Query 026902
Match_columns 231
No_of_seqs 114 out of 1850
Neff 9.9
Searched_HMMs 29240
Date Tue Mar 26 01:04:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026902.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026902hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3pgw_A U1-A; protein-RNA compl 100.0 4.1E-41 1.4E-45 271.5 25.9 230 1-231 1-282 (282)
2 4f02_A Polyadenylate-binding p 100.0 7.9E-38 2.7E-42 242.5 20.0 162 6-230 12-179 (213)
3 3md3_A Nuclear and cytoplasmic 100.0 4.4E-37 1.5E-41 228.7 19.5 159 10-231 1-166 (166)
4 1fxl_A Paraneoplastic encephal 100.0 3.1E-36 1.1E-40 224.4 21.4 157 8-229 1-167 (167)
5 1b7f_A Protein (SXL-lethal pro 100.0 4.1E-36 1.4E-40 224.1 21.3 158 8-229 2-168 (168)
6 2adc_A Polypyrimidine tract-bi 100.0 2.1E-35 7.1E-40 231.3 21.3 194 6-231 31-227 (229)
7 3nmr_A Cugbp ELAV-like family 100.0 1.8E-35 6.1E-40 221.9 19.1 160 8-230 2-175 (175)
8 1l3k_A Heterogeneous nuclear r 100.0 1.8E-35 6E-40 226.1 19.4 166 4-230 8-181 (196)
9 2qfj_A FBP-interacting repress 100.0 1.7E-35 5.9E-40 229.4 19.3 169 8-230 27-203 (216)
10 1qm9_A Polypyrimidine tract-bi 100.0 3.1E-35 1.1E-39 225.3 19.2 193 8-231 2-196 (198)
11 3tyt_A Heterogeneous nuclear r 100.0 5E-35 1.7E-39 225.0 19.9 191 7-229 2-204 (205)
12 2g4b_A Splicing factor U2AF 65 100.0 4.2E-35 1.4E-39 219.5 17.6 154 7-229 2-171 (172)
13 2yh0_A Splicing factor U2AF 65 100.0 1.6E-34 5.4E-39 221.1 18.0 175 7-230 2-192 (198)
14 2cjk_A Nuclear polyadenylated 100.0 6.9E-35 2.4E-39 217.3 14.3 156 7-230 1-164 (167)
15 1fje_B Nucleolin RBD12, protei 100.0 4.5E-35 1.5E-39 220.1 10.5 162 4-230 8-172 (175)
16 3smz_A Protein raver-1, ribonu 100.0 4.5E-33 1.5E-37 224.7 20.6 163 7-231 93-263 (284)
17 3sde_A Paraspeckle component 1 100.0 1.6E-32 5.4E-37 219.0 18.6 150 7-230 20-177 (261)
18 2ghp_A U4/U6 snRNA-associated 100.0 7.3E-33 2.5E-37 224.3 16.7 166 7-231 115-290 (292)
19 3smz_A Protein raver-1, ribonu 100.0 3E-32 1E-36 219.8 19.9 149 7-230 20-173 (284)
20 2ghp_A U4/U6 snRNA-associated 100.0 9.1E-32 3.1E-36 217.8 17.6 153 5-230 37-195 (292)
21 4f25_A Polyadenylate-binding p 99.9 4.5E-25 1.5E-29 154.3 10.7 82 7-92 3-85 (115)
22 2i2y_A Fusion protein consists 99.9 4.4E-24 1.5E-28 156.3 12.9 137 48-230 9-146 (150)
23 2kn4_A Immunoglobulin G-bindin 99.9 1.1E-23 3.7E-28 155.5 13.3 139 44-230 4-148 (158)
24 2a3j_A U1 small nuclear ribonu 99.9 4.7E-23 1.6E-27 145.9 11.2 94 3-96 23-116 (127)
25 4fxv_A ELAV-like protein 1; RN 99.9 2.2E-22 7.6E-27 136.7 11.2 79 7-89 17-98 (99)
26 1nu4_A U1A RNA binding domain; 99.9 4.6E-22 1.6E-26 134.7 9.5 91 3-93 2-92 (97)
27 3s8s_A Histone-lysine N-methyl 99.9 3E-21 1E-25 133.5 11.7 82 5-90 2-86 (110)
28 2dgx_A KIAA0430 protein; RRM d 99.9 3.9E-21 1.3E-25 129.9 11.7 90 3-92 3-92 (96)
29 3lqv_A PRE-mRNA branch site pr 99.9 1.3E-21 4.3E-26 136.7 8.9 82 5-90 4-85 (115)
30 2diu_A KIAA0430 protein; struc 99.9 4.6E-21 1.6E-25 125.9 10.3 84 4-94 3-88 (96)
31 2lxi_A RNA-binding protein 10; 99.9 6.7E-22 2.3E-26 132.2 6.2 80 9-92 1-85 (91)
32 3r27_A HnRNP L, heterogeneous 99.9 5.5E-21 1.9E-25 128.7 10.3 81 4-91 16-98 (100)
33 2lkz_A RNA-binding protein 5; 99.8 2.9E-21 1E-25 129.8 8.7 85 1-89 1-94 (95)
34 2e5h_A Zinc finger CCHC-type a 99.8 1.2E-20 4.2E-25 126.9 11.6 84 1-88 8-94 (94)
35 4fxv_A ELAV-like protein 1; RN 99.8 5.4E-21 1.8E-25 129.8 9.6 75 155-230 18-97 (99)
36 3r27_A HnRNP L, heterogeneous 99.8 1E-20 3.5E-25 127.4 9.9 78 152-231 17-96 (100)
37 1whw_A Hypothetical protein ri 99.8 2.1E-20 7.1E-25 127.0 11.5 86 4-93 3-91 (99)
38 2jrs_A RNA-binding protein 39; 99.8 1.3E-20 4.4E-25 130.0 10.6 84 4-91 21-107 (108)
39 3mdf_A Peptidyl-prolyl CIS-tra 99.8 1.9E-20 6.3E-25 123.6 10.7 80 5-88 3-85 (85)
40 2dgs_A DAZ-associated protein 99.8 3.5E-20 1.2E-24 125.9 12.2 86 3-93 4-92 (99)
41 2x1f_A MRNA 3'-END-processing 99.8 2.4E-20 8.3E-25 125.9 11.3 82 8-93 1-85 (96)
42 3bs9_A Nucleolysin TIA-1 isofo 99.8 1.9E-20 6.7E-25 124.0 10.6 81 6-90 3-86 (87)
43 1x4a_A Splicing factor, argini 99.8 3.1E-20 1.1E-24 128.4 11.9 85 4-92 17-101 (109)
44 2do4_A Squamous cell carcinoma 99.8 3.8E-20 1.3E-24 125.9 12.0 84 4-91 12-97 (100)
45 3md1_A Nuclear and cytoplasmic 99.8 3.1E-20 1.1E-24 121.9 11.0 79 9-91 1-82 (83)
46 1sjq_A Polypyrimidine tract-bi 99.8 1.1E-20 3.8E-25 128.4 8.9 81 5-92 12-94 (105)
47 2dnz_A Probable RNA-binding pr 99.8 4E-20 1.4E-24 124.6 11.6 83 6-92 2-87 (95)
48 2wbr_A GW182, gawky, LD47780P; 99.8 2.2E-20 7.6E-25 121.5 9.6 76 6-88 4-79 (89)
49 2dnm_A SRP46 splicing factor; 99.8 2.8E-20 9.5E-25 127.3 10.7 86 3-92 7-95 (103)
50 2dgv_A HnRNP M, heterogeneous 99.8 2.7E-20 9.1E-25 124.7 10.3 86 3-92 2-88 (92)
51 2hvz_A Splicing factor, argini 99.8 1.3E-20 4.5E-25 128.5 8.6 76 10-91 1-76 (101)
52 2ywk_A Putative RNA-binding pr 99.8 2.9E-20 9.9E-25 125.3 10.2 82 3-88 10-93 (95)
53 2cq0_A Eukaryotic translation 99.8 5.1E-20 1.7E-24 126.0 11.3 84 5-92 11-97 (103)
54 1x5u_A Splicing factor 3B subu 99.8 5E-20 1.7E-24 126.4 11.1 85 4-92 10-97 (105)
55 2dnh_A Bruno-like 5, RNA bindi 99.8 7.1E-20 2.4E-24 125.7 11.8 84 6-93 12-100 (105)
56 2cqc_A Arginine/serine-rich sp 99.8 4.7E-20 1.6E-24 124.2 10.7 82 4-89 10-94 (95)
57 3ns6_A Eukaryotic translation 99.8 8.7E-21 3E-25 129.1 7.1 82 5-90 2-93 (100)
58 2cq3_A RNA-binding protein 9; 99.8 1.2E-19 4.1E-24 124.1 12.8 86 4-93 10-96 (103)
59 2cqi_A Nucleolysin TIAR; RNA r 99.8 7.9E-20 2.7E-24 125.0 11.9 85 4-92 10-95 (103)
60 2err_A Ataxin-2-binding protei 99.8 3.4E-20 1.2E-24 128.2 10.1 85 2-90 22-107 (109)
61 2cqb_A Peptidyl-prolyl CIS-tra 99.8 3.9E-20 1.3E-24 126.3 10.1 85 4-92 7-94 (102)
62 2d9p_A Polyadenylate-binding p 99.8 7.3E-20 2.5E-24 125.2 11.5 85 5-93 11-96 (103)
63 1x5s_A Cold-inducible RNA-bind 99.8 3.3E-20 1.1E-24 126.6 9.7 85 4-92 7-94 (102)
64 1x4d_A Matrin 3; structural ge 99.8 1.8E-20 6.2E-25 127.3 8.2 78 152-231 11-91 (102)
65 1x4h_A RNA-binding protein 28; 99.8 7.6E-20 2.6E-24 126.8 11.5 87 3-93 9-104 (111)
66 2dgo_A Cytotoxic granule-assoc 99.8 8.7E-20 3E-24 127.3 11.8 85 4-92 10-97 (115)
67 2cq1_A PTB-like protein L; RRM 99.8 1.1E-19 3.8E-24 123.4 11.9 80 6-92 12-93 (101)
68 2cpz_A CUG triplet repeat RNA- 99.8 5E-20 1.7E-24 128.6 10.4 85 5-93 21-108 (115)
69 2la6_A RNA-binding protein FUS 99.8 7.5E-20 2.6E-24 124.2 11.0 82 3-88 7-99 (99)
70 2cpe_A RNA-binding protein EWS 99.8 6.9E-20 2.4E-24 127.4 10.9 88 2-93 8-106 (113)
71 1p27_B RNA-binding protein 8A; 99.8 5.7E-20 1.9E-24 126.4 10.3 82 6-91 20-104 (106)
72 1sjq_A Polypyrimidine tract-bi 99.8 2.2E-20 7.6E-25 126.9 8.1 77 153-231 13-91 (105)
73 1oo0_B CG8781-PA, drosophila Y 99.8 6.8E-20 2.3E-24 126.8 10.8 83 5-91 22-107 (110)
74 1x5t_A Splicing factor 3B subu 99.8 4.1E-20 1.4E-24 124.8 9.2 83 6-92 2-88 (96)
75 2cpf_A RNA binding motif prote 99.8 5.6E-20 1.9E-24 124.6 9.8 83 6-92 2-90 (98)
76 2div_A TRNA selenocysteine ass 99.8 4.7E-20 1.6E-24 125.2 9.4 85 3-91 3-95 (99)
77 2cq1_A PTB-like protein L; RRM 99.8 1.1E-19 3.9E-24 123.4 11.2 79 151-231 10-90 (101)
78 3s8s_A Histone-lysine N-methyl 99.8 6.9E-20 2.4E-24 126.6 10.2 77 154-231 4-85 (110)
79 1wex_A Hypothetical protein (r 99.8 8.8E-20 3E-24 124.6 10.6 82 5-93 11-94 (104)
80 1x4d_A Matrin 3; structural ge 99.8 5.7E-20 2E-24 124.8 9.6 80 6-92 12-94 (102)
81 1wex_A Hypothetical protein (r 99.8 1.4E-19 4.9E-24 123.6 11.3 78 152-231 11-90 (104)
82 2ad9_A Polypyrimidine tract-bi 99.8 8.1E-20 2.8E-24 127.2 9.9 81 5-92 27-109 (119)
83 3ulh_A THO complex subunit 4; 99.8 1.6E-19 5.4E-24 124.4 11.3 81 4-88 24-106 (107)
84 2fy1_A RNA-binding motif prote 99.8 1E-19 3.5E-24 127.1 10.4 84 5-92 3-88 (116)
85 3mdf_A Peptidyl-prolyl CIS-tra 99.8 6.9E-20 2.3E-24 120.8 8.9 77 153-230 4-85 (85)
86 3s7r_A Heterogeneous nuclear r 99.8 1.8E-19 6.2E-24 119.4 11.0 80 3-87 5-87 (87)
87 2cph_A RNA binding motif prote 99.8 1.7E-19 5.8E-24 124.2 11.1 85 4-92 10-99 (107)
88 2ad9_A Polypyrimidine tract-bi 99.8 1.3E-19 4.3E-24 126.2 10.5 79 151-231 26-106 (119)
89 4a8x_A RNA-binding protein wit 99.8 1.7E-19 5.7E-24 119.7 10.6 81 7-91 2-86 (88)
90 2nlw_A Eukaryotic translation 99.8 8.1E-20 2.8E-24 125.4 9.3 81 6-90 12-100 (105)
91 2dgp_A Bruno-like 4, RNA bindi 99.8 9.8E-20 3.4E-24 125.2 9.6 85 4-92 8-98 (106)
92 2dh8_A DAZ-associated protein 99.8 7.7E-20 2.6E-24 125.5 9.0 87 2-93 9-98 (105)
93 1s79_A Lupus LA protein; RRM, 99.8 7.2E-20 2.5E-24 125.0 8.7 80 5-89 7-88 (103)
94 1why_A Hypothetical protein ri 99.8 2.6E-19 8.9E-24 121.1 11.3 81 4-91 12-94 (97)
95 1wi8_A EIF-4B, eukaryotic tran 99.8 2.1E-19 7.3E-24 123.1 11.0 82 5-92 11-96 (104)
96 2wbr_A GW182, gawky, LD47780P; 99.8 9.8E-20 3.3E-24 118.5 8.7 74 155-230 6-79 (89)
97 3p5t_L Cleavage and polyadenyl 99.8 2.2E-20 7.6E-25 124.6 5.8 79 10-92 2-85 (90)
98 2kxn_B Transformer-2 protein h 99.8 1E-19 3.4E-24 129.5 9.5 84 4-91 41-127 (129)
99 2dnq_A RNA-binding protein 4B; 99.8 2.6E-19 9E-24 119.4 10.9 80 4-92 3-82 (90)
100 1x4f_A Matrin 3; structural ge 99.8 6.3E-20 2.2E-24 126.4 8.1 82 5-93 21-105 (112)
101 2khc_A Testis-specific RNP-typ 99.8 1.3E-19 4.4E-24 127.0 9.8 80 5-88 36-118 (118)
102 2do0_A HnRNP M, heterogeneous 99.8 3.6E-19 1.2E-23 123.9 12.0 83 4-90 10-94 (114)
103 2cqd_A RNA-binding region cont 99.8 2.5E-19 8.5E-24 125.2 11.2 84 3-91 11-97 (116)
104 4f25_A Polyadenylate-binding p 99.8 1.1E-19 3.6E-24 126.9 9.2 75 155-230 4-81 (115)
105 2lkz_A RNA-binding protein 5; 99.8 4.5E-20 1.5E-24 124.0 7.0 76 155-231 8-94 (95)
106 2ytc_A PRE-mRNA-splicing facto 99.8 1.7E-19 5.9E-24 118.9 9.3 79 3-88 6-85 (85)
107 2dhg_A TRNA selenocysteine ass 99.8 1.3E-19 4.5E-24 124.1 9.0 86 4-93 4-93 (104)
108 1p1t_A Cleavage stimulation fa 99.8 4.3E-20 1.5E-24 126.5 6.5 83 6-92 5-90 (104)
109 2cpi_A CCR4-NOT transcription 99.8 1.8E-19 6.2E-24 124.9 9.7 87 4-91 10-102 (111)
110 2cpj_A Non-POU domain-containi 99.8 2.3E-19 7.9E-24 121.8 10.0 81 5-92 11-91 (99)
111 1x5o_A RNA binding motif, sing 99.8 5.4E-19 1.8E-23 123.1 12.0 83 4-90 20-112 (114)
112 2cqp_A RNA-binding protein 12; 99.8 1.2E-19 4.1E-24 123.0 8.3 82 5-90 11-95 (98)
113 1u6f_A Tcubp1, RNA-binding pro 99.8 2.7E-19 9.3E-24 129.0 10.6 86 4-93 37-125 (139)
114 2lea_A Serine/arginine-rich sp 99.8 2.9E-20 1E-24 133.3 5.4 77 154-231 45-126 (135)
115 2dng_A Eukaryotic translation 99.8 4.1E-19 1.4E-23 121.5 10.8 81 6-92 12-95 (103)
116 3ucg_A Polyadenylate-binding p 99.8 3.2E-19 1.1E-23 118.6 10.1 78 8-90 5-85 (89)
117 2dgw_A Probable RNA-binding pr 99.8 4.8E-19 1.6E-23 118.3 10.9 82 4-91 5-88 (91)
118 2e5h_A Zinc finger CCHC-type a 99.8 3E-19 1E-23 120.0 10.0 78 152-230 12-94 (94)
119 2krb_A Eukaryotic translation 99.8 6.1E-20 2.1E-24 120.0 6.3 72 9-84 1-80 (81)
120 1x4f_A Matrin 3; structural ge 99.8 1.4E-19 4.9E-24 124.6 8.4 77 153-231 22-101 (112)
121 2dnp_A RNA-binding protein 14; 99.8 4.1E-19 1.4E-23 118.4 10.5 81 3-92 3-83 (90)
122 2ek1_A RNA-binding protein 12; 99.8 9.3E-20 3.2E-24 122.8 7.3 80 5-88 11-93 (95)
123 3ex7_B RNA-binding protein 8A; 99.8 2.9E-19 1E-23 126.6 10.2 85 4-92 17-104 (126)
124 2cpj_A Non-POU domain-containi 99.8 4.9E-19 1.7E-23 120.2 10.9 79 151-231 10-88 (99)
125 2xnq_A Nuclear polyadenylated 99.8 6.3E-19 2.1E-23 119.2 11.4 77 5-90 18-95 (97)
126 2dgt_A RNA-binding protein 30; 99.8 5.5E-19 1.9E-23 118.3 11.0 82 2-92 3-84 (92)
127 2dnh_A Bruno-like 5, RNA bindi 99.8 9.8E-19 3.3E-23 119.9 12.1 80 151-230 10-95 (105)
128 1x4e_A RNA binding motif, sing 99.8 8.8E-20 3E-24 120.4 6.6 78 6-87 2-82 (85)
129 1whx_A Hypothetical protein ri 99.8 1.7E-19 5.9E-24 124.9 8.2 78 6-90 7-84 (111)
130 2la6_A RNA-binding protein FUS 99.8 8E-19 2.7E-23 119.1 11.3 80 150-230 7-99 (99)
131 3md1_A Nuclear and cytoplasmic 99.8 4.3E-19 1.5E-23 116.4 9.7 74 157-231 2-80 (83)
132 2la4_A Nuclear and cytoplasmic 99.8 1.1E-19 3.9E-24 123.8 7.1 78 5-89 23-100 (101)
133 2ytc_A PRE-mRNA-splicing facto 99.8 2.7E-19 9.1E-24 118.0 8.6 77 152-230 8-85 (85)
134 2rs2_A Musashi-1, RNA-binding 99.8 4.5E-19 1.5E-23 122.5 10.1 84 4-92 20-106 (109)
135 3bs9_A Nucleolysin TIA-1 isofo 99.8 3.4E-19 1.2E-23 118.0 9.2 76 155-231 5-85 (87)
136 1why_A Hypothetical protein ri 99.8 7.4E-19 2.5E-23 118.8 11.0 77 152-230 13-91 (97)
137 2cpz_A CUG triplet repeat RNA- 99.8 6.6E-19 2.3E-23 122.8 10.9 81 150-231 19-104 (115)
138 2cq3_A RNA-binding protein 9; 99.8 1.2E-18 4.1E-23 119.1 11.9 80 151-231 10-92 (103)
139 1x4c_A Splicing factor, argini 99.8 1E-18 3.4E-23 120.5 11.5 80 5-92 11-95 (108)
140 2cqc_A Arginine/serine-rich sp 99.8 4.8E-19 1.6E-23 119.2 9.7 79 152-231 11-94 (95)
141 2cph_A RNA binding motif prote 99.8 9.3E-19 3.2E-23 120.4 11.3 79 152-231 11-96 (107)
142 3n9u_C Cleavage and polyadenyl 99.8 2.7E-19 9.2E-24 131.3 9.1 79 8-90 54-137 (156)
143 1x4a_A Splicing factor, argini 99.8 1E-18 3.5E-23 120.7 11.5 80 150-230 16-97 (109)
144 2dnz_A Probable RNA-binding pr 99.8 1.2E-18 4E-23 117.3 11.4 76 155-231 4-84 (95)
145 2m2b_A RNA-binding protein 10; 99.8 1.1E-19 3.7E-24 129.8 6.6 83 6-93 20-111 (131)
146 2x1f_A MRNA 3'-END-processing 99.8 5.4E-19 1.9E-23 119.3 9.8 76 155-231 1-81 (96)
147 2dgu_A Heterogeneous nuclear r 99.8 8.5E-19 2.9E-23 119.9 10.8 81 4-93 6-86 (103)
148 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.8E-19 6.3E-24 122.5 7.5 80 6-91 16-99 (100)
149 2fc9_A NCL protein; structure 99.8 5.1E-19 1.7E-23 120.5 9.7 84 4-92 10-93 (101)
150 2dnq_A RNA-binding protein 4B; 99.8 1E-18 3.4E-23 116.5 10.9 75 153-231 5-79 (90)
151 2jvr_A Nucleolar protein 3; RN 99.8 3.5E-19 1.2E-23 122.9 8.8 81 5-90 24-105 (111)
152 1x4g_A Nucleolysin TIAR; struc 99.8 7.7E-19 2.7E-23 121.3 10.6 81 5-92 21-101 (109)
153 2lxi_A RNA-binding protein 10; 99.8 4.7E-20 1.6E-24 123.2 4.2 74 156-230 1-81 (91)
154 2jvo_A Nucleolar protein 3; nu 99.8 6.2E-19 2.1E-23 121.5 10.0 80 4-92 26-105 (108)
155 2dgx_A KIAA0430 protein; RRM d 99.8 4.2E-19 1.4E-23 119.8 8.8 76 155-231 8-89 (96)
156 2kt5_A RNA and export factor-b 99.8 8.5E-19 2.9E-23 123.9 10.8 84 5-92 31-116 (124)
157 2fc8_A NCL protein; structure 99.8 8.6E-19 3E-23 119.6 10.4 85 4-92 10-94 (102)
158 2kvi_A Nuclear polyadenylated 99.8 3.9E-19 1.3E-23 120.0 8.6 80 4-92 5-85 (96)
159 1wg5_A Heterogeneous nuclear r 99.8 7.7E-19 2.6E-23 120.3 10.1 82 5-91 11-95 (104)
160 2db1_A Heterogeneous nuclear r 99.8 4.1E-19 1.4E-23 124.4 8.9 81 4-89 12-97 (118)
161 2cqi_A Nucleolysin TIAR; RNA r 99.8 9.7E-19 3.3E-23 119.5 10.6 78 152-230 11-91 (103)
162 2dis_A Unnamed protein product 99.8 5.7E-19 2E-23 121.9 9.4 84 5-92 4-94 (109)
163 2khc_A Testis-specific RNP-typ 99.8 7.8E-19 2.7E-23 123.0 10.2 80 150-230 34-118 (118)
164 2do4_A Squamous cell carcinoma 99.8 1.4E-18 4.7E-23 118.1 11.1 78 152-230 13-94 (100)
165 2dgo_A Cytotoxic granule-assoc 99.8 9.8E-19 3.3E-23 121.9 10.7 80 151-231 10-94 (115)
166 2hgl_A HNRPF protein, heteroge 99.8 2.4E-19 8.2E-24 128.2 7.6 82 3-89 38-124 (136)
167 1whw_A Hypothetical protein ri 99.8 8.8E-19 3E-23 118.9 10.0 77 154-231 6-87 (99)
168 2cq4_A RNA binding motif prote 99.8 1.9E-19 6.4E-24 125.4 6.8 79 8-91 24-105 (114)
169 2dgs_A DAZ-associated protein 99.8 1.8E-18 6E-23 117.4 11.5 77 152-230 6-87 (99)
170 1whx_A Hypothetical protein ri 99.8 3.4E-19 1.2E-23 123.4 8.0 75 155-231 9-83 (111)
171 1fjc_A Nucleolin RBD2, protein 99.8 3.8E-19 1.3E-23 120.0 8.0 80 6-91 13-92 (96)
172 1x5u_A Splicing factor 3B subu 99.8 1.3E-18 4.5E-23 119.3 10.9 80 151-231 10-94 (105)
173 2ywk_A Putative RNA-binding pr 99.8 5.7E-19 1.9E-23 118.9 8.9 79 152-231 12-94 (95)
174 1x5s_A Cold-inducible RNA-bind 99.8 8.9E-19 3E-23 119.5 9.9 79 152-231 8-91 (102)
175 2a3j_A U1 small nuclear ribonu 99.8 8.4E-19 2.9E-23 124.0 9.8 79 152-231 25-109 (127)
176 1h2v_Z 20 kDa nuclear CAP bind 99.8 1.7E-18 5.9E-23 127.2 11.9 82 7-92 37-121 (156)
177 2cpd_A Apobec-1 stimulating pr 99.8 2.3E-18 7.9E-23 116.8 11.6 78 6-92 12-91 (99)
178 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.8 1.1E-18 3.6E-23 125.9 10.5 79 5-87 59-140 (140)
179 2d9p_A Polyadenylate-binding p 99.8 1.6E-18 5.5E-23 118.4 10.8 79 152-231 11-92 (103)
180 1wez_A HnRNP H', FTP-3, hetero 99.8 9.9E-19 3.4E-23 119.2 9.6 82 4-91 10-93 (102)
181 2jrs_A RNA-binding protein 39; 99.8 1.9E-18 6.6E-23 119.1 11.1 80 151-231 21-105 (108)
182 2cq0_A Eukaryotic translation 99.8 1.1E-18 3.8E-23 119.2 9.8 79 152-231 11-94 (103)
183 2e5j_A Methenyltetrahydrofolat 99.8 6.9E-19 2.4E-23 119.0 8.6 80 6-91 16-95 (97)
184 1rk8_A CG8781-PA, CG8781-PA pr 99.8 7.9E-19 2.7E-23 130.2 9.6 77 153-230 69-150 (165)
185 1rk8_A CG8781-PA, CG8781-PA pr 99.8 1.4E-18 4.9E-23 128.8 11.0 83 6-92 69-154 (165)
186 2dnm_A SRP46 splicing factor; 99.8 1.3E-18 4.4E-23 119.0 9.9 78 152-230 9-91 (103)
187 2kn4_A Immunoglobulin G-bindin 99.8 1.2E-18 4E-23 128.3 10.4 83 6-92 67-152 (158)
188 2cqb_A Peptidyl-prolyl CIS-tra 99.8 6.3E-19 2.1E-23 120.3 8.3 78 152-230 8-90 (102)
189 2mss_A Protein (musashi1); RNA 99.8 3.3E-19 1.1E-23 114.8 6.5 72 11-87 1-75 (75)
190 2err_A Ataxin-2-binding protei 99.8 8.9E-19 3E-23 121.0 9.1 81 150-231 23-106 (109)
191 2cqg_A TDP-43, TAR DNA-binding 99.8 2.8E-18 9.6E-23 117.2 11.5 82 5-92 11-95 (103)
192 2xnq_A Nuclear polyadenylated 99.8 1.5E-18 5.2E-23 117.3 9.9 77 151-231 17-94 (97)
193 2lea_A Serine/arginine-rich sp 99.8 2.7E-19 9.4E-24 128.2 6.5 85 4-92 42-129 (135)
194 2cpx_A Hypothetical protein FL 99.8 7.2E-19 2.5E-23 122.6 8.5 82 6-92 22-107 (115)
195 3egn_A RNA-binding protein 40; 99.8 7.2E-19 2.4E-23 127.4 8.8 83 6-92 42-132 (143)
196 2dgv_A HnRNP M, heterogeneous 99.8 2E-18 6.9E-23 115.5 10.3 77 154-231 6-85 (92)
197 2jvo_A Nucleolar protein 3; nu 99.8 1.3E-18 4.4E-23 119.9 9.5 75 152-230 27-101 (108)
198 2cpy_A RNA-binding protein 12; 99.8 5.8E-19 2E-23 122.9 7.8 81 6-91 12-95 (114)
199 1x4g_A Nucleolysin TIAR; struc 99.8 1.1E-18 3.9E-23 120.5 9.2 77 153-231 22-98 (109)
200 2cqh_A IGF-II mRNA-binding pro 99.8 6.4E-19 2.2E-23 118.2 7.5 81 4-92 3-85 (93)
201 2cpf_A RNA binding motif prote 99.8 1.2E-18 4E-23 118.0 8.8 76 155-231 4-87 (98)
202 1uaw_A Mouse-musashi-1; RNP-ty 99.8 4.3E-19 1.5E-23 114.8 6.4 73 10-87 1-76 (77)
203 4a8x_A RNA-binding protein wit 99.8 1.3E-18 4.5E-23 115.3 8.9 75 155-230 3-83 (88)
204 2ki2_A SS-DNA binding protein 99.8 1.7E-19 5.7E-24 120.3 4.5 78 10-92 2-82 (90)
205 1p27_B RNA-binding protein 8A; 99.8 3E-18 1E-22 117.7 10.9 78 152-230 19-101 (106)
206 3zzy_A Polypyrimidine tract-bi 99.8 1.5E-18 5.1E-23 122.3 9.3 73 158-230 30-104 (130)
207 2e5j_A Methenyltetrahydrofolat 99.8 4.6E-18 1.6E-22 114.9 11.4 78 152-231 15-93 (97)
208 2i2y_A Fusion protein consists 99.8 1.8E-18 6.1E-23 126.3 10.1 79 6-90 70-148 (150)
209 2fy1_A RNA-binding motif prote 99.8 2.6E-18 8.8E-23 120.0 10.3 77 154-231 5-85 (116)
210 3zzy_A Polypyrimidine tract-bi 99.8 3.1E-18 1.1E-22 120.6 10.7 79 9-93 28-109 (130)
211 2cq2_A Hypothetical protein LO 99.8 1.5E-18 5E-23 119.6 8.8 79 5-90 21-106 (114)
212 1oo0_B CG8781-PA, drosophila Y 99.8 1.9E-18 6.3E-23 119.6 9.4 78 152-230 22-104 (110)
213 2hvz_A Splicing factor, argini 99.8 1E-18 3.5E-23 119.0 8.0 73 157-230 1-73 (101)
214 2jvr_A Nucleolar protein 3; RN 99.8 7.1E-19 2.4E-23 121.4 7.2 76 154-230 26-103 (111)
215 1x5t_A Splicing factor 3B subu 99.8 9.3E-19 3.2E-23 118.0 7.6 76 155-231 4-85 (96)
216 2cpi_A CCR4-NOT transcription 99.8 1.3E-18 4.5E-23 120.5 8.5 78 152-230 11-99 (111)
217 2div_A TRNA selenocysteine ass 99.8 1.8E-18 6.1E-23 117.3 9.0 77 153-230 6-92 (99)
