Query 026902
Match_columns 231
No_of_seqs 114 out of 1850
Neff 9.9
Searched_HMMs 46136
Date Fri Mar 29 14:19:40 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026902.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026902hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01659 sex-lethal sex-letha 100.0 3.5E-34 7.5E-39 235.4 20.5 162 5-230 103-273 (346)
2 TIGR01645 half-pint poly-U bin 100.0 5.9E-33 1.3E-37 239.5 19.6 170 7-230 105-282 (612)
3 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 9.1E-32 2E-36 224.5 23.0 218 7-230 87-347 (352)
4 KOG0148 Apoptosis-promoting RN 100.0 4.1E-32 8.8E-37 206.6 15.9 170 11-230 64-236 (321)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 100.0 1.8E-31 3.9E-36 222.8 20.9 159 8-230 2-169 (352)
6 TIGR01622 SF-CC1 splicing fact 100.0 2.3E-31 5E-36 229.3 21.3 171 6-230 86-264 (457)
7 KOG4206 Spliceosomal protein s 100.0 1.7E-31 3.7E-36 199.4 17.0 218 1-231 1-221 (221)
8 KOG0117 Heterogeneous nuclear 100.0 3.9E-30 8.5E-35 207.8 18.6 212 7-230 81-329 (506)
9 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 5.9E-30 1.3E-34 220.9 20.8 168 8-230 1-172 (481)
10 TIGR01649 hnRNP-L_PTB hnRNP-L/ 100.0 1.3E-29 2.9E-34 218.7 22.1 195 7-231 273-479 (481)
11 TIGR01628 PABP-1234 polyadenyl 100.0 1.6E-29 3.6E-34 222.7 20.3 178 7-231 176-363 (562)
12 TIGR01648 hnRNP-R-Q heterogene 100.0 1.6E-29 3.5E-34 217.9 19.1 212 8-230 57-305 (578)
13 TIGR01628 PABP-1234 polyadenyl 100.0 2.8E-29 6E-34 221.2 19.0 156 11-229 2-164 (562)
14 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.1E-28 4.7E-33 213.5 20.9 186 5-230 171-373 (509)
15 KOG0127 Nucleolar protein fibr 100.0 2.1E-28 4.6E-33 202.2 14.2 181 8-229 4-193 (678)
16 KOG0144 RNA-binding protein CU 100.0 1.3E-28 2.8E-33 198.4 12.3 161 7-230 32-204 (510)
17 TIGR01642 U2AF_lg U2 snRNP aux 100.0 2.4E-27 5.2E-32 206.9 20.9 186 7-229 293-499 (509)
18 KOG0127 Nucleolar protein fibr 100.0 1.1E-27 2.5E-32 197.8 16.3 216 9-229 117-375 (678)
19 KOG0145 RNA-binding protein EL 100.0 1.3E-26 2.8E-31 176.0 20.1 218 7-230 39-356 (360)
20 TIGR01622 SF-CC1 splicing fact 100.0 9.9E-27 2.2E-31 200.5 21.2 217 7-229 184-445 (457)
21 KOG0131 Splicing factor 3b, su 99.9 3.3E-27 7.2E-32 170.2 12.8 163 5-231 5-176 (203)
22 KOG0146 RNA-binding protein ET 99.9 2.7E-26 5.9E-31 174.8 13.1 219 7-230 17-363 (371)
23 KOG0109 RNA-binding protein LA 99.9 7.1E-26 1.5E-30 174.3 10.9 146 10-230 3-148 (346)
24 KOG0144 RNA-binding protein CU 99.9 7.7E-25 1.7E-29 176.6 13.6 219 7-230 122-502 (510)
25 KOG0124 Polypyrimidine tract-b 99.9 2.1E-24 4.5E-29 171.1 12.5 165 10-228 114-286 (544)
26 TIGR01645 half-pint poly-U bin 99.9 4.3E-21 9.3E-26 166.3 24.8 80 8-91 203-285 (612)
27 KOG0123 Polyadenylate-binding 99.9 4.3E-22 9.4E-27 164.8 16.4 147 10-230 2-151 (369)
28 KOG0110 RNA-binding protein (R 99.9 1.1E-22 2.3E-27 173.3 12.5 164 11-230 517-691 (725)
29 KOG0105 Alternative splicing f 99.9 1.2E-21 2.7E-26 141.8 15.4 175 6-220 3-177 (241)
30 KOG0123 Polyadenylate-binding 99.9 4.9E-21 1.1E-25 158.6 14.5 165 8-231 75-245 (369)
31 KOG0147 Transcriptional coacti 99.9 7.2E-21 1.6E-25 158.2 14.7 212 10-229 279-525 (549)
32 KOG0147 Transcriptional coacti 99.8 1.5E-21 3.1E-26 162.3 6.4 173 4-228 174-354 (549)
33 KOG1457 RNA binding protein (c 99.8 3.9E-20 8.4E-25 137.8 11.4 208 9-220 34-275 (284)
34 KOG0148 Apoptosis-promoting RN 99.8 6.9E-20 1.5E-24 140.1 10.4 135 5-231 2-141 (321)
35 KOG1190 Polypyrimidine tract-b 99.8 2.5E-18 5.5E-23 138.4 17.0 188 9-231 297-490 (492)
36 KOG4205 RNA-binding protein mu 99.8 1.8E-19 4E-24 144.6 10.3 162 8-230 5-174 (311)
37 PLN03134 glycine-rich RNA-bind 99.8 1.5E-18 3.3E-23 126.0 11.6 82 6-91 31-115 (144)
38 KOG0110 RNA-binding protein (R 99.8 9.3E-19 2E-23 149.5 10.4 208 5-230 381-596 (725)
39 KOG1548 Transcription elongati 99.8 1.5E-17 3.2E-22 131.4 16.0 193 7-228 132-348 (382)
40 KOG4211 Splicing factor hnRNP- 99.8 1.6E-17 3.5E-22 136.7 16.7 170 2-229 3-179 (510)
41 KOG1190 Polypyrimidine tract-b 99.8 1.5E-17 3.3E-22 133.9 13.2 208 10-230 151-371 (492)
42 KOG0106 Alternative splicing f 99.8 2E-18 4.4E-23 130.6 7.7 165 10-227 2-166 (216)
43 PLN03134 glycine-rich RNA-bind 99.7 3.4E-17 7.4E-22 118.9 10.1 76 154-230 32-112 (144)
44 PF00076 RRM_1: RNA recognitio 99.7 7.4E-17 1.6E-21 102.9 9.1 68 12-83 1-70 (70)
45 KOG0124 Polypyrimidine tract-b 99.7 1.6E-15 3.5E-20 120.9 15.9 84 6-93 207-293 (544)
46 KOG0114 Predicted RNA-binding 99.7 2.7E-16 5.9E-21 103.5 8.7 80 8-91 17-96 (124)
47 KOG1456 Heterogeneous nuclear 99.7 3.3E-15 7.2E-20 119.4 16.5 221 4-231 115-362 (494)
48 TIGR01648 hnRNP-R-Q heterogene 99.7 5.5E-16 1.2E-20 134.5 13.0 136 8-184 232-369 (578)
49 KOG4212 RNA-binding protein hn 99.7 4.4E-15 9.5E-20 120.9 17.1 216 8-228 43-290 (608)
50 KOG0107 Alternative splicing f 99.7 2E-16 4.3E-21 114.0 8.1 78 7-90 8-85 (195)
51 PLN03120 nucleic acid binding 99.7 4.1E-16 8.9E-21 121.2 10.4 77 8-89 3-79 (260)
52 KOG0107 Alternative splicing f 99.7 2.9E-16 6.3E-21 113.1 8.0 75 155-230 9-83 (195)
53 PF14259 RRM_6: RNA recognitio 99.7 1.4E-15 3E-20 97.2 9.4 68 12-83 1-70 (70)
54 PF00076 RRM_1: RNA recognitio 99.6 4.6E-16 1E-20 99.2 6.6 66 159-225 1-70 (70)
55 KOG0120 Splicing factor U2AF, 99.6 8.9E-16 1.9E-20 129.3 9.4 180 8-228 288-488 (500)
56 KOG0125 Ataxin 2-binding prote 99.6 1.2E-15 2.5E-20 120.0 8.7 82 5-90 92-174 (376)
57 COG0724 RNA-binding proteins ( 99.6 1E-14 2.3E-19 117.1 12.9 142 9-191 115-260 (306)
58 PLN03121 nucleic acid binding 99.6 4.6E-15 1E-19 113.6 9.9 78 7-89 3-80 (243)
59 KOG0114 Predicted RNA-binding 99.6 8.9E-15 1.9E-19 96.4 9.2 77 151-228 13-91 (124)
60 PLN03213 repressor of silencin 99.6 4E-15 8.6E-20 122.9 9.3 79 6-90 7-88 (759)
61 KOG0122 Translation initiation 99.6 5.2E-15 1.1E-19 112.0 9.0 79 8-90 188-269 (270)
62 KOG0125 Ataxin 2-binding prote 99.6 5.4E-15 1.2E-19 116.3 9.2 75 155-230 95-172 (376)
63 PLN03120 nucleic acid binding 99.6 7.3E-15 1.6E-19 114.3 9.9 73 156-230 4-78 (260)
64 KOG0121 Nuclear cap-binding pr 99.6 3.3E-15 7.1E-20 102.3 6.8 78 6-87 33-113 (153)
65 TIGR01659 sex-lethal sex-letha 99.6 7.5E-15 1.6E-19 121.2 10.3 78 152-230 103-185 (346)
66 PF14259 RRM_6: RNA recognitio 99.6 1.2E-14 2.7E-19 92.7 7.6 66 159-225 1-70 (70)
67 KOG0113 U1 small nuclear ribon 99.5 2.5E-14 5.4E-19 111.3 8.7 79 7-89 99-180 (335)
68 KOG1456 Heterogeneous nuclear 99.5 1.7E-13 3.7E-18 109.7 13.0 164 7-230 29-197 (494)
69 PF13893 RRM_5: RNA recognitio 99.5 5.9E-14 1.3E-18 85.5 7.5 56 173-229 1-56 (56)
70 smart00362 RRM_2 RNA recogniti 99.5 1.3E-13 2.8E-18 87.7 9.1 70 11-84 1-71 (72)
71 smart00362 RRM_2 RNA recogniti 99.5 9E-14 1.9E-18 88.4 8.3 69 158-227 1-72 (72)
72 PLN03213 repressor of silencin 99.5 8.1E-14 1.8E-18 115.3 9.6 76 154-230 8-86 (759)
73 KOG0126 Predicted RNA-binding 99.5 2.5E-15 5.5E-20 108.9 0.7 77 7-87 33-112 (219)
74 KOG0121 Nuclear cap-binding pr 99.5 4.9E-14 1.1E-18 96.5 6.8 75 154-229 34-113 (153)
75 PF13893 RRM_5: RNA recognitio 99.5 1.5E-13 3.3E-18 83.6 8.4 56 30-87 1-56 (56)
76 KOG0122 Translation initiation 99.5 8.9E-14 1.9E-18 105.4 8.2 75 155-230 188-267 (270)
77 KOG0149 Predicted RNA-binding 99.5 4.5E-14 9.7E-19 106.6 6.5 77 6-87 9-88 (247)
78 KOG0105 Alternative splicing f 99.5 5.6E-14 1.2E-18 102.3 6.7 76 154-230 4-81 (241)
79 KOG4207 Predicted splicing fac 99.5 8E-14 1.7E-18 103.2 6.3 84 3-90 7-93 (256)
80 PLN03121 nucleic acid binding 99.5 3.5E-13 7.6E-18 103.4 9.8 73 155-229 4-78 (243)
81 KOG4207 Predicted splicing fac 99.5 1.4E-13 3E-18 101.9 6.2 74 156-230 13-91 (256)
82 smart00360 RRM RNA recognition 99.4 5.1E-13 1.1E-17 84.6 7.8 67 14-84 1-70 (71)
83 cd00590 RRM RRM (RNA recogniti 99.4 9.4E-13 2E-17 84.1 9.0 70 158-228 1-74 (74)
84 cd00590 RRM RRM (RNA recogniti 99.4 1.2E-12 2.6E-17 83.6 9.3 72 11-86 1-74 (74)
85 KOG0108 mRNA cleavage and poly 99.4 3.5E-13 7.6E-18 113.1 8.4 77 10-90 19-98 (435)
86 KOG0130 RNA-binding protein RB 99.4 3.4E-13 7.5E-18 93.2 6.6 75 154-229 70-149 (170)
87 KOG0145 RNA-binding protein EL 99.4 9.3E-13 2E-17 100.9 9.3 78 152-230 37-119 (360)
88 KOG0120 Splicing factor U2AF, 99.4 8.2E-13 1.8E-17 111.6 8.7 180 4-229 170-366 (500)
89 KOG4212 RNA-binding protein hn 99.4 1E-11 2.2E-16 101.6 14.5 77 152-229 532-608 (608)
90 smart00360 RRM RNA recognition 99.4 1.3E-12 2.9E-17 82.6 7.8 66 161-227 1-71 (71)
91 KOG0130 RNA-binding protein RB 99.4 6E-13 1.3E-17 92.0 6.1 77 9-89 72-151 (170)
92 KOG1365 RNA-binding protein Fu 99.4 2.9E-12 6.3E-17 103.1 10.8 183 9-226 161-356 (508)
93 KOG4206 Spliceosomal protein s 99.4 1.6E-12 3.5E-17 97.9 8.1 77 154-231 7-89 (221)
94 KOG0112 Large RNA-binding prot 99.4 4.1E-13 8.8E-18 118.0 5.0 159 5-230 368-529 (975)
95 KOG0117 Heterogeneous nuclear 99.4 1.4E-12 3E-17 106.8 7.6 76 9-93 259-334 (506)
96 KOG0113 U1 small nuclear ribon 99.4 4.3E-12 9.3E-17 99.0 9.0 78 151-229 96-178 (335)
97 KOG0111 Cyclophilin-type pepti 99.4 7E-13 1.5E-17 99.1 4.4 82 7-92 8-92 (298)
98 KOG0126 Predicted RNA-binding 99.3 1.5E-13 3.2E-18 99.8 -0.3 72 156-228 35-111 (219)
99 KOG0131 Splicing factor 3b, su 99.3 3.1E-12 6.7E-17 93.0 6.3 75 154-229 7-86 (203)
100 KOG0149 Predicted RNA-binding 99.3 3.4E-12 7.4E-17 96.5 6.4 72 156-229 12-88 (247)
101 COG0724 RNA-binding proteins ( 99.3 1.3E-11 2.8E-16 99.0 9.2 74 156-230 115-193 (306)
102 smart00361 RRM_1 RNA recogniti 99.3 2E-11 4.4E-16 77.7 8.2 62 23-84 2-69 (70)
103 KOG0109 RNA-binding protein LA 99.3 4.6E-12 9.9E-17 98.5 5.6 76 6-90 75-150 (346)
104 KOG0108 mRNA cleavage and poly 99.3 9.4E-12 2E-16 104.6 7.7 73 157-230 19-96 (435)
105 KOG0111 Cyclophilin-type pepti 99.3 3.7E-12 7.9E-17 95.3 4.1 78 152-230 6-88 (298)
106 KOG4454 RNA binding protein (R 99.3 1.9E-12 4.2E-17 96.7 1.8 141 1-219 1-151 (267)
107 KOG4211 Splicing factor hnRNP- 99.2 8.8E-11 1.9E-15 97.5 10.6 207 7-220 101-347 (510)
108 KOG4208 Nucleolar RNA-binding 99.2 6.2E-11 1.4E-15 88.1 8.3 82 5-90 45-130 (214)
109 smart00361 RRM_1 RNA recogniti 99.2 5.6E-11 1.2E-15 75.7 6.7 57 170-227 2-70 (70)
110 KOG0132 RNA polymerase II C-te 99.2 5.6E-11 1.2E-15 103.3 7.6 77 9-92 421-497 (894)
111 PF04059 RRM_2: RNA recognitio 99.2 2.9E-10 6.2E-15 76.1 9.3 78 10-89 2-86 (97)
112 KOG0129 Predicted RNA-binding 99.2 1.1E-09 2.3E-14 91.7 14.7 149 7-212 257-432 (520)
113 PF11608 Limkain-b1: Limkain b 99.2 2.9E-10 6.4E-15 72.5 8.2 75 10-91 3-78 (90)
114 KOG0415 Predicted peptidyl pro 99.2 6.9E-11 1.5E-15 94.4 6.2 79 151-230 234-317 (479)
115 KOG0132 RNA polymerase II C-te 99.1 1.4E-10 3E-15 100.9 7.5 74 155-230 420-493 (894)
116 KOG0415 Predicted peptidyl pro 99.1 2E-10 4.3E-15 91.8 6.8 83 6-92 236-321 (479)
117 KOG0153 Predicted RNA-binding 99.1 2.4E-10 5.2E-15 91.1 7.1 77 152-230 224-301 (377)
118 KOG0153 Predicted RNA-binding 99.1 4E-10 8.7E-15 89.8 8.2 81 2-89 221-302 (377)
119 KOG0146 RNA-binding protein ET 99.1 1.6E-10 3.4E-15 89.1 5.5 83 5-91 281-366 (371)
120 KOG0128 RNA-binding protein SA 99.1 5.3E-12 1.2E-16 110.6 -3.2 140 7-228 665-811 (881)
121 KOG2193 IGF-II mRNA-binding pr 99.0 5.5E-11 1.2E-15 96.9 -0.5 147 10-228 2-153 (584)
122 KOG4660 Protein Mei2, essentia 99.0 5.2E-10 1.1E-14 94.3 5.0 77 148-225 67-143 (549)
123 KOG4660 Protein Mei2, essentia 99.0 9.5E-10 2E-14 92.7 5.8 175 6-228 72-246 (549)
124 KOG1457 RNA binding protein (c 99.0 5.7E-09 1.2E-13 78.6 9.2 79 153-231 31-117 (284)
125 KOG0533 RRM motif-containing p 98.9 7.3E-09 1.6E-13 80.6 8.5 82 7-92 81-164 (243)
126 KOG0151 Predicted splicing reg 98.9 8.4E-09 1.8E-13 89.3 9.4 77 153-230 171-255 (877)
127 KOG4210 Nuclear localization s 98.9 2.4E-09 5.1E-14 86.2 5.5 167 8-230 87-262 (285)
128 KOG4661 Hsp27-ERE-TATA-binding 98.9 3.9E-09 8.5E-14 89.3 6.5 76 154-230 403-483 (940)
129 KOG4661 Hsp27-ERE-TATA-binding 98.9 5.3E-09 1.1E-13 88.6 6.9 79 7-89 403-484 (940)
130 KOG0226 RNA-binding proteins [ 98.9 3.6E-09 7.7E-14 81.1 5.2 142 31-227 117-265 (290)
131 KOG0151 Predicted splicing reg 98.8 1.1E-08 2.4E-13 88.6 6.8 80 6-89 171-256 (877)
132 PF04059 RRM_2: RNA recognitio 98.8 6.3E-08 1.4E-12 64.9 8.6 74 157-230 2-85 (97)
133 KOG4208 Nucleolar RNA-binding 98.8 4.1E-08 9E-13 73.2 7.7 73 155-228 48-126 (214)
134 KOG4307 RNA binding protein RB 98.7 6.2E-08 1.3E-12 83.9 9.0 190 7-227 309-509 (944)
135 KOG4307 RNA binding protein RB 98.7 2.3E-07 5E-12 80.5 12.1 80 7-90 432-514 (944)
136 KOG4205 RNA-binding protein mu 98.7 2.2E-08 4.9E-13 81.0 5.3 81 9-94 97-180 (311)
137 KOG4676 Splicing factor, argin 98.7 1.4E-08 3.1E-13 82.2 4.1 189 9-219 7-214 (479)
138 KOG0116 RasGAP SH3 binding pro 98.7 5.6E-08 1.2E-12 81.6 6.7 76 7-87 286-364 (419)
139 KOG1548 Transcription elongati 98.6 2.1E-07 4.4E-12 74.6 9.2 75 155-230 133-219 (382)
140 KOG0533 RRM motif-containing p 98.6 1.8E-07 4E-12 72.9 7.7 72 157-229 84-159 (243)
141 KOG1365 RNA-binding protein Fu 98.6 1.7E-06 3.8E-11 70.3 13.5 156 7-212 58-225 (508)
142 KOG0106 Alternative splicing f 98.6 3.3E-08 7.2E-13 75.4 3.4 69 158-230 3-71 (216)
143 KOG4209 Splicing factor RNPS1, 98.6 1.2E-07 2.5E-12 74.1 6.2 80 6-90 98-180 (231)
144 PF08777 RRM_3: RNA binding mo 98.5 8.7E-07 1.9E-11 60.7 7.0 59 157-216 2-60 (105)
145 PF11608 Limkain-b1: Limkain b 98.4 1.2E-06 2.6E-11 56.1 6.8 68 157-230 3-75 (90)
146 KOG0116 RasGAP SH3 binding pro 98.4 5.4E-07 1.2E-11 75.8 6.2 73 156-230 288-365 (419)
147 KOG4454 RNA binding protein (R 98.4 1.6E-07 3.5E-12 70.7 2.3 75 153-228 6-83 (267)
148 KOG4209 Splicing factor RNPS1, 98.4 7.1E-07 1.5E-11 69.7 5.8 74 155-230 100-178 (231)
149 KOG0226 RNA-binding proteins [ 98.4 4.3E-07 9.2E-12 69.9 4.1 79 6-88 187-268 (290)
150 COG5175 MOT2 Transcriptional r 98.1 6.1E-06 1.3E-10 66.2 5.9 83 9-91 114-204 (480)
151 PF08952 DUF1866: Domain of un 98.1 3.5E-05 7.6E-10 55.1 8.7 81 6-92 24-109 (146)
152 KOG2314 Translation initiation 98.0 2.1E-05 4.6E-10 67.1 7.7 79 7-85 56-139 (698)
153 PF08777 RRM_3: RNA binding mo 98.0 2.6E-05 5.6E-10 53.4 6.6 69 10-85 2-75 (105)
154 PF14605 Nup35_RRM_2: Nup53/35 97.8 5.8E-05 1.3E-09 44.8 5.1 52 10-69 2-53 (53)
155 KOG1995 Conserved Zn-finger pr 97.8 2.5E-05 5.5E-10 63.2 4.5 78 153-231 63-153 (351)
156 KOG2416 Acinus (induces apopto 97.8 2E-05 4.2E-10 67.7 3.9 83 148-231 436-521 (718)
157 PF05172 Nup35_RRM: Nup53/35/4 97.8 0.00012 2.7E-09 49.3 6.6 72 156-229 6-89 (100)
158 COG5175 MOT2 Transcriptional r 97.7 0.00035 7.6E-09 56.3 9.6 75 154-229 112-200 (480)
159 KOG2314 Translation initiation 97.7 0.00016 3.5E-09 61.9 7.9 74 154-227 56-139 (698)
160 PF14605 Nup35_RRM_2: Nup53/35 97.7 0.00011 2.3E-09 43.7 4.9 52 157-210 2-53 (53)
161 KOG4210 Nuclear localization s 97.7 3.1E-05 6.8E-10 62.5 3.1 79 9-92 184-266 (285)
162 KOG1995 Conserved Zn-finger pr 97.7 6.1E-05 1.3E-09 61.1 4.5 82 6-91 63-155 (351)
163 KOG2416 Acinus (induces apopto 97.6 5.7E-05 1.2E-09 65.0 3.7 81 2-89 437-521 (718)
164 PF05172 Nup35_RRM: Nup53/35/4 97.6 0.00028 6E-09 47.7 6.1 75 7-87 4-89 (100)
165 KOG3152 TBP-binding protein, a 97.6 5.3E-05 1.1E-09 58.7 2.6 67 155-221 73-156 (278)
166 KOG2202 U2 snRNP splicing fact 97.5 5.5E-05 1.2E-09 58.7 2.2 58 171-229 83-145 (260)
167 PF15023 DUF4523: Protein of u 97.5 0.0009 2E-08 47.5 7.9 77 6-88 83-160 (166)
168 KOG0115 RNA-binding protein p5 97.5 0.00035 7.5E-09 54.3 6.1 84 63-213 5-92 (275)
169 KOG3152 TBP-binding protein, a 97.4 0.0001 2.2E-09 57.1 2.8 70 8-81 73-157 (278)
170 KOG0128 RNA-binding protein SA 97.4 1.6E-05 3.5E-10 70.8 -1.8 158 9-220 571-736 (881)
171 KOG1855 Predicted RNA-binding 97.4 0.00012 2.7E-09 60.6 3.3 65 154-218 229-311 (484)
172 KOG2202 U2 snRNP splicing fact 97.4 0.00011 2.3E-09 57.1 2.5 57 32-88 88-146 (260)
173 KOG0112 Large RNA-binding prot 97.4 0.00028 6E-09 63.6 4.9 78 6-90 452-531 (975)
174 PF08952 DUF1866: Domain of un 97.3 0.0016 3.5E-08 46.7 7.2 74 151-229 22-104 (146)
175 PF08675 RNA_bind: RNA binding 97.3 0.0017 3.7E-08 41.8 6.6 56 156-215 9-64 (87)
176 KOG1855 Predicted RNA-binding 97.3 0.00032 6.9E-09 58.3 3.9 65 7-75 229-309 (484)
177 KOG1996 mRNA splicing factor [ 97.2 0.00099 2.2E-08 52.8 5.8 58 170-228 300-363 (378)
178 KOG1996 mRNA splicing factor [ 97.0 0.0021 4.6E-08 51.0 6.4 66 23-88 296-365 (378)
179 PF15023 DUF4523: Protein of u 96.9 0.0068 1.5E-07 43.1 7.5 76 152-231 82-161 (166)
180 KOG0129 Predicted RNA-binding 96.9 0.004 8.6E-08 53.1 7.0 63 5-71 366-432 (520)
181 PF10309 DUF2414: Protein of u 96.8 0.0086 1.9E-07 36.5 6.4 53 157-213 6-62 (62)
182 PF08675 RNA_bind: RNA binding 96.7 0.018 3.8E-07 37.2 7.4 55 9-73 9-63 (87)
183 KOG4849 mRNA cleavage factor I 96.5 0.0026 5.5E-08 51.7 3.2 71 10-84 81-156 (498)
184 PF03467 Smg4_UPF3: Smg-4/UPF3 96.4 0.0089 1.9E-07 44.9 5.3 79 7-89 5-97 (176)
185 PF07576 BRAP2: BRCA1-associat 96.1 0.076 1.6E-06 36.6 8.5 77 7-87 11-92 (110)
186 PF04847 Calcipressin: Calcipr 96.1 0.01 2.2E-07 44.8 4.6 60 169-230 8-69 (184)
187 KOG4676 Splicing factor, argin 96.1 0.0076 1.6E-07 49.8 4.1 67 158-226 9-83 (479)
188 PF04847 Calcipressin: Calcipr 96.1 0.018 3.8E-07 43.6 5.7 60 26-88 8-69 (184)
189 KOG4574 RNA-binding protein (c 96.1 0.0046 1E-07 55.7 2.8 71 159-230 301-372 (1007)
190 PF07576 BRAP2: BRCA1-associat 96.0 0.12 2.5E-06 35.7 9.0 66 155-220 12-81 (110)
191 KOG2193 IGF-II mRNA-binding pr 96.0 0.0097 2.1E-07 49.7 4.1 70 158-229 3-73 (584)
192 KOG2591 c-Mpl binding protein, 95.7 0.025 5.3E-07 48.9 5.4 70 7-84 173-246 (684)
193 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.018 3.9E-07 43.3 4.1 66 155-220 6-82 (176)
194 PF10309 DUF2414: Protein of u 95.5 0.092 2E-06 32.0 6.2 54 9-72 5-62 (62)
195 KOG4849 mRNA cleavage factor I 95.4 0.019 4.1E-07 46.8 3.5 76 153-228 77-159 (498)
196 KOG0115 RNA-binding protein p5 95.3 0.023 5.1E-07 44.4 3.9 74 10-87 32-111 (275)
197 KOG2591 c-Mpl binding protein, 95.2 0.11 2.4E-06 45.1 7.7 59 155-215 174-234 (684)
198 KOG0804 Cytoplasmic Zn-finger 95.0 0.093 2E-06 44.4 6.7 65 156-220 74-142 (493)
199 PF07292 NID: Nmi/IFP 35 domai 94.9 0.045 9.7E-07 36.0 3.8 27 152-178 48-74 (88)
200 KOG2068 MOT2 transcription fac 94.7 0.013 2.8E-07 47.6 1.1 73 156-229 77-160 (327)
201 KOG4285 Mitotic phosphoprotein 94.6 0.069 1.5E-06 42.8 4.8 65 159-226 200-264 (350)
202 KOG4285 Mitotic phosphoprotein 94.6 0.19 4.1E-06 40.4 7.2 71 9-88 197-268 (350)
203 KOG2135 Proteins containing th 94.5 0.025 5.5E-07 47.9 2.2 74 10-91 373-447 (526)
204 KOG2068 MOT2 transcription fac 94.3 0.019 4.1E-07 46.7 1.2 81 10-92 78-165 (327)
205 PF11767 SET_assoc: Histone ly 94.0 0.33 7.1E-06 30.1 5.9 55 20-84 11-65 (66)
206 KOG2135 Proteins containing th 93.8 0.034 7.3E-07 47.2 1.6 73 154-229 370-443 (526)
207 KOG0804 Cytoplasmic Zn-finger 93.5 0.29 6.3E-06 41.5 6.6 71 5-79 70-142 (493)
208 PF03880 DbpA: DbpA RNA bindin 93.4 0.44 9.6E-06 30.2 6.1 66 158-229 2-74 (74)
209 KOG2253 U1 snRNP complex, subu 93.4 0.064 1.4E-06 47.4 2.7 72 5-86 36-107 (668)
210 PF10567 Nab6_mRNP_bdg: RNA-re 93.1 3.9 8.4E-05 33.1 14.2 171 5-214 11-212 (309)
211 KOG2253 U1 snRNP complex, subu 93.0 0.085 1.8E-06 46.7 2.8 71 151-226 35-105 (668)
212 PF14111 DUF4283: Domain of un 92.9 0.26 5.6E-06 35.9 5.1 112 20-191 28-140 (153)
213 PF11767 SET_assoc: Histone ly 92.7 0.63 1.4E-05 28.8 5.7 55 167-226 11-65 (66)
214 KOG4410 5-formyltetrahydrofola 89.2 1.5 3.2E-05 35.2 6.1 52 152-203 326-377 (396)
215 KOG2318 Uncharacterized conser 89.1 2 4.4E-05 37.8 7.3 68 153-220 171-295 (650)
216 PF03880 DbpA: DbpA RNA bindin 88.7 1.6 3.4E-05 27.7 5.0 57 21-87 13-74 (74)
217 KOG4574 RNA-binding protein (c 87.3 0.46 9.9E-06 43.5 2.5 75 11-92 300-376 (1007)
218 KOG2891 Surface glycoprotein [ 85.7 0.4 8.7E-06 38.2 1.2 62 157-218 150-247 (445)
219 KOG4410 5-formyltetrahydrofola 83.5 2.5 5.4E-05 34.0 4.7 51 8-64 329-379 (396)
220 KOG2318 Uncharacterized conser 79.7 18 0.0004 32.2 8.9 85 6-90 171-308 (650)
221 KOG4019 Calcineurin-mediated s 79.7 1.8 3.9E-05 32.4 2.5 71 159-230 13-88 (193)
222 PF10567 Nab6_mRNP_bdg: RNA-re 78.2 6.9 0.00015 31.7 5.5 75 154-229 13-105 (309)
223 KOG2891 Surface glycoprotein [ 76.1 0.85 1.8E-05 36.4 0.0 65 9-77 149-247 (445)
224 KOG4483 Uncharacterized conser 73.8 9.6 0.00021 32.3 5.5 56 155-212 390-446 (528)
225 PF15513 DUF4651: Domain of un 73.2 8.8 0.00019 23.3 3.9 20 171-190 9-28 (62)
226 PF03468 XS: XS domain; Inter 73.0 5.6 0.00012 27.7 3.5 56 11-70 10-75 (116)
227 PF02829 3H: 3H domain; Inter 68.0 23 0.00051 23.8 5.5 52 23-74 7-58 (98)
228 KOG4019 Calcineurin-mediated s 63.0 11 0.00023 28.4 3.3 79 9-90 10-90 (193)
229 PF14893 PNMA: PNMA 62.6 8.4 0.00018 32.1 3.1 56 7-62 16-72 (331)
230 KOG0156 Cytochrome P450 CYP2 s 61.6 17 0.00036 32.2 4.9 62 13-82 36-97 (489)
231 PF07292 NID: Nmi/IFP 35 domai 60.9 2.6 5.7E-05 27.7 -0.1 22 7-28 50-71 (88)
232 PF02714 DUF221: Domain of unk 60.4 12 0.00025 30.9 3.6 37 55-93 1-37 (325)
233 PF03468 XS: XS domain; Inter 59.3 14 0.00031 25.6 3.3 53 158-210 10-74 (116)
234 TIGR03636 L23_arch archaeal ri 58.6 46 0.00099 21.3 6.0 57 11-69 15-71 (77)
235 PF09707 Cas_Cas2CT1978: CRISP 57.4 23 0.00051 23.2 3.9 50 8-61 24-73 (86)
236 KOG1295 Nonsense-mediated deca 57.0 15 0.00032 30.9 3.6 69 7-79 5-79 (376)
237 KOG3424 40S ribosomal protein 55.1 69 0.0015 22.3 6.0 47 20-67 34-84 (132)
238 KOG4213 RNA-binding protein La 50.7 23 0.0005 26.6 3.3 37 32-70 128-168 (205)
239 KOG4483 Uncharacterized conser 48.0 46 0.00099 28.4 5.0 61 9-77 391-451 (528)
240 TIGR03636 L23_arch archaeal ri 47.3 74 0.0016 20.3 5.2 55 159-213 16-74 (77)
241 PF03439 Spt5-NGN: Early trans 47.2 36 0.00079 22.0 3.6 34 182-215 33-66 (84)
242 PRK11558 putative ssRNA endonu 47.1 32 0.00069 23.1 3.3 50 9-62 27-76 (97)
243 PRK15321 putative type III sec 47.0 16 0.00034 24.3 1.8 43 14-65 26-68 (120)
244 PF00403 HMA: Heavy-metal-asso 45.8 62 0.0013 19.0 6.2 54 158-212 1-58 (62)
245 KOG4008 rRNA processing protei 44.3 19 0.00042 28.2 2.2 37 153-189 37-73 (261)
246 PRK01178 rps24e 30S ribosomal 42.5 1.1E+02 0.0023 20.7 6.0 48 20-68 30-81 (99)
247 KOG2295 C2H2 Zn-finger protein 41.8 4.6 9.9E-05 35.6 -1.6 71 8-82 230-303 (648)
248 COG5638 Uncharacterized conser 41.7 84 0.0018 27.0 5.7 69 152-220 142-285 (622)
249 PTZ00071 40S ribosomal protein 40.6 1.3E+02 0.0029 21.4 6.0 47 20-67 35-86 (132)
250 KOG4365 Uncharacterized conser 40.6 6.2 0.00013 33.8 -1.0 70 159-230 6-80 (572)
251 KOG2295 C2H2 Zn-finger protein 39.7 8.3 0.00018 34.1 -0.4 65 156-220 231-300 (648)
252 PF11823 DUF3343: Protein of u 39.0 47 0.001 20.7 3.1 30 53-82 2-31 (73)
253 PHA01632 hypothetical protein 39.0 20 0.00044 21.1 1.3 27 13-39 20-46 (64)
254 COG0150 PurM Phosphoribosylami 38.0 13 0.00027 31.0 0.4 50 167-216 272-322 (345)
255 KOG4365 Uncharacterized conser 36.2 7 0.00015 33.5 -1.3 75 9-88 3-80 (572)
256 KOG2187 tRNA uracil-5-methyltr 36.0 30 0.00066 30.6 2.4 69 160-229 29-98 (534)
257 TIGR01873 cas_CT1978 CRISPR-as 34.5 79 0.0017 20.8 3.6 50 9-61 25-74 (87)
258 PF15407 Spo7_2_N: Sporulation 34.1 27 0.00058 21.7 1.3 19 7-25 25-43 (67)
259 PF14893 PNMA: PNMA 32.6 27 0.00058 29.2 1.5 53 152-204 14-73 (331)
260 KOG1295 Nonsense-mediated deca 29.9 61 0.0013 27.4 3.1 62 157-218 8-77 (376)
261 KOG4008 rRNA processing protei 29.7 44 0.00094 26.4 2.1 33 7-43 38-70 (261)
262 KOG2187 tRNA uracil-5-methyltr 29.3 55 0.0012 29.0 2.9 42 49-90 60-101 (534)
263 PRK14548 50S ribosomal protein 28.9 1.7E+02 0.0037 19.0 6.4 58 11-70 22-79 (84)
264 PHA03008 hypothetical protein; 25.6 1.7E+02 0.0036 22.6 4.4 44 151-194 16-59 (234)
265 COG0030 KsgA Dimethyladenosine 24.5 1E+02 0.0023 24.8 3.5 30 10-43 96-125 (259)
266 PF10281 Ish1: Putative stress 24.1 62 0.0013 17.3 1.5 17 167-183 3-19 (38)
267 PF00398 RrnaAD: Ribosomal RNA 23.6 99 0.0021 24.7 3.3 29 9-41 97-127 (262)
268 PF12829 Mhr1: Transcriptional 23.5 1.1E+02 0.0023 20.4 2.8 23 51-73 50-72 (91)
269 cd04889 ACT_PDH-BS-like C-term 23.4 1.5E+02 0.0034 16.7 5.2 38 32-69 17-55 (56)
270 PRK08559 nusG transcription an 22.7 1.5E+02 0.0032 21.6 3.8 33 183-215 36-68 (153)
271 PF08544 GHMP_kinases_C: GHMP 20.8 2.2E+02 0.0048 17.6 5.8 44 170-214 36-80 (85)
No 1
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=100.00 E-value=3.5e-34 Score=235.39 Aligned_cols=162 Identities=22% Similarity=0.420 Sum_probs=144.4
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
+....++|||+|||.++|+++|+ ++|+.||+|.+|+|++ +++++|||||+|.++++|.+|+..||+..+.+++
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~----~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~ 178 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELY----ALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKR 178 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCCce
Confidence 34578999999999999999999 9999999999999986 6889999999999999999999999999999999
Q ss_pred eEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEe
Q 026902 82 MRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFI 161 (231)
Q Consensus 82 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 161 (231)
|+|.++.+... ....++|||
T Consensus 179 i~V~~a~p~~~------------------------------------------------------------~~~~~~lfV 198 (346)
T TIGR01659 179 LKVSYARPGGE------------------------------------------------------------SIKDTNLYV 198 (346)
T ss_pred eeeeccccccc------------------------------------------------------------ccccceeEE
Confidence 99998753211 012356999
Q ss_pred cCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCC-CCeEEEecc
Q 026902 162 QNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQ-NPMAITFAK 230 (231)
Q Consensus 162 ~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~-~~l~V~~a~ 230 (231)
+|||..+|+++|+++|++||.|..+.+++++ +|+|||+|.+.++|.+|+..||+..+.++ ++|+|.||+
T Consensus 199 ~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~ 273 (346)
T TIGR01659 199 TNLPRTITDDQLDTIFGKYGQIVQKNILRDKLTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAE 273 (346)
T ss_pred eCCCCcccHHHHHHHHHhcCCEEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence 9999999999999999999999999998863 58999999999999999999999988653 799999986
No 2
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=100.00 E-value=5.9e-33 Score=239.48 Aligned_cols=170 Identities=15% Similarity=0.280 Sum_probs=144.5
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
...++|||+|||+.+++++|+ ++|+.||+|.+|++++ +++++|||||+|.+.++|.+|++.|||..+.|+.|+
T Consensus 105 ~~~~rLfVGnLp~~~tEe~Lr----~lF~~fG~I~sV~I~~D~~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~Ik 180 (612)
T TIGR01645 105 AIMCRVYVGSISFELREDTIR----RAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIK 180 (612)
T ss_pred cCCCEEEEcCCCCCCCHHHHH----HHHHccCCEEEEEEeecCCCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceee
Confidence 456899999999999999999 9999999999999986 688999999999999999999999999999999999
Q ss_pred EEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecC
Q 026902 84 IQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQN 163 (231)
Q Consensus 84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 163 (231)
|.++....... .... .........++|||+|
T Consensus 181 V~rp~~~p~a~-----~~~~--------------------------------------------~~~~~~~~~~rLfVgn 211 (612)
T TIGR01645 181 VGRPSNMPQAQ-----PIID--------------------------------------------MVQEEAKKFNRIYVAS 211 (612)
T ss_pred ecccccccccc-----cccc--------------------------------------------cccccccccceEEeec
Confidence 97543111000 0000 0001112446799999
Q ss_pred CCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 164 LPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 164 lp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
||..+++++|+++|+.||.|.++.+.++ ++|||||+|.+.++|..|+..|||+.|+| +.|+|.++.
T Consensus 212 Lp~~vteedLk~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgG-r~LrV~kAi 282 (612)
T TIGR01645 212 VHPDLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGG-QYLRVGKCV 282 (612)
T ss_pred CCCCCCHHHHHHHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCC-eEEEEEecC
Confidence 9999999999999999999999999985 37999999999999999999999999999 999999874
No 3
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=9.1e-32 Score=224.54 Aligned_cols=218 Identities=19% Similarity=0.352 Sum_probs=147.9
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCC--ee
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD--KP 81 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g--~~ 81 (231)
...++|||+|||..+++++|+ ++|+.||.|..+.++. ++.++|||||+|.+.++|.+|+..|||..+.| ++
T Consensus 87 ~~~~~l~v~~l~~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~ 162 (352)
T TIGR01661 87 IKGANLYVSGLPKTMTQHELE----SIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEP 162 (352)
T ss_pred cccceEEECCccccCCHHHHH----HHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCcee
Confidence 356789999999999999999 9999999999998877 47789999999999999999999999998887 57
Q ss_pred eEEEeccCccchhhhcCCCcc-----hhhhh----------------------HHHHHHHHHhhhHHHHHhcccccCCCC
Q 026902 82 MRIQYAKSKSDCVAKEDGSFV-----PREKK----------------------KKQEEKAERKRRAEEAQQSSMANGTGA 134 (231)
Q Consensus 82 l~v~~~~~~~~~~~~~~~~~~-----~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~ 134 (231)
|.|.++..+............ +.... ..................+... ....
T Consensus 163 i~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 241 (352)
T TIGR01661 163 ITVKFANNPSSSNSKGLLSQLEAVQNPQTTRVPLSTILTAAGIGPMHHAAARFRPSAGDFTAVLAHQQQQHAVAQ-QHAA 241 (352)
T ss_pred EEEEECCCCCcCCchhcCchhhcccCcccCCCCccccccccCCCCccCcccccccCcchhhhhhhhhhhhccccc-cccc
Confidence 888888654422111000000 00000 0000000000000000000000 0000
Q ss_pred CCCCCCcccc------cccCCCCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCH
Q 026902 135 QSNGGTAASF------RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDD 203 (231)
Q Consensus 135 ~~~~~~~~~~------~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~ 203 (231)
...+...... ...........+.+|||+|||..+++++|.++|++||.|.++++++++ +|||||+|.+.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~t~~skG~aFV~F~~~ 321 (352)
T TIGR01661 242 QRASPPATDGQTAGLAAGAQIAASDGAGYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLTTNQCKGYGFVSMTNY 321 (352)
T ss_pred ccCCCccccccccccccCCCCCCCCCCCcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCCCCCccceEEEEECCH
Confidence 0000000000 000111123345579999999999999999999999999999999864 79999999999
Q ss_pred HHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 204 VQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 204 ~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
++|.+|+..|||+.|+| +.|+|+|+.
T Consensus 322 ~~A~~Ai~~lnG~~~~g-r~i~V~~~~ 347 (352)
T TIGR01661 322 DEAAMAILSLNGYTLGN-RVLQVSFKT 347 (352)
T ss_pred HHHHHHHHHhCCCEECC-eEEEEEEcc
Confidence 99999999999999999 999999974
No 4
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=4.1e-32 Score=206.61 Aligned_cols=170 Identities=21% Similarity=0.402 Sum_probs=149.5
Q ss_pred EEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026902 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYA 87 (231)
Q Consensus 11 ~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~ 87 (231)
-|||+.|...++.++|| +.|..||.|.+.++++ |++++||+||.|.+.++|+.||+.|||+++++|.|+-.|+
T Consensus 64 hvfvgdls~eI~~e~lr----~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWA 139 (321)
T KOG0148|consen 64 HVFVGDLSPEIDNEKLR----EAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWA 139 (321)
T ss_pred eEEehhcchhcchHHHH----HHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeeccceeecccc
Confidence 48999999999999999 9999999999999999 7999999999999999999999999999999999999998
Q ss_pred cCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCCC
Q 026902 88 KSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHE 167 (231)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~ 167 (231)
..+........ ..-++ .-+...+.++++||+|++..
T Consensus 140 TRKp~e~n~~~----------ltfde----------------------------------V~NQssp~NtsVY~G~I~~~ 175 (321)
T KOG0148|consen 140 TRKPSEMNGKP----------LTFDE----------------------------------VYNQSSPDNTSVYVGNIASG 175 (321)
T ss_pred ccCccccCCCC----------ccHHH----------------------------------HhccCCCCCceEEeCCcCcc
Confidence 75542111000 00000 12345568899999999999
Q ss_pred CCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 168 TTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 168 ~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
+++++|++.|++||.|.+|+++++. ||+||.|++.|.|..||-.+||.+|++ +.++..|.|
T Consensus 176 lte~~mr~~Fs~fG~I~EVRvFk~q-GYaFVrF~tkEaAahAIv~mNntei~G-~~VkCsWGK 236 (321)
T KOG0148|consen 176 LTEDLMRQTFSPFGPIQEVRVFKDQ-GYAFVRFETKEAAAHAIVQMNNTEIGG-QLVRCSWGK 236 (321)
T ss_pred ccHHHHHHhcccCCcceEEEEeccc-ceEEEEecchhhHHHHHHHhcCceeCc-eEEEEeccc
Confidence 9999999999999999999999988 899999999999999999999999999 999999987
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=100.00 E-value=1.8e-31 Score=222.76 Aligned_cols=159 Identities=22% Similarity=0.472 Sum_probs=142.1
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
+.++|||+|||.++++++|+ ++|+.||+|.+|++++ +|+++|||||+|.+.++|.+|+..|||..+.|++|+|
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~----~~F~~~G~i~~v~i~~d~~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v 77 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIR----SLFTSIGEIESCKLVRDKVTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKV 77 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHH----HHHHccCCEEEEEEEEcCCCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEE
Confidence 47899999999999999999 9999999999999987 5889999999999999999999999999999999999
Q ss_pred EeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCC
Q 026902 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 164 (231)
.++.+... .....+|||+||
T Consensus 78 ~~a~~~~~------------------------------------------------------------~~~~~~l~v~~l 97 (352)
T TIGR01661 78 SYARPSSD------------------------------------------------------------SIKGANLYVSGL 97 (352)
T ss_pred Eeeccccc------------------------------------------------------------ccccceEEECCc
Confidence 99753321 113456999999
Q ss_pred CCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCC-CCCeEEEecc
Q 026902 165 PHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITP-QNPMAITFAK 230 (231)
Q Consensus 165 p~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~-~~~l~V~~a~ 230 (231)
|..+++++|..+|++||.|..+.++.+ .+|+|||+|.+.++|..|+..|||..+.+ +.+|.|.|+.
T Consensus 98 ~~~~~~~~l~~~f~~~G~i~~~~~~~~~~~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~ 169 (352)
T TIGR01661 98 PKTMTQHELESIFSPFGQIITSRILSDNVTGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFAN 169 (352)
T ss_pred cccCCHHHHHHHHhccCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECC
Confidence 999999999999999999999999875 36899999999999999999999998876 2678888874
No 6
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=100.00 E-value=2.3e-31 Score=229.25 Aligned_cols=171 Identities=21% Similarity=0.449 Sum_probs=145.0
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..+.++|||+|||..+++++|+ ++|+.||.|..|++++ ++.++|||||+|.+.++|.+|+. |+|..+.|++|
T Consensus 86 ~~~~~~l~V~nlp~~~~~~~l~----~~F~~~G~v~~v~i~~d~~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i 160 (457)
T TIGR01622 86 ERDDRTVFVLQLALKARERDLY----EFFSKVGKVRDVQCIKDRNSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPI 160 (457)
T ss_pred ccCCcEEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEeecCCCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeee
Confidence 4568899999999999999999 9999999999999987 58899999999999999999998 99999999999
Q ss_pred EEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEec
Q 026902 83 RIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQ 162 (231)
Q Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 162 (231)
.|.++.......... . . ......+..++|||+
T Consensus 161 ~v~~~~~~~~~~~~~----------------------------~-------~-------------~~~~~~p~~~~l~v~ 192 (457)
T TIGR01622 161 IVQSSQAEKNRAAKA----------------------------A-------T-------------HQPGDIPNFLKLYVG 192 (457)
T ss_pred EEeecchhhhhhhhc----------------------------c-------c-------------ccCCCCCCCCEEEEc
Confidence 998764222111000 0 0 000112236789999
Q ss_pred CCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 163 NLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 163 nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
|||..+++++|.++|++||.|..|.+..+. +|||||+|.+.++|..|+..|||+.|.+ ++|.|.||+
T Consensus 193 nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g-~~i~v~~a~ 264 (457)
T TIGR01622 193 NLHFNITEQELRQIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAG-RPIKVGYAQ 264 (457)
T ss_pred CCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECC-EEEEEEEcc
Confidence 999999999999999999999999998753 5899999999999999999999999998 999999975
No 7
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=100.00 E-value=1.7e-31 Score=199.40 Aligned_cols=218 Identities=58% Similarity=0.868 Sum_probs=179.4
Q ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 1 ~~~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
|.+.+..++.||||.||+..+..++|++.||.+|++||.|..|...++.+.+|.|||.|.+.+.|..|+..|+|+.|+|+
T Consensus 1 ~~~~~~~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK 80 (221)
T KOG4206|consen 1 ILPMSVNPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYGK 80 (221)
T ss_pred CCccccCCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccCc
Confidence 45667778889999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCC-C--CCCCCCCcccccccCCCCCCCCCC
Q 026902 81 PMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGT-G--AQSNGGTAASFRNANTQETAAPNN 157 (231)
Q Consensus 81 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~~~~~~~ 157 (231)
++++.||+.+++...+..+.++....+...+...... ++...+.. . ...+-+++ ......+++.
