BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026902
(231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|O22922|RU2B1_ARATH U2 small nuclear ribonucleoprotein B'' OS=Arabidopsis thaliana
GN=U2B'' PE=1 SV=1
Length = 232
Score = 371 bits (952), Expect = e-102, Method: Compositional matrix adjust.
Identities = 175/234 (74%), Positives = 204/234 (87%), Gaps = 5/234 (2%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+T DIPPNQ+IYI+NLNE+IKKEELKRSLYCLFSQ+GRI DVVALKTPKLRGQAWV FS
Sbjct: 1 MLTADIPPNQSIYIQNLNERIKKEELKRSLYCLFSQFGRILDVVALKTPKLRGQAWVTFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAA +AVRQMQNFPFYDKPMR+QYAK+KSDC+AK +G+FVP++KK+KQEEK ERKR
Sbjct: 61 EVTAAGHAVRQMQNFPFYDKPMRLQYAKAKSDCLAKAEGTFVPKDKKRKQEEKVERKR-- 118
Query: 121 EEAQQSSMANG---TGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLF 177
E++Q+ + ANG G +N G A + QET PNNILFIQNLPHETTS ML++LF
Sbjct: 119 EDSQRPNTANGPSANGPSANNGVPAPSFQPSGQETMPPNNILFIQNLPHETTSMMLQLLF 178
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+QYPGFKE+RMI+AKPGIAFVE+EDDVQ+S+AMQ LQGFKITPQNPM I+FAKK
Sbjct: 179 EQYPGFKEIRMIDAKPGIAFVEYEDDVQASIAMQPLQGFKITPQNPMVISFAKK 232
>sp|Q8H1S6|RU2B2_ARATH U2 small nuclear ribonucleoprotein B'' 2 OS=Arabidopsis thaliana
GN=At1g06960 PE=1 SV=1
Length = 229
Score = 358 bits (919), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 182/231 (78%), Positives = 201/231 (87%), Gaps = 2/231 (0%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M+T DIPPNQ+IYIK++NEKIKKEELKRSLYCLFSQ+GR+ DVVALKTPKLRGQAWVVF+
Sbjct: 1 MLTADIPPNQSIYIKHINEKIKKEELKRSLYCLFSQFGRLLDVVALKTPKLRGQAWVVFT 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSD V K +GSFVP+EKK KQEEK ERKR A
Sbjct: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDYVTKAEGSFVPKEKKMKQEEKVERKRHA 120
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
EE QQ SM NG Q NG F+ + Q+T PNNILFI NLP ET S ML++LF+QY
Sbjct: 121 EETQQPSMPNGATTQ-NGMPVPPFQPSG-QDTMPPNNILFIHNLPIETNSMMLQLLFEQY 178
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
PGFKE+RMIEAKPGIAFVE+EDDVQSSMAMQALQGFKITPQNPM ++FAKK
Sbjct: 179 PGFKEIRMIEAKPGIAFVEYEDDVQSSMAMQALQGFKITPQNPMVVSFAKK 229
>sp|B8AM21|RU2B_ORYSI U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
indica GN=OsI_11177 PE=3 SV=1
Length = 232
Score = 329 bits (844), Expect = 8e-90, Method: Compositional matrix adjust.
Identities = 175/234 (74%), Positives = 198/234 (84%), Gaps = 5/234 (2%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQT+Y++NLNEK+KKEELKRSLY L SQYGRI DVVALKTPKLRGQAWVVFS
Sbjct: 1 MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEK-AERKRR 119
E+TAA+NA R +Q F FY K MR+QYAK+KSDC+A EDGS P+EK+KKQEEK AE+KRR
Sbjct: 61 EITAATNAFRGLQEFDFYGKRMRVQYAKTKSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120
Query: 120 AEEAQQSSMANGTGAQSNG-GTAASFRNANTQE-TAAPNNILFIQNLPHETTSSMLEMLF 177
AEEAQQS AQSNG G AS +QE A PNNILFIQNLP ETTS ML++LF
Sbjct: 121 AEEAQQS--GPNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILF 178
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QQYPGF+EVRMIEAKPGIAFVE+EDD QS +AMQALQGFKITP NPMAI++AKK
Sbjct: 179 QQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
>sp|Q10MR0|RU2B_ORYSJ U2 small nuclear ribonucleoprotein B'' OS=Oryza sativa subsp.
japonica GN=Os03g0298800 PE=2 SV=1
Length = 232
Score = 328 bits (842), Expect = 1e-89, Method: Compositional matrix adjust.
Identities = 174/234 (74%), Positives = 198/234 (84%), Gaps = 5/234 (2%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
M++GDIPPNQT+Y++NLNEK+KKEELKRSLY L SQYGRI DVVALKTPKLRGQAWVVFS
Sbjct: 1 MLSGDIPPNQTVYLRNLNEKVKKEELKRSLYALCSQYGRILDVVALKTPKLRGQAWVVFS 60
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEK-AERKRR 119
E+TAA+NA R +Q F FY K MR+QYAK++SDC+A EDGS P+EK+KKQEEK AE+KRR
Sbjct: 61 EITAATNAFRGLQEFDFYGKRMRVQYAKTRSDCLATEDGSTAPKEKRKKQEEKAAEKKRR 120
Query: 120 AEEAQQSSMANGTGAQSNG-GTAASFRNANTQE-TAAPNNILFIQNLPHETTSSMLEMLF 177
AEEAQQS AQSNG G AS +QE A PNNILFIQNLP ETTS ML++LF
Sbjct: 121 AEEAQQS--GPNAAAQSNGTGYQASRLGKTSQEPPAPPNNILFIQNLPAETTSMMLQILF 178
Query: 178 QQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
QQYPGF+EVRMIEAKPGIAFVE+EDD QS +AMQALQGFKITP NPMAI++AKK
Sbjct: 179 QQYPGFREVRMIEAKPGIAFVEYEDDSQSMVAMQALQGFKITPYNPMAISYAKK 232
>sp|Q0DKM4|RU1A_ORYSJ U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp.