218 1s79_A Lupus LA protein; RRM, 99.8 1.7E-18 5.7E-23 118.2 8.9 75 154-230 9-87 (103)
219 3lqv_A PRE-mRNA branch site pr 99.8 3.6E-18 1.2E-22 119.0 10.8 76 154-230 6-83 (115)
220 1x4b_A Heterogeneous nuclear r 99.8 1.9E-18 6.3E-23 120.7 9.3 80 9-93 27-109 (116)
221 2la4_A Nuclear and cytoplasmic 99.8 1.2E-18 4.2E-23 118.6 8.2 77 153-231 24-100 (101)
222 3ns6_A Eukaryotic translation 99.8 8.8E-19 3E-23 119.1 7.3 76 155-230 5-91 (100)
223 2dgt_A RNA-binding protein 30; 99.8 2.7E-18 9.3E-23 114.9 9.6 75 152-230 6-80 (92)
224 1wg1_A KIAA1579 protein, homol 99.8 2.4E-18 8.2E-23 114.2 9.2 79 6-92 2-80 (88)
225 1x4h_A RNA-binding protein 28; 99.8 3.6E-18 1.2E-22 118.2 10.5 78 152-230 11-99 (111)
226 2dgp_A Bruno-like 4, RNA bindi 99.8 3E-18 1E-22 117.7 9.9 79 151-230 8-94 (106)
227 2kvi_A Nuclear polyadenylated 99.8 2.7E-18 9.1E-23 115.9 9.5 74 153-230 7-81 (96)
228 2jwn_A Embryonic polyadenylate 99.8 2.4E-18 8.1E-23 121.6 9.6 78 9-91 36-116 (124)
229 1x4e_A RNA binding motif, sing 99.8 7.2E-19 2.5E-23 115.9 6.4 77 154-231 3-84 (85)
230 3ex7_B RNA-binding protein 8A; 99.8 2.9E-18 1E-22 121.4 10.0 78 152-230 18-100 (126)
231 2cq2_A Hypothetical protein LO 99.8 1E-18 3.5E-23 120.4 7.3 78 152-231 21-105 (114)
232 3pgw_S U1-70K; protein-RNA com 99.8 7.6E-19 2.6E-23 148.9 8.1 77 153-230 99-180 (437)
233 1sjr_A Polypyrimidine tract-bi 99.8 3.3E-18 1.1E-22 125.0 10.1 81 8-93 45-127 (164)
234 1x5p_A Negative elongation fac 99.8 7.5E-18 2.6E-22 113.8 11.2 78 6-92 12-89 (97)
235 2kxn_B Transformer-2 protein h 99.8 3.4E-18 1.2E-22 121.5 9.9 78 152-230 42-124 (129)
236 2cpd_A Apobec-1 stimulating pr 99.8 6.3E-18 2.1E-22 114.7 10.7 77 151-231 10-88 (99)
237 2do0_A HnRNP M, heterogeneous 99.8 6.2E-18 2.1E-22 117.6 11.0 78 152-230 11-92 (114)
238 1fj7_A Nucleolin RBD1, protein 99.8 3.2E-19 1.1E-23 121.5 4.2 81 6-92 14-97 (101)
239 2dnn_A RNA-binding protein 12; 99.8 2.2E-18 7.6E-23 118.6 8.4 74 9-88 16-91 (109)
240 2j76_E EIF-4B, EIF4B, eukaryot 99.8 1.4E-18 4.7E-23 118.2 7.3 78 151-231 14-97 (100)
241 2dnp_A RNA-binding protein 14; 99.8 3E-18 1E-22 114.2 8.7 75 153-231 6-80 (90)
242 1wf1_A RNA-binding protein RAL 99.8 4.2E-18 1.4E-22 117.8 9.8 76 7-91 25-101 (110)
243 2dhg_A TRNA selenocysteine ass 99.8 2.8E-18 9.6E-23 117.4 8.7 77 153-230 6-88 (104)
244 1wel_A RNA-binding protein 12; 99.8 6.3E-19 2.2E-23 124.6 5.6 80 6-90 22-104 (124)
245 3ucg_A Polyadenylate-binding p 99.8 3.4E-18 1.1E-22 113.6 8.7 73 156-230 6-83 (89)
246 2diu_A KIAA0430 protein; struc 99.8 5.4E-18 1.9E-22 111.3 9.5 72 154-231 6-83 (96)
247 3p5t_L Cleavage and polyadenyl 99.8 1.1E-18 3.9E-23 116.3 6.4 73 157-230 2-81 (90)
248 3ulh_A THO complex subunit 4; 99.8 5.6E-18 1.9E-22 116.5 9.9 77 153-230 26-106 (107)
249 3d2w_A TAR DNA-binding protein 99.8 6.5E-18 2.2E-22 112.3 9.8 80 3-92 5-86 (89)
250 2e44_A Insulin-like growth fac 99.8 6.1E-18 2.1E-22 114.0 9.9 81 5-90 11-92 (96)
251 3tyt_A Heterogeneous nuclear r 99.8 3.5E-18 1.2E-22 131.0 9.8 76 154-230 2-78 (205)
252 2lmi_A GRSF-1, G-rich sequence 99.8 8.4E-19 2.9E-23 120.7 5.6 82 4-90 6-92 (107)
253 1p1t_A Cleavage stimulation fa 99.8 3.1E-18 1.1E-22 117.2 8.3 76 155-231 7-87 (104)
254 2cpe_A RNA-binding protein EWS 99.8 5.4E-18 1.8E-22 117.8 9.6 79 152-231 11-102 (113)
255 2dgu_A Heterogeneous nuclear r 99.7 4.4E-18 1.5E-22 116.3 8.8 73 154-230 9-81 (103)
256 1nu4_A U1A RNA binding domain; 99.7 2.5E-18 8.5E-23 116.2 7.5 78 153-231 5-88 (97)
257 1wi8_A EIF-4B, eukaryotic tran 99.7 6.8E-18 2.3E-22 115.5 9.6 75 153-230 12-92 (104)
258 2xs2_A Deleted in azoospermia- 99.7 1.7E-18 5.8E-23 118.1 6.2 83 4-92 4-88 (102)
259 2cqp_A RNA-binding protein 12; 99.7 2.7E-18 9.4E-23 116.2 7.0 79 152-231 11-94 (98)
260 2dng_A Eukaryotic translation 99.7 9.7E-18 3.3E-22 114.5 9.7 75 153-230 12-91 (103)
261 2cq4_A RNA binding motif prote 99.7 5.1E-18 1.7E-22 118.1 8.3 74 155-230 24-102 (114)
262 2lcw_A RNA-binding protein FUS 99.6 1.2E-19 4.1E-24 126.8 0.0 85 4-92 2-97 (116)
263 3s7r_A Heterogeneous nuclear r 99.7 9.8E-18 3.3E-22 110.9 9.3 76 152-229 7-87 (87)
264 2m2b_A RNA-binding protein 10; 99.7 3.5E-18 1.2E-22 121.9 7.6 78 151-230 18-106 (131)
265 1iqt_A AUF1, heterogeneous nuc 99.7 1.4E-18 4.7E-23 111.8 4.9 72 11-87 1-75 (75)
266 1wf1_A RNA-binding protein RAL 99.7 8.6E-18 2.9E-22 116.2 9.3 74 153-230 24-98 (110)
267 2e5i_A Heterogeneous nuclear r 99.7 3E-17 1E-21 115.1 12.1 80 7-93 21-105 (124)
268 1u6f_A Tcubp1, RNA-binding pro 99.7 9.3E-18 3.2E-22 120.9 9.8 79 152-231 38-121 (139)
269 2hzc_A Splicing factor U2AF 65 99.7 7.5E-18 2.6E-22 111.4 8.5 73 6-86 3-86 (87)
270 2nlw_A Eukaryotic translation 99.7 5.5E-18 1.9E-22 116.2 8.1 78 152-230 11-98 (105)
271 1x5o_A RNA binding motif, sing 99.7 5.2E-17 1.8E-21 112.9 13.2 78 152-230 21-110 (114)
272 2mss_A Protein (musashi1); RNA 99.7 4E-18 1.4E-22 109.6 6.8 70 158-229 1-75 (75)
273 1sjr_A Polypyrimidine tract-bi 99.7 1E-17 3.5E-22 122.4 9.7 74 157-230 47-122 (164)
274 2kt5_A RNA and export factor-b 99.7 1.6E-17 5.4E-22 117.4 10.5 78 152-230 31-112 (124)
275 2f3j_A RNA and export factor b 99.7 1E-17 3.4E-22 125.5 9.6 82 6-91 85-168 (177)
276 2cqd_A RNA-binding region cont 99.7 1.3E-17 4.5E-22 116.3 9.5 78 151-230 12-94 (116)
277 1x4c_A Splicing factor, argini 99.7 1.4E-17 4.8E-22 114.7 9.4 75 154-230 13-91 (108)
278 2hgm_A HNRPF protein, heteroge 99.7 6.3E-18 2.1E-22 119.1 7.7 78 5-88 38-119 (126)
279 2e5g_A U6 snRNA-specific termi 99.7 1.7E-17 6E-22 111.4 9.5 81 4-92 3-84 (94)
280 3n9u_C Cleavage and polyadenyl 99.7 1.1E-17 3.7E-22 122.7 9.0 75 155-230 54-135 (156)
281 2e5i_A Heterogeneous nuclear r 99.7 3.7E-17 1.3E-21 114.7 11.4 76 154-230 21-100 (124)
282 3q2s_C Cleavage and polyadenyl 99.7 7.3E-18 2.5E-22 131.3 8.6 80 8-91 67-151 (229)
283 2ku7_A MLL1 PHD3-CYP33 RRM chi 99.7 1.5E-17 5E-22 119.9 9.6 78 151-229 58-140 (140)
284 2ek1_A RNA-binding protein 12; 99.7 3.5E-18 1.2E-22 114.9 5.9 76 154-230 13-93 (95)
285 1x5p_A Negative elongation fac 99.7 3.5E-17 1.2E-21 110.5 10.7 76 152-231 11-86 (97)
286 2cqh_A IGF-II mRNA-binding pro 99.7 9.2E-18 3.1E-22 112.5 7.5 74 154-230 6-81 (93)
287 2fc9_A NCL protein; structure 99.7 1.7E-17 6E-22 112.8 9.0 75 152-230 11-89 (101)
288 2e44_A Insulin-like growth fac 99.7 2.4E-17 8.2E-22 111.1 9.5 76 154-230 13-90 (96)
289 2dha_A FLJ20171 protein; RRM d 99.7 3.4E-18 1.2E-22 120.1 5.4 77 7-88 21-103 (123)
290 1h2v_Z 20 kDa nuclear CAP bind 99.7 2.2E-17 7.5E-22 121.3 10.0 78 152-230 35-117 (156)
291 2dh8_A DAZ-associated protein 99.7 1.2E-17 4.2E-22 114.4 8.1 77 152-230 12-93 (105)
292 1wg1_A KIAA1579 protein, homol 99.7 9.6E-18 3.3E-22 111.2 7.2 74 155-231 4-77 (88)
293 2dgw_A Probable RNA-binding pr 99.7 2.5E-17 8.6E-22 109.9 9.2 76 153-231 7-86 (91)
294 3beg_B Splicing factor, argini 99.7 1.5E-17 5.3E-22 115.8 8.4 76 7-90 14-94 (115)
295 2cpx_A Hypothetical protein FL 99.7 3.6E-17 1.2E-21 113.9 10.3 78 153-231 22-104 (115)
296 1uaw_A Mouse-musashi-1; RNP-ty 99.7 8.8E-18 3E-22 108.5 6.6 71 157-229 1-76 (77)
297 3md3_A Nuclear and cytoplasmic 99.7 5.3E-17 1.8E-21 119.8 11.7 80 5-88 83-165 (166)
298 2hgn_A Heterogeneous nuclear r 99.7 3.2E-18 1.1E-22 122.8 4.8 80 6-91 43-124 (139)
299 4f02_A Polyadenylate-binding p 99.7 2.6E-17 8.7E-22 127.0 10.2 81 8-92 102-183 (213)
300 3d2w_A TAR DNA-binding protein 99.7 2.5E-17 8.7E-22 109.4 8.5 74 152-230 7-82 (89)
301 2dis_A Unnamed protein product 99.7 2.1E-17 7.1E-22 114.0 8.4 76 154-230 6-90 (109)
302 2krb_A Eukaryotic translation 99.7 8.9E-18 3E-22 109.6 6.1 70 157-227 2-81 (81)
303 1wel_A RNA-binding protein 12; 99.7 1.5E-17 5E-22 117.5 7.2 76 153-230 22-102 (124)
304 2ki2_A SS-DNA binding protein 99.7 5.3E-18 1.8E-22 113.0 4.3 72 157-230 2-78 (90)
305 2bz2_A Negative elongation fac 99.7 4.2E-17 1.4E-21 114.5 9.1 78 6-92 36-113 (121)
306 3beg_B Splicing factor, argini 99.7 3.2E-17 1.1E-21 114.2 8.5 73 155-230 15-92 (115)
307 2jwn_A Embryonic polyadenylate 99.7 1.7E-17 5.9E-22 117.1 7.1 74 155-230 35-113 (124)
308 1wf0_A TDP-43, TAR DNA-binding 99.7 1.8E-17 6.1E-22 109.9 6.7 79 6-92 2-80 (88)
309 1wg5_A Heterogeneous nuclear r 99.7 8.8E-17 3E-21 110.0 10.2 77 153-231 12-93 (104)
310 2pe8_A Splicing factor 45; RRM 99.7 1.5E-16 5.3E-21 108.7 11.0 80 6-89 5-93 (105)
311 2dnl_A Cytoplasmic polyadenyla 99.7 5.7E-17 2E-21 112.7 9.0 64 4-72 3-72 (114)
312 2rs2_A Musashi-1, RNA-binding 99.7 3.3E-17 1.1E-21 113.0 7.7 78 151-230 20-102 (109)
313 2qfj_A FBP-interacting repress 99.7 1.1E-16 3.9E-21 123.3 11.4 82 7-92 123-207 (216)
314 2cqg_A TDP-43, TAR DNA-binding 99.7 1.1E-16 3.7E-21 109.3 10.0 76 152-230 11-91 (103)
315 1wez_A HnRNP H', FTP-3, hetero 99.7 8.5E-17 2.9E-21 109.6 9.3 75 153-230 12-90 (102)
316 2yh0_A Splicing factor U2AF 65 99.7 1.1E-16 3.9E-21 121.6 11.1 81 7-91 112-195 (198)
317 2fc8_A NCL protein; structure 99.7 9.7E-17 3.3E-21 109.3 9.5 77 151-231 10-91 (102)
318 2db1_A Heterogeneous nuclear r 99.7 2.9E-17 9.8E-22 115.0 6.9 76 153-230 14-96 (118)
319 2g4b_A Splicing factor U2AF 65 99.7 1.1E-16 3.7E-21 119.0 10.4 77 7-87 92-171 (172)
320 2cpy_A RNA-binding protein 12; 99.7 3.6E-17 1.2E-21 113.8 7.2 77 152-230 11-92 (114)
321 1x4b_A Heterogeneous nuclear r 99.7 4.6E-17 1.6E-21 113.6 7.5 75 154-230 25-104 (116)
322 1fje_B Nucleolin RBD12, protei 99.7 1.1E-16 3.6E-21 119.5 9.6 78 7-90 97-174 (175)
323 2hgl_A HNRPF protein, heteroge 99.7 5.2E-17 1.8E-21 116.1 7.3 76 153-230 41-123 (136)
324 1fjc_A Nucleolin RBD2, protein 99.7 2.2E-17 7.4E-22 111.3 5.0 77 152-230 12-89 (96)
325 1fj7_A Nucleolin RBD1, protein 99.7 2.3E-17 8E-22 112.2 5.1 75 153-230 14-93 (101)
326 3u1l_A PRE-mRNA-splicing facto 99.7 8E-17 2.7E-21 125.2 8.8 81 5-92 130-231 (240)
327 3pgw_S U1-70K; protein-RNA com 99.7 1.4E-16 4.8E-21 135.0 10.8 82 7-92 100-184 (437)
328 3nmr_A Cugbp ELAV-like family 99.7 2E-16 6.8E-21 117.8 10.4 78 7-88 93-175 (175)
329 2lmi_A GRSF-1, G-rich sequence 99.7 5.4E-17 1.9E-21 111.6 6.6 77 152-230 7-90 (107)
330 2adc_A Polypyrimidine tract-bi 99.7 1.4E-16 4.7E-21 124.3 9.8 81 149-230 27-108 (229)
331 3egn_A RNA-binding protein 40; 99.7 6.4E-17 2.2E-21 117.0 7.2 77 153-230 42-128 (143)
332 1b7f_A Protein (SXL-lethal pro 99.7 3.5E-16 1.2E-20 115.8 11.4 78 6-87 86-168 (168)
333 3q2s_C Cleavage and polyadenyl 99.7 9E-17 3.1E-21 125.1 8.4 75 155-230 67-148 (229)
334 2bz2_A Negative elongation fac 99.7 2.1E-16 7.2E-21 110.9 9.5 74 154-231 37-110 (121)
335 2cjk_A Nuclear polyadenylated 99.7 7.3E-17 2.5E-21 119.4 7.5 78 8-90 86-166 (167)
336 1iqt_A AUF1, heterogeneous nuc 99.7 3.3E-17 1.1E-21 105.2 4.8 70 158-229 1-75 (75)
337 1l3k_A Heterogeneous nuclear r 99.7 2.6E-16 9E-21 119.4 10.6 82 7-93 102-186 (196)
338 2e5g_A U6 snRNA-specific termi 99.7 1.6E-16 5.6E-21 106.5 8.3 74 155-230 7-80 (94)
339 2hzc_A Splicing factor U2AF 65 99.7 8.7E-17 3E-21 106.2 6.8 71 155-228 5-86 (87)
340 2dnn_A RNA-binding protein 12; 99.7 1E-16 3.5E-21 110.2 7.3 73 155-230 15-91 (109)
341 2f3j_A RNA and export factor b 99.7 2.3E-16 8E-21 118.0 9.7 78 152-230 84-165 (177)
342 2pe8_A Splicing factor 45; RRM 99.7 3.5E-16 1.2E-20 106.9 9.7 76 154-230 6-92 (105)
343 2j8a_A Histone-lysine N-methyl 99.7 1.2E-16 4.1E-21 110.8 7.3 75 10-88 3-94 (136)
344 2voo_A Lupus LA protein; RNA-b 99.7 3.8E-16 1.3E-20 118.5 10.4 77 9-90 109-187 (193)
345 2lcw_A RNA-binding protein FUS 99.5 5.2E-18 1.8E-22 118.4 0.0 77 154-231 5-94 (116)
346 2dit_A HIV TAT specific factor 99.7 5.1E-16 1.7E-20 107.6 10.1 88 5-93 11-105 (112)
347 1fxl_A Paraneoplastic encephal 99.7 6.1E-16 2.1E-20 114.2 10.3 77 7-87 86-167 (167)
348 1wf0_A TDP-43, TAR DNA-binding 99.7 7.6E-17 2.6E-21 106.8 4.7 71 155-230 4-76 (88)
349 3u1l_A PRE-mRNA-splicing facto 99.6 3E-16 1E-20 121.9 8.5 77 152-230 130-227 (240)
350 2xs2_A Deleted in azoospermia- 99.6 8.9E-17 3E-21 109.5 4.4 73 155-230 8-84 (102)
351 3v4m_A Splicing factor U2AF 65 99.6 1.5E-15 5.1E-20 103.8 10.5 83 6-88 2-95 (105)
352 1qm9_A Polypyrimidine tract-bi 99.6 3.5E-16 1.2E-20 119.1 8.1 75 155-230 2-77 (198)
353 2hgn_A Heterogeneous nuclear r 99.6 1.6E-16 5.5E-21 113.9 4.8 74 154-230 44-121 (139)
354 2hgm_A HNRPF protein, heteroge 99.6 6.9E-16 2.4E-20 108.6 7.5 74 154-230 40-119 (126)
355 3pgw_A U1-A; protein-RNA compl 99.6 2.4E-15 8.2E-20 120.6 10.9 78 5-88 203-281 (282)
356 2dha_A FLJ20171 protein; RRM d 99.6 4.7E-16 1.6E-20 109.1 5.7 75 154-230 21-103 (123)
357 2dit_A HIV TAT specific factor 99.6 4.5E-15 1.5E-19 102.7 9.6 78 152-230 11-100 (112)
358 3v4m_A Splicing factor U2AF 65 99.6 2.5E-15 8.7E-20 102.6 7.9 76 154-230 3-95 (105)
359 2voo_A Lupus LA protein; RNA-b 99.6 4.2E-15 1.4E-19 112.7 9.5 74 155-230 108-185 (193)
360 3ue2_A Poly(U)-binding-splicin 99.6 4.3E-15 1.5E-19 103.4 8.8 81 7-88 18-107 (118)
361 3sde_A Paraspeckle component 1 99.6 5.4E-15 1.9E-19 117.4 9.4 77 152-230 18-94 (261)
362 3s6e_A RNA-binding protein 39; 99.6 2.2E-14 7.4E-19 99.2 11.1 82 6-88 4-91 (114)
363 1jmt_A Splicing factor U2AF 35 99.6 1.8E-15 6.1E-20 103.2 4.6 74 14-87 20-103 (104)
364 2dnl_A Cytoplasmic polyadenyla 99.6 7.4E-15 2.5E-19 102.0 7.3 58 155-213 7-72 (114)
365 3tht_A Alkylated DNA repair pr 99.6 1.2E-14 4.3E-19 118.6 9.5 76 6-88 15-97 (345)
366 2j8a_A Histone-lysine N-methyl 99.6 5.1E-15 1.7E-19 102.7 5.9 73 157-230 3-94 (136)
367 2d9o_A DNAJ (HSP40) homolog, s 99.5 5.9E-14 2E-18 94.7 10.3 73 155-230 9-88 (100)
368 3ue2_A Poly(U)-binding-splicin 99.5 1.8E-14 6.1E-19 100.3 7.9 75 155-230 19-107 (118)
369 2d9o_A DNAJ (HSP40) homolog, s 99.5 8.6E-14 2.9E-18 93.9 10.4 79 6-92 7-92 (100)
370 3s6e_A RNA-binding protein 39; 99.5 4.5E-14 1.5E-18 97.6 8.9 76 154-230 5-91 (114)
371 3tht_A Alkylated DNA repair pr 99.5 2E-14 6.9E-19 117.4 8.1 78 152-230 14-97 (345)
372 1jmt_A Splicing factor U2AF 35 99.5 6.2E-15 2.1E-19 100.5 2.6 68 161-229 20-103 (104)
373 2dnr_A Synaptojanin-1; RRM dom 99.4 3.5E-12 1.2E-16 82.9 9.7 81 6-92 4-88 (91)
374 2dnr_A Synaptojanin-1; RRM dom 99.4 1.6E-12 5.5E-17 84.5 7.3 74 152-230 3-84 (91)
375 1owx_A Lupus LA protein, SS-B, 99.3 9.8E-12 3.3E-16 86.0 9.8 76 152-229 14-93 (121)
376 1owx_A Lupus LA protein, SS-B, 99.2 8.9E-11 3.1E-15 81.2 10.0 77 5-88 14-94 (121)
377 1ufw_A Synaptojanin 2; RNP dom 99.2 1.8E-11 6.3E-16 79.9 6.0 77 5-87 11-92 (95)
378 1ufw_A Synaptojanin 2; RNP dom 99.2 1.9E-11 6.4E-16 79.9 4.7 75 150-229 9-92 (95)
379 3dxb_A Thioredoxin N-terminall 99.1 6.1E-10 2.1E-14 86.0 9.8 83 6-88 121-211 (222)
380 3dxb_A Thioredoxin N-terminall 98.9 2.1E-09 7.2E-14 83.0 7.7 73 156-229 124-210 (222)
381 2l9w_A U4/U6 snRNA-associated- 98.8 2.5E-08 8.6E-13 66.4 7.9 71 155-227 20-95 (117)
382 2l9w_A U4/U6 snRNA-associated- 98.6 3.8E-07 1.3E-11 60.8 8.7 74 7-87 19-97 (117)
383 1wey_A Calcipressin 1; structu 98.5 4.2E-07 1.5E-11 60.3 7.2 80 7-89 3-83 (104)
384 2dhx_A Poly (ADP-ribose) polym 98.4 5.5E-06 1.9E-10 54.7 11.0 74 4-87 3-81 (104)
385 1wey_A Calcipressin 1; structu 98.3 9.2E-07 3.2E-11 58.7 5.1 72 157-230 6-82 (104)
386 1uw4_A UPF3X; nonsense mediate 97.9 7.1E-05 2.4E-09 48.7 8.3 63 158-220 3-72 (91)
387 1uw4_A UPF3X; nonsense mediate 97.9 8E-05 2.7E-09 48.5 8.3 66 10-79 2-72 (91)
388 1whv_A Poly(A)-specific ribonu 97.8 7.3E-05 2.5E-09 48.8 7.2 58 153-214 13-70 (100)
389 1wwh_A Nucleoporin 35, nucleop 97.8 9.6E-05 3.3E-09 50.4 7.1 76 3-87 18-94 (119)
390 1whv_A Poly(A)-specific ribonu 97.5 0.00029 9.9E-09 46.0 6.5 55 9-73 16-70 (100)
391 1wwh_A Nucleoporin 35, nucleop 97.5 0.00045 1.5E-08 47.0 7.7 70 155-227 23-92 (119)
392 2dhx_A Poly (ADP-ribose) polym 97.5 0.0014 4.7E-08 43.3 9.7 68 155-227 7-79 (104)
393 3ctr_A Poly(A)-specific ribonu 97.4 0.00038 1.3E-08 45.5 5.9 54 157-214 7-60 (101)
394 3ctr_A Poly(A)-specific ribonu 97.4 0.00038 1.3E-08 45.5 5.5 54 10-73 7-60 (101)
395 2l08_A Regulator of nonsense t 97.2 0.00073 2.5E-08 44.3 5.6 68 8-79 8-80 (97)
396 3p3d_A Nucleoporin 53; structu 97.1 0.00057 2E-08 47.2 4.5 73 9-87 7-96 (132)
397 2l08_A Regulator of nonsense t 97.1 0.00067 2.3E-08 44.4 4.6 64 157-220 10-80 (97)
398 3pq1_A Poly(A) RNA polymerase; 96.5 0.0014 4.9E-08 55.3 3.5 56 155-211 52-107 (464)
399 3p3d_A Nucleoporin 53; structu 96.2 0.0038 1.3E-07 43.1 3.3 68 158-228 9-95 (132)
400 3pq1_A Poly(A) RNA polymerase; 96.0 0.0033 1.1E-07 53.2 2.9 55 9-70 53-107 (464)
401 3d45_A Poly(A)-specific ribonu 93.4 0.22 7.7E-06 42.7 7.4 55 9-73 440-494 (507)
402 3d45_A Poly(A)-specific ribonu 91.1 0.67 2.3E-05 39.8 7.5 56 156-215 440-495 (507)
403 4eyt_A Telomerase associated p 80.8 8.4 0.00029 24.4 8.1 59 155-216 11-69 (129)
404 2g0c_A ATP-dependent RNA helic 75.8 8.1 0.00028 23.3 5.5 68 158-231 2-76 (76)
405 1xn9_A 30S ribosomal protein S 63.0 23 0.00078 23.0 5.6 50 19-69 28-81 (101)
406 1ywx_A 30S ribosomal protein S 60.2 27 0.00094 22.7 5.6 48 19-67 28-79 (102)
407 4e8u_A Putative uncharacterize 59.0 24 0.00082 25.4 5.7 56 11-70 14-81 (172)
408 2v94_A RPS24, 30S ribosomal pr 58.2 32 0.0011 22.6 5.7 48 19-67 37-88 (107)
409 4e8u_A Putative uncharacterize 51.6 38 0.0013 24.3 5.7 55 157-211 13-81 (172)
410 3swz_A Steroid 17-alpha-hydrox 44.8 20 0.00067 29.9 3.9 64 11-81 16-79 (494)
411 2xzm_P RPS24E; ribosome, trans 43.4 72 0.0025 22.2 5.9 48 19-67 31-82 (149)
412 3fry_A Probable copper-exporti 38.6 57 0.0019 18.8 5.2 58 157-217 7-64 (73)
413 3u5c_Y RP50, 40S ribosomal pro 38.0 79 0.0027 21.7 5.3 48 19-67 33-84 (135)
414 4eyt_A Telomerase associated p 33.0 92 0.0032 19.6 8.4 75 6-89 9-90 (129)
415 2e5p_A Protein PHF1, PHD finge 33.0 24 0.00082 20.9 1.8 20 37-61 27-46 (68)
416 2m0o_A PHD finger protein 1; t 30.0 28 0.00097 21.2 1.8 21 37-62 44-64 (79)
417 3ts2_A Protein LIN-28 homolog 28.9 15 0.00051 25.7 0.5 24 32-60 6-29 (148)
418 2eqj_A Metal-response element- 28.8 31 0.0011 20.4 1.8 13 49-61 38-50 (66)
419 3uzu_A Ribosomal RNA small sub 28.2 33 0.0011 26.6 2.5 32 10-45 115-146 (279)
420 2e5q_A PHD finger protein 19; 27.2 18 0.0006 21.1 0.5 13 49-61 32-44 (63)
421 3h7h_B Transcription elongatio 25.8 68 0.0023 20.9 3.3 35 182-216 40-74 (106)
422 3fut_A Dimethyladenosine trans 25.1 57 0.002 25.2 3.3 29 10-43 111-139 (271)
423 4hcz_A PHD finger protein 1; p 23.6 46 0.0016 19.1 1.8 19 38-61 22-40 (58)
424 2g1d_A 30S ribosomal protein S 23.2 74 0.0025 20.4 3.0 48 19-67 29-80 (98)
No 1
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=100.00 E-value=4.1e-41 Score=271.50 Aligned_cols=230 Identities=51% Similarity=0.825 Sum_probs=174.4
Q ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 1 ~~~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
|+.++..++++|||+|||.++++++|++.|+++|+.||.|.+|++.+++.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 1 m~~~~~~~~~~l~V~nlp~~~~~~~l~~~L~~~F~~~G~i~~v~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 80 (282)
T 3pgw_A 1 MAVPETRPNHTIYINNLNEKIKKDELKKSLYAIFSQFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDK 80 (282)
T ss_pred CCCCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcCCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCc
Confidence 88899999999999999999999999988999999999999999999999999999999999999999999999999999
Q ss_pred eeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHH-HhcccccCCCCCCCCC--------------------
Q 026902 81 PMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEA-QQSSMANGTGAQSNGG-------------------- 139 (231)
Q Consensus 81 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------------- 139 (231)
.|+|.++..+........+.+...................... ..............+.
