ustilago maydis 521]
gi|46095668|gb|EAK80901.1| hypothetical protein UM00807.1 [Ustilago maydis 521]
Length = 314
Score = 136 bits (342), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 87/235 (37%), Positives = 121/235 (51%), Gaps = 21/235 (8%)
Query: 3 TGDIPP-----NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWV 57
+ D PP QT+Y++NLNEK+K E +K +L LFS Y + V A ++RGQA+V
Sbjct: 39 SDDPPPLPSDAGQTLYVQNLNEKVKLETMKATLTNLFSNYATVLSVTAHTNLRMRGQAFV 98
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVA----KEDGSFVPREKKKKQEEK 113
+V AA A R+ FP Y K M+I +AKSKSD V K++G K+ +E++
Sbjct: 99 SLDDVHAADKARREAHLFPLYGKAMKISFAKSKSDAVVLQKLKDEGGHESEMFKQHKEQR 158
Query: 114 AERKRRAE----------EAQQSSMANGTGAQSNGGTAASFRNAN--TQETAAPNNILFI 161
+ K++A E + + TG S AA R E PN +LF+
Sbjct: 159 LQHKKKARRDNVLRRKELEKKIRAKKAATGEISQPEKAAPKRTQQQMPDEYLPPNKMLFL 218
Query: 162 QNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGF 216
QN+P LE LF YPG+ +V+ I K IAFVEF D S+ A AL G+
Sbjct: 219 QNIPEGVGKGELESLFSAYPGYVDVQTIPGKAEIAFVEFADIPSSATARGALNGY 273
>gi|294942132|ref|XP_002783392.1| U1 snRNP protein, putative [Perkinsus marinus ATCC 50983]
gi|239895847|gb|EER15188.1| U1 snRNP protein, putative [Perkinsus marinus ATCC 50983]
Length = 325
Score = 135 bits (341), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 87/283 (30%), Positives = 143/283 (50%), Gaps = 58/283 (20%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D PPN+T+YI NLN+++K EELK+S+ L G + D +A+++ + RGQ +VVFS
Sbjct: 45 DFPPNETLYINNLNDRVKPEELKKSILELCKSCGTVIDCIAMRSLRRRGQVFVVFSSKEE 104
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQE--EKAERKRRAEE 122
+S+A++++Q Y K MR+ YAK+KSD +AK++G++V R+K+K +E E A+ K + +
Sbjct: 105 SSSAMKKLQGHSLYSKNMRVSYAKTKSDAIAKKEGTYVRRDKEKLKEMREAAQAKLQPDA 164
Query: 123 --------------------------AQQSSMANGTGAQSNG------------------ 138
Q + N G + G
Sbjct: 165 AAQAAAAAAAAAAAAKAAVPGGAMPAGMQPMVPNFAGVPAGGFQGMPFNIGQQQQQQPVQ 224
Query: 139 ----GTAASFRNAN------TQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM 188
TA F N + Q + PN LF++NLP T L +F+ YPGF+ R+
Sbjct: 225 QKKLTTAEDFFNTSVSAPKVVQHSNVPNKTLFVENLPPRCTPEKLTAVFKSYPGFEGTRV 284
Query: 189 IEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
I A+ + F++F + Q++MA A + + Q + I++A+K
Sbjct: 285 I-AERQVGFIDFSSEFQATMAKNARGDYTMEGQL-VKISYARK 325
>gi|412990465|emb|CCO19783.1| U1 small nuclear ribonucleoprotein A [Bathycoccus prasinos]
Length = 240
Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 83/246 (33%), Positives = 122/246 (49%), Gaps = 39/246 (15%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N T+YI NLNE + EL+++L +FSQ+GR+ ++ A + KLRGQAW+VF +A NA
Sbjct: 7 NTTLYISNLNETVAVNELRKALLAVFSQFGRVSNIFASRRYKLRGQAWIVFGNSQSADNA 66
Query: 69 VRQMQNFPFYDKPMRIQYA-----------------KSKSDCV-------AKEDGSFVPR 104
+ +Q PFY KPM I A KS C+ + G V
Sbjct: 67 LHVLQGLPFYSKPMNIAVALKFPSASMKINSSELPQKSSEQCIHSSGISSMRRSGEDVGI 126
Query: 105 EKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164
+++KK E++ E K + + A S G N N + LFI
Sbjct: 127 DQEKKGEDREEHKNKLKSA----------ILSVKGLPGFILNFNFELLGF--TFLFI--- 171
Query: 165 PHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPM 224
TT ML +LF+Q+PGF+ VR KPG+A V+F +++ A+ LQGF++ + M
Sbjct: 172 TEATTDQMLSLLFKQFPGFQRVRTDSEKPGLASVQFRCAAEATTALSGLQGFRLNATHTM 231
Query: 225 AITFAK 230
I +AK
Sbjct: 232 EIEYAK 237
>gi|408395814|gb|EKJ74987.1| hypothetical protein FPSE_04807 [Fusarium pseudograminearum CS3096]
Length = 242
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 73/235 (31%), Positives = 129/235 (54%), Gaps = 15/235 (6%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+Y++NL E++K E L +L +FS++G + D+VA K + +GQA++V+ +A A+
Sbjct: 9 TVYVQNLEERVKLETLVDALRTIFSEFGNVVDIVAKKNLRAKGQAFIVYDNAESAQEAIE 68
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA---QQSS 127
++ F +DKPM++ A+S+SD + GS E K+ + + KR+AEEA Q+ S
Sbjct: 69 EINGFDLFDKPMKLALARSRSDKTVELTGSQEELENHKRHRQAEKDKRKAEEAAEEQRQS 128
Query: 128 MANGTGAQSN-----------GGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
+GA N T+A+ + E PN ILF+QN P + L +
Sbjct: 129 NKRASGATDNRPAKVAKSSGLKSTSAAAATSVLDEFLPPNKILFVQNFPEDYDVEALTSV 188
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F ++ G +EVR++ + GIAF+E+E + + A + G + + P+ +T+ ++
Sbjct: 189 FGRFEGLREVRLVPTRRGIAFIEYETEQGAITAKENTAGLNLGDK-PIKVTYQRQ 242
>gi|258567630|ref|XP_002584559.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237906005|gb|EEP80406.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 1150
Score = 135 bits (339), Expect = 2e-29, Method: Composition-based stats.
Identities = 77/233 (33%), Positives = 131/233 (56%), Gaps = 15/233 (6%)
Query: 14 IKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQ 73
++NL E++K ++LK +L +F++YG I ++VA K +GQA++VF V +A+ A+ ++
Sbjct: 918 VRNLEERVKVDQLKEALSEIFAEYGSILEIVAKSNLKAKGQAFIVFDNVDSATRAIEEIN 977
Query: 74 NFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAEEAQ-QSSMANG 131
F ++KPM + YAK++SD V KE G K+++ + ERK+ E + Q +
Sbjct: 978 GFELFEKPMVLDYAKTRSDATVLKEAGEQELETHKRRRLAEKERKQAQEALENQKKLKRP 1037
Query: 132 TGAQSNGGTAASFRNANTQETAA------------PNNILFIQNLPHETTSSMLEMLFQQ 179
GA ++ A + R A + T A PN ILF++ +P S+ L +F +
Sbjct: 1038 AGAAADTRPAKTTRGAGLKPTGAAAAPVIPDEYLPPNKILFLREVPDSYDSAGLTAIFGR 1097
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ-NPMAITFAKK 231
+ GFKEVRM+ + GIAFVE+E + + A +A G + PM +T+ ++
Sbjct: 1098 FEGFKEVRMVPGRKGIAFVEYESEAGAISAKEATSGMTLGENGKPMRVTYQRQ 1150
>gi|116195978|ref|XP_001223801.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
gi|88180500|gb|EAQ87968.1| conserved hypothetical protein [Chaetomium globosum CBS 148.51]
Length = 247
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 122/231 (52%), Gaps = 23/231 (9%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y++NL E++K E LK +L LFS+YG + D+VA K +GQA+VVF + +A
Sbjct: 6 PIATVYVRNLEERVKPEPLKEALRALFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQA 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS----------FVPREKKKKQEEKAERK 117
A+ + F +DKPM++ A+++SD + G+ + + KKK E AE +
Sbjct: 66 AIEDIHGFELFDKPMQLALARTRSDATVMQTGNEEEFDAHKRRRMAEKDKKKALETAEEQ 125
Query: 118 RRAEE----------AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHE 167
+R + A+ + A G G +S G A + E PN ILF+QNLP +
Sbjct: 126 KRLKRPMPGAAAEVGARPAKNARGAGLKSTGAGATAV---VPDEYLPPNRILFVQNLPDD 182
Query: 168 TTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
L +F ++ GF+EVR + + GIAFVE+E + + A + G +
Sbjct: 183 FDKDALNAIFGRFEGFREVRTVPGRSGIAFVEYEAEAGAITAKENTAGMPL 233
>gi|367022286|ref|XP_003660428.1| hypothetical protein MYCTH_2314150 [Myceliophthora thermophila ATCC
42464]
gi|347007695|gb|AEO55183.1| hypothetical protein MYCTH_2314150 [Myceliophthora thermophila ATCC
42464]
Length = 247
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/228 (32%), Positives = 123/228 (53%), Gaps = 23/228 (10%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+Y++NL E++K E LK +L +FS++G + D+VA K +GQA+VVF + +A A+
Sbjct: 9 TVYVRNLEERVKPEPLKEALRAVFSEFGNVIDIVAKTNLKAKGQAFVVFDKPESAHAAIE 68
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF----------VPREKKKKQEEKAERKRRA 120
++Q F ++KPM++ A+++SD G+ + + KKK E AE ++R
Sbjct: 69 EVQGFELFEKPMQVALARTRSDATVLRTGNAEEFDAHKRRRIAEKDKKKALESAEEQKRL 128
Query: 121 EE----------AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTS 170
+ A+ + A G G +S GG A+ E PN ILF+QNLP +
Sbjct: 129 KRPMPGGPAEAGARPAKNARGAGLKSTGGGPAAV---VPDEYLPPNRILFVQNLPDDMDK 185
Query: 171 SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
L +F ++ GF+EVR + + GIAFVE+E + + A + G +
Sbjct: 186 DALTAIFGRFEGFREVRTVPGRSGIAFVEYEAEAGAITAKENTAGMPL 233
>gi|76156594|gb|AAX27773.2| SJCHGC09182 protein [Schistosoma japonicum]
Length = 239
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 77/99 (77%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIK++ELK+SLY +F Q+G+I D++ +T K+RGQA+VVF ++ +AS
Sbjct: 56 PNNTIYINNLNEKIKRDELKKSLYAVFVQFGQILDIITSRTLKMRGQAFVVFDDINSAST 115
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK 106
A+R MQ FP Y+KPMRI +AK SD +AK G+FV R K
Sbjct: 116 ALRSMQGFPLYEKPMRIHFAKVDSDVIAKRKGTFVQRPK 154
Score = 36.6 bits (83), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 155 PNNILFIQNLPHETTSSMLE----MLFQQYPGFKEV---RMIEAKPGIAFVEFEDDVQSS 207
PNN ++I NL + L+ +F Q+ ++ R ++ + G AFV F+D +S
Sbjct: 56 PNNTIYINNLNEKIKRDELKKSLYAVFVQFGQILDIITSRTLKMR-GQAFVVFDDINSAS 114
Query: 208 MAMQALQGFKITPQNPMAITFAK 230
A++++QGF + + PM I FAK
Sbjct: 115 TALRSMQGFPLY-EKPMRIHFAK 136
>gi|226488853|emb|CAX74776.1| U1 small nuclear ribonucleoprotein A [Schistosoma japonicum]
Length = 333
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 77/99 (77%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIK++ELK+SLY +F Q+G+I D++ +T K+RGQA+VVF ++ +AS
Sbjct: 56 PNNTIYINNLNEKIKRDELKKSLYAVFVQFGQILDIITSRTLKMRGQAFVVFDDINSAST 115
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK 106
A+R MQ FP Y+KPMRI +AK SD +AK G+FV R K
Sbjct: 116 ALRSMQGFPLYEKPMRIHFAKVDSDVIAKRKGTFVQRPK 154
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/118 (41%), Positives = 68/118 (57%), Gaps = 8/118 (6%)
Query: 121 EEAQQSSMANGTGAQSNGG-------TAASFRNANTQETAAPNNILFIQNLPHETTSSML 173
+ A +++ +NG G GG S N T PN ILF+ NLP ++ +ML
Sbjct: 217 DGANETNSSNG-GVDQTGGYPPPPPPPPPSVVNPATIPDQPPNKILFLTNLPDDSDEAML 275
Query: 174 EMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
MLF Q+ G++EVRM+ + IAFVEF ++V++S A LQGF I P + ITFAKK
Sbjct: 276 SMLFGQFTGYREVRMVPGRHDIAFVEFGNEVEASAAKLGLQGFNIRPGQAIRITFAKK 333
Score = 36.6 bits (83), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 45/83 (54%), Gaps = 9/83 (10%)
Query: 155 PNNILFIQNL----PHETTSSMLEMLFQQYPGFKEV---RMIEAKPGIAFVEFEDDVQSS 207
PNN ++I NL + L +F Q+ ++ R ++ + G AFV F+D +S
Sbjct: 56 PNNTIYINNLNEKIKRDELKKSLYAVFVQFGQILDIITSRTLKMR-GQAFVVFDDINSAS 114
Query: 208 MAMQALQGFKITPQNPMAITFAK 230
A++++QGF + + PM I FAK
Sbjct: 115 TALRSMQGFPLY-EKPMRIHFAK 136
>gi|302891485|ref|XP_003044624.1| hypothetical protein NECHADRAFT_100804 [Nectria haematococca mpVI
77-13-4]
gi|256725549|gb|EEU38911.1| hypothetical protein NECHADRAFT_100804 [Nectria haematococca mpVI
77-13-4]
Length = 243
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 132/236 (55%), Gaps = 16/236 (6%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+Y++NL E++K E L +L +FS++G + DVVA K K +GQA+VVF + +A +A+
Sbjct: 9 TVYVQNLEERVKLESLTEALRTVFSEFGNVVDVVAKKNLKAKGQAFVVFDDAESARSAIE 68
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA---QQSS 127
++ F + KPM++ A+S+SD + + S E K+ + + KR+A EA Q+
Sbjct: 69 EVDGFELFGKPMKVALARSRSDKTVEMNCSQEEFESHKRHRQAEKDKRKALEAAEEQRQL 128
Query: 128 MANGTGAQSNGGTAASFRNANTQETAA------------PNNILFIQNLPHETTSSMLEM 175
G GA + A + R + + T+A PN ILF+QNLP + L
Sbjct: 129 NKRGPGAAPDSRPAKTARPSGLKSTSAAAAGGVLDEFLPPNKILFVQNLPEDYDIEALTG 188
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+F ++ GF+EVR++ + GIAFVE+E + + A + G + + P+ +T+ ++
Sbjct: 189 VFGRFEGFREVRLVPGRRGIAFVEYEAEQGAITAKENTAGMSLG-EKPIKVTYQRQ 243
>gi|226469924|emb|CAX70243.1| U1 small nuclear ribonucleoprotein A [Schistosoma japonicum]
gi|226488855|emb|CAX74777.1| U1 small nuclear ribonucleoprotein A [Schistosoma japonicum]
Length = 333
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 58/99 (58%), Positives = 77/99 (77%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIK++ELK+SLY +F Q+G+I D++ +T K+RGQA+VVF ++ +AS
Sbjct: 56 PNNTIYINNLNEKIKRDELKKSLYAVFVQFGQILDIITSRTLKMRGQAFVVFDDINSAST 115
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK 106
A+R MQ FP Y+KPMRI +AK SD +AK G+FV R K
Sbjct: 116 ALRSMQGFPLYEKPMRIHFAKVDSDVIAKRKGTFVQRPK 154
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 43/89 (48%), Positives = 57/89 (64%)
Query: 143 SFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFED 202
S N T PN ILF+ NLP ++ +ML MLF Q+ G++EVRM+ + IAFVEF +
Sbjct: 245 SVVNPATIPDQPPNKILFLTNLPDDSDEAMLSMLFGQFTGYREVRMVPGRHDIAFVEFGN 304
Query: 203 DVQSSMAMQALQGFKITPQNPMAITFAKK 231
+V++S A LQGF I P + ITFAKK
Sbjct: 305 EVEASAAKLGLQGFNIRPGQAIRITFAKK 333
Score = 36.6 bits (83), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 155 PNNILFIQNLPHETTSSMLE----MLFQQYPGFKEV---RMIEAKPGIAFVEFEDDVQSS 207
PNN ++I NL + L+ +F Q+ ++ R ++ + G AFV F+D +S
Sbjct: 56 PNNTIYINNLNEKIKRDELKKSLYAVFVQFGQILDIITSRTLKMR-GQAFVVFDDINSAS 114
Query: 208 MAMQALQGFKITPQNPMAITFAK 230
A++++QGF + + PM I FAK
Sbjct: 115 TALRSMQGFPLY-EKPMRIHFAK 136
>gi|126031306|pdb|2NZ4|A Chain A, Structural Investigation Of The Glms Ribozyme Bound To
Its Catalytic Cofactor
gi|126031309|pdb|2NZ4|B Chain B, Structural Investigation Of The Glms Ribozyme Bound To
Its Catalytic Cofactor
gi|126031312|pdb|2NZ4|C Chain C, Structural Investigation Of The Glms Ribozyme Bound To
Its Catalytic Cofactor
gi|126031315|pdb|2NZ4|D Chain D, Structural Investigation Of The Glms Ribozyme Bound To
Its Catalytic Cofactor
Length = 94
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 77/89 (86%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SL+ +FS++G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 4 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAK 96
A+R MQ FPFYDKPMRIQYAK+ SD +AK
Sbjct: 64 ALRSMQGFPFYDKPMRIQYAKTDSDIIAK 92
>gi|393241088|gb|EJD48612.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 269
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 87/264 (32%), Positives = 133/264 (50%), Gaps = 45/264 (17%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y+ NLN+K+K EL+ LY LFS YGR+ DVVA K+PK+RGQA++VF+++ AA+
Sbjct: 7 PTPTLYVHNLNDKVKTSELRSQLYALFSTYGRVIDVVASKSPKMRGQAFLVFADLAAATT 66
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS-DCVAKEDGSFVP------------------REKKK 108
A+R FYDKP+RI+Y+++KS V +ED +FV EK+
Sbjct: 67 AMRACAGMSFYDKPLRIEYSRTKSYATVRQEDPNFVSPSLAKAKKAPAPATKLNGGEKRP 126
Query: 109 KQEEKAERKRRAEEAQQSSMANGTGAQ-----------SNGGTAASFRNANTQETAAPNN 157
+ ++A+ +R A+ + + G AA+ A+ Q P+
Sbjct: 127 RDSDEADAQREAKRGKADDGDEDEMEIEEDEDVPAKQPATNGVAAAGAAASMQR--PPSA 184
Query: 158 ILFIQNLPHETTSSMLEMLFQQYPGFKEVRM-------------IEAKPGIAFVEFEDDV 204
L NLP E T ML +LF QY GF+ + I AK +A + ++
Sbjct: 185 TLLCTNLPQEITEDMLSVLFSQYQGFQSASVTASQHPAIVNGAQISAKTKMAQIFYDSAE 244
Query: 205 QSSMAMQALQGFKITPQNPMAITF 228
+S A +AL GF + M I++
Sbjct: 245 LASTAKEALDGFAVKKGWQMLISY 268
>gi|52696011|pdb|1U6B|A Chain A, Crystal Structure Of A Self-Splicing Group I Intron With
Both Exons
gi|75765951|pdb|1ZZN|A Chain A, Crystal Structure Of A Group I IntronTWO EXON COMPLEX
THAT Includes All Catalytic Metal Ion Ligands.
gi|262367893|pdb|3G8S|A Chain A, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367896|pdb|3G8S|B Chain B, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367899|pdb|3G8S|C Chain C, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367902|pdb|3G8S|D Chain D, Crystal Structure Of The Pre-Cleaved Bacillus Anthracis
Glms Ribozyme
gi|262367905|pdb|3G8T|A Chain A, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367908|pdb|3G8T|B Chain B, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367911|pdb|3G8T|C Chain C, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367914|pdb|3G8T|D Chain D, Crystal Structure Of The G33a Mutant Bacillus Anthracis
Glms Ribozyme Bound To Glcn6p
gi|262367929|pdb|3G96|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Man6p
gi|262367932|pdb|3G96|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Man6p
gi|262367935|pdb|3G96|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Man6p
gi|262367938|pdb|3G96|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Man6p
gi|262367941|pdb|3G9C|A Chain A, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367944|pdb|3G9C|B Chain B, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367947|pdb|3G9C|C Chain C, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|262367950|pdb|3G9C|D Chain D, Crystal Structure Of The Product Bacillus Anthracis Glms
Ribozyme
gi|266618687|pdb|3IRW|P Chain P, Structure Of A C-Di-Gmp Riboswitch From V. Cholerae
gi|304445913|pdb|3MUM|P Chain P, Crystal Structure Of The G20a Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
gi|304445915|pdb|3MUR|P Chain P, Crystal Structure Of The C92u Mutant C-Di-Gmp Riboswith
Bound To C-Di- Gmp
gi|304445917|pdb|3MUT|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Gmp
gi|304445919|pdb|3MUV|P Chain P, Crystal Structure Of The G20aC92U MUTANT C-Di-Gmp
Riboswith Bound To C-Di-Amp
gi|304445933|pdb|3MXH|P Chain P, Native Structure Of A C-Di-Gmp Riboswitch From V.
Cholerae
gi|327533656|pdb|3P49|B Chain B, Crystal Structure Of A Glycine Riboswitch From
Fusobacterium Nucleatum
gi|345110840|pdb|3R1H|A Chain A, Crystal Structure Of The Class I Ligase
Ribozyme-Substrate Preligation Complex, C47u Mutant,
Ca2+ Bound
gi|345110843|pdb|3R1H|D Chain D, Crystal Structure Of The Class I Ligase
Ribozyme-Substrate Preligation Complex, C47u Mutant,
Ca2+ Bound
gi|345110846|pdb|3R1L|A Chain A, Crystal Structure Of The Class I Ligase
Ribozyme-Substrate Preligation Complex, C47u Mutant,
Mg2+ Bound
gi|345110849|pdb|3R1L|D Chain D, Crystal Structure Of The Class I Ligase
Ribozyme-Substrate Preligation Complex, C47u Mutant,
Mg2+ Bound
gi|367460217|pdb|3UCU|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Pgpg
gi|367460220|pdb|3UCZ|P Chain P, The C-Di-Gmp-I Riboswitch Bound To Gpg
gi|367460223|pdb|3UD3|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Pgpa
gi|367460226|pdb|3UD4|P Chain P, The C92u Mutant C-Di-Gmp-I Riboswitch Bound To Gpa
Length = 98
Score = 135 bits (339), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 77/89 (86%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SL+ +FS++G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAK 96
A+R MQ FPFYDKPMRIQYAK+ SD +AK
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAK 96
>gi|225684437|gb|EEH22721.1| U2 small nuclear ribonucleoprotein B [Paracoccidioides brasiliensis
Pb03]
Length = 1484
Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats.
Identities = 82/251 (32%), Positives = 128/251 (50%), Gaps = 23/251 (9%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M P N ++NL E+IK E LK +L +FS+YG I D+VA K +GQA++VF
Sbjct: 1237 MYVSSSPNNSMKAVQNLEERIKVEPLKEALTEIFSEYGNIIDIVAKTNLKAKGQAFIVFD 1296
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRR 119
V +A+ A+ ++ F ++KPM + YAK++SD V KE G K+++ + ERK+
Sbjct: 1297 NVDSATRAIEEINGFELFEKPMVLDYAKTRSDATVLKEQGEGELEAHKRRRLAEKERKQA 1356
Query: 120 AE------------------EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFI 161
E EA+ S G G + + AA E PN ILF+
Sbjct: 1357 QEALEAQKKLKRGVVAPGGAEARPSKAVKGAGLKPSNAAAAP---VIPDEYLPPNKILFL 1413
Query: 162 QNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ 221
+ +P L +F ++ GFKEVRM+ + GIAFVE+E + + A +A G +
Sbjct: 1414 REIPDSLDQDGLTAVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGEN 1473
Query: 222 N-PMAITFAKK 231
P+ +T+ ++
Sbjct: 1474 GMPIRVTYQRQ 1484
>gi|266618701|pdb|3IWN|C Chain C, Co-Crystal Structure Of A Bacterial C-Di-Gmp Riboswitch
gi|266618702|pdb|3IWN|D Chain D, Co-Crystal Structure Of A Bacterial C-Di-Gmp Riboswitch
Length = 91
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 77/89 (86%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SL+ +FS++G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 3 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 62
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAK 96
A+R MQ FPFYDKPMRIQYAK+ SD +AK
Sbjct: 63 ALRSMQGFPFYDKPMRIQYAKTDSDIIAK 91
>gi|336373622|gb|EGO01960.1| hypothetical protein SERLA73DRAFT_177630 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386441|gb|EGO27587.1| hypothetical protein SERLADRAFT_461313 [Serpula lacrymans var.
lacrymans S7.9]
Length = 262
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 85/253 (33%), Positives = 126/253 (49%), Gaps = 32/253 (12%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN T+YI NLN+KI KEE++ L+ LF+ +GR+ DVVA K PK+RGQA++VF+++ A+
Sbjct: 9 PNTTLYINNLNDKINKEEMRSQLFALFTTHGRVIDVVASKGPKMRGQAFLVFTDLAGATT 68
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVA-KEDGSFVP----------REKKKKQEEKAER 116
A+R + FYDKP+RI YAKSKS + +ED +FVP + K A++
Sbjct: 69 AMRACEGMIFYDKPLRITYAKSKSYATSRREDPNFVPPTSVHARSNLLQIGKSTISSADK 128
Query: 117 KRRAEEAQQSSMANGTGAQSNGGTAASFRNANT-------------QETAAPNNILFIQN 163
++R EE + + Q T P+ L N
Sbjct: 129 RQRDEEDVDGERKSKRERSEEESEDDEEMEIDEDEEQQNRVPATMPQITEQPSAHLLCTN 188
Query: 164 LPHETTSSMLEMLFQQYPGFKEVRMIEA--------KPGIAFVEFEDDVQSSMAMQALQG 215
LP E T +L +LFQQY GF+ + + K +A V FE ++ A +AL G
Sbjct: 189 LPQEVTDDVLSVLFQQYQGFQSTHVSPSPTSNAAGMKVKMAQVLFESPELATTAKEALDG 248
Query: 216 FKITPQNPMAITF 228
F + M + +
Sbjct: 249 FALKKGWKMTVAY 261
>gi|389635243|ref|XP_003715274.1| small nuclear ribonucleoprotein U1a [Magnaporthe oryzae 70-15]
gi|351647607|gb|EHA55467.1| small nuclear ribonucleoprotein U1a [Magnaporthe oryzae 70-15]
gi|440466162|gb|ELQ35444.1| small nuclear ribonucleoprotein U1a,U2b [Magnaporthe oryzae Y34]
gi|440480667|gb|ELQ61320.1| small nuclear ribonucleoprotein U1a,U2b [Magnaporthe oryzae P131]
Length = 234
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 75/240 (31%), Positives = 130/240 (54%), Gaps = 26/240 (10%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y++NL E++K + LK +L +FS+YG I D+VA K +GQA+VVF + +A
Sbjct: 5 PIATVYVRNLEERVKPDVLKETLTTIFSEYGNIIDIVAKTNLKAKGQAFVVFDDPASAQR 64
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE----- 122
A+ ++Q F +DKP+ + A+++SD K +GS +++ +A ++RR E
Sbjct: 65 AIEEVQGFEIFDKPIHLALARTRSDATVKANGS--------EEDLEAHKRRRVAEMDKKK 116
Query: 123 --------AQQSSMAN--GTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSM 172
Q AN G G ++ G A+ E PN ILF+Q+LP +
Sbjct: 117 AAEAAAAQTQLKDRANKPGRGLKATGPAGAA--PTVPDEYLPPNKILFVQHLPEDFDVEK 174
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITFAKK 231
L +F ++ GF+EVR++ + GIAFVE++ + + A + G + + P+ +T+ ++
Sbjct: 175 LTTVFGRFDGFREVRLVPGRRGIAFVEYDGEAGAIAAKENTAGMPLGAEGKPVKVTYQRQ 234
>gi|341897443|gb|EGT53378.1| CBN-RNP-3 protein [Caenorhabditis brenneri]
Length = 190
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 76/193 (39%), Positives = 112/193 (58%), Gaps = 20/193 (10%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN T+Y+ NLNEKIKK+ELKRSL+ +F+Q+G I +++ + K+RGQA VVF EV++
Sbjct: 3 DISPNHTVYVNNLNEKIKKDELKRSLHMIFTQFGEIIQLMSFRKEKMRGQAHVVFKEVSS 62
Query: 65 ASNAVRQMQ-----------NFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEK 113
ASNA+R +Q P Y KP QYA+ SD +A+ G+FV EK++K
Sbjct: 63 ASNALRALQLSPPNLKFSISGLPVYGKPDANQYAREDSDVIARAKGTFV--EKRQKSVGG 120
Query: 114 AERKRRA-EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSM 172
A ++++ E +SS A Q + +++ APNNILF N+P T
Sbjct: 121 ANKQKKPYERPAKSSTAGEKNDQEKS------KEEDSEGPGAPNNILFCSNIPDGTDPEQ 174
Query: 173 LEMLFQQYPGFKE 185
++ +F Q F+E
Sbjct: 175 IQTIFSQCVIFRE 187
>gi|1431699|pdb|1URN|A Chain A, U1a MutantRNA COMPLEX + GLYCEROL
gi|1431701|pdb|1URN|B Chain B, U1a MutantRNA COMPLEX + GLYCEROL
gi|1431703|pdb|1URN|C Chain C, U1a MutantRNA COMPLEX + GLYCEROL
gi|28949021|pdb|1NU4|A Chain A, U1a Rna Binding Domain At 1.8 Angstrom Resolution
Reveals A Pre- Organized C-Terminal Helix
gi|28949022|pdb|1NU4|B Chain B, U1a Rna Binding Domain At 1.8 Angstrom Resolution
Reveals A Pre- Organized C-Terminal Helix
gi|269914461|pdb|3HHN|B Chain B, Crystal Structure Of Class I Ligase Ribozyme
Self-Ligation Product, In Complex With U1a Rbd
gi|269914463|pdb|3HHN|D Chain D, Crystal Structure Of Class I Ligase Ribozyme
Self-Ligation Product, In Complex With U1a Rbd
Length = 97
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 77/89 (86%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SL+ +FS++G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 66
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAK 96
A+R MQ FPFYDKPMRIQYAK+ SD +AK
Sbjct: 67 ALRSMQGFPFYDKPMRIQYAKTDSDIIAK 95
>gi|282403767|pdb|3L3C|A Chain A, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Glc6p
gi|282403770|pdb|3L3C|B Chain B, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Glc6p
gi|282403773|pdb|3L3C|C Chain C, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Glc6p
gi|282403776|pdb|3L3C|D Chain D, Crystal Structure Of The Bacillus Anthracis Glms
Ribozyme Bound To Glc6p
Length = 90
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 77/89 (86%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SL+ +FS++G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 2 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 61
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAK 96
A+R MQ FPFYDKPMRIQYAK+ SD +AK
Sbjct: 62 ALRSMQGFPFYDKPMRIQYAKTDSDIIAK 90
>gi|281500860|pdb|3K0J|A Chain A, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500861|pdb|3K0J|B Chain B, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500862|pdb|3K0J|C Chain C, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
gi|281500863|pdb|3K0J|D Chain D, Crystal Structure Of The E. Coli Thim Riboswitch In
Complex With Thiamine Pyrophosphate And The U1a
Crystallization Module
Length = 96
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 77/89 (86%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SL+ +FS++G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 66
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAK 96
A+R MQ FPFYDKPMRIQYAK+ SD +AK
Sbjct: 67 ALRSMQGFPFYDKPMRIQYAKTDSDIIAK 95
>gi|171849013|pdb|3BO2|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group
I Intron
gi|171849018|pdb|3BO3|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group
I Intron
gi|171849022|pdb|3BO4|A Chain A, A Relaxed Active Site Following Exon Ligation By A Group
I Intron
gi|290790099|pdb|3IIN|A Chain A, Plasticity Of The Kink Turn Structural Motif
Length = 95
Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 57/89 (64%), Positives = 77/89 (86%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SL+ +FS++G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 5 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATN 64
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAK 96
A+R MQ FPFYDKPMRIQYAK+ SD +AK
Sbjct: 65 ALRSMQGFPFYDKPMRIQYAKTDSDIIAK 93
>gi|302511081|ref|XP_003017492.1| hypothetical protein ARB_04373 [Arthroderma benhamiae CBS 112371]
gi|291181063|gb|EFE36847.1| hypothetical protein ARB_04373 [Arthroderma benhamiae CBS 112371]
Length = 240
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 81/243 (33%), Positives = 133/243 (54%), Gaps = 26/243 (10%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQ 71
+ ++NL E+IK E+LK +L +FS+YG I ++VA K +GQA++VF V +A+ A+ +
Sbjct: 1 MLVRNLEERIKVEQLKEALTEIFSEYGSILEIVAKTNLKAKGQAFIVFDNVDSATRAIDE 60
Query: 72 MQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAE--EAQQ--- 125
+ F ++KPM ++YAK+KSD V +E G K+++ + ERK+ E EAQ+
Sbjct: 61 VNGFELFEKPMVLEYAKTKSDATVMREGGDEELEAHKRRRLAEKERKQAQEALEAQKKLK 120
Query: 126 ----------------SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
+ G G + G AA E PN ILF++ LP
Sbjct: 121 RPAGAAGTAGGPDSRPAKAQKGAGLKPTGAAAAP---VIPDEYLPPNKILFLRELPETYD 177
Query: 170 SSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITP-QNPMAITF 228
+ L +F ++PGFKEVRM+ + GIAFVE+E++ + A +A G + + P+ +T+
Sbjct: 178 ADGLSAIFGRFPGFKEVRMVPGRKGIAFVEYENESGAISAKEATSGMALGENEKPIKVTY 237
Query: 229 AKK 231
++
Sbjct: 238 QRQ 240
>gi|449295579|gb|EMC91600.1| hypothetical protein BAUCODRAFT_38709 [Baudoinia compniacensis UAMH
10762]
Length = 239
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 84/236 (35%), Positives = 133/236 (56%), Gaps = 9/236 (3%)
Query: 4 GD-IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
GD IPP+ TIYIKNL+E +K L +L LF +G I D+VA K+ K +GQA++V+ V
Sbjct: 5 GDEIPPSATIYIKNLDEDVKLTTLVPALRELFEDFGNIIDIVAKKSVKRKGQAFIVYDSV 64
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAE 121
AA +A +M +F + KPM I++AK++SD V +E+G E + E +RK+ E
Sbjct: 65 DAAQDAKDEMNSFEIFGKPMHIEFAKTRSDATVLRENGEEALEEHMTARLEVKKRKQDEE 124
Query: 122 EAQQSS----MANGTGAQSNGGTAASFRNANT--QETAAPNNILFIQNLPHETTSSMLEM 175
+ + +A T A+ A + A +E PN IL++++LP + L
Sbjct: 125 AEKAKAAAKRVATETLAERPAKAAKVAQPAGIVPEEYLPPNKILYLRDLPEDYGKDALTA 184
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
++ ++PGFKEVR + + IAFVE++D+ + A A G + Q + +TF +K
Sbjct: 185 IYSRFPGFKEVRTVPTRKTIAFVEYDDESGAIAAKDATGGMTLGEQ-AIKVTFQRK 239
>gi|380483560|emb|CCF40546.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 246
Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 78/245 (31%), Positives = 133/245 (54%), Gaps = 25/245 (10%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y++NL E++K + LK +L +FS+YG + ++VA K +GQA+VVF++ AA
Sbjct: 6 PIATVYVRNLEERVKVDLLKGALLQIFSEYGNVIEIVAKTNLKAKGQAFVVFADPEAARK 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS-----------FVPREKKKKQEEKAER 116
A+ ++Q F ++KPM++ A+++SD K G ++KKK E E+
Sbjct: 66 AIEEVQGFELFEKPMQLALARTRSDATVKTAGDDEEFELHKRRRLAEKDKKKAYEAAEEQ 125
Query: 117 KRR---------AEEAQQSSMANGTGAQS-NGGTAASFRNANTQETAAPNNILFIQNLPH 166
KR A++ + A GTG +S N T A + E PN ILF+QNLP
Sbjct: 126 KRLKRPGPSGAVAQDNRPVKAARGTGLKSTNPSTTAVIPD----EYLPPNKILFVQNLPE 181
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226
+ + +F ++ GF+EVR++ + GIAFVE+E + + A + G + + + +
Sbjct: 182 DYDVDAVTSIFGRFEGFREVRLVPGRRGIAFVEYEGEQGAITAKENTAGMVLGDSHTIKV 241
Query: 227 TFAKK 231
T+ ++
Sbjct: 242 TYQRQ 246
>gi|115387505|ref|XP_001211258.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
gi|114195342|gb|EAU37042.1| conserved hypothetical protein [Aspergillus terreus NIH2624]
Length = 254
Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 80/241 (33%), Positives = 132/241 (54%), Gaps = 21/241 (8%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N ++NL E+IK + LK +L +FS+YG I ++VA K +GQA++VF V +A+ A
Sbjct: 17 NHLTQVRNLEERIKVDNLKEALSEIFSEYGNILEIVAKTNLKAKGQAFIVFDNVESATRA 76
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAE--EAQQ 125
+ ++ F +DKPM + YAK++SD V +E G K+++ + ERK+ E EAQ+
Sbjct: 77 IDEINGFELFDKPMVLDYAKTRSDATVLREGGEDELEVHKRRRLAEKERKQAHEALEAQK 136
Query: 126 --------------SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSS 171
+ A G G + G AA+ E PN ILF+++LP
Sbjct: 137 KLKRPPGAPEAARPAKTAKGAGLKPTSGAAAAV---IPDEYLPPNKILFLRDLPDNADQD 193
Query: 172 MLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITFAK 230
L +F ++ GF+EVR++ + GIAFVE+E++ + A +A G + Q P+ +T+ +
Sbjct: 194 SLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGEQGKPIRVTYQR 253
Query: 231 K 231
+
Sbjct: 254 Q 254
>gi|453081177|gb|EMF09226.1| small nuclear ribonucleo protein U [Mycosphaerella populorum
SO2202]
Length = 236
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 133/237 (56%), Gaps = 18/237 (7%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
D+ PN T+Y++NL+EKIK L ++L +F + + DV+A K+ K RGQA+VVF
Sbjct: 2 ADLAPNATLYVRNLDEKIKIPALIKALRDIFGEVNPVVDVIAKKSIKRRGQAFVVFESAD 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERK----- 117
AA A+ +Q +P+ + +AK++SD V KE+G KK++ + ERK
Sbjct: 62 AAQEAMDTLQGLDVLGRPLELAFAKTRSDATVVKEEGEEALEAHKKQRLAEKERKQALEA 121
Query: 118 ------RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSS 171
A+ SS+A A+S+ TA A E P+ IL +++LP + T
Sbjct: 122 QEAAAKSAKRAAEPSSLAE-RPAKSSKPTA----GAMADEYNPPHKILILRDLPSDYTKE 176
Query: 172 MLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228
+ +FQ++PG KEVRM+ + G+AF E+ D++++++A +A+ G + + + +TF
Sbjct: 177 AVTAVFQRFPGLKEVRMVPGRSGLAFAEYNDEIEAAVAREAMHGVTLGDKT-VRVTF 232
>gi|156088599|ref|XP_001611706.1| U2 small nuclear ribonucleoprotein B' [Babesia bovis T2Bo]
gi|154798960|gb|EDO08138.1| U2 small nuclear ribonucleoprotein B', putative [Babesia bovis]
Length = 213
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 73/228 (32%), Positives = 123/228 (53%), Gaps = 27/228 (11%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
TG+ PN T+Y+ NL+++I +L++ LY YG I D+ A +T KLRGQA+V FSE+
Sbjct: 9 TGESLPNHTLYVSNLDDRIHVNDLRKLLYEFLIPYGEIVDISARRTQKLRGQAFVSFSEI 68
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
+A +A + + F D+P+++ YA+++ + K + + R+
Sbjct: 69 ASAISAFKGVNGRSFLDRPLKVAYARNQG-----------YKSMKPAECYRLLTSARSLP 117
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
++Q + + A S GG + LF++NL + +E+LFQQYPG
Sbjct: 118 SEQVMIEDTLDANSEGGE---------------RHTLFVENLHPDMNKMSVELLFQQYPG 162
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
+K+ R +E K +AFV+F Q +A+Q LQGF ++ + + I+FAK
Sbjct: 163 YKDTRFVEGK-CVAFVDFATAYQGEVALQGLQGFSVSHSHALRISFAK 209
>gi|340521610|gb|EGR51844.1| predicted protein [Trichoderma reesei QM6a]
Length = 298
Score = 134 bits (336), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 70/210 (33%), Positives = 118/210 (56%), Gaps = 14/210 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y+ NL E++K E L +L +FS++G + D+VA + K +GQA+VVF E +AA
Sbjct: 62 PISTVYVHNLEERVKPEVLTDALKTIFSEFGNVVDIVAKRNLKAKGQAFVVFDEPSAAHK 121
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA--QQ 125
A+ +++ F + KPMR+ A+ +SD + GS + K+ + + KR+A EA +Q
Sbjct: 122 AIEEVEGFELFGKPMRVAMARMQSDKTVELHGSSEDLDAHKRHRQAEKDKRKALEAADEQ 181
Query: 126 SSMANGTGAQSNGGTAASFRNANTQETAA------------PNNILFIQNLPHETTSSML 173
+ S + S + + + T+A PN ILF+QN+P E L
Sbjct: 182 RQLKRAAAGASEARPSKSVKPSGLKSTSAPASAVVPDEYLPPNKILFVQNVPDEYDVEGL 241
Query: 174 EMLFQQYPGFKEVRMIEAKPGIAFVEFEDD 203
+F ++ GF+E+R++ + GIAFVE+E++
Sbjct: 242 TAIFGRFDGFREIRLVPGRRGIAFVEYENE 271
>gi|84995232|ref|XP_952338.1| U1/2 small nuclear ribonucleoprotein [Theileria annulata strain
Ankara]
gi|65302499|emb|CAI74606.1| U1/2 small nuclear ribonucleoprotein, putative [Theileria annulata]
Length = 206
Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 128/227 (56%), Gaps = 28/227 (12%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
T DI P QT+Y+ NL+++I + LK+ +Y LF YG I D+VA KT LRGQA+V+FSE+
Sbjct: 7 TLDILPCQTLYVYNLDDQIHIDVLKKLVYELFVPYGIIVDIVARKTKTLRGQAFVIFSEI 66
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
++A+ A++ + +K ++I+YAK++S + + +
Sbjct: 67 SSATAALKGLNGRKILNKVLKIEYAKNRS-----------------------YKTLKPSD 103
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
+ S AN + R++ T E+ + LF+QN+PH+ + LE+LF+QYPG
Sbjct: 104 YYKMSKANRGKFKPISDFPDELRSSGTDESHS----LFVQNIPHDMSRESLELLFKQYPG 159
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
F+ R IE + +AFV++ Q+ +A++ L GF+++ + + I+ A
Sbjct: 160 FRGCRFIEGR-FVAFVDYSMASQAEIALEGLNGFRVSHTHALQISLA 205
>gi|397638775|gb|EJK73209.1| hypothetical protein THAOC_05179 [Thalassiosira oceanica]
Length = 193
Score = 133 bits (335), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 71/187 (37%), Positives = 114/187 (60%), Gaps = 21/187 (11%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPK-----LRGQAWVVF 59
+ PP+QT+Y+ N++ +KK +LKRSL LFS++G++ DV+ L+ LRGQAWV+F
Sbjct: 13 NFPPSQTLYLSNIDWAVKKPQLKRSLLSLFSRHGKVLDVICLRGNGSGGKCLRGQAWVIF 72
Query: 60 SEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRR 119
+AA+ A+ + F F+ +P+ + Y+ SD +AK +G++ +K +EK KR+
Sbjct: 73 DSQSAATQALTAERGFVFFGRPLMVNYSAETSDRIAKRNGTY-----GQKTKEKRAAKRK 127
Query: 120 AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQ 179
EE ++ A+ + TA S + ++T P+ +L + LP E TS MLEMLF+Q
Sbjct: 128 MEETEEGC------AKKSARTAESNQGSDT-----PSPVLLAKELPDEVTSVMLEMLFRQ 176
Query: 180 YPGFKEV 186
Y G+KEV
Sbjct: 177 YGGYKEV 183
>gi|322709895|gb|EFZ01470.1| small nuclear ribonucleoprotein [Metarhizium anisopliae ARSEF 23]
Length = 242
Score = 133 bits (334), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 14/225 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y+ NL E++K + L SL +FS++G + D+VA K K +GQA++VFS+ +A +
Sbjct: 6 PISTVYVHNLEERVKIQPLTESLKTIFSEFGDVVDIVAKKNLKAKGQAFIVFSDPDSARD 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+ ++Q F +DKPM++ AK++SD + + S E K+ + KR A EA S
Sbjct: 66 AIEELQGFQLFDKPMKLSLAKTRSDKSIEMNCSLDEFEAHKRNRLSEKEKRLALEAADSE 125
Query: 128 MANGTGAQSNG--------------GTAASFRNANTQETAAPNNILFIQNLPHETTSSML 173
GA S T + E PN ILF+QN+P E L
Sbjct: 126 RQPKRGAGSTADNRPSKLSRPSGLKSTGPATSQVIPDEYLPPNKILFLQNIPEEYDVDAL 185
Query: 174 EMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
+F ++ GF+E+R++ + GIAFVE+E + + A + G K+
Sbjct: 186 GAIFGRFEGFREIRLVPGRRGIAFVEYEAEQGAIDAKENTSGMKL 230
>gi|154283345|ref|XP_001542468.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150410648|gb|EDN06036.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 245
Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust.
Identities = 83/238 (34%), Positives = 128/238 (53%), Gaps = 23/238 (9%)
Query: 14 IKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQ 73
++NL E+IK E LK +L +FS+YG I D+VA K +GQA+VVF V +A+ A+ ++
Sbjct: 11 VRNLEERIKIESLKEALTEIFSEYGNIIDIVAKTNLKAKGQAFVVFDNVDSATRAIEEIN 70
Query: 74 NFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAE--EAQQ----- 125
F ++KPM + YAK++SD V KE G K+K+ + ERK+ E EAQ+
Sbjct: 71 GFELFEKPMVLDYAKTRSDATVLKEQGEAELEAHKRKRLAEKERKQAQEALEAQKKLKRG 130
Query: 126 -----------SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLE 174
S + GTG + + AA E PN ILF++ +P L
Sbjct: 131 AAAPGGAETRPSKVTRGTGLKPSNAAAAPV---IPDEYLPPNKILFLREIPDSLDQEGLT 187
Query: 175 MLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITFAKK 231
+F ++ GFKEVRM+ + GIAFVE+E + + A +A G + P+ +T+ ++
Sbjct: 188 AVFGRFEGFKEVRMVPGRKGIAFVEYEAETGAISAKEATSGMPLGENGKPIRVTYQRQ 245
>gi|358378115|gb|EHK15797.1| hypothetical protein TRIVIDRAFT_195742 [Trichoderma virens Gv29-8]
Length = 242
Score = 132 bits (333), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 130/238 (54%), Gaps = 15/238 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y++NL E++K E L +L +FS++G + D+VA + K +GQA++VF + AA N
Sbjct: 6 PISTVYVQNLEERVKPEVLAEALKTIFSEFGNVVDIVAKRNLKAKGQAFIVFDQPGAAHN 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA--QQ 125
A+ +++ F + KPMR+ A+ +SD + + + E K+ + + KR+A EA +Q
Sbjct: 66 AIEEVEGFELFGKPMRVAMARMQSDKTVEMNCNTDEFEAHKRHRQAEKDKRKALEAADEQ 125
Query: 126 SSMANGTGAQSNGGTAASFRNANTQETAA------------PNNILFIQNLPHETTSSML 173
+ G + S + + T+A PN ILFIQN+P E L
Sbjct: 126 RHLKRAAGGAPEARPSKSAKPLGLKSTSAPASAVVPDEYLPPNKILFIQNVPDEYDVDAL 185
Query: 174 EMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+F ++ GF+E+R++ + GIAFVE+E++ + A + G + P+ +T+ ++
Sbjct: 186 NAVFGRFDGFREIRLVPGRRGIAFVEYENEQGAITAKENTAGMALG-DKPIKVTYQRQ 242
>gi|310798243|gb|EFQ33136.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 246
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 72/241 (29%), Positives = 126/241 (52%), Gaps = 17/241 (7%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y++NL E+ K ++LK +L +FS+YG + D+VA K +GQA+VVF + AA
Sbjct: 6 PIATVYVRNLEERAKVDQLKDALLQIFSEYGNVIDIVAKTNLKAKGQAFVVFDDPEAARK 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS----------FVPREKKKKQEEKAERK 117
A+ ++Q F ++KPM++ A+++SD K G+ + + KKK E AE +
Sbjct: 66 AIEEVQGFELFEKPMQLSLARTRSDATVKASGNDEEFELHKRRRLAEKDKKKAYEAAEEQ 125
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAA-------PNNILFIQNLPHETTS 170
+R + + A ++ N TA PN ILF+QNLP +
Sbjct: 126 KRLKRPGPGGATASDNRPTKAARGAGLKSTNPSTTAVIPDEYLPPNKILFVQNLPEDYDI 185
Query: 171 SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
+ +F ++ GF+EVR++ + GIAFVE++ + + A + G + + +T+ +
Sbjct: 186 DAVTSIFGRFEGFREVRLVPGRRGIAFVEYDGEQGAITAKENTAGMVLGDTYTIKVTYQR 245
Query: 231 K 231
+
Sbjct: 246 Q 246
>gi|294911645|ref|XP_002778029.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
gi|239886150|gb|EER09824.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
Length = 418
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 88/283 (31%), Positives = 142/283 (50%), Gaps = 58/283 (20%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D PPN+T+YI NLN+++K EELK+S+ L G + D +A+++ + RGQ +VVFS
Sbjct: 138 DFPPNETLYINNLNDRVKPEELKKSILELCKSCGTVIDCIAMRSLRRRGQVFVVFSSKEE 197
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQE--EKAERKRR--- 119
+S+A++++Q Y K MR+ YAK+KSD +AK++G++V R+K+K +E E A+ K +
Sbjct: 198 SSSAMKKLQGHSLYSKNMRVSYAKTKSDAIAKKEGTYVRRDKEKLKEMREAAQAKLQPDA 257
Query: 120 ----------------------AEEAQQSSMANGTGAQSNGG------------------ 139
A A M + GG
Sbjct: 258 AAQAAAAAAAAAAAAKAAVPGGAMPAGMQPMVPNFASVPAGGFQGMPFNIGQQQQQQPAQ 317
Query: 140 -----TAASFRNAN------TQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM 188
TA F N + Q + PN LF++NLP T L +F+ YPGF+ R+
Sbjct: 318 QKKLTTAEDFFNTSVSAPKVVQHSNVPNKTLFVENLPPRCTPEKLTAVFKSYPGFEGTRV 377
Query: 189 IEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
I A+ + F++F + Q++MA A + + Q + I++A+K
Sbjct: 378 I-AERQVGFIDFSSEFQATMAKNARGDYTMEGQL-VKISYARK 418
>gi|83772778|dbj|BAE62906.1| unnamed protein product [Aspergillus oryzae RIB40]
Length = 248
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 79/237 (33%), Positives = 135/237 (56%), Gaps = 23/237 (9%)
Query: 14 IKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQ 73
++NL E++K ++LK +L +FS+YG + D+VA K +GQA++VF V +ASNA+ ++
Sbjct: 16 VRNLEERVKVDQLKEALEEIFSEYGNVIDIVAKTNLKAKGQAFIVFDSVESASNAIDEIN 75
Query: 74 NFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAE--EAQQ----- 125
F +DKPM + +AK++SD V +E G K+++ + ERK+ E EAQ+
Sbjct: 76 GFELFDKPMVLDFAKTRSDATVLREGGEDELEAHKRRRLAEKERKQAHEALEAQKKLKRP 135
Query: 126 ---------SSMANGTGAQ-SNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEM 175
+ A G G + ++G TAA + E PN ILF+++LP L
Sbjct: 136 PGAPDSTRPAKTAKGAGLKPTSGATAAVIPD----EYLPPNKILFLRDLPDTADQESLTA 191
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITFAKK 231
+F ++ GF+EVR++ + GIAFVE+E++ + A +A G + P+ +T+ ++
Sbjct: 192 VFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGESGKPIRVTYQRQ 248
>gi|121713748|ref|XP_001274485.1| small nuclear ribonucleoprotein U)1a,U)2b [Aspergillus clavatus NRRL
1]
gi|119402638|gb|EAW13059.1| small nuclear ribonucleoprotein U)1a,U)2b [Aspergillus clavatus NRRL
1]
Length = 1390
Score = 132 bits (332), Expect = 1e-28, Method: Composition-based stats.
Identities = 80/237 (33%), Positives = 135/237 (56%), Gaps = 23/237 (9%)
Query: 14 IKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQ 73
++NL E+IK ++LK +L +FS+YG I ++VA K +GQA++VF +V +A+ A+ ++
Sbjct: 1158 VRNLEERIKVDQLKEALAEIFSEYGNILEIVAKTNLKAKGQAFIVFDDVESATRAIDEVN 1217
Query: 74 NFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAE--EAQQ----- 125
F +DKPM + YAK+KSD V +E GS K+++ + ERK+ E EAQ+
Sbjct: 1218 GFDLFDKPMVLDYAKTKSDATVLREGGSEELEVHKRRRLAEKERKQAHEALEAQKKLKRP 1277
Query: 126 ---------SSMANGTGAQ-SNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEM 175
+ G G + + G TAA + E PN ILF+++LP L
Sbjct: 1278 PGPVDTARPAKTVKGAGLKPTTGATAAVIPD----EYLPPNKILFLRDLPDSADQDSLTA 1333
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ-NPMAITFAKK 231
+F ++ GF+EVR++ + GIAFVE+E++ + A +A G + + P+ +T+ ++
Sbjct: 1334 VFGRFEGFREVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGDEGKPIRVTYQRQ 1390
>gi|134084288|emb|CAK43175.1| unnamed protein product [Aspergillus niger]
Length = 255
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 82/250 (32%), Positives = 132/250 (52%), Gaps = 28/250 (11%)
Query: 6 IPPNQTI--------YIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWV 57
IPPN T ++NL E+IK ++LK +L +FS+YG + ++VA K +GQA+V
Sbjct: 10 IPPNCTSQSLRTTPPSVRNLEERIKVDQLKEALEEIFSEYGTVLEIVAKTNLKAKGQAFV 69
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
VF V AA+ A+ ++ F +DKPM + YAK++SD +G E K++ AE+
Sbjct: 70 VFDTVEAATRAIDEINGFELFDKPMVLDYAKTRSDMTVLREGGEDELEAHKRR-RLAEKA 128
Query: 118 RRAEEAQQ---------------SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQ 162
A EAQ+ + A G G + G AA+ E PN ILF++
Sbjct: 129 HEALEAQKKLKRPPGAPTEPGRPAKTAKGAGLKPTSGAAAAV---IPDEYLPPNKILFLR 185
Query: 163 NLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN 222
+LP L +F ++ GF+EVR++ + GIAFVE+E++ + A +A G +
Sbjct: 186 DLPDTADQDSLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATSGMPMGEAG 245
Query: 223 -PMAITFAKK 231
P+ +T+ ++
Sbjct: 246 KPIRVTYQRQ 255
>gi|85109011|ref|XP_962704.1| hypothetical protein NCU08034 [Neurospora crassa OR74A]
gi|28924315|gb|EAA33468.1| hypothetical protein NCU08034 [Neurospora crassa OR74A]
gi|39979161|emb|CAE85534.1| related to small nuclear ribonucleoprotein snRNP U1A [Neurospora
crassa]
Length = 247
Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 76/230 (33%), Positives = 126/230 (54%), Gaps = 23/230 (10%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y++NL E++K E LK +L +FS+YG + D+VA K +GQA+VVF + +A
Sbjct: 8 PIATVYVRNLEERVKPEPLKEALRTIFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQA 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS----------FVPREKKKKQEEKAERK 117
A+ ++Q F ++KPM + A+++SD + G+ + + KK+ E AE++
Sbjct: 68 AIDELQGFELFEKPMVVTLARTRSDATVIQTGNEEEFDQHKRRRIAEKDKKRALEVAEQQ 127
Query: 118 RR--------AEEAQQSSMANGTGAQSNG-GTAASFRNANTQETAAPNNILFIQNLPHET 168
R A +A+ + G G ++ G G AA + E PN ILF+QNLP +
Sbjct: 128 NRLKRPLQGAAPDARPAKNQRGAGLKATGQGPAAVVPD----EYLPPNRILFVQNLPDDF 183
Query: 169 TSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
T L +F ++ GF+EVR + + GIAFVE++ + + A + G +
Sbjct: 184 TKDDLTTIFSRFDGFREVRTVPGRSGIAFVEYDAEAGAITAKENTAGMAL 233
>gi|429327511|gb|AFZ79271.1| U1/2 small nuclear ribonucleoprotein, putative [Babesia equi]
Length = 207
Score = 132 bits (331), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 78/226 (34%), Positives = 125/226 (55%), Gaps = 26/226 (11%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI P+QT+Y+ NL+++I EL + LY LF YG I D+VA KT LRGQA++VFSE+T+
Sbjct: 8 DIVPSQTLYVTNLDDQIHVRELVKLLYELFCPYGYIIDIVARKTKTLRGQAFIVFSEITS 67
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+ A++ + K ++I Y+K+KS K + R + + Q
Sbjct: 68 ATAALKGLNGRSILAKKIKIVYSKNKS--------------YKAMKPSDYYRIGKISKLQ 113
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ + T + AS + ++T LF++N+P + +E+LF QYPGFK
Sbjct: 114 AKPVISST--TEDKPAEASSKESHT---------LFVENIPPDINKDGVELLFNQYPGFK 162
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
R IE + +AF++F Q+ A+Q LQGF+++ + + I+FAK
Sbjct: 163 GCRFIEGR-CVAFIDFALVSQAEAALQGLQGFRMSHNHALHISFAK 207
>gi|358060915|dbj|GAA93431.1| hypothetical protein E5Q_00072 [Mixia osmundae IAM 14324]
Length = 298
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 90/281 (32%), Positives = 134/281 (47%), Gaps = 70/281 (24%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN T+Y++ L+ IKKE+LKR L+ LFS +G + DVVALK PK+RGQA+VV+ +T+A
Sbjct: 11 LPPNTTLYVQGLDASIKKEDLKRLLHSLFSVHGHLLDVVALKGPKMRGQAFVVYESLTSA 70
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKK----KKQEEKAERKR-- 118
+ A R+ F +PMRI YAK+KS + +E G V + K K QEE KR
Sbjct: 71 TTARRREDGAIFCGQPMRISYAKTKSHATIERESGKDVLYQIKMGIIKSQEEATANKRKG 130
Query: 119 ------------------RAEEAQQSSMANGTGAQ------------------------- 135
R EEA + A G +
Sbjct: 131 KLVVSDAQNREETTRKRQRDEEAGKKKRAGRAGVEGEEDEEEEDEDDDGDDETEPSAGLA 190
Query: 136 ------SNGGTAASFRNANTQE--TAAPN---------NILFIQNLPHETTSSMLEMLFQ 178
++GG +++ +E AA N +IL + LP ETT L +LFQ
Sbjct: 191 KKPRTVADGGEEEMQEDSDKEEADVAAANGQPAQRPSSHILAVHGLPQETTEDSLRLLFQ 250
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIT 219
QY G R++ GI + +E +++A++AL F+++
Sbjct: 251 QYAGLTGARIVR---GIGQIVYESPAHAAVALEALNQFQVS 288
>gi|393215680|gb|EJD01171.1| RNA-binding domain-containing protein [Fomitiporia mediterranea
MF3/22]
Length = 268
Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 84/267 (31%), Positives = 133/267 (49%), Gaps = 40/267 (14%)
Query: 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61
++G I PN T+Y+ NLN+KI K+ELK+ L+ F+ YGR+ D++A+K+ +++GQA+VVF++
Sbjct: 1 MSGAIAPNPTLYVNNLNDKINKDELKKQLFSFFTTYGRVIDIIAIKSARMKGQAFVVFAD 60
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVA-KEDGSFVP-------REKKKKQEEK 113
+ A+ A+R + FYDKP+ I YAKSKS V +ED F+P R
Sbjct: 61 LPEATTAMRACEGMIFYDKPLHIHYAKSKSYAVLRREDPDFIPPNPVGQSRLLNGTSASN 120
Query: 114 AERKRRAEEAQQSSMANGT---------GAQSNGGTAASFRNANTQETAA---------- 154
KR EE ++ +A+G G + G + N
Sbjct: 121 IVEKRSREEEEEEDLASGARQPKREKPNGDEDGDGEEMELEDENDSGAQEQQQQAAQAVP 180
Query: 155 -----PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--------KPGIAFVEFE 201
P+ L NLP E T +L +LFQQY GF + ++ K +A V ++
Sbjct: 181 PVLEQPSARLLCTNLPMEVTDDVLGVLFQQYQGFISTHVAQSPTPNAAGQKVKMAQVIYD 240
Query: 202 DDVQSSMAMQALQGFKITPQNPMAITF 228
+S+A +AL GF + M++ +
Sbjct: 241 SAELASVAKEALDGFTLKKGWKMSVAY 267
>gi|398391875|ref|XP_003849397.1| hypothetical protein MYCGRDRAFT_75568 [Zymoseptoria tritici IPO323]
gi|339469274|gb|EGP84373.1| hypothetical protein MYCGRDRAFT_75568 [Zymoseptoria tritici IPO323]
Length = 233
Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 79/234 (33%), Positives = 129/234 (55%), Gaps = 16/234 (6%)
Query: 7 PPNQTIYIKNLNEK-IKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
PPN T+Y++NL E+ + LK + + G + D+ A K+ K RGQA+VV+S V A
Sbjct: 6 PPNATLYLRNLPERQVSIPLLKEGIREIVEDLGTVLDIRAGKSLKQRGQAFVVYSRVEEA 65
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKKKQEEKAERKRRAEEA- 123
+ A +Q+ + + +++QYA+++SD V K+DG E KK + + RK+ EEA
Sbjct: 66 TEAHDILQDIELFGRKIQVQYARARSDATVQKDDGEEALAEHKKVRLAEKARKQALEEAK 125
Query: 124 ------QQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
++ S+A + TA + + PN IL +++ P + L LF
Sbjct: 126 PVKRAAERDSIAERPAKANKAATAVA------DDYLPPNRILLLRDFPEGYGKTELTALF 179
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
Q+YPGFKE+RM+ + G+AF E+E++ QS+ A +AL G + + +TF KK
Sbjct: 180 QRYPGFKEIRMVPGRAGLAFAEYEEETQSAAAREALNGMSMG-DSKFKVTFQKK 232
>gi|322797045|gb|EFZ19352.1| hypothetical protein SINV_13322 [Solenopsis invicta]
Length = 152
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 76/155 (49%), Positives = 99/155 (63%), Gaps = 9/155 (5%)
Query: 83 RIQYAKSKSDCVAKEDGSFVPREKKKKQ-----EEKAER-KRRAEEAQQSSMANGTGAQS 136
RIQYAK+ SD +AK G+F R KK K+ +E+A+R K+RA+E Q+ + G +
Sbjct: 1 RIQYAKTDSDIIAKMKGTFAERPKKPKRVIPVADEEAKRAKKRAKE--QAKHSQQIGYHA 58
Query: 137 NGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIA 196
+ N E PN ILF+ NLP ET+ ML MLF Q+PGFKEVR++ + IA
Sbjct: 59 SVPQHPGLVNTAVPEQP-PNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIA 117
Query: 197 FVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
FVEFE++VQS A ALQGFKITP + M I+FAKK
Sbjct: 118 FVEFENEVQSGAAKDALQGFKITPSHAMKISFAKK 152
>gi|358396862|gb|EHK46237.1| hypothetical protein TRIATDRAFT_307061 [Trichoderma atroviride IMI
206040]
Length = 242
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 73/238 (30%), Positives = 134/238 (56%), Gaps = 15/238 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y++NL E++K E L +L +FS++G + D+VA + K +GQA++VF + +AA N
Sbjct: 6 PITTVYVQNLEERVKPEVLSEALKTIFSEFGNVIDIVAKRNLKAKGQAFIVFDQPSAAQN 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA--QQ 125
A+ +++ F + KP+R+ A+ +SD + + S E K+ + + KR+A EA +Q
Sbjct: 66 AIEEVEGFELFGKPLRVAMARMQSDRTVEINCSKDELETHKRHRQAEKDKRKALEAADEQ 125
Query: 126 SSMANGTGAQSNGGTAASFRNANTQETAA------------PNNILFIQNLPHETTSSML 173
+ G A + + S + + + T+A PN ILFIQN+P E L
Sbjct: 126 RQLKRGAAAAAEARPSKSAKPSGLKSTSAPASAVVPDEYLPPNKILFIQNVPDEYDIDGL 185
Query: 174 EMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+F ++ GF+E+R++ + GIAFVE++++ + A + G + P+ +T+ ++
Sbjct: 186 NAIFGRFDGFREIRLVPGRRGIAFVEYQNEQGAITAKENTAGM-LLADKPIKVTYQRQ 242
>gi|400600067|gb|EJP67758.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 244
Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 78/243 (32%), Positives = 131/243 (53%), Gaps = 23/243 (9%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y++NL E++K E L +L +FS++GR+ DVVA K +GQA+VVF +A
Sbjct: 6 PISTVYVQNLEERVKPEPLTDALRTVFSEFGRVVDVVAKTNLKAKGQAFVVFDAPASARE 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ-- 125
AV ++ FP +DKPMR+ A+++SD + +GS E K+ + K++A EA +
Sbjct: 66 AVEEIDGFPLFDKPMRLAVARTRSDKTVEMNGSAEELEAHKQHRLAEKEKKKAIEAAEGT 125
Query: 126 ----------------SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
S +A +G +S A+ E PN ILF+QN+P E
Sbjct: 126 KHGGKRGAGAGADGRPSKIAKPSGLKSTSVAQAA---VIPDEYLPPNKILFLQNVPDEYH 182
Query: 170 S-SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228
L +F ++ GF+EVR++ + GIAFVE++ + + A ++ G + +N + +T+
Sbjct: 183 DVEALAGIFGRFDGFREVRLVPGRRGIAFVEYDAEQGAVAAKESTAGMTLGDKN-IKVTY 241
Query: 229 AKK 231
++
Sbjct: 242 QRQ 244
>gi|296005347|ref|XP_002809001.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium
falciparum 3D7]
gi|225631938|emb|CAX64282.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium
falciparum 3D7]
Length = 449
Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 82/281 (29%), Positives = 142/281 (50%), Gaps = 57/281 (20%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN+T+YIKNLN+++K +E+K++L LF+ YG I D++ +K+ +GQAWVV+ + A
Sbjct: 171 IPPNETLYIKNLNDRVKTDEMKKNLKDLFNTYGEIKDLIVMKSFWRKGQAWVVYDDKECA 230
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKA-ERKRRAEEAQ 124
+ A+ +Q + + K M+I ++ +KSD AK DG+FV R K+ K+ +K ER+++ +E
Sbjct: 231 TKALNALQGYVLFGKIMQINFSHNKSDIHAKRDGTFVERSKEPKKPKKILEREQKQKEIF 290
Query: 125 QSSMANGTGAQSNG-----------------------------GTAASFRNANTQETAAP 155
+ N Q N A + + N + P
Sbjct: 291 EQMHKNYLEMQKNNFNMLNGNKEINKPEIIDLSQMDKQTLIAKAQAKANEDKNKKNEELP 350
Query: 156 NN-------------------------ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIE 190
NN ILF++N+ + LF+ Y GF E R+I
Sbjct: 351 NNNIFSSYYQMNNIAPVQNYPVVMPYKILFVENVVENVDTQAFNDLFKNYAGFVEARIIP 410
Query: 191 AKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+ +AFV+F D+ ++ AM+A+Q +++ + + I++AK+
Sbjct: 411 QR-NVAFVDFTDETTATFAMKAVQNYELQ-GSKLKISYAKR 449
>gi|189339509|pdb|2K3K|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd1
Length = 104
Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 70/100 (70%), Positives = 84/100 (84%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQTIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +ASN
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASN 64
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK 107
A+R MQ FPFYDKPM+I Y+KS SD VAK G+F R KK
Sbjct: 65 ALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKK 104
>gi|123505091|ref|XP_001328901.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121911850|gb|EAY16678.1| hypothetical protein TVAG_066830 [Trichomonas vaginalis G3]
Length = 238
Score = 130 bits (326), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/231 (32%), Positives = 120/231 (51%), Gaps = 12/231 (5%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+YIK +N+ + +L ++ FS YG+I D+ A K K RGQAWV + + +A NA R
Sbjct: 9 TLYIKRINDNVSINQLILHVFAYFSPYGQIIDISASKAIKKRGQAWVTYQNIESAINAKR 68
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF--VPREKKKKQEEKAERKRRAEEAQQSSM 128
+ + P+ IQ+AK ++ K +G++ R K+ Q+ + + +
Sbjct: 69 DLNGIYIFSTPISIQFAKKRNINTLKLNGTYNSYGRRKEIIQDNEVRKLTTGPIPYHWDI 128
Query: 129 ANGTGAQSNGGTAASFRNANTQETA---------APNNILFIQNLPHETTSSMLEMLFQQ 179
G + +QE APN ILFIQN+P T ++L+ LF Q
Sbjct: 129 DMGGDDEEVTEMVRPLVQKISQEIVEETPKVTLQAPNKILFIQNIPENTDKAVLDFLFGQ 188
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
+PGF EVR + K IAFVE++ + QS++A+Q L GF+I + + I F+K
Sbjct: 189 FPGFVEVRTLPGKQTIAFVEYKTEEQSAVAIQELNGFEIENHH-LTIQFSK 238
>gi|256083949|ref|XP_002578197.1| small nuclear ribonucleoprotein U)1aU)2b [Schistosoma mansoni]
gi|353232716|emb|CCD80071.1| putative small nuclear ribonucleoprotein U)1a,U)2b [Schistosoma
mansoni]
Length = 328
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 56/99 (56%), Positives = 76/99 (76%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI N+NEKIK +ELK+SL +F Q+G+I D++ +T K+RGQA+VVF ++++AS
Sbjct: 56 PNNTIYINNMNEKIKCDELKKSLCAVFDQFGQILDIITSRTLKMRGQAFVVFDDISSAST 115
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK 106
A+R MQ FP Y+KPMRI +AK SD +AK G+FV R K
Sbjct: 116 ALRSMQGFPLYEKPMRIHFAKVDSDVIAKRKGTFVQRPK 154
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 56/86 (65%)
Query: 146 NANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQ 205
N T PN ILF+ NLP ++ +ML MLF Q+ G++EVRM+ + IAFVEF ++V+
Sbjct: 243 NPATIPDQPPNKILFLTNLPDDSDEAMLSMLFGQFTGYREVRMVPGRHDIAFVEFGNEVE 302
Query: 206 SSMAMQALQGFKITPQNPMAITFAKK 231
+S A LQGF I P + ITFAKK
Sbjct: 303 ASAAKLGLQGFNIRPGQAIRITFAKK 328
Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 46/83 (55%), Gaps = 9/83 (10%)
Query: 155 PNNILFIQNLPHETTSSMLE----MLFQQYPGFKEV---RMIEAKPGIAFVEFEDDVQSS 207
PNN ++I N+ + L+ +F Q+ ++ R ++ + G AFV F+D +S
Sbjct: 56 PNNTIYINNMNEKIKCDELKKSLCAVFDQFGQILDIITSRTLKMR-GQAFVVFDDISSAS 114
Query: 208 MAMQALQGFKITPQNPMAITFAK 230
A++++QGF + + PM I FAK
Sbjct: 115 TALRSMQGFPLY-EKPMRIHFAK 136
>gi|326433216|gb|EGD78786.1| hypothetical protein PTSG_01762 [Salpingoeca sp. ATCC 50818]
Length = 462
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 58/102 (56%), Positives = 77/102 (75%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+P N TIYI NLNEK+K++ELK++L +F Q+G+I +VA+K+ RGQA+VVF V +A
Sbjct: 170 LPENNTIYINNLNEKVKEDELKKALTAVFKQFGKILQIVAMKSYYRRGQAFVVFDSVDSA 229
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK 107
A+ MQ FPF KPMRI +AK+KSD +AK DG+F PREKK
Sbjct: 230 KAAISAMQGFPFVGKPMRINFAKTKSDVIAKRDGTFKPREKK 271
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/77 (45%), Positives = 52/77 (67%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN ILF+QN+P TT+ + LF+Q+ GFKEVR + ++P IAFVE+++ +QS A L
Sbjct: 386 PNAILFVQNIPAGTTAERITNLFKQFAGFKEVRTVPSRPDIAFVEYDNPMQSGYAKVQLH 445
Query: 215 GFKITPQNPMAITFAKK 231
+I P + + + FAKK
Sbjct: 446 QHEIAPGSKITVAFAKK 462
>gi|145475381|ref|XP_001423713.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124390774|emb|CAK56315.1| unnamed protein product [Paramecium tetraurelia]
Length = 270
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 75/216 (34%), Positives = 122/216 (56%), Gaps = 12/216 (5%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPN+T+YI LNEK+ EE++++L+ LFSQ G++ D++ K +RGQA+++ + AA
Sbjct: 45 PPNKTLYINRLNEKVTAEEMRQTLFALFSQSGKVLDIIVKKNILMRGQAFILMEDEEAAI 104
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS 126
A + N YDK M++ +AK KS ++K G + +EK ++ E K+R ++ +Q
Sbjct: 105 KAQKAFHNTQLYDKVMKVNFAKEKSYYISK--GDYEEKEKLPMSDKIKEHKKRIQDKRQR 162
Query: 127 SMANGTGAQSNGGTAA-------SFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQ 179
M N Q T + + N+ PN +LF++ L H LE F+
Sbjct: 163 EMIN-QKQQREAPTISMPLAVNQYYYIFNSSIPNQPNKVLFVEGL-HLVDFVNLEQHFRN 220
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG 215
+ GF+E R I+ K G+AFVEFED++Q++ + L G
Sbjct: 221 FYGFREFRGIKPK-GVAFVEFEDELQATNCLNELNG 255
>gi|403221977|dbj|BAM40109.1| U1/2 small nuclear ribonucleoprotein [Theileria orientalis strain
Shintoku]
Length = 206
Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 73/226 (32%), Positives = 125/226 (55%), Gaps = 28/226 (12%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI P QT+Y+ NLN+++ + LK+ +Y LF YG I D+VA +T LRGQA+VVF E+++
Sbjct: 9 DILPCQTLYVYNLNDQVHIDVLKKLVYELFIPYGIIVDIVARRTKNLRGQAFVVFREISS 68
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+ A++ + +K ++I+YAK++S K P + K + + + A E
Sbjct: 69 ATAALKGLNGRKVLNKVLKIEYAKNRSYKAMK------PSDYYKISKSSKSKSKIAPEYM 122
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+G ++ LF++N+P + + LE+LF+QYPGFK
Sbjct: 123 DEVRTDGN---------------------EESHTLFVENIPSDMSKDSLELLFRQYPGFK 161
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
R IE + +AFV++ Q+ +A++ LQGF+++ + + I+ AK
Sbjct: 162 NCRFIEGRY-VAFVDYSMATQAEIALEGLQGFRVSHTHALQISLAK 206
>gi|443921864|gb|ELU41399.1| NLI interacting factor-like phosphatase [Rhizoctonia solani AG-1
IA]
Length = 894
Score = 128 bits (322), Expect = 1e-27, Method: Composition-based stats.