japonica GN=Os05g0154800 PE=3 SV=1
Length = 253
Score = 275 bits (703), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 171/235 (72%), Gaps = 11/235 (4%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPN TIYI NLNEKIK EELK+SL +FSQ+G+I DV+A KT K +GQAWVVF +V +A+
Sbjct: 20 PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS 126
A++ MQ+FPF++KPMRIQYAK+KSD +AK DG+FVPRE++K+ +EK E+K++ E+
Sbjct: 80 EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139
Query: 127 SMANGTGAQSNGGTA----------ASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
S G G + G A + E PNNILF+QNLPHETT ML+ML
Sbjct: 140 SQV-GLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQML 198
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F QYPGFKEVRM+EAKPGIAFVE+ D+ Q++ AM LQGFKIT N M I++AKK
Sbjct: 199 FCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253
>sp|A2Y0J7|RU1A_ORYSI U1 small nuclear ribonucleoprotein A OS=Oryza sativa subsp. indica
GN=OsI_18512 PE=3 SV=1
Length = 253
Score = 275 bits (703), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 135/235 (57%), Positives = 171/235 (72%), Gaps = 11/235 (4%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAAS 66
PPN TIYI NLNEKIK EELK+SL +FSQ+G+I DV+A KT K +GQAWVVF +V +A+
Sbjct: 20 PPNVTIYINNLNEKIKLEELKKSLRAVFSQFGKILDVLAFKTLKHKGQAWVVFEDVASAT 79
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS 126
A++ MQ+FPF++KPMRIQYAK+KSD +AK DG+FVPRE++K+ +EK E+K++ E+
Sbjct: 80 EALKSMQDFPFHNKPMRIQYAKTKSDIIAKADGTFVPRERRKRNDEKPEKKQKREQHHDV 139
Query: 127 SMANGTGAQSNGGTA----------ASFRNANTQETAAPNNILFIQNLPHETTSSMLEML 176
S G G + G A + E PNNILF+QNLPHETT ML+ML
Sbjct: 140 SQV-GLGVNAYPGVYGAPPLSQLPFAGAQKVMMPEIIVPNNILFVQNLPHETTPMMLQML 198
Query: 177 FQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
F QYPGFKEVRM+EAKPGIAFVE+ D+ Q++ AM LQGFKIT N M I++AKK
Sbjct: 199 FCQYPGFKEVRMVEAKPGIAFVEYGDEGQATAAMNHLQGFKITKDNQMLISYAKK 253
>sp|Q39244|RU1A_ARATH U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A
PE=1 SV=1
Length = 250
Score = 259 bits (661), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 137/239 (57%), Positives = 170/239 (71%), Gaps = 13/239 (5%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ PNQTIYI NLNEK+K +ELK+SL +FSQ+G+I +++A KT K +GQAWVVF +
Sbjct: 13 EVSPNQTIYINNLNEKVKLDELKKSLNAVFSQFGKILEILAFKTFKHKGQAWVVFDNTES 72
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
AS A+ +M NFPFYDK MRIQYAK+KSD VAK DG+FVPREK+K+ EEK K++ ++
Sbjct: 73 ASTAIAKMNNFPFYDKEMRIQYAKTKSDVVAKADGTFVPREKRKRHEEKGGGKKKKDQHH 132
Query: 125 QSS---MANGTGAQSNGGTAASFRNA--------NTQET-AAPNNILFIQNLPHETTSSM 172
S+ M + G A N E A PNNILF+QNLPHETT +
Sbjct: 133 DSTQMGMPMNSAYPGVYGAAPPLSQVPYPGGMKPNMPEAPAPPNNILFVQNLPHETTPMV 192
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
L+MLF QY GFKEVRMIEAKPGIAFVEF D++QS++AMQ LQGFKI QN M IT+AKK
Sbjct: 193 LQMLFCQYQGFKEVRMIEAKPGIAFVEFADEMQSTVAMQGLQGFKIQ-QNQMLITYAKK 250
>sp|Q9CQI7|RU2B_MOUSE U2 small nuclear ribonucleoprotein B'' OS=Mus musculus GN=Snrpb2
PE=2 SV=1
Length = 225
Score = 237 bits (604), Expect = 6e-62, Method: Compositional matrix adjust.
Identities = 123/236 (52%), Positives = 160/236 (67%), Gaps = 21/236 (8%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F A+++++ E+ +
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTF------------ADKEKKKEKKK 109
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAA---------PNNILFIQNLPHETTSSMLEM 175
+M A + + ANTQ TAA PN ILF+ NLP ET ML M
Sbjct: 110 AKTMEQAAAAANKKPGQGTPNAANTQGTAAPNPQVPDYPPNYILFLNNLPEETNEMMLSM 169
Query: 176 LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
LF Q+PGFKEVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 170 LFNQFPGFKEVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>sp|P08579|RU2B_HUMAN U2 small nuclear ribonucleoprotein B'' OS=Homo sapiens GN=SNRPB2
PE=1 SV=1
Length = 225
Score = 232 bits (592), Expect = 1e-60, Method: Compositional matrix adjust.
Identities = 120/227 (52%), Positives = 158/227 (69%), Gaps = 3/227 (1%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
DI PN TIYI N+N+KIKKEELKRSLY LFSQ+G + D+VALKT K+RGQA+V+F E+ +
Sbjct: 2 DIRPNHTIYINNMNDKIKKEELKRSLYALFSQFGHVVDIVALKTMKMRGQAFVIFKELGS 61
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
++NA+RQ+Q FPFY KPMRIQYAK+ SD ++K G+F +EKKK++++ ++ A
Sbjct: 62 STNALRQLQGFPFYGKPMRIQYAKTDSDIISKMRGTFADKEKKKEKKKAKTVEQTATTTN 121
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
+ G G ++ T + PN ILF+ NLP ET ML MLF Q+PGFK
Sbjct: 122 KKP---GQGTPNSANTQGNSTPNPQVPDYPPNYILFLNNLPEETNEMMLSMLFNQFPGFK 178
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
EVR++ + IAFVEFE+D Q+ A ALQGFKITP + M IT+AKK
Sbjct: 179 EVRLVPGRHDIAFVEFENDGQAGAARDALQGFKITPSHAMKITYAKK 225
>sp|Q54J05|RU2B_DICDI U2 small nuclear ribonucleoprotein B'' OS=Dictyostelium discoideum
GN=snrpb2 PE=3 SV=1
Length = 241
Score = 214 bits (545), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 105/237 (44%), Positives = 157/237 (66%), Gaps = 12/237 (5%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62
+ DIPPNQT+Y+ NL EKI K++L L LFS+YG I ++V K+ K+RGQA++VF ++
Sbjct: 5 SADIPPNQTLYVNNLYEKISKKKLIEQLLLLFSKYGPILEIVGSKSLKMRGQAFIVFKDI 64
Query: 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122
T+ASNA+R+M F F D+PM+IQY KSKSD V+K DG+++ EKK+++EE ++ ++
Sbjct: 65 TSASNALREMNGFNFLDRPMKIQYCKSKSDAVSKLDGTYM--EKKREREENDKKGSNKKQ 122
Query: 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAA----------PNNILFIQNLPHETTSSM 172
++S+ + G ++ + + PN LF++NLP + S M
Sbjct: 123 DRKSTGQQQQQQKRPGAPTSTTSTTSPTTSNGTVSLQPRDDPPNKTLFVENLPDKCDSMM 182
Query: 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229
L MLF Q+ GFKEV M+E+K GIAF+EFED+++S AM LQ FK+TP+ PM ++FA
Sbjct: 183 LSMLFSQFQGFKEVHMVESKKGIAFIEFEDEIKSGFAMTNLQHFKVTPEKPMVVSFA 239
>sp|P43332|SNRPA_DROME U1 small nuclear ribonucleoprotein A OS=Drosophila melanogaster
GN=snf PE=1 SV=1
Length = 216
Score = 211 bits (538), Expect = 3e-54, Method: Compositional matrix adjust.