T Consensus 81 ~l~v~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 160 (282)
T 3pgw_A 81 PMRIQYAKTDSDIIAKMKGTFVERDRKREKRKPKSQETPATKKAVQGGGATPVVGAVQGPVPGMPPMTQAPRIMHHMPGQ 160 (282)
T ss_pred EEEEEEeccCcchhhhhcCCcccchhhhhhhhccccchhhhhhhccCcCCcccCCCCCCCCCCCCcccccccccccCCCC
Confidence 9999999877665554445444333322211111111111000 0000000000000000
Q ss_pred ---------Ccccccc---------------------cCCCCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEe
Q 026902 140 ---------TAASFRN---------------------ANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMI 189 (231)
Q Consensus 140 ---------~~~~~~~---------------------~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~ 189 (231)
.+.+... .......+++++|||+|||..+++++|+++|++||.|.++.+.
T Consensus 161 ~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~i~~v~~~ 240 (282)
T 3pgw_A 161 PPYMPPPGMIPPPGLAPGQIPPGAMPPQQLMPGQMPPAQPLSENPPNHILFLTNLPEETNELMLSMLFNQFPGFKEVRLV 240 (282)
T ss_pred CCCCCCCCCCCCCCCCccccCcccCcccccCccccCccCCccCCCCCCEEEEeCCCCcCCHHHHHHHHHhcCCeEEEEEe
Confidence 0000000 0112344567899999999999999999999999999999999
Q ss_pred eCCCcEEEEEecCHHHHHHHHHHhcCCccC-CCCCeEEEeccC
Q 026902 190 EAKPGIAFVEFEDDVQSSMAMQALQGFKIT-PQNPMAITFAKK 231 (231)
Q Consensus 190 ~~~~g~afV~f~~~~~A~~A~~~lng~~i~-~~~~l~V~~a~~ 231 (231)
++++|+|||+|.+.++|.+|+..|||+.|+ + ++|+|+||||
T Consensus 241 ~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g-~~l~v~~akk 282 (282)
T 3pgw_A 241 PGRHDIAFVEFDNEVQAGAARDALQGFKITQN-NAMKISFAKK 282 (282)
T ss_pred cCCCcEEEEEeCCHHHHHHHHHHcCCcEeCCC-CEEEEEEecC
Confidence 988899999999999999999999999999 6 9999999997
No 2
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=100.00 E-value=7.9e-38 Score=242.51 Aligned_cols=162 Identities=21% Similarity=0.330 Sum_probs=145.0
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..+.++|||+|||.++|+++|+ ++|++||+|.+|++++ ++.++|||||+|.+.++|.+|+..+|+..+.|+.+
T Consensus 12 ~~p~~tlfVgnLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i 87 (213)
T 4f02_A 12 SYPMASLYVGDLHPDVTEAMLY----EKFSPAGPILSIRVCRDMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPV 87 (213)
T ss_dssp ---CCEEEEESCCTTCCHHHHH----HHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHHHhhCCEEEEEEecccCCCCccccccceeCCHHHHHHHHHHhhhhhcCCccc
Confidence 3567899999999999999999 9999999999999987 58899999999999999999999999999999999
Q ss_pred EEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEec
Q 026902 83 RIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQ 162 (231)
Q Consensus 83 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~ 162 (231)
++.++........ ....+|||+
T Consensus 88 ~~~~~~~~~~~~~----------------------------------------------------------~~~~~l~v~ 109 (213)
T 4f02_A 88 RIMWSQRDPSLRK----------------------------------------------------------SGVGNIFIK 109 (213)
T ss_dssp EEEECCCCTHHHH----------------------------------------------------------HCTTEEEEE
T ss_pred ccccccccccccc----------------------------------------------------------cccccceEC
Confidence 9998754332111 134579999
Q ss_pred CCCCCCCHHHHHHHhccCCCeeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 163 NLPHETTSSMLEMLFQQYPGFKEVRMIEA---KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 163 nlp~~~t~~~l~~~f~~~g~v~~v~~~~~---~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
|||..+++++|+++|++||.|..+.++++ ++|||||+|.+.++|.+|+..|||..|+| ++|+|.||+
T Consensus 110 nl~~~~t~~~l~~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g-~~i~V~~a~ 179 (213)
T 4f02_A 110 NLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND-RKVFVGRFK 179 (213)
T ss_dssp SCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred CcccccHHHHHHHHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECC-EEEEEEEcC
Confidence 99999999999999999999999999875 36899999999999999999999999999 999999986
No 3
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.4e-37 Score=228.72 Aligned_cols=159 Identities=21% Similarity=0.372 Sum_probs=144.5
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYA 87 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~ 87 (231)
|+|||+|||.++|+++|+ ++|+.||+|.+|.+++ ++.++|||||+|.+.++|.+|+..+||..+.|++|.|.++
T Consensus 1 R~l~V~nlp~~~t~~~l~----~~f~~~G~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~ 76 (166)
T 3md3_A 1 RVLYVGNLDKAITEDILK----QYFQVGGPIANIKIMIDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWA 76 (166)
T ss_dssp CEEEEEEEETTCCHHHHH----HHHGGGSCEEEEEEECCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEC
T ss_pred CEEEECCCCCcCCHHHHH----HHHHhcCCeEEEEEEECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEc
Confidence 689999999999999999 9999999999999987 5778999999999999999999999999999999999997
Q ss_pred cCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCCC
Q 026902 88 KSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHE 167 (231)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~ 167 (231)
..... ....+..+|||+|||..
T Consensus 77 ~~~~~----------------------------------------------------------~~~~~~~~l~v~nl~~~ 98 (166)
T 3md3_A 77 FQSQQ----------------------------------------------------------SSSDDTFNLFVGDLNVN 98 (166)
T ss_dssp CCCCC----------------------------------------------------------CCCTTCEEEEEESCCTT
T ss_pred CCCCC----------------------------------------------------------CCCCCCceEEECCCCCC
Confidence 54322 12235678999999999
Q ss_pred CCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 168 TTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 168 ~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
+++++|.++|++||.|..+.+..+. +|+|||+|.+.++|.+|+..|||..++| ++|+|.||+|
T Consensus 99 ~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~i~v~~a~~ 166 (166)
T 3md3_A 99 VDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG-RPLRINWAAK 166 (166)
T ss_dssp CCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT-EECEEEESCC
T ss_pred CCHHHHHHHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCC-cEEEEEecCC
Confidence 9999999999999999999998762 5899999999999999999999999998 9999999986
No 4
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=100.00 E-value=3.1e-36 Score=224.36 Aligned_cols=157 Identities=24% Similarity=0.492 Sum_probs=143.1
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
++++|||+|||..+++++|+ ++|+.||+|.++.+++ ++.++|||||+|.+.++|.+|+..|||..+.|++|+|
T Consensus 1 s~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~v~~~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 76 (167)
T 1fxl_A 1 SKTNLIVNYLPQNMTQEEFR----SLFGSIGEIESCKLVRDKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKV 76 (167)
T ss_dssp CCSEEEEESCCTTCCHHHHH----HHHHTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CcceEEEcCCCCCCCHHHHH----HHHHhcCCeEEEEEEeCCCCCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEE
Confidence 47899999999999999999 9999999999999987 6788999999999999999999999999999999999
Q ss_pred EeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCC
Q 026902 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 164 (231)
.++.+... .....+|||+||
T Consensus 77 ~~~~~~~~------------------------------------------------------------~~~~~~l~v~nl 96 (167)
T 1fxl_A 77 SYARPSSA------------------------------------------------------------SIRDANLYVSGL 96 (167)
T ss_dssp EECCCCCG------------------------------------------------------------GGTTCEEEEESC
T ss_pred EecCCCcc------------------------------------------------------------cCCCCcEEECCC
Confidence 99864322 124567999999
Q ss_pred CCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCC--CeEEEec
Q 026902 165 PHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQN--PMAITFA 229 (231)
Q Consensus 165 p~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~--~l~V~~a 229 (231)
|..+++++|+++|++||.|..+.+..++ +|+|||+|.+.++|.+|+..|||..++| + +|+|.||
T Consensus 97 ~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~~~i~v~~A 167 (167)
T 1fxl_A 97 PKTMTQKELEQLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSG-ATEPITVKFA 167 (167)
T ss_dssp CTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTT-CSSCCEEEEC
T ss_pred CCcCCHHHHHHHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCC-CccceEEEeC
Confidence 9999999999999999999999998864 6899999999999999999999999998 6 4999987
No 5
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=100.00 E-value=4.1e-36 Score=224.08 Aligned_cols=158 Identities=22% Similarity=0.444 Sum_probs=144.1
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
++++|||+|||.++++++|+ ++|+.||+|.+|.+++ ++.++|||||+|.+.++|.+|+..|+|..+.|++|.|
T Consensus 2 ~~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v 77 (168)
T 1b7f_A 2 SNTNLIVNYLPQDMTDRELY----ALFRAIGPINTCRIMRDYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKV 77 (168)
T ss_dssp CCSEEEEECCCTTCCHHHHH----HHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CccEEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEEeCCCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEE
Confidence 67999999999999999999 9999999999999886 5779999999999999999999999999999999999
Q ss_pred EeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCC
Q 026902 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 164 (231)
.++.+... ....++|||+||
T Consensus 78 ~~~~~~~~------------------------------------------------------------~~~~~~l~v~nl 97 (168)
T 1b7f_A 78 SYARPGGE------------------------------------------------------------SIKDTNLYVTNL 97 (168)
T ss_dssp EECCCCSS------------------------------------------------------------TTTTCEEEEESC
T ss_pred EecCCCcc------------------------------------------------------------cCCCCCEEEeCC
Confidence 99863321 235678999999
Q ss_pred CCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCC-CCCeEEEec
Q 026902 165 PHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITP-QNPMAITFA 229 (231)
Q Consensus 165 p~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~-~~~l~V~~a 229 (231)
|..+++++|+++|++||.|..+.+++++ +|+|||+|.+.++|.+|+..|||..+++ +++|+|.||
T Consensus 98 ~~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~l~V~~A 168 (168)
T 1b7f_A 98 PRTITDDQLDTIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 168 (168)
T ss_dssp CTTCCHHHHHHHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSCCEEEEC
T ss_pred CCCCCHHHHHHhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCeEEEEEeC
Confidence 9999999999999999999999998864 5899999999999999999999999954 399999997
No 6
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=100.00 E-value=2.1e-35 Score=231.33 Aligned_cols=194 Identities=20% Similarity=0.289 Sum_probs=151.2
Q ss_pred CCCCCEEEEeCCCC-ccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 6 IPPNQTIYIKNLNE-KIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 6 ~~~~~~v~v~nLp~-~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
.+++++|||+|||. ++++++|+ ++|+.||.|.+|++.++. +|||||+|.+.++|.+|+..|||..+.|+.|.|
T Consensus 31 ~~~~~~l~V~nLp~~~~te~~L~----~~F~~~G~i~~v~i~~~~--~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v 104 (229)
T 2adc_A 31 GAGNSVLLVSNLNPERVTPQSLF----ILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRI 104 (229)
T ss_dssp CCCCSEEEEESCCTTTCCHHHHH----HHHHHHTCEEEEEECCTT--SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHH----HHHHhCCCeEEEEEEECC--CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 46789999999999 99999999 999999999999998764 899999999999999999999999999999999
Q ss_pred EeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCC
Q 026902 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 164 (231)
.++..+.....+.........+ ........... ...........+++++|||+||
T Consensus 105 ~~a~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~~~~-~~~~~~~~~~~~~~~~l~V~nl 159 (229)
T 2adc_A 105 TLSKHQNVQLPREGQEDQGLTK------------------------DYGNSPLHRFK-KPGSKNFQNIFPPSATLHLSNI 159 (229)
T ss_dssp ECCSCCCCCCCCSSSSTTTTEE------------------------ECTTCSSCCCC-STTSGGGTTCCCSCSEEEEECC
T ss_pred EEecCccccCcccccccccccc------------------------ccccCcccccC-CccccccccCCCCCCEEEEeCC
Confidence 9987654322111110000000 00000000000 0000011123456789999999
Q ss_pred CCCCCHHHHHHHhccCC-CeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccC-CCCCeEEEeccC
Q 026902 165 PHETTSSMLEMLFQQYP-GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIT-PQNPMAITFAKK 231 (231)
Q Consensus 165 p~~~t~~~l~~~f~~~g-~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~-~~~~l~V~~a~~ 231 (231)
|..+++++|+++|++|| .|..+.+.+.++|+|||+|.+.++|.+|+..|||..++ + ++|+|.||+.
T Consensus 160 p~~~t~~~l~~~f~~~G~~i~~v~i~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~~g-~~l~v~~a~~ 227 (229)
T 2adc_A 160 PPSVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGEN-HHLRVSFSKS 227 (229)
T ss_dssp CTTCCHHHHHHHHHTTSCCEEEEEECSSSTTCEEEEESSHHHHHHHHHHHTTCBSSSS-CBCEEEECSS
T ss_pred CccCCHHHHHHHHHHcCCCeeEEEEEECCCcEEEEEECCHHHHHHHHHHHCCCccCCC-CeEEEEEecC
Confidence 99999999999999999 99999998777799999999999999999999999999 6 9999999974
No 7
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=100.00 E-value=1.8e-35 Score=221.93 Aligned_cols=160 Identities=23% Similarity=0.470 Sum_probs=140.6
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC---C--CccceEEEEEcCHHHHHHHHHHhCCceeC---C
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT---P--KLRGQAWVVFSEVTAASNAVRQMQNFPFY---D 79 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~---~--~~~g~afV~f~~~e~A~~a~~~l~g~~~~---g 79 (231)
++++|||+|||.++|+++|+ ++|+.||+|.+|+++++ + .++|||||+|.+.++|.+|++.|+|..+. +
T Consensus 2 ~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~ 77 (175)
T 3nmr_A 2 DAIKMFVGQVPRTWSEKDLR----ELFEQYGAVYEINVLRDRSQNPPQSKGCCFVTFYTRKAALEAQNALHNMKVLPGMH 77 (175)
T ss_dssp CCEEEEEESCCTTCCHHHHH----HHHHTTSCEEEEEEEEECSSSSCEEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCS
T ss_pred CceEEEEeCCCCCCCHHHHH----HHHHhCCCEEEEEEEecCCCCCCCcceEEEEEECCHHHHHHHHHHhcCcEEccCCc
Confidence 57899999999999999999 99999999999999872 3 78999999999999999999999998776 5
Q ss_pred eeeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEE
Q 026902 80 KPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNIL 159 (231)
Q Consensus 80 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 159 (231)
+++.+.++..... .....++|
T Consensus 78 ~~~~~~~~~~~~~-----------------------------------------------------------~~~~~~~l 98 (175)
T 3nmr_A 78 HPIQMKPADSEKN-----------------------------------------------------------NAVEDRKL 98 (175)
T ss_dssp SCCEEEECGGGCC-----------------------------------------------------------SCGGGSEE
T ss_pred cceEEcccccccc-----------------------------------------------------------ccCCCCeE
Confidence 7778777643221 11245679
Q ss_pred EecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCC--CCeEEEecc
Q 026902 160 FIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQ--NPMAITFAK 230 (231)
Q Consensus 160 ~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~--~~l~V~~a~ 230 (231)
||+|||..+++++|+++|++||.|.++.+++++ +|+|||+|.+.++|.+|+..|||..+.+| ++|+|.||.
T Consensus 99 ~v~nl~~~~t~~~l~~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~l~V~~ad 175 (175)
T 3nmr_A 99 FIGMISKKCTENDIRVMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSPMVVKFAD 175 (175)
T ss_dssp EEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSCCEEEECC
T ss_pred EEcCCCCcCCHHHHHHHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCCeEEEecC
Confidence 999999999999999999999999999999863 58999999999999999999999988753 999999983
No 8
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=100.00 E-value=1.8e-35 Score=226.08 Aligned_cols=166 Identities=19% Similarity=0.325 Sum_probs=143.1
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
.+..+.++|||+|||.++|+++|+ ++|+.||.|.+|.+++ ++.++|||||+|.+.++|.+|+.. ++..+.|+
T Consensus 8 ~~~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~ 82 (196)
T 1l3k_A 8 KEPEQLRKLFIGGLSFETTDESLR----SHFEQWGTLTDCVVMRDPNTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGR 82 (196)
T ss_dssp CCCGGGGEEEEESCCTTCCHHHHH----HHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHHhCCCEEEEEEEEcCCCCCccceEEEEeCCHHHHHHHHhc-CCCEECCE
Confidence 344568999999999999999999 9999999999999987 578999999999999999999984 99999999
Q ss_pred eeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEE
Q 026902 81 PMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILF 160 (231)
Q Consensus 81 ~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 160 (231)
.|.|.++........ .......++||
T Consensus 83 ~l~v~~~~~~~~~~~------------------------------------------------------~~~~~~~~~l~ 108 (196)
T 1l3k_A 83 VVEPKRAVSREDSQR------------------------------------------------------PGAHLTVKKIF 108 (196)
T ss_dssp ECEEEECCC-----------------------------------------------------------------CCSEEE
T ss_pred EeeeecccCcccccc------------------------------------------------------cccCCCcceEE
Confidence 999999864332110 01223567899
Q ss_pred ecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 161 IQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 161 v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
|+|||..+++++|+++|++||.|..+.++.++ +|+|||+|.+.++|.+|+.. +|..++| +.|.|.||.
T Consensus 109 V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G-~~i~v~~a~ 181 (196)
T 1l3k_A 109 VGGIKEDTEEHHLRDYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNG-HNCEVRKAL 181 (196)
T ss_dssp EECCTTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETT-EECEEEECC
T ss_pred EeCCCCCCCHHHHHHHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECC-EEEEEEecC
Confidence 99999999999999999999999999999863 68999999999999999986 8999999 999999985
No 9
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=100.00 E-value=1.7e-35 Score=229.42 Aligned_cols=169 Identities=16% Similarity=0.279 Sum_probs=144.7
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
+.++|||+|||.++|+++|+ ++|+.||.|.+|++++ ++.++|||||+|.+.++|.+|+..|||..+.|+.|.|
T Consensus 27 ~~~~l~V~nLp~~~t~~~l~----~~f~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v 102 (216)
T 2qfj_A 27 IMSRVYVGSIYYELGEDTIR----QAFAPFGPIKSIDMSWDSVTMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKV 102 (216)
T ss_dssp HHTEEEEECCCTTCCHHHHH----HHHGGGSCEEEEEECCC-CC-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEE
T ss_pred cCCEEEEECCCCCCCHHHHH----HHHHhCCCEEEEEEeecCCCCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEE
Confidence 46899999999999999999 9999999999999987 5789999999999999999999999999999999999
Q ss_pred EeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCC
Q 026902 85 QYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNL 164 (231)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nl 164 (231)
.++........ ...... ......++|||+||
T Consensus 103 ~~~~~~~~~~~--------------~~~~~~-----------------------------------~~~~~~~~l~v~nl 133 (216)
T 2qfj_A 103 GRPSNIGQAQP--------------IIDQLA-----------------------------------EEARAFNRIYVASV 133 (216)
T ss_dssp ECCSCCGGGHH--------------HHHHHH-----------------------------------HHHTTSCEEEEECC
T ss_pred ecCCCccccch--------------hhhhhh-----------------------------------cccCCCcEEEEeCC
Confidence 88754432110 000000 01125678999999
Q ss_pred CCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 165 PHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 165 p~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
|..+++++|+++|++||.|..+.+.++. +|+|||+|.+.++|.+|+..|||..|++ ++|+|.||+
T Consensus 134 p~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g-~~i~V~~a~ 203 (216)
T 2qfj_A 134 HQDLSDDDIKSVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGG-QYLRVGKAV 203 (216)
T ss_dssp CTTCCHHHHHHHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSS-SBCEEEECS
T ss_pred CCcCCHHHHHHHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCC-cEEEEEEec
Confidence 9999999999999999999999999863 6899999999999999999999999999 999999986
No 10
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=100.00 E-value=3.1e-35 Score=225.27 Aligned_cols=193 Identities=20% Similarity=0.299 Sum_probs=149.9
Q ss_pred CCCEEEEeCCCC-ccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 8 PNQTIYIKNLNE-KIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 8 ~~~~v~v~nLp~-~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
.+++|||+|||. .+++++|+ ++|+.||.|.+|++.++. +|||||+|.+.++|.+|+..|||..+.|++|.|.+
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~----~~F~~~G~i~~v~i~~~~--~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~ 75 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLF----ILFGVYGDVQRVKILFNK--KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITL 75 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHH----HHHHTTCCCSEEECSTTC--SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEE
T ss_pred CCcEEEEeCCCcccCCHHHHH----HHHHhcCCEEEEEEEeCC--CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEE
Confidence 578999999999 99999999 999999999999997754 89999999999999999999999999999999999
Q ss_pred ccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCC
Q 026902 87 AKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH 166 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~ 166 (231)
+........+.........+ .......... ............+++++|||+|||.
T Consensus 76 a~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~r~-~~~~~~~~~~~~~~~~~l~v~nl~~ 130 (198)
T 1qm9_A 76 SKHQNVQLPREGQEDQGLTK------------------------DYGNSPLHRF-KKPGSKNFQNIFPPSATLHLSNIPP 130 (198)
T ss_dssp CCCCSCCCSSSSSSSSSCEE------------------------ESSCCCTTSS-SSCCCCCCSCCCCCCCEEEECCCCT
T ss_pred ecCCCcCCCCcCCccccccc------------------------cccCCchhhc-cCccccccccCCCCccEEEEeCCCC
Confidence 87654322111100000000 0000000000 0000001112345688999999999
Q ss_pred CCCHHHHHHHhccCC-CeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 167 ETTSSMLEMLFQQYP-GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 167 ~~t~~~l~~~f~~~g-~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
.+++++|+++|++|| .|..+.+.++++|+|||+|.+.++|.+|+..|||..+++|++|+|.||+.
T Consensus 131 ~~~~~~l~~~f~~~G~~v~~v~i~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~ 196 (198)
T 1qm9_A 131 SVSEEDLKVLFSSNGGVVKGFKFFQKDRKMALIQMGSVEEAVQALIDLHNHDLGENHHLRVSFSKS 196 (198)
T ss_dssp TCCHHHHHHHHHHTTSCCCEEEESSTTSSCEEEECSSHHHHHHHHHHHTSSCCSSCCSCCEEEECC
T ss_pred CCCHHHHHHHHHHcCCCceEEEEEeCCCcEEEEEeCCHHHHHHHHHHhcCCccCCCCeEEEEeecc
Confidence 999999999999999 99999998877899999999999999999999999999339999999974
No 11
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=100.00 E-value=5e-35 Score=225.05 Aligned_cols=191 Identities=15% Similarity=0.258 Sum_probs=144.1
Q ss_pred CCCCEEEEeCCC-CccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 7 PPNQTIYIKNLN-EKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 7 ~~~~~v~v~nLp-~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
+++++|||+||| ..+|+++|+ ++|+.||.|.+|+++++ ++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~----~~F~~~G~v~~v~i~~~--~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~ 75 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVF----NVFCLYGNVEKVKFMKS--KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVC 75 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHH----HHHTTTSCEEEEEECTT--STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEEeCCCcccCCHHHHH----HHHHhcCCeEEEEEecC--CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEE
Confidence 468999999999 899999999 99999999999999764 58999999999999999999999999999999999
Q ss_pred eccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccc---cCCCCCCCCCCEEEec
Q 026902 86 YAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRN---ANTQETAAPNNILFIQ 162 (231)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~l~v~ 162 (231)
+++.+... .+.... .+.. .+. ..+. .+........ .......+++++|||+
T Consensus 76 ~s~~~~~~-p~~~~~-~~~~-------------------~~~-~~~~----~~~~~~r~~~~~~~~~~~~~~p~~~l~v~ 129 (205)
T 3tyt_A 76 VSKQPAIM-PGQSYG-LEDG-------------------SCS-YKDF----SESRNNRFSTPEQAAKNRIQHPSNVLHFF 129 (205)
T ss_dssp ECSCSCCC-CCSCCB-CTTS-------------------CBS-EEEC----TTCTTCSCSSHHHHTTSCCCCCCSEEEEE
T ss_pred EccCCccC-CCcccc-cccC-------------------Ccc-cccc----CCCccccccCcccccccccCCCcceEEEe
Confidence 98654321 000000 0000 000 0000 0000000000 0011123567899999
Q ss_pred CCCCCCCHHHHHHHhccCCCe--eEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCccCCC---CCeEEEec
Q 026902 163 NLPHETTSSMLEMLFQQYPGF--KEVRMIEA---KPGIAFVEFEDDVQSSMAMQALQGFKITPQ---NPMAITFA 229 (231)
Q Consensus 163 nlp~~~t~~~l~~~f~~~g~v--~~v~~~~~---~~g~afV~f~~~~~A~~A~~~lng~~i~~~---~~l~V~~a 229 (231)
|||..+|+++|+++|++||.| .++.++++ ++|+|||+|.+.++|.+|+..|||..|.+. .++.|.||
T Consensus 130 NLp~~~t~~~L~~~F~~~G~v~~~~v~~~~~~~~~~g~gfV~f~~~~~A~~Ai~~lng~~~~g~~~~~p~~vk~~ 204 (205)
T 3tyt_A 130 NAPLEVTEENFFEICDELGVKRPTSVKVFSGKSERSSSGLLEWDSKSDALETLGFLNHYQMKNPNGPYPYTLKLC 204 (205)
T ss_dssp EECTTCCHHHHHHHHHHHTCCCCSEEEECSCCSSSSEEEEEECSSHHHHHHHHHHHTTCEECCSSSSSCEECEEE
T ss_pred CCCCCCCHHHHHHHHHhcCCcceEEEEEEcCCCCCceEEEEEeCCHHHHHHHHHHhCCCCccCCCCCcceEEEec
Confidence 999999999999999999999 89998875 358999999999999999999999999871 47888775
No 12
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=100.00 E-value=4.2e-35 Score=219.51 Aligned_cols=154 Identities=19% Similarity=0.355 Sum_probs=139.1
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccC----C-------CeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCc
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQY----G-------RIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNF 75 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~----g-------~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~ 75 (231)
+++++|||+|||.++|+++|+ ++|+.| | .|.++.+ +.++|||||+|.+.++|.+|+ .+||.
T Consensus 2 r~~~~l~V~nLp~~~t~~~l~----~~F~~~g~~~g~~~~~~~~v~~~~~---~~~~g~afV~f~~~~~A~~A~-~~~~~ 73 (172)
T 2g4b_A 2 GSARRLYVGNIPFGITEEAMM----DFFNAQMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-AFDGI 73 (172)
T ss_dssp CGGGEEEEESCCTTCCHHHHH----HHHHHHHHHTTCCSSSSCSEEEEEE---ETTTTEEEEEESSHHHHHHHG-GGTTC
T ss_pred CcccEEEEcCCCcccCHHHHH----HHHHHHhhhcccccCCCCceeeeEe---cCCCCEEEEEeCCHHHHHHHH-HhCCc
Confidence 468999999999999999999 999999 6 7787777 667999999999999999999 79999
Q ss_pred eeCCeeeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCC
Q 026902 76 PFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAP 155 (231)
Q Consensus 76 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (231)
.+.|++|.|.++.... ....
T Consensus 74 ~~~g~~i~v~~~~~~~------------------------------------------------------------~~~~ 93 (172)
T 2g4b_A 74 IFQGQSLKIRRPHDYQ------------------------------------------------------------PLPG 93 (172)
T ss_dssp EETTEECEEECCSSCC------------------------------------------------------------CCTT
T ss_pred EecCceeeecCCcccC------------------------------------------------------------CCCC
Confidence 9999999998864221 1123
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
.++|||+|||..+++++|+++|++||.|..+.+.+++ +|+|||+|.+.++|.+|+..|||..++| ++|.|+||
T Consensus 94 ~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~A 171 (172)
T 2g4b_A 94 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD-KKLLVQRA 171 (172)
T ss_dssp TTCEEEECCCTTCCHHHHHHHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETT-EECEEEEC
T ss_pred CCEEEEEcCCCcCCHHHHHHHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECC-eEEEEEeC
Confidence 5779999999999999999999999999999999874 6899999999999999999999999999 99999998
No 13
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=100.00 E-value=1.6e-34 Score=221.11 Aligned_cols=175 Identities=17% Similarity=0.296 Sum_probs=142.8
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccC----C-------CeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCc
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQY----G-------RIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNF 75 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~----g-------~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~ 75 (231)
+.+++|||+|||.++|+++|+ ++|+.| | .|..+.+ +.++|||||+|.+.++|.+|+ .|||.
T Consensus 2 ~~~~~l~V~nLp~~~te~~l~----~~F~~~g~i~g~~~~~~~~v~~~~~---~~~~g~afV~F~~~~~A~~Al-~l~g~ 73 (198)
T 2yh0_A 2 AMARRLYVGNIPFGITEEAMM----DFFNAQMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-AFDGI 73 (198)
T ss_dssp --CCEEEEESCCTTCCHHHHH----HHHHHHHHHHTCCSSSSCSEEEEEE---ETTTTEEEEEESCSHHHHHHG-GGTTE
T ss_pred CceeEEEEcCCCCCCCHHHHH----HHHHHHHhhcccccCCCCceEEeEe---cCCCCEEEEEeCCHHHHHHHH-HhcCC
Confidence 468999999999999999999 999999 5 6777766 778999999999999999999 79999
Q ss_pred eeCCeeeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCC
Q 026902 76 PFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAP 155 (231)
Q Consensus 76 ~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (231)
.+.|++|+|.++............. ....+ .........+
T Consensus 74 ~~~g~~i~v~~~~~~~~~~~~~~~~----------------------------------~~~~~------~~~~~~~~~~ 113 (198)
T 2yh0_A 74 IFQGQSLKIRRPHDYQPLPGMSENP----------------------------------SVYVP------GVVSTVVPDS 113 (198)
T ss_dssp EETTEEEEEECCCCCCCCCCSSSCS----------------------------------SCCCT------TSSCCCSSCC
T ss_pred EEcCceEEEeCCCCCCCCCCCcCCC----------------------------------cCCCC------CCccCCCCCC
Confidence 9999999999886543211100000 00000 0011223356
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.++|||+|||..+++++|+++|++||.|..+.+.+++ +|+|||+|.+.++|.+|+..|||..|+| ++|+|.||+
T Consensus 114 ~~~l~v~nl~~~~~~~~l~~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~ 192 (198)
T 2yh0_A 114 AHKLFIGGLPNYLNDDQVKELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGD-KKLLVQRAS 192 (198)
T ss_dssp CCEEEEECCCTTCCHHHHHHHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETT-EECEEEESC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEECC
Confidence 7889999999999999999999999999999999874 6899999999999999999999999998 999999986
No 14
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=100.00 E-value=6.9e-35 Score=217.30 Aligned_cols=156 Identities=17% Similarity=0.321 Sum_probs=139.7
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
+++++|||+|||.++|+++|+ ++|+.||.|.+|++++ ++.++|||||+|.+.++|.+|+. ++..+.|+.|.