Identities = 83/217 (38%), Positives = 122/217 (56%), Gaps = 12/217 (5%)
Query: 8 PNQTIYIKNLNEKIKKE---ELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
PN+T+YIKNLN+++KK+ +LK LY LF+ YGRI DVVA+K PK+RGQA+VVF ++
Sbjct: 42 PNKTLYIKNLNDQVKKDGQSKLKSQLYALFTPYGRIVDVVAIKNPKMRGQAFVVFQDLAG 101
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAK-EDGSFVP-REKKKKQEEKAER-KRRAE 121
A+ A+R FYDK M+I+YAK++S + E+ + P E K K R K+ A
Sbjct: 102 ATAAMRAWDGELFYDKEMKIEYAKTRSHATRRIEEPGWDPLAEAKAKALGLGSRLKKEAR 161
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
+ +M SN + +T ++ L N+P ET+ L+ LF QYP
Sbjct: 162 QGDGEAMDMDDDQSSNPNPQQNSSVPSTYSAVTISSRLLCTNIPAETSQDTLQKLF-QYP 220
Query: 182 GFKEVRMIEAKPG---IAFVEFEDDVQSSMAMQALQG 215
GF+ ++ PG A V+FE Q+ +A + L G
Sbjct: 221 GFQS--LVLTPPGQAKSAQVQFEQPDQAKVAREGLHG 255
>gi|443896718|dbj|GAC74062.1| spliceosomal protein snRNP-U1A/U2B [Pseudozyma antarctica T-34]
Length = 581
Score = 128 bits (322), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 82/238 (34%), Positives = 119/238 (50%), Gaps = 28/238 (11%)
Query: 5 DIPP-----NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVF 59
++PP +T+YI+NLNEK+K E +K +L LFS Y + V + ++RGQA+V
Sbjct: 71 EVPPLPADAGKTLYIQNLNEKVKLETMKATLVNLFSNYANVLSVTSHTNVRMRGQAFVAL 130
Query: 60 SEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCV---------AKEDGSFVPREKKKKQ 110
V AA A R+ FP Y K M+I +AKSKSD V KE F ++++ +
Sbjct: 131 DSVEAADKARREAHLFPLYGKAMKISFAKSKSDAVVAQETAESGGKESDDFQKHKEQRLE 190
Query: 111 EEKA------------ERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNI 158
+K E+K RA+ A +A +++G A ++ E PN +
Sbjct: 191 HKKMARRGNVLRRRELEKKIRAKRAAAGEIAEPE--KASGAAAKRAQHDMPDEYLPPNKM 248
Query: 159 LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGF 216
LF+Q +P LE LF Y G+ +V+ I K IAFVEF D S A AL G+
Sbjct: 249 LFLQKIPDGVGKGELESLFSAYSGYVDVQTIPGKADIAFVEFSDIPSSVTARGALNGY 306
>gi|345802821|ref|XP_003434975.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Canis
lupus familiaris]
Length = 88
Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 57/85 (67%), Positives = 72/85 (84%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+ + D+VALKT K+R QA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYTLFSQFVHVVDIVALKTMKMREQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKS 89
++NA+RQ+Q FPFY KPMRIQYAK+
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKT 86
>gi|6730009|pdb|1DRZ|A Chain A, U1a Spliceosomal ProteinHEPATITIS DELTA VIRUS GENOMIC
Ribozyme Complex
Length = 97
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 74/89 (83%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SL+ +FS++G+I D++ ++ K RGQA+V+F EV++A+N
Sbjct: 7 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKXRGQAFVIFKEVSSATN 66
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAK 96
A+R Q FPFYDKP RIQYAK+ SD +AK
Sbjct: 67 ALRSXQGFPFYDKPXRIQYAKTDSDIIAK 95
>gi|192988518|pdb|3CUL|A Chain A, Aminoacyl-Trna Synthetase Ribozyme
gi|192988519|pdb|3CUL|B Chain B, Aminoacyl-Trna Synthetase Ribozyme
gi|192988525|pdb|3CUN|A Chain A, Aminoacyl-Trna Synthetase Ribozyme
gi|192988526|pdb|3CUN|B Chain B, Aminoacyl-Trna Synthetase Ribozyme
gi|210061026|pdb|3EGZ|A Chain A, Crystal Structure Of An In Vitro Evolved Tetracycline
Aptamer And Artificial Riboswitch
Length = 98
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 74/89 (83%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SL+ +FS++G+I D++ ++ K RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKXRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAK 96
A+R Q FPFYDKP RIQYAK+ SD +AK
Sbjct: 68 ALRSXQGFPFYDKPXRIQYAKTDSDIIAK 96
>gi|6137598|pdb|1CX0|A Chain A, Hepatitis Delta Virus Ribozyme
Length = 95
Score = 127 bits (320), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 55/89 (61%), Positives = 74/89 (83%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SL+ +FS++G+I D++ ++ K RGQA+V+F EV++A+N
Sbjct: 5 PNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKXRGQAFVIFKEVSSATN 64
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAK 96
A+R Q FPFYDKP RIQYAK+ SD +AK
Sbjct: 65 ALRSXQGFPFYDKPXRIQYAKTDSDIIAK 93
>gi|299747568|ref|XP_001837125.2| U1 small nuclear ribonucleoprotein A [Coprinopsis cinerea
okayama7#130]
gi|298407578|gb|EAU84742.2| U1 small nuclear ribonucleoprotein A [Coprinopsis cinerea
okayama7#130]
Length = 218
Score = 127 bits (319), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 72/170 (42%), Positives = 104/170 (61%), Gaps = 19/170 (11%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN T+YI NLNEKI KEELK LY LF+ YGRI D+VA K PK+RGQA++VF+++ A+
Sbjct: 6 PNPTLYINNLNEKITKEELKTQLYALFTTYGRIIDIVASKGPKMRGQAFLVFADLAGATT 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS-DCVAKEDGSFVPRE-----------KKKKQEEKA- 114
A+R + FYDKPMRI YAK+KS +++ED +FVP K+ + E+K+
Sbjct: 66 AMRACEGMLFYDKPMRITYAKTKSYATLSREDPNFVPPNAANASSLIQNGKRTRDEDKSD 125
Query: 115 ERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164
ER+ + E++ +SS + +N Q+T A +IL+I +
Sbjct: 126 ERQAKREKSDESSDEEMEIEDDDEAP------SNAQQTNACMSILYISTI 169
>gi|361128202|gb|EHL00148.1| putative U1 small nuclear ribonucleoprotein [Glarea lozoyensis
74030]
Length = 273
Score = 127 bits (318), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 74/217 (34%), Positives = 121/217 (55%), Gaps = 17/217 (7%)
Query: 18 NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPF 77
+++IK E+LK SL LF++YG I D+VA K +GQA++VF V +A A+ ++Q F
Sbjct: 44 HQRIKVEQLKESLRELFAEYGTIIDIVAKTNLKAKGQAFIVFDSVDSAQKAIDEVQGFEL 103
Query: 78 YDKPMRIQYAKSKSDCVAKEDGS--FVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQ 135
+ K M + +AK++SD K G + K+++ EK ++K+ AE+A+ + GA
Sbjct: 104 FGKEMELAFAKTRSDATVKRQGGEEELESHKRRRLAEK-DKKKAAEQAESQKLLKRPGAA 162
Query: 136 S-------NGGTAASFRNANTQETAA-------PNNILFIQNLPHETTSSMLEMLFQQYP 181
+ A +++N A PN ILF+QNLP E + L +F+++
Sbjct: 163 APEAARPIKATRGAGLKSSNPSGGAVIPDEYLPPNKILFVQNLPDEYEVNALTSIFERFE 222
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
GFKEVR++ + GIAFVE+E +V + A + G +
Sbjct: 223 GFKEVRLVPGRTGIAFVEYESEVGAISAKENTAGMPL 259
>gi|346326132|gb|EGX95728.1| small nuclear ribonucleoprotein [Cordyceps militaris CM01]
Length = 267
Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 77/255 (30%), Positives = 130/255 (50%), Gaps = 32/255 (12%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
P + +Y++NL E++K E L +L +FS++G++ D+VA K +GQA+VVF +A
Sbjct: 15 PDTRNVYVQNLEERVKPEPLTSALRTIFSEFGQVVDIVAKTNLKAKGQAFVVFDTPASAQ 74
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPRE--------------------- 105
AV ++ FP +DKPMR+ A+S SD + GS E
Sbjct: 75 EAVDEINGFPLFDKPMRLAMARSYSDKTVEMSGSPAQLEAHKQHRLAEKGCEEEMLTAIL 134
Query: 106 --KKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAA-------PN 156
+KKK E AE R+ + + + G S G + ++ + + A PN
Sbjct: 135 VTEKKKAIEAAEGPRQGKRG-AAGVVGADGRPSKIGKPSGLKSTSVAQAAVIPDEYLPPN 193
Query: 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGF 216
ILF+QN+P E L LF ++ GF+EVR++ + GIAFVE++ + ++ A + G
Sbjct: 194 KILFLQNVPDEYDVEGLTALFGRFEGFREVRVVPGRRGIAFVEYDAEQGATEAKENTAGM 253
Query: 217 KITPQNPMAITFAKK 231
+ +N + +T+ ++
Sbjct: 254 TLGDRN-IKVTYQRQ 267
>gi|70997421|ref|XP_753458.1| U1 small nuclear ribonucleoprotein [Aspergillus fumigatus Af293]
gi|66851094|gb|EAL91420.1| U1 small nuclear ribonucleoprotein, putative [Aspergillus fumigatus
Af293]
gi|159126813|gb|EDP51929.1| U1 small nuclear ribonucleoprotein, putative [Aspergillus fumigatus
A1163]
Length = 255
Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 76/236 (32%), Positives = 132/236 (55%), Gaps = 21/236 (8%)
Query: 14 IKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQ 73
++NL E+IK ++LK +L +FS+YG I ++VA K +GQA++VF V +A+ A+ ++
Sbjct: 23 VRNLEERIKVDQLKVALEEIFSEYGNIVEIVAKTNLKAKGQAFIVFDNVESATRAIEEVN 82
Query: 74 NFPFYDKPMRIQYAKSKSDC-VAKEDGS----------FVPREKKKKQEE-KAERKRR-- 119
F +DKPM + YAK+KSD V +E G+ +E+K+ E +A++K +
Sbjct: 83 GFELFDKPMVLDYAKTKSDATVLREGGTEELEVHKRRRLAEKERKQAHEALEAQKKLKRP 142
Query: 120 ---AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
A+ A+ + G G + G AA+ E PN ILF+++LP L +
Sbjct: 143 PGPADTARPAKTVKGAGLKPTSGAAAAV---IPDEYLPPNKILFLRDLPDTADQESLTAI 199
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITFAKK 231
F ++ GF+EVR++ + GIAFVE+E++ + A +A + P+ +T+ ++
Sbjct: 200 FGRFEGFQEVRLVPGRKGIAFVEYENESGAISAKEATANMPMGDNGKPIRVTYQRQ 255
>gi|320591314|gb|EFX03753.1| U1 small nuclear ribonucleoprotein [Grosmannia clavigera kw1407]
Length = 236
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 74/227 (32%), Positives = 127/227 (55%), Gaps = 9/227 (3%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
++Y NL E++K E L+ +L +F+++G + D+VA + K +GQA++V+ + AA AVR
Sbjct: 13 SVYAHNLEERVKPEVLREALQTVFAEFGTVIDIVAKQNLKAKGQAFIVYDDPDAAQTAVR 72
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA--QQSSM 128
+ Q FP +DKPM + A+++SD + G E K++ K++A EA +Q +
Sbjct: 73 EAQGFPLFDKPMVLALARTRSDATVRRSGDEDELEAHKRRRIAERDKKKALEAAEEQKRL 132
Query: 129 ANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM 188
T A GG AA E PN LF+QNLP + + +L +F +Y GF+EVR+
Sbjct: 133 LQRTAAGGAGGAAAVAPAVVPDEYLPPNKTLFVQNLPEDCDADVLTGIFGRYEGFREVRL 192
Query: 189 IEAKPG--IAFVEFEDDVQSSMAMQALQGFKI--TPQNPMAITFAKK 231
+ PG +AFVE++ + + A + G + + P+ +T+ ++
Sbjct: 193 V---PGRRLAFVEYDAEPGAITAKENTAGMLVGEADKRPIKVTYQRQ 236
>gi|169601282|ref|XP_001794063.1| hypothetical protein SNOG_03502 [Phaeosphaeria nodorum SN15]
gi|111067587|gb|EAT88707.1| hypothetical protein SNOG_03502 [Phaeosphaeria nodorum SN15]
Length = 177
Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 76/94 (80%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+T+Y++NLN+K+ KE+LKRSLY LF+ YG + DVVALKT K+RGQA VVF ++ A++
Sbjct: 20 PNRTLYVRNLNDKLPKEDLKRSLYMLFATYGVVLDVVALKTAKMRGQAHVVFRDLDASTQ 79
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+R +Q F F+ K M+I YAK+KSD +AK DG++
Sbjct: 80 AMRALQGFTFFGKDMQIAYAKTKSDTIAKLDGTY 113
Score = 41.2 bits (95), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 30/82 (36%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 155 PNNILFIQNL----PHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQSSM 208
PN L+++NL P E L MLF Y +V ++ G A V F D S+
Sbjct: 20 PNRTLYVRNLNDKLPKEDLKRSLYMLFATYGVVLDVVALKTAKMRGQAHVVFRDLDASTQ 79
Query: 209 AMQALQGFKITPQNPMAITFAK 230
AM+ALQGF ++ M I +AK
Sbjct: 80 AMRALQGFTFFGKD-MQIAYAK 100
>gi|342885057|gb|EGU85166.1| hypothetical protein FOXB_04281 [Fusarium oxysporum Fo5176]
Length = 243
Score = 126 bits (316), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 69/239 (28%), Positives = 136/239 (56%), Gaps = 16/239 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y++NL E++K + L +L +F+++G + D+VA K + +GQA+VV+ +A +
Sbjct: 6 PISTVYVQNLEERVKLDALVDTLRTVFAEFGNVVDIVAKKNLRAKGQAFVVYDNPESAQD 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA-EEAQQS 126
A+ ++ F + KPM++ +A+++SD + G+ E+ K+ + + KR+A E A++
Sbjct: 66 AINEIDGFELFGKPMKLAFARTQSDKTIELKGNQEELEQHKRHRQAEKDKRKALESAEEQ 125
Query: 127 SMAN--GTGAQSNGGTAASFRNANTQETAA------------PNNILFIQNLPHETTSSM 172
N G+G+ ++ A + +++ + T+A PN ILF+QN P
Sbjct: 126 RQINKRGSGSVNDNRPAKAAKSSGLKSTSAAASGSVLDEFLPPNKILFVQNFPEGYDIET 185
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
L +F ++ GF+EVR++ + GIAFVE+E + + A + G + + P+ +T+ ++
Sbjct: 186 LTSVFGRFDGFREVRLVPGRRGIAFVEYEAEQGAITAKENTAGLHLGDK-PIKVTYQRQ 243
>gi|145543087|ref|XP_001457230.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124425045|emb|CAK89833.1| unnamed protein product [Paramecium tetraurelia]
Length = 221
Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 75/233 (32%), Positives = 123/233 (52%), Gaps = 26/233 (11%)
Query: 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61
I D P +T+Y+ LN+KIK E+LK LY LFSQ+G + +V KT KLRGQA++VF
Sbjct: 12 INQDSAPKETLYVSGLNDKIKLEDLKFVLYILFSQFGEVLQIVMKKTQKLRGQAFIVFQN 71
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAE 121
+T A+NA + YDKP+ I++A KS + +G F ++K++K+ + A+
Sbjct: 72 ITYATNAKSALSGMMVYDKPLIIEFAYKKSVIFDRMEGKFYYKQKQQKELQPTLPTDLAK 131
Query: 122 EAQQSSM---ANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQ 178
E +Q + N + G + + +NIL I
Sbjct: 132 ERKQKKLEDKLNNNTVFNQGENHYHHLSPKLCYRSYLDNILVIH---------------- 175
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+++I A+ G+AFVE+++D Q+++A++ L FKITP+ + + +AKK
Sbjct: 176 ------LIKVITAR-GLAFVEYQNDDQATVALKGLSNFKITPECQLKVKYAKK 221
>gi|340501297|gb|EGR28098.1| spliceosomal protein, putative [Ichthyophthirius multifiliis]
Length = 183
Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 66/181 (36%), Positives = 106/181 (58%), Gaps = 10/181 (5%)
Query: 36 QYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVA 95
Q+G I ++V K LRGQAW+VF ++TAA+NA + + F FY K ++I ++KS+S+ +
Sbjct: 2 QFGEILEIVIKKKNTLRGQAWIVFKDITAATNAKKMLHGFLFYGKDLKINFSKSRSEILD 61
Query: 96 KEDGSFVPREKKKKQ---EEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQET 152
K +G +VP++K K+ ++K E + + E QQ A E
Sbjct: 62 KLEGKWVPKKKLKRNSILDQKIENQAQKHENQQQQQQQQQQQLQQQIQQA------VTEL 115
Query: 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQA 212
PNN+L ++ LP +S +L LF QYPGFKEVR+I A+ + F+EFE++ Q+++A+
Sbjct: 116 NEPNNVLMVEYLPSFISSEILMSLFSQYPGFKEVRLISARR-VGFIEFENEDQATVALHG 174
Query: 213 L 213
Sbjct: 175 F 175
>gi|327276255|ref|XP_003222885.1| PREDICTED: u1 small nuclear ribonucleoprotein A-like [Anolis
carolinensis]
Length = 280
Score = 124 bits (312), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 59/116 (50%), Positives = 84/116 (72%), Gaps = 5/116 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ S+ L + G+I D++ + K+RGQA+V+F EV++++N
Sbjct: 8 PNHTIYINNLNEKIKKDGKFISVSMLLNPSGQILDILVSHSMKMRGQAFVIFKEVSSSTN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA 123
A+R MQ FPFYDKPMRIQYAK SD +AK G++V R++K+++ RK + +EA
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKMDSDIIAKMKGTYVERDRKREK-----RKPKGQEA 118
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 204 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 263
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 264 GFKITQNNAMKISFAKK 280
>gi|313236302|emb|CBY11622.1| unnamed protein product [Oikopleura dioica]
Length = 161
Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 70/185 (37%), Positives = 110/185 (59%), Gaps = 27/185 (14%)
Query: 47 KTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK 106
K PK+RGQA++ F +++ A+NA+++MQ FPFY+K M I Y++ +S + +
Sbjct: 4 KAPKMRGQAFITFKDISDAANAMKRMQGFPFYEKAMNIAYSRRESHVIT---------QA 54
Query: 107 KKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH 166
KK K ER ++A ++N AA + ++ +E AA ++++NLP
Sbjct: 55 KKYVPAKDER----------TLAK----ETNAKVAAKKKTSDEEEPAA---TIYVENLPD 97
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226
E SML +LF Q+PGFK+ R + + G AFVEF D ++ A ALQGFK+TP+ P+ +
Sbjct: 98 EANESMLNLLFSQFPGFKKSRPVPSG-GKAFVEFADAGAATSAKDALQGFKVTPERPIKL 156
Query: 227 TFAKK 231
TF+KK
Sbjct: 157 TFSKK 161
>gi|67482465|ref|XP_656582.1| U1snRNP-specific protein [Entamoeba histolytica HM-1:IMSS]
gi|56473795|gb|EAL51198.1| U1snRNP-specific protein, putative [Entamoeba histolytica
HM-1:IMSS]
Length = 232
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 117/207 (56%), Gaps = 7/207 (3%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IP + T+YI NL++ IK ++ SL +F YG + V K+ K+RGQA+V++ +A
Sbjct: 17 IPVSCTLYINNLDQSIKPNRIRDSLNTVFGAYGNVLQVCVRKSLKMRGQAFVIYDTKESA 76
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
A+ +QN +D+PM I Y+K +SD + K+ G + RE+K KQ K + ++ E +
Sbjct: 77 QFAMESLQNHELFDRPMHINYSKVESDIIVKKQGKEITRERKPKQ-IKVQIEKTLEHEES 135
Query: 126 SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE 185
+ +SN N+ T+ T NN LFI+++P + LE LF+Q GF E
Sbjct: 136 PINQDIEKKESNETKLPP--NSPTKYT---NNRLFIKSVPQNVSKQRLEELFKQQEGFVE 190
Query: 186 VRMIEAKP-GIAFVEFEDDVQSSMAMQ 211
VR I K +AF+EF+D++ S AMQ
Sbjct: 191 VRYIVIKGNAVAFIEFKDEISSEKAMQ 217
>gi|451856476|gb|EMD69767.1| hypothetical protein COCSADRAFT_155918 [Cochliobolus sativus
ND90Pr]
Length = 244
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 123/231 (53%), Gaps = 17/231 (7%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P +TIY+ NL E++K + +K++L +F YG I DV+A + K +GQA++VF AA
Sbjct: 23 PIETIYVNNLEERVKIDTMKQALTRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALE 82
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
AV +M F Y K MR+ AK+ SD K + + K+K+ + KR E+A+
Sbjct: 83 AVEEMNGFEMYGKVMRVHRAKTHSDETVKRKAPDMFEDHKRKRLTLKDFKRAEEDAK--- 139
Query: 128 MANGTGAQSNGGTAASFRNANT------QETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
AQ+N A R A T E PN LF+QN+P + L +F+++
Sbjct: 140 ------AQANPVAAEKPRAAKTGAAAVPDEYVRPNKTLFLQNIPRDVDEDDLTTIFERFE 193
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITFAKK 231
GFKEVR++ + +AF EFE++ + A +A I + PM +T+ ++
Sbjct: 194 GFKEVRLVSVR-AVAFAEFENEQFAITAKEATANTPIGAEGKPMKVTYQRQ 243
>gi|189205583|ref|XP_001939126.1| U2 small nuclear ribonucleoprotein B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975219|gb|EDU41845.1| U2 small nuclear ribonucleoprotein B [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 182
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 85/108 (78%), Gaps = 1/108 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+T+Y++NL +K++KE+LKR+LY LF+ YG I D+VALKT K+RGQA VVF +V +++
Sbjct: 20 PNRTLYVRNLPDKLQKEDLKRNLYMLFATYGVILDIVALKTMKMRGQAHVVFRDVDSSTQ 79
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF-VPREKKKKQEEKA 114
A+R +Q F F+ K M+I YAK+KSD +AK DG++ +P +++ Q E+A
Sbjct: 80 AMRALQAFTFFGKDMQITYAKTKSDTIAKLDGTYKMPEPEREDQPEQA 127
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 7/82 (8%)
Query: 155 PNNILFIQNLPH----ETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQSSM 208
PN L+++NLP E L MLF Y ++ ++ G A V F D S+
Sbjct: 20 PNRTLYVRNLPDKLQKEDLKRNLYMLFATYGVILDIVALKTMKMRGQAHVVFRDVDSSTQ 79
Query: 209 AMQALQGFKITPQNPMAITFAK 230
AM+ALQ F ++ M IT+AK
Sbjct: 80 AMRALQAFTFFGKD-MQITYAK 100
>gi|85000071|ref|XP_954754.1| U1 snRNP protein [Theileria annulata strain Ankara]
gi|65302900|emb|CAI75278.1| U1 snRNP protein, putative [Theileria annulata]
Length = 346
Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 82/259 (31%), Positives = 132/259 (50%), Gaps = 53/259 (20%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPNQT+YIKN+N++IK + LKR L LF +YG+I +VA+K+ RGQAW+VF V ++
Sbjct: 46 IPPNQTLYIKNINDRIKIDVLKRDLMELFGKYGKILQIVAMKSFWRRGQAWIVFDNVESS 105
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEK-AERKRRAEEAQ 124
+ A+ ++Q F Y ++I YA KSD V+ +G+FV R K K+ +K +R+ ++
Sbjct: 106 TQAMNELQGFKIYGHTLQINYALEKSDIVSIPEGTFVQRPKGPKKPKKILQREMMLKQLY 165
Query: 125 QSSMANGTGAQ--------------SNGGTAASFRNAN--TQETAA-----------PNN 157
S+ +N Q S G + A N N T E P+N
Sbjct: 166 NSNPSNPLLTQNPVNPAHNLMGNPESFGFSDAPVNNLNMGTMELQGQVVNNLNLPYQPHN 225
Query: 158 I------------------------LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP 193
+ LF++NLP + + + LF PGF E ++I +K
Sbjct: 226 LTHPFPTHHSPGFSDDPSLMKRNRTLFVENLPDNISHNDVNNLFHNMPGFVETKLIASK- 284
Query: 194 GIAFVEFEDDVQSSMAMQA 212
+AF++F+++ S+ ++Q
Sbjct: 285 HVAFIDFDNEFNSNYSLQG 303
>gi|451998492|gb|EMD90956.1| hypothetical protein COCHEDRAFT_1137201 [Cochliobolus
heterostrophus C5]
Length = 178
Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 56/108 (51%), Positives = 84/108 (77%), Gaps = 1/108 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+T+Y++NL +K++K++LKRSLY LF+ YG I ++VALKT K+RGQA VVF +V A++
Sbjct: 18 PNRTLYVRNLPDKLQKDDLKRSLYMLFATYGVILEIVALKTMKMRGQAHVVFRDVDASTQ 77
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF-VPREKKKKQEEKA 114
A+R +Q F F+ K M+I YAK+KSD VAK DG++ +P ++ E++A
Sbjct: 78 AMRALQGFTFFGKDMQIAYAKTKSDTVAKLDGTYKMPEPERADDEQQA 125
Score = 40.0 bits (92), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 155 PNNILFIQNLPHETTSSMLE----MLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQSSM 208
PN L+++NLP + L+ MLF Y E+ ++ G A V F D S+
Sbjct: 18 PNRTLYVRNLPDKLQKDDLKRSLYMLFATYGVILEIVALKTMKMRGQAHVVFRDVDASTQ 77
Query: 209 AMQALQGFKITPQNPMAITFAK 230
AM+ALQGF ++ M I +AK
Sbjct: 78 AMRALQGFTFFGKD-MQIAYAK 98
>gi|407040284|gb|EKE40055.1| U1snRNP-specific protein, putative [Entamoeba nuttalli P19]
Length = 232
Score = 123 bits (308), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 75/207 (36%), Positives = 117/207 (56%), Gaps = 7/207 (3%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IP + T+YI NL++ IK ++ SL +F YG + V K+ K+RGQA+V++ +A
Sbjct: 17 IPVSCTLYINNLDQSIKPNRIRDSLNTVFGAYGNVLQVCVRKSLKMRGQAFVIYDTKESA 76
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
A+ +QN +D+PM I Y+K +SD + K G + RE+K KQ + + + E ++
Sbjct: 77 QFAMESLQNHELFDRPMHINYSKVESDIIVKNQGKEITRERKPKQIKV--QIEKTLEHEE 134
Query: 126 SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE 185
S + T + + T N+ T+ T NN LFI+++P + LE LF+Q GF E
Sbjct: 135 SPINQDTEKKESNETKLP-PNSPTKYT---NNRLFIKSVPQSVSKQRLEELFKQQEGFVE 190
Query: 186 VRMIEAK-PGIAFVEFEDDVQSSMAMQ 211
VR I K +AF+EF+D+ S AMQ
Sbjct: 191 VRYIVIKGNAVAFIEFKDETSSEKAMQ 217
>gi|451848678|gb|EMD61983.1| hypothetical protein COCSADRAFT_192065 [Cochliobolus sativus
ND90Pr]
Length = 178
Score = 123 bits (308), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 61/128 (47%), Positives = 89/128 (69%), Gaps = 12/128 (9%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+T+Y++NL +K++K++LKRSLY LF+ YG I D+VALKT K+RGQA VVF ++ +++
Sbjct: 18 PNRTLYVRNLPDKLQKDDLKRSLYMLFATYGVILDIVALKTMKMRGQAHVVFRDIDSSTQ 77
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS- 126
A+R +Q F F+ K M+I YAK+KSD VAK DG++ K RAE+ QQ+
Sbjct: 78 AMRALQGFTFFGKDMQIAYAKTKSDTVAKLDGTY-----------KMPEPERAEDDQQAP 126
Query: 127 SMANGTGA 134
+ +G GA
Sbjct: 127 AQTSGFGA 134
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 42/82 (51%), Gaps = 7/82 (8%)
Query: 155 PNNILFIQNLPHETTSSMLE----MLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQSSM 208
PN L+++NLP + L+ MLF Y ++ ++ G A V F D S+
Sbjct: 18 PNRTLYVRNLPDKLQKDDLKRSLYMLFATYGVILDIVALKTMKMRGQAHVVFRDIDSSTQ 77
Query: 209 AMQALQGFKITPQNPMAITFAK 230
AM+ALQGF ++ M I +AK
Sbjct: 78 AMRALQGFTFFGKD-MQIAYAK 98
>gi|452003034|gb|EMD95491.1| hypothetical protein COCHEDRAFT_1200551 [Cochliobolus
heterostrophus C5]
Length = 244
Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 78/231 (33%), Positives = 122/231 (52%), Gaps = 17/231 (7%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P +TIY+ NL E++K + +K++L +F YG I DV+A + K +GQA++VF AA
Sbjct: 23 PIETIYVNNLEERVKIDTMKQALIRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALE 82
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
AV M F Y K MR+ AK+ SD K + + K+K+ + KR E+A+
Sbjct: 83 AVEDMNGFEMYGKVMRVHRAKTHSDETVKRKAPDMFEDHKRKRLTLKDFKRAEEDAK--- 139
Query: 128 MANGTGAQSNGGTAASFRNANT------QETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
AQ+N A R A T E PN LF+QN+P + L +F+++
Sbjct: 140 ------AQANPVAAEKPRAAKTGAAAVPDEYVRPNKTLFLQNIPRDVDEDDLTSIFERFE 193
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITFAKK 231
GFKEVR++ + +AF EFE++ + A +A I + PM +T+ ++
Sbjct: 194 GFKEVRLVSVR-AVAFAEFENEQFAITAKEATANTPIGAEGKPMKVTYQRQ 243
>gi|327354834|gb|EGE83691.1| U2 small nuclear ribonucleoprotein B [Ajellomyces dermatitidis ATCC
18188]
Length = 313
Score = 122 bits (307), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 83/267 (31%), Positives = 131/267 (49%), Gaps = 50/267 (18%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQ 71
+ ++NL E+IK E LK +L +FS+YG I D+VA K +GQA++VF V +A+ A+ +
Sbjct: 50 VQVRNLEERIKVEPLKEALAEIFSEYGNIIDIVAKTNLKAKGQAFIVFDNVDSATRAIEE 109
Query: 72 MQNFPFYDKPMRIQYAKSKSDC-VAKEDG-SFVPREKKKKQEEKA--------------- 114
+ F ++KPM + YA+++SD V KE G + + K+K+ EK
Sbjct: 110 INGFELFEKPMVLDYARTRSDAIVLKEHGETELEAHKRKRLAEKGQFIFSFSFRLVVSKA 169
Query: 115 -----------ERKRRAE------------------EAQQSSMANGTGAQSNGGTAASFR 145
ERK+ E EA+ S + G G + + TAA
Sbjct: 170 LMADFHFFGATERKQAQEALEAQKKLKRGVAAPGGPEARPSKVTRGAGLKPSTATAAPVI 229
Query: 146 NANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQ 205
E PN ILF++ +P L +F ++ GFKEVRM+ + GIAFVE+E +
Sbjct: 230 Q---DEYLPPNKILFLREIPDSLDQDGLTEIFGRFEGFKEVRMVPGRKGIAFVEYEAETG 286
Query: 206 SSMAMQALQGFKITPQN-PMAITFAKK 231
+ A +A G + P+ +TF ++
Sbjct: 287 AISAKEATSGMPLGENGKPIRVTFQRQ 313
>gi|242002414|ref|XP_002435850.1| U1 small nuclear ribonucleoprotein A, putative [Ixodes
scapularis]
gi|215499186|gb|EEC08680.1| U1 small nuclear ribonucleoprotein A, putative [Ixodes
scapularis]
Length = 96
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 54/78 (69%), Positives = 68/78 (87%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI NLNEK+KK+ELK+SLY +FSQ+G+I D+VALKT K+RGQA+VVF ++ +
Sbjct: 3 DIRPNHTIYINNLNEKVKKDELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVVFKDLNS 62
Query: 65 ASNAVRQMQNFPFYDKPM 82
A+NA+R MQ FPFYDKPM
Sbjct: 63 ATNALRSMQGFPFYDKPM 80
>gi|259016065|gb|ACV89314.1| sans fille [Muscidifurax raptorellus]
Length = 109
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 63/149 (42%), Positives = 82/149 (55%), Gaps = 42/149 (28%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V+F E+ +A+NA+R MQ FPFYDKPMRI Y+K+ SD +AK G+F R KK K
Sbjct: 3 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPK 62
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
++ PN ILF+ NLP ET+
Sbjct: 63 EQ------------------------------------------PPNQILFLTNLPDETS 80
Query: 170 SSMLEMLFQQYPGFKEVRMIEAKPGIAFV 198
ML MLF Q+PGFKEVR++ + IAFV
Sbjct: 81 EMMLSMLFNQFPGFKEVRLVPNRHDIAFV 109
>gi|417409102|gb|JAA51075.1| Putative spliceosomal protein snrnp-u1a/u2b, partial [Desmodus
rotundus]
Length = 258
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 56/107 (52%), Positives = 83/107 (77%), Gaps = 1/107 (0%)
Query: 25 ELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84
ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+NA+R MQ FPFYDKPMRI
Sbjct: 1 ELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRI 60
Query: 85 QYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQSSMAN 130
QYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q A
Sbjct: 61 QYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQGGAAT 107
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 182 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 241
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 242 GFKITQNNAMKISFAKK 258
>gi|330933232|ref|XP_003304096.1| hypothetical protein PTT_16533 [Pyrenophora teres f. teres 0-1]
gi|311319509|gb|EFQ87793.1| hypothetical protein PTT_16533 [Pyrenophora teres f. teres 0-1]
Length = 244
Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 123/231 (53%), Gaps = 17/231 (7%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P +TIY+ NL E++K + +K++L +F YG I DV+A + K +GQA++VF AA
Sbjct: 23 PIETIYVNNLEERVKIDTMKQALTRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALE 82
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
AV +M F Y K M++ AK+ SD K + + K+K+ + KR E+A+
Sbjct: 83 AVEEMNGFEMYGKVMKVHRAKTHSDETVKRKAPDMFEDHKRKRLTLKDFKRAEEDAK--- 139
Query: 128 MANGTGAQSNGGTAASFRNANT------QETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
AQ+N A R A T E PN LF+QN+P + L +F+++
Sbjct: 140 ------AQANPVAAEKPRAAKTGAAAIPDEYVRPNKTLFLQNIPRDVDEDTLTTIFERFE 193
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITFAKK 231
GFKEVR++ + +AF EFE++ + A +A I + PM +T+ ++
Sbjct: 194 GFKEVRLVSVR-AVAFAEFENEQFAITAKEATANNPIGAEGKPMKVTYQRQ 243
>gi|189205961|ref|XP_001939315.1| U2 small nuclear ribonucleoprotein B [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187975408|gb|EDU42034.1| U2 small nuclear ribonucleoprotein B [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 244
Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 77/231 (33%), Positives = 123/231 (53%), Gaps = 17/231 (7%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P +TIY+ NL E++K + +K++L +F YG I DV+A + K +GQA++VF AA
Sbjct: 23 PIETIYVNNLEERVKIDTMKQALTRVFQYYGPILDVIAKSSLKRKGQAFIVFDSEKAALE 82
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
AV +M F Y K M++ AK+ SD K + + K+K+ + KR E+A+
Sbjct: 83 AVEEMNGFEMYGKVMKVHRAKTHSDETVKRKAPDMFEDHKRKRLTLKDFKRAEEDAK--- 139
Query: 128 MANGTGAQSNGGTAASFRNANT------QETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
AQ+N A R A T E PN LF+QN+P + L +F+++
Sbjct: 140 ------AQANPIAAEKPRAAKTGAAAIPDEYVRPNKTLFLQNIPRDVDEDTLTAIFERFE 193
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITFAKK 231
GFKEVR++ + +AF EFE++ + A +A I + PM +T+ ++
Sbjct: 194 GFKEVRLVSVR-AVAFAEFENEQFAITAKEATANNPIGAEGKPMKVTYQRQ 243
>gi|449709804|gb|EMD49000.1| U1snRNP, putative [Entamoeba histolytica KU27]
Length = 232
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 74/207 (35%), Positives = 117/207 (56%), Gaps = 7/207 (3%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IP + T+YI NL++ IK ++ SL +F YG + V K+ K+RGQA+V++ +A
Sbjct: 17 IPVSCTLYINNLDQSIKPNRIRDSLNTVFGAYGNVLQVCVRKSLKMRGQAFVIYDTKESA 76
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
A+ +QN +D+PM I Y+K +SD + K+ G + RE+K KQ K + ++ E +
Sbjct: 77 QFAMESLQNHELFDRPMHINYSKVESDIIVKKQGKEITRERKPKQ-IKVQIEKTLEHEES 135
Query: 126 SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE 185
+ +SN N+ T+ T NN LFI+++P + LE LF+Q GF E
Sbjct: 136 PINQDIEKKESNETKLPP--NSPTKYT---NNRLFIKSVPQNVSKQRLEELFKQQEGFVE 190
Query: 186 VRMIEAKP-GIAFVEFEDDVQSSMAMQ 211
VR I K +AF+EF+D++ S A+Q
Sbjct: 191 VRYIVIKGNAVAFIEFKDEISSEKAIQ 217
>gi|148706068|gb|EDL38015.1| mCG22457 [Mus musculus]
Length = 275
Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/122 (50%), Positives = 88/122 (72%), Gaps = 8/122 (6%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV
Sbjct: 12 NDTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSMKMRGQAFVIFKEV------ 65
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQSS 127
++ MQ FPFY KPM IQYAK+ SD +AK G+F R++K+ K++ K++ A++A Q
Sbjct: 66 MKPMQGFPFY-KPMHIQYAKTDSDIIAKMKGTFEERDRKREKRKPKSQETPAAKKAVQGG 124
Query: 128 MA 129
A
Sbjct: 125 AA 126
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 56/77 (72%), Gaps = 2/77 (2%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ IAFVEF+++VQ+ A ALQ
Sbjct: 201 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVRHD--IAFVEFDNEVQAGAARDALQ 258
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+ AKK
Sbjct: 259 GFKITQNNAMKISLAKK 275
>gi|396458052|ref|XP_003833639.1| similar to RNA binding domain-containing protein [Leptosphaeria
maculans JN3]
gi|312210187|emb|CBX90274.1| similar to RNA binding domain-containing protein [Leptosphaeria
maculans JN3]
Length = 182
Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 54/105 (51%), Positives = 80/105 (76%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+T+Y++NL +K+ KE+LKR+LY LF+ YG + D+VALKT K+RGQA VVF +V +++
Sbjct: 21 PNRTLYVRNLPDKLGKEDLKRNLYMLFATYGVVIDIVALKTMKMRGQAHVVFRDVDSSTQ 80
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A+R +Q F F+ K M+I YAK+KSD ++K DG++ E +K EE
Sbjct: 81 AMRALQGFTFFGKEMQIAYAKTKSDAISKLDGTYKLPEPEKTGEE 125
Score = 40.0 bits (92), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 41/84 (48%), Gaps = 7/84 (8%)
Query: 153 AAPNNILFIQNLPH----ETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQS 206
A PN L+++NLP E L MLF Y ++ ++ G A V F D S
Sbjct: 19 AVPNRTLYVRNLPDKLGKEDLKRNLYMLFATYGVVIDIVALKTMKMRGQAHVVFRDVDSS 78
Query: 207 SMAMQALQGFKITPQNPMAITFAK 230
+ AM+ALQGF + M I +AK
Sbjct: 79 TQAMRALQGFTFFGKE-MQIAYAK 101
>gi|255726088|ref|XP_002547970.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133894|gb|EER33449.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 217
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 128/229 (55%), Gaps = 16/229 (6%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
I P +TIY+ NLNEK+ +LK+ L F+ YG+I + A KT KL+GQA++ F + +A
Sbjct: 2 IEPKKTIYVNNLNEKVSINKLKKELNKTFTPYGKILQITAFKTLKLKGQAFITFDNIESA 61
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
N++ ++ N ++KP++I +A S SD V ++ + RE+K+ + K +KR+ E+
Sbjct: 62 INSL-ELNNIEIFNKPIKITFANSNSDIVESDE---IIRERKQNKSLKTSKKRKLEDN-- 115
Query: 126 SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE 185
N ++ T N + N+IL +QN+ LE F + GF+
Sbjct: 116 ---GNKDNSKLKTKTKKKLDMLNEWKELPSNHILLLQNI---NKFDELEEFFNDFNGFEN 169
Query: 186 VRMIEAKPGIAFVEFEDDVQSSMAMQAL---QGFKITPQNPMAITFAKK 231
+R+++ K +AF+EFE++ ++ +Q + Q + P++ + ++FAKK
Sbjct: 170 IRVVKVK-NLAFIEFENEEMATNCLQQVKDDQLIQFGPEDEVLLSFAKK 217
>gi|345567447|gb|EGX50379.1| hypothetical protein AOL_s00076g143 [Arthrobotrys oligospora ATCC
24927]
Length = 195
Score = 120 bits (300), Expect = 6e-25, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 70/94 (74%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+YI NLN+KI K +LK +LY LFS YG + DV+ALKT K+RGQA V F ++ AS+
Sbjct: 24 PNQTLYISNLNDKIHKPDLKIALYTLFSTYGVVLDVIALKTAKMRGQAHVAFRDIAGASS 83
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+R Q + K M+IQYA+SKSD +AK DG++
Sbjct: 84 AMRGCQGMVIFGKEMKIQYARSKSDTIAKLDGTY 117
>gi|358366650|dbj|GAA83270.1| small nuclear ribonucleoprotein U)1a,U)2b [Aspergillus kawachii IFO
4308]
Length = 1418
Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats.
Identities = 80/265 (30%), Positives = 131/265 (49%), Gaps = 50/265 (18%)
Query: 14 IKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQ 73
++NL E+IK ++LK +L +FS+YG + ++VA K +GQA+VVF V AA+ A+ ++
Sbjct: 1157 VRNLEERIKVDQLKEALEEIFSEYGTVLEIVAKTNLKAKGQAFVVFDTVEAATRAIDEIN 1216
Query: 74 NFPFYDKPMRIQYAKSKSDCVAKEDGSFVPRE--KKKKQEEKA----------------- 114
F +DKPM + YAK++SD +G E K+++ EK
Sbjct: 1217 GFELFDKPMVLDYAKTRSDMTVLREGGEDELEAHKRRRLAEKGMLGFPLLLAFLIVSFCW 1276
Query: 115 ----------ERKRRAE--EAQQ---------------SSMANGTGAQSNGGTAASFRNA 147
ERK+ E EAQ+ + A G G + G AA+
Sbjct: 1277 KWLMMVVSGVERKQAHEALEAQKKLKRPPGAPTEPGRPAKTAKGAGLKPTSGAAAA---V 1333
Query: 148 NTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSS 207
E PN ILF+++LP L +F ++ GF+EVR++ + GIAFVE+E++ +
Sbjct: 1334 IPDEYLPPNKILFLRDLPDTADQDSLTAVFGRFEGFQEVRLVPGRKGIAFVEYENESGAI 1393
Query: 208 MAMQALQGFKI-TPQNPMAITFAKK 231
A +A G + P+ +T+ ++
Sbjct: 1394 SAKEATSGMAMGEAGKPIRVTYQRQ 1418
>gi|145533136|ref|XP_001452318.1| hypothetical protein [Paramecium tetraurelia strain d4-2]
gi|124420006|emb|CAK84921.1| unnamed protein product [Paramecium tetraurelia]
Length = 275
Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust.
Identities = 74/220 (33%), Positives = 120/220 (54%), Gaps = 15/220 (6%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPN+T+YI LNEK+ EE++++LY LFSQ G++ D++ K +RGQA+++ + +A
Sbjct: 45 PPNKTLYINRLNEKVTAEEMRQTLYALFSQSGKVLDIIVKKNILMRGQAFILMEDEESAI 104
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS 126
A + N YDK M++ +AK KS ++K D +EK ++ E K+R ++ +Q
Sbjct: 105 QAQIKFHNTQLYDKVMKVNFAKEKSYYISKGDNE--EKEKLPMSDKIKEHKKRIQDKRQR 162
Query: 127 SMANGTGAQSNGGTAASFRNANTQETAAPNNI---LFIQNLPHETTSSMLEML------- 176
M N Q T + N T A + I L+ Q + T L ++
Sbjct: 163 EMFN-QKQQREAPTISMPLTVNQVYTGASSKIKVLLYNQFFDSKLTKQRLHLVDFVNLEQ 221
Query: 177 -FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG 215
F+ + GF+E R I+ K G+AFVEFED++Q++ + L G
Sbjct: 222 HFRNFFGFREFRGIKPK-GVAFVEFEDELQATHCLNELNG 260
>gi|221060785|ref|XP_002261962.1| U1 small nuclear ribonucleoprotein a [Plasmodium knowlesi strain H]
gi|193811112|emb|CAQ41840.1| U1 small nuclear ribonucleoprotein a, putative [Plasmodium knowlesi
strain H]
Length = 499
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 87/280 (31%), Positives = 144/280 (51%), Gaps = 63/280 (22%)
Query: 1 MITGD--IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVV 58
+IT D IPPN+T+Y+KNLN++IK +E+K+SL LF QYG I D+V +K+ +GQAWVV
Sbjct: 209 VITADPSIPPNETLYVKNLNDRIKIDEMKKSLKDLFKQYGVIEDLVVMKSFWRKGQAWVV 268
Query: 59 FSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPR-----------EKK 107
+ V +++ A+ +Q F + K M+I Y+ +KSD +K DG+FV R E++
Sbjct: 269 YDTVESSTKALNALQGFVLFGKIMQINYSHNKSDVHSKRDGTFVERSKEPKKPKQILERE 328
Query: 108 KKQEE-----------------------KAERKRRAEEAQQSSMANGTGAQS------NG 138
+KQ+E + E++++ + +Q + AQ+ N
Sbjct: 329 RKQKEIFEMMQRNFIEMQMNNFRIMQNNELEKRKKIDLSQMDTQDLIAKAQAKAYEEKNK 388
Query: 139 GTAASF-RNANTQ----------ETAAP--NNI------LFIQNLPHETTSSMLEMLFQQ 179
F +N NT AP NNI LF++N+ + LF++
Sbjct: 389 KKNEDFTKNNNTMYQQPSPYYPMNAFAPMQNNIVVACKILFVENVVENVNTEEFNDLFKK 448
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQA-LQGFKI 218
+ GF E R+I + +AFV++ D+ ++ AM+ QG ++
Sbjct: 449 FSGFIEARIIPQR-NVAFVDYSDEAAATNAMKGKAQGRRV 487
>gi|367052635|ref|XP_003656696.1| hypothetical protein THITE_2121694 [Thielavia terrestris NRRL 8126]
gi|347003961|gb|AEO70360.1| hypothetical protein THITE_2121694 [Thielavia terrestris NRRL 8126]
Length = 203
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
+PPNQT+Y+ NL + KI+KE+L+ +LY LFS YG + DVVALKT K+RGQA +V+ ++
Sbjct: 18 VPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSVLDVVALKTMKMRGQAHIVYKDIQT 77
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+ A+R + F F +PM+I YAKSKS+ +AK DG+F
Sbjct: 78 ATQAMRSLDGFEFLGRPMKISYAKSKSNIIAKLDGTF 114
>gi|340923892|gb|EGS18795.1| U2 small nuclear ribonucleoprotein B'-like protein [Chaetomium
thermophilum var. thermophilum DSM 1495]
Length = 201
Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 55/107 (51%), Positives = 76/107 (71%), Gaps = 1/107 (0%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
IPPNQT+Y+ NL + KI+KE+L+ +LY LFS YG + DVVALKT K+RGQA +V+ ++
Sbjct: 18 IPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSVLDVVALKTMKMRGQAHIVYKDIQT 77
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQE 111
A+ A+R + F F +PM+I YAK KS +AK DG+F P K+ E
Sbjct: 78 ATMAMRALDGFEFLGRPMKISYAKGKSHIIAKLDGTFKPPTAAKEVE 124
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 8/83 (9%)
Query: 155 PNNILFIQNLPH-----ETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQSS 207
PN L++ NLP E + L MLF Y +V ++ G A + ++D ++
Sbjct: 20 PNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSVLDVVALKTMKMRGQAHIVYKDIQTAT 79
Query: 208 MAMQALQGFKITPQNPMAITFAK 230
MAM+AL GF+ PM I++AK
Sbjct: 80 MAMRALDGFEFL-GRPMKISYAK 101
>gi|237829859|ref|XP_002364227.1| small nuclear ribonucleoprotein U1A, putative [Toxoplasma gondii
ME49]
gi|211961891|gb|EEA97086.1| small nuclear ribonucleoprotein U1A, putative [Toxoplasma gondii
ME49]
gi|221487300|gb|EEE25532.1| small nuclear ribonucleoprotein U1A, putative [Toxoplasma gondii
GT1]
gi|221507093|gb|EEE32697.1| small nuclear ribonucleoprotein U1A, putative [Toxoplasma gondii
VEG]
Length = 385
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 73/96 (76%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPNQTIYI N+N+K+K ELK +L +F Q+G I +VA+ + RGQAW+VF+ V +A
Sbjct: 110 IPPNQTIYINNINDKVKLPELKENLRSMFKQFGEIRQIVAMSSFWRRGQAWIVFASVESA 169
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+ A++ MQ F ++D+P+RI Y+ +KSD +AKEDG+F
Sbjct: 170 TKAIQGMQGFVYHDQPLRINYSVTKSDIIAKEDGTF 205
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 36/121 (29%), Positives = 62/121 (51%), Gaps = 2/121 (1%)
Query: 111 EEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTS 170
E KR+AE A + G + A PN +LF++NLP + T
Sbjct: 267 ETMGVLKRKAEGALPTPQPAKLGGPFPPAAPVPPPAVDMNFPAMPNKVLFLENLPEDATM 326
Query: 171 SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
L LF ++ G EVR + + +AFVE+++++ ++ AM ALQG+ + + + IT+A+
Sbjct: 327 EGLVSLFSKHAGMIEVRPVLWR-RVAFVEYDNEMLAANAMNALQGYNMNGSS-IKITYAR 384
Query: 231 K 231
+
Sbjct: 385 R 385
>gi|345313966|ref|XP_001517530.2| PREDICTED: hypothetical protein LOC100087647 [Ornithorhynchus
anatinus]
Length = 403
Score = 117 bits (294), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 77/92 (83%)
Query: 21 IKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80
++++ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV +A+NA+R MQ FPFYDK
Sbjct: 184 LREDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVNSATNALRSMQGFPFYDK 243
Query: 81 PMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
PMRIQYAKS SD ++K G++V R++K+++ +
Sbjct: 244 PMRIQYAKSDSDIISKMKGTYVERDRKREKRK 275
>gi|296422964|ref|XP_002841027.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637257|emb|CAZ85218.1| unnamed protein product [Tuber melanosporum]
Length = 142
Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 51/96 (53%), Positives = 71/96 (73%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPNQT+Y++NLN+K++K++L+ LY LFS YG + DV ALKT K RGQA + F +V AA
Sbjct: 15 LPPNQTLYVQNLNDKVRKQDLRTELYTLFSTYGVVLDVNALKTMKGRGQAHIAFRDVAAA 74
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+ A+R +Q F F+ K MRI Y K KS V+K DG++
Sbjct: 75 TQAMRALQGFEFFGKEMRIFYGKGKSHAVSKLDGTY 110
>gi|320588577|gb|EFX01045.1| RNA-binding domain containing protein [Grosmannia clavigera kw1407]
Length = 200
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 53/99 (53%), Positives = 75/99 (75%), Gaps = 1/99 (1%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
I PNQT+Y++NL + KIKKE+L+ +LY LFS YG + DVVALKT K+RGQA +VF ++ A
Sbjct: 24 IAPNQTLYVRNLPSAKIKKEDLRMALYLLFSTYGPVLDVVALKTMKMRGQAHIVFRDIQA 83
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVP 103
A+ A R + F F+ + M++ YAKSKS+ +A+ DG+F P
Sbjct: 84 ATQAARSLDGFSFFGQDMKVTYAKSKSNVIARLDGTFEP 122
>gi|310793820|gb|EFQ29281.1| RNA recognition domain-containing protein [Glomerella graminicola
M1.001]
Length = 203
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
IPPNQT+Y+ NL + KI+K++L+ LY LFS YG + D+VA+KT K+RGQA + F +V
Sbjct: 23 IPPNQTLYVTNLPSNKIQKQDLRTELYLLFSTYGPVLDIVAMKTMKMRGQAHITFRDVQT 82
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+ A+R ++ F F +P+ IQYAKSKSD VAK DG++
Sbjct: 83 ATQAMRSLEGFEFLGRPLTIQYAKSKSDFVAKLDGTY 119
>gi|167380749|ref|XP_001735437.1| U1 small nuclear ribonucleoprotein A [Entamoeba dispar SAW760]
gi|165902588|gb|EDR28371.1| U1 small nuclear ribonucleoprotein A, putative [Entamoeba dispar
SAW760]
Length = 233
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 72/207 (34%), Positives = 113/207 (54%), Gaps = 6/207 (2%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IP + T+YI NL++ IK ++ SL +F YG + V K+ K+RGQA+V++ +A
Sbjct: 17 IPVSCTLYINNLDQSIKPNRIRDSLNTVFGAYGNVLQVCVRKSLKMRGQAFVIYDTKESA 76
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
A+ +QN +D+PM I Y+K +SD K G + REKK KQ K + ++ E ++
Sbjct: 77 QFAMESLQNHELFDRPMHINYSKIESDITVKNQGKEITREKKPKQ-IKVQIEKTLEHKEE 135
Query: 126 SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE 185
+ + N+ T+ T+ N LFI+++P + LE LF+Q GF E
Sbjct: 136 VPIKQDIEKKEPNEIKLP-PNSPTRHTS---NRLFIKSVPQNVSKQRLEELFKQQEGFVE 191
Query: 186 VRMIEAKP-GIAFVEFEDDVQSSMAMQ 211
VR I K +AF+EF+D+ S A+Q
Sbjct: 192 VRYIVIKGNAVAFIEFKDETSSEHAIQ 218
>gi|340520969|gb|EGR51204.1| predicted protein [Trichoderma reesei QM6a]
Length = 172
Score = 117 bits (293), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/97 (56%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
IPPNQTIYI NL + KI+K++L+ +LY LFS +G + D+VALKT ++RGQA +VF ++ A
Sbjct: 23 IPPNQTIYITNLPSAKIQKQDLRTALYMLFSTFGPVLDIVALKTMEMRGQAHIVFRDIQA 82
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+ A+R M F +PM+IQYAKSKS VAK DG+F
Sbjct: 83 ATQAMRTMDGQTFLGRPMKIQYAKSKSHFVAKLDGTF 119
>gi|353239405|emb|CCA71318.1| related to small nuclear ribonucleoprotein U2B` (U2 small nuclear
RNA-associated protein B`) [Piriformospora indica DSM
11827]
Length = 146
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 64/125 (51%), Positives = 82/125 (65%), Gaps = 12/125 (9%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN T+YIKNLN++I K+EL+ LY LF +G I DVVALKT K+RGQA+VVF ++ AA+
Sbjct: 4 PNPTLYIKNLNDRINKDELRAQLYALFLPHGPILDVVALKTAKMRGQAFVVFQDMIAATA 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAK-EDGSFV-----------PREKKKKQEEKAE 115
A+R Q FYDKPM I+YAKSKS K ED +FV PR +K+ +E+ E
Sbjct: 64 ALRAWQGEMFYDKPMHIEYAKSKSWATLKAEDPNFVPGIGRTNLPAPPRGEKRPREDGTE 123
Query: 116 RKRRA 120
R A
Sbjct: 124 GDRAA 128
>gi|260940453|ref|XP_002614526.1| hypothetical protein CLUG_05304 [Clavispora lusitaniae ATCC 42720]
gi|238851712|gb|EEQ41176.1| hypothetical protein CLUG_05304 [Clavispora lusitaniae ATCC 42720]
Length = 230
Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 67/222 (30%), Positives = 132/222 (59%), Gaps = 10/222 (4%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+Y+ NLNEK+ +LK L LF +YG++ + A + K++GQA+V +++ ++ A+R
Sbjct: 18 TLYVNNLNEKVSLNKLKAVLNSLFGRYGKVIQITAHRNLKMKGQAFVTYADPKSSDKALR 77
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMAN 130
++Q P + KP+RI +AK+ SD + +F K+++ +++ ER R+ +E Q+
Sbjct: 78 KLQGRPVFKKPIRITWAKASSDEYNRLLQNFDAIAKRQELKKERERLRKEKEQQKPQTPQ 137
Query: 131 GTGAQSNGGTAASFRNANTQETAAPNNILFIQNLP-HETTSSMLEMLFQQYPGFKEVRMI 189
+Q + ++ + PNNIL +QNL H+ ++ +L+ +F + GF+ VR+I
Sbjct: 138 PGTSQMSKSQIKQWK------SLPPNNILLLQNLADHQLSNEVLDAIFSVFNGFERVRLI 191
Query: 190 EAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+ + +AFV+F+ + ++ ++ L G + +N + +T+AKK
Sbjct: 192 KFR-KLAFVDFDSETNATACLEKL-GSSDSLENAL-LTYAKK 230
>gi|402079726|gb|EJT74991.1| small nuclear ribonucleoprotein [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 198
Score = 117 bits (292), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 67/226 (29%), Positives = 116/226 (51%), Gaps = 33/226 (14%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PP T+Y++NL E++K E LK L +FS YG I D+VA + +GQA+VVF + +A
Sbjct: 5 PPISTVYVRNLEERVKPEALKEVLATIFSDYGTIVDIVAKTNLRAKGQAFVVFDDPDSAQ 64
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS 126
AV ++Q F +D+PM + A+++SD + GS E K++ K++A EA +
Sbjct: 65 RAVDEVQGFELFDRPMHLAIARTRSDATVRAAGSGEEFEAHKRRRVAEMDKKKALEAATA 124
Query: 127 SMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEV 186
+ N A + GG A+ +F ++PGF+EV
Sbjct: 125 AQ-NKQAAGARGGKPAA-------------------------------GVFGRFPGFREV 152
Query: 187 RMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITFAKK 231
R++ + G+AFVE+E + + A ++ G + + P+ +T+ ++
Sbjct: 153 RLVPGRRGLAFVEYETEAGAIAAKESTAGMALGDEGKPVKVTYQRQ 198
>gi|407921847|gb|EKG14985.1| protein of unknown function DUF2235 [Macrophomina phaseolina MS6]
Length = 198
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 52/95 (54%), Positives = 70/95 (73%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPNQT+Y NL +K+ K+ LKR LY +FS YG + D++ LKT K+RGQA +VF ++ A+
Sbjct: 21 PPNQTLYCSNLPDKLPKKNLKRQLYLIFSTYGSVLDIITLKTIKMRGQAHIVFQDIPKAT 80
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+R +Q F F+ K M IQYAKSKS+ VAK DG+F
Sbjct: 81 QAMRSLQGFEFFGKKMSIQYAKSKSNYVAKLDGTF 115
>gi|443898291|dbj|GAC75628.1| spliceosomal protein snRNP-U1A/U2B [Pseudozyma antarctica T-34]
Length = 344
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 72/222 (32%), Positives = 113/222 (50%), Gaps = 10/222 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P+ T+Y+KN+ KIKK EL+R LY LFS YGR+ DVVA + P +RGQA+VVF T ++
Sbjct: 127 PSPTLYVKNIEGKIKKPELRRQLYSLFSAYGRVLDVVATRAPGMRGQAFVVFENPTTSTA 186
Query: 68 AVRQMQNFPFYDKPMRIQYAK-SKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS 126
A R + +F FY K + I YA +KS + + + + + K RR E+
Sbjct: 187 AKRALHSFVFYGKELHIDYATGAKSRAILRREIGHDAVHEMDLERSKTTVSRRGEKRTVE 246
Query: 127 SMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEV 186
S + + G A +A+ + ++ ++P +L+ LF + G+ EV
Sbjct: 247 SKPDSDDEEDAGRKRAKLEDADEK-------VVKALDVPEAIEVGVLQALFARQEGYVEV 299
Query: 187 RMIEAKPG--IAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226
+ E K G A VEFED ++ A AL ++ P + +
Sbjct: 300 TVSEQKAGTWTAKVEFEDAQKARAAKDALNNIQLDPTYSLTL 341
>gi|347829902|emb|CCD45599.1| hypothetical protein [Botryotinia fuckeliana]
Length = 201
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/96 (56%), Positives = 72/96 (75%), Gaps = 1/96 (1%)
Query: 7 PPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
PPNQTIYI NL + KI+K++L+R LY L S YG + DV+ALK+ K+RGQA VV+ ++ A
Sbjct: 15 PPNQTIYITNLPSSKIQKDDLRRELYTLCSTYGPVLDVIALKSMKMRGQAHVVYRDIQTA 74
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+ A+R +Q F F + M IQYAKSKSD +AK DG+F
Sbjct: 75 TQAMRALQGFEFLGREMNIQYAKSKSDTIAKLDGTF 110
>gi|389586007|dbj|GAB68736.1| U1A small nuclear ribonucleoprotein [Plasmodium cynomolgi strain B]
Length = 376
Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 89/125 (71%), Gaps = 3/125 (2%)
Query: 1 MITGD--IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVV 58
+IT D IPPN+T+Y+KNLN++IK +E+K+SL LF QYG I D+V +K+ +GQAWVV
Sbjct: 195 VITADPSIPPNETLYVKNLNDRIKIDEMKKSLKDLFKQYGVIEDLVVMKSFWRKGQAWVV 254
Query: 59 FSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK-KKQEEKAERK 117
+ V +++ A+ +Q F + K M+I Y+ +KSD +K DG+FV R K+ KK ++ ER+
Sbjct: 255 YDTVESSTKALNALQGFVLFGKIMQINYSHNKSDVHSKRDGTFVERSKEPKKPKQILERE 314
Query: 118 RRAEE 122
R+ +E
Sbjct: 315 RKQKE 319
>gi|452980615|gb|EME80376.1| hypothetical protein MYCFIDRAFT_31866 [Pseudocercospora fijiensis
CIRAD86]
Length = 200
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 73/96 (76%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+ PNQ++YI+NL EK++K +LKR+LY L S YG + D+ ALKTPK+RGQA V+F +V +A
Sbjct: 17 VTPNQSLYIQNLPEKLQKADLKRNLYMLLSTYGPVLDITALKTPKMRGQAHVLFRDVNSA 76
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+ A+R Q + F+ + M+I YAKS+S+ +AK G+F
Sbjct: 77 TQAMRHCQGYEFFGREMKISYAKSRSNTLAKLTGTF 112
>gi|224068350|ref|XP_002302718.1| predicted protein [Populus trichocarpa]
gi|222844444|gb|EEE81991.1| predicted protein [Populus trichocarpa]
Length = 99
Score = 116 bits (291), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 52/85 (61%), Positives = 69/85 (81%), Gaps = 1/85 (1%)
Query: 3 TG-DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61
TG ++ N TIYI NLNEKIK +ELK++L+ +FSQ+G+I +++A KT K +GQAWVVF +
Sbjct: 14 TGTEVSSNMTIYINNLNEKIKIDELKKALHAVFSQFGKILEILAFKTLKHKGQAWVVFED 73
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQY 86
V +ASNA+RQMQ+FPFYDKPM Y
Sbjct: 74 VQSASNAMRQMQSFPFYDKPMVCLY 98
>gi|336265862|ref|XP_003347701.1| hypothetical protein SMAC_03799 [Sordaria macrospora k-hell]
Length = 232
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 71/229 (31%), Positives = 125/229 (54%), Gaps = 9/229 (3%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y++NL E++K E LK +L +FS+YG + D+VA K +GQA+VVF + +A
Sbjct: 8 PIATVYVRNLEERVKPEPLKEALRTIFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQA 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA--QQ 125
A+ ++Q F ++KPM + AK++SD + G+ ++ K++ + K+RA E QQ
Sbjct: 68 AIEELQGFELFEKPMLVALAKTRSDATVIQTGNEEEFDQHKRRRIAEKDKKRALEVAEQQ 127
Query: 126 SSMANGT-GAQSNGGTAASFRNANTQETA-APNNILFIQNLPHETTSSMLEMLFQQYPGF 183
+ + GA + A + R A + T P + NLP + L +F ++ GF
Sbjct: 128 NRLKRPLQGAAPDARPAKNQRGAGLKATGQGPAAV----NLPDDFGKDDLTAIFSRFEGF 183
Query: 184 KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI-TPQNPMAITFAKK 231
+EVR + + GIAFVE++ + + A + G + + M +T+ ++
Sbjct: 184 REVRTVPGRSGIAFVEYDAEAGAIAAKENTAGMALKNGEKVMKVTYQRQ 232
>gi|406862452|gb|EKD15502.1| RNA recognition domain-containing protein [Marssonina brunnea f.