T Consensus 81 ~mriqyA~s~sdii~~~~~~~v~~~~k~~~~~~~~~~-------~~~~~ng~~~~~~~~~~p~p------~~~~~~ppn~ 147 (221)
T KOG4206|consen 81 PMRIQYAKSDSDIIAQAPGTFVEKEKKINGEILARIK-------QPLDTNGHFYNMNRMNLPPP------FLAQMAPPNN 147 (221)
T ss_pred hhheecccCccchhhccCceeccccCccccccccccC-------CcccccccccccccccCCCC------ccccCCCCce
Confidence 9999999999998887777666665544333222111 11100000 0 00000000 1134577899
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 158 ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 158 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
++++.|||..++.+.+..+|.+|+..+.++++...++.|||+|.+...|..|.+.|+|+.|..++.+.|.+|++
T Consensus 148 ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~~iAfve~~~d~~a~~a~~~lq~~~it~~~~m~i~~a~K 221 (221)
T KOG4206|consen 148 ILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRSGIAFVEFLSDRQASAAQQALQGFKITKKNTMQITFAKK 221 (221)
T ss_pred EEEEecCCcchhHHHHHHHHhhCcccceeEeccCCCceeEEecchhhhhHHHhhhhccceeccCceEEecccCC
Confidence 99999999999999999999999999999999999999999999999999999999999998559999999985
No 8
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.97 E-value=3.9e-30 Score=207.83 Aligned_cols=212 Identities=21% Similarity=0.388 Sum_probs=154.1
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeC-Ceee
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFY-DKPM 82 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~-g~~l 82 (231)
+-++.||||.||.++.|+||. -+|++.|+|-+++|+. +|.+||||||+|.+.+.|++|++.||+..|. |+.|
T Consensus 81 ~~G~EVfvGkIPrD~~EdeLv----plfEkiG~I~elRLMmD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~i 156 (506)
T KOG0117|consen 81 PRGCEVFVGKIPRDVFEDELV----PLFEKIGKIYELRLMMDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLL 156 (506)
T ss_pred CCCceEEecCCCccccchhhH----HHHHhccceeeEEEeecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEe
Confidence 457999999999999999999 9999999999999998 5999999999999999999999999999886 8888
Q ss_pred EEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhh------------------------------HHHHHhcccccCC
Q 026902 83 RIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRR------------------------------AEEAQQSSMANGT 132 (231)
Q Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------------~~~~~~~~~~~~~ 132 (231)
.|.-+..+..... ++.-..+++....++...-.. ..+.... ....-
T Consensus 157 gvc~Svan~RLFi---G~IPK~k~keeIlee~~kVteGVvdVivy~~p~dk~KNRGFaFveYe~H~~Aa~aRrK-l~~g~ 232 (506)
T KOG0117|consen 157 GVCVSVANCRLFI---GNIPKTKKKEEILEEMKKVTEGVVDVIVYPSPDDKTKNRGFAFVEYESHRAAAMARRK-LMPGK 232 (506)
T ss_pred EEEEeeecceeEe---ccCCccccHHHHHHHHHhhCCCeeEEEEecCccccccccceEEEEeecchhHHHHHhh-ccCCc
Confidence 8888765543322 221111222111111111000 0000000 00011
Q ss_pred CCCCCCCCccccccc---CCCCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHH
Q 026902 133 GAQSNGGTAASFRNA---NTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMA 209 (231)
Q Consensus 133 ~~~~~~~~~~~~~~~---~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A 209 (231)
...+.....+.|+.. .....-..-+.|||+||+.++|++.|..+|++||.|..|+.++| ||||+|.+.++|.+|
T Consensus 233 ~klwgn~~tVdWAep~~e~ded~ms~VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD---YaFVHf~eR~davkA 309 (506)
T KOG0117|consen 233 IKLWGNAITVDWAEPEEEPDEDTMSKVKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD---YAFVHFAEREDAVKA 309 (506)
T ss_pred eeecCCcceeeccCcccCCChhhhhheeeeeeeccchhhhHHHHHHHHHhccceEEeecccc---eeEEeecchHHHHHH
Confidence 111222223444432 11112223467999999999999999999999999999998854 999999999999999
Q ss_pred HHHhcCCccCCCCCeEEEecc
Q 026902 210 MQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 210 ~~~lng~~i~~~~~l~V~~a~ 230 (231)
+..+||+.|+| ..|.|.+||
T Consensus 310 m~~~ngkeldG-~~iEvtLAK 329 (506)
T KOG0117|consen 310 MKETNGKELDG-SPIEVTLAK 329 (506)
T ss_pred HHHhcCceecC-ceEEEEecC
Confidence 99999999999 999999997
No 9
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=5.9e-30 Score=220.88 Aligned_cols=168 Identities=20% Similarity=0.218 Sum_probs=139.5
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHh--CCceeCCeeeEEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQM--QNFPFYDKPMRIQ 85 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l--~g~~~~g~~l~v~ 85 (231)
++++|||+|||.++++++|+ ++|+.||.|.+|.+++ +++||||+|.+.++|.+|+..+ ++..+.|++|.|.
T Consensus 1 ps~vv~V~nLp~~~te~~L~----~~f~~fG~V~~v~i~~---~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~ 73 (481)
T TIGR01649 1 PSPVVHVRNLPQDVVEADLV----EALIPFGPVSYVMMLP---GKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFN 73 (481)
T ss_pred CccEEEEcCCCCCCCHHHHH----HHHHhcCCeeEEEEEC---CCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEE
Confidence 58999999999999999999 9999999999999864 5789999999999999999864 7899999999999
Q ss_pred eccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCC
Q 026902 86 YAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLP 165 (231)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 165 (231)
|+..+...... . . + . .........+|+|+||+
T Consensus 74 ~s~~~~~~~~~---~--~---------------------------~------~----------~~~~~~~~~~v~v~nl~ 105 (481)
T TIGR01649 74 YSTSQEIKRDG---N--S---------------------------D------F----------DSAGPNKVLRVIVENPM 105 (481)
T ss_pred ecCCcccccCC---C--C---------------------------c------c----------cCCCCCceEEEEEcCCC
Confidence 98654321110 0 0 0 0 00001122468999999
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCCccCCC-CCeEEEecc
Q 026902 166 HETTSSMLEMLFQQYPGFKEVRMIEAK-PGIAFVEFEDDVQSSMAMQALQGFKITPQ-NPMAITFAK 230 (231)
Q Consensus 166 ~~~t~~~l~~~f~~~g~v~~v~~~~~~-~g~afV~f~~~~~A~~A~~~lng~~i~~~-~~l~V~~a~ 230 (231)
..+|+++|+++|+.||.|.+|.+.+++ +++|||+|.+.++|.+|+..|||..|.++ ++|+|.||+
T Consensus 106 ~~vt~~~L~~~F~~~G~V~~v~i~~~~~~~~afVef~~~~~A~~A~~~Lng~~i~~~~~~l~v~~sk 172 (481)
T TIGR01649 106 YPITLDVLYQIFNPYGKVLRIVTFTKNNVFQALVEFESVNSAQHAKAALNGADIYNGCCTLKIEYAK 172 (481)
T ss_pred CCCCHHHHHHHHhccCCEEEEEEEecCCceEEEEEECCHHHHHHHHHHhcCCcccCCceEEEEEEec
Confidence 999999999999999999999998865 37999999999999999999999999763 689999986
No 10
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.97 E-value=1.3e-29 Score=218.67 Aligned_cols=195 Identities=18% Similarity=0.324 Sum_probs=146.1
Q ss_pred CCCCEEEEeCCCC-ccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 7 PPNQTIYIKNLNE-KIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 7 ~~~~~v~v~nLp~-~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
+++++|||+|||. .+|+++|+ ++|+.||.|.+|+++++ .+|+|||+|.+.++|..|+..|||..+.|++|+|.
T Consensus 273 ~~~~~l~v~nL~~~~vt~~~L~----~lF~~yG~V~~vki~~~--~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~ 346 (481)
T TIGR01649 273 GPGSVLMVSGLHQEKVNCDRLF----NLFCVYGNVERVKFMKN--KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVC 346 (481)
T ss_pred CCCCEEEEeCCCCCCCCHHHHH----HHHHhcCCeEEEEEEeC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 4678999999997 69999999 99999999999999875 47999999999999999999999999999999999
Q ss_pred eccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCC
Q 026902 86 YAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLP 165 (231)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 165 (231)
+++.......+. .... ..... .. +-. .........+. ........+++.+|||+|||
T Consensus 347 ~s~~~~~~~~~~-~~~~-~~~~~-~~-------------d~~---~~~~~r~~~~~----~~~~~~~~~ps~~L~v~NLp 403 (481)
T TIGR01649 347 PSKQQNVQPPRE-GQLD-DGLTS-YK-------------DYS---SSRNHRFKKPG----SANKNNIQPPSATLHLSNIP 403 (481)
T ss_pred EcccccccCCCC-CcCc-CCCcc-cc-------------ccc---CCccccCCCcc----cccccccCCCCcEEEEecCC
Confidence 986543321110 0000 00000 00 000 00000000000 00011124577899999999
Q ss_pred CCCCHHHHHHHhccCCC--eeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCCccCCCC------CeEEEeccC
Q 026902 166 HETTSSMLEMLFQQYPG--FKEVRMIEAK---PGIAFVEFEDDVQSSMAMQALQGFKITPQN------PMAITFAKK 231 (231)
Q Consensus 166 ~~~t~~~l~~~f~~~g~--v~~v~~~~~~---~g~afV~f~~~~~A~~A~~~lng~~i~~~~------~l~V~~a~~ 231 (231)
.++++++|+++|+.||. +..+++.+.. +++|||+|.+.++|..|+..|||+.|.+ + .|+|+||+.
T Consensus 404 ~~~tee~L~~lF~~~G~~~i~~ik~~~~~~~~~~~gfVeF~~~e~A~~Al~~ln~~~l~~-~~~~~~~~lkv~fs~~ 479 (481)
T TIGR01649 404 LSVSEEDLKELFAENGVHKVKKFKFFPKDNERSKMGLLEWESVEDAVEALIALNHHQLNE-PNGSAPYHLKVSFSTS 479 (481)
T ss_pred CCCCHHHHHHHHHhcCCccceEEEEecCCCCcceeEEEEcCCHHHHHHHHHHhcCCccCC-CCCCccceEEEEeccC
Confidence 99999999999999998 8888887654 6899999999999999999999999998 6 499999973
No 11
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=1.6e-29 Score=222.68 Aligned_cols=178 Identities=23% Similarity=0.420 Sum_probs=147.6
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeC----Ce
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFY----DK 80 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~----g~ 80 (231)
...++|||+|||.++|+++|+ ++|+.||.|.++.+.+ ++.++|||||+|.+.++|.+|++.|+|..+. |+
T Consensus 176 ~~~~~l~V~nl~~~~tee~L~----~~F~~fG~i~~~~i~~~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~ 251 (562)
T TIGR01628 176 KKFTNLYVKNLDPSVNEDKLR----ELFAKFGEITSAAVMKDGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGK 251 (562)
T ss_pred cCCCeEEEeCCCCcCCHHHHH----HHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccce
Confidence 456789999999999999999 9999999999999887 5788999999999999999999999999999 99
Q ss_pred eeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEE
Q 026902 81 PMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILF 160 (231)
Q Consensus 81 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (231)
.+.|.++..+..+... .+..... . .. .........+||
T Consensus 252 ~l~v~~a~~k~er~~~---------~~~~~~~-~----~~----------------------------~~~~~~~~~~l~ 289 (562)
T TIGR01628 252 KLYVGRAQKRAEREAE---------LRRKFEE-L----QQ----------------------------ERKMKAQGVNLY 289 (562)
T ss_pred eeEeecccChhhhHHH---------HHhhHHh-h----hh----------------------------hhhcccCCCEEE
Confidence 9999887654432110 0000000 0 00 001122455699
Q ss_pred ecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 161 IQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 161 v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
|+||+..+++++|+++|++||.|.++.++.+. +|+|||+|.+.++|.+|+..|||..++| ++|.|.+|++
T Consensus 290 V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~g-k~l~V~~a~~ 363 (562)
T TIGR01628 290 VKNLDDTVTDEKLRELFSECGEITSAKVMLDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGG-KPLYVALAQR 363 (562)
T ss_pred EeCCCCccCHHHHHHHHHhcCCeEEEEEEECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCC-ceeEEEeccC
Confidence 99999999999999999999999999998863 6899999999999999999999999999 9999999974
No 12
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.97 E-value=1.6e-29 Score=217.94 Aligned_cols=212 Identities=21% Similarity=0.348 Sum_probs=144.7
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeC-CeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFY-DKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~-g~~l~v 84 (231)
..++|||+|||.+++|++|+ ++|++||.|.+++|++ ++.++|||||+|.+.++|++|+..||+..+. |+.|.|
T Consensus 57 ~~~~lFVgnLp~~~tEd~L~----~~F~~~G~I~~vrl~~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V 132 (578)
T TIGR01648 57 RGCEVFVGKIPRDLYEDELV----PLFEKAGPIYELRLMMDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGV 132 (578)
T ss_pred CCCEEEeCCCCCCCCHHHHH----HHHHhhCCEEEEEEEECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccc
Confidence 36899999999999999999 9999999999999987 5889999999999999999999999998885 777777
Q ss_pred EeccCccchhhhcCCCcchhhhhHHHHHHHHHhhh---------------------------HHHHHhccccc-CCCCCC
Q 026902 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRR---------------------------AEEAQQSSMAN-GTGAQS 136 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------------------~~~~~~~~~~~-~~~~~~ 136 (231)
..+........ +++..........+....... ......+.... ......
T Consensus 133 ~~S~~~~rLFV---gNLP~~~TeeeL~eeFskv~egvv~vIv~~~~~~kgKnRGFAFVeF~s~edAa~AirkL~~gki~l 209 (578)
T TIGR01648 133 CISVDNCRLFV---GGIPKNKKREEILEEFSKVTEGVVDVIVYHSAADKKKNRGFAFVEYESHRAAAMARRKLMPGRIQL 209 (578)
T ss_pred cccccCceeEe---ecCCcchhhHHHHHHhhcccCCceEEEEeccccccCccCceEEEEcCCHHHHHHHHHHhhccceEe
Confidence 66543221110 011111111111111100000 00000000000 000000
Q ss_pred CCCCc-cccccc---CCCCCCCCCCEEEecCCCCCCCHHHHHHHhccC--CCeeEEEEeeCCCcEEEEEecCHHHHHHHH
Q 026902 137 NGGTA-ASFRNA---NTQETAAPNNILFIQNLPHETTSSMLEMLFQQY--PGFKEVRMIEAKPGIAFVEFEDDVQSSMAM 210 (231)
Q Consensus 137 ~~~~~-~~~~~~---~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--g~v~~v~~~~~~~g~afV~f~~~~~A~~A~ 210 (231)
.+... ..++.. .........++|||+|||.++++++|+++|++| |.|..|.+++ +||||+|.+.++|.+|+
T Consensus 210 ~Gr~I~VdwA~p~~~~d~~~~~~~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~r---gfAFVeF~s~e~A~kAi 286 (578)
T TIGR01648 210 WGHVIAVDWAEPEEEVDEDVMAKVKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIR---DYAFVHFEDREDAVKAM 286 (578)
T ss_pred cCceEEEEeecccccccccccccccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeec---CeEEEEeCCHHHHHHHH
Confidence 01110 111110 111122345789999999999999999999999 9999998764 69999999999999999
Q ss_pred HHhcCCccCCCCCeEEEecc
Q 026902 211 QALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 211 ~~lng~~i~~~~~l~V~~a~ 230 (231)
..|||..|.+ +.|+|+||+
T Consensus 287 ~~lnG~~i~G-r~I~V~~Ak 305 (578)
T TIGR01648 287 DELNGKELEG-SEIEVTLAK 305 (578)
T ss_pred HHhCCCEECC-EEEEEEEcc
Confidence 9999999999 999999986
No 13
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.97 E-value=2.8e-29 Score=221.25 Aligned_cols=156 Identities=20% Similarity=0.377 Sum_probs=139.1
Q ss_pred EEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026902 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYA 87 (231)
Q Consensus 11 ~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~ 87 (231)
+|||+|||.++||++|+ ++|+.||.|.+|++.+ +++++|||||+|.+.++|.+|+..+|+..+.|++|+|.|+
T Consensus 2 sl~VgnLp~~vte~~L~----~~F~~~G~v~~v~v~~d~~t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk~i~i~~s 77 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLY----DLFKPFGPVLSVRVCRDSVTRRSLGYGYVNFQNPADAERALETMNFKRLGGKPIRIMWS 77 (562)
T ss_pred eEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeeEEeecc
Confidence 79999999999999999 9999999999999988 5789999999999999999999999999999999999986
Q ss_pred cCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCCC
Q 026902 88 KSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHE 167 (231)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~ 167 (231)
...... ......+|||+|||.+
T Consensus 78 ~~~~~~----------------------------------------------------------~~~~~~~vfV~nLp~~ 99 (562)
T TIGR01628 78 QRDPSL----------------------------------------------------------RRSGVGNIFVKNLDKS 99 (562)
T ss_pred cccccc----------------------------------------------------------cccCCCceEEcCCCcc
Confidence 422110 0012345999999999
Q ss_pred CCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 168 TTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 168 ~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
+++++|.++|++||.|.+|.+..+ ++|||||+|.+.++|..|+..|||..+++ +.|.|...
T Consensus 100 ~~~~~L~~~F~~~G~i~~~~i~~~~~g~skg~afV~F~~~e~A~~Ai~~lng~~~~~-~~i~v~~~ 164 (562)
T TIGR01628 100 VDNKALFDTFSKFGNILSCKVATDENGKSRGYGFVHFEKEESAKAAIQKVNGMLLND-KEVYVGRF 164 (562)
T ss_pred CCHHHHHHHHHhcCCcceeEeeecCCCCcccEEEEEECCHHHHHHHHHHhcccEecC-ceEEEecc
Confidence 999999999999999999999875 36899999999999999999999999999 99998754
No 14
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=2.1e-28 Score=213.51 Aligned_cols=186 Identities=17% Similarity=0.263 Sum_probs=136.8
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccC------------CCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHh
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQY------------GRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQM 72 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~------------g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l 72 (231)
.....++|||||||+.+|+++|+ ++|..+ +.|..+.+ +..+|||||+|.+.++|..|+. |
T Consensus 171 ~~~~~r~lyVgnLp~~~t~~~l~----~~F~~~~~~~~~~~~~~~~~v~~~~~---~~~kg~afVeF~~~e~A~~Al~-l 242 (509)
T TIGR01642 171 ATRQARRLYVGGIPPEFVEEAVV----DFFNDLMIATGYHKAEDGKHVSSVNI---NKEKNFAFLEFRTVEEATFAMA-L 242 (509)
T ss_pred CCccccEEEEeCCCCCCCHHHHH----HHHHHHHHhcCCCCCCCCCceEEEEE---CCCCCEEEEEeCCHHHHhhhhc-C
Confidence 44568999999999999999999 666542 34555555 6679999999999999999996 9
Q ss_pred CCceeCCeeeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCC
Q 026902 73 QNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQET 152 (231)
Q Consensus 73 ~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 152 (231)
+|..|.|++|+|................. ...+....... .........
T Consensus 243 ~g~~~~g~~l~v~r~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~--~~~~~~~~~ 291 (509)
T TIGR01642 243 DSIIYSNVFLKIRRPHDYIPVPQITPEVS-----------------------------QKNPDDNAKNV--EKLVNSTTV 291 (509)
T ss_pred CCeEeeCceeEecCccccCCccccCCCCC-----------------------------CCCCccccccc--ccccccccC
Confidence 99999999999976532211000000000 00000000000 000011112
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
....++|||+|||..+++++|.++|+.||.|..+.++.+ .+|||||+|.+.++|..|+..|||..|++ +.|.|.
T Consensus 292 ~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~-~~l~v~ 370 (509)
T TIGR01642 292 LDSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGD-NKLHVQ 370 (509)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEE
Confidence 235678999999999999999999999999999999875 47999999999999999999999999999 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
+|.
T Consensus 371 ~a~ 373 (509)
T TIGR01642 371 RAC 373 (509)
T ss_pred ECc
Confidence 974
No 15
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=2.1e-28 Score=202.17 Aligned_cols=181 Identities=23% Similarity=0.386 Sum_probs=147.3
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
++.||||++||+.++.++|. ++|+..|+|..+.++. ++.++||+||+|.-.|++++|+...++..|.||.|.|
T Consensus 4 ~g~TlfV~~lp~~~~~~qL~----e~FS~vGPik~~~vVt~~gs~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v 79 (678)
T KOG0127|consen 4 SGATLFVSRLPFSSTGEQLE----EFFSYVGPIKHAVVVTNKGSSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNV 79 (678)
T ss_pred CCceEEEecCCCccchhHHH----HhhhcccCcceeEEecCCCcccccCccceeeehHhHHHHHHHHhhcCcccceeccc
Confidence 44899999999999999999 9999999999998887 4568999999999999999999999999999999999
Q ss_pred EeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCccccccc--CCCCCCCCCCEEEec
Q 026902 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNA--NTQETAAPNNILFIQ 162 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~v~ 162 (231)
.+++.+....... ...+...+. + ..+. .......+.+.|+|+
T Consensus 80 ~~A~~R~r~e~~~------~~e~~~veK---------------------------~---~~q~~~~k~~v~~~k~rLIIR 123 (678)
T KOG0127|consen 80 DPAKKRARSEEVE------KGENKAVEK---------------------------P---IEQKRPTKAKVDLPKWRLIIR 123 (678)
T ss_pred ccccccccchhcc------cccchhhhc---------------------------c---cccCCcchhhccCccceEEee
Confidence 9987553321100 000000000 0 0000 011123457889999
Q ss_pred CCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 163 NLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 163 nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
|||+++.+.||..+|++||.|..|.|++.. .|||||+|.+..+|..|+..+||..|.| ++|.|+||
T Consensus 124 NLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~g-R~VAVDWA 193 (678)
T KOG0127|consen 124 NLPFKCKKPDLKNVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDG-RPVAVDWA 193 (678)
T ss_pred cCCcccCcHHHHHHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecC-ceeEEeee
Confidence 999999999999999999999999999742 5999999999999999999999999999 99999998
No 16
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.3e-28 Score=198.35 Aligned_cols=161 Identities=20% Similarity=0.470 Sum_probs=139.8
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCc-eeCC--e
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNF-PFYD--K 80 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~-~~~g--~ 80 (231)
.+.-.+|||-+|..++|.||| ++|++||.|.+|.+++ ++.++|||||.|.+.++|.+|+.+||+. .|.| .
T Consensus 32 ~~~vKlfVgqIprt~sE~dlr----~lFe~yg~V~einl~kDk~t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~ 107 (510)
T KOG0144|consen 32 GSAVKLFVGQIPRTASEKDLR----ELFEKYGNVYEINLIKDKSTGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHH 107 (510)
T ss_pred chhhhheeccCCccccHHHHH----HHHHHhCceeEEEeecccccCcccceEEEEeccHHHHHHHHHHhhcccccCCCCc
Confidence 445689999999999999999 9999999999999998 6889999999999999999999999884 5555 5
Q ss_pred eeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEE
Q 026902 81 PMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILF 160 (231)
Q Consensus 81 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (231)
+|.|.|+....++. ...+.||
T Consensus 108 pvqvk~Ad~E~er~-----------------------------------------------------------~~e~KLF 128 (510)
T KOG0144|consen 108 PVQVKYADGERERI-----------------------------------------------------------VEERKLF 128 (510)
T ss_pred ceeecccchhhhcc-----------------------------------------------------------ccchhhh
Confidence 78898886333211 1345699
Q ss_pred ecCCCCCCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCC--CCCeEEEecc
Q 026902 161 IQNLPHETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITP--QNPMAITFAK 230 (231)
Q Consensus 161 v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~--~~~l~V~~a~ 230 (231)
|+-|+..+||.|++.+|++||.|++|+|.++ +||+|||+|++.+.|..|+..|||..-.. ..+|-|.||-
T Consensus 129 vg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFAD 204 (510)
T KOG0144|consen 129 VGMLSKQCTENEVREIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFAD 204 (510)
T ss_pred hhhccccccHHHHHHHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecc
Confidence 9999999999999999999999999999996 48999999999999999999999954333 3899999983
No 17
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.96 E-value=2.4e-27 Score=206.90 Aligned_cols=186 Identities=17% Similarity=0.258 Sum_probs=141.1
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
...++|||+|||..+++++|+ ++|..||.|..+.+++ +|.++|||||+|.+.++|..|+..|||..+.|+.|.
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~~~~~~~~~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~ 368 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIK----ELLESFGDLKAFNLIKDIATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLH 368 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 346899999999999999999 9999999999998876 588999999999999999999999999999999999
Q ss_pred EEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecC
Q 026902 84 IQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQN 163 (231)
Q Consensus 84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 163 (231)
|.++............. .. .+. .. ...............++.+|+|.|
T Consensus 369 v~~a~~~~~~~~~~~~~----~~------------------~~~--------~~--~~~~~~~~~~~~~~~~s~v~~l~N 416 (509)
T TIGR01642 369 VQRACVGANQATIDTSN----GM------------------APV--------TL--LAKALSQSILQIGGKPTKVVQLTN 416 (509)
T ss_pred EEECccCCCCCCccccc----cc------------------ccc--------cc--ccccchhhhccccCCCceEEEecc
Confidence 99985432211000000 00 000 00 000000000111234678899999
Q ss_pred CCCCC----------CHHHHHHHhccCCCeeEEEEeeC--------CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 164 LPHET----------TSSMLEMLFQQYPGFKEVRMIEA--------KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 164 lp~~~----------t~~~l~~~f~~~g~v~~v~~~~~--------~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
+.... ..++|+++|++||.|..|.|++. ..|+|||+|.+.++|+.|+..|||..|+| +.|.
T Consensus 417 ~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr~~~g-r~v~ 495 (509)
T TIGR01642 417 LVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGRKFND-RVVV 495 (509)
T ss_pred CCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCCEECC-eEEE
Confidence 96421 23689999999999999999864 24899999999999999999999999999 9999
Q ss_pred EEec
Q 026902 226 ITFA 229 (231)
Q Consensus 226 V~~a 229 (231)
|.|.
T Consensus 496 ~~~~ 499 (509)
T TIGR01642 496 AAFY 499 (509)
T ss_pred EEEe
Confidence 9985
No 18
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=197.85 Aligned_cols=216 Identities=25% Similarity=0.400 Sum_probs=148.4
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
--+|.|+|||+.+.+.+|+ .+|+.||.|.+|.|++ +|...|||||+|.+..+|.+|+..+||..|.||+|.|.|
T Consensus 117 k~rLIIRNLPf~~k~~dLk----~vFs~~G~V~Ei~IP~k~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDW 192 (678)
T KOG0127|consen 117 KWRLIIRNLPFKCKKPDLK----NVFSNFGKVVEIVIPRKKDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDW 192 (678)
T ss_pred cceEEeecCCcccCcHHHH----HHHhhcceEEEEEcccCCCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEee
Confidence 4679999999999999999 9999999999999998 677889999999999999999999999999999999999
Q ss_pred ccCccchhhhcCCCcchhhhhHHHHHH---------------HHHhhhHHHHHhc----------cccc-CCCCC--CCC
Q 026902 87 AKSKSDCVAKEDGSFVPREKKKKQEEK---------------AERKRRAEEAQQS----------SMAN-GTGAQ--SNG 138 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~----------~~~~-~~~~~--~~~ 138 (231)
|.++..+....+..-.+..+....+.. ........+..+. .... +.... +.+
T Consensus 193 AV~Kd~ye~ta~~~~~s~Kk~~~eEed~e~~~d~~~~~~~Ed~e~d~edeEe~D~~se~~ee~~~~Eee~~~vDd~e~S~ 272 (678)
T KOG0127|consen 193 AVDKDTYEDTAHEEKQSLKKAVKEEEDKEADEDDGKDFDEEDGEEDSEDEEETDGNSEAFEEGEESEEEEDDVDDEESSG 272 (678)
T ss_pred ecccccccccchhhhhhhhhccchhhhcccccccccccchhcccccccccccccccchhhhccccccccccccccccccc
Confidence 988766533111110000000000000 0000000000000 0000 00000 001
Q ss_pred CCcccc--cccCCCCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHH
Q 026902 139 GTAASF--RNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQ 211 (231)
Q Consensus 139 ~~~~~~--~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~ 211 (231)
...... +.........-..++||+|||+++|+++|.++|++||.|.++.++.+ +.|+|||.|.++..|++||.
T Consensus 273 ~~~~~k~~q~k~~~en~~~~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~T~~skGtAFv~Fkt~~~~~~ci~ 352 (678)
T KOG0127|consen 273 KKESDKKAQNKTTRENITEGKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKDTGHSKGTAFVKFKTQIAAQNCIE 352 (678)
T ss_pred cCcccchhccccccccccccceEEEecCCccccHHHHHHHHHhhccceeEEEEeccCCCCcccceEEEeccHHHHHHHHH
Confidence 100000 00011223334589999999999999999999999999999999875 37999999999999999998
Q ss_pred Hh-----cC-CccCCCCCeEEEec
Q 026902 212 AL-----QG-FKITPQNPMAITFA 229 (231)
Q Consensus 212 ~l-----ng-~~i~~~~~l~V~~a 229 (231)
.- .| .-++| +.|+|..|
T Consensus 353 ~Aspa~e~g~~ll~G-R~Lkv~~A 375 (678)
T KOG0127|consen 353 AASPASEDGSVLLDG-RLLKVTLA 375 (678)
T ss_pred hcCccCCCceEEEec-cEEeeeec
Confidence 76 23 56777 99999875
No 19
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.95 E-value=1.3e-26 Score=175.96 Aligned_cols=218 Identities=20% Similarity=0.371 Sum_probs=159.2
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
...+.|.|..||..+|++|+| .+|+..|+|++|++++ +|.+-||+||.|-++++|.+|+..|||..+..+.|+
T Consensus 39 ~skTNLIvNYLPQ~MTqdE~r----SLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIK 114 (360)
T KOG0145|consen 39 ESKTNLIVNYLPQNMTQDELR----SLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIK 114 (360)
T ss_pred cccceeeeeecccccCHHHHH----HHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeeccceEE
Confidence 345778999999999999999 9999999999999999 699999999999999999999999999999999999
Q ss_pred EEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHH---------------------------------------
Q 026902 84 IQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQ--------------------------------------- 124 (231)
Q Consensus 84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------------------- 124 (231)
|.|+.+.++... ...-+++...+-..+++++.-..+..+.
T Consensus 115 VSyARPSs~~Ik-~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqvtg~srGVgFiRFDKr~EAe~AIk~lNG~~ 193 (360)
T KOG0145|consen 115 VSYARPSSDSIK-DANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQVTGLSRGVGFIRFDKRIEAEEAIKGLNGQK 193 (360)
T ss_pred EEeccCChhhhc-ccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcccceecceeEEEecchhHHHHHHHhccCCC
Confidence 999988766433 2222333222222222222211111000
Q ss_pred hccc--------ccCC--------------CCCCC-C---------------CCc----cccc-----------ccCCCC
Q 026902 125 QSSM--------ANGT--------------GAQSN-G---------------GTA----ASFR-----------NANTQE 151 (231)
Q Consensus 125 ~~~~--------~~~~--------------~~~~~-~---------------~~~----~~~~-----------~~~~~~ 151 (231)
++.. ++.+ .+... + ..+ ..+. ...-..
T Consensus 194 P~g~tepItVKFannPsq~t~~a~ls~ly~sp~rr~~Gp~hh~~~r~r~~~~~~~~~~~~rfsP~~~d~m~~l~~~~lp~ 273 (360)
T KOG0145|consen 194 PSGCTEPITVKFANNPSQKTNQALLSQLYQSPARRYGGPMHHQAQRFRLDNLLNPHAAQARFSPMTIDGMSGLAGVNLPG 273 (360)
T ss_pred CCCCCCCeEEEecCCcccccchhhhHHhhcCccccCCCcccchhhhhccccccchhhhhccCCCccccccceeeeeccCC
Confidence 0000 0000 00000 0 000 0000 001222
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
.....+.|||-||.++..+.-|-++|.+||.|..|++++| .+||+||.+.+.++|..|+..|||+.+++ +.|.|
T Consensus 274 ~~~~g~ciFvYNLspd~de~~LWQlFgpFGAv~nVKvirD~ttnkCKGfgFVtMtNYdEAamAi~sLNGy~lg~-rvLQV 352 (360)
T KOG0145|consen 274 GPGGGWCIFVYNLSPDADESILWQLFGPFGAVTNVKVIRDFTTNKCKGFGFVTMTNYDEAAMAIASLNGYRLGD-RVLQV 352 (360)
T ss_pred CCCCeeEEEEEecCCCchHhHHHHHhCcccceeeEEEEecCCcccccceeEEEecchHHHHHHHHHhcCccccc-eEEEE
Confidence 3445789999999999999999999999999999999996 47999999999999999999999999999 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
+|..
T Consensus 353 sFKt 356 (360)
T KOG0145|consen 353 SFKT 356 (360)
T ss_pred EEec
Confidence 9963
No 20
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.95 E-value=9.9e-27 Score=200.52 Aligned_cols=217 Identities=20% Similarity=0.325 Sum_probs=145.3
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
+..++|||+|||..+++++|+ ++|+.||.|..|.+.+ +|.++|||||+|.+.++|.+|+..|||..+.|++|.
T Consensus 184 p~~~~l~v~nl~~~~te~~l~----~~f~~~G~i~~v~~~~d~~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~ 259 (457)
T TIGR01622 184 PNFLKLYVGNLHFNITEQELR----QIFEPFGDIEDVQLHRDPETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIK 259 (457)
T ss_pred CCCCEEEEcCCCCCCCHHHHH----HHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEE
Confidence 346899999999999999999 9999999999999987 468899999999999999999999999999999999
Q ss_pred EEeccCccchhhhcCCCcc------------hhhhhHHHHHHHHHhhhH-HHHHhccccc--------------CCCCCC
Q 026902 84 IQYAKSKSDCVAKEDGSFV------------PREKKKKQEEKAERKRRA-EEAQQSSMAN--------------GTGAQS 136 (231)
Q Consensus 84 v~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~-~~~~~~~~~~--------------~~~~~~ 136 (231)
|.|+......... ...+. .......+.......... ....++.... ...+..
T Consensus 260 v~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 338 (457)
T TIGR01622 260 VGYAQDSTYLLDA-ANTFEDIDKQQQMGKNLNTEEREQLMEKLDRDDGDGGLLIPGTGSKIALMQKLQRDGIIDPNIPSR 338 (457)
T ss_pred EEEccCCCccccc-hhhhccccccccCCcCCCccchHHHHHhhccCCCCccccCCCccchhhhhcccccccccccccccc
Confidence 9997643221110 00000 000000000000000000 0000000000 000000
Q ss_pred C--CCCccccccc--CCCCCCCCCCEEEecCCCCCCC----------HHHHHHHhccCCCeeEEEEe-eCCCcEEEEEec
Q 026902 137 N--GGTAASFRNA--NTQETAAPNNILFIQNLPHETT----------SSMLEMLFQQYPGFKEVRMI-EAKPGIAFVEFE 201 (231)
Q Consensus 137 ~--~~~~~~~~~~--~~~~~~~~~~~l~v~nlp~~~t----------~~~l~~~f~~~g~v~~v~~~-~~~~g~afV~f~ 201 (231)
. +.......+. .......++.+|+|.||....+ .+||.+.|++||.|..+.+. ....|++||+|.
T Consensus 339 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~n~~~~~~~~~~~~~~~~~~dv~~e~~k~G~v~~v~v~~~~~~G~~fV~F~ 418 (457)
T TIGR01622 339 YATGALAIMARNSFVPSTNNNLATTCLVLSNMFDPATEEEPNFDNEILDDVKEECSKYGGVVHIYVDTKNSAGKIYLKFS 418 (457)
T ss_pred ccccccccccCCCCCCcccCCCCCcEEEEecCCCCcccccchHHHHHHHHHHHHHHhcCCeeEEEEeCCCCceeEEEEEC
Confidence 0 0000000000 1111335678899999965544 37899999999999999998 445799999999
Q ss_pred CHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 202 DDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 202 ~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
++++|.+|+..|||..|+| +.|.|.|.
T Consensus 419 ~~e~A~~A~~~lnGr~f~g-r~i~~~~~ 445 (457)
T TIGR01622 419 SVDAALAAFQALNGRYFGG-KMITAAFV 445 (457)
T ss_pred CHHHHHHHHHHhcCcccCC-eEEEEEEE
Confidence 9999999999999999999 99999985
No 21
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.95 E-value=3.3e-27 Score=170.17 Aligned_cols=163 Identities=23% Similarity=0.413 Sum_probs=141.5
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
+--...+||||||+..++++-|. ++|-+.|+|.++++++ +...+|||||+|.+.|+|+-|++-||...++|++
T Consensus 5 ~rnqd~tiyvgnld~kvs~~~l~----EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYgrp 80 (203)
T KOG0131|consen 5 ERNQDATLYVGNLDEKVSEELLY----ELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRP 80 (203)
T ss_pred ccCCCceEEEecCCHHHHHHHHH----HHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcCce
Confidence 34457899999999999999887 9999999999999998 5778999999999999999999999999999999
Q ss_pred eEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEe
Q 026902 82 MRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFI 161 (231)
Q Consensus 82 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 161 (231)
|+|..+..... ....+..|||
T Consensus 81 Irv~kas~~~~-----------------------------------------------------------nl~vganlfv 101 (203)
T KOG0131|consen 81 IRVNKASAHQK-----------------------------------------------------------NLDVGANLFV 101 (203)
T ss_pred eEEEecccccc-----------------------------------------------------------cccccccccc
Confidence 99987642111 1123456999
Q ss_pred cCCCCCCCHHHHHHHhccCCCeeE-EEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 162 QNLPHETTSSMLEMLFQQYPGFKE-VRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 162 ~nlp~~~t~~~l~~~f~~~g~v~~-v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
+||.+.+++.-|.+.|+.||.+.. -.++++ ++|+|||.|...+.+.+|+.++||.-++. +++.|+++.|
T Consensus 102 gNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~n-r~itv~ya~k 176 (203)
T KOG0131|consen 102 GNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPDTGNPKGFGFINYASFEASDAAIGSMNGQYLCN-RPITVSYAFK 176 (203)
T ss_pred cccCcchhHHHHHHHHHhccccccCCcccccccCCCCCCCeEEechhHHHHHHHHHHhccchhcC-CceEEEEEEe
Confidence 999999999999999999999866 233332 46899999999999999999999999999 9999999875
No 22
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.94 E-value=2.7e-26 Score=174.80 Aligned_cols=219 Identities=19% Similarity=0.358 Sum_probs=154.0
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCc-eeCC--ee
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNF-PFYD--KP 81 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~-~~~g--~~ 81 (231)
..++.||||.|...-.|+|++ .+|..||.|++|.+.+ +|.++|||||.|.+.-+|..||..|||. .+.| ..
T Consensus 17 ~~drklfvgml~kqq~e~dvr----rlf~pfG~~~e~tvlrg~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSS 92 (371)
T KOG0146|consen 17 GDDRKLFVGMLNKQQSEDDVR----RLFQPFGNIEECTVLRGPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSS 92 (371)
T ss_pred ccchhhhhhhhcccccHHHHH----HHhcccCCcceeEEecCCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccc
Confidence 358999999999999999999 9999999999999998 7999999999999999999999999994 4555 57
Q ss_pred eEEEeccCccchhhhcCCC-------cchhh--------h-hHHHHHHHH---Hh----hhH-------HHHH-------
Q 026902 82 MRIQYAKSKSDCVAKEDGS-------FVPRE--------K-KKKQEEKAE---RK----RRA-------EEAQ------- 124 (231)
Q Consensus 82 l~v~~~~~~~~~~~~~~~~-------~~~~~--------~-~~~~~~~~~---~~----~~~-------~~~~------- 124 (231)
|.|.|+....++..++-+. +.+.. . ....+++.. .. ..+ .+..
T Consensus 93 LVVK~ADTdkER~lRRMQQma~qlGm~~Pl~l~~g~~~ay~qalmQqQa~~~at~~~~~L~p~~~~~~~~mQ~~aA~~an 172 (371)
T KOG0146|consen 93 LVVKFADTDKERTLRRMQQMAGQLGMFNPLALPFGAYGAYAQALMQQQAALLATVAGPYLSPMAAFAAAQMQQMAALNAN 172 (371)
T ss_pred eEEEeccchHHHHHHHHHHHHHHhcccCccccccchhHHHHHHHHHHHHHHHHhhcccccChhhhhHHHHHHHHHHHhhc
Confidence 9999998877764433211 11100 0 000000000 00 000 0000
Q ss_pred ----hccccc------------------C--------C-CCCCCCCC-----------------c---------------
Q 026902 125 ----QSSMAN------------------G--------T-GAQSNGGT-----------------A--------------- 141 (231)
Q Consensus 125 ----~~~~~~------------------~--------~-~~~~~~~~-----------------~--------------- 141 (231)
.|..+. + + .+...|.+ +
T Consensus 173 gl~A~Pv~p~s~~~~pp~~~a~~~~~~~A~~g~ng~~~l~~q~~gqpa~~~vy~ng~~pypaQsp~va~~lq~a~~g~~~ 252 (371)
T KOG0146|consen 173 GLAAAPVTPASGGSTPPGIGATAVPGIPAPIGVNGFTGLPPQPNGQPAAEAVYANGLHPYPAQSPTVADPLQQAYAGVQQ 252 (371)
T ss_pred ccccCCcCccccCCCCCcccccccCCcccccccccccCCCCCCCCCcchhHHhhcCCccCCCCCccccchhhhhhhhHHH
Confidence 000000 0 0 00000000 0
Q ss_pred -------------ccccc-----cCCCCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEE
Q 026902 142 -------------ASFRN-----ANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFV 198 (231)
Q Consensus 142 -------------~~~~~-----~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV 198 (231)
.+..+ .......+.++.|||-.||....+.+|.+.|-.||.|.+.+++.|+ +.|+||
T Consensus 253 Y~Aaypaays~v~~~~pq~p~~~~qqqreGPeGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRATNQSKCFGFV 332 (371)
T KOG0146|consen 253 YAAAYPAAYSPISQAFPQPPPLLPQQQREGPEGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRATNQSKCFGFV 332 (371)
T ss_pred HhhhcchhhhhhhhcCCCCcchhhhhhhcCCCcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhccccccceeeE
Confidence 00000 0112256678889999999999999999999999999999888764 689999
Q ss_pred EecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 199 EFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 199 ~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.|+|+.+|+.||+.|||+.|+. ++|+|.+.|
T Consensus 333 SfDNp~SaQaAIqAMNGFQIGM-KRLKVQLKR 363 (371)
T KOG0146|consen 333 SFDNPASAQAAIQAMNGFQIGM-KRLKVQLKR 363 (371)
T ss_pred ecCCchhHHHHHHHhcchhhhh-hhhhhhhcC
Confidence 9999999999999999999999 999999876
No 23
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.93 E-value=7.1e-26 Score=174.30 Aligned_cols=146 Identities=23% Similarity=0.453 Sum_probs=135.3
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKS 89 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~~ 89 (231)
-.|||||||..+++.+|+ .+|++||+|.+|.|+ +.||||+.++...|..|++-|||..+.|..|.|+-++.
T Consensus 3 ~KLFIGNLp~~~~~~elr----~lFe~ygkVlECDIv-----KNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSks 73 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELR----SLFEQYGKVLECDIV-----KNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKS 73 (346)
T ss_pred cchhccCCCcccchHHHH----HHHHhhCceEeeeee-----cccceEEeecccccHHHHhhcccceecceEEEEEeccc
Confidence 368999999999999999 999999999999884 77999999999999999999999999999999988765
Q ss_pred ccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCCCCC
Q 026902 90 KSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169 (231)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t 169 (231)
++. .+.+|+|+||.+.++
T Consensus 74 Ksk--------------------------------------------------------------~stkl~vgNis~tct 91 (346)
T KOG0109|consen 74 KSK--------------------------------------------------------------ASTKLHVGNISPTCT 91 (346)
T ss_pred cCC--------------------------------------------------------------CccccccCCCCcccc
Confidence 532 556699999999999
Q ss_pred HHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 170 SSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 170 ~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.++|+..|++||+|.++.|++ +|+||+|+..++|..|+..|||..|.| ++++|+++.
T Consensus 92 n~ElRa~fe~ygpviecdivk---dy~fvh~d~~eda~~air~l~~~~~~g-k~m~vq~st 148 (346)
T KOG0109|consen 92 NQELRAKFEKYGPVIECDIVK---DYAFVHFDRAEDAVEAIRGLDNTEFQG-KRMHVQLST 148 (346)
T ss_pred CHHHhhhhcccCCceeeeeec---ceeEEEEeeccchHHHHhccccccccc-ceeeeeeec
Confidence 999999999999999999975 689999999999999999999999999 999999874
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.93 E-value=7.7e-25 Score=176.64 Aligned_cols=219 Identities=21% Similarity=0.330 Sum_probs=152.3
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCC-ceeCC--ee
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQN-FPFYD--KP 81 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g-~~~~g--~~ 81 (231)
...+.||||.|+..+||.|++ ++|++||.|++|+|.+ ++.+||||||.|.+.|.|..||++||| ..+.| .+
T Consensus 122 ~~e~KLFvg~lsK~~te~evr----~iFs~fG~Ied~~ilrd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~P 197 (510)
T KOG0144|consen 122 VEERKLFVGMLSKQCTENEVR----EIFSRFGHIEDCYILRDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQP 197 (510)
T ss_pred ccchhhhhhhccccccHHHHH----HHHHhhCccchhhheecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCc
Confidence 347899999999999999999 9999999999999999 689999999999999999999999999 45655 58
Q ss_pred eEEEeccCccchhhhcCCCcchhh--------------------------------------------hhHHHHHHHHHh
Q 026902 82 MRIQYAKSKSDCVAKEDGSFVPRE--------------------------------------------KKKKQEEKAERK 117 (231)
Q Consensus 82 l~v~~~~~~~~~~~~~~~~~~~~~--------------------------------------------~~~~~~~~~~~~ 117 (231)
|.|.|+.++.++..+.-....+.. ............
T Consensus 198 LVVkFADtqkdk~~~~lqq~~~~~~qql~~~~~~~n~~~~~~l~~~~~~~~Qq~~~sqn~g~l~g~~~L~~l~a~~~qq~ 277 (510)
T KOG0144|consen 198 LVVKFADTQKDKDGKRLQQLNPALLQQLGNGQNPQNLASLGALSNGYQGPQQQTQQSQNVGTLGGLPPLGPLNATQLQQA 277 (510)
T ss_pred eEEEecccCCCchHHHHHhhhHHHHHHhcCCCCccchhhhhccCcccCchhhhccccCCCcccccccCCCCcchhHHHHH
Confidence 999999887665332211100000 000000000000
Q ss_pred hhHHHHHhcc-------cc-------------------c----------------------CCCCCCC------------
Q 026902 118 RRAEEAQQSS-------MA-------------------N----------------------GTGAQSN------------ 137 (231)
Q Consensus 118 ~~~~~~~~~~-------~~-------------------~----------------------~~~~~~~------------ 137 (231)
.-......+. .+ . +..+..+
T Consensus 278 ~~~~~~~ta~q~~~~s~q~~pl~~qts~~~~~~~~~~~~~~ss~~~~s~~~~aq~~~~q~~p~t~~~~n~~~~~a~a~~~ 357 (510)
T KOG0144|consen 278 AALAAAATAAQKTASSTQGLPLRTQTSFPGSQTSPQSASAPSSSLSTSQNPLAQLGARQTFPGTPANYNLAGGMAGAGTT 357 (510)
T ss_pred HHhhhhcccccCCCCCcccCccccccCCccccCCCccccCccccCcccccchhhhhHhhcCCCCchhccccccccccccc
Confidence 0000000000 00 0 0000000
Q ss_pred -------------CCCc-----------------------cc------------ccccCCCCCCCCCCEEEecCCCCCCC
Q 026902 138 -------------GGTA-----------------------AS------------FRNANTQETAAPNNILFIQNLPHETT 169 (231)
Q Consensus 138 -------------~~~~-----------------------~~------------~~~~~~~~~~~~~~~l~v~nlp~~~t 169 (231)
+.++ .+ ..........+.+..+||.+||.+.-
T Consensus 358 sp~aa~~~~lq~~~ltp~~~~~~~~~tQa~q~~~q~a~~a~~~l~~q~~~~qq~~~~~~~q~eGpeGanlfiyhlPqefg 437 (510)
T KOG0144|consen 358 SPVAASLANLQQIGLTPFAGAAALDHTQAMQQYAQSANLAAPGLVGQQATTQQAQMVGNGQVEGPEGANLFIYHLPQEFG 437 (510)
T ss_pred CcccccccccccccCCChhhhhhHhHHHhhhHhhhhhhhcccchhhhhHhhhhhhcccCccccCCCccceeeeeCchhhh
Confidence 0000 00 00012333556667799999999999
Q ss_pred HHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 170 SSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 170 ~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
+.||...|..||.|++.++.-++ +.|+||.|++..+|++||..|||+.|+. ++|+|.+++
T Consensus 438 dq~l~~~f~pfG~Vlsakvfidk~tnlskcfgfvSyen~~sa~~aI~amngfQig~-KrlkVQlk~ 502 (510)
T KOG0144|consen 438 DQDLIATFQPFGGVLSAKVFIDKVTNLSKCFGFVSYENAQSAQNAISAMNGFQIGS-KRLKVQLKR 502 (510)
T ss_pred hHHHHHHhccccceeEEEEEEecccCHhhhcCcccccchhhhHHHHHHhcchhhcc-ccceEEeee
Confidence 99999999999999998887763 6799999999999999999999999999 999999876
No 25
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.92 E-value=2.1e-24 Score=171.09 Aligned_cols=165 Identities=16% Similarity=0.302 Sum_probs=140.1
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
++||||.+++...|+.|| ..|..||+|++|.+.. |++++|||||+|+-+|.|+-|++.|||..++||.|+|.+
T Consensus 114 cRvYVGSIsfEl~EDtiR----~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgr 189 (544)
T KOG0124|consen 114 CRVYVGSISFELREDTIR----RAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGR 189 (544)
T ss_pred HheeeeeeEEEechHHHH----hhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHHHhccccccCccccccC
Confidence 689999999999999999 9999999999999887 799999999999999999999999999999999999975
Q ss_pred ccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCC
Q 026902 87 AKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH 166 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~ 166 (231)
.. +. ...++.. +.. .......++|||..+.+
T Consensus 190 Ps--Nm---pQAQpiI---------D~v-----------------------------------qeeAk~fnRiYVaSvHp 220 (544)
T KOG0124|consen 190 PS--NM---PQAQPII---------DMV-----------------------------------QEEAKKFNRIYVASVHP 220 (544)
T ss_pred CC--CC---cccchHH---------HHH-----------------------------------HHHHHhhheEEeeecCC
Confidence 32 11 0001100 000 00112557799999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 167 ETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 167 ~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
+.+++||+..|+.||+|.+|.+-++. +||+||+|.+..+...|+..||-+.++| .-|+|..