T Consensus 1 k~~~~l~v~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~i~ 74 (167)
T 2cjk_A 1 KESCKMFIGGLNWDTTEDNLR----EYFGKYGTVTDLKIMKDPATGRSRGFGFLSFEKPSSVDEVVK--TQHILDGKVID 74 (167)
T ss_dssp CGGGEEEECSCCTTCCHHHHH----HHHTTTCCEEEEECCCCTTTSSCCSCEEEEESSTHHHHHHHH--SCCEETTEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHH----HHHHhCCCEEEEEEEECCCCCCccceEEEEEccHHHHHHHHh--cccccCCeEcc
Confidence 367999999999999999999 9999999999999987 58899999999999999999998 46789999999
Q ss_pred EEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecC
Q 026902 84 IQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQN 163 (231)
Q Consensus 84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 163 (231)
+.++.++... .+.++|||+|
T Consensus 75 v~~~~~~~~~------------------------------------------------------------~~~~~l~V~n 94 (167)
T 2cjk_A 75 PKRAIPRDEQ------------------------------------------------------------DKTGKIFVGG 94 (167)
T ss_dssp CEECCCHHHH------------------------------------------------------------HHCEEEEEEE
T ss_pred cccccchhhc------------------------------------------------------------cCCCeEEECC
Confidence 9887532210 1345799999
Q ss_pred CCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 164 LPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 164 lp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
||..+++++|.++|++||.|.++.+..++ +|+|||+|.+.++|.+|+. +||..++| ++|+|.||+
T Consensus 95 lp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-~~i~V~~a~ 164 (167)
T 2cjk_A 95 IGPDVRPKEFEEFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKD-RKIEIKRAE 164 (167)
T ss_dssp ECTTCCHHHHHHHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSS-SCEEEEECC
T ss_pred CCCCCCHHHHHHHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCC-eEEEEeecC
Confidence 99999999999999999999999998753 6899999999999999998 89999999 999999986
No 15
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=100.00 E-value=4.5e-35 Score=220.07 Aligned_cols=162 Identities=19% Similarity=0.324 Sum_probs=136.9
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEE--ecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVA--LKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~--~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
.+..+.++|||+|||..+|+++|+ ++|+.||.+..+.+ ..++.++|||||+|.+.++|.+|++ |||..+.|++
T Consensus 8 ~~~~~~~~l~V~nLp~~~t~~~l~----~~f~~~g~~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~ 82 (175)
T 1fje_B 8 SESTTPFNLFIGNLNPNKSVAELK----VAISELFAKNDLAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNE 82 (175)
T ss_dssp SSCSSSEEEEEECCCTTSCHHHHH----HHHHHHHHHHTCCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGEEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHH----HHHHHhCCcceEEEEECCCCccccEEEEEECCHHHHHHHHh-cCCCEeCCeE
Confidence 356789999999999999999999 77777665544212 2268899999999999999999995 9999999999
Q ss_pred eEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEe
Q 026902 82 MRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFI 161 (231)
Q Consensus 82 l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v 161 (231)
|.|.++.++... ...+.++|||
T Consensus 83 l~v~~~~~~~~~----------------------------------------------------------~~~~~~~l~v 104 (175)
T 1fje_B 83 IKLEKPKGRDSK----------------------------------------------------------KVRAARTLLA 104 (175)
T ss_dssp EEEECCCCSSCS----------------------------------------------------------TTGGGGEEEE
T ss_pred EEEecCCCcccc----------------------------------------------------------ccccCCEEEE
Confidence 999998654321 1125578999
Q ss_pred cCCCCCCCHHHHHHHhccCCCeeEEEEee-CCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 162 QNLPHETTSSMLEMLFQQYPGFKEVRMIE-AKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 162 ~nlp~~~t~~~l~~~f~~~g~v~~v~~~~-~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
+|||..+++++|+++|++||.|..+ ... .++|+|||+|.+.++|.+|+..|||..|+| ++|+|.||+
T Consensus 105 ~nlp~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~i~v~~a~ 172 (175)
T 1fje_B 105 KNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG-RSVSLYYTG 172 (175)
T ss_dssp ESCCSSCCHHHHHHHCTTCSEEEEE-CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETT-EEEEEEECS
T ss_pred eCCCCCCCHHHHHHHHHhcCeEEEe-cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEecC
Confidence 9999999999999999999999877 211 247999999999999999999999999999 999999986
No 16
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=4.5e-33 Score=224.66 Aligned_cols=163 Identities=13% Similarity=0.242 Sum_probs=146.6
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
++.++|||+|||..+++++|+ ++|+.||.|..+.++. +|.++|||||+|.+.++|.+|+..|+|..+.|++|.
T Consensus 93 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~ 168 (284)
T 3smz_A 93 PTDALLCVANLPPSLTQQQFE----ELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLY 168 (284)
T ss_dssp CCSCEEEEESCCTTCCHHHHH----HHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEcCCCCcCCHHHHH----HHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 467899999999999999999 9999999999998886 688999999999999999999999999999999999
Q ss_pred EEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecC
Q 026902 84 IQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQN 163 (231)
Q Consensus 84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 163 (231)
|.++.++... ......++|||+|
T Consensus 169 v~~a~~~~~~---------------------------------------------------------~~~~~~~~l~v~n 191 (284)
T 3smz_A 169 VHWTDAGQLT---------------------------------------------------------PALLHSRCLCVDR 191 (284)
T ss_dssp EEECCGGGCC---------------------------------------------------------TTTTSCSEEEEEC
T ss_pred EEECCCCCCC---------------------------------------------------------cccCCccEEEEec
Confidence 9998643221 1223567899999
Q ss_pred CCCCC-CHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 164 LPHET-TSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 164 lp~~~-t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
||..+ ++++|+++|++||.|.++.+.++ ++|+|||+|.+.++|.+|+..|||..++| ++|+|.||+.
T Consensus 192 lp~~~~~~~~l~~~f~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a~~ 263 (284)
T 3smz_A 192 LPPGFNDVDALCRALSAVHSPTFCQLACGQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGG-SHLRVSFCAP 263 (284)
T ss_dssp CCTTCCCHHHHHHHTCSSSCCSEEEEEECSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETT-EECEEEECCS
T ss_pred CCcccCCHHHHHHHhhCCCCeEEEEEEECCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCC-eEEEEEEecC
Confidence 99995 99999999999999999999886 36899999999999999999999999998 9999999863
No 17
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=100.00 E-value=1.6e-32 Score=219.00 Aligned_cols=150 Identities=23% Similarity=0.395 Sum_probs=136.5
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
.+.++|||+|||.++|+++|+ ++|+.||.|..|.+ ++++|||||+|.+.++|.+|+..+||..+.|+.|.|.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i---~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~ 92 (261)
T 3sde_A 20 TQRCRLFVGNLPTDITEEDFK----RLFERYGEPSEVFI---NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRF 92 (261)
T ss_dssp CGGGEEEEESCCTTCCHHHHH----HHTGGGCCCSEEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEECCCCCCCHHHHH----HHHHhcCCEEEEEE---eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeee
Confidence 456899999999999999999 99999999999999 55689999999999999999999999999999999998
Q ss_pred ccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCC
Q 026902 87 AKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH 166 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~ 166 (231)
+. ++.+|||+|||.
T Consensus 93 a~------------------------------------------------------------------~~~~l~v~nl~~ 106 (261)
T 3sde_A 93 AT------------------------------------------------------------------HGAALTVKNLSP 106 (261)
T ss_dssp CC------------------------------------------------------------------CSSEEEEESCCT
T ss_pred cc------------------------------------------------------------------cCCcccccCCCC
Confidence 74 345799999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcC-CccC---CCCCeEEEecc
Q 026902 167 ETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQG-FKIT---PQNPMAITFAK 230 (231)
Q Consensus 167 ~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng-~~i~---~~~~l~V~~a~ 230 (231)
.+|+++|.++|++||.|..+.++++ ++|+|||+|.+.++|.+|+..||+ ..+. + ++|.|.+++
T Consensus 107 ~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~-r~i~v~~~~ 177 (261)
T 3sde_A 107 VVSNELLEQAFSQFGPVEKAVVVVDDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTP-RPVIVEPME 177 (261)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEEETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSC-CBCEEEECC
T ss_pred CCCHHHHHHHHHhcCCeEEEEeeeCCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCC-ceEEEeecc
Confidence 9999999999999999999999886 268999999999999999999955 3333 6 999999985
No 18
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=100.00 E-value=7.3e-33 Score=224.27 Aligned_cols=166 Identities=13% Similarity=0.227 Sum_probs=142.1
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCC-CeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYG-RIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g-~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
...++|||+|||..+++++|+ ++|+.|| .|..|.+++ .+.++|||||+|.+.++|.+|+..|||..+.|++|.
T Consensus 115 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 190 (292)
T 2ghp_A 115 LTECTLWMTNFPPSYTQRNIR----DLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLV 190 (292)
T ss_dssp CCSCEEEEECCCTTCCHHHHH----HHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEECCCCCCCHHHHH----HHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 357899999999999999999 9999999 999999987 467899999999999999999999999999999999
Q ss_pred EEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecC
Q 026902 84 IQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQN 163 (231)
Q Consensus 84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 163 (231)
|.++.+...... ........++|||+|
T Consensus 191 v~~a~~~~~~~~-----------------------------------------------------~~~~~~~~~~l~v~n 217 (292)
T 2ghp_A 191 TKVSNPLEKSKR-----------------------------------------------------TDSATLEGREIMIRN 217 (292)
T ss_dssp EEECCCC--------------------------------------------------------------CCTTTEEEEEE
T ss_pred EEECCCCccccc-----------------------------------------------------ccccCCCCceEEEEC
Confidence 999865432111 001234678899999
Q ss_pred CCCC-CCHHHHHHHhccCCCeeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 164 LPHE-TTSSMLEMLFQQYPGFKEVRMIEAK------PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 164 lp~~-~t~~~l~~~f~~~g~v~~v~~~~~~------~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
||.. +++++|+++|++||.|..+.++++. +|+|||+|.+.++|.+|+ .|||..|+| ++|.|.||++
T Consensus 218 lp~~~~t~~~l~~~F~~~G~v~~v~i~~~~~~tg~~~g~afV~F~~~~~A~~A~-~l~g~~~~g-~~i~V~~a~~ 290 (292)
T 2ghp_A 218 LSTELLDENLLRESFEGFGSIEKINIPAGQKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGN-REISVSLADK 290 (292)
T ss_dssp ECTTTCCHHHHHHHHGGGSCEEEEECCSCCC---CCCEEEEEEESSHHHHHHHG-GGTTEEETT-EEEEEEECCC
T ss_pred CCcccCCHHHHHHHHhccCCeeEEEEEecCCcCCCCceEEEEEeCCHHHHHHHH-HhcCCEECC-cEEEEEEecC
Confidence 9999 9999999999999999999998753 589999999999999999 999999999 9999999974
No 19
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=100.00 E-value=3e-32 Score=219.84 Aligned_cols=149 Identities=19% Similarity=0.362 Sum_probs=139.1
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
.++++|||+|||.++|+++|+ ++|+.|| |.++.+ +.++|||||+|.+.++|.+|+..|||..+.|++|.|.+
T Consensus 20 ~~~~~l~V~nLp~~~te~~l~----~~F~~~G-i~~~~~---~~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~i~v~~ 91 (284)
T 3smz_A 20 RNRRKILIRGLPGDVTNQEVH----DLLSDYE-LKYCFV---DKYKGTAFVTLLNGEQAEAAINAFHQSRLRERELSVQL 91 (284)
T ss_dssp HCCCEEEEECCCTTCCHHHHH----HHTTTSC-EEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHH----HHHHHcC-CEEEEE---ecCCCEEEEEeCCHHHHHHHHHHcCCCeeCCeEEEEEe
Confidence 467999999999999999999 9999999 999988 78899999999999999999999999999999999987
Q ss_pred ccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCC
Q 026902 87 AKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPH 166 (231)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~ 166 (231)
+. ...+|||+|||.
T Consensus 92 ~~------------------------------------------------------------------~~~~l~v~nlp~ 105 (284)
T 3smz_A 92 QP------------------------------------------------------------------TDALLCVANLPP 105 (284)
T ss_dssp CC------------------------------------------------------------------CSCEEEEESCCT
T ss_pred cC------------------------------------------------------------------CCCEEEEcCCCC
Confidence 42 446799999999
Q ss_pred CCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 167 ETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 167 ~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.+++++|.++|++||.|..+.++.++ +|+|||+|.+.++|.+|+..|||..+++ ++|.|.|++
T Consensus 106 ~~t~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-~~i~v~~a~ 173 (284)
T 3smz_A 106 SLTQQQFEELVRPFGSLERCFLVYSERTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGP-RTLYVHWTD 173 (284)
T ss_dssp TCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred cCCHHHHHHHHHhcCCeeEEEEEeeCCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC-cEEEEEECC
Confidence 99999999999999999999998753 5899999999999999999999999998 999999986
No 20
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=99.98 E-value=9.1e-32 Score=217.84 Aligned_cols=153 Identities=16% Similarity=0.218 Sum_probs=136.1
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC-CCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT-PKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~-~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
..+++++|||+|||.++|+++|+ ++|+.||+|.+|++.++ ..++|||||+|.+.++|.+|+. ++|..+.|++|.
T Consensus 37 ~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~ 111 (292)
T 2ghp_A 37 RNRELTTVLVKNLPKSYNQNKVY----KYFKHCGPIIHVDVADSLKKNFRFARIEFARYDGALAAIT-KTHKVVGQNEII 111 (292)
T ss_dssp -----CEEEEEEECTTCCHHHHH----HHHGGGSCEEEEEEEECTTSSSEEEEEEESSHHHHHHHHT-TTTCEETTEECE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEECCCCCcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEE
Confidence 35678999999999999999999 99999999999999883 3368999999999999999996 999999999999
Q ss_pred EEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecC
Q 026902 84 IQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQN 163 (231)
Q Consensus 84 v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~n 163 (231)
|.++ ..++|||+|
T Consensus 112 v~~~-------------------------------------------------------------------~~~~l~v~n 124 (292)
T 2ghp_A 112 VSHL-------------------------------------------------------------------TECTLWMTN 124 (292)
T ss_dssp EEEC-------------------------------------------------------------------CSCEEEEEC
T ss_pred EEEC-------------------------------------------------------------------CCCEEEEEC
Confidence 9874 346799999
Q ss_pred CCCCCCHHHHHHHhccCC-CeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 164 LPHETTSSMLEMLFQQYP-GFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 164 lp~~~t~~~l~~~f~~~g-~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
||..+++++|.++|++|| .|..+.++++ .+|+|||+|.+.++|.+|+..|||..+++ ++|.|.|+.
T Consensus 125 lp~~~t~~~l~~~f~~~G~~i~~v~i~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~ 195 (292)
T 2ghp_A 125 FPPSYTQRNIRDLLQDINVVALSIRLPSLRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEG-YTLVTKVSN 195 (292)
T ss_dssp CCTTCCHHHHHHHHHHTTCCCCEEECC-------CCEEEEECSSHHHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred CCCCCCHHHHHHHHHHhCCCeEEEEEEeCCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC-cEEEEEECC
Confidence 999999999999999999 9999999874 37999999999999999999999999999 999999975
No 21
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.92 E-value=4.5e-25 Score=154.29 Aligned_cols=82 Identities=26% Similarity=0.405 Sum_probs=74.2
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec-CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK-TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~-~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
..+++|||+|||+++|+++|+ ++|++||.|.+|++++ .+.++|||||+|.+.++|.+|++.|||..+.|++|+|.
T Consensus 3 ~~~~~lfV~nLp~~~te~~L~----~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~ 78 (115)
T 4f25_A 3 LGSGNIFIKNLDKSIDNKALY----DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVG 78 (115)
T ss_dssp --CCEEEEESCCTTCCHHHHH----HHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CCCCEEEECCCCCCCCHHHHH----HHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEE
Confidence 356789999999999999999 9999999999999988 45589999999999999999999999999999999999
Q ss_pred eccCccc
Q 026902 86 YAKSKSD 92 (231)
Q Consensus 86 ~~~~~~~ 92 (231)
++.++..
T Consensus 79 ~a~~~~~ 85 (115)
T 4f25_A 79 RFKSRKE 85 (115)
T ss_dssp ESSCCCC
T ss_pred ECCCccc
Confidence 9876543
No 22
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.91 E-value=4.4e-24 Score=156.25 Aligned_cols=137 Identities=18% Similarity=0.267 Sum_probs=113.6
Q ss_pred CCCccceEEEEEcCHHHHHHHHHHh-CCceeCCeeeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHHHHhc
Q 026902 48 TPKLRGQAWVVFSEVTAASNAVRQM-QNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEEAQQS 126 (231)
Q Consensus 48 ~~~~~g~afV~f~~~e~A~~a~~~l-~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 126 (231)
....+|+++|+|.+.++|.+|+..+ ||..+.| .+.+.++..+..........
T Consensus 9 g~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~~~~~~~~~~~-------------------------- 61 (150)
T 2i2y_A 9 GKTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKTFTVTEGSHHH-------------------------- 61 (150)
T ss_dssp CSSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTEEEEECSSSSC--------------------------
T ss_pred cccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCccccccccccc--------------------------
Confidence 3567999999999999999999999 9999999 99998875433211100000
Q ss_pred ccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHH
Q 026902 127 SMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQS 206 (231)
Q Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A 206 (231)
..........+.++|||+|||..+++++|+++|++||.|.++.++++++|||||+|.+.++|
T Consensus 62 ------------------~~~~~~~~~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a 123 (150)
T 2i2y_A 62 ------------------HHHMHRDSCPLDCKVYVGNLGNNGNKTELERAFGYYGPLRSVWVARNPPGFAFVEFEDPRDA 123 (150)
T ss_dssp ------------------CCCSCSSSSTTSCEEEEESCCSCCSCHHHHHHHHHHSCEEEEEECSSSCSEEEEEESSHHHH
T ss_pred ------------------cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhhCCEEEEEEeeCCCcEEEEEECCHHHH
Confidence 00012233456788999999999999999999999999999999999889999999999999
Q ss_pred HHHHHHhcCCccCCCCCeEEEecc
Q 026902 207 SMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 207 ~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
..|+..|||..+++ ++|+|.||+
T Consensus 124 ~~A~~~l~g~~~~g-~~l~v~~a~ 146 (150)
T 2i2y_A 124 ADAVRELDGRTLCG-CRVRVELSN 146 (150)
T ss_dssp HHHHHHHSSSCSSS-SCCEEEECC
T ss_pred HHHHHHcCCCEECC-eEEEEEEcC
Confidence 99999999999998 999999986
No 23
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.91 E-value=1.1e-23 Score=155.46 Aligned_cols=139 Identities=19% Similarity=0.241 Sum_probs=104.5
Q ss_pred EEec-CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEeccCccchhhhcCCCcchhhhhHHHHHHHHHhhhHHH
Q 026902 44 VALK-TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKSKSDCVAKEDGSFVPREKKKKQEEKAERKRRAEE 122 (231)
Q Consensus 44 ~~~~-~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 122 (231)
++.. ...++|||||+|.+.++|.+|+..+++....+....+.............
T Consensus 4 kl~ln~~~~~G~~fV~f~~~~~A~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------------- 58 (158)
T 2kn4_A 4 KLILNGKTLKGETTTEAVDAATAEKVFKQYANDNGVDGEWTYDDATKTFTVTEGS------------------------- 58 (158)
T ss_dssp EEEEECSSCEEEEEEECSSHHHHHHHHHHHHHHHTCCCEEEEETTTTEEEEECCC-------------------------
T ss_pred EEEecCccccchhHHHHHHHHhHHHHHHhhcccCCCCCcccccCccccccccccc-------------------------
Confidence 3444 34689999999999999999999888654433333332211110000000
Q ss_pred HHhcccccCCCCCCCCCCcccccccCCCCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEE
Q 026902 123 AQQSSMANGTGAQSNGGTAASFRNANTQETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAF 197 (231)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~af 197 (231)
.............+|||+|||..+++++|+++|++||.|..+.++++ .+||||
T Consensus 59 ----------------------~~~~~~~~~~~~~~l~v~nl~~~~~~~~l~~~F~~~G~v~~~~i~~~~~~g~~~g~af 116 (158)
T 2kn4_A 59 ----------------------HHHHHHMDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAF 116 (158)
T ss_dssp ----------------------CCSSCCCCCCBCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEECCCCSSCTTSCCEEE
T ss_pred ----------------------cccccccCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCccceEEE
Confidence 00001123345788999999999999999999999999999999876 368999
Q ss_pred EEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 198 VEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 198 V~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
|+|.+.++|..|+..|||..|++ ++|+|.||+
T Consensus 117 V~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~ 148 (158)
T 2kn4_A 117 VRFHDKRDAEDAMDAMDGAVLDG-RELRVQMAR 148 (158)
T ss_dssp EEESBHHHHHHHHHHSTTEESSS-SEEEEEEEC
T ss_pred EEECCHHHHHHHHHHhCCCEECC-eEEEEEECC
Confidence 99999999999999999999999 999999996
No 24
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.89 E-value=4.7e-23 Score=145.91 Aligned_cols=94 Identities=31% Similarity=0.542 Sum_probs=86.2
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
+.+.+++++|||+|||+.+++++|++.|+++|++||.|.+|.+.+++.++|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 23 ~~~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l 102 (127)
T 2a3j_A 23 PPHTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPL 102 (127)
T ss_dssp CCCCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEE
Confidence 34557789999999999999999998899999999999999998889999999999999999999999999999999999
Q ss_pred EEEeccCccchhhh
Q 026902 83 RIQYAKSKSDCVAK 96 (231)
Q Consensus 83 ~v~~~~~~~~~~~~ 96 (231)
+|.|+..+......
T Consensus 103 ~V~~a~~~~~~~~~ 116 (127)
T 2a3j_A 103 VITFSETPQSQVAE 116 (127)
T ss_dssp EEEECCCCCHHHHC
T ss_pred EEEEccCcchhccc
Confidence 99999887765543
No 25
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.88 E-value=2.2e-22 Score=136.66 Aligned_cols=79 Identities=18% Similarity=0.404 Sum_probs=74.4
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
..+++|||+|||.++|+++|+ ++|++||+|.+|++++ +|.++|||||+|.+.++|.+|++.|||..+.|++|+
T Consensus 17 ~~gt~lfV~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~ 92 (99)
T 4fxv_A 17 FQGTNLIVNYLPQNMTQDELR----SLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIK 92 (99)
T ss_dssp CCCSEEEEESCCTTCCHHHHH----HHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHH----HHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEE
Confidence 347899999999999999999 9999999999999987 588999999999999999999999999999999999
Q ss_pred EEeccC
Q 026902 84 IQYAKS 89 (231)
Q Consensus 84 v~~~~~ 89 (231)
|.+++|
T Consensus 93 V~~AkP 98 (99)
T 4fxv_A 93 VSYARP 98 (99)
T ss_dssp EEECCB
T ss_pred EEEeeC
Confidence 999864
No 26
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.87 E-value=4.6e-22 Score=134.71 Aligned_cols=91 Identities=60% Similarity=1.018 Sum_probs=82.4
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
.++.+++++|||+|||..+++++|+..|+++|++||.|..|.+.+++.++|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 2 ~~~~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 81 (97)
T 1nu4_A 2 VPETRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPM 81 (97)
T ss_dssp ----CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEE
Confidence 45678899999999999999999999999999999999999998888889999999999999999999999999999999
Q ss_pred EEEeccCccch
Q 026902 83 RIQYAKSKSDC 93 (231)
Q Consensus 83 ~v~~~~~~~~~ 93 (231)
+|.++.++...
T Consensus 82 ~v~~a~~~~~~ 92 (97)
T 1nu4_A 82 RIQYAKTDSDI 92 (97)
T ss_dssp EEEECSSCCTH
T ss_pred EEEEccCCCcc
Confidence 99999876654
No 27
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.86 E-value=3e-21 Score=133.55 Aligned_cols=82 Identities=22% Similarity=0.307 Sum_probs=76.5
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
..++.++|||+|||+.+++++|+ ++|++||.|.+|.+++ ++.++|||||+|.+.++|.+|++.|||..+.|+.
T Consensus 2 g~~p~~~lfV~nL~~~~te~~L~----~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~ 77 (110)
T 3s8s_A 2 GQIPLKEVTFARLNDNVRETFLK----DMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNI 77 (110)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHH----HHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCcEEEEECCCCCCCHHHHH----HHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeE
Confidence 35688999999999999999999 9999999999999987 5889999999999999999999999999999999
Q ss_pred eEEEeccCc
Q 026902 82 MRIQYAKSK 90 (231)
Q Consensus 82 l~v~~~~~~ 90 (231)
|+|.++...
T Consensus 78 i~V~~a~~~ 86 (110)
T 3s8s_A 78 IHAQLDIKG 86 (110)
T ss_dssp CEEEECSTT
T ss_pred EEEEECCCC
Confidence 999998543
No 28
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.86 E-value=3.9e-21 Score=129.90 Aligned_cols=90 Identities=18% Similarity=0.280 Sum_probs=81.3
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
+....+.++|||+|||..+++++|++.|+++|++||.|.+|+++.+...+|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 3 s~~~~~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l 82 (96)
T 2dgx_A 3 SGSSGNGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGSKKI 82 (96)
T ss_dssp CCCCSSCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 34456788999999999999999999999999999999999998754449999999999999999999999999999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+|.++.+...
T Consensus 83 ~V~~a~~~~~ 92 (96)
T 2dgx_A 83 LVSLATGASG 92 (96)
T ss_dssp EEEECCCSSC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 29
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.86 E-value=1.3e-21 Score=136.72 Aligned_cols=82 Identities=32% Similarity=0.541 Sum_probs=76.9
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
...++++|||+|||..+++++|+ ++|+.||.|..|.+++++.++|||||+|.+.++|.+|+..|||..+.|+.|.|
T Consensus 4 ~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v 79 (115)
T 3lqv_A 4 PPEVNRILYIRNLPYKITAEEMY----DIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVV 79 (115)
T ss_dssp CTTCCSEEEEESCCTTCCHHHHH----HHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEE
Confidence 34678999999999999999999 99999999999999998889999999999999999999999999999999999
Q ss_pred EeccCc
Q 026902 85 QYAKSK 90 (231)
Q Consensus 85 ~~~~~~ 90 (231)
.++.++
T Consensus 80 ~~a~~~ 85 (115)
T 3lqv_A 80 LYYNAN 85 (115)
T ss_dssp EECCHH
T ss_pred EEecCC
Confidence 998643
No 30
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.85 E-value=4.6e-21 Score=125.87 Aligned_cols=84 Identities=17% Similarity=0.292 Sum_probs=76.0
Q ss_pred CCCCCCCE-EEEeCCCCccCHHHHHHHHHHhhccC-CCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 4 GDIPPNQT-IYIKNLNEKIKKEELKRSLYCLFSQY-GRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 4 ~~~~~~~~-v~v~nLp~~~te~~l~~~l~~~f~~~-g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
+..+++.+ |||+|||+++++++|+..|+++|++| |+|.+| ++ |+|||.|.+.++|.+|++.|||..+.||+
T Consensus 3 ~~~~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V----tg---G~AfV~F~~~esA~~A~~~l~G~~l~gr~ 75 (96)
T 2diu_A 3 SGSSGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI----TG---CSAILRFINQDSAERAQKRMENEDVFGNR 75 (96)
T ss_dssp SSCCCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC----CT---TCEEEEESSHHHHHHHHHHHTTCCSSSSC
T ss_pred CCCCCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE----ec---CEEEEEECCHHHHHHHHHHhcCCccCCce
Confidence 45566777 99999999999999999999999999 599887 33 99999999999999999999999999999
Q ss_pred eEEEeccCccchh
Q 026902 82 MRIQYAKSKSDCV 94 (231)
Q Consensus 82 l~v~~~~~~~~~~ 94 (231)
|+|.|++.+.+..
T Consensus 76 i~v~~A~~~sd~~ 88 (96)
T 2diu_A 76 IIVSFTPKNRELC 88 (96)
T ss_dssp CEEESSCCSCCCC
T ss_pred EEEEecCCCccee
Confidence 9999999887654
No 31
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.85 E-value=6.7e-22 Score=132.25 Aligned_cols=80 Identities=15% Similarity=0.348 Sum_probs=72.9
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCC-CeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHh-CCceeCCeeeE
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYG-RIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQM-QNFPFYDKPMR 83 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g-~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l-~g~~~~g~~l~ 83 (231)
+++|||+|||.++|+++|+ ++|+.|| .|.+|++++ ++.++|||||+|.+.++|.+|++.+ ++..+.|++|+
T Consensus 1 S~~i~v~nLp~~~te~~l~----~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~ 76 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIR----GQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVS 76 (91)
T ss_dssp CCEEEEETCCSSCCHHHHH----HHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEE
T ss_pred CCEEEEeCCCCCCCHHHHH----HHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEE
Confidence 5799999999999999999 9999999 899999987 5889999999999999999999977 45789999999
Q ss_pred EEeccCccc
Q 026902 84 IQYAKSKSD 92 (231)
Q Consensus 84 v~~~~~~~~ 92 (231)
|.|+.++..