sp. 'multigermtubi' MB_m1]
Length = 211
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 56/102 (54%), Positives = 76/102 (74%), Gaps = 4/102 (3%)
Query: 4 GDIP---PNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVF 59
G+IP PNQ++Y+ NL + KI+K +L+ SLY LFS YG + DVVALKT K+RGQA VV+
Sbjct: 20 GNIPSYAPNQSLYVTNLPSSKIQKSDLRISLYMLFSTYGPVLDVVALKTMKMRGQAHVVY 79
Query: 60 SEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+V A+ A+R +Q F + + M+IQYAKSKSD +AK DG+F
Sbjct: 80 RDVQTATQAMRALQGFELFGRQMQIQYAKSKSDVIAKLDGTF 121
>gi|367018898|ref|XP_003658734.1| hypothetical protein MYCTH_2294867 [Myceliophthora thermophila ATCC
42464]
gi|347006001|gb|AEO53489.1| hypothetical protein MYCTH_2294867 [Myceliophthora thermophila ATCC
42464]
Length = 200
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
+PPNQT+Y+ NL + KI+KE+L+ +LY LFS YG + DVVALKT K+RGQA +V+ ++
Sbjct: 17 VPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGSVLDVVALKTMKMRGQAHIVYKDIQT 76
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+ A+R + F F+ + M+I YAKSKS+ +AK DG+F
Sbjct: 77 ATQAMRALNGFEFFGREMKISYAKSKSNIIAKLDGTF 113
>gi|90086371|dbj|BAE91738.1| unnamed protein product [Macaca fascicularis]
Length = 147
Score = 116 bits (290), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 68/150 (45%), Positives = 92/150 (61%), Gaps = 3/150 (2%)
Query: 82 MRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTA 141
MRIQYAK+ SD ++K G+F +EKKK++++ ++ A + G G ++ T
Sbjct: 1 MRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKAVEQTATTTNKKP---GQGTPNSANTQ 57
Query: 142 ASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFE 201
+ PN ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEFE
Sbjct: 58 GNTTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFE 117
Query: 202 DDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 118 NDGQAGAARDALQGFKITPSHAMKITYAKK 147
>gi|116181854|ref|XP_001220776.1| hypothetical protein CHGG_01555 [Chaetomium globosum CBS 148.51]
gi|88185852|gb|EAQ93320.1| hypothetical protein CHGG_01555 [Chaetomium globosum CBS 148.51]
Length = 196
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
+PPNQT+Y+ NL + KI+KE+L+ +LY LFS YG + DVVALKT K+RGQA +V+ ++
Sbjct: 17 VPPNQTLYVTNLPSAKIQKEDLRTALYMLFSTYGAVLDVVALKTMKMRGQAHIVYKDIQT 76
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+ A+R + F F+ + M+I YAKSKS+ +AK DG+F
Sbjct: 77 ATQAMRSLDGFEFFGQEMKISYAKSKSNVIAKLDGTF 113
>gi|401411093|ref|XP_003884994.1| putative small nuclear ribonucleoprotein U1A [Neospora caninum
Liverpool]
gi|325119413|emb|CBZ54966.1| putative small nuclear ribonucleoprotein U1A [Neospora caninum
Liverpool]
Length = 399
Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 49/96 (51%), Positives = 73/96 (76%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPNQTIYI N+N+K+K ELK +L +F Q+G I ++VA+ + RGQAW+VF+ V +A
Sbjct: 124 IPPNQTIYINNINDKVKLPELKENLRSMFKQFGEIREIVAMSSFWRRGQAWIVFASVESA 183
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+ A++ MQ F ++ +P+RI Y+ +KSD +AKEDG+F
Sbjct: 184 TKAIQGMQGFVYHGQPLRINYSVTKSDIIAKEDGTF 219
Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 39/115 (33%), Positives = 65/115 (56%), Gaps = 2/115 (1%)
Query: 117 KRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
KR+AE A +S A G + + A PN +LF++NLP + T L L
Sbjct: 287 KRKAESALPNSQAAKHGVPFPPAAPVAPPTVDMSFPAMPNKVLFLENLPEDATMEGLISL 346
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F ++ G EVR + + +AFVE+E+++ ++ AM ALQG ++ +P+ IT+A++
Sbjct: 347 FSKHAGMVEVRPVLWR-RVAFVEYENEMLAANAMNALQGHQMN-GSPIKITYARR 399
>gi|398395477|ref|XP_003851197.1| hypothetical protein MYCGRDRAFT_30914, partial [Zymoseptoria
tritici IPO323]
gi|339471076|gb|EGP86173.1| hypothetical protein MYCGRDRAFT_30914 [Zymoseptoria tritici IPO323]
Length = 111
Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 72/95 (75%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQ++YI+NL EK++K +LKR+LY LFS YG + D+ ALKTPK+RGQA ++F ++ +A
Sbjct: 2 PNQSLYIQNLPEKLQKSDLKRNLYMLFSTYGPVIDITALKTPKMRGQAHILFRDINSAQL 61
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+R + N F+ + MRI YAKS+S +AK G+FV
Sbjct: 62 AMRNLNNMEFFGREMRIAYAKSRSQTIAKLTGTFV 96
>gi|392593039|gb|EIW82365.1| RNA-binding domain-containing protein [Coniophora puteana
RWD-64-598 SS2]
Length = 154
Score = 115 bits (288), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 61/142 (42%), Positives = 90/142 (63%), Gaps = 15/142 (10%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+ P+ T+YI NLN+K+ KEEL+ LY LF+ +G++ DVVA K PK+RGQA++VFS++ +A
Sbjct: 3 VQPSPTLYINNLNDKVNKEELRIQLYALFTTHGKLIDVVASKGPKMRGQAFLVFSDLASA 62
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKS-DCVAKEDGSFVPREK-----------KKKQEEK 113
+ A+R + FYDKP+RI YAK KS + KED FVP K++ E+
Sbjct: 63 TTAMRACEGMVFYDKPLRIAYAKEKSYATLRKEDPDFVPPNSLHAQNNPALAAKRQLEDG 122
Query: 114 A---ERKRRAEEAQQSSMANGT 132
A ER+R+ E+A+ +G
Sbjct: 123 ATDGERQRKREKAEDDDNDDGV 144
>gi|452837349|gb|EME39291.1| hypothetical protein DOTSEDRAFT_138688 [Dothistroma septosporum
NZE10]
Length = 206
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 50/98 (51%), Positives = 73/98 (74%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
+ PP+Q++Y++NLNEK++K +LKR+LY LFS YG + D+ ALKT K+RGQA V+F + +
Sbjct: 14 NTPPSQSLYVRNLNEKLQKPDLKRNLYMLFSTYGPVIDITALKTSKMRGQAHVLFRDQQS 73
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+ A+R Q F+ + MRI YAKS+S +AK G+FV
Sbjct: 74 ATQAMRHCQGSDFFGREMRISYAKSRSHTLAKLTGTFV 111
>gi|380494672|emb|CCF32976.1| RNA recognition domain-containing protein [Colletotrichum
higginsianum]
Length = 204
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 72/97 (74%), Gaps = 1/97 (1%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
I PNQT+Y+ NL + KI+K++L+ LY LFS YG + D+VALKT K+RGQA + F +V
Sbjct: 23 ISPNQTLYVTNLPSNKIQKQDLRTELYLLFSTYGPVLDIVALKTMKMRGQAHITFRDVQT 82
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+ A+R ++ F F +P+ IQYAKSKSD VAK DG++
Sbjct: 83 ATQAMRSLEGFEFLGRPLTIQYAKSKSDFVAKLDGTY 119
>gi|156102613|ref|XP_001616999.1| U1A small nuclear ribonucleoprotein [Plasmodium vivax Sal-1]
gi|148805873|gb|EDL47272.1| U1A small nuclear ribonucleoprotein, putative [Plasmodium vivax]
Length = 504
Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 89/125 (71%), Gaps = 3/125 (2%)
Query: 1 MITGD--IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVV 58
+IT D IPPN+T+Y+KNLN++IK +E+K++L LF QYG I D+V +K+ +GQAWVV
Sbjct: 216 VITADPSIPPNETLYVKNLNDRIKIDEMKKNLKDLFKQYGVIEDLVVMKSFWRKGQAWVV 275
Query: 59 FSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK-KKQEEKAERK 117
+ V +++ A+ +Q F + K M+I Y+ +KSD +K DG+FV R K+ KK ++ ER+
Sbjct: 276 YDNVESSTKALNALQGFVLFGKIMQINYSHNKSDVHSKRDGTFVERSKEPKKPKQILERE 335
Query: 118 RRAEE 122
R+ +E
Sbjct: 336 RKQKE 340
>gi|259484735|tpe|CBF81211.1| TPA: U1 small nuclear ribonucleoprotein A, putative
(AFU_orthologue; AFUA_6G06490) [Aspergillus nidulans
FGSC A4]
Length = 188
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 71/95 (74%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K++K +L+ +LY LFS YG + D+VA+KT K+RGQA VVF ++ A++
Sbjct: 19 PNQTLYCTNLPDKLRKYDLRLALYTLFSTYGTVLDIVAMKTEKMRGQAHVVFKDIQASTQ 78
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+R +Q F F+ KPM+I YAK SD +A+ G++V
Sbjct: 79 AMRALQGFEFFGKPMKIVYAKGSSDVIARLRGTYV 113
Score = 37.4 bits (85), Expect = 5.3, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 155 PNNILFIQNLPHETTSSMLEM----LFQQYPGFKEVRMI--EAKPGIAFVEFEDDVQSSM 208
PN L+ NLP + L + LF Y ++ + E G A V F+D S+
Sbjct: 19 PNQTLYCTNLPDKLRKYDLRLALYTLFSTYGTVLDIVAMKTEKMRGQAHVVFKDIQASTQ 78
Query: 209 AMQALQGFKITPQNPMAITFAK 230
AM+ALQGF+ PM I +AK
Sbjct: 79 AMRALQGFEFF-GKPMKIVYAK 99
>gi|429858035|gb|ELA32870.1| RNA binding domain-containing protein [Colletotrichum
gloeosporioides Nara gc5]
Length = 196
Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 72/97 (74%), Gaps = 1/97 (1%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
I PNQT+Y+ NL + KI+K +L+ LY LFS YG + D+VA+KT K+RGQA + F ++ A
Sbjct: 23 ISPNQTLYVTNLPSAKIQKNDLRTELYLLFSTYGPVLDIVAMKTMKMRGQAHITFRDIQA 82
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+ A+R ++ F F +P+ IQYAKSKSD VAK DG++
Sbjct: 83 ATQAMRSLEGFEFLGRPLSIQYAKSKSDFVAKLDGTY 119
>gi|70947892|ref|XP_743519.1| u1 small nuclear ribonucleoprotein a [Plasmodium chabaudi chabaudi]
gi|56523052|emb|CAH75488.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium chabaudi
chabaudi]
Length = 444
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 89/125 (71%), Gaps = 3/125 (2%)
Query: 1 MITGD--IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVV 58
+IT D IPPN+T+Y+KNLN+KIK E++K+SL +F+QYG I D++ +K+ +GQAW+V
Sbjct: 152 VITADPNIPPNETLYVKNLNDKIKCEDMKKSLKNIFNQYGLIEDIIVMKSFWRKGQAWIV 211
Query: 59 FSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK-KKQEEKAERK 117
+ + +++ A+ +Q F + K M+I Y+ +KSD K +G+FV R K+ KK ++ ER+
Sbjct: 212 YDTIESSTKALNALQGFVLFGKIMQINYSHNKSDVHTKRNGTFVERSKEPKKPKQIIERE 271
Query: 118 RRAEE 122
R+ +E
Sbjct: 272 RKQKE 276
>gi|358379777|gb|EHK17456.1| hypothetical protein TRIVIDRAFT_194675 [Trichoderma virens Gv29-8]
Length = 196
Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
IPPNQT+Y+ NL + KI+K +L+ +LY LFS +G + D+VALKT ++RGQA +VF ++ A
Sbjct: 23 IPPNQTLYVTNLPSAKIQKPDLRTALYMLFSTFGPVLDIVALKTMEMRGQAHIVFRDIQA 82
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+ A+R + F +PM+IQYAKSKS VAK DG+F
Sbjct: 83 ATQAMRSLDGQTFLGRPMKIQYAKSKSHFVAKLDGTF 119
>gi|448116767|ref|XP_004203101.1| Piso0_000700 [Millerozyma farinosa CBS 7064]
gi|359383969|emb|CCE78673.1| Piso0_000700 [Millerozyma farinosa CBS 7064]
Length = 218
Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust.
Identities = 73/231 (31%), Positives = 126/231 (54%), Gaps = 14/231 (6%)
Query: 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61
+T DI +TIY++NLN++I +LK +L F YGRI + A K K++GQA++ F
Sbjct: 1 MTQDI---ETIYVRNLNDRISLNKLKPALEEKFQAYGRIIQLTAHKNLKMKGQAFITFES 57
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAE 121
++ NAV + N + KPM++ +AKS S D ++ E + +E ERKR
Sbjct: 58 SESSKNAVEKANNIILFGKPMQVSFAKSNS------DNFYLQVE--QNEEPVQERKRHKA 109
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYP 181
E + A+ T + + AS ++ + + PN IL +QNL ++TT+ L F Y
Sbjct: 110 ELSEKQTASNTKP-TKAASKASTKDLQSWKDIPPNKILLLQNLRNDTTNQELNEYFDAYD 168
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITP-QNPMAITFAKK 231
GF +R+++ + + FVEFE++ S+ ++ ++ + + +T+AKK
Sbjct: 169 GFINLRLVKIR-NLCFVEFENESASTKCLENADYERLKSFGDHIILTYAKK 218
>gi|330905989|ref|XP_003295311.1| hypothetical protein PTT_00381 [Pyrenophora teres f. teres 0-1]
gi|311333503|gb|EFQ96597.1| hypothetical protein PTT_00381 [Pyrenophora teres f. teres 0-1]
Length = 198
Score = 113 bits (282), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 49/90 (54%), Positives = 71/90 (78%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQ 71
+Y++NL +K++KE LKR+LY LF+ YG I D+VALKT K+RGQA VVF +V +++ A+R
Sbjct: 40 LYVRNLPDKLQKEHLKRNLYMLFATYGVILDIVALKTMKMRGQAHVVFRDVDSSTQAMRA 99
Query: 72 MQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+Q F F+ K M+I YAK+KSD +AK DG++
Sbjct: 100 LQAFTFFGKDMQISYAKTKSDTIAKLDGTY 129
>gi|82596021|ref|XP_726090.1| U1 small nuclear ribonucleoprotein a [Plasmodium yoelii yoelii
17XNL]
gi|23481350|gb|EAA17655.1| u1 small nuclear ribonucleoprotein a [Plasmodium yoelii yoelii]
Length = 508
Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 81/276 (29%), Positives = 133/276 (48%), Gaps = 65/276 (23%)
Query: 1 MITGD--IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVV 58
+IT D IPPN+T+YIKNLN+KIK E++K+SL +F+QYG I D++ +K+ +GQAW+V
Sbjct: 176 VITADPNIPPNETLYIKNLNDKIKCEDMKKSLKNIFNQYGLIEDIIVMKSFWRKGQAWIV 235
Query: 59 FSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK-KKQEEKAERK 117
+ + +++ A+ +Q F + K M+I Y+ +KSD K +G+FV R K+ KK ++ ER+
Sbjct: 236 YDTIESSTKALNALQGFVLFGKIMQINYSHNKSDVHTKRNGTFVERSKEPKKPKQIIERE 295
Query: 118 RRA----EEAQQSSM---ANGTGAQSNGG------------------------------- 139
++ E+ QQ+ N A N G
Sbjct: 296 KKQKEIFEKMQQNYFEMQINHIKAMHNEGLERNKNFDLSQMDKETLIARAQQKANEEKKR 355
Query: 140 ----------TAASFRNANTQETAAPNNILFIQNLP-------------HETTSSMLEML 176
T + N + + A NN IQN P + +
Sbjct: 356 KKGEDPLQNNTNYNIPNIHPPQFYAMNNFAPIQNNPVIPYKILFVENVDENVNTEAFNDI 415
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQA 212
F+ + GF E R+I + +AFV++ D+ ++ AM+
Sbjct: 416 FKAFSGFVEARIIPQR-NVAFVDYTDESSATSAMKG 450
>gi|320032581|gb|EFW14533.1| hypothetical protein CPSG_08791 [Coccidioides posadasii str.
Silveira]
Length = 182
Score = 112 bits (281), Expect = 9e-23, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 72/102 (70%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
TG PNQT+Y NL +K++K +L+ +LY LFS YG + DVVA+KT K+RGQA VVF ++
Sbjct: 8 TGVGVPNQTLYCTNLPDKLRKLDLRLALYTLFSTYGTVLDVVAMKTEKMRGQAHVVFRDI 67
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPR 104
++ A+R +Q F F+ K MRI YAK SD +AK G++ P+
Sbjct: 68 QTSTQAMRALQGFNFFGKEMRIVYAKGNSDIIAKLRGTYAPQ 109
>gi|408396032|gb|EKJ75200.1| hypothetical protein FPSE_04591 [Fusarium pseudograminearum CS3096]
Length = 202
Score = 112 bits (281), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 74/97 (76%), Gaps = 1/97 (1%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
IPPNQT+Y+ NL + KI+K++L+ +LY LFS YG + DVVALKT K+RGQA + F +V +
Sbjct: 24 IPPNQTLYVTNLPSSKIQKDDLRTALYLLFSTYGPVLDVVALKTMKMRGQAHITFRDVQS 83
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+ A+R ++ F + ++IQYAKSKS+ VAK DG+F
Sbjct: 84 ATQAMRSLEGQSFLGRDLKIQYAKSKSNFVAKLDGTF 120
>gi|440633480|gb|ELR03399.1| hypothetical protein GMDG_06136 [Geomyces destructans 20631-21]
Length = 213
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/96 (55%), Positives = 71/96 (73%), Gaps = 1/96 (1%)
Query: 7 PPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
PPNQT+YI NL + KI+K +L+ SLY LFS YG + DVVA+KT K+RGQA VVF + A
Sbjct: 20 PPNQTLYITNLPSSKIQKYDLRLSLYTLFSTYGPVLDVVAMKTMKMRGQAHVVFRDAQTA 79
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+ A+R ++ F F+ + IQYAKSKSD ++K DG+F
Sbjct: 80 TQAMRALKGFEFFGYELDIQYAKSKSDTISKLDGTF 115
>gi|68074359|ref|XP_679094.1| u1 small nuclear ribonucleoprotein a [Plasmodium berghei strain
ANKA]
gi|56499751|emb|CAH97936.1| u1 small nuclear ribonucleoprotein a, putative [Plasmodium berghei]
Length = 371
Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 53/125 (42%), Positives = 88/125 (70%), Gaps = 3/125 (2%)
Query: 1 MITGD--IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVV 58
+IT D IPPN+T+YIKNLN+KIK E++K+SL +F+QYG I D++ +K+ +GQAW+V
Sbjct: 79 VITADPNIPPNETLYIKNLNDKIKCEDMKKSLKNIFNQYGLIEDIIVMKSFWRKGQAWIV 138
Query: 59 FSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK-KKQEEKAERK 117
+ + +++ A+ +Q F + K M+I Y+ +KSD K +G+F+ R K KK ++ ER+
Sbjct: 139 YDTIESSTKALNSLQGFVLFGKIMQINYSHNKSDVHTKRNGTFIERSKDPKKPKQIIERE 198
Query: 118 RRAEE 122
++ +E
Sbjct: 199 KKQKE 203
>gi|259016063|gb|ACV89313.1| sans fille [Blattella germanica]
Length = 105
Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 61/147 (41%), Positives = 77/147 (52%), Gaps = 42/147 (28%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V F E+ ++S A+R MQ FPFYDKPMRIQYAK SD +AK G++ R KK K
Sbjct: 1 KMRGQAFVCFKEIQSSSTALRSMQGFPFYDKPMRIQYAKVDSDIIAKMKGTYQQRPKKMK 60
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
+ PN ILF+ NLP ET+
Sbjct: 61 DQ------------------------------------------PPNQILFLTNLPEETS 78
Query: 170 SSMLEMLFQQYPGFKEVRMIEAKPGIA 196
ML MLF Q+PGFKEVR++ + IA
Sbjct: 79 EMMLAMLFNQFPGFKEVRLVPNRHDIA 105
>gi|50551277|ref|XP_503112.1| YALI0D21450p [Yarrowia lipolytica]
gi|49648980|emb|CAG81306.1| YALI0D21450p [Yarrowia lipolytica CLIB122]
Length = 226
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 78/233 (33%), Positives = 122/233 (52%), Gaps = 17/233 (7%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
I P +TIYI+N+NEKIK LK +L + +YG + DVVA +LRGQA+VVF + +A
Sbjct: 4 IAPCETIYIRNINEKIKIPTLKTTLKEICKEYGDVLDVVAHGNLRLRGQAFVVFDSIDSA 63
Query: 66 SNAVRQMQNFP---FYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAE- 121
+A+ + + + + YAKS SD + G K+ + R R A+
Sbjct: 64 ESAISALNSTKVDGLKGSVVEVTYAKSPSDATMAKKGD--------KELDAHVRARVAQK 115
Query: 122 EAQQSSMANGTGAQ--SNGGTAASFRNANTQETAAP-NNILFIQNLPHETTSSMLEMLFQ 178
E +Q S +N A+ T A +T+ T P + IL +QNLP + + LF
Sbjct: 116 ELKQLSDSNKRRAEPVRTAETPAKKAKTSTETTYNPVHKILLLQNLPKSASQDTVAALFS 175
Query: 179 QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PG+ EVR++ A+ + F EFE + Q+ +A + QG I + + +++AKK
Sbjct: 176 DLPGYVEVRLVPARQ-VGFAEFETEAQAVVAKEKSQGADIDGEK-LIVSYAKK 226
>gi|302926259|ref|XP_003054259.1| hypothetical protein NECHADRAFT_90073 [Nectria haematococca mpVI
77-13-4]
gi|256735200|gb|EEU48546.1| hypothetical protein NECHADRAFT_90073 [Nectria haematococca mpVI
77-13-4]
Length = 197
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/97 (53%), Positives = 73/97 (75%), Gaps = 1/97 (1%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
IPPNQT+Y+ NL + KI+K +L+ +LY LFS YG + DVVALKT +RGQA +VF ++ A
Sbjct: 22 IPPNQTLYVTNLPSSKIQKADLRTALYMLFSTYGPVLDVVALKTMAMRGQAHIVFRDIQA 81
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+ A+R ++ F + ++IQYAKSKS+ VAK DG+F
Sbjct: 82 ATQAMRSLEGQTFLGRELKIQYAKSKSNFVAKLDGTF 118
>gi|358373502|dbj|GAA90100.1| RNA binding domain protein [Aspergillus kawachii IFO 4308]
Length = 196
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K++K +L+ SLY LFS YG + DVVA+KT K+RGQA +VF +V A++
Sbjct: 23 PNQTLYCTNLPDKLRKHDLRLSLYMLFSTYGTVLDVVAMKTQKMRGQAHIVFKDVQASTQ 82
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF-VPREKKKKQEEKA 114
A+R +Q F F+ K M+I YAK SD +A+ G++ VP Q A
Sbjct: 83 AMRALQGFEFFGKQMKIVYAKGPSDVIARLRGTYSVPTTTSAGQTTGA 130
Score = 39.3 bits (90), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 152 TAAPNNILFIQNLP-----HETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDV 204
T PN L+ NLP H+ S L MLF Y +V ++ + G A + F+D
Sbjct: 20 TGLPNQTLYCTNLPDKLRKHDLRLS-LYMLFSTYGTVLDVVAMKTQKMRGQAHIVFKDVQ 78
Query: 205 QSSMAMQALQGFKITPQNPMAITFAK 230
S+ AM+ALQGF+ + M I +AK
Sbjct: 79 ASTQAMRALQGFEFFGKQ-MKIVYAK 103
>gi|343426466|emb|CBQ69996.1| related to U2 small nuclear ribonucleoprotein B [Sporisorium
reilianum SRZ2]
Length = 237
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 74/225 (32%), Positives = 111/225 (49%), Gaps = 26/225 (11%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P+ T+YIKN+ KIKK EL+ L+ LF+ YGRI DVVA + P +RGQA+VVF A++
Sbjct: 18 PSPTLYIKNIEGKIKKPELRAQLHALFTTYGRILDVVATRAPHMRGQAFVVFESAGVAAS 77
Query: 68 AVRQMQNFPFYDKPMRIQYA---KSK--------SDCVAKEDGSFVPREKKKKQEEKAER 116
A R + F FY +P+ I Y+ KS+ +D V + D EK + + + E
Sbjct: 78 AKRALDGFAFYGRPLHIAYSTGGKSRALLRRELGADAVHEMD-----LEKSRTMDARREA 132
Query: 117 KRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
KR A Q A + G A A ++ +N+P+ S+L L
Sbjct: 133 KRALVSASQDDAAEQEDEEEGGRKRAKL---------AGEAVVQARNIPNTIEESVLTTL 183
Query: 177 FQQYPGFKEVRMI-EAKPGIAFVEFEDDVQSSMAMQALQGFKITP 220
F +PGF + +A+ A + F+ D + A AL G ++ P
Sbjct: 184 FSAHPGFLALSPTKDAETWSATITFDTDENAHAAQSALLGVQLDP 228
>gi|449295164|gb|EMC91186.1| hypothetical protein BAUCODRAFT_59124, partial [Baudoinia
compniacensis UAMH 10762]
Length = 97
Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 50/96 (52%), Positives = 70/96 (72%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQ+IYI+NL EK++KE+L+R LY LFS YG + DV+ALKT K+RGQA V +V +A+
Sbjct: 1 PNQSIYIQNLPEKLQKEDLRRELYMLFSTYGPVLDVIALKTAKMRGQAHVTMRDVQSATQ 60
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVP 103
A+R Q F + MR+ Y+K++SD +AK G+F P
Sbjct: 61 AIRACQGFELCGREMRLSYSKNRSDAIAKLTGTFNP 96
>gi|258564638|ref|XP_002583064.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
gi|237908571|gb|EEP82972.1| conserved hypothetical protein [Uncinocarpus reesii 1704]
Length = 183
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 69/96 (71%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K+KK +L+ +LY LFS YG + DVVA+KT K+RGQA +VF ++ ++
Sbjct: 13 PNQTLYCSNLPDKVKKPDLRLALYTLFSTYGVVLDVVAMKTEKMRGQAHIVFRDIQTSTQ 72
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVP 103
A+R +Q F F+ K +RI YAK SD +AK G++ P
Sbjct: 73 AMRALQGFNFFGKEIRIVYAKGSSDIIAKLRGTYAP 108
>gi|294655401|ref|XP_457541.2| DEHA2B13684p [Debaryomyces hansenii CBS767]
gi|199429929|emb|CAG85550.2| DEHA2B13684p [Debaryomyces hansenii CBS767]
Length = 252
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 71/230 (30%), Positives = 121/230 (52%), Gaps = 15/230 (6%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
T D +T+Y+ NLN+K+ +LK L +F +YG+I + A K K++GQA+V F
Sbjct: 37 TNDAESTETVYVNNLNDKVSVNKLKGELESVFQKYGKIIQITAHKNLKMKGQAFVTFENK 96
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
TA+ A+ +Q + KPM ++YA+S SD R+ K +E RK+ +
Sbjct: 97 TASEAAIHGLQEHELFGKPMHVEYARSNSDNYY--------RDILKDEEAIEIRKQLKMK 148
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
A + + + G + + + A T + PN IL IQNL E T+ L F+ Y G
Sbjct: 149 ANEQAAGDAKGVKK-----SGVKKAQTWKAIPPNKILLIQNLKPEITNGDLLEFFEAYGG 203
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA-ITFAKK 231
F R+++ + ++F+EFE+++ ++ ++ L K+ A +T+AKK
Sbjct: 204 FINSRLVKVR-NLSFIEFENEMSATNCLEDLTKEKLEQFGTDALVTYAKK 252
>gi|154278922|ref|XP_001540274.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
gi|150412217|gb|EDN07604.1| conserved hypothetical protein [Ajellomyces capsulatus NAm1]
Length = 190
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 69/94 (73%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K+KK +L+ +LY LFS YG + D+VA+KT K+RGQA VVF ++ A++
Sbjct: 15 PNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDIVAMKTAKMRGQAHVVFRDIQASTQ 74
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+R +Q F F+ K M+I YAK SD +AK G++
Sbjct: 75 AMRALQGFEFFGKEMKIVYAKGSSDIIAKLRGTY 108
>gi|440294232|gb|ELP87249.1| U2 small nuclear ribonucleoprotein B'', putative [Entamoeba
invadens IP1]
Length = 251
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 77/236 (32%), Positives = 115/236 (48%), Gaps = 24/236 (10%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+YI NL + K +LK L LFS +G + V K +RGQA+VV++ + AA +A
Sbjct: 25 TLYINNLTQAFKPSKLKAHLTKLFSPFGVVLTVQVRKARAMRGQAFVVYNSMDAAEHAFL 84
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMAN 130
+Q+ + +PM I YAK++SD G + R KK K AE K A+ + N
Sbjct: 85 SLQDNSLFGRPMHIAYAKTESDAFVASTGRKISRVKKPKS---AELKISAQNESAPNQVN 141
Query: 131 GTGAQSNGGTAASFRNA-------NTQETAAP-------NNILFIQNLPHETTSSMLEML 176
G + G R+ N Q P N ILFI+N+P L L
Sbjct: 142 -VGTSAVDGVGKVQRDLTNDTNPQNEQTRVQPKIEKPMINKILFIENVPKNYGKDELIAL 200
Query: 177 FQQYPGFKEVRMIEAK-PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+ +Y GF EVR I+ + G+AF+EF D+ S +A+ G ++ + + +AKK
Sbjct: 201 YTKYSGFSEVRYIKVRGSGVAFIEFRDEQSSEIALNETNG-----KDGLVLQYAKK 251
>gi|303313750|ref|XP_003066884.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
gi|240106551|gb|EER24739.1| RNA recognition motif containing protein [Coccidioides posadasii
C735 delta SOWgp]
Length = 182
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 50/102 (49%), Positives = 72/102 (70%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
TG PNQT+Y NL +K++K +L+ +LY LFS YG + DVVA+KT K+RGQA VVF ++
Sbjct: 8 TGVGVPNQTLYCTNLPDKLRKLDLRLALYTLFSTYGTVLDVVAMKTEKMRGQAHVVFRDI 67
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPR 104
++ A+R +Q F F+ K M+I YAK SD +AK G++ P+
Sbjct: 68 QTSTQAMRALQGFNFFGKEMKIVYAKGNSDIIAKLRGTYAPQ 109
>gi|225554392|gb|EEH02691.1| RNA binding domain-containing protein [Ajellomyces capsulatus
G186AR]
Length = 190
Score = 111 bits (277), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 69/94 (73%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K+KK +L+ +LY LFS YG + D+VA+KT K+RGQA VVF ++ A++
Sbjct: 15 PNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDIVAMKTAKMRGQAHVVFRDIQASTQ 74
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+R +Q F F+ K M+I YAK SD +AK G++
Sbjct: 75 AMRALQGFEFFGKEMKIVYAKGSSDIIAKLRGTY 108
>gi|317037413|ref|XP_001399113.2| RNA binding domain protein [Aspergillus niger CBS 513.88]
Length = 196
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 52/108 (48%), Positives = 73/108 (67%), Gaps = 1/108 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K++K +L+ SLY LFS YG + DVVA+KT K+RGQA +VF +V A++
Sbjct: 23 PNQTLYCTNLPDKLRKHDLRLSLYMLFSTYGTVLDVVAMKTQKMRGQAHIVFKDVQASTQ 82
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF-VPREKKKKQEEKA 114
A+R +Q F F+ K M+I YAK SD +A+ G++ VP Q A
Sbjct: 83 AMRALQGFEFFGKQMKIVYAKGPSDVIARLRGTYNVPTTTSASQATGA 130
Score = 38.9 bits (89), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 44/86 (51%), Gaps = 9/86 (10%)
Query: 152 TAAPNNILFIQNLP-----HETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDV 204
T PN L+ NLP H+ S L MLF Y +V ++ + G A + F+D
Sbjct: 20 TGLPNQTLYCTNLPDKLRKHDLRLS-LYMLFSTYGTVLDVVAMKTQKMRGQAHIVFKDVQ 78
Query: 205 QSSMAMQALQGFKITPQNPMAITFAK 230
S+ AM+ALQGF+ + M I +AK
Sbjct: 79 ASTQAMRALQGFEFFGKQ-MKIVYAK 103
>gi|213407830|ref|XP_002174686.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces
japonicus yFS275]
gi|212002733|gb|EEB08393.1| U2 small nuclear ribonucleoprotein B [Schizosaccharomyces
japonicus yFS275]
Length = 119
Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 49/91 (53%), Positives = 68/91 (74%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
+ T+Y+ NLNEK++KE+L+ SLY LFS YG + DVVALKTPK+RGQA +VF + TAA+ A
Sbjct: 3 SHTLYVNNLNEKLRKEDLRTSLYLLFSTYGTVLDVVALKTPKMRGQAHIVFHDQTAAAIA 62
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDG 99
+ + NF F+ K M I+YAKS+S + + G
Sbjct: 63 KKTLTNFMFFGKEMHIEYAKSRSHALERVYG 93
>gi|119185131|ref|XP_001243379.1| hypothetical protein CIMG_07275 [Coccidioides immitis RS]
gi|392866259|gb|EAS28872.2| RNA binding domain-containing protein [Coccidioides immitis RS]
Length = 182
Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 70/97 (72%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K++K +L+ +LY LFS YG + DVVA+KT K+RGQA VVF ++ ++
Sbjct: 13 PNQTLYCTNLPDKLRKLDLRLALYTLFSTYGTVLDVVAMKTEKMRGQAHVVFRDIQTSTQ 72
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPR 104
A+R +Q F F+ K M+I YAK SD +AK G++ P+
Sbjct: 73 AMRALQGFNFFGKEMKIVYAKGNSDIIAKLRGTYAPQ 109
>gi|121709896|ref|XP_001272564.1| RNA binding domain protein [Aspergillus clavatus NRRL 1]
gi|119400714|gb|EAW11138.1| RNA binding domain protein [Aspergillus clavatus NRRL 1]
Length = 194
Score = 110 bits (275), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 69/94 (73%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K++K +L+ SLY LFS YG + DVVA+KT K+RGQA +VF +V A++
Sbjct: 22 PNQTLYCTNLPDKLRKYDLRLSLYTLFSTYGTVLDVVAMKTEKMRGQAHIVFKDVQASTQ 81
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+R +Q F F+ K M+I YAK SD +A+ G++
Sbjct: 82 AMRALQGFDFFGKEMKIVYAKGSSDVIARLRGTY 115
>gi|240273174|gb|EER36696.1| RNA binding domain-containing protein [Ajellomyces capsulatus H143]
gi|325089200|gb|EGC42510.1| RNA binding domain-containing protein [Ajellomyces capsulatus H88]
Length = 190
Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 69/94 (73%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K+KK +L+ +LY LFS YG + D+VA+KT K+RGQA VVF ++ A++
Sbjct: 15 PNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDIVAMKTAKMRGQAHVVFRDIQASTQ 74
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+R +Q F F+ K M+I YA+ SD +AK G++
Sbjct: 75 AMRALQGFEFFGKEMKIVYARGSSDIIAKLRGTY 108
>gi|413956010|gb|AFW88659.1| hypothetical protein ZEAMMB73_209786 [Zea mays]
Length = 61
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 51/60 (85%), Positives = 58/60 (96%)
Query: 172 MLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
ML++LFQQYPGF+EVRMIEAKPGIAFVEFEDD QS +AMQALQGFKITP+NPMAI++AKK
Sbjct: 2 MLQILFQQYPGFREVRMIEAKPGIAFVEFEDDGQSMVAMQALQGFKITPENPMAISYAKK 61
>gi|425868372|gb|AFY04318.1| sans fille, partial [Anopheles gambiae]
Length = 116
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 81/128 (63%), Gaps = 12/128 (9%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+++F E+++A+NA+R MQ FPFYDKPMRI+Y+K+ SD +AK G+F R K+ K
Sbjct: 1 KMRGQAFIIFKEISSATNAMRTMQGFPFYDKPMRIKYSKTDSDMIAKLKGTFQERPKRVK 60
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
Q + + + + +A++ A GA +N TA PN ILF+ NLP ET
Sbjct: 61 QPKPIQTEDK--KAKKLKNAGEVGATNNSATAEQ----------PPNQILFLTNLPEETN 108
Query: 170 SSMLEMLF 177
ML MLF
Sbjct: 109 EMMLSMLF 116
>gi|452979111|gb|EME78874.1| hypothetical protein MYCFIDRAFT_144592, partial [Pseudocercospora
fijiensis CIRAD86]
Length = 224
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 70/211 (33%), Positives = 112/211 (53%), Gaps = 11/211 (5%)
Query: 14 IKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQ 73
++ ++E+IK L + ++ F ++G I DVVA K K +GQA+VVF A A+ +Q
Sbjct: 1 VRGIDERIKIPTLIQEIHDTFGEFGTIIDVVAKKNLKAKGQAFVVFESPEEAEIAMEALQ 60
Query: 74 NFPFYDKPMRIQYAKSKSDC-VAKEDGSFVPREKKK--------KQEEKAERKRRAEEAQ 124
F +P+ I +AK++SD + K+DG E KK K+ E+A + +
Sbjct: 61 GFDLLGQPVTIAFAKTRSDATIKKDDGDEALEEWKKVRLAEKERKKAEEAAAEAAKPAKR 120
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ AN + T S NA E PN L +++ P E L LF ++PGFK
Sbjct: 121 PADAANLAERPAKSNTKPS--NAMADEYLPPNKTLILRDFPDEYGKDELSALFARFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQG 215
EVR++ + G+AFVE+ED++ + A +A+ G
Sbjct: 179 EVRVVPGRKGLAFVEYEDELGGTAAKEAMHG 209
>gi|402217410|gb|EJT97490.1| RNA-binding domain-containing protein, partial [Dacryopinax sp.
DJM-731 SS1]
Length = 176
Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 47/86 (54%), Positives = 63/86 (73%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+PPN +YI NLN+KI KEEL+ LY LF+ YG++ DVVA K K++GQA+VVF ++ A
Sbjct: 3 LPPNTCLYINNLNDKINKEELRAQLYALFTPYGKVIDVVARKGTKMKGQAFVVFGDLAGA 62
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKS 91
+ A+R M FYDKPM IQY ++KS
Sbjct: 63 TTAMRAMDGEFFYDKPMHIQYGRTKS 88
>gi|259016057|gb|ACV89310.1| sans fille [Hydropsyche phalerata]
Length = 102
Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust.
Identities = 58/144 (40%), Positives = 77/144 (53%), Gaps = 42/144 (29%)
Query: 53 GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
GQA+V+F E+++A+ A+R MQ FPFYDKPMRIQY K+ SD +AK G+F R K+ K++
Sbjct: 1 GQAFVIFKEISSATVALRNMQGFPFYDKPMRIQYCKTDSDVIAKMKGTFQERPKRIKEQ- 59
Query: 113 KAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSM 172
PN ILF+ NLP ET+ M
Sbjct: 60 -----------------------------------------PPNQILFLTNLPDETSEMM 78
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIA 196
L MLF Q+PGFKEVR++ + IA
Sbjct: 79 LSMLFNQFPGFKEVRLVPNRHDIA 102
>gi|212543363|ref|XP_002151836.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
marneffei ATCC 18224]
gi|210066743|gb|EEA20836.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
marneffei ATCC 18224]
Length = 177
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/95 (50%), Positives = 69/95 (72%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+YIKNL +KIKK +L+ +LY LFS YG + DVV LKT K+RGQA +V+ ++ A++
Sbjct: 18 PNQTLYIKNLPDKIKKPDLRMALYTLFSTYGPVLDVVVLKTAKMRGQAHIVYRDIQASTQ 77
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+R +Q F F+ K + I YAK S +AK G+++
Sbjct: 78 AMRALQGFDFFGKELNIVYAKGSSHVIAKLRGTYM 112
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 39/76 (51%), Gaps = 6/76 (7%)
Query: 147 ANTQETAAPNNILFIQNLPHETTSSMLEM----LFQQY-PGFKEVRMIEAK-PGIAFVEF 200
AN + APN L+I+NLP + L M LF Y P V + AK G A + +
Sbjct: 10 ANAKNVGAPNQTLYIKNLPDKIKKPDLRMALYTLFSTYGPVLDVVVLKTAKMRGQAHIVY 69
Query: 201 EDDVQSSMAMQALQGF 216
D S+ AM+ALQGF
Sbjct: 70 RDIQASTQAMRALQGF 85
>gi|115400914|ref|XP_001216045.1| hypothetical protein ATEG_07424 [Aspergillus terreus NIH2624]
gi|114189986|gb|EAU31686.1| hypothetical protein ATEG_07424 [Aspergillus terreus NIH2624]
Length = 188
Score = 109 bits (273), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 69/94 (73%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K++K +L+ SLY LFS YG + DVVA+KT K+RGQA +VF +V A++
Sbjct: 20 PNQTLYCTNLPDKLRKYDLRLSLYTLFSTYGTVLDVVAMKTEKMRGQAHIVFKDVQASTQ 79
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+R +Q F F+ K M+I YAK SD +A+ G++
Sbjct: 80 AMRALQGFEFFGKQMKIVYAKGTSDVIARLRGTY 113
>gi|150863938|ref|XP_001382592.2| hypothetical protein PICST_40739 [Scheffersomyces stipitis CBS
6054]
gi|149385194|gb|ABN64563.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 220
Score = 109 bits (273), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 69/231 (29%), Positives = 122/231 (52%), Gaps = 22/231 (9%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
P TIY+ NLN+K+ ++L++SL +F+++G I + A K K++GQA++ F +A+
Sbjct: 6 PHINTIYVHNLNDKVSLKKLRQSLDEIFNKFGTIIQITAHKNLKMKGQAFITFETAESAA 65
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDC----VAKEDGSFVPREKKKKQEEKAERKRRAEE 122
A+ ++QN ++KP++IQYAK+ SD VA + P E +K+ + K + K+R
Sbjct: 66 KALVKLQNHQLFNKPIKIQYAKTNSDNYFTQVANDPK---PIETRKELKAKQQTKKR--- 119
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
T +S + + PN IL +QNL + L F+Q+ G
Sbjct: 120 ---------TADESEQKPQKKKIKIDDWKKLPPNKILLLQNLSGSVDQTKLSSYFEQFAG 170
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ--NPMAITFAKK 231
F R+++A+ ++FVEFE+D S+ + + + + +T+AKK
Sbjct: 171 FVTARLVKAR-NLSFVEFENDSASTECISKVDSVVLKENFGDEAFLTYAKK 220
>gi|448119242|ref|XP_004203684.1| Piso0_000700 [Millerozyma farinosa CBS 7064]
gi|359384552|emb|CCE78087.1| Piso0_000700 [Millerozyma farinosa CBS 7064]
Length = 218
Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 74/239 (30%), Positives = 125/239 (52%), Gaps = 30/239 (12%)
Query: 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61
+T DI +T+Y++NLN++I +LK +L F YGRI + A K K++GQA++ F
Sbjct: 1 MTQDI---ETVYVRNLNDRISLNKLKPALEEKFQAYGRILQLTAHKNLKMKGQAFITFES 57
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDC----VAKEDGSFVPREKKKKQEEKAERK 117
++ AV + +N + KPM++ +AKS SD V + +G ERK
Sbjct: 58 SESSKRAVEEAKNIVLFGKPMQVTFAKSNSDNFYLQVEQNEGPV------------QERK 105
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
R E + A+ T + + AS ++ + + PN IL +QNL ++TTS L F
Sbjct: 106 RHKAELSEKETASNTKP-TKVASKASTKDFQSWKNIPPNKILLLQNLKNDTTSQELNEYF 164
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQA-----LQGFKITPQNPMAITFAKK 231
Y GF +R+++ + + FVEFE++ S+ ++ L+ F + + +T+AKK
Sbjct: 165 DAYDGFINLRLVKIR-NLCFVEFENESASTKCLETGDYERLKSFG----DNIILTYAKK 218
>gi|85112108|ref|XP_964275.1| hypothetical protein NCU02780 [Neurospora crassa OR74A]
gi|28926050|gb|EAA35039.1| conserved hypothetical protein [Neurospora crassa OR74A]
gi|336465439|gb|EGO53679.1| hypothetical protein NEUTE1DRAFT_126932 [Neurospora tetrasperma
FGSC 2508]
gi|350295272|gb|EGZ76249.1| RNA-binding domain-containing protein [Neurospora tetrasperma FGSC
2509]
Length = 198
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 48/98 (48%), Positives = 71/98 (72%), Gaps = 1/98 (1%)
Query: 7 PPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
PPNQT+Y+ NL + KI+K++L+ +LY LFS YG + DVVALKT K+RGQA +V+ ++ A
Sbjct: 19 PPNQTLYVTNLPSAKIQKDDLRTALYMLFSTYGPVLDVVALKTMKMRGQAHIVYRDIQTA 78
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVP 103
+ A+R + F + M+I YAK +S+ +AK DG+ VP
Sbjct: 79 TQAMRSLDGMEFLGRKMKITYAKGRSNIIAKLDGTLVP 116
>gi|346320333|gb|EGX89934.1| Nucleotide-binding, alpha-beta plait [Cordyceps militaris CM01]
Length = 201
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 54/111 (48%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
IPPNQTIYI NL + KI+K++L+ +LY LFS +G + D+VALKT +RGQA +VF ++ A
Sbjct: 22 IPPNQTIYITNLPSAKIQKDDLRTALYMLFSTFGPVLDIVALKTMSMRGQAHIVFRDIQA 81
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE 115
A+ A+R + F + M+IQYAKSKS V+K DG+ K E+ E
Sbjct: 82 ATQAMRTLDGEEFLGRAMKIQYAKSKSHFVSKIDGTLTLPTKGAAAPEQTE 132
>gi|402078113|gb|EJT73462.1| U2 small nuclear ribonucleoprotein B [Gaeumannomyces graminis var.
tritici R3-111a-1]
Length = 198
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 76/98 (77%), Gaps = 2/98 (2%)
Query: 6 IPPNQTIYIKNL--NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+ PNQT+Y++++ + ++K++++ +LY LFS YG + DVVALKT K+RGQA +VF ++
Sbjct: 21 VAPNQTLYVRDIPSSRGLQKQDMRMALYMLFSTYGPVLDVVALKTSKMRGQAHIVFRDIH 80
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A++ A+R +Q+F F+ ++I+YAK+KS+ VAK DG+F
Sbjct: 81 ASTQAMRSLQDFDFFGSKLKIEYAKTKSNTVAKLDGTF 118
>gi|358400597|gb|EHK49923.1| hypothetical protein TRIATDRAFT_297311 [Trichoderma atroviride IMI
206040]
Length = 198
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/97 (52%), Positives = 72/97 (74%), Gaps = 1/97 (1%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
IPPNQT+Y+ NL + KI+K +L+ +LY LFS +G + D+VALKT ++RGQA +VF ++ A
Sbjct: 25 IPPNQTLYVTNLPSGKIQKADLRTALYMLFSTFGPVLDIVALKTMEMRGQAHIVFRDIQA 84
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+ A+R + F + M+IQYAKSKS VAK DG+F
Sbjct: 85 ATQAMRSLDGQSFLGRTMKIQYAKSKSHFVAKLDGTF 121
>gi|346978290|gb|EGY21742.1| U2 small nuclear ribonucleoprotein B [Verticillium dahliae VdLs.17]
Length = 194
Score = 109 bits (272), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 51/108 (47%), Positives = 76/108 (70%), Gaps = 2/108 (1%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
I PNQT+Y+ NL + KI+K +L+ LY LFS YG + D+VA+KT K+RGQA + + ++
Sbjct: 23 IAPNQTLYVTNLPSAKIQKPDLRTELYLLFSTYGPVLDIVAMKTMKMRGQAHITYRDIQT 82
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF-VPREKKKKQE 111
A+ A+R ++ F F +P+RIQYAKSKSD +A+ D +F +P+ K E
Sbjct: 83 ATQAMRSLEGFEFLGRPLRIQYAKSKSDFIARLDPNFELPKTGAAKVE 130
>gi|239611716|gb|EEQ88703.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
ER-3]
Length = 190
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 68/94 (72%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+T+Y NL +K+KK +L+ +LY LFS YG + DVVA+KT K+RGQA VVF ++ A++
Sbjct: 15 PNRTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVVFRDIQASTQ 74
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+R +Q F F+ K M+I Y K SD +AK G++
Sbjct: 75 AMRALQGFEFFGKEMKIAYGKGSSDIIAKLRGTY 108
>gi|261201324|ref|XP_002627062.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
SLH14081]
gi|239592121|gb|EEQ74702.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
SLH14081]
Length = 190
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 68/94 (72%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+T+Y NL +K+KK +L+ +LY LFS YG + DVVA+KT K+RGQA VVF ++ A++
Sbjct: 15 PNRTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVVFRDIQASTQ 74
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+R +Q F F+ K M+I Y K SD +AK G++
Sbjct: 75 AMRALQGFEFFGKEMKIAYGKGSSDIIAKLRGTY 108
>gi|453082261|gb|EMF10309.1| RNA-binding domain-containing protein [Mycosphaerella populorum
SO2202]
Length = 235
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/96 (46%), Positives = 70/96 (72%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPP+Q++Y++NL EK++K +LKR+LY LFS YG + DV A+KT K+RGQA V+F + A
Sbjct: 14 IPPSQSLYLQNLPEKLQKHDLKRNLYMLFSTYGPVLDVTAVKTSKMRGQAHVLFRDANTA 73
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+ A+R Q F+ + +++ YAK++S +AK G+F
Sbjct: 74 TQAMRHTQGMDFFGRELKVTYAKTRSQTLAKLTGTF 109
>gi|400603369|gb|EJP70967.1| RNA recognition domain-containing protein [Beauveria bassiana ARSEF
2860]
Length = 200
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 52/111 (46%), Positives = 75/111 (67%), Gaps = 1/111 (0%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
IPPNQT+Y+ NL + KI+K++L+ +LY LFS +G + D+VALKT +RGQA +VF ++ A
Sbjct: 22 IPPNQTLYVTNLPSAKIQKDDLRTALYMLFSTFGPVLDIVALKTMAMRGQAHIVFRDIQA 81
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE 115
A+ A+R + F + M+IQYAKSKS ++K DGS K E+ E
Sbjct: 82 ATQAMRTLDGDEFLGRSMKIQYAKSKSHFISKIDGSLALPAKGAAAAEQTE 132
>gi|315045578|ref|XP_003172164.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
gi|311342550|gb|EFR01753.1| U1 small nuclear ribonucleoprotein A [Arthroderma gypseum CBS
118893]
Length = 186
Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 49/103 (47%), Positives = 70/103 (67%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +KIKK +L+ +LY LFS YG + DVVA+++ +RGQA +VF +V ++
Sbjct: 13 PNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTSTQ 72
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ 110
A+R +Q F F+ K M+I YAK SD +AK G+F P + Q
Sbjct: 73 AMRALQGFDFFGKEMKIVYAKGNSDIIAKLRGTFNPSGMNEDQ 115
Score = 38.1 bits (87), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 29/84 (34%), Positives = 40/84 (47%), Gaps = 7/84 (8%)
Query: 153 AAPNNILFIQNLPHETTS----SMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQS 206
APN L+ NLP + + L LF Y +V + +K G A + F D S
Sbjct: 11 GAPNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTS 70
Query: 207 SMAMQALQGFKITPQNPMAITFAK 230
+ AM+ALQGF + M I +AK
Sbjct: 71 TQAMRALQGFDFFGKE-MKIVYAK 93
>gi|389631617|ref|XP_003713461.1| U2 small nuclear ribonucleoprotein B [Magnaporthe oryzae 70-15]
gi|351645794|gb|EHA53654.1| U2 small nuclear ribonucleoprotein B [Magnaporthe oryzae 70-15]
gi|440463696|gb|ELQ33250.1| U2 small nuclear ribonucleoprotein B [Magnaporthe oryzae Y34]
gi|440481885|gb|ELQ62421.1| U2 small nuclear ribonucleoprotein B [Magnaporthe oryzae P131]
Length = 207
Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 45/98 (45%), Positives = 74/98 (75%), Gaps = 2/98 (2%)
Query: 6 IPPNQTIYIKNL--NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
IPPNQT+Y++N+ ++ +K++++ +LY LFS YG + DVV LKT K+RGQA +VF ++
Sbjct: 24 IPPNQTLYVRNIRSDKGYQKQDMRTALYMLFSTYGPLLDVVVLKTMKMRGQAHIVFRDIH 83
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A++ A+R + F F+ ++I+YAK+KS+ +AK DG+F
Sbjct: 84 ASTQAMRSLDGFDFFGSKLKIEYAKTKSNTIAKLDGTF 121
>gi|326472762|gb|EGD96771.1| U1 small nuclear ribonucleoprotein A [Trichophyton tonsurans CBS
112818]
Length = 186
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 70/103 (67%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +KIKK +L+ +LY LFS YG + DVVA+++ +RGQA +VF +V ++
Sbjct: 13 PNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTSTQ 72
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ 110
A+R +Q F F+ K M+I YAK SD +AK G++ P + Q
Sbjct: 73 AMRALQGFDFFGKEMKIVYAKGNSDIIAKLRGTYNPSGPNEDQ 115
Score = 38.1 bits (87), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 147 ANTQET--AAPNNILFIQNLPHETTS----SMLEMLFQQYPGFKEVRMIEAKP--GIAFV 198
+NT T APN L+ NLP + + L LF Y +V + +K G A +
Sbjct: 3 SNTAPTNVGAPNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHI 62
Query: 199 EFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
F D S+ AM+ALQGF + M I +AK
Sbjct: 63 VFRDVQTSTQAMRALQGFDFFGKE-MKIVYAK 93
>gi|326484964|gb|EGE08974.1| U1 small nuclear ribonucleoprotein A [Trichophyton equinum CBS
127.97]
Length = 186
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 70/103 (67%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +KIKK +L+ +LY LFS YG + DVVA+++ +RGQA +VF +V ++
Sbjct: 13 PNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTSTQ 72
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ 110
A+R +Q F F+ K M+I YAK SD +AK G++ P + Q
Sbjct: 73 AMRALQGFDFFGKEMKIVYAKGNSDIIAKLRGTYNPSGPNEDQ 115
Score = 38.1 bits (87), Expect = 2.8, Method: Compositional matrix adjust.
Identities = 32/92 (34%), Positives = 44/92 (47%), Gaps = 9/92 (9%)
Query: 147 ANTQET--AAPNNILFIQNLPHETTS----SMLEMLFQQYPGFKEVRMIEAKP--GIAFV 198
+NT T APN L+ NLP + + L LF Y +V + +K G A +
Sbjct: 3 SNTAPTNVGAPNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHI 62
Query: 199 EFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
F D S+ AM+ALQGF + M I +AK
Sbjct: 63 VFRDVQTSTQAMRALQGFDFFGKE-MKIVYAK 93
>gi|327304471|ref|XP_003236927.1| RNA binding domain-containing protein [Trichophyton rubrum CBS
118892]
gi|326459925|gb|EGD85378.1| RNA binding domain-containing protein [Trichophyton rubrum CBS
118892]
Length = 186
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 70/103 (67%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +KIKK +L+ +LY LFS YG + DVVA+++ +RGQA +VF +V ++
Sbjct: 13 PNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTSTQ 72
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ 110
A+R +Q F F+ K M+I YAK SD +AK G++ P + Q
Sbjct: 73 AMRALQGFDFFGKEMKIVYAKGNSDIIAKLRGTYNPSGPSEDQ 115
Score = 37.7 bits (86), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 146 NANTQETAAPNNILFIQNLPHETTS----SMLEMLFQQYPGFKEVRMIEAKP--GIAFVE 199
N APN L+ NLP + + L LF Y +V + +K G A +
Sbjct: 4 NTAPANVGAPNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIV 63
Query: 200 FEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
F D S+ AM+ALQGF + M I +AK
Sbjct: 64 FRDVQTSTQAMRALQGFDFFGKE-MKIVYAK 93
>gi|395818968|ref|XP_003782878.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Otolemur garnettii]
Length = 200
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 78/227 (34%), Positives = 116/227 (51%), Gaps = 30/227 (13%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
I PN IYI ++ + KE K+ + LFSQ+G + D V LKT ++ GQ +VVF ++ ++
Sbjct: 3 IRPNHAIYIYYVDGXVNKEGCKKFPHTLFSQFGYMVDTVVLKTVRMTGQTFVVFKKLGSS 62
Query: 66 SNAVRQMQNF-PFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
SNA+RQ+Q+F ++ + S V K G+F +EK K + + Q
Sbjct: 63 SNALRQLQDFLSLVNQCTPVWKTDSY---VTKTCGTFAGKEKNKMKTVE----------Q 109
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
++ AN ++ +G PN ILF NL ET MLF + FK
Sbjct: 110 IAATANRKPSKPDG-----------VSDYPPNYILFFINLLAETNEM---MLFNPFTSFK 155
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+V ++ + GIAF E+D + A +ALQGFKIT + M IT A K
Sbjct: 156 KVCLVPGRHGIAFA--ENDKXAGAAREALQGFKITLSHAMKITCANK 200
>gi|225680763|gb|EEH19047.1| U1 small nuclear ribonucleoprotein A [Paracoccidioides brasiliensis
Pb03]
Length = 197
Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 68/94 (72%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K+KK +L+ +LY LFS YG + DVVA+KT K+RGQA VVF ++ A++
Sbjct: 15 PNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVVFRDIQASTQ 74
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+R +Q F F+ K M+I Y K S+ +AK G++
Sbjct: 75 AMRALQGFEFFGKEMKIVYGKGSSNIIAKLRGTY 108
>gi|295672938|ref|XP_002797015.1| RNA binding domain-containing protein [Paracoccidioides sp.
'lutzii' Pb01]
gi|226282387|gb|EEH37953.1| RNA binding domain-containing protein [Paracoccidioides sp.
'lutzii' Pb01]
Length = 197
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 68/94 (72%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K+KK +L+ +LY LFS YG + DVVA+KT K+RGQA VVF ++ A++
Sbjct: 15 PNQTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVVFRDIQASTQ 74
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+R +Q F F+ K M+I Y K S+ +AK G++
Sbjct: 75 AMRALQGFEFFGKEMKIVYGKGSSNIIAKLRGTY 108
>gi|296805295|ref|XP_002843472.1| U1 small nuclear ribonucleoprotein A [Arthroderma otae CBS 113480]
gi|238844774|gb|EEQ34436.1| U1 small nuclear ribonucleoprotein A [Arthroderma otae CBS 113480]
Length = 186
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 68/96 (70%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K+KK +L+ +LY LFS YG + DVVA+++ +RGQA VVF +V ++
Sbjct: 13 PNQTLYCTNLPDKLKKPDLRTALYTLFSTYGVVLDVVAMRSKGMRGQAHVVFRDVQTSTQ 72
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVP 103
A+R +Q F F+ K M+I YAK SD VAK G++ P
Sbjct: 73 AMRALQGFDFFGKEMKIVYAKGNSDIVAKLRGTYNP 108
>gi|190345771|gb|EDK37715.2| hypothetical protein PGUG_01813 [Meyerozyma guilliermondii ATCC
6260]
Length = 220
Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 68/230 (29%), Positives = 125/230 (54%), Gaps = 19/230 (8%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
+T+YI+NLNEK+ L+RSL +F+++G + + A K K++GQA+V F+ + ++ A+
Sbjct: 2 ETLYIRNLNEKVSVNTLRRSLESIFAKFGEVLQITANKNIKMKGQAFVTFANKSQSAAAM 61
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMA 129
++Q++ + KP+ I YAK S D F+ KK E E+++ + ++S+ A
Sbjct: 62 EKLQSYELFQKPIEISYAKKNS------DQYFIAV---KKDTETVEKRKNEKAKRESTSA 112
Query: 130 NGTGAQSNGGTAASF-------RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPG 182
N Q++ A+ ++ PNN+L +QN + ++ +L+ F +PG
Sbjct: 113 NKRKVQNDEPDFAAAPEPIKKKIKIEDWKSLPPNNVLLLQNTTVD-SNDVLQAFFGSFPG 171
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI-TFAKK 231
F R ++A ++F+EFE + S+ +Q I+ P A+ T+AKK
Sbjct: 172 FINTRFVKA-LNLSFIEFESEELSTKCLQGTTKEDISKLGPEAVLTYAKK 220
>gi|425868370|gb|AFY04317.1| sans fille, partial [Mengenilla sp. BMW-2012]
Length = 130
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 64/135 (47%), Positives = 82/135 (60%), Gaps = 12/135 (8%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V+F E+ +A+NA+R MQ FPFYDKPMRI Y+K+ SD +AK G+F R KK K
Sbjct: 1 KMRGQAFVIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPK 60
Query: 110 QEEKA-------ERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQ 162
+ A +KR E+A+Q M GA + G NA E PN ILF+
Sbjct: 61 RVVPAADEEAKKAKKRAKEQAKQQQMGYTPGAAQHTG----LTNAAVPE-QPPNQILFLT 115
Query: 163 NLPHETTSSMLEMLF 177
NLP ET+ ML MLF
Sbjct: 116 NLPDETSEMMLSMLF 130
>gi|336265527|ref|XP_003347534.1| hypothetical protein SMAC_04840 [Sordaria macrospora k-hell]
gi|380096401|emb|CCC06449.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 257
Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 47/97 (48%), Positives = 70/97 (72%), Gaps = 1/97 (1%)
Query: 8 PNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PNQT+Y+ NL + KI+K++L+ +LY LFS YG + DVVALKT K+RGQA +V+ ++ A+
Sbjct: 80 PNQTLYVANLPSAKIQKDDLRTALYMLFSTYGPVLDVVALKTMKMRGQAHIVYRDIQTAT 139
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVP 103
A+R + F + M+I YAK +S+ +AK DG+ VP
Sbjct: 140 QAMRSLDGMEFLGRQMKITYAKGRSNIIAKLDGTLVP 176
>gi|169769585|ref|XP_001819262.1| RNA binding domain protein [Aspergillus oryzae RIB40]
gi|83767121|dbj|BAE57260.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391863485|gb|EIT72793.1| spliceosomal protein snRNP-U1A/U2B [Aspergillus oryzae 3.042]
Length = 193
Score = 107 bits (266), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 47/94 (50%), Positives = 68/94 (72%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K+ K +L+ SLY LFS YG + DVVA+KT ++RGQA +VF +V A++
Sbjct: 23 PNQTLYCANLPDKLPKYDLRLSLYMLFSTYGTVLDVVAMKTKRMRGQAHIVFKDVQASTQ 82
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+R +Q F F+ K ++I YAK SD +AK G++
Sbjct: 83 AMRALQGFEFFGKQLKIVYAKGTSDVIAKLRGAY 116
>gi|302501506|ref|XP_003012745.1| hypothetical protein ARB_00996 [Arthroderma benhamiae CBS 112371]
gi|291176305|gb|EFE32105.1| hypothetical protein ARB_00996 [Arthroderma benhamiae CBS 112371]
Length = 248
Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 48/103 (46%), Positives = 70/103 (67%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +KIKK +L+ +LY LFS YG + DVVA+++ +RGQA +VF +V ++
Sbjct: 75 PNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIVFRDVQTSTQ 134
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ 110
A+R +Q F F+ K M+I YAK SD +AK G++ P + Q
Sbjct: 135 AMRALQGFDFFGKEMKIVYAKGNSDIIAKLRGTYNPSGPNEDQ 177
Score = 39.7 bits (91), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 41/91 (45%), Gaps = 7/91 (7%)
Query: 146 NANTQETAAPNNILFIQNLPHET----TSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVE 199
N APN L+ NLP + + L LF Y +V + +K G A +
Sbjct: 66 NTAPTNVGAPNQTLYCTNLPDKIKKPDLRTALYTLFSTYGAVLDVVAMRSKGMRGQAHIV 125
Query: 200 FEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
F D S+ AM+ALQGF + M I +AK
Sbjct: 126 FRDVQTSTQAMRALQGFDFFGKE-MKIVYAK 155
>gi|425868409|gb|AFY04335.1| sans fille, partial [Megaselia scalaris]
Length = 113
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 78/128 (60%), Gaps = 15/128 (11%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V+F E+ +ASNA+R MQ FPFYDKPMRI Y+K+ SD VAK G+F R KK K
Sbjct: 1 KMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKTDSDVVAKLKGTFKERPKKVK 60
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
+ A +++ ++ + S+ N +AN+ PN ILF+ NLP ET
Sbjct: 61 LPKAAPEEKKDKKKKTSNADN---------------SANSTAEQPPNQILFLTNLPEETN 105
Query: 170 SSMLEMLF 177
ML MLF
Sbjct: 106 EMMLSMLF 113
>gi|840823|emb|CAA44752.1| U2-snRNP-specific b'' [Mus musculus]
Length = 123
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 64/94 (68%), Gaps = 9/94 (9%)
Query: 147 ANTQETAAPNN---------ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAF 197
ANTQ TAAPN ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAF
Sbjct: 30 ANTQGTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAF 89
Query: 198 VEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
VEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 90 VEFENDGQAGAARDALQGFKITPSHAMKITYAKK 123
>gi|148696477|gb|EDL28424.1| mCG19497, isoform CRA_a [Mus musculus]
Length = 132
Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 55/94 (58%), Positives = 64/94 (68%), Gaps = 9/94 (9%)
Query: 147 ANTQETAAPNN---------ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAF 197
ANTQ TAAPN ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAF
Sbjct: 39 ANTQGTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAF 98
Query: 198 VEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
VEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 99 VEFENDGQAGAARDALQGFKITPSHAMKITYAKK 132
>gi|241953539|ref|XP_002419491.1| U2 small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
gi|223642831|emb|CAX43086.1| U2 small nuclear ribonucleoprotein, putative [Candida dubliniensis
CD36]
Length = 225
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 75/225 (33%), Positives = 119/225 (52%), Gaps = 25/225 (11%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P QTIYI NLNEK+ +LK+ L F G+I + ALKT KL+GQA++ F ++ +A+
Sbjct: 25 PRQTIYINNLNEKVSINKLKKELQLTFDTCGKILQISALKTLKLKGQAFITFEDIPSATK 84
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+ + KPM + YAKS +D ++ D S R +E +KR+ ++
Sbjct: 85 AL-EFNKKDLLAKPMNVTYAKSDADVIS-TDESIAQR------KELRSKKRKLDKM---- 132
Query: 128 MANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVR 187
GT N R+ + PN+IL IQNL H L++ F+++ GF VR
Sbjct: 133 ---GT---KNDKQIKKLRDE--WKELPPNHILLIQNLEH---FDDLKIFFEKFAGFDNVR 181
Query: 188 MIEAKPGIAFVEFE-DDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+++ K +AF+EFE +++ S Q + I + + ++FAKK
Sbjct: 182 LVKVK-SLAFIEFENEELAKSCLDQTTEEALIQFGHDVILSFAKK 225
>gi|294953699|ref|XP_002787894.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
gi|239902918|gb|EER19690.1| U1 small nuclear ribonucleoprotein A, putative [Perkinsus marinus
ATCC 50983]
Length = 152
Score = 106 bits (264), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 48/111 (43%), Positives = 73/111 (65%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N T+Y+ NLN+KIK ++LK L+ LF+ +G I V A K+ RGQA++ F E + A+ A
Sbjct: 17 NNTLYVNNLNDKIKLDDLKPLLFELFASFGPILAVYAGKSQSRRGQAFIAFREASNAALA 76
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRR 119
++ + FPF DKP+R+ +A+ KSD VA+ DG+F PR + K A + +R
Sbjct: 77 MKTLNGFPFLDKPLRVAFARVKSDVVARADGTFKPRRRGTKTAPAAPKSKR 127
>gi|134084710|emb|CAK43367.1| unnamed protein product [Aspergillus niger]
gi|350630864|gb|EHA19236.1| hypothetical protein ASPNIDRAFT_126281 [Aspergillus niger ATCC
1015]
Length = 177
Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 50/108 (46%), Positives = 72/108 (66%), Gaps = 1/108 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN ++Y NL +K++K +L+ SLY LFS YG + DVVA+KT K+RGQA +VF +V A++
Sbjct: 4 PNCSLYCTNLPDKLRKHDLRLSLYMLFSTYGTVLDVVAMKTQKMRGQAHIVFKDVQASTQ 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF-VPREKKKKQEEKA 114
A+R +Q F F+ K M+I YAK SD +A+ G++ VP Q A
Sbjct: 64 AMRALQGFEFFGKQMKIVYAKGPSDVIARLRGTYNVPTTTSASQATGA 111
>gi|242786438|ref|XP_002480805.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
stipitatus ATCC 10500]
gi|218720952|gb|EED20371.1| U1 small nuclear ribonucleoprotein A, putative [Talaromyces
stipitatus ATCC 10500]
Length = 180
Score = 105 bits (262), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 44/95 (46%), Positives = 69/95 (72%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+YIKNL +KI+K +L+ +LY LFS YG + DVV ++T K+RGQA +V+ ++ A++
Sbjct: 21 PNQTLYIKNLPDKIRKPDLRMALYMLFSTYGPVLDVVVMRTAKMRGQAHIVYRDIQASTQ 80
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+R +Q F F+ + + I YAK S +AK G+++
Sbjct: 81 AMRALQGFDFFGRELAIVYAKGSSHVIAKLRGTYM 115
Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 35/90 (38%), Positives = 46/90 (51%), Gaps = 7/90 (7%)
Query: 147 ANTQETAAPNNILFIQNLPHETTSSMLE----MLFQQY-PGFKEVRMIEAK-PGIAFVEF 200
AN + APN L+I+NLP + L MLF Y P V M AK G A + +
Sbjct: 13 ANAKNVGAPNQTLYIKNLPDKIRKPDLRMALYMLFSTYGPVLDVVVMRTAKMRGQAHIVY 72
Query: 201 EDDVQSSMAMQALQGFKITPQNPMAITFAK 230
D S+ AM+ALQGF + +AI +AK
Sbjct: 73 RDIQASTQAMRALQGFDFFGRE-LAIVYAK 101
>gi|255938712|ref|XP_002560126.1| Pc14g01320 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211584747|emb|CAP74273.1| Pc14g01320 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 188
Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 48/96 (50%), Positives = 70/96 (72%), Gaps = 1/96 (1%)
Query: 8 PNQTIYIKNLNEK-IKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PNQT+Y NL +K I+K +L+ +LY LFS YG + DVVA+KT K+RGQA +VF +V A++
Sbjct: 22 PNQTLYCTNLPDKRIQKNDLRTALYSLFSTYGTVLDVVAMKTSKMRGQAHIVFKDVQAST 81
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+R +Q F F+ K M+I YAK S+ ++K G++V
Sbjct: 82 QALRALQGFEFFGKQMKIVYAKGSSNVISKLRGTYV 117
>gi|313219885|emb|CBY30800.1| unnamed protein product [Oikopleura dioica]
Length = 317
Score = 104 bits (260), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 68/98 (69%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N +IYI N++EKIK + L L +F Q+G I ++ A K ++RGQA++VF EV +A A
Sbjct: 36 NNSIYINNISEKIKIQTLLTELQAIFEQFGNILEIHAKKNLRMRGQAFIVFEEVESAQKA 95
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK 106
V MQ FPF+DK MRI +AK SD +AK+ G+FV +++
Sbjct: 96 VNSMQGFPFHDKKMRIAFAKRDSDLIAKKKGTFVEKDR 133
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG-IAFVEFEDDVQSSMAMQALQ 214
NNI+F+Q+LP E ML LF Q+ F EVRM +K G AF+E+ ++ ++ A LQ
Sbjct: 241 NNIIFVQDLPEEVDEKMLTALFNQFDNFMEVRMAPSKTGRAAFIEYTNERSAANAKDTLQ 300
Query: 215 GFKITPQNPMAITFAKK 231
GFK+TP + ITFAKK
Sbjct: 301 GFKVTPTTQLKITFAKK 317
>gi|313232389|emb|CBY24056.1| unnamed protein product [Oikopleura dioica]
Length = 317
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 47/98 (47%), Positives = 68/98 (69%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N +IYI N++EKIK + L L +F Q+G I ++ A K ++RGQA++VF EV +A A
Sbjct: 36 NNSIYINNISEKIKIQTLLTELQAIFEQFGNILEIHAKKNLRMRGQAFIVFEEVESAQKA 95
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK 106
V MQ FPF+DK MRI +AK SD +AK+ G+FV +++
Sbjct: 96 VNSMQGFPFHDKKMRIAFAKRDSDLIAKKKGTFVEKDR 133
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 50/77 (64%), Gaps = 1/77 (1%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG-IAFVEFEDDVQSSMAMQALQ 214
NNI+F+Q+LP E ML LF Q+ F EVRM +K G AF+E+ ++ ++ A LQ
Sbjct: 241 NNIIFVQDLPEEVDEKMLTALFNQFDNFMEVRMAPSKTGRAAFIEYTNERSAANAKDTLQ 300
Query: 215 GFKITPQNPMAITFAKK 231
GFK+TP + ITFAKK
Sbjct: 301 GFKVTPTTQLKITFAKK 317
>gi|149041255|gb|EDL95188.1| rCG27500, isoform CRA_a [Rattus norvegicus]
Length = 132
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 63/94 (67%), Gaps = 9/94 (9%)
Query: 147 ANTQETAAPNN---------ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAF 197
ANTQ AAPN ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAF
Sbjct: 39 ANTQGNAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAF 98
Query: 198 VEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
VEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 99 VEFENDGQAGAARDALQGFKITPSHAMKITYAKK 132
>gi|430813156|emb|CCJ29457.1| unnamed protein product [Pneumocystis jirovecii]
Length = 121
Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 45/81 (55%), Positives = 65/81 (80%)
Query: 21 IKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80
IKKE+L++SLYCLFS YG + D++ALKT K+RGQA +VF +V +A+ A+R +Q F F+ K
Sbjct: 6 IKKEDLRQSLYCLFSFYGPVLDIIALKTMKMRGQAHIVFRDVASATAAMRALQGFVFFGK 65
Query: 81 PMRIQYAKSKSDCVAKEDGSF 101
M+I+YA+ KS+ +AK DG+F
Sbjct: 66 EMKIEYARRKSNAIAKLDGTF 86
>gi|425868378|gb|AFY04321.1| sans fille, partial [Clogmia albipunctata]
Length = 116
Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 72/126 (57%), Gaps = 10/126 (7%)
Query: 52 RGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQE 111
RGQA+V+F E+ +A+NA+R MQ FPFYDKPMRIQY+K SD +AK G+F R KK
Sbjct: 1 RGQAFVIFKELGSATNALRTMQGFPFYDKPMRIQYSKVDSDVIAKLKGTFKERPKKI--- 57
Query: 112 EKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSS 171
KA + +E + N + A N N+ PN ILF+ NLP ET
Sbjct: 58 -KAPKSTNPDEKKAKKQKNASNPD------APHANNNSTAEQPPNQILFLTNLPEETNEM 110
Query: 172 MLEMLF 177
ML MLF
Sbjct: 111 MLPMLF 116
>gi|840821|emb|CAA44751.1| U2-snRNP-specific b'' [Mus musculus]
Length = 97
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 54/94 (57%), Positives = 63/94 (67%), Gaps = 9/94 (9%)
Query: 147 ANTQETAAPNN---------ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAF 197
ANTQ TAAPN ILF+ NLP ET ML ML Q+PGFKEVR++ + IAF
Sbjct: 4 ANTQGTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLLNQFPGFKEVRLVPGRHDIAF 63
Query: 198 VEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
VEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 64 VEFENDGQAGAARDALQGFKITPSHAMKITYAKK 97
>gi|50551429|ref|XP_503188.1| YALI0D23375p [Yarrowia lipolytica]
gi|49649056|emb|CAG81388.1| YALI0D23375p [Yarrowia lipolytica CLIB122]
Length = 146
Score = 103 bits (258), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 50/100 (50%), Positives = 69/100 (69%), Gaps = 1/100 (1%)
Query: 4 GDIP-PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
GD P P+ T+Y+KNL +K K +LKR LY FS YG I D+VA+K ++RGQA VVF+++
Sbjct: 24 GDEPTPSPTLYVKNLTDKCTKSDLKRYLYMRFSSYGHILDIVAMKNERMRGQAHVVFNDI 83
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+ +A+ +Q F K M I+YA+SKS +AK DGSF
Sbjct: 84 DASISALNGLQKSEFMGKEMVIEYARSKSHAIAKLDGSFT 123
>gi|19112363|ref|NP_595571.1| U2 snRNP-associated protein Msl1 (predicted) [Schizosaccharomyces
pombe 972h-]
gi|52783379|sp|Q7LL14.1|RU2B_SCHPO RecName: Full=Probable U2 small nuclear ribonucleoprotein B'';
Short=U2 snRNP B''
gi|2950496|emb|CAA17824.1| U2 snRNP-associated protein Msl1 (predicted) [Schizosaccharomyces
pombe]
Length = 111
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 66/87 (75%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
T+Y+ NLN+KI K +L+ +LY LFS YG + D+VALKTPK+RGQA VVF + +AA+ A+
Sbjct: 4 NTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAK 96
+ ++NF F+ K M+IQYA SKS + +
Sbjct: 64 KALKNFIFFGKEMKIQYAHSKSKIIER 90
>gi|344301346|gb|EGW31658.1| hypothetical protein SPAPADRAFT_140622 [Spathaspora passalidarum
NRRL Y-27907]
Length = 215
Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 63/226 (27%), Positives = 119/226 (52%), Gaps = 20/226 (8%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P +TIYI NLN+++ +LK L LF+ YG+I + A + K++GQA++ F +++
Sbjct: 8 PLETIYINNLNDRVSLTKLKSELESLFTSYGKILQITAHRNLKMKGQAFITFESKVSSTK 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+ +QN ++KPM I YAK SD + E++K ++E+ KR++ A
Sbjct: 68 AM-DLQNHILFNKPMHITYAKGNSDAYYELHNEVDKIEQRKSEKERQNLKRKSTPA---- 122
Query: 128 MANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVR 187
G + ++ PN +L IQ L + L F+Q+ GF VR
Sbjct: 123 ---------GGKQKKKKVKSEDWKSLPPNKLLLIQRLDDD---EQLTSYFEQFEGFSNVR 170
Query: 188 MIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ--NPMAITFAKK 231
+++ + +AF+EF++ S+ +++++ ++ + + + ++FAKK
Sbjct: 171 LVKVRK-LAFIEFDNVESSTKCLKSIKTEELQEKFGSEVILSFAKK 215
>gi|327348269|gb|EGE77126.1| RNA binding domain-containing protein [Ajellomyces dermatitidis
ATCC 18188]
Length = 196
Score = 103 bits (257), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 48/100 (48%), Positives = 68/100 (68%), Gaps = 6/100 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+T+Y NL +K+KK +L+ +LY LFS YG + DVVA+KT K+RGQA VVF ++ A++
Sbjct: 15 PNRTLYCTNLPDKLKKPDLRLALYTLFSTYGTVLDVVAMKTAKMRGQAHVVFRDIQASTQ 74
Query: 68 AVRQMQNFPFYDKPMR------IQYAKSKSDCVAKEDGSF 101
A+R +Q F F+ K MR I Y K SD +AK G++
Sbjct: 75 AMRALQGFEFFGKEMRHWDEQKIAYGKGSSDIIAKLRGTY 114
>gi|351712556|gb|EHB15475.1| U2 small nuclear ribonucleoprotein B'' [Heterocephalus glaber]
Length = 143
Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 67/151 (44%), Positives = 89/151 (58%), Gaps = 9/151 (5%)
Query: 82 MRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTA 141
MRIQYAK+ SD ++K G+F +EKKK++++ ++ A A + GT G A
Sbjct: 1 MRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTANKKP-GQGTSTTDTQGNA 59
Query: 142 ASFRNANTQ-ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEF 200
N Q P ILF+ NLP ET ML F Q+PGFKE+ ++ + IAFVEF
Sbjct: 60 TP----NPQVPDYPPKYILFLNNLPEETNEVML---FNQFPGFKEIHLVPGRHDIAFVEF 112
Query: 201 EDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
E+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 113 ENDGQAGAARDALQGFKITPSHAMKITYAKK 143
>gi|425770060|gb|EKV08535.1| U1 small nuclear ribonucleoprotein A, putative [Penicillium
digitatum Pd1]
gi|425771753|gb|EKV10190.1| U1 small nuclear ribonucleoprotein A, putative [Penicillium
digitatum PHI26]
Length = 188
Score = 103 bits (256), Expect = 8e-20, Method: Compositional matrix adjust.