Identities = 121/224 (54%), Positives = 154/224 (68%), Gaps = 12/224 (5%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PNQTIYI NLNEKIKKEELK+SLY +FSQ+G+I D+VALKT K+RGQA+V+F E+ +ASN
Sbjct: 5 PNQTIYINNLNEKIKKEELKKSLYAIFSQFGQILDIVALKTLKMRGQAFVIFKEIGSASN 64
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPM+I Y+KS SD VAK G+F +++ K+ + + +E +
Sbjct: 65 ALRTMQGFPFYDKPMQIAYSKSDSDIVAKIKGTF---KERPKKVKPPKPAPGTDEKKDKK 121
Query: 128 MANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVR 187
+ S N N Q PN ILF+ NLP ET ML MLF Q+PGFKEVR
Sbjct: 122 KKPSSAENS---------NPNAQTEQPPNQILFLTNLPEETNEMMLSMLFNQFPGFKEVR 172
Query: 188 MIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
++ + IAFVEF ++QS+ A +ALQGFKITP + M ITFAKK
Sbjct: 173 LVPNRHDIAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 216
>sp|O74968|RU1A_SCHPO U1 small nuclear ribonucleoprotein usp102 OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=usp102 PE=1 SV=1
Length = 249
Score = 160 bits (404), Expect = 8e-39, Method: Compositional matrix adjust.
Identities = 84/231 (36%), Positives = 135/231 (58%), Gaps = 14/231 (6%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
P++T+YI+N+ EKI+ LKR L LF YG++ DV A KT ++RGQA+VVF + AS
Sbjct: 24 PSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLENASR 83
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A++ +Q +P Y KPM IQY+KSKSD + + + P E + + K +RK R E +++S
Sbjct: 84 ALKDLQGYPLYGKPMMIQYSKSKSDIIVQRES---PEEIETR---KKDRKNRREMLKRTS 137
Query: 128 MANGTGAQSNGGTAASFRNANTQETAA-------PNNILFIQNLPHETTSSMLEMLFQQY 180
+ RN + + PN +L +QN+P E + +L +F+ +
Sbjct: 138 ALQPAAPKPTHKKPVPKRNVGAERKSTINEDLLPPNKVLLLQNIPQEVNADVLTQIFEAF 197
Query: 181 PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
GF+EVRM+ + GIAFVE++ D ++++A G ++ N + +TFA+K
Sbjct: 198 SGFQEVRMVPGRRGIAFVEYDSDREATVAKNGTTGMSLS-GNQIKVTFARK 247
Score = 34.7 bits (78), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 49/86 (56%), Gaps = 7/86 (8%)
Query: 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPG-FKEVRMIEAKP-----GIAFVEFEDDV 204
++ P+ L+I+N+ + +ML+ + + G + +V ++A+ G AFV F++
Sbjct: 20 DSQTPSETLYIRNIEEKIRLTMLKRILEHLFGSYGKVIDVQARKTLRMRGQAFVVFDNLE 79
Query: 205 QSSMAMQALQGFKITPQNPMAITFAK 230
+S A++ LQG+ + + PM I ++K
Sbjct: 80 NASRALKDLQGYPLYGK-PMMIQYSK 104
>sp|Q06AA4|SNRPA_PIG U1 small nuclear ribonucleoprotein A OS=Sus scrofa GN=SNRPA PE=2
SV=1
Length = 282
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 98/127 (77%), Gaps = 5/127 (3%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+++ RK +++E S
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREK-----RKPKSQETPASK 122
Query: 128 MANGTGA 134
A GA
Sbjct: 123 KAVQGGA 129
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>sp|Q2KIR1|SNRPA_BOVIN U1 small nuclear ribonucleoprotein A OS=Bos taurus GN=SNRPA PE=2
SV=1
Length = 282
Score = 152 bits (384), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 70/123 (56%), Positives = 98/123 (79%), Gaps = 1/123 (0%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQS 126
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+ K++ K++ A++A Q
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPAAKKAVQG 127
Query: 127 SMA 129
A
Sbjct: 128 GAA 130
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>sp|P09012|SNRPA_HUMAN U1 small nuclear ribonucleoprotein A OS=Homo sapiens GN=SNRPA PE=1
SV=3
Length = 282
Score = 151 bits (381), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 71/128 (55%), Positives = 99/128 (77%), Gaps = 6/128 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ ++ K+RGQA+V+F EV++A+N
Sbjct: 8 PNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATN 67
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSS 127
A+R MQ FPFYDKPMRIQYAK+ SD +AK G+FV R++K+++ RK +++E +
Sbjct: 68 ALRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTFVERDRKREK-----RKPKSQETPATK 122
Query: 128 MA-NGTGA 134
A G GA
Sbjct: 123 KAVQGGGA 130
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQNNAMKISFAKK 282
>sp|Q62189|SNRPA_MOUSE U1 small nuclear ribonucleoprotein A OS=Mus musculus GN=Snrpa PE=2
SV=3
Length = 287
Score = 149 bits (376), Expect = 2e-35, Method: Compositional matrix adjust.