T Consensus 77 V~~a~~~~~ 85 (91)
T 2lxi_A 77 MHYSDPKPK 85 (91)
T ss_dssp EECCCSCCC
T ss_pred EEEcCCCCC
Confidence 999987643
No 32
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.85 E-value=5.5e-21 Score=128.68 Aligned_cols=81 Identities=25% Similarity=0.372 Sum_probs=73.1
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCce--eCCee
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFP--FYDKP 81 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~--~~g~~ 81 (231)
...+++++|||+|||+++|+++|+ ++|++||.|.+|+++ +++|+|||+|.+.++|.+|+..|++.. +.|++
T Consensus 16 ~~~~ps~~l~V~NLp~~~te~~L~----~lF~~fG~V~~v~i~---~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~ 88 (100)
T 3r27_A 16 HKTPASPVVHIRGLIDGVVEADLV----EALQEFGPISYVVVM---PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHP 88 (100)
T ss_dssp -CCCCCSEEEEESCCTTCCHHHHH----HHHGGGSCEEEEEEE---TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEE
T ss_pred ccCCCCcEEEEeCCCCCCCHHHHH----HHHhccCCEEEEEEE---cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcE
Confidence 345789999999999999999999 999999999999995 468999999999999999999999865 78999
Q ss_pred eEEEeccCcc
Q 026902 82 MRIQYAKSKS 91 (231)
Q Consensus 82 l~v~~~~~~~ 91 (231)
|.|.|++.+.
T Consensus 89 i~V~~S~~k~ 98 (100)
T 3r27_A 89 AFVNYSTSQK 98 (100)
T ss_dssp EEEEECSCSC
T ss_pred EEEEeccccc
Confidence 9999997653
No 33
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.85 E-value=2.9e-21 Score=129.84 Aligned_cols=85 Identities=24% Similarity=0.329 Sum_probs=76.8
Q ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCC--eEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCc
Q 026902 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGR--IFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNF 75 (231)
Q Consensus 1 ~~~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~--v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~ 75 (231)
|.......=.+|||+|||+.+|+++|+ ++|++||. |.+|++++ ++.++|||||+|.+.++|.+|++.|||.
T Consensus 1 mg~~~~~~m~tlfV~nL~~~~tee~L~----~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~ 76 (95)
T 2lkz_A 1 MGHHHHHHMDTIILRNIAPHTVVDSIM----TALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSL 76 (95)
T ss_dssp CCCCSSCCCCEEEEESCCTTCCHHHHH----HHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSS
T ss_pred CCcccCCccCEEEEeCCCCcCCHHHHH----HHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCC
Confidence 666777888999999999999999999 99999995 56788887 5889999999999999999999999996
Q ss_pred ----eeCCeeeEEEeccC
Q 026902 76 ----PFYDKPMRIQYAKS 89 (231)
Q Consensus 76 ----~~~g~~l~v~~~~~ 89 (231)
.+.||+|.|.|++.
T Consensus 77 ~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 77 HPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp SSCEEETTEEEEEEECCC
T ss_pred CCCceECCEEEEEEEccC
Confidence 58899999999863
No 34
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.85 E-value=1.2e-20 Score=126.88 Aligned_cols=84 Identities=29% Similarity=0.546 Sum_probs=77.4
Q ss_pred CCCCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCcee
Q 026902 1 MITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPF 77 (231)
Q Consensus 1 ~~~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~ 77 (231)
|+....++.++|||+|||..+++++|+ ++|++||.|..|.++. ++.++|||||+|.+.++|.+|++.|||..+
T Consensus 8 ~~~~~~~~~~~l~V~nlp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~ 83 (94)
T 2e5h_A 8 MSGGLAPSKSTVYVSNLPFSLTNNDLY----RIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQL 83 (94)
T ss_dssp CCCSCCCCTTSEEEESCCTTSCHHHHH----HHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEE
T ss_pred CCCCCCCCCCEEEEECCCCCCCHHHHH----HHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCee
Confidence 345566789999999999999999999 9999999999999987 377899999999999999999999999999
Q ss_pred CCeeeEEEecc
Q 026902 78 YDKPMRIQYAK 88 (231)
Q Consensus 78 ~g~~l~v~~~~ 88 (231)
.|++|+|.+++
T Consensus 84 ~g~~l~v~~ak 94 (94)
T 2e5h_A 84 FGRVIKASIAI 94 (94)
T ss_dssp TTEEEEEEECC
T ss_pred CCcEEEEEecC
Confidence 99999999874
No 35
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.85 E-value=5.4e-21 Score=129.81 Aligned_cols=75 Identities=21% Similarity=0.470 Sum_probs=70.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
.+++|||+|||.++|+++|+++|++||.|.++.+++++ +|||||+|.+.++|.+|+..|||..|+| ++|+|+||
T Consensus 18 ~gt~lfV~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g-r~l~V~~A 96 (99)
T 4fxv_A 18 QGTNLIVNYLPQNMTQDELRSLFSSIGEVESAKLIRDKVAGHSLGYGFVNYVTAKDAERAINTLNGLRLQS-KTIKVSYA 96 (99)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEEC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEeEeeecCCCCcccccEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEe
Confidence 45679999999999999999999999999999999863 5899999999999999999999999999 99999999
Q ss_pred c
Q 026902 230 K 230 (231)
Q Consensus 230 ~ 230 (231)
|
T Consensus 97 k 97 (99)
T 4fxv_A 97 R 97 (99)
T ss_dssp C
T ss_pred e
Confidence 6
No 36
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=99.84 E-value=1e-20 Score=127.37 Aligned_cols=78 Identities=18% Similarity=0.258 Sum_probs=72.1
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCc--cCCCCCeEEEec
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFK--ITPQNPMAITFA 229 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~--i~~~~~l~V~~a 229 (231)
..+++++|||+|||..+|+++|.++|++||.|.++.++++ +|+|||+|.+.++|.+|+..|||.. +.| ++|.|+||
T Consensus 17 ~~~ps~~l~V~NLp~~~te~~L~~lF~~fG~V~~v~i~~~-kg~AFVef~~~~~A~~Av~~ln~~~~~i~G-r~i~V~~S 94 (100)
T 3r27_A 17 KTPASPVVHIRGLIDGVVEADLVEALQEFGPISYVVVMPK-KRQALVEFEDVLGACNAVNYAADNQIYIAG-HPAFVNYS 94 (100)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCEEETT-EEEEEEEC
T ss_pred cCCCCcEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhcCCCceeCC-cEEEEEec
Confidence 4558899999999999999999999999999999999875 4899999999999999999999986 778 99999999
Q ss_pred cC
Q 026902 230 KK 231 (231)
Q Consensus 230 ~~ 231 (231)
+.
T Consensus 95 ~~ 96 (100)
T 3r27_A 95 TS 96 (100)
T ss_dssp SC
T ss_pred cc
Confidence 74
No 37
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.84 E-value=2.1e-20 Score=126.97 Aligned_cols=86 Identities=22% Similarity=0.319 Sum_probs=79.6
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
.+..++++|||+|||..+++++|+ ++|+.||.|..|.+++ ++.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 78 (99)
T 1whw_A 3 SGSSGSGRLFVRNLSYTSSEEDLE----KLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGR 78 (99)
T ss_dssp CCCCSCEEEEEECCCTTCCHHHHH----HHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 456789999999999999999999 9999999999999987 578999999999999999999999999999999
Q ss_pred eeEEEeccCccch
Q 026902 81 PMRIQYAKSKSDC 93 (231)
Q Consensus 81 ~l~v~~~~~~~~~ 93 (231)
+|+|.++.++...
T Consensus 79 ~l~V~~a~~~~~~ 91 (99)
T 1whw_A 79 MLHVLPSTIKKEA 91 (99)
T ss_dssp EEEEEECCCCSTT
T ss_pred EEEEEEcCCCccc
Confidence 9999999876553
No 38
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.84 E-value=1.3e-20 Score=130.03 Aligned_cols=84 Identities=21% Similarity=0.473 Sum_probs=78.0
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
+..++.++|||+|||..+++++|+ ++|++||.|..|.+++ ++.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~ 96 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLR----GIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAGR 96 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHH----HHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 445778999999999999999999 9999999999999986 578899999999999999999999999999999
Q ss_pred eeEEEeccCcc
Q 026902 81 PMRIQYAKSKS 91 (231)
Q Consensus 81 ~l~v~~~~~~~ 91 (231)
+|+|.++.+++
T Consensus 97 ~l~V~~a~~k~ 107 (108)
T 2jrs_A 97 PMKVGHVTERT 107 (108)
T ss_dssp CCEEECSCSSC
T ss_pred EEEEEEcccCC
Confidence 99999998764
No 39
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.84 E-value=1.9e-20 Score=123.58 Aligned_cols=80 Identities=26% Similarity=0.454 Sum_probs=74.8
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
...+.++|||+|||..+++++|+ ++|++||.|..+.+++ ++.++|||||+|.+.++|.+|++.|||..+.|++
T Consensus 3 ~~~~~~~l~V~nl~~~~~~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 78 (85)
T 3mdf_A 3 MATTKRVLYVGGLAEEVDDKVLH----AAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 78 (85)
T ss_dssp CCCCSSEEEEECCCTTCCHHHHH----HHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHH----HHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 45789999999999999999999 9999999999999876 5778999999999999999999999999999999
Q ss_pred eEEEecc
Q 026902 82 MRIQYAK 88 (231)
Q Consensus 82 l~v~~~~ 88 (231)
|+|.+++
T Consensus 79 l~v~~ak 85 (85)
T 3mdf_A 79 IRVNLAK 85 (85)
T ss_dssp CEEEECC
T ss_pred EEEEEcC
Confidence 9999874
No 40
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.84 E-value=3.5e-20 Score=125.89 Aligned_cols=86 Identities=17% Similarity=0.365 Sum_probs=79.1
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCC
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD 79 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g 79 (231)
.++..+.++|||+|||..+++++|+ ++|+.||.|..|.+++ ++.++|||||+|.+.++|.+|+. ||+..+.|
T Consensus 4 ~~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 78 (99)
T 2dgs_A 4 GSSGSKSNKIFVGGIPHNCGETELR----EYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG 78 (99)
T ss_dssp CCCCSSCCEEEEESCCSSCCHHHHH----HHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC
Confidence 4566789999999999999999999 9999999999999987 47799999999999999999999 99999999
Q ss_pred eeeEEEeccCccch
Q 026902 80 KPMRIQYAKSKSDC 93 (231)
Q Consensus 80 ~~l~v~~~~~~~~~ 93 (231)
++|+|.++.++...
T Consensus 79 ~~l~V~~a~~~~~~ 92 (99)
T 2dgs_A 79 KKVEVKRAEPRDSK 92 (99)
T ss_dssp CBCEEEECCCCCCC
T ss_pred eEEEEEECCCCccc
Confidence 99999999876543
No 41
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.84 E-value=2.4e-20 Score=125.94 Aligned_cols=82 Identities=17% Similarity=0.410 Sum_probs=76.6
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
++++|||+|||..+++++|+ ++|++||.|.+|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 1 P~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 76 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQIL----DLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKC 76 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHH----HHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCcEEEEECCCCCCCHHHHH----HHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 57999999999999999999 9999999999999987 4788999999999999999999999999999999999
Q ss_pred EeccCccch
Q 026902 85 QYAKSKSDC 93 (231)
Q Consensus 85 ~~~~~~~~~ 93 (231)
.++.++...
T Consensus 77 ~~a~~~~~~ 85 (96)
T 2x1f_A 77 GYSSNSDIS 85 (96)
T ss_dssp EECSCSSGG
T ss_pred EEcCCCCCC
Confidence 999876553
No 42
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.84 E-value=1.9e-20 Score=124.03 Aligned_cols=81 Identities=26% Similarity=0.423 Sum_probs=73.1
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..+.++|||+|||..+++++|+ ++|+.||.|.++.+++ ++.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 3 ~~~~~~l~v~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 78 (87)
T 3bs9_A 3 LGSHFHVFVGDLSPEITTAAIA----AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQI 78 (87)
T ss_dssp ---CEEEEEESCCTTCCHHHHH----HHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCceEEEEeCCCCCCCHHHHH----HHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEE
Confidence 4568899999999999999999 9999999999999987 57899999999999999999999999999999999
Q ss_pred EEEeccCc
Q 026902 83 RIQYAKSK 90 (231)
Q Consensus 83 ~v~~~~~~ 90 (231)
+|.++.++
T Consensus 79 ~v~~a~~k 86 (87)
T 3bs9_A 79 RTNWATRK 86 (87)
T ss_dssp EEEEEC--
T ss_pred EEEecCCC
Confidence 99998754
No 43
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=3.1e-20 Score=128.37 Aligned_cols=85 Identities=21% Similarity=0.335 Sum_probs=78.7
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
.+..+.++|||+|||..+++++|+ ++|++||.|..|.+..++.++|||||+|.+.++|.+|++.||+..|.|+.|+
T Consensus 17 ~~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 92 (109)
T 1x4a_A 17 PAGNNDCRIYVGNLPPDIRTKDIE----DVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLR 92 (109)
T ss_dssp CCCCCSSEEEEESCCTTCCHHHHH----HHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345678999999999999999999 9999999999999988888999999999999999999999999999999999
Q ss_pred EEeccCccc
Q 026902 84 IQYAKSKSD 92 (231)
Q Consensus 84 v~~~~~~~~ 92 (231)
|.++.++..
T Consensus 93 V~~a~~~~~ 101 (109)
T 1x4a_A 93 VEFPRSGRG 101 (109)
T ss_dssp EECCCCCCC
T ss_pred EEEcccCCC
Confidence 999976543
No 44
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=3.8e-20 Score=125.93 Aligned_cols=84 Identities=21% Similarity=0.328 Sum_probs=77.5
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
....+.++|||+|||..+++++|+ ++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|++
T Consensus 12 ~~~~~~~~l~v~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 87 (100)
T 2do4_A 12 STSLEKHKLFISGLPFSCTKEELE----EICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENI 87 (100)
T ss_dssp SSCCCCSCEEEESCCTTCCHHHHH----HHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHH----HHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 345678999999999999999999 9999999999999987 5788999999999999999999999999999999
Q ss_pred eEEEeccCcc
Q 026902 82 MRIQYAKSKS 91 (231)
Q Consensus 82 l~v~~~~~~~ 91 (231)
|+|.++.++.
T Consensus 88 l~v~~a~~~~ 97 (100)
T 2do4_A 88 IKVAISNSGP 97 (100)
T ss_dssp EEEEECCCCS
T ss_pred EEEEECCCCC
Confidence 9999997654
No 45
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.84 E-value=3.1e-20 Score=121.95 Aligned_cols=79 Identities=24% Similarity=0.421 Sum_probs=73.8
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
+.+|||+|||..+++++|+ ++|+.||+|.++.+++ ++.++|||||+|.+.++|.+|+..|||..+.|++|+|.
T Consensus 1 t~~l~V~nlp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~ 76 (83)
T 3md1_A 1 TFNLFVGDLNVNVDDETLR----NAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRIN 76 (83)
T ss_dssp CEEEEEECCCTTCCHHHHH----HHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEE
T ss_pred CeEEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEE
Confidence 4689999999999999999 9999999999999986 58899999999999999999999999999999999999
Q ss_pred eccCcc
Q 026902 86 YAKSKS 91 (231)
Q Consensus 86 ~~~~~~ 91 (231)
++.++.
T Consensus 77 ~a~~~~ 82 (83)
T 3md1_A 77 WAAKLE 82 (83)
T ss_dssp ECCCCC
T ss_pred ecCcCC
Confidence 987653
No 46
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.84 E-value=1.1e-20 Score=128.45 Aligned_cols=81 Identities=22% Similarity=0.343 Sum_probs=73.8
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhC--CceeCCeee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQ--NFPFYDKPM 82 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~--g~~~~g~~l 82 (231)
..+++++|||+|||+++|+++|+ ++|++||.|.+|+++++ +|||||+|.+.++|.+|+..|+ +..+.|++|
T Consensus 12 ~~~~~~~LfV~nLp~~vte~dL~----~lF~~fG~V~~v~i~~~---kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l 84 (105)
T 1sjq_A 12 SGVPSRVIHIRKLPIDVTEGEVI----SLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 84 (105)
T ss_dssp CCCCCCEEEECSCCTTSCHHHHH----HHHHHHCCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTSCCEETTEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEEcC---CCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 46789999999999999999999 99999999999999754 8999999999999999999886 478999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+|.++.++..
T Consensus 85 ~V~~A~~~~~ 94 (105)
T 1sjq_A 85 YIQFSNHKEL 94 (105)
T ss_dssp CBCCCSSSSC
T ss_pred EEEEcCCCCC
Confidence 9999976654
No 47
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.84 E-value=4e-20 Score=124.60 Aligned_cols=83 Identities=25% Similarity=0.535 Sum_probs=77.5
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
.+++++|||+|||..+++++|+ ++|++||.|..|.+.+ ++.++|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (95)
T 2dnz_A 2 SSGSSGLYVGSLHFNITEDMLR----GIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAGRPM 77 (95)
T ss_dssp CSCCCEEEEESCCTTCCHHHHH----HHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 4678999999999999999999 9999999999999988 47899999999999999999999999999999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+|.++.++..
T Consensus 78 ~V~~a~~~~~ 87 (95)
T 2dnz_A 78 RVGHVTERLD 87 (95)
T ss_dssp EEEESSCCCC
T ss_pred EEEEcccccC
Confidence 9999987654
No 48
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.83 E-value=2.2e-20 Score=121.50 Aligned_cols=76 Identities=17% Similarity=0.172 Sum_probs=71.4
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
...+.-|||+||++.+||++|+ ++|.+||+|.++++ ..++|||||+|.+.++|.+|++.||+..+.|++|+|.
T Consensus 4 ~~~~~wL~VgNL~~~~te~~L~----~lF~q~G~V~~~~l---~~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~ 76 (89)
T 2wbr_A 4 AWGSSWLLLKNLTAQIDGPTLR----TLCMQHGPLVSFHP---YLNQGIALCKYTTREEANKAQMALNNCVLANTTIFAE 76 (89)
T ss_dssp CCCCCEEEEECCCTTCCCHHHH----HHHHHHSCEEEEEE---ETTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCccceEEEeCCCccCCHHHHH----HHHHhhCCEEEEEE---cCCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEE
Confidence 3568899999999999999999 99999999999999 4589999999999999999999999999999999999
Q ss_pred ecc
Q 026902 86 YAK 88 (231)
Q Consensus 86 ~~~ 88 (231)
++.
T Consensus 77 ~A~ 79 (89)
T 2wbr_A 77 SPS 79 (89)
T ss_dssp CCC
T ss_pred ECC
Confidence 983
No 49
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=2.8e-20 Score=127.28 Aligned_cols=86 Identities=27% Similarity=0.385 Sum_probs=78.9
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCC
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD 79 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g 79 (231)
+++..+.++|||+|||..+++++|+ ++|+.||.|..|.++. ++.++|||||+|.+.++|.+|+..|||..+.|
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g 82 (103)
T 2dnm_A 7 GPDVDGMITLKVDNLTYRTSPDSLR----RVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG 82 (103)
T ss_dssp SSCCSCCCEEEEESCCTTCCHHHHH----HHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT
T ss_pred CCCCCCCeEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC
Confidence 4456778999999999999999999 9999999999999987 47899999999999999999999999999999
Q ss_pred eeeEEEeccCccc
Q 026902 80 KPMRIQYAKSKSD 92 (231)
Q Consensus 80 ~~l~v~~~~~~~~ 92 (231)
+.|+|.++..+..
T Consensus 83 ~~l~V~~a~~~~~ 95 (103)
T 2dnm_A 83 RELRVQVARYGRR 95 (103)
T ss_dssp BCCEEEECSSCCS
T ss_pred cEEEEEECCcCCC
Confidence 9999999976543
No 50
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.83 E-value=2.7e-20 Score=124.70 Aligned_cols=86 Identities=19% Similarity=0.258 Sum_probs=79.3
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec-CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK-TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~-~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
+....+.++|||+|||..+++++|+ ++|++||.|..+.+.+ ++.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 2 ~~~~~~~~~l~V~nlp~~~t~~~l~----~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~ 77 (92)
T 2dgv_A 2 SSGSSGACQIFVRNLPFDFTWKMLK----DKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSGRE 77 (92)
T ss_dssp CCSSSSCCEEEECSCCTTCCHHHHH----HHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBC
T ss_pred CCCCCCCcEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcE
Confidence 3456789999999999999999999 9999999999999987 6889999999999999999999999999999999
Q ss_pred eEEEeccCccc
Q 026902 82 MRIQYAKSKSD 92 (231)
Q Consensus 82 l~v~~~~~~~~ 92 (231)
|+|.++.+...
T Consensus 78 l~v~~a~~~~~ 88 (92)
T 2dgv_A 78 IDVRIDRNASG 88 (92)
T ss_dssp CCCEECSCCSS
T ss_pred EEEEEcCCCCC
Confidence 99999876543
No 51
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.83 E-value=1.3e-20 Score=128.46 Aligned_cols=76 Identities=26% Similarity=0.388 Sum_probs=71.8
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEeccC
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYAKS 89 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~~~ 89 (231)
++|||+|||..+|+++|+ ++|++||.|..|.+..+ ++|||||+|.+.++|.+|+..|||..+.|+.|+|.++.+
T Consensus 1 ~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 74 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELE----RAFSYYGPLRTVWIARN--PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTG 74 (101)
T ss_dssp CEEEEECCCSSCSHHHHH----HHHHHHCCCSEEEEESS--SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSS
T ss_pred CEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEeeC--CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccC
Confidence 589999999999999999 99999999999999776 899999999999999999999999999999999999976
Q ss_pred cc
Q 026902 90 KS 91 (231)
Q Consensus 90 ~~ 91 (231)
+.
T Consensus 75 ~~ 76 (101)
T 2hvz_A 75 MP 76 (101)
T ss_dssp CC
T ss_pred CC
Confidence 54
No 52
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.83 E-value=2.9e-20 Score=125.27 Aligned_cols=82 Identities=22% Similarity=0.402 Sum_probs=75.3
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
+....+.++|||+|||..+++++|+ ++|+.||+|..|.++. ++.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 10 ~~~~~~~~~l~v~nlp~~~~~~~l~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (95)
T 2ywk_A 10 PAQEEADRTVFVGNLEARVREEILY----ELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGR 85 (95)
T ss_dssp --CTTGGGEEEEECCCTTCCHHHHH----HHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTE
T ss_pred CCCCCCCCEEEEECCCCCCCHHHHH----HHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCC
Confidence 4456778999999999999999999 9999999999999987 477899999999999999999999999999999
Q ss_pred eeEEEecc
Q 026902 81 PMRIQYAK 88 (231)
Q Consensus 81 ~l~v~~~~ 88 (231)
+|+|.++.
T Consensus 86 ~l~V~~a~ 93 (95)
T 2ywk_A 86 PINVSGPS 93 (95)
T ss_dssp ECEEECCC
T ss_pred EEEEEEcC
Confidence 99999975
No 53
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5.1e-20 Score=125.98 Aligned_cols=84 Identities=25% Similarity=0.442 Sum_probs=77.9
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
+..++++|||+|||..+++++|+ ++|+.||.|..|.+++ ++.++|||||+|.+.++|.+|+..|||..|.|+.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 86 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQ----ELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLI 86 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHH----TTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcE
Confidence 34668999999999999999999 9999999999999987 5789999999999999999999999999999999
Q ss_pred eEEEeccCccc
Q 026902 82 MRIQYAKSKSD 92 (231)
Q Consensus 82 l~v~~~~~~~~ 92 (231)
|+|.++.++..
T Consensus 87 l~v~~a~~~~~ 97 (103)
T 2cq0_A 87 LNVEWAKPSTN 97 (103)
T ss_dssp CEEEESSCCCC
T ss_pred EEEEECCCCCC
Confidence 99999987654
No 54
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=5e-20 Score=126.42 Aligned_cols=85 Identities=27% Similarity=0.430 Sum_probs=78.8
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
.+..+.++|||+|||..+++++|+ ++|++||.|..|.++. ++.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLW----ELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGK 85 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHH----HHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECCe
Confidence 445678999999999999999999 9999999999999987 578999999999999999999999999999999
Q ss_pred eeEEEeccCccc
Q 026902 81 PMRIQYAKSKSD 92 (231)
Q Consensus 81 ~l~v~~~~~~~~ 92 (231)
+|+|.++.++..
T Consensus 86 ~l~v~~a~~~~~ 97 (105)
T 1x5u_A 86 PIRVNKASAHNK 97 (105)
T ss_dssp BCEEEETTTTSC
T ss_pred EEEEEECCCCCc
Confidence 999999977654
No 55
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.83 E-value=7.1e-20 Score=125.68 Aligned_cols=84 Identities=20% Similarity=0.375 Sum_probs=77.4
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCC---e
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD---K 80 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g---~ 80 (231)
..++++|||+|||..+++++|+ ++|+.||.|..|.+.+ ++.++|||||+|.+.++|.+|+..|||..+.| +
T Consensus 12 ~~~~~~l~v~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~ 87 (105)
T 2dnh_A 12 GGRDRKLFVGMLNKQQSEEDVL----RLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASS 87 (105)
T ss_dssp CCCCCEEEEESCCTTCCHHHHH----HHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSS
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCc
Confidence 3568999999999999999999 9999999999999987 57889999999999999999999999999998 9
Q ss_pred eeEEEeccCccch
Q 026902 81 PMRIQYAKSKSDC 93 (231)
Q Consensus 81 ~l~v~~~~~~~~~ 93 (231)
+|+|.++.++...
T Consensus 88 ~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 88 SLVVKFADTDKES 100 (105)
T ss_dssp CCEEEESCSSCCC
T ss_pred cEEEEECccCccc
Confidence 9999999876553
No 56
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=4.7e-20 Score=124.23 Aligned_cols=82 Identities=26% Similarity=0.388 Sum_probs=75.9
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
.+..++++|||+|||..+++++|+ ++|+.||.|..|.++. ++.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 10 ~~~~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 85 (95)
T 2cqc_A 10 ANPDPNCCLGVFGLSLYTTERDLR----EVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 85 (95)
T ss_dssp CSCCGGGCEEEESCCSSCCHHHHH----HHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHH----HHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 345678999999999999999999 9999999999999987 478899999999999999999999999999999
Q ss_pred eeEEEeccC
Q 026902 81 PMRIQYAKS 89 (231)
Q Consensus 81 ~l~v~~~~~ 89 (231)
+|+|.+++.
T Consensus 86 ~l~v~~a~~ 94 (95)
T 2cqc_A 86 RIRVSGPSS 94 (95)
T ss_dssp EEEEECCSC
T ss_pred EEEEEecCC
Confidence 999999863
No 57
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.83 E-value=8.7e-21 Score=129.10 Aligned_cols=82 Identities=17% Similarity=0.220 Sum_probs=75.6
Q ss_pred CCCCCCEEEEeCCCC------ccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCc
Q 026902 5 DIPPNQTIYIKNLNE------KIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNF 75 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~------~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~ 75 (231)
+...+++|||+|||+ .+++++|+ ++|++||.|.+|++++ ++.++|||||+|.+.++|.+|+..|||.
T Consensus 2 ~~~~~~~vfV~nLp~v~~~~~~~~~~~L~----~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~ 77 (100)
T 3ns6_A 2 PLGSDQYIVVNGAPVIPSAKVPVLKKALT----SLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGK 77 (100)
T ss_dssp CSCGGGEEEEESCCCCBGGGHHHHHHHHH----HHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCcCcEEEEeCCCcCChHHHHHHHHHHH----HHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCc
Confidence 345689999999999 99999999 9999999999999987 5889999999999999999999999999
Q ss_pred eeCC-eeeEEEeccCc
Q 026902 76 PFYD-KPMRIQYAKSK 90 (231)
Q Consensus 76 ~~~g-~~l~v~~~~~~ 90 (231)
.+.| ++|+|.++.++
T Consensus 78 ~~~g~r~l~V~~a~~~ 93 (100)
T 3ns6_A 78 RLDLKHRLFLYTMKDV 93 (100)
T ss_dssp BSSSSCBCEEEESHHH
T ss_pred ccCCCeEEEEEECchh
Confidence 9999 99999998643
No 58
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=1.2e-19 Score=124.10 Aligned_cols=86 Identities=16% Similarity=0.336 Sum_probs=78.3
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC-CCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT-PKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~-~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
....+.++|||+|||..+++++|+ ++|+.||.|..|.++.+ +.++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLR----QMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKI 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHH----HHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 445778999999999999999999 99999999999999873 4489999999999999999999999999999999
Q ss_pred EEEeccCccch
Q 026902 83 RIQYAKSKSDC 93 (231)
Q Consensus 83 ~v~~~~~~~~~ 93 (231)
+|.++.++...
T Consensus 86 ~v~~a~~~~~~ 96 (103)
T 2cq3_A 86 EVNNATARVMT 96 (103)
T ss_dssp EEEECCSSCCC
T ss_pred EEEEcccCCCC
Confidence 99999876543
No 59
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=7.9e-20 Score=125.00 Aligned_cols=85 Identities=22% Similarity=0.294 Sum_probs=77.6
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC-CCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT-PKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~-~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
.+..+.++|||+|||..+++++|+ ++|+.||.|..|.++++ +.++|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 85 (103)
T 2cqi_A 10 EDDGQPRTLYVGNLSRDVTEVLIL----QLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEV 85 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHH----HHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEE
T ss_pred CCCCCCCEEEEeCCCccCCHHHHH----HHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeE
Confidence 345678999999999999999999 99999999999999883 4478999999999999999999999999999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+|.++.++..
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2cqi_A 86 KVNWATTPSS 95 (103)
T ss_dssp EEEECCCTTC
T ss_pred EEEECCCCcc
Confidence 9999987554
No 60
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.4e-20 Score=128.16 Aligned_cols=85 Identities=18% Similarity=0.359 Sum_probs=77.9
Q ss_pred CCCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec-CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK-TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 2 ~~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~-~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
...+..+.++|||+|||..+++++|+ ++|+.||.|..|.+.+ .+.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 22 ~~~~~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~ 97 (109)
T 2err_A 22 NTENKSQPKRLHVSNIPFRFRDPDLR----QMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEGR 97 (109)
T ss_dssp CCSCTTCCCEEEEESCCTTCCHHHHH----HHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETTE
T ss_pred CccCCCCCCEEEEECCCCcCCHHHHH----HHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 34556788999999999999999999 9999999999999987 355899999999999999999999999999999
Q ss_pred eeEEEeccCc
Q 026902 81 PMRIQYAKSK 90 (231)
Q Consensus 81 ~l~v~~~~~~ 90 (231)
+|+|.++.++
T Consensus 98 ~l~V~~a~~~ 107 (109)
T 2err_A 98 KIEVNNATAR 107 (109)
T ss_dssp ECEEEECCCS
T ss_pred EEEEEECCCC
Confidence 9999998765
No 61
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.9e-20 Score=126.30 Aligned_cols=85 Identities=26% Similarity=0.434 Sum_probs=78.2
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
....+.++|||+|||..+++++|+ ++|+.||.|..|.+++ ++.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 7 ~~~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 2cqb_A 7 GMATTKRVLYVGGLAEEVDDKVLH----AAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGR 82 (102)
T ss_dssp CSCCCCSCEEEESCCSSCCHHHHH----HHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTE
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHH----HHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCc
Confidence 345678999999999999999999 9999999999999987 478999999999999999999999999999999
Q ss_pred eeEEEeccCccc
Q 026902 81 PMRIQYAKSKSD 92 (231)
Q Consensus 81 ~l~v~~~~~~~~ 92 (231)
+|+|.++.++..