Identities = 46/96 (47%), Positives = 69/96 (71%), Gaps = 1/96 (1%)
Query: 8 PNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PNQT+Y NL + +I+K +L+ +LY LFS YG + DVV +KT K+RGQA +VF +V A++
Sbjct: 22 PNQTLYCTNLPDRRIQKNDLRTALYALFSTYGTVLDVVTMKTVKMRGQAHIVFKDVQAST 81
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+R +Q F F+ K M+I YAK S+ ++K G++V
Sbjct: 82 QALRALQGFEFFGKQMKIVYAKGSSNVISKLRGTYV 117
>gi|425868416|gb|AFY04338.1| sans fille, partial [Physocephala marginata]
Length = 116
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 73/128 (57%), Gaps = 12/128 (9%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+VVF E+++ASNA+R MQ FPFYDKPMRI YAK+ SD VAK G+F
Sbjct: 1 KMRGQAFVVFKEISSASNALRTMQGFPFYDKPMRIAYAKTDSDIVAKIKGTF-------- 52
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
ER ++ + + + + A + N+Q PN ILF+ NLP ET
Sbjct: 53 ----KERPKKVKPPKAPQVTEEKKDKKKKAANAENTHPNSQTEQPPNQILFLTNLPEETN 108
Query: 170 SSMLEMLF 177
ML MLF
Sbjct: 109 EMMLSMLF 116
>gi|2257544|dbj|BAA21437.1| spliceosomal protein [Schizosaccharomyces pombe]
Length = 216
Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 66/87 (75%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
T+Y+ NLN+KI K +L+ +LY LFS YG + D+VALKTPK+RGQA VVF + +AA+ A+
Sbjct: 4 NTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAK 96
+ ++NF F+ K M+IQYA SKS + +
Sbjct: 64 KALKNFIFFGKEMKIQYAHSKSKIIER 90
>gi|409079971|gb|EKM80332.1| hypothetical protein AGABI1DRAFT_73428, partial [Agaricus bisporus
var. burnettii JB137-S8]
Length = 160
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 52/98 (53%), Positives = 74/98 (75%), Gaps = 1/98 (1%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PP+ T+Y+ NLN+ + KEEL+ LY LF+ +G+I D+VA KT K+RGQA++VF+++ AA+
Sbjct: 4 PPSPTLYLNNLNDHVNKEELRTQLYALFTTHGKIIDIVASKTQKMRGQAFLVFADLAAAT 63
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKS-DCVAKEDGSFVP 103
A+R + FYDKP+RI YAKSKS + KED +FVP
Sbjct: 64 AAMRACEGMIFYDKPLRIDYAKSKSYATLRKEDPNFVP 101
>gi|355721048|gb|AES07135.1| small nuclear ribonucleoprotein polypeptide B [Mustela putorius
furo]
Length = 99
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 57/77 (74%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEFE+D Q+ A ALQ
Sbjct: 23 PNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQ 82
Query: 215 GFKITPQNPMAITFAKK 231
GFKITP + M IT+AKK
Sbjct: 83 GFKITPSHAMKITYAKK 99
>gi|297716585|ref|XP_002834591.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like, partial
[Pongo abelii]
Length = 99
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 57/77 (74%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEFE+D Q+ A ALQ
Sbjct: 23 PNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQ 82
Query: 215 GFKITPQNPMAITFAKK 231
GFKITP + M IT+AKK
Sbjct: 83 GFKITPSHAMKITYAKK 99
>gi|425868411|gb|AFY04336.1| sans fille, partial [Ceratitis capitata]
Length = 116
Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 77/128 (60%), Gaps = 12/128 (9%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+ GQA+V+F E+ +ASNA+R MQ FPFYDKPMRI Y+K+ SD VAK G+F K++
Sbjct: 1 KMXGQAFVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKTDSDIVAKIKGTF----KERP 56
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
++ K + + E ++ + A++ N NTQ PN ILF+ NLP ET
Sbjct: 57 KKVKPPKPVQNTEDKKDKKKKSSNAENT--------NPNTQTEQPPNQILFLTNLPQETN 108
Query: 170 SSMLEMLF 177
ML MLF
Sbjct: 109 EMMLSMLF 116
>gi|171696032|ref|XP_001912940.1| hypothetical protein [Podospora anserina S mat+]
gi|170948258|emb|CAP60422.1| unnamed protein product [Podospora anserina S mat+]
Length = 193
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 47/99 (47%), Positives = 70/99 (70%), Gaps = 7/99 (7%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
+PPNQT+Y+ NL + KI+KE+L+ +LY LFS YG + DVVALKT K+RGQA +V+ ++
Sbjct: 17 VPPNQTLYVTNLPSNKIQKEDLRTALYMLFSTYGAVLDVVALKTMKMRGQAHIVYKDIQT 76
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVP 103
A+ A+R + F F+ + + SKS+ +AK DG+F P
Sbjct: 77 ATQAMRSLNGFEFFGREL------SKSNIIAKLDGTFKP 109
>gi|238499763|ref|XP_002381116.1| small nuclear ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
gi|220692869|gb|EED49215.1| small nuclear ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
Length = 327
Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/123 (39%), Positives = 79/123 (64%), Gaps = 7/123 (5%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
IPPN T+Y++NL E++K ++LK +L +FS+YG + D+VA K +GQA++VF V +A
Sbjct: 11 IPPNSTVYVRNLEERVKVDQLKEALEEIFSEYGNVIDIVAKTNLKAKGQAFIVFDSVESA 70
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
SNA+ ++ F +DKPM + +AK++SD V RE + + E +R+R AE+
Sbjct: 71 SNAIDEINGFELFDKPMVLDFAKTRSDAT-------VLREGGEDELEAHKRRRLAEKGSF 123
Query: 126 SSM 128
S+
Sbjct: 124 FSL 126
>gi|425868420|gb|AFY04340.1| sans fille, partial [Thaumatomyia notata]
Length = 112
Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust.
Identities = 59/125 (47%), Positives = 74/125 (59%), Gaps = 13/125 (10%)
Query: 53 GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
GQA+V+F E+ +ASNA+R MQ FPFYDKPMRI YAKS+SD VAK G++ K+K ++
Sbjct: 1 GQAFVIFKEIGSASNALRTMQGFPFYDKPMRIAYAKSESDVVAKIKGTY----KEKPKKV 56
Query: 113 KAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSM 172
K + + EE + T A N NTQ PN ILF+ NLP ET M
Sbjct: 57 KPPKPVQVEEKKDKKKKT---------TNAENTNPNTQSEQPPNQILFLTNLPEETNEMM 107
Query: 173 LEMLF 177
L MLF
Sbjct: 108 LSMLF 112
>gi|169611634|ref|XP_001799235.1| hypothetical protein SNOG_08932 [Phaeosphaeria nodorum SN15]
gi|160702333|gb|EAT84100.2| hypothetical protein SNOG_08932 [Phaeosphaeria nodorum SN15]
Length = 204
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 64/204 (31%), Positives = 106/204 (51%), Gaps = 4/204 (1%)
Query: 26 LKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85
+K +L +F YG I D++A + K +GQA+VVF +A A+ +M F Y K +++
Sbjct: 1 MKEALTKVFQYYGPILDIIAKSSLKRKGQAFVVFDSEKSALEAIEEMSGFELYGKALKVS 60
Query: 86 YAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFR 145
AK+ SD K + + E K+K+ + + KR E+A+ + AN A S
Sbjct: 61 KAKTHSDETVKRKAAEMFEEHKRKRLMQKDFKRAEEDAK--AQANPAVTTEKPRAAKSGA 118
Query: 146 NANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQ 205
E PN +LF+QN+P + L +F ++ GFKEVR++ + +AF EFE++
Sbjct: 119 AVVPDEYVRPNKVLFLQNIPRDIDEEDLTNVFDRFEGFKEVRLVSVR-AVAFAEFENEQF 177
Query: 206 SSMAMQALQGFKITPQN-PMAITF 228
+ A +A I + PM +T+
Sbjct: 178 AITAKEATANTPIGAEGKPMKVTY 201
>gi|425868393|gb|AFY04327.1| sans fille, partial [Bombylius major]
Length = 115
Score = 100 bits (250), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 74/128 (57%), Gaps = 13/128 (10%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V+F E+ A+NA+R MQ FPFYDKPMRI YAK+ SD VA+ G+F R KK K
Sbjct: 1 KMRGQAFVIFKEIGXATNALRTMQGFPFYDKPMRIAYAKTDSDIVARIKGTFKERPKKVK 60
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
++ A + ++ ++ AN + + N PN ILF+ N P ET
Sbjct: 61 TQKPAPTE---DKKEKKKKANNVDSSA----------TNNATEXPPNQILFLTNXPEETN 107
Query: 170 SSMLEMLF 177
ML MLF
Sbjct: 108 EMMLSMLF 115
>gi|122919626|pdb|2B0G|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd2
gi|134103993|pdb|2AYM|A Chain A, Solution Structure Of Drosophila Melanogaster Snf Rbd2
Length = 83
Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF ++QS+ A +ALQ
Sbjct: 7 PNQILFLTNLPEETNEMMLSMLFNQFPGFKEVRLVPNRHDIAFVEFTTELQSNAAKEALQ 66
Query: 215 GFKITPQNPMAITFAKK 231
GFKITP + M ITFAKK
Sbjct: 67 GFKITPTHAMKITFAKK 83
>gi|425868391|gb|AFY04326.1| sans fille, partial [Asilus crabroniformis]
Length = 115
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 53/128 (41%), Positives = 74/128 (57%), Gaps = 13/128 (10%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+VVF E+ +A+NA+R MQ FPFYDKPM+I Y K+ SD VA+ G++
Sbjct: 1 KMRGQAFVVFKEIASATNALRTMQGFPFYDKPMKIAYGKTDSDVVARMKGTY-------- 52
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
+E+ ++ + + AQ +N T N+N+ PN ILF+ NLP ET
Sbjct: 53 -KERPKKIKPPKPAQSEEKKEKKKKSTNSDT----NNSNSTVEQPPNQILFLTNLPEETX 107
Query: 170 SSMLEMLF 177
ML MLF
Sbjct: 108 EMMLSMLF 115
>gi|401786831|gb|AFQ07875.1| sans fille, partial [Scaptomyza flava]
gi|401786833|gb|AFQ07876.1| sans fille, partial [Scaptomyza nigrita]
Length = 116
Score = 100 bits (249), Expect = 5e-19, Method: Compositional matrix adjust.
Identities = 57/128 (44%), Positives = 72/128 (56%), Gaps = 12/128 (9%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ ++ K+ + +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYK---ERPKKVKPPKPA 57
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
EE + S N NTQ PN ILF+ NLP ET ML MLF
Sbjct: 58 PGVEEKKDKKKKPSNAENS---------NPNTQTEQPPNQILFLTNLPEETNEMMLSMLF 108
Query: 178 QQYPGFKE 185
Q+PGFKE
Sbjct: 109 NQFPGFKE 116
>gi|388580808|gb|EIM21120.1| hypothetical protein WALSEDRAFT_69274 [Wallemia sebi CBS 633.66]
Length = 150
Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust.
Identities = 45/84 (53%), Positives = 61/84 (72%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN T+Y++NL +KI K+EL+ LY F YGRI DVVALKT KLRGQAW+VF +++A++
Sbjct: 4 PNTTLYLRNLPDKINKQELRSQLYFRFQSYGRILDVVALKTDKLRGQAWIVFDVLSSATS 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS 91
A+R FY+K + I YAK+ S
Sbjct: 64 AMRAENGSRFYNKAINIDYAKTTS 87
>gi|449513275|ref|XP_004175808.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like, partial
[Taeniopygia guttata]
Length = 99
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 51/99 (51%), Positives = 62/99 (62%)
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
GA N +A N PN ILF+ NLP ET ML MLF Q+PGFKEVR++ +
Sbjct: 1 GATQNSASAPGTTPQNQVPDNPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLVPGR 60
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
IAFVEFE++ Q+ A ALQGFKI P + M IT+AKK
Sbjct: 61 QDIAFVEFENENQAGAARDALQGFKIPPSHAMKITYAKK 99
>gi|226292456|gb|EEH47876.1| RNA binding domain-containing protein [Paracoccidioides
brasiliensis Pb18]
Length = 206
Score = 100 bits (248), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 47/103 (45%), Positives = 68/103 (66%), Gaps = 9/103 (8%)
Query: 8 PNQT---------IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVV 58
PNQT +Y NL +K+KK +L+ +LY LFS YG + DVVA+KT K+RGQA VV
Sbjct: 15 PNQTSVEIFIPRFLYCTNLPDKLKKPDLRLALYALFSTYGTVLDVVAMKTAKMRGQAHVV 74
Query: 59 FSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
F ++ A++ A+R +Q F F+ K M+I Y K S+ +AK G++
Sbjct: 75 FRDIQASTQAMRALQGFEFFGKEMKIVYGKGSSNIIAKLRGTY 117
>gi|254571559|ref|XP_002492889.1| hypothetical protein [Komagataella pastoris GS115]
gi|238032687|emb|CAY70710.1| Hypothetical protein PAS_chr3_0663 [Komagataella pastoris GS115]
gi|328353098|emb|CCA39496.1| Nucleolysin TIA-1 [Komagataella pastoris CBS 7435]
Length = 211
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 69/222 (31%), Positives = 119/222 (53%), Gaps = 14/222 (6%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+Y++NLNEK+ LK+ L LFS YG + + A K K++GQA+V +++ A +AV+
Sbjct: 3 TLYVRNLNEKVSVNTLKKKLDELFSPYGNVLAITAHKNLKMKGQAFVAYAKQENAIDAVQ 62
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMAN 130
+Q +DK + IQ A S+SD V KE K + E +KR+ E+ Q+ N
Sbjct: 63 SLQGTMLFDKQLEIQDATSQSDAVLKETLG-------KTEFEDYLKKRKVEKEQK----N 111
Query: 131 GTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIE 190
A S+ + PN +L +Q + E TS+ ++ +F ++ G KE+ +++
Sbjct: 112 RKRASSDEEPKQKTKRIKIVINNEPNKLLLLQKVDPELTSADIKSIFDKFQGLKEINLVK 171
Query: 191 AKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA-ITFAKK 231
+ +A +EF ++ + + +AL G I +N +T+AKK
Sbjct: 172 PR-NLALIEFTEESAAVICKEAL-GQTIQIKNHECYLTYAKK 211
>gi|157836397|pdb|2U1A|A Chain A, Rna Binding Domain 2 Of Human U1a Protein, Nmr, 20
Structures
Length = 88
Score = 99.8 bits (247), Expect = 8e-19, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 12 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 71
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 72 GFKITQNNAMKISFAKK 88
>gi|344257423|gb|EGW13527.1| U2 small nuclear ribonucleoprotein B'' [Cricetulus griseus]
Length = 113
Score = 99.8 bits (247), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 53/94 (56%), Positives = 61/94 (64%), Gaps = 9/94 (9%)
Query: 147 ANTQETAAPNN---------ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAF 197
ANTQ APN ILF+ NLP ET ML MLF Q+PGFKEV +I + IAF
Sbjct: 20 ANTQGNTAPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVCLIPGRHDIAF 79
Query: 198 VEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
VEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 80 VEFENDGQAGAARDALQGFKITPSHAMKITYAKK 113
>gi|425868435|gb|AFY04347.1| sans fille, partial [Exorista larvarum]
Length = 113
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 70/125 (56%), Gaps = 12/125 (9%)
Query: 53 GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
GQA+V+F E+ +ASNA+R MQ FPFYDKPMRI YAK+ SD VAK G+F
Sbjct: 1 GQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVAKIKGTF----------- 49
Query: 113 KAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSM 172
ER ++ + + + + + A N NTQ PN ILF+ NLP ET M
Sbjct: 50 -KERPKKLKPPKPVAPVEDKKDKKKKASNAENANPNTQTEQPPNQILFLTNLPEETNEMM 108
Query: 173 LEMLF 177
L MLF
Sbjct: 109 LPMLF 113
>gi|425868427|gb|AFY04343.1| sans fille, partial [Delia radicum]
Length = 114
Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 57/126 (45%), Positives = 70/126 (55%), Gaps = 12/126 (9%)
Query: 52 RGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQE 111
RGQA+V+F E+ +A+NA+R MQ FPFYDKPMRI Y+K+ SD VAK G+F +E
Sbjct: 1 RGQAFVIFKEIASAANALRTMQGFPFYDKPMRIAYSKTDSDVVAKIKGTF--------KE 52
Query: 112 EKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSS 171
+ K A + SN A N NTQ PN ILF+ NLP ET
Sbjct: 53 RPKKLKPPKPVAPVEDKKDKKKKTSNAENA----NPNTQTEQPPNQILFLTNLPEETNEM 108
Query: 172 MLEMLF 177
ML MLF
Sbjct: 109 MLPMLF 114
>gi|441653781|ref|XP_003270568.2| PREDICTED: U1 small nuclear ribonucleoprotein A [Nomascus
leucogenys]
Length = 211
Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 135 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 194
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 195 GFKITQNNAMKISFAKK 211
Score = 43.5 bits (101), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 24/88 (27%)
Query: 51 LRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ 110
+RGQA+V+F E RIQYAK+ SD +AK G+FV R++K+
Sbjct: 1 MRGQAFVIFKE---------------------RIQYAKTDSDIIAKMKGTFVERDRKR-- 37
Query: 111 EEKAERKRRAEEAQQSSMANGTGAQSNG 138
EK + K + A + ++ G A G
Sbjct: 38 -EKRKPKSQETPATKKAVQGGGAAPVVG 64
>gi|194375486|dbj|BAG56688.1| unnamed protein product [Homo sapiens]
Length = 203
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 127 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 186
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 187 GFKITQNNAMKISFAKK 203
>gi|388856009|emb|CCF50386.1| related to U2 small nuclear ribonucleoprotein B [Ustilago hordei]
Length = 249
Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust.
Identities = 66/228 (28%), Positives = 115/228 (50%), Gaps = 8/228 (3%)
Query: 8 PNQTIYIKNLNEKIKK-EELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
P+ T+Y+KN+ K+KK EL+R L+ LFS YGR+ DVVA + +RGQA++VF + ++
Sbjct: 21 PSPTLYVKNIEGKVKKPAELRRQLHSLFSTYGRVLDVVATRAHGMRGQAFIVFENPSFST 80
Query: 67 NAVRQMQNFPFYDKPMRIQYAK-SKSDCVA-KEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A R + NF FY KP+ I+Y+ SKS + KE G +E ++ E KR + A
Sbjct: 81 AAKRGLHNFSFYSKPLHIEYSSGSKSKALLRKELGYEAVQELDLEKSRTTESKRGEKRAN 140
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF- 183
Q++ + G + +E I+ N+P ++ LF + G+
Sbjct: 141 QTAPEQEEQEEEEGSGRKRVKREEDEEEED-GVIVQASNVPGSIEGEVISALFSRQSGYV 199
Query: 184 ---KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228
+ + + A + F+ + + A+++LQG +I P + ++
Sbjct: 200 GTDEGTNREDGETWTAEIRFDGEESAKAALESLQGVQIDPMYKLELSI 247
>gi|428171194|gb|EKX40113.1| hypothetical protein GUITHDRAFT_113851 [Guillardia theta CCMP2712]
Length = 336
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 72/244 (29%), Positives = 118/244 (48%), Gaps = 29/244 (11%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA- 64
+PP T+YI+NL E++K ++ LY +FSQYG+I DV ALKT K+RGQA+V F E+ A
Sbjct: 82 LPPCNTLYIRNLRERVKPRRMRELLYAVFSQYGKILDVRALKTQKMRGQAFVCFDELKAR 141
Query: 65 -------------------ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPRE 105
A +A ++ F F ++ + IQ+AKS S K+DG++
Sbjct: 142 EQLEHVQGQSMLTPCACQDAVHAKEELNGFSFLNRTLVIQFAKSPSHAHLKKDGTYSEMM 201
Query: 106 KKKKQEEKAER----KRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETA-APNNILF 160
++ + E + ++ E A +S + AQ N + + + + P+ L
Sbjct: 202 QQIRSEYWSNHSLTIRKSVETALESKANTSSVAQLNILEDDWLLSQHGYKLSKEPSRHLL 261
Query: 161 IQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFV-EFEDDVQSSMAMQALQGFKIT 219
I N P + + Q+ G V I +AF+ +E+ +S A +AL+GF
Sbjct: 262 ITNCPANIIEQDVLDVLGQFEGLISVEKISG--AVAFMAHYEEKDTASEATEALEGF-FF 318
Query: 220 PQNP 223
P+ P
Sbjct: 319 PEEP 322
>gi|378726083|gb|EHY52542.1| U2 small nuclear ribonucleoprotein B'' [Exophiala dermatitidis
NIH/UT8656]
Length = 200
Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 46/100 (46%), Positives = 64/100 (64%), Gaps = 4/100 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVAL----KTPKLRGQAWVVFSEVT 63
PNQT+Y+KNLNEKI K ELKR+LY LFS YG + D+V K +RGQA +V+ ++
Sbjct: 21 PNQTLYVKNLNEKINKNELKRALYMLFSTYGPVLDIVTTRVGSKCQNMRGQAHIVYRDIQ 80
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVP 103
++ A+R +Q F + K M I Y K +S + K G+F P
Sbjct: 81 TSTQAMRALQGFDLFGKEMVIVYGKGQSQIIPKLRGTFEP 120
>gi|119467920|ref|XP_001257766.1| RNA binding domain protein [Neosartorya fischeri NRRL 181]
gi|119405918|gb|EAW15869.1| RNA binding domain protein [Neosartorya fischeri NRRL 181]
Length = 213
Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 48/113 (42%), Positives = 69/113 (61%), Gaps = 19/113 (16%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQT+Y NL +K++K +L+ SLY LFS YG + DVVALKT K+RGQA +VF +V A++
Sbjct: 22 PNQTLYCTNLPDKLRKYDLRLSLYTLFSTYGTVLDVVALKTEKMRGQAHIVFKDVQASTQ 81
Query: 68 AVRQMQNFPFYDKPM-------------------RIQYAKSKSDCVAKEDGSF 101
A+R +Q F F+ + M +I YAK SD +A+ G++
Sbjct: 82 AMRALQGFEFFGREMVGAFGFNGLATGLNTVYFQKIVYAKGTSDVIARLRGTY 134
>gi|425868380|gb|AFY04322.1| sans fille, partial [Coboldia fuscipes]
Length = 116
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 70/127 (55%), Gaps = 11/127 (8%)
Query: 51 LRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ 110
+RGQA+V F + +ASNA+R MQ FPFYD PMRI Y+KS SD +A+ G+F R KK K
Sbjct: 1 MRGQAFVYFKXIASASNALRTMQGFPFYDXPMRIAYSKSDSDVIARMKGTFKERPKKIKL 60
Query: 111 EEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTS 170
K+ +E ++ + N G N TA PN ILF NLP ET
Sbjct: 61 -PKSTNPDDKKEKKKKNXINADGTSVNNSTAEQ----------PPNXILFXTNLPEETNE 109
Query: 171 SMLEMLF 177
ML MLF
Sbjct: 110 MMLSMLF 116
>gi|149597291|ref|XP_001509496.1| PREDICTED: U1 small nuclear ribonucleoprotein A-like
[Ornithorhynchus anatinus]
Length = 139
Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 63 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 122
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 123 GFKITQNNAMKISFAKK 139
>gi|448522653|ref|XP_003868744.1| U1A component of the U1 snRNP [Candida orthopsilosis Co 90-125]
gi|380353084|emb|CCG25840.1| U1A component of the U1 snRNP [Candida orthopsilosis]
Length = 229
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 62/213 (29%), Positives = 113/213 (53%), Gaps = 10/213 (4%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+ P QT+YI N+N+K+ ++K L L Q+ R ++ KT +L+GQA+V F + A
Sbjct: 3 VEPKQTVYINNINDKVSINKVKSVLTILLQQF-RPTNISLAKTLRLKGQAFVTFETIDDA 61
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE-KAERKRRAEEAQ 124
S A++ + N + K + + +AKS SD + D + R +K + +E K +++ +
Sbjct: 62 SKAIQSLNNQELFSKCINVTFAKSNSDTLL--DKKELKRIRKVRHDEHKIKKQPQTNSKS 119
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET--TSSMLEMLFQQYPG 182
++ + T A N S + + +T PN IL +QN+ + T ++ F+ Y G
Sbjct: 120 KTKITKSTAAGKNKTKKQSQVDVQSWKTLPPNRILLLQNISSSSLITKEAIDEYFRSYAG 179
Query: 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG 215
F+ R + A ++F+EFE++ +AM+ LQ
Sbjct: 180 FEMARFV-ATRHLSFIEFENE---DIAMECLQS 208
>gi|351707543|gb|EHB10462.1| U1 small nuclear ribonucleoprotein A [Heterocephalus glaber]
Length = 242
Score = 97.4 bits (241), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 70/197 (35%), Positives = 98/197 (49%), Gaps = 32/197 (16%)
Query: 34 FSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDC 93
++G+I D++ ++ +R QA+V + A+N + MQ FPFYDKPM IQYAK+ SD
Sbjct: 9 LKKFGQILDILVSRSLMMRNQAFV-----SNATNVLCSMQEFPFYDKPMCIQYAKTNSDI 63
Query: 94 VAKEDGSFVPRE-----KKKKQEEKAERKR--RAEEAQQSSMANGTG---AQSNGGTAAS 143
+ K G+FV + +K K +EK +R R M G Q G S
Sbjct: 64 IVKMKGTFVEWDHKWEKRKPKNQEKLLPRRLWRLPYMLPPGMIPPPGLTPGQIPPGAMPS 123
Query: 144 FRNANTQETAA-------PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG-- 194
+ Q A PN+ILF+ P ET M +LF Q+PGFK+V + KPG
Sbjct: 124 QQLMPGQMAPAQPLWDNPPNHILFLTKQPEETNELMSSLLFNQFPGFKKVCL---KPGRD 180
Query: 195 -----IAFVEFEDDVQS 206
I FVEF ++V S
Sbjct: 181 NITLYITFVEFNNEVLS 197
>gi|68478695|ref|XP_716616.1| hypothetical protein CaO19.7375 [Candida albicans SC5314]
gi|46438288|gb|EAK97621.1| hypothetical protein CaO19.7375 [Candida albicans SC5314]
gi|238880991|gb|EEQ44629.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 204
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 68/228 (29%), Positives = 114/228 (50%), Gaps = 31/228 (13%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P QTIY+ NLNEK+ +LK L F+ G+I + ALKT KL+GQA++ F ++ +A+
Sbjct: 4 PRQTIYVNNLNEKVSINKLKNELQQTFNVCGKILQISALKTLKLKGQAFITFEDIPSATK 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+ ++ + KPM + YAKS +D ++ +D AQ+
Sbjct: 64 AL-ELNKKDLFSKPMNVTYAKSDADVISTDDNI----------------------AQRKK 100
Query: 128 MANGTGAQSNGGTAASFRNANTQE---TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ + GT + ++ PN+IL IQNL L++ F+++ GF
Sbjct: 101 LRSKKRKLDKSGTKNDKQIKKLRDEWKELPPNHILLIQNLEKFDD---LKIYFEKFAGFD 157
Query: 185 EVRMIEAKPGIAFVEFE-DDVQSSMAMQALQGFKITPQNPMAITFAKK 231
VR+++ K +AF+EFE +D+ S Q + + + ++FAKK
Sbjct: 158 NVRLVKVK-NLAFIEFESEDLAKSCLDQTTEDDLKQFGHDVILSFAKK 204
>gi|425868425|gb|AFY04342.1| sans fille, partial [Cochliomyia macellaria]
Length = 113
Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust.
Identities = 58/125 (46%), Positives = 73/125 (58%), Gaps = 12/125 (9%)
Query: 53 GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
GQA+V+F E+ +ASNA+R MQ FPFYDKPMRI YAK+ SD AK G+F R KK K +
Sbjct: 1 GQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVXAKMKGTFKERPKKLKPPK 60
Query: 113 KAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSM 172
+ ++ ++ + SN A N NTQ PN ILF+ NLP ET M
Sbjct: 61 PVQPVXDKKDKKKKA--------SNAENA----NPNTQTEQPPNQILFLTNLPEETNEMM 108
Query: 173 LEMLF 177
L MLF
Sbjct: 109 LSMLF 113
>gi|425868414|gb|AFY04337.1| sans fille, partial [Drosophila melanogaster]
Length = 116
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 58/128 (45%), Positives = 75/128 (58%), Gaps = 12/128 (9%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V+F E+ +ASNA+R MQ FPFYDKPM+I Y+KS SD VAK G+F R KK K
Sbjct: 1 KMRGQAFVIFKEIGSASNALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTFKERPKKVK 60
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
+ A ++ ++ ++A N N Q PN ILF+ NLP ET
Sbjct: 61 PPKPAPGTDEKKDKKKKP------------SSAENSNPNAQTEQPPNQILFLTNLPEETN 108
Query: 170 SSMLEMLF 177
ML MLF
Sbjct: 109 EMMLSMLF 116
>gi|259016055|gb|ACV89309.1| sans fille [Platystoechotes sp. BMW-2009]
Length = 88
Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust.
Identities = 51/128 (39%), Positives = 67/128 (52%), Gaps = 42/128 (32%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V+F E+++A+N +R MQ FPFYDKPMRIQYAK SD +AK G+F R K+ K
Sbjct: 3 KMRGQAFVIFKEISSATNGIRAMQGFPFYDKPMRIQYAKKDSDIIAKLKGTFQERPKRVK 62
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
++ PN ILF+ NLP ET+
Sbjct: 63 EQ------------------------------------------PPNQILFLTNLPDETS 80
Query: 170 SSMLEMLF 177
ML+MLF
Sbjct: 81 EMMLQMLF 88
>gi|357461607|ref|XP_003601085.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
gi|355490133|gb|AES71336.1| U1 small nuclear ribonucleoprotein A [Medicago truncatula]
Length = 151
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 46/59 (77%), Positives = 49/59 (83%)
Query: 46 LKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPR 104
LK + V FSEVTAASNAVRQMQNFPFY KPMRIQYAK+KSDCVAKE+GSFVPR
Sbjct: 62 LKLDNYKCFTMVCFSEVTAASNAVRQMQNFPFYVKPMRIQYAKTKSDCVAKEEGSFVPR 120
>gi|342879725|gb|EGU80962.1| hypothetical protein FOXB_08521 [Fusarium oxysporum Fo5176]
Length = 197
Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust.
Identities = 48/97 (49%), Positives = 68/97 (70%), Gaps = 7/97 (7%)
Query: 6 IPPNQTIYIKNL-NEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
IPPNQT+Y+ NL + KI+K +L+ +LY LFS YG + DVVALKT K+RGQA +VF +V +
Sbjct: 24 IPPNQTLYVTNLPSSKIQKADLRTALYLLFSTYGPVLDVVALKTMKMRGQAHIVFRDVQS 83
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
A+ A+R ++ F + + SKS+ VAK DG+F
Sbjct: 84 ATQAMRSLEGQAFLGRDL------SKSNFVAKLDGTF 114
>gi|164658503|ref|XP_001730377.1| hypothetical protein MGL_2759 [Malassezia globosa CBS 7966]
gi|159104272|gb|EDP43163.1| hypothetical protein MGL_2759 [Malassezia globosa CBS 7966]
Length = 229
Score = 96.3 bits (238), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 43/108 (39%), Positives = 68/108 (62%), Gaps = 16/108 (14%)
Query: 8 PNQTIYIKNLNEKIKK---------------EELKRSLYCLFSQYGRIFDVVALKTPKLR 52
PN ++Y+KN+N K+KK EL+R LY LF YG++ DVVA + +R
Sbjct: 6 PNTSLYVKNINSKVKKPGMYRSAIESGTLTLAELRRQLYSLFGSYGKVLDVVATRADGMR 65
Query: 53 GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDG 99
GQA+VVF ++ +A+ A+R + F FY+KP++++YA+++S V E G
Sbjct: 66 GQAFVVFRDLQSATAALRALDGFEFYEKPLKLEYARTRSKATVVAEHG 113
>gi|425868418|gb|AFY04339.1| sans fille, partial [Minettia flaveola]
Length = 112
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 55/123 (44%), Positives = 74/123 (60%), Gaps = 12/123 (9%)
Query: 51 LRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ 110
+RGQA+VVF E+++ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G+F K++ +
Sbjct: 1 MRGQAFVVFKEISSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKIKGTF----KERPK 56
Query: 111 EEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTS 170
+ K + E ++ T A++ N N+Q PN ILF+ NLP ET
Sbjct: 57 KVKPPKAPLNVEEKKDKKKKTTNAEN--------ANPNSQTEQPPNQILFLTNLPEETNE 108
Query: 171 SML 173
ML
Sbjct: 109 MML 111
>gi|154309069|ref|XP_001553869.1| hypothetical protein BC1G_07429 [Botryotinia fuckeliana B05.10]
Length = 157
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 52/137 (37%), Positives = 76/137 (55%), Gaps = 9/137 (6%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
+G PPN T+Y+ NL E IK L +L LFS+YG I ++VA K +GQA++VF +V
Sbjct: 8 SGSPPPNATLYVNNLEESIKPAALIEALTELFSEYGTILEIVAKTNLKAKGQAFIVFEDV 67
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
+A+ A+ +Q F + K MRI YAK++SD K +G E K R+R AE+
Sbjct: 68 ESATKAIEDIQGFELFGKEMRIAYAKTRSDASVKREGGHEELEVHK-------RRRLAEK 120
Query: 123 AQQSSM--ANGTGAQSN 137
++ GA+ N
Sbjct: 121 VSLDALKALENIGAKEN 137
>gi|322792536|gb|EFZ16487.1| hypothetical protein SINV_12462 [Solenopsis invicta]
Length = 139
Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 57/127 (44%), Positives = 78/127 (61%), Gaps = 9/127 (7%)
Query: 83 RIQYAKSKSDCVAKEDGSFVPREKKKKQ-----EEKAER-KRRAEEAQQSSMANGTGAQS 136
RIQYAK+ SD +AK G+F R KK K+ +E+A+R K+RA+E Q+ + G +
Sbjct: 16 RIQYAKTDSDIIAKMKGTFAERPKKPKRVIPVADEEAKRAKKRAKE--QAKHSQQIGYHA 73
Query: 137 NGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIA 196
+ N E PN ILF+ NLP ET+ ML MLF Q+PGFKEVR++ + IA
Sbjct: 74 SVPQHPGLVNTAVPEQP-PNQILFLTNLPDETSEMMLSMLFNQFPGFKEVRLVPNRHDIA 132
Query: 197 FVEFEDD 203
FVEFE++
Sbjct: 133 FVEFENE 139
>gi|425868431|gb|AFY04345.1| sans fille, partial [Musca domestica]
Length = 115
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 54/127 (42%), Positives = 74/127 (58%), Gaps = 12/127 (9%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V+F E+ +ASNA+R MQ FPFYDKPMRI YAK+ SD VAK G+F K++
Sbjct: 1 KMRGQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVAKMKGTF----KERP 56
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
++ K + E ++ T A+++ N N Q PN ILF+ N ET
Sbjct: 57 KKVKPPKPAAPAEDKKDKKKKTTNAENS--------NPNAQSEQPPNQILFLTNATEETN 108
Query: 170 SSMLEML 176
ML +L
Sbjct: 109 EMMLSLL 115
>gi|425868405|gb|AFY04333.1| sans fille, partial [Episyrphus balteatus]
Length = 112
Score = 95.5 bits (236), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 57/125 (45%), Positives = 75/125 (60%), Gaps = 13/125 (10%)
Query: 53 GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
G A V+F E+++ASNA+R MQ FPFYDKPMRI Y+K+ SD VAK G+F K++ ++
Sbjct: 1 GXALVIFKEISSASNALRXMQGFPFYDKPMRIAYSKTDSDVVAKIKGTF----KERPKKV 56
Query: 113 KAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSM 172
K + EE + G GA++ AAS N+ PN ILF+ NLP ET M
Sbjct: 57 KPPKXPATEEKKDKKKKTG-GAEN----AAS----NSTAEQPPNQILFLTNLPEETXXMM 107
Query: 173 LEMLF 177
L MLF
Sbjct: 108 LPMLF 112
>gi|403357542|gb|EJY78399.1| U2 small nuclear ribonucleoprotein b'' [Oxytricha trifallax]
Length = 322
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 113/223 (50%), Gaps = 12/223 (5%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT---PKLRGQAWVVFSEVTAASN 67
T+Y++NLN+KIK +E+K +L+ LFSQ G + ++ T KLRGQA++VF E A
Sbjct: 106 TLYVRNLNDKIKTDEMKITLFHLFSQVGEVIEINMRNTNNSQKLRGQAFIVFREQDMADR 165
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
+++++ F + K + IQYAK SD K G F + + + +RK++ E ++
Sbjct: 166 GLQELKGFNLFGKSIDIQYAKQNSDVTLKNKGVF---DDSIRLNRRQKRKQKDELKRKEK 222
Query: 128 MANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVR 187
A+ +++ +++ N + I NLP +L+ L + YPG +
Sbjct: 223 KEKLVIAEQQLKQQLNYKEMALKQS----NAIAIDNLPGNYNQLLLQELLRNYPGVADYN 278
Query: 188 MIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNP-MAITFA 229
+ + + +A V F + +A+ L ++I + + +TF
Sbjct: 279 L-DVEKHVATVHFHTSNDAKVALAGLNQYQIDSEGTQLRVTFV 320
>gi|406603206|emb|CCH45243.1| U1 small nuclear ribonucleoprotein [Wickerhamomyces ciferrii]
Length = 232
Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 63/227 (27%), Positives = 112/227 (49%), Gaps = 30/227 (13%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
++YI+N+NEK+ +K L +F YG I + A K K+RGQA+V A A++
Sbjct: 30 SVYIRNINEKVSINTIKSKLTEIFDNYGPIQSITAHKNVKMRGQAFVSLESEEKAQQAIK 89
Query: 71 QMQNFPFYDKPMRIQYAKS------KSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++ ++K + + +AKS ++ V K+ ++ K+K +E+ ++K+ E +
Sbjct: 90 ELNGTQLFEKKIEVSFAKSSSNSSVENKLVEKDYNEYL--NKRKLHKEELDKKKEQEPVK 147
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ + E PN IL +Q LP + T L +F++Y GF
Sbjct: 148 KPKIK--------------------IENLPPNKILLVQGLPKDVTQDELVEIFEKYNGFV 187
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + G+AF+E+E+D + A + I P+ + FAKK
Sbjct: 188 EVRLVAVR-GVAFIEYENDKDAIPAKEGTADLTIKDTKPI-VNFAKK 232
>gi|344250483|gb|EGW06587.1| U1 small nuclear ribonucleoprotein A [Cricetulus griseus]
Length = 104
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 56/77 (72%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q PGFKEV ++ + IAFVEF+++VQ+ A ALQ
Sbjct: 28 PNHILFLTNLPEETNKLMLSMLFNQCPGFKEVHLVPGQHDIAFVEFDNEVQAGAAPDALQ 87
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 88 GFKITQNNAMKISFAKK 104
>gi|403344910|gb|EJY71809.1| U2 small nuclear ribonucleoprotein b'' [Oxytricha trifallax]
gi|403363680|gb|EJY81589.1| U2 small nuclear ribonucleoprotein b'' [Oxytricha trifallax]
Length = 322
Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 61/223 (27%), Positives = 113/223 (50%), Gaps = 12/223 (5%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT---PKLRGQAWVVFSEVTAASN 67
T+Y++NLN+KIK +E+K +L+ LFSQ G + ++ T KLRGQA++VF E A
Sbjct: 106 TLYVRNLNDKIKTDEMKITLFHLFSQVGEVIEINMRNTNNSQKLRGQAFIVFREQDMADR 165
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
+++++ F + K + IQYAK SD K G F + + + +RK++ E ++
Sbjct: 166 GLQELKGFNLFGKSIDIQYAKQNSDVTLKNKGVF---DDSIRLNRRQKRKQKDELKRKEK 222
Query: 128 MANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVR 187
A+ +++ +++ N + I NLP +L+ L + YPG +
Sbjct: 223 KEKLVIAEQQLKQQLNYKEMALKQS----NAIAIDNLPGNYNQLLLQELLRNYPGVADYN 278
Query: 188 MIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNP-MAITFA 229
+ + + +A V F + +A+ L ++I + + +TF
Sbjct: 279 L-DVEKHVATVHFHTSNDAKVALAGLNQYQIDSEGTQLRVTFV 320
>gi|354547986|emb|CCE44721.1| hypothetical protein CPAR2_405250 [Candida parapsilosis]
Length = 228
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 66/233 (28%), Positives = 120/233 (51%), Gaps = 18/233 (7%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P QTIYI N+N+K+ +++K L L SQ+ + ++ KT KL+GQA+V F + AS
Sbjct: 5 PKQTIYINNINDKVSIDKVKSVLATLLSQH-KPTNISLAKTLKLKGQAFVTFETIDDASK 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCV-----AKEDGSFVPREKKKKQEEKAERKRRAEE 122
A+ + N + K + + +A+S+SD + K+ E K K++ +A+ K + +
Sbjct: 64 AIESLNNQEVFSKRISVTFARSESDVLLDKNELKQIRKIRHEEHKIKKQSQAKNKNKT-K 122
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHE--TTSSMLEMLFQQY 180
+S + T + N S++N PN IL +QN+ T ++ FQ Y
Sbjct: 123 LSKSVLDKTTSTKKNQVDVDSWKN------LPPNRILLLQNISASLPITKETIDSYFQDY 176
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ--NPMAITFAKK 231
GF+ R + + ++F+EFE++ + +Q++ I + N + ++AKK
Sbjct: 177 AGFEMARYVSVR-HLSFIEFENEDVAQNCLQSVNEDDIKSKFGNDIVFSYAKK 228
>gi|119568196|gb|EAW47811.1| hCG22524, isoform CRA_b [Homo sapiens]
Length = 174
Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 55/77 (71%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN ILF+ NLP ET ML MLF Q+PGFKEV ++ + IAFVEFE+D ++ A ALQ
Sbjct: 98 PNYILFLNNLPEETNEMMLSMLFNQFPGFKEVCLVPGRHDIAFVEFENDGKAGAARDALQ 157
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT + M IT+AKK
Sbjct: 158 GFKITTSHAMKITYAKK 174
Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 42/51 (82%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQA 55
DI PN TIYI N+N+KIKKEELKR LY LFSQ+G + D VALKT K+RG+A
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRCLYALFSQFGHVVDFVALKTMKMRGRA 52
>gi|300175345|emb|CBK20656.2| unnamed protein product [Blastocystis hominis]
Length = 83
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 42/75 (56%), Positives = 56/75 (74%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+YI NLN+++ KE+L+RSLY LFSQ+G + DVVALKT ++RGQAWV F A++
Sbjct: 7 PIPTLYINNLNDRLPKEQLRRSLYMLFSQFGIVLDVVALKTERMRGQAWVSFLTPQNATD 66
Query: 68 AVRQMQNFPFYDKPM 82
A+ +Q F FY KPM
Sbjct: 67 AMNSLQGFDFYGKPM 81
>gi|425868433|gb|AFY04346.1| sans fille, partial [Neobellieria bullata]
Length = 109
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 51/119 (42%), Positives = 68/119 (57%), Gaps = 12/119 (10%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V+F E+ +ASNA+R MQ FPFYDKPMRI Y+K+ SD VAK G+F
Sbjct: 1 KMRGQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYSKTDSDVVAKMKGTF-------- 52
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
ER ++ + + + + + A N NTQ PN ILF+ NLP ET
Sbjct: 53 ----KERPKKQKPPKPVAPVEEKKDKKKKASNAENANPNTQTEQPPNQILFLTNLPEET 107
>gi|405118309|gb|AFR93083.1| hypothetical protein CNAG_06716 [Cryptococcus neoformans var.
grubii H99]
Length = 262
Score = 94.0 bits (232), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 76/256 (29%), Positives = 109/256 (42%), Gaps = 34/256 (13%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P+ T+Y+ L K KK EL++ LY LFS YGR+ DVVA K RGQA+VVF E AA+
Sbjct: 7 PSPTLYVSGLETKTKKPELRQQLYALFSPYGRVIDVVAKKHDGGRGQAFVVFEEQVAATA 66
Query: 68 AVRQMQNFPFYDKPM-RIQYAKSKSDCVAKEDGSFVPRE------------KKKKQEEKA 114
A+R + FY+K + RI YAK S RE + + + E+
Sbjct: 67 ALRGLTGETFYNKELQRISYAKKPSYATTARQDPSASREAAAIQAAKLTVSRAQDEYEQL 126
Query: 115 ERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNN--------ILFIQNLPH 166
E++R EEA G + A + + + + +L NLP
Sbjct: 127 EKERHDEEAGLLGEKRGLEDEQEERGAKRVKQEDDEAMEIEMDEEEDEEKPVLICSNLPA 186
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEA---------KPGIAFVEFEDDVQS----SMAMQAL 213
E + ++ LF QY GF + + KP V F QS + A +
Sbjct: 187 ECNADIMGALFSQYQGFVSATQLPSSFTPPSSHPKPNPGAVSFHATFQSRDHAAKAKDEV 246
Query: 214 QGFKITPQNPMAITFA 229
G+ + P M T A
Sbjct: 247 NGYLMQPGWAMTATLA 262
>gi|259016052|gb|ACV89308.1| sans fille [Musca domestica]
Length = 85
Score = 93.6 bits (231), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 52/127 (40%), Positives = 64/127 (50%), Gaps = 42/127 (33%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V+F E+ +ASNA+R MQ FPFYDKPMRI YAK+ SD VAK G+F R KK K
Sbjct: 1 KMRGQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVAKMKGTFKERPKKVK 60
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
++ PN ILF+ NLP ET
Sbjct: 61 EQ------------------------------------------PPNQILFLTNLPEETN 78
Query: 170 SSMLEML 176
ML +L
Sbjct: 79 EMMLSLL 85
>gi|301761836|ref|XP_002916340.1| PREDICTED: LOW QUALITY PROTEIN: u2 small nuclear
ribonucleoprotein B''-like [Ailuropoda melanoleuca]
Length = 163
Score = 93.2 bits (230), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/81 (51%), Positives = 58/81 (71%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI P+ I N+N+KIKKEEL+ SL LFSQ+G + D+VALK +RGQ +V+ E+ +
Sbjct: 2 DIRPSHIIDTNNMNDKIKKEELESSLXALFSQFGHVVDIVALKAMNMRGQDFVIVKELAS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQ 85
++A RQ+Q FPFY K M+IQ
Sbjct: 62 PTSAFRQLQGFPFYGKXMQIQ 82
Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/74 (51%), Positives = 50/74 (67%)
Query: 158 ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFK 217
ILF+ + E M MLF Q+PGFKEV ++ + IAF+EFE+D Q+ +A ALQ FK
Sbjct: 86 ILFLISFSEEINEMMXSMLFNQFPGFKEVLLVPXRHDIAFMEFENDEQAGVAXDALQEFK 145
Query: 218 ITPQNPMAITFAKK 231
ITP N M I++AKK
Sbjct: 146 ITPXNAMKISYAKK 159
>gi|170090870|ref|XP_001876657.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648150|gb|EDR12393.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 98
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 36/75 (48%), Positives = 58/75 (77%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN T+Y+ NLN+K+ K+EL+ L+ LF+ YG+I D++A K+ K+RGQA++VF+++ A++
Sbjct: 8 PNTTLYLNNLNDKVNKDELRTQLFALFTTYGKIIDIIASKSQKMRGQAFLVFTDLAGATS 67
Query: 68 AVRQMQNFPFYDKPM 82
A+R + FYDKPM
Sbjct: 68 AMRACEGMMFYDKPM 82
>gi|148693401|gb|EDL25348.1| mCG126247 [Mus musculus]
Length = 65
Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 39/61 (63%), Positives = 51/61 (83%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+K+KKEELKRSLY LFSQ+G + D+VALKT K+R QA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKMKKEELKRSLYALFSQFGHVVDIVALKTMKMRAQAFVIFKELCS 61
Query: 65 A 65
+
Sbjct: 62 S 62
>gi|71023005|ref|XP_761732.1| hypothetical protein UM05585.1 [Ustilago maydis 521]
gi|46101218|gb|EAK86451.1| hypothetical protein UM05585.1 [Ustilago maydis 521]
Length = 303
Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 62/216 (28%), Positives = 102/216 (47%), Gaps = 13/216 (6%)
Query: 25 ELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84
EL++ L LFS YGR+ DVVA + P +RGQA+VVF V+ +S A R ++ FPFY K + I
Sbjct: 88 ELRQQLLALFSTYGRVLDVVATRAPSMRGQAFVVFESVSFSSAAKRGLEGFPFYGKSLHI 147
Query: 85 QYAK-SKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAAS 143
+Y+ +KS + K + ++ + RR+E+ S + N A
Sbjct: 148 EYSTGTKSKALLKRELGHEALMERDWERSHTLVSRRSEKRDLLSQQDAE-EDENTTVQAQ 206
Query: 144 FRNANTQETAAPNNILFI-QNLPHETTSSMLEMLFQQYPGFKEV----RMIEAKP----- 193
A ++ A + IL + + +P +L+ LFQ + GF +V R + P
Sbjct: 207 DDEATRRKRAKLDKILLVAERIPATIQLHILQTLFQSHSGFVDVIPADRTQQDDPKQNND 266
Query: 194 -GIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228
A + F+ + A L G ++ P + + F
Sbjct: 267 DWTAHIHFDSKAHAEAARNTLDGVQLDPLYKLDLHF 302
>gi|70914065|ref|XP_731718.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56501874|emb|CAH85078.1| hypothetical protein PC301396.00.0 [Plasmodium chabaudi chabaudi]
Length = 90
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 42/86 (48%), Positives = 59/86 (68%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DIPPNQT+YI NL +KI +LK LY F YG + DVV K+ KLRGQA+V+FS + +
Sbjct: 5 DIPPNQTLYINNLEDKINVNDLKYLLYEFFCPYGNVLDVVIKKSNKLRGQAFVIFSNIAS 64
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSK 90
++ A + ++ PF +K + I YAK+K
Sbjct: 65 STLAYKNLKGKPFLNKNININYAKTK 90
>gi|380091235|emb|CCC11092.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 232
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/177 (32%), Positives = 93/177 (52%), Gaps = 23/177 (12%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y++NL E++K E LK +L +FS+YG + D+VA K +GQA+VVF + +A
Sbjct: 8 PIATVYVRNLEERVKPEPLKEALRTIFSEYGNVIDIVAKTNLKAKGQAFVVFDKPESAQA 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS----------FVPREKKKKQEEKAERK 117
A+ ++Q F ++KPM + AK++SD + G+ + + KK+ E AE++
Sbjct: 68 AIEELQGFELFEKPMLVALAKTRSDATVIQTGNEEEFDQHKRRRIAEKDKKRALEVAEQQ 127
Query: 118 RR--------AEEAQQSSMANGTGAQSNG-GTAASFRNANTQETAAPNNILFIQNLP 165
R A +A+ + G G ++ G G AA + E PN IL + P
Sbjct: 128 NRLKRPLQGAAPDARPAKNQRGAGLKATGQGPAAVVPD----EYLPPNRILSFRTCP 180
>gi|300174216|gb|ADJ68076.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174218|gb|ADJ68077.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174220|gb|ADJ68078.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174222|gb|ADJ68079.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174224|gb|ADJ68080.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174226|gb|ADJ68081.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174228|gb|ADJ68082.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174230|gb|ADJ68083.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174232|gb|ADJ68084.1| putative sansfille protein [Cecidostiba fungosa]
gi|300174234|gb|ADJ68085.1| putative sansfille protein [Caenacis lauta]
Length = 120
Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 57/124 (45%), Positives = 73/124 (58%), Gaps = 12/124 (9%)
Query: 57 VVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKA-- 114
V+F E+ +A+NA+R MQ FPFYDKPMRI Y+K+ SD +AK G+F R KK K+ A
Sbjct: 1 VIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDVIAKMKGTFTERPKKPKRVIPAAD 60
Query: 115 -----ERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
+KR E+A+Q M GA + G A NA E PN ILF+ NLP ET+
Sbjct: 61 EEAKKAKKRAKEQAKQQQMGYTPGATQHAGLA----NAAVPEQ-PPNQILFLTNLPDETS 115
Query: 170 SSML 173
ML
Sbjct: 116 EMML 119
>gi|238598482|ref|XP_002394620.1| hypothetical protein MPER_05461 [Moniliophthora perniciosa FA553]
gi|215463934|gb|EEB95550.1| hypothetical protein MPER_05461 [Moniliophthora perniciosa FA553]
Length = 191
Score = 90.1 bits (222), Expect = 7e-16, Method: Compositional matrix adjust.