Identities = 69/122 (56%), Positives = 96/122 (78%), Gaps = 1/122 (0%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ + K+RGQA+V+F EVT+A+NA
Sbjct: 15 NHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRIMKMRGQAFVIFKEVTSATNA 74
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK-KQEEKAERKRRAEEAQQSS 127
+R MQ FPFYDKPMRIQYAK+ SD +AK G++V R++K+ K++ K++ A++A Q
Sbjct: 75 LRSMQGFPFYDKPMRIQYAKTDSDIIAKMKGTYVERDRKREKRKPKSQETPAAKKAVQGG 134
Query: 128 MA 129
A
Sbjct: 135 AA 136
Score = 99.8 bits (247), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 47/77 (61%), Positives = 58/77 (75%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ALQ
Sbjct: 211 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARDALQ 270
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 271 GFKITQNNAMKISFAKK 287
>sp|P45429|SNRPA_XENLA U1 small nuclear ribonucleoprotein A OS=Xenopus laevis GN=snrpa
PE=2 SV=1
Length = 282
Score = 148 bits (374), Expect = 3e-35, Method: Compositional matrix adjust.
Identities = 63/111 (56%), Positives = 91/111 (81%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
++ PN TIYI NLNEKIKK+ELK+SLY +FSQ+G+I D++ + K+RGQA+V+F E ++
Sbjct: 5 EVRPNNTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRNLKMRGQAFVIFKETSS 64
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAE 115
A+NA+R MQ FPFYDKPMRIQY+K+ SD +AK G+FV R++K++++ K +
Sbjct: 65 ATNALRSMQGFPFYDKPMRIQYSKTDSDIIAKMKGTFVERDRKRQEKRKVK 115
Score = 99.0 bits (245), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/77 (59%), Positives = 59/77 (76%)
Query: 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214
PN+ILF+ NLP ET ML MLF Q+PGFKEVR++ + IAFVEF+++VQ+ A ++LQ
Sbjct: 206 PNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLVPGRHDIAFVEFDNEVQAGAARESLQ 265
Query: 215 GFKITPQNPMAITFAKK 231
GFKIT N M I+FAKK
Sbjct: 266 GFKITQSNSMKISFAKK 282
>sp|Q7LL14|RU2B_SCHPO Probable U2 small nuclear ribonucleoprotein B''
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=msl1 PE=1 SV=1
Length = 111
Score = 103 bits (257), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 46/87 (52%), Positives = 66/87 (75%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
T+Y+ NLN+KI K +L+ +LY LFS YG + D+VALKTPK+RGQA VVF + +AA+ A+
Sbjct: 4 NTLYVNNLNDKINKNDLRTALYMLFSTYGTVVDIVALKTPKMRGQAHVVFFDPSAAAIAM 63
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAK 96
+ ++NF F+ K M+IQYA SKS + +
Sbjct: 64 KALKNFIFFGKEMKIQYAHSKSKIIER 90
>sp|P40567|MSL1_YEAST U2 small nuclear ribonucleoprotein B'' OS=Saccharomyces cerevisiae
(strain ATCC 204508 / S288c) GN=MSL1 PE=1 SV=1
Length = 111
Score = 57.0 bits (136), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/84 (30%), Positives = 51/84 (60%), Gaps = 1/84 (1%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
T+Y+ LNEKI + L+ +L+ LF+ +G + V++ K RGQA++ + AS A
Sbjct: 29 TLYVSQLNEKINMQRLRVNLFLLFATFGEVLK-VSMNFKKQRGQAFITMRTIDQASLAQI 87
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCV 94
+ F+ KP++++++KS++ +
Sbjct: 88 SLNGERFFGKPLKVEFSKSETKTL 111
>sp|P59708|PM14_MOUSE Pre-mRNA branch site protein p14 OS=Mus musculus GN=Sf3b14 PE=2
SV=1
Length = 125
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y + + +F + KKK+E+
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYNA--------NRAFQKMDTKKKEEQ 109
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKIT 219
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNVC 83
>sp|Q9Y3B4|PM14_HUMAN Pre-mRNA branch site protein p14 OS=Homo sapiens GN=SF3B14 PE=1
SV=1
Length = 125
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 33/109 (30%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YI+NL KI EE+ Y +F +YG I + TP+ RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIRNLPYKITAEEM----YDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y + + +F + KKK+E+
Sbjct: 69 DAKNACDHLSGFNVCNRYLVVLYYNA--------NRAFQKMDTKKKEEQ 109
Score = 42.0 bits (97), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 40/77 (51%), Gaps = 2/77 (2%)
Query: 145 RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFED 202
+ AN + N IL+I+NLP++ T+ + +F +Y +++R+ G A+V +ED
Sbjct: 7 KRANIRLPPEVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYED 66
Query: 203 DVQSSMAMQALQGFKIT 219
+ A L GF +
Sbjct: 67 IFDAKNACDHLSGFNVC 83
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 51/235 (21%), Positives = 102/235 (43%), Gaps = 53/235 (22%)
Query: 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFS 60
+G +P +Y+KNL ++I +ELK++ F +YG I V +K + R +V F
Sbjct: 232 SGAVPSFTNVYVKNLPKEITDDELKKT----FGKYGDISSAVVMKDQSGNSRSFGFVNFV 287
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRA 120
AA+ AV +M + + + A+ KSD RE++ +++ + ER R
Sbjct: 288 SPEAAAVAVEKMNGISLGEDVLYVGRAQKKSD-----------REEELRRKFEQERISRF 336
Query: 121 EEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQY 180
E+ Q S+ L+++NL L+ +F +Y
Sbjct: 337 EKLQGSN-------------------------------LYLKNLDDSVNDEKLKEMFSEY 365
Query: 181 PGFKEVRMIEAKPGIA----FVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+++ G++ FV + + ++ +AM+ + G K+ + P+ + A++
Sbjct: 366 GNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAMKEMNG-KMIGRKPLYVALAQR 419