T Consensus 83 ~l~V~~a~~~~~ 94 (102)
T 2cqb_A 83 TIRVNLAKPMRI 94 (102)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEeCCCCCC
Confidence 999999987654
No 62
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.83 E-value=7.3e-20 Score=125.20 Aligned_cols=85 Identities=27% Similarity=0.414 Sum_probs=78.6
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec-CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK-TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~-~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
...+.++|||+|||..+++++|+ ++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|++|.
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 86 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLR----KAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLY 86 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHH----HTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEE
Confidence 34578999999999999999999 9999999999999987 578999999999999999999999999999999999
Q ss_pred EEeccCccch
Q 026902 84 IQYAKSKSDC 93 (231)
Q Consensus 84 v~~~~~~~~~ 93 (231)
|.++.++...
T Consensus 87 V~~a~~~~~~ 96 (103)
T 2d9p_A 87 VALAQRKEER 96 (103)
T ss_dssp EEECSSCCCC
T ss_pred EEEecccccC
Confidence 9999876553
No 63
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.83 E-value=3.3e-20 Score=126.64 Aligned_cols=85 Identities=27% Similarity=0.478 Sum_probs=78.4
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
....+.++|||+|||..+++++|+ ++|+.||.|..|.+++ ++.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 7 ~~~~~~~~l~v~nLp~~~t~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~ 82 (102)
T 1x5s_A 7 GMASDEGKLFVGGLSFDTNEQSLE----QVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGR 82 (102)
T ss_dssp CCCCCCSEEEEESCCTTCCHHHHH----HHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSC
T ss_pred CCCCCCCEEEEECCCCCCCHHHHH----HHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 345678999999999999999999 9999999999999987 577899999999999999999999999999999
Q ss_pred eeEEEeccCccc
Q 026902 81 PMRIQYAKSKSD 92 (231)
Q Consensus 81 ~l~v~~~~~~~~ 92 (231)
+|+|.++.++..
T Consensus 83 ~l~v~~a~~~~~ 94 (102)
T 1x5s_A 83 QIRVDQAGKSSD 94 (102)
T ss_dssp CCEEEEEECCCC
T ss_pred EEEEEECCCCCC
Confidence 999999987654
No 64
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.83 E-value=1.8e-20 Score=127.27 Aligned_cols=78 Identities=12% Similarity=0.219 Sum_probs=71.6
Q ss_pred CCCCCCEEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCc--cCCCCCeEEEe
Q 026902 152 TAAPNNILFIQNLPH-ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFK--ITPQNPMAITF 228 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~--i~~~~~l~V~~ 228 (231)
...++++|||+|||. .++++||+++|++||.|.+|.+++++ |+|||+|.+.++|.+|+..||+.. |.| ++|+|.|
T Consensus 11 ~~~p~~~l~V~nLp~~~~te~dL~~lF~~fG~V~~v~i~~~k-g~aFVef~~~~~A~~Ai~~l~~~~~~~~G-r~l~V~~ 88 (102)
T 1x4d_A 11 RVETRRVVHIMDFQRGKNLRYQLLQLVEPFGVISNHLILNKI-NEAFIEMATTEDAQAAVDYYTTTPALVFG-KPVRVHL 88 (102)
T ss_dssp CCCCCCEEEEESCCCSSSHHHHHHTTTGGGSCEEEEEECSSS-SCEEEEESSHHHHHHHHHHHHHSCCEETT-EECEEEE
T ss_pred CCCCCCEEEEeCCCCCcCCHHHHHHHHHhcCCEEEEEEEcCC-CEEEEEECCHHHHHHHHHHHcCCCceECC-cEEEEEE
Confidence 344788999999999 99999999999999999999998875 899999999999999999999754 898 9999999
Q ss_pred ccC
Q 026902 229 AKK 231 (231)
Q Consensus 229 a~~ 231 (231)
|++
T Consensus 89 a~~ 91 (102)
T 1x4d_A 89 SQK 91 (102)
T ss_dssp ECC
T ss_pred CCC
Confidence 984
No 65
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=7.6e-20 Score=126.77 Aligned_cols=87 Identities=20% Similarity=0.373 Sum_probs=79.3
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhC------
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQ------ 73 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~------ 73 (231)
+.+..+.++|||+|||..+++++|+ ++|+.||.|..|.+++ ++.++|||||+|.+.++|.+|+..||
T Consensus 9 ~~~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~ 84 (111)
T 1x4h_A 9 PSDVTEGKTVFIRNLSFDSEEEALG----EVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGG 84 (111)
T ss_dssp CCCCCCCCCEEEESCCTTCCHHHHH----HHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTC
T ss_pred CCcCCCCCEEEEECCCCCCCHHHHH----HHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccC
Confidence 3455678999999999999999999 9999999999999987 47899999999999999999999999
Q ss_pred CceeCCeeeEEEeccCccch
Q 026902 74 NFPFYDKPMRIQYAKSKSDC 93 (231)
Q Consensus 74 g~~~~g~~l~v~~~~~~~~~ 93 (231)
+..+.|++|+|.++.++...
T Consensus 85 ~~~~~g~~l~v~~a~~~~~~ 104 (111)
T 1x4h_A 85 GLKLDGRQLKVDLAVTRDEA 104 (111)
T ss_dssp CEESSSCEEEEECCCCCCCC
T ss_pred CcEEcCEEEEEEECCCCccC
Confidence 99999999999999876543
No 66
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.82 E-value=8.7e-20 Score=127.31 Aligned_cols=85 Identities=28% Similarity=0.445 Sum_probs=78.6
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
.+..+.++|||+|||..+++++|+ ++|+.||.|..|.+++ ++.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 85 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIK----AAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGR 85 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHH----HHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 445678999999999999999999 9999999999999987 578899999999999999999999999999999
Q ss_pred eeEEEeccCccc
Q 026902 81 PMRIQYAKSKSD 92 (231)
Q Consensus 81 ~l~v~~~~~~~~ 92 (231)
.|+|.++.++..
T Consensus 86 ~l~V~~a~~~~~ 97 (115)
T 2dgo_A 86 QIRTNWATRKPP 97 (115)
T ss_dssp ECEEEESSCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999987654
No 67
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=123.42 Aligned_cols=80 Identities=23% Similarity=0.379 Sum_probs=72.5
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhC--CceeCCeeeE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQ--NFPFYDKPMR 83 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~--g~~~~g~~l~ 83 (231)
.+++++|||+|||..+++++|+ ++|++||.|.+|.++++ +|||||+|.+.++|.+|+..|+ +..+.|++|.
T Consensus 12 ~~p~~~l~V~nLp~~~te~~L~----~~F~~fG~v~~v~i~~~---kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~ 84 (101)
T 2cq1_A 12 GAPSRVLHIRKLPGEVTETEVI----ALGLPFGKVTNILMLKG---KNQAFLELATEEAAITMVNYYSAVTPHLRNQPIY 84 (101)
T ss_dssp SSCCSEEEEESCCTTCCHHHHH----HTTTTTSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHHHSCCEETTEECE
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEECC---CCEEEEEECCHHHHHHHHHHhccCCceECCcEEE
Confidence 4678999999999999999999 99999999999988654 8999999999999999999774 6789999999
Q ss_pred EEeccCccc
Q 026902 84 IQYAKSKSD 92 (231)
Q Consensus 84 v~~~~~~~~ 92 (231)
|.|+..+..
T Consensus 85 V~~a~~~~~ 93 (101)
T 2cq1_A 85 IQYSNHKEL 93 (101)
T ss_dssp EEECSCSSC
T ss_pred EEEcCcccC
Confidence 999986654
No 68
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.82 E-value=5e-20 Score=128.56 Aligned_cols=85 Identities=20% Similarity=0.394 Sum_probs=78.1
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
+.++.++|||+|||..+++++|+ ++|+.||.|.+|++++ ++.++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 21 ~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 96 (115)
T 2cpz_A 21 EGPEGANLFIYHLPQEFGDQDLL----QMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKR 96 (115)
T ss_dssp CCSTTCCEEEESCCSSCCHHHHH----HHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34567999999999999999999 9999999999999987 5789999999999999999999999999999999
Q ss_pred eEEEeccCccch
Q 026902 82 MRIQYAKSKSDC 93 (231)
Q Consensus 82 l~v~~~~~~~~~ 93 (231)
|+|.++.++...
T Consensus 97 l~V~~a~~~~~~ 108 (115)
T 2cpz_A 97 LKVQLKRSKNDS 108 (115)
T ss_dssp CEEECCCCSCCC
T ss_pred EEEEEcCCCCcC
Confidence 999999876553
No 69
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.82 E-value=7.5e-20 Score=124.22 Aligned_cols=82 Identities=27% Similarity=0.434 Sum_probs=75.5
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEE--------EEEec---CCCccceEEEEEcCHHHHHHHHHH
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFD--------VVALK---TPKLRGQAWVVFSEVTAASNAVRQ 71 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~--------v~~~~---~~~~~g~afV~f~~~e~A~~a~~~ 71 (231)
.....+.++|||+|||.++++++|+ ++|++||.|.. ++++. ++.++|||||+|.+.++|.+|++.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~ 82 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVA----DYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDW 82 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHH----HHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHH
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHH----HHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHH
Confidence 3455778999999999999999999 99999999999 88876 588999999999999999999999
Q ss_pred hCCceeCCeeeEEEecc
Q 026902 72 MQNFPFYDKPMRIQYAK 88 (231)
Q Consensus 72 l~g~~~~g~~l~v~~~~ 88 (231)
|||..+.|+.|+|.+++
T Consensus 83 l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 83 FDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp HTTCBSSSSBCEEEECC
T ss_pred hCCCEeCCcEEEEEecC
Confidence 99999999999999873
No 70
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=6.9e-20 Score=127.43 Aligned_cols=88 Identities=23% Similarity=0.344 Sum_probs=79.5
Q ss_pred CCCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeE--------EEEEec---CCCccceEEEEEcCHHHHHHHHH
Q 026902 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIF--------DVVALK---TPKLRGQAWVVFSEVTAASNAVR 70 (231)
Q Consensus 2 ~~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~--------~v~~~~---~~~~~g~afV~f~~~e~A~~a~~ 70 (231)
...+..+.++|||+|||..+++++|+ ++|+.||.|. .|++.. ++.++|||||+|.+.++|.+|+.
T Consensus 8 ~~~~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~ 83 (113)
T 2cpe_A 8 DPDEDSDNSAIYVQGLNDSVTLDDLA----DFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVE 83 (113)
T ss_dssp CCCCCCCCCEEEEECCCTTCCHHHHH----HHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHH
T ss_pred CcccCCCCCEEEEcCCCCCCCHHHHH----HHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHH
Confidence 34566789999999999999999999 9999999998 588876 58899999999999999999999
Q ss_pred HhCCceeCCeeeEEEeccCccch
Q 026902 71 QMQNFPFYDKPMRIQYAKSKSDC 93 (231)
Q Consensus 71 ~l~g~~~~g~~l~v~~~~~~~~~ 93 (231)
.|||..|.|++|+|.++.++...
T Consensus 84 ~l~g~~~~g~~l~V~~a~~~~~~ 106 (113)
T 2cpe_A 84 WFDGKDFQGSKLKVSLARKKPPM 106 (113)
T ss_dssp HHTTCEETTEECEEECSSCCCCS
T ss_pred HcCCCccCCCEEEEEECCCCCCC
Confidence 99999999999999999876543
No 71
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=5.7e-20 Score=126.37 Aligned_cols=82 Identities=16% Similarity=0.337 Sum_probs=75.8
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..++++|||+|||..+++++|+ ++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 20 ~~~~~~l~V~nlp~~~t~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 95 (106)
T 1p27_B 20 SVEGWILFVTGVHEEATEEDIH----DKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPI 95 (106)
T ss_dssp BTTBEEEEEECCCTTCCHHHHH----HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBC
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEE
Confidence 3567899999999999999999 9999999999999987 48889999999999999999999999999999999
Q ss_pred EEEeccCcc
Q 026902 83 RIQYAKSKS 91 (231)
Q Consensus 83 ~v~~~~~~~ 91 (231)
+|.++.++.
T Consensus 96 ~V~~a~~~~ 104 (106)
T 1p27_B 96 SVDWCFVRG 104 (106)
T ss_dssp EEEESEESS
T ss_pred EEEeecCCC
Confidence 999987543
No 72
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=2.2e-20 Score=126.95 Aligned_cols=77 Identities=17% Similarity=0.336 Sum_probs=70.9
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC--CccCCCCCeEEEecc
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG--FKITPQNPMAITFAK 230 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng--~~i~~~~~l~V~~a~ 230 (231)
..+.++|||+|||..+++++|+++|++||.|.+|.++++ +|||||+|.+.++|..|+..|++ ..+.| ++|+|.||+
T Consensus 13 ~~~~~~LfV~nLp~~vte~dL~~lF~~fG~V~~v~i~~~-kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~G-r~l~V~~A~ 90 (105)
T 1sjq_A 13 GVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRG-QPIYIQFSN 90 (105)
T ss_dssp CCCCCEEEECSCCTTSCHHHHHHHHHHHCCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTSCCEETT-EECCBCCCS
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcC-CCEEEEEECCHHHHHHHHHHhccCCceECC-EEEEEEEcC
Confidence 347788999999999999999999999999999999987 59999999999999999998874 78998 999999997
Q ss_pred C
Q 026902 231 K 231 (231)
Q Consensus 231 ~ 231 (231)
.
T Consensus 91 ~ 91 (105)
T 1sjq_A 91 H 91 (105)
T ss_dssp S
T ss_pred C
Confidence 3
No 73
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.82 E-value=6.8e-20 Score=126.83 Aligned_cols=83 Identities=16% Similarity=0.271 Sum_probs=76.5
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
...++++|||+|||..+++++|+ ++|+.||.|..|.++. ++.++|||||+|.+.++|.+|+..|||..+.|++
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~ 97 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQ----EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQT 97 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHH----HHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcE
Confidence 34667899999999999999999 9999999999999986 5788999999999999999999999999999999
Q ss_pred eEEEeccCcc
Q 026902 82 MRIQYAKSKS 91 (231)
Q Consensus 82 l~v~~~~~~~ 91 (231)
|.|.++.++.
T Consensus 98 l~V~~a~~~~ 107 (110)
T 1oo0_B 98 IQVDWCFVKG 107 (110)
T ss_dssp CEEEESEESS
T ss_pred EEEEEcccCC
Confidence 9999987554
No 74
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=4.1e-20 Score=124.75 Aligned_cols=83 Identities=25% Similarity=0.452 Sum_probs=76.9
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEE-EEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v-~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
..++++|||+|||..+++++|+ ++|+.||.|..+ ++++ ++.++|||||+|.+.++|.+|+..|||..+.|++
T Consensus 2 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 77 (96)
T 1x5t_A 2 SSGSSGIFIGNLDPEIDEKLLY----DTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRP 77 (96)
T ss_dssp CSCCCEEEEECCCTTCCHHHHH----HHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 4678999999999999999999 999999999988 8876 5788999999999999999999999999999999
Q ss_pred eEEEeccCccc
Q 026902 82 MRIQYAKSKSD 92 (231)
Q Consensus 82 l~v~~~~~~~~ 92 (231)
|+|.++.++..
T Consensus 78 l~v~~a~~~~~ 88 (96)
T 1x5t_A 78 ITVSYAFKKDS 88 (96)
T ss_dssp CEEEESCCCCC
T ss_pred EEEEEecccCC
Confidence 99999987654
No 75
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.6e-20 Score=124.59 Aligned_cols=83 Identities=23% Similarity=0.327 Sum_probs=76.3
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec------CCCccceEEEEEcCHHHHHHHHHHhCCceeCC
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK------TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD 79 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~------~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g 79 (231)
..++++|||+|||..+++++|+ ++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g 77 (98)
T 2cpf_A 2 SSGSSGLFIKNLNFSTTEETLK----GVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG 77 (98)
T ss_dssp CCCCCCEEEESCCTTCCHHHHH----HHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC
Confidence 4678999999999999999999 9999999999999986 23789999999999999999999999999999
Q ss_pred eeeEEEeccCccc
Q 026902 80 KPMRIQYAKSKSD 92 (231)
Q Consensus 80 ~~l~v~~~~~~~~ 92 (231)
++|+|.++.++..
T Consensus 78 ~~l~V~~a~~~~~ 90 (98)
T 2cpf_A 78 HKLEVRISERATK 90 (98)
T ss_dssp EECEEECSSCSSC
T ss_pred eEEEEEEccCCCC
Confidence 9999999976544
No 76
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.82 E-value=4.7e-20 Score=125.21 Aligned_cols=85 Identities=15% Similarity=0.354 Sum_probs=77.9
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeE-EEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeC
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIF-DVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFY 78 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~-~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~ 78 (231)
+....++++|||+|||..+++++|+ ++|++||.|. .|++++ ++.++|||||+|.+.++|.+|++.|||..+.
T Consensus 3 s~~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~ 78 (99)
T 2div_A 3 SGSSGMAASLWMGDLEPYMDENFIS----RAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLP 78 (99)
T ss_dssp CCCCSSSSEEEECSCCTTCCHHHHH----HHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEES
T ss_pred CCCCCCccEEEEeCCCCCCCHHHHH----HHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccC
Confidence 4556789999999999999999999 9999999999 999887 5789999999999999999999999999999
Q ss_pred Cee----eEEEeccCcc
Q 026902 79 DKP----MRIQYAKSKS 91 (231)
Q Consensus 79 g~~----l~v~~~~~~~ 91 (231)
|+. |+|.|+.+..
T Consensus 79 g~~~~~~l~v~~a~~~~ 95 (99)
T 2div_A 79 GATPAKRFKLNYATYSG 95 (99)
T ss_dssp SCSSCEECCEEETTCCS
T ss_pred CCCcceeEEEeecCCCC
Confidence 999 9999987543
No 77
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=1.1e-19 Score=123.35 Aligned_cols=79 Identities=19% Similarity=0.334 Sum_probs=71.7
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc--CCccCCCCCeEEEe
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ--GFKITPQNPMAITF 228 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~ln--g~~i~~~~~l~V~~ 228 (231)
...+++++|||+|||..+++++|+++|++||.|..+.++++ +|+|||+|.+.++|..|+..|| +..+.| ++|+|.|
T Consensus 10 ~~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~v~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~~~G-r~l~V~~ 87 (101)
T 2cq1_A 10 MDGAPSRVLHIRKLPGEVTETEVIALGLPFGKVTNILMLKG-KNQAFLELATEEAAITMVNYYSAVTPHLRN-QPIYIQY 87 (101)
T ss_dssp CCSSCCSEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCEETT-EECEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECC-cEEEEEE
Confidence 34457889999999999999999999999999999999887 5999999999999999999875 677998 9999999
Q ss_pred ccC
Q 026902 229 AKK 231 (231)
Q Consensus 229 a~~ 231 (231)
|+.
T Consensus 88 a~~ 90 (101)
T 2cq1_A 88 SNH 90 (101)
T ss_dssp CSC
T ss_pred cCc
Confidence 974
No 78
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.82 E-value=6.9e-20 Score=126.63 Aligned_cols=77 Identities=17% Similarity=0.222 Sum_probs=72.2
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
++.++|||+|||..+++++|+++|++||.|.++.+++++ +|||||+|.+.++|.+|+..|||..+++ +.|+|.+
T Consensus 4 ~p~~~lfV~nL~~~~te~~L~~~F~~~G~i~~v~i~~d~~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~g-r~i~V~~ 82 (110)
T 3s8s_A 4 IPLKEVTFARLNDNVRETFLKDMCRKYGEVEEVEILLHPRTRKHLGLARVLFTSTRGAKETVKNLHLTSVMG-NIIHAQL 82 (110)
T ss_dssp SCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CCCcEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCceeeEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEE
Confidence 467889999999999999999999999999999999863 5899999999999999999999999999 9999999
Q ss_pred ccC
Q 026902 229 AKK 231 (231)
Q Consensus 229 a~~ 231 (231)
|++
T Consensus 83 a~~ 85 (110)
T 3s8s_A 83 DIK 85 (110)
T ss_dssp CST
T ss_pred CCC
Confidence 864
No 79
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=8.8e-20 Score=124.64 Aligned_cols=82 Identities=18% Similarity=0.302 Sum_probs=73.1
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCC--ceeCCeee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQN--FPFYDKPM 82 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g--~~~~g~~l 82 (231)
..+++++|||+|||..+++++|+ ++|++||.|.+|.+++ .+|||||+|.+.++|.+|+..|++ ..+.|++|
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~----~~F~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l 83 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLV----EALEKFGTICYVMMMP---FKRQALVEFENIDSAKECVTFAADVPVYIAGQQA 83 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHH----HHHTTTSCEEEEEEET---TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHH----HHHHhCCCEEEEEEEC---CCCEEEEEECCHHHHHHHHHHhccCCceECCEEE
Confidence 34678999999999999999999 9999999999999864 489999999999999999998875 45999999
Q ss_pred EEEeccCccch
Q 026902 83 RIQYAKSKSDC 93 (231)
Q Consensus 83 ~v~~~~~~~~~ 93 (231)
+|.|+..+...
T Consensus 84 ~V~~a~~~~~~ 94 (104)
T 1wex_A 84 FFNYSTSKRIT 94 (104)
T ss_dssp EEEECSSSSCC
T ss_pred EEEEccCcccc
Confidence 99999876543
No 80
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=5.7e-20 Score=124.79 Aligned_cols=80 Identities=18% Similarity=0.292 Sum_probs=71.9
Q ss_pred CCCCCEEEEeCCCC-ccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCC--ceeCCeee
Q 026902 6 IPPNQTIYIKNLNE-KIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQN--FPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~-~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g--~~~~g~~l 82 (231)
..++++|||+|||+ ++|++||+ ++|++||.|.+|++++ .+|||||+|.+.++|.+|+..||+ ..+.|++|
T Consensus 12 ~~p~~~l~V~nLp~~~~te~dL~----~lF~~fG~V~~v~i~~---~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l 84 (102)
T 1x4d_A 12 VETRRVVHIMDFQRGKNLRYQLL----QLVEPFGVISNHLILN---KINEAFIEMATTEDAQAAVDYYTTTPALVFGKPV 84 (102)
T ss_dssp CCCCCEEEEESCCCSSSHHHHHH----TTTGGGSCEEEEEECS---SSSCEEEEESSHHHHHHHHHHHHHSCCEETTEEC
T ss_pred CCCCCEEEEeCCCCCcCCHHHHH----HHHHhcCCEEEEEEEc---CCCEEEEEECCHHHHHHHHHHHcCCCceECCcEE
Confidence 35789999999999 99999999 9999999999999954 479999999999999999999986 45999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+|.++..+..
T Consensus 85 ~V~~a~~~~~ 94 (102)
T 1x4d_A 85 RVHLSQKYKR 94 (102)
T ss_dssp EEEEECCCTT
T ss_pred EEEECCCCCC
Confidence 9999986543
No 81
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.82 E-value=1.4e-19 Score=123.60 Aligned_cols=78 Identities=13% Similarity=0.158 Sum_probs=71.1
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCc--cCCCCCeEEEec
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFK--ITPQNPMAITFA 229 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~--i~~~~~l~V~~a 229 (231)
..+++++|||+|||..+++++|+++|++||.|..+.++++ +|+|||+|.+.++|.+|+..||+.. +.| ++|+|.||
T Consensus 11 ~~~p~~~l~V~nLp~~~te~~L~~~F~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~i~G-r~l~V~~a 88 (104)
T 1wex_A 11 KVSVSPVVHVRGLCESVVEADLVEALEKFGTICYVMMMPF-KRQALVEFENIDSAKECVTFAADVPVYIAG-QQAFFNYS 88 (104)
T ss_dssp CCCCCSEEEEESCCSSCCHHHHHHHHTTTSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHHHSCCBSSS-SBCEEEEC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEECC-CCEEEEEECCHHHHHHHHHHhccCCceECC-EEEEEEEc
Confidence 4457889999999999999999999999999999999886 5999999999999999999998754 888 99999999
Q ss_pred cC
Q 026902 230 KK 231 (231)
Q Consensus 230 ~~ 231 (231)
+.
T Consensus 89 ~~ 90 (104)
T 1wex_A 89 TS 90 (104)
T ss_dssp SS
T ss_pred cC
Confidence 73
No 82
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.82 E-value=8.1e-20 Score=127.21 Aligned_cols=81 Identities=22% Similarity=0.341 Sum_probs=73.5
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCC--ceeCCeee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQN--FPFYDKPM 82 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g--~~~~g~~l 82 (231)
..+++++|||+|||+++++++|+ ++|+.||.|.+|+++++ +|||||+|.+.++|.+|+..+++ ..+.|++|
T Consensus 27 ~~~ps~~LfVgNLp~~vte~dL~----~lF~~fG~V~~v~i~~~---kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l 99 (119)
T 2ad9_A 27 AGVPSRVIHIRKLPIDVTEGEVI----SLGLPFGKVTNLLMLKG---KNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPI 99 (119)
T ss_dssp CSSCCSEEEEESCCTTCCHHHHH----HHHTTTSCCCEEEEEGG---GTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEeCC---CCEEEEEECCHHHHHHHHHHhccCCceECCeEE
Confidence 45678999999999999999999 99999999999999654 89999999999999999998874 68999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+|.++..+..
T Consensus 100 ~V~~a~~k~~ 109 (119)
T 2ad9_A 100 YIQFSNHKEL 109 (119)
T ss_dssp EEEECSSSSC
T ss_pred EEEEccCCCC
Confidence 9999986654
No 83
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.82 E-value=1.6e-19 Score=124.36 Aligned_cols=81 Identities=21% Similarity=0.384 Sum_probs=75.7
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
+...++++|||+|||..+++++|+ ++|+.||.|..|.++. ++.++|||||+|.+.++|.+|+..|||..+.|++
T Consensus 24 ~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 99 (107)
T 3ulh_A 24 AGVETGGKLLVSNLDFGVSDADIQ----ELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRP 99 (107)
T ss_dssp CCCCCSEEEEEESCCTTCCHHHHH----HHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 445778999999999999999999 9999999999999887 6889999999999999999999999999999999
Q ss_pred eEEEecc
Q 026902 82 MRIQYAK 88 (231)
Q Consensus 82 l~v~~~~ 88 (231)
|+|.++.
T Consensus 100 l~V~~a~ 106 (107)
T 3ulh_A 100 MNIQLVT 106 (107)
T ss_dssp CEEEEEC
T ss_pred EEEEEeC
Confidence 9999975
No 84
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.81 E-value=1e-19 Score=127.14 Aligned_cols=84 Identities=29% Similarity=0.450 Sum_probs=77.9
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
+..+.++|||+|||..+++++|+ ++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 3 e~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l 78 (116)
T 2fy1_A 3 EADHPGKLFIGGLNRETNEKMLK----AVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAI 78 (116)
T ss_dssp TTCSCCEEEEECCTTTCCHHHHH----HHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 35678999999999999999999 9999999999999988 68899999999999999999999999999999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
.|.+++++..
T Consensus 79 ~V~~a~~~~~ 88 (116)
T 2fy1_A 79 KVEQAKKPSF 88 (116)
T ss_dssp EEEECCCSSC
T ss_pred EEEECCCCCC
Confidence 9999986654
No 85
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=99.81 E-value=6.9e-20 Score=120.83 Aligned_cols=77 Identities=21% Similarity=0.413 Sum_probs=72.1
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
..+.++|||+|||..+++++|+++|++||.|..+.++++ .+|+|||+|.+.++|.+|+..|||..+++ ++|+|+
T Consensus 4 ~~~~~~l~V~nl~~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~ 82 (85)
T 3mdf_A 4 ATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-RTIRVN 82 (85)
T ss_dssp CCCSSEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEE
T ss_pred CCCCCEEEEECCCCCCCHHHHHHHHhccCCEEEEEEEECCCCCccccEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEE
Confidence 347789999999999999999999999999999999875 36899999999999999999999999998 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
|||
T Consensus 83 ~ak 85 (85)
T 3mdf_A 83 LAK 85 (85)
T ss_dssp ECC
T ss_pred EcC
Confidence 997
No 86
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.81 E-value=1.8e-19 Score=119.36 Aligned_cols=80 Identities=15% Similarity=0.336 Sum_probs=72.5
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCC
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD 79 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g 79 (231)
+.+..+.++|||+|||..+++++|+ ++|++||.|..+.+++ ++.++|||||+|.+.++|.+|+. +++..+.|
T Consensus 5 ~~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g 79 (87)
T 3s7r_A 5 SKNEEDAGKMFVGGLSWDTSKKDLK----DYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG 79 (87)
T ss_dssp --CCSCTTEEEEECCCTTCCHHHHH----HHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHH----HHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC
Confidence 3456789999999999999999999 9999999999999986 58899999999999999999997 68889999
Q ss_pred eeeEEEec
Q 026902 80 KPMRIQYA 87 (231)
Q Consensus 80 ~~l~v~~~ 87 (231)
+.|.|.+|
T Consensus 80 ~~i~v~~A 87 (87)
T 3s7r_A 80 RVIDPKKA 87 (87)
T ss_dssp EEEEEEEC
T ss_pred EEEEEEeC
Confidence 99999875
No 87
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=1.7e-19 Score=124.16 Aligned_cols=85 Identities=22% Similarity=0.368 Sum_probs=78.0
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec----CCCccceEEEEEcCHHHHHHHHHHh-CCceeC
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK----TPKLRGQAWVVFSEVTAASNAVRQM-QNFPFY 78 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~----~~~~~g~afV~f~~~e~A~~a~~~l-~g~~~~ 78 (231)
....+.++|||+|||..+++++|+ ++|+.||.|..|.+++ ++.++|||||+|.+.++|.+|+..| ||..|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~ 85 (107)
T 2cph_A 10 PKKQTTSKILVRNIPFQANQREIR----ELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLY 85 (107)
T ss_dssp CCSSCCCCEEEESCCTTCCHHHHH----HHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSS
T ss_pred ccCCCCCEEEEeCCCCcCCHHHHH----HHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeEC
Confidence 445778999999999999999999 9999999999999965 4778999999999999999999999 999999
Q ss_pred CeeeEEEeccCccc
Q 026902 79 DKPMRIQYAKSKSD 92 (231)
Q Consensus 79 g~~l~v~~~~~~~~ 92 (231)
|++|+|.++.++..