Identities = 46/101 (45%), Positives = 65/101 (64%), Gaps = 10/101 (9%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRI----FDVVALKTPKLRGQAWVVFSEVT 63
PN T+Y+ NLN+K+ KEE Y L S + +VA K PK+RGQA++VF+++
Sbjct: 7 PNNTLYVNNLNDKVNKEE-----YALNSSPSSPPMAEYHIVASKNPKMRGQAFLVFTDLA 61
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVA-KEDGSFVP 103
A+ A+R + FYDKPMRI YAK+KS + +ED +FVP
Sbjct: 62 GATAALRACEGMLFYDKPMRIDYAKTKSYATSRREDANFVP 102
>gi|425868401|gb|AFY04331.1| sans fille, partial [Hermetia illucens]
Length = 116
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 69/128 (53%), Gaps = 12/128 (9%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V+F E+ +ASNA+R MQ FPFYDKPMRI YAK+ SD VA+ G++
Sbjct: 1 KMRGQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVARMKGTY-------- 52
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
K K+ S + A S +T E PN ILF+ NLP ET
Sbjct: 53 ---KERPKKIKPPKPAPSEEKKEKKKKAANNADSASANSTVE-QPPNQILFLTNLPEETN 108
Query: 170 SSMLEMLF 177
ML MLF
Sbjct: 109 EMMLSMLF 116
>gi|425868403|gb|AFY04332.1| sans fille, partial [Acrosathe novella]
Length = 114
Score = 89.7 bits (221), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 56/128 (43%), Positives = 76/128 (59%), Gaps = 14/128 (10%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V+F E+++ASNA+R MQ FPFYDKPMRI YAKS SD +A+ G++ R KK K
Sbjct: 1 KMRGQAFVIFKEISSASNALRTMQGFPFYDKPMRIAYAKSDSDMIARMKGTYKERPKKIK 60
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
+ A + + E+ ++SS + + PN ILF+ NLP ET
Sbjct: 61 PPKPAPSEEKKEKKKKSSADSANSNST--------------AEQPPNQILFLTNLPEETN 106
Query: 170 SSMLEMLF 177
ML MLF
Sbjct: 107 EMMLSMLF 114
>gi|403223443|dbj|BAM41574.1| U1 snRNP protein [Theileria orientalis strain Shintoku]
Length = 418
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 46/124 (37%), Positives = 75/124 (60%), Gaps = 1/124 (0%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
I PNQT+YI+NLN+++ + ++ +L LFS Y + DV+ +K+ RGQAWV+FS + A
Sbjct: 108 IEPNQTLYIRNLNDRVNTKVMENALRELFSAY-PLLDVILMKSFWRRGQAWVIFSTIENA 166
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
+ A+ + F Y M I YA KS V+K +G++VP ++K + + ++R Q
Sbjct: 167 AKAMFEFNGFLLYGHAMHINYALEKSYLVSKMNGTYVPSDRKGVKMKPRRIRQRELLYYQ 226
Query: 126 SSMA 129
S+ A
Sbjct: 227 SNPA 230
Score = 45.4 bits (106), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQA 212
N LF++NLP T+ + +F + PGF E R+I + +AF++F+ D SS A+Q
Sbjct: 349 NKTLFVENLPENVTNLDVVNVFNKMPGFVEARVIIPR-RVAFIDFDSDNSSSYALQG 404
>gi|358340304|dbj|GAA48227.1| U1 small nuclear ribonucleoprotein A [Clonorchis sinensis]
Length = 314
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/77 (50%), Positives = 54/77 (70%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN ILF+ NLP ++ +ML MLF Q+ G++EVRM+ + IAFVEF +++++ A LQ
Sbjct: 238 PNKILFLTNLPEDSDEAMLSMLFNQFSGYREVRMVPGRHDIAFVEFGNEIEAGAAKHGLQ 297
Query: 215 GFKITPQNPMAITFAKK 231
GF I P P+ ITFAKK
Sbjct: 298 GFNIRPGRPIRITFAKK 314
>gi|149240716|ref|XP_001526207.1| hypothetical protein LELG_02765 [Lodderomyces elongisporus NRRL
YB-4239]
gi|146450330|gb|EDK44586.1| hypothetical protein LELG_02765 [Lodderomyces elongisporus NRRL
YB-4239]
Length = 234
Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 61/232 (26%), Positives = 116/232 (50%), Gaps = 10/232 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P +TIY+ NLN+K+ +L+ +L L Y +++ KT +L+GQA++ F +VT A
Sbjct: 5 PKRTIYLNNLNDKVSINKLRSNLATLLQPYNPT-NIIVAKTLRLKGQAFITFQDVTNAQA 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVA---KEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+ Q+ N + K MR +A ++D V ++ + R K + K + R +
Sbjct: 64 AINQLNNKQLFSKSMRASFAHLENDAVLSPKEQQEQYSRRYTGKIERNKVAKLSRGKPGN 123
Query: 125 Q--SSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH-ETTSSMLEMLFQQYP 181
Q S+ A G + + + + PN+IL +QN+ + + +E LF +
Sbjct: 124 QRASTKTRKGDAVVEGQREKNNIDVSMWKNLPPNHILLLQNISSTQVSKETIEALFTNFE 183
Query: 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ--NPMAITFAKK 231
GF+ R ++ + +AF+EFE++ + + A+ + + N + ++AKK
Sbjct: 184 GFENTRFVKVR-NLAFIEFENEEFAKQCLAAMDDTVLKEKFGNDIIFSYAKK 234
>gi|401882121|gb|EJT46394.1| hypothetical protein A1Q1_05041 [Trichosporon asahii var. asahii
CBS 2479]
Length = 192
Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 43/94 (45%), Positives = 64/94 (68%), Gaps = 1/94 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P+ T+++ NL K KK EL++ LY LF+ YGR+ D+VA K RGQA++VF E AA+
Sbjct: 6 PSPTLFVGNLETKTKKPELRQQLYALFTPYGRVIDIVAKKHDGGRGQAFIVFEEQAAATA 65
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGS 100
A+R + + FY++ M I YAK+ S+ +A+ED S
Sbjct: 66 ALRGLNDTQFYNRDMHIAYAKNPSNATLAREDPS 99
>gi|425868374|gb|AFY04319.1| sans fille, partial [Arachnocampa flava]
Length = 116
Score = 88.2 bits (217), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 55/128 (42%), Positives = 68/128 (53%), Gaps = 12/128 (9%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V F E+ +ASNA+R MQ FPFYDKPMRI YAK+ SD VA+ G++
Sbjct: 1 KMRGQAFVXFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVARMKGTY-------- 52
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
K K+ S + A S +T E PN ILF+ NLP ET
Sbjct: 53 ---KERPKKIKPPKPAPSEEKKEKKKKAANNADSASANSTVE-QPPNQILFLTNLPEETN 108
Query: 170 SSMLEMLF 177
ML MLF
Sbjct: 109 EMMLSMLF 116
>gi|70991385|ref|XP_750541.1| U1 small nuclear ribonucleoprotein A [Aspergillus fumigatus Af293]
gi|66848174|gb|EAL88503.1| U1 small nuclear ribonucleoprotein A, putative [Aspergillus
fumigatus Af293]
gi|159124097|gb|EDP49215.1| U1 small nuclear ribonucleoprotein A, putative [Aspergillus
fumigatus A1163]
Length = 294
Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 46/112 (41%), Positives = 67/112 (59%), Gaps = 20/112 (17%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQ 71
+Y NL +K++K +L+ SLY LFS YG + DVVA+KT K+RGQA +VF +V A++ A+R
Sbjct: 107 LYCTNLPDKLRKYDLRLSLYTLFSTYGTVLDVVAMKTEKMRGQAHIVFKDVQASTQAMRA 166
Query: 72 MQNFPFYDKPM-------------------RIQYAKSKSDCVAKEDGSF-VP 103
+Q F F+ K M +I YAK SD +A+ G++ VP
Sbjct: 167 LQGFEFFGKEMVSHFFFNGLATALNTVNFQKIVYAKGTSDVIARLRGTYNVP 218
>gi|190345684|gb|EDK37611.2| hypothetical protein PGUG_01709 [Meyerozyma guilliermondii ATCC
6260]
Length = 141
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 39/91 (42%), Positives = 60/91 (65%), Gaps = 2/91 (2%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
I P+QT+Y+ NLN+++ + LK +LY LFS YG + D++ PK+RGQA ++ VT+A
Sbjct: 21 IRPSQTLYVNNLNDQVSRRLLKHNLYLLFSTYGDVIDIII--RPKMRGQAHIILESVTSA 78
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAK 96
S+A + F+ K M + YAK+KS VA+
Sbjct: 79 SSAKAGLDKRRFFSKEMSVNYAKTKSRIVAR 109
>gi|444708342|gb|ELW49419.1| U2 small nuclear ribonucleoprotein B'' [Tupaia chinensis]
gi|444708343|gb|ELW49420.1| U2 small nuclear ribonucleoprotein B'' [Tupaia chinensis]
Length = 130
Score = 87.0 bits (214), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 55/133 (41%), Positives = 77/133 (57%), Gaps = 3/133 (2%)
Query: 82 MRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTA 141
M+IQYAK+ SD ++K G+F +EKKK++++ ++ A A + G G ++ T
Sbjct: 1 MQIQYAKTDSDIISKMHGTFADKEKKKEKKKAKTVEQAATTANKKP---GQGTPNSANTQ 57
Query: 142 ASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFE 201
+ PN ILF+ NLP ET ML MLF Q+PGFKEVR+ + AFVEFE
Sbjct: 58 GNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFKEVRLAPGRHDSAFVEFE 117
Query: 202 DDVQSSMAMQALQ 214
+D Q+ A ALQ
Sbjct: 118 NDGQAGAAGDALQ 130
>gi|401878862|gb|AFQ30723.1| putative sansfille, partial [Cecidostiba semifascia]
gi|401878866|gb|AFQ30725.1| putative sansfille, partial [Cecidostiba semifascia]
Length = 115
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 57 VVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKA-- 114
V+F E+ +A+NA+R MQ FPFYDKPMRI Y+K+ SD +AK G+F R KK K+ A
Sbjct: 1 VIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPKRVIPAAD 60
Query: 115 -----ERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
+KR E+A+Q M GA + G A NA E PN ILF+ NLP ET+
Sbjct: 61 EEAKKAKKRAKEQAKQQQMGYTPGAAQHAGLA----NAAVPEQ-PPNQILFLTNLPDETS 115
>gi|146420372|ref|XP_001486142.1| hypothetical protein PGUG_01813 [Meyerozyma guilliermondii ATCC
6260]
Length = 220
Score = 86.7 bits (213), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 67/239 (28%), Positives = 118/239 (49%), Gaps = 37/239 (15%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
+T+YI+NLNEK+ L+R L +F+++G + + A K K++GQA+V F+ ++ A+
Sbjct: 2 ETLYIRNLNEKVSVNTLRRLLESIFAKFGEVLQITANKNIKMKGQAFVTFANKLQSAAAM 61
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMA 129
++Q + + KP+ I YAK S D F+ KK E E+++ + ++ ++A
Sbjct: 62 EKLQLYELFQKPIEISYAKKNS------DQYFIAV---KKDTETVEKRKNEKAKRELTLA 112
Query: 130 NGTGAQSNGGTAASFRNANTQETAAPNNI---LFIQNLP----------HETT---SSML 173
N Q++ A AAP I + I++ TT + +L
Sbjct: 113 NKRKVQNDEPDFA----------AAPEPIKKKIKIEDWKLLPPNNVLLLQNTTVDLNDVL 162
Query: 174 EMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI-TFAKK 231
+ F +PGF R ++A ++F+EFE + S+ +Q I P A+ T+AKK
Sbjct: 163 QAFFGSFPGFINTRFVKA-LNLSFIEFESEELSTKCLQGTTKEDILKLGPEAVLTYAKK 220
>gi|440793172|gb|ELR14364.1| SNF, putative [Acanthamoeba castellanii str. Neff]
Length = 65
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 33/62 (53%), Positives = 52/62 (83%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++PPN+T+Y+ NLNEK+K++EL+++LY LFSQYG + D+VA K+ KLRGQA+V+F ++
Sbjct: 4 EVPPNETLYVNNLNEKVKRDELRKALYGLFSQYGTVLDIVAQKSLKLRGQAFVIFRDIAH 63
Query: 65 AS 66
+
Sbjct: 64 GA 65
>gi|401878864|gb|AFQ30724.1| putative sansfille, partial [Cecidostiba semifascia]
Length = 115
Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 57 VVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKA-- 114
V+F E+ +A+NA+R MQ FPFYDKPMRI Y+K+ SD +AK G+F R KK K+ A
Sbjct: 1 VIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPKRVIPAAD 60
Query: 115 -----ERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
+KR E+A+Q M GA + G A NA E PN ILF+ NLP ET+
Sbjct: 61 EEAKKAKKRAKEQAKQQQMGYTPGAAQHTGLA----NAAVPEQ-PPNQILFLTNLPDETS 115
>gi|259016059|gb|ACV89311.1| sans fille [Nannochorista sp. BMW-2009]
Length = 61
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 37/60 (61%), Positives = 48/60 (80%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RGQA+V+F E+++A+NA+R MQ FPFYDKPMRIQY K+ SD +AK G+F R KK K
Sbjct: 2 KMRGQAFVIFKEISSATNALRSMQGFPFYDKPMRIQYCKTDSDIIAKMKGTFSERPKKHK 61
>gi|294655304|ref|XP_457426.2| DEHA2B10868p [Debaryomyces hansenii CBS767]
gi|199429852|emb|CAG85430.2| DEHA2B10868p [Debaryomyces hansenii CBS767]
Length = 116
Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 36/85 (42%), Positives = 57/85 (67%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+Y+ NLN+KI+ LK +LY FS YG I D+V K+RGQA ++F+ V A+NA++
Sbjct: 24 TLYVNNLNDKIQSATLKHNLYVYFSTYGDIIDIVMKAQGKMRGQAHIIFANVMHATNAMK 83
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVA 95
+Q PF++K + I+Y+ KS ++
Sbjct: 84 SLQGKPFFEKDLHIEYSLKKSKIIS 108
>gi|329317647|gb|AEB90958.1| putative sansfille [Mesopolobus amaenus]
gi|329317649|gb|AEB90959.1| putative sansfille [Mesopolobus amaenus]
gi|329317651|gb|AEB90960.1| putative sansfille [Mesopolobus amaenus]
Length = 115
Score = 85.5 bits (210), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 55/120 (45%), Positives = 71/120 (59%), Gaps = 12/120 (10%)
Query: 57 VVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKA-- 114
V+F E+ +A+NA+R MQ FPFYDKPMRI Y+K+ SD +AK G+F R KK K+ A
Sbjct: 1 VIFKEIASATNALRSMQGFPFYDKPMRINYSKTDSDIIAKMKGTFTERPKKPKRVIPAAD 60
Query: 115 -----ERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
+KR E+A+Q M GA + G A NA E PN ILF+ NLP ET+
Sbjct: 61 EEAKKAKKRAKEQAKQQQMGYTPGAAQHVGLA----NAAVPEQ-PPNQILFLTNLPDETS 115
>gi|448104887|ref|XP_004200362.1| Piso0_002948 [Millerozyma farinosa CBS 7064]
gi|448108043|ref|XP_004200993.1| Piso0_002948 [Millerozyma farinosa CBS 7064]
gi|359381784|emb|CCE80621.1| Piso0_002948 [Millerozyma farinosa CBS 7064]
gi|359382549|emb|CCE79856.1| Piso0_002948 [Millerozyma farinosa CBS 7064]
Length = 123
Score = 84.7 bits (208), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 37/97 (38%), Positives = 64/97 (65%), Gaps = 1/97 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVV-ALKTPKLRGQAWVVFSEVT 63
D P +T+Y KNLN+K+ + +K +LY LFS YG + D+V K +LRGQA ++FS +
Sbjct: 27 DAVPKETLYAKNLNDKVNPDTMKHNLYLLFSTYGDVIDIVFKPKNKRLRGQAHIIFSSAS 86
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS 100
A+ A+ ++Q+ F++K +++ YAK +S ++D +
Sbjct: 87 HAARALDELQHVSFFEKQLQMSYAKKRSKVFVEQDDA 123
>gi|146420161|ref|XP_001486038.1| hypothetical protein PGUG_01709 [Meyerozyma guilliermondii ATCC
6260]
Length = 141
Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/91 (41%), Positives = 59/91 (64%), Gaps = 2/91 (2%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
I P+QT+Y+ NLN+++ + LK +LY LFS YG + D++ PK+RGQA ++ VT+A
Sbjct: 21 IRPSQTLYVNNLNDQVLRRLLKHNLYLLFSTYGDVIDIII--RPKMRGQAHIILESVTSA 78
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAK 96
+A + F+ K M + YAK+KS VA+
Sbjct: 79 LSAKAGLDKRRFFSKEMSVNYAKTKSRIVAR 109
>gi|425868387|gb|AFY04324.1| sans fille, partial [Sylvicola fenestralis]
Length = 107
Score = 83.6 bits (205), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 51/124 (41%), Positives = 66/124 (53%), Gaps = 23/124 (18%)
Query: 56 WVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK------ 109
+V+F E+ +++NA+R MQ FPFYDKPMRI Y K SD +AK G++ R KK K
Sbjct: 1 FVIFKEIASSTNALRTMQGFPFYDKPMRIAYCKGDSDVIAKLKGTYKERPKKSKPPKPVA 60
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169
E+K E+KR+ AN +N TA PN ILF+ NLP ET
Sbjct: 61 SEDKKEKKRKHN-------ANAELGATNNSTAEQ----------PPNQILFLTNLPEETN 103
Query: 170 SSML 173
ML
Sbjct: 104 EMML 107
>gi|380746070|gb|AFE47968.1| sans fille, partial [Drosophila acanthoptera]
Length = 99
Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 51/111 (45%), Positives = 62/111 (55%), Gaps = 12/111 (10%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R KK K + A
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPA--- 57
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
AEE + + S N NTQ PN ILF+ NLP ET
Sbjct: 58 LGAEEKKDKKKKQSSAENS---------NPNTQTEQPPNQILFLTNLPEET 99
>gi|443925378|gb|ELU44231.1| RNA recognition motif domain-containing protein [Rhizoctonia solani
AG-1 IA]
Length = 154
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 54/74 (72%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
++T+YI+NLNEK+K E++K +L LF YG+I DVVA ++RGQA+V F A+ A
Sbjct: 53 SETLYIQNLNEKVKIEQMKSTLRSLFKGYGKILDVVAHGNLRMRGQAFVSFESKEVAAKA 112
Query: 69 VRQMQNFPFYDKPM 82
+++++NFP Y KPM
Sbjct: 113 LKEVKNFPLYAKPM 126
>gi|70933887|ref|XP_738251.1| small nuclear ribonucleoprotein (snRNP) [Plasmodium chabaudi
chabaudi]
gi|56514315|emb|CAH82541.1| small nuclear ribonucleoprotein (snRNP), putative [Plasmodium
chabaudi chabaudi]
Length = 107
Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/87 (43%), Positives = 55/87 (63%), Gaps = 1/87 (1%)
Query: 143 SFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFED 202
++++AN E LF+QNLP E + LE+LF QYPGF EVR I + +AF++F
Sbjct: 21 NYKSANNYENKVNQFTLFVQNLPDEINKNALEILFNQYPGFSEVRYIPGR-NVAFIDFNS 79
Query: 203 DVQSSMAMQALQGFKITPQNPMAITFA 229
+AM LQ FKITP++PM I+++
Sbjct: 80 YQNGEVAMNGLQSFKITPEHPMKISWS 106
>gi|259016049|gb|ACV89307.1| sans fille [Ctenocephalides felis]
Length = 82
Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 46/120 (38%), Positives = 58/120 (48%), Gaps = 42/120 (35%)
Query: 53 GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
GQA+V+F E+ +ASNA+R MQ FPFYDKPMRI YAK+ SD VA+ G++ R KK K++
Sbjct: 1 GQAFVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVARMKGTYKERPKKIKEQ- 59
Query: 113 KAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSM 172
PN ILF+ NLP ET M
Sbjct: 60 -----------------------------------------PPNQILFLTNLPEETNEMM 78
>gi|380746136|gb|AFE48001.1| sans fille, partial [Drosophila navojoa]
Length = 99
Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ ER
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY------------KERP 48
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
++ + + + T+A N NTQ PN ILF+ NLP ET
Sbjct: 49 KKVKPPKPVPGVEEKKDKKKKQTSAENANPNTQTEQPPNQILFLTNLPEET 99
>gi|406700831|gb|EKD03993.1| hypothetical protein A1Q2_01667 [Trichosporon asahii var. asahii
CBS 8904]
Length = 282
Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 72/275 (26%), Positives = 113/275 (41%), Gaps = 55/275 (20%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRI--------------------------F 41
P+ T+++ NL K KK EL++ LY LF+ YGR+
Sbjct: 6 PSPTLFVGNLETKTKKPELRQQLYALFTPYGRVGDMETNGCTRWADYSFGSTAIKLTGRI 65
Query: 42 DVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDC-VAKEDGS 100
D+VA K RGQA++VF E AA+ A+R + + FY++ M I YAK+ S+ +A+ED S
Sbjct: 66 DIVAKKHDGGRGQAFIVFEEQAAATAALRGLNDTQFYNRDMHIAYAKNPSNATLAREDPS 125
Query: 101 FVPREK---------KKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQE 151
+ K Q E + +R S A + A + + E
Sbjct: 126 KSKEARAIEAARVTISKAQGEYEQLEREKAGGINSKRAPDADVEDRASKKAKTEDDDDME 185
Query: 152 TAAPNN-----ILFIQNLPHETTSSMLEMLF-QQYPGFKEVRMIEA---------KPGIA 196
++ + NLP E +++ LF +YPGF I A KP
Sbjct: 186 IEMEDDDDVNVSVLCSNLPAECNEAIMGALFSHRYPGFTRAVEINAATPLPPSHPKPNAG 245
Query: 197 F----VEFEDDVQSSMAMQALQGFKITPQNPMAIT 227
F Q+ ++ L G+ + P MA++
Sbjct: 246 AKTFRATFASRAQAEAVIKPLSGYVMQPGWDMAVS 280
>gi|119568195|gb|EAW47810.1| hCG22524, isoform CRA_a [Homo sapiens]
Length = 91
Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 42/51 (82%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQA 55
DI PN TIYI N+N+KIKKEELKR LY LFSQ+G + D VALKT K+RG+A
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRCLYALFSQFGHVVDFVALKTMKMRGRA 52
>gi|380746072|gb|AFE47969.1| sans fille, partial [Drosophila anceps]
gi|380746082|gb|AFE47974.1| sans fille, partial [Drosophila hydei]
gi|380746092|gb|AFE47979.1| sans fille, partial [Drosophila mettleri]
gi|380746094|gb|AFE47980.1| sans fille, partial [Drosophila micromettleri]
gi|380746100|gb|AFE47983.1| sans fille, partial [Drosophila neorepleta]
gi|380746110|gb|AFE47988.1| sans fille, partial [Drosophila peninsularis]
gi|380746130|gb|AFE47998.1| sans fille, partial [Drosophila pavani]
gi|380746158|gb|AFE48012.1| sans fille, partial [Drosophila limensis]
gi|380746164|gb|AFE48015.1| sans fille, partial [Drosophila eohydei]
gi|380746170|gb|AFE48018.1| sans fille, partial [Drosophila canapalpa]
Length = 99
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 60/111 (54%), Gaps = 12/111 (10%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ ER
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY------------KERP 48
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
++ + + + ++A N NTQ PN ILF+ NLP ET
Sbjct: 49 KKVKPPKPVPGVEEKKDKKKKQSSAENSNPNTQTEQPPNQILFLTNLPEET 99
>gi|380746076|gb|AFE47971.1| sans fille, partial [Drosophila fulvimaculoides]
gi|380746148|gb|AFE48007.1| sans fille, partial [Drosophila fulvimacula flavorepleta]
Length = 99
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 66/113 (58%), Gaps = 16/113 (14%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE-- 115
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R KK K + A
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPAAGL 60
Query: 116 RKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
+++ ++ +QSS N N N+Q PN ILF+ NLP ET
Sbjct: 61 EEKKDKKKKQSSAENS--------------NPNSQTEQPPNQILFLTNLPEET 99
>gi|380746078|gb|AFE47972.1| sans fille, partial [Drosophila hamatofila]
gi|380746080|gb|AFE47973.1| sans fille, partial [Drosophila hexastigma]
gi|380746084|gb|AFE47975.1| sans fille, partial [Drosophila koepferae]
gi|380746098|gb|AFE47982.1| sans fille, partial [Drosophila mulleri]
gi|380746104|gb|AFE47985.1| sans fille, partial [Drosophila nigrodumosa]
gi|380746108|gb|AFE47987.1| sans fille, partial [Drosophila parisiena]
gi|380746120|gb|AFE47993.1| sans fille, partial [Drosophila straubae]
gi|380746124|gb|AFE47995.1| sans fille, partial [Drosophila wheeleri]
gi|380746144|gb|AFE48005.1| sans fille, partial [Drosophila meridiana]
gi|380746156|gb|AFE48011.1| sans fille, partial [Drosophila arizonae]
gi|380746162|gb|AFE48014.1| sans fille, partial [Drosophila meridiana rioensis]
gi|380746166|gb|AFE48016.1| sans fille, partial [Drosophila mojavensis baja]
gi|380746168|gb|AFE48017.1| sans fille, partial [Drosophila martensis]
gi|380746172|gb|AFE48019.1| sans fille, partial [Drosophila huaylasi]
gi|380746174|gb|AFE48020.1| sans fille, partial [Drosophila meridionalis]
gi|380746182|gb|AFE48024.1| sans fille, partial [Drosophila spenceri]
gi|380746186|gb|AFE48026.1| sans fille, partial [Drosophila huichole]
Length = 99
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 16/113 (14%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE-- 115
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R KK K +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGV 60
Query: 116 RKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
+++ ++ +QSS N N NTQ PN ILF+ NLP ET
Sbjct: 61 EEKKDKKKKQSSAENA--------------NPNTQTEQPPNQILFLTNLPEET 99
>gi|380746106|gb|AFE47986.1| sans fille, partial [Drosophila nigrospiracula]
Length = 99
Score = 80.1 bits (196), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 50/113 (44%), Positives = 65/113 (57%), Gaps = 16/113 (14%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE-- 115
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R KK K +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGI 60
Query: 116 RKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
+++ ++ +QSS N N NTQ PN ILF+ NLP ET
Sbjct: 61 EEKKDKKKKQSSAENA--------------NPNTQTEQPPNQILFLTNLPEET 99
>gi|150863925|ref|XP_001382572.2| hypothetical protein PICST_35154 [Scheffersomyces stipitis CBS
6054]
gi|149385181|gb|ABN64543.2| predicted protein [Scheffersomyces stipitis CBS 6054]
Length = 124
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/111 (40%), Positives = 68/111 (61%), Gaps = 14/111 (12%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ P+QT+YIKNLN+KI + +K +LY LFS YG I D+ K RGQA ++F+ V
Sbjct: 27 NLKPSQTLYIKNLNDKINPKIIKHNLYLLFSTYGDIIDIKNNK----RGQAHIIFTNVAG 82
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE 115
AS A++ +Q+ F+DK + I YA +S V E+ +K+EE+ E
Sbjct: 83 ASLALKCLQDEEFFDKKLVINYAIKESKIV----------ERARKEEEEIE 123
>gi|40950435|gb|AAR97851.1| sans fille [Drosophila navojoa]
gi|40950437|gb|AAR97852.1| sans fille [Drosophila navojoa]
gi|40950439|gb|AAR97853.1| sans fille [Drosophila navojoa]
gi|40950441|gb|AAR97854.1| sans fille [Drosophila navojoa]
gi|40950443|gb|AAR97855.1| sans fille [Drosophila navojoa]
gi|40950445|gb|AAR97856.1| sans fille [Drosophila navojoa]
Length = 98
Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 45/110 (40%), Positives = 60/110 (54%), Gaps = 12/110 (10%)
Query: 56 WVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE 115
+V+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ E
Sbjct: 1 FVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY------------KE 48
Query: 116 RKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLP 165
R ++ + + + T+A N NTQ PN ILF+ NLP
Sbjct: 49 RPKKVKPPKPVPGVEEKKDKKKKQTSAENANPNTQTEQPPNQILFLTNLP 98
>gi|380746140|gb|AFE48003.1| sans fille, partial [Drosophila virilis]
Length = 99
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/111 (42%), Positives = 62/111 (55%), Gaps = 12/111 (10%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ ++ K+ + +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYK---ERPKKVKPPKPA 57
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
AEE + + S N NTQ PN ILF+ NLP ET
Sbjct: 58 PGAEEKKDKKKKQSSTENS---------NPNTQTEQPPNQILFLTNLPEET 99
>gi|238488098|ref|XP_002375287.1| small nuclear ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
gi|220700166|gb|EED56505.1| small nuclear ribonucleoprotein, putative [Aspergillus flavus
NRRL3357]
Length = 147
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 50/69 (72%)
Query: 33 LFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSD 92
LFS YG + DVVA+KT ++RGQA +VF +V A++ A+R +Q F F+ K ++I YAK SD
Sbjct: 2 LFSTYGTVLDVVAMKTKRMRGQAHIVFKDVQASTQAMRALQGFEFFGKQLKIVYAKGTSD 61
Query: 93 CVAKEDGSF 101
+AK G++
Sbjct: 62 VIAKLRGAY 70
>gi|45184845|ref|NP_982563.1| AAR022Wp [Ashbya gossypii ATCC 10895]
gi|44980454|gb|AAS50387.1| AAR022Wp [Ashbya gossypii ATCC 10895]
gi|374105762|gb|AEY94673.1| FAAR022Wp [Ashbya gossypii FDAG1]
Length = 114
Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 39/89 (43%), Positives = 59/89 (66%), Gaps = 4/89 (4%)
Query: 3 TGDIP--PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
T D P P T+YI NLN+++K L+ +LY LFS +G + + +PKLRGQA+VV S
Sbjct: 23 TADEPGMPRSTLYISNLNDQVKISTLRTNLYLLFSTFGEVLRIAM--SPKLRGQAFVVLS 80
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKS 89
V A+ A+ +++ F+ KP+RIQ++KS
Sbjct: 81 TVDEANLAMISLKDESFFGKPLRIQFSKS 109
>gi|40950383|gb|AAR97825.1| sans fille [Drosophila mojavensis]
gi|40950385|gb|AAR97826.1| sans fille [Drosophila mojavensis]
gi|40950387|gb|AAR97827.1| sans fille [Drosophila mojavensis]
gi|40950389|gb|AAR97828.1| sans fille [Drosophila mojavensis]
gi|40950391|gb|AAR97829.1| sans fille [Drosophila mojavensis]
gi|40950393|gb|AAR97830.1| sans fille [Drosophila mojavensis]
gi|40950395|gb|AAR97831.1| sans fille [Drosophila mojavensis]
gi|40950397|gb|AAR97832.1| sans fille [Drosophila mojavensis]
gi|40950399|gb|AAR97833.1| sans fille [Drosophila mojavensis]
gi|40950401|gb|AAR97834.1| sans fille [Drosophila mojavensis]
gi|40950403|gb|AAR97835.1| sans fille [Drosophila mojavensis]
gi|40950405|gb|AAR97836.1| sans fille [Drosophila mojavensis]
gi|40950407|gb|AAR97837.1| sans fille [Drosophila mojavensis]
gi|40950409|gb|AAR97838.1| sans fille [Drosophila mojavensis]
gi|40950411|gb|AAR97839.1| sans fille [Drosophila mojavensis]
gi|40950413|gb|AAR97840.1| sans fille [Drosophila mojavensis]
gi|40950415|gb|AAR97841.1| sans fille [Drosophila mojavensis]
gi|40950417|gb|AAR97842.1| sans fille [Drosophila mojavensis]
gi|40950419|gb|AAR97843.1| sans fille [Drosophila mojavensis]
gi|40950421|gb|AAR97844.1| sans fille [Drosophila mojavensis]
gi|40950423|gb|AAR97845.1| sans fille [Drosophila mojavensis]
gi|40950425|gb|AAR97846.1| sans fille [Drosophila mojavensis]
gi|40950427|gb|AAR97847.1| sans fille [Drosophila mojavensis]
gi|40950429|gb|AAR97848.1| sans fille [Drosophila mojavensis]
gi|40950431|gb|AAR97849.1| sans fille [Drosophila mojavensis]
gi|40950433|gb|AAR97850.1| sans fille [Drosophila mojavensis]
gi|40950449|gb|AAR97858.1| sans fille [Drosophila arizonae]
gi|40950453|gb|AAR97860.1| sans fille [Drosophila arizonae]
gi|40950455|gb|AAR97861.1| sans fille [Drosophila arizonae]
gi|40950457|gb|AAR97862.1| sans fille [Drosophila mulleri]
gi|40950459|gb|AAR97863.1| sans fille [Drosophila mulleri]
gi|40950465|gb|AAR97866.1| sans fille [Drosophila straubae]
gi|40950467|gb|AAR97867.1| sans fille [Drosophila mayaguana]
Length = 98
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/112 (43%), Positives = 65/112 (58%), Gaps = 16/112 (14%)
Query: 56 WVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE 115
+V+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R KK K +
Sbjct: 1 FVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVP 60
Query: 116 --RKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLP 165
+++ ++ +QSS N N NTQ PN ILF+ NLP
Sbjct: 61 GVEEKKDKKKKQSSAENA--------------NPNTQTEQPPNQILFLTNLP 98
>gi|425868382|gb|AFY04323.1| sans fille, partial [Edwardsina gigantea]
Length = 90
Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/89 (42%), Positives = 56/89 (62%)
Query: 50 KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
K+RG A V+F E+ +ASNA+R MQ FPFYDKPMRI YAK+ SD VA+ G+ + ++KK
Sbjct: 1 KMRGXAXVIFKEIASASNALRTMQGFPFYDKPMRIAYAKTDSDVVARMKGTXIRADRKKI 60
Query: 110 QEEKAERKRRAEEAQQSSMANGTGAQSNG 138
+ + + ++ ++ AN T N
Sbjct: 61 KPPDSRHRXEEKKEKKKKAANDTDTCYNA 89
>gi|380746146|gb|AFE48006.1| sans fille, partial [Drosophila mercatorum pararepleta]
gi|380746150|gb|AFE48008.1| sans fille, partial [Drosophila mercatorum]
Length = 99
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 61/111 (54%), Gaps = 12/111 (10%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ ++ K+ + +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYK---ERPKKVKPPKPA 57
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
EE + + S N NTQ PN ILF+ NLP ET
Sbjct: 58 PGVEEKKDKKKKQSSAENS---------NPNTQTEQPPNQILFLTNLPEET 99
>gi|380746142|gb|AFE48004.1| sans fille, partial [Drosophila ellisoni]
Length = 99
Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 49/113 (43%), Positives = 64/113 (56%), Gaps = 16/113 (14%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE-- 115
+F E+ +ASNA+R MQ FPFYDKPMRI Y+K SD VAK G++ R KK K +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKCDSDIVAKLKGTYKERPKKVKPPKPVPGV 60
Query: 116 RKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
+++ ++ +QSS N N NTQ PN ILF+ NLP ET
Sbjct: 61 EEKKDKKKKQSSTENA--------------NPNTQTEQPPNQILFLTNLPEET 99
>gi|380746116|gb|AFE47991.1| sans fille, partial [Drosophila sonorae]
Length = 99
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 46/111 (41%), Positives = 61/111 (54%), Gaps = 12/111 (10%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ ++ K+ + +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYK---ERPKKVKPPKPM 57
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
EE + + S N NTQ PN ILF+ NLP ET
Sbjct: 58 PGVEEKKDKKKKQNSAENS---------NPNTQTEQPPNQILFLTNLPEET 99
>gi|40950451|gb|AAR97859.1| sans fille [Drosophila arizonae]
Length = 97
Score = 78.2 bits (191), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 49/111 (44%), Positives = 64/111 (57%), Gaps = 16/111 (14%)
Query: 57 VVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE- 115
V+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R KK K +
Sbjct: 1 VIFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPG 60
Query: 116 -RKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLP 165
+++ ++ +QSS N N NTQ PN ILF+ NLP
Sbjct: 61 VEEKKDKKKKQSSAENA--------------NPNTQTEQPPNQILFLTNLP 97
>gi|40950461|gb|AAR97864.1| sans fille [Drosophila parisiena]
gi|40950463|gb|AAR97865.1| sans fille [Drosophila parisiena]
gi|40950469|gb|AAR97868.1| sans fille [Drosophila huaylasi]
Length = 98
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 48/112 (42%), Positives = 65/112 (58%), Gaps = 16/112 (14%)
Query: 56 WVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE 115
+V+F E+ +ASNA+R MQ FPFYDKPMRI Y+K+ SD VAK G++ R KK K +
Sbjct: 1 FVIFKEIGSASNALRTMQGFPFYDKPMRIAYSKTDSDIVAKLKGTYKERPKKVKPPKPVP 60
Query: 116 --RKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLP 165
+++ ++ +QSS N N NTQ PN ILF+ NLP
Sbjct: 61 GVEEKKDKKKKQSSAENA--------------NPNTQTEQPPNQILFLTNLP 98
>gi|425868397|gb|AFY04329.1| sans fille, partial [Ogcodes basalis]
Length = 88
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 40/89 (44%), Positives = 60/89 (67%), Gaps = 7/89 (7%)
Query: 53 GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK--- 109
G+ +V+F E+++ASNA+R MQ FPFYDKP+RI YAK++SD VA+ G+F R K+ K
Sbjct: 1 GRRFVIFKEISSASNALRTMQGFPFYDKPLRIAYAKTESDIVARMKGTFKERPKRVKPPK 60
Query: 110 ---QEEKAERKRRAEEAQQSSMANGTGAQ 135
E++ E+K++ A S++N T Q
Sbjct: 61 PQPSEDRKEKKKKL-SANSDSVSNSTTEQ 88
>gi|50304193|ref|XP_452046.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|49641178|emb|CAH02439.1| KLLA0B11594p [Kluyveromyces lactis]
Length = 114
Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 36/86 (41%), Positives = 59/86 (68%), Gaps = 2/86 (2%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
T +I PN T+Y+KNLN++IK + ++ SLY LF+ YG + V TPK RGQA++ F V
Sbjct: 25 TIEIEPNNTVYVKNLNDQIKIQTVRESLYMLFATYGEVIKVSM--TPKQRGQAFITFKSV 82
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAK 88
A+ A+ +++ F++KP+ +Q++K
Sbjct: 83 DEANLALLSLKDELFFNKPLVLQFSK 108
>gi|340052814|emb|CCC47100.1| putative U2 small nuclear ribonucleoprotein B [Trypanosoma vivax
Y486]
Length = 114
Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 57/84 (67%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P QT+YI+ L +K+ EE++R+LY +Q+G + DV+ + +L GQA+VVF++V A+N
Sbjct: 4 PKQTLYIRGLPDKVSTEEMRRALYLYCTQFGPVLDVLYRNSSRLYGQAFVVFTDVATATN 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS 91
A R++ FY + ++ YAK +S
Sbjct: 64 ARRELHERCFYGRTVQAFYAKRQS 87
>gi|68464713|ref|XP_723434.1| hypothetical protein CaO19.4748 [Candida albicans SC5314]
gi|46445468|gb|EAL04736.1| hypothetical protein CaO19.4748 [Candida albicans SC5314]
Length = 131
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 40/111 (36%), Positives = 70/111 (63%), Gaps = 13/111 (11%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ P+QT+Y+KNLN KI K+ L +LY LFS +G D++++ G A+++FS + +
Sbjct: 27 NLKPSQTLYVKNLNTKINKKILLHNLYLLFSAFG---DIISINLQ--NGFAFIIFSNLNS 81
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE 115
A+ A+R ++N F+DKP+ + YA +S ++ +EK+K Q+E E
Sbjct: 82 ATLALRNLKNQDFFDKPLVLNYAVKESKAIS--------QEKQKLQDENDE 124
>gi|425868376|gb|AFY04320.1| sans fille, partial [Bibio longipes]
Length = 96
Score = 76.6 bits (187), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 42/51 (82%)
Query: 51 LRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+RGQA+V+F E+++A+NA+R MQ FPFYDKPMRI Y+K SD +AK G+F
Sbjct: 1 MRGQAFVIFKEISSATNALRTMQGFPFYDKPMRISYSKCDSDVIAKIKGTF 51
>gi|363748204|ref|XP_003644320.1| hypothetical protein Ecym_1261 [Eremothecium cymbalariae
DBVPG#7215]
gi|356887952|gb|AET37503.1| hypothetical protein Ecym_1261 [Eremothecium cymbalariae
DBVPG#7215]
Length = 113
Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 57/84 (67%), Gaps = 2/84 (2%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y+ NLN++IK E LK +LY +FS +G + + + KLRGQA+V V A+
Sbjct: 29 PRSTLYVSNLNDQIKLEALKSNLYLIFSTFGEVLKISM--SAKLRGQAFVTLKTVDEANL 86
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS 91
A+ +++ PF+ KP++IQ++KS++
Sbjct: 87 AMISLRDEPFFGKPLKIQFSKSET 110
>gi|344301982|gb|EGW32287.1| hypothetical protein SPAPADRAFT_153008 [Spathaspora passalidarum
NRRL Y-27907]
Length = 135
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 37/95 (38%), Positives = 64/95 (67%), Gaps = 5/95 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ P+Q +YIKNLN+KI ++ LK +LY LFS +G DV+ ++ K G A V+F ++ +
Sbjct: 26 NLKPSQCLYIKNLNDKINRQLLKHNLYLLFSTFG---DVIEIRIRK--GFAHVLFGDIPS 80
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDG 99
A+ A+R +Q+ F+DKP+ I Y+ ++S + + G
Sbjct: 81 ATVALRSLQSEEFFDKPLVINYSVNESKVITRLSG 115
>gi|68465088|ref|XP_723243.1| hypothetical protein CaO19.12210 [Candida albicans SC5314]
gi|46445270|gb|EAL04539.1| hypothetical protein CaO19.12210 [Candida albicans SC5314]
Length = 131
Score = 76.3 bits (186), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 63/93 (67%), Gaps = 5/93 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ P+QT+Y+KNLN KI K+ L +LY LFS +G D++++ G A+++FS + +
Sbjct: 27 NLKPSQTLYVKNLNTKINKKILLHNLYLLFSAFG---DIISINLQ--NGFAFIIFSNLNS 81
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKE 97
A+ A+R ++N F+DKP+ + YA +S +++E
Sbjct: 82 ATLALRNLKNQDFFDKPLVLNYAVKESKVISQE 114
>gi|366988781|ref|XP_003674158.1| hypothetical protein NCAS_0A12190 [Naumovozyma castellii CBS 4309]
gi|342300021|emb|CCC67777.1| hypothetical protein NCAS_0A12190 [Naumovozyma castellii CBS 4309]
Length = 113
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/89 (40%), Positives = 56/89 (62%), Gaps = 1/89 (1%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
I P T+Y+ NL+EKI + L+ +L+ LFS YG + V A+ K RGQA++ V A
Sbjct: 26 IDPKNTLYVNNLDEKINTKRLRTNLFLLFSIYGEVLKV-AISAKKQRGQAFITMRTVDEA 84
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCV 94
+ A+ + N PF+DKP+ IQ++K+ S +
Sbjct: 85 NLALISLNNEPFFDKPLHIQFSKTNSYII 113
>gi|238878692|gb|EEQ42330.1| conserved hypothetical protein [Candida albicans WO-1]
Length = 131
Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 63/93 (67%), Gaps = 5/93 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ P+QT+Y+KNLN KI K+ L +LY LFS +G D++++ G A+++FS + +
Sbjct: 27 NLKPSQTLYVKNLNTKINKKILLHNLYLLFSAFG---DIISINLQ--NGFAFIIFSNLNS 81
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKE 97
A+ A+R ++N F+DKP+ + YA +S +++E
Sbjct: 82 ATLALRNLKNQDFFDKPLVLNYAVKESKVISQE 114
>gi|123430856|ref|XP_001307983.1| hypothetical protein [Trichomonas vaginalis G3]
gi|121889640|gb|EAX95053.1| hypothetical protein TVAG_428560 [Trichomonas vaginalis G3]
Length = 186
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 38/100 (38%), Positives = 64/100 (64%), Gaps = 1/100 (1%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
I P+QT++++NL +KI ++LKR+LY LFS + ++ A K + RGQAWV F + +A
Sbjct: 5 IAPSQTLFVRNLTDKIPIDDLKRNLYYLFSSVAPVVEINARKG-QSRGQAWVSFPNLESA 63
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPRE 105
++Q NFPF K ++I+Y+K+ S + + +F R+
Sbjct: 64 EIIMKQFNNFPFLGKALQIEYSKNPSKSLEEFYNAFSTRQ 103
>gi|426198267|gb|EKV48193.1| hypothetical protein AGABI2DRAFT_56767, partial [Agaricus
bisporus var. bisporus H97]
Length = 76
Score = 74.7 bits (182), Expect = 3e-11, Method: Composition-based stats.
Identities = 37/75 (49%), Positives = 57/75 (76%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P+ T+Y+ NLN+ + KEEL+ LY LF+ +G+I D+VA KT K+RGQA++VF+++ AA+
Sbjct: 1 PSPTLYLNNLNDHVNKEELRTQLYALFTTHGKIIDIVASKTQKMRGQAFLVFADLAAATA 60
Query: 68 AVRQMQNFPFYDKPM 82
A+R + FYDKP+
Sbjct: 61 AMRACEGMIFYDKPL 75
>gi|255728035|ref|XP_002548943.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
gi|240133259|gb|EER32815.1| conserved hypothetical protein [Candida tropicalis MYA-3404]
Length = 142
Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 37/101 (36%), Positives = 62/101 (61%), Gaps = 5/101 (4%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ P QT+Y+KNLN KI K+ + +LY L S +G DV+++ RG A+V+F+ +
Sbjct: 28 NLKPMQTLYVKNLNTKINKQIMIHNLYLLLSAFG---DVISINLK--RGFAFVIFASTNS 82
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPRE 105
AS A+R +QN F+DKP+ + YA +S +++ + E
Sbjct: 83 ASLALRTLQNEEFFDKPLVLNYAVKESKLISRAKNEILRNE 123
>gi|47156946|gb|AAT12330.1| U1 small ribonucleoprotein [Antonospora locustae]
Length = 175
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/195 (29%), Positives = 80/195 (41%), Gaps = 52/195 (26%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P +T+Y +NLNEK+ K EL R L L S+Y + DV T +LRGQA+V F A+
Sbjct: 5 PCRTLYFQNLNEKMNKSELARRLKMLVSRYAYVVDVTIWNTMRLRGQAFVTFKTTDDAAK 64
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
+ NF F M+I +AK V R K KQE
Sbjct: 65 IKSILDNFFFLGTSMKIHFAKK------------VSRRYKTKQE---------------- 96
Query: 128 MANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVR 187
FR P L IQ L + +S++LE +F+ G +R
Sbjct: 97 --------------LVFR---------PTKTLVIQKLGNNISSAVLEAVFKDEKGVIRIR 133
Query: 188 MIEAKPGIAFVEFED 202
+ K IA ++F D
Sbjct: 134 HVPVKK-IALIDFID 147
>gi|58263368|ref|XP_569094.1| hypothetical protein CNB00870 [Cryptococcus neoformans var.
neoformans JEC21]
gi|134108606|ref|XP_776956.1| hypothetical protein CNBB4840 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|50259639|gb|EAL22309.1| hypothetical protein CNBB4840 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57223744|gb|AAW41787.1| hypothetical protein CNB00870 [Cryptococcus neoformans var.
neoformans JEC21]
Length = 282
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 48/73 (65%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P+ T+Y+ L K KK EL++ LY LFS YGR+ DVVA K RGQA+VVF E AA+
Sbjct: 25 PSPTLYVSGLETKTKKPELRQQLYALFSPYGRVIDVVAKKHDGGRGQAFVVFEEQVAATA 84
Query: 68 AVRQMQNFPFYDK 80
A+R + FY++
Sbjct: 85 ALRGLTGETFYNR 97
>gi|425868437|gb|AFY04348.1| sans fille, partial [Chamaepsila hennigi]
Length = 96
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 46/108 (42%), Positives = 61/108 (56%), Gaps = 12/108 (11%)
Query: 52 RGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQE 111
RGQA+ F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD AK G+F R KK K
Sbjct: 1 RGQAFRHFQEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDXXAKIKGTFKERPKKAKIP 60
Query: 112 EKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNIL 159
+ A+ E ++ T +++ N+N+Q PN IL
Sbjct: 61 KPAQ----TPEEKKDKKKKVTNSENT--------NSNSQTEQPPNQIL 96
>gi|425868407|gb|AFY04334.1| sans fille, partial [Lonchoptera uniseta]
Length = 91
Score = 74.3 bits (181), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 41/55 (74%)
Query: 53 GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK 107
GQA+V+F E +ASNA R MQ FPFYDKPMRI Y+K+ SD VAK G+F R KK
Sbjct: 1 GQAFVIFKEXXSASNARRTMQGFPFYDKPMRIAYSKTDSDIVAKIKGTFKERPKK 55
>gi|407923615|gb|EKG16684.1| hypothetical protein MPH_06138 [Macrophomina phaseolina MS6]
Length = 117
Score = 73.9 bits (180), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 41/113 (36%), Positives = 62/113 (54%), Gaps = 5/113 (4%)
Query: 120 AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQ 179
AE + + A G G +S GG AA + E PN ILF+QNLP L +F +
Sbjct: 9 AESNRPTQKARGAGLKSTGGAAAVIPD----EYLPPNKILFVQNLPDGYDVEALSAIFGR 64
Query: 180 YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAITFAKK 231
+ GFKEVR++ + GIAFVE+E + + A +A G + + PM +T+ ++
Sbjct: 65 FEGFKEVRLVPGRSGIAFVEYEAEAGAISAKEATAGMALGDEGKPMKVTYQRQ 117
>gi|380746090|gb|AFE47978.1| sans fille, partial [Drosophila mayaguana]
Length = 93
Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 48/107 (44%), Positives = 61/107 (57%), Gaps = 16/107 (14%)
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE--RKRRAE 121
+ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R KK K + +++ +
Sbjct: 1 SASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGVEEKKDK 60
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
+ +QSS N N NTQ PN ILF+ NLP ET
Sbjct: 61 KKKQSSAENA--------------NPNTQTEQPPNQILFLTNLPEET 93
>gi|380746184|gb|AFE48025.1| sans fille, partial [Drosophila bifurca]
Length = 92
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 55/104 (52%), Gaps = 12/104 (11%)
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ ER ++ + +
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY------------KERPKKVKPPK 48
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
+ ++A N NTQ PN ILF+ NLP ET
Sbjct: 49 PVPGVEEKKDKKKKQSSAENSNPNTQTEQPPNQILFLTNLPEET 92
>gi|302406697|ref|XP_003001184.1| U1 small nuclear ribonucleoprotein A [Verticillium albo-atrum
VaMs.102]
gi|261359691|gb|EEY22119.1| U1 small nuclear ribonucleoprotein A [Verticillium albo-atrum
VaMs.102]
Length = 92
Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 29/82 (35%), Positives = 55/82 (67%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
P T+Y++NL E++K + LK SL +FS+YG + +++A K +GQA++VF + +A
Sbjct: 5 PSIATVYVRNLEERVKIDVLKESLLQIFSEYGNVLEIIAKTNLKSKGQAFIVFDDADSAQ 64
Query: 67 NAVRQMQNFPFYDKPMRIQYAK 88
NA+ ++Q F +DK ++++ +
Sbjct: 65 NAIDEVQGFELFDKQCKLRWLR 86
>gi|296423050|ref|XP_002841069.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295637301|emb|CAZ85260.1| unnamed protein product [Tuber melanosporum]
Length = 164
Score = 73.6 bits (179), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 50/135 (37%), Positives = 74/135 (54%), Gaps = 15/135 (11%)
Query: 82 MRIQYAKSKSDCVAKEDGSFVPRE-KKKKQEEKAERKRR----AEEAQQSS-------MA 129
M + +AKS+SD K + +E + K+ AER+R+ A E+Q+ + +
Sbjct: 1 MVLAFAKSRSDATVKREAGEDSQEFEAHKRRRLAERERKQALAALESQRHASTTAAPQVD 60
Query: 130 NGTGAQSNGGTAASFRNANTQ---ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEV 186
+ + +GG ++ A Q E PN+ LF+QNLP ET S L LF ++ GFKEV
Sbjct: 61 SAKATKKSGGLKSTAPAAAPQIPDEYLPPNSTLFLQNLPDETDSDTLTSLFGRFDGFKEV 120
Query: 187 RMIEAKPGIAFVEFE 201
RM+ + GIAFVEFE
Sbjct: 121 RMVPGRKGIAFVEFE 135
>gi|380746096|gb|AFE47981.1| sans fille, partial [Drosophila mojavensis]
Length = 92
Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 48/106 (45%), Positives = 60/106 (56%), Gaps = 16/106 (15%)
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE--RKRRAEE 122
ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R KK K + +++ ++
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGVEEKKDKK 60
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHET 168
+QSS N N NTQ PN ILF+ NLP ET
Sbjct: 61 KKQSSAENA--------------NPNTQTEQPPNQILFLTNLPEET 92
>gi|260944630|ref|XP_002616613.1| hypothetical protein CLUG_03854 [Clavispora lusitaniae ATCC 42720]
gi|238850262|gb|EEQ39726.1| hypothetical protein CLUG_03854 [Clavispora lusitaniae ATCC 42720]
Length = 113
Score = 73.2 bits (178), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
QT+Y+ NLN+KI + LK ++Y LFS YG ++D+ KLRGQA V+ AS +
Sbjct: 23 QTLYVNNLNDKINRTLLKHNIYILFSTYGEVWDI----NMKLRGQAHVIMDSKETASVCL 78
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCV 94
+ + P + K +RI ++K+KS V
Sbjct: 79 KALSGIPMFGKHLRIDFSKNKSKSV 103
>gi|72387031|ref|XP_843940.1| U2 small nuclear ribonucleoprotein B [Trypanosoma brucei TREU927]
gi|62175534|gb|AAX69673.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
brucei]
gi|70800472|gb|AAZ10381.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
brucei brucei strain 927/4 GUTat10.1]
gi|261327055|emb|CBH10031.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
brucei gambiense DAL972]
Length = 117
Score = 73.2 bits (178), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 34/84 (40%), Positives = 55/84 (65%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P QT+YI+ L +K EE++R LY +Q+G + DV+ K+ + GQA+VVF++V A+N
Sbjct: 4 PKQTLYIRGLPDKPSAEEVRRLLYLYCTQFGPVIDVLYCKSKSMYGQAFVVFTDVATATN 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS 91
A R++ FY + ++ YAK +S
Sbjct: 64 ARRELHERQFYGRIIQAFYAKRQS 87
>gi|209878378|ref|XP_002140630.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
gi|209556236|gb|EEA06281.1| RNA recognition motif. family protein [Cryptosporidium muris RN66]
Length = 304
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/99 (33%), Positives = 58/99 (58%), Gaps = 6/99 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN T+Y+ NLN+++ EL+++L F +G I ++ +K+ RGQAW+ F ++ AS
Sbjct: 17 PNCTLYVNNLNDRVPTTELEKNLLQKFGNFGEIVNITCMKSFYRRGQAWITFKDIETASK 76
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK 106
A+ +Q ++KP+R +A + S GS VP ++
Sbjct: 77 ALTAIQGVNMFNKPIRAAFAHTTS------YGSSVPAKR 109
>gi|425868399|gb|AFY04330.1| sans fille, partial [Exeretonevra angustifrons]
Length = 93
Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 43/57 (75%)
Query: 53 GQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
G+ +++F E+ +ASNA+R MQ FPFYDKPMRI Y+K+ SD +A+ G+F R KK K
Sbjct: 1 GRRFLIFKEIGSASNALRTMQGFPFYDKPMRIAYSKTDSDIIARMKGTFKERPKKIK 57
>gi|432117207|gb|ELK37643.1| U1 small nuclear ribonucleoprotein A [Myotis davidii]
Length = 133
Score = 70.5 bits (171), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 40/95 (42%), Positives = 61/95 (64%), Gaps = 3/95 (3%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P+ T+YI NLNEKI+K ELK+SLY LFSQ+G+I ++++ ++ K+R Q + S+ TAA
Sbjct: 39 PSLTVYINNLNEKIRKNELKKSLYTLFSQFGQILNILS-QSLKMRAQ-HLSSSKRTAAPG 96
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
+ PF + YA + SD +A+ G+FV
Sbjct: 97 PCAPCRR-PFLQQTHAPPYANTDSDIIAEMKGTFV 130
>gi|392576387|gb|EIW69518.1| hypothetical protein TREMEDRAFT_24129, partial [Tremella
mesenterica DSM 1558]
Length = 76
Score = 70.5 bits (171), Expect = 5e-10, Method: Composition-based stats.
Identities = 36/75 (48%), Positives = 49/75 (65%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P+ T++I NL K KK EL+ LY LF+ +G++ DVVA K RGQA+VVF E AA+
Sbjct: 1 PSPTLFITNLETKTKKIELRSQLYALFTPFGKVIDVVAKKHGGGRGQAFVVFEEQAAATA 60
Query: 68 AVRQMQNFPFYDKPM 82
A+R + PFY K +
Sbjct: 61 ALRGLHGEPFYSKEL 75
>gi|259016061|gb|ACV89312.1| sans fille [Panorpa sp. BMW-2009]
Length = 52
Score = 70.1 bits (170), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 41/52 (78%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
+F E+ +++NA+R MQ FPFYDKPMRIQY+K+ SD +AK G+F R KK+K
Sbjct: 1 IFKEIPSSTNALRSMQGFPFYDKPMRIQYSKTDSDVIAKMKGTFQERPKKQK 52
>gi|380746074|gb|AFE47970.1| sans fille, partial [Drosophila buzzatii]
gi|380746118|gb|AFE47992.1| sans fille, partial [Drosophila starmeri]
gi|380746126|gb|AFE47996.1| sans fille, partial [Drosophila moju]
gi|380746160|gb|AFE48013.1| sans fille, partial [Drosophila venezolana]
Length = 93
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 41/104 (39%), Positives = 57/104 (54%), Gaps = 12/104 (11%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ +++ K+ + +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY---KERPKKVKPPKPV 57
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFI 161
EE + + S N NTQ PN ILF+
Sbjct: 58 PGVEEKKDKKKKQSSAENS---------NPNTQTEQPPNQILFL 92
>gi|380746138|gb|AFE48002.1| sans fille, partial [Drosophila aldrichi]
Length = 93
Score = 69.7 bits (169), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 45/106 (42%), Positives = 60/106 (56%), Gaps = 16/106 (15%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE-- 115
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R KK K +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGV 60
Query: 116 RKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFI 161
+++ ++ +QSS N N NTQ PN ILF+
Sbjct: 61 EEKKDKKKKQSSAENA--------------NPNTQTEQPPNQILFL 92
>gi|71416262|ref|XP_810168.1| U2 small nuclear ribonucleoprotein B [Trypanosoma cruzi strain CL
Brener]
gi|71662225|ref|XP_818122.1| U2 small nuclear ribonucleoprotein B [Trypanosoma cruzi strain CL
Brener]
gi|70874662|gb|EAN88317.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
cruzi]
gi|70883355|gb|EAN96271.1| U2 small nuclear ribonucleoprotein B, putative [Trypanosoma
cruzi]
Length = 114
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/84 (38%), Positives = 57/84 (67%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P QT+YI+ L +K+ ++E++R+LY +Q+G + +V K+ + GQA+VVFS+V A++
Sbjct: 4 PKQTLYIRGLPDKVSEKEMRRALYLYCTQFGPVLEVSYRKSRDMYGQAFVVFSDVATATS 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS 91
A R++ FY + ++ YAK +S
Sbjct: 64 ARRELNERQFYGRLVQAFYAKRQS 87
>gi|425868395|gb|AFY04328.1| sans fille, partial [Oreogeton scopifer]
Length = 83
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 38/46 (82%)
Query: 56 WVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+++F E+++ASNA+R MQ FPFYDKPMRI YAK+ SD VAK G+F
Sbjct: 1 FLIFKEISSASNALRTMQGFPFYDKPMRIAYAKTDSDVVAKIKGTF 46
>gi|431891771|gb|ELK02305.1| U1 small nuclear ribonucleoprotein A [Pteropus alecto]
Length = 105
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 44/58 (75%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPF 77
KIKK+ELK+SLY +FSQ+G+I D++ ++ K+ GQA+ F EV+ +NA+ +Q FPF
Sbjct: 48 KIKKDELKKSLYAIFSQFGQILDILVSRSLKMSGQAFAAFKEVSNTTNALHSLQGFPF 105
>gi|380746154|gb|AFE48010.1| sans fille, partial [Drosophila borborema]
Length = 93
Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 43/104 (41%), Positives = 57/104 (54%), Gaps = 12/104 (11%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ +E+ KK +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY--KERPKKVKPPKPVP 58
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFI 161
E+ + N +A N NTQ PN ILF+
Sbjct: 59 GVEEKKDKKKKQN----------SAENANPNTQTEQPPNQILFL 92
>gi|66363386|ref|XP_628659.1| U1 small nuclear ribonucleoprotein A, rrm domain [Cryptosporidium
parvum Iowa II]
gi|46229837|gb|EAK90655.1| U1 small nuclear ribonucleoprotein A, rrm domain [Cryptosporidium
parvum Iowa II]
Length = 122
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/85 (40%), Positives = 50/85 (58%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
P N+T+Y KNLN+KI K++LK L+ LF Q+G I + RGQA+++F ++ A
Sbjct: 14 PANKTLYCKNLNDKINKKDLKILLFELFIQFGLIDKITIRGGSPYRGQAFILFQDLNCAI 73
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKS 91
NA + KP+ I+YAK S
Sbjct: 74 NAKNSINGMNVLGKPIHIEYAKENS 98
>gi|255717014|ref|XP_002554788.1| KLTH0F13816p [Lachancea thermotolerans]
gi|238936171|emb|CAR24351.1| KLTH0F13816p [Lachancea thermotolerans CBS 6340]
Length = 124
Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/92 (36%), Positives = 56/92 (60%), Gaps = 2/92 (2%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
I P +T+Y+ NLN+KIK + L+ +LY LFS YG + + + K RGQA++V A
Sbjct: 31 ISPKKTLYVNNLNDKIKVQTLRENLYLLFSTYGEVLQINV--SNKNRGQAFIVLRTPDEA 88
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKE 97
+ A+ +Q F++K + IQ+++ S VA +
Sbjct: 89 NVAMISLQKETFFEKELHIQFSRQDSKLVASD 120
>gi|344230515|gb|EGV62400.1| hypothetical protein CANTEDRAFT_109340 [Candida tenuis ATCC 10573]
Length = 126
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/89 (37%), Positives = 57/89 (64%), Gaps = 1/89 (1%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVAL-KTPKLRGQAWVVFSEVTAASN 67
+QT+YI+NLN+KI E + +LY L + +G + D++ K+ ++RGQA VVFS +T A
Sbjct: 28 SQTLYIQNLNDKISPETTRANLYLLCTSFGDVIDIIIKPKSKRMRGQAHVVFSNITEAQV 87
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAK 96
A+ ++Q F+ K ++ +A KS + +
Sbjct: 88 ALTRLQEQKFFGKSIKAAFAHKKSKLIKR 116
>gi|380746102|gb|AFE47984.1| sans fille, partial [Drosophila nigricruria]
Length = 93
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 44/106 (41%), Positives = 60/106 (56%), Gaps = 16/106 (15%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE-- 115
+F E+ +ASNA+R MQ FPFYDKPMRI Y+K+ SD VAK G++ R KK K +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKADSDIVAKLKGTYKERPKKVKPPKPVPGV 60
Query: 116 RKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFI 161
+++ ++ +QSS N N NTQ PN ILF+
Sbjct: 61 EEKKDKKKKQSSAENA--------------NPNTQTEQPPNQILFL 92
>gi|209878161|ref|XP_002140522.1| RNA recognition motif. family protein [Cryptosporidium muris
RN66]
gi|209556128|gb|EEA06173.1| RNA recognition motif. family protein [Cryptosporidium muris
RN66]
Length = 103
Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/93 (37%), Positives = 55/93 (59%), Gaps = 2/93 (2%)
Query: 1 MITG--DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVV 58
+++G D N+T+Y KNLN+K+ K++L+ LY LF QYG I ++ RGQA+V+
Sbjct: 5 LVSGNEDTFVNKTLYCKNLNDKVNKKDLRVILYELFIQYGTILKIIVKGGCNNRGQAFVL 64
Query: 59 FSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKS 91
F + +A A+ + KP+ I+YAK S
Sbjct: 65 FDNLNSAIEALNNVNGRVILGKPIVIEYAKKDS 97
>gi|389593827|ref|XP_003722162.1| conserved hypothetical protein [Leishmania major strain Friedlin]
gi|321438660|emb|CBZ12419.1| conserved hypothetical protein [Leishmania major strain Friedlin]
Length = 114
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 36/113 (31%), Positives = 67/113 (59%), Gaps = 7/113 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P QT+YI+ L +K E++R+LY +Q+G + V+ K+ + GQA+VVF++V A+
Sbjct: 4 PKQTLYIRGLPDKSSANEVRRALYLYCTQFGPVKAVLYSKSKEFYGQAFVVFTDVGTATT 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
A R + + FY + ++ YA ++ CVA P E++++ + +++ RA
Sbjct: 64 ARRSLHDRMFYGRRIQAFYAHKQAFCVA-------PGERRRRDLAREKKRLRA 109
>gi|154340964|ref|XP_001566435.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134063758|emb|CAM39946.1| conserved hypothetical protein [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 114
Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 39/118 (33%), Positives = 68/118 (57%), Gaps = 9/118 (7%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P QT+YI+ L +K E++R+LY +Q+G + V+ K+ + GQA+VVF++V A+
Sbjct: 4 PKQTLYIRGLPDKSSANEVRRALYLYCTQFGPVKAVLYSKSKEFYGQAFVVFTDVGTATT 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
A R + + FY + ++ YA ++ CVA P E++++ + A K+R QQ
Sbjct: 64 ARRSLHDRMFYGRQIQAFYAHKQAFCVA-------PGERRRR--DLAREKKRLRTLQQ 112
>gi|425868429|gb|AFY04344.1| sans fille, partial [Glossina morsitans]
Length = 87
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/47 (65%), Positives = 36/47 (76%)
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK 107
E+ +ASNA+R MQ FPFYDKPMRI YAK+ SD VAK G+F R KK
Sbjct: 2 EIASASNALRTMQGFPFYDKPMRIAYAKTDSDMVAKIKGTFKERPKK 48
>gi|380746128|gb|AFE47997.1| sans fille, partial [Drosophila canalinea]
Length = 91
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/103 (38%), Positives = 57/103 (55%), Gaps = 12/103 (11%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ +++ K+ + +
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY---KERPKKVKPPKPL 57
Query: 118 RRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILF 160
EE + + + + N NTQ PN ILF
Sbjct: 58 PGVEEKKDKKKKHSSTENA---------NPNTQTEQPPNQILF 91
>gi|380746132|gb|AFE47999.1| sans fille, partial [Drosophila aracataca]
Length = 75
Score = 66.2 bits (160), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 44
>gi|406603930|emb|CCH44563.1| U1 small nuclear ribonucleoprotein [Wickerhamomyces ciferrii]
Length = 112
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/84 (33%), Positives = 53/84 (63%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T++I NLN+ I + LK +LY LF+ +G + ++ KLRGQA++VF++ +A+ A+R
Sbjct: 22 TLHISNLNDNIHYDTLKHNLYILFTTFGDVLEINIPGNNKLRGQAFIVFTDPKSANIAMR 81
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCV 94
+Q F+ K ++ ++ +S +
Sbjct: 82 SLQGDEFFGKKLKFDFSHEESKVL 105
>gi|146092995|ref|XP_001466609.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|398018689|ref|XP_003862509.1| hypothetical protein, conserved [Leishmania donovani]
gi|401415958|ref|XP_003872474.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|134070972|emb|CAM69649.1| conserved hypothetical protein [Leishmania infantum JPCM5]
gi|322488698|emb|CBZ23945.1| conserved hypothetical protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322500739|emb|CBZ35816.1| hypothetical protein, conserved [Leishmania donovani]
Length = 114
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 35/112 (31%), Positives = 66/112 (58%), Gaps = 7/112 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P QT+YI+ L +K E++R+LY +Q+G + V+ K+ + GQA+VVF++V A+
Sbjct: 4 PKQTLYIRGLPDKSSANEVRRALYLYCTQFGPVKAVLYSKSKEFYGQAFVVFTDVGTATT 63
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRR 119
A R + + FY + ++ YA ++ CVA P E++++ + +++ R
Sbjct: 64 ARRSLHDRMFYGRRIQAFYAHKQAFCVA-------PGERRRRDLAREKKRLR 108
>gi|380746188|gb|AFE48027.1| sans fille, partial [Drosophila pegasa]
Length = 89
Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 35/44 (79%)
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++
Sbjct: 1 IFKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 44
>gi|321252443|ref|XP_003192407.1| hypothetical protein CGB_B8090C [Cryptococcus gattii WM276]
gi|317458875|gb|ADV20620.1| Hypothetical protein CGB_B8090C [Cryptococcus gattii WM276]
Length = 262
Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 49/73 (67%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P+ T+Y+ L K KK+ELK+ LY LFS YGR+ DVVA K RGQA+VVF E AA+
Sbjct: 7 PSPTLYVSGLETKTKKQELKQQLYALFSPYGRVIDVVAKKHDGGRGQAFVVFEEQVAATA 66
Query: 68 AVRQMQNFPFYDK 80
A+R + FY+K
Sbjct: 67 ALRALTGETFYNK 79
>gi|425868389|gb|AFY04325.1| sans fille, partial [Tipula abdominalis]
Length = 88
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/47 (57%), Positives = 36/47 (76%), Gaps = 1/47 (2%)
Query: 55 AWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
W+ F E+ +A NA++ MQ FPFYDKP+RIQY+KS SD +AK G+F
Sbjct: 1 VWI-FKEIASAXNALKTMQGFPFYDKPLRIQYSKSDSDVIAKIKGTF 46
>gi|380746152|gb|AFE48009.1| sans fille, partial [Drosophila fulvimacula]
Length = 87
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 29/46 (63%), Positives = 35/46 (76%)
Query: 59 FSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPR 104
F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R
Sbjct: 1 FKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 46
>gi|109157111|pdb|2A3J|A Chain A, Structure Of Urndesign, A Complete Computational Redesign
Of Human U1a Protein
Length = 127
Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/94 (35%), Positives = 53/94 (56%), Gaps = 1/94 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P+Q + I N+N ++ KE+L+ LY L S G I D+V + G+A++VF+ +A
Sbjct: 28 PSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQA 87
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
V Q +PF P+ I ++++ VA EDGS
Sbjct: 88 FVEAFQGYPFQGNPLVITFSETPQSQVA-EDGSL 120
>gi|149246852|ref|XP_001527851.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|146447805|gb|EDK42193.1| conserved hypothetical protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 176
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/91 (36%), Positives = 57/91 (62%), Gaps = 5/91 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ P+ T+++KNL+ K K+ L +LY LFS +G DV+++K K A++ F V +
Sbjct: 38 NLKPSHTLFVKNLDNKANKQSLVHNLYILFSAFG---DVISIKLYKC--YAFIAFGLVES 92
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVA 95
A A+R +Q F+++P++I YA +S VA
Sbjct: 93 AKLALRSLQEEEFFERPLKIGYALKESKVVA 123
>gi|365981947|ref|XP_003667807.1| hypothetical protein NDAI_0A04070 [Naumovozyma dairenensis CBS 421]
gi|343766573|emb|CCD22564.1| hypothetical protein NDAI_0A04070 [Naumovozyma dairenensis CBS 421]
Length = 113
Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/86 (38%), Positives = 51/86 (59%), Gaps = 1/86 (1%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
I P T+Y+ NLNEKI + L+ +LY LFS YG + VA+ K RGQA++ V A
Sbjct: 26 ISPRSTLYVSNLNEKINPKRLRINLYLLFSIYGEVIK-VAISAKKQRGQAYITMKNVDEA 84
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKS 91
+ A + + F++ P+ I+++K S
Sbjct: 85 NLAKISLNDELFFENPLHIEFSKEDS 110
>gi|380746178|gb|AFE48022.1| sans fille, partial [Drosophila paranaensis]
Length = 84
Score = 64.3 bits (155), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/43 (65%), Positives = 34/43 (79%)
Query: 59 FSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
F E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++
Sbjct: 1 FKEIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY 43
>gi|380746114|gb|AFE47990.1| sans fille, partial [Drosophila richardsoni]
Length = 86
Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 55/99 (55%), Gaps = 16/99 (16%)
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE--RKRRAEE 122
ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R KK K + +++ ++
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKERPKKVKPPKPVPGVEEKKDKK 60
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFI 161
+QSS N N NTQ PN ILF+
Sbjct: 61 KKQSSAENA--------------NPNTQTEQPPNQILFL 85
>gi|380746176|gb|AFE48021.1| sans fille, partial [Drosophila pachuca]
Length = 86
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 43/99 (43%), Positives = 55/99 (55%), Gaps = 16/99 (16%)
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE--RKRRAEE 122
ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R KK K + +++ ++
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKMKGTYKERPKKVKPPKPVPGVEEKKDKK 60
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFI 161
+QSS N N NTQ PN ILF+
Sbjct: 61 KKQSSAENA--------------NPNTQTEQPPNQILFL 85
>gi|425868422|gb|AFY04341.1| sans fille, partial [Phytomyza ilicicola]
Length = 84
Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 30/47 (63%), Positives = 34/47 (72%)
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKK 107
E+ +AS A+R MQ FPFYDKPMRI YAK SD VAK G+F R KK
Sbjct: 2 EIASASTALRTMQGFPFYDKPMRIAYAKGDSDVVAKIKGTFKERPKK 48
>gi|380746112|gb|AFE47989.1| sans fille, partial [Drosophila repleta]
Length = 89
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 54/100 (54%), Gaps = 12/100 (12%)
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAE 121
+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ +++ K+ + + E
Sbjct: 1 IGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTY---KERPKKVKPPKPAPGVE 57
Query: 122 EAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFI 161
E + + S N NTQ PN ILF+
Sbjct: 58 EKKDKKKKQSSAENS---------NPNTQTEQPPNQILFL 88
>gi|380746086|gb|AFE47976.1| sans fille, partial [Drosophila leonis]
Length = 86
Score = 62.8 bits (151), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 28/44 (63%), Positives = 34/44 (77%)
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPR 104
E+ +ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R
Sbjct: 1 EIGSASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 44
>gi|50293545|ref|XP_449184.1| hypothetical protein [Candida glabrata CBS 138]
gi|49528497|emb|CAG62154.1| unnamed protein product [Candida glabrata]
Length = 118
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/84 (35%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+YI+NLNEKI + L+ L+ LFS YG + V + LR QA++ V AS
Sbjct: 32 PKNTLYIRNLNEKINTKRLRHGLFMLFSIYGEVLKVT-INFKALRAQAFITLRSVEEASL 90
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS 91
A ++ F++ P+ I+++K+ +
Sbjct: 91 AKAALEGEVFFNIPLSIEFSKANT 114
>gi|156057559|ref|XP_001594703.1| hypothetical protein SS1G_04511 [Sclerotinia sclerotiorum 1980]
gi|154702296|gb|EDO02035.1| hypothetical protein SS1G_04511 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 144
Score = 62.4 bits (150), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/51 (50%), Positives = 38/51 (74%)
Query: 51 LRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+RGQA +V+ ++ A+ A+R +Q F F + M+IQYAKSKSD +AK DG+F
Sbjct: 1 MRGQAHIVYRDIQTATQAMRALQGFEFLGREMKIQYAKSKSDTIAKLDGTF 51
>gi|328866616|gb|EGG14999.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 505
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 58/227 (25%), Positives = 98/227 (43%), Gaps = 38/227 (16%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFD---VVALKTPKLRGQAWVVFSEVTA 64
P+ I+IK L +++L FS YG + + ++ + T RGQA V FSEV +
Sbjct: 238 PSNNIFIKGLPTTFTQDQLN----TFFSTYGIVLESKVLLDIATNASRGQALVRFSEVES 293
Query: 65 ASNAVRQMQN--FPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
A+ A++ + N FP DKP+ I+YA S+ D + K +KA KR+
Sbjct: 294 ATKAIKALDNYKFPGSDKPVIIKYADSEDDKILK--------------RQKATSKRQPIR 339
Query: 123 AQQSSMANGTG---------AQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSML 173
N T +Q + + ++ + P N L++ NLP + ++L
Sbjct: 340 YSPYPSPNATPSLYSPAAYYSQMAMPSLPTIQSPILSTGSDPTN-LYVYNLPTDADDALL 398
Query: 174 EMLFQQYPGFKEVRMI-----EAKPGIAFVEFEDDVQSSMAMQALQG 215
LF V+++ +A G FV + S A+ ++ G
Sbjct: 399 YRLFSPSGAIASVKVVKDPITQACRGFGFVRMVNLTDSLNAINSVNG 445
>gi|154323986|ref|XP_001561307.1| hypothetical protein BC1G_00392 [Botryotinia fuckeliana B05.10]
Length = 142
Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/54 (53%), Positives = 39/54 (72%), Gaps = 1/54 (1%)
Query: 51 LRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF-VP 103
+RGQA VV+ ++ A+ A+R +Q F F + M IQYAKSKSD +AK DG+F VP
Sbjct: 1 MRGQAHVVYRDIQTATQAMRALQGFEFLGREMNIQYAKSKSDTIAKLDGTFRVP 54
>gi|340503108|gb|EGR29728.1| u1 small nuclear ribonucleoprotein a, putative [Ichthyophthirius
multifiliis]
Length = 149
Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 33/100 (33%), Positives = 52/100 (52%), Gaps = 9/100 (9%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPN T+Y+ NLNE +K EL L +F ++G + + A + K+RGQA++ F ++ A
Sbjct: 23 PPNNTLYVNNLNENVKINELIPELKRIFEEFGDVIQIKAKRNIKMRGQAFITFQDIPTAE 82
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREK 106
A+ Q Y K M + V K + VP++K
Sbjct: 83 KALENCQGRKLYGKQM---------ELVNKMEVRLVPQKK 113
Score = 37.0 bits (84), Expect = 6.5, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 32/46 (69%), Gaps = 2/46 (4%)
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
EVR++ K +AFVE+ED+ ++ +A+Q+L FKI N + + +AK
Sbjct: 105 EVRLVPQKK-VAFVEYEDEFKAGVALQSLSTFKIG-DNIVTVNYAK 148
>gi|396465284|ref|XP_003837250.1| hypothetical protein LEMA_P034840.1 [Leptosphaeria maculans JN3]
gi|312213808|emb|CBX93810.1| hypothetical protein LEMA_P034840.1 [Leptosphaeria maculans JN3]
Length = 184
Score = 60.5 bits (145), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 51/186 (27%), Positives = 83/186 (44%), Gaps = 29/186 (15%)
Query: 72 MQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQE-------------------- 111
M F Y K M++ AK+ SD K + + E K+K+
Sbjct: 1 MNGFEMYGKVMKVTRAKTHSDETVKRKAAELFDEHKRKRLMLKGGLLPFSHPPQLLTSAH 60
Query: 112 -----EKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH 166
+ KR E+A+ + AN T A TA + A E PN LF+QN+P
Sbjct: 61 TNPCLAPTDFKRAEEDAK--AQANPTVAAEKPRTAKTGAAAVPDEYVRPNKTLFLQNIPR 118
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMA 225
+ L +F+++ GFKEVR++ + +AF EFE++ + A +A I + PM
Sbjct: 119 DVDEETLTNVFERFEGFKEVRLVSVR-SVAFAEFENEQFAITAKEATANTPIGAEGKPMK 177
Query: 226 ITFAKK 231
+T+ ++
Sbjct: 178 VTYQRQ 183
>gi|156836884|ref|XP_001642482.1| hypothetical protein Kpol_322p1 [Vanderwaltozyma polyspora DSM
70294]
gi|156113017|gb|EDO14624.1| hypothetical protein Kpol_322p1 [Vanderwaltozyma polyspora DSM
70294]
Length = 87
Score = 60.5 bits (145), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 28/80 (35%), Positives = 52/80 (65%), Gaps = 1/80 (1%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+YI NL++ I ++L+ +L+ LFS YG + D + L +LRGQA++ S A+ A
Sbjct: 6 TLYIHNLSDGIGMDKLRSNLFLLFSMYGEVID-IRLDGRQLRGQAFIRMSTPDEANLARI 64
Query: 71 QMQNFPFYDKPMRIQYAKSK 90
+ PF+ +P++I+++K++
Sbjct: 65 TLNGEPFFGQPLKIEFSKNE 84
>gi|67539218|ref|XP_663383.1| hypothetical protein AN5779.2 [Aspergillus nidulans FGSC A4]
gi|40743682|gb|EAA62872.1| hypothetical protein AN5779.2 [Aspergillus nidulans FGSC A4]
Length = 127
Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 38/52 (73%)
Query: 51 LRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
+RGQA VVF ++ A++ A+R +Q F F+ KPM+I YAK SD +A+ G++V
Sbjct: 1 MRGQAHVVFKDIQASTQAMRALQGFEFFGKPMKIVYAKGSSDVIARLRGTYV 52
>gi|380746134|gb|AFE48000.1| sans fille, partial [Drosophila longicornis]
Length = 84
Score = 60.1 bits (144), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 41/97 (42%), Positives = 53/97 (54%), Gaps = 16/97 (16%)
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE--RKRRAEEAQ 124
NA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R KK K + +++ ++ +
Sbjct: 1 NALRTMQGFPFYDKPMRIAYSKSDSDIVAKMKGTYKERPKKVKPPKPVPGVEEKKDKKKK 60
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFI 161
QSS N N NTQ PN ILF+
Sbjct: 61 QSSAENA--------------NPNTQTEQPPNQILFL 83
>gi|380746088|gb|AFE47977.1| sans fille, partial [Drosophila mainlandi]
Length = 78
Score = 59.7 bits (143), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 27/40 (67%), Positives = 31/40 (77%)
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPR 104
ASNA+R MQ FPFYDKPMRI Y+KS SD VAK G++ R
Sbjct: 1 ASNALRTMQGFPFYDKPMRIAYSKSDSDIVAKLKGTYKER 40
>gi|164659308|ref|XP_001730778.1| hypothetical protein MGL_1777 [Malassezia globosa CBS 7966]
gi|159104676|gb|EDP43564.1| hypothetical protein MGL_1777 [Malassezia globosa CBS 7966]
Length = 119
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/120 (33%), Positives = 54/120 (45%), Gaps = 8/120 (6%)
Query: 115 ERKRRAEEAQQSSMANG----TGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTS 170
ERK+ AQQ +MA G TA + N E PN ILF+Q +P T
Sbjct: 3 ERKK----AQQEAMARGEVPSVLPTKRSSTARTQANQLPDEYVPPNRILFLQQMPATVTH 58
Query: 171 SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
L +F P +VR I + IAFVEF D S A +A G+ + ++FA+
Sbjct: 59 EELTRIFGHLPNLYQVRTIPGRTDIAFVEFHDIPSSVAAREATNGYAFPTGEHLKVSFAR 118
>gi|367017704|ref|XP_003683350.1| hypothetical protein TDEL_0H02800 [Torulaspora delbrueckii]
gi|359751014|emb|CCE94139.1| hypothetical protein TDEL_0H02800 [Torulaspora delbrueckii]
Length = 116
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 49/84 (58%), Gaps = 1/84 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+Y+ NL++ I + L +LY LFS YG + + + + RGQA++ + ++
Sbjct: 31 PKHTLYVNNLSDHIDIKRLTTNLYLLFSIYGEVIK-ITVNPRRQRGQAFITMKNIDESNL 89
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKS 91
A+ + N PF+ KP+ + +++ ++
Sbjct: 90 AIISLNNEPFFGKPLHVSFSREET 113
>gi|241949525|ref|XP_002417485.1| U2 small nuclear ribonucleoprotein B, putative [Candida
dubliniensis CD36]
gi|223640823|emb|CAX45138.1| U2 small nuclear ribonucleoprotein B, putative [Candida
dubliniensis CD36]
Length = 131
Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 37/109 (33%), Positives = 69/109 (63%), Gaps = 11/109 (10%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ P+QT+Y+KNLN KI K+ L +LY LFS +G D++++ G A+++F+ + +
Sbjct: 27 NLKPSQTLYVKNLNNKINKKVLLHNLYLLFSAFG---DIISINLH--NGYAFIIFTNLNS 81
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEK 113
A+ A+R ++N F+DKP+ + Y+ +S ++ E +EK + EE+
Sbjct: 82 ATLALRNLKNQDFFDKPLVLNYSVKESKVISHE------KEKSQDDEEE 124
>gi|323509337|dbj|BAJ77561.1| cgd6_2150 [Cryptosporidium parvum]
Length = 297
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 69/271 (25%), Positives = 104/271 (38%), Gaps = 59/271 (21%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
D N+TIYI NLN+ I + K SL +F++YG+I + + +GQAW+ FS
Sbjct: 20 SDDDENKTIYINNLNDSISIPKQKLSLEEIFAKYGKIESIKMFNSYFRKGQAWITFSNAV 79
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSD--CVAKEDGS----FVPREKKKKQE----EK 113
+A NAV + K + + +A +S+ + + S VP+ + E
Sbjct: 80 SAVNAVNNEIGTQIFGKHVNVSFAAKESERRNIQVRNSSSNIRMVPKSINARIELYKQYL 139
Query: 114 AERKRRAE-----------EAQQSSMANGTGAQSNGGTAASFRNANTQETAAP--NNIL- 159
A+ + AE E Q + N N N N + P NN L
Sbjct: 140 AQWLKNAENNGLFQTLDDPEKNQIKLVNNQVLYDNNYVNLMRSNKNKKLNVHPFINNELT 199
Query: 160 ----------------FIQNLPH--------ETTSSMLEM----------LFQQYPGFKE 185
F+ LP+ T +EM LF GFKE
Sbjct: 200 QNSLGRPEMQIDGTTSFLHRLPNNASPLEVSNTVFVQMEMGICREEELYTLFSHINGFKE 259
Query: 186 VRMIEAKPGIAFVEFEDDVQSSMAMQALQGF 216
+R I +AFV+F VQ++ + L F
Sbjct: 260 LRFI-PNHQVAFVDFFTQVQAATTISKLDNF 289
>gi|358337425|dbj|GAA28121.2| regulator of differentiation 1 [Clonorchis sinensis]
Length = 757
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 54/226 (23%), Positives = 93/226 (41%), Gaps = 32/226 (14%)
Query: 11 TIYIKNLN-EKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
+++ NLN E+I + +L+ LF YG + V L K A + ++ A AV
Sbjct: 554 VVFVSNLNQERITPD----TLFTLFGVYGDVQRVKILHNKK--DSAMIQLADCNQAQMAV 607
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMA 129
+ P Y K MR +K+ + + P K E AE
Sbjct: 608 NYLDKVPLYGKQMRCTLSKNMAVTI--------PVPGKDDSEASAEN------------I 647
Query: 130 NGTGAQSNGGTAASFRNANT---QETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK-- 184
N + G FR N Q AP+ +L I NLP + T L +F + G +
Sbjct: 648 NQLNREYIGHRLHRFRRPNARYLQNLCAPSRVLHISNLPEQVTEDDLTDVFMRVGGLQVE 707
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
V++++ +A V+ +D ++ + AL +++ M ++F+K
Sbjct: 708 AVKLVKTPKPMALVQLQDVEKAVTGLIALHDYELVDNLHMRVSFSK 753
>gi|281211458|gb|EFA85620.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 355
Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/79 (37%), Positives = 46/79 (58%), Gaps = 4/79 (5%)
Query: 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQA 212
A P+ +LFI+++P ++ E LFQ PGF +R KP AFVEF+D ++ AM+
Sbjct: 5 APPSKVLFIRDIPPSISNEQFENLFQTLPGFVSIR---RKPFFAFVEFKDSGYATSAMRR 61
Query: 213 LQGFKITPQN-PMAITFAK 230
G++ P + P+ I F K
Sbjct: 62 HNGYRHHPADKPLVIDFDK 80
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 5/79 (6%)
Query: 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI--EAKPGIAFVEFEDDVQSSMAMQALQ 214
+ LF+ NLP + T L +LF+ GF VR++ E K I F +F D + ++ AM+ L
Sbjct: 271 STLFVSNLPKDVTERELSILFRFMRGFINVRLVQREGKYPICFCDFRDTLSAAGAMEMLN 330
Query: 215 GFKITPQN---PMAITFAK 230
GFK+ ++ ++I F K
Sbjct: 331 GFKMDTKDISSSISIEFDK 349
>gi|327270620|ref|XP_003220087.1| PREDICTED: RNA-binding protein 40-like [Anolis carolinensis]
Length = 515
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/90 (35%), Positives = 60/90 (66%), Gaps = 6/90 (6%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSL--YCLFS-QYGRI-FDVVALKTPKLRGQAWVVF 59
GD PN IY+KNL++++++++LK Y FS + RI FD+ +K +++GQA++
Sbjct: 409 GD--PNCRIYVKNLSKQVQEKDLKFIFGRYVDFSSEVERIMFDIRLMKEGRMKGQAFIGL 466
Query: 60 SEVTAASNAVRQMQNFPFYDKPMRIQYAKS 89
+ AA+ A++++ + +DKPM +Q+A+S
Sbjct: 467 PDEKAATKALKEVNGYLLFDKPMVVQFARS 496
>gi|410084028|ref|XP_003959591.1| hypothetical protein KAFR_0K01000 [Kazachstania africana CBS
2517]
gi|372466183|emb|CCF60456.1| hypothetical protein KAFR_0K01000 [Kazachstania africana CBS
2517]
Length = 93
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/85 (35%), Positives = 51/85 (60%), Gaps = 3/85 (3%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+Y+ NLN K+ ++L+ +LY LFS YG + V+ K RGQA++ V A+ A+
Sbjct: 11 TLYVNNLNTKVNSKKLRVNLYLLFSIYGEVLK-VSTNFRKERGQAFITMKGVDDANLALL 69
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVA 95
+ + F+DK + +++ SK+D V
Sbjct: 70 SLNDEMFFDKKLHVEF--SKNDTVT 92
>gi|395324165|gb|EJF56611.1| RNA-binding domain-containing protein [Dichomitus squalens LYAD-421
SS1]
Length = 123
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 38/121 (31%), Positives = 64/121 (52%), Gaps = 11/121 (9%)
Query: 3 TGDIPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
T +PP N+ +++KNLN +I E+L Y LF +YG I + K +G A+VVF
Sbjct: 7 TTKLPPGANRILFVKNLNYQITGEDL----YDLFGRYGSIRQIRIGNEQKTKGTAFVVFD 62
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
+V A NA+ + F ++ + + Y +K+D + E +++EE AE KR+
Sbjct: 63 DVMDAKNALDHLNGFHLQERYIVVLYHMP-----SKQDAAAAKAELARREEELAELKRKH 117
Query: 121 E 121
+
Sbjct: 118 D 118
Score = 43.1 bits (100), Expect = 0.094, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI--EAKPGIAFVEFEDDVQSSMAMQAL 213
N ILF++NL ++ T L LF +Y +++R+ + G AFV F+D + + A+ L
Sbjct: 15 NRILFVKNLNYQITGEDLYDLFGRYGSIRQIRIGNEQKTKGTAFVVFDDVMDAKNALDHL 74
Query: 214 QGFKI 218
GF +
Sbjct: 75 NGFHL 79
>gi|226492197|ref|NP_001148276.1| LOC100281884 [Zea mays]
gi|195617106|gb|ACG30383.1| nucleic acid binding protein [Zea mays]
Length = 297
Score = 58.2 bits (139), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/87 (34%), Positives = 49/87 (56%), Gaps = 12/87 (13%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG--------IAFVEFEDDVQSS 207
+NILF+ LP + T + LF+ +PGFK++R++ +P + FVEFE+ +
Sbjct: 192 SNILFVDCLPTDCTRREVAHLFRCFPGFKDIRVVHKEPRRSGDKAYVLCFVEFENAKFAR 251
Query: 208 MAMQALQGFKITPQNP----MAITFAK 230
MQALQG++ + P + I FA+
Sbjct: 252 TPMQALQGYRFDDRKPDDRCLEIHFAR 278
>gi|336373742|gb|EGO02080.1| hypothetical protein SERLA73DRAFT_177811 [Serpula lacrymans var.