Score = 36.6 bits (83), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 44/83 (53%), Gaps = 6/83 (7%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKL-RGQAWVVFSEVTAASNAV 69
+Y+KNL++ + E+LK +FS+YG + V + + L RG +V +S A A+
Sbjct: 344 LYLKNLDDSVNDEKLKE----MFSEYGNVTSCKVMMNSQGLSRGFGFVAYSNPEEALLAM 399
Query: 70 RQMQNFPFYDKPMRIQYAKSKSD 92
++M KP+ + A+ K +
Sbjct: 400 KEMNGKMIGRKPLYVALAQRKEE 422
>sp|Q9FMP4|PM14_ARATH Pre-mRNA branch site p14-like protein OS=Arabidopsis thaliana
GN=At5g12190 PE=2 SV=1
Length = 124
Score = 52.0 bits (123), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/91 (28%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 140 TAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAF 197
T S R +NT+ N +L+++NLP TS + +F +Y +++R+ +A G AF
Sbjct: 2 TTISLRKSNTRLPPEVNRVLYVRNLPFNITSEEMYDIFGKYGAIRQIRIGCDKATKGTAF 61
Query: 198 VEFEDDVQSSMAMQALQGFKITPQNPMAITF 228
V +ED + A+ L GF + + + + +
Sbjct: 62 VVYEDIYDAKNAVDHLSGFNVANRYLIVLYY 92
Score = 42.4 bits (98), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 43/83 (51%), Gaps = 6/83 (7%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL I EE+ Y +F +YG I + +G A+VV+ ++
Sbjct: 13 LPPEVNRVLYVRNLPFNITSEEM----YDIFGKYGAIRQIRIGCDKATKGTAFVVYEDIY 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQY 86
A NAV + F ++ + + Y
Sbjct: 69 DAKNAVDHLSGFNVANRYLIVLY 91
>sp|Q8JZV4|RBM41_MOUSE RNA-binding protein 41 OS=Mus musculus GN=Rbm41 PE=2 SV=1
Length = 413
Score = 50.4 bits (119), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/95 (30%), Positives = 52/95 (54%), Gaps = 1/95 (1%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASN 67
PN+ +Y+KNL+ ++K+ +L SL+ F + + T ++RGQA++ F A
Sbjct: 307 PNKVLYLKNLSPRVKERDLI-SLFARFQEKKGPPIQFRMMTGRMRGQAFLTFPNKDIAWQ 365
Query: 68 AVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFV 102
A+ Q+ + Y K + I++AKSK A + S +
Sbjct: 366 ALHQINGYKLYGKILVIEFAKSKKQQSAVQRSSLI 400
>sp|Q9VRV7|PM14_DROME Pre-mRNA branch site p14-like protein OS=Drosophila melanogaster
GN=CG13298 PE=2 SV=1
Length = 121
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/109 (29%), Positives = 57/109 (52%), Gaps = 14/109 (12%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +Y++NL KI +E+ Y +F ++G I + TP+ RG A+VV+ ++
Sbjct: 9 LPPEVNRLLYVRNLPYKITSDEM----YDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIF 64
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEE 112
A NA + F ++ + + Y +S + +F + KKQEE
Sbjct: 65 DAKNACDHLSGFNVCNRYLVVLYYQS--------NKAFKRVDMDKKQEE 105
Score = 41.2 bits (95), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 19/66 (28%), Positives = 36/66 (54%), Gaps = 2/66 (3%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N +L+++NLP++ TS + +F ++ +++R+ G AFV +ED + A L
Sbjct: 14 NRLLYVRNLPYKITSDEMYDIFGKFGAIRQIRVGNTPETRGTAFVVYEDIFDAKNACDHL 73
Query: 214 QGFKIT 219
GF +
Sbjct: 74 SGFNVC 79
>sp|O59670|PM14_SCHPO Pre-mRNA branch site p14-like protein OS=Schizosaccharomyces
pombe (strain 972 / ATCC 24843) GN=SPBC29A3.07c PE=3
SV=2
Length = 115
Score = 48.5 bits (114), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 30/91 (32%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N ++IKNL+ KI EE+ Y LF +YG + + T + RG A+VV+ V A A
Sbjct: 11 NSILFIKNLSFKITAEEM----YDLFGRYGPVRQIRLGNTVQTRGTAFVVYENVQDARRA 66
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVAKEDG 99
++ + F D+ + + Y + AK DG
Sbjct: 67 CEKLSGYNFMDRYLVVHYYNPER---AKVDG 94
Score = 35.4 bits (80), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 20/64 (31%), Positives = 38/64 (59%), Gaps = 4/64 (6%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM---IEAKPGIAFVEFEDDVQSSMAMQA 212
N+ILFI+NL + T+ + LF +Y +++R+ ++ + G AFV +E+ + A +
Sbjct: 11 NSILFIKNLSFKITAEEMYDLFGRYGPVRQIRLGNTVQTR-GTAFVVYENVQDARRACEK 69
Query: 213 LQGF 216
L G+
Sbjct: 70 LSGY 73
>sp|Q6ZI17|OML2_ORYSJ Protein MEI2-like 2 OS=Oryza sativa subsp. japonica GN=ML2 PE=2
SV=1
Length = 848
Score = 47.4 bits (111), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 49/91 (53%), Gaps = 8/91 (8%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP-KLRGQAWVVFSEVTAAS 66
P++T++++N+N + EL+ LF QYG D+ L T K RG + + ++ AA
Sbjct: 195 PSRTLFVRNINSNVDDTELR----SLFEQYG---DIRTLYTATKHRGFVMISYFDIRAAR 247
Query: 67 NAVRQMQNFPFYDKPMRIQYAKSKSDCVAKE 97
A+R +QN P + + I ++ K + K+
Sbjct: 248 GAMRGLQNKPLRRRKLDIHFSIPKENPSDKD 278
>sp|Q9LEB3|RBP47_NICPL Polyadenylate-binding protein RBP47 OS=Nicotiana plumbaginifolia
GN=RBP47 PE=1 SV=1
Length = 428
Score = 47.0 bits (110), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/103 (25%), Positives = 59/103 (57%), Gaps = 13/103 (12%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N TI++ L+ ++ EEL++S F+Q+G +VV++K P +G +V FS+ ++A A
Sbjct: 294 NTTIFVGGLDSEVTDEELRQS----FNQFG---EVVSVKIPAGKGCGFVQFSDRSSAQEA 346
Query: 69 VRQMQNFPFYDKPMRIQYAKS------KSDCVAKEDGSFVPRE 105
++++ + +R+ + +S ++D ++ +G + R+
Sbjct: 347 IQKLSGAIIGKQAVRLSWGRSPANKQMRTDSGSQWNGGYNGRQ 389
Score = 40.0 bits (92), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 47/211 (22%), Positives = 77/211 (36%), Gaps = 30/211 (14%)
Query: 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70
+I++ +L + L+ + + VV T +G +V F + + S A+
Sbjct: 178 SIFVGDLASDVTDTMLRDTFASRYPSLKGAKVVVDANTGHSKGYGFVRFGDESERSRAMT 237