T Consensus 221 DLSe~DiKSVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGG-QyLRVGk 286 (544)
T KOG0124|consen 221 DLSETDIKSVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGG-QYLRVGK 286 (544)
T ss_pred CccHHHHHHHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhccc-ceEeccc
Confidence 99999999999999999999998753 6999999999999999999999999999 9998864
No 26
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.90 E-value=4.3e-21 Score=166.31 Aligned_cols=80 Identities=15% Similarity=0.378 Sum_probs=74.8
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
..++|||+|||.++++++|+ ++|+.||.|.++++.+ ++.++|||||+|.+.++|.+|+..||++.+.|+.|+|
T Consensus 203 ~~~rLfVgnLp~~vteedLk----~lFs~FG~I~svrl~~D~~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV 278 (612)
T TIGR01645 203 KFNRIYVASVHPDLSETDIK----SVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRV 278 (612)
T ss_pred ccceEEeecCCCCCCHHHHH----HHHhhcCCeeEEEEEecCCCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEE
Confidence 45899999999999999999 9999999999999988 4779999999999999999999999999999999999
Q ss_pred EeccCcc
Q 026902 85 QYAKSKS 91 (231)
Q Consensus 85 ~~~~~~~ 91 (231)
.++..+.
T Consensus 279 ~kAi~pP 285 (612)
T TIGR01645 279 GKCVTPP 285 (612)
T ss_pred EecCCCc
Confidence 9987643
No 27
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=4.3e-22 Score=164.81 Aligned_cols=147 Identities=20% Similarity=0.381 Sum_probs=132.6
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKS 89 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~~ 89 (231)
..|||| .++|+.+|. ++|+.+|+|.++++.++--+-|||||.|.++++|.+|++++|...+.|+++++-|+..
T Consensus 2 ~sl~vg---~~v~e~~l~----~~f~~~~~v~s~rvc~d~tslgy~yvnf~~~~da~~A~~~~n~~~~~~~~~rim~s~r 74 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLF----DKFSPAGPVLSIRVCRDATSLGYAYVNFQQPADAERALDTMNFDVLKGKPIRIMWSQR 74 (369)
T ss_pred CceecC---CcCChHHHH----HHhcccCCceeEEEeecCCccceEEEecCCHHHHHHHHHHcCCcccCCcEEEeehhcc
Confidence 368999 899999988 9999999999999998323999999999999999999999999999999999988641
Q ss_pred ccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCCCCC
Q 026902 90 KSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169 (231)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t 169 (231)
.. ..+||.||+++++
T Consensus 75 d~-----------------------------------------------------------------~~~~i~nl~~~~~ 89 (369)
T KOG0123|consen 75 DP-----------------------------------------------------------------SLVFIKNLDESID 89 (369)
T ss_pred CC-----------------------------------------------------------------ceeeecCCCcccC
Confidence 11 1199999999999
Q ss_pred HHHHHHHhccCCCeeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 170 SSMLEMLFQQYPGFKEVRMIEA---KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 170 ~~~l~~~f~~~g~v~~v~~~~~---~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
..+|.++|+.||.|.+|++.++ .+|+ ||+|++.++|.+|+..+||..+++ +.|.|....
T Consensus 90 ~~~~~d~f~~~g~ilS~kv~~~~~g~kg~-FV~f~~e~~a~~ai~~~ng~ll~~-kki~vg~~~ 151 (369)
T KOG0123|consen 90 NKSLYDTFSEFGNILSCKVATDENGSKGY-FVQFESEESAKKAIEKLNGMLLNG-KKIYVGLFE 151 (369)
T ss_pred cHHHHHHHHhhcCeeEEEEEEcCCCceee-EEEeCCHHHHHHHHHHhcCcccCC-CeeEEeecc
Confidence 9999999999999999999986 4688 999999999999999999999999 999997654
No 28
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.89 E-value=1.1e-22 Score=173.27 Aligned_cols=164 Identities=23% Similarity=0.419 Sum_probs=139.4
Q ss_pred EEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CC----CccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TP----KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 11 ~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~----~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
+|||.||++++|.+++. ..|...|.|..+.|.. ++ .|.|||||+|.++++|+.|++.|+|+.+.|+.|.|
T Consensus 517 ~lfvkNlnf~Tt~e~l~----~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~l 592 (725)
T KOG0110|consen 517 KLFVKNLNFDTTLEDLE----DLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGHKLEL 592 (725)
T ss_pred hhhhhcCCcccchhHHH----HHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCceEEE
Confidence 39999999999999999 9999999999998876 22 35599999999999999999999999999999999
Q ss_pred EeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCC
Q 026902 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 164 (231)
.++..+..... |. ..........|+|+||
T Consensus 593 k~S~~k~~~~~------------------------------------------gK---------~~~~kk~~tKIlVRNi 621 (725)
T KOG0110|consen 593 KISENKPASTV------------------------------------------GK---------KKSKKKKGTKILVRNI 621 (725)
T ss_pred EeccCcccccc------------------------------------------cc---------ccccccccceeeeecc
Confidence 99862111000 00 0111123567999999
Q ss_pred CCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 165 PHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 165 p~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
|+..+..+++.+|..||.|.+|+++.- .+|||||+|.++.+|.+|+.+|.+.-+.| ++|-++||+
T Consensus 622 pFeAt~rEVr~LF~aFGqlksvRlPKK~~k~a~rGF~Fv~f~t~~ea~nA~~al~STHlyG-RrLVLEwA~ 691 (725)
T KOG0110|consen 622 PFEATKREVRKLFTAFGQLKSVRLPKKIGKGAHRGFGFVDFLTPREAKNAFDALGSTHLYG-RRLVLEWAK 691 (725)
T ss_pred chHHHHHHHHHHHhcccceeeeccchhhcchhhccceeeeccCcHHHHHHHHhhcccceec-hhhheehhc
Confidence 999999999999999999999999873 26999999999999999999999999999 999999986
No 29
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.89 E-value=1.2e-21 Score=141.81 Aligned_cols=175 Identities=18% Similarity=0.300 Sum_probs=135.4
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
...+++|||+|||.++-+.||+ .+|.+||.|..|.|.......+||||+|+++.+|..||..-+|..+.|..|+|+
T Consensus 3 gr~~~~iyvGNLP~diRekeie----DlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVE 78 (241)
T KOG0105|consen 3 GRNSRRIYVGNLPGDIREKEIE----DLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVE 78 (241)
T ss_pred CcccceEEecCCCcchhhccHH----HHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCcceEEEE
Confidence 4678999999999999999999 999999999999997655568899999999999999999999999999999999
Q ss_pred eccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCC
Q 026902 86 YAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLP 165 (231)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 165 (231)
++........ .-+.+.- .... |...-. ..-...-.+...+.|.+||
T Consensus 79 fprggr~s~~-~~G~y~g---------------------------ggrg---Ggg~gg---~rgppsrrSe~RVvVsGLp 124 (241)
T KOG0105|consen 79 FPRGGRSSSD-RRGSYSG---------------------------GGRG---GGGGGG---RRGPPSRRSEYRVVVSGLP 124 (241)
T ss_pred eccCCCcccc-cccccCC---------------------------CCCC---CCCCCc---ccCCcccccceeEEEecCC
Confidence 9864331100 0000000 0000 000000 0001122345669999999
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCC
Q 026902 166 HETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITP 220 (231)
Q Consensus 166 ~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~ 220 (231)
.+.+.+||++++..-|+|....+.++. ++.|+|...++...|+..|....+..
T Consensus 125 ~SgSWQDLKDHmReaGdvCfadv~rDg--~GvV~~~r~eDMkYAvr~ld~~~~~s 177 (241)
T KOG0105|consen 125 PSGSWQDLKDHMREAGDVCFADVQRDG--VGVVEYLRKEDMKYAVRKLDDQKFRS 177 (241)
T ss_pred CCCchHHHHHHHHhhCCeeeeeeeccc--ceeeeeeehhhHHHHHHhhccccccC
Confidence 999999999999999999999998876 79999999999999999999876644
No 30
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.86 E-value=4.9e-21 Score=158.56 Aligned_cols=165 Identities=22% Similarity=0.379 Sum_probs=141.6
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
....|||.||+.++|..+|. ++|+.||+|.+|++.. +| ++|| ||+|.+.+.|++|+..+||..+.|+.|.|.
T Consensus 75 d~~~~~i~nl~~~~~~~~~~----d~f~~~g~ilS~kv~~~~~g-~kg~-FV~f~~e~~a~~ai~~~ng~ll~~kki~vg 148 (369)
T KOG0123|consen 75 DPSLVFIKNLDESIDNKSLY----DTFSEFGNILSCKVATDENG-SKGY-FVQFESEESAKKAIEKLNGMLLNGKKIYVG 148 (369)
T ss_pred CCceeeecCCCcccCcHHHH----HHHHhhcCeeEEEEEEcCCC-ceee-EEEeCCHHHHHHHHHHhcCcccCCCeeEEe
Confidence 34449999999999999988 9999999999999998 35 9999 999999999999999999999999999998
Q ss_pred eccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCC
Q 026902 86 YAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLP 165 (231)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 165 (231)
....+.++..... . ....-..+++.|++
T Consensus 149 ~~~~~~er~~~~~---------------------------------------------------~-~~~~~t~v~vk~~~ 176 (369)
T KOG0123|consen 149 LFERKEEREAPLG---------------------------------------------------E-YKKRFTNVYVKNLE 176 (369)
T ss_pred eccchhhhccccc---------------------------------------------------c-hhhhhhhhheeccc
Confidence 8765555332100 0 11122338999999
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 166 HETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 166 ~~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
.+.+++.|...|..+|.|.++.++++ .++|+||.|.++++|..|+..|||..+.+ ..+.|..+++
T Consensus 177 ~~~~~~~l~~~f~~~g~i~s~~v~~~~~g~~~~~gfv~f~~~e~a~~av~~l~~~~~~~-~~~~V~~aqk 245 (369)
T KOG0123|consen 177 EDSTDEELKDLFSAYGSITSVAVMRDSIGKSKGFGFVNFENPEDAKKAVETLNGKIFGD-KELYVGRAQK 245 (369)
T ss_pred cccchHHHHHhhcccCcceEEEEeecCCCCCCCccceeecChhHHHHHHHhccCCcCCc-cceeeccccc
Confidence 99999999999999999999999985 37899999999999999999999999998 9999987764
No 31
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.86 E-value=7.2e-21 Score=158.19 Aligned_cols=212 Identities=17% Similarity=0.255 Sum_probs=142.6
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
..||||||.+.+++++|+ .+|+.||.|..|.+.+ +|.++||+||+|.+.++|++|+..|||+.+-|+.|+|..
T Consensus 279 ~rl~vgnLHfNite~~lr----~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~ 354 (549)
T KOG0147|consen 279 RRLYVGNLHFNITEDMLR----GIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSV 354 (549)
T ss_pred hhhhhcccccCchHHHHh----hhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEE
Confidence 349999999999999999 9999999999998888 699999999999999999999999999999999999887
Q ss_pred ccCccchhhhcCCCcch------------hhhhHHHHHHHHHhhhH-------HHHHhcccccCCCCCCCCCCc---ccc
Q 026902 87 AKSKSDCVAKEDGSFVP------------REKKKKQEEKAERKRRA-------EEAQQSSMANGTGAQSNGGTA---ASF 144 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~---~~~ 144 (231)
...+..........+.. ..+.+...+-.+..... .....+.. +.....++... +.+
T Consensus 355 v~~r~~~~~a~~~~~d~D~~d~~gl~~~~~g~~Ql~~kla~~~~~~~~s~~~~~l~~~~~~--~~~~~~~~~~~~~~~~p 432 (549)
T KOG0147|consen 355 VTERVDTKEAAVTQFDFDEDDRQGLSLGSGGRNQLMAKLAEGKGRSLPSTAISALLLLAKL--ASAAQFNGVVRVRSVDP 432 (549)
T ss_pred eeeecccccccccccccchhhccccccccccHHHHHHHHhccCCccccchhhhHHHhcccc--chHHhhcCCcCccccCc
Confidence 64433221110000000 00000000000000000 00000000 00000000000 000
Q ss_pred cccCCCCCCCCCCEEEecCCCCCCC----------HHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc
Q 026902 145 RNANTQETAAPNNILFIQNLPHETT----------SSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214 (231)
Q Consensus 145 ~~~~~~~~~~~~~~l~v~nlp~~~t----------~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~ln 214 (231)
+. .......++.++.++|+=...+ .+|+.+..++||.|..|.+.+++.|+.||.|.+.+.|..|+.+||
T Consensus 433 ~~-~~p~~~i~t~C~lL~nMFdpstete~n~d~eI~edV~Eec~k~g~v~hi~vd~ns~g~VYvrc~s~~~A~~a~~alh 511 (549)
T KOG0147|consen 433 AD-ASPAFDIPTQCLLLSNMFDPSTETEPNWDQEIREDVIEECGKHGKVCHIFVDKNSAGCVYVRCPSAEAAGTAVKALH 511 (549)
T ss_pred cc-cccccCCccHHHHHhhcCCcccccCcchhhHHHHHHHHHHHhcCCeeEEEEccCCCceEEEecCcHHHHHHHHHHHh
Confidence 00 0112236777788888743322 377888899999999999999888999999999999999999999
Q ss_pred CCccCCCCCeEEEec
Q 026902 215 GFKITPQNPMAITFA 229 (231)
Q Consensus 215 g~~i~~~~~l~V~~a 229 (231)
|.+|.+ +.|.+.|-
T Consensus 512 grWF~g-r~Ita~~~ 525 (549)
T KOG0147|consen 512 GRWFAG-RMITAKYL 525 (549)
T ss_pred hhhhcc-ceeEEEEe
Confidence 999999 99998873
No 32
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.84 E-value=1.5e-21 Score=162.29 Aligned_cols=173 Identities=18% Similarity=0.381 Sum_probs=141.6
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
...+..++||+--|+...++.+|. ++|+.+|+|..|+++. ++.++|.|||+|.+.+....|+. |.|+.+.|.
T Consensus 174 ~eERd~Rtvf~~qla~r~~pRdL~----efFs~~gkVrdVriI~Dr~s~rskgi~Yvef~D~~sVp~aia-LsGqrllg~ 248 (549)
T KOG0147|consen 174 PEERDQRTVFCMQLARRNPPRDLE----EFFSIVGKVRDVRIIGDRNSRRSKGIAYVEFCDEQSVPLAIA-LSGQRLLGV 248 (549)
T ss_pred chHHhHHHHHHHHHhhcCCchhHH----HHHHhhcCcceeEeeccccchhhcceeEEEEecccchhhHhh-hcCCcccCc
Confidence 345667899999999999999987 9999999999999998 68899999999999999999997 999999999
Q ss_pred eeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEE
Q 026902 81 PMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILF 160 (231)
Q Consensus 81 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (231)
+|.|.....-.... +..+... . ......+-..||
T Consensus 249 pv~vq~sEaeknr~-------------------------------a~~s~a~----~-----------~k~~~~p~~rl~ 282 (549)
T KOG0147|consen 249 PVIVQLSEAEKNRA-------------------------------ANASPAL----Q-----------GKGFTGPMRRLY 282 (549)
T ss_pred eeEecccHHHHHHH-------------------------------Hhccccc----c-----------ccccccchhhhh
Confidence 99997653111100 0000000 0 011222333499
Q ss_pred ecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 161 IQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 161 v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
|+||.+++++++|+.+|+.||.|..|.+..+ .+||+||+|.+.++|.+|+..|||+++.| +.|+|..
T Consensus 283 vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~~tG~skgfGfi~f~~~~~ar~a~e~lngfelAG-r~ikV~~ 354 (549)
T KOG0147|consen 283 VGNLHFNITEDMLRGIFEPFGKIENVQLTKDSETGRSKGFGFITFVNKEDARKALEQLNGFELAG-RLIKVSV 354 (549)
T ss_pred hcccccCchHHHHhhhccCcccceeeeeccccccccccCcceEEEecHHHHHHHHHHhccceecC-ceEEEEE
Confidence 9999999999999999999999999999886 37999999999999999999999999999 9999875
No 33
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.84 E-value=3.9e-20 Score=137.84 Aligned_cols=208 Identities=24% Similarity=0.336 Sum_probs=134.4
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCC----ccceEEEEEcCHHHHHHHHHHhCCceeC---Cee
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPK----LRGQAWVVFSEVTAASNAVRQMQNFPFY---DKP 81 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~----~~g~afV~f~~~e~A~~a~~~l~g~~~~---g~~ 81 (231)
-|||||.+||.++...||- .+|..|-.-+...+..+.+ .+.+|||+|.+.+.|..|+.+|||..|. +..
T Consensus 34 VRTLFVSGLP~DvKpREiy----nLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~st 109 (284)
T KOG1457|consen 34 VRTLFVSGLPNDVKPREIY----NLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGST 109 (284)
T ss_pred cceeeeccCCcccCHHHHH----HHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCce
Confidence 6999999999999998865 9999987666666655433 4589999999999999999999999997 789
Q ss_pred eEEEeccCccchhhhcCCC-------cchhhhhHHHH-----HHHHHhhhHHHHHhccccc-----CCCCCCCCCCcccc
Q 026902 82 MRIQYAKSKSDCVAKEDGS-------FVPREKKKKQE-----EKAERKRRAEEAQQSSMAN-----GTGAQSNGGTAASF 144 (231)
Q Consensus 82 l~v~~~~~~~~~~~~~~~~-------~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~ 144 (231)
|++++++..+......... ++......... +.......+.+...+..+. +......--.+.++
T Consensus 110 LhiElAKSNtK~kr~k~sgtP~~s~al~~~~~~~~qr~sa~~qhd~~l~~p~~l~~~~~a~al~~~~~t~~~~l~a~~~~ 189 (284)
T KOG1457|consen 110 LHIELAKSNTKRKRRKGSGTPGSSPALVIDNRNKEQRKSADDQHDEGLSDPDELQEPGNADALKENDTTKSEALSAPDSK 189 (284)
T ss_pred eEeeehhcCcccccCCCCCCCCCCccccccccChhhcccchhhccccccCccccCCccccccCCCccccchhhhhhhhhc
Confidence 9999988765543222111 11111111111 0000000111111111110 00000000000001
Q ss_pred cc---c------CCCCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEee-CCCcEEEEEecCHHHHHHHHHHhc
Q 026902 145 RN---A------NTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIE-AKPGIAFVEFEDDVQSSMAMQALQ 214 (231)
Q Consensus 145 ~~---~------~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~-~~~g~afV~f~~~~~A~~A~~~ln 214 (231)
.+ + .-......+.+|||-||...+++++|+.+|+.|....-++|-. +....||++|++.+.|..|++.|+
T Consensus 190 ~P~a~a~l~ks~q~~~~~~acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~g~~vaf~~~~~~~~at~am~~lq 269 (284)
T KOG1457|consen 190 APSANAHLEKSSQGGSGARACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARGGMPVAFADFEEIEQATDAMNHLQ 269 (284)
T ss_pred CCcccchhhhhhcccccchhhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCCCcceEeecHHHHHHHHHHHHHhh
Confidence 00 0 1112344567899999999999999999999999877777643 345689999999999999999999
Q ss_pred CCccCC
Q 026902 215 GFKITP 220 (231)
Q Consensus 215 g~~i~~ 220 (231)
|+.|..
T Consensus 270 g~~~s~ 275 (284)
T KOG1457|consen 270 GNLLSS 275 (284)
T ss_pred cceecc
Confidence 988754
No 34
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.82 E-value=6.9e-20 Score=140.11 Aligned_cols=135 Identities=18% Similarity=0.374 Sum_probs=112.7
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
++...|+|||+||+.++||+-|. .||++.|+|..++++.+ .|+|
T Consensus 2 ~~~~prtlyvgnld~~vte~~i~----~lf~qig~v~~~k~i~~--------------------------------e~~v 45 (321)
T KOG0148|consen 2 GSDEPRTLYVGNLDSTVTEDFIA----TLFNQIGSVTKTKVIFD--------------------------------ELKV 45 (321)
T ss_pred CCCCCceEEeeccChhhHHHHHH----HHHHhccccccceeehh--------------------------------hhcc
Confidence 34567999999999999999998 99999999999988544 4566
Q ss_pred EeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCC
Q 026902 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 164 (231)
.++....... -.......-+||+.|
T Consensus 46 ~wa~~p~nQs-------------------------------------------------------k~t~~~hfhvfvgdl 70 (321)
T KOG0148|consen 46 NWATAPGNQS-------------------------------------------------------KPTSNQHFHVFVGDL 70 (321)
T ss_pred ccccCcccCC-------------------------------------------------------CCccccceeEEehhc
Confidence 6654331100 001112445899999
Q ss_pred CCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 165 PHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 165 p~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
-..++-++|++.|.+||+|.++++++| ++||+||.|.+.++|.+||..|||..+++ |.|+-.||.|
T Consensus 71 s~eI~~e~lr~aF~pFGevS~akvirD~~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~-R~IRTNWATR 141 (321)
T KOG0148|consen 71 SPEIDNEKLREAFAPFGEVSDAKVIRDMNTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGR-RTIRTNWATR 141 (321)
T ss_pred chhcchHHHHHHhccccccccceEeecccCCcccceeEEeccchHHHHHHHHHhCCeeecc-ceeecccccc
Confidence 999999999999999999999999997 47999999999999999999999999999 9999999976
No 35
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.81 E-value=2.5e-18 Score=138.36 Aligned_cols=188 Identities=22% Similarity=0.370 Sum_probs=146.6
Q ss_pred CCEEEEeCCCCc-cCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026902 9 NQTIYIKNLNEK-IKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYA 87 (231)
Q Consensus 9 ~~~v~v~nLp~~-~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~ 87 (231)
+..|.|.||... +|.+-|- .+|+-||.|.+|++...+ +..|.|++.+...|+-|+..|+|..|+|++|+|.++
T Consensus 297 n~vllvsnln~~~VT~d~Lf----tlFgvYGdVqRVkil~nk--kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~S 370 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLF----TLFGVYGDVQRVKILYNK--KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLS 370 (492)
T ss_pred ceEEEEecCchhccchhHHH----HHHhhhcceEEEEeeecC--CcceeeeecchhHHHHHHHHhhcceecCceEEEeec
Confidence 678899999866 7777765 999999999999998654 488999999999999999999999999999999999
Q ss_pred cCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCccc-cc-c--cCCCCCCCCCCEEEecC
Q 026902 88 KSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAAS-FR-N--ANTQETAAPNNILFIQN 163 (231)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~--~~~~~~~~~~~~l~v~n 163 (231)
+.......++.+. ...+..+++..+.. ++ + .+...-.+++.+|++.|
T Consensus 371 KH~~vqlp~egq~-----------------------------d~glT~dy~~spLhrfkkpgsKN~~ni~PpsatlHlsn 421 (492)
T KOG1190|consen 371 KHTNVQLPREGQE-----------------------------DQGLTKDYGNSPLHRFKKPGSKNYQNIFPPSATLHLSN 421 (492)
T ss_pred cCccccCCCCCCc-----------------------------cccccccCCCCchhhccCcccccccccCCchhheeecc
Confidence 7665543321111 01222333332211 11 1 12333456788999999
Q ss_pred CCCCCCHHHHHHHhccCCCe-eEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 164 LPHETTSSMLEMLFQQYPGF-KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 164 lp~~~t~~~l~~~f~~~g~v-~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
+|.++++++|++.|..-|.. +...+....+.+|.++++++++|..|+..+|++..+++..|+|+|+|.
T Consensus 422 ip~svsee~lk~~f~~~g~~vkafkff~kd~kmal~q~~sveeA~~ali~~hnh~lgen~hlRvSFSks 490 (492)
T KOG1190|consen 422 IPPSVSEEDLKNLFQEPGGQVKAFKFFQKDRKMALPQLESVEEAIQALIDLHNHYLGENHHLRVSFSKS 490 (492)
T ss_pred CCcccchhHHHHhhhcCCceEEeeeecCCCcceeecccCChhHhhhhccccccccCCCCceEEEEeecc
Confidence 99999999999999988876 445555555569999999999999999999999999978999999973
No 36
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=99.81 E-value=1.8e-19 Score=144.56 Aligned_cols=162 Identities=19% Similarity=0.326 Sum_probs=138.7
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
..+.|||++|+..++++.|+ +.|++||.|.++.+++ +++++||+||+|.+++....++. .....+.|+.|.+
T Consensus 5 ~~~KlfiGgisw~ttee~Lr----~yf~~~Gev~d~~vm~d~~t~rsrgFgfv~f~~~~~v~~vl~-~~~h~~dgr~ve~ 79 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLR----EYFSQFGEVTDCVVMRDPSTGRSRGFGFVTFATPEGVDAVLN-ARTHKLDGRSVEP 79 (311)
T ss_pred CCcceeecCcCccccHHHHH----HHhcccCceeeEEEeccCCCCCcccccceecCCCcchheeec-ccccccCCccccc
Confidence 78999999999999999999 9999999999999998 69999999999999999999987 5667899999999
Q ss_pred EeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCC
Q 026902 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 164 (231)
..+.++.+... .........|||++|
T Consensus 80 k~av~r~~~~~------------------------------------------------------~~~~~~tkkiFvGG~ 105 (311)
T KOG4205|consen 80 KRAVSREDQTK------------------------------------------------------VGRHLRTKKIFVGGL 105 (311)
T ss_pred eeccCcccccc------------------------------------------------------cccccceeEEEecCc
Confidence 88876654221 112225678999999
Q ss_pred CCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 165 PHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 165 p~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
|.+++++++++.|.+||.|..+.++.+ .+||+||.|.+.+....++. ..-+.|.+ +.+.|..|.
T Consensus 106 ~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~g-k~vevkrA~ 174 (311)
T KOG4205|consen 106 PPDTTEEDFKDYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNG-KKVEVKRAI 174 (311)
T ss_pred CCCCchHHHhhhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecC-ceeeEeecc
Confidence 999999999999999999988888875 37999999999888887774 66788888 888888763
No 37
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.79 E-value=1.5e-18 Score=126.01 Aligned_cols=82 Identities=21% Similarity=0.370 Sum_probs=75.7
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
...+++|||+|||..+++++|+ ++|++||.|.++.++. ++.++|||||+|.+.++|++|+..||+..+.|+.|
T Consensus 31 ~~~~~~lfVgnL~~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l 106 (144)
T PLN03134 31 RLMSTKLFIGGLSWGTDDASLR----DAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHI 106 (144)
T ss_pred cCCCCEEEEeCCCCCCCHHHHH----HHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEE
Confidence 3457899999999999999999 9999999999999986 57899999999999999999999999999999999
Q ss_pred EEEeccCcc
Q 026902 83 RIQYAKSKS 91 (231)
Q Consensus 83 ~v~~~~~~~ 91 (231)
+|.++..+.
T Consensus 107 ~V~~a~~~~ 115 (144)
T PLN03134 107 RVNPANDRP 115 (144)
T ss_pred EEEeCCcCC
Confidence 999987543
No 38
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.78 E-value=9.3e-19 Score=149.46 Aligned_cols=208 Identities=22% Similarity=0.271 Sum_probs=140.0
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
..+..+.|+|+|||..+..++|. .+|..||+|..+.++ +..-.|+|+|.++.+|++|...|....+...++.+
T Consensus 381 ~~rs~~vil~kNlpa~t~~~elt----~~F~~fG~i~rvllp---~~G~~aiv~fl~p~eAr~Afrklaysr~k~~plyl 453 (725)
T KOG0110|consen 381 AERSDTVILVKNLPAGTLSEELT----EAFLRFGEIGRVLLP---PGGTGAIVEFLNPLEARKAFRKLAYSRFKSAPLYL 453 (725)
T ss_pred hhhhcceeeeccCccccccHHHH----HHhhcccccceeecC---cccceeeeeecCccchHHHHHHhchhhhccCcccc
Confidence 45678999999999999999998 999999999999773 33345999999999999999999999999999999
Q ss_pred EeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCC
Q 026902 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 164 (231)
.|+......-......+....... ......+....... .......+...+............+ +||++||
T Consensus 454 e~aP~dvf~~~pka~~~~~e~~~~-------~ee~~~Er~s~~d~--~v~eD~d~te~ss~a~~a~~~~~~t-~lfvkNl 523 (725)
T KOG0110|consen 454 EWAPEDVFTEDPKADDLSAESRSK-------MEENPSERVSAEDG--QVEEDKDPTEESSLARVAEDEETET-KLFVKNL 523 (725)
T ss_pred ccChhhhccCCccccccccccccc-------cccCcceecccccc--cccccCCccccccchhhhhccccch-hhhhhcC
Confidence 887432211000000000000000 00000000000000 0000000000000000111111222 2999999
Q ss_pred CCCCCHHHHHHHhccCCCeeEEEEeeCC--------CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 165 PHETTSSMLEMLFQQYPGFKEVRMIEAK--------PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 165 p~~~t~~~l~~~f~~~g~v~~v~~~~~~--------~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
++++|.+++..+|...|.|.++.|...+ .|||||+|.++++|++|+..|+|+.+.| +.|.|+++.
T Consensus 524 nf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldG-H~l~lk~S~ 596 (725)
T KOG0110|consen 524 NFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDG-HKLELKISE 596 (725)
T ss_pred CcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecC-ceEEEEecc
Confidence 9999999999999999999999887632 3999999999999999999999999999 999999875
No 39
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=99.78 E-value=1.5e-17 Score=131.41 Aligned_cols=193 Identities=17% Similarity=0.261 Sum_probs=138.5
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEE--------EEEec--CCCccceEEEEEcCHHHHHHHHHHhCCce
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFD--------VVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFP 76 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~--------v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~ 76 (231)
.-++.|||.|||.++|.+++. ++|+.||-|.. |+|.+ .|..+|-|.|.|-..|++.-|+..|++..
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~----~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFA----EVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred ccCceEEecCCCCcccHHHHH----HHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCccc
Confidence 346779999999999999999 99999997755 67777 69999999999999999999999999999
Q ss_pred eCCeeeEEEeccCccc--hhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCC
Q 026902 77 FYDKPMRIQYAKSKSD--CVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAA 154 (231)
Q Consensus 77 ~~g~~l~v~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 154 (231)
|.|+.|+|..|+-... ........-... ..+.+.+.. .. .. +..+.. ...+...
T Consensus 208 ~rg~~~rVerAkfq~Kge~~~~~k~k~k~~-~~kk~~k~q-~k----~~-------dw~pd~-----------~~~sk~r 263 (382)
T KOG1548|consen 208 LRGKKLRVERAKFQMKGEYDASKKEKGKCK-DKKKLKKQQ-QK----LL-------DWRPDR-----------DDPSKAR 263 (382)
T ss_pred ccCcEEEEehhhhhhccCcCcccccccccc-cHHHHHHHH-Hh----hc-------ccCCCc-----------ccccccc
Confidence 9999999999864322 111000000000 011111100 00 00 000000 0122334
Q ss_pred CCCEEEecCCCCC----CC-------HHHHHHHhccCCCeeEEEEee-CCCcEEEEEecCHHHHHHHHHHhcCCccCCCC
Q 026902 155 PNNILFIQNLPHE----TT-------SSMLEMLFQQYPGFKEVRMIE-AKPGIAFVEFEDDVQSSMAMQALQGFKITPQN 222 (231)
Q Consensus 155 ~~~~l~v~nlp~~----~t-------~~~l~~~f~~~g~v~~v~~~~-~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~ 222 (231)
..+++.++|+=.. .+ ++||++..++||.|.+|.+.. .+.|.+-|.|.+.++|..|++.|+|+.|++ +
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~hPdGvvtV~f~n~eeA~~ciq~m~GR~fdg-R 342 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDRHPDGVVTVSFRNNEEADQCIQTMDGRWFDG-R 342 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEeccCCCceeEEEeCChHHHHHHHHHhcCeeecc-e
Confidence 6678999998431 12 577778889999999998874 467999999999999999999999999999 9
Q ss_pred CeEEEe
Q 026902 223 PMAITF 228 (231)
Q Consensus 223 ~l~V~~ 228 (231)
.|..+.
T Consensus 343 ql~A~i 348 (382)
T KOG1548|consen 343 QLTASI 348 (382)
T ss_pred EEEEEE
Confidence 998754
No 40
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.78 E-value=1.6e-17 Score=136.74 Aligned_cols=170 Identities=16% Similarity=0.232 Sum_probs=133.6
Q ss_pred CCCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec-CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK-TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 2 ~~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~-~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
+..+......|-+++||+.+|++||. ++|+.+ .|.++.+.+ +|+..|-|||+|.+.|++.+|++ .+...+..|
T Consensus 3 i~~e~~~~~~vr~rGLPwsat~~ei~----~Ff~~~-~I~~~~~~r~~Gr~sGeA~Ve~~seedv~~Alk-kdR~~mg~R 76 (510)
T KOG4211|consen 3 IENEGSTAFEVRLRGLPWSATEKEIL----DFFSNC-GIENLEIPRRNGRPSGEAYVEFTSEEDVEKALK-KDRESMGHR 76 (510)
T ss_pred cccCCCcceEEEecCCCccccHHHHH----HHHhcC-ceeEEEEeccCCCcCcceEEEeechHHHHHHHH-hhHHHhCCc
Confidence 44556677889999999999999999 999999 588888888 59999999999999999999999 788899999
Q ss_pred eeEEEeccCccc-hhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEE
Q 026902 81 PMRIQYAKSKSD-CVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNIL 159 (231)
Q Consensus 81 ~l~v~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (231)
-|.|.-+..... +..+..+ +. ......+|
T Consensus 77 YIEVf~~~~~e~d~~~~~~g-------------------------------------------------~~-s~~~d~vV 106 (510)
T KOG4211|consen 77 YIEVFTAGGAEADWVMRPGG-------------------------------------------------PN-SSANDGVV 106 (510)
T ss_pred eEEEEccCCccccccccCCC-------------------------------------------------CC-CCCCCceE
Confidence 999987754432 1111100 11 11355679
Q ss_pred EecCCCCCCCHHHHHHHhccCCCeeE-EEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 160 FIQNLPHETTSSMLEMLFQQYPGFKE-VRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 160 ~v~nlp~~~t~~~l~~~f~~~g~v~~-v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
-+++||++||++||.++|+..--|.. +.++.+ ..|.|||+|++.+.|+.|+. -|.+.|+. +-|.|-.+
T Consensus 107 RLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGh-RYIEvF~S 179 (510)
T KOG4211|consen 107 RLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGH-RYIEVFRS 179 (510)
T ss_pred EecCCCccCcHHHHHHHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhcc-ceEEeehh
Confidence 99999999999999999997765555 434443 35889999999999999997 56778887 77776443
No 41
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=99.76 E-value=1.5e-17 Score=133.89 Aligned_cols=208 Identities=20% Similarity=0.290 Sum_probs=138.5
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCC--eeeEEEec
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD--KPMRIQYA 87 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g--~~l~v~~~ 87 (231)
-+++|.|+-+.++-+-|- ++|++||.|..| +--++...-.|.|+|.+.+.|..|..+|+|..++. +.|+|.|+
T Consensus 151 Lr~iie~m~ypVslDVLH----qvFS~fG~VlKI-iTF~Knn~FQALvQy~d~~sAq~AK~aLdGqnIyngcCtLrId~S 225 (492)
T KOG1190|consen 151 LRTIIENMFYPVSLDVLH----QVFSKFGFVLKI-ITFTKNNGFQALVQYTDAVSAQAAKLALDGQNIYNGCCTLRIDFS 225 (492)
T ss_pred EEEEeccceeeeEHHHHH----HHHhhcceeEEE-EEEecccchhhhhhccchhhHHHHHHhccCCcccCceeEEEeehh
Confidence 467899999999998877 999999999765 22256667789999999999999999999998873 67888887
Q ss_pred cCccchhh---hcCCCcchhhhhHHHHHHHHHhhhHHHHHhc----ccccCCCCCCCCCCc---ccccccCCCCCCCCCC
Q 026902 88 KSKSDCVA---KEDGSFVPREKKKKQEEKAERKRRAEEAQQS----SMANGTGAQSNGGTA---ASFRNANTQETAAPNN 157 (231)
Q Consensus 88 ~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~ 157 (231)
+--..... .....+........ ......+..+.... ..+..+..-..+... .+.+...+. .+.
T Consensus 226 klt~LnvKynndkSRDyTnp~LP~g---d~~p~l~~~~~aa~~~~~~~~g~p~aip~~~~~a~~a~~~~~~~~----~n~ 298 (492)
T KOG1190|consen 226 KLTDLNVKYNNDKSRDYTNPDLPVG---DGQPSLDQLMAAAFGSVPAVHGAPLAIPSGAAGANAADGKIESPS----ANV 298 (492)
T ss_pred hcccceeeccccccccccCCCCCCC---ccccccchhhhccccccccccCCcccCCccchhhcccccccccCC----Cce
Confidence 54322111 01111110000000 00000000000000 000000000000000 101111111 267
Q ss_pred EEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 158 ILFIQNLPH-ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 158 ~l~v~nlp~-~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.|.|.||.. .+|.+-|..+|+-||+|..|+|..+++-.|.|+|.+..+|+.|+.+|+|..++| ++|+|.++|
T Consensus 299 vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd~ALIQmsd~~qAqLA~~hL~g~~l~g-k~lrvt~SK 371 (492)
T KOG1190|consen 299 VLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKDNALIQMSDGQQAQLAMEHLEGHKLYG-KKLRVTLSK 371 (492)
T ss_pred EEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCcceeeeecchhHHHHHHHHhhcceecC-ceEEEeecc
Confidence 788888875 499999999999999999999999988889999999999999999999999999 999999987
No 42
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=99.76 E-value=2e-18 Score=130.61 Aligned_cols=165 Identities=19% Similarity=0.327 Sum_probs=130.0
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKS 89 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~~ 89 (231)
..||||+||+.+.+.+|+ .+|..||.+.++.+ ..||+||+|.+..+|..|+..+|+..|.|-.+.|.++..
T Consensus 2 ~rv~vg~~~~~~~~~d~E----~~f~~yg~~~d~~m-----k~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~ 72 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVE----RFFKGYGKIPDADM-----KNGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARG 72 (216)
T ss_pred CceeecccCCccchhHHH----HHHhhcccccccee-----ecccceeccCchhhhhcccchhcCceecceeeeeecccc
Confidence 469999999999999999 99999999999988 578999999999999999999999999998888888763
Q ss_pred ccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCCCCC
Q 026902 90 KSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETT 169 (231)
Q Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t 169 (231)
.....-...+.....+ .. ...........+.+.|++..+.
T Consensus 73 ~~~~~g~~~~g~r~~~----------------------------~~------------~~~~p~~s~~r~~~~~~~~r~~ 112 (216)
T KOG0106|consen 73 KRRGRGRPRGGDRRSD----------------------------SR------------RYRPPSRTHFRLIVRNLSLRVS 112 (216)
T ss_pred cccccCCCCCCCccch----------------------------hh------------ccCCcccccceeeeccchhhhh
Confidence 2211100000000000 00 0111123556788999999999
Q ss_pred HHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 170 SSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 170 ~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
+.+|.++|.++|.+..... .++++||+|++.++|..|+..|+|..+.+ ++|.+.
T Consensus 113 ~qdl~d~~~~~g~~~~~~~---~~~~~~v~Fs~~~da~ra~~~l~~~~~~~-~~l~~~ 166 (216)
T KOG0106|consen 113 WQDLKDHFRPAGEVTYVDA---RRNFAFVEFSEQEDAKRALEKLDGKKLNG-RRISVE 166 (216)
T ss_pred HHHHhhhhcccCCCchhhh---hccccceeehhhhhhhhcchhccchhhcC-ceeeec
Confidence 9999999999999965555 56789999999999999999999999999 999874
No 43
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.73 E-value=3.4e-17 Score=118.92 Aligned_cols=76 Identities=21% Similarity=0.390 Sum_probs=71.1
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
..+++|||+|||..+++++|+++|++||.|.++.++.++ +|||||+|.+.++|++|+..|||..|++ ++|+|++
T Consensus 32 ~~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~G-r~l~V~~ 110 (144)
T PLN03134 32 LMSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRETGRSRGFGFVNFNDEGAATAAISEMDGKELNG-RHIRVNP 110 (144)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEe
Confidence 456789999999999999999999999999999998753 6999999999999999999999999999 9999999
Q ss_pred cc
Q 026902 229 AK 230 (231)
Q Consensus 229 a~ 230 (231)
++
T Consensus 111 a~ 112 (144)
T PLN03134 111 AN 112 (144)
T ss_pred CC
Confidence 86
No 44
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.71 E-value=7.4e-17 Score=102.94 Aligned_cols=68 Identities=28% Similarity=0.542 Sum_probs=64.9
Q ss_pred EEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 12 v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
|||+|||.++|+++|+ ++|++||.|..+.+.. ++.++++|||+|.+.++|.+|++.++|..+.|+.|+
T Consensus 1 l~v~nlp~~~t~~~l~----~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELR----DFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHH----HHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred cEEcCCCCcCCHHHHH----HHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 7999999999999999 9999999999998888 588999999999999999999999999999999885
No 45
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=99.69 E-value=1.6e-15 Score=120.92 Aligned_cols=84 Identities=15% Similarity=0.375 Sum_probs=76.5
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
.....+|||..+..+.+|+||+ ..|+.||+|..|.+-+ .+.++||+|++|.+..+-..|+..||=+.++|+-|
T Consensus 207 Ak~fnRiYVaSvHpDLSe~DiK----SVFEAFG~I~~C~LAr~pt~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyL 282 (544)
T KOG0124|consen 207 AKKFNRIYVASVHPDLSETDIK----SVFEAFGEIVKCQLARAPTGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYL 282 (544)
T ss_pred HHhhheEEeeecCCCccHHHHH----HHHHhhcceeeEEeeccCCCCCccceeeEEeccccchHHHhhhcchhhcccceE
Confidence 3457899999999999999999 9999999999999998 36699999999999999999999999999999999
Q ss_pred EEEeccCccch
Q 026902 83 RIQYAKSKSDC 93 (231)
Q Consensus 83 ~v~~~~~~~~~ 93 (231)
+|..+....+-
T Consensus 283 RVGk~vTPP~a 293 (544)
T KOG0124|consen 283 RVGKCVTPPDA 293 (544)
T ss_pred ecccccCCCch
Confidence 99987765543
No 46
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.68 E-value=2.7e-16 Score=103.54 Aligned_cols=80 Identities=29% Similarity=0.501 Sum_probs=74.1
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYA 87 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~ 87 (231)
-++.|||+|||+++|.+++= ++|.+||.|..|++-.+...+|.|||.|++..+|++|++.|+|+.+.++.|.|.|.
T Consensus 17 vnriLyirNLp~~ITseemy----dlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyy 92 (124)
T KOG0114|consen 17 VNRILYIRNLPFKITSEEMY----DLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYY 92 (124)
T ss_pred hheeEEEecCCccccHHHHH----HHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEec
Confidence 47899999999999999976 99999999999999888889999999999999999999999999999999999997
Q ss_pred cCcc
Q 026902 88 KSKS 91 (231)
Q Consensus 88 ~~~~ 91 (231)
.+..
T Consensus 93 q~~~ 96 (124)
T KOG0114|consen 93 QPED 96 (124)
T ss_pred CHHH
Confidence 6443
No 47
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.68 E-value=3.3e-15 Score=119.36 Aligned_cols=221 Identities=22% Similarity=0.333 Sum_probs=147.6
Q ss_pred CCCCCCCEEEEeCCCCc--cCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeC--C
Q 026902 4 GDIPPNQTIYIKNLNEK--IKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFY--D 79 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~--~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~--g 79 (231)
+...++..|.+.=|..- +|-+ .||.+....|+|.+|.+.+. +--.|.|+|.+.+.|++|.+.|||-.++ .
T Consensus 115 es~~pN~VLl~TIlNp~YpItvD----Vly~Icnp~GkVlRIvIfkk--ngVQAmVEFdsv~~AqrAk~alNGADIYsGC 188 (494)
T KOG1456|consen 115 ESATPNKVLLFTILNPQYPITVD----VLYTICNPQGKVLRIVIFKK--NGVQAMVEFDSVEVAQRAKAALNGADIYSGC 188 (494)
T ss_pred CCCCCCeEEEEEeecCccccchh----hhhhhcCCCCceEEEEEEec--cceeeEEeechhHHHHHHHhhcccccccccc
Confidence 34466777777766644 5544 46699999999999988753 5668999999999999999999998887 3
Q ss_pred eeeEEEeccCccchhhhcCCCc---c-hhhhhHHHHHHH-------HHhhhHHHHHhcccccCCCCCCC-C---CCcccc
Q 026902 80 KPMRIQYAKSKSDCVAKEDGSF---V-PREKKKKQEEKA-------ERKRRAEEAQQSSMANGTGAQSN-G---GTAASF 144 (231)
Q Consensus 80 ~~l~v~~~~~~~~~~~~~~~~~---~-~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~-~---~~~~~~ 144 (231)
++|+|+|+++....+.+.+... . +..+........ .................-..+.. + +++...
T Consensus 189 CTLKIeyAkP~rlnV~knd~DtwDyTlp~~~~~~~~g~~~~~r~~~p~~~~~~pss~~G~h~~y~sg~~~~p~~~~P~r~ 268 (494)
T KOG1456|consen 189 CTLKIEYAKPTRLNVQKNDKDTWDYTLPDLRGPYDPGRNHYDRQRQPAPLGYHPSSRGGGHSGYYSGDRHGPPHPPPSRY 268 (494)
T ss_pred eeEEEEecCcceeeeeecCCccccccCCCCCCCCCCCCCCCccccCCCccCCChhhcCCCCCCCcccccCCCCCCCCCCC
Confidence 7899999988766555443331 0 000000000000 00000000000000000011111 1 111000
Q ss_pred c-------ccCCCCCCCCCCEEEecCCCCC-CCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCC
Q 026902 145 R-------NANTQETAAPNNILFIQNLPHE-TTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGF 216 (231)
Q Consensus 145 ~-------~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~ 216 (231)
+ ...+..-..++..+.|-+|... +.-+-|.++|..||.|..|++++.+.|.|+|++.+...-++|+..||+.
T Consensus 269 ~~~~~~~~g~a~p~g~~~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~gtamVemgd~~aver~v~hLnn~ 348 (494)
T KOG1456|consen 269 RDGYRDGRGYASPGGGAPGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKPGTAMVEMGDAYAVERAVTHLNNI 348 (494)
T ss_pred ccccccCCCCCCCCCCCCCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeecccceeEEEcCcHHHHHHHHHHhccC
Confidence 0 0112234556788999999986 7789999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCeEEEeccC
Q 026902 217 KITPQNPMAITFAKK 231 (231)
Q Consensus 217 ~i~~~~~l~V~~a~~ 231 (231)
.+-| .+|.|.++++
T Consensus 349 ~lfG-~kl~v~~SkQ 362 (494)
T KOG1456|consen 349 PLFG-GKLNVCVSKQ 362 (494)
T ss_pred cccc-ceEEEeeccc
Confidence 9988 9999998874
No 48
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.68 E-value=5.5e-16 Score=134.50 Aligned_cols=136 Identities=15% Similarity=0.158 Sum_probs=101.8
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccC--CCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQY--GRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~--g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
..++|||+|||..+++++|+ ++|+.| |.|.+|.+ .++||||+|.+.++|.+|+..|||..|.|+.|+|.