lacrymans S7.3]
gi|336386560|gb|EGO27706.1| hypothetical protein SERLADRAFT_461603 [Serpula lacrymans var.
lacrymans S7.9]
Length = 122
Score = 57.8 bits (138), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 35/119 (29%), Positives = 63/119 (52%), Gaps = 11/119 (9%)
Query: 3 TGDIPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
T +PP N+ +++KNLN +I E+L Y LF +YG I + K +G A++VF
Sbjct: 7 TAKLPPGANRILFVKNLNYQITGEDL----YDLFGRYGSIRQIRIGNEQKTKGTAFIVFD 62
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRR 119
+V A NA+ + F ++ + + Y AK+D + + +++EE A+ K++
Sbjct: 63 DVMDAKNALDHLNGFHLQERYIVVLYHMP-----AKQDAATAKADLARREEELAQLKKK 116
Score = 43.1 bits (100), Expect = 0.088, Method: Compositional matrix adjust.
Identities = 21/65 (32%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI--EAKPGIAFVEFEDDVQSSMAMQAL 213
N ILF++NL ++ T L LF +Y +++R+ + G AF+ F+D + + A+ L
Sbjct: 15 NRILFVKNLNYQITGEDLYDLFGRYGSIRQIRIGNEQKTKGTAFIVFDDVMDAKNALDHL 74
Query: 214 QGFKI 218
GF +
Sbjct: 75 NGFHL 79
>gi|328875060|gb|EGG23425.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 302
Score = 57.8 bits (138), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 47/79 (59%), Gaps = 4/79 (5%)
Query: 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQA 212
A P+ +LFI+++P T+ ++LF PGF +R KP AFVEF+D ++ AM+
Sbjct: 5 APPSKVLFIRDIPAGMTNDEFDLLFSNLPGFVSIR---RKPNFAFVEFKDRGFATSAMRR 61
Query: 213 LQGFKITPQN-PMAITFAK 230
G++ P + P++I F +
Sbjct: 62 YSGYRHHPTDRPLSIDFDR 80
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI--EAKPGIAFVEFEDDVQSSMAMQA 212
P + LF+ NLP + T L +LF+ GF R++ E K I F +F D + MAM+
Sbjct: 213 PQSTLFVSNLPKDVTERELSILFRFMRGFISCRLVIREGKYPICFCDFRDIPSAIMAMEI 272
Query: 213 LQGFKITPQN 222
LQG+++ P +
Sbjct: 273 LQGYRMDPND 282
>gi|331212215|ref|XP_003307377.1| hypothetical protein PGTG_00327 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|309297780|gb|EFP74371.1| hypothetical protein PGTG_00327 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 122
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/101 (31%), Positives = 55/101 (54%), Gaps = 11/101 (10%)
Query: 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61
++GD+ N+ +++KNLN K K E+L Y LF +YG I + PK RG A+VV+ +
Sbjct: 11 LSGDV--NRILFVKNLNYKTKGEDL----YDLFGKYGAIRQIRIGTDPKTRGTAFVVYED 64
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAK-----SKSDCVAKE 97
+ A NA + F ++ + + Y + +K+D +E
Sbjct: 65 ILDAKNAFDHLNGFHLQERYLVVLYHQFQRQAAKADLAKRE 105
Score = 43.1 bits (100), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 24/66 (36%), Positives = 36/66 (54%), Gaps = 4/66 (6%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP---GIAFVEFEDDVQSSMAMQA 212
N ILF++NL ++T L LF +Y +++R I P G AFV +ED + + A
Sbjct: 16 NRILFVKNLNYKTKGEDLYDLFGKYGAIRQIR-IGTDPKTRGTAFVVYEDILDAKNAFDH 74
Query: 213 LQGFKI 218
L GF +
Sbjct: 75 LNGFHL 80
>gi|432117206|gb|ELK37642.1| U1 small nuclear ribonucleoprotein A [Myotis davidii]
Length = 90
Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 47/76 (61%), Gaps = 2/76 (2%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG 215
N++LF+ NLP ET ML M F Q+ FK V ++ + +AFVE ++ VQ+ +L+G
Sbjct: 17 NHLLFLSNLP-ETNKFMLSMCFNQFSVFK-VWLVLGQHDMAFVESDNRVQAGALGDSLEG 74
Query: 216 FKITPQNPMAITFAKK 231
FKIT P I+F KK
Sbjct: 75 FKITQNYPTKISFVKK 90
>gi|356514689|ref|XP_003526036.1| PREDICTED: uncharacterized protein LOC100809186 [Glycine max]
Length = 228
Score = 57.4 bits (137), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/85 (34%), Positives = 49/85 (57%), Gaps = 8/85 (9%)
Query: 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--------GIAFVEFEDD 203
+AA +NILF+ LP++ T + LF+ + G+K++R++ +P + FVEF D
Sbjct: 116 SAADSNILFVGGLPNDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVDS 175
Query: 204 VQSSMAMQALQGFKITPQNPMAITF 228
+ AM+ALQG+K + P + T
Sbjct: 176 KCALTAMEALQGYKFDDKKPDSPTL 200
>gi|259147268|emb|CAY80521.1| Msl1p [Saccharomyces cerevisiae EC1118]
Length = 111
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+Y+ LNEKI + L+ +L+ LF+ +G + V++ K RGQA++ + AS A
Sbjct: 29 TLYVSQLNEKINMQRLRVNLFLLFATFGEVLK-VSMNFKKQRGQAFITMRTIDQASLAQI 87
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCV 94
+ F+ KP++++++KS++ +
Sbjct: 88 SLNGERFFGKPLKVEFSKSETKTL 111
>gi|323348091|gb|EGA82346.1| Msl1p [Saccharomyces cerevisiae Lalvin QA23]
Length = 111
Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+Y+ LNEKI + L+ +L+ LF+ +G + V++ K RGQA++ + AS A
Sbjct: 29 TLYVSQLNEKINMQRLRVNLFLLFATFGEVLK-VSMNFKKQRGQAFITMRTIDQASLAQI 87
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCV 94
+ F+ KP++++++KS++ +
Sbjct: 88 SLNGERFFGKPLKVEFSKSETKTL 111
>gi|6322199|ref|NP_012274.1| Msl1p [Saccharomyces cerevisiae S288c]
gi|731910|sp|P40567.1|MSL1_YEAST RecName: Full=U2 small nuclear ribonucleoprotein B''; Short=U2
snRNP B''
gi|556855|emb|CAA86079.1| unnamed protein product [Saccharomyces cerevisiae]
gi|1839518|gb|AAB47134.1| YU2B"=12.8kda hypothetical YIB9w gene product [Saccharomyces
cerevisiae=yeast, MGD 353-13D, Peptide, 111 aa]
gi|45270364|gb|AAS56563.1| YIR009W [Saccharomyces cerevisiae]
gi|151943168|gb|EDN61503.1| U2 snRNP component [Saccharomyces cerevisiae YJM789]
gi|190406214|gb|EDV09481.1| U2 snRNP component [Saccharomyces cerevisiae RM11-1a]
gi|256274156|gb|EEU09066.1| Msl1p [Saccharomyces cerevisiae JAY291]
gi|285812656|tpg|DAA08555.1| TPA: Msl1p [Saccharomyces cerevisiae S288c]
gi|323333075|gb|EGA74476.1| Msl1p [Saccharomyces cerevisiae AWRI796]
gi|323337230|gb|EGA78484.1| Msl1p [Saccharomyces cerevisiae Vin13]
gi|346228220|gb|AEO21097.1| MSL1 [synthetic construct]
gi|349578960|dbj|GAA24124.1| K7_Msl1p [Saccharomyces cerevisiae Kyokai no. 7]
gi|365765032|gb|EHN06547.1| Msl1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392298732|gb|EIW09828.1| Msl1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 111
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+Y+ LNEKI + L+ +L+ LF+ +G + V++ K RGQA++ + AS A
Sbjct: 29 TLYVSQLNEKINMQRLRVNLFLLFATFGEVLK-VSMNFKKQRGQAFITMRTIDQASLAQI 87
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCV 94
+ F+ KP++++++KS++ +
Sbjct: 88 SLNGERFFGKPLKVEFSKSETKTL 111
>gi|390337101|ref|XP_800412.2| PREDICTED: serine/arginine-rich splicing factor 12-like
[Strongylocentrotus purpuratus]
Length = 205
Score = 57.0 bits (136), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/105 (31%), Positives = 57/105 (54%), Gaps = 10/105 (9%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV---VALKTPKLRGQAWVVFS 60
G PPN ++Y++NL + + + E R+ LF +YG I D+ + T + RG A+V F
Sbjct: 6 GSRPPNTSLYVRNLPDDVSRAEDMRN---LFGKYGPISDIYIPLDYYTREPRGFAYVQFD 62
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYA----KSKSDCVAKEDGSF 101
++ A +A+ + + FY + + IQYA K+ + KE G +
Sbjct: 63 DIRDAEDAMYALDRYRFYGRELEIQYAEGDRKTPTQMRGKERGGY 107
>gi|71026823|ref|XP_763055.1| hypothetical protein [Theileria parva strain Muguga]
gi|68350008|gb|EAN30772.1| hypothetical protein TP03_0036 [Theileria parva]
Length = 288
Score = 56.6 bits (135), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 40/74 (54%), Gaps = 15/74 (20%)
Query: 52 RGQAWVVFSEVTAASNAVRQMQN---------------FPFYDKPMRIQYAKSKSDCVAK 96
RGQAWV++ + +A+ A++++Q + MRI YA KSD V+K
Sbjct: 7 RGQAWVIYDNINSATEALKELQGTLHTISTLFLHLFYRHKLFGHVMRINYALEKSDVVSK 66
Query: 97 EDGSFVPREKKKKQ 110
DG+FVPR K K+
Sbjct: 67 ADGTFVPRPKGPKK 80
Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 33/113 (29%), Positives = 54/113 (47%), Gaps = 16/113 (14%)
Query: 132 TGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA 191
TG S T S ++ N +LF+++LP + LF PGF E ++I +
Sbjct: 178 TGFSSGYSTGFSGGFSDDPSITRRNRVLFVEDLPDGIAHEDVNNLFHHMPGFVETKLINS 237
Query: 192 KPGIAFVEFEDDVQSSMAMQ--------------ALQGFKITPQNPMAITFAK 230
K +AF++F+++ S+ A+Q LQG K+ P+ I+FAK
Sbjct: 238 KH-VAFIDFDNEFNSNYALQRILPISYTFLHIFYILQG-KLLNGQPIKISFAK 288
>gi|344230443|gb|EGV62328.1| hypothetical protein CANTEDRAFT_115788 [Candida tenuis ATCC 10573]
Length = 180
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 51/193 (26%), Positives = 85/193 (44%), Gaps = 46/193 (23%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
TIYI NLNEK+ LKR L L Y + D+ KT + +GQA+V F N +R
Sbjct: 3 TIYINNLNEKVSANTLKRELQHLLKPYN-VIDIHVKKTLRKKGQAFVSFKN-ENIDNIIR 60
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMAN 130
++ N +K +R+ +AK S E Q ++ +
Sbjct: 61 KLNNHVLLNKSIRVTHAKQNS----------------------------YELLDQITIDS 92
Query: 131 GTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSS--MLEMLFQQYPGFKEVRM 188
+ + F N P+++L + + +T S +LE+ F ++ G+ E+R+
Sbjct: 93 RIQVKKH-----KFFN-------TPSSMLILNDYNEDTISKDQILEV-FDRFEGYLELRV 139
Query: 189 IEAKPGIAFVEFE 201
I+ K I F++FE
Sbjct: 140 IKNKK-IVFIDFE 151
>gi|388521817|gb|AFK48970.1| unknown [Lotus japonicus]
Length = 229
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 49/87 (56%), Gaps = 8/87 (9%)
Query: 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG--------IAFVEFE 201
+E A +N+LF+ LP + T + LF+ + G+K++R++ +P + FVEF+
Sbjct: 123 REGLADSNVLFVDVLPRDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMVLCFVEFD 182
Query: 202 DDVQSSMAMQALQGFKITPQNPMAITF 228
D + AM+ALQG+K + P + T
Sbjct: 183 DSKCALTAMEALQGYKFDDKKPDSRTL 209
>gi|348538447|ref|XP_003456702.1| PREDICTED: RNA-binding protein 40-like [Oreochromis niloticus]
Length = 508
Score = 56.2 bits (134), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/86 (30%), Positives = 53/86 (61%), Gaps = 4/86 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELK----RSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
P +Y+KN+ ++++++ELK R + + +FD+V +K +++GQA+V V
Sbjct: 406 PTCRLYVKNIAKQVEEKELKYIYGRYINLSSEEERNMFDIVLMKEGRMKGQAFVGLPSVQ 465
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
+A A+++ + YDKP+ +Q+A+S
Sbjct: 466 SAEKALQETNGYVLYDKPLVVQFARS 491
>gi|126649301|ref|XP_001388322.1| U1 snrnp [Cryptosporidium parvum Iowa II]
gi|32398796|emb|CAD98506.1| U1 snrnp, possible [Cryptosporidium parvum]
gi|126117416|gb|EAZ51516.1| U1 snrnp, putative [Cryptosporidium parvum Iowa II]
Length = 267
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/89 (33%), Positives = 48/89 (53%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
D N+TIYI NLN+ I + K SL +F++YG+I + + +GQAW+ FS
Sbjct: 20 SDDDENKTIYINNLNDSISIPKQKLSLEEIFAKYGKIESIKMFNSYFRKGQAWITFSNAV 79
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSD 92
+A NAV + K + + +A +S+
Sbjct: 80 SAVNAVNNEIGTQIFGKHVNVSFAAKESE 108
>gi|365760107|gb|EHN01850.1| Msl1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|401837850|gb|EJT41708.1| MSL1-like protein [Saccharomyces kudriavzevii IFO 1802]
Length = 111
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 52/89 (58%), Gaps = 1/89 (1%)
Query: 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
+ T+Y+ LNEKI + L+ +L+ LF+ +G + V++ K RGQA+V + A
Sbjct: 24 VEAKNTLYVSQLNEKINVQRLRVNLFLLFATFGEVLK-VSMNFKKQRGQAFVTMRTIDQA 82
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDCV 94
S A + F+DK ++++++K+++ +
Sbjct: 83 SLAQISLNGELFFDKTLKVEFSKNETKTL 111
>gi|294463261|gb|ADE77166.1| unknown [Picea sitchensis]
Length = 376
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/79 (35%), Positives = 45/79 (56%), Gaps = 8/79 (10%)
Query: 158 ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIE---AKPG-----IAFVEFEDDVQSSMA 209
+LFI LP + T +F+ + GFKEVR++ +PG + FVEF D +++A
Sbjct: 268 VLFIDGLPLDCTVREAAHIFRPFIGFKEVRVVHKEPKRPGGEKSVLCFVEFTDLRHAAIA 327
Query: 210 MQALQGFKITPQNPMAITF 228
+ALQG+K+ +P + T
Sbjct: 328 REALQGYKVDEHDPNSGTL 346
>gi|195390987|ref|XP_002054147.1| GJ22950 [Drosophila virilis]
gi|194152233|gb|EDW67667.1| GJ22950 [Drosophila virilis]
Length = 789
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 103/244 (42%), Gaps = 37/244 (15%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI K+ + L LF G I+D+ + P RG A+V F+ AA NAVRQ+ N
Sbjct: 173 KIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQLDNHE 232
Query: 77 FY-DKPMRIQYA------------KSKS-DCVAKEDGSFV-----------PREKKKKQE 111
K ++I + KSK D + +E G P +KKK +
Sbjct: 233 IKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIYSSPDDKKKNRG 292
Query: 112 EKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQE-----TAAPNNILFIQNLPH 166
+ A + GTG G A+ QE T + +L+++NL
Sbjct: 293 FCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQ 352
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226
+ T L+ F+QY + V+ I+ AF+ FED + AM+ L G ++ N + +
Sbjct: 353 DVTEDKLKEQFEQYGKVERVKKIKD---YAFIHFEDRDSAVEAMRGLNGKEVGASN-IEV 408
Query: 227 TFAK 230
+ AK
Sbjct: 409 SLAK 412
>gi|225429574|ref|XP_002280068.1| PREDICTED: uncharacterized protein LOC100257637 isoform 1 [Vitis
vinifera]
gi|296081671|emb|CBI20676.3| unnamed protein product [Vitis vinifera]
Length = 239
Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG--------IAFVEFEDDVQSS 207
+NILF+ LP + T + LF+ + GFKE+R++ +P + FVEF D S
Sbjct: 138 SNILFVDGLPKDCTRREVGHLFRPFIGFKEIRVVHKEPRHSGDKAMVLCFVEFNDASCSR 197
Query: 208 MAMQALQGFKITPQNPMAITF 228
A++ALQG+K + P + T
Sbjct: 198 TALEALQGYKFDDKKPDSPTL 218
>gi|296085076|emb|CBI28491.3| unnamed protein product [Vitis vinifera]
Length = 1054
Score = 55.5 bits (132), Expect = 2e-05, Method: Composition-based stats.
Identities = 58/233 (24%), Positives = 110/233 (47%), Gaps = 35/233 (15%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PP++ +++ NL+ I + L F Q+G + D VA + R A++ F + A
Sbjct: 422 PPSRHLWVGNLSHSISENTLTDP----FLQFGEL-DTVAFQPG--RSYAFINFKQEEDAI 474
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS 126
+A+R +Q F P++I++AK++ A D ++ R ++E+ R + +Q+
Sbjct: 475 HAMRSLQGFSVAGMPLKIEFAKAEKSSTASRDEDYLQR-----RDEQRSTIRGSPFSQRD 529
Query: 127 SMANGTGAQSNGGTAASF---RNANTQETAAPNNILFIQNLPHETTSSMLE----MLFQQ 179
S ++ G+ +F +++ + P +L+I P S+L+ +L +
Sbjct: 530 S-------RTRHGSPDTFYPDKSSISDRKGEPCEVLWI-GFP-----SLLKVDETILRKA 576
Query: 180 YPGFKEVRMIEAKPG--IAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
+ F E+ I + PG AFV+F + A + LQG K+ + I FAK
Sbjct: 577 FSPFGEIEKITSFPGRSYAFVQFRSVTAACRAKETLQG-KLFGNPRVHICFAK 628
>gi|195113079|ref|XP_002001097.1| GI10594 [Drosophila mojavensis]
gi|193917691|gb|EDW16558.1| GI10594 [Drosophila mojavensis]
Length = 721
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 103/244 (42%), Gaps = 37/244 (15%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI K+ + L LF G I+D+ + P RG A+V F+ AA NAVRQ+ N
Sbjct: 229 KIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQLDNHE 288
Query: 77 FY-DKPMRIQYA------------KSKS-DCVAKEDGSFV-----------PREKKKKQE 111
K ++I + KSK D + +E G P +KKK +
Sbjct: 289 IKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIYSSPDDKKKNRG 348
Query: 112 EKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQE-----TAAPNNILFIQNLPH 166
+ A + GTG G A+ QE T + +L+++NL
Sbjct: 349 FCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQ 408
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226
+ T L+ F+QY + V+ I+ AF+ FED + AM+ L G ++ N + +
Sbjct: 409 DVTEDKLKEQFEQYGKVERVKKIKD---YAFIHFEDRDSAVEAMRGLNGKEVGASN-IEV 464
Query: 227 TFAK 230
+ AK
Sbjct: 465 SLAK 468
>gi|357628249|gb|EHJ77639.1| 14 kDa subunit splicing factor 3b [Danaus plexippus]
Length = 126
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 58/109 (53%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIRNLPYKISAEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y +S + +F + +KKQEE
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYRS--------NKAFKGMDIEKKQEE 109
Score = 45.1 bits (105), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--KPGIAFVEFED 202
R AN + N IL+I+NLP++ ++ + +F +Y +++R+ G AFV +ED
Sbjct: 7 RRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYED 66
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 67 IFDAKNACDHLSGFNVCNRYLVVLYY 92
>gi|410915937|ref|XP_003971443.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Takifugu rubripes]
Length = 598
Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 59/238 (24%), Positives = 102/238 (42%), Gaps = 25/238 (10%)
Query: 1 MITGDIPPNQT-IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAW 56
+ TG PP T I++ KI ++ + L LF + G I+D+ + P RG A+
Sbjct: 152 VYTGSQPPVGTEIFVG----KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLSGLNRGYAF 207
Query: 57 VVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEE 112
V F AA AV+ N I+ K C++ + +P+ K K E+
Sbjct: 208 VTFCSKEAAQEAVKLCNNH-------EIRPGKQIGVCISVANNRLFVGSIPKSKTK--EQ 258
Query: 113 KAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSM 172
E + E + + F +TAA +LF++NL + T +
Sbjct: 259 IVEEFSKVTEGLSDVILYLQPQDKSKNRGFCFLEYEDHKTAAQVKVLFVRNLANSVTEEI 318
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
LE F +Y + V+ ++ AF+ FE+ + A++ + G ++ + P+ I FAK
Sbjct: 319 LEKSFSEYGNLERVKKLK---DYAFIHFEERDGAVKALEEMNGKELEGE-PIEIVFAK 372
>gi|392592744|gb|EIW82070.1| pre-mRNA branch site protein p14 [Coniophora puteana RWD-64-598
SS2]
Length = 122
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 3 TGDIPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
T +PP N+ +++KNLN +I E+L Y LF +YG + + PK +G A+VVF
Sbjct: 7 TSKLPPGANRILFVKNLNYQITGEDL----YDLFGRYGTVRQIRIGNEPKTKGTAFVVFE 62
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQY 86
+V A NA+ + F ++ + + Y
Sbjct: 63 DVMDAKNALEHLNGFHLQERYIVVLY 88
Score = 43.9 bits (102), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 4/66 (6%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP---GIAFVEFEDDVQSSMAMQA 212
N ILF++NL ++ T L LF +Y +++R I +P G AFV FED + + A++
Sbjct: 15 NRILFVKNLNYQITGEDLYDLFGRYGTVRQIR-IGNEPKTKGTAFVVFEDVMDAKNALEH 73
Query: 213 LQGFKI 218
L GF +
Sbjct: 74 LNGFHL 79
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 53/226 (23%), Positives = 97/226 (42%), Gaps = 52/226 (23%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP--KLRGQAWVVFSEVTAASNAV 69
+Y+KNL+E + +E+L+ +F ++G + VV +K K +G +V + + AA +V
Sbjct: 211 VYVKNLHESVTEEKLRE----VFEKFGALTSVVVMKDAEGKSKGFGFVCYEDAEAAGKSV 266
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMA 129
++ YDK ED ++V +KK E +AE K + + ++ M
Sbjct: 267 EELDG---YDK---------------IEDKAWVVCRAQKKSEREAELKAKFDAERRERME 308
Query: 130 NGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI 189
GA L+I+NL + L LF ++ R++
Sbjct: 309 KMAGAN-----------------------LYIKNLEDTVDDAKLRELFAEFGTITSCRVM 345
Query: 190 E----AKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
A G AFV F +++ A+ + G K+ Q P+ + A++
Sbjct: 346 RDTAGASRGSAFVAFSSADEATRAVTEMNG-KMAGQKPLYVALAQR 390
Score = 40.4 bits (93), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 6/83 (7%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAV 69
+YIKNL + + +L+ LF+++G I ++ RG A+V FS A+ AV
Sbjct: 315 LYIKNLEDTVDDAKLRE----LFAEFGTITSCRVMRDTAGASRGSAFVAFSSADEATRAV 370
Query: 70 RQMQNFPFYDKPMRIQYAKSKSD 92
+M KP+ + A+ K D
Sbjct: 371 TEMNGKMAGQKPLYVALAQRKED 393
>gi|324509930|gb|ADY44158.1| Splicing factor, arginine/serine-rich 6 [Ascaris suum]
Length = 136
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 159 LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
+F+ LPH+ T+ LE F +Y ++V M PG AF+EFED + A++AL G +I
Sbjct: 17 VFVGGLPHDATTQELEEAFGRYGPIRKVWMARRPPGFAFIEFEDSRDADDAVKALNGARI 76
Query: 219 TPQNP 223
P
Sbjct: 77 CGVRP 81
>gi|344275550|ref|XP_003409575.1| PREDICTED: RNA-binding protein 40 [Loxodonta africana]
Length = 517
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 31/86 (36%), Positives = 54/86 (62%), Gaps = 4/86 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSL--YCLFS-QYGRI-FDVVALKTPKLRGQAWVVFSEVT 63
PN IY+KNL + +++++LK Y FS + RI FD+ +K +++GQA++ T
Sbjct: 418 PNCRIYVKNLAKHVQEKDLKFIFGRYVNFSSETERIMFDIRLMKEGRMKGQAFIGLPNET 477
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
AA+ A+R+ + + KPM +Q+A+S
Sbjct: 478 AAAKALREANGYVLFGKPMVVQFARS 503
>gi|148909819|gb|ABR17996.1| unknown [Picea sitchensis]
Length = 490
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 52/220 (23%), Positives = 85/220 (38%), Gaps = 14/220 (6%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVAL---KTPKLRGQAWVVFSE 61
D + +I++ +L+ ++ +L+ FS Y D + K+ + RG +V F
Sbjct: 159 DTTGHYSIFVGDLSPEVTDA----ALFACFSIYPSCSDARVMWDQKSGRSRGFGFVSFRN 214
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAE 121
A NA+ QM +P+R +A S +D + A+
Sbjct: 215 QQDADNAINQMTGKTLGSRPIRCNWATKSSSGNQSDDKQTSEMQFASNASNNTSANGSAD 274
Query: 122 E-AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
+ A GTG Q GG S N T ++I NLPHE T + L F
Sbjct: 275 HNISAGTTAVGTGGQQKGGAQTSGPENNPSYTT-----VYIGNLPHEVTQTELHRQFLAL 329
Query: 181 P-GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIT 219
G E ++ G FV + ++++A+Q G I
Sbjct: 330 GVGVIEDVRVQRDKGFGFVRYRSHEEAALAIQLANGRVIC 369
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 55/226 (24%), Positives = 96/226 (42%), Gaps = 52/226 (23%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT--PKLRGQAWVVFSEVTAASNAV 69
+Y+KNL+E + +++LK +F G++ VV +K K +G +V F E AAS AV
Sbjct: 199 VYVKNLHESVDEDKLKE----VFGAVGKLTSVVIMKDGEGKSKGFGFVCFEESEAASEAV 254
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMA 129
++ YDK ED ++V +KK E +AE K + + ++ +
Sbjct: 255 EKLDG---YDKI---------------EDKAWVVCRAQKKAEREAELKAKFDAERRERLE 296
Query: 130 NGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI 189
GA L+I+NL + L LF ++ R++
Sbjct: 297 KMAGAN-----------------------LYIKNLEDTVDDAKLRELFAEFGTITSCRVM 333
Query: 190 E----AKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
A G AFV F +++ A+ + G K+ P+ + A++
Sbjct: 334 RDASGASRGSAFVAFSSADEATRAVTEMNG-KMAGTKPLYVALAQR 378
Score = 40.8 bits (94), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 6/83 (7%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAV 69
+YIKNL + + +L+ LF+++G I ++ + RG A+V FS A+ AV
Sbjct: 303 LYIKNLEDTVDDAKLRE----LFAEFGTITSCRVMRDASGASRGSAFVAFSSADEATRAV 358
Query: 70 RQMQNFPFYDKPMRIQYAKSKSD 92
+M KP+ + A+ K D
Sbjct: 359 TEMNGKMAGTKPLYVALAQRKED 381
>gi|409049784|gb|EKM59261.1| hypothetical protein PHACADRAFT_205445 [Phanerochaete carnosa
HHB-10118-sp]
Length = 123
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 3 TGDIPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
T +PP N+ +++KNLN +I E+L Y LF +YG I + K RG A+VVF
Sbjct: 7 TAKLPPGANRILFVKNLNYQITGEDL----YDLFGRYGSIRQIRVGSEQKTRGTAFVVFD 62
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQY 86
+V A NA+ + F ++ + + Y
Sbjct: 63 DVMDAKNALDHLNGFHLQERYIVVLY 88
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQSSMAMQAL 213
N ILF++NL ++ T L LF +Y +++R+ + G AFV F+D + + A+ L
Sbjct: 15 NRILFVKNLNYQITGEDLYDLFGRYGSIRQIRVGSEQKTRGTAFVVFDDVMDAKNALDHL 74
Query: 214 QGFKI 218
GF +
Sbjct: 75 NGFHL 79
>gi|324513594|gb|ADY45580.1| Splicing factor, arginine/serine-rich 6 [Ascaris suum]
Length = 144
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/65 (38%), Positives = 37/65 (56%)
Query: 159 LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
+F+ LPH+ T+ LE F +Y ++V M PG AF+EFED + A++AL G +I
Sbjct: 12 VFVGGLPHDATTQELEEAFGRYGPIRKVWMARRPPGFAFIEFEDSRDADDAVKALNGARI 71
Query: 219 TPQNP 223
P
Sbjct: 72 CGVRP 76
>gi|50546775|ref|XP_500857.1| YALI0B13860p [Yarrowia lipolytica]
gi|49646723|emb|CAG83108.1| YALI0B13860p [Yarrowia lipolytica CLIB122]
Length = 113
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 45/74 (60%), Gaps = 2/74 (2%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQSSMAMQA 212
PNNILF++NLP+E+TS L LF ++ +++R K G AFV +ED ++ A++
Sbjct: 9 PNNILFVKNLPYESTSDELYELFGRFGAVRQIRAGSEKDTRGTAFVVYEDIDDATEAVKT 68
Query: 213 LQGFKITPQNPMAI 226
L GF + +A+
Sbjct: 69 LSGFNYKNRYLVAL 82
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 41/75 (54%), Gaps = 4/75 (5%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN +++KNL + +EL Y LF ++G + + A RG A+VV+ ++ A+
Sbjct: 9 PNNILFVKNLPYESTSDEL----YELFGRFGAVRQIRAGSEKDTRGTAFVVYEDIDDATE 64
Query: 68 AVRQMQNFPFYDKPM 82
AV+ + F + ++ +
Sbjct: 65 AVKTLSGFNYKNRYL 79
>gi|328860615|gb|EGG09720.1| hypothetical protein MELLADRAFT_95176 [Melampsora larici-populina
98AG31]
Length = 122
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 54/101 (53%), Gaps = 11/101 (10%)
Query: 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61
++GD+ N+ +++KNLN K K E+L Y LF +YG I + K RG A+VV+ +
Sbjct: 11 LSGDV--NRILFVKNLNYKTKGEDL----YDLFGKYGAIRQIRIGNDAKTRGTAFVVYED 64
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAK-----SKSDCVAKE 97
+ A NA + F ++ + + Y + +K+D +E
Sbjct: 65 ILDAKNAFDHLNGFHLQERYLVVLYHQFQRQAAKADLAKRE 105
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM-IEAKP-GIAFVEFEDDVQSSMAMQAL 213
N ILF++NL ++T L LF +Y +++R+ +AK G AFV +ED + + A L
Sbjct: 16 NRILFVKNLNYKTKGEDLYDLFGKYGAIRQIRIGNDAKTRGTAFVVYEDILDAKNAFDHL 75
Query: 214 QGFKI 218
GF +
Sbjct: 76 NGFHL 80
>gi|393246058|gb|EJD53567.1| RNA-binding domain-containing protein [Auricularia delicata
TFB-10046 SS5]
Length = 139
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 37/118 (31%), Positives = 61/118 (51%), Gaps = 13/118 (11%)
Query: 2 ITGDIPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVF 59
I +PP N+ +++KNLN I E+L Y LF +YG I V K RG A+VV+
Sbjct: 24 IQSKLPPGANRILFVKNLNYTITGEDL----YDLFGRYGSIRQVRIGNDAKTRGTAFVVY 79
Query: 60 SEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
+V A NA+ + F ++ + + Y A++DG + E +++E+ A+ K
Sbjct: 80 EDVMDAKNALDHLNGFHLQERYIVVLYHMP-----ARQDG--LKSEIARREEDLAKAK 130
Score = 44.3 bits (103), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 38/67 (56%), Gaps = 2/67 (2%)
Query: 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI-EAKP-GIAFVEFEDDVQSSMAMQ 211
N ILF++NL + T L LF +Y ++VR+ +AK G AFV +ED + + A+
Sbjct: 31 GANRILFVKNLNYTITGEDLYDLFGRYGSIRQVRIGNDAKTRGTAFVVYEDVMDAKNALD 90
Query: 212 ALQGFKI 218
L GF +
Sbjct: 91 HLNGFHL 97
>gi|452825214|gb|EME32212.1| RNA-binding protein, putative [Galdieria sulphuraria]
Length = 333
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 60/240 (25%), Positives = 102/240 (42%), Gaps = 39/240 (16%)
Query: 26 LKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNF------PFYD 79
L+R ++ LF ++D +K R + VVF+ A M++F P
Sbjct: 39 LEREVHNLFRFRYPLYDGCIIKNSSRRKEP-VVFAVFRTREEAEEAMKDFDGIVFDPALG 97
Query: 80 KPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGA----- 134
++I++AKS + S + ++ + + E++ R + S+ GTG
Sbjct: 98 SKLKIEFAKSNTRVKRDWAHSSSFEDNRRNEGRRVEKRYRGSDY---SLGTGTGGVVAQL 154
Query: 135 ----QSNGGTAAS----------FRNANTQETAAPN------NILFIQNLPHETTSSMLE 174
Q AS F N + T+ P+ + LF+ NL T + LE
Sbjct: 155 PLFTQPGSWNLASNNTPGLQYPMFSNVSLPLTSNPSFNQNACSTLFVGNLSPSVTQAELE 214
Query: 175 MLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQALQGFKI--TPQNPMAITFAK 230
LF + GF+ VR+ + + +AFVEF D V S+ AMQ Q + + + + I FA+
Sbjct: 215 NLFSRCTGFRRVRLNIKDERAPVAFVEFTDSVYSTQAMQQCQNVPLPSSEKGGIRIEFAR 274
>gi|443689346|gb|ELT91761.1| hypothetical protein CAPTEDRAFT_191651 [Capitella teleta]
Length = 484
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 49/85 (57%), Gaps = 1/85 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P +T+++KNL+ + + EL S + F + G + L +++GQA+V F T+AS
Sbjct: 398 PTETLFVKNLHPSVDEAELS-SPFLSFQEEGEERIIFRLLCGRMKGQAFVRFPNTTSASA 456
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSD 92
A+ + F D+PM IQ+A++ D
Sbjct: 457 ALNAINGFRLKDRPMIIQFARTAGD 481
>gi|194744098|ref|XP_001954532.1| GF16693 [Drosophila ananassae]
gi|190627569|gb|EDV43093.1| GF16693 [Drosophila ananassae]
Length = 710
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 103/244 (42%), Gaps = 37/244 (15%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI K+ + L LF G I+D+ + P RG A+V F+ AA NAVRQ+ N
Sbjct: 173 KIPKDMYEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNREAAVNAVRQLDNHE 232
Query: 77 FY-DKPMRIQYA------------KSKS-DCVAKEDGSFV-----------PREKKKKQE 111
K ++I + KSK D + +E G P +KKK +
Sbjct: 233 IKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIYSSPDDKKKNRG 292
Query: 112 EKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQE-----TAAPNNILFIQNLPH 166
+ A + GTG G A+ QE T + +L+++NL
Sbjct: 293 FCFLEYESHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQ 352
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226
+ + L+ F+QY + V+ I+ AF+ FED + AM+ L G +I N + +
Sbjct: 353 DVSEDKLKEHFEQYGKVERVKKIKD---YAFIHFEDRDSAVEAMRGLNGKEIGASN-IEV 408
Query: 227 TFAK 230
+ AK
Sbjct: 409 SLAK 412
>gi|389610245|dbj|BAM18734.1| splicing factor SC35 [Papilio xuthus]
Length = 126
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 58/109 (53%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYVRNLPYKISAEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y +S + +F + +KKQEE
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYRS--------NKAFKGMDIEKKQEE 109
Score = 44.7 bits (104), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--KPGIAFVEFED 202
R AN + N IL+++NLP++ ++ + +F +Y +++R+ G AFV +ED
Sbjct: 7 RRANVRLPPEVNRILYVRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYED 66
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 67 IFDAKNACDHLSGFNVCNRYLVVLYY 92
>gi|67619324|ref|XP_667641.1| U1 snrnp [Cryptosporidium hominis TU502]
gi|54658786|gb|EAL37403.1| U1 snrnp [Cryptosporidium hominis]
Length = 267
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 48/89 (53%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
D N+TIY+ NLN+ I + K +L +F++YG+I + + +GQAW+ FS
Sbjct: 20 SDDDENKTIYVNNLNDSISIPKQKLALEEIFAKYGKIESIKMFNSYFRKGQAWITFSNAV 79
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSD 92
+A NAV + K + + +A +S+
Sbjct: 80 SAVNAVNNEIGTQIFGKHVNVSFAAEESE 108
>gi|367000019|ref|XP_003684745.1| hypothetical protein TPHA_0C01550 [Tetrapisispora phaffii CBS 4417]
gi|357523042|emb|CCE62311.1| hypothetical protein TPHA_0C01550 [Tetrapisispora phaffii CBS 4417]
Length = 116
Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 51/87 (58%), Gaps = 1/87 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P T+YI NL++ I + L+ +L+ LFS YG + +++ T + RGQA++ V A+
Sbjct: 31 PKSTLYINNLSDGIGSKNLRTNLFLLFSVYGEVIK-ISVNTKRQRGQAFIRMKNVDQANL 89
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCV 94
A + F+DK ++I+++ ++ V
Sbjct: 90 AKVSLNGEIFFDKQLQIEFSANEMKAV 116
>gi|112982994|ref|NP_001037588.1| 14 kDa subunit splicing factor 3b [Bombyx mori]
gi|95102910|gb|ABF51396.1| 14 kDa subunit splicing factor 3b [Bombyx mori]
gi|95115196|gb|ABF55964.1| CG13298-like protein [Bombyx mori]
Length = 126
Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 35/109 (32%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIRNLPYKISAEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y +S + +F + KKQEE
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYRS--------NKAFKGIDIDKKQEE 109
Score = 45.4 bits (106), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--KPGIAFVEFED 202
R AN + N IL+I+NLP++ ++ + +F +Y +++R+ G AFV +ED
Sbjct: 7 RRANVRLPPEVNRILYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYED 66
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 67 IFDAKNACDHLSGFNVCNRYLVVLYY 92
>gi|449525690|ref|XP_004169849.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like, partial
[Cucumis sativus]
Length = 306
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 60/235 (25%), Positives = 102/235 (43%), Gaps = 44/235 (18%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQ--AWVVFSEVTAASN 67
+T++I L E +K R +Y LF ++ ++ L+TP Q A+ VFS+ +A
Sbjct: 68 RTLFIAGLPEDVKP----REIYNLFREFPG-YESSHLRTPTQTTQPFAFAVFSDQQSAVG 122
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEK---AERKRRAEEAQ 124
A+ + F + + Y +AK + R K+ + EE+ +++K +
Sbjct: 123 AMHAVNGMVFDLEKQSVLYVD-----LAKSNS----RSKRTRTEEERYGSDKKAKVSIIP 173
Query: 125 QSSMANGTGAQSNGG---------------TAASFRNANTQETAA-------PNNILFIQ 162
+S+ G G+ G + SF N +T A P LF+
Sbjct: 174 RSTPDPGLGSTHMSGMGNSAYNTIGYPSAQSHGSFDNKTVNDTVAANIPQNPPCPTLFVA 233
Query: 163 NLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQALQG 215
NL T L +F + PGF +++M P +AFV+F+D S+ A+ LQG
Sbjct: 234 NLGPGCTEQELIQIFLRCPGFLKLKMQSTYGAP-VAFVDFQDTACSTGALNHLQG 287
>gi|405951102|gb|EKC19044.1| RNA-binding protein 40 [Crassostrea gigas]
Length = 488
Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 51/83 (61%), Gaps = 6/83 (7%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGR-----IFDVVALKTPKLRGQAWVVFSEVTAAS 66
+YIKNL ++ +++L ++Y F + + IFD+ +K +++GQA+V FS T+A
Sbjct: 394 LYIKNLAKQTTEQDL-VNIYGSFVNWDKELEKNIFDIRLMKEGRMKGQAFVTFSNETSAH 452
Query: 67 NAVRQMQNFPFYDKPMRIQYAKS 89
A+++ F KPM +Q+A+S
Sbjct: 453 KALKETNGFVLNSKPMAVQFARS 475
>gi|195449649|ref|XP_002072163.1| GK22469 [Drosophila willistoni]
gi|194168248|gb|EDW83149.1| GK22469 [Drosophila willistoni]
Length = 731
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 66/244 (27%), Positives = 103/244 (42%), Gaps = 37/244 (15%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI K+ + L LF G I+D+ + P RG A+V F+ AA NAVRQ+ N
Sbjct: 173 KIPKDMFEDELIPLFENCGTIWDLRLMMDPMTGTNRGYAFVTFTNRDAAINAVRQLDNHE 232
Query: 77 FY-DKPMRIQYA------------KSKS-DCVAKEDGSFV-----------PREKKKKQE 111
K ++I + KSK D + +E G P +KKK +
Sbjct: 233 IKPGKCLKINISVPNLRLFVGNIPKSKGKDEILEEFGKLTAGLYEVIIYSSPDDKKKNRG 292
Query: 112 EKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQE-----TAAPNNILFIQNLPH 166
+ A + GTG G A+ QE T + +L+++NL
Sbjct: 293 FCFLEYDSHKAASLAKRRLGTGRIKVWGCDIIVDWADPQEEPDEQTMSKVKVLYVRNLTQ 352
Query: 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226
+ + L+ F+QY + V+ I+ AF+ FED + AM+ L G +I N + +
Sbjct: 353 DVSEDKLKEQFEQYGKVERVKKIKD---YAFIHFEDRDSAVEAMRGLNGKEIGASN-IEV 408
Query: 227 TFAK 230
+ AK
Sbjct: 409 SLAK 412
>gi|312086378|ref|XP_003145052.1| hypothetical protein LOAG_09478 [Loa loa]
Length = 396
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 120 AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPN---NILFIQNLPHETTSSMLEML 176
A AQ ++ A A + NA T+ TAA + + LF+ NL T L+ +
Sbjct: 270 AAVAQLTAATQHVAAAQLNAVAVTSANAVTKATAAVSPACSTLFVANLGDGITEDELKAV 329
Query: 177 FQQYPGFKEVRM-IEAKPGIAFVEFEDDVQSSMAMQALQGFKIT 219
F YPGF +R+ +AFVEF D Q+++ M ALQG +I+
Sbjct: 330 FCAYPGFTRLRLHTRNDTTVAFVEFRDVRQATLVMNALQGCRIS 373
>gi|224129262|ref|XP_002320541.1| predicted protein [Populus trichocarpa]
gi|222861314|gb|EEE98856.1| predicted protein [Populus trichocarpa]
Length = 827
Score = 53.9 bits (128), Expect = 5e-05, Method: Composition-based stats.