Query: 71 QMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMAN 130
+M + MRI A K K E+ + + S+ A
Sbjct: 238 EMNGVYCSSRAMRIGVATPK---------------KPSAHEQYSSQAVILSGGYASNGAA 282
Query: 131 GTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIE 190
G+QS+G ++ N +F+ L E T L F Q+ V+ I
Sbjct: 283 THGSQSDGDSS--------------NTTIFVGGLDSEVTDEELRQSFNQFGEVVSVK-IP 327
Query: 191 AKPGIAFVEFEDDVQSSMAMQALQGFKITPQ 221
A G FV+F D + A+Q L G I Q
Sbjct: 328 AGKGCGFVQFSDRSSAQEAIQKLSGAIIGKQ 358
>sp|Q5R6C7|RBM40_PONAB RNA-binding protein 40 OS=Pongo abelii GN=RNPC3 PE=2 SV=1
Length = 517
Score = 46.6 bits (109), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 61/106 (57%), Gaps = 11/106 (10%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSL--YCLFSQYGR--IFDVVALKTPKLRGQAWVVFSEVT 63
PN IY+KNL + +++++LK Y FS R +FD+ +K +++GQA+V
Sbjct: 418 PNCRIYVKNLAKHVEEKDLKYIFGRYVDFSSETRRIMFDIRLMKEGRMKGQAFVGLPNEK 477
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
AA+ A+++ + + KPM +Q+A+S K+D P+E K+K
Sbjct: 478 AAAKALKEANGYVLFGKPMVVQFARSAR---PKQD----PKEGKRK 516
>sp|Q6DJI9|ZCRB1_XENLA Zinc finger CCHC-type and RNA-binding motif-containing protein 1
OS=Xenopus laevis GN=zcrb1 PE=2 SV=1
Length = 218
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 47/91 (51%), Gaps = 7/91 (7%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWV 57
M G P T+Y+ NL + +L R +FS+YG++ V LK + K +G ++V
Sbjct: 1 MSGGLAPSKSTVYVSNLPFSLTNNDLHR----IFSKYGKVVKVTILKDKDSRKSKGVSFV 56
Query: 58 VFSEVTAASNAVRQMQNFPFYDKPMRIQYAK 88
+F + +A N VR + N + + ++ AK
Sbjct: 57 LFLDKESAQNCVRGLNNKQLFGRAIKASIAK 87
>sp|P92964|RSP31_ARATH Arginine/serine-rich-splicing factor RSP31 OS=Arabidopsis thaliana
GN=RSP31 PE=1 SV=2
Length = 264
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 49/210 (23%), Positives = 84/210 (40%), Gaps = 60/210 (28%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
+ +++ N + ++ +L+R LF +YGR+ D V +K+ G A+V F + A +A+
Sbjct: 2 RPVFVGNFEYETRQSDLER----LFDKYGRV-DRVDMKS----GYAFVYFEDERDAEDAI 52
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMA 129
R++ NFPF E++R + E A
Sbjct: 53 RKLDNFPF-----------------------------------GYEKRRLSVE-----WA 72
Query: 130 NGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL-PHETTSSMLEMLFQQYPGFKEVRM 188
G + G +A P LF+ N P T +E F+ Y VR+
Sbjct: 73 KGERGRPRG-------DAKAPSNLKPTKTLFVINFDPIRTKEHDIEKHFEPYGKVTNVRI 125
Query: 189 IEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
+ +FV+FE ++ A++A Q KI
Sbjct: 126 ---RRNFSFVQFETQEDATKALEATQRSKI 152
>sp|Q7JGR2|PABP5_MACMU Polyadenylate-binding protein 5 OS=Macaca mulatta GN=PABPC5 PE=3
SV=1
Length = 382
Score = 46.2 bits (108), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKLRGQAWVVFSEVTAA 65
PP IYIKNL+E I E+LK FS +G I V ++ + +G V FS A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEE----FSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEA 354
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC 93
+ AV +M KP+ + +++ C
Sbjct: 355 TKAVDEMNGRVVGSKPLHVTLGQARRRC 382
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKLRGQAWVVFSEVTAA 65
PP IYIKNL+E I E+LK FS +G I V ++ + +G V FS A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEE----FSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEA 354
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC 93
+ AV +M KP+ + +++ C
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLGQARRRC 382
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKLRGQAWVVFSEVTAA 65
PP IYIKNL+E I E+LK FS +G I V ++ + +G V FS A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEE----FSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEA 354
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC 93
+ AV +M KP+ + +++ C
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLGQARRRC 382
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKLRGQAWVVFSEVTAA 65
PP IYIKNL+E I E+LK FS +G I V ++ + +G V FS A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEE----FSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEA 354
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC 93
+ AV +M KP+ + +++ C
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLGQARRRC 382
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKLRGQAWVVFSEVTAA 65
PP IYIKNL+E I E+LK FS +G I V ++ + +G V FS A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEE----FSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEA 354
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC 93
+ AV +M KP+ + +++ C
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLGQARRRC 382
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 5/88 (5%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKLRGQAWVVFSEVTAA 65
PP IYIKNL+E I E+LK FS +G I V ++ + +G V FS A
Sbjct: 299 PPGVPIYIKNLDETINDEKLKEE----FSSFGSISRAKVMMEVGQGKGFGVVCFSSFEEA 354
Query: 66 SNAVRQMQNFPFYDKPMRIQYAKSKSDC 93
+ AV +M KP+ + +++ C
Sbjct: 355 TKAVDEMNGRIVGSKPLHVTLGQARRRC 382
>sp|Q18409|RSP6_CAEEL Probable splicing factor, arginine/serine-rich 6 OS=Caenorhabditis
elegans GN=rsp-6 PE=3 SV=1
Length = 179
Score = 45.1 bits (105), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 20/61 (32%), Positives = 36/61 (59%)