T Consensus 232 ~~k~LfVgNL~~~~tee~L~----~~F~~f~~G~I~rV~~-----~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~ 302 (578)
T TIGR01648 232 KVKILYVRNLMTTTTEEIIE----KSFSEFKPGKVERVKK-----IRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVT 302 (578)
T ss_pred cccEEEEeCCCCCCCHHHHH----HHHHhcCCCceEEEEe-----ecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEE
Confidence 46889999999999999999 999999 99999977 36799999999999999999999999999999999
Q ss_pred eccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCC
Q 026902 86 YAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLP 165 (231)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 165 (231)
++++........... .. ...+...............+...+++++|++
T Consensus 303 ~Akp~~~~~~~~~~r---g~-----------------------------gg~~~~~~~~~~~~g~~~sp~s~~~~~g~~~ 350 (578)
T TIGR01648 303 LAKPVDKKSYVRYTR---GT-----------------------------GGRGKERQAARQSLGQVYDPASRSLAYEDYY 350 (578)
T ss_pred EccCCCccccccccc---cc-----------------------------CCCcccccccccccCcccCcccccccccccc
Confidence 997654321100000 00 0000000001111223345567889999999
Q ss_pred CCCCHHHHHHHhccCCCee
Q 026902 166 HETTSSMLEMLFQQYPGFK 184 (231)
Q Consensus 166 ~~~t~~~l~~~f~~~g~v~ 184 (231)
++++++.+.++|..+|.+.
T Consensus 351 ~~~~~~~~~~~f~~~g~~~ 369 (578)
T TIGR01648 351 YHPPYAPSLHFPRMPGPIR 369 (578)
T ss_pred ccccccchhhccccCcccc
Confidence 9999999999999988765
No 49
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.68 E-value=4.4e-15 Score=120.88 Aligned_cols=216 Identities=17% Similarity=0.242 Sum_probs=137.5
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhc-cCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFS-QYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~-~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
-.|.+||.|||+++.+.+|+ ++|. +-|.|..|.|.. .++++|||.|+|+++|.+++|++.||.+.+.||+|.|
T Consensus 43 r~R~vfItNIpyd~rWqdLK----dLvrekvGev~yveLl~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~v 118 (608)
T KOG4212|consen 43 RDRSVFITNIPYDYRWQDLK----DLVREKVGEVEYVELLFDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVV 118 (608)
T ss_pred ccceEEEecCcchhhhHhHH----HHHHHhcCceEeeeeecccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEE
Confidence 35779999999999999999 8885 478999998887 6999999999999999999999999999999999998
Q ss_pred EeccCccchh-----hhcCCCcchhhhhHHHHHHHHHh------------hhHHHHHhcccccCCCCCCCCCCc------
Q 026902 85 QYAKSKSDCV-----AKEDGSFVPREKKKKQEEKAERK------------RRAEEAQQSSMANGTGAQSNGGTA------ 141 (231)
Q Consensus 85 ~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~------ 141 (231)
.--....-.. ......|......+---..+..- ..................++....
T Consensus 119 KEd~d~q~~~~~~~~r~g~~~f~~~~~~q~G~~~l~~~g~ggG~~~Rg~~~~D~Dr~sr~~~t~t~~~~~~~~~~~~lfg 198 (608)
T KOG4212|consen 119 KEDHDEQRDQYGRIVRDGGGGFGGGGGVQGGNGGLNGGGGGGGDRDRGFSRRDDDRLSRRNNTNTMSNDYNNSSNYNLFG 198 (608)
T ss_pred eccCchhhhhhhheeeccCcccccCcceecccccccccCCCCccccCCCCcccccccccccCccccccccccchhhhccc
Confidence 6432210000 00000000000000000000000 000000000000000000000000
Q ss_pred --ccccccCCCCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcC
Q 026902 142 --ASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQG 215 (231)
Q Consensus 142 --~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng 215 (231)
.++-.+.-.-..|....+||.||...+...-|.+.|.-.|.|..+.+.-+ ++|++.++|+++.+|..|+..|++
T Consensus 199 l~~~Flr~~h~f~pPl~~k~fvanl~~~vg~~kL~qvfgmAGkv~~vdf~idKeG~s~G~~vi~y~hpveavqaIsml~~ 278 (608)
T KOG4212|consen 199 LSASFLRSLHIFSPPLHNKVFVANLDYKVGNKKLKQVFGMAGKVQSVDFSIDKEGNSRGFAVIEYDHPVEAVQAISMLDR 278 (608)
T ss_pred chhhhhhhccCCCCCccceeeeeccccccchHHHHHHhccceeeeeeceeeccccccCCeeEEEecchHHHHHHHHhhcc
Confidence 11111111124455677999999999999999999999999999888765 378999999999999999999998
Q ss_pred CccCCCCCeEEEe
Q 026902 216 FKITPQNPMAITF 228 (231)
Q Consensus 216 ~~i~~~~~l~V~~ 228 (231)
.-..+ ++..+.+
T Consensus 279 ~g~~~-~~~~~Rl 290 (608)
T KOG4212|consen 279 QGLFD-RRMTVRL 290 (608)
T ss_pred CCCcc-ccceeec
Confidence 66565 6666654
No 50
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.67 E-value=2e-16 Score=113.96 Aligned_cols=78 Identities=27% Similarity=0.458 Sum_probs=72.7
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
...+.||||||+..+++.||+ ..|..||+|..|.+-+ ...|||||+|+++.+|..|+..|+|..|+|..++|+.
T Consensus 8 ~~~~kVYVGnL~~~a~k~eLE----~~F~~yG~lrsvWvAr--nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~ 81 (195)
T KOG0107|consen 8 NGNTKVYVGNLGSRATKRELE----RAFSKYGPLRSVWVAR--NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVEL 81 (195)
T ss_pred CCCceEEeccCCCCcchHHHH----HHHHhcCcceeEEEee--cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEe
Confidence 558999999999999999999 9999999999999965 6899999999999999999999999999999999998
Q ss_pred ccCc
Q 026902 87 AKSK 90 (231)
Q Consensus 87 ~~~~ 90 (231)
+.-.
T Consensus 82 S~G~ 85 (195)
T KOG0107|consen 82 STGR 85 (195)
T ss_pred ecCC
Confidence 7644
No 51
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.67 E-value=4.1e-16 Score=121.19 Aligned_cols=77 Identities=22% Similarity=0.267 Sum_probs=72.5
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYA 87 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~ 87 (231)
..++|||+|||+.+|+++|+ ++|+.||.|.+|.|++++.++|||||+|.++++|..|+. |||..+.|+.|.|.++
T Consensus 3 ~~rtVfVgNLs~~tTE~dLr----efFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a 77 (260)
T PLN03120 3 QVRTVKVSNVSLKATERDIK----EFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPA 77 (260)
T ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEec
Confidence 46899999999999999999 999999999999999887789999999999999999996 9999999999999997
Q ss_pred cC
Q 026902 88 KS 89 (231)
Q Consensus 88 ~~ 89 (231)
..
T Consensus 78 ~~ 79 (260)
T PLN03120 78 ED 79 (260)
T ss_pred cC
Confidence 53
No 52
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.66 E-value=2.9e-16 Score=113.11 Aligned_cols=75 Identities=29% Similarity=0.478 Sum_probs=71.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
..+.|||+||+..+++.||..+|..||.|.+|++-..+.|||||+|+++.+|..|+..|+|..|.+ ..|+|++++
T Consensus 9 ~~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnPPGfAFVEFed~RDA~DAvr~LDG~~~cG-~r~rVE~S~ 83 (195)
T KOG0107|consen 9 GNTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNPPGFAFVEFEDPRDAEDAVRYLDGKDICG-SRIRVELST 83 (195)
T ss_pred CCceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecCCCceEEeccCcccHHHHHhhcCCccccC-ceEEEEeec
Confidence 467799999999999999999999999999999999999999999999999999999999999999 999999874
No 53
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.65 E-value=1.4e-15 Score=97.20 Aligned_cols=68 Identities=29% Similarity=0.482 Sum_probs=61.8
Q ss_pred EEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC--CCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 12 IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT--PKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 12 v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~--~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
|||+|||..+++++|+ ++|+.||.|..+.+..+ +.++++|||+|.++++|.+|++.++|..|.|+.|+
T Consensus 1 v~i~nlp~~~~~~~l~----~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLR----NFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHH----HHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CEEeCCCCCCCHHHHH----HHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 7999999999999999 99999999999999884 67899999999999999999999999999999874
No 54
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.64 E-value=4.6e-16 Score=99.23 Aligned_cols=66 Identities=30% Similarity=0.578 Sum_probs=62.1
Q ss_pred EEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 159 LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 159 l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
|||+|||..+++++|+++|++||.|..+.+.++ .+++|||+|.+.++|..|+..|||..+++ +.|+
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~-~~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSSGKSKGYAFVEFESEEDAEKALEELNGKKING-RKIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT-EEEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhcccccccccccccccceEEEEEcCHHHHHHHHHHcCCCEECc-cCcC
Confidence 799999999999999999999999999999885 36899999999999999999999999999 8875
No 55
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=8.9e-16 Score=129.33 Aligned_cols=180 Identities=19% Similarity=0.286 Sum_probs=134.5
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
....+||++||...++++++ ++...||++....+.+ +|.++||||.+|.++-.+..|+..|||..++++.|.|
T Consensus 288 ~~~ki~v~~lp~~l~~~q~~----Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvv 363 (500)
T KOG0120|consen 288 SPNKIFVGGLPLYLTEDQVK----ELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVV 363 (500)
T ss_pred ccchhhhccCcCccCHHHHH----HHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcCceeEe
Confidence 35789999999999999999 9999999998887777 5899999999999999999999999999999999999
Q ss_pred EeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCC
Q 026902 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 164 (231)
..+-.............. . ...+-.. ...+....++.+|++-|+
T Consensus 364 q~A~~g~~~~~~~~~~~~------------------------------~-~~~~i~~-----~~~q~~g~~t~Vl~L~n~ 407 (500)
T KOG0120|consen 364 QRAIVGASNANVNFNISQ------------------------------S-QVPGIPL-----LMTQMAGIPTEVLCLTNV 407 (500)
T ss_pred ehhhccchhccccCCccc------------------------------c-ccccchh-----hhcccCCCcchhhhhhhc
Confidence 887544332110000000 0 0000000 012334556666766664
Q ss_pred CC--CC-C-------HHHHHHHhccCCCeeEEEEeeC--------CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 165 PH--ET-T-------SSMLEMLFQQYPGFKEVRMIEA--------KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 165 p~--~~-t-------~~~l~~~f~~~g~v~~v~~~~~--------~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
=. .. . -+|++..+++||.|..|.+++. ..|..||+|.+.+++++|+.+|+|..|.+ +++-.
T Consensus 408 Vt~deLkdd~EyeeIlEdvr~ec~k~g~v~~v~ipr~~~~~~~~~G~GkVFVefas~ed~qrA~~~L~GrKF~n-RtVvt 486 (500)
T KOG0120|consen 408 VTPDELKDDEEYEEILEDVRTECAKFGAVRSVEIPRPYPDENPVPGTGKVFVEFADTEDSQRAMEELTGRKFAN-RTVVA 486 (500)
T ss_pred CCHHHhcchHHHHHHHHHHHHHhcccCceeEEecCCCCCCCCcCCCcccEEEEecChHHHHHHHHHccCceeCC-cEEEE
Confidence 21 11 1 2556667889999999999875 25789999999999999999999999999 98877
Q ss_pred Ee
Q 026902 227 TF 228 (231)
Q Consensus 227 ~~ 228 (231)
+|
T Consensus 487 sY 488 (500)
T KOG0120|consen 487 SY 488 (500)
T ss_pred Ee
Confidence 65
No 56
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.63 E-value=1.2e-15 Score=120.03 Aligned_cols=82 Identities=13% Similarity=0.341 Sum_probs=75.7
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec-CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK-TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~-~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
.....++|+|+|||+.+-+-||+ .+|.+||+|.+|.|+. ..-||||+||+|.++++|++|.++|||..+.||+|.
T Consensus 92 s~~~pkRLhVSNIPFrFRdpDL~----aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIE 167 (376)
T KOG0125|consen 92 SKDTPKRLHVSNIPFRFRDPDLR----AMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEGRKIE 167 (376)
T ss_pred CCCCCceeEeecCCccccCccHH----HHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeeceEEE
Confidence 34557999999999999999999 9999999999999888 455999999999999999999999999999999999
Q ss_pred EEeccCc
Q 026902 84 IQYAKSK 90 (231)
Q Consensus 84 v~~~~~~ 90 (231)
|..+..+
T Consensus 168 Vn~ATar 174 (376)
T KOG0125|consen 168 VNNATAR 174 (376)
T ss_pred Eeccchh
Confidence 9998765
No 57
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.61 E-value=1e-14 Score=117.08 Aligned_cols=142 Identities=23% Similarity=0.331 Sum_probs=107.9
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
.++|||+|||..+++++|+ ++|..||.|..+.+.. ++.++|+|||.|.+.++|..|+..++|..|.|++|.|.
T Consensus 115 ~~~l~v~nL~~~~~~~~l~----~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~ 190 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLR----ELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQ 190 (306)
T ss_pred CceEEEeCCCCCCCHHHHH----HHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEee
Confidence 5999999999999999999 9999999999888887 48999999999999999999999999999999999999
Q ss_pred eccC-ccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCC
Q 026902 86 YAKS-KSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164 (231)
Q Consensus 86 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 164 (231)
++.. ...... .... ...... ................+++.++
T Consensus 191 ~~~~~~~~~~~---~~~~-------~~~~~~---------------------------~~~~~~~~~~~~~~~~~~~~~~ 233 (306)
T COG0724 191 KAQPASQPRSE---LSNN-------LDASFA---------------------------KKLSRGKALLLEKSDNLYVGNL 233 (306)
T ss_pred ccccccccccc---cccc-------cchhhh---------------------------ccccccccccccccceeecccc
Confidence 9653 000000 0000 000000 0000012223445667999999
Q ss_pred CCCCCHHHHHHHhccCCCeeEEEEeeC
Q 026902 165 PHETTSSMLEMLFQQYPGFKEVRMIEA 191 (231)
Q Consensus 165 p~~~t~~~l~~~f~~~g~v~~v~~~~~ 191 (231)
+..++..++...|..+|.+....+...
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~~~~~~ 260 (306)
T COG0724 234 PLKTAEEELADLFKSRGDIVRASLPPS 260 (306)
T ss_pred ccccchhHHHHhccccccceeeeccCC
Confidence 999999999999999999977766654
No 58
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.61 E-value=4.6e-15 Score=113.59 Aligned_cols=78 Identities=23% Similarity=0.297 Sum_probs=72.9
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
+.+.+|||+||++.+|+++|+ ++|+.||.|.+|.|.+++..+++|||+|.+++.|..|+. |+|..|.+++|.|..
T Consensus 3 ~~g~TV~V~NLS~~tTE~dLr----efFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAll-LnGa~l~d~~I~It~ 77 (243)
T PLN03121 3 PGGYTAEVTNLSPKATEKDVY----DFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAVL-LSGATIVDQRVCITR 77 (243)
T ss_pred CCceEEEEecCCCCCCHHHHH----HHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHHh-cCCCeeCCceEEEEe
Confidence 346899999999999999999 999999999999999998889999999999999999997 999999999999988
Q ss_pred ccC
Q 026902 87 AKS 89 (231)
Q Consensus 87 ~~~ 89 (231)
...
T Consensus 78 ~~~ 80 (243)
T PLN03121 78 WGQ 80 (243)
T ss_pred Ccc
Confidence 653
No 59
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=8.9e-15 Score=96.45 Aligned_cols=77 Identities=29% Similarity=0.510 Sum_probs=69.8
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC--CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~--~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
.....++.|||+|||+++|.+++.++|.+||.|..+++-.. .+|.|||.|++..+|.+|+.+|+|+.+.+ +.|.|-+
T Consensus 13 lppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~-ryl~vly 91 (124)
T KOG0114|consen 13 LPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKETRGTAFVVYEDIFDAKKACDHLSGYNVDN-RYLVVLY 91 (124)
T ss_pred CChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCcCceEEEEehHhhhHHHHHHHhcccccCC-ceEEEEe
Confidence 34456788999999999999999999999999999999553 47999999999999999999999999999 9998865
No 60
>PLN03213 repressor of silencing 3; Provisional
Probab=99.60 E-value=4e-15 Score=122.92 Aligned_cols=79 Identities=18% Similarity=0.265 Sum_probs=72.8
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec-CCCccceEEEEEcCH--HHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK-TPKLRGQAWVVFSEV--TAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~-~~~~~g~afV~f~~~--e~A~~a~~~l~g~~~~g~~l 82 (231)
.....+||||||++.++++||+ .+|..||.|..|.|++ +| ||||||+|.+. .++.+||..|||..|.|+.|
T Consensus 7 ~~~gMRIYVGNLSydVTEDDLr----avFSeFGsVkdVEIpRETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~L 80 (759)
T PLN03213 7 GGGGVRLHVGGLGESVGRDDLL----KIFSPMGTVDAVEFVRTKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRL 80 (759)
T ss_pred CCcceEEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEecccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCcee
Confidence 3457899999999999999999 9999999999999998 56 99999999987 78999999999999999999
Q ss_pred EEEeccCc
Q 026902 83 RIQYAKSK 90 (231)
Q Consensus 83 ~v~~~~~~ 90 (231)
+|..+++.
T Consensus 81 KVNKAKP~ 88 (759)
T PLN03213 81 RLEKAKEH 88 (759)
T ss_pred EEeeccHH
Confidence 99998654
No 61
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.60 E-value=5.2e-15 Score=112.04 Aligned_cols=79 Identities=24% Similarity=0.487 Sum_probs=75.1
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
...+|-|.|||.+++|++|+ +||..||.|..|.|.+ ||.++|||||+|.+.++|.+||..|||.-+..-.|+|
T Consensus 188 D~~tvRvtNLsed~~E~dL~----eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~LILrv 263 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLE----ELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDNLILRV 263 (270)
T ss_pred ccceeEEecCccccChhHHH----HHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccceEEEEE
Confidence 46789999999999999999 9999999999999998 7999999999999999999999999999999999999
Q ss_pred EeccCc
Q 026902 85 QYAKSK 90 (231)
Q Consensus 85 ~~~~~~ 90 (231)
+|++++
T Consensus 264 EwskP~ 269 (270)
T KOG0122|consen 264 EWSKPS 269 (270)
T ss_pred EecCCC
Confidence 999875
No 62
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.60 E-value=5.4e-15 Score=116.33 Aligned_cols=75 Identities=20% Similarity=0.362 Sum_probs=70.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA---KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~---~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
..++|+|+|||+...+-||+..|.+||.|.+|.|+.+ ++||+||+|+++++|.+|-..|||..|.| |+|.|..|.
T Consensus 95 ~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERGSKGFGFVTmen~~dadRARa~LHgt~VEG-RkIEVn~AT 172 (376)
T KOG0125|consen 95 TPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERGSKGFGFVTMENPADADRARAELHGTVVEG-RKIEVNNAT 172 (376)
T ss_pred CCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCCCCccceEEecChhhHHHHHHHhhcceeec-eEEEEeccc
Confidence 3467999999999999999999999999999999974 68999999999999999999999999999 999998763
No 63
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.60 E-value=7.3e-15 Score=114.27 Aligned_cols=73 Identities=23% Similarity=0.306 Sum_probs=68.6
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC--CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK--PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~--~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.++|||+|||+.+++++|+++|+.||.|.+|.|+.++ +|||||+|.++++|..|+ .|||..|.+ +.|+|.+++
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~~~GfAFVtF~d~eaAe~Al-lLnG~~l~g-r~V~Vt~a~ 78 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENERSQIAYVTFKDPQGAETAL-LLSGATIVD-QSVTITPAE 78 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEeCcHHHHHHHH-HhcCCeeCC-ceEEEEecc
Confidence 5689999999999999999999999999999999874 699999999999999999 599999999 999999875
No 64
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.59 E-value=3.3e-15 Score=102.27 Aligned_cols=78 Identities=24% Similarity=0.384 Sum_probs=71.2
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
.+.++|||||||++.++|++|- ++|+++|+|..|.|-- +..+-|||||+|-+.++|..|++.++|+.+..++|
T Consensus 33 ~r~S~tvyVgNlSfyttEEqiy----ELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLddr~i 108 (153)
T KOG0121|consen 33 LRKSCTVYVGNLSFYTTEEQIY----ELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPI 108 (153)
T ss_pred HhhcceEEEeeeeeeecHHHHH----HHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccccce
Confidence 4678999999999999999987 9999999999987654 45678999999999999999999999999999999
Q ss_pred EEEec
Q 026902 83 RIQYA 87 (231)
Q Consensus 83 ~v~~~ 87 (231)
++.|-
T Consensus 109 r~D~D 113 (153)
T KOG0121|consen 109 RIDWD 113 (153)
T ss_pred eeecc
Confidence 99885
No 65
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.59 E-value=7.5e-15 Score=121.22 Aligned_cols=78 Identities=24% Similarity=0.464 Sum_probs=72.2
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
.....++|||+|||.++|+++|+++|+.||.|.+|+|+.+. +|||||+|.++++|.+|+..|||..+.+ ++|+|
T Consensus 103 ~~~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~g-r~i~V 181 (346)
T TIGR01659 103 TNNSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYKTGYSFGYAFVDFGSEADSQRAIKNLNGITVRN-KRLKV 181 (346)
T ss_pred CCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccCcEEEEEEccHHHHHHHHHHcCCCccCC-ceeee
Confidence 44567889999999999999999999999999999998763 5899999999999999999999999999 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.|++
T Consensus 182 ~~a~ 185 (346)
T TIGR01659 182 SYAR 185 (346)
T ss_pred eccc
Confidence 9985
No 66
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.57 E-value=1.2e-14 Score=92.74 Aligned_cols=66 Identities=33% Similarity=0.584 Sum_probs=60.1
Q ss_pred EEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 159 LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 159 l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
|||+|||..+++++|+++|+.||.|..+.+..++ +++|||+|.++++|.+|+..++|..|+| +.|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g-~~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKDGQSRGFAFVEFSSEEDAKRALELLNGKEIDG-RKLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTTSSEEEEEEEEESSHHHHHHHHHHHTTEEETT-EEEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeeccccCCEEEEEeCCHHHHHHHHHHCCCcEECC-EEcC
Confidence 7999999999999999999999999999999974 6899999999999999999999999998 8774
No 67
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.55 E-value=2.5e-14 Score=111.29 Aligned_cols=79 Identities=18% Similarity=0.374 Sum_probs=74.5
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
-+.+||||+-|+++++|+.|+ ..|+.||+|+.|+|++ ||+++|||||+|.+..+...|....+|..|.|+.|.
T Consensus 99 DPy~TLFv~RLnydT~EskLr----reF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~ 174 (335)
T KOG0113|consen 99 DPYKTLFVARLNYDTSESKLR----REFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRIL 174 (335)
T ss_pred CccceeeeeeccccccHHHHH----HHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecCcEEE
Confidence 568999999999999999999 9999999999999998 799999999999999999999999999999999999
Q ss_pred EEeccC
Q 026902 84 IQYAKS 89 (231)
Q Consensus 84 v~~~~~ 89 (231)
|.+-..
T Consensus 175 VDvERg 180 (335)
T KOG0113|consen 175 VDVERG 180 (335)
T ss_pred EEeccc
Confidence 987543
No 68
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=99.54 E-value=1.7e-13 Score=109.69 Aligned_cols=164 Identities=22% Similarity=0.282 Sum_probs=131.8
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHH--hCCceeCCeeeEE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQ--MQNFPFYDKPMRI 84 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~--l~g~~~~g~~l~v 84 (231)
.++-.|.|++|-..++|.||- +-.+.||+|..+.. ...+..|.|+|++.+.|+.++.. -+...+.|+.-.+
T Consensus 29 ~~spvvhvr~l~~~v~eadl~----eal~~fG~i~yvt~---~P~~r~alvefedi~~akn~Vnfaa~n~i~i~gq~Al~ 101 (494)
T KOG1456|consen 29 NPSPVVHVRGLHQGVVEADLV----EALSNFGPIAYVTC---MPHKRQALVEFEDIEGAKNCVNFAADNQIYIAGQQALF 101 (494)
T ss_pred CCCceEEEeccccccchhHHH----HHHhcCCceEEEEe---ccccceeeeeeccccchhhheehhccCcccccCchhhc
Confidence 457899999999999999999 99999999998877 66788999999999999998862 2445666777666
Q ss_pred EeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEec--
Q 026902 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQ-- 162 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~-- 162 (231)
.|+..+..... -.....+++.|.+.
T Consensus 102 NyStsq~i~R~-----------------------------------------------------g~es~~pN~VLl~TIl 128 (494)
T KOG1456|consen 102 NYSTSQCIERP-----------------------------------------------------GDESATPNKVLLFTIL 128 (494)
T ss_pred ccchhhhhccC-----------------------------------------------------CCCCCCCCeEEEEEee
Confidence 66643322111 01123356666554
Q ss_pred CCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCC-CCeEEEecc
Q 026902 163 NLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ-NPMAITFAK 230 (231)
Q Consensus 163 nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~-~~l~V~~a~ 230 (231)
|--+.+|.+-|..+....|.|..+.|++..--.|.|+|++.+.|++|...|||-.|..| .+|+|+|||
T Consensus 129 Np~YpItvDVly~Icnp~GkVlRIvIfkkngVQAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAk 197 (494)
T KOG1456|consen 129 NPQYPITVDVLYTICNPQGKVLRIVIFKKNGVQAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAK 197 (494)
T ss_pred cCccccchhhhhhhcCCCCceEEEEEEeccceeeEEeechhHHHHHHHhhcccccccccceeEEEEecC
Confidence 44467899999999999999999999886534699999999999999999999999988 899999997
No 69
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.52 E-value=5.9e-14 Score=85.50 Aligned_cols=56 Identities=29% Similarity=0.584 Sum_probs=52.2
Q ss_pred HHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 173 LEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 173 l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
|.++|++||.|..+.+.+..+++|||+|.+.++|..|+..|||..++| ++|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~~~~a~V~f~~~~~A~~a~~~l~~~~~~g-~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKKRGFAFVEFASVEDAQKAIEQLNGRQFNG-RPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTSTTEEEEEESSHHHHHHHHHHHTTSEETT-EEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEC
Confidence 678999999999999988777899999999999999999999999999 99999997
No 70
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=1.3e-13 Score=87.68 Aligned_cols=70 Identities=31% Similarity=0.525 Sum_probs=64.9
Q ss_pred EEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC-CCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT-PKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 11 ~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~-~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
+|||+|||..+++++|+ ++|..||+|..+.+..+ +.++|+|||+|.+.++|.+|+..++|..+.|+++.|
T Consensus 1 ~v~i~~l~~~~~~~~l~----~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLK----ELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHH----HHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEee
Confidence 58999999999999999 99999999999988764 567899999999999999999999999999999876
No 71
>smart00362 RRM_2 RNA recognition motif.
Probab=99.52 E-value=9e-14 Score=88.43 Aligned_cols=69 Identities=33% Similarity=0.615 Sum_probs=64.2
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 158 ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK---PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 158 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~---~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
+|+|+|||..+++++|.++|.+||.+..+.+..+. +|+|||+|.+.++|..|+..++|..+.+ ++|.|+
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~-~~i~v~ 72 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDTGKSKGFAFVEFESEEDAEKAIEALNGTKLGG-RPLRVE 72 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCCCCCCceEEEEeCCHHHHHHHHHHhCCcEECC-EEEeeC
Confidence 48999999999999999999999999999998765 6899999999999999999999999998 988874
No 72
>PLN03213 repressor of silencing 3; Provisional
Probab=99.51 E-value=8.1e-14 Score=115.29 Aligned_cols=76 Identities=13% Similarity=0.187 Sum_probs=70.2
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCcEEEEEecCH--HHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-KPGIAFVEFEDD--VQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-~~g~afV~f~~~--~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
..+-+|||+||++.++++||...|+.||.|..|.|++. .+|||||+|.+. .++.+|+..|||..|.| +.|+|..||
T Consensus 8 ~~gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRETGRGFAFVEMssdddaEeeKAISaLNGAEWKG-R~LKVNKAK 86 (759)
T PLN03213 8 GGGVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTKGRSFAYIDFSPSSTNSLTKLFSTYNGCVWKG-GRLRLEKAK 86 (759)
T ss_pred CcceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEecccCCceEEEEecCCcHHHHHHHHHHhcCCeecC-ceeEEeecc
Confidence 35567999999999999999999999999999999974 489999999987 68999999999999999 999999987
No 73
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.51 E-value=2.5e-15 Score=108.88 Aligned_cols=77 Identities=25% Similarity=0.512 Sum_probs=72.9
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
..+.-|||||||++.||.||. ..|++||.|.+|.|++ ||+++||||+.|++..+..-|+.-|||..+.||.|+
T Consensus 33 kdsA~Iyiggl~~~LtEgDil----~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtir 108 (219)
T KOG0126|consen 33 KDSAYIYIGGLPYELTEGDIL----CVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIR 108 (219)
T ss_pred ccceEEEECCCcccccCCcEE----EEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecceeEE
Confidence 457789999999999999999 9999999999999998 799999999999999999999999999999999999
Q ss_pred EEec
Q 026902 84 IQYA 87 (231)
Q Consensus 84 v~~~ 87 (231)
|...
T Consensus 109 VDHv 112 (219)
T KOG0126|consen 109 VDHV 112 (219)
T ss_pred eeec
Confidence 9864
No 74
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.51 E-value=4.9e-14 Score=96.54 Aligned_cols=75 Identities=20% Similarity=0.346 Sum_probs=69.0
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
..+++|||+||...++++.|.++|+++|+|..|.+-.+ +.|||||+|...++|..|+..+||+.++. ++|+|+|
T Consensus 34 r~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~kktpCGFCFVeyy~~~dA~~AlryisgtrLdd-r~ir~D~ 112 (153)
T KOG0121|consen 34 RKSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFKKTPCGFCFVEYYSRDDAEDALRYISGTRLDD-RPIRIDW 112 (153)
T ss_pred hhcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCCcCccceEEEEEecchhHHHHHHHhccCcccc-cceeeec
Confidence 36788999999999999999999999999999888654 36999999999999999999999999999 9999987
Q ss_pred c
Q 026902 229 A 229 (231)
Q Consensus 229 a 229 (231)
-
T Consensus 113 D 113 (153)
T KOG0121|consen 113 D 113 (153)
T ss_pred c
Confidence 3
No 75
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.51 E-value=1.5e-13 Score=83.64 Aligned_cols=56 Identities=36% Similarity=0.693 Sum_probs=50.5
Q ss_pred HHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026902 30 LYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYA 87 (231)
Q Consensus 30 l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~ 87 (231)
|+++|++||+|..+.+..+. +++|||+|.+.++|.+|+..|||..|.|++|+|.|+
T Consensus 1 L~~~f~~fG~V~~i~~~~~~--~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK--RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS--TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 45999999999999996554 699999999999999999999999999999999985
No 76
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.50 E-value=8.9e-14 Score=105.44 Aligned_cols=75 Identities=24% Similarity=0.410 Sum_probs=71.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
...+|-|.||+.+++++||.++|.+||.|..+++.+++ +|||||.|...++|++|+..|||+-++. =.|+|+|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~-LILrvEws 266 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKETGLSKGFAFVTFESRDDAARAIADLNGYGYDN-LILRVEWS 266 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccccCcccceEEEEEecHHHHHHHHHHccCcccce-EEEEEEec
Confidence 45679999999999999999999999999999999974 7999999999999999999999999999 99999999
Q ss_pred c
Q 026902 230 K 230 (231)
Q Consensus 230 ~ 230 (231)
|
T Consensus 267 k 267 (270)
T KOG0122|consen 267 K 267 (270)
T ss_pred C
Confidence 7
No 77
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.50 E-value=4.5e-14 Score=106.60 Aligned_cols=77 Identities=25% Similarity=0.374 Sum_probs=67.4
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
+..-+.||||+|++.+..++|+ +.|++||+|.+..++. +++++||+||+|++.+.|.+|++ --+-.|.||+-
T Consensus 9 DT~~TKifVggL~w~T~~~~l~----~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~-dp~piIdGR~a 83 (247)
T KOG0149|consen 9 DTTFTKIFVGGLAWETHKETLR----RYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACK-DPNPIIDGRKA 83 (247)
T ss_pred CceEEEEEEcCcccccchHHHH----HHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhc-CCCCccccccc
Confidence 3456899999999999999999 9999999999988887 69999999999999999999998 45567888876
Q ss_pred EEEec
Q 026902 83 RIQYA 87 (231)
Q Consensus 83 ~v~~~ 87 (231)
.+..+
T Consensus 84 NcnlA 88 (247)
T KOG0149|consen 84 NCNLA 88 (247)
T ss_pred ccchh
Confidence 66554
No 78
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.50 E-value=5.6e-14 Score=102.27 Aligned_cols=76 Identities=25% Similarity=0.497 Sum_probs=69.8
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEee--CCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIE--AKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~--~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
...++|||+|||.++.+.||.++|.+||.|..|.|.. ....||||+|+++.+|..||..-+|+.+++ .+|+|+|++
T Consensus 4 r~~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g~ppfafVeFEd~RDAeDAiygRdGYdydg-~rLRVEfpr 81 (241)
T KOG0105|consen 4 RNSRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPGPPPFAFVEFEDPRDAEDAIYGRDGYDYDG-CRLRVEFPR 81 (241)
T ss_pred cccceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCCCCCeeEEEecCccchhhhhhcccccccCc-ceEEEEecc
Confidence 3567899999999999999999999999999988854 345799999999999999999999999999 999999986
No 79
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.48 E-value=8e-14 Score=103.17 Aligned_cols=84 Identities=26% Similarity=0.438 Sum_probs=77.3
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCC
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD 79 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g 79 (231)
+++...-..|-|-||.+.++.++|+ .+|++||.|-+|.|++ |+.++|||||.|....+|+.|+++|+|.++.|
T Consensus 7 PPdv~gm~SLkVdNLTyRTspd~Lr----rvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg 82 (256)
T KOG4207|consen 7 PPDVEGMTSLKVDNLTYRTSPDDLR----RVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG 82 (256)
T ss_pred CCCcccceeEEecceeccCCHHHHH----HHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc
Confidence 4556667899999999999999999 9999999999999998 68899999999999999999999999999999
Q ss_pred eeeEEEeccCc
Q 026902 80 KPMRIQYAKSK 90 (231)
Q Consensus 80 ~~l~v~~~~~~ 90 (231)
+.|.|+++.-.
T Consensus 83 RelrVq~aryg 93 (256)
T KOG4207|consen 83 RELRVQMARYG 93 (256)
T ss_pred ceeeehhhhcC
Confidence 99999987543
No 80
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=3.5e-13 Score=103.35 Aligned_cols=73 Identities=22% Similarity=0.254 Sum_probs=67.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC--CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK--PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~--~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
.+.+|+|+||++.+|++||+++|+.||.|.+|.|++++ .++|||+|.++++|..|+ .|||..|.+ ++|.|...
T Consensus 4 ~g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d-~~I~It~~ 78 (243)
T PLN03121 4 GGYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSGEYACTAYVTFKDAYALETAV-LLSGATIVD-QRVCITRW 78 (243)
T ss_pred CceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCCCcceEEEEEECCHHHHHHHH-hcCCCeeCC-ceEEEEeC
Confidence 45789999999999999999999999999999999874 479999999999999999 799999999 99998753
No 81
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.45 E-value=1.4e-13 Score=101.94 Aligned_cols=74 Identities=24% Similarity=0.418 Sum_probs=69.7
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
-.+|.|-||.+-++.++|+.+|++||.|-+|.|+.++ +|||||.|..-.+|+.|+.+|+|..++| +.|+|++|+
T Consensus 13 m~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~Tr~sRgFaFVrf~~k~daedA~damDG~~ldg-RelrVq~ar 91 (256)
T KOG4207|consen 13 MTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRYTRQSRGFAFVRFHDKRDAEDALDAMDGAVLDG-RELRVQMAR 91 (256)
T ss_pred ceeEEecceeccCCHHHHHHHHHHhCcccceecccccccccccceeEEEeeecchHHHHHHhhcceeecc-ceeeehhhh
Confidence 3458999999999999999999999999999999863 7999999999999999999999999999 999999986
No 82
>smart00360 RRM RNA recognition motif.
Probab=99.45 E-value=5.1e-13 Score=84.59 Aligned_cols=67 Identities=30% Similarity=0.528 Sum_probs=62.2
Q ss_pred EeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 14 IKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 14 v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
|+|||..+++++|+ ++|..||.|..+.+.. ++.++|+|||+|.+.++|..|+..+++..+.|+.++|
T Consensus 1 i~~l~~~~~~~~l~----~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v 70 (71)
T smart00360 1 VGNLPPDVTEEELR----ELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKV 70 (71)
T ss_pred CCCCCcccCHHHHH----HHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEe
Confidence 68999999999999 9999999999998877 3678999999999999999999999999999999876
No 83
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=9.4e-13 Score=84.09 Aligned_cols=70 Identities=37% Similarity=0.688 Sum_probs=65.5
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 158 ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 158 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
+|+|+|||..+++++|.++|+.||.|..+.+..++ +++|||+|.+.++|..|+..+++..+.+ +.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~-~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGG-RPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEeC
Confidence 48999999999999999999999999999998864 6899999999999999999999999998 9999875
No 84
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.44 E-value=1.2e-12 Score=83.64 Aligned_cols=72 Identities=26% Similarity=0.576 Sum_probs=65.7
Q ss_pred EEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC--CCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT--PKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 11 ~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~--~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
+|+|+|||..+++++|+ ++|..+|.|..+.+..+ +..+++|||+|.+.++|..|+..+++..+.|+.+.|.+
T Consensus 1 ~i~i~~l~~~~~~~~i~----~~~~~~g~i~~~~~~~~~~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLR----ELFSKFGKVESVRIVRDKDTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHH----HHHHhcCCEEEEEEeeCCCCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 58999999999999999 99999999999988874 35689999999999999999999999999999998854
No 85
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.44 E-value=3.5e-13 Score=113.06 Aligned_cols=77 Identities=22% Similarity=0.462 Sum_probs=73.6
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
+.|||||+|+++++++|. .+|+..|+|..++++. +|+++||||++|.+.++|.+|++.|||..+.||+|+|.|
T Consensus 19 ~~v~vgnip~~~se~~l~----~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~ 94 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLL----SIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNY 94 (435)
T ss_pred cceEecCCCCcccHHHHH----HHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeec
Confidence 899999999999999998 9999999999999998 699999999999999999999999999999999999999
Q ss_pred ccCc
Q 026902 87 AKSK 90 (231)
Q Consensus 87 ~~~~ 90 (231)
+...
T Consensus 95 ~~~~ 98 (435)
T KOG0108|consen 95 ASNR 98 (435)
T ss_pred cccc
Confidence 8643
No 86
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.43 E-value=3.4e-13 Score=93.24 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=70.6
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
..++.|||.++....+++||.+.|..||+|+.+.+-.++ +|||.|+|++..+|+.|+..|||..+-+ ..|.|.|
T Consensus 70 VEGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~-q~v~VDw 148 (170)
T KOG0130|consen 70 VEGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLG-QNVSVDW 148 (170)
T ss_pred eeeEEEEEeccCcchhHHHHHHHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhC-CceeEEE
Confidence 367899999999999999999999999999999998775 6899999999999999999999999999 9999999
Q ss_pred c
Q 026902 229 A 229 (231)
Q Consensus 229 a 229 (231)
+
T Consensus 149 ~ 149 (170)
T KOG0130|consen 149 C 149 (170)
T ss_pred E
Confidence 6
No 87
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=9.3e-13 Score=100.86 Aligned_cols=78 Identities=21% Similarity=0.453 Sum_probs=72.1
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
.......|+|.-||..+|+++++.+|...|+|++|++++|+ -||+||.|.++.+|.+|++.|||..+.. ++|+|
T Consensus 37 t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~-KTIKV 115 (360)
T KOG0145|consen 37 TDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQN-KTIKV 115 (360)
T ss_pred cCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHhhhcceeecc-ceEEE
Confidence 34455668899999999999999999999999999999985 4899999999999999999999999999 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
+|||
T Consensus 116 SyAR 119 (360)
T KOG0145|consen 116 SYAR 119 (360)
T ss_pred Eecc
Confidence 9997
No 88
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=99.41 E-value=8.2e-13 Score=111.60 Aligned_cols=180 Identities=18% Similarity=0.344 Sum_probs=133.7
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccC-----------C-CeEEEEEecCCCccceEEEEEcCHHHHHHHHHH
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQY-----------G-RIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQ 71 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~-----------g-~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~ 71 (231)
.....++.++|+++|+.++++..- .+|+.- | .+..+.+ ...+++||++|.+.+.|..|+.
T Consensus 170 ~~t~q~~r~~v~~~~~~~~e~~~~----~f~~~~~~~~gl~~~~~g~~~~s~~~---n~~~nfa~ie~~s~~~at~~~~- 241 (500)
T KOG0120|consen 170 QATRQARRLYVGNIPFTSNEESMM----SFFNSRMHASGLNQAPDGPSFVSVQL---NLEKNFAFIEFRSISEATEAMA- 241 (500)
T ss_pred chhhhhhhhcccccCCccCcHhhh----hhhhhhhhhcccccCCCCCceeeeee---cccccceeEEecCCCchhhhhc-
Confidence 334567899999999999999987 655541 2 3555666 6789999999999999999998
Q ss_pred hCCceeCCeeeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCC
Q 026902 72 MQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQE 151 (231)
Q Consensus 72 l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 151 (231)
+++..+.|+++++........... .. ..... .+. .+.... ...
T Consensus 242 ~~~~~f~g~~~~~~r~~d~~~~p~---~~-----------------------~~~~~--------~~~--~~~~~~-~t~ 284 (500)
T KOG0120|consen 242 LDGIIFEGRPLKIRRPHDYQPVPG---IT-----------------------LSPSQ--------LGK--VGLLPA-STD 284 (500)
T ss_pred ccchhhCCCCceecccccccCCcc---ch-----------------------hhhcc--------ccc--cCCccc-ccC
Confidence 999999999998876533221100 00 00000 000 000000 111
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
.....+.++|+|||...+++++.+++..||++....++.+ ++||||.+|.++.....|+..|||..+++ +.|.|
T Consensus 285 ~~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd-~~lvv 363 (500)
T KOG0120|consen 285 VPDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGD-KKLVV 363 (500)
T ss_pred cccccchhhhccCcCccCHHHHHHHHHhcccchhheeecccccccccceeeeeeeCCcchhhhhcccchhhhcC-ceeEe
Confidence 2224466999999999999999999999999999888775 47999999999999999999999999999 99999
Q ss_pred Eec
Q 026902 227 TFA 229 (231)
Q Consensus 227 ~~a 229 (231)
..|
T Consensus 364 q~A 366 (500)
T KOG0120|consen 364 QRA 366 (500)
T ss_pred ehh
Confidence 876
No 89
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.41 E-value=1e-11 Score=101.59 Aligned_cols=77 Identities=19% Similarity=0.259 Sum_probs=69.4
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
..+..++|+|+|||.++|.+.|++-|..||.|.++.|+-..+..+.|.|.++++|.+|+..|||..+.+ +-|+|.|.
T Consensus 532 aarKa~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~GkskGVVrF~s~edAEra~a~Mngs~l~G-r~I~V~y~ 608 (608)
T KOG4212|consen 532 AARKACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMENGKSKGVVRFFSPEDAERACALMNGSRLDG-RNIKVTYF 608 (608)
T ss_pred ccccccEEEEecCCccccHHHHHHHHHhccceehhhhhccCCccceEEecCHHHHHHHHHHhccCcccC-ceeeeeeC
Confidence 344567899999999999999999999999999999976655667999999999999999999999999 99999873
No 90
>smart00360 RRM RNA recognition motif.
Probab=99.41 E-value=1.3e-12 Score=82.59 Aligned_cols=66 Identities=33% Similarity=0.639 Sum_probs=60.9
Q ss_pred ecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 161 IQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 161 v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
|+|||..+++++|+++|++||.|..+.+..++ +|+|||+|.+.++|..|+..|||..+.+ +.|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~-~~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKDTGKSKGFAFVEFESEEDAEKALEALNGKELDG-RPLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCCCCCCCceEEEEeCCHHHHHHHHHHcCCCeeCC-cEEEeC
Confidence 57999999999999999999999999998864 4899999999999999999999999998 998874
No 91
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.40 E-value=6e-13 Score=92.05 Aligned_cols=77 Identities=17% Similarity=0.345 Sum_probs=71.6
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
+=.|||.++...++|++|. +.|..||+|.++.|-- +|-.+|||+|+|.+.+.|+.|+.++||..+.|+.|.|.
T Consensus 72 GwIi~VtgvHeEatEedi~----d~F~dyGeiKNihLNLDRRtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VD 147 (170)
T KOG0130|consen 72 GWIIFVTGVHEEATEEDIH----DKFADYGEIKNIHLNLDRRTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVD 147 (170)
T ss_pred eEEEEEeccCcchhHHHHH----HHHhhcccccceeeccccccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEE
Confidence 4579999999999999999 9999999999998764 78899999999999999999999999999999999999
Q ss_pred eccC
Q 026902 86 YAKS 89 (231)
Q Consensus 86 ~~~~ 89 (231)
|+-.
T Consensus 148 w~Fv 151 (170)
T KOG0130|consen 148 WCFV 151 (170)
T ss_pred EEEe
Confidence 9743
No 92
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=99.40 E-value=2.9e-12 Score=103.05 Aligned_cols=183 Identities=14% Similarity=0.155 Sum_probs=118.3
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhcc----CCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQ----YGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~----~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
.-.|.+++||+++++.|+. .+|.. -|..+.|.+++ +|+..|-|||.|..+++|+.|+. -|...++-|-|
T Consensus 161 qvivRmRGLPfdat~~dVv----~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~-khrq~iGqRYI 235 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVV----EFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALR-KHRQNIGQRYI 235 (508)
T ss_pred ceEEEecCCCCCcchHHHH----HhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHH-HHHHHHhHHHH
Confidence 4467788999999999999 99963 22344454444 79999999999999999999998 46566665666
Q ss_pred EEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEec
Q 026902 83 RIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQ 162 (231)
Q Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 162 (231)
.+.++..... ++-.... . .. +..+..++.+.+ ..+..-.....+.++|-++
T Consensus 236 ElFRSTaaEv------------------qqvlnr~----~-s~---pLi~~~~sp~~p---~~p~~~~p~~~~kdcvRLR 286 (508)
T KOG1365|consen 236 ELFRSTAAEV------------------QQVLNRE----V-SE---PLIPGLTSPLLP---GGPARLVPPTRSKDCVRLR 286 (508)
T ss_pred HHHHHhHHHH------------------HHHHHhh----c-cc---cccCCCCCCCCC---CCccccCCCCCCCCeeEec
Confidence 5544321110 0000000 0 00 000000111111 0011111223347789999
Q ss_pred CCCCCCCHHHHHHHhccCCC-eeE--EEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 163 NLPHETTSSMLEMLFQQYPG-FKE--VRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 163 nlp~~~t~~~l~~~f~~~g~-v~~--v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
+||+..+.+||.++|..|.. |.. |.++.+ ..|.|||+|.+.+.|.+|.+.-|+..... +-|.|
T Consensus 287 GLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~-RYiEv 356 (508)
T KOG1365|consen 287 GLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQGRPSGEAFIQMRNAERARAAAQKCHKKLMKS-RYIEV 356 (508)
T ss_pred CCChhhhHHHHHHHHHHHhhhcccceeEEEEcCCCCcChhhhhhhhhhHHHHHHHHHHHHhhccc-ceEEE
Confidence 99999999999999988763 333 566554 35899999999999999999888776655 66655
No 93
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.39 E-value=1.6e-12 Score=97.89 Aligned_cols=77 Identities=35% Similarity=0.591 Sum_probs=70.7
Q ss_pred CCCCEEEecCCCCCCCHHHHHH----HhccCCCeeEEEEeeCC--CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 154 APNNILFIQNLPHETTSSMLEM----LFQQYPGFKEVRMIEAK--PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~----~f~~~g~v~~v~~~~~~--~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
.++.||||.||+..+..++|+. +|++||.|..|...... +|-|||.|.+++.|..|+..|+|+.+.| ++++|.
T Consensus 7 ~pn~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFyg-K~mriq 85 (221)
T KOG4206|consen 7 NPNGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTPKMRGQAFVVFKETEAASAALRALQGFPFYG-KPMRIQ 85 (221)
T ss_pred CCCceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCCCccCceEEEecChhHHHHHHHHhcCCcccC-chhhee
Confidence 3455999999999999999998 99999999999988754 6999999999999999999999999999 999999
Q ss_pred eccC
Q 026902 228 FAKK 231 (231)
Q Consensus 228 ~a~~ 231 (231)
||+.