Identities = 57/229 (24%), Positives = 105/229 (45%), Gaps = 21/229 (9%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
G+ PP++ +++ NL+ I++ +L F Q+G + D VA + R A+V F++
Sbjct: 2 GNNPPSRHLWVGNLSHSIEETDLTDE----FLQFGDL-DSVAFQPG--RSYAFVNFNKEE 54
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA 123
A A++ +Q +P P+RI++AK+ D ++ R ++E+ R +
Sbjct: 55 DAIAAIKSLQGYPLAGNPLRIEFAKADKSSTPSHDEDYLQR-----RDEQRLTLRGSPFL 109
Query: 124 QQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF 183
Q+ S + T ++ + +A P+ +L+I M+ L + + F
Sbjct: 110 QRDSRVRNASPE----TFYPDKSKMSDNSAEPSEVLWIGFPALLKVDEMI--LRKAFSPF 163
Query: 184 KEVRMIEAKPG--IAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
E+ I PG AFV F + + A + LQG K+ + I FAK
Sbjct: 164 GEIEKITVFPGRSYAFVRFTNLTSACRAKETLQG-KLFGNPRVHICFAK 211
>gi|363807398|ref|NP_001242381.1| uncharacterized protein LOC100816255 [Glycine max]
gi|255647054|gb|ACU23995.1| unknown [Glycine max]
Length = 220
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--------GIAFVEFEDD 203
+AA +NILF+ LP + T + LF+ + G+K++R++ +P + FVEF D
Sbjct: 115 SAADSNILFVGGLPKDCTRREVGHLFRPFIGYKDIRVVHKEPRRSGDKAMTLCFVEFVDS 174
Query: 204 VQSSMAMQALQGFKITPQNPMAITF 228
+ A++ LQG+K + P + T
Sbjct: 175 NCALTALETLQGYKFDDKKPDSPTL 199
>gi|321448102|gb|EFX61317.1| hypothetical protein DAPPUDRAFT_69919 [Daphnia pulex]
Length = 77
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/78 (34%), Positives = 48/78 (61%), Gaps = 3/78 (3%)
Query: 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQAL 213
APN+ILF Q L T+ +L +F ++PG ++VR+ A AF+E+ED+ ++ A+ AL
Sbjct: 3 APNHILFCQGLDQTITAEILTEVFMRFPGLRDVRL--APKNFAFIEYEDEFKAGNALSAL 60
Query: 214 QGFKITPQNPMAITFAKK 231
++ + +++AKK
Sbjct: 61 HDTQVG-NITLKLSYAKK 77
>gi|393910177|gb|EFO19018.2| hypothetical protein LOAG_09478 [Loa loa]
Length = 395
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 36/104 (34%), Positives = 53/104 (50%), Gaps = 4/104 (3%)
Query: 120 AEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPN---NILFIQNLPHETTSSMLEML 176
A AQ ++ A A + NA T+ TAA + + LF+ NL T L+ +
Sbjct: 270 AAVAQLTAATQHVAAAQLNAVAVTSANAVTKATAAVSPACSTLFVANLGDGITEDELKAV 329
Query: 177 FQQYPGFKEVRM-IEAKPGIAFVEFEDDVQSSMAMQALQGFKIT 219
F YPGF +R+ +AFVEF D Q+++ M ALQG +I+
Sbjct: 330 FCAYPGFTRLRLHTRNDTTVAFVEFRDVRQATLVMNALQGCRIS 373
>gi|432927341|ref|XP_004080978.1| PREDICTED: RNA-binding protein 40-like [Oryzias latipes]
Length = 500
Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 31/101 (30%), Positives = 61/101 (60%), Gaps = 9/101 (8%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLF----SQYGR-IFDVVALKTPKLRGQAWVVFSEV 62
P +Y+KN+++++++++L R +Y + S+ R +FDVV +K +++GQA++
Sbjct: 398 PTCRLYVKNISKQVEEKDL-RYIYGRYIDPSSEEERNMFDVVLMKEGRMKGQAFIGLPNE 456
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKS---KSDCVAKEDGS 100
+A A+R+ F +DKP+ +Q+A+S K D + GS
Sbjct: 457 QSAEKALRETNGFVLHDKPLVVQFARSARPKQDNTDTKKGS 497
>gi|224088786|ref|XP_002308540.1| predicted protein [Populus trichocarpa]
gi|222854516|gb|EEE92063.1| predicted protein [Populus trichocarpa]
Length = 476
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 31/87 (35%), Positives = 49/87 (56%), Gaps = 12/87 (13%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA---KPG-----IAFVEFEDDVQSS 207
+NILF+ LP + T + LF+ + G+KE+R++ K G + FVEF D ++
Sbjct: 173 SNILFVDGLPTDCTRREVGHLFRPFIGYKEIRVVHKEARKSGDRATVLCFVEFTDANCAA 232
Query: 208 MAMQALQGFKITPQNP----MAITFAK 230
AM+ALQG+K + P + I FA+
Sbjct: 233 TAMEALQGYKFDDKKPDSPTLKIQFAR 259
>gi|443687814|gb|ELT90688.1| hypothetical protein CAPTEDRAFT_200790 [Capitella teleta]
Length = 440
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/87 (31%), Positives = 50/87 (57%), Gaps = 6/87 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGR-----IFDVVALKTPKLRGQAWVVFSEV 62
P +YIKNL++ + +++L +Y + + +FD+ +K +++GQA+V V
Sbjct: 344 PTTRLYIKNLSKAVTEKDL-HHIYGRYVNWENEQDRLMFDMRLMKEGRMKGQAFVTLPSV 402
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKS 89
+ A AVR+ F DKP+ +Q+A+S
Sbjct: 403 SQAEKAVRETHAFLLIDKPLVVQFARS 429
>gi|449549949|gb|EMD40914.1| hypothetical protein CERSUDRAFT_111500 [Ceriporiopsis
subvermispora B]
Length = 123
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 3 TGDIPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
T +PP N+ +++KNLN +I E+L Y LF +YG I + K RG A+VVF
Sbjct: 7 TNKLPPGANRILFVKNLNYQITGEDL----YDLFGRYGSIRQIRIGSEQKSRGTAFVVFD 62
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQY 86
+V A NA+ + F ++ + + Y
Sbjct: 63 DVMDAKNALDHLNGFHLQERYIVVLY 88
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQSSMAMQAL 213
N ILF++NL ++ T L LF +Y +++R+ + G AFV F+D + + A+ L
Sbjct: 15 NRILFVKNLNYQITGEDLYDLFGRYGSIRQIRIGSEQKSRGTAFVVFDDVMDAKNALDHL 74
Query: 214 QGFKI 218
GF +
Sbjct: 75 NGFHL 79
>gi|166796977|gb|AAI59025.1| rnpc3 protein [Xenopus (Silurana) tropicalis]
Length = 520
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYG-----RIFDVVALKTPKLRGQAWVVFSEV 62
PN +Y+KNL+++ ++++LK ++ F + +FD+ +K +++GQA++ F
Sbjct: 421 PNCRLYVKNLSKQAEEKDLK-FIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTE 479
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKS 89
A+ A++ + + +DKPM IQ+A+S
Sbjct: 480 DVAAQALKHVHGYVLHDKPMVIQFARS 506
>gi|62858877|ref|NP_001016017.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
gi|115530784|emb|CAL49356.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
Length = 527
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYG-----RIFDVVALKTPKLRGQAWVVFSEV 62
PN +Y+KNL+++ ++++LK ++ F + +FD+ +K +++GQA++ F
Sbjct: 428 PNCRLYVKNLSKQAEEKDLK-FIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTE 486
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKS 89
A+ A++ + + +DKPM IQ+A+S
Sbjct: 487 DVAAQALKHVHGYVLHDKPMVIQFARS 513
>gi|357618884|gb|EHJ71687.1| hypothetical protein KGM_12879 [Danaus plexippus]
Length = 728
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 59/230 (25%), Positives = 105/230 (45%), Gaps = 32/230 (13%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP--KLRGQAWVVFSEVTAAS 66
N + I+N++ K +E L+ F++YG + +V LK KL G A+V F+ V A+
Sbjct: 21 NARLIIRNISFKATEESLREH----FAKYGTVEEVKLLKKADGKLVGCAFVHFTHVPMAN 76
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS 126
A+ PF +P+ + +A K +++GS KK+Q + + E +
Sbjct: 77 KAIAATNKKPFLGRPIYVSWAVPKHQYNGEQNGSPT----KKRQTSGSSDDVKVEVKDED 132
Query: 127 SMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEV 186
+ N ++ + RNA L I+N+ + T L+ F+ Y EV
Sbjct: 133 TADNQKPSEDKNKMRVN-RNAR----------LIIRNVSFKATEESLKEHFEPYGNILEV 181
Query: 187 RMIEAKP-----GIAFVEFEDDVQSSMAMQALQGFKITP--QNPMAITFA 229
++++ KP G AFV F++ MA +AL + P P+++ +A
Sbjct: 182 KLLK-KPDGKLVGCAFVHFKN---VPMAKKALLNTNMKPFLGRPISVDWA 227
>gi|213624585|gb|AAI71301.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
gi|213627408|gb|AAI71275.1| RNA-binding region (RNP1, RRM) containing 3 [Xenopus (Silurana)
tropicalis]
Length = 527
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 54/87 (62%), Gaps = 6/87 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYG-----RIFDVVALKTPKLRGQAWVVFSEV 62
PN +Y+KNL+++ ++++LK ++ F + +FD+ +K +++GQA++ F
Sbjct: 428 PNCRLYVKNLSKQAEEKDLK-FIFGRFIDFSSETEKNMFDIRLMKEGRMKGQAFIGFPTE 486
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKS 89
A+ A++ + + +DKPM IQ+A+S
Sbjct: 487 DVAAQALKHVHGYVLHDKPMVIQFARS 513
>gi|389746772|gb|EIM87951.1| RNA-binding domain-containing protein [Stereum hirsutum FP-91666
SS1]
Length = 123
Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +++KNLN +I E+L Y LF +YG I + K RG A+VVF +V
Sbjct: 10 LPPGANRILFVKNLNYQITGEDL----YDLFGRYGSIRQIRMGNEQKTRGTAFVVFDDVM 65
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NA+ + F ++ + + Y
Sbjct: 66 DAKNALDHLNGFHLQERYIVVLY 88
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQSSMAMQAL 213
N ILF++NL ++ T L LF +Y +++RM + G AFV F+D + + A+ L
Sbjct: 15 NRILFVKNLNYQITGEDLYDLFGRYGSIRQIRMGNEQKTRGTAFVVFDDVMDAKNALDHL 74
Query: 214 QGFKI 218
GF +
Sbjct: 75 NGFHL 79
>gi|318087008|gb|ADV40096.1| 14 kDa subunit splicing factor 3b [Latrodectus hesperus]
Length = 121
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 61/116 (52%), Gaps = 14/116 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 11 LPPEVNRILYVRNLPYKITAEEM----YDIFGKYGAIRQIRLGNTPETRGTAFVVYEDIF 66
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRR 119
A NA + F ++ + + Y +S + +F + KKQEE + K++
Sbjct: 67 DAKNACDHLSGFNVCNRYLVVLYYQS--------NKAFKKVDTDKKQEEIDKVKKK 114
Score = 44.7 bits (104), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
R N + N IL+++NLP++ T+ + +F +Y +++R+ G AFV +ED
Sbjct: 5 RKTNVRLPPEVNRILYVRNLPYKITAEEMYDIFGKYGAIRQIRLGNTPETRGTAFVVYED 64
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 65 IFDAKNACDHLSGFNVCNRYLVVLYY 90
>gi|403347348|gb|EJY73094.1| RRM domain containing protein [Oxytricha trifallax]
Length = 429
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/79 (30%), Positives = 47/79 (59%), Gaps = 6/79 (7%)
Query: 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI--EAKPG----IAFVEFEDDVQSSMAM 210
N ++++ LPH+TT + +F+ + GFK++R+I + K G AF +FE Q++M +
Sbjct: 314 NTVYVEGLPHDTTEREVAHIFRPFLGFKQLRLIPRDTKDGQRVHFAFADFESVYQTTMVI 373
Query: 211 QALQGFKITPQNPMAITFA 229
LQG++ + + + F+
Sbjct: 374 NTLQGYRFHKDDIIGLQFS 392
>gi|392568043|gb|EIW61217.1| RNA-binding domain-containing protein [Trametes versicolor
FP-101664 SS1]
Length = 123
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 3 TGDIPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
T +PP N+ +++KNLN +I E+L Y LF +YG I + K RG A+VVF
Sbjct: 7 TTKLPPGANRILFVKNLNYQITGEDL----YDLFGRYGSIRQIRIGNDQKSRGTAFVVFD 62
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQY 86
+V A NA+ + F ++ + + Y
Sbjct: 63 DVMDAKNALDHLNGFHLQERYIVVLY 88
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N ILF++NL ++ T L LF +Y +++R+ + G AFV F+D + + A+ L
Sbjct: 15 NRILFVKNLNYQITGEDLYDLFGRYGSIRQIRIGNDQKSRGTAFVVFDDVMDAKNALDHL 74
Query: 214 QGFKI 218
GF +
Sbjct: 75 NGFHL 79
>gi|91090518|ref|XP_969863.1| PREDICTED: similar to 14 kDa subunit splicing factor 3b [Tribolium
castaneum]
gi|270013874|gb|EFA10322.1| hypothetical protein TcasGA2_TC012538 [Tribolium castaneum]
Length = 121
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEINRILYIRNLPYKITAEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y ++ +F + +KKQEE
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYQASK--------AFKKTDIEKKQEE 109
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
R AN + N IL+I+NLP++ T+ + +F +Y +++R+ G AFV +ED
Sbjct: 7 RKANVRLPPEINRILYIRNLPYKITAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYED 66
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 67 IFDAKNACDHLSGFNVCNRYLVVLYY 92
>gi|302694161|ref|XP_003036759.1| hypothetical protein SCHCODRAFT_12888 [Schizophyllum commune
H4-8]
gi|300110456|gb|EFJ01857.1| hypothetical protein SCHCODRAFT_12888 [Schizophyllum commune
H4-8]
Length = 121
Score = 53.5 bits (127), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 47/83 (56%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +++KNLN +I E+L Y LF +YGRI + K +G A+VVF +V
Sbjct: 9 LPPGANRILFVKNLNYQITGEDL----YDLFGRYGRIRQIRIGNEQKTKGTAFVVFEDVM 64
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NA+ + F ++ + + Y
Sbjct: 65 DAKNALDHLNGFHLQERYIVVLY 87
Score = 43.1 bits (100), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI--EAKPGIAFVEFEDDVQSSMAMQAL 213
N ILF++NL ++ T L LF +Y +++R+ + G AFV FED + + A+ L
Sbjct: 14 NRILFVKNLNYQITGEDLYDLFGRYGRIRQIRIGNEQKTKGTAFVVFEDVMDAKNALDHL 73
Query: 214 QGFKI 218
GF +
Sbjct: 74 NGFHL 78
>gi|242091796|ref|XP_002436388.1| hypothetical protein SORBIDRAFT_10g001660 [Sorghum bicolor]
gi|241914611|gb|EER87755.1| hypothetical protein SORBIDRAFT_10g001660 [Sorghum bicolor]
Length = 266
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG--------IAFVEFEDDVQSS 207
+N L+I+ +P T + +F+ + GF+EVR++ +P + FV+F + QS+
Sbjct: 163 SNTLYIEGIPTGCTRREVSHIFRPFVGFREVRLVNKEPKHPGGDPIVLCFVDFAEPTQSA 222
Query: 208 MAMQALQGFKI 218
+AM+ALQG+K
Sbjct: 223 IAMEALQGYKF 233
>gi|166240105|ref|XP_646953.2| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|165988745|gb|EAL73083.2| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 356
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/66 (37%), Positives = 39/66 (59%), Gaps = 3/66 (4%)
Query: 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQA 212
A P+ +LF++++P + E LF+ PG+ M+ KP AFVEF+D ++MAM
Sbjct: 6 APPSRVLFVKDIPQRVSYDAFENLFKSLPGYL---MMRRKPHFAFVEFKDREFATMAMIK 62
Query: 213 LQGFKI 218
G+KI
Sbjct: 63 FTGYKI 68
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 3/86 (3%)
Query: 135 QSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI--EAK 192
+GG+A ++ T P + LF+ NLP + T L +LF+ GF +R+I E K
Sbjct: 251 HYHGGSALP-PQSSISTTGMPCSTLFVSNLPKDVTERELSILFRFMRGFVGIRLINKEGK 309
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKI 218
+ F +F D S A++ LQGF++
Sbjct: 310 LPMCFCDFIDTQSSMFALEFLQGFRM 335
>gi|242208894|ref|XP_002470296.1| predicted protein [Postia placenta Mad-698-R]
gi|220730603|gb|EED84457.1| predicted protein [Postia placenta Mad-698-R]
Length = 123
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +++KNLN +I E+L Y LF +YG I + K RG A+VVF +V
Sbjct: 10 LPPGANRILFVKNLNYQITGEDL----YDLFGRYGSIRQIRIGNEQKTRGTAFVVFDDVM 65
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NA+ + F ++ + + Y
Sbjct: 66 DAKNALDHLNGFHLQERYIVVLY 88
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQSSMAMQAL 213
N ILF++NL ++ T L LF +Y +++R+ + G AFV F+D + + A+ L
Sbjct: 15 NRILFVKNLNYQITGEDLYDLFGRYGSIRQIRIGNEQKTRGTAFVVFDDVMDAKNALDHL 74
Query: 214 QGFKI 218
GF +
Sbjct: 75 NGFHL 79
>gi|320089797|pdb|3LQV|A Chain A, Branch Recognition By Sf3b14
gi|320089798|pdb|3LQV|B Chain B, Branch Recognition By Sf3b14
Length = 115
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 3 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 58
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NAV + F ++ + + Y + +F + KKK+E+
Sbjct: 59 DAKNAVDHLSGFNVSNRYLVVLYYNANR--------AFQKMDTKKKEEQ 99
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 38/66 (57%), Gaps = 2/66 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED + A+ L
Sbjct: 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHL 67
Query: 214 QGFKIT 219
GF ++
Sbjct: 68 SGFNVS 73
>gi|296479776|tpg|DAA21891.1| TPA: splicing factor 3B, 14 kDa subunit-like [Bos taurus]
Length = 125
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP NQ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+V++ ++
Sbjct: 13 LPPEVNQILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVIYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y + + +F + KKK+E+
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYNA--------NRAFQKMDTKKKEEQ 109
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNQILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVIYED 66
Query: 203 DVQSSMAMQALQGFKIT 219
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNVC 83
>gi|300175584|emb|CBK20895.2| unnamed protein product [Blastocystis hominis]
Length = 420
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 46/81 (56%), Gaps = 2/81 (2%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN T+Y++NL+ I KEEL L+ F + F V L T +++GQA++ F ++ A
Sbjct: 342 PNNTLYVRNLSPNISKEELV-DLFGRFERSPGEF-VYTLLTGRMKGQAFITFPDLETAEK 399
Query: 68 AVRQMQNFPFYDKPMRIQYAK 88
R++ F KP+ +QY +
Sbjct: 400 VKRKLHGFVLNGKPLLLQYKR 420
>gi|350537007|ref|NP_001233084.1| uncharacterized protein LOC100159957 [Acyrthosiphon pisum]
gi|239788958|dbj|BAH71130.1| ACYPI001295 [Acyrthosiphon pisum]
Length = 124
Score = 53.1 bits (126), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP RG A+VV+ ++
Sbjct: 14 LPPEINRVLYIRNLPYKITAEEM----YDIFGKYGAIRQIRVGNTPDTRGTAFVVYEDIF 69
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
A NA + F ++ + + Y +S
Sbjct: 70 DAKNACDHLSGFNVCNRYLVVLYYQS 95
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--KPGIAFVEFED 202
R N + N +L+I+NLP++ T+ + +F +Y +++R+ G AFV +ED
Sbjct: 8 RKTNVRLPPEINRVLYIRNLPYKITAEEMYDIFGKYGAIRQIRVGNTPDTRGTAFVVYED 67
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 68 IFDAKNACDHLSGFNVCNRYLVVLYY 93
>gi|413953430|gb|AFW86079.1| hypothetical protein ZEAMMB73_802063 [Zea mays]
Length = 262
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG--------IAFVEFEDDVQSS 207
+N L+I+ +P + T + +F+ + GF+EVR++ +P + FV+F + QS+
Sbjct: 160 SNTLYIEGVPSDCTRREVSHIFRPFVGFREVRLVNKEPKHPGGDPIVLCFVDFAEPTQSA 219
Query: 208 MAMQALQGFKI 218
+A+ ALQG+K
Sbjct: 220 IALDALQGYKF 230
>gi|223973687|gb|ACN31031.1| unknown [Zea mays]
Length = 221
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG--------IAFVEFEDDVQSS 207
+N L+I+ +P + T + +F+ + GF+EVR++ +P + FV+F + QS+
Sbjct: 119 SNTLYIEGVPSDCTRREVSHIFRPFVGFREVRLVNKEPKHPGGDPIVLCFVDFAEPTQSA 178
Query: 208 MAMQALQGFKI 218
+A+ ALQG+K
Sbjct: 179 IALDALQGYKF 189
>gi|212722122|ref|NP_001131419.1| uncharacterized protein LOC100192748 [Zea mays]
gi|194691466|gb|ACF79817.1| unknown [Zea mays]
Length = 270
Score = 53.1 bits (126), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 8/68 (11%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG--------IAFVEFEDDVQSS 207
+NILF+ LP + T + LF+ +PGFK++R++ +P + FVEFE+ +
Sbjct: 192 SNILFVDCLPTDCTRREVAHLFRCFPGFKDIRVVHKEPRRSGDKAYVLCFVEFENAKFAR 251
Query: 208 MAMQALQG 215
MQALQG
Sbjct: 252 TPMQALQG 259
>gi|326499832|dbj|BAJ90751.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326501246|dbj|BAJ98854.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 283
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK---PG-----IAFVEFEDDVQSS 207
+N L+I+ LP T + +F+ + GF+EVR++ + PG + FV+F+ Q++
Sbjct: 183 SNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQAT 242
Query: 208 MAMQALQGFKI 218
+A++ALQG+K
Sbjct: 243 IALEALQGYKF 253
>gi|225447446|ref|XP_002266343.1| PREDICTED: uncharacterized protein LOC100249524 [Vitis vinifera]
Length = 953
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/233 (24%), Positives = 111/233 (47%), Gaps = 35/233 (15%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PP++ +++ NL+ I + L F Q+G + D VA + R A++ F + A
Sbjct: 51 PPSRHLWVGNLSHSISENTLTDP----FLQFGEL-DTVAFQ--PGRSYAFINFKQEEDAI 103
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS 126
+A+R +Q F P++I++AK++ A D ++ ++++E+ R + +Q+
Sbjct: 104 HAMRSLQGFSVAGMPLKIEFAKAEKSSTASRDEDYL-----QRRDEQRSTIRGSPFSQRD 158
Query: 127 SMANGTGAQSNGGTAASF---RNANTQETAAPNNILFIQNLPHETTSSMLE----MLFQQ 179
S ++ G+ +F +++ + P +L+I P S+L+ +L +
Sbjct: 159 S-------RTRHGSPDTFYPDKSSISDRKGEPCEVLWI-GFP-----SLLKVDETILRKA 205
Query: 180 YPGFKEVRMIEAKPG--IAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
+ F E+ I + PG AFV+F + A + LQG K+ + I FAK
Sbjct: 206 FSPFGEIEKITSFPGRSYAFVQFRSVTAACRAKETLQG-KLFGNPRVHICFAK 257
>gi|224924352|gb|ACN69126.1| putative RNA-binding protein [Stomoxys calcitrans]
Length = 120
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 9 LPPEVNRLLYVRNLPYKITSEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 64
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y +S + +F + KKQEE
Sbjct: 65 DAKNACDHLSGFNVCNRYLVVLYYQS--------NKAFKRLDVDKKQEE 105
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N +L+++NLP++ TS + +F +Y +++R+ G AFV +ED + A L
Sbjct: 14 NRLLYVRNLPYKITSEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 73
Query: 214 QGFKITPQNPMAITF 228
GF + + + + +
Sbjct: 74 SGFNVCNRYLVVLYY 88
>gi|390601474|gb|EIN10868.1| pre-mRNA branch site protein p14 [Punctularia strigosozonata
HHB-11173 SS5]
Length = 123
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/83 (34%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +++KNLN I E+L Y LF +YG I + K RG A+VVF +V
Sbjct: 10 LPPGANRILFVKNLNYAITGEDL----YDLFGRYGSIRQIRIGNEQKTRGTAFVVFDDVM 65
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NA+ + F ++ + + Y
Sbjct: 66 DAKNALDHLNGFHLQERYIVVLY 88
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQSSMAMQAL 213
N ILF++NL + T L LF +Y +++R+ + G AFV F+D + + A+ L
Sbjct: 15 NRILFVKNLNYAITGEDLYDLFGRYGSIRQIRIGNEQKTRGTAFVVFDDVMDAKNALDHL 74
Query: 214 QGFKI 218
GF +
Sbjct: 75 NGFHL 79
>gi|410908825|ref|XP_003967891.1| PREDICTED: LOW QUALITY PROTEIN: RNA-binding protein 40-like
[Takifugu rubripes]
Length = 505
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/97 (27%), Positives = 57/97 (58%), Gaps = 7/97 (7%)
Query: 8 PNQTIYIKNLNEKIKKEELK----RSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
P +Y+KN+ +++++++LK R + + +FD++ +K +++GQA+V
Sbjct: 404 PTCRLYVKNIAKQVEEKDLKYIYGRYINPSSEEERNMFDIMLMKEGRMKGQAFVGLPSEQ 463
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS 100
+A A+R+ + YDKP+ +Q+A+S K+DG+
Sbjct: 464 SAEKALRETNGYILYDKPLIVQFARS---ARPKQDGT 497
>gi|444319608|ref|XP_004180461.1| hypothetical protein TBLA_0D04460 [Tetrapisispora blattae CBS 6284]
gi|387513503|emb|CCH60942.1| hypothetical protein TBLA_0D04460 [Tetrapisispora blattae CBS 6284]
Length = 133
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKLRGQAWVVFSEVT 63
++P N+T+YI+N+ EK+ +++ +LY L S +G I + V LRGQA+V F +
Sbjct: 39 NLPTNETLYIRNIPEKLLPSQVRINLYLLLSTFGEIIYIKVGKPRSSLRGQAFVTFRTID 98
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKS 91
A A + F+ + + +++++ S
Sbjct: 99 EAHVAKTALDQELFFGQSLHLEFSRQPS 126
>gi|332374910|gb|AEE62596.1| unknown [Dendroctonus ponderosae]
Length = 121
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEINRILYVRNLPYKITGEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y ++ + +F + KKQEE
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYQA--------NKAFKKTDLDKKQEE 109
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 42/86 (48%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--KPGIAFVEFED 202
R N + N IL+++NLP++ T + +F +Y +++R+ G AFV +ED
Sbjct: 7 RKTNVRLPPEINRILYVRNLPYKITGEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYED 66
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 67 IFDAKNACDHLSGFNVCNRYLVVLYY 92
>gi|357148760|ref|XP_003574884.1| PREDICTED: uncharacterized protein LOC100836479 [Brachypodium
distachyon]
Length = 296
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK---PG-----IAFVEFEDDVQSS 207
+N L+I+ LP T + +F+ + GF+EVR++ + PG + FV+F+ Q++
Sbjct: 196 SNTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDSPAQAT 255
Query: 208 MAMQALQGFKI 218
+A++ALQG+K
Sbjct: 256 IALEALQGYKF 266
>gi|425868439|gb|AFY04349.1| sans fille, partial [Scathophaga stercoraria]
Length = 87
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/99 (40%), Positives = 47/99 (47%), Gaps = 12/99 (12%)
Query: 79 DKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNG 138
DKPMR AK+ SD VAK GSF KK K + ++ ++ S N A
Sbjct: 1 DKPMRXAXAKTDSDVVAKMKGSFKEXPKKLKPPKPVXPVEDKKDKKKKS-XNAENA---- 55
Query: 139 GTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
N NTQ PN ILF+ NLP ET ML MLF
Sbjct: 56 -------NPNTQTEQPPNQILFLTNLPEETNEMMLSMLF 87
>gi|339237409|ref|XP_003380259.1| Pre-mRNA branch site protein p14 [Trichinella spiralis]
gi|316976934|gb|EFV60125.1| Pre-mRNA branch site protein p14 [Trichinella spiralis]
Length = 126
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 59/114 (51%), Gaps = 12/114 (10%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y+KNL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 11 LPPEVNRILYVKNLPYKITGEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 66
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
A NA + F ++ + + Y ++ + + EK KK+ E+ + K
Sbjct: 67 DAKNACDHLSGFNVCNRYLVVLYYQANKAYLRMDT------EKSKKELERVKAK 114
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--KPGIAFVEFED 202
R AN + N IL+++NLP++ T + +F +Y +++R+ G AFV +ED
Sbjct: 5 RKANVRLPPEVNRILYVKNLPYKITGEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYED 64
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 65 IFDAKNACDHLSGFNVCNRYLVVLYY 90
>gi|356527581|ref|XP_003532387.1| PREDICTED: protein MEI2-like 1-like [Glycine max]
Length = 955
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P++T++++N+N ++ ELK LF QYG I + K RG + + ++ AA N
Sbjct: 252 PSRTLFVRNINSNVEDSELK----ALFEQYGDIRTIYTAS--KHRGFVMISYQDLRAAQN 305
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDG 99
A++ +QN P + + I Y+ K + K+ G
Sbjct: 306 AMQALQNRPLGSRKLDIHYSIPKVNAPEKDIG 337
Score = 36.6 bits (83), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 30/60 (50%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
P+ LF++N+ S L+ LF+QY + + G + ++D + AMQALQ
Sbjct: 252 PSRTLFVRNINSNVEDSELKALFEQYGDIRTIYTASKHRGFVMISYQDLRAAQNAMQALQ 311
>gi|300120730|emb|CBK20284.2| unnamed protein product [Blastocystis hominis]
Length = 139
Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 40/152 (26%), Positives = 70/152 (46%), Gaps = 20/152 (13%)
Query: 79 DKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNG 138
++P+ + +AK++SD + K +G F K+ Q R EE N
Sbjct: 8 NRPVTVTFAKTESDIILKREGRFT-YVKRTFQSYAEIHAREMEE--------------NE 52
Query: 139 GTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFV 198
G AA+ R N PNN L + +LP T +L + Q Y GF ++ ++ + GIAFV
Sbjct: 53 GRAAAARIHNNP----PNNKLILFDLPTTITKEVLLPIVQPYVGFHDLGIVPGR-GIAFV 107
Query: 199 EFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
+F + + + A++ + + ++AK
Sbjct: 108 DFNTIHNAEVCLSAIKSATLPTGEKIYASYAK 139
>gi|449447844|ref|XP_004141677.1| PREDICTED: U2 small nuclear ribonucleoprotein B''-like [Cucumis
sativus]
Length = 262
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 109/241 (45%), Gaps = 32/241 (13%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T++I L + +K R ++ LF + FD LK RG V F+ +AV
Sbjct: 27 TLFISGLPDDVKA----REIHNLFRRRPG-FDSCQLKYTG-RGNQVVAFATFYNHQSAVT 80
Query: 71 QMQNF------PFYDKPMRIQYAKSKSDCVAKEDG-SFVPREKKKKQEEKA--------- 114
+ P + I+ A+S S K G ++V +K+KK + +
Sbjct: 81 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKTDANSQETSSDDGG 140
Query: 115 -ERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSML 173
E +++AQQS+ A T A + +A + + + + P + LFI NL L
Sbjct: 141 SEPDEPSKKAQQSNEAVVTPANA---ISAPYEH-HEKNDGGPCSTLFIANLGPNCNEDEL 196
Query: 174 EMLFQQYPGFKEVRMIEAKPG--IAFVEFEDDVQSSMAMQALQGFKI--TPQNPMAITFA 229
+ + +YPGF V + AK G +AF +FED Q+S M+ LQG + + + M I +A
Sbjct: 197 KEVLCKYPGFN-VLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYA 255
Query: 230 K 230
+
Sbjct: 256 R 256
Score = 42.7 bits (99), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG---IAFVEFEDDVQSSMAMQAL 213
N LFI LP + + + LF++ PGF ++ G +AF F + + A+ AL
Sbjct: 26 NTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHAL 85
Query: 214 QGFKITPQN 222
G K PQ+
Sbjct: 86 NGVKFDPQS 94
>gi|224123704|ref|XP_002319145.1| predicted protein [Populus trichocarpa]
gi|222857521|gb|EEE95068.1| predicted protein [Populus trichocarpa]
Length = 346
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/90 (32%), Positives = 48/90 (53%), Gaps = 9/90 (10%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRI------FDVVALKTPKLRGQAWVVFSE 61
P +YIKNL++++ ++ Y S +G I V ++ ++RGQA+V FS
Sbjct: 255 PASVLYIKNLDKEVVADDF---FYIFGSLFGSIDAAKSGLSVKLMQEGRMRGQAFVTFSS 311
Query: 62 VTAASNAVRQMQNFPFYDKPMRIQYAKSKS 91
V A A+ + + F DKPM IQ+ ++ S
Sbjct: 312 VELAHQALNLVNGYVFKDKPMIIQFGRNPS 341
>gi|157111478|ref|XP_001651583.1| splicing factor SC35, putative [Aedes aegypti]
gi|108878352|gb|EAT42577.1| AAEL005909-PA [Aedes aegypti]
Length = 126
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI +E+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRVLYVRNLPYKITSDEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y +S +F + KKQEE
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYQSTK--------AFKRLDVDKKQEE 109
Score = 43.9 bits (102), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--KPGIAFVEFEDDVQSSMAMQAL 213
N +L+++NLP++ TS + +F +Y +++R+ G AFV +ED + A L
Sbjct: 18 NRVLYVRNLPYKITSDEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 77
Query: 214 QGFKITPQNPMAITF 228
GF + + + + +
Sbjct: 78 SGFNVCNRYLVVLYY 92
>gi|225714578|gb|ACO13135.1| Pre-mRNA branch site p14-like protein [Lepeophtheirus salmonis]
gi|290560992|gb|ADD37898.1| Pre-mRNA branch site p14-like protein [Lepeophtheirus salmonis]
Length = 126
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRVLYIRNLPYKISAEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
A NA + F ++ + + Y ++
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYQA 94
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--KPGIAFVEFEDDVQSSMAMQAL 213
N +L+I+NLP++ ++ + +F +Y +++R+ G AFV +ED + A L
Sbjct: 18 NRVLYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 77
Query: 214 QGFKIT 219
GF +
Sbjct: 78 SGFNVC 83
>gi|393216080|gb|EJD01571.1| pre-mRNA branch site protein p14 [Fomitiporia mediterranea MF3/22]
Length = 123
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 31/117 (26%), Positives = 61/117 (52%), Gaps = 9/117 (7%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N+ +++KNLN I ++L Y LF +YG I + +G A+VV+ +VT A NA
Sbjct: 15 NRILFVKNLNYNITGDDL----YELFGRYGSIRQIRLGVESNTKGTAFVVYDDVTDAKNA 70
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQ 125
+ + F ++ + + Y +++D + V E +++EE A+ K + + ++
Sbjct: 71 LEHLNGFHLQERYIVVLYHMP-----SRQDAAAVKAEIARREEELAQLKAKHDIGEE 122
Score = 46.2 bits (108), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/72 (33%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 149 TQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM-IEAKP-GIAFVEFEDDVQS 206
T+ A N ILF++NL + T L LF +Y +++R+ +E+ G AFV ++D +
Sbjct: 8 TKLPAGANRILFVKNLNYNITGDDLYELFGRYGSIRQIRLGVESNTKGTAFVVYDDVTDA 67
Query: 207 SMAMQALQGFKI 218
A++ L GF +
Sbjct: 68 KNALEHLNGFHL 79
>gi|330840143|ref|XP_003292080.1| hypothetical protein DICPUDRAFT_89664 [Dictyostelium purpureum]
gi|325077715|gb|EGC31410.1| hypothetical protein DICPUDRAFT_89664 [Dictyostelium purpureum]
Length = 328
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/79 (32%), Positives = 44/79 (55%), Gaps = 2/79 (2%)
Query: 146 NANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI--EAKPGIAFVEFEDD 203
N+ + P LF+ NLP + T + +LF+ GF +R+I E K + F +F D
Sbjct: 234 NSGGHINSPPCPTLFVSNLPKDVTEREVSILFRFMAGFVGIRLINKEGKLPMCFCDFVDS 293
Query: 204 VQSSMAMQALQGFKITPQN 222
++MA+ LQGF++ P++
Sbjct: 294 QSAAMALDFLQGFRMDPKD 312
Score = 45.8 bits (107), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 37/61 (60%), Gaps = 3/61 (4%)
Query: 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQAL 213
AP+ ++F++++P + + E LF+ PG+ +R KP AF+EF+D ++MAM
Sbjct: 6 APSRVIFVKDIPQNISHHIFEDLFRVLPGYLTMR---RKPHFAFIEFKDREFATMAMVKY 62
Query: 214 Q 214
Q
Sbjct: 63 Q 63
>gi|110739368|dbj|BAF01596.1| hypothetical protein [Arabidopsis thaliana]
Length = 823
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 106/232 (45%), Gaps = 30/232 (12%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
G PP++ +++ NL I L+R L F ++G ++ +L R A+V F+
Sbjct: 17 GRNPPSRHLWVGNLPHGI----LERELADRFLRFG---ELESLAFQPGRSYAFVNFNHDE 69
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS-KSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
A A+ +Q FP P+RI++AK+ KS ++ D + + +E+ R +
Sbjct: 70 DAFAAIESLQGFPLSGNPLRIEFAKAEKSSAGSRTDDIY-------RHDEQRSAARGSSF 122
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH--ETTSSMLEMLFQQY 180
Q+ S + + + RNA P+ +L+I P + ++L +F
Sbjct: 123 VQRDSRMRYESPDTYSKSKMNDRNAE------PSEVLYI-GFPASLKVDDALLRNVFSS- 174
Query: 181 PGFKEVRMIEAKPG--IAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
F E+ + PG AFV+F + + + A ++LQG K+ + I FAK
Sbjct: 175 --FGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQG-KLFGNPRVHICFAK 223
>gi|449480586|ref|XP_004155937.1| PREDICTED: LOW QUALITY PROTEIN: U2 small nuclear ribonucleoprotein
B''-like [Cucumis sativus]
Length = 262
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 66/241 (27%), Positives = 108/241 (44%), Gaps = 32/241 (13%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T++I L + +K R ++ LF + FD LK RG V F+ +AV
Sbjct: 27 TLFISGLPDDVKA----REIHNLFRRRPG-FDSCQLKYTG-RGNQVVAFATFYNHQSAVT 80
Query: 71 QMQNF------PFYDKPMRIQYAKSKSDCVAKEDG-SFVPREKKKK----------QEEK 113
+ P + I+ A+S S K G ++V +K+KK +
Sbjct: 81 ALHALNGVKFDPQSGSVLHIELARSNSRRKHKPGGGAYVVIDKRKKPXANSQETSSDDGG 140
Query: 114 AERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSML 173
+E +++AQQS+ A T A + +A + + + + P + LFI NL L
Sbjct: 141 SEPDEPSKKAQQSNEAVVTPANA---ISAPYEH-HEKNDGGPCSTLFIANLGPNCNEDEL 196
Query: 174 EMLFQQYPGFKEVRMIEAKPG--IAFVEFEDDVQSSMAMQALQG--FKITPQNPMAITFA 229
+ + +YPGF V + AK G +AF +FED Q+S M+ LQG + + M I +A
Sbjct: 197 KEVLCKYPGFN-VLKLRAKSGMPVAFADFEDIEQASKVMEELQGSVLPSSDRGGMHIEYA 255
Query: 230 K 230
+
Sbjct: 256 R 256
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 3/69 (4%)
Query: 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG---IAFVEFEDDVQSSMAMQAL 213
N LFI LP + + + LF++ PGF ++ G +AF F + + A+ AL
Sbjct: 26 NTLFISGLPDDVKAREIHNLFRRRPGFDSCQLKYTGRGNQVVAFATFYNHQSAVTALHAL 85
Query: 214 QGFKITPQN 222
G K PQ+
Sbjct: 86 NGVKFDPQS 94
>gi|226472060|emb|CAX77068.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472062|emb|CAX77069.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472064|emb|CAX77070.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472066|emb|CAX77071.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472072|emb|CAX77074.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
Length = 155
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 141 AASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEF 200
AA +R+ T+ ++I +LP E + LE +F++Y + V + PG AFVEF
Sbjct: 2 AARYRDVGTK--------VYIGDLPREASERELERIFREYGRLRNVWVARNPPGFAFVEF 53
Query: 201 EDDVQSSMAMQALQG 215
ED +S A++ L G
Sbjct: 54 EDAADASDAVRELDG 68
>gi|218197575|gb|EEC80002.1| hypothetical protein OsI_21654 [Oryza sativa Indica Group]
Length = 232
Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG--------IAFVEFEDDVQSS 207
+NILF+ LP + T + LF+ + GFK++R++ +P + FVEF D +
Sbjct: 127 SNILFVDGLPTDCTRREVAHLFRPFVGFKDIRLVHKEPRHSSDRAYVLCFVEFSDAKCAI 186
Query: 208 MAMQALQGFKITPQNPMA----ITFAK 230
AM+ALQ ++ + P A I FA+
Sbjct: 187 TAMEALQEYRFDERKPDAAVLNIKFAR 213
>gi|225710692|gb|ACO11192.1| Pre-mRNA branch site p14-like protein [Caligus rogercresseyi]
Length = 124
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 12 LPPEVNRVLYIRNLPYKISAEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 67
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NA + F ++ + + Y
Sbjct: 68 DAKNACDHLSGFNVCNRYLVVLY 90
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N +L+I+NLP++ ++ + +F +Y +++R+ G AFV +ED + A L
Sbjct: 17 NRVLYIRNLPYKISAEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 76
Query: 214 QGFKIT 219
GF +
Sbjct: 77 SGFNVC 82
>gi|413953429|gb|AFW86078.1| hypothetical protein ZEAMMB73_802063 [Zea mays]
Length = 130
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG--------IAFVEFEDDVQSS 207
+N L+I+ +P + T + +F+ + GF+EVR++ +P + FV+F + QS+
Sbjct: 28 SNTLYIEGVPSDCTRREVSHIFRPFVGFREVRLVNKEPKHPGGDPIVLCFVDFAEPTQSA 87
Query: 208 MAMQALQGFKI 218
+A+ ALQG+K
Sbjct: 88 IALDALQGYKF 98
>gi|409079658|gb|EKM80019.1| hypothetical protein AGABI1DRAFT_113250 [Agaricus bisporus var.
burnettii JB137-S8]
gi|426198578|gb|EKV48504.1| hypothetical protein AGABI2DRAFT_192107 [Agaricus bisporus var.
bisporus H97]
Length = 122
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/86 (33%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 3 TGDIPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
T +PP N+ +++KNLN I E+L Y LF +YG I + K +G A+VVF
Sbjct: 7 TSKLPPGANRILFVKNLNYNITGEDL----YDLFGRYGSIRQIRIGNEQKTKGTAFVVFD 62
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQY 86
+V A NA+ + F ++ + + Y
Sbjct: 63 DVMDAKNALDHLNGFHLQERYIVVLY 88
Score = 42.7 bits (99), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 36/65 (55%), Gaps = 2/65 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI--EAKPGIAFVEFEDDVQSSMAMQAL 213
N ILF++NL + T L LF +Y +++R+ + G AFV F+D + + A+ L
Sbjct: 15 NRILFVKNLNYNITGEDLYDLFGRYGSIRQIRIGNEQKTKGTAFVVFDDVMDAKNALDHL 74
Query: 214 QGFKI 218
GF +
Sbjct: 75 NGFHL 79
>gi|29841408|gb|AAP06440.1| similar to NM_006276 splicing factor, arginine/serine-rich 7
[Schistosoma japonicum]
gi|226472076|emb|CAX77076.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472078|emb|CAX77077.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472080|emb|CAX77078.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472082|emb|CAX77079.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
gi|226472084|emb|CAX77080.1| Splicing factor, arginine/serine-rich 7 [Schistosoma japonicum]
Length = 169
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 141 AASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEF 200
AA +R+ T+ ++I +LP E + LE +F++Y + V + PG AFVEF
Sbjct: 2 AARYRDVGTK--------VYIGDLPREASERELERIFREYGRLRNVWVARNPPGFAFVEF 53
Query: 201 EDDVQSSMAMQALQG 215
ED +S A++ L G
Sbjct: 54 EDAADASDAVRELDG 68
>gi|42566726|ref|NP_193001.2| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
gi|332657759|gb|AEE83159.1| RNA recognition motif (RRM)-containing protein [Arabidopsis
thaliana]
Length = 823
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 106/232 (45%), Gaps = 30/232 (12%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
G PP++ +++ NL I L+R L F ++G ++ +L R A+V F+
Sbjct: 17 GRNPPSRHLWVGNLPHGI----LERELADRFLRFG---ELESLAFQPGRSYAFVNFNHDE 69
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS-KSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
A A+ +Q FP P+RI++AK+ KS ++ D + + +E+ R +
Sbjct: 70 DAFAAIESLQGFPLSGNPLRIEFAKAEKSSTGSRTDDIY-------RHDEQRSAARGSSF 122
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH--ETTSSMLEMLFQQY 180
Q+ S + + + RNA P+ +L+I P + ++L +F
Sbjct: 123 VQRDSRMRYESPDTYSKSKMNDRNAE------PSEVLYI-GFPASLKVDDALLRNVFSS- 174
Query: 181 PGFKEVRMIEAKPG--IAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
F E+ + PG AFV+F + + + A ++LQG K+ + I FAK
Sbjct: 175 --FGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQG-KLFGNPRVHICFAK 223
>gi|168018462|ref|XP_001761765.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162687136|gb|EDQ73521.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 427
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/97 (30%), Positives = 55/97 (56%), Gaps = 7/97 (7%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGR---IFDVVALKTPKLRGQAWVVFSEVTA 64
P T+YIKNL + + +L ++ F YGR I+ + ++ +++GQA+V F++V
Sbjct: 315 PTNTVYIKNLAADVTEPDLI-GIFGRFETYGRPKLIYRL--MQRGRMKGQAFVTFADVET 371
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKS-KSDCVAKEDGS 100
A+ A++ + + KPM I++A+ K A E+G
Sbjct: 372 ATKALKLVHGYILKAKPMVIEFARGVKPPLSASEEGG 408
>gi|110738193|dbj|BAF01027.1| hypothetical protein [Arabidopsis thaliana]
Length = 823
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 59/232 (25%), Positives = 106/232 (45%), Gaps = 30/232 (12%)
Query: 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
G PP++ +++ NL I L+R L F ++G ++ +L R A+V F+
Sbjct: 17 GRNPPSRHLWVGNLPHGI----LERELADRFLRFG---ELESLAFQPGRSYAFVNFNHDE 69
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS-KSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
A A+ +Q FP P+RI++AK+ KS ++ D + + +E+ R +
Sbjct: 70 DAFAAIESLQGFPLSGNPLRIEFAKAEKSSTGSRTDDIY-------RHDEQRSAARGSSF 122
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH--ETTSSMLEMLFQQY 180
Q+ S + + + RNA P+ +L+I P + ++L +F
Sbjct: 123 VQRDSRMRYESPDTYSKSKMNDRNAE------PSEVLYI-GFPASLKVDDALLRNVFSS- 174
Query: 181 PGFKEVRMIEAKPG--IAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
F E+ + PG AFV+F + + + A ++LQG K+ + I FAK
Sbjct: 175 --FGEITKVTVFPGRSYAFVQFRNLMAACKAKESLQG-KLFGNPRVHICFAK 223
>gi|62857825|ref|NP_001017249.1| splicing factor 3B, 14 kDa subunit [Xenopus (Silurana) tropicalis]
gi|89267868|emb|CAJ82723.1| splicing factor 3B, 14 kDa subunit (sf3b14) [Xenopus (Silurana)
tropicalis]
gi|169641810|gb|AAI60412.1| hypothetical protein LOC550003 [Xenopus (Silurana) tropicalis]
Length = 125
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIRNLPYKITGEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y + +F + KKK+E+
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYNANR--------AFQKMDTKKKEEQ 109
Score = 41.6 bits (96), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+I+NLP++ T + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITGEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKIT 219
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNVC 83
>gi|345326440|ref|XP_001510154.2| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Ornithorhynchus anatinus]
Length = 527
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQIVEEFSKVTEGLTDVILYHQ 278
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 337
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 338 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 372
>gi|256089261|ref|XP_002580731.1| arginine/serine-rich splicing factor [Schistosoma mansoni]
gi|350646105|emb|CCD59207.1| arginine/serine-rich splicing factor, putative [Schistosoma
mansoni]
Length = 157
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 141 AASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEF 200
AA +R+ T+ ++I +LP E + LE +F++Y + V + PG AFVEF
Sbjct: 2 AARYRDVGTK--------VYIGDLPREASERELERIFREYGRLRNVWVARNPPGFAFVEF 53
Query: 201 EDDVQSSMAMQALQG 215
ED +S A++ L G
Sbjct: 54 EDAADASDAVRELDG 68
>gi|297279397|ref|XP_001108341.2| PREDICTED: RNA-binding protein 40-like [Macaca mulatta]
Length = 511
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSL--YCLFSQYGR--IFDVVALKTPKLRGQAWVVFSEVT 63
PN IY+KNL + +++++LK Y FS + +FD+ +K +++GQA++
Sbjct: 411 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEK 470
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
AA+ A+++ + + KPM +Q+A+S
Sbjct: 471 AATKALKEANGYVLFGKPMVVQFARS 496
>gi|335772422|gb|AEH58061.1| pre-mRNA branch site protein p14-like protein [Equus caballus]
Length = 109
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 49/92 (53%), Gaps = 6/92 (6%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVA 95
A NA + F ++ + + Y + +A
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYNANRVSIA 100
Score = 41.2 bits (95), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP---GIAFVEFE 201
+ AN + N IL+I+NLP++ T+ + +F +Y +++R + P G A+V +E
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIR-VGNTPETRGTAYVVYE 65
Query: 202 DDVQSSMAMQALQGFKIT 219
D + A L GF +
Sbjct: 66 DIFDAKNACDHLSGFNVC 83
>gi|346472025|gb|AEO35857.1| hypothetical protein [Amblyomma maculatum]
Length = 120
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 16/116 (13%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 11 LPPEVNRILYVRNLPYKISGEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 66
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF--VPREKKKKQEEKAERK 117
A NA + F ++ + + Y + +F V +EKKK++ E+ ++K
Sbjct: 67 DAKNACDHLSGFNVCNRYLVVLYYQPTK--------AFKRVDQEKKKEEIERVKKK 114
Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N IL+++NLP++ + + +F +Y +++R+ G AFV +ED + A L
Sbjct: 16 NRILYVRNLPYKISGEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 75
Query: 214 QGFKITPQNPMAITF 228
GF + + + + +
Sbjct: 76 SGFNVCNRYLVVLYY 90
>gi|256089259|ref|XP_002580730.1| arginine/serine-rich splicing factor [Schistosoma mansoni]
gi|350646106|emb|CCD59208.1| arginine/serine-rich splicing factor, putative [Schistosoma
mansoni]
Length = 171
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 141 AASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEF 200
AA +R+ T+ ++I +LP E + LE +F++Y + V + PG AFVEF
Sbjct: 2 AARYRDVGTK--------VYIGDLPREASERELERIFREYGRLRNVWVARNPPGFAFVEF 53
Query: 201 EDDVQSSMAMQALQG 215
ED +S A++ L G
Sbjct: 54 EDAADASDAVRELDG 68
>gi|260827026|ref|XP_002608466.1| hypothetical protein BRAFLDRAFT_283159 [Branchiostoma floridae]
gi|229293817|gb|EEN64476.1| hypothetical protein BRAFLDRAFT_283159 [Branchiostoma floridae]
Length = 925
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 56/232 (24%), Positives = 93/232 (40%), Gaps = 72/232 (31%)
Query: 3 TGDIPPN------QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPK--LRGQ 54
TGD+P + +++++ NL+ + + K + +FS+ G + DV T K RG
Sbjct: 640 TGDVPVHDPDRERRSVFVSNLSYSLHNPQDK--MREVFSECGEVADVRLAFTSKKKFRGF 697
Query: 55 AWVVFSEVTAASNAV----RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQ 110
+V F E +AA A+ ++++ P + P C+ K
Sbjct: 698 CYVEFKEESAAVKALGFDHKEVEGRPLFVSP-----------CIDKR------------- 733
Query: 111 EEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTS 170
G F+ A E N LF+ NLP+ T
Sbjct: 734 --------------------------KGDKFHGFQYATKLE----KNKLFVSNLPYTVTK 763
Query: 171 SMLEMLFQQYPGFKEVRMI---EAKP-GIAFVEFEDDVQSSMAMQALQGFKI 218
LE +F+Q+ + VRM+ KP G+A+VE+ED+ +S A+ G I
Sbjct: 764 EALENIFKQHGPLRGVRMVTYRSGKPKGLAYVEYEDEQTASQAVLKTDGLMI 815
>gi|355558218|gb|EHH14998.1| hypothetical protein EGK_01023, partial [Macaca mulatta]
Length = 461
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 11/106 (10%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSL--YCLFS-QYGRI-FDVVALKTPKLRGQAWVVFSEVT 63
PN IY+KNL + +++++LK Y FS + RI FD+ +K +++GQA++
Sbjct: 362 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEK 421
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
AA+ A+++ + + KPM +Q+A+S K+D P+E K+K
Sbjct: 422 AATKALKEANGYVLFGKPMVVQFARSAR---PKQD----PKEGKRK 460
>gi|7706326|ref|NP_057131.1| pre-mRNA branch site protein p14 [Homo sapiens]
gi|13384692|ref|NP_079599.1| pre-mRNA branch site protein p14 [Mus musculus]
gi|50344788|ref|NP_001002067.1| pre-mRNA branch site protein p14 [Danio rerio]
gi|114051091|ref|NP_001039482.1| pre-mRNA branch site protein p14 [Bos taurus]
gi|386781011|ref|NP_001247813.1| pre-mRNA branch site protein p14 [Macaca mulatta]
gi|403420592|ref|NP_001258151.1| uncharacterized protein LOC100365504 [Rattus norvegicus]
gi|50745107|ref|XP_419986.1| PREDICTED: pre-mRNA branch site protein p14 [Gallus gallus]
gi|55595200|ref|XP_515324.1| PREDICTED: pre-mRNA branch site protein p14-like isoform 2 [Pan
troglodytes]
gi|57098153|ref|XP_532889.1| PREDICTED: pre-mRNA branch site protein p14 [Canis lupus
familiaris]
gi|149408929|ref|XP_001510459.1| PREDICTED: pre-mRNA branch site protein p14-like isoform 1
[Ornithorhynchus anatinus]
gi|149727736|ref|XP_001503233.1| PREDICTED: pre-mRNA branch site protein p14-like [Equus caballus]
gi|224048823|ref|XP_002188838.1| PREDICTED: pre-mRNA branch site protein p14-like [Taeniopygia
guttata]
gi|291387166|ref|XP_002710108.1| PREDICTED: splicing factor 3B, 14 kDa subunit [Oryctolagus
cuniculus]
gi|296224379|ref|XP_002758038.1| PREDICTED: pre-mRNA branch site protein p14 [Callithrix jacchus]
gi|297668080|ref|XP_002812282.1| PREDICTED: pre-mRNA branch site protein p14-like [Pongo abelii]
gi|301756058|ref|XP_002913845.1| PREDICTED: pre-mRNA branch site protein p14-like [Ailuropoda
melanoleuca]
gi|311253034|ref|XP_003125412.1| PREDICTED: pre-mRNA branch site protein p14-like [Sus scrofa]
gi|326916588|ref|XP_003204588.1| PREDICTED: pre-mRNA branch site protein p14-like [Meleagris
gallopavo]
gi|327261123|ref|XP_003215381.1| PREDICTED: pre-mRNA branch site protein p14-like [Anolis
carolinensis]
gi|332242914|ref|XP_003270625.1| PREDICTED: pre-mRNA branch site protein p14-like [Nomascus
leucogenys]
gi|344280379|ref|XP_003411961.1| PREDICTED: pre-mRNA branch site protein p14-like [Loxodonta
africana]
gi|348574810|ref|XP_003473183.1| PREDICTED: pre-mRNA branch site protein p14-like [Cavia porcellus]
gi|354471023|ref|XP_003497743.1| PREDICTED: pre-mRNA branch site protein p14-like [Cricetulus
griseus]
gi|395828654|ref|XP_003787483.1| PREDICTED: pre-mRNA branch site protein p14-like [Otolemur
garnettii]
gi|397513567|ref|XP_003827083.1| PREDICTED: pre-mRNA branch site protein p14-like [Pan paniscus]
gi|402890210|ref|XP_003908383.1| PREDICTED: pre-mRNA branch site protein p14-like [Papio anubis]
gi|403288191|ref|XP_003935296.1| PREDICTED: pre-mRNA branch site protein p14-like [Saimiri
boliviensis boliviensis]
gi|410955738|ref|XP_003984508.1| PREDICTED: pre-mRNA branch site protein p14-like [Felis catus]
gi|426223204|ref|XP_004005767.1| PREDICTED: pre-mRNA branch site protein p14-like [Ovis aries]
gi|12585536|sp|Q9Y3B4.1|PM14_HUMAN RecName: Full=Pre-mRNA branch site protein p14; AltName: Full=SF3b
14 kDa subunit
gi|31563064|sp|P59708.1|PM14_MOUSE RecName: Full=Pre-mRNA branch site protein p14; AltName: Full=SF3b
14 kDa subunit
gi|88192891|pdb|2F9D|A Chain A, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
gi|88192892|pdb|2F9D|B Chain B, 2.5 Angstrom Resolution Structure Of The Spliceosomal
Protein P14 Bound To Region Of Sf3b155
gi|4929689|gb|AAD34105.1|AF151868_1 CGI-110 protein [Homo sapiens]
gi|6841570|gb|AAF29138.1|AF161523_1 HSPC175 [Homo sapiens]
gi|9963797|gb|AAG09698.1|AF184213_1 ht006 protein [Homo sapiens]
gi|15278118|gb|AAK94041.1|AF401310_1 pre-mRNA branch site protein p14 [Homo sapiens]
gi|12832311|dbj|BAB22052.1| unnamed protein product [Mus musculus]
gi|12834501|dbj|BAB22936.1| unnamed protein product [Mus musculus]
gi|15930037|gb|AAH15463.1| Splicing factor 3B, 14 kDa subunit [Homo sapiens]
gi|18044537|gb|AAH19535.1| RIKEN cDNA 0610009D07 gene [Mus musculus]
gi|47939375|gb|AAH71385.1| Splicing factor 3B [Danio rerio]
gi|62822095|gb|AAY14664.1| unknown [Homo sapiens]
gi|74196049|dbj|BAE30577.1| unnamed protein product [Mus musculus]
gi|86438283|gb|AAI12549.1| Splicing factor 3B, 14 kDa subunit [Bos taurus]
gi|119621172|gb|EAX00767.1| splicing factor 3B, 14 kDa subunit [Homo sapiens]
gi|148669408|gb|EDL01355.1| RIKEN cDNA 0610009D07 [Mus musculus]
gi|149050875|gb|EDM03048.1| rCG61901 [Rattus norvegicus]
gi|189053227|dbj|BAG34849.1| unnamed protein product [Homo sapiens]
gi|261858822|dbj|BAI45933.1| pre-mRNA branch site protein p14 [synthetic construct]
gi|296482273|tpg|DAA24388.1| TPA: splicing factor 3B, 14 kDa subunit [Bos taurus]
gi|300676844|gb|ADK26719.1| splicing factor 3B, 14 kDa subunit [Zonotrichia albicollis]
gi|300676940|gb|ADK26811.1| splicing factor 3B, 14 kDa subunit [Zonotrichia albicollis]
gi|325463841|gb|ADZ15691.1| splicing factor 3B, 14 kDa subunit [synthetic construct]
gi|344235775|gb|EGV91878.1| Pre-mRNA branch site protein p14 [Cricetulus griseus]
gi|355565504|gb|EHH21933.1| hypothetical protein EGK_05107 [Macaca mulatta]
gi|355751150|gb|EHH55405.1| hypothetical protein EGM_04613 [Macaca fascicularis]
gi|380813652|gb|AFE78700.1| pre-mRNA branch site protein p14 [Macaca mulatta]
gi|383419083|gb|AFH32755.1| pre-mRNA branch site protein p14 [Macaca mulatta]
gi|384947612|gb|AFI37411.1| pre-mRNA branch site protein p14 [Macaca mulatta]
gi|387017758|gb|AFJ50997.1| Pre-mRNA branch site protein p14 [Crotalus adamanteus]
gi|410215904|gb|JAA05171.1| splicing factor 3B, 14 kDa subunit [Pan troglodytes]
gi|410258838|gb|JAA17386.1| splicing factor 3B, 14 kDa subunit [Pan troglodytes]
gi|410287438|gb|JAA22319.1| splicing factor 3B, 14 kDa subunit [Pan troglodytes]
gi|410337113|gb|JAA37503.1| splicing factor 3B, 14 kDa subunit [Pan troglodytes]
gi|417395967|gb|JAA45017.1| Putative splicing factor 3b 14 kda subunit-like protein [Desmodus
rotundus]
gi|431911879|gb|ELK14023.1| Pre-mRNA branch site protein p14 [Pteropus alecto]
gi|432096839|gb|ELK27417.1| Pre-mRNA branch site protein p14 [Myotis davidii]
gi|440906084|gb|ELR56389.1| Pre-mRNA branch site protein p14 [Bos grunniens mutus]
gi|449272599|gb|EMC82439.1| Pre-mRNA branch site protein p14 [Columba livia]
Length = 125
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y + + +F + KKK+E+
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYNA--------NRAFQKMDTKKKEEQ 109
Score = 42.0 bits (97), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKIT 219
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNVC 83
>gi|345326438|ref|XP_003431044.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q
[Ornithorhynchus anatinus]
Length = 588
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGSIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQIVEEFSKVTEGLTDVILYHQ 278
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 337
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 338 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 372
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 102/235 (43%), Gaps = 53/235 (22%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFS 60
+G +P +Y+KNL ++I +ELK++ F +YG I V +K + R +V F
Sbjct: 232 SGAVPSFTNVYVKNLPKEITDDELKKT----FGKYGDISSAVVMKDQSGNSRSFGFVNFV 287
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
AA+ AV +M + + + A+ KSD RE++ +++ + ER R
Sbjct: 288 SPEAAAVAVEKMNGISLGEDVLYVGRAQKKSD-----------REEELRRKFEQERISRF 336
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
E+ Q S+ L+++NL L+ +F +Y
Sbjct: 337 EKLQGSN-------------------------------LYLKNLDDSVNDEKLKEMFSEY 365
Query: 181 PGFKEVRMIEAKPGIA----FVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+++ G++ FV + + ++ +AM+ + G K+ + P+ + A++
Sbjct: 366 GNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNG-KMIGRKPLYVALAQR 419
Score = 36.6 bits (83), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKL-RGQAWVVFSEVTAASNAV 69
+Y+KNL++ + E+LK +FS+YG + V + + L RG +V +S A A+
Sbjct: 344 LYLKNLDDSVNDEKLKE----MFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAM 399
Query: 70 RQMQNFPFYDKPMRIQYAKSKSD 92
++M KP+ + A+ K +
Sbjct: 400 KEMNGKMIGRKPLYVALAQRKEE 422
>gi|15239901|ref|NP_196780.1| pre-mRNA branch site protein p14 [Arabidopsis thaliana]
gi|297811341|ref|XP_002873554.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|32129916|sp|Q9FMP4.1|PM14_ARATH RecName: Full=Pre-mRNA branch site p14-like protein
gi|9759386|dbj|BAB10037.1| unnamed protein product [Arabidopsis thaliana]
gi|21617984|gb|AAM67034.1| unknown [Arabidopsis thaliana]
gi|27754399|gb|AAO22648.1| putative RRM-containing protein [Arabidopsis thaliana]
gi|28394033|gb|AAO42424.1| putative RRM-containing protein [Arabidopsis thaliana]
gi|297319391|gb|EFH49813.1| RNA recognition motif-containing protein [Arabidopsis lyrata subsp.
lyrata]
gi|332004389|gb|AED91772.1| pre-mRNA branch site protein p14 [Arabidopsis thaliana]
Length = 124
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 140 TAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAF 197
T S R +NT+ N +L+++NLP TS + +F +Y +++R+ +A G AF
Sbjct: 2 TTISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAF 61
Query: 198 VEFEDDVQSSMAMQALQGFKITPQNPMAITF 228
V +ED + A+ L GF + + + + +
Sbjct: 62 VVYEDIYDAKNAVDHLSGFNVANRYLIVLYY 92
Score = 42.4 bits (98), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL I EE+ Y +F +YG I + +G A+VV+ ++
Sbjct: 13 LPPEVNRVLYVRNLPFNITSEEM----YDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIY 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NAV + F ++ + + Y
Sbjct: 69 DAKNAVDHLSGFNVANRYLIVLY 91
>gi|157108640|ref|XP_001650324.1| hypothetical protein AaeL_AAEL005083 [Aedes aegypti]
gi|108879289|gb|EAT43514.1| AAEL005083-PA [Aedes aegypti]
Length = 435
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/104 (29%), Positives = 53/104 (50%), Gaps = 12/104 (11%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSL--YCLFSQYGRIFDVVALKTPKLRGQAWVVFS----- 60
P+ +Y+KNL + + +++LKR + + R D+ +++ +++GQA+V FS
Sbjct: 327 PSNKLYLKNLAKTVTEDDLKRIFHRFAITGHPDREIDIKLMQSGRMKGQAFVTFSYIYEE 386
Query: 61 -----EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDG 99
E + A+R DKPM + Y KS + V KEDG
Sbjct: 387 DLDLMEEKPIARALRLTNGLLLKDKPMVVAYGKSSAAKVEKEDG 430
>gi|346469585|gb|AEO34637.1| hypothetical protein [Amblyomma maculatum]
Length = 360
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 48/87 (55%), Gaps = 10/87 (11%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK----TPKLRGQAWVVFSEVTA 64
NQ +Y+KNL+ K+ EL +L+C F + D +K + KLRGQA+V F A
Sbjct: 280 NQVLYLKNLHHKVDIRELM-ALFCRFDE-----DTCTVKYRLLSGKLRGQAFVTFPSTQA 333
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKS 91
A+ A+ + KP+ I+Y ++++
Sbjct: 334 ATRALELCNGYVLRGKPIVIEYGRNET 360
>gi|116781833|gb|ABK22259.1| unknown [Picea sitchensis]
Length = 274
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 8/71 (11%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA---KPG-----IAFVEFEDDVQSS 207
+N LF++ LP + T +F+ + GFKEVR+++ +PG + FV+F D ++
Sbjct: 157 SNTLFVEGLPADCTRREAAHIFRPFIGFKEVRLVQKEPRRPGGDPLVLCFVDFTDARCAA 216
Query: 208 MAMQALQGFKI 218
A++ALQG+K
Sbjct: 217 TALEALQGYKF 227
>gi|222634881|gb|EEE65013.1| hypothetical protein OsJ_19964 [Oryza sativa Japonica Group]
Length = 265
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI--EAK-PG-----IAFVEFEDDVQSS 207
+N LFI+ +P + + +F+ + GF+EVR++ EA+ PG + FV+FE Q++
Sbjct: 162 SNTLFIEGIPTDCARREVSHIFRPFVGFREVRLVSKEARHPGGDPILLCFVDFETASQAA 221
Query: 208 MAMQALQGFKI 218
+AM ALQG+K
Sbjct: 222 IAMDALQGYKF 232
>gi|226489713|emb|CAX75007.1| Polypyrimidine tract-binding protein 1 [Schistosoma japonicum]
Length = 583
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/224 (23%), Positives = 94/224 (41%), Gaps = 32/224 (14%)
Query: 13 YIKNLN-EKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQ 71
++ NLN EK+ + +L+ LF YG + V L R A V F++ T A AV
Sbjct: 383 FVSNLNTEKVNPD----TLFILFGVYGDVLRVKILHNK--RSTALVQFTDSTQALRAVNF 436
Query: 72 MQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANG 131
+ Y K +R CV ++ SF+ Q + + +
Sbjct: 437 LNGVSLYGKIIR---------CVLSKN-SFINMPPTNLQNLTPDGENEIK---------- 476
Query: 132 TGAQSNGGTAASFRNANTQE---TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM 188
T G FR AN++ AP+ +L I NLP + L+ +F+ + + R+
Sbjct: 477 TTCDYTGHKLHRFRRANSRNHFNICAPSKVLHITNLPESISDDTLKSVFENHTDCQVCRV 536
Query: 189 --IEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
+A+ +A +EF + + A+ A+ + I + ++F+K
Sbjct: 537 KSFKAEKKMALMEFANLDDAISALIAMHNYPIEENMHIRVSFSK 580
>gi|221059061|ref|XP_002260176.1| U2 snRNP auxiliary factor [Plasmodium knowlesi strain H]
gi|193810249|emb|CAQ41443.1| U2 snRNP auxiliary factor, putative [Plasmodium knowlesi strain H]
Length = 865
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 47/92 (51%), Gaps = 9/92 (9%)
Query: 147 ANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP-----GIAFVEFE 201
A + T +N L+IQNLPH+ + L QQ+ K +I+ + G F E+E
Sbjct: 618 APVRSTGDDDNKLYIQNLPHDLGDVQIRDLLQQFGKLKGFNVIKDQSTGLNKGYGFFEYE 677
Query: 202 DDVQSSMAMQALQGFKITPQNPMAI---TFAK 230
D + +AM AL GF + QN +++ TF K
Sbjct: 678 DSNCTPIAMHALNGF-VCGQNILSVKKATFGK 708
>gi|351713076|gb|EHB15995.1| Pre-mRNA branch site protein p14 [Heterocephalus glaber]
Length = 123
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 11 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 66
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y + + +F + KKK+E+
Sbjct: 67 DAKNACDHLSGFNVCNRYLVVLYYNA--------NRAFQKMDTKKKEEQ 107
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 5 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 64
Query: 203 DVQSSMAMQALQGFKIT 219
+ A L GF +
Sbjct: 65 IFDAKNACDHLSGFNVC 81
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 102/235 (43%), Gaps = 53/235 (22%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFS 60
+G +P +Y+KNL ++I +ELK++ F +YG I V +K + R +V F
Sbjct: 218 SGAVPSFTNVYVKNLPKEITDDELKKT----FGKYGDISSAVVMKDQSGNSRSFGFVNFV 273
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
AA+ AV +M + + + A+ KSD RE++ +++ + ER R
Sbjct: 274 SPEAAAVAVEKMNGISLGEDVLYVGRAQKKSD-----------REEELRRKFEQERISRF 322
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
E+ Q S+ L+++NL L+ +F +Y
Sbjct: 323 EKLQGSN-------------------------------LYLKNLDDSVNDEKLKEMFSEY 351
Query: 181 PGFKEVRMIEAKPGIA----FVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+++ G++ FV + + ++ +AM+ + G K+ + P+ + A++
Sbjct: 352 GNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNG-KMIGRKPLYVALAQR 405
Score = 36.2 bits (82), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKL-RGQAWVVFSEVTAASNA 68
+Y+KNL++ + E+LK +FS+YG + V + + L RG +V +S A A
Sbjct: 329 NLYLKNLDDSVNDEKLKE----MFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLA 384
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSD 92
+++M KP+ + A+ K +
Sbjct: 385 MKEMNGKMIGRKPLYVALAQRKEE 408
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 102/235 (43%), Gaps = 53/235 (22%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFS 60
+G +P +Y+KNL ++I +ELK++ F +YG I V +K + R +V F
Sbjct: 218 SGAVPSFTNVYVKNLPKEITDDELKKT----FGKYGDISSAVVMKDQSGNSRSFGFVNFV 273
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
AA+ AV +M + + + A+ KSD RE++ +++ + ER R
Sbjct: 274 SPEAAAVAVEKMNGISLGEDVLYVGRAQKKSD-----------REEELRRKFEQERISRF 322
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
E+ Q S+ L+++NL L+ +F +Y
Sbjct: 323 EKLQGSN-------------------------------LYLKNLDDSVNDEKLKEMFSEY 351
Query: 181 PGFKEVRMIEAKPGIA----FVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+++ G++ FV + + ++ +AM+ + G K+ + P+ + A++
Sbjct: 352 GNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNG-KMIGRKPLYVALAQR 405
Score = 36.2 bits (82), Expect = 9.5, Method: Compositional matrix adjust.
Identities = 24/84 (28%), Positives = 44/84 (52%), Gaps = 6/84 (7%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKL-RGQAWVVFSEVTAASNA 68
+Y+KNL++ + E+LK +FS+YG + V + + L RG +V +S A A
Sbjct: 329 NLYLKNLDDSVNDEKLKE----MFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLA 384
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSD 92
+++M KP+ + A+ K +
Sbjct: 385 MKEMNGKMIGRKPLYVALAQRKEE 408
>gi|170045128|ref|XP_001850172.1| pre-mRNA branch site protein p14 [Culex quinquefasciatus]
gi|167868145|gb|EDS31528.1| pre-mRNA branch site protein p14 [Culex quinquefasciatus]
Length = 126
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI +E+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRVLYVRNLPYKITSDEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
A NA + F ++ + + Y +S
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYQS 94
Score = 43.9 bits (102), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--KPGIAFVEFEDDVQSSMAMQAL 213
N +L+++NLP++ TS + +F +Y +++R+ G AFV +ED + A L
Sbjct: 18 NRVLYVRNLPYKITSDEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 77
Query: 214 QGFKITPQNPMAITF 228
GF + + + + +
Sbjct: 78 SGFNVCNRYLVVLYY 92
>gi|302785932|ref|XP_002974737.1| hypothetical protein SELMODRAFT_59352 [Selaginella moellendorffii]
gi|300157632|gb|EFJ24257.1| hypothetical protein SELMODRAFT_59352 [Selaginella moellendorffii]
Length = 92
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--------KPGIAFVEFEDDVQSS 207
++ LF+ LP + T +F+ + GFKEVR++ K + FVEF D ++
Sbjct: 6 SSTLFVDGLPSDCTRREAAHIFRPFIGFKEVRLVHKDAKRATGEKLVLCFVEFMDAKCAA 65
Query: 208 MAMQALQGFKITPQNP----MAITFAK 230
A++ALQG+K +P + +TFA+
Sbjct: 66 TALEALQGYKFDENDPDSYVLRLTFAR 92
>gi|126343769|ref|XP_001364306.1| PREDICTED: pre-mRNA branch site protein p14-like [Monodelphis
domestica]
Length = 125
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNF 75
A NA + F
Sbjct: 69 DAKNACDHLSGF 80
Score = 43.1 bits (100), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 2/81 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKITPQNP 223
+ A L GF + + P
Sbjct: 67 IFDAKNACDHLSGFNVCNRYP 87
>gi|403418853|emb|CCM05553.1| predicted protein [Fibroporia radiculosa]
Length = 123
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +++KNLN +I ++L Y LF +YG I + K RG A+VVF +V
Sbjct: 10 LPPGANRILFVKNLNYQITGDDL----YDLFGRYGSIRQIRIGNEQKSRGTAFVVFDDVM 65
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NA+ + F ++ + + Y
Sbjct: 66 DAKNALDHLNGFHLQERYIVVLY 88
Score = 43.1 bits (100), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 37/65 (56%), Gaps = 2/65 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDVQSSMAMQAL 213
N ILF++NL ++ T L LF +Y +++R+ + G AFV F+D + + A+ L
Sbjct: 15 NRILFVKNLNYQITGDDLYDLFGRYGSIRQIRIGNEQKSRGTAFVVFDDVMDAKNALDHL 74
Query: 214 QGFKI 218
GF +
Sbjct: 75 NGFHL 79
>gi|260790454|ref|XP_002590257.1| hypothetical protein BRAFLDRAFT_273506 [Branchiostoma floridae]
gi|229275448|gb|EEN46268.1| hypothetical protein BRAFLDRAFT_273506 [Branchiostoma floridae]
Length = 129
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 61/114 (53%), Gaps = 14/114 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI EE+ Y +F +YG I + TP+ +G A+VV+ ++
Sbjct: 13 LPPEVNRILYVRNLPYKITAEEM----YDIFGKYGAIRQIRMGNTPETKGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERK 117
A NA + F ++ + + Y + + +F ++KKK+EE ++ K
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYQP--------NRAFKKVDQKKKEEELSKLK 114
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
R AN + N IL+++NLP++ T+ + +F +Y +++RM G A+V +ED
Sbjct: 7 RKANVRLPPEVNRILYVRNLPYKITAEEMYDIFGKYGAIRQIRMGNTPETKGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 67 IFDAKNACDHLSGFNVCNRYLVVLYY 92
>gi|326916229|ref|XP_003204412.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 3
[Meleagris gallopavo]
Length = 527
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQIVEEFSKVTEGLTDVILYHQ 278
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 337
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 338 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 372
>gi|405953553|gb|EKC21194.1| Squamous cell carcinoma antigen recognized by T-cells 3
[Crassostrea gigas]
Length = 970
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 4/71 (5%)
Query: 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIE----AKPGIAFVEFEDDVQSS 207
TA N LFI+NLP + L +F ++ KEVRM+ A G+A+VEFED+ ++
Sbjct: 860 TAMEKNKLFIKNLPFTCSKDALIQIFSEHGPVKEVRMVTYRSGAPKGLAYVEFEDEQDAA 919
Query: 208 MAMQALQGFKI 218
A+ G KI
Sbjct: 920 KAVMKTDGLKI 930
>gi|302760451|ref|XP_002963648.1| hypothetical protein SELMODRAFT_69289 [Selaginella moellendorffii]
gi|300168916|gb|EFJ35519.1| hypothetical protein SELMODRAFT_69289 [Selaginella moellendorffii]
Length = 92
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--------KPGIAFVEFEDDVQSS 207
++ LF+ LP + T +F+ + GFKEVR++ K + FVEF D ++
Sbjct: 6 SSTLFVDGLPSDCTRREAAHIFRPFIGFKEVRLVHKDAKRTTGEKLVLCFVEFMDAKCAA 65
Query: 208 MAMQALQGFKITPQNP----MAITFAK 230
A++ALQG+K +P + +TFA+
Sbjct: 66 TALEALQGYKFDENDPDSYVLRLTFAR 92
>gi|432945669|ref|XP_004083713.1| PREDICTED: pre-mRNA branch site protein p14-like [Oryzias latipes]
gi|209730926|gb|ACI66332.1| Pre-mRNA branch site protein p14 [Salmo salar]
gi|209734174|gb|ACI67956.1| Pre-mRNA branch site protein p14 [Salmo salar]
gi|209734452|gb|ACI68095.1| Pre-mRNA branch site protein p14 [Salmo salar]
gi|209737436|gb|ACI69587.1| Pre-mRNA branch site protein p14 [Salmo salar]
gi|209737848|gb|ACI69793.1| Pre-mRNA branch site protein p14 [Salmo salar]
gi|225717036|gb|ACO14364.1| Pre-mRNA branch site protein p14 [Esox lucius]
gi|303658613|gb|ADM15925.1| Pre-mRNA branch site protein p14 [Salmo salar]
gi|303660457|gb|ADM15996.1| Pre-mRNA branch site protein p14 [Salmo salar]
Length = 125
Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRTGNTPESRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y + + +F + KKK+E+
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYNA--------NRAFQKMDTKKKEEQ 109
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRTGNTPESRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKIT 219
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNVC 83
>gi|255567158|ref|XP_002524560.1| RNA binding protein, putative [Ricinus communis]
gi|223536113|gb|EEF37768.1| RNA binding protein, putative [Ricinus communis]
Length = 929
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/231 (23%), Positives = 103/231 (44%), Gaps = 31/231 (13%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PP++ +++ NL+ I + +L F ++G + D VA + R A++ F A
Sbjct: 49 PPSRHLWVGNLSHSIMENDLTDH----FVRFGEL-DSVAFQ--PGRSYAFINFKNDDEAI 101
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEK----AERKRRAEE 122
A++ +Q FP P+RI++AK+ V D ++ R +++ K ++R R
Sbjct: 102 AALKALQGFPLAGNPLRIEFAKADKSSVPSRDEDYLQRRDEQRSAMKGSPFSQRDSRLRA 161
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQ-YP 181
A S+ ++A P+ +L+I P + EM+ ++ +
Sbjct: 162 ASPEPFYADKSKVSD-------------KSAEPSEVLWI-GFP--ALLKVDEMILRKAFS 205
Query: 182 GFKEVRMIEAKPG--IAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
F ++ I PG AFV F + + + A + LQG K+ + I FA+
Sbjct: 206 PFGDIEKITVFPGRSYAFVRFRNVMSACRAKETLQG-KLFGNPRVHICFAR 255
>gi|217071004|gb|ACJ83862.1| unknown [Medicago truncatula]
gi|388522783|gb|AFK49453.1| unknown [Medicago truncatula]
Length = 124
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 140 TAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAF 197
T S R NT+ N +L+++NLP TS + +F +Y +++R+ K G AF
Sbjct: 2 TTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAF 61
Query: 198 VEFEDDVQSSMAMQALQGFKITPQNPMAITF 228
V +ED + A+ L GF + + + + +
Sbjct: 62 VVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92
Score = 43.5 bits (101), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL I EE+ Y +F +YG I + RG A+VV+ ++
Sbjct: 13 LPPEVNRVLYVRNLPFNITSEEM----YDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIY 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKA 114
A AV + F ++ + + Y + AK F ++KKK++E A
Sbjct: 69 DAKTAVDHLSGFNVANRYLIVLYYQQ-----AKMSKKF---DQKKKEDEIA 111
>gi|348506404|ref|XP_003440749.1| PREDICTED: pre-mRNA branch site protein p14-like [Oreochromis
niloticus]
gi|410916077|ref|XP_003971513.1| PREDICTED: pre-mRNA branch site protein p14-like [Takifugu
rubripes]
gi|47222698|emb|CAG00132.1| unnamed protein product [Tetraodon nigroviridis]
gi|328677147|gb|AEB31296.1| hypothetical protein [Epinephelus bruneus]
Length = 125
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYVRNLPYKITAEEM----YDIFGKYGPIRQIRTGNTPETRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y + + +F + KKK+E+
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYNA--------NRAFQKMDTKKKEEQ 109
Score = 40.8 bits (94), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+++NLP++ T+ + +F +Y +++R G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYVRNLPYKITAEEMYDIFGKYGPIRQIRTGNTPETRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKIT 219
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNVC 83
>gi|147775314|emb|CAN72509.1| hypothetical protein VITISV_040729 [Vitis vinifera]
Length = 932
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP-KLRGQAWVVFSEVTAAS 66
P++T++++N+N ++ EL+ LF QYG D+ AL T K RG + + ++ AA
Sbjct: 222 PSRTLFVRNINSNVEDSELR----ILFEQYG---DIRALYTACKHRGFVMISYYDIRAAR 274
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSD 92
NA+R +QN P + + I Y+ K +
Sbjct: 275 NAMRALQNKPLRRRKLDIHYSIPKDN 300
>gi|357465775|ref|XP_003603172.1| RNA-binding protein with multiple splicing [Medicago truncatula]
gi|355492220|gb|AES73423.1| RNA-binding protein with multiple splicing [Medicago truncatula]
Length = 229
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 48/88 (54%), Gaps = 8/88 (9%)
Query: 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG--------IAFVEFEDD 203
+AA +NILF+ LP + T + LF+ + G+K+++++ +P FVEF +
Sbjct: 128 SAAESNILFVGGLPKDCTRREVGHLFRPFIGYKDIKVVHKEPRRSGDKAMIFCFVEFTEP 187
Query: 204 VQSSMAMQALQGFKITPQNPMAITFAKK 231
+ AM+ALQG+K + P + T K
Sbjct: 188 KCALTAMEALQGYKFDDKKPDSPTLKIK 215
>gi|281344992|gb|EFB20576.1| hypothetical protein PANDA_001706 [Ailuropoda melanoleuca]
gi|444516298|gb|ELV11100.1| Pre-mRNA branch site protein p14, partial [Tupaia chinensis]
Length = 115
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 56/109 (51%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 3 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 58
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y + +F + KKK+E+
Sbjct: 59 DAKNACDHLSGFNVCNRYLVVLYYNANR--------AFQKMDTKKKEEQ 99
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED + A L
Sbjct: 8 NRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNACDHL 67
Query: 214 QGFKIT 219
GF +
Sbjct: 68 SGFNVC 73
>gi|225707236|gb|ACO09464.1| Pre-mRNA branch site protein p14 [Osmerus mordax]
Length = 125
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPESRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y + + +F + KKK+E+
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYNA--------NRAFQKMDTKKKEEQ 109
Score = 42.0 bits (97), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPESRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKIT 219
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNVC 83
>gi|397310734|gb|AFO38380.1| putative Mei2 protein, partial [Glycine max]
Length = 860
Score = 51.6 bits (122), Expect = 3e-04, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 50/92 (54%), Gaps = 6/92 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P++T++++N+N + ELK LF QYG I + K RG + + ++ AA N
Sbjct: 227 PSRTLFVRNINSNVDDSELK----ALFEQYGDIRTIYT--ASKHRGFVMISYQDLRAAQN 280
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDG 99
A++++QN P + + I Y+ K + K+ G
Sbjct: 281 AMQELQNRPLRSRKLDIHYSIPKVNAPEKDIG 312
>gi|222640974|gb|EEE69106.1| hypothetical protein OsJ_28175 [Oryza sativa Japonica Group]
Length = 268
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK---PG-----IAFVEFEDDVQSS 207
++ L+++ LP T + +F+ + GF+EVR++ + PG + FV+F++ Q++
Sbjct: 168 SSTLYVEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDNPAQAT 227
Query: 208 MAMQALQGFKI 218
+A++ALQG+K
Sbjct: 228 LALEALQGYKF 238
>gi|338710585|ref|XP_003362388.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 527
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQILEEFSKVTEGLTDVILYHQ 278
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 337
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 338 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 372
>gi|357493883|ref|XP_003617230.1| Pre-mRNA branch site p14-like protein [Medicago truncatula]
gi|355518565|gb|AET00189.1| Pre-mRNA branch site p14-like protein [Medicago truncatula]
Length = 126
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 46/91 (50%), Gaps = 2/91 (2%)
Query: 140 TAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAF 197
T S R NT+ N +L+++NLP TS + +F +Y +++R+ K G AF
Sbjct: 2 TTISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAF 61
Query: 198 VEFEDDVQSSMAMQALQGFKITPQNPMAITF 228
V +ED + A+ L GF + + + + +
Sbjct: 62 VVYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92
Score = 43.9 bits (102), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL I EE+ Y +F +YG I + RG A+VV+ ++
Sbjct: 13 LPPEVNRVLYVRNLPFNITSEEM----YDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIY 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKA 114
A AV + F ++ + + Y + AK F ++KKK++E A
Sbjct: 69 DAKTAVDHLSGFNVANRYLIVLYYQQ-----AKMSKKF---DQKKKEDEIA 111
>gi|321478268|gb|EFX89225.1| hypothetical protein DAPPUDRAFT_230136 [Daphnia pulex]
Length = 122
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYVRNLPYKITSEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NA + F ++ + + Y
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLY 91
Score = 43.5 bits (101), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 21/75 (28%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N IL+++NLP++ TS + +F +Y +++R+ G AFV +ED + A L
Sbjct: 18 NRILYVRNLPYKITSEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 77
Query: 214 QGFKITPQNPMAITF 228
GF + + + + +
Sbjct: 78 SGFNVCNRYLVVLYY 92
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 98/231 (42%), Gaps = 53/231 (22%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTA 64
P +Y+KNL+E E+LK+ FS YG I + +K + K +G +V F +
Sbjct: 199 PKFTNVYVKNLSETTSDEDLKK----FFSNYGSITSAIVMKDQSGKSKGFGFVNFQSPDS 254
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+ AV ++ F DK + A ++K E +AE K R E+
Sbjct: 255 AAAAVEKLNGTTFNDKVWYVGRA-------------------QRKGEREAELKARFEQE- 294
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
RN+ ++ A N L+++NL + L+ LF ++
Sbjct: 295 --------------------RNSRYEKLKAAN--LYLKNLDDKIDDEKLKELFSEFGSIT 332
Query: 185 EVRMIEAKPGIA----FVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+++ + G++ FV F ++S A+ + G K+ + P+ + A++
Sbjct: 333 SCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNG-KMIGKKPLYVAVAQR 382
Score = 40.8 bits (94), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKL-RGQAWVVFSEVTAASNAV 69
+Y+KNL++KI E+LK LFS++G I V L L +G +V FS AS A+
Sbjct: 307 LYLKNLDDKIDDEKLKE----LFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRAL 362
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
M KP+ + A+ + + A+ F
Sbjct: 363 NGMNGKMIGKKPLYVAVAQRREERKARLQAHF 394
>gi|389585165|dbj|GAB67896.1| U2 snRNP auxiliary factor [Plasmodium cynomolgi strain B]
Length = 894
Score = 51.6 bits (122), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 147 ANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFE 201
A + T +N L+IQNLPH+ + L QQ+ K +I+ G F E+E
Sbjct: 647 APVRSTGDDDNKLYIQNLPHDLRDDQIRDLLQQFGKLKGFNVIKDLNTGLNKGYGFFEYE 706
Query: 202 DDVQSSMAMQALQGFKITPQNPMAI---TFAK 230
D + +AM AL GF + QN + + TF K
Sbjct: 707 DSNCTPIAMHALNGF-VCGQNILNVKKATFGK 737
>gi|395857932|ref|XP_003801334.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Otolemur garnettii]
Length = 527
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQILEEFSKVTEGLTDVILYHQ 278
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 337
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 338 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 372
>gi|255540053|ref|XP_002511091.1| RNA-binding protein, putative [Ricinus communis]
gi|223550206|gb|EEF51693.1| RNA-binding protein, putative [Ricinus communis]
Length = 972
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP-KLRGQAWVVFSEVTAAS 66
P++T++++N+N ++ ELK LF QYG D+ L T K RG + + ++ AA
Sbjct: 271 PSRTLFVRNINSNVEDSELK----ALFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 323
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKE 97
NA+R +QN P + + I Y+ K + K+
Sbjct: 324 NAMRSLQNKPLRRRKLDIHYSIPKDNPSEKD 354
>gi|116788096|gb|ABK24755.1| unknown [Picea sitchensis]
Length = 506
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 55/239 (23%), Positives = 101/239 (42%), Gaps = 38/239 (15%)
Query: 7 PPNQT-IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65
PP+ T +++ NL I KE+L L Q+G +FDV+ + A+V F+ +A
Sbjct: 125 PPHGTEVFVGNLPRNITKEDLT----SLCEQHGEVFDVIIKREASKLEYAFVTFTTKESA 180
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC----------------VAKEDGSFVPREKKKK 109
A+ + F F DK +R+ ++ K+ + E G + K
Sbjct: 181 KKAIETLNGFEFKDKKLRVSESQPKNRLFLGNIPSNLKEEELTKIVSEQGPGYQHLELIK 240
Query: 110 QEEKAERKR-------RAEEAQQSSMANGTGAQSN-GGTAASFRNANTQETAAPN-NILF 160
+ R R + + +M N T ++ + + A +Q +++ ++
Sbjct: 241 DPKDTTRNRGFAFVEYYNKGCAEKAMKNMTHSKFQLDDKLITVKWATSQRSSSEEVKSVY 300
Query: 161 IQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG-----IAFVEFEDDVQSSMAMQALQ 214
++NLP T L LF ++ +V ++E KPG FV + D S AM+A++
Sbjct: 301 VRNLPENVTEEQLRELFGRHGEVTKVVLLEQKPGQPKRDFGFVHYAD---HSSAMKAIE 356
Score = 40.0 bits (92), Expect = 0.72, Method: Compositional matrix adjust.