Query: 159 LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
+++ LP + TS LE +F ++ ++V + PG AFVE++D + A++AL G +I
Sbjct: 5 VYVGGLPSDATSQELEEIFDRFGRIRKVWVARRPPGFAFVEYDDVRDAEDAVRALDGSRI 64
Query: 219 T 219
Sbjct: 65 C 65
>sp|O60506|HNRPQ_HUMAN Heterogeneous nuclear ribonucleoprotein Q OS=Homo sapiens
GN=SYNCRIP PE=1 SV=2
Length = 623
Score = 45.1 bits (105), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 51/251 (20%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQ--EE------------------ 112
I+ K C++ + +P+ K K+Q EE
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPD 280
Query: 113 -----------KAERKRRAEEAQQSSMANGTGAQSNGGTA--ASFRNANTQETAAPNNIL 159
+ E + A +A++ M+ N GT A E A +L
Sbjct: 281 DKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVL 340
Query: 160 FIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIT 219
F++NL + T +LE F Q+ + V+ ++ AF+ F++ + AM+ + G +
Sbjct: 341 FVRNLANTVTEEILEKAFSQFGKLERVKKLKD---YAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 220 PQNPMAITFAK 230
+N + I FAK
Sbjct: 398 GEN-IEIVFAK 407
>sp|Q7TP47|HNRPQ_RAT Heterogeneous nuclear ribonucleoprotein Q OS=Rattus norvegicus
GN=Syncrip PE=2 SV=1
Length = 533
Score = 44.7 bits (104), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 51/251 (20%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 78 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 136
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQ--EE------------------ 112
I+ K C++ + +P+ K K+Q EE
Sbjct: 137 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPD 190
Query: 113 -----------KAERKRRAEEAQQSSMANGTGAQSNGGTA--ASFRNANTQETAAPNNIL 159
+ E + A +A++ M+ N GT A E A +L
Sbjct: 191 DKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVL 250
Query: 160 FIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIT 219
F++NL + T +LE F Q+ + V+ ++ AF+ F++ + AM+ + G +
Sbjct: 251 FVRNLANTVTEEILEKSFSQFGKLERVKKLKD---YAFIHFDERDGAVKAMEEMNGKDLE 307
Query: 220 PQNPMAITFAK 230
+N + I FAK
Sbjct: 308 GEN-IEIVFAK 317
>sp|Q7TMK9|HNRPQ_MOUSE Heterogeneous nuclear ribonucleoprotein Q OS=Mus musculus
GN=Syncrip PE=1 SV=2
Length = 623
Score = 44.3 bits (103), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 59/251 (23%), Positives = 100/251 (39%), Gaps = 51/251 (20%)
Query: 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKL---RGQAWVVFSEVTAASNAVRQMQNFP 76
KI ++ + L LF + G I+D+ + P RG A+V F AA AV+ N
Sbjct: 168 KIPRDLFEDELVPLFEKAGPIWDLRLMMDPLTGLNRGYAFVTFCTKEAAQEAVKLYNNH- 226
Query: 77 FYDKPMRIQYAKSKSDCVAKEDGSF----VPREKKKKQ--EE------------------ 112
I+ K C++ + +P+ K K+Q EE
Sbjct: 227 ------EIRSGKHIGVCISVANNRLFVGSIPKSKTKEQILEEFSKVTEGLTDVILYHQPD 280
Query: 113 -----------KAERKRRAEEAQQSSMANGTGAQSNGGTA--ASFRNANTQETAAPNNIL 159
+ E + A +A++ M+ N GT A E A +L
Sbjct: 281 DKKKNRGFCFLEYEDHKTAAQARRRLMSGKVKVWGNVGTVEWADPIEDPDPEVMAKVKVL 340
Query: 160 FIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIT 219
F++NL + T +LE F Q+ + V+ ++ AF+ F++ + AM+ + G +
Sbjct: 341 FVRNLANTVTEEILEKSFSQFGKLERVKKLKD---YAFIHFDERDGAVKAMEEMNGKDLE 397
Query: 220 PQNPMAITFAK 230
+N + I FAK
Sbjct: 398 GEN-IEIVFAK 407
Score = 30.8 bits (68), Expect = 8.5, Method: Compositional matrix adjust.
Identities = 20/79 (25%), Positives = 41/79 (51%), Gaps = 9/79 (11%)
Query: 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69
+ ++++NL + +E L++S FSQ+G++ + KL+ A++ F E A A+
Sbjct: 338 KVLFVRNLANTVTEEILEKS----FSQFGKL-----ERVKKLKDYAFIHFDERDGAVKAM 388
Query: 70 RQMQNFPFYDKPMRIQYAK 88
+M + + I +AK
Sbjct: 389 EEMNGKDLEGENIEIVFAK 407
>sp|Q9R0U0|SRS10_MOUSE Serine/arginine-rich splicing factor 10 OS=Mus musculus GN=Srsf10
PE=1 SV=2
Length = 262
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV---VALKTPKLRGQAWVVFSEVT 63
PPN +++++N+ + + E+L+R F +YG I DV + T + RG A+V F +V
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRRE----FGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVR 62
Query: 64 AASNAVRQMQNFPFYDKPMRIQYA 87
A +A+ + + + IQ+A
Sbjct: 63 DAEDALHNLDRKWICGRQIEIQFA 86
>sp|O75494|SRS10_HUMAN Serine/arginine-rich splicing factor 10 OS=Homo sapiens GN=SRSF10
PE=1 SV=1
Length = 262
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/84 (29%), Positives = 46/84 (54%), Gaps = 7/84 (8%)
Query: 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV---VALKTPKLRGQAWVVFSEVT 63
PPN +++++N+ + + E+L+R F +YG I DV + T + RG A+V F +V
Sbjct: 7 PPNTSLFVRNVADDTRSEDLRRE----FGRYGPIVDVYVPLDFYTRRPRGFAYVQFEDVR 62
Query: 64 AASNAVRQMQNFPFYDKPMRIQYA 87
A +A+ + + + IQ+A
Sbjct: 63 DAEDALHNLDRKWICGRQIEIQFA 86
>sp|Q9SAB3|RB45B_ARATH Polyadenylate-binding protein RBP45B OS=Arabidopsis thaliana
GN=RBP45B PE=1 SV=1
Length = 405
Score = 44.3 bits (103), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 7/92 (7%)
Query: 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFS 60
+ T + P N T+++ L+ + + LK +FSQYG I V +K P + +V FS
Sbjct: 252 VTTDNDPNNTTVFVGGLDASVTDDHLKN----VFSQYGEI---VHVKIPAGKRCGFVQFS 304
Query: 61 EVTAASNAVRQMQNFPFYDKPMRIQYAKSKSD 92
E + A A+R + +R+ + +S S+
Sbjct: 305 EKSCAEEALRMLNGVQLGGTTVRLSWGRSPSN 336
Score = 39.3 bits (90), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 45/214 (21%), Positives = 76/214 (35%), Gaps = 42/214 (19%)