T Consensus 86 yA~s 89 (221)
T KOG4206|consen 86 YAKS 89 (221)
T ss_pred cccC
Confidence 9974
No 94
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.38 E-value=4.1e-13 Score=117.98 Aligned_cols=159 Identities=16% Similarity=0.253 Sum_probs=137.2
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC--CCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT--PKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~--~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
+...+++||+|||+.++++.+|+ ..|..+|.|.+|.+... +..-.||||.|.+...+-+|+..+.+..+..-.+
T Consensus 368 D~~atrTLf~Gnl~~kl~eseiR----~af~e~gkve~VDiKtP~~~~esa~~f~~~~n~dmtp~ak~e~s~~~I~~g~~ 443 (975)
T KOG0112|consen 368 DFRATRTLFLGNLDSKLTESEIR----PAFDESGKVEEVDIKTPHIKTESAYAFVSLLNTDMTPSAKFEESGPLIGNGTH 443 (975)
T ss_pred chhhhhhhhhcCcccchhhhhhh----hhhhhhccccccccccCCCCcccchhhhhhhccccCcccchhhcCCccccCcc
Confidence 44678999999999999999999 99999999999988763 4456699999999999999999999887776566
Q ss_pred EEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEec
Q 026902 83 RIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQ 162 (231)
Q Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 162 (231)
++.+... ....++.++++
T Consensus 444 r~glG~~--------------------------------------------------------------kst~ttr~~sg 461 (975)
T KOG0112|consen 444 RIGLGQP--------------------------------------------------------------KSTPTTRLQSG 461 (975)
T ss_pred ccccccc--------------------------------------------------------------ccccceeeccC
Confidence 6655421 22366779999
Q ss_pred CCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCC-CCeEEEecc
Q 026902 163 NLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ-NPMAITFAK 230 (231)
Q Consensus 163 nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~-~~l~V~~a~ 230 (231)
+|+.-+...-|...|..||.|..+.+-.+. .||+|.|+++..|+.|+..|-|+.++++ ++|+|.||.
T Consensus 462 glg~w~p~~~l~r~fd~fGpir~Idy~hgq-~yayi~yes~~~aq~a~~~~rgap~G~P~~r~rvdla~ 529 (975)
T KOG0112|consen 462 GLGPWSPVSRLNREFDRFGPIRIIDYRHGQ-PYAYIQYESPPAAQAATHDMRGAPLGGPPRRLRVDLAS 529 (975)
T ss_pred CCCCCChHHHHHHHhhccCcceeeecccCC-cceeeecccCccchhhHHHHhcCcCCCCCccccccccc
Confidence 999999999999999999999998886665 5999999999999999999999999885 889999985
No 95
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.37 E-value=1.4e-12 Score=106.76 Aligned_cols=76 Identities=28% Similarity=0.449 Sum_probs=70.3
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAK 88 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~ 88 (231)
-+.|||+||+.++||+.|+ ++|++||.|+.|+.+ +.||||+|.+-++|.+||..+||..+.|.+|.|..++
T Consensus 259 VKvLYVRNL~~~tTeE~lk----~~F~~~G~veRVkk~-----rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAK 329 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLK----KLFNEFGKVERVKKP-----RDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAK 329 (506)
T ss_pred eeeeeeeccchhhhHHHHH----HHHHhccceEEeecc-----cceeEEeecchHHHHHHHHHhcCceecCceEEEEecC
Confidence 4789999999999999999 999999999999764 5699999999999999999999999999999999998
Q ss_pred Cccch
Q 026902 89 SKSDC 93 (231)
Q Consensus 89 ~~~~~ 93 (231)
+....
T Consensus 330 P~~k~ 334 (506)
T KOG0117|consen 330 PVDKK 334 (506)
T ss_pred Chhhh
Confidence 76553
No 96
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=4.3e-12 Score=98.96 Aligned_cols=78 Identities=26% Similarity=0.481 Sum_probs=72.4
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
....+.+||||.-|++.++++.|+..|+.||+|+.+.|+++ ++|||||+|++..+...|...-+|..|++ +.|-
T Consensus 96 a~gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~vTgkskGYAFIeye~erdm~~AYK~adG~~Idg-rri~ 174 (335)
T KOG0113|consen 96 AIGDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDKVTGKSKGYAFIEYEHERDMKAAYKDADGIKIDG-RRIL 174 (335)
T ss_pred ccCCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeecccCCccceEEEEeccHHHHHHHHHhccCceecC-cEEE
Confidence 34467899999999999999999999999999999999986 47999999999999999999999999999 9999
Q ss_pred EEec
Q 026902 226 ITFA 229 (231)
Q Consensus 226 V~~a 229 (231)
|++-
T Consensus 175 VDvE 178 (335)
T KOG0113|consen 175 VDVE 178 (335)
T ss_pred EEec
Confidence 9864
No 97
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.35 E-value=7e-13 Score=99.14 Aligned_cols=82 Identities=24% Similarity=0.463 Sum_probs=75.8
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
..-|+||||+|.-.++|.-|. ..|-.||.|..|.++. +++.||||||+|.-.|+|..||.-||+..++||.|+
T Consensus 8 ~~KrtlYVGGladeVtekvLh----aAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~Grtir 83 (298)
T KOG0111|consen 8 NQKRTLYVGGLADEVTEKVLH----AAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIR 83 (298)
T ss_pred ccceeEEeccchHHHHHHHHH----hccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcceeEE
Confidence 346899999999999999988 9999999999999987 688999999999999999999999999999999999
Q ss_pred EEeccCccc
Q 026902 84 IQYAKSKSD 92 (231)
Q Consensus 84 v~~~~~~~~ 92 (231)
|.++++...
T Consensus 84 VN~AkP~ki 92 (298)
T KOG0111|consen 84 VNLAKPEKI 92 (298)
T ss_pred EeecCCccc
Confidence 999986543
No 98
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.33 E-value=1.5e-13 Score=99.81 Aligned_cols=72 Identities=28% Similarity=0.516 Sum_probs=67.7
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
+.-|||+|||+..|+.||.-+|++||.|..|.+++++ +||||+.|++..+...|+..|||..|.+ +.|+|..
T Consensus 35 sA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~g-RtirVDH 111 (219)
T KOG0126|consen 35 SAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKKTGKSKGFAFLCYEDQRSTILAVDNLNGIKILG-RTIRVDH 111 (219)
T ss_pred ceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCCCCcccceEEEEecCccceEEEEeccCCceecc-eeEEeee
Confidence 3459999999999999999999999999999999973 7999999999999999999999999999 9999975
No 99
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.33 E-value=3.1e-12 Score=93.05 Aligned_cols=75 Identities=21% Similarity=0.382 Sum_probs=70.0
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
....+|||+||+..++++-|.++|-+.|+|..+.+++++ +||||++|.+.++|+-|++.||.-.+.| ++|+|..
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~~~qGygF~Ef~~eedadYAikiln~VkLYg-rpIrv~k 85 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQKHQGYGFAEFRTEEDADYAIKILNMVKLYG-RPIRVNK 85 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcccccceeEEEEechhhhHHHHHHHHHHHhcC-ceeEEEe
Confidence 356789999999999999999999999999999999863 6999999999999999999999999999 9999987
Q ss_pred c
Q 026902 229 A 229 (231)
Q Consensus 229 a 229 (231)
|
T Consensus 86 a 86 (203)
T KOG0131|consen 86 A 86 (203)
T ss_pred c
Confidence 6
No 100
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.32 E-value=3.4e-12 Score=96.52 Aligned_cols=72 Identities=25% Similarity=0.322 Sum_probs=62.4
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
-..|||+||++.++.++|+++|++||+|.+..++.|+ +||+||+|.+.+.|.+|+.-- +-.|+| |+-.+.+|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~t~rskGyGfVTf~d~~aa~rAc~dp-~piIdG-R~aNcnlA 88 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKNTGRSKGYGFVTFRDAEAATRACKDP-NPIIDG-RKANCNLA 88 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccCCccccceeeEEeecHHHHHHHhcCC-CCcccc-cccccchh
Confidence 3569999999999999999999999999999998863 799999999999999999754 456676 87776654
No 101
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.30 E-value=1.3e-11 Score=99.02 Aligned_cols=74 Identities=35% Similarity=0.633 Sum_probs=69.6
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
..+|||+|||..+++++|.++|.+||.+..+.+..++ +|+|||+|.++++|..|+..++|..|.+ ++|.|.+++
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~-~~~~v~~~~ 193 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDRETGKSRGFAFVEFESEESAEKAIEELNGKELEG-RPLRVQKAQ 193 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeeccccCccCceEEEEecCHHHHHHHHHHcCCCeECC-ceeEeeccc
Confidence 6889999999999999999999999999999998763 6999999999999999999999999999 999999864
No 102
>smart00361 RRM_1 RNA recognition motif.
Probab=99.30 E-value=2e-11 Score=77.72 Aligned_cols=62 Identities=15% Similarity=0.274 Sum_probs=50.9
Q ss_pred HHHHHHHHHHhhccCCCeEEEE-Eec---C--CCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 23 KEELKRSLYCLFSQYGRIFDVV-ALK---T--PKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 23 e~~l~~~l~~~f~~~g~v~~v~-~~~---~--~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
+++|++.|.+..+.||.|.+|. +.. + +.++|+|||+|.+.++|.+|+..|||..+.|+.|.+
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEe
Confidence 5677744444444999999884 333 3 789999999999999999999999999999999876
No 103
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.29 E-value=4.6e-12 Score=98.51 Aligned_cols=76 Identities=24% Similarity=0.452 Sum_probs=70.8
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
+..+++|+||||..+++..||| ..|++||+|.++.+ -++|+||+|...++|..|+..||+..|.|++++|.
T Consensus 75 sk~stkl~vgNis~tctn~ElR----a~fe~ygpviecdi-----vkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq 145 (346)
T KOG0109|consen 75 SKASTKLHVGNISPTCTNQELR----AKFEKYGPVIECDI-----VKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQ 145 (346)
T ss_pred CCCccccccCCCCccccCHHHh----hhhcccCCceeeee-----ecceeEEEEeeccchHHHHhcccccccccceeeee
Confidence 4578999999999999999999 99999999999988 47899999999999999999999999999999999
Q ss_pred eccCc
Q 026902 86 YAKSK 90 (231)
Q Consensus 86 ~~~~~ 90 (231)
.+..+
T Consensus 146 ~stsr 150 (346)
T KOG0109|consen 146 LSTSR 150 (346)
T ss_pred eeccc
Confidence 88543
No 104
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.28 E-value=9.4e-12 Score=104.57 Aligned_cols=73 Identities=22% Similarity=0.448 Sum_probs=70.0
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
..+||+|+|+++++++|..+|+..|.|.+++++.|+ +||||++|.+.++|..|+..|||.++.+ ++|+|.|+.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~g-r~l~v~~~~ 96 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDRETGKPKGFGFCEFTDEETAERAIRNLNGAEFNG-RKLRVNYAS 96 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccccCCCcCceeeEecCchhhHHHHHHhcCCcccCC-ceEEeeccc
Confidence 779999999999999999999999999999999874 7999999999999999999999999999 999999985
No 105
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=3.7e-12 Score=95.33 Aligned_cols=78 Identities=22% Similarity=0.428 Sum_probs=72.6
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
.....++|||++|...+++.-|...|=+||+|..+.++.+ -+|||||+|...++|.+|+..||+.++.| ++|+|
T Consensus 6 ~a~~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRgFgFVefe~aEDAaaAiDNMnesEL~G-rtirV 84 (298)
T KOG0111|consen 6 MANQKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRGFGFVEFEEAEDAAAAIDNMNESELFG-RTIRV 84 (298)
T ss_pred ccccceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccceeEEEeeccchhHHHhhcCchhhhcc-eeEEE
Confidence 4456789999999999999999999999999999999875 37999999999999999999999999999 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.||+
T Consensus 85 N~Ak 88 (298)
T KOG0111|consen 85 NLAK 88 (298)
T ss_pred eecC
Confidence 9986
No 106
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=99.25 E-value=1.9e-12 Score=96.75 Aligned_cols=141 Identities=19% Similarity=0.256 Sum_probs=113.9
Q ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeC
Q 026902 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFY 78 (231)
Q Consensus 1 ~~~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~ 78 (231)
|..+..+..++|||+|+...++|+-|. ++|.+.|+|..|.|+. +++.+ ||||.|++.-+..-|++.+||..+.
T Consensus 1 mgaaaae~drtl~v~n~~~~v~eelL~----ElfiqaGPV~kv~ip~~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~ 75 (267)
T KOG4454|consen 1 MGAAAAEMDRTLLVQNMYSGVSEELLS----ELFIQAGPVYKVGIPSGQDQEQK-FAYVFFPNENSVQLAGQLENGDDLE 75 (267)
T ss_pred CCCCCcchhhHHHHHhhhhhhhHHHHH----HHhhccCceEEEeCCCCccCCCc-eeeeecccccchhhhhhhcccchhc
Confidence 567778889999999999999999988 9999999999998887 55555 9999999999999999999999999
Q ss_pred CeeeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCE
Q 026902 79 DKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNI 158 (231)
Q Consensus 79 g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (231)
++.+.+.+-
T Consensus 76 ~~e~q~~~r----------------------------------------------------------------------- 84 (267)
T KOG4454|consen 76 EDEEQRTLR----------------------------------------------------------------------- 84 (267)
T ss_pred cchhhcccc-----------------------------------------------------------------------
Confidence 999877542
Q ss_pred EEecC----CCCCCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccC
Q 026902 159 LFIQN----LPHETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKIT 219 (231)
Q Consensus 159 l~v~n----lp~~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~ 219 (231)
.++ |...++++.+...|+.-|.+..+++.++ ++.++|+.+...-..-.++....+.+..
T Consensus 85 --~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~ 151 (267)
T KOG4454|consen 85 --CGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDNDGRNRNFGFVTYQRLCAVPFALDLYQGLELF 151 (267)
T ss_pred --cCCCcchhhhhcchhhheeeecccCCCCCccccccccCCccCccchhhhhhhcCcHHhhhhcccCcC
Confidence 122 5557788888888888888888888764 3467888887666666666666665443
No 107
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=99.23 E-value=8.8e-11 Score=97.48 Aligned_cols=207 Identities=13% Similarity=0.162 Sum_probs=120.5
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEE-EEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFD-VVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~-v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
.....|-+++||+.||++||. ++|+-.-.|.. |.++. .+++.|-|||+|++++.|++|++ -|...+..|-|.
T Consensus 101 ~~d~vVRLRGLPfscte~dI~----~FFaGL~Iv~~gi~l~~d~rgR~tGEAfVqF~sqe~ae~Al~-rhre~iGhRYIE 175 (510)
T KOG4211|consen 101 ANDGVVRLRGLPFSCTEEDIV----EFFAGLEIVPDGILLPMDQRGRPTGEAFVQFESQESAEIALG-RHRENIGHRYIE 175 (510)
T ss_pred CCCceEEecCCCccCcHHHHH----HHhcCCcccccceeeeccCCCCcccceEEEecCHHHHHHHHH-HHHHhhccceEE
Confidence 467899999999999999999 99998754444 33443 57799999999999999999999 688889989898
Q ss_pred EEeccCccchhhh--------cCCCcchhhhhHHH--HHHHHHhhhHHHHHhccccc------------C--CCCCCCC-
Q 026902 84 IQYAKSKSDCVAK--------EDGSFVPREKKKKQ--EEKAERKRRAEEAQQSSMAN------------G--TGAQSNG- 138 (231)
Q Consensus 84 v~~~~~~~~~~~~--------~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~------------~--~~~~~~~- 138 (231)
|..+......... ..+++....-.+-. -........+.++-. +... + ......+
T Consensus 176 vF~Ss~~e~~~~~~~~~~~~~rpGpy~~~~a~Rg~~d~~~~~~~~~~~~r~g-~~~~g~~g~~~~~~~~d~~~~gs~~~~ 254 (510)
T KOG4211|consen 176 VFRSSRAEVKRAAGPGDGRVGRPGPYDRPGAPRGGYDYGQGRDPGRNATRYG-AGGEGYYGFSRYPSLQDYGNFGSYGGG 254 (510)
T ss_pred eehhHHHHHHhhccccccccCCCCccccccCCccccccccccCCCccccccc-cccCCccccccCccccccccccccccc
Confidence 8876322221110 01221110000000 000000000000000 0000 0 0000000
Q ss_pred CCc---c---ccccc---CCCCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCe-eEEEEeeC--CCcEEEEEecCHHHH
Q 026902 139 GTA---A---SFRNA---NTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGF-KEVRMIEA--KPGIAFVEFEDDVQS 206 (231)
Q Consensus 139 ~~~---~---~~~~~---~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v-~~v~~~~~--~~g~afV~f~~~~~A 206 (231)
..+ . +.... ...........++.++||+..++.+|.++|+..-.+ ..+.+-.+ ..|-|+|+|.|.++|
T Consensus 255 ~~~~~~~~~g~~~~g~~g~~~~~~~~g~fv~MRGlpy~a~~~di~nfFspl~p~~v~i~ig~dGr~TGEAdveF~t~eda 334 (510)
T KOG4211|consen 255 RDPNYPVSSGPHRQGGAGDYGNGGPGGHFVHMRGLPYDATENDIANFFSPLNPYRVHIEIGPDGRATGEADVEFATGEDA 334 (510)
T ss_pred cccccCCCCCcccCCCcccccCCCCCCceeeecCCCccCCCcchhhhcCCCCceeEEEEeCCCCccCCcceeecccchhh
Confidence 000 0 00000 111222233778999999999999999999986665 22333333 257899999999999
Q ss_pred HHHHHHhcCCccCC
Q 026902 207 SMAMQALQGFKITP 220 (231)
Q Consensus 207 ~~A~~~lng~~i~~ 220 (231)
..|+.. ++..+..
T Consensus 335 v~Amsk-d~anm~h 347 (510)
T KOG4211|consen 335 VGAMGK-DGANMGH 347 (510)
T ss_pred Hhhhcc-CCcccCc
Confidence 999863 4444444
No 108
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=99.22 E-value=6.2e-11 Score=88.07 Aligned_cols=82 Identities=17% Similarity=0.305 Sum_probs=73.2
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccC-CCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQY-GRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~-g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
.......+||+.+|..+.+.++. ..|.+| |.|..+++.+ ||+++|||||+|.+.+.|.-|-+.||++.|.++
T Consensus 45 ~~~~~g~~~~~~~p~g~~e~~~~----~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~ 120 (214)
T KOG4208|consen 45 EQEIEGVVYVDHIPHGFFETEIL----NYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH 120 (214)
T ss_pred ccCCccceeecccccchhHHHHh----hhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh
Confidence 34557789999999999999998 888887 7888888855 899999999999999999999999999999999
Q ss_pred eeEEEeccCc
Q 026902 81 PMRIQYAKSK 90 (231)
Q Consensus 81 ~l~v~~~~~~ 90 (231)
.|.+.+..+.
T Consensus 121 lL~c~vmppe 130 (214)
T KOG4208|consen 121 LLECHVMPPE 130 (214)
T ss_pred eeeeEEeCch
Confidence 9999987654
No 109
>smart00361 RRM_1 RNA recognition motif.
Probab=99.21 E-value=5.6e-11 Score=75.66 Aligned_cols=57 Identities=16% Similarity=0.254 Sum_probs=49.3
Q ss_pred HHHHHHHhc----cCCCeeEEE-EeeC-------CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 170 SSMLEMLFQ----QYPGFKEVR-MIEA-------KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 170 ~~~l~~~f~----~~g~v~~v~-~~~~-------~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
+++|.++|+ +||.|.++. +..+ .+|+|||+|.+.++|.+|+..|||..+.+ +.|++.
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~g-r~l~~~ 70 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVGYENHKRGNVYITFERSEDAARAIVDLNGRYFDG-RTVKAE 70 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCCCCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC-EEEEeC
Confidence 578899998 999999885 3321 37999999999999999999999999999 998763
No 110
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.18 E-value=5.6e-11 Score=103.30 Aligned_cols=77 Identities=22% Similarity=0.477 Sum_probs=72.5
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAK 88 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~ 88 (231)
++|||||.|+..++|.||+ ++|+.||.|.+|.+ -.++|||||..-+-.+|.+|++.|+...+.++.|+|.|+.
T Consensus 421 SrTLwvG~i~k~v~e~dL~----~~feefGeiqSi~l---i~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~ 493 (894)
T KOG0132|consen 421 SRTLWVGGIPKNVTEQDLA----NLFEEFGEIQSIIL---IPPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAV 493 (894)
T ss_pred eeeeeeccccchhhHHHHH----HHHHhcccceeEee---ccCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeec
Confidence 7999999999999999999 99999999999998 6789999999999999999999999999999999999997
Q ss_pred Cccc
Q 026902 89 SKSD 92 (231)
Q Consensus 89 ~~~~ 92 (231)
.+..
T Consensus 494 g~G~ 497 (894)
T KOG0132|consen 494 GKGP 497 (894)
T ss_pred cCCc
Confidence 6533
No 111
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=99.18 E-value=2.9e-10 Score=76.07 Aligned_cols=78 Identities=24% Similarity=0.213 Sum_probs=65.7
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeC----Ceee
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFY----DKPM 82 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~----g~~l 82 (231)
+||+|+|||...|.++|.++|-+.| .|...-+.|+. ++.+.|||||.|.+++.|.+..+.++|..|. .+.+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~--~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc 79 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHF--KGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVC 79 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhc--cCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEE
Confidence 6999999999999999997776654 36666677766 5889999999999999999999999999886 4567
Q ss_pred EEEeccC
Q 026902 83 RIQYAKS 89 (231)
Q Consensus 83 ~v~~~~~ 89 (231)
.|.||.-
T Consensus 80 ~i~yAri 86 (97)
T PF04059_consen 80 EISYARI 86 (97)
T ss_pred EEehhHh
Confidence 8888753
No 112
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=1.1e-09 Score=91.69 Aligned_cols=149 Identities=19% Similarity=0.307 Sum_probs=107.0
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec------CCCccc---eEEEEEcCHHHHHHHHHHhC---C
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK------TPKLRG---QAWVVFSEVTAASNAVRQMQ---N 74 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~------~~~~~g---~afV~f~~~e~A~~a~~~l~---g 74 (231)
.-++.||||+||.+++|++|. ..|..||.+. |.=+. --..+| |+|+.|+++..++.-+.+.. +
T Consensus 257 ~~S~KVFvGGlp~dise~~i~----~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~aC~~~~~ 331 (520)
T KOG0129|consen 257 RYSRKVFVGGLPWDITEAQIN----ASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSACSEGEG 331 (520)
T ss_pred ccccceeecCCCccccHHHHH----hhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHHHhhccc
Confidence 347899999999999999999 9999999875 32221 122455 99999999998887444322 1
Q ss_pred cee--------CCeeeEEEeccC-ccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCccccc
Q 026902 75 FPF--------YDKPMRIQYAKS-KSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFR 145 (231)
Q Consensus 75 ~~~--------~g~~l~v~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (231)
..+ ..+.+.|..... ..+...
T Consensus 332 ~~yf~vss~~~k~k~VQIrPW~laDs~fv~-------------------------------------------------- 361 (520)
T KOG0129|consen 332 NYYFKVSSPTIKDKEVQIRPWVLADSDFVL-------------------------------------------------- 361 (520)
T ss_pred ceEEEEecCcccccceeEEeeEeccchhhh--------------------------------------------------
Confidence 111 112222222111 011000
Q ss_pred ccCCCCCCCCCCEEEecCCCCCCCHHHHHHHhc-cCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHH
Q 026902 146 NANTQETAAPNNILFIQNLPHETTSSMLEMLFQ-QYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQA 212 (231)
Q Consensus 146 ~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~ 212 (231)
..+....+.+||||++||..++.++|-.+|+ -||.|..+-|-+| ++|-|=|+|.+.....+||.+
T Consensus 362 --d~sq~lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 362 --DHNQPIDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred --ccCcccCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 1223445889999999999999999999999 8999999999887 378999999999999999875
No 113
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=99.16 E-value=2.9e-10 Score=72.46 Aligned_cols=75 Identities=19% Similarity=0.357 Sum_probs=56.0
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCC-CeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYG-RIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAK 88 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g-~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~ 88 (231)
..|+|.|||.+.+...|+..|.+++..+| .|..| +.+.|+|.|.+++.|.+|...|+|...+|+.|.|.|..
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v-------~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV-------SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE---------TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE-------eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcC
Confidence 46899999999999999999999999987 55444 46899999999999999999999999999999999975
Q ss_pred Ccc
Q 026902 89 SKS 91 (231)
Q Consensus 89 ~~~ 91 (231)
...
T Consensus 76 ~~r 78 (90)
T PF11608_consen 76 KNR 78 (90)
T ss_dssp -S-
T ss_pred Ccc
Confidence 433
No 114
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.15 E-value=6.9e-11 Score=94.35 Aligned_cols=79 Identities=24% Similarity=0.460 Sum_probs=73.6
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCC-----cEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKP-----GIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~-----g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
...+|.+.|||.-|.+.++++||.-+|+.||.|.+|.++++.+ .||||+|++.++..+|.-.|++--|++ ++|+
T Consensus 234 d~~PPeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDD-rRIH 312 (479)
T KOG0415|consen 234 DVKPPENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDD-RRIH 312 (479)
T ss_pred ccCCCcceEEEEecCCcccccchhhHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeecc-ceEE
Confidence 4556888999999999999999999999999999999999853 499999999999999999999999999 9999
Q ss_pred EEecc
Q 026902 226 ITFAK 230 (231)
Q Consensus 226 V~~a~ 230 (231)
|.|++
T Consensus 313 VDFSQ 317 (479)
T KOG0415|consen 313 VDFSQ 317 (479)
T ss_pred eehhh
Confidence 99986
No 115
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.13 E-value=1.4e-10 Score=100.93 Aligned_cols=74 Identities=22% Similarity=0.446 Sum_probs=70.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
-++||||++|+.++++.||.++|+.||.|.+|.+...+ ++|||.+....+|.+|+++|++..+.+ +.|+|.||.
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R-~cAfI~M~~RqdA~kalqkl~n~kv~~-k~Iki~Wa~ 493 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR-GCAFIKMVRRQDAEKALQKLSNVKVAD-KTIKIAWAV 493 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC-ceeEEEEeehhHHHHHHHHHhcccccc-eeeEEeeec
Confidence 36889999999999999999999999999999998766 799999999999999999999999999 999999984
No 116
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=2e-10 Score=91.77 Aligned_cols=83 Identities=23% Similarity=0.464 Sum_probs=77.4
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
.+|.+.|||--|..-++.+||. -+|++||+|.+|.+++ ||.+-.||||+|.+.++..+|.=.|++..+.++.|
T Consensus 236 ~PPeNVLFVCKLNPVTtDeDLe----iIFSrFG~i~sceVIRD~ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRI 311 (479)
T KOG0415|consen 236 KPPENVLFVCKLNPVTTDEDLE----IIFSRFGKIVSCEVIRDRKTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRI 311 (479)
T ss_pred CCCcceEEEEecCCcccccchh----hHHhhcccceeeeEEecccccchhheeeeeecchhhHHHHHhhhcceeeccceE
Confidence 4789999999999999999999 9999999999999998 78899999999999999999999999999999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+|.|+++-+.
T Consensus 312 HVDFSQSVsk 321 (479)
T KOG0415|consen 312 HVDFSQSVSK 321 (479)
T ss_pred Eeehhhhhhh
Confidence 9999875444
No 117
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=2.4e-10 Score=91.07 Aligned_cols=77 Identities=22% Similarity=0.371 Sum_probs=66.6
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHH-HHhcCCccCCCCCeEEEecc
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAM-QALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~-~~lng~~i~~~~~l~V~~a~ 230 (231)
....-.+|||++|...+++.||+++|.+||+|+++.+.... +.|||+|.+.+.|..|. ..+|...|.| .+|+|.|++
T Consensus 224 eD~~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~-~CAFv~ftTR~aAE~Aae~~~n~lvI~G-~Rl~i~Wg~ 301 (377)
T KOG0153|consen 224 EDTSIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK-GCAFVTFTTREAAEKAAEKSFNKLVING-FRLKIKWGR 301 (377)
T ss_pred cccceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc-ccceeeehhhHHHHHHHHhhcceeeecc-eEEEEEeCC
Confidence 34455779999999999999999999999999999998876 69999999999999764 5556677788 999999986
No 118
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.10 E-value=4e-10 Score=89.83 Aligned_cols=81 Identities=22% Similarity=0.394 Sum_probs=71.6
Q ss_pred CCCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHh-CCceeCCe
Q 026902 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQM-QNFPFYDK 80 (231)
Q Consensus 2 ~~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l-~g~~~~g~ 80 (231)
-++.+...++|||++|-..++|.+|+ +.|.+||.|+.+++ -..++||||+|.+-+.|..|.... +...+.|+
T Consensus 221 epPeD~~I~tLyIg~l~d~v~e~dIr----dhFyqyGeirsi~~---~~~~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~ 293 (377)
T KOG0153|consen 221 EPPEDTSIKTLYIGGLNDEVLEQDIR----DHFYQYGEIRSIRI---LPRKGCAFVTFTTREAAEKAAEKSFNKLVINGF 293 (377)
T ss_pred CCCcccceeEEEecccccchhHHHHH----HHHhhcCCeeeEEe---ecccccceeeehhhHHHHHHHHhhcceeeecce
Confidence 35566778999999999999999999 99999999999988 556789999999999999988754 55788999
Q ss_pred eeEEEeccC
Q 026902 81 PMRIQYAKS 89 (231)
Q Consensus 81 ~l~v~~~~~ 89 (231)
+|.|.|+.+
T Consensus 294 Rl~i~Wg~~ 302 (377)
T KOG0153|consen 294 RLKIKWGRP 302 (377)
T ss_pred EEEEEeCCC
Confidence 999999876
No 119
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.09 E-value=1.6e-10 Score=89.14 Aligned_cols=83 Identities=22% Similarity=0.390 Sum_probs=74.5
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
+.+.+++|||-.||....+.||. ++|-.||.|.+-++.. |..++.|+||.|.++.+|+.||++|||+.++=++
T Consensus 281 eGPeGCNlFIYHLPQEFgDaEli----QmF~PFGhivSaKVFvDRATNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMKR 356 (371)
T KOG0146|consen 281 EGPEGCNLFIYHLPQEFGDAELI----QMFLPFGHIVSAKVFVDRATNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMKR 356 (371)
T ss_pred cCCCcceEEEEeCchhhccHHHH----HHhccccceeeeeeeehhccccccceeeEecCCchhHHHHHHHhcchhhhhhh
Confidence 35778999999999999999998 9999999998876655 6889999999999999999999999999999999
Q ss_pred eEEEeccCcc
Q 026902 82 MRIQYAKSKS 91 (231)
Q Consensus 82 l~v~~~~~~~ 91 (231)
|+|....++.
T Consensus 357 LKVQLKRPkd 366 (371)
T KOG0146|consen 357 LKVQLKRPKD 366 (371)
T ss_pred hhhhhcCccc
Confidence 9998765554
No 120
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=99.08 E-value=5.3e-12 Score=110.60 Aligned_cols=140 Identities=22% Similarity=0.283 Sum_probs=117.0
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
+...++||+||+..+.+.||. ..|+.+|.+..+.+.. .+..+|+||+.|.++++|.+|+.... ..+.|
T Consensus 665 R~~~~~fvsnl~~~~~~~dl~----~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d-~~~~g---- 735 (881)
T KOG0128|consen 665 RDLIKIFVSNLSPKMSEEDLS----ERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRD-SCFFG---- 735 (881)
T ss_pred HHHHHHHHhhcchhhcCchhh----hhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhh-hhhhh----
Confidence 445688999999999999999 9999998877765553 68899999999999999999999433 33333
Q ss_pred EEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecC
Q 026902 84 IQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQN 163 (231)
Q Consensus 84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 163 (231)
...++|+|
T Consensus 736 ------------------------------------------------------------------------K~~v~i~g 743 (881)
T KOG0128|consen 736 ------------------------------------------------------------------------KISVAISG 743 (881)
T ss_pred ------------------------------------------------------------------------hhhhheeC
Confidence 12288999
Q ss_pred CCCCCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 164 LPHETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 164 lp~~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
.|+..|.+.++.++.++|.+.++.++.. ++|.|+|.|.++.+|.+++...++..+.. +.+.|..
T Consensus 744 ~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE-~~~~v~v 811 (881)
T KOG0128|consen 744 PPFQGTKEELKSLASKTGNVTSLRLVTVRAGKPKGKARVDYNTEADASRKVASVDVAGKRE-NNGEVQV 811 (881)
T ss_pred CCCCCchHHHHhhccccCCccccchhhhhccccccceeccCCCcchhhhhcccchhhhhhh-cCccccc
Confidence 9999999999999999999999988775 36899999999999999999988887777 6666554
No 121
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=98.99 E-value=5.5e-11 Score=96.94 Aligned_cols=147 Identities=17% Similarity=0.318 Sum_probs=118.7
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccC--CCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCC-ceeCCeeeEEEe
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQY--GRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQN-FPFYDKPMRIQY 86 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~--g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g-~~~~g~~l~v~~ 86 (231)
..+|++||....+.+||+ .+|..- +.-..+.+ ..|||||.+++...|.+|++.++| ..+.|.++.+.+
T Consensus 2 nklyignL~p~~~psdl~----svfg~ak~~~~g~fl~-----k~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~ 72 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLE----SVFGDAKIPGSGQFLV-----KSGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEH 72 (584)
T ss_pred CcccccccCCCCChHHHH----HHhccccCCCCcceee-----ecceeeccCCchhhhhhhHHhhchhhhhcCceeeccc
Confidence 468999999999999999 888753 11112222 468999999999999999999999 578899999987
Q ss_pred ccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCC
Q 026902 87 AKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH 166 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~ 166 (231)
+.++.. -++.+-|+|+|+
T Consensus 73 sv~kkq--------------------------------------------------------------rsrk~Qirnipp 90 (584)
T KOG2193|consen 73 SVPKKQ--------------------------------------------------------------RSRKIQIRNIPP 90 (584)
T ss_pred hhhHHH--------------------------------------------------------------HhhhhhHhcCCH
Confidence 654332 122378999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeeCCCc--EEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPG--IAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 167 ~~t~~~l~~~f~~~g~v~~v~~~~~~~g--~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
....+-|..++.+||.+..|..+..... ..-|+|.+.+.+..|+..|||..+.. ..++|.|
T Consensus 91 ql~wevld~Ll~qyg~ve~~eqvnt~~etavvnvty~~~~~~~~ai~kl~g~Q~en-~~~k~~Y 153 (584)
T KOG2193|consen 91 QLQWEVLDSLLAQYGTVENCEQVNTDSETAVVNVTYSAQQQHRQAIHKLNGPQLEN-QHLKVGY 153 (584)
T ss_pred HHHHHHHHHHHhccCCHhHhhhhccchHHHHHHHHHHHHHHHHHHHHhhcchHhhh-hhhhccc
Confidence 9999999999999999999887664322 34468999999999999999999998 8888876
No 122
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=5.2e-10 Score=94.28 Aligned_cols=77 Identities=30% Similarity=0.443 Sum_probs=70.3
Q ss_pred CCCCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 148 NTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 148 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
.+.....+..+|+|-|||.+++.++|..+|+.||+|+.++.-+.++|.+||+|.|..+|++|+++||+..|.+ +.|+
T Consensus 67 np~~~~~~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~-~~~k 143 (549)
T KOG4660|consen 67 NPSEKDMNQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKRGIVFVEFYDVRDAERALKALNRREIAG-KRIK 143 (549)
T ss_pred CCCcccCccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccCceEEEEEeehHhHHHHHHHHHHHHhhh-hhhc
Confidence 3445566778899999999999999999999999999999988889999999999999999999999999998 7765
No 123
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.96 E-value=9.5e-10 Score=92.75 Aligned_cols=175 Identities=22% Similarity=0.236 Sum_probs=111.1
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
..+.++|+|-|||..+++++|+ .+|+.||.|++|+. +...+|..||+|=+..+|+.|+++|++..+.|+.++-.
T Consensus 72 ~~~~~~L~v~nl~~~Vsn~~L~----~~f~~yGeir~ir~--t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k~~ 145 (549)
T KOG4660|consen 72 DMNQGTLVVFNLPRSVSNDTLL----RIFGAYGEIREIRE--TPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIKRP 145 (549)
T ss_pred cCccceEEEEecCCcCCHHHHH----HHHHhhcchhhhhc--ccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhcCC
Confidence 5678999999999999999999 99999999999655 67789999999999999999999999999999988721
Q ss_pred eccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCC
Q 026902 86 YAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLP 165 (231)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 165 (231)
.......... . . .....+-.++.+ .+.+....... + ++.|+
T Consensus 146 ~~~~~~~~~~----~---~-------------------------~~~~~~~~~p~a----~s~pgg~~~~~--~-~g~l~ 186 (549)
T KOG4660|consen 146 GGARRAMGLQ----S---G-------------------------TSFLNHFGSPLA----NSPPGGWPRGQ--L-FGMLS 186 (549)
T ss_pred Ccccccchhc----c---c-------------------------chhhhhccchhh----cCCCCCCcCCc--c-eeeec
Confidence 1111110000 0 0 000000000000 00111111121 3 22388
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 166 HETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 166 ~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
+..+..-+...+.-+|.+.. .....-.-.-|+.|.+..++..+...+ |+.+.+ ...-+.+
T Consensus 187 P~~s~~~~~~~~~~~~~~~~-~~~~~~~hq~~~~~~~~~s~a~~~~~~-G~~~s~-~~~v~t~ 246 (549)
T KOG4660|consen 187 PTRSSILLEHISSVDGSSPG-RETPLLNHQRFVEFADNRSYAFSEPRG-GFLISN-SSGVITF 246 (549)
T ss_pred cchhhhhhhcchhccCcccc-ccccchhhhhhhhhccccchhhcccCC-ceecCC-CCceEEe
Confidence 88887777777778888776 333222225677777777775555433 566655 5444444
No 124
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.96 E-value=5.7e-09 Score=78.63 Aligned_cols=79 Identities=24% Similarity=0.461 Sum_probs=68.0
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCccCC--CCCe
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK------PGIAFVEFEDDVQSSMAMQALQGFKITP--QNPM 224 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~------~g~afV~f~~~~~A~~A~~~lng~~i~~--~~~l 224 (231)
...-+||||.+||.++..-+|..+|..|-.-+...+...+ +-+||+.|.+..+|++|+++|||..|+. +..|
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stL 110 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQVCKPVAFATFTSHQFALAAMNALNGVRFDPETGSTL 110 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCccccceEEEEecchHHHHHHHHHhcCeeeccccCcee
Confidence 3446889999999999999999999999877777776543 2489999999999999999999998876 4899
Q ss_pred EEEeccC
Q 026902 225 AITFAKK 231 (231)
Q Consensus 225 ~V~~a~~ 231 (231)
++++||.
T Consensus 111 hiElAKS 117 (284)
T KOG1457|consen 111 HIELAKS 117 (284)
T ss_pred Eeeehhc
Confidence 9999973
No 125
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.91 E-value=7.3e-09 Score=80.62 Aligned_cols=82 Identities=24% Similarity=0.370 Sum_probs=73.1
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
....+|+|.|||+.++++||+ ++|..||.+..+.+.. +|.+.|+|=|.|...++|..|++.+||..+.|+++++
T Consensus 81 ~~~~~v~v~NL~~~V~~~Dl~----eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~ 156 (243)
T KOG0533|consen 81 TRSTKVNVSNLPYGVIDADLK----ELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKI 156 (243)
T ss_pred CCcceeeeecCCcCcchHHHH----HHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeee
Confidence 445789999999999999999 9999999888776666 6999999999999999999999999999999999988
Q ss_pred EeccCccc
Q 026902 85 QYAKSKSD 92 (231)
Q Consensus 85 ~~~~~~~~ 92 (231)
....+...
T Consensus 157 ~~i~~~~~ 164 (243)
T KOG0533|consen 157 EIISSPSQ 164 (243)
T ss_pred EEecCccc
Confidence 87765444
No 126
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.90 E-value=8.4e-09 Score=89.28 Aligned_cols=77 Identities=19% Similarity=0.366 Sum_probs=70.0
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC--------CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCe
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--------KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPM 224 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~--------~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l 224 (231)
.+.++.+||+||+++++++.|...|..||+|.+++++-. .+.++||.|.+..+|.+|+..|+|..+.+ ..+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~-~e~ 249 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME-YEM 249 (877)
T ss_pred CCcccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee-eee
Confidence 456677999999999999999999999999999999753 25689999999999999999999999999 999
Q ss_pred EEEecc
Q 026902 225 AITFAK 230 (231)
Q Consensus 225 ~V~~a~ 230 (231)
++.|+|
T Consensus 250 K~gWgk 255 (877)
T KOG0151|consen 250 KLGWGK 255 (877)
T ss_pred eecccc
Confidence 999986
No 127
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=98.89 E-value=2.4e-09 Score=86.19 Aligned_cols=167 Identities=17% Similarity=0.210 Sum_probs=125.3
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
...+.|++++...+.+.+.. .++..+|.+....+.. +..++|++++.|...+.+..|+.........++.+..
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~----~~~~~~g~~~~~~~S~~~~~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~~~~~ 162 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDD----NFSSEAGLRVDARSSSLEDSLSSKGGLSVHFAGKSQFFAALEESGSKVLDGNKGEK 162 (285)
T ss_pred ccccccccccccchhhcccc----ccchhhcCcccchhhhhccccccccceeeccccHHHHHHHHHhhhccccccccccC
Confidence 57899999999999999877 8888888666654444 6889999999999999999999943334555555544
Q ss_pred EeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEE-ecC
Q 026902 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILF-IQN 163 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-v~n 163 (231)
........... .. .......+..+++ ++|
T Consensus 163 dl~~~~~~~~~------n~--------------------------------------------~~~~~~~~s~~~~~~~~ 192 (285)
T KOG4210|consen 163 DLNTRRGLRPK------NK--------------------------------------------LSRLSSGPSDTIFFVGE 192 (285)
T ss_pred ccccccccccc------ch--------------------------------------------hcccccCccccceeecc
Confidence 33321110000 00 0011222334455 999
Q ss_pred CCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 164 LPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 164 lp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
++..+++++|..+|..+|.|..+++.... .|+|+|+|.+...+..++.. +...+.+ +++.+.+.+
T Consensus 193 ~~f~~~~d~~~~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~-~~~~~~~~~ 262 (285)
T KOG4210|consen 193 LDFSLTRDDLKEHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGG-RPLRLEEDE 262 (285)
T ss_pred cccccchHHHhhhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccC-cccccccCC
Confidence 99999999999999999999999998753 68999999999999999987 8888888 999888754
No 128
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.88 E-value=3.9e-09 Score=89.32 Aligned_cols=76 Identities=16% Similarity=0.291 Sum_probs=69.7
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
..++.|+|.+|...+...||+++|++||.|.-.+++++ -+.|+||++.+.++|.+||..||..+++| +-|.|+.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHG-rmISVEk 481 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHG-RMISVEK 481 (940)
T ss_pred ccccceeeeccccchhhhHHHHHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcc-eeeeeee
Confidence 34567999999999999999999999999999999885 25799999999999999999999999999 9999998
Q ss_pred cc
Q 026902 229 AK 230 (231)
Q Consensus 229 a~ 230 (231)
||
T Consensus 482 aK 483 (940)
T KOG4661|consen 482 AK 483 (940)
T ss_pred cc
Confidence 76
No 129
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.87 E-value=5.3e-09 Score=88.56 Aligned_cols=79 Identities=19% Similarity=0.435 Sum_probs=71.8
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
..+++|||.+|+..+--.||+ .||++||+|.-.+++. +.-.+.|+||++.+.++|.+||..|+.+.+.|+.|.
T Consensus 403 ~~gRNlWVSGLSstTRAtDLK----nlFSKyGKVvGAKVVTNaRsPGaRCYGfVTMSts~eAtkCI~hLHrTELHGrmIS 478 (940)
T KOG4661|consen 403 TLGRNLWVSGLSSTTRATDLK----NLFSKYGKVVGAKVVTNARSPGARCYGFVTMSTSAEATKCIEHLHRTELHGRMIS 478 (940)
T ss_pred ccccceeeeccccchhhhHHH----HHHHHhcceeceeeeecCCCCCcceeEEEEecchHHHHHHHHHhhhhhhcceeee
Confidence 447999999999999999999 9999999999988886 344678999999999999999999999999999999
Q ss_pred EEeccC
Q 026902 84 IQYAKS 89 (231)
Q Consensus 84 v~~~~~ 89 (231)
|..++.
T Consensus 479 VEkaKN 484 (940)
T KOG4661|consen 479 VEKAKN 484 (940)
T ss_pred eeeccc
Confidence 998853
No 130
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.86 E-value=3.6e-09 Score=81.14 Aligned_cols=142 Identities=22% Similarity=0.380 Sum_probs=108.6
Q ss_pred HHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEeccCccchhhhcCCCcchhhhhH
Q 026902 31 YCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKK 108 (231)
Q Consensus 31 ~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~ 108 (231)
+..|+.|-.+..-.+++ .+..++++|+.|.....-.++-..-++..+..+++++.....-.+-
T Consensus 117 ~~~f~~~p~L~ktk~v~~~p~~~~~~~~~~~k~s~a~~k~~~~~~~Kki~~~~VR~a~gtswedP--------------- 181 (290)
T KOG0226|consen 117 PVVFSEYPSLVKTKLVRDRPQPIRPEAFESFKASDALLKAETEKEKKKIGKPPVRLAAGTSWEDP--------------- 181 (290)
T ss_pred hhhhccchhhhhhhhhhcCCCccCcccccCcchhhhhhhhccccccccccCcceeeccccccCCc---------------
Confidence 46777776666656665 4678899999999887777777766677777666665443211110
Q ss_pred HHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEE
Q 026902 109 KQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRM 188 (231)
Q Consensus 109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~ 188 (231)
+.........+||++.|...++++-|...|.+|.......+
T Consensus 182 ---------------------------------------sl~ew~~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akv 222 (290)
T KOG0226|consen 182 ---------------------------------------SLAEWDEDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKV 222 (290)
T ss_pred ---------------------------------------ccccCccccceeecccccccccHHHHHHHHHhccchhhccc
Confidence 01223335567999999999999999999999998888888
Q ss_pred eeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 189 IEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 189 ~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
++++ +||+||.|.++.++..|+..|||..++. ++|+..
T Consensus 223 iRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgs-rpiklR 265 (290)
T KOG0226|consen 223 IRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGS-RPIKLR 265 (290)
T ss_pred cccccccccccceeeeecCHHHHHHHHHhhccccccc-chhHhh
Confidence 8763 6999999999999999999999999998 988753
No 131
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.80 E-value=1.1e-08 Score=88.57 Aligned_cols=80 Identities=21% Similarity=0.406 Sum_probs=73.7
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec------CCCccceEEEEEcCHHHHHHHHHHhCCceeCC
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK------TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD 79 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~------~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g 79 (231)
.+..+++||+||+..++++.|- ..|.+||+|..++++. ..+.+.|+||-|.+-.+|..|+..|+|..+.+
T Consensus 171 DP~TTNlyv~Nlnpsv~E~~ll----~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~ 246 (877)
T KOG0151|consen 171 DPQTTNLYVGNLNPSVDENFLL----RTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVME 246 (877)
T ss_pred CCcccceeeecCCccccHHHHH----HHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeee
Confidence 5778999999999999999998 9999999999999987 25678899999999999999999999999999
Q ss_pred eeeEEEeccC
Q 026902 80 KPMRIQYAKS 89 (231)
Q Consensus 80 ~~l~v~~~~~ 89 (231)
..+++.|++.
T Consensus 247 ~e~K~gWgk~ 256 (877)
T KOG0151|consen 247 YEMKLGWGKA 256 (877)
T ss_pred eeeeeccccc
Confidence 9999999854
No 132
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.78 E-value=6.3e-08 Score=64.85 Aligned_cols=74 Identities=22% Similarity=0.338 Sum_probs=62.2
Q ss_pred CEEEecCCCCCCCHHHHHHHhcc--CCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCC---CCCeEE
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQ--YPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITP---QNPMAI 226 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~--~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~---~~~l~V 226 (231)
+||.|+|||...|.++|.+++.. .|..-.++++.| +.|||||.|.+++.|..-.+.+||..+.. .+...|
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i 81 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEI 81 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEE
Confidence 57999999999999999998763 255566777665 36999999999999999999999998863 378888
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.||+
T Consensus 82 ~yAr 85 (97)
T PF04059_consen 82 SYAR 85 (97)
T ss_pred ehhH
Confidence 8886
No 133
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.76 E-value=4.1e-08 Score=73.23 Aligned_cols=73 Identities=18% Similarity=0.419 Sum_probs=65.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccC-CCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQY-PGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~-g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
....+|+..+|+.+-+..+..+|.+| |.|..+++.++ ++|||||+|++++.|.-|-..||++-+.+ +-|.+.+
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnkrTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e-~lL~c~v 126 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNKRTGNSKGYAFVEFESEEVAKIAAETMNNYLLME-HLLECHV 126 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeecccccCCcCceEEEEeccHHHHHHHHHHhhhhhhhh-heeeeEE
Confidence 44568999999999999999999988 77888888775 47999999999999999999999999998 9888865
No 134
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.73 E-value=6.2e-08 Score=83.89 Aligned_cols=190 Identities=12% Similarity=0.057 Sum_probs=126.2
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
++...+-+.++++..++.|++ ++|.-- .|..+.|.. .+...|.++|.|....++++|++ .|...+-.|.+.
T Consensus 309 ~d~~y~~~~gm~fn~~~nd~r----kfF~g~-~~~~~~l~~~~v~~~~tG~~~v~f~~~~~~q~A~~-rn~~~~~~R~~q 382 (944)
T KOG4307|consen 309 SDKYYNNYKGMEFNNDFNDGR----KFFPGR-NAQSTDLSENRVAPPQTGRKTVMFTPQAPFQNAFT-RNPSDDVNRPFQ 382 (944)
T ss_pred chhheeeecccccccccchhh----hhcCcc-cccccchhhhhcCCCcCCceEEEecCcchHHHHHh-cCchhhhhccee
Confidence 456677788999999999999 888642 233333333 34458999999999999999998 677888888888
Q ss_pred EEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCc---ccccccCCCCCCCCCCEEE
Q 026902 84 IQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTA---ASFRNANTQETAAPNNILF 160 (231)
Q Consensus 84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~l~ 160 (231)
+..+....-... +.+.... .+.. ....+.....+ .....+......+.+..||
T Consensus 383 ~~P~g~~~~~~a---~~~~~~~-------------------~~~~--~~~~hg~p~~~pr~~~~~gq~vp~P~~ag~~ly 438 (944)
T KOG4307|consen 383 TGPPGNLGRNGA---PPFQAGV-------------------PPPV--IQNNHGRPIAPPRAMVRPGQNVPFPGGAGGALY 438 (944)
T ss_pred ecCCCccccccC---ccccccC-------------------CCCc--ccccCCCCCCCcccccCCCCCCCCCCCccceEE
Confidence 876542211111 0000000 0000 00000000000 1111112334556788899
Q ss_pred ecCCCCCCCHHHHHHHhccCCCeeE-EEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 161 IQNLPHETTSSMLEMLFQQYPGFKE-VRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 161 v~nlp~~~t~~~l~~~f~~~g~v~~-v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
|..||..+++.++.+.|+..-.|++ ++|.+. .++.|||.|.+++++..|...-+.+.++. +.|+|.