T Consensus 86 g~~l~v~~a~~~~~ 99 (107)
T 2cph_A 86 GRRLVLEWADSEVT 99 (107)
T ss_dssp SCBCEEEECCCCCC
T ss_pred CCEEEEEeCCCCCC
Confidence 99999999987654
No 88
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=1.3e-19 Score=126.22 Aligned_cols=79 Identities=16% Similarity=0.331 Sum_probs=72.4
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC--CccCCCCCeEEEe
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG--FKITPQNPMAITF 228 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng--~~i~~~~~l~V~~ 228 (231)
...+++++|||+|||..+++++|+++|++||.|.++.++++ +|+|||+|.+.++|.+|+..||+ ..+.| ++|+|.|
T Consensus 26 ~~~~ps~~LfVgNLp~~vte~dL~~lF~~fG~V~~v~i~~~-kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~G-r~l~V~~ 103 (119)
T 2ad9_A 26 SAGVPSRVIHIRKLPIDVTEGEVISLGLPFGKVTNLLMLKG-KNQAFIEMNTEEAANTMVNYYTSVTPVLRG-QPIYIQF 103 (119)
T ss_dssp SCSSCCSEEEEESCCTTCCHHHHHHHHTTTSCCCEEEEEGG-GTEEEEECSCHHHHHHHHHHHHHHCCCBTT-BCCEEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEECCHHHHHHHHHHhccCCceECC-eEEEEEE
Confidence 34557889999999999999999999999999999999987 59999999999999999999984 68998 9999999
Q ss_pred ccC
Q 026902 229 AKK 231 (231)
Q Consensus 229 a~~ 231 (231)
|+.
T Consensus 104 a~~ 106 (119)
T 2ad9_A 104 SNH 106 (119)
T ss_dssp CSS
T ss_pred ccC
Confidence 974
No 89
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.81 E-value=1.7e-19 Score=119.73 Aligned_cols=81 Identities=19% Similarity=0.241 Sum_probs=74.0
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC----CCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT----PKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~----~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..+++|||+|||..+++++|+ ++|+.||.|..+.++.+ +.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 2 ~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 77 (88)
T 4a8x_A 2 MKPTKVHIGRLTRNVTKDHIM----EIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDGQEI 77 (88)
T ss_dssp CCCCEEEEECCCTTCCHHHHH----HHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHH----HHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECCeEE
Confidence 457899999999999999999 99999999999999873 2389999999999999999999999999999999
Q ss_pred EEEeccCcc
Q 026902 83 RIQYAKSKS 91 (231)
Q Consensus 83 ~v~~~~~~~ 91 (231)
+|.++.+..
T Consensus 78 ~v~~a~~~~ 86 (88)
T 4a8x_A 78 TATAVLAPW 86 (88)
T ss_dssp EEEEECCCC
T ss_pred EEEECCCCC
Confidence 999986543
No 90
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.81 E-value=8.1e-20 Score=125.40 Aligned_cols=81 Identities=16% Similarity=0.277 Sum_probs=74.2
Q ss_pred CCCCCEEEEeCCCCcc------CHHHHHHHHHHhhccCCCeEEEEEec-CCCccceEEEEEcCHHHHHHHHHHhCCceeC
Q 026902 6 IPPNQTIYIKNLNEKI------KKEELKRSLYCLFSQYGRIFDVVALK-TPKLRGQAWVVFSEVTAASNAVRQMQNFPFY 78 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~------te~~l~~~l~~~f~~~g~v~~v~~~~-~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~ 78 (231)
...+++|||+|||..+ ++++|+ ++|++||.|..|.+++ +|.++|||||+|.+.++|.+|+..|||..|.
T Consensus 12 ~~~~~~l~V~nLp~~~~~~~~~t~~~l~----~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~ 87 (105)
T 2nlw_A 12 DGIDSVIVVDNVPQVGPDRLEKLKNVIH----KIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLD 87 (105)
T ss_dssp CSCCSEEEEESCCCCCTTTTTHHHHHHH----HHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECS
T ss_pred CCCCCEEEEeCCCcchhhhhHHHHHHHH----HHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccC
Confidence 3457899999999999 678888 9999999999999986 7889999999999999999999999999999
Q ss_pred Ce-eeEEEeccCc
Q 026902 79 DK-PMRIQYAKSK 90 (231)
Q Consensus 79 g~-~l~v~~~~~~ 90 (231)
|+ +|+|.++...
T Consensus 88 g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 88 KQHTFRVNLFTDF 100 (105)
T ss_dssp TTCEEEEECSCCC
T ss_pred CCceEEEEEcchH
Confidence 98 9999998643
No 91
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.81 E-value=9.8e-20 Score=125.17 Aligned_cols=85 Identities=22% Similarity=0.439 Sum_probs=77.7
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCcee---
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPF--- 77 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~--- 77 (231)
....+.++|||+|||..+++++|+ ++|+.||.|..|+++. ++.++|||||+|.+.++|.+|+..|||..+
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~ 83 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLK----PLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPG 83 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHH----HHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTT
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCC
Confidence 345678999999999999999999 9999999999999988 478999999999999999999999999887
Q ss_pred CCeeeEEEeccCccc
Q 026902 78 YDKPMRIQYAKSKSD 92 (231)
Q Consensus 78 ~g~~l~v~~~~~~~~ 92 (231)
.|++|+|.++.++..
T Consensus 84 ~g~~l~v~~a~~~~~ 98 (106)
T 2dgp_A 84 MNRPIQVKPADSESR 98 (106)
T ss_dssp CSSCCEEEECCCCSC
T ss_pred CCceEEEEECCcccc
Confidence 889999999976654
No 92
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=7.7e-20 Score=125.52 Aligned_cols=87 Identities=18% Similarity=0.326 Sum_probs=79.3
Q ss_pred CCCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeC
Q 026902 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFY 78 (231)
Q Consensus 2 ~~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~ 78 (231)
...+..+.++|||+|||..+++++|+ ++|+.||.|..|.+++ ++.++|||||+|.+.++|.+|+.. ++..|.
T Consensus 9 ~~~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~ 83 (105)
T 2dh8_A 9 NNSGADEIGKLFVGGLDWSTTQETLR----SYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLD 83 (105)
T ss_dssp CCCCSSSSSEECCBSCCTTCCHHHHH----HHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEET
T ss_pred CcCCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeEC
Confidence 44556789999999999999999999 9999999999999987 478999999999999999999997 999999
Q ss_pred CeeeEEEeccCccch
Q 026902 79 DKPMRIQYAKSKSDC 93 (231)
Q Consensus 79 g~~l~v~~~~~~~~~ 93 (231)
|+.|.|.++.++...
T Consensus 84 g~~l~V~~a~~~~~~ 98 (105)
T 2dh8_A 84 GRNIDPKPCTPRGMQ 98 (105)
T ss_dssp TEEEBCCCSCCSSCC
T ss_pred CEEEEEEEccCCCCC
Confidence 999999999876553
No 93
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=7.2e-20 Score=125.01 Aligned_cols=80 Identities=16% Similarity=0.385 Sum_probs=74.3
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
+..+.++|||+|||.++|+++|+ ++|+.||+|.+|.+++ ++.++|||||+|.+.++|.+|+. ++|..+.|+.|
T Consensus 7 ~~~~~~~lfV~~Lp~~~te~~L~----~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l 81 (103)
T 1s79_A 7 NDVKNRSVYIKGFPTDATLDDIK----EWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDL 81 (103)
T ss_dssp SCSGGGCEEEECCCTTCCHHHHH----HHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTC
T ss_pred ccCCCCEEEEECCCCCCCHHHHH----HHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEE
Confidence 45678999999999999999999 9999999999999987 47799999999999999999999 99999999999
Q ss_pred EEEeccC
Q 026902 83 RIQYAKS 89 (231)
Q Consensus 83 ~v~~~~~ 89 (231)
.|.++..
T Consensus 82 ~V~~~~~ 88 (103)
T 1s79_A 82 LILFKDD 88 (103)
T ss_dssp EEEEHHH
T ss_pred EEEEchH
Confidence 9998753
No 94
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=2.6e-19 Score=121.07 Aligned_cols=81 Identities=25% Similarity=0.472 Sum_probs=74.2
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeC--Cee
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFY--DKP 81 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~--g~~ 81 (231)
....++++|||+|||..+++++|+ ++|++||.|..|.+.. .+|||||+|.+.++|.+|+..|||..+. |++
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~v~~v~~~~---~~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~ 84 (97)
T 1why_A 12 GKANPTTRLWVGGLGPNTSLAALA----REFDRFGSIRTIDHVK---GDSFAYIQYESLDAAQAACAKMRGFPLGGPDRR 84 (97)
T ss_dssp CCCCCCSCEEEECCCSSCCHHHHH----HHHHTTSCEEEEEECS---SSCCEEEEESSHHHHHHHHHHHTTCBCSSSSCB
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEeC---CCCEEEEEECCHHHHHHHHHHHCCCEeCCCCcE
Confidence 445678999999999999999999 9999999999999854 3899999999999999999999999999 999
Q ss_pred eEEEeccCcc
Q 026902 82 MRIQYAKSKS 91 (231)
Q Consensus 82 l~v~~~~~~~ 91 (231)
|+|.++.++.
T Consensus 85 l~V~~a~~~~ 94 (97)
T 1why_A 85 LRVDFAKSGP 94 (97)
T ss_dssp CEEEECCCCC
T ss_pred EEEEECCCCC
Confidence 9999997654
No 95
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.1e-19 Score=123.09 Aligned_cols=82 Identities=21% Similarity=0.360 Sum_probs=75.5
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC----CCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT----PKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~----~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
...+.++|||+|||..+++++|+ ++|+.|| |..|.++++ +.++|||||+|.+.++|.+|+ .||+..|.|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~ 84 (104)
T 1wi8_A 11 PKSPPYTAFLGNLPYDVTEESIK----EFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNK 84 (104)
T ss_dssp CSSSCEEEEEESCCSSCCHHHHH----HHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETTE
T ss_pred CCCCCCEEEEeCCCCcCCHHHHH----HHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCCc
Confidence 34568999999999999999999 9999999 999999873 788999999999999999999 8999999999
Q ss_pred eeEEEeccCccc
Q 026902 81 PMRIQYAKSKSD 92 (231)
Q Consensus 81 ~l~v~~~~~~~~ 92 (231)
.|.|.++.++..
T Consensus 85 ~l~V~~a~~~~~ 96 (104)
T 1wi8_A 85 RIRVDVADQAQD 96 (104)
T ss_dssp ECEEEECCCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999987654
No 96
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=99.81 E-value=9.8e-20 Score=118.47 Aligned_cols=74 Identities=16% Similarity=0.195 Sum_probs=69.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.+.-|||+||++.+|+++|+++|.+||+|.++.+.. ++|||||+|.++++|.+|+..|||..+.+ ++|+|++|.
T Consensus 6 ~~~wL~VgNL~~~~te~~L~~lF~q~G~V~~~~l~~-~kGfaFVey~~~~eA~~Ai~~Ln~~~l~g-r~I~V~~A~ 79 (89)
T 2wbr_A 6 GSSWLLLKNLTAQIDGPTLRTLCMQHGPLVSFHPYL-NQGIALCKYTTREEANKAQMALNNCVLAN-TTIFAESPS 79 (89)
T ss_dssp CCCEEEEECCCTTCCCHHHHHHHHHHSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHHTTEEETT-EEEEEECCC
T ss_pred ccceEEEeCCCccCCHHHHHHHHHhhCCEEEEEEcC-CCcEEEEEECCHHHHHHHHHHhcCCEECC-cEEEEEECC
Confidence 455699999999999999999999999999999987 56999999999999999999999999999 999999984
No 97
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.81 E-value=2.2e-20 Score=124.62 Aligned_cols=79 Identities=14% Similarity=0.172 Sum_probs=68.5
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCC--CeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYG--RIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g--~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
.+|||+|||..+|+++|+ ++|+.|| .|.+++++. +|.++|||||+|.+.++|.+|++.|||..+.|+.|+|
T Consensus 2 ~~l~V~nL~~~~t~~~l~----~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V 77 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLT----EAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVV 77 (90)
T ss_dssp --CEEESCCTTCCHHHHH----HHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEE
T ss_pred eEEEEeCCCCCCCHHHHH----HHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEE
Confidence 479999999999999999 9999999 999999887 6889999999999999999999999999999999999
Q ss_pred EeccCccc
Q 026902 85 QYAKSKSD 92 (231)
Q Consensus 85 ~~~~~~~~ 92 (231)
.++.++..
T Consensus 78 ~~~~~~~~ 85 (90)
T 3p5t_L 78 TPSNKLEH 85 (90)
T ss_dssp CCC-----
T ss_pred EECCCCcc
Confidence 99876543
No 98
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.81 E-value=1e-19 Score=129.45 Aligned_cols=84 Identities=25% Similarity=0.421 Sum_probs=77.4
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
.+..++++|||+|||..+++++|+ ++|+.||.|..|++++ ++.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 41 ~~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~ 116 (129)
T 2kxn_B 41 ANPDPNCCLGVFGLSLYTTERDLR----EVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDGR 116 (129)
T ss_dssp SCCCCSSCBCEETCTTSCCHHHHH----HHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCE
Confidence 345678999999999999999999 9999999999999987 478999999999999999999999999999999
Q ss_pred eeEEEeccCcc
Q 026902 81 PMRIQYAKSKS 91 (231)
Q Consensus 81 ~l~v~~~~~~~ 91 (231)
+|+|.++.++.
T Consensus 117 ~l~V~~a~~~~ 127 (129)
T 2kxn_B 117 RIRVDFSITKR 127 (129)
T ss_dssp CCEESCCSSSS
T ss_pred EEEEEEecCCC
Confidence 99999987653
No 99
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.81 E-value=2.6e-19 Score=119.35 Aligned_cols=80 Identities=23% Similarity=0.483 Sum_probs=74.7
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
++..+.++|||+|||..+++++|+ ++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..+.|++|+
T Consensus 3 ~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~~~-----~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 73 (90)
T 2dnq_A 3 SGSSGMVKLFIGNLPREATEQEIR----SLFEQYGKVLECDII-----KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNIN 73 (90)
T ss_dssp SCSSCCEEEEEESCCSSCCHHHHH----HHHHTSSCEEEEEEE-----TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCeEEEEeCCCCCCCHHHHH----HHHHhCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhcCCccCCcEEE
Confidence 456789999999999999999999 999999999999995 79999999999999999999999999999999
Q ss_pred EEeccCccc
Q 026902 84 IQYAKSKSD 92 (231)
Q Consensus 84 v~~~~~~~~ 92 (231)
|.++.++..
T Consensus 74 v~~a~~~~~ 82 (90)
T 2dnq_A 74 VEASKNKSK 82 (90)
T ss_dssp EECSSCCCC
T ss_pred EEECCCCCC
Confidence 999987654
No 100
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.81 E-value=6.3e-20 Score=126.38 Aligned_cols=82 Identities=15% Similarity=0.254 Sum_probs=73.5
Q ss_pred CCCCCCEEEEeCCCCc-cCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCC--ceeCCee
Q 026902 5 DIPPNQTIYIKNLNEK-IKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQN--FPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~-~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g--~~~~g~~ 81 (231)
+..++++|||+|||++ +++++|+ ++|++||.|.+|+++ +++|||||+|.+.++|.+|+..|++ ..+.|++
T Consensus 21 ~~~p~~~l~V~NLp~~~~te~~L~----~lF~~fG~V~~v~i~---~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~ 93 (112)
T 1x4f_A 21 KQELGRVIHLSNLPHSGYSDSAVL----KLAEPYGKIKNYILM---RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRC 93 (112)
T ss_dssp SSCCCCEEEEESCCCSSCCSHHHH----TTTTTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSC
T ss_pred cCCCCCEEEEeCCCCccCCHHHHH----HHHHhcCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhccCCceECCEE
Confidence 4567999999999998 9999999 999999999999994 5689999999999999999998864 6699999
Q ss_pred eEEEeccCccch
Q 026902 82 MRIQYAKSKSDC 93 (231)
Q Consensus 82 l~v~~~~~~~~~ 93 (231)
|+|.++..+...
T Consensus 94 l~V~~a~~~~~~ 105 (112)
T 1x4f_A 94 VKVDLSEKYKKL 105 (112)
T ss_dssp CEEEEECSCSSS
T ss_pred EEEEECcccccc
Confidence 999999866553
No 101
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.81 E-value=1.3e-19 Score=127.03 Aligned_cols=80 Identities=20% Similarity=0.381 Sum_probs=73.9
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
+..+.++|||+|||..+++++|+ ++|++||.|.+|++++ ++.++|||||+|.+.++|.+|+..|||..+.|++
T Consensus 36 ~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 111 (118)
T 2khc_A 36 EGPEGCNLFIYHLPQEFTDTDLA----STFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKR 111 (118)
T ss_dssp CCCCSEEEEEECSCTTCCHHHHH----HHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEE
Confidence 34567999999999999999999 9999999999999986 4788999999999999999999999999999999
Q ss_pred eEEEecc
Q 026902 82 MRIQYAK 88 (231)
Q Consensus 82 l~v~~~~ 88 (231)
|+|.+++
T Consensus 112 l~V~~ak 118 (118)
T 2khc_A 112 LKVQLKK 118 (118)
T ss_dssp CCEEEC-
T ss_pred EEEEecC
Confidence 9999863
No 102
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.81 E-value=3.6e-19 Score=123.93 Aligned_cols=83 Identities=24% Similarity=0.363 Sum_probs=76.6
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
....++++|||+|||..+++++|+ ++|+.||.|.+|.++. ++.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 10 ~~~~~~~~l~V~nlp~~~~~~~l~----~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 85 (114)
T 2do0_A 10 QAGRLGSTVFVANLDYKVGWKKLK----EVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRP 85 (114)
T ss_dssp CCCCCCSCEEEESCCTTCCHHHHH----HHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCE
Confidence 345678999999999999999999 9999999999999887 5778999999999999999999999999999999
Q ss_pred eEEEeccCc
Q 026902 82 MRIQYAKSK 90 (231)
Q Consensus 82 l~v~~~~~~ 90 (231)
|+|.++...
T Consensus 86 l~v~~a~~~ 94 (114)
T 2do0_A 86 MHVKMDERA 94 (114)
T ss_dssp CEEEECSCC
T ss_pred EEEEEcccC
Confidence 999998644
No 103
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.81 E-value=2.5e-19 Score=125.18 Aligned_cols=84 Identities=19% Similarity=0.276 Sum_probs=77.0
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCC
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD 79 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g 79 (231)
.....+.++|||+|||..+++++|+ ++|++||.|..|++++ ++.++|||||+|.+.++|.+|+..+++ .|.|
T Consensus 11 ~~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g 85 (116)
T 2cqd_A 11 SQKDTTFTKIFVGGLPYHTTDASLR----KYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG 85 (116)
T ss_dssp CCCSCSSSEEEEECCCSSCCHHHHH----HHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT
T ss_pred CcCCCCCCEEEEeCCCCCCCHHHHH----HHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC
Confidence 4456778999999999999999999 9999999999999987 478999999999999999999999998 8999
Q ss_pred eeeEEEeccCcc
Q 026902 80 KPMRIQYAKSKS 91 (231)
Q Consensus 80 ~~l~v~~~~~~~ 91 (231)
++|+|.++..+.
T Consensus 86 ~~l~V~~a~~~~ 97 (116)
T 2cqd_A 86 RKANVNLAYLGA 97 (116)
T ss_dssp EECEEEESTTTC
T ss_pred EEEEEEEcccCC
Confidence 999999997543
No 104
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.81 E-value=1.1e-19 Score=126.88 Aligned_cols=75 Identities=19% Similarity=0.334 Sum_probs=69.8
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK---PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~---~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
...+|||+|||..+++++|+++|++||.|.+|.+++++ +|||||+|.+.++|.+|+..|||..|+| ++|+|.+++
T Consensus 4 ~~~~lfV~nLp~~~te~~L~~~F~~~G~v~~v~i~~d~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g-~~i~V~~a~ 81 (115)
T 4f25_A 4 GSGNIFIKNLDKSIDNKALYDTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLND-RKVFVGRFK 81 (115)
T ss_dssp -CCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEEETTEEEEEEEEEESCHHHHHHHHHHHTTCEETT-EECEEEESS
T ss_pred CCCEEEECCCCCCCCHHHHHHHHhccCCEEEEEEeecCCCCCceEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEECC
Confidence 34579999999999999999999999999999998863 6899999999999999999999999999 999999986
No 105
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=99.81 E-value=4.5e-20 Score=124.00 Aligned_cols=76 Identities=24% Similarity=0.471 Sum_probs=68.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCC--eeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCC----ccCCCCC
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPG--FKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGF----KITPQNP 223 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~--v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~----~i~~~~~ 223 (231)
.=++|||+|||+.+|+++|+++|++||. +.+|+++++ ++|||||+|.+.++|.+|+..|||. .|+| ++
T Consensus 8 ~m~tlfV~nL~~~~tee~L~~~F~~~G~i~v~~v~i~~d~~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~G-r~ 86 (95)
T 2lkz_A 8 HMDTIILRNIAPHTVVDSIMTALSPYASLAVNNIRLIKDKQTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDG-KT 86 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHSTTTCCCCGGGEECCCCSSSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETT-EE
T ss_pred ccCEEEEeCCCCcCCHHHHHHHHHhhCCccEEEEEEEecCCCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECC-EE
Confidence 4467999999999999999999999995 678998876 3689999999999999999999997 4888 99
Q ss_pred eEEEeccC
Q 026902 224 MAITFAKK 231 (231)
Q Consensus 224 l~V~~a~~ 231 (231)
|.|+|||.
T Consensus 87 i~V~~Aks 94 (95)
T 2lkz_A 87 IGVDFAKS 94 (95)
T ss_dssp EEEEECCC
T ss_pred EEEEEccC
Confidence 99999983
No 106
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=1.7e-19 Score=118.92 Aligned_cols=79 Identities=19% Similarity=0.408 Sum_probs=72.8
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHh-CCceeCCee
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQM-QNFPFYDKP 81 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l-~g~~~~g~~ 81 (231)
+++..+.++|||+|||..+++++|+ ++|++||.|..|.+.+ ++|||||+|.+.++|.+|+..| +|..+.|++
T Consensus 6 ~~~~~~~~~l~V~~l~~~~t~~~l~----~~f~~~G~i~~~~~~~---~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~ 78 (85)
T 2ytc_A 6 SGEDKTITTLYVGGLGDTITETDLR----NHFYQFGEIRTITVVQ---RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRR 78 (85)
T ss_dssp CCSCSSCCCEEEECCTTTSCHHHHH----HHHHTTSCEEEEEEEG---GGTEEEEEESSHHHHHHHHHTTTTTCEETTEE
T ss_pred CCCCCCccEEEEcCCCCCCCHHHHH----HHHHhCCCEeEEEEEC---CCCEEEEEECCHHHHHHHHHHhcCCeeECCCE
Confidence 4456778999999999999999999 9999999999999964 5899999999999999999998 999999999
Q ss_pred eEEEecc
Q 026902 82 MRIQYAK 88 (231)
Q Consensus 82 l~v~~~~ 88 (231)
|+|.|++
T Consensus 79 l~v~~ak 85 (85)
T 2ytc_A 79 LNVKWGR 85 (85)
T ss_dssp CCEEECC
T ss_pred EEEEecC
Confidence 9999874
No 107
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=1.3e-19 Score=124.12 Aligned_cols=86 Identities=20% Similarity=0.305 Sum_probs=79.1
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhcc-CCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCce-eCC
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQ-YGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFP-FYD 79 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~-~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~-~~g 79 (231)
++..++++|||+|||..+|+++|+ ++|+. ||.|..|.+++ ++.++|||||+|.+.++|.+|+..|||.. +.|
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g 79 (104)
T 2dhg_A 4 GSSGPEYSLFVGDLTPDVDDGMLY----EFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS 79 (104)
T ss_dssp CCSSCCCCEEEECCCTTCCHHHHH----HHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHH----HHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC
Confidence 456778999999999999999999 99999 99999999987 68899999999999999999999999999 999
Q ss_pred eeeEEEeccCccch
Q 026902 80 KPMRIQYAKSKSDC 93 (231)
Q Consensus 80 ~~l~v~~~~~~~~~ 93 (231)
++|+|.++.++...
T Consensus 80 ~~l~v~~a~~~~~~ 93 (104)
T 2dhg_A 80 KPVRLSVAIPKASR 93 (104)
T ss_dssp SCCCCCBCCCCCSC
T ss_pred EeEEEEEccCCCcC
Confidence 99999999766543
No 108
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=4.3e-20 Score=126.55 Aligned_cols=83 Identities=20% Similarity=0.378 Sum_probs=76.5
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..+.++|||+|||..+++++|+ ++|+.||.|..+.+.+ ++.++|||||+|.+.++|.+|+..|||..+.|+.|
T Consensus 5 ~~~~~~l~V~nlp~~~~~~~l~----~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 80 (104)
T 1p1t_A 5 DRSLRSVFVGNIPYEATEEQLK----DIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRAL 80 (104)
T ss_dssp HHHHSCEEEESCCTTSCHHHHH----HHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCB
T ss_pred CCCccEEEEeCCCCcCCHHHHH----HHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEE
Confidence 4567999999999999999999 9999999999999886 57889999999999999999999999999999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+|.++.++..
T Consensus 81 ~v~~a~~~~~ 90 (104)
T 1p1t_A 81 RVDNAASEKN 90 (104)
T ss_dssp EEEETTCTTH
T ss_pred EEEeCCCccc
Confidence 9999876544
No 109
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.8e-19 Score=124.89 Aligned_cols=87 Identities=15% Similarity=0.298 Sum_probs=76.1
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC------CCccceEEEEEcCHHHHHHHHHHhCCcee
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT------PKLRGQAWVVFSEVTAASNAVRQMQNFPF 77 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~------~~~~g~afV~f~~~e~A~~a~~~l~g~~~ 77 (231)
......++|||+|||..+++++|+. +.++|++||.|.+|.+.++ +.++|||||+|.+.++|.+|+..|||..|
T Consensus 10 ~r~~~~~~l~V~nLp~~~~~~~l~~-~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 88 (111)
T 2cpi_A 10 VRVVQKNLVFVVGLSQRLADPEVLK-RPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVV 88 (111)
T ss_dssp CCCCCSSCEEEEEECTTTCCHHHHH-STTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEE
T ss_pred ccccCCCEEEEECCCCCCCHHHHHH-HHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEE
Confidence 3446689999999999999999741 2389999999999999873 25679999999999999999999999999
Q ss_pred CCeeeEEEeccCcc
Q 026902 78 YDKPMRIQYAKSKS 91 (231)
Q Consensus 78 ~g~~l~v~~~~~~~ 91 (231)
.|++|+|.++.++.
T Consensus 89 ~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 89 DGRTLKASLGTTKY 102 (111)
T ss_dssp TTEEEEEESCCCCS
T ss_pred CCEEEEEEeccccc
Confidence 99999999998765
No 110
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=2.3e-19 Score=121.78 Aligned_cols=81 Identities=25% Similarity=0.460 Sum_probs=74.5
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
..++.++|||+|||..+++++|+ ++|++||.|..|.+. +++|||||+|.+.++|.+|+..|||..+.|++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~~~---~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v 83 (99)
T 2cpj_A 11 TFTQRSRLFVGNLPPDITEEEMR----KLFEKYGKAGEVFIH---KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRV 83 (99)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHH----HHTSTTCCCSEEEEE---TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHH----HHHhhcCCeEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEE
Confidence 34678999999999999999999 999999999999995 45899999999999999999999999999999999
Q ss_pred EeccCccc
Q 026902 85 QYAKSKSD 92 (231)
Q Consensus 85 ~~~~~~~~ 92 (231)
.++.++..
T Consensus 84 ~~a~~~~~ 91 (99)
T 2cpj_A 84 RFACHSAS 91 (99)
T ss_dssp EESSCCSC
T ss_pred EEcCCCCC
Confidence 99987654
No 111
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=5.4e-19 Score=123.06 Aligned_cols=83 Identities=13% Similarity=0.316 Sum_probs=75.9
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCcee----
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPF---- 77 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~---- 77 (231)
....+.++|||+|||..+++++|+ ++|+.||.|..|++++ ++.++|||||+|.+.++|.+|+..|||..+
T Consensus 20 ~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~ 95 (114)
T 1x5o_A 20 QQEQDPTNLYISNLPLSMDEQELE----NMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPP 95 (114)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHH----HTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCT
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCc
Confidence 445678999999999999999999 9999999999999987 578899999999999999999999999999
Q ss_pred ----CCeeeEEEeccCc
Q 026902 78 ----YDKPMRIQYAKSK 90 (231)
Q Consensus 78 ----~g~~l~v~~~~~~ 90 (231)
.+++|.|.|+.++
T Consensus 96 ~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 96 GVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp TSCCCSSCBEEEECCCS
T ss_pred cccCCCCceeEEccCCC
Confidence 5788999998754
No 112
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.2e-19 Score=122.97 Aligned_cols=82 Identities=22% Similarity=0.302 Sum_probs=73.5
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
.....++|||+|||..+++++|+ ++|+.||.|..+.++. ++.++|||||+|.+.++|.+|+..|||..|.|++
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~----~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 86 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEIL----DFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHH----HHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeE
Confidence 34567899999999999999999 9999999997665554 6889999999999999999999999999999999
Q ss_pred eEEEeccCc
Q 026902 82 MRIQYAKSK 90 (231)
Q Consensus 82 l~v~~~~~~ 90 (231)
|+|.++..+
T Consensus 87 l~V~~a~~~ 95 (98)
T 2cqp_A 87 VKLVLGSGP 95 (98)
T ss_dssp CEEEESSCS
T ss_pred EEEEEcCCC
Confidence 999998654
No 113
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.80 E-value=2.7e-19 Score=128.97 Aligned_cols=86 Identities=21% Similarity=0.363 Sum_probs=78.5
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
.+..+.++|||+|||..+++++|+ ++|+.||.|.+|.+++ ++.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 37 ~~~~~~~~l~V~nLp~~~~~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 112 (139)
T 1u6f_A 37 PEPDVLRNLMVNYIPTTVDEVQLR----QLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNK 112 (139)
T ss_dssp CCTTTTSEEEEESCSTTCCHHHHH----HHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCe
Confidence 345668999999999999999999 9999999999999987 477899999999999999999999999999999
Q ss_pred eeEEEeccCccch
Q 026902 81 PMRIQYAKSKSDC 93 (231)
Q Consensus 81 ~l~v~~~~~~~~~ 93 (231)
.|+|.++.++...
T Consensus 113 ~l~v~~a~~~~~~ 125 (139)
T 1u6f_A 113 RLKVALAASGHQR 125 (139)
T ss_dssp EEEEEESSCCCCC
T ss_pred EEEEEECCCCCCC
Confidence 9999999876543
No 114
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.80 E-value=2.9e-20 Score=133.31 Aligned_cols=77 Identities=25% Similarity=0.392 Sum_probs=71.4
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
...++|||+|||..+++++|+++|++||.|..+.++.+ .+|+|||+|.+.++|.+|+..|||..|.+ ++|+|.|
T Consensus 45 ~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g-~~l~V~~ 123 (135)
T 2lea_A 45 EGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDG-RELRVQM 123 (135)
T ss_dssp GGCCCEEEECCCSSCHHHHHHHHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSS-SCCEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEE
Confidence 35678999999999999999999999999999999875 36899999999999999999999999999 9999999
Q ss_pred ccC
Q 026902 229 AKK 231 (231)
Q Consensus 229 a~~ 231 (231)
|+.