Identities = 22/87 (25%), Positives = 49/87 (56%), Gaps = 9/87 (10%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK----TPKLRGQAWVVFSEVTAA 65
+++Y++NL E + +E+L+ LF ++G + VV L+ PK R +V +++ ++A
Sbjct: 297 KSVYVRNLPENVTEEQLRE----LFGRHGEVTKVVLLEQKPGQPK-RDFGFVHYADHSSA 351
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSD 92
A+ + + + D+ + + A+ SD
Sbjct: 352 MKAIEKTEKYTLEDRELSVSLARPLSD 378
>gi|242081967|ref|XP_002445752.1| hypothetical protein SORBIDRAFT_07g025090 [Sorghum bicolor]
gi|241942102|gb|EES15247.1| hypothetical protein SORBIDRAFT_07g025090 [Sorghum bicolor]
Length = 203
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 43/68 (63%), Gaps = 8/68 (11%)
Query: 159 LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK---PG-----IAFVEFEDDVQSSMAM 210
L+I+ LP T + +F+ + GF+EVR++ + PG + FV+F++ Q+++A+
Sbjct: 106 LYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDNPAQATIAL 165
Query: 211 QALQGFKI 218
+ALQG+K
Sbjct: 166 EALQGYKF 173
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/231 (22%), Positives = 98/231 (42%), Gaps = 53/231 (22%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTA 64
P +Y+KNL+E E+LK+ FS YG I + +K + K +G +V F +
Sbjct: 209 PKFTNVYVKNLSETTSDEDLKK----FFSNYGAITSAIVMKDQSGKSKGFGFVNFQSPDS 264
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+ AV ++ F DK + A ++K E +AE K R E+
Sbjct: 265 AAAAVEKLNGTTFNDKVWYVGRA-------------------QRKGEREAELKARFEQE- 304
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
RN+ ++ A N L+++NL + L+ LF ++
Sbjct: 305 --------------------RNSRYEKLKAAN--LYLKNLDDKIDDEKLKELFSEFGSIT 342
Query: 185 EVRMIEAKPGIA----FVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+++ + G++ FV F ++S A+ + G K+ + P+ + A++
Sbjct: 343 SCKVMLDQQGLSKGSGFVAFSTPEEASRALNGMNG-KMIGKKPLYVAVAQR 392
Score = 41.2 bits (95), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 30/92 (32%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKL-RGQAWVVFSEVTAASNAV 69
+Y+KNL++KI E+LK LFS++G I V L L +G +V FS AS A+
Sbjct: 317 LYLKNLDDKIDDEKLKE----LFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRAL 372
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
M KP+ + A+ + + A+ F
Sbjct: 373 NGMNGKMIGKKPLYVAVAQRREERKARLQAHF 404
>gi|426353903|ref|XP_004044414.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Gorilla
gorilla gorilla]
Length = 527
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQILEEFSKVTEGLTDVILYHQ 278
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 337
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 338 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 372
>gi|356501392|ref|XP_003519509.1| PREDICTED: pre-mRNA branch site p14-like protein-like [Glycine max]
Length = 124
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/90 (28%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 141 AASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFV 198
A S R NT+ N +L+++NLP TS + +F +Y +++R+ K G AFV
Sbjct: 3 AISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFV 62
Query: 199 EFEDDVQSSMAMQALQGFKITPQNPMAITF 228
+ED + A+ L GF + + + + +
Sbjct: 63 VYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92
Score = 43.5 bits (101), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 32/111 (28%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL I EE+ Y +F +YG I + RG A+VV+ ++
Sbjct: 13 LPPEVNRVLYVRNLPFNITSEEM----YDIFGKYGAIRQIRIGTNKDTRGTAFVVYEDIY 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKA 114
A AV + F ++ + + Y + AK F ++KKK++E A
Sbjct: 69 DAKTAVDHLSGFNVANRYLIVLYYQQ-----AKMSKKF---DQKKKEDEIA 111
>gi|296085525|emb|CBI29257.3| unnamed protein product [Vitis vinifera]
Length = 986
Score = 51.2 bits (121), Expect = 3e-04, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP-KLRGQAWVVFSEVTAAS 66
P++T++++N+N ++ EL+ LF QYG D+ AL T K RG + + ++ AA
Sbjct: 269 PSRTLFVRNINSNVEDSELR----ILFEQYG---DIRALYTACKHRGFVMISYYDIRAAR 321
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSD 92
NA+R +QN P + + I Y+ K +
Sbjct: 322 NAMRALQNKPLRRRKLDIHYSIPKDN 347
>gi|238231623|ref|NP_001153997.1| Pre-mRNA branch site protein p14 [Oncorhynchus mykiss]
gi|225703286|gb|ACO07489.1| Pre-mRNA branch site protein p14 [Oncorhynchus mykiss]
Length = 125
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRTGNTPESRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NA + F ++ + + Y
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLY 91
Score = 41.6 bits (96), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRTGNTPESRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKIT 219
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNVC 83
>gi|338710583|ref|XP_003362387.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Equus
caballus]
Length = 588
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQILEEFSKVTEGLTDVILYHQ 278
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 337
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 338 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 372
>gi|228008398|ref|NP_001153146.1| heterogeneous nuclear ribonucleoprotein Q isoform 3 [Homo sapiens]
gi|291396566|ref|XP_002714607.1| PREDICTED: synaptotagmin binding, cytoplasmic RNA interacting
protein isoform 3 [Oryctolagus cuniculus]
gi|296198706|ref|XP_002746829.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Callithrix jacchus]
gi|301775583|ref|XP_002923212.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 2
[Ailuropoda melanoleuca]
gi|332218417|ref|XP_003258352.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|348578334|ref|XP_003474938.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 5
[Cavia porcellus]
gi|397504634|ref|XP_003822889.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2 [Pan
paniscus]
gi|402867570|ref|XP_003897916.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Papio anubis]
gi|426234736|ref|XP_004011348.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 5
[Ovis aries]
gi|21619168|gb|AAH32643.1| SYNCRIP protein [Homo sapiens]
gi|119569013|gb|EAW48628.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_f [Homo sapiens]
gi|296484070|tpg|DAA26185.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 2 [Bos taurus]
gi|325464513|gb|ADZ16027.1| synaptotagmin binding, cytoplasmic RNA interacting protein
[synthetic construct]
Length = 527
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQILEEFSKVTEGLTDVILYHQ 278
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 337
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 338 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 372
>gi|344264677|ref|XP_003404418.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Loxodonta africana]
Length = 524
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 165 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 223
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 224 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQILEEFSKVTEGLTDVILYHQ 275
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 276 PDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 334
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 335 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 369
>gi|325181594|emb|CCA16044.1| conserved hypothetical protein [Albugo laibachii Nc14]
gi|325191994|emb|CCA26461.1| conserved hypothetical protein [Albugo laibachii Nc14]
Length = 236
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 4 GDIP-PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP---KLRGQAWVVF 59
GDI P +Y+ NL ++ EEL++ LF ++GR+ + P + RG A+V F
Sbjct: 67 GDIANPGNNLYVANLAHRVTDEELRQ----LFEKFGRLEKCEIIIDPISRESRGFAFVTF 122
Query: 60 SEVTAASNAVRQMQNFPFYDKPMRIQYAKSK 90
+V AS+AV+++ + MR+++AK K
Sbjct: 123 EDVRDASDAVQELNGKDIQGRRMRVEHAKRK 153
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 8/87 (9%)
Query: 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI------EAKPGIAFVEFEDDV 204
+ A P N L++ NL H T L LF+++ ++ +I E++ G AFV FED
Sbjct: 68 DIANPGNNLYVANLAHRVTDEELRQLFEKFGRLEKCEIIIDPISRESR-GFAFVTFEDVR 126
Query: 205 QSSMAMQALQGFKITPQNPMAITFAKK 231
+S A+Q L G I + M + AK+
Sbjct: 127 DASDAVQELNGKDIQGRR-MRVEHAKR 152
>gi|395857936|ref|XP_003801336.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 4
[Otolemur garnettii]
Length = 588
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQILEEFSKVTEGLTDVILYHQ 278
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 337
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 338 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 372
>gi|393904920|gb|EFO17802.2| hypothetical protein LOAG_10698 [Loa loa]
Length = 133
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 36/65 (55%)
Query: 159 LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
+F+ LP++ +S LE F +Y K+V + PG AFVEFED + A++ L G +I
Sbjct: 12 VFVGGLPNDASSEELEEAFSKYGRIKKVWLARRPPGFAFVEFEDSRDAEDAVKGLDGTRI 71
Query: 219 TPQNP 223
P
Sbjct: 72 CGVRP 76
>gi|15809588|gb|AAK59704.1| hnRNP Q2 [Homo sapiens]
Length = 588
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 92/218 (42%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQILEEFSKVTEGLTDVILYHQ 278
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
+ F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 279 PDDKKKNRSFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 337
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 338 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 372
>gi|195443583|ref|XP_002069483.1| GK22267 [Drosophila willistoni]
gi|194165568|gb|EDW80469.1| GK22267 [Drosophila willistoni]
Length = 69
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/33 (69%), Positives = 25/33 (75%)
Query: 72 MQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPR 104
MQ FPFYDKPMRI Y+KS SD VAK G+F R
Sbjct: 1 MQGFPFYDKPMRIAYSKSDSDIVAKLKGTFKER 33
>gi|156099808|ref|XP_001615700.1| U2 snRNP auxiliary factor [Plasmodium vivax Sal-1]
gi|148804574|gb|EDL45973.1| U2 snRNP auxiliary factor, putative [Plasmodium vivax]
Length = 914
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 31/92 (33%), Positives = 45/92 (48%), Gaps = 9/92 (9%)
Query: 147 ANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFE 201
A + T +N L+IQNLPH+ + L QQ+ K +I+ G F E+E
Sbjct: 667 APVRSTGDDDNKLYIQNLPHDLRDDQIRDLLQQFGKLKGFNIIKDLNTGLNKGYGFFEYE 726
Query: 202 DDVQSSMAMQALQGFKITPQNPMAI---TFAK 230
D + +AM AL GF + QN + + TF K
Sbjct: 727 DSNCTPIAMHALNGF-VCGQNILNVKKATFGK 757
>gi|119569012|gb|EAW48627.1| synaptotagmin binding, cytoplasmic RNA interacting protein, isoform
CRA_e [Homo sapiens]
Length = 588
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQILEEFSKVTEGLTDVILYHQ 278
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQARLLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 337
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 338 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 372
>gi|228008295|ref|NP_001153147.1| heterogeneous nuclear ribonucleoprotein Q isoform 4 [Homo sapiens]
gi|297678606|ref|XP_002817155.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 1
[Pongo abelii]
gi|301775587|ref|XP_002923214.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Ailuropoda melanoleuca]
gi|332218421|ref|XP_003258354.1| PREDICTED: uncharacterized protein LOC100579672 [Nomascus
leucogenys]
gi|332824482|ref|XP_518621.3| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Pan
troglodytes]
gi|348578332|ref|XP_003474937.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q-like isoform 4
[Cavia porcellus]
gi|426234738|ref|XP_004011349.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 6
[Ovis aries]
gi|296484069|tpg|DAA26184.1| TPA: synaptotagmin binding, cytoplasmic RNA interacting protein
isoform 1 [Bos taurus]
Length = 588
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQILEEFSKVTEGLTDVILYHQ 278
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 337
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 338 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 372
>gi|293331463|ref|NP_001168957.1| uncharacterized protein LOC100382777 [Zea mays]
gi|223974013|gb|ACN31194.1| unknown [Zea mays]
Length = 287
Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK---PG-----IAFVEFEDDVQSS 207
++ L+I+ LP T + +F+ + GF+EVR++ + PG + FV+F++ Q++
Sbjct: 187 SSTLYIEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDNPAQAT 246
Query: 208 MAMQALQGFKI 218
+A++ALQG+K
Sbjct: 247 IALEALQGYKF 257
>gi|391339586|ref|XP_003744129.1| PREDICTED: RNA-binding protein 40-like [Metaseiulus occidentalis]
Length = 361
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQY-------GRIFDVVALKTPKLRGQAWVVFSEVTA 64
+Y+KNL++ +EEL + +F Q+ IFD+ +K+ ++RGQA+V + V A
Sbjct: 276 LYLKNLHKSTTEEEL----FSVFGQFVPDNDAERAIFDIKLMKSGRMRGQAFVTYGSVPA 331
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKS 89
A A+ KPM +Q+AK+
Sbjct: 332 AERALELTNRVILNGKPMSVQFAKA 356
>gi|359473863|ref|XP_002267714.2| PREDICTED: protein MEI2-like 4-like [Vitis vinifera]
Length = 965
Score = 51.2 bits (121), Expect = 4e-04, Method: Composition-based stats.
Identities = 29/86 (33%), Positives = 50/86 (58%), Gaps = 8/86 (9%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP-KLRGQAWVVFSEVTAAS 66
P++T++++N+N ++ EL+ LF QYG D+ AL T K RG + + ++ AA
Sbjct: 248 PSRTLFVRNINSNVEDSELR----ILFEQYG---DIRALYTACKHRGFVMISYYDIRAAR 300
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSD 92
NA+R +QN P + + I Y+ K +
Sbjct: 301 NAMRALQNKPLRRRKLDIHYSIPKDN 326
>gi|218201560|gb|EEC83987.1| hypothetical protein OsI_30140 [Oryza sativa Indica Group]
Length = 218
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 45/71 (63%), Gaps = 8/71 (11%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK---PG-----IAFVEFEDDVQSS 207
++ L+++ LP T + +F+ + GF+EVR++ + PG + FV+F++ Q++
Sbjct: 118 SSTLYVEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPHVLCFVDFDNPAQAT 177
Query: 208 MAMQALQGFKI 218
+A++ALQG+K
Sbjct: 178 LALEALQGYKF 188
>gi|170090764|ref|XP_001876604.1| predicted protein [Laccaria bicolor S238N-H82]
gi|164648097|gb|EDR12340.1| predicted protein [Laccaria bicolor S238N-H82]
Length = 122
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 3 TGDIPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
T +PP N+ +++KNLN +I E+L Y LF +YG I + K +G A+VV+
Sbjct: 7 TTKLPPGANRILFVKNLNYQITGEDL----YDLFGRYGSIRQIRIGNEAKTKGTAFVVYD 62
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQY 86
+V A NA+ + F ++ + + Y
Sbjct: 63 DVMDAKNALDHLNGFHLQERYIVVLY 88
Score = 43.5 bits (101), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 41/72 (56%), Gaps = 2/72 (2%)
Query: 149 TQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI-EAKP-GIAFVEFEDDVQS 206
T+ N ILF++NL ++ T L LF +Y +++R+ EAK G AFV ++D + +
Sbjct: 8 TKLPPGANRILFVKNLNYQITGEDLYDLFGRYGSIRQIRIGNEAKTKGTAFVVYDDVMDA 67
Query: 207 SMAMQALQGFKI 218
A+ L GF +
Sbjct: 68 KNALDHLNGFHL 79
>gi|334324402|ref|XP_003340516.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q [Monodelphis
domestica]
Length = 588
Score = 51.2 bits (121), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQILEEFSKVTEGLTDVILYHQ 278
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 279 PDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 337
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 338 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 372
>gi|442752715|gb|JAA68517.1| Putative 14 kda subunit splicing factor 3b [Ixodes ricinus]
Length = 119
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 11 LPPEVNRILYVRNLPYKISGEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 66
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NA + F ++ + + Y
Sbjct: 67 DAKNACDHLSGFNVCNRYLVVLY 89
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N IL+++NLP++ + + +F +Y +++R+ G AFV +ED + A L
Sbjct: 16 NRILYVRNLPYKISGEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 75
Query: 214 QGFKITPQNPMAITF 228
GF + + + + +
Sbjct: 76 SGFNVCNRYLVVLYY 90
>gi|169860805|ref|XP_001837037.1| pre-mRNA branch site protein p14 [Coprinopsis cinerea
okayama7#130]
gi|116501759|gb|EAU84654.1| pre-mRNA branch site protein p14 [Coprinopsis cinerea
okayama7#130]
Length = 122
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 3 TGDIPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
T +PP N+ +++KNLN I E+L Y LF +YG I + K +G A+VV+
Sbjct: 7 TSKLPPGANRILFVKNLNYTITGEDL----YELFGRYGSIRQIRIGNEAKTKGTAFVVYD 62
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQY 86
+V A NA+ + F ++ + + Y
Sbjct: 63 DVMDAKNALDHLNGFHLQERYIVVLY 88
Score = 43.1 bits (100), Expect = 0.098, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 2/65 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI-EAKP-GIAFVEFEDDVQSSMAMQAL 213
N ILF++NL + T L LF +Y +++R+ EAK G AFV ++D + + A+ L
Sbjct: 15 NRILFVKNLNYTITGEDLYELFGRYGSIRQIRIGNEAKTKGTAFVVYDDVMDAKNALDHL 74
Query: 214 QGFKI 218
GF +
Sbjct: 75 NGFHL 79
>gi|440577389|emb|CCI55413.1| PH01B015M02.14 [Phyllostachys edulis]
Length = 130
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 140 TAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAF 197
+A S R +N + N +L+++NLP +S + +F +Y +++R+ AK G AF
Sbjct: 2 SAVSLRKSNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRLGNAKDTRGTAF 61
Query: 198 VEFEDDVQSSMAMQALQGFKITPQNPMAITF 228
V +ED + A+ L GF + + + + +
Sbjct: 62 VVYEDIYDAKNAVDHLSGFNVANRYLIVLYY 92
Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL I EE+ Y +F +YG I + RG A+VV+ ++
Sbjct: 13 LPPEVNRVLYVRNLPFNISSEEM----YDIFGKYGAIRQIRLGNAKDTRGTAFVVYEDIY 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAK-----SKSDCVAKED 98
A NAV + F ++ + + Y + KSD KED
Sbjct: 69 DAKNAVDHLSGFNVANRYLIVLYYQPTKMSKKSDFKKKED 108
>gi|326918852|ref|XP_003205700.1| PREDICTED: RNA-binding protein 41-like [Meleagris gallopavo]
Length = 305
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+ +Y+KNL ++ ++L SL+ F Q L + ++RGQA++ F ++ +A +
Sbjct: 203 PNKVLYVKNLGPRVTMKDLV-SLFARFQQEDSRPIQFRLLSGRMRGQAFITFPDIQSAQD 261
Query: 68 AVRQMQNFPFYDKPMRIQYAKSK 90
A+ + + KPM I++ KSK
Sbjct: 262 AMLLVNGYRLQGKPMVIEFGKSK 284
>gi|344264675|ref|XP_003404417.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 3
[Loxodonta africana]
Length = 585
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 53/218 (24%), Positives = 91/218 (41%), Gaps = 20/218 (9%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 165 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 223
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEEKAERKRRAEEAQQSSMANGT 132
I+ K C++ + +P+ K K E+ E + E +
Sbjct: 224 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTK--EQILEEFSKVTEGLTDVILYHQ 275
Query: 133 GAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK 192
F +TAA +LF++NL + T +LE F Q+ + V+ ++
Sbjct: 276 PDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKLKD- 334
Query: 193 PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
AF+ F++ + AM+ + G + +N + I FAK
Sbjct: 335 --YAFIHFDERDGAVKAMEEMNGKDLEGEN-IEIVFAK 369
>gi|229366700|gb|ACQ58330.1| Pre-mRNA branch site protein p14 [Anoplopoma fimbria]
gi|229367116|gb|ACQ58538.1| Pre-mRNA branch site protein p14 [Anoplopoma fimbria]
gi|229368134|gb|ACQ59047.1| Pre-mRNA branch site protein p14 [Anoplopoma fimbria]
Length = 125
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYVRNLPYKITAEEM----YDIFGKYGPIRQIRTGNTPESRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y + + +F + KKK+E+
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYNA--------NRAFQKMDTKKKEEQ 109
Score = 40.8 bits (94), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+++NLP++ T+ + +F +Y +++R G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYVRNLPYKITAEEMYDIFGKYGPIRQIRTGNTPESRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKIT 219
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNVC 83
>gi|374256077|gb|AEZ00900.1| putative RNA recognition motif-containing protein, partial [Elaeis
guineensis]
Length = 294
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 42/71 (59%), Gaps = 8/71 (11%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK---PG-----IAFVEFEDDVQSS 207
+N LF++ LP T + +F+ + GF+EVR++ + PG + FV+F Q++
Sbjct: 180 SNTLFVEGLPANCTRREVSHIFRPFVGFREVRLVNKESRHPGGDPLVLCFVDFSTPAQAA 239
Query: 208 MAMQALQGFKI 218
+A+ ALQG+K
Sbjct: 240 VALDALQGYKF 250
>gi|148225624|ref|NP_001079940.1| splicing factor 3B, 14 kDa subunit [Xenopus laevis]
gi|34785490|gb|AAH57709.1| MGC68842 protein [Xenopus laevis]
Length = 125
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIRNLPYKITGEEM----YDIFGKYGPIRQIRVGNTPESRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NA + F ++ + + Y
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLY 91
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 39/77 (50%), Gaps = 2/77 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+I+NLP++ T + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITGEEMYDIFGKYGPIRQIRVGNTPESRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKIT 219
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNVC 83
>gi|157821519|ref|NP_001102890.1| RNA binding motif protein 41 [Rattus norvegicus]
gi|149022081|gb|EDL78975.1| rCG26849, isoform CRA_a [Rattus norvegicus]
Length = 413
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 48/83 (57%), Gaps = 1/83 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+ +Y+KNL+ ++K+ +L SL+ F + + T ++RGQA++ F A
Sbjct: 307 PNKVLYLKNLSPRVKERDLI-SLFARFQEKKGPLIQFQMMTGRMRGQAFITFPNKDIAWQ 365
Query: 68 AVRQMQNFPFYDKPMRIQYAKSK 90
A+ Q+ + Y K + I++AKS+
Sbjct: 366 ALHQINGYKLYGKILVIEFAKSR 388
>gi|159164545|pdb|2FHO|B Chain B, Nmr Solution Structure Of The Human Spliceosomal Protein
Complex P14-Sf3b155
Length = 87
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 7 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 62
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NA + F ++ + + Y
Sbjct: 63 DAKNACDHLSGFNVCNRYLVVLY 85
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 2/75 (2%)
Query: 147 ANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDV 204
AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 3 ANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 62
Query: 205 QSSMAMQALQGFKIT 219
+ A L GF +
Sbjct: 63 DAKNACDHLSGFNVC 77
>gi|449447147|ref|XP_004141330.1| PREDICTED: uncharacterized protein LOC101211987 [Cucumis sativus]
gi|449486681|ref|XP_004157367.1| PREDICTED: uncharacterized protein LOC101228687 [Cucumis sativus]
Length = 246
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 47/87 (54%), Gaps = 12/87 (13%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG--------IAFVEFEDDVQSS 207
+N+LF+ LP + T + LF+ + G+K++R++ +P + FVEF + S
Sbjct: 147 SNVLFVDGLPTDCTRREVGHLFRPFMGYKDIRVVHKEPRRTGDKAMVLCFVEFVEAKFSQ 206
Query: 208 MAMQALQGFKITPQNP----MAITFAK 230
AM+ALQG+K + P + I FA
Sbjct: 207 AAMEALQGYKFDDKKPDSPVLKIQFAH 233
>gi|402226279|gb|EJU06339.1| RNA-binding domain-containing protein [Dacryopinax sp. DJM-731
SS1]
Length = 123
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 28/83 (33%), Positives = 45/83 (54%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +++KNLN I E+L Y LF +YG I + K RG A+VV+ +V
Sbjct: 11 LPPGANRILFVKNLNYTITGEDL----YDLFGRYGTIRQIRLGNEQKTRGTAFVVYDDVM 66
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NA+ + F ++ + + Y
Sbjct: 67 DAKNALDHLNGFHLQERYIVVLY 89
Score = 42.0 bits (97), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 42/80 (52%), Gaps = 3/80 (3%)
Query: 141 AASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFV 198
+A R AN A N ILF++NL + T L LF +Y +++R+ + G AFV
Sbjct: 2 SAIIRPANKLPPGA-NRILFVKNLNYTITGEDLYDLFGRYGTIRQIRLGNEQKTRGTAFV 60
Query: 199 EFEDDVQSSMAMQALQGFKI 218
++D + + A+ L GF +
Sbjct: 61 VYDDVMDAKNALDHLNGFHL 80
>gi|281205884|gb|EFA80073.1| hypothetical protein PPL_06895 [Polysphondylium pallidum PN500]
Length = 639
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 39/69 (56%), Gaps = 2/69 (2%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI--EAKPGIAFVEFEDDVQSSMAMQAL 213
N LF NLP + T L +LF+ GF VR++ + K I F +F +++AM+ L
Sbjct: 553 NTTLFFSNLPKDVTERELSILFRFMRGFLNVRLVQRDGKYPICFCDFRGVPSAAIAMEML 612
Query: 214 QGFKITPQN 222
GFK+ P++
Sbjct: 613 NGFKMDPKD 621
>gi|328766633|gb|EGF76686.1| hypothetical protein BATDEDRAFT_92475 [Batrachochytrium
dendrobatidis JAM81]
Length = 118
Score = 50.8 bits (120), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/85 (31%), Positives = 46/85 (54%), Gaps = 2/85 (2%)
Query: 147 ANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFEDDV 204
AN + N ILFI+NLP++ T+ + LF +Y +++RM A+ G AFV ++D
Sbjct: 7 ANVRLPPEVNRILFIRNLPYKITTEDMYDLFGKYGSIRQIRMGNAQDTRGTAFVIYDDIF 66
Query: 205 QSSMAMQALQGFKITPQNPMAITFA 229
+ A L GF + + + + F+
Sbjct: 67 DAKAACDHLSGFNLQGRYLVVLYFS 91
>gi|270009865|gb|EFA06313.1| hypothetical protein TcasGA2_TC009182 [Tribolium castaneum]
Length = 748
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
Query: 142 ASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI---EAKP-GIAF 197
A F+ +N ET N LF++ LP++ + +E +F+ + G K VR++ + KP G+A+
Sbjct: 607 AGFKYSNEPET----NKLFVKGLPYDKSQEEIEAIFRPF-GAKTVRLVCRRDGKPKGLAY 661
Query: 198 VEFEDDVQSSMAMQALQGFKI 218
VEFEDD + AM+ G +
Sbjct: 662 VEFEDDASAKKAMEKTDGMTV 682
>gi|242025590|ref|XP_002433207.1| conserved hypothetical protein [Pediculus humanus corporis]
gi|212518748|gb|EEB20469.1| conserved hypothetical protein [Pediculus humanus corporis]
Length = 126
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI EE+ Y +F +YG I + TP RG A+VV+ ++
Sbjct: 13 LPPEVNRILYVRNLPYKITGEEM----YDIFGKYGAIRQIRVGNTPDTRGTAFVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
A NA + F ++ + + Y ++
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYQA 94
Score = 43.5 bits (101), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEFED 202
+ AN + N IL+++NLP++ T + +F +Y +++R+ G AFV +ED
Sbjct: 7 KRANVRLPPEVNRILYVRNLPYKITGEEMYDIFGKYGAIRQIRVGNTPDTRGTAFVVYED 66
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 67 IFDAKNACDHLSGFNVCNRYLVVLYY 92
>gi|356554173|ref|XP_003545423.1| PREDICTED: pre-mRNA branch site p14-like protein-like [Glycine max]
Length = 124
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 141 AASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFV 198
A S R NT+ N +L+++NLP TS + +F +Y +++R+ K G AF+
Sbjct: 3 AISLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTNKDTRGTAFI 62
Query: 199 EFEDDVQSSMAMQALQGFKITPQNPMAITF 228
+ED + A+ L GF + + + + +
Sbjct: 63 VYEDIYDAKTAVDHLSGFNVANRYLIVLYY 92
Score = 42.7 bits (99), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 31/111 (27%), Positives = 55/111 (49%), Gaps = 14/111 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL I EE +Y +F +YG I + RG A++V+ ++
Sbjct: 13 LPPEVNRVLYVRNLPFNITSEE----MYDIFGKYGAIRQIRIGTNKDTRGTAFIVYEDIY 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKA 114
A AV + F ++ + + Y + AK F ++KKK++E A
Sbjct: 69 DAKTAVDHLSGFNVANRYLIVLYYQQ-----AKMSKKF---DQKKKEDEIA 111
>gi|388498942|gb|AFK37537.1| unknown [Lotus japonicus]
gi|388512157|gb|AFK44140.1| unknown [Lotus japonicus]
Length = 125
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/88 (28%), Positives = 45/88 (51%), Gaps = 2/88 (2%)
Query: 143 SFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFVEF 200
S R NT+ N +L+++NLP TS + +F +Y +++R+ K G AFV +
Sbjct: 5 SLRKGNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGTTKDTRGTAFVVY 64
Query: 201 EDDVQSSMAMQALQGFKITPQNPMAITF 228
ED + A+ L GF + + + + +
Sbjct: 65 EDIYDAKTAVDHLSGFNVANRYLIVLYY 92
Score = 45.4 bits (106), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 33/111 (29%), Positives = 56/111 (50%), Gaps = 14/111 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL I EE+ Y +F +YG I + T RG A+VV+ ++
Sbjct: 13 LPPEVNRVLYVRNLPFNITSEEM----YDIFGKYGAIRQIRIGTTKDTRGTAFVVYEDIY 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKA 114
A AV + F ++ + + Y + AK F ++KKK++E A
Sbjct: 69 DAKTAVDHLSGFNVANRYLIVLYYQQ-----AKMSKKF---DQKKKEDEIA 111
>gi|91086239|ref|XP_972538.1| PREDICTED: similar to Squamous cell carcinoma antigen recognized by
T-cells 3 (SART-3) (mSART-3) (Tumor-rejection antigen
SART3) [Tribolium castaneum]
Length = 758
Score = 50.8 bits (120), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 29/81 (35%), Positives = 48/81 (59%), Gaps = 9/81 (11%)
Query: 142 ASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI---EAKP-GIAF 197
A F+ +N ET N LF++ LP++ + +E +F+ + G K VR++ + KP G+A+
Sbjct: 617 AGFKYSNEPET----NKLFVKGLPYDKSQEEIEAIFRPF-GAKTVRLVCRRDGKPKGLAY 671
Query: 198 VEFEDDVQSSMAMQALQGFKI 218
VEFEDD + AM+ G +
Sbjct: 672 VEFEDDASAKKAMEKTDGMTV 692
>gi|350536139|ref|NP_001234487.1| DNA-binding protein [Solanum lycopersicum]
gi|40804404|gb|AAR91698.1| DNA-binding protein [Solanum lycopersicum]
Length = 428
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 70/138 (50%), Gaps = 21/138 (15%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N T+++ L+ ++ EEL++S FSQ+G +VV++K P +G +V FSE +AA +A
Sbjct: 295 NTTVFVGGLDSEVTDEELRQS----FSQFG---NVVSVKIPAGKGCGFVQFSERSAAEDA 347
Query: 69 VRQMQNFPFYDKPMRIQYAKS------KSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
+ ++ + +R+ + ++ ++D ++ +G + R+ A +
Sbjct: 348 IEKLNGTVIGAQTVRLSWGRNPANKQFRTDSGSQWNGGYYGRQN------YGGYGYGASQ 401
Query: 123 AQQSSMANGT--GAQSNG 138
+Q S G GA SNG
Sbjct: 402 SQDSMYGAGAAHGASSNG 419
>gi|158290541|ref|XP_312143.4| AGAP002780-PA [Anopheles gambiae str. PEST]
gi|157017945|gb|EAA07781.4| AGAP002780-PA [Anopheles gambiae str. PEST]
Length = 126
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/86 (31%), Positives = 48/86 (55%), Gaps = 6/86 (6%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI +E+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRVLYVRNLPYKITSDEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
A NA + F ++ + + Y +S
Sbjct: 69 DAKNARDHLSGFNVCNRYLVVLYYQS 94
Score = 43.1 bits (100), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 40/75 (53%), Gaps = 2/75 (2%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N +L+++NLP++ TS + +F +Y +++R+ G AFV +ED + A L
Sbjct: 18 NRVLYVRNLPYKITSDEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNARDHL 77
Query: 214 QGFKITPQNPMAITF 228
GF + + + + +
Sbjct: 78 SGFNVCNRYLVVLYY 92
>gi|56758208|gb|AAW27244.1| SJCHGC09413 protein [Schistosoma japonicum]
Length = 214
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 26/75 (34%), Positives = 41/75 (54%), Gaps = 8/75 (10%)
Query: 141 AASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEF 200
AA +R+ T+ ++I +LP E + LE +F++Y + V + PG AFVEF
Sbjct: 2 AARYRDVGTK--------VYIGDLPREASERELERIFREYGRLRNVWVARNPPGFAFVEF 53
Query: 201 EDDVQSSMAMQALQG 215
ED +S A++ L G
Sbjct: 54 EDAADASDAVRELDG 68
>gi|82621116|gb|ABB86246.1| DNA-binding protein-like [Solanum tuberosum]
Length = 423
Score = 50.4 bits (119), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 36/138 (26%), Positives = 69/138 (50%), Gaps = 21/138 (15%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N T+++ L+ + EEL++S FSQ+G +VV++K P +G +V FSE +AA +A
Sbjct: 290 NTTVFVGGLDSDVTDEELRQS----FSQFG---NVVSVKIPAGKGCGFVQFSERSAAEDA 342
Query: 69 VRQMQNFPFYDKPMRIQYAKS------KSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
+ ++ + +R+ + ++ ++D ++ +G + R+ A +
Sbjct: 343 IEKLNGTVIGTQTVRLSWGRNPANKQFRTDSGSQWNGGYYGRQN------YGGYGYGASQ 396
Query: 123 AQQSSMANGT--GAQSNG 138
+Q S G GA SNG
Sbjct: 397 SQDSMYGAGAAHGASSNG 414
>gi|47680295|gb|AAT37131.1| arginine/serine-rich splicing factor 1 [Zea mays]
gi|47680367|gb|AAT37122.1| arginine/serine-rich splicing factor 1 [Zea mays]
gi|195634831|gb|ACG36884.1| arginine/serine-rich splicing factor RSP41 [Zea mays]
Length = 240
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 159 LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
+F+ NL ++T S L+ LF +Y V I+ K G AFV FED+ S A++AL G+
Sbjct: 4 VFVGNLDYDTRHSELDHLFYRY---GRVERIDMKSGFAFVYFEDERDGSDAIRALDGYPF 60
Query: 219 TP 220
P
Sbjct: 61 GP 62
Score = 43.5 bits (101), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
+ +++ NL+ + EL LF +YGR+ + + +K+ G A+V F + S+A+
Sbjct: 2 RPVFVGNLDYDTRHSELD----HLFYRYGRV-ERIDMKS----GFAFVYFEDERDGSDAI 52
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS 100
R + +PF R+ S+ D A+ DG+
Sbjct: 53 RALDGYPFGPGRRRLSVEWSRGDRAARRDGN 83
>gi|242094342|ref|XP_002437661.1| hypothetical protein SORBIDRAFT_10g000350 [Sorghum bicolor]
gi|241915884|gb|EER89028.1| hypothetical protein SORBIDRAFT_10g000350 [Sorghum bicolor]
Length = 822
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP-KLRGQAWVVFSEVTAAS 66
P++T++++N+N ++ EL+ LF QYG D+ L T K RG + + ++ AA
Sbjct: 172 PSRTLFVRNINSNVEDSELR----SLFEQYG---DIRTLYTATKHRGFVMISYFDIRAAR 224
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKE 97
NA+R +QN P + + I ++ K + K+
Sbjct: 225 NAMRALQNKPLRRRKLDIHFSIPKENPSDKD 255
>gi|413953603|gb|AFW86252.1| hypothetical protein ZEAMMB73_610467 [Zea mays]
Length = 847
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 28/91 (30%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP-KLRGQAWVVFSEVTAAS 66
P++T++++N+N ++ EL+ LF QYG D+ L T K RG + + ++ AA
Sbjct: 196 PSRTLFVRNINSNVEDSELR----SLFEQYG---DIRTLYTATKHRGFVMISYFDIRAAR 248
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKE 97
NA+R +QN P + + I ++ K + K+
Sbjct: 249 NAMRALQNKPLRRRKLDIHFSIPKENPSDKD 279
>gi|359491581|ref|XP_002280892.2| PREDICTED: protein MEI2-like 4-like [Vitis vinifera]
Length = 991
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP-KLRGQAWVVFSEVTAAS 66
P++T++++N+N ++ EL+ LF QYG D+ L T K RG + + ++ AA
Sbjct: 272 PSRTLFVRNINSNVEDSELRD----LFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 324
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKE 97
NA+R +QN P + + I Y+ K + K+
Sbjct: 325 NAMRALQNKPLRRRKLDIHYSIPKDNPSEKD 355
>gi|297734509|emb|CBI15756.3| unnamed protein product [Vitis vinifera]
Length = 998
Score = 50.4 bits (119), Expect = 6e-04, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP-KLRGQAWVVFSEVTAAS 66
P++T++++N+N ++ EL+ LF QYG D+ L T K RG + + ++ AA
Sbjct: 278 PSRTLFVRNINSNVEDSELRD----LFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 330
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKE 97
NA+R +QN P + + I Y+ K + K+
Sbjct: 331 NAMRALQNKPLRRRKLDIHYSIPKDNPSEKD 361
>gi|23956384|ref|NP_705814.1| RNA-binding protein 41 isoform 2 [Mus musculus]
gi|81914521|sp|Q8JZV4.1|RBM41_MOUSE RecName: Full=RNA-binding protein 41; AltName: Full=RNA-binding
motif protein 41
gi|22477722|gb|AAH37024.1| RNA binding motif protein 41 [Mus musculus]
gi|26351139|dbj|BAC39206.1| unnamed protein product [Mus musculus]
gi|26351197|dbj|BAC39235.1| unnamed protein product [Mus musculus]
gi|148691973|gb|EDL23920.1| RNA binding motif protein 41, isoform CRA_a [Mus musculus]
Length = 413
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+ +Y+KNL+ ++K+ +L SL+ F + + T ++RGQA++ F A
Sbjct: 307 PNKVLYLKNLSPRVKERDLI-SLFARFQEKKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQ 365
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+ Q+ + Y K + I++AKSK A + S +
Sbjct: 366 ALHQINGYKLYGKILVIEFAKSKKQQSAVQRSSLI 400
>gi|288541344|ref|NP_001165618.1| RNA-binding protein 41 isoform 1 [Mus musculus]
Length = 425
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+ +Y+KNL+ ++K+ +L SL+ F + + T ++RGQA++ F A
Sbjct: 319 PNKVLYLKNLSPRVKERDLI-SLFARFQEKKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQ 377
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+ Q+ + Y K + I++AKSK A + S +
Sbjct: 378 ALHQINGYKLYGKILVIEFAKSKKQQSAVQRSSLI 412
>gi|115456147|ref|NP_001051674.1| Os03g0811700 [Oryza sativa Japonica Group]
gi|32129324|gb|AAP73851.1| putative RNA binding protein [Oryza sativa Japonica Group]
gi|108711702|gb|ABF99497.1| Pre-mRNA branch site p14, putative, expressed [Oryza sativa
Japonica Group]
gi|113550145|dbj|BAF13588.1| Os03g0811700 [Oryza sativa Japonica Group]
gi|215765248|dbj|BAG86945.1| unnamed protein product [Oryza sativa Japonica Group]
gi|215768366|dbj|BAH00595.1| unnamed protein product [Oryza sativa Japonica Group]
gi|218193969|gb|EEC76396.1| hypothetical protein OsI_14028 [Oryza sativa Indica Group]
gi|222626029|gb|EEE60161.1| hypothetical protein OsJ_13072 [Oryza sativa Japonica Group]
Length = 130
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/90 (27%), Positives = 47/90 (52%), Gaps = 2/90 (2%)
Query: 141 AASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFV 198
A S R +N + N +L+++NLP +S + +F +Y +++R+ AK G AFV
Sbjct: 3 AVSLRKSNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRLGNAKDTRGTAFV 62
Query: 199 EFEDDVQSSMAMQALQGFKITPQNPMAITF 228
+ED + A+ L GF + + + + +
Sbjct: 63 VYEDIYDAKNAVDHLSGFNVANRYLIVLYY 92
Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 30/100 (30%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL I EE+ Y +F +YG I + RG A+VV+ ++
Sbjct: 13 LPPEVNRVLYVRNLPFNISSEEM----YDIFGKYGAIRQIRLGNAKDTRGTAFVVYEDIY 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAK-----SKSDCVAKED 98
A NAV + F ++ + + Y + KSD KE+
Sbjct: 69 DAKNAVDHLSGFNVANRYLIVLYYQPAKMSKKSDVKKKEE 108
>gi|384499818|gb|EIE90309.1| hypothetical protein RO3G_15020 [Rhizopus delemar RA 99-880]
Length = 294
Score = 50.4 bits (119), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 49/83 (59%), Gaps = 4/83 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P+ +YIKNL++K +++L++ ++S + + V ++ KLR QA+V F + A
Sbjct: 216 PSARLYIKNLHKKCSEQDLQQ----IYSAFSKDIQVNLMRKGKLRDQAFVTFPDEKVAKL 271
Query: 68 AVRQMQNFPFYDKPMRIQYAKSK 90
A+ + +D+PM + ++KSK
Sbjct: 272 ALESTNGYVLHDRPMAVLFSKSK 294
>gi|413917962|gb|AFW57894.1| arginine/serine-rich splicing factor 1 variant 3 [Zea mays]
Length = 223
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/62 (40%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 159 LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
+F+ NL ++T S L+ LF +Y V I+ K G AFV FED+ S A++AL G+
Sbjct: 4 VFVGNLDYDTRHSELDHLFYRY---GRVERIDMKSGFAFVYFEDERDGSDAIRALDGYPF 60
Query: 219 TP 220
P
Sbjct: 61 GP 62
Score = 43.5 bits (101), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 25/91 (27%), Positives = 47/91 (51%), Gaps = 9/91 (9%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
+ +++ NL+ + EL LF +YGR+ + + +K+ G A+V F + S+A+
Sbjct: 2 RPVFVGNLDYDTRHSELD----HLFYRYGRV-ERIDMKS----GFAFVYFEDERDGSDAI 52
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGS 100
R + +PF R+ S+ D A+ DG+
Sbjct: 53 RALDGYPFGPGRRRLSVEWSRGDRAARRDGN 83
>gi|74218798|dbj|BAE37811.1| unnamed protein product [Mus musculus]
Length = 425
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+ +Y+KNL+ ++K+ +L SL+ F + + T ++RGQA++ F A
Sbjct: 319 PNKVLYLKNLSPRVKERDLI-SLFARFQEKKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQ 377
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+ Q+ + Y K + I++AKSK A + S +
Sbjct: 378 ALHQINGYKLYGKILVIEFAKSKKQQSAVQRSSLI 412
>gi|254582212|ref|XP_002497091.1| ZYRO0D15224p [Zygosaccharomyces rouxii]
gi|238939983|emb|CAR28158.1| ZYRO0D15224p [Zygosaccharomyces rouxii]
Length = 86
Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N+T+Y+ NL++ I + L+ LY LFS G + V++ K RGQA+V V ++ A
Sbjct: 2 NKTLYVHNLSDGIGSQRLREQLYLLFSTCGEVVK-VSVNVRKNRGQAFVTMKTVDESNLA 60
Query: 69 VRQMQNFPFYDKPMRIQYAKSKS 91
V + F + + +++ K ++
Sbjct: 61 VGLLNGETFMGRTLSVEFGKQET 83
>gi|387915104|gb|AFK11161.1| pre-mRNA branch site protein p14 [Callorhinchus milii]
Length = 124
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 34/108 (31%), Positives = 56/108 (51%), Gaps = 11/108 (10%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQY-----AKSKSDCVAKEDGSFVPREK 106
A +A + F ++ + + Y A K D KE+ + +EK
Sbjct: 69 DAKSACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQLKILKEK 116
Score = 42.0 bits (97), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 67 IFDAKSACDHLSGFNVCNRYLVVLYY 92
>gi|21357707|ref|NP_648037.1| CG13298 [Drosophila melanogaster]
gi|125980386|ref|XP_001354217.1| GA12181 [Drosophila pseudoobscura pseudoobscura]
gi|194752207|ref|XP_001958414.1| GF10910 [Drosophila ananassae]
gi|194867575|ref|XP_001972100.1| GG14070 [Drosophila erecta]
gi|195167582|ref|XP_002024612.1| GL22529 [Drosophila persimilis]
gi|195337891|ref|XP_002035559.1| GM13852 [Drosophila sechellia]
gi|195492249|ref|XP_002093910.1| GE20495 [Drosophila yakuba]
gi|195588202|ref|XP_002083847.1| GD13137 [Drosophila simulans]
gi|32699626|sp|Q9VRV7.1|PM14_DROME RecName: Full=Pre-mRNA branch site p14-like protein
gi|7295357|gb|AAF50675.1| CG13298 [Drosophila melanogaster]
gi|19528453|gb|AAL90341.1| RE19804p [Drosophila melanogaster]
gi|38048139|gb|AAR09972.1| similar to Drosophila melanogaster CG13298, partial [Drosophila
yakuba]
gi|54642523|gb|EAL31270.1| GA12181 [Drosophila pseudoobscura pseudoobscura]
gi|190625696|gb|EDV41220.1| GF10910 [Drosophila ananassae]
gi|190653883|gb|EDV51126.1| GG14070 [Drosophila erecta]
gi|194108017|gb|EDW30060.1| GL22529 [Drosophila persimilis]
gi|194128652|gb|EDW50695.1| GM13852 [Drosophila sechellia]
gi|194180011|gb|EDW93622.1| GE20495 [Drosophila yakuba]
gi|194195856|gb|EDX09432.1| GD13137 [Drosophila simulans]
gi|220948128|gb|ACL86607.1| CG13298-PA [synthetic construct]
gi|220957372|gb|ACL91229.1| CG13298-PA [synthetic construct]
Length = 121
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI +E+ Y +F ++G I + TP+ RG A+VV+ ++
Sbjct: 9 LPPEVNRLLYVRNLPYKITSDEM----YDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIF 64
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y +S + +F + KKQEE
Sbjct: 65 DAKNACDHLSGFNVCNRYLVVLYYQS--------NKAFKRVDMDKKQEE 105
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N +L+++NLP++ TS + +F ++ +++R+ G AFV +ED + A L
Sbjct: 14 NRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 73
Query: 214 QGFKIT 219
GF +
Sbjct: 74 SGFNVC 79
>gi|195427713|ref|XP_002061921.1| GK17258 [Drosophila willistoni]
gi|194158006|gb|EDW72907.1| GK17258 [Drosophila willistoni]
Length = 121
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI +E+ Y +F ++G I + TP+ RG A+VV+ ++
Sbjct: 9 LPPEVNRLLYVRNLPYKITSDEM----YDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIF 64
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y +S + +F + KKQEE
Sbjct: 65 DAKNACDHLSGFNVCNRYLVVLYYQS--------NKAFKRVDMDKKQEE 105
Score = 41.2 bits (95), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N +L+++NLP++ TS + +F ++ +++R+ G AFV +ED + A L
Sbjct: 14 NRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 73
Query: 214 QGFKIT 219
GF +
Sbjct: 74 SGFNVC 79
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/226 (23%), Positives = 96/226 (42%), Gaps = 53/226 (23%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAV 69
+Y+KNL+E E+LK+ +FS YG I + +K K RG +V F +A+ AV
Sbjct: 214 VYVKNLSETTSDEDLKK----IFSSYGAITSAIVMKDQNGKSRGFGFVNFQSPDSAAAAV 269
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMA 129
++ F DK + A ++K E +AE K + E+
Sbjct: 270 EKLNGMTFSDKVWYVGRA-------------------QRKGEREAELKAKFEQE------ 304
Query: 130 NGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI 189
RN+ ++ A N L+++NL L+ LF ++ +++
Sbjct: 305 ---------------RNSRYEKMKAAN--LYLKNLGDTIDEERLKELFSEFGSITSCKVM 347
Query: 190 EAKPGIA----FVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+ G++ FV F ++S A+ + G K+ + P+ + A++
Sbjct: 348 LDQQGLSKGSGFVAFSTPEEASRALSEMNG-KMIGKKPLYVAIAQR 392
Score = 41.2 bits (95), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 29/92 (31%), Positives = 46/92 (50%), Gaps = 6/92 (6%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKL-RGQAWVVFSEVTAASNAV 69
+Y+KNL + I +E LK LFS++G I V L L +G +V FS AS A+
Sbjct: 317 LYLKNLGDTIDEERLKE----LFSEFGSITSCKVMLDQQGLSKGSGFVAFSTPEEASRAL 372
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF 101
+M KP+ + A+ + + +A+ F
Sbjct: 373 SEMNGKMIGKKPLYVAIAQRREERMARLQAHF 404
>gi|196005337|ref|XP_002112535.1| hypothetical protein TRIADDRAFT_8568 [Trichoplax adhaerens]
gi|190584576|gb|EDV24645.1| hypothetical protein TRIADDRAFT_8568, partial [Trichoplax
adhaerens]
Length = 96
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 47/81 (58%), Gaps = 1/81 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P++ +YIKNL++K+ +++L + + F + + L K++GQA+V FS+V A
Sbjct: 17 PSKVLYIKNLSDKVNEKDLVMT-FIGFQEDSKDNIRFRLMKGKMKGQAFVTFSDVATAGK 75
Query: 68 AVRQMQNFPFYDKPMRIQYAK 88
A+ + + KPM IQY K
Sbjct: 76 ALDVVNGYKLKGKPMVIQYGK 96
Score = 39.7 bits (91), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 12/88 (13%)
Query: 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE-------VRMIEAK-PGIAFVEFED 202
E P+ +L+I+NL + L M F GF+E R+++ K G AFV F D
Sbjct: 13 EQGEPSKVLYIKNLSDKVNEKDLVMTF---IGFQEDSKDNIRFRLMKGKMKGQAFVTFSD 69
Query: 203 DVQSSMAMQALQGFKITPQNPMAITFAK 230
+ A+ + G+K+ + PM I + K
Sbjct: 70 VATAGKALDVVNGYKLKGK-PMVIQYGK 96
>gi|225703554|gb|ACO07623.1| Pre-mRNA branch site protein p14 [Oncorhynchus mykiss]
Length = 125
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/72 (37%), Positives = 41/72 (56%), Gaps = 6/72 (8%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRTGNTPESRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNF 75
A NA + F
Sbjct: 69 DAKNAYDHLSGF 80
Score = 41.6 bits (96), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 43/86 (50%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRTGNTPESRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 67 IFDAKNAYDHLSGFNVCNRYLVVLCY 92
>gi|168034238|ref|XP_001769620.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162679162|gb|EDQ65613.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 457
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRI---FDVVALKTPKLRGQAWVVFSEVTA 64
P+Q +YIKNL +++ E+L F +V ++ ++RGQA+V F A
Sbjct: 367 PSQVLYIKNLAKEVTSEDLFYVFGAFFPTLDETKAALNVNLMQEGRMRGQAFVTFPSTEA 426
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKS 91
A +A+ F KPM +Q+ +++S
Sbjct: 427 AQDALGLTHGFVLKGKPMIVQFGRNRS 453
>gi|156541620|ref|XP_001600639.1| PREDICTED: pre-mRNA branch site p14-like protein-like [Nasonia
vitripennis]
Length = 126
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + T + RG A+VV+ ++
Sbjct: 14 LPPEVNRVLYIRNLPYKITAEEM----YDIFGKYGAIRQIRVGNTAETRGTAFVVYEDIF 69
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
A NA + F ++ + + Y +S
Sbjct: 70 DAKNACDHLSGFNVCNRYLVVLYYQS 95
Score = 45.8 bits (107), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
R AN + N +L+I+NLP++ T+ + +F +Y +++R+ G AFV +ED
Sbjct: 8 RRANVRLPPEVNRVLYIRNLPYKITAEEMYDIFGKYGAIRQIRVGNTAETRGTAFVVYED 67
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 68 IFDAKNACDHLSGFNVCNRYLVVLYY 93
>gi|170596504|ref|XP_001902788.1| RNA-binding protein. [Brugia malayi]
gi|158589316|gb|EDP28363.1| RNA-binding protein., putative [Brugia malayi]
Length = 130
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 36/65 (55%)
Query: 159 LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
+F+ LP++ +S LE F +Y K+V + PG AF+EFED + A++ L G +I
Sbjct: 12 VFVGGLPNDASSEELEEAFSKYGRIKKVWLARRPPGFAFIEFEDSRDAEDAVKGLDGTRI 71
Query: 219 TPQNP 223
P
Sbjct: 72 CGVRP 76
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 52/235 (22%), Positives = 100/235 (42%), Gaps = 52/235 (22%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFS 60
T P +Y+KNL+E I E+L++ +F YG I + +K T K RG +V F
Sbjct: 217 TNGSPKFTNVYVKNLSETITNEDLEK----VFGVYGTITSALVMKDQTGKSRGFGFVNFQ 272
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
+ +A+ AV ++ + A +D ++ ++K E +AE K +
Sbjct: 273 DPDSAAAAVEKL------------------NGTTAHDDKAWYVGRAQRKSEREAELKAKF 314
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
E+ RN+ + A N L+++NL L+ LF ++
Sbjct: 315 EQE---------------------RNSRYERLKAAN--LYLKNLDDNINDVKLKELFSEF 351
Query: 181 PGFKEVRMIEAKPGIA----FVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+++ G++ FV F ++S A++ + G K+ + P+ + A++
Sbjct: 352 GSITSCKVMLDHQGVSKGSGFVAFSTPEEASRALKEMNG-KMIGRKPLYVAIAQR 405
Score = 42.0 bits (97), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 7/82 (8%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLR---GQAWVVFSEVTAA 65
N ++Y+ +L + + +E+L Y LFSQ ++ V + R G +V FS A
Sbjct: 44 NLSLYVGDLEQNVNEEQL----YDLFSQIAQVVSVRVCRDQTKRSSLGYGYVNFSNPQDA 99
Query: 66 SNAVRQMQNFPFYDKPMRIQYA 87
+NA++ + P KP+RI ++
Sbjct: 100 ANAMKALNFTPLNGKPIRIMFS 121
>gi|195617826|gb|ACG30743.1| pre-mRNA branch site p14-like protein [Zea mays]
gi|414873579|tpg|DAA52136.1| TPA: pre-mRNA branch site p14-like protein [Zea mays]
Length = 130
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL I EE+ Y +F +YG I + RG A+VV+ ++
Sbjct: 13 LPPEVNRVLYVRNLPFNISSEEM----YDIFGKYGAIRQIRLGNAKDTRGTAYVVYEDIY 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAK-----SKSDCVAKED 98
A NAV + F ++ + + Y + KSD KED
Sbjct: 69 DAKNAVDHLSGFNVANRYLIVLYYQPAKMSKKSDVKKKED 108
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 141 AASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFV 198
AA R N + N +L+++NLP +S + +F +Y +++R+ AK G A+V
Sbjct: 3 AAGLRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRLGNAKDTRGTAYV 62
Query: 199 EFEDDVQSSMAMQALQGFKITPQNPMAITF 228
+ED + A+ L GF + + + + +
Sbjct: 63 VYEDIYDAKNAVDHLSGFNVANRYLIVLYY 92
>gi|242037653|ref|XP_002466221.1| hypothetical protein SORBIDRAFT_01g003790 [Sorghum bicolor]
gi|241920075|gb|EER93219.1| hypothetical protein SORBIDRAFT_01g003790 [Sorghum bicolor]
Length = 130
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL I EE+ Y +F +YG I + RG A+VV+ ++
Sbjct: 13 LPPEVNRVLYVRNLPFNISSEEM----YDIFGKYGAIRQIRLGNAKDTRGTAYVVYEDIY 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAK-----SKSDCVAKED 98
A NAV + F ++ + + Y + KSD KED
Sbjct: 69 DAKNAVDHLSGFNVANRYLIVLYYQPAKMSKKSDVKKKED 108
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 141 AASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFV 198
AA R N + N +L+++NLP +S + +F +Y +++R+ AK G A+V
Sbjct: 3 AAGLRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRLGNAKDTRGTAYV 62
Query: 199 EFEDDVQSSMAMQALQGFKITPQNPMAITF 228
+ED + A+ L GF + + + + +
Sbjct: 63 VYEDIYDAKNAVDHLSGFNVANRYLIVLYY 92
>gi|348518317|ref|XP_003446678.1| PREDICTED: heterogeneous nuclear ribonucleoprotein Q isoform 2
[Oreochromis niloticus]
Length = 594
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 55/238 (23%), Positives = 100/238 (42%), Gaps = 25/238 (10%)
Query: 1 MITGDIPPNQT-IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAW 56
+ +G PP T I++ KI ++ + L LF + G I+D+ + P RG A+
Sbjct: 152 VYSGSQPPVGTEIFVG----KIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSSLNRGYAF 207
Query: 57 VVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQEE 112
+ F A AV+ N I+ K C++ + +P+ K K E+
Sbjct: 208 ITFCSKEGAQEAVKLCNNH-------EIRPGKHIGVCISVANNRLFVGSIPKSKTK--EQ 258
Query: 113 KAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSM 172
E + E + F +TAA +LF++NL + T +
Sbjct: 259 IVEEFSKVTEGLSDVILYHQPDDKKKNRGFCFLEYEDHKTAAQVKVLFVRNLANGVTEEL 318
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230
LE F ++ + V+ ++ AF+ FE+ + A++ + G ++ + P+ I FAK
Sbjct: 319 LEKSFSEFGKLERVKKLKD---YAFIHFEERDGAVKALEEMNGKELEGE-PIEIVFAK 372
>gi|195127001|ref|XP_002007957.1| GI13232 [Drosophila mojavensis]
gi|193919566|gb|EDW18433.1| GI13232 [Drosophila mojavensis]
Length = 121
Score = 50.1 bits (118), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI +E+ Y +F ++G I + TP+ RG A+VV+ ++
Sbjct: 9 LPPEVNRLLYVRNLPYKITSDEM----YDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIF 64
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y +S + +F + KKQEE
Sbjct: 65 DAKNACDHLSGFNVCNRYLVVLYYQS--------NKAFKRVDVDKKQEE 105
Score = 41.6 bits (96), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N +L+++NLP++ TS + +F ++ +++R+ G AFV +ED + A L
Sbjct: 14 NRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 73
Query: 214 QGFKIT 219
GF +
Sbjct: 74 SGFNVC 79
>gi|307135827|gb|ADN33699.1| RNA-binding protein [Cucumis melo subsp. melo]
Length = 968
Score = 50.1 bits (118), Expect = 8e-04, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 51/91 (56%), Gaps = 8/91 (8%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP-KLRGQAWVVFSEVTAAS 66
P++T++++N+N ++ ELK LF QYG D+ L T K RG + + ++ AA
Sbjct: 247 PSRTLFVRNINSNVEDSELK----VLFEQYG---DIRTLYTACKHRGFVMISYYDIRAAR 299
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKE 97
NA++ +QN P + + I Y+ K + K+
Sbjct: 300 NAMKALQNKPLRRRKLDIHYSIPKDNPSEKD 330
>gi|289743103|gb|ADD20299.1| splicing factor 3B [Glossina morsitans morsitans]
Length = 121
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI +E+ Y +F ++G I + TP+ RG A+VV+ ++
Sbjct: 9 LPPEVNRLLYVRNLPYKITSDEM----YDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIF 64
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y +S + +F + KKQEE
Sbjct: 65 DAKNACDHLSGFNVCNRYLVVLYYQS--------NKAFKRLDIDKKQEE 105
Score = 41.2 bits (95), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N +L+++NLP++ TS + +F ++ +++R+ G AFV +ED + A L
Sbjct: 14 NRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 73
Query: 214 QGFKIT 219
GF +
Sbjct: 74 SGFNVC 79
>gi|156546831|ref|XP_001606302.1| PREDICTED: pre-mRNA branch site p14-like protein-like [Nasonia
vitripennis]
Length = 125
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + T + RG A+VV+ ++
Sbjct: 14 LPPEVNRVLYIRNLPYKITAEEM----YDIFGKYGAIRQIRVGNTAETRGTAFVVYEDIF 69
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
A NA + F ++ + + Y +S
Sbjct: 70 DAKNACDHLSGFNVCNRYLVVLYYQS 95
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
R AN + N +L+I+NLP++ T+ + +F +Y +++R+ G AFV +ED
Sbjct: 8 RRANVRLPPEVNRVLYIRNLPYKITAEEMYDIFGKYGAIRQIRVGNTAETRGTAFVVYED 67
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 68 IFDAKNACDHLSGFNVCNRYLVVLYY 93
>gi|116781380|gb|ABK22075.1| unknown [Picea sitchensis]
Length = 265
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 44/71 (61%), Gaps = 8/71 (11%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI--EAK-PG-----IAFVEFEDDVQSS 207
+N LF++ LP + T +F+ + GFKEVR++ EA+ PG + FV+F + ++
Sbjct: 158 SNTLFVEGLPPKCTRREAAHIFRPFVGFKEVRLVNKEARNPGGEPLVLCFVDFANPNCAA 217
Query: 208 MAMQALQGFKI 218
AM+ALQG+K
Sbjct: 218 TAMEALQGYKF 228
>gi|357110782|ref|XP_003557195.1| PREDICTED: uncharacterized protein LOC100823400 [Brachypodium
distachyon]
Length = 209
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/87 (32%), Positives = 46/87 (52%), Gaps = 12/87 (13%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG--------IAFVEFEDDVQSS 207
+NILF+ LP + + LF+ + GFK++R++ +P + FVEF D +
Sbjct: 105 SNILFVDGLPTDCKRREVAHLFRPFVGFKDLRLVHKEPRRSGDKAYVLCFVEFNDAKCAF 164
Query: 208 MAMQALQGFKITPQNP----MAITFAK 230
AMQALQ ++ + P + I FA+
Sbjct: 165 TAMQALQEYRFDERKPDAPVLKIQFAR 191
>gi|340718312|ref|XP_003397613.1| PREDICTED: pre-mRNA branch site p14-like protein-like [Bombus
terrestris]
gi|350409879|ref|XP_003488874.1| PREDICTED: pre-mRNA branch site p14-like protein-like [Bombus
impatiens]
gi|380012472|ref|XP_003690305.1| PREDICTED: pre-mRNA branch site p14-like protein-like [Apis
florea]
gi|383849069|ref|XP_003700169.1| PREDICTED: pre-mRNA branch site p14-like protein-like [Megachile
rotundata]
Length = 125
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + T + RG A+VV+ ++
Sbjct: 14 LPPEVNRVLYIRNLPYKITAEEM----YDIFGKYGAIRQIRVGNTAETRGTAFVVYEDIF 69
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
A NA + F ++ + + Y +S
Sbjct: 70 DAKNACDHLSGFNVCNRYLVVLYYQS 95
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
R AN + N +L+I+NLP++ T+ + +F +Y +++R+ G AFV +ED
Sbjct: 8 RRANVRLPPEVNRVLYIRNLPYKITAEEMYDIFGKYGAIRQIRVGNTAETRGTAFVVYED 67
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 68 IFDAKNACDHLSGFNVCNRYLVVLYY 93
>gi|307187454|gb|EFN72538.1| Pre-mRNA branch site p14-like protein [Camponotus floridanus]
gi|332016580|gb|EGI57461.1| Pre-mRNA branch site p14-like protein [Acromyrmex echinatior]
Length = 125
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/86 (32%), Positives = 47/86 (54%), Gaps = 6/86 (6%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + T + RG A+VV+ ++
Sbjct: 14 LPPEVNRVLYIRNLPYKITAEEM----YDIFGKYGAIRQIRVGNTAETRGTAFVVYEDIF 69
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
A NA + F ++ + + Y +S
Sbjct: 70 DAKNACDHLSGFNVCNRYLVVLYYQS 95
Score = 45.8 bits (107), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 44/86 (51%), Gaps = 2/86 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
R AN + N +L+I+NLP++ T+ + +F +Y +++R+ G AFV +ED
Sbjct: 8 RRANVRLPPEVNRVLYIRNLPYKITAEEMYDIFGKYGAIRQIRVGNTAETRGTAFVVYED 67
Query: 203 DVQSSMAMQALQGFKITPQNPMAITF 228
+ A L GF + + + + +
Sbjct: 68 IFDAKNACDHLSGFNVCNRYLVVLYY 93
>gi|240985422|ref|XP_002404053.1| conserved hypothetical protein [Ixodes scapularis]
gi|215491479|gb|EEC01120.1| conserved hypothetical protein [Ixodes scapularis]
Length = 95
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 46/83 (55%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 8 LPPEVNRILYVRNLPYKISGEEM----YDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIF 63
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NA + F ++ + + Y
Sbjct: 64 DAKNACDHLSGFNVCNRYLVVLY 86
Score = 40.0 bits (92), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N IL+++NLP++ + + +F +Y +++R+ G AFV +ED + A L
Sbjct: 13 NRILYVRNLPYKISGEEMYDIFGKYGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 72
Query: 214 QGFKIT 219
GF +
Sbjct: 73 SGFNVC 78
>gi|293332823|ref|NP_001168609.1| uncharacterized protein LOC100382393 [Zea mays]
gi|223949529|gb|ACN28848.1| unknown [Zea mays]
gi|413932679|gb|AFW67230.1| hypothetical protein ZEAMMB73_938561 [Zea mays]
Length = 130
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/100 (31%), Positives = 50/100 (50%), Gaps = 11/100 (11%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL I EE+ Y +F +YG I + RG A+VV+ ++
Sbjct: 13 LPPEVNRVLYVRNLPFNISSEEM----YDIFGKYGAIRQIRLGNAKDTRGTAYVVYEDIY 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAK-----SKSDCVAKED 98
A NAV + F ++ + + Y + KSD KED
Sbjct: 69 DAKNAVDHLSGFNVANRYLIVLYYQPAKMSKKSDIKKKED 108
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/90 (26%), Positives = 46/90 (51%), Gaps = 2/90 (2%)
Query: 141 AASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP--GIAFV 198
AA R N + N +L+++NLP +S + +F +Y +++R+ AK G A+V
Sbjct: 3 AAGLRKGNARLPPEVNRVLYVRNLPFNISSEEMYDIFGKYGAIRQIRLGNAKDTRGTAYV 62
Query: 199 EFEDDVQSSMAMQALQGFKITPQNPMAITF 228
+ED + A+ L GF + + + + +
Sbjct: 63 VYEDIYDAKNAVDHLSGFNVANRYLIVLYY 92
>gi|225435468|ref|XP_002285479.1| PREDICTED: uncharacterized RNA-binding protein C23E6.01c-like
isoform 1 [Vitis vinifera]
Length = 447
Score = 50.1 bits (118), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 31/90 (34%), Positives = 52/90 (57%), Gaps = 10/90 (11%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TI++ NL+ + +EELK+ +FSQ+G ++V +K P RG +V F T+A A
Sbjct: 252 NTTIFVGNLDPNVTEEELKQ----IFSQFG---ELVYVKIPAGRGCGFVQFGTRTSAEEA 304
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKED 98
+++MQ +RI + +S + AK+D
Sbjct: 305 IQRMQGTVIGQLVVRISWGRSPT---AKQD 331
Score = 37.7 bits (86), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 25/94 (26%), Positives = 47/94 (50%), Gaps = 7/94 (7%)
Query: 142 ASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQ-QYPGFKEVRMIEA-----KPGI 195
ASF + A P + +F+ +L + T +L+ F+ QYP + +++ G
Sbjct: 119 ASFGIGERRPDAGPEHSIFVGDLAPDVTDYLLQETFRAQYPSVRGAKVVTDPNTGRTKGY 178
Query: 196 AFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
FV+F D+++ + AM + G + + PM I+ A
Sbjct: 179 GFVKFSDEMERNRAMTEMNGVYCSTR-PMRISAA 211
>gi|307202215|gb|EFN81702.1| Squamous cell carcinoma antigen recognized by T-cells 3
[Harpegnathos saltator]
Length = 907
Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 142 ASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAF 197
+ F+ ++T E N LF++ LP TT LE +F+ Y KEVR++ + G+A+
Sbjct: 739 SGFKYSSTLE----KNKLFVKGLPITTTKEELEEIFKIYGALKEVRLVTYRNGHSKGLAY 794
Query: 198 VEFEDDVQSSMAMQALQGFKI 218
VE+ D+ ++ A+ + G KI
Sbjct: 795 VEYCDEATAAKALLGIDGMKI 815
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.128 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,333,398,449
Number of Sequences: 23463169
Number of extensions: 123831465
Number of successful extensions: 889076
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 1171
Number of HSP's successfully gapped in prelim test: 4681
Number of HSP's that attempted gapping in prelim test: 878721
Number of HSP's gapped (non-prelim): 12190
length of query: 231
length of database: 8,064,228,071
effective HSP length: 138
effective length of query: 93
effective length of database: 9,121,278,045
effective search space: 848278858185
effective search space used: 848278858185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 74 (33.1 bits)