T Consensus 439 v~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~-r~irv~ 509 (944)
T KOG4307|consen 439 VFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGH-RIIRVD 509 (944)
T ss_pred eccCCccccccchhhhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCc-eEEEee
Confidence 9999999999999999997777766 777654 25789999999999999988877777777 888885
No 135
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=98.72 E-value=2.3e-07 Score=80.49 Aligned_cols=80 Identities=19% Similarity=0.124 Sum_probs=67.4
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEE-EEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFD-VVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~-v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
..+.+|||..||..+++.++- ++|...-.|++ |.|.+ +++.++-|||.|.+++.+.+|...-+.+-++.|.|+
T Consensus 432 ~ag~~lyv~~lP~~t~~~~~v----~~f~~~~~Ved~I~lt~~P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~ir 507 (944)
T KOG4307|consen 432 GAGGALYVFQLPVMTPIVPPV----NKFMGAAAVEDFIELTRLPTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIR 507 (944)
T ss_pred CccceEEeccCCccccccchh----hhhhhhhhhhheeEeccCCcccccchhhheeccccccchhhhcccccccCceEEE
Confidence 347899999999999999998 99988767777 66655 688899999999999999999987777777788899
Q ss_pred EEeccCc
Q 026902 84 IQYAKSK 90 (231)
Q Consensus 84 v~~~~~~ 90 (231)
|.....+
T Consensus 508 v~si~~~ 514 (944)
T KOG4307|consen 508 VDSIADY 514 (944)
T ss_pred eechhhH
Confidence 9876433
No 136
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.70 E-value=2.2e-08 Score=80.96 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=73.1
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
.+.|||++||.++++.+++ +.|++||.|..+.++. +.+++||+||.|.+.+.+.+++. ..-..|.|+.+.|.
T Consensus 97 tkkiFvGG~~~~~~e~~~r----~yfe~~g~v~~~~~~~d~~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevk 171 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFK----DYFEQFGKVADVVIMYDKTTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVK 171 (311)
T ss_pred eeEEEecCcCCCCchHHHh----hhhhccceeEeeEEeecccccccccceeeEeccccccceecc-cceeeecCceeeEe
Confidence 5699999999999999999 9999999998887777 58899999999999999999998 67789999999999
Q ss_pred eccCccchh
Q 026902 86 YAKSKSDCV 94 (231)
Q Consensus 86 ~~~~~~~~~ 94 (231)
.|.++....
T Consensus 172 rA~pk~~~~ 180 (311)
T KOG4205|consen 172 RAIPKEVMQ 180 (311)
T ss_pred eccchhhcc
Confidence 998876643
No 137
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=98.70 E-value=1.4e-08 Score=82.24 Aligned_cols=189 Identities=14% Similarity=0.163 Sum_probs=121.5
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC------CCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT------PKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~------~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
...|.|.||...++.++++ .||...|.|.+++|..+ ......|||.|.+...+.-|-+ |.+++|-++.|
T Consensus 7 ~~vIqvanispsat~dqm~----tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQh-Ltntvfvdral 81 (479)
T KOG4676|consen 7 LGVIQVANISPSATKDQMQ----TLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQH-LTNTVFVDRAL 81 (479)
T ss_pred CceeeecccCchhhHHHHH----HHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHhh-hccceeeeeeE
Confidence 3499999999999999998 99999999999988762 3355799999999999998888 89999999888
Q ss_pred EEEeccCccc-----hhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCc-----cccccc--CCC
Q 026902 83 RIQYAKSKSD-----CVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTA-----ASFRNA--NTQ 150 (231)
Q Consensus 83 ~v~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~--~~~ 150 (231)
.|.+.-.... .....+++.++..... . .....+......+..+ .+..++ ...
T Consensus 82 iv~p~~~~~~p~r~af~~l~~~navprll~p------------d----g~Lp~~~~lt~~nh~p~ailktP~Lp~~~~A~ 145 (479)
T KOG4676|consen 82 IVRPYGDEVIPDRFAFVELADQNAVPRLLPP------------D----GVLPGDRPLTKINHSPNAILKTPELPPQAAAK 145 (479)
T ss_pred EEEecCCCCCccHHHHHhcCcccccccccCC------------C----CccCCCCccccccCCccceecCCCCChHhhhh
Confidence 7765422111 0011111111111000 0 0000000000011100 000000 011
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCcEEEEEecCHHHHHHHHHHhcCCccC
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-KPGIAFVEFEDDVQSSMAMQALQGFKIT 219 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-~~g~afV~f~~~~~A~~A~~~lng~~i~ 219 (231)
......+++++++|+..+...++.+.|..+|.|.+..+--. ...+|.+.|....+...|+. ++|+.+.
T Consensus 146 kleeirRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~~c~~sf~~qts~~halr-~~gre~k 214 (479)
T KOG4676|consen 146 KLEEIRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSSSCSHSFRKQTSSKHALR-SHGRERK 214 (479)
T ss_pred hhHHHHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCcchhhhHhhhhhHHHHHH-hcchhhh
Confidence 12233478999999999999999999999999988766543 34578899988888888886 5676554
No 138
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.66 E-value=5.6e-08 Score=81.59 Aligned_cols=76 Identities=21% Similarity=0.276 Sum_probs=65.1
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
....+|||+|||.+++.++|+ +.|..||+|+...|.. .+.+..||||+|.+.+.++.|+.+ +...+++++|.
T Consensus 286 ~~~~~i~V~nlP~da~~~~l~----~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~ 360 (419)
T KOG0116|consen 286 ADGLGIFVKNLPPDATPAELE----EVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLN 360 (419)
T ss_pred ecccceEeecCCCCCCHHHHH----HHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhc-CccccCCeeEE
Confidence 345669999999999999999 9999999999976665 244459999999999999999994 68888999999
Q ss_pred EEec
Q 026902 84 IQYA 87 (231)
Q Consensus 84 v~~~ 87 (231)
|+--
T Consensus 361 Veek 364 (419)
T KOG0116|consen 361 VEEK 364 (419)
T ss_pred EEec
Confidence 9654
No 139
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.65 E-value=2.1e-07 Score=74.59 Aligned_cols=75 Identities=15% Similarity=0.235 Sum_probs=66.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeE--------EEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCC
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKE--------VRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQN 222 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~--------v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~ 222 (231)
.+..|||.|||.++|.+++.++|+++|.|.. |.|.++. +|-|.|.|...++-..|++.|++..+.| +
T Consensus 133 ~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg-~ 211 (382)
T KOG1548|consen 133 VNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQGKLKGDALCCYIKRESVELAIKILDEDELRG-K 211 (382)
T ss_pred cCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCCCCccCceEEEeecccHHHHHHHHhCcccccC-c
Confidence 4555999999999999999999999998864 6666653 6889999999999999999999999998 9
Q ss_pred CeEEEecc
Q 026902 223 PMAITFAK 230 (231)
Q Consensus 223 ~l~V~~a~ 230 (231)
.|+|+.|+
T Consensus 212 ~~rVerAk 219 (382)
T KOG1548|consen 212 KLRVERAK 219 (382)
T ss_pred EEEEehhh
Confidence 99999886
No 140
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.61 E-value=1.8e-07 Score=72.88 Aligned_cols=72 Identities=24% Similarity=0.353 Sum_probs=65.8
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
..|+|.|||+.++++||.++|..||.+..+.+..++ .|+|-|.|...++|.+|+..+||..+++ +++++...
T Consensus 84 ~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG-~~mk~~~i 159 (243)
T KOG0533|consen 84 TKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDG-RPMKIEII 159 (243)
T ss_pred ceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCCCCCCccceeeecchHhHHHHHHHhcCcccCC-ceeeeEEe
Confidence 569999999999999999999999999998888864 5799999999999999999999999998 99888754
No 141
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=98.61 E-value=1.7e-06 Score=70.31 Aligned_cols=156 Identities=17% Similarity=0.207 Sum_probs=104.7
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhcc----CCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQ----YGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~----~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..+..|..++||...++.+|. .+|.- -|.+. +-+...|+.-|+|.|.|.++|.-.-|++ .+...+.+|.+
T Consensus 58 ~~~vvvRaRglpwq~Sd~~ia----~ff~gl~ia~gg~a-KOG~~qgrRnge~lvrf~d~e~Rdlalk-Rhkhh~g~ryi 131 (508)
T KOG1365|consen 58 DDNVVVRARGLPWQSSDQDIA----RFFKGLNIANGGRA-LCLNAQGRRNGEALVRFVDPEGRDLALK-RHKHHMGTRYI 131 (508)
T ss_pred CcceEEEecCCCCCcccCCHH----HHHhhhhcccccee-eeehhhhccccceEEEecCchhhhhhhH-hhhhhccCCce
Confidence 345667789999999999997 55543 22222 2233357788999999999999999998 68788888988
Q ss_pred EEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEec
Q 026902 83 RIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQ 162 (231)
Q Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 162 (231)
.|-.+....-... +..++++..+ +.... ..-.+-++
T Consensus 132 evYka~ge~f~~i------------------------------------agg~s~e~~~------flsk~--~qvivRmR 167 (508)
T KOG1365|consen 132 EVYKATGEEFLKI------------------------------------AGGTSNEAAP------FLSKE--NQVIVRMR 167 (508)
T ss_pred eeeccCchhheEe------------------------------------cCCccccCCC------CCCcc--cceEEEec
Confidence 8866543222111 0001111111 11111 12236678
Q ss_pred CCCCCCCHHHHHHHhccC----CCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHH
Q 026902 163 NLPHETTSSMLEMLFQQY----PGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQA 212 (231)
Q Consensus 163 nlp~~~t~~~l~~~f~~~----g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~ 212 (231)
+||+++++.|+..+|.+- |....+.+++. ..|-|||.|.++++|+.|+..
T Consensus 168 GLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpdgrpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 168 GLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPDGRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred CCCCCcchHHHHHhcCCCCcccCCccceEEEECCCCCcccceEEEecCHHHHHHHHHH
Confidence 999999999999999632 34455666552 268999999999999999964
No 142
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.60 E-value=3.3e-08 Score=75.39 Aligned_cols=69 Identities=26% Similarity=0.472 Sum_probs=64.0
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 158 ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 158 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.+||++||+.+.+.||..+|..||.+..+.+. .||+||+|.++-+|..|+.-|||..+.+ -.+-|+|++
T Consensus 3 rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk---~gf~fv~fed~rda~Dav~~l~~~~l~~-e~~vve~~r 71 (216)
T KOG0106|consen 3 RVYIGRLPYRARERDVERFFKGYGKIPDADMK---NGFGFVEFEDPRDADDAVHDLDGKELCG-ERLVVEHAR 71 (216)
T ss_pred ceeecccCCccchhHHHHHHhhccccccceee---cccceeccCchhhhhcccchhcCceecc-eeeeeeccc
Confidence 48999999999999999999999999998883 4889999999999999999999999999 669998886
No 143
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.59 E-value=1.2e-07 Score=74.07 Aligned_cols=80 Identities=15% Similarity=0.250 Sum_probs=71.4
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..+.+.+||+|+.+.++.++++ ..|+.||.|..+.++. ++.++|||||.|.+.+.+..|+. |||..+.|+.+
T Consensus 98 ~~d~~sv~v~nvd~~~t~~~~e----~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i 172 (231)
T KOG4209|consen 98 EVDAPSVWVGNVDFLVTLTKIE----LHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAI 172 (231)
T ss_pred ccCCceEEEeccccccccchhh----heeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCcccccccc
Confidence 4568999999999999999998 9999999998766666 47799999999999999999999 99999999999
Q ss_pred EEEeccCc
Q 026902 83 RIQYAKSK 90 (231)
Q Consensus 83 ~v~~~~~~ 90 (231)
.+.+....
T Consensus 173 ~vt~~r~~ 180 (231)
T KOG4209|consen 173 EVTLKRTN 180 (231)
T ss_pred eeeeeeee
Confidence 99876544
No 144
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.45 E-value=8.7e-07 Score=60.68 Aligned_cols=59 Identities=19% Similarity=0.247 Sum_probs=40.6
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCC
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGF 216 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~ 216 (231)
..|+|.+++..++.++|++.|++||.|.+|.+.++.. .|+|.|.+++.|+.|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~-~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT-EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S-EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC-EEEEEECCcchHHHHHHHHHhc
Confidence 4688999999999999999999999999999999874 8999999999999998887654
No 145
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.44 E-value=1.2e-06 Score=56.10 Aligned_cols=68 Identities=22% Similarity=0.434 Sum_probs=46.5
Q ss_pred CEEEecCCCCCCCHHHHH----HHhccCCC-eeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 157 NILFIQNLPHETTSSMLE----MLFQQYPG-FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~----~~f~~~g~-v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
..|+|.|||...+...|+ ++...+|. |..| . .+.|+|.|.+++.|.+|..-|+|..+.| +.|.|+|+.
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v---~--~~tAilrF~~~~~A~RA~KRmegEdVfG-~kI~v~~~~ 75 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV---S--GGTAILRFPNQEFAERAQKRMEGEDVFG-NKISVSFSP 75 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-------TT-EEEEESSHHHHHHHHHHHTT--SSS-S--EEESS-
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE---e--CCEEEEEeCCHHHHHHHHHhhccccccc-ceEEEEEcC
Confidence 358999999988876655 45567775 4433 2 3679999999999999999999999999 999999974
No 146
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.41 E-value=5.4e-07 Score=75.77 Aligned_cols=73 Identities=27% Similarity=0.420 Sum_probs=62.2
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC---C--CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA---K--PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~---~--~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
..+|||+|||++++.++|.++|.+||.|+...|..- . ..||||+|.+-+.++.|+.+- -..+++ ++|.|+-.+
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~-~kl~Veek~ 365 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRSPGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG-RKLNVEEKR 365 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEeccCCCcCceEEEEEeecchhhhhhhcC-ccccCC-eeEEEEecc
Confidence 345999999999999999999999999999777651 1 279999999999999999764 778888 999998654
No 147
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.39 E-value=1.6e-07 Score=70.71 Aligned_cols=75 Identities=21% Similarity=0.251 Sum_probs=67.4
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK---PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~---~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
.+..++|||.|+-..++++-|.++|-+-|+|..|.|..++ ..||||.|.+...-+-|++.+||-.+.+ ..++|.+
T Consensus 6 ae~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~~~kFa~v~f~~E~sv~~a~~L~ng~~l~~-~e~q~~~ 83 (267)
T KOG4454|consen 6 AEMDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQEQKFAYVFFPNENSVQLAGQLENGDDLEE-DEEQRTL 83 (267)
T ss_pred cchhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccCCCceeeeecccccchhhhhhhcccchhcc-chhhccc
Confidence 3466889999999999999999999999999999998753 3499999999999999999999999998 8888765
No 148
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.38 E-value=7.1e-07 Score=69.68 Aligned_cols=74 Identities=22% Similarity=0.360 Sum_probs=66.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
....+|++|+.+.+|.+++..+|+.||.+..+.++.+ .+||+||+|.+.+....|+. |||..|.+ +.+.|.+.
T Consensus 100 d~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~-~~i~vt~~ 177 (231)
T KOG4209|consen 100 DAPSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKFRGHPKGFAYVEFSSYELVEEAYK-LDGSEIPG-PAIEVTLK 177 (231)
T ss_pred CCceEEEeccccccccchhhheeeccCCccceeeeccccCCCcceeEEEecccHhhhHHHhh-cCCccccc-ccceeeee
Confidence 4456999999999999999999999999998888875 37899999999999999998 99999999 99999876
Q ss_pred c
Q 026902 230 K 230 (231)
Q Consensus 230 ~ 230 (231)
+
T Consensus 178 r 178 (231)
T KOG4209|consen 178 R 178 (231)
T ss_pred e
Confidence 4
No 149
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.36 E-value=4.3e-07 Score=69.94 Aligned_cols=79 Identities=16% Similarity=0.328 Sum_probs=67.5
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
...+-+||-|.|..+++.+-|- ..|.+|-....-++++ +++++||+||.|.++.++..|+..|+|.-++.|+|
T Consensus 187 ~~~DfRIfcgdlgNevnd~vl~----raf~Kfpsf~~akviRdkRTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpi 262 (290)
T KOG0226|consen 187 DEDDFRIFCGDLGNEVNDDVLA----RAFKKFPSFQKAKVIRDKRTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPI 262 (290)
T ss_pred ccccceeecccccccccHHHHH----HHHHhccchhhccccccccccccccceeeeecCHHHHHHHHHhhcccccccchh
Confidence 3557899999999999999988 8888876554444444 89999999999999999999999999999999999
Q ss_pred EEEecc
Q 026902 83 RIQYAK 88 (231)
Q Consensus 83 ~v~~~~ 88 (231)
+++-+.
T Consensus 263 klRkS~ 268 (290)
T KOG0226|consen 263 KLRKSE 268 (290)
T ss_pred Hhhhhh
Confidence 887654
No 150
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=98.12 E-value=6.1e-06 Score=66.17 Aligned_cols=83 Identities=22% Similarity=0.401 Sum_probs=65.5
Q ss_pred CCEEEEeCCCCccCHHHHHHHHH--HhhccCCCeEEEEEec-C---CCccceE--EEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLY--CLFSQYGRIFDVVALK-T---PKLRGQA--WVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~--~~f~~~g~v~~v~~~~-~---~~~~g~a--fV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
-.-+||-+||..+-.+++...|. ++|.+||.|..|.+-+ + ...-+.+ ||+|.+.|+|.+||+..+|..+.||
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~DGr 193 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLDGR 193 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhccccccCc
Confidence 35689999999987777433332 6899999999998866 2 1112224 9999999999999999999999999
Q ss_pred eeEEEeccCcc
Q 026902 81 PMRIQYAKSKS 91 (231)
Q Consensus 81 ~l~v~~~~~~~ 91 (231)
.|+..|...+.
T Consensus 194 ~lkatYGTTKY 204 (480)
T COG5175 194 VLKATYGTTKY 204 (480)
T ss_pred eEeeecCchHH
Confidence 99999987653
No 151
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=98.09 E-value=3.5e-05 Score=55.13 Aligned_cols=81 Identities=20% Similarity=0.342 Sum_probs=59.6
Q ss_pred CCCCCEEEEeCCC-----CccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 6 IPPNQTIYIKNLN-----EKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 6 ~~~~~~v~v~nLp-----~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
.++..||.|.-+. ...-.++|.+.|.+.|..||.+.-+++. .+.-+|+|.+-++|.+|+. ++|..+.|+
T Consensus 24 GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv-----~~~mwVTF~dg~sALaals-~dg~~v~g~ 97 (146)
T PF08952_consen 24 GPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFV-----GDTMWVTFRDGQSALAALS-LDGIQVNGR 97 (146)
T ss_dssp --TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEE-----TTCEEEEESSCHHHHHHHH-GCCSEETTE
T ss_pred CCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEe-----CCeEEEEECccHHHHHHHc-cCCcEECCE
Confidence 4788899998777 3344667777888999999998877773 4579999999999999999 999999999
Q ss_pred eeEEEeccCccc
Q 026902 81 PMRIQYAKSKSD 92 (231)
Q Consensus 81 ~l~v~~~~~~~~ 92 (231)
.|+|..-.+.+.
T Consensus 98 ~l~i~LKtpdW~ 109 (146)
T PF08952_consen 98 TLKIRLKTPDWL 109 (146)
T ss_dssp EEEEEE------
T ss_pred EEEEEeCCccHH
Confidence 999988665544
No 152
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=98.03 E-value=2.1e-05 Score=67.14 Aligned_cols=79 Identities=16% Similarity=0.254 Sum_probs=66.3
Q ss_pred CCCCEEEEeCCCCc--cCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCC-ee
Q 026902 7 PPNQTIYIKNLNEK--IKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD-KP 81 (231)
Q Consensus 7 ~~~~~v~v~nLp~~--~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g-~~ 81 (231)
--..+|+|-|+|.- ..-+-|+..|..+|+++|+|..+.++. .|..+||.|++|.++.+|+.|++.|||..+.- ++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 34678999999963 446778888889999999999998886 46699999999999999999999999988864 45
Q ss_pred eEEE
Q 026902 82 MRIQ 85 (231)
Q Consensus 82 l~v~ 85 (231)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 5554
No 153
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=98.01 E-value=2.6e-05 Score=53.44 Aligned_cols=69 Identities=22% Similarity=0.355 Sum_probs=43.7
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCC-----ceeCCeeeEE
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQN-----FPFYDKPMRI 84 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g-----~~~~g~~l~v 84 (231)
..|.+.+++..++.++|+ +.|+.||.|..|.+ ...-..|||.|.+++.|+.|+..+.. ..+.+..+.+
T Consensus 2 ~il~~~g~~~~~~re~iK----~~f~~~g~V~yVD~---~~G~~~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~ 74 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIK----EAFSQFGEVAYVDF---SRGDTEGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTL 74 (105)
T ss_dssp -EEEEEE--SS--HHHHH----HHT-SS--EEEEE-----TT-SEEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEE
T ss_pred eEEEEecCCCCcCHHHHH----HHHHhcCCcceEEe---cCCCCEEEEEECCcchHHHHHHHHHhccCCceEEcCceEEE
Confidence 568899999999999999 99999999999988 34455899999999999999987643 3455555544
Q ss_pred E
Q 026902 85 Q 85 (231)
Q Consensus 85 ~ 85 (231)
.
T Consensus 75 ~ 75 (105)
T PF08777_consen 75 E 75 (105)
T ss_dssp E
T ss_pred E
Confidence 3
No 154
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.83 E-value=5.8e-05 Score=44.85 Aligned_cols=52 Identities=19% Similarity=0.370 Sum_probs=43.0
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHH
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~ 69 (231)
+.|-|.+.|....+.-| ..|..||+|..+.+ .....+++|.|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~~vl-----~~F~~fGeI~~~~~---~~~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEEVL-----EHFASFGEIVDIYV---PESTNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHHHH-----HHHHhcCCEEEEEc---CCCCcEEEEEECCHHHHHhhC
Confidence 56778888876655444 78889999999988 566889999999999999985
No 155
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.82 E-value=2.5e-05 Score=63.24 Aligned_cols=78 Identities=19% Similarity=0.316 Sum_probs=66.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeE--------EEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccC
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE--------VRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKIT 219 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~--------v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~ 219 (231)
.....+|||-+||.++++++|..+|.++|.|.. +.+-++ .++-|.|.|.++..|+.|+.-+++..+.
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~agkdf~ 142 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAGKDFC 142 (351)
T ss_pred ccccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcccccc
Confidence 445567999999999999999999999998754 233332 3689999999999999999999999999
Q ss_pred CCCCeEEEeccC
Q 026902 220 PQNPMAITFAKK 231 (231)
Q Consensus 220 ~~~~l~V~~a~~ 231 (231)
+ ++|+|.+|++
T Consensus 143 g-n~ikvs~a~~ 153 (351)
T KOG1995|consen 143 G-NTIKVSLAER 153 (351)
T ss_pred C-CCchhhhhhh
Confidence 9 9999999874
No 156
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.81 E-value=2e-05 Score=67.69 Aligned_cols=83 Identities=19% Similarity=0.294 Sum_probs=68.0
Q ss_pred CCCCCCCCCCEEEecCCCCCCCHHHHHHHhc-cCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCC--CCe
Q 026902 148 NTQETAAPNNILFIQNLPHETTSSMLEMLFQ-QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ--NPM 224 (231)
Q Consensus 148 ~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~-~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~--~~l 224 (231)
++.....+++.|||.||-..+|.-.|+.++. ..|.|...+|-.- +..|||.|.+.++|.+...+|||-.|..+ +.|
T Consensus 436 pSPsR~~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~WmDkI-KShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L 514 (718)
T KOG2416|consen 436 PSPSRKEPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEFWMDKI-KSHCYVSYSSVEEAAATREALHNVQWPPSNPKHL 514 (718)
T ss_pred CCCCCCCccceEeeecccccchHHHHHHHHhhccCchHHHHHHHh-hcceeEecccHHHHHHHHHHHhccccCCCCCcee
Confidence 3444777889999999999999999999999 5556666655333 35799999999999999999999988543 999
Q ss_pred EEEeccC
Q 026902 225 AITFAKK 231 (231)
Q Consensus 225 ~V~~a~~ 231 (231)
.+.|+++
T Consensus 515 ~adf~~~ 521 (718)
T KOG2416|consen 515 IADFVRA 521 (718)
T ss_pred Eeeecch
Confidence 9999763
No 157
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.77 E-value=0.00012 Score=49.35 Aligned_cols=72 Identities=11% Similarity=0.148 Sum_probs=50.7
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCCeeEEE------------EeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCC
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVR------------MIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNP 223 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~------------~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~ 223 (231)
...|.|-+.|.. .-..+.++|++||+|.+.. -......+.-|+|.++.+|++||+ -||..++++--
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i~~g~~m 83 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTIFSGSLM 83 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEEETTCEE
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeEEcCcEE
Confidence 345888899877 5577788999999998875 222334799999999999999996 79999988334
Q ss_pred eEEEec
Q 026902 224 MAITFA 229 (231)
Q Consensus 224 l~V~~a 229 (231)
+-|.+.
T Consensus 84 vGV~~~ 89 (100)
T PF05172_consen 84 VGVKPC 89 (100)
T ss_dssp EEEEE-
T ss_pred EEEEEc
Confidence 445554
No 158
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.73 E-value=0.00035 Score=56.33 Aligned_cols=75 Identities=11% Similarity=0.330 Sum_probs=61.2
Q ss_pred CCCCEEEecCCCCCCCHHHHH------HHhccCCCeeEEEEeeCC------CcE--EEEEecCHHHHHHHHHHhcCCccC
Q 026902 154 APNNILFIQNLPHETTSSMLE------MLFQQYPGFKEVRMIEAK------PGI--AFVEFEDDVQSSMAMQALQGFKIT 219 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~------~~f~~~g~v~~v~~~~~~------~g~--afV~f~~~~~A~~A~~~lng~~i~ 219 (231)
...+.+||-+||+.+-.++.. ++|.+||.|..+.+-+.- .+. .||+|.+-++|.+||...+|.-.+
T Consensus 112 vQKNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst~~h~gvYITy~~kedAarcIa~vDgs~~D 191 (480)
T COG5175 112 VQKNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNSTASHAGVYITYSTKEDAARCIAEVDGSLLD 191 (480)
T ss_pred eecceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccccccceEEEEecchHHHHHHHHHhcccccc
Confidence 345668999999988776632 679999999998886521 122 599999999999999999999999
Q ss_pred CCCCeEEEec
Q 026902 220 PQNPMAITFA 229 (231)
Q Consensus 220 ~~~~l~V~~a 229 (231)
| +.|+..|.
T Consensus 192 G-r~lkatYG 200 (480)
T COG5175 192 G-RVLKATYG 200 (480)
T ss_pred C-ceEeeecC
Confidence 9 99998875
No 159
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.71 E-value=0.00016 Score=61.92 Aligned_cols=74 Identities=14% Similarity=0.263 Sum_probs=61.4
Q ss_pred CCCCEEEecCCCCCCC------HHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCC
Q 026902 154 APNNILFIQNLPHETT------SSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNP 223 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t------~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~ 223 (231)
.-...|.|-|+|.--. ..-|.++|+++|.+....++.+ .+|+.|++|.+..+|+.|++.|||+.+.-+++
T Consensus 56 g~D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHt 135 (698)
T KOG2314|consen 56 GFDSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHT 135 (698)
T ss_pred CcceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCccCCeeeEEEEEecChhhHHHHHHhcccceecccce
Confidence 4556788999996432 3556688999999999999864 47999999999999999999999999998777
Q ss_pred eEEE
Q 026902 224 MAIT 227 (231)
Q Consensus 224 l~V~ 227 (231)
+.|.
T Consensus 136 f~v~ 139 (698)
T KOG2314|consen 136 FFVR 139 (698)
T ss_pred EEee
Confidence 7764
No 160
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.70 E-value=0.00011 Score=43.73 Aligned_cols=52 Identities=8% Similarity=0.257 Sum_probs=41.7
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHH
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAM 210 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~ 210 (231)
+.|-|.+.+....+ .+..+|..||.|..+.+... ..+.+|+|.+..+|.+|+
T Consensus 2 ~wI~V~Gf~~~~~~-~vl~~F~~fGeI~~~~~~~~-~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAE-EVLEHFASFGEIVDIYVPES-TNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHH-HHHHHHHhcCCEEEEEcCCC-CcEEEEEECCHHHHHhhC
Confidence 45778888866664 45558889999999988743 468999999999999985
No 161
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.68 E-value=3.1e-05 Score=62.54 Aligned_cols=79 Identities=23% Similarity=0.369 Sum_probs=69.3
Q ss_pred CCEEE-EeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 9 NQTIY-IKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 9 ~~~v~-v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
..++| |+||++.+++++|. ..|..+|.|..++++. ++..+|+|||.|.....+..++.. +...+.++++.+
T Consensus 184 s~~~~~~~~~~f~~~~d~~~----~~~~~~~~i~~~r~~~~~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~ 258 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLK----EHFVSSGEITSVRLPTDEESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRL 258 (285)
T ss_pred cccceeecccccccchHHHh----hhccCcCcceeeccCCCCCccchhhhhhhhhhhchhHHHHhhc-ccCcccCccccc
Confidence 34455 99999999999998 9999999999998887 688999999999999999999986 788899999999
Q ss_pred EeccCccc
Q 026902 85 QYAKSKSD 92 (231)
Q Consensus 85 ~~~~~~~~ 92 (231)
.+..+...
T Consensus 259 ~~~~~~~~ 266 (285)
T KOG4210|consen 259 EEDEPRPK 266 (285)
T ss_pred ccCCCCcc
Confidence 98766543
No 162
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=97.66 E-value=6.1e-05 Score=61.08 Aligned_cols=82 Identities=20% Similarity=0.304 Sum_probs=71.1
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEE--------EEEec---CCCccceEEEEEcCHHHHHHHHHHhCC
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFD--------VVALK---TPKLRGQAWVVFSEVTAASNAVRQMQN 74 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~--------v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g 74 (231)
....-+|||.+||-.+++++|. .+|.++|.|.. |.+.+ |+.+++-|.|.|.++..|+.|+.-+++
T Consensus 63 ~s~~~ti~v~g~~d~~~~~~~~----~~f~qcg~ikrnK~t~kPki~~y~dkeT~~~KGeatvS~~D~~~akaai~~~ag 138 (351)
T KOG1995|consen 63 KSDNETIFVWGCPDSVCENDNA----DFFLQCGVIKRNKRTGKPKIKIYTDKETGAPKGEATVSYEDPPAAKAAIEWFAG 138 (351)
T ss_pred ccccccceeeccCccchHHHHH----HHHhhcceeccCCCCCCcchhccccccccCcCCceeeeecChhhhhhhhhhhcc
Confidence 4567899999999999999998 99999987754 33333 788999999999999999999999999
Q ss_pred ceeCCeeeEEEeccCcc
Q 026902 75 FPFYDKPMRIQYAKSKS 91 (231)
Q Consensus 75 ~~~~g~~l~v~~~~~~~ 91 (231)
..|.+.+|+|..+..++
T Consensus 139 kdf~gn~ikvs~a~~r~ 155 (351)
T KOG1995|consen 139 KDFCGNTIKVSLAERRT 155 (351)
T ss_pred ccccCCCchhhhhhhcc
Confidence 99999999998887665
No 163
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=97.61 E-value=5.7e-05 Score=64.95 Aligned_cols=81 Identities=19% Similarity=0.315 Sum_probs=68.8
Q ss_pred CCCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhc-cCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeC--
Q 026902 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFS-QYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFY-- 78 (231)
Q Consensus 2 ~~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~-~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~-- 78 (231)
+++....++.|||.||=..+|.-+|+ .++. ..|.|.+..| .+-+..|||.|.+.++|...+.+|||..|.
T Consensus 437 SPsR~~~SnvlhI~nLvRPFTlgQLk----elL~rtgg~Vee~Wm---DkIKShCyV~yss~eEA~atr~AlhnV~WP~s 509 (718)
T KOG2416|consen 437 SPSRKEPSNVLHIDNLVRPFTLGQLK----ELLGRTGGNVEEFWM---DKIKSHCYVSYSSVEEAAATREALHNVQWPPS 509 (718)
T ss_pred CCCCCCccceEeeecccccchHHHHH----HHHhhccCchHHHHH---HHhhcceeEecccHHHHHHHHHHHhccccCCC
Confidence 34566789999999999999999999 9888 4677777766 556788999999999999999999999986
Q ss_pred -CeeeEEEeccC
Q 026902 79 -DKPMRIQYAKS 89 (231)
Q Consensus 79 -g~~l~v~~~~~ 89 (231)
++.|.+.|...
T Consensus 510 NPK~L~adf~~~ 521 (718)
T KOG2416|consen 510 NPKHLIADFVRA 521 (718)
T ss_pred CCceeEeeecch
Confidence 57888888743
No 164
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=97.59 E-value=0.00028 Score=47.67 Aligned_cols=75 Identities=13% Similarity=0.215 Sum_probs=52.7
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEE-Eec---------CCCccceEEEEEcCHHHHHHHHHHhCCce
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVV-ALK---------TPKLRGQAWVVFSEVTAASNAVRQMQNFP 76 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~-~~~---------~~~~~g~afV~f~~~e~A~~a~~~l~g~~ 76 (231)
...+.|.|-+.|...+..-| +.|++||.|.+.. +.+ ......+-.|+|.++.+|.+|+. .||..
T Consensus 4 ~~~~wVtVFGfp~~~~~~Vl-----~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~NWi~I~Y~~~~~A~rAL~-~NG~i 77 (100)
T PF05172_consen 4 DSETWVTVFGFPPSASNQVL-----RHFSSFGTILEHFEVLRSSSGINPYPIPSGGNWIHITYDNPLSAQRALQ-KNGTI 77 (100)
T ss_dssp GGCCEEEEE---GGGHHHHH-----HHHHCCS-EECEEGGG----------E-CCTTEEEEEESSHHHHHHHHT-TTTEE
T ss_pred cCCeEEEEEccCHHHHHHHH-----HHHHhcceEEEeecccccccccccccCCCCCCEEEEECCCHHHHHHHHH-hCCeE
Confidence 45677888899998555444 8999999998774 111 13356799999999999999999 79999
Q ss_pred eCCe-eeEEEec
Q 026902 77 FYDK-PMRIQYA 87 (231)
Q Consensus 77 ~~g~-~l~v~~~ 87 (231)
+.|. .+-|.+.
T Consensus 78 ~~g~~mvGV~~~ 89 (100)
T PF05172_consen 78 FSGSLMVGVKPC 89 (100)
T ss_dssp ETTCEEEEEEE-
T ss_pred EcCcEEEEEEEc
Confidence 9885 4556665
No 165
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.55 E-value=5.3e-05 Score=58.69 Aligned_cols=67 Identities=16% Similarity=0.247 Sum_probs=58.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----------------CcEEEEEecCHHHHHHHHHHhcCCc
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----------------PGIAFVEFEDDVQSSMAMQALQGFK 217 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----------------~g~afV~f~~~~~A~~A~~~lng~~ 217 (231)
-.-.||+++||+.+...-|+++|+.||.|-.|.+.+.. -..|.|+|..-..|..+...|||.+
T Consensus 73 k~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~ 152 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTP 152 (278)
T ss_pred cceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCc
Confidence 44679999999999999999999999999999998731 1248899999999999999999999
Q ss_pred cCCC
Q 026902 218 ITPQ 221 (231)
Q Consensus 218 i~~~ 221 (231)
|+|.
T Consensus 153 Iggk 156 (278)
T KOG3152|consen 153 IGGK 156 (278)
T ss_pred cCCC
Confidence 9983
No 166
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.51 E-value=5.5e-05 Score=58.67 Aligned_cols=58 Identities=14% Similarity=0.277 Sum_probs=50.3
Q ss_pred HHHHHHhc-cCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 171 SMLEMLFQ-QYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 171 ~~l~~~f~-~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
+|+...|+ +||.|+.+.+-.+. .|-++|.|...++|++|++.|||..|.+ ++|...|.
T Consensus 83 Ed~f~E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G-~pi~ae~~ 145 (260)
T KOG2202|consen 83 EDVFTELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNG-RPIHAELS 145 (260)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccC-Ccceeeec
Confidence 66666777 99999998776642 5789999999999999999999999999 99998874
No 167
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=97.50 E-value=0.0009 Score=47.47 Aligned_cols=77 Identities=29% Similarity=0.393 Sum_probs=60.2
Q ss_pred CCCCCEEEEeCCCCccCH-HHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 6 IPPNQTIYIKNLNEKIKK-EELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te-~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
.++-.+|.|+.|...+.. +|+ ..+...++.||+|.+|-+ ..+-.|.|.|.+..+|.+|+.+++. ...|..+..
T Consensus 83 epPMsTIVVRWlkknm~~~edl-~sV~~~Ls~fGpI~SVT~----cGrqsavVvF~d~~SAC~Av~Af~s-~~pgtm~qC 156 (166)
T PF15023_consen 83 EPPMSTIVVRWLKKNMQPTEDL-KSVIQRLSVFGPIQSVTL----CGRQSAVVVFKDITSACKAVSAFQS-RAPGTMFQC 156 (166)
T ss_pred CCCceeEEeehhhhcCChHHHH-HHHHHHHHhcCCcceeee----cCCceEEEEehhhHHHHHHHHhhcC-CCCCceEEe
Confidence 466778999998887653 455 345567788999999866 3577899999999999999998776 667778877
Q ss_pred Eecc
Q 026902 85 QYAK 88 (231)
Q Consensus 85 ~~~~ 88 (231)
.|-.
T Consensus 157 sWqq 160 (166)
T PF15023_consen 157 SWQQ 160 (166)
T ss_pred eccc
Confidence 7643
No 168
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=97.47 E-value=0.00035 Score=54.28 Aligned_cols=84 Identities=19% Similarity=0.266 Sum_probs=70.5
Q ss_pred HHHHHHHHHhCCceeCCeeeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcc
Q 026902 63 TAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAA 142 (231)
Q Consensus 63 e~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 142 (231)
..|..|...|++....|+.++|.|+.
T Consensus 5 t~ae~ak~eLd~~~~~~~~lr~rfa~------------------------------------------------------ 30 (275)
T KOG0115|consen 5 TLAEIAKRELDGRFPKGRSLRVRFAM------------------------------------------------------ 30 (275)
T ss_pred cHHHHHHHhcCCCCCCCCceEEEeec------------------------------------------------------
Confidence 35777888899999999999999973
Q ss_pred cccccCCCCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHh
Q 026902 143 SFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQAL 213 (231)
Q Consensus 143 ~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~l 213 (231)
...|||.||..-++-+.+.+.|+.||+|....+.-+ ..+-++|.|...-.|.+|+..+
T Consensus 31 -------------~a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 31 -------------HAELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred -------------cceEEEEecchhhhhHHHHHhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHh
Confidence 245999999999999999999999999977555443 2467999999988888888776
No 169
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=97.43 E-value=0.0001 Score=57.11 Aligned_cols=70 Identities=21% Similarity=0.330 Sum_probs=60.2
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC-----------CCcc----ceEEEEEcCHHHHHHHHHHh
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT-----------PKLR----GQAWVVFSEVTAASNAVRQM 72 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~-----------~~~~----g~afV~f~~~e~A~~a~~~l 72 (231)
....||+++||..++-.-|+ ++|+.||.|-.|.|-.. |.+. .-|+|+|.+-..|+.+-..|
T Consensus 73 k~GVvylS~IPp~m~~~rlR----eil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~L 148 (278)
T KOG3152|consen 73 KTGVVYLSNIPPYMDPVRLR----EILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELL 148 (278)
T ss_pred cceEEEeccCCCccCHHHHH----HHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHh
Confidence 56899999999999999998 99999999999988651 1122 25789999999999999999
Q ss_pred CCceeCCee
Q 026902 73 QNFPFYDKP 81 (231)
Q Consensus 73 ~g~~~~g~~ 81 (231)
|+..|+|+.
T Consensus 149 nn~~Iggkk 157 (278)
T KOG3152|consen 149 NNTPIGGKK 157 (278)
T ss_pred CCCccCCCC
Confidence 999999975
No 170
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.43 E-value=1.6e-05 Score=70.81 Aligned_cols=158 Identities=16% Similarity=0.111 Sum_probs=111.0
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
.+..++.|+.+...+.++ ....|..+|.|+.|+... .-....++++.+..+.++..|.. ..+-.+.++...+.
T Consensus 571 ~~e~~s~~v~p~~~~ke~---~~~~~k~~~~vekv~~p~~g~k~h~q~~~~~~~s~~~~~esat~-pa~~~~a~~~~av~ 646 (881)
T KOG0128|consen 571 RREKESTNVYPEQQKKEI---QRRQFKGEGNVEKVNGPKRGFKAHEQPQQQKVQSKHGSAESATV-PAGGALANRSAAVG 646 (881)
T ss_pred hhhhcccCCCcchhhHHh---hHHHhhcccccccccCccccccccccchhhhhhccccchhhccc-ccccccCCccccCC
Confidence 345566677766665543 238889999999998876 22344489999999999998887 67777777777776
Q ss_pred eccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCC
Q 026902 86 YAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLP 165 (231)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp 165 (231)
.+.+...... .-+ .......-.++|++||+
T Consensus 647 ~ad~~~~~~~----~kv----------------------------------------------s~n~~R~~~~~fvsnl~ 676 (881)
T KOG0128|consen 647 LADAEEKEEN----FKV----------------------------------------------SPNEIRDLIKIFVSNLS 676 (881)
T ss_pred CCCchhhhhc----cCc----------------------------------------------CchHHHHHHHHHHhhcc
Confidence 6544331100 000 00011122448999999
Q ss_pred CCCCHHHHHHHhccCCCeeEEEEee----C-CCcEEEEEecCHHHHHHHHHHhcCCccCC
Q 026902 166 HETTSSMLEMLFQQYPGFKEVRMIE----A-KPGIAFVEFEDDVQSSMAMQALQGFKITP 220 (231)
Q Consensus 166 ~~~t~~~l~~~f~~~g~v~~v~~~~----~-~~g~afV~f~~~~~A~~A~~~lng~~i~~ 220 (231)
..+.+.||...|..+|.+..+.+.- + -+|+|++.|..++++.+|+....+..++.
T Consensus 677 ~~~~~~dl~~~~~~~~~~e~vqi~~h~n~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK 736 (881)
T KOG0128|consen 677 PKMSEEDLSERFSPSGTIEVVQIVIHKNEKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGK 736 (881)
T ss_pred hhhcCchhhhhcCccchhhhHHHHHHhhccccccceeeEeecCCchhhhhhhhhhhhhhh
Confidence 9999999999999999988876652 1 26999999999999999998766655443
No 171
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.42 E-value=0.00012 Score=60.62 Aligned_cols=65 Identities=22% Similarity=0.323 Sum_probs=56.4
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC------------------CCcEEEEEecCHHHHHHHHHHhcC
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA------------------KPGIAFVEFEDDVQSSMAMQALQG 215 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~------------------~~g~afV~f~~~~~A~~A~~~lng 215 (231)
.+.++|.+.|||.+-.-+.|.++|+.+|.|+.|+|..- .+-+|+|+|++.+.|.+|...||.
T Consensus 229 l~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~ 308 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNP 308 (484)
T ss_pred cccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhch
Confidence 47889999999999999999999999999999999753 034799999999999999998876
Q ss_pred Ccc
Q 026902 216 FKI 218 (231)
Q Consensus 216 ~~i 218 (231)
..-
T Consensus 309 e~~ 311 (484)
T KOG1855|consen 309 EQN 311 (484)
T ss_pred hhh
Confidence 543
No 172
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=97.39 E-value=0.00011 Score=57.11 Aligned_cols=57 Identities=21% Similarity=0.350 Sum_probs=48.5
Q ss_pred HhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026902 32 CLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAK 88 (231)
Q Consensus 32 ~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~ 88 (231)
++-.+||.|+++.+-. .....|-+||.|...++|.+|++.||+-++.|++|...+..
T Consensus 88 E~~~kygEiee~~Vc~Nl~~hl~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~p 146 (260)
T KOG2202|consen 88 ELEDKYGEIEELNVCDNLGDHLVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSP 146 (260)
T ss_pred HHHHHhhhhhhhhhhcccchhhhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecC
Confidence 3444799999986655 24578999999999999999999999999999999998863
No 173
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.35 E-value=0.00028 Score=63.59 Aligned_cols=78 Identities=18% Similarity=0.239 Sum_probs=70.4
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCC--eeeE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD--KPMR 83 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g--~~l~ 83 (231)
...++.+|+++|..-+....|. ..|..||+|..|.+ .....||+|+|.+...|+.|++.|-|..|+| +.++
T Consensus 452 st~ttr~~sgglg~w~p~~~l~----r~fd~fGpir~Idy---~hgq~yayi~yes~~~aq~a~~~~rgap~G~P~~r~r 524 (975)
T KOG0112|consen 452 STPTTRLQSGGLGPWSPVSRLN----REFDRFGPIRIIDY---RHGQPYAYIQYESPPAAQAATHDMRGAPLGGPPRRLR 524 (975)
T ss_pred cccceeeccCCCCCCChHHHHH----HHhhccCcceeeec---ccCCcceeeecccCccchhhHHHHhcCcCCCCCcccc
Confidence 4678999999999999999988 99999999999988 6678899999999999999999999999986 7799
Q ss_pred EEeccCc
Q 026902 84 IQYAKSK 90 (231)
Q Consensus 84 v~~~~~~ 90 (231)
|.++.+.
T Consensus 525 vdla~~~ 531 (975)
T KOG0112|consen 525 VDLASPP 531 (975)
T ss_pred cccccCC
Confidence 9988654
No 174
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=97.28 E-value=0.0016 Score=46.73 Aligned_cols=74 Identities=19% Similarity=0.330 Sum_probs=51.8
Q ss_pred CCCCCCCEEEecCCC----C-CCCH----HHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCC
Q 026902 151 ETAAPNNILFIQNLP----H-ETTS----SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQ 221 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp----~-~~t~----~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~ 221 (231)
...|+..||.|.=+. . ..-. .+|.+.|..||.+.-+++..+ .-.|+|.+-..|.+|++ ++|.++.|
T Consensus 22 ~~GPpDaTVvVsv~~~~~~e~~~Fdd~l~~~ll~~~~~~GevvLvRfv~~---~mwVTF~dg~sALaals-~dg~~v~g- 96 (146)
T PF08952_consen 22 SQGPPDATVVVSVDSPSEDEDSSFDDNLMDELLQKFAQYGEVVLVRFVGD---TMWVTFRDGQSALAALS-LDGIQVNG- 96 (146)
T ss_dssp ----TT-EEEEEECS-SCCCCHS--HHHHHHHHHHHHCCS-ECEEEEETT---CEEEEESSCHHHHHHHH-GCCSEETT-
T ss_pred hcCCCCceEEEEecCCCccccCcCCHHHHHHHHHHHHhCCceEEEEEeCC---eEEEEECccHHHHHHHc-cCCcEECC-
Confidence 355667777775443 1 2223 366678899999888877664 48999999999999995 99999999
Q ss_pred CCeEEEec
Q 026902 222 NPMAITFA 229 (231)
Q Consensus 222 ~~l~V~~a 229 (231)
+.|+|.+.
T Consensus 97 ~~l~i~LK 104 (146)
T PF08952_consen 97 RTLKIRLK 104 (146)
T ss_dssp EEEEEEE-
T ss_pred EEEEEEeC
Confidence 99999875
No 175
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.28 E-value=0.0017 Score=41.76 Aligned_cols=56 Identities=20% Similarity=0.355 Sum_probs=42.1
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG 215 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng 215 (231)
.+..+| ..|..|...||.++|+.||.|.--.| +. ..|||...+.+.|..|+..+.-
T Consensus 9 dHVFhl-tFPkeWK~~DI~qlFspfG~I~VsWi--~d-TSAfV~l~~r~~~~~v~~~~~~ 64 (87)
T PF08675_consen 9 DHVFHL-TFPKEWKTSDIYQLFSPFGQIYVSWI--ND-TSAFVALHNRDQAKVVMNTLKK 64 (87)
T ss_dssp CCEEEE-E--TT--HHHHHHHCCCCCCEEEEEE--CT-TEEEEEECCCHHHHHHHHHHTT
T ss_pred ceEEEE-eCchHhhhhhHHHHhccCCcEEEEEE--cC-CcEEEEeecHHHHHHHHHHhcc
Confidence 344556 59999999999999999999876665 22 3699999999999999988853
No 176
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.25 E-value=0.00032 Score=58.25 Aligned_cols=65 Identities=28% Similarity=0.263 Sum_probs=56.1
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC---------CC-------ccceEEEEEcCHHHHHHHHH
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT---------PK-------LRGQAWVVFSEVTAASNAVR 70 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~---------~~-------~~g~afV~f~~~e~A~~a~~ 70 (231)
-++++|.+-|||.+-.-+-|. ++|+.+|.|..|++.+. .. .+-||+|+|...+.|.+|.+
T Consensus 229 l~srtivaenLP~Dh~~enl~----kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e 304 (484)
T KOG1855|consen 229 LPSRTIVAENLPLDHSYENLS----KIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARE 304 (484)
T ss_pred cccceEEEecCCcchHHHHHH----HHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHH
Confidence 589999999999998888888 99999999999999872 11 25699999999999999999
Q ss_pred HhCCc
Q 026902 71 QMQNF 75 (231)
Q Consensus 71 ~l~g~ 75 (231)
.|+..