Query: 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64
D P+ TI++ +L + L + + V+ T + +G +V FS+ +
Sbjct: 150 DDSPDYTIFVGDLAADVTDYILLETFRASYPSVKGAKVVIDRVTGRTKGYGFVRFSDESE 209
Query: 65 ASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ 124
A+ +M P +PMRI A SK + D +
Sbjct: 210 QIRAMTEMNGVPCSTRPMRIGPAASKKGVTGQRD------------------------SY 245
Query: 125 QSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK 184
QSS A T + N +F+ L T L+ +F QY
Sbjct: 246 QSSAA-----------------GVTTDNDPNNTTVFVGGLDASVTDDHLKNVFSQYGEIV 288
Query: 185 EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI 218
V+ I A FV+F + + A++ L G ++
Sbjct: 289 HVK-IPAGKRCGFVQFSEKSCAEEALRMLNGVQL 321
>sp|Q96LT9|RBM40_HUMAN RNA-binding protein 40 OS=Homo sapiens GN=RNPC3 PE=1 SV=1
Length = 517
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 35/106 (33%), Positives = 62/106 (58%), Gaps = 11/106 (10%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSL--YCLFS-QYGRI-FDVVALKTPKLRGQAWVVFSEVT 63
PN IY+KNL + +++++LK Y FS + RI FD+ +K +++GQA++
Sbjct: 418 PNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEK 477
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKK 109
AA+ A+++ + + KPM +Q+A+S K+D P+E K+K
Sbjct: 478 AAAKALKEANGYVLFGKPMVVQFARSAR---PKQD----PKEGKRK 516
>sp|Q8ITY4|PM14_CAEEL Pre-mRNA branch site p14-like protein OS=Caenorhabditis elegans
GN=C50D2.5 PE=3 SV=2
Length = 138
Score = 44.3 bits (103), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 46/86 (53%), Gaps = 6/86 (6%)
Query: 6 IPP--NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVT 63
+PP N+ +YIKNL KI EE +Y +F ++G + + T + RG A+VV+ ++
Sbjct: 13 LPPEVNRILYIKNLPYKITTEE----MYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIF 68
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
A A + + ++ + + Y ++
Sbjct: 69 DAKTACEHLSGYNVSNRYLVVLYYQA 94
Score = 43.1 bits (100), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/75 (25%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM--IEAKPGIAFVEFEDDVQSSMAMQAL 213
N IL+I+NLP++ T+ + +F ++ +++R+ G AFV +ED + A + L
Sbjct: 18 NRILYIKNLPYKITTEEMYEIFGKFGAVRQIRVGNTAETRGTAFVVYEDIFDAKTACEHL 77
Query: 214 QGFKITPQNPMAITF 228
G+ ++ + + + +
Sbjct: 78 SGYNVSNRYLVVLYY 92
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 43.9 bits (102), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 53/225 (23%), Positives = 89/225 (39%), Gaps = 52/225 (23%)
Query: 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP--KLRGQAWVVFSEVTAASNAV 69
+YIKN E++ E LK LFSQ+G+ V ++ P K +G +V + + A+ AV
Sbjct: 193 VYIKNFGEEVDDESLKE----LFSQFGKTLSVKVMRDPNGKSKGFGFVSYEKHEDANKAV 248
Query: 70 RQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMA 129
+M K + FV R +KK E +AE KR+ E+ +Q ++
Sbjct: 249 EEMNGKEISGKII------------------FVGR-AQKKVERQAELKRKFEQLKQERIS 289
Query: 130 NGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVR-M 188
G L+I+NL L F + + M
Sbjct: 290 RYQGVN-----------------------LYIKNLDDTIDDEKLRKEFSPFGSITSAKVM 326
Query: 189 IEA--KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231
+E G FV F +++ A+ + G +I P+ + A++
Sbjct: 327 LEDGRSKGFGFVCFSSPEEATKAVTEMNG-RIVGSKPLYVALAQR 370
>sp|Q3UZ01|RBM40_MOUSE RNA-binding protein 40 OS=Mus musculus GN=Rnpc3 PE=2 SV=2
Length = 514
Score = 43.9 bits (102), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSL--YCLFS-QYGRI-FDVVALKTPKLRGQAWVVFSEVT 63
PN IY+KNL +++++LK Y FS + RI FD+ +K +++GQA+V
Sbjct: 416 PNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEK 475
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
AA+ A+++ + + KPM +Q+A+S
Sbjct: 476 AAAKALKEANGYVLFGKPMVVQFARS 501
>sp|O60176|YG41_SCHPO Uncharacterized RNA-binding protein C23E6.01c
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=SPBC23E6.01c PE=1 SV=2
Length = 473
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 7/87 (8%)
Query: 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNA 68
N T+++ L++ + +EELK LF +G I V +K P +G +V F +A A
Sbjct: 302 NSTVFVGGLSKFVSEEELKY----LFQNFGEI---VYVKIPPGKGCGFVQFVNRQSAEIA 354
Query: 69 VRQMQNFPFYDKPMRIQYAKSKSDCVA 95
+ Q+Q +P + +R+ + ++++ A
Sbjct: 355 INQLQGYPLGNSRIRLSWGRNQNPIAA 381
>sp|Q4G055|RBM40_RAT RNA-binding protein 40 OS=Rattus norvegicus GN=Rnpc3 PE=2 SV=2
Length = 515
Score = 43.5 bits (101), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 30/86 (34%), Positives = 52/86 (60%), Gaps = 4/86 (4%)
Query: 8 PNQTIYIKNLNEKIKKEELKRSL--YCLFS-QYGRI-FDVVALKTPKLRGQAWVVFSEVT 63
PN IY+KNL +++++LK Y FS + RI FD+ +K +++GQA+V
Sbjct: 417 PNCRIYVKNLARHVQEKDLKFIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFVGLPNEK 476
Query: 64 AASNAVRQMQNFPFYDKPMRIQYAKS 89
AA+ A+++ + + KPM +Q+A+S
Sbjct: 477 AAAKALKEANGYVLFGKPMVVQFARS 502
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.128 0.358
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 79,671,076
Number of Sequences: 539616
Number of extensions: 3003030
Number of successful extensions: 21915
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 104
Number of HSP's successfully gapped in prelim test: 374
Number of HSP's that attempted gapping in prelim test: 21076
Number of HSP's gapped (non-prelim): 1019
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 59 (27.3 bits)