T Consensus 305 ~~~~e 309 (484)
T KOG1855|consen 305 LLNPE 309 (484)
T ss_pred hhchh
Confidence 88653
No 177
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.18 E-value=0.00099 Score=52.78 Aligned_cols=58 Identities=21% Similarity=0.190 Sum_probs=49.1
Q ss_pred HHHHHHHhccCCCeeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 170 SSMLEMLFQQYPGFKEVRMIEAK------PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 170 ~~~l~~~f~~~g~v~~v~~~~~~------~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
++++...+++||.|..|.|.-.. .--.||+|+++++|.+|+-.|||..|+| +.++.-|
T Consensus 300 ede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGG-r~v~A~F 363 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGG-RVVSACF 363 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecc-eeeehee
Confidence 56777889999999998887642 2248999999999999999999999999 8887655
No 178
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=97.04 E-value=0.0021 Score=50.95 Aligned_cols=66 Identities=20% Similarity=0.258 Sum_probs=53.7
Q ss_pred HHHHHHHHHHhhccCCCeEEEEEecC----CCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026902 23 KEELKRSLYCLFSQYGRIFDVVALKT----PKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAK 88 (231)
Q Consensus 23 e~~l~~~l~~~f~~~g~v~~v~~~~~----~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~ 88 (231)
.+||.++.-+..++||.|.+|.+.-. ....---||+|...++|.+|+--|||..|+||.++..|..
T Consensus 296 d~elede~keEceKyg~V~~viifeip~~p~deavRiFveF~r~e~aiKA~VdlnGRyFGGr~v~A~Fyn 365 (378)
T KOG1996|consen 296 DEELEDETKEECEKYGKVGNVIIFEIPSQPEDEAVRIFVEFERVESAIKAVVDLNGRYFGGRVVSACFYN 365 (378)
T ss_pred cHHHHHHHHHHHHhhcceeeEEEEecCCCccchhheeeeeeccHHHHHHHHHhcCCceecceeeeheecc
Confidence 45666666699999999998876651 2234468999999999999999999999999999888753
No 179
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=96.94 E-value=0.0068 Score=43.12 Aligned_cols=76 Identities=13% Similarity=0.216 Sum_probs=56.0
Q ss_pred CCCCCCEEEecCCCCCCC-HH---HHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 152 TAAPNNILFIQNLPHETT-SS---MLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t-~~---~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
..++-.+|.|+=|..++. .+ .+...++.||+|.+|.+.- +..|.|.|.+..+|=+|+.+++. ...| .-+...
T Consensus 82 kepPMsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cG--rqsavVvF~d~~SAC~Av~Af~s-~~pg-tm~qCs 157 (166)
T PF15023_consen 82 KEPPMSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCG--RQSAVVVFKDITSACKAVSAFQS-RAPG-TMFQCS 157 (166)
T ss_pred CCCCceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecC--CceEEEEehhhHHHHHHHHhhcC-CCCC-ceEEee
Confidence 455667788876665543 34 4445678999999988743 35799999999999999999976 4555 777777
Q ss_pred eccC
Q 026902 228 FAKK 231 (231)
Q Consensus 228 ~a~~ 231 (231)
|-+|
T Consensus 158 Wqqr 161 (166)
T PF15023_consen 158 WQQR 161 (166)
T ss_pred cccc
Confidence 7654
No 180
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.87 E-value=0.004 Score=53.14 Aligned_cols=63 Identities=24% Similarity=0.377 Sum_probs=55.2
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhc-cCCCeEEEEEecC---CCccceEEEEEcCHHHHHHHHHH
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFS-QYGRIFDVVALKT---PKLRGQAWVVFSEVTAASNAVRQ 71 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~-~~g~v~~v~~~~~---~~~~g~afV~f~~~e~A~~a~~~ 71 (231)
..-+.+|||||+||..++-.+|. .+|+ -||.|..+-|-.+ +-++|-|=|+|.+...-.+||.+
T Consensus 366 ~lDprrTVFVGgvprpl~A~eLA----~imd~lyGgV~yaGIDtD~k~KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 366 PIDPRRTVFVGGLPRPLTAEELA----MIMEDLFGGVLYVGIDTDPKLKYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred ccCccceEEecCCCCcchHHHHH----HHHHHhcCceEEEEeccCcccCCCCCcceeeecccHHHHHHHhh
Confidence 34678999999999999999999 9998 5999988877664 56899999999999999999973
No 181
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.81 E-value=0.0086 Score=36.53 Aligned_cols=53 Identities=21% Similarity=0.353 Sum_probs=43.5
Q ss_pred CEEEecCCCCCCCHHHHHHHhccC----CCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHh
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQY----PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQAL 213 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~----g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~l 213 (231)
..|+|+|+. .++.+||..+|..| ++ ..|.-+.+. -|-|.|.+.+.|.+|+.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~-~~IEWIdDt--ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGP-FRIEWIDDT--SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCC-ceEEEecCC--cEEEEECCHHHHHHHHHcC
Confidence 459999997 68889999999988 54 456666665 4999999999999999765
No 182
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=96.70 E-value=0.018 Score=37.19 Aligned_cols=55 Identities=16% Similarity=0.315 Sum_probs=42.6
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhC
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQ 73 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~ 73 (231)
....||+ +|......||. ++|+.||.|.--.+ +-.-|||...+.+.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~----qlFspfG~I~VsWi-----~dTSAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIY----QLFSPFGQIYVSWI-----NDTSAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHH----HHCCCCCCEEEEEE-----CTTEEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHH----HHhccCCcEEEEEE-----cCCcEEEEeecHHHHHHHHHHhc
Confidence 3456666 99999999998 99999999975555 45679999999999999998775
No 183
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=96.48 E-value=0.0026 Score=51.72 Aligned_cols=71 Identities=14% Similarity=0.176 Sum_probs=55.3
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCC--CeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYG--RIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g--~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
-++|||||-+-+|.+||- +.....| .+.++++.- +|.++|||+|...+....++-|+.|-...+.|+.=.|
T Consensus 81 ~~~YvGNL~W~TTD~DL~----~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLL----KALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred EEEEecceeEEeccHHHH----HHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 368999999999999987 4444433 344444443 6999999999999999999999989888898864333
No 184
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=96.35 E-value=0.0089 Score=44.94 Aligned_cols=79 Identities=15% Similarity=0.224 Sum_probs=50.4
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhcc-CCCe---EEEEEec-----CCCccceEEEEEcCHHHHHHHHHHhCCcee
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQ-YGRI---FDVVALK-----TPKLRGQAWVVFSEVTAASNAVRQMQNFPF 77 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~-~g~v---~~v~~~~-----~~~~~g~afV~f~~~e~A~~a~~~l~g~~~ 77 (231)
.....|.|++||...|++++. +..+. ++.- ..+.-.. ....-.-|||.|.+.+++...++.++|..|
T Consensus 5 ~~~~KvVIR~LPP~LteeeF~----~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F 80 (176)
T PF03467_consen 5 KEGTKVVIRRLPPNLTEEEFW----EQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVF 80 (176)
T ss_dssp ----EEEEEEE-TTS-HHHHC----CCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEE
T ss_pred ccCceEEEeCCCCCCCHHHHH----HHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEE
Confidence 445689999999999999987 76665 5544 3333111 122445799999999999999999999888
Q ss_pred CCe-----eeEEEeccC
Q 026902 78 YDK-----PMRIQYAKS 89 (231)
Q Consensus 78 ~g~-----~l~v~~~~~ 89 (231)
.+. +-.|.+|.-
T Consensus 81 ~D~kg~~~~~~VE~Apy 97 (176)
T PF03467_consen 81 VDSKGNEYPAVVEFAPY 97 (176)
T ss_dssp E-TTS-EEEEEEEE-SS
T ss_pred ECCCCCCcceeEEEcch
Confidence 642 445666643
No 185
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.13 E-value=0.076 Score=36.59 Aligned_cols=77 Identities=9% Similarity=0.107 Sum_probs=55.8
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccC-CCeEEEEEecCCC-ccceEEEEEcCHHHHHHHHHHhCCceeCC---ee
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQY-GRIFDVVALKTPK-LRGQAWVVFSEVTAASNAVRQMQNFPFYD---KP 81 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~-g~v~~v~~~~~~~-~~g~afV~f~~~e~A~~a~~~l~g~~~~g---~~ 81 (231)
.....+.+...|.-++-++|. .+.+.+ ..|..+++++++. ++=.+.+.|.+.++|......+||..|.. ..
T Consensus 11 ~~~~~~~l~vp~~~~~~d~l~----~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE~ 86 (110)
T PF07576_consen 11 RRSTLCCLAVPPYMTPSDFLL----FFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNSLEPET 86 (110)
T ss_pred CCceEEEEEeCcccccHHHHH----HhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCCCCCce
Confidence 445556666667777777775 555554 3567788888654 67789999999999999999999988863 33
Q ss_pred eEEEec
Q 026902 82 MRIQYA 87 (231)
Q Consensus 82 l~v~~~ 87 (231)
++|-|.
T Consensus 87 ChvvfV 92 (110)
T PF07576_consen 87 CHVVFV 92 (110)
T ss_pred eEEEEE
Confidence 555443
No 186
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.13 E-value=0.01 Score=44.82 Aligned_cols=60 Identities=22% Similarity=0.234 Sum_probs=45.5
Q ss_pred CHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc--CCccCCCCCeEEEecc
Q 026902 169 TSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ--GFKITPQNPMAITFAK 230 (231)
Q Consensus 169 t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~ln--g~~i~~~~~l~V~~a~ 230 (231)
..+.|+++|..|+.+......+.= +-..|.|.+.+.|.+|...|+ +..+.+ ..+++-|++
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF-rRi~v~f~~~~~A~~~r~~l~~~~~~~~g-~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF-RRIRVVFESPESAQRARQLLHWDGTSFNG-KRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT-TEEEEE-SSTTHHHHHHHTST--TSEETT-EE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC-CEEEEEeCCHHHHHHHHHHhcccccccCC-CceEEEEcc
Confidence 457899999999998887777652 249999999999999999999 999999 999999874
No 187
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.11 E-value=0.0076 Score=49.79 Aligned_cols=67 Identities=16% Similarity=0.316 Sum_probs=54.4
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC--------CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 158 ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK--------PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 158 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~--------~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
.|.|-||.++.|.+.++.+|...|.|..+.|+++- .-+|||.|.+...+..|- +|-++.|=+ +.|.|
T Consensus 9 vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvd-raliv 83 (479)
T KOG4676|consen 9 VIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVD-RALIV 83 (479)
T ss_pred eeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeee-eeEEE
Confidence 79999999999999999999999999999998731 248999999988877665 566665555 55554
No 188
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=96.09 E-value=0.018 Score=43.55 Aligned_cols=60 Identities=25% Similarity=0.302 Sum_probs=44.2
Q ss_pred HHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhC--CceeCCeeeEEEecc
Q 026902 26 LKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQ--NFPFYDKPMRIQYAK 88 (231)
Q Consensus 26 l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~--g~~~~g~~l~v~~~~ 88 (231)
+++.|.++|..|+.+..+..+ ++-+-..|.|.+.+.|..|+..|+ +..+.|..+++.|+.
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L---~sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~ 69 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPL---KSFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQ 69 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEE---TTTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE---
T ss_pred hHHHHHHHHHhcCCceEEEEc---CCCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEcc
Confidence 334566999999988887664 345568999999999999999999 999999999999984
No 189
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.06 E-value=0.0046 Score=55.73 Aligned_cols=71 Identities=27% Similarity=0.364 Sum_probs=60.8
Q ss_pred EEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCC-CCCeEEEecc
Q 026902 159 LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITP-QNPMAITFAK 230 (231)
Q Consensus 159 l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~-~~~l~V~~a~ 230 (231)
.++.|.+...+-.-|.-++++||.|.+.+..++- ..|.|+|...+.|..|+.+|+|.+... |-+.+|.|||
T Consensus 301 ~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~-N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 301 QSLENNAVNLTSSSLATLCSDYGSVASAWTLRDL-NMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhcccccchHHHHHHHHHhhcchhhheecccc-cchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 4555666778888899999999999999998876 479999999999999999999987643 3789999986
No 190
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=96.02 E-value=0.12 Score=35.69 Aligned_cols=66 Identities=14% Similarity=0.255 Sum_probs=49.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCC-CeeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCCccCC
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYP-GFKEVRMIEAK---PGIAFVEFEDDVQSSMAMQALQGFKITP 220 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~v~~~~~~---~g~afV~f~~~~~A~~A~~~lng~~i~~ 220 (231)
....+.+-..|.-++.++|..+.+.+- .|..++++++. +..+.++|.+.++|..-....||..|+.
T Consensus 12 ~~~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pnrymVLikF~~~~~Ad~Fy~~fNGk~Fns 81 (110)
T PF07576_consen 12 RSTLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPNRYMVLIKFRDQESADEFYEEFNGKPFNS 81 (110)
T ss_pred CceEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCceEEEEEEECCHHHHHHHHHHhCCCccCC
Confidence 344455555555566777776666554 56778888874 4479999999999999999999998865
No 191
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.97 E-value=0.0097 Score=49.70 Aligned_cols=70 Identities=26% Similarity=0.345 Sum_probs=53.5
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCC-ccCCCCCeEEEec
Q 026902 158 ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGF-KITPQNPMAITFA 229 (231)
Q Consensus 158 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~-~i~~~~~l~V~~a 229 (231)
.+|++||.+..+.+||..+|...---.+-.++ -..||+||.+.+..-|.+|++.++|. +..| +++.|..+
T Consensus 3 klyignL~p~~~psdl~svfg~ak~~~~g~fl-~k~gyafvd~pdq~wa~kaie~~sgk~elqG-kr~e~~~s 73 (584)
T KOG2193|consen 3 KLYIGNLSPQVTPSDLESVFGDAKIPGSGQFL-VKSGYAFVDCPDQQWANKAIETLSGKVELQG-KRQEVEHS 73 (584)
T ss_pred cccccccCCCCChHHHHHHhccccCCCCccee-eecceeeccCCchhhhhhhHHhhchhhhhcC-ceeeccch
Confidence 58999999999999999999753111111111 14589999999999999999999996 5666 88887653
No 192
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.66 E-value=0.025 Score=48.94 Aligned_cols=70 Identities=17% Similarity=0.266 Sum_probs=55.9
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhcc--CCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCC--ceeCCeee
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQ--YGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQN--FPFYDKPM 82 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~--~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g--~~~~g~~l 82 (231)
..-+.|.++-||.++.+++++ .||.. +-++.+|.+- .+-+ =||+|++..+|++|..+|.. ..|.|++|
T Consensus 173 ~kRcIvilREIpettp~e~Vk----~lf~~encPk~iscefa---~N~n-WyITfesd~DAQqAykylreevk~fqgKpI 244 (684)
T KOG2591|consen 173 HKRCIVILREIPETTPIEVVK----ALFKGENCPKVISCEFA---HNDN-WYITFESDTDAQQAYKYLREEVKTFQGKPI 244 (684)
T ss_pred cceeEEEEeecCCCChHHHHH----HHhccCCCCCceeeeee---ecCc-eEEEeecchhHHHHHHHHHHHHHhhcCcch
Confidence 445778899999999999999 99975 7788888883 3333 59999999999999998865 46777766
Q ss_pred EE
Q 026902 83 RI 84 (231)
Q Consensus 83 ~v 84 (231)
..
T Consensus 245 mA 246 (684)
T KOG2591|consen 245 MA 246 (684)
T ss_pred hh
Confidence 44
No 193
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.62 E-value=0.018 Score=43.33 Aligned_cols=66 Identities=12% Similarity=0.087 Sum_probs=45.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhcc-CCCee---EEEEeeC-------CCcEEEEEecCHHHHHHHHHHhcCCccCC
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQ-YPGFK---EVRMIEA-------KPGIAFVEFEDDVQSSMAMQALQGFKITP 220 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~-~g~v~---~v~~~~~-------~~g~afV~f~~~~~A~~A~~~lng~~i~~ 220 (231)
....|.|++||+.+|++++.+.++. ++.-. ++.-..+ ..+-|||.|.+.++...-...++|+.|.+
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~~~SRaYi~F~~~~~~~~F~~~~~g~~F~D 82 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPPTYSRAYINFKNPEDLLEFRDRFDGHVFVD 82 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS--EEEEEEESSCHHHHHHHHHCTTEEEE-
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCCcceEEEEEeCCHHHHHHHHHhcCCcEEEC
Confidence 3457999999999999999998887 77662 2321121 13569999999999999999999987765
No 194
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=95.53 E-value=0.092 Score=32.05 Aligned_cols=54 Identities=22% Similarity=0.433 Sum_probs=39.1
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccC----CCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHh
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQY----GRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQM 72 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~----g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l 72 (231)
...|+|+++.. ++.+||+ .+|..| ++.. |.-+ .-.-|=|.|.+.+.|.+|+.+|
T Consensus 5 peavhirGvd~-lsT~dI~----~y~~~y~~~~~~~~-IEWI----dDtScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 5 PEAVHIRGVDE-LSTDDIK----AYFSEYFDEEGPFR-IEWI----DDTSCNVVFKDEETAARALVAL 62 (62)
T ss_pred eceEEEEcCCC-CCHHHHH----HHHHHhcccCCCce-EEEe----cCCcEEEEECCHHHHHHHHHcC
Confidence 35789999976 7788888 777766 5443 3332 2335779999999999999754
No 195
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=95.35 E-value=0.019 Score=46.84 Aligned_cols=76 Identities=21% Similarity=0.298 Sum_probs=58.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCC--eeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPG--FKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~--v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
....-.+||+||-+-+|++||.+.+...|- +.+++++.+ ++|||.|..-......+.+..|-.+.|+|+.+.-
T Consensus 77 ~Grk~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V 156 (498)
T KOG4849|consen 77 EGRKYCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENRTNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTV 156 (498)
T ss_pred cCceEEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcccCCcccceEEEEecchHHHHHHHHhcccceecCCCCee
Confidence 334456899999999999999999887663 444555543 4799999999888888899999999999955554
Q ss_pred EEe
Q 026902 226 ITF 228 (231)
Q Consensus 226 V~~ 228 (231)
..+
T Consensus 157 ~~~ 159 (498)
T KOG4849|consen 157 LSY 159 (498)
T ss_pred ecc
Confidence 443
No 196
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.34 E-value=0.023 Score=44.38 Aligned_cols=74 Identities=22% Similarity=0.279 Sum_probs=59.8
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCC----ceeCCeeeE
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQN----FPFYDKPMR 83 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g----~~~~g~~l~ 83 (231)
..|||.||+..++.+.+. +-|+.||+|..-++.. .++..+-++|.|...-.|.+|....+. ....+++.-
T Consensus 32 a~l~V~nl~~~~sndll~----~~f~~fg~~e~av~~vD~r~k~t~eg~v~~~~k~~a~~a~rr~~~~g~~~~~~~~p~~ 107 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLE----QAFRRFGPIERAVAKVDDRGKPTREGIVEFAKKPNARKAARRCREGGFGGTTGGRPVG 107 (275)
T ss_pred ceEEEEecchhhhhHHHH----HhhhhcCccchheeeecccccccccchhhhhcchhHHHHHHHhccCccccCCCCCccC
Confidence 689999999999999998 9999999998765554 477889999999999999999987743 333456655
Q ss_pred EEec
Q 026902 84 IQYA 87 (231)
Q Consensus 84 v~~~ 87 (231)
|.+.
T Consensus 108 VeP~ 111 (275)
T KOG0115|consen 108 VEPM 111 (275)
T ss_pred CChh
Confidence 5543
No 197
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=95.19 E-value=0.11 Score=45.14 Aligned_cols=59 Identities=19% Similarity=0.405 Sum_probs=49.8
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhc--cCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQ--QYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG 215 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~--~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng 215 (231)
..+.++|+.||..+..++++-+|. .+..+.+|.+-.+.. =||+|++..||+.|...|.-
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~n--WyITfesd~DAQqAykylre 234 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHNDN--WYITFESDTDAQQAYKYLRE 234 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecCc--eEEEeecchhHHHHHHHHHH
Confidence 446688899999999999999997 478899999977662 69999999999999776643
No 198
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=95.02 E-value=0.093 Score=44.40 Aligned_cols=65 Identities=15% Similarity=0.319 Sum_probs=57.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCC-CeeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCCccCC
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYP-GFKEVRMIEAK---PGIAFVEFEDDVQSSMAMQALQGFKITP 220 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~v~~~~~~---~g~afV~f~~~~~A~~A~~~lng~~i~~ 220 (231)
+..|+|-.+|..++-.||..++..+- .|..+++++++ +-.+.|.|.+.++|..-.+.+||..|+.
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 78899999999999999999998664 57889999974 4569999999999999999999998865
No 199
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=94.95 E-value=0.045 Score=35.98 Aligned_cols=27 Identities=7% Similarity=0.242 Sum_probs=22.6
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhc
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQ 178 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~ 178 (231)
...+.++|.|.|||....+++|++.++
T Consensus 48 ~~vs~rtVlvsgip~~l~ee~l~D~Le 74 (88)
T PF07292_consen 48 SGVSKRTVLVSGIPDVLDEEELRDKLE 74 (88)
T ss_pred EcccCCEEEEeCCCCCCChhhheeeEE
Confidence 445778899999999999999998643
No 200
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.73 E-value=0.013 Score=47.58 Aligned_cols=73 Identities=12% Similarity=0.343 Sum_probs=57.9
Q ss_pred CCEEEecCCCCCCCHHHHH---HHhccCCCeeEEEEeeCC--------CcEEEEEecCHHHHHHHHHHhcCCccCCCCCe
Q 026902 156 NNILFIQNLPHETTSSMLE---MLFQQYPGFKEVRMIEAK--------PGIAFVEFEDDVQSSMAMQALQGFKITPQNPM 224 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~---~~f~~~g~v~~v~~~~~~--------~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l 224 (231)
.+-+|+-+|+...-++++. ..|.+||.|..+.+..+. ..-++|+|...++|..||..-+|+..++ +.|
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg-~~l 155 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDG-RAL 155 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhh-hhh
Confidence 3557888888876655554 368899999999887743 1249999999999999999999999998 887
Q ss_pred EEEec
Q 026902 225 AITFA 229 (231)
Q Consensus 225 ~V~~a 229 (231)
+..++
T Consensus 156 ka~~g 160 (327)
T KOG2068|consen 156 KASLG 160 (327)
T ss_pred HHhhC
Confidence 76654
No 201
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.63 E-value=0.069 Score=42.83 Aligned_cols=65 Identities=11% Similarity=0.149 Sum_probs=50.0
Q ss_pred EEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 159 LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 159 l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
+.|-+.|+. .-.-|.++|++||.|.+.....+. .|-.|.|.+..+|++||+ -||+.|++..-|.|
T Consensus 200 VTVfGFppg-~~s~vL~~F~~cG~Vvkhv~~~ng-NwMhirYssr~~A~KALs-kng~ii~g~vmiGV 264 (350)
T KOG4285|consen 200 VTVFGFPPG-QVSIVLNLFSRCGEVVKHVTPSNG-NWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGV 264 (350)
T ss_pred EEEeccCcc-chhHHHHHHHhhCeeeeeecCCCC-ceEEEEecchhHHHHhhh-hcCeeeccceEEee
Confidence 556566654 345677899999999988877444 599999999999999997 57999988433444
No 202
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=94.60 E-value=0.19 Score=40.42 Aligned_cols=71 Identities=15% Similarity=0.148 Sum_probs=53.3
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCe-eeEEEec
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK-PMRIQYA 87 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~-~l~v~~~ 87 (231)
+.=|-|-++|..-..--| .+|++||.|..... +..-.+-+|.|.+.-+|++|+. .||..|.|- .|=|...
T Consensus 197 D~WVTVfGFppg~~s~vL-----~~F~~cG~Vvkhv~---~~ngNwMhirYssr~~A~KALs-kng~ii~g~vmiGVkpC 267 (350)
T KOG4285|consen 197 DTWVTVFGFPPGQVSIVL-----NLFSRCGEVVKHVT---PSNGNWMHIRYSSRTHAQKALS-KNGTIIDGDVMIGVKPC 267 (350)
T ss_pred cceEEEeccCccchhHHH-----HHHHhhCeeeeeec---CCCCceEEEEecchhHHHHhhh-hcCeeeccceEEeeeec
Confidence 455566677776554333 89999999987766 5667799999999999999999 799988874 3445444
Q ss_pred c
Q 026902 88 K 88 (231)
Q Consensus 88 ~ 88 (231)
.
T Consensus 268 t 268 (350)
T KOG4285|consen 268 T 268 (350)
T ss_pred C
Confidence 3
No 203
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=94.46 E-value=0.025 Score=47.92 Aligned_cols=74 Identities=14% Similarity=0.187 Sum_probs=58.6
Q ss_pred CEEEEeCCCCcc-CHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEecc
Q 026902 10 QTIYIKNLNEKI-KKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAK 88 (231)
Q Consensus 10 ~~v~v~nLp~~~-te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~ 88 (231)
+.+-+.-.|+.. +.++|. ..|.+||.|..|.+ +.+.--|.|+|.+..+|-+|.. .++-.|.+|.|+|.|.+
T Consensus 373 s~l~lek~~~glnt~a~ln----~hfA~fG~i~n~qv---~~~~~~a~vTF~t~aeag~a~~-s~~avlnnr~iKl~whn 444 (526)
T KOG2135|consen 373 SPLALEKSPFGLNTIADLN----PHFAQFGEIENIQV---DYSSLHAVVTFKTRAEAGEAYA-SHGAVLNNRFIKLFWHN 444 (526)
T ss_pred chhhhhccCCCCchHhhhh----hhhhhcCccccccc---cCchhhheeeeeccccccchhc-cccceecCceeEEEEec
Confidence 334444455553 346666 99999999999988 5557789999999999988887 79999999999999998
Q ss_pred Ccc
Q 026902 89 SKS 91 (231)
Q Consensus 89 ~~~ 91 (231)
+..
T Consensus 445 ps~ 447 (526)
T KOG2135|consen 445 PSP 447 (526)
T ss_pred CCc
Confidence 743
No 204
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.34 E-value=0.019 Score=46.66 Aligned_cols=81 Identities=19% Similarity=0.327 Sum_probs=60.4
Q ss_pred CEEEEeCCCCcc-CHHHHHHHHHHhhccCCCeEEEEEecCC------CccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 10 QTIYIKNLNEKI-KKEELKRSLYCLFSQYGRIFDVVALKTP------KLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 10 ~~v~v~nLp~~~-te~~l~~~l~~~f~~~g~v~~v~~~~~~------~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
+-+||-+|+... ++..|+ =.+.|.+||.|..|.+.++. ....-++|+|...++|..|++..+|....|+.+
T Consensus 78 nlvyvvgl~~~~ade~~l~--~~eyfgqygki~ki~~~~~~S~~s~~~~~~s~yITy~~~eda~rci~~v~g~~~dg~~l 155 (327)
T KOG2068|consen 78 NLVYVVGLPLDLADESVLE--RTEYFGQYGKINKIVKNKDPSSSSSSGGTCSVYITYEEEEDADRCIDDVDGFVDDGRAL 155 (327)
T ss_pred hhhhhhCCCccccchhhhh--CcccccccccceEEeecCCcccccCCCCCCcccccccchHhhhhHHHHhhhHHhhhhhh
Confidence 456777888764 444443 22578889999998876622 112248999999999999999999999999998
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+..+...+..
T Consensus 156 ka~~gttkyc 165 (327)
T KOG2068|consen 156 KASLGTTKYC 165 (327)
T ss_pred HHhhCCCcch
Confidence 8888765533
No 205
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=93.95 E-value=0.33 Score=30.09 Aligned_cols=55 Identities=18% Similarity=0.298 Sum_probs=43.4
Q ss_pred ccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 20 ~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
.++-.+++ ..+..|+ ...|+.-++| -||.|.+.++|+++....+|..+.+..+.+
T Consensus 11 ~~~v~d~K----~~Lr~y~-~~~I~~d~tG-----fYIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFK----KRLRKYR-WDRIRDDRTG-----FYIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred CccHHHHH----HHHhcCC-cceEEecCCE-----EEEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 46778888 8888885 4456664344 689999999999999999999888776654
No 206
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=93.79 E-value=0.034 Score=47.20 Aligned_cols=73 Identities=16% Similarity=0.210 Sum_probs=58.2
Q ss_pred CCCCEEEecCCCCC-CCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 154 APNNILFIQNLPHE-TTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 154 ~~~~~l~v~nlp~~-~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
...+.|-+.-.|.. -+..+|..+|.+||.|..|.+-... -.|.|+|.+..+|-.|. ..++..|++ +.|+|-|-
T Consensus 370 ~dhs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-~~a~vTF~t~aeag~a~-~s~~avlnn-r~iKl~wh 443 (526)
T KOG2135|consen 370 VDHSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-LHAVVTFKTRAEAGEAY-ASHGAVLNN-RFIKLFWH 443 (526)
T ss_pred cccchhhhhccCCCCchHhhhhhhhhhcCccccccccCch-hhheeeeeccccccchh-ccccceecC-ceeEEEEe
Confidence 34444555556665 3679999999999999999886653 46999999999997777 478999999 99999884
No 207
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=93.51 E-value=0.29 Score=41.54 Aligned_cols=71 Identities=11% Similarity=0.161 Sum_probs=58.5
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhcc-CCCeEEEEEecCCC-ccceEEEEEcCHHHHHHHHHHhCCceeCC
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQ-YGRIFDVVALKTPK-LRGQAWVVFSEVTAASNAVRQMQNFPFYD 79 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~-~g~v~~v~~~~~~~-~~g~afV~f~~~e~A~~a~~~l~g~~~~g 79 (231)
...+++.|.|--+|..++-.||- .+... ...|..++++++|- ++=...|.|.+.++|......+||..|..
T Consensus 70 ~~~~~~mLcilaVP~~mt~~Dll----~F~~~~~~~I~~irivRd~~pnrymvLIkFr~q~da~~Fy~efNGk~Fn~ 142 (493)
T KOG0804|consen 70 NASSSTMLCILAVPAYMTSHDLL----RFCASFIKQISDIRIVRDGMPNRYMVLIKFRDQADADTFYEEFNGKQFNS 142 (493)
T ss_pred cCCCCcEEEEEeccccccHHHHH----HHHHHHhhhhheeEEeecCCCceEEEEEEeccchhHHHHHHHcCCCcCCC
Confidence 34458999999999999999987 55544 45788899999644 56679999999999999999999988863
No 208
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.42 E-value=0.44 Score=30.20 Aligned_cols=66 Identities=23% Similarity=0.305 Sum_probs=37.8
Q ss_pred EEEecCCC--CCCCHHHHHHHhccCCCee-----EEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 158 ILFIQNLP--HETTSSMLEMLFQQYPGFK-----EVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 158 ~l~v~nlp--~~~t~~~l~~~f~~~g~v~-----~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
++|| |+. ..++.-+|..++...+.+. .+.+. ..|+||+-.. +.|..++..|++..+.+ ++++|+.|
T Consensus 2 rl~i-n~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~---~~~S~vev~~-~~a~~v~~~l~~~~~~g-k~v~ve~A 74 (74)
T PF03880_consen 2 RLFI-NVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIF---DNFSFVEVPE-EVAEKVLEALNGKKIKG-KKVRVERA 74 (74)
T ss_dssp EEEE-S-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE----SS-EEEEE-T-T-HHHHHHHHTT--SSS-----EEE-
T ss_pred EEEE-EcccccCCCHHHHHHHHHhccCCCHHhEEEEEEe---eeEEEEEECH-HHHHHHHHHhcCCCCCC-eeEEEEEC
Confidence 3555 444 3588899999988766553 34442 2478998864 47889999999999999 99999876
No 209
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=93.36 E-value=0.064 Score=47.40 Aligned_cols=72 Identities=15% Similarity=0.240 Sum_probs=60.8
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
..++.-+|||+|+...+..+-++ .+...+|-|.+++.. -|+|+.|..+..+..|+..++...+.|..+.+
T Consensus 36 ~~~~~~~vfv~~~~~~~s~~~~~----~il~~~g~v~s~kr~------~fgf~~f~~~~~~~ra~r~~t~~~~~~~kl~~ 105 (668)
T KOG2253|consen 36 PLPPRDTVFVGNISYLVSQEFWK----SILAKSGFVPSWKRD------KFGFCEFLKHIGDLRASRLLTELNIDDQKLIE 105 (668)
T ss_pred CCCCCceeEecchhhhhhHHHHH----HHHhhCCcchhhhhh------hhcccchhhHHHHHHHHHHhcccCCCcchhhc
Confidence 34678899999999999999998 999999988876442 29999999999999999988888888877655
Q ss_pred Ee
Q 026902 85 QY 86 (231)
Q Consensus 85 ~~ 86 (231)
..
T Consensus 106 ~~ 107 (668)
T KOG2253|consen 106 NV 107 (668)
T ss_pred cc
Confidence 43
No 210
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=93.15 E-value=3.9 Score=33.06 Aligned_cols=171 Identities=10% Similarity=0.159 Sum_probs=101.3
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCC----------CccceEEEEEcCHHHHHH----HHH
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTP----------KLRGQAWVVFSEVTAASN----AVR 70 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~----------~~~g~afV~f~~~e~A~~----a~~ 70 (231)
|..-+|.|...|+..+++--.+- .-|.+||+|++|.++.+. .......+-|-+.+.+-. .++
T Consensus 11 D~YrTRSLLfeNv~~sidLh~Fl----~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQ 86 (309)
T PF10567_consen 11 DEYRTRSLLFENVNNSIDLHSFL----TKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQ 86 (309)
T ss_pred ccceeHHHHHhhccccccHHHHH----HHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHH
Confidence 44668889999999888877766 899999999999998743 344678888988877664 334
Q ss_pred HhCC--ceeCCeeeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccC
Q 026902 71 QMQN--FPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNAN 148 (231)
Q Consensus 71 ~l~g--~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 148 (231)
.|.. ..+....|.+.|..-+......... ...+. +........ .
T Consensus 87 rLsEfK~~L~S~~L~lsFV~l~y~~~~~~~~--~~~~~----~~~~~~~L~----------------------------~ 132 (309)
T PF10567_consen 87 RLSEFKTKLKSESLTLSFVSLNYQKKTDPND--EEADF----SDYLVASLQ----------------------------Y 132 (309)
T ss_pred HHHHHHHhcCCcceeEEEEEEeccccccccc--cccch----hhHHhhhhh----------------------------h
Confidence 4443 3456677777775321111000000 00000 000000000 0
Q ss_pred CCCCCCCCCEEEecCCCCCCCHHHHHH----HhccCCC----eeEEEEeeC-------CCcEEEEEecCHHHHHHHHHHh
Q 026902 149 TQETAAPNNILFIQNLPHETTSSMLEM----LFQQYPG----FKEVRMIEA-------KPGIAFVEFEDDVQSSMAMQAL 213 (231)
Q Consensus 149 ~~~~~~~~~~l~v~nlp~~~t~~~l~~----~f~~~g~----v~~v~~~~~-------~~g~afV~f~~~~~A~~A~~~l 213 (231)
.-....+++.|+|. +...+..+|+.. ++..=+. ++++.++.. +..||.++|-+..-|...+..|
T Consensus 133 ~i~~~gATRSl~Ie-F~~~~~~~dl~~~kL~fL~~~~n~RYVlEsIDlVna~~~~~~Fp~~YaILtFlnIsMAiEV~dYl 211 (309)
T PF10567_consen 133 NIINRGATRSLAIE-FKDPVDKDDLIEKKLPFLKNSNNKRYVLESIDLVNADEPSKHFPKNYAILTFLNISMAIEVLDYL 211 (309)
T ss_pred eeecCCcceEEEEE-ecCccchhHHHHHhhhhhccCCCceEEEEEEEEeccCcccccCCcceEEEeehhHHhHHHHHHHH
Confidence 11233467778884 334444444432 3333342 566777763 2569999999999998888777
Q ss_pred c
Q 026902 214 Q 214 (231)
Q Consensus 214 n 214 (231)
.
T Consensus 212 k 212 (309)
T PF10567_consen 212 K 212 (309)
T ss_pred H
Confidence 6
No 211
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=92.97 E-value=0.085 Score=46.69 Aligned_cols=71 Identities=13% Similarity=0.212 Sum_probs=61.4
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
...++..++||+|+-..+..+-+..+...+|.|.++.... |||+.|..+.-+..|+..++-..+++ ..+.+
T Consensus 35 ~~~~~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~----fgf~~f~~~~~~~ra~r~~t~~~~~~-~kl~~ 105 (668)
T KOG2253|consen 35 QPLPPRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK----FGFCEFLKHIGDLRASRLLTELNIDD-QKLIE 105 (668)
T ss_pred cCCCCCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh----hcccchhhHHHHHHHHHHhcccCCCc-chhhc
Confidence 3455677899999999999999999999999998876644 99999999999999999999999988 65544
No 212
>PF14111 DUF4283: Domain of unknown function (DUF4283)
Probab=92.92 E-value=0.26 Score=35.87 Aligned_cols=112 Identities=12% Similarity=-0.002 Sum_probs=78.2
Q ss_pred ccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEeccCccchhhhcCC
Q 026902 20 KIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDG 99 (231)
Q Consensus 20 ~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~ 99 (231)
..+-..|.+.|..++...|.+.-..+ ..++..++|.+.+++.+++. .....+.+..+.+....+......
T Consensus 28 ~~~~~~l~~~l~~~W~~~~~~~i~~l-----~~~~fl~~F~~~~d~~~vl~-~~p~~~~~~~~~l~~W~~~~~~~~---- 97 (153)
T PF14111_consen 28 PISLSALEQELAKIWKLKGGVKIRDL-----GDNLFLFQFESEEDRQRVLK-GGPWNFNGHFLILQRWSPDFNPSE---- 97 (153)
T ss_pred CCCHHHHHHHHHHHhCCCCcEEEEEe-----CCCeEEEEEEeccceeEEEe-cccccccccchhhhhhcccccccc----
Confidence 46788888777788887777665555 57899999999999999998 555667777777765432211000
Q ss_pred CcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCCC-CCHHHHHHHhc
Q 026902 100 SFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHE-TTSSMLEMLFQ 178 (231)
Q Consensus 100 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~-~t~~~l~~~f~ 178 (231)
..... ..-=|.|.|||.. .+++-+..+.+
T Consensus 98 -------------------------------------------------~~~~~-~~vWVri~glP~~~~~~~~~~~i~~ 127 (153)
T PF14111_consen 98 -------------------------------------------------VKFEH-IPVWVRIYGLPLHLWSEEILKAIGS 127 (153)
T ss_pred -------------------------------------------------cceec-cchhhhhccCCHHHhhhHHHHHHHH
Confidence 00000 1111566799987 78888999999
Q ss_pred cCCCeeEEEEeeC
Q 026902 179 QYPGFKEVRMIEA 191 (231)
Q Consensus 179 ~~g~v~~v~~~~~ 191 (231)
.+|.+..+...+.
T Consensus 128 ~iG~~i~vD~~t~ 140 (153)
T PF14111_consen 128 KIGEPIEVDENTL 140 (153)
T ss_pred hcCCeEEEEcCCC
Confidence 9999999888764
No 213
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=92.72 E-value=0.63 Score=28.82 Aligned_cols=55 Identities=15% Similarity=0.241 Sum_probs=43.9
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 167 ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 167 ~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
.++-+|++..+.+|+-. . +..++.| =||.|.+..+|.+|....||..+.. ..+.+
T Consensus 11 ~~~v~d~K~~Lr~y~~~-~--I~~d~tG-fYIvF~~~~Ea~rC~~~~~~~~~f~-y~m~M 65 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRWD-R--IRDDRTG-FYIVFNDSKEAERCFRAEDGTLFFT-YRMQM 65 (66)
T ss_pred CccHHHHHHHHhcCCcc-e--EEecCCE-EEEEECChHHHHHHHHhcCCCEEEE-EEEEe
Confidence 57889999999998853 2 3346666 5899999999999999999988876 55543
No 214
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=89.24 E-value=1.5 Score=35.18 Aligned_cols=52 Identities=13% Similarity=0.135 Sum_probs=39.4
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCH
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDD 203 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~ 203 (231)
..+...-|++.||+.+....||+..+.+.|.+---.-..+..|-||++|.|.
T Consensus 326 ~a~~~~di~~~nl~rd~rv~dlk~~lr~~~~~pm~iswkg~~~k~flh~~~~ 377 (396)
T KOG4410|consen 326 EAGAKTDIKLTNLSRDIRVKDLKSELRKRECTPMSISWKGHFGKCFLHFGNR 377 (396)
T ss_pred cCccccceeeccCccccchHHHHHHHHhcCCCceeEeeecCCcceeEecCCc
Confidence 4444556999999999999999999998776543333345567899999764
No 215
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.09 E-value=2 Score=37.82 Aligned_cols=68 Identities=15% Similarity=0.212 Sum_probs=57.3
Q ss_pred CCCCCEEEecCCCCC-CCHHHHHHHhccC----CCeeEEEEeeC--------------C---------------------
Q 026902 153 AAPNNILFIQNLPHE-TTSSMLEMLFQQY----PGFKEVRMIEA--------------K--------------------- 192 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~-~t~~~l~~~f~~~----g~v~~v~~~~~--------------~--------------------- 192 (231)
...+++|-|.||.+. +...||.-+|+.| |.|.+|.|.+. +
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 556788999999987 7899999988765 58899988751 1
Q ss_pred -----------------CcEEEEEecCHHHHHHHHHHhcCCccCC
Q 026902 193 -----------------PGIAFVEFEDDVQSSMAMQALQGFKITP 220 (231)
Q Consensus 193 -----------------~g~afV~f~~~~~A~~A~~~lng~~i~~ 220 (231)
-.||.|+|.++..|.+.....+|.+|..
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEs 295 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFES 295 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceecc
Confidence 1389999999999999999999999987
No 216
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=88.66 E-value=1.6 Score=27.67 Aligned_cols=57 Identities=12% Similarity=0.162 Sum_probs=32.1
Q ss_pred cCHHHHHHHHHHhhccCC-----CeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026902 21 IKKEELKRSLYCLFSQYG-----RIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYA 87 (231)
Q Consensus 21 ~te~~l~~~l~~~f~~~g-----~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~ 87 (231)
++..+|. .++..-+ .|-.|.+ ...|+||+-+.. .|.+++..|++..+.|+++.|+.|
T Consensus 13 ~~~~~iv----~~i~~~~gi~~~~IG~I~I-----~~~~S~vev~~~-~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 13 LTPRDIV----GAICNEAGIPGRDIGRIDI-----FDNFSFVEVPEE-VAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp --HHHHH----HHHHTCTTB-GGGEEEEEE------SS-EEEEE-TT--HHHHHHHHTT--SSS----EEE-
T ss_pred CCHHHHH----HHHHhccCCCHHhEEEEEE-----eeeEEEEEECHH-HHHHHHHHhcCCCCCCeeEEEEEC
Confidence 5666666 4444432 4455666 567999999764 888899999999999999999764
No 217
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=87.28 E-value=0.46 Score=43.54 Aligned_cols=75 Identities=25% Similarity=0.299 Sum_probs=59.3
Q ss_pred EEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeC--CeeeEEEecc
Q 026902 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFY--DKPMRIQYAK 88 (231)
Q Consensus 11 ~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~--g~~l~v~~~~ 88 (231)
..++-|.+-..+..-|. -+++.||.|.+.+..+ .-..|.|.|.+.+.|..|..+++|.... |-+.+|.+++
T Consensus 300 ~~~~~nn~v~~tSssL~----~l~s~yg~v~s~wtlr---~~N~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~~ak 372 (1007)
T KOG4574|consen 300 KQSLENNAVNLTSSSLA----TLCSDYGSVASAWTLR---DLNMALVSFSSVESAILALDALQGKEVSVTGAPSRVSFAK 372 (1007)
T ss_pred hhhhhcccccchHHHHH----HHHHhhcchhhheecc---cccchhhhhHHHHHHHHhhhhhcCCcccccCCceeEEecc
Confidence 34455566667777777 8999999999988754 3567999999999999999999997654 7788888886
Q ss_pred Cccc
Q 026902 89 SKSD 92 (231)
Q Consensus 89 ~~~~ 92 (231)
.-..
T Consensus 373 ~~~~ 376 (1007)
T KOG4574|consen 373 TLPM 376 (1007)
T ss_pred cccc
Confidence 5444
No 218
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.71 E-value=0.4 Score=38.18 Aligned_cols=62 Identities=24% Similarity=0.475 Sum_probs=43.7
Q ss_pred CEEEecCCCCC------------CCHHHHHHHhccCCCeeEEEEeeC---------C------CcE---------EEEEe
Q 026902 157 NILFIQNLPHE------------TTSSMLEMLFQQYPGFKEVRMIEA---------K------PGI---------AFVEF 200 (231)
Q Consensus 157 ~~l~v~nlp~~------------~t~~~l~~~f~~~g~v~~v~~~~~---------~------~g~---------afV~f 200 (231)
.|||+.+||.. .+++-|+..|+.||.|..|.++.- + +|| |||+|
T Consensus 150 dti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffeayvqf 229 (445)
T KOG2891|consen 150 DTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFEAYVQF 229 (445)
T ss_pred CceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHHHHHHH
Confidence 56888888864 457889999999999999988641 1 232 44555
Q ss_pred cCHHHHHHHHHHhcCCcc
Q 026902 201 EDDVQSSMAMQALQGFKI 218 (231)
Q Consensus 201 ~~~~~A~~A~~~lng~~i 218 (231)
...-....|+.+|-|..+
T Consensus 230 meykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 230 MEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHhHHHHHHHHhcchH
Confidence 555555667777777544
No 219
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=83.49 E-value=2.5 Score=33.96 Aligned_cols=51 Identities=18% Similarity=0.199 Sum_probs=35.2
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHH
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA 64 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~ 64 (231)
..+-|+++|||.++--.||+.+|++.=+ + -+.+...| ..|-||++|.+...
T Consensus 329 ~~~di~~~nl~rd~rv~dlk~~lr~~~~----~-pm~iswkg-~~~k~flh~~~~~~ 379 (396)
T KOG4410|consen 329 AKTDIKLTNLSRDIRVKDLKSELRKREC----T-PMSISWKG-HFGKCFLHFGNRKG 379 (396)
T ss_pred cccceeeccCccccchHHHHHHHHhcCC----C-ceeEeeec-CCcceeEecCCccC
Confidence 3567999999999999999955544322 1 13333334 68889999976543
No 220
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.68 E-value=18 Score=32.16 Aligned_cols=85 Identities=13% Similarity=0.176 Sum_probs=61.6
Q ss_pred CCCCCEEEEeCCCCc-cCHHHHHHHHHHhhccCCCeEEEEEec-------------CCCc--------------------
Q 026902 6 IPPNQTIYIKNLNEK-IKKEELKRSLYCLFSQYGRIFDVVALK-------------TPKL-------------------- 51 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~-~te~~l~~~l~~~f~~~g~v~~v~~~~-------------~~~~-------------------- 51 (231)
...+++|-|-||.++ +.-.||--.|..+...-|.|.+|.|.. +|+.
T Consensus 171 ~~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~ 250 (650)
T KOG2318|consen 171 GEETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEE 250 (650)
T ss_pred ccccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhh
Confidence 356899999999987 778887622222222336888887764 2330
Q ss_pred --------c---------ceEEEEEcCHHHHHHHHHHhCCceeC--CeeeEEEeccCc
Q 026902 52 --------R---------GQAWVVFSEVTAASNAVRQMQNFPFY--DKPMRIQYAKSK 90 (231)
Q Consensus 52 --------~---------g~afV~f~~~e~A~~a~~~l~g~~~~--g~~l~v~~~~~~ 90 (231)
| =||.|+|.+.+.|.......+|..|. +..+.++|....
T Consensus 251 ~~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFIPDd 308 (650)
T KOG2318|consen 251 EDVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFIPDD 308 (650)
T ss_pred hhHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeecCCC
Confidence 0 18999999999999999999999887 567777776543
No 221
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=79.67 E-value=1.8 Score=32.35 Aligned_cols=71 Identities=15% Similarity=0.241 Sum_probs=51.1
Q ss_pred EEecCCCCCCC-----HHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 159 LFIQNLPHETT-----SSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 159 l~v~nlp~~~t-----~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
+.+.+++..+- .....++|.+|.+..-..+.+.- +..-|-|.+++.|.+|...++++.+.++..++.-||+
T Consensus 13 ~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf-rrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ 88 (193)
T KOG4019|consen 13 IIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF-RRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQ 88 (193)
T ss_pred eeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh-ceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEcc
Confidence 55666765432 23344567776666555555543 3688899999999999999999999994488887775
No 222
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=78.23 E-value=6.9 Score=31.69 Aligned_cols=75 Identities=12% Similarity=0.221 Sum_probs=55.2
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC------------CcEEEEEecCHHHHHH----HHHHhcC--
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK------------PGIAFVEFEDDVQSSM----AMQALQG-- 215 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~------------~g~afV~f~~~~~A~~----A~~~lng-- 215 (231)
-.++.|.+.|+..+++-.+....|-+||+|++|+++.+. .....+.|-+.+.+.. .++.|+-
T Consensus 13 YrTRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK 92 (309)
T PF10567_consen 13 YRTRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFK 92 (309)
T ss_pred ceeHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHH
Confidence 356679999999999999999999999999999999854 2357888888776553 2333333
Q ss_pred CccCCCCCeEEEec
Q 026902 216 FKITPQNPMAITFA 229 (231)
Q Consensus 216 ~~i~~~~~l~V~~a 229 (231)
..+.. ..|.+.|.
T Consensus 93 ~~L~S-~~L~lsFV 105 (309)
T PF10567_consen 93 TKLKS-ESLTLSFV 105 (309)
T ss_pred HhcCC-cceeEEEE
Confidence 35555 67777663
No 223
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=76.07 E-value=0.85 Score=36.38 Aligned_cols=65 Identities=23% Similarity=0.333 Sum_probs=43.3
Q ss_pred CCEEEEeCCCCcc------------CHHHHHHHHHHhhccCCCeEEEEEec--------CCCccce--------------
Q 026902 9 NQTIYIKNLNEKI------------KKEELKRSLYCLFSQYGRIFDVVALK--------TPKLRGQ-------------- 54 (231)
Q Consensus 9 ~~~v~v~nLp~~~------------te~~l~~~l~~~f~~~g~v~~v~~~~--------~~~~~g~-------------- 54 (231)
.-|||+.+||-.+ +++- |...|+.||.|..|.++. +|+..|.
T Consensus 149 pdti~la~ip~kwf~lkedg~~dlpse~r----lr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffe 224 (445)
T KOG2891|consen 149 PDTIHLAGIPCKWFALKEDGSEDLPSEDR----LRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFE 224 (445)
T ss_pred CCceeecCCcceeeeecccccccCChHHH----HHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHH
Confidence 3578888888542 2344 449999999999988775 3444332
Q ss_pred EEEEEcCHHHHHHHHHHhCCcee
Q 026902 55 AWVVFSEVTAASNAVRQMQNFPF 77 (231)
Q Consensus 55 afV~f~~~e~A~~a~~~l~g~~~ 77 (231)
|||+|..-..-..||.+|.|..+
T Consensus 225 ayvqfmeykgfa~amdalr~~k~ 247 (445)
T KOG2891|consen 225 AYVQFMEYKGFAQAMDALRGMKL 247 (445)
T ss_pred HHHHHHHHHhHHHHHHHHhcchH
Confidence 34556555556677777777554
No 224
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=73.81 E-value=9.6 Score=32.26 Aligned_cols=56 Identities=18% Similarity=0.199 Sum_probs=44.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEe-eCCCcEEEEEecCHHHHHHHHHH
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI-EAKPGIAFVEFEDDVQSSMAMQA 212 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~-~~~~g~afV~f~~~~~A~~A~~~ 212 (231)
-.+.|-|.|.|...-.+||...|+.|+.- .+.|. .+. ..||-.|+.+..|..|+..
T Consensus 390 lpHVlEIydfp~efkteDll~~f~~yq~k-gfdIkWvDd-thalaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 390 LPHVLEIYDFPDEFKTEDLLKAFETYQNK-GFDIKWVDD-THALAVFSSVNRAAEALTL 446 (528)
T ss_pred ccceeEeccCchhhccHHHHHHHHHhhcC-CceeEEeec-ceeEEeecchHHHHHHhhc
Confidence 45778899999999999999999999873 33332 233 3799999999999999964
No 225
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=73.20 E-value=8.8 Score=23.35 Aligned_cols=20 Identities=10% Similarity=0.132 Sum_probs=16.5
Q ss_pred HHHHHHhccCCCeeEEEEee
Q 026902 171 SMLEMLFQQYPGFKEVRMIE 190 (231)
Q Consensus 171 ~~l~~~f~~~g~v~~v~~~~ 190 (231)
.+|+++|+..|+|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 68999999999998776643
No 226
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=72.99 E-value=5.6 Score=27.66 Aligned_cols=56 Identities=21% Similarity=0.139 Sum_probs=28.2
Q ss_pred EEEEeCCCCcc---------CHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHH-HHHHHH
Q 026902 11 TIYIKNLNEKI---------KKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTA-ASNAVR 70 (231)
Q Consensus 11 ~v~v~nLp~~~---------te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~-A~~a~~ 70 (231)
++.|-|+|... +.++|+ +.|+.|.+++-..+....-+.|++.|.|...-. -..|+.
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~----~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~~ 75 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELL----DKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAMR 75 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHH----HHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHH----HHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHHH
Confidence 45566776544 456777 777778877533333345579999999965443 334554
No 227
>PF02829 3H: 3H domain; InterPro: IPR004173 The 3H domain is named after its three highly conserved histidine residues. The 3H domain appears to be a small molecule-binding domain, based on its occurrence with other domains []. Several proteins carrying this domain are transcriptional regulators from the biotin repressor family. The transcription regulator TM1602 from Thermotoga maritima is a DNA-binding protein thought to belong to a family of de novo NAD synthesis pathway regulators. TM1602 has an N-terminal DNA-binding domain and a C-terminal 3H regulatory domain. The N-terminal domain appears to bind to the NAD promoter region and repress the de novo NAD biosynthesis operon, while the C-terminal 3H domain may bind to nicotinamide, nicotinic acid, or other substrate/products []. The 3H domain has a 2-layer alpha/beta sandwich fold.; GO: 0005488 binding; PDB: 1J5Y_A.
Probab=68.02 E-value=23 Score=23.79 Aligned_cols=52 Identities=13% Similarity=0.194 Sum_probs=39.6
Q ss_pred HHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCC
Q 026902 23 KEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQN 74 (231)
Q Consensus 23 e~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g 74 (231)
.++++++|+-+-..-|.|.+|.+....-..=.|-+...+..++++.++.++.
T Consensus 7 ~~~~~~EL~~IVd~Gg~V~DV~veHp~YG~i~~~L~i~sr~Dv~~Fi~~l~~ 58 (98)
T PF02829_consen 7 PDEIEDELEIIVDNGGRVLDVIVEHPVYGEITGNLNISSRRDVDKFIEKLEK 58 (98)
T ss_dssp GGGHHHHHHHHHHTT-EEEEEEEEETTTEEEEEEEEE-SHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCEEEEEEEeCCCCcEEEEEEecCCHHHHHHHHHHHhc
Confidence 4455566668888888999998877655577788999999999999997764
No 228
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=62.98 E-value=11 Score=28.37 Aligned_cols=79 Identities=19% Similarity=0.215 Sum_probs=53.3
Q ss_pred CCEEEEeCCCCc-cCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCe-eeEEEe
Q 026902 9 NQTIYIKNLNEK-IKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK-PMRIQY 86 (231)
Q Consensus 9 ~~~v~v~nLp~~-~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~-~l~v~~ 86 (231)
..++.+.+++.. .++.+.+..+.++|.+|-+..-..+ -++.+.--|.|.+++.|..|.-.+++..|.|. .+..-+
T Consensus 10 p~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~---lrsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yf 86 (193)
T KOG4019|consen 10 PTAIIACDIHEEVFVNREDKALFENLFRQINEDATFQL---LRSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYF 86 (193)
T ss_pred cceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHH---HHhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEE
Confidence 455677777765 3333333334467776655444444 23455666899999999999999999999988 777777
Q ss_pred ccCc
Q 026902 87 AKSK 90 (231)
Q Consensus 87 ~~~~ 90 (231)
+.+.
T Consensus 87 aQ~~ 90 (193)
T KOG4019|consen 87 AQPG 90 (193)
T ss_pred ccCC
Confidence 7543
No 229
>PF14893 PNMA: PNMA
Probab=62.60 E-value=8.4 Score=32.08 Aligned_cols=56 Identities=20% Similarity=0.312 Sum_probs=39.0
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEE-EEecCCCccceEEEEEcCH
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKTPKLRGQAWVVFSEV 62 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v-~~~~~~~~~g~afV~f~~~ 62 (231)
-+-+.|.|.+||.+|++++|+..|..-+...|...-. ++.+......-|+|+|...
T Consensus 16 ~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~ 72 (331)
T PF14893_consen 16 DPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAED 72 (331)
T ss_pred ChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeecccc
Confidence 3467889999999999999998888877777753311 1112223455788888743
No 230
>KOG0156 consensus Cytochrome P450 CYP2 subfamily [Secondary metabolites biosynthesis, transport and catabolism]
Probab=61.65 E-value=17 Score=32.20 Aligned_cols=62 Identities=29% Similarity=0.338 Sum_probs=48.0
Q ss_pred EEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 13 YIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 13 ~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
+||||+.-... ..-+.|.++-.+||+|..+++ |. .-.|.-.+.+.|++|+. -++..|.+|+.
T Consensus 36 iIGnl~~l~~~-~~h~~~~~ls~~yGpi~tl~l---G~---~~~Vviss~~~akE~l~-~~d~~fa~Rp~ 97 (489)
T KOG0156|consen 36 IIGNLHQLGSL-PPHRSFRKLSKKYGPVFTLRL---GS---VPVVVISSYEAAKEVLV-KQDLEFADRPD 97 (489)
T ss_pred ccccHHHcCCC-chhHHHHHHHHHhCCeEEEEe---cC---ceEEEECCHHHHHHHHH-hCCccccCCCC
Confidence 57888876555 344455577789999999888 43 24678889999999998 68999999986
No 231
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=60.92 E-value=2.6 Score=27.72 Aligned_cols=22 Identities=18% Similarity=0.472 Sum_probs=19.7
Q ss_pred CCCCEEEEeCCCCccCHHHHHH
Q 026902 7 PPNQTIYIKNLNEKIKKEELKR 28 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~ 28 (231)
.+.++|-|.|||...++++|+|
T Consensus 50 vs~rtVlvsgip~~l~ee~l~D 71 (88)
T PF07292_consen 50 VSKRTVLVSGIPDVLDEEELRD 71 (88)
T ss_pred ccCCEEEEeCCCCCCChhhhee
Confidence 5679999999999999999983
No 232
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=60.43 E-value=12 Score=30.94 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=27.4
Q ss_pred EEEEEcCHHHHHHHHHHhCCceeCCeeeEEEeccCccch
Q 026902 55 AWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDC 93 (231)
Q Consensus 55 afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~ 93 (231)
|||+|.+..+|..|.+.+.... ++.+++..|.++.+.
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~DI 37 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDDI 37 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCcccc
Confidence 7999999999999999655433 245577777665553
No 233
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=59.27 E-value=14 Score=25.64 Aligned_cols=53 Identities=26% Similarity=0.334 Sum_probs=26.7
Q ss_pred EEEecCCCCC---------CCHHHHHHHhccCCCeeEEEEeeC--CCcEEEEEecCHH-HHHHHH
Q 026902 158 ILFIQNLPHE---------TTSSMLEMLFQQYPGFKEVRMIEA--KPGIAFVEFEDDV-QSSMAM 210 (231)
Q Consensus 158 ~l~v~nlp~~---------~t~~~l~~~f~~~g~v~~v~~~~~--~~g~afV~f~~~~-~A~~A~ 210 (231)
+.+|-|++.. .+.+.|.+.|+.|.+++...+... .+|+++|.|..-- --..|+
T Consensus 10 mgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~kv~~l~~~~gh~g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 10 MGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLKVKPLYGKQGHTGFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp EEEEE----EE-TTS-EE---SHHHHHHHHH---SEEEEEEETTEEEEEEEEE--SSHHHHHHHH
T ss_pred EEEEEcCccccCCCCceeccCHHHHHHHHHhcCCceeEECcCCCCCcEEEEEEECCChHHHHHHH
Confidence 4666777543 456889999999999764444322 2579999997533 333444
No 234
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=58.63 E-value=46 Score=21.28 Aligned_cols=57 Identities=26% Similarity=0.314 Sum_probs=40.6
Q ss_pred EEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHH
Q 026902 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69 (231)
Q Consensus 11 ~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~ 69 (231)
.-|+-.++.+++..+|++.+..+|.- .|..|........--=|||++...+.|...=
T Consensus 15 n~y~F~V~~~anK~eIK~avE~lf~V--kV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va 71 (77)
T TIGR03636 15 NKLTFIVDRKATKGDIKRAVEKLFDV--KVEKVNTLITPRGEKKAYVKLAEEYAAEEIA 71 (77)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC--ceEEEEeEEcCCCceEEEEEECCCCcHHHHH
Confidence 45666789999999999666666542 5666655554445567999999888887643
No 235
>PF09707 Cas_Cas2CT1978: CRISPR-associated protein (Cas_Cas2CT1978); InterPro: IPR010152 Clustered Regularly Interspaced Short Palindromic Repeats (CRISPR) are a family of DNA direct repeats separated by regularly sized non-repetitive spacer sequences that are found in most bacterial and archaeal genomes []. CRISPRs appear to provide acquired resistance against bacteriophages, possibly acting with an RNA interference-like mechanism to inhibit gene functions of invasive DNA elements [, ]. Differences in the number and type of spacers between CRISPR repeats correlate with phage sensitivity. It is thought that following phage infection, bacteria integrate new spacers derived from phage genomic sequences, and that the removal or addition of particular spacers modifies the phage-resistance phenotype of the cell. Therefore, the specificity of CRISPRs may be determined by spacer-phage sequence similarity. In addition, there are many protein families known as CRISPR-associated sequences (Cas), which are encoded in the vicinity of CRISPR loci []. CRISPR/cas gene regions can be quite large, with up to 20 different, tandem-arranged cas genes next to a CRISPR cluster or filling the region between two repeat clusters. Cas genes and CRISPRs are found on mobile genetic elements such as plasmids, and have undergone extensive horizontal transfer. Cas proteins are thought to be involved in the propagation and functioning of CRISPRs. Some Cas proteins show similarity to helicases and repair proteins, although the functions of most are unknown. Cas families can be divided into subtypes according to operon organisation and phylogeny. This entry represents a minor branch of the Cas2 family of CRISPR-associated protein which are found in IPR003799 from INTERPRO. Cas2 is one of four protein families (Cas1 to Cas4) that are associated with CRISPR elements and always occur near a repeat cluster, usually in the order cas3-cas4-cas1-cas2. The function of Cas2 (and Cas1) is unknown. Cas3 proteins appear to be helicases while Cas4 proteins resemble RecB-type exonucleases, suggesting that these genes are involved in DNA metabolism or gene expression [].
Probab=57.41 E-value=23 Score=23.16 Aligned_cols=50 Identities=10% Similarity=0.202 Sum_probs=30.9
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcC
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~ 61 (231)
...-|||||++..+-+.-.. .+.+..+.=.-+-+..+.+..||+|-+..+
T Consensus 24 i~~GVyVg~~s~rVRe~lW~----~v~~~~~~G~a~m~~~~~neqG~~~~t~G~ 73 (86)
T PF09707_consen 24 IRPGVYVGNVSARVRERLWE----RVTEWIGDGSAVMVWSDNNEQGFDFRTLGD 73 (86)
T ss_pred cCCCcEEcCCCHHHHHHHHH----HHHhhCCCccEEEEEccCCCCCEEEEEeCC
Confidence 35679999999887665443 333333333333333456689999988843
No 236
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=56.96 E-value=15 Score=30.92 Aligned_cols=69 Identities=14% Similarity=0.239 Sum_probs=47.2
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCC-CeEEEEEec-----CCCccceEEEEEcCHHHHHHHHHHhCCceeCC
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYG-RIFDVVALK-----TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD 79 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g-~v~~v~~~~-----~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g 79 (231)
..-..|.|.+||...++.++. +-...|- .+....+.. ...-.+.|||.|...++.......++|..|.+
T Consensus 5 ~~~~Kvv~rrlpp~l~~~~~~----eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~ifld 79 (376)
T KOG1295|consen 5 EAKVKVVVRRLPPKLTEEQLL----EQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIFLD 79 (376)
T ss_pred ccceeeeeecCCCcccHHHHh----hhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEEec
Confidence 344678899999999999987 4333331 111122221 12236789999999999999999899988753
No 237
>KOG3424 consensus 40S ribosomal protein S24 [Translation, ribosomal structure and biogenesis]
Probab=55.14 E-value=69 Score=22.30 Aligned_cols=47 Identities=19% Similarity=0.290 Sum_probs=31.1
Q ss_pred ccCHHHHHHHHHHhhccCCCeEEEEEec----CCCccceEEEEEcCHHHHHH
Q 026902 20 KIKKEELKRSLYCLFSQYGRIFDVVALK----TPKLRGQAWVVFSEVTAASN 67 (231)
Q Consensus 20 ~~te~~l~~~l~~~f~~~g~v~~v~~~~----~~~~~g~afV~f~~~e~A~~ 67 (231)
.++.+||+.-|.+++..-..+..+.=.+ .|++.|||.| |.+.+.|.+
T Consensus 34 ~vsK~EirEKla~mYkt~~d~V~vfgfrt~~GggkstgfalI-Ydsve~akk 84 (132)
T KOG3424|consen 34 NVSKTEIREKLAKMYKTTPDAVFVFGFRTHFGGGKSTGFALI-YDSVEYAKK 84 (132)
T ss_pred CCCHHHHHHHHHHHhcCCcceEEEEEeeeccCCcccceeeee-eehHHHHHh
Confidence 4788999987778877643333332222 5889999987 456666654
No 238
>KOG4213 consensus RNA-binding protein La [RNA processing and modification]
Probab=50.65 E-value=23 Score=26.64 Aligned_cols=37 Identities=19% Similarity=0.147 Sum_probs=29.7
Q ss_pred HhhccCCCeEEEEEecC--C--CccceEEEEEcCHHHHHHHHH
Q 026902 32 CLFSQYGRIFDVVALKT--P--KLRGQAWVVFSEVTAASNAVR 70 (231)
Q Consensus 32 ~~f~~~g~v~~v~~~~~--~--~~~g~afV~f~~~e~A~~a~~ 70 (231)
++-+ |.+..|.+.+. + ..+|--||+|.+.+.|..+++
T Consensus 128 qw~~--~k~~nv~mr~~~~k~~~fkGsvkv~f~tk~qa~a~~~ 168 (205)
T KOG4213|consen 128 QWAS--GKGHNVKMRRHGNKAHPFKGSVKVTFQTKEQAFANDD 168 (205)
T ss_pred HHhc--ccceEeeccccCCCCCCCCCceEEEeecHHHHHhhhh
Confidence 4444 88888888773 3 468999999999999998776
No 239
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=48.02 E-value=46 Score=28.41 Aligned_cols=61 Identities=21% Similarity=0.218 Sum_probs=44.2
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCcee
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPF 77 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~ 77 (231)
...|=|.++|.....+||- ..|+.|+.- .++|.. ...-.||-.|.+...|..|+. |...++
T Consensus 391 pHVlEIydfp~efkteDll----~~f~~yq~k-gfdIkW--vDdthalaVFss~~~AaeaLt-~kh~~l 451 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLL----KAFETYQNK-GFDIKW--VDDTHALAVFSSVNRAAEALT-LKHDWL 451 (528)
T ss_pred cceeEeccCchhhccHHHH----HHHHHhhcC-CceeEE--eecceeEEeecchHHHHHHhh-ccCceE
Confidence 5678888999998888887 899988632 233332 034579999999999999998 433333
No 240
>TIGR03636 L23_arch archaeal ribosomal protein L23. This model describes the archaeal ribosomal protein L23P and rigorously excludes the bacterial counterpart L23. In order to capture every known instance of archaeal L23P, the trusted cutoff is set lower than a few of the highest scoring eukaryotic cytosolic ribosomal counterparts.
Probab=47.35 E-value=74 Score=20.33 Aligned_cols=55 Identities=9% Similarity=0.164 Sum_probs=39.3
Q ss_pred EEecCCCCCCCHHHHHHHhcc-CC-CeeEEEEeeCC--CcEEEEEecCHHHHHHHHHHh
Q 026902 159 LFIQNLPHETTSSMLEMLFQQ-YP-GFKEVRMIEAK--PGIAFVEFEDDVQSSMAMQAL 213 (231)
Q Consensus 159 l~v~nlp~~~t~~~l~~~f~~-~g-~v~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l 213 (231)
-|+-.++...+..+|++.++. || .|.+|....-+ .--|||.+.....|...-..+
T Consensus 16 ~y~F~V~~~anK~eIK~avE~lf~VkV~~Vnt~~~~~~~KKA~VtL~~g~~a~~va~k~ 74 (77)
T TIGR03636 16 KLTFIVDRKATKGDIKRAVEKLFDVKVEKVNTLITPRGEKKAYVKLAEEYAAEEIASRL 74 (77)
T ss_pred EEEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCceEEEEEECCCCcHHHHHHhh
Confidence 455568999999999999886 44 45565555433 235999999888887765544
No 241
>PF03439 Spt5-NGN: Early transcription elongation factor of RNA pol II, NGN section; InterPro: IPR005100 Spt5p and prokaryotic NusG are shown to contain a novel 'NGN' domain. The combined NGN and KOW motif regions of Spt5 form the binding domain with Spt4 []. Spt5 complexes with Spt4 as a 1:1 heterodimer snf this Spt5-Spt4 complex regulates early transcription elongation by RNA polymerase II and has an imputed role in pre-mRNA processing via its physical association with mRNA capping enzymes. The Schizosaccharomyces pombe core Spt5-Spt4 complex is a heterodimer bearing a trypsin-resistant Spt4-binding domain within the Spt5 subunit []. ; PDB: 3H7H_B 3QQC_D 3P8B_B 2EXU_A.
Probab=47.24 E-value=36 Score=21.97 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=24.6
Q ss_pred CeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC
Q 026902 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG 215 (231)
Q Consensus 182 ~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng 215 (231)
.|.++..+.+-+||-||+=.+..+...|++.+-+
T Consensus 33 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~ 66 (84)
T PF03439_consen 33 NIYSIFAPDSLKGYIYVEAERESDVKEAIRGIRH 66 (84)
T ss_dssp ---EEEE-TTSTSEEEEEESSHHHHHHHHTT-TT
T ss_pred ceEEEEEeCCCceEEEEEeCCHHHHHHHHhcccc
Confidence 5677777777789999999999999999887654
No 242
>PRK11558 putative ssRNA endonuclease; Provisional
Probab=47.09 E-value=32 Score=23.10 Aligned_cols=50 Identities=20% Similarity=0.350 Sum_probs=30.1
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCH
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEV 62 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~ 62 (231)
..-||||+++..+-+.- .+++.+.... |.+ +-+..+....||+|-++.+.
T Consensus 27 ~~GVyVg~~S~rVRd~l-W~~v~~~~~~-G~a--vmv~~~~~eqG~~~~t~G~~ 76 (97)
T PRK11558 27 RAGVYVGDVSRRIREMI-WQQVTQLAEE-GNV--VMAWATNTESGFEFQTFGEN 76 (97)
T ss_pred CCCcEEcCCCHHHHHHH-HHHHHHhCCC-CcE--EEEEcCCCCCCcEEEecCCC
Confidence 45699999887765543 3333344422 433 22234566779999988754
No 243
>PRK15321 putative type III secretion system effector protein OrgC; Provisional
Probab=47.04 E-value=16 Score=24.34 Aligned_cols=43 Identities=28% Similarity=0.358 Sum_probs=33.4
Q ss_pred EeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHH
Q 026902 14 IKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAA 65 (231)
Q Consensus 14 v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A 65 (231)
|..||..++.+.+++.+|++...||.. .+..-|||.|...-..
T Consensus 26 l~~LP~la~S~~~KD~I~q~m~~F~dp---------~~G~pAF~s~~QQ~~m 68 (120)
T PRK15321 26 LLALPESASSETLKDSIYQEMNAFKDP---------NSGDSAFVSFEQQTAM 68 (120)
T ss_pred HHhCCcccCcHHHHHHHHHHHHHhCCC---------CCCCcccccHHHHHHH
Confidence 457899999999999999999999753 3445699999755443
No 244
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=45.80 E-value=62 Score=19.01 Aligned_cols=54 Identities=17% Similarity=0.259 Sum_probs=41.2
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCH----HHHHHHHHH
Q 026902 158 ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDD----VQSSMAMQA 212 (231)
Q Consensus 158 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~----~~A~~A~~~ 212 (231)
|+.|.||...--...+.+.+.....|.++.+-... +.+-|.|... ++...++..
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~-~~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET-KTVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT-TEEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC-CEEEEEEecCCCCHHHHHHHHHH
Confidence 46777888877788999999999999999887665 6799999754 444455554
No 245
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=44.32 E-value=19 Score=28.25 Aligned_cols=37 Identities=22% Similarity=0.302 Sum_probs=30.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEe
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI 189 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~ 189 (231)
....+++|+-|+|..++++-|..+.++.|-+..+.+.
T Consensus 37 ~~eKd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~y~ 73 (261)
T KOG4008|consen 37 SNEKDCLFLVNVPLLSTEEHLKRFVSQLGHVQELLYN 73 (261)
T ss_pred cccccceeeecccccccHHHHHHHHHHhhhhhheecc
Confidence 3456779999999999999999999999977665553
No 246
>PRK01178 rps24e 30S ribosomal protein S24e; Reviewed
Probab=42.47 E-value=1.1e+02 Score=20.72 Aligned_cols=48 Identities=17% Similarity=0.277 Sum_probs=30.2
Q ss_pred ccCHHHHHHHHHHhhccCCCeEEEEEec----CCCccceEEEEEcCHHHHHHH
Q 026902 20 KIKKEELKRSLYCLFSQYGRIFDVVALK----TPKLRGQAWVVFSEVTAASNA 68 (231)
Q Consensus 20 ~~te~~l~~~l~~~f~~~g~v~~v~~~~----~~~~~g~afV~f~~~e~A~~a 68 (231)
+.+..||+..|..++..-....-|.-++ .+.+.|||.| |.+.+.|++.
T Consensus 30 tpsr~eirekLa~~~~~~~~~vvv~~~~t~fG~g~s~G~a~I-Yds~e~~kk~ 81 (99)
T PRK01178 30 TPSRKDVRKKLAAMLNADKELVVVRKIKTEYGMGKSKGYAKV-YDDKERARKI 81 (99)
T ss_pred CCCHHHHHHHHHHHHCcCCCEEEEEccCccCCCceEEEEEEE-ECCHHHHHhh
Confidence 5678899987777777543333333333 3678888877 4566666543
No 247
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=41.78 E-value=4.6 Score=35.57 Aligned_cols=71 Identities=13% Similarity=0.236 Sum_probs=54.8
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..+.+|++|++...+-++|. .+...+.-+..+.+.. ..+.....+|+|..--.-..|+-+||+..+....+
T Consensus 230 ke~sll~rni~Pnis~aeIe----~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s~~~ 303 (648)
T KOG2295|consen 230 KECSLLVRNILPNISVAEIE----NLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRSNFL 303 (648)
T ss_pred HHHHHHHhccCCcccHHHHH----HHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhcccccccc
Confidence 35778999999999999999 9998876555554432 24456688999998888888998899877765443
No 248
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=41.74 E-value=84 Score=26.97 Aligned_cols=69 Identities=20% Similarity=0.248 Sum_probs=52.9
Q ss_pred CCCCCCEEEecCCCCC-CCHHHHHHHhccC----CCeeEEEEeeCC----------------------------------
Q 026902 152 TAAPNNILFIQNLPHE-TTSSMLEMLFQQY----PGFKEVRMIEAK---------------------------------- 192 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~----g~v~~v~~~~~~---------------------------------- 192 (231)
...+++.|-|-||.+. +...||..+|+.| |.+..|.|.+..
T Consensus 142 ~G~~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~d 221 (622)
T COG5638 142 EGNPTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDD 221 (622)
T ss_pred CCCcccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCc
Confidence 3556777888899986 7889999888765 567767775410
Q ss_pred ------------------------------------CcEEEEEecCHHHHHHHHHHhcCCccCC
Q 026902 193 ------------------------------------PGIAFVEFEDDVQSSMAMQALQGFKITP 220 (231)
Q Consensus 193 ------------------------------------~g~afV~f~~~~~A~~A~~~lng~~i~~ 220 (231)
-.||.|++.+...+.......+|..+..
T Consensus 222 n~~sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~ 285 (622)
T COG5638 222 NVFSDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYEN 285 (622)
T ss_pred cchhhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCcccccc
Confidence 1279999999999999999999987765
No 249
>PTZ00071 40S ribosomal protein S24; Provisional
Probab=40.64 E-value=1.3e+02 Score=21.41 Aligned_cols=47 Identities=17% Similarity=0.268 Sum_probs=29.6
Q ss_pred ccCHHHHHHHHHHhhc-cCCCeEEEEEec----CCCccceEEEEEcCHHHHHH
Q 026902 20 KIKKEELKRSLYCLFS-QYGRIFDVVALK----TPKLRGQAWVVFSEVTAASN 67 (231)
Q Consensus 20 ~~te~~l~~~l~~~f~-~~g~v~~v~~~~----~~~~~g~afV~f~~~e~A~~ 67 (231)
+.+..||+..|..++. .-....-|.-++ .|.+.|||.|. .+.+.|.+
T Consensus 35 TpSr~eirekLA~~~~v~d~~~Vvv~~~~T~fG~g~StG~a~IY-ds~e~~kk 86 (132)
T PTZ00071 35 TVSKKDIKEKLAKQYKVADARTIVLFGFKTKFGGGKTTGFGLIY-DNLAALKK 86 (132)
T ss_pred CCCHHHHHHHHHHHhCCCCCCEEEEEccEecCCCceEEEEEEEE-CCHHHHHh
Confidence 5778999977777777 443433333333 37788888875 45555553
No 250
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=40.57 E-value=6.2 Score=33.77 Aligned_cols=70 Identities=4% Similarity=-0.118 Sum_probs=52.4
Q ss_pred EEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC---C--CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 159 LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA---K--PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 159 l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~---~--~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.++..+|...+++++...|..||-|..+.+.+. + .-++|++-. .++|+.|++-+--...++ ..++|.+|.
T Consensus 6 ~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~-~~~~~~~i~~~k~q~~~~-~~~r~~~~~ 80 (572)
T KOG4365|consen 6 KSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVNGSLGEVTPFQHAK-KANGPNYIQPQKRQTTFE-SQDRKAVSP 80 (572)
T ss_pred hhHhhcccccccchhhhhccCCcceeeccCCccccCCcceeeeeeeee-ccCcccccCHHHHhhhhh-hhhhhhcCc
Confidence 567889999999999999999999988877662 2 225777665 356778887776666666 667666653
No 251
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=39.69 E-value=8.3 Score=34.06 Aligned_cols=65 Identities=20% Similarity=0.330 Sum_probs=51.2
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCC
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITP 220 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~ 220 (231)
.++++++|+++..+-.+|..+++.+..+..+.+.... .-.+.|+|.--....-|+-+||+..+..
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~~r~lwv~fk~~~ni~~a~~aLn~irl~s 300 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNFERRLWVTFKRGTNIKEACWALNGIRLRS 300 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHHHHHhhHhhccccchHHHHHHhhhccccc
Confidence 4568999999999999999999998887777775541 1257889987777777888888876655
No 252
>PF11823 DUF3343: Protein of unknown function (DUF3343); InterPro: IPR021778 This family of proteins are functionally uncharacterised. This protein is found in bacteria and archaea. Proteins in this family are typically between 78 to 102 amino acids in length.
Probab=38.99 E-value=47 Score=20.66 Aligned_cols=30 Identities=10% Similarity=0.070 Sum_probs=23.9
Q ss_pred ceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 53 GQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 53 g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
.+.+|.|.+..+|.+|-+.|....+..+.+
T Consensus 2 ~~~~i~F~st~~a~~~ek~lk~~gi~~~li 31 (73)
T PF11823_consen 2 KYYLITFPSTHDAMKAEKLLKKNGIPVRLI 31 (73)
T ss_pred ceEEEEECCHHHHHHHHHHHHHCCCcEEEe
Confidence 478999999999999999887666654443
No 253
>PHA01632 hypothetical protein
Probab=38.96 E-value=20 Score=21.11 Aligned_cols=27 Identities=26% Similarity=0.476 Sum_probs=22.0
Q ss_pred EEeCCCCccCHHHHHHHHHHhhccCCC
Q 026902 13 YIKNLNEKIKKEELKRSLYCLFSQYGR 39 (231)
Q Consensus 13 ~v~nLp~~~te~~l~~~l~~~f~~~g~ 39 (231)
.|-.+|..-|+++|+..|-.++..|+.
T Consensus 20 lieqvp~kpteeelrkvlpkilkdyan 46 (64)
T PHA01632 20 LIEQVPQKPTEEELRKVLPKILKDYAN 46 (64)
T ss_pred ehhhcCCCCCHHHHHHHHHHHHHHHHH
Confidence 345899999999999888888877753
No 254
>COG0150 PurM Phosphoribosylaminoimidazole (AIR) synthetase [Nucleotide transport and metabolism]
Probab=37.95 E-value=13 Score=31.01 Aligned_cols=50 Identities=12% Similarity=0.111 Sum_probs=40.5
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeeC-CCcEEEEEecCHHHHHHHHHHhcCC
Q 026902 167 ETTSSMLEMLFQQYPGFKEVRMIEA-KPGIAFVEFEDDVQSSMAMQALQGF 216 (231)
Q Consensus 167 ~~t~~~l~~~f~~~g~v~~v~~~~~-~~g~afV~f~~~~~A~~A~~~lng~ 216 (231)
+|+...+.+++.+.|.|..-.+.+. +.|.+||-.-.++++.++++.|.+.
T Consensus 272 ~~~~p~iF~~i~~~G~v~~~EM~rtFNmGvG~v~iv~~e~~~~~~~~l~~~ 322 (345)
T COG0150 272 SWPPPPIFKWLQKAGNVEREEMYRTFNMGVGMVLIVPEEDAEKALALLKEQ 322 (345)
T ss_pred CCCCcHHHHHHHHhcCCCHHHHHHHhcCccceEEEEcHHHHHHHHHHHHhc
Confidence 3446788888999998876555554 5689999999999999999999875
No 255
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=36.22 E-value=7 Score=33.50 Aligned_cols=75 Identities=7% Similarity=-0.060 Sum_probs=53.1
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
+..-|+..+|...+++++. -+|..||-|..+.+.+ ++.....+||+-.. ..|..+++.+--+.+.|..+++.
T Consensus 3 s~~~~l~d~~~~~~~~~~~----~~~~d~~~i~~~d~~~~~~~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~~~r~~ 77 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNS----MKHEDPSIISMEDGSPYVNGSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFESQDRKA 77 (572)
T ss_pred chhhhHhhcccccccchhh----hhccCCcceeeccCCccccCCcceeeeeeeeec-cCcccccCHHHHhhhhhhhhhhh
Confidence 4556788899999999998 8999999888776655 56677789988754 34555555444455556666655
Q ss_pred ecc
Q 026902 86 YAK 88 (231)
Q Consensus 86 ~~~ 88 (231)
.++
T Consensus 78 ~~~ 80 (572)
T KOG4365|consen 78 VSP 80 (572)
T ss_pred cCc
Confidence 543
No 256
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=36.01 E-value=30 Score=30.57 Aligned_cols=69 Identities=17% Similarity=0.260 Sum_probs=45.3
Q ss_pred EecCCCCCCCHHHHHH-HhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 160 FIQNLPHETTSSMLEM-LFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 160 ~v~nlp~~~t~~~l~~-~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
.+.++|...-...+.. .+..++...+-.-.+....++++.|.++..+..|+..++|..+.+ ..++|..+
T Consensus 29 ~~e~~~~~~~q~~~~k~~~~~~~~~~s~tk~~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~-~~~~~~~~ 98 (534)
T KOG2187|consen 29 SIEMIPTFIGQKQLNKVLLKILRDVKSKTKLPKMPKYAYVTFETPSDAGKAINLVDGLLYKG-FILRVQLG 98 (534)
T ss_pred ceeccCchhhhhHHHhhhhhhcccccccCCCCCCCCceEEEEeccchhhhHHHHHhhhhhhc-chhhhhhc
Confidence 3444555544444443 334445444432233445799999999999999999999988887 77766554
No 257
>TIGR01873 cas_CT1978 CRISPR-associated endoribonuclease Cas2, E. coli subfamily. CRISPR is a term for Clustered, Regularly Interspaced Short Palidromic Repeats. A number of protein families appear only in association with these repeats and are designated Cas (CRISPR-Associated) proteins. This model represents a minor branch of the Cas2 family of CRISPR-associated endonuclease, whereas most Cas2 proteins are modeled instead by TIGR01573. This form of Cas2 is characteristic for the Ecoli subtype of CRISPR/Cas locus.
Probab=34.51 E-value=79 Score=20.76 Aligned_cols=50 Identities=12% Similarity=0.282 Sum_probs=30.4
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcC
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE 61 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~ 61 (231)
..-||||+++..+-+. |.+++.+.+..-|.+ +-+-.+.+..||+|-++.+
T Consensus 25 ~~GVyVg~~s~rVRe~-lW~~v~~~~~~~G~a--vm~~~~~~e~G~~~~t~G~ 74 (87)
T TIGR01873 25 RAGVYVGGVSASVRER-IWDYLAQHCPPKGSL--VITWSSNTCPGFEFFTLGE 74 (87)
T ss_pred CCCcEEcCCCHHHHHH-HHHHHHHhCCCCccE--EEEEeCCCCCCcEEEecCC
Confidence 4679999888876553 333344553222433 2233366788999988765
No 258
>PF15407 Spo7_2_N: Sporulation protein family 7
Probab=34.09 E-value=27 Score=21.68 Aligned_cols=19 Identities=5% Similarity=0.232 Sum_probs=14.8
Q ss_pred CCCCEEEEeCCCCccCHHH
Q 026902 7 PPNQTIYIKNLNEKIKKEE 25 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~ 25 (231)
..+++||||++|...-.+.
T Consensus 25 ~tSr~vflG~IP~~W~~~~ 43 (67)
T PF15407_consen 25 LTSRRVFLGPIPEIWLQDH 43 (67)
T ss_pred HcCceEEECCCChHHHHcC
Confidence 3589999999998765544
No 259
>PF14893 PNMA: PNMA
Probab=32.62 E-value=27 Score=29.19 Aligned_cols=53 Identities=23% Similarity=0.441 Sum_probs=33.1
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhcc-CCCeeEEEEee------CCCcEEEEEecCHH
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQ-YPGFKEVRMIE------AKPGIAFVEFEDDV 204 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~-~g~v~~v~~~~------~~~g~afV~f~~~~ 204 (231)
...+.+.|.|.+||.++++++|.+.+.. .-.+-..++.. .+...|+|+|....
T Consensus 14 ~~~~~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~aalve~~e~~ 73 (331)
T PF14893_consen 14 GVDPQRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAKAALVEFAEDV 73 (331)
T ss_pred CcChhhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccceeeeeccccc
Confidence 3446677999999999999999987653 22222222211 22346888886433
No 260
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=29.95 E-value=61 Score=27.44 Aligned_cols=62 Identities=16% Similarity=0.258 Sum_probs=44.6
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCC-eeEEEEeeC-------CCcEEEEEecCHHHHHHHHHHhcCCcc
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQYPG-FKEVRMIEA-------KPGIAFVEFEDDVQSSMAMQALQGFKI 218 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~g~-v~~v~~~~~-------~~g~afV~f~~~~~A~~A~~~lng~~i 218 (231)
..+.|++||+..+++++.+....+.. +....+.+. ..+.|+|.|.++++...-...++|+.|
T Consensus 8 ~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~~~ysrayinFk~~~dv~ef~~~f~g~if 77 (376)
T KOG1295|consen 8 VKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRNHKYSRAYINFKNPEDVEEFRRRFDGYIF 77 (376)
T ss_pred eeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchhhhhhhhhhccccHHHHHHHHhhCCceEE
Confidence 34778999999999999988777653 222333322 246799999999997777777777655
No 261
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=29.71 E-value=44 Score=26.36 Aligned_cols=33 Identities=21% Similarity=0.368 Sum_probs=27.1
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV 43 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v 43 (231)
....++|+-|+|..++++.|. .+.+.+|-+..+
T Consensus 38 ~eKd~lfl~Nvp~~~tee~lk----r~vsqlg~vq~~ 70 (261)
T KOG4008|consen 38 NEKDCLFLVNVPLLSTEEHLK----RFVSQLGHVQEL 70 (261)
T ss_pred ccccceeeecccccccHHHHH----HHHHHhhhhhhe
Confidence 456899999999999999999 777777755543
No 262
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=29.34 E-value=55 Score=29.04 Aligned_cols=42 Identities=21% Similarity=0.398 Sum_probs=35.0
Q ss_pred CCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEeccCc
Q 026902 49 PKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSK 90 (231)
Q Consensus 49 ~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~~~ 90 (231)
.....|+++.|.+++.+.+|+..++|..+.+..+++..+...
T Consensus 60 ~~~~~~~~~~~et~~~~~ka~~~v~g~~~k~~~~~~~~~~~~ 101 (534)
T KOG2187|consen 60 PKMPKYAYVTFETPSDAGKAINLVDGLLYKGFILRVQLGATE 101 (534)
T ss_pred CCCCCceEEEEeccchhhhHHHHHhhhhhhcchhhhhhcccc
Confidence 345689999999999999999999999988877777665444
No 263
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=28.92 E-value=1.7e+02 Score=19.05 Aligned_cols=58 Identities=24% Similarity=0.292 Sum_probs=41.8
Q ss_pred EEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHH
Q 026902 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70 (231)
Q Consensus 11 ~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~ 70 (231)
.-|+--.+..++..+|++.+..+|.- .|..|.........-=|||.+.....|...-.
T Consensus 22 n~y~F~V~~~anK~eIK~AvE~lf~V--kV~~VnT~~~~~~~KKA~V~L~~g~~A~~va~ 79 (84)
T PRK14548 22 NKLTFIVDRRATKPDIKRAVEELFDV--KVEKVNTLITPKGEKKAYVKLAEEYDAEEIAS 79 (84)
T ss_pred CEEEEEECCCCCHHHHHHHHHHHhCC--ceEEEEeEEcCCCcEEEEEEeCCCCcHHHHHH
Confidence 34555688999999999666566542 56777666545555679999999988887543
No 264
>PHA03008 hypothetical protein; Provisional
Probab=25.58 E-value=1.7e+02 Score=22.59 Aligned_cols=44 Identities=18% Similarity=0.470 Sum_probs=37.0
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCc
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPG 194 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g 194 (231)
.....+..++|+|+.+--...-|..+|.+|-.+..+.++++...
T Consensus 16 ~~~~~~d~~~~snit~~h~~n~i~~ff~~~d~~~~~ifvpg~~d 59 (234)
T PHA03008 16 KIDEICDIAFISNITHIHDHNIIKIFFDKFDDFDEIIFVPGDID 59 (234)
T ss_pred CCcccccEEEEecccccccccHHHHHHhhccccceEEEccCCcc
Confidence 34456778999999998889999999999999999999887643
No 265
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=24.53 E-value=1e+02 Score=24.76 Aligned_cols=30 Identities=23% Similarity=0.082 Sum_probs=21.9
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEE
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV 43 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v 43 (231)
....|+||||.++..-|. .++...-.+...
T Consensus 96 ~~~vVaNlPY~Isspii~----kll~~~~~~~~~ 125 (259)
T COG0030 96 PYKVVANLPYNISSPILF----KLLEEKFIIQDM 125 (259)
T ss_pred CCEEEEcCCCcccHHHHH----HHHhccCccceE
Confidence 456799999999998887 777765444333
No 266
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=24.07 E-value=62 Score=17.25 Aligned_cols=17 Identities=12% Similarity=-0.148 Sum_probs=14.6
Q ss_pred CCCHHHHHHHhccCCCe
Q 026902 167 ETTSSMLEMLFQQYPGF 183 (231)
Q Consensus 167 ~~t~~~l~~~f~~~g~v 183 (231)
.++.++|++.+..+|-.
T Consensus 3 tWs~~~L~~wL~~~gi~ 19 (38)
T PF10281_consen 3 TWSDSDLKSWLKSHGIP 19 (38)
T ss_pred CCCHHHHHHHHHHcCCC
Confidence 57899999999998864
No 267
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=23.65 E-value=99 Score=24.69 Aligned_cols=29 Identities=24% Similarity=0.424 Sum_probs=21.3
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhc--cCCCeE
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFS--QYGRIF 41 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~--~~g~v~ 41 (231)
...++|+|||+..+..-|. +++. .||.+.
T Consensus 97 ~~~~vv~NlPy~is~~il~----~ll~~~~~g~~~ 127 (262)
T PF00398_consen 97 QPLLVVGNLPYNISSPILR----KLLELYRFGRVR 127 (262)
T ss_dssp SEEEEEEEETGTGHHHHHH----HHHHHGGGCEEE
T ss_pred CceEEEEEecccchHHHHH----HHhhcccccccc
Confidence 5678999999999988887 5554 455433
No 268
>PF12829 Mhr1: Transcriptional regulation of mitochondrial recombination; InterPro: IPR024629 These proteins are involved in regulation of RNA polymerase II-dependent transcription. They are also involved in regulation of mitochondrial DNA recombination, maintenance, repair, and generation of homoplasmic cells [, , , ].
Probab=23.49 E-value=1.1e+02 Score=20.37 Aligned_cols=23 Identities=17% Similarity=0.244 Sum_probs=19.6
Q ss_pred ccceEEEEEcCHHHHHHHHHHhC
Q 026902 51 LRGQAWVVFSEVTAASNAVRQMQ 73 (231)
Q Consensus 51 ~~g~afV~f~~~e~A~~a~~~l~ 73 (231)
=+.+|-|+|++.+.+..|.+.|-
T Consensus 50 W~pm~vv~f~~~~~g~~~yq~Lr 72 (91)
T PF12829_consen 50 WRPMCVVNFPNYEVGVSAYQKLR 72 (91)
T ss_pred ceEeEEEECCChHHHHHHHHHHH
Confidence 46799999999999999988654
No 269
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate. Included in this CD is the C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate, found in Bacillus subtilis (BS) and other Firmicutes, Deinococci, and Bacteroidetes. PDH is the first enzyme in the aromatic amino acid pathway specific for the biosynthesis of tyrosine. This enzyme is feedback inhibited by tyrosine in B. subtilis and other microorganisms. Both phenylalanine and tryptophan have been shown to be inhibitors of this activity in B. subtilis. Bifunctional chorismate mutase-PDH (TyrA) enzymes such as those seen in Escherichia coli do not contain an ACT domain. Also included in this CD is the N-terminal ACT domain of a novel protein composed almost entirely of two tandem A
Probab=23.38 E-value=1.5e+02 Score=16.74 Aligned_cols=38 Identities=18% Similarity=0.239 Sum_probs=25.5
Q ss_pred HhhccCC-CeEEEEEecCCCccceEEEEEcCHHHHHHHH
Q 026902 32 CLFSQYG-RIFDVVALKTPKLRGQAWVVFSEVTAASNAV 69 (231)
Q Consensus 32 ~~f~~~g-~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~ 69 (231)
+.+.+.| .|..+....+....+..-+.+.+.+.|.+++
T Consensus 17 ~~l~~~~inI~~~~~~~~~~~~~~~~~~v~~~~~a~~~l 55 (56)
T cd04889 17 EILAEAGINIKAISIAETRGEFGILRLIFSDPERAKEVL 55 (56)
T ss_pred HHHHHcCCCEeeEEEEEccCCcEEEEEEECCHHHHHHHh
Confidence 5555544 7777766554446677778888888887765
No 270
>PRK08559 nusG transcription antitermination protein NusG; Validated
Probab=22.74 E-value=1.5e+02 Score=21.59 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=26.3
Q ss_pred eeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC
Q 026902 183 FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG 215 (231)
Q Consensus 183 v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng 215 (231)
|.++.++..-+||.||+....+++..++..+.|
T Consensus 36 i~~i~vp~~fpGYVfVe~~~~~~~~~~i~~v~~ 68 (153)
T PRK08559 36 IYAILAPPELKGYVLVEAESKGAVEEAIRGIPH 68 (153)
T ss_pred EEEEEccCCCCcEEEEEEEChHHHHHHHhcCCC
Confidence 566777666679999999988888888877654
No 271
>PF08544 GHMP_kinases_C: GHMP kinases C terminal ; InterPro: IPR013750 This domain is found in homoserine kinases (2.7.1.39 from EC), galactokinases (2.7.1.6 from EC) and mevalonate kinases (2.7.1.36 from EC). These kinases make up the GHMP kinase superfamily of ATP-dependent enzymes []. These enzymes are involved in the biosynthesis of isoprenes and amino acids as well as in carbohydrate metabolism. The C-terminal domain of homoserine kinase has a central alpha-beta plait fold and an insertion of four helices, which, together with the N-terminal fold, create a novel nucleotide binding fold [].; PDB: 2R3V_C 4EMD_A 4DXL_A 4ED4_A 2GS8_A 1K47_E 3GON_A 3K17_B 1PIE_A 2AJ4_A ....
Probab=20.76 E-value=2.2e+02 Score=17.60 Aligned_cols=44 Identities=14% Similarity=0.086 Sum_probs=30.7
Q ss_pred HHHHHHHhccCCCeeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhc
Q 026902 170 SSMLEMLFQQYPGFKEVRMIEAK-PGIAFVEFEDDVQSSMAMQALQ 214 (231)
Q Consensus 170 ~~~l~~~f~~~g~v~~v~~~~~~-~g~afV~f~~~~~A~~A~~~ln 214 (231)
-.++.+.+..+| +....+.-.. -++.|+-+.+.+.+..+...+.
T Consensus 36 i~~~~~~~~~~G-a~~~~~sGsG~G~~v~~l~~~~~~~~~v~~~l~ 80 (85)
T PF08544_consen 36 IDELKEAAEENG-ALGAKMSGSGGGPTVFALCKDEDDAERVAEALR 80 (85)
T ss_dssp HHHHHHHHHHTT-ESEEEEETTSSSSEEEEEESSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC-CCceecCCCCCCCeEEEEECCHHHHHHHHHHHH
Confidence 356777788888 4555554431 3578888889999888877763
Done!