T Consensus 124 a~~ 126 (135)
T 2lea_A 124 ARY 126 (135)
T ss_dssp CCC
T ss_pred CCC
Confidence 973
No 115
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.80 E-value=4.1e-19 Score=121.45 Aligned_cols=81 Identities=23% Similarity=0.419 Sum_probs=74.7
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..+.++|||+|||..+++++|+ ++|+.|| |..|.+++ ++.++|||||+|.+.++|.+|+ .|||..+.|++|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l 85 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDID----AIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSL 85 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHH----HHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEEC
T ss_pred CCCCeEEEEeCCCCCCCHHHHH----HHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEE
Confidence 4668999999999999999999 9999997 99999987 4789999999999999999999 799999999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+|.++.++..
T Consensus 86 ~V~~a~~~~~ 95 (103)
T 2dng_A 86 RVDIAEGRKQ 95 (103)
T ss_dssp EEEECCCCCC
T ss_pred EEEEecCCCC
Confidence 9999986654
No 116
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.80 E-value=3.2e-19 Score=118.62 Aligned_cols=78 Identities=19% Similarity=0.373 Sum_probs=72.9
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
..++|||+|||..+++++|+ ++|+.||.|..+.++. ++.++|||||+|.+.++|.+|+ .+||..+.|+.|+|
T Consensus 5 ~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V 79 (89)
T 3ucg_A 5 DARSIYVGNVDYGATAEELE----AHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKV 79 (89)
T ss_dssp HHTEEEEESCCTTCCHHHHH----HHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEE
T ss_pred cCCEEEEeCCCCCCCHHHHH----HHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEE
Confidence 46899999999999999999 9999999999999986 5788999999999999999999 89999999999999
Q ss_pred EeccCc
Q 026902 85 QYAKSK 90 (231)
Q Consensus 85 ~~~~~~ 90 (231)
.++.++
T Consensus 80 ~~a~~~ 85 (89)
T 3ucg_A 80 IPKRTN 85 (89)
T ss_dssp EETTTT
T ss_pred EEccCC
Confidence 998653
No 117
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.8e-19 Score=118.31 Aligned_cols=82 Identities=10% Similarity=0.128 Sum_probs=75.5
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
......++|||+|||+.+++++|+ ++|+.| .|..|.+++ ++.++|||||+|.+.++|.+|+. +||..|.|+.
T Consensus 5 ~~~~~~~~l~v~nLp~~~t~~~l~----~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~ 78 (91)
T 2dgw_A 5 SSGTTCHTVKLRGAPFNVTEKNVM----EFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRY 78 (91)
T ss_dssp CCCCCCCEEEEECCCSSCCHHHHH----HHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEE
T ss_pred CCCCCccEEEEECCCCCCCHHHHH----HHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcE
Confidence 445678999999999999999999 999999 899999987 58889999999999999999999 9999999999
Q ss_pred eEEEeccCcc
Q 026902 82 MRIQYAKSKS 91 (231)
Q Consensus 82 l~v~~~~~~~ 91 (231)
|.|.++.++.
T Consensus 79 i~v~~a~~~~ 88 (91)
T 2dgw_A 79 IEVFREKSGP 88 (91)
T ss_dssp EEEEEESSCC
T ss_pred EEEEECCcCC
Confidence 9999987653
No 118
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.80 E-value=3e-19 Score=119.98 Aligned_cols=78 Identities=22% Similarity=0.381 Sum_probs=72.5
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
..++.++|||+|||..+++++|+++|++||.|..+.++.++ +|+|||+|.+.++|.+|+..|||..|.+ ++|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v 90 (94)
T 2e5h_A 12 LAPSKSTVYVSNLPFSLTNNDLYRIFSKYGKVVKVTIMKDKDTRKSKGVAFILFLDKDSAQNCTRAINNKQLFG-RVIKA 90 (94)
T ss_dssp CCCCTTSEEEESCCTTSCHHHHHHHTTTTSCEEEEEECCCSSSCCCTTCEEEEESCHHHHHHHHHHTTTEEETT-EEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHcCCCeeCC-cEEEE
Confidence 44567889999999999999999999999999999998752 5899999999999999999999999999 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.|||
T Consensus 91 ~~ak 94 (94)
T 2e5h_A 91 SIAI 94 (94)
T ss_dssp EECC
T ss_pred EecC
Confidence 9997
No 119
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.80 E-value=6.1e-20 Score=120.03 Aligned_cols=72 Identities=18% Similarity=0.368 Sum_probs=67.0
Q ss_pred CCEEEEeCCCCcc------CHHHHHHHHHHhhccCCCeEEEEEec-CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe-
Q 026902 9 NQTIYIKNLNEKI------KKEELKRSLYCLFSQYGRIFDVVALK-TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK- 80 (231)
Q Consensus 9 ~~~v~v~nLp~~~------te~~l~~~l~~~f~~~g~v~~v~~~~-~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~- 80 (231)
+++|||+|||..+ ++++|+ ++|++||.|.+|.+++ +|.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 1 ~~~l~V~nLp~~~~~~~~~t~~~l~----~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~ 76 (81)
T 2krb_A 1 DSVIVVDNVPQVGPDRLEKLKNVIH----KIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQH 76 (81)
T ss_dssp CCEEEEESCCCCCTTTHHHHHHHHH----HHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSS
T ss_pred CCEEEEeCCCCCcHHHHHHHHHHHH----HHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCce
Confidence 4799999999999 678888 9999999999999886 788999999999999999999999999999999
Q ss_pred eeEE
Q 026902 81 PMRI 84 (231)
Q Consensus 81 ~l~v 84 (231)
+|+|
T Consensus 77 ~l~V 80 (81)
T 2krb_A 77 TFRV 80 (81)
T ss_dssp CCCC
T ss_pred eEEe
Confidence 8876
No 120
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=1.4e-19 Score=124.61 Aligned_cols=77 Identities=17% Similarity=0.276 Sum_probs=70.5
Q ss_pred CCCCCEEEecCCCCC-CCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC--CccCCCCCeEEEec
Q 026902 153 AAPNNILFIQNLPHE-TTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG--FKITPQNPMAITFA 229 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~-~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng--~~i~~~~~l~V~~a 229 (231)
..++++|||+|||.+ +++++|+++|++||.|.+|.+++. +|+|||+|.+.++|..|+..||+ ..|.| ++|+|.||
T Consensus 22 ~~p~~~l~V~NLp~~~~te~~L~~lF~~fG~V~~v~i~~~-kg~aFVef~~~~~A~~Ai~~l~~~~~~l~G-r~l~V~~a 99 (112)
T 1x4f_A 22 QELGRVIHLSNLPHSGYSDSAVLKLAEPYGKIKNYILMRM-KSQAFIEMETREDAMAMVDHCLKKALWFQG-RCVKVDLS 99 (112)
T ss_dssp SCCCCEEEEESCCCSSCCSHHHHTTTTTTSCCSEEEEETT-TTEEEEECSSHHHHHHHHHHHHHSCCCSSS-SCCEEEEE
T ss_pred CCCCCEEEEeCCCCccCCHHHHHHHHHhcCCEEEEEEecC-CCEEEEEECCHHHHHHHHHHhccCCceECC-EEEEEEEC
Confidence 557889999999998 999999999999999999999875 59999999999999999999875 45888 99999999
Q ss_pred cC
Q 026902 230 KK 231 (231)
Q Consensus 230 ~~ 231 (231)
++
T Consensus 100 ~~ 101 (112)
T 1x4f_A 100 EK 101 (112)
T ss_dssp CS
T ss_pred cc
Confidence 74
No 121
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=4.1e-19 Score=118.43 Aligned_cols=81 Identities=19% Similarity=0.361 Sum_probs=74.3
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
.....+.++|||+|||..+++++|+ ++|++||.|..|.+. ++||||+|.+.++|.+|+..|||..+.|++|
T Consensus 3 ~~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~v~~~~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l 73 (90)
T 2dnp_A 3 SGSSGNTWKIFVGNVSAACTSQELR----SLFERRGRVIECDVV-----KDYAFVHMEKEADAKAAIAQLNGKEVKGKRI 73 (90)
T ss_dssp CCSSCCSCCEEEESCCTTCCHHHHH----HHHHHHSCEEEEEEC-----SSCEEEEESCHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHH----HHHHcCCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCEECCcEE
Confidence 4456789999999999999999999 999999999999994 5699999999999999999999999999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+|.++.++..
T Consensus 74 ~v~~a~~~~~ 83 (90)
T 2dnp_A 74 NVELSTKGQK 83 (90)
T ss_dssp EEEESCCCCC
T ss_pred EEEECCCCCC
Confidence 9999976643
No 122
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.80 E-value=9.3e-20 Score=122.77 Aligned_cols=80 Identities=23% Similarity=0.302 Sum_probs=70.7
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
..++.++|||+|||..+++++|+ ++|++||.|..+.++. ++.++|||||+|.+.++|.+|+..|||..+.|++
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~ 86 (95)
T 2ek1_A 11 GKPGPTVIKVQNMPFTVSIDEIL----DFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRK 86 (95)
T ss_dssp ----CEEEEEECCCTTCCHHHHH----HHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcE
Confidence 34567999999999999999999 9999999998766665 6789999999999999999999999999999999
Q ss_pred eEEEecc
Q 026902 82 MRIQYAK 88 (231)
Q Consensus 82 l~v~~~~ 88 (231)
|+|.++.
T Consensus 87 l~v~~a~ 93 (95)
T 2ek1_A 87 VKLSGPS 93 (95)
T ss_dssp CEEECCC
T ss_pred EEEEecc
Confidence 9999875
No 123
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.80 E-value=2.9e-19 Score=126.65 Aligned_cols=85 Identities=15% Similarity=0.317 Sum_probs=77.6
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
....++++|||+|||..+|+++|+ ++|+.||.|..|.++. ++.++|||||+|.+.++|.+|+..|||..|.|+
T Consensus 17 ~~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~ 92 (126)
T 3ex7_B 17 QRSVEGWILFVTGVHEEATEEDIH----DKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQ 92 (126)
T ss_dssp CCCSSSEEEEEESCCTTCCHHHHH----HHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCCe
Confidence 345668899999999999999999 9999999999999976 578899999999999999999999999999999
Q ss_pred eeEEEeccCccc
Q 026902 81 PMRIQYAKSKSD 92 (231)
Q Consensus 81 ~l~v~~~~~~~~ 92 (231)
.|.|.++.++..
T Consensus 93 ~l~v~~a~~~~~ 104 (126)
T 3ex7_B 93 PISVDWCFVRGP 104 (126)
T ss_dssp BCEEEESEESSS
T ss_pred EEEEEEecCCCC
Confidence 999999976544
No 124
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.80 E-value=4.9e-19 Score=120.16 Aligned_cols=79 Identities=24% Similarity=0.418 Sum_probs=73.2
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
....+.++|||+|||..+++++|+++|++||.|..+.+.++ +|+|||+|.+.++|.+|+..|||..+++ ++|+|.||+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~~~-kg~afV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~a~ 87 (99)
T 2cpj_A 10 KTFTQRSRLFVGNLPPDITEEEMRKLFEKYGKAGEVFIHKD-KGFGFIRLETRTLAEIAKVELDNMPLRG-KQLRVRFAC 87 (99)
T ss_dssp CCCCCTTEEEEESCCTTCCHHHHHHHTSTTCCCSEEEEETT-TTEEEEECSSSHHHHHHHHHHTTCCBTT-BCCEEEESS
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHhhcCCeEEEEEecC-CCEEEEEECCHHHHHHHHHHhCCCEeCC-ceEEEEEcC
Confidence 34457789999999999999999999999999999999876 4899999999999999999999999999 999999997
Q ss_pred C
Q 026902 231 K 231 (231)
Q Consensus 231 ~ 231 (231)
.
T Consensus 88 ~ 88 (99)
T 2cpj_A 88 H 88 (99)
T ss_dssp C
T ss_pred C
Confidence 3
No 125
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.80 E-value=6.3e-19 Score=119.15 Aligned_cols=77 Identities=19% Similarity=0.342 Sum_probs=71.6
Q ss_pred CCCCCCEEEEeCCCC-ccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 5 DIPPNQTIYIKNLNE-KIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~-~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
..+++++|||+|||. .+++++|+ ++|+.||.|..+.+ ++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 18 ~~~~~~~l~V~nLp~~~~t~~~L~----~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 88 (97)
T 2xnq_A 18 GSHMKSRLFIGNLPLKNVSKEDLF----RIFSPYGHIMQINI-----KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLI 88 (97)
T ss_dssp -CCTTCEEEEESCCSSCCCHHHHH----HHHGGGSCEEEEEE-----CSSEEEEEESSHHHHHHHHHHHTTSEETTEECE
T ss_pred CCCCCCEEEEeCCCcccCCHHHHH----HHHHhcCCEEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 356799999999998 99999999 99999999999998 489999999999999999999999999999999
Q ss_pred EEeccCc
Q 026902 84 IQYAKSK 90 (231)
Q Consensus 84 v~~~~~~ 90 (231)
|.+++.+
T Consensus 89 V~~a~~~ 95 (97)
T 2xnq_A 89 LEVSSSN 95 (97)
T ss_dssp EEECCCC
T ss_pred EEecCCC
Confidence 9998754
No 126
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.80 E-value=5.5e-19 Score=118.26 Aligned_cols=82 Identities=21% Similarity=0.368 Sum_probs=75.0
Q ss_pred CCCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 2 ITGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 2 ~~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
+.+...+.++|||+|||..+++++|+ ++|+.||.|..|.+. ++||||+|.+.++|.+|+..|||..+.|+.
T Consensus 3 ~~~~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~v~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~ 73 (92)
T 2dgt_A 3 SGSSGKASTKLHVGNISPTCTNQELR----AKFEEYGPVIECDIV-----KDYAFVHMERAEDAVEAIRGLDNTEFQGKR 73 (92)
T ss_dssp CSCCCCSSEEEEEESCCSSCCHHHHH----HHHHTTSCCCEEEEC-----SSEEEEEESCHHHHHHHHHHHTTEEETTEE
T ss_pred CCCCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEE-----CCEEEEEECCHHHHHHHHHHhCCCeeCCcE
Confidence 34566789999999999999999999 999999999999994 569999999999999999999999999999
Q ss_pred eEEEeccCccc
Q 026902 82 MRIQYAKSKSD 92 (231)
Q Consensus 82 l~v~~~~~~~~ 92 (231)
|+|.++.++..
T Consensus 74 l~V~~a~~~~~ 84 (92)
T 2dgt_A 74 MHVQLSTSRLR 84 (92)
T ss_dssp EEEEESSCCCS
T ss_pred EEEEEccCCCC
Confidence 99999976654
No 127
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=99.80 E-value=9.8e-19 Score=119.94 Aligned_cols=80 Identities=24% Similarity=0.448 Sum_probs=73.6
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCC--CCe
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQ--NPM 224 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~--~~l 224 (231)
...++.++|||+|||..+++++|+++|++||.|..+.+++++ +|||||+|.+.++|.+|+..|||..+.+| ++|
T Consensus 10 ~~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l 89 (105)
T 2dnh_A 10 SRGGRDRKLFVGMLNKQQSEEDVLRLFQPFGVIDECTVLRGPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSL 89 (105)
T ss_dssp CSCCCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCC
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccE
Confidence 344567899999999999999999999999999999999874 58999999999999999999999999876 999
Q ss_pred EEEecc
Q 026902 225 AITFAK 230 (231)
Q Consensus 225 ~V~~a~ 230 (231)
+|.||+
T Consensus 90 ~V~~a~ 95 (105)
T 2dnh_A 90 VVKFAD 95 (105)
T ss_dssp EEEESC
T ss_pred EEEECc
Confidence 999996
No 128
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.80 E-value=8.8e-20 Score=120.35 Aligned_cols=78 Identities=23% Similarity=0.324 Sum_probs=72.6
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..++++|||+|||..+++++|+ ++|+.||.|..+.++. ++.++|||||+|.+.++|.+|+..|||..+.|+.+
T Consensus 2 ~~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~ 77 (85)
T 1x4e_A 2 SSGSSGLYIRGLQPGTTDQDLV----KLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMA 77 (85)
T ss_dssp CCCCCEEEEESCCTTCCHHHHH----TTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESC
T ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEE
Confidence 4678999999999999999999 9999999999999887 47889999999999999999999999999999999
Q ss_pred EEEec
Q 026902 83 RIQYA 87 (231)
Q Consensus 83 ~v~~~ 87 (231)
++.++
T Consensus 78 ~~~~~ 82 (85)
T 1x4e_A 78 KQSGP 82 (85)
T ss_dssp CSSCC
T ss_pred eecCC
Confidence 87664
No 129
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1.7e-19 Score=124.94 Aligned_cols=78 Identities=24% Similarity=0.247 Sum_probs=72.4
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
.++.++|||+|||..+++++|+ ++|++||.|..|.++ .++|||||+|.+.++|.+|+..|||..+.|++|.|.
T Consensus 7 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~ 79 (111)
T 1whx_A 7 GRSKTVILAKNLPAGTLAAEIQ----ETFSRFGSLGRVLLP---EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLE 79 (111)
T ss_dssp SEEEEEEEEESCCTTCCHHHHH----HHHHTTSCEEEEECC---SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEe---CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4567899999999999999999 999999999999984 578999999999999999999999999999999999
Q ss_pred eccCc
Q 026902 86 YAKSK 90 (231)
Q Consensus 86 ~~~~~ 90 (231)
|+...
T Consensus 80 ~a~~~ 84 (111)
T 1whx_A 80 WAPIG 84 (111)
T ss_dssp EEETT
T ss_pred ECCCC
Confidence 98653
No 130
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=99.79 E-value=8e-19 Score=119.11 Aligned_cols=80 Identities=25% Similarity=0.425 Sum_probs=73.5
Q ss_pred CCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeE--------EEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCC
Q 026902 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE--------VRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGF 216 (231)
Q Consensus 150 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~--------v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~ 216 (231)
....++.++|||+|||..+++++|+++|++||.|.. +.++.++ +|+|||+|.+.++|.+|+..|||.
T Consensus 7 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~G~afV~f~~~~~a~~Ai~~l~g~ 86 (99)
T 2la6_A 7 HHSHSDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGK 86 (99)
T ss_dssp CCSCCCCSEEEEECCCSSCCHHHHHHHHTTTSCBCEETTTTEESEEEEECTTTCSEEEEEEEEBSSHHHHHHHHHHHTTC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCEeeccccccccEEEEecCCCCCeeeEEEEEECCHHHHHHHHHHhCCC
Confidence 344567789999999999999999999999999999 9998863 589999999999999999999999
Q ss_pred ccCCCCCeEEEecc
Q 026902 217 KITPQNPMAITFAK 230 (231)
Q Consensus 217 ~i~~~~~l~V~~a~ 230 (231)
.+.| +.|+|.+|+
T Consensus 87 ~~~g-~~l~V~~A~ 99 (99)
T 2la6_A 87 EFSG-NPIKVSFAT 99 (99)
T ss_dssp BSSS-SBCEEEECC
T ss_pred EeCC-cEEEEEecC
Confidence 9999 999999986
No 131
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=99.79 E-value=4.3e-19 Score=116.41 Aligned_cols=74 Identities=24% Similarity=0.447 Sum_probs=69.9
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
.+|||+|||..+++++|+++|++||.|.++.+++++ +|+|||+|.+.++|.+|+..|||..++| ++|+|.||++
T Consensus 2 ~~l~V~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~a~~ 80 (83)
T 3md1_A 2 FNLFVGDLNVNVDDETLRNAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNG-RPLRINWAAK 80 (83)
T ss_dssp EEEEEECCCTTCCHHHHHHHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETT-EECEEEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCccceEEEEECCHHHHHHHHHHhcCCeeCC-cEEEEEecCc
Confidence 579999999999999999999999999999998763 6899999999999999999999999998 9999999974
No 132
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=1.1e-19 Score=123.77 Aligned_cols=78 Identities=24% Similarity=0.448 Sum_probs=72.5
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
..+.+++|||+|||..+++++|+ ++|+.||.|.++++. +++|||||+|.+.++|.+|+..|||..+.|+.|+|
T Consensus 23 ~~~~~~~l~V~nlp~~~~~~~l~----~~f~~~G~i~~~~~~---~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V 95 (101)
T 2la4_A 23 APPRVTTAYIGNIPHFATEADLI----PLFQNFGFILDFKHY---PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRT 95 (101)
T ss_dssp SCSSCCEEEEESCCTTCCHHHHH----HHHHTTSCCSEEEEE---TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCC
T ss_pred CCCCCCEEEEcCCCcccCHHHHH----HHHHhCCCEEEEEEe---cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEE
Confidence 34567999999999999999999 999999999999995 67999999999999999999999999999999999
Q ss_pred EeccC
Q 026902 85 QYAKS 89 (231)
Q Consensus 85 ~~~~~ 89 (231)
.++++
T Consensus 96 ~~a~~ 100 (101)
T 2la4_A 96 GWGKE 100 (101)
T ss_dssp CBCCC
T ss_pred EeccC
Confidence 99865
No 133
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=118.00 Aligned_cols=77 Identities=13% Similarity=0.299 Sum_probs=71.7
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHh-cCCccCCCCCeEEEecc
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQAL-QGFKITPQNPMAITFAK 230 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~l-ng~~i~~~~~l~V~~a~ 230 (231)
...+.++|||+|||..+++++|+++|++||.|..+.+.++ +|+|||+|.+.++|..|+..| ||..+++ ++|+|.|||
T Consensus 8 ~~~~~~~l~V~~l~~~~t~~~l~~~f~~~G~i~~~~~~~~-kg~afV~f~~~~~A~~a~~~l~~~~~~~g-~~l~v~~ak 85 (85)
T 2ytc_A 8 EDKTITTLYVGGLGDTITETDLRNHFYQFGEIRTITVVQR-QQCAFIQFATRQAAEVAAEKSFNKLIVNG-RRLNVKWGR 85 (85)
T ss_dssp SCSSCCCEEEECCTTTSCHHHHHHHHHTTSCEEEEEEEGG-GTEEEEEESSHHHHHHHHHTTTTTCEETT-EECCEEECC
T ss_pred CCCCccEEEEcCCCCCCCHHHHHHHHHhCCCEeEEEEECC-CCEEEEEECCHHHHHHHHHHhcCCeeECC-CEEEEEecC
Confidence 3456788999999999999999999999999999999986 489999999999999999999 9999999 999999997
No 134
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.79 E-value=4.5e-19 Score=122.47 Aligned_cols=84 Identities=18% Similarity=0.309 Sum_probs=72.3
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
.+..+.++|||+|||..+++++|+ ++|+.||.|.+|.+++ ++.++|||||+|.+.++|.+|+..+ +..+.|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~ 94 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLR----EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSK 94 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHH----HHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHH----HHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCE
Confidence 345678999999999999999999 9999999999999987 4889999999999999999999965 6999999
Q ss_pred eeEEEeccCccc
Q 026902 81 PMRIQYAKSKSD 92 (231)
Q Consensus 81 ~l~v~~~~~~~~ 92 (231)
.|.|.++.++..
T Consensus 95 ~l~V~~a~~~~~ 106 (109)
T 2rs2_A 95 TIDPKVAFPRRA 106 (109)
T ss_dssp EEEEEECCCCCC
T ss_pred EEEEEEccCCCC
Confidence 999999876543
No 135
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=99.79 E-value=3.4e-19 Score=117.95 Aligned_cols=76 Identities=18% Similarity=0.365 Sum_probs=70.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
+.++|||+|||..+++++|+++|++||.|.++.++.++ +|+|||+|.+.++|.+|+..|||..+++ +.|+|.||
T Consensus 5 ~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a 83 (87)
T 3bs9_A 5 SHFHVFVGDLSPEITTAAIAAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-RQIRTNWA 83 (87)
T ss_dssp -CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEEE
T ss_pred CceEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEec
Confidence 56789999999999999999999999999999999863 6899999999999999999999999999 99999999
Q ss_pred cC
Q 026902 230 KK 231 (231)
Q Consensus 230 ~~ 231 (231)
+.
T Consensus 84 ~~ 85 (87)
T 3bs9_A 84 TR 85 (87)
T ss_dssp C-
T ss_pred CC
Confidence 74
No 136
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=7.4e-19 Score=118.82 Aligned_cols=77 Identities=19% Similarity=0.425 Sum_probs=72.0
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccC--CCCCeEEEec
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKIT--PQNPMAITFA 229 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~--~~~~l~V~~a 229 (231)
..++.++|||+|||..+++++|+++|++||.|..+.+.++ +|+|||+|.+.++|.+|+..|||..+. + ++|+|.||
T Consensus 13 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~~~~~-~g~afV~f~~~~~A~~A~~~l~g~~~~~~g-~~l~V~~a 90 (97)
T 1why_A 13 KANPTTRLWVGGLGPNTSLAALAREFDRFGSIRTIDHVKG-DSFAYIQYESLDAAQAACAKMRGFPLGGPD-RRLRVDFA 90 (97)
T ss_dssp CCCCCSCEEEECCCSSCCHHHHHHHHHTTSCEEEEEECSS-SCCEEEEESSHHHHHHHHHHHTTCBCSSSS-CBCEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeCC-CCEEEEEECCHHHHHHHHHHHCCCEeCCCC-cEEEEEEC
Confidence 3446788999999999999999999999999999999887 589999999999999999999999999 7 99999999
Q ss_pred c
Q 026902 230 K 230 (231)
Q Consensus 230 ~ 230 (231)
+
T Consensus 91 ~ 91 (97)
T 1why_A 91 K 91 (97)
T ss_dssp C
T ss_pred C
Confidence 7
No 137
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=99.79 E-value=6.6e-19 Score=122.83 Aligned_cols=81 Identities=22% Similarity=0.430 Sum_probs=73.9
Q ss_pred CCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCe
Q 026902 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPM 224 (231)
Q Consensus 150 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l 224 (231)
....+..++|||+|||..+++++|+++|++||.|..+.+++++ +|||||+|.+.++|.+|+..|||..|.+ ++|
T Consensus 19 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l 97 (115)
T 2cpz_A 19 QKEGPEGANLFIYHLPQEFGDQDLLQMFMPFGNVVSAKVFIDKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGM-KRL 97 (115)
T ss_dssp CCCCSTTCCEEEESCCSSCCHHHHHHHHGGGSCCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT-EEC
T ss_pred CcCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCCcCccEEEEECCHHHHHHHHHHcCCCEECC-EEE
Confidence 3445567889999999999999999999999999999999864 4899999999999999999999999999 999
Q ss_pred EEEeccC
Q 026902 225 AITFAKK 231 (231)
Q Consensus 225 ~V~~a~~ 231 (231)
+|.||+.
T Consensus 98 ~V~~a~~ 104 (115)
T 2cpz_A 98 KVQLKRS 104 (115)
T ss_dssp EEECCCC
T ss_pred EEEEcCC
Confidence 9999873
No 138
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1.2e-18 Score=119.09 Aligned_cols=80 Identities=23% Similarity=0.397 Sum_probs=73.7
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK---PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~---~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
......++|||+|||..+++++|+++|++||.|..+.++.++ +|+|||+|.+.++|.+|+..|||..|++ ++|+|.
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~ 88 (103)
T 2cq3_A 10 ESKSTPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG-RKIEVN 88 (103)
T ss_dssp CCSCCCCEEEEESCCTTCCHHHHHHHGGGTSCEEEEEEECCTTTTCCEEEEEESCHHHHHHHHHHHTTCEETT-EECEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcEEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEE
Confidence 344567899999999999999999999999999999999863 6899999999999999999999999999 999999
Q ss_pred eccC
Q 026902 228 FAKK 231 (231)
Q Consensus 228 ~a~~ 231 (231)
||+.
T Consensus 89 ~a~~ 92 (103)
T 2cq3_A 89 NATA 92 (103)
T ss_dssp ECCS
T ss_pred Eccc
Confidence 9863
No 139
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=120.54 Aligned_cols=80 Identities=18% Similarity=0.231 Sum_probs=73.9
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCC-----
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD----- 79 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g----- 79 (231)
.....++|||+|||+++++++|+ ++|+.||.|..|.++.+ |||||+|.+.++|.+|+..|||..|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~ 82 (108)
T 1x4c_A 11 SRRSENRVVVSGLPPSGSWQDLK----DHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGET 82 (108)
T ss_dssp CCSCCCEEEEESCCSSCCHHHHH----HHHGGGSCEEEEEEETT----TEEEEEESSHHHHHHHHHHSSSEEEECTTSCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCEeEEEEecC----CEEEEEECCHHHHHHHHHHHCcCCccCCcCcc
Confidence 34568999999999999999999 99999999999999765 999999999999999999999999999
Q ss_pred eeeEEEeccCccc
Q 026902 80 KPMRIQYAKSKSD 92 (231)
Q Consensus 80 ~~l~v~~~~~~~~ 92 (231)
+.|+|.++.++..
T Consensus 83 ~~i~V~~a~~~~~ 95 (108)
T 1x4c_A 83 AYIRVKVDGPRSP 95 (108)
T ss_dssp EEEEEEESSCCSC
T ss_pred eEEEEEeCCCCCC
Confidence 9999999987654
No 140
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.8e-19 Score=119.22 Aligned_cols=79 Identities=23% Similarity=0.322 Sum_probs=72.9
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
...+.++|||+|||..+++++|+++|++||.|..+.+++++ +|+|||+|.+.++|.+|+..|||..+.+ ++|+|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v 89 (95)
T 2cqc_A 11 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG-RRIRV 89 (95)
T ss_dssp SCCGGGCEEEESCCSSCCHHHHHHHHHTTSCEEEEEEEECSSSSSEEEEEEEEESSHHHHHHHHHHHTTEEETT-EEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeeEEEEEEcCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-EEEEE
Confidence 44567889999999999999999999999999999998753 5799999999999999999999999999 99999
Q ss_pred EeccC
Q 026902 227 TFAKK 231 (231)
Q Consensus 227 ~~a~~ 231 (231)
.||+.
T Consensus 90 ~~a~~ 94 (95)
T 2cqc_A 90 SGPSS 94 (95)
T ss_dssp ECCSC
T ss_pred EecCC
Confidence 99974
No 141
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.79 E-value=9.3e-19 Score=120.44 Aligned_cols=79 Identities=19% Similarity=0.412 Sum_probs=73.2
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC------CcEEEEEecCHHHHHHHHHHh-cCCccCCCCCe
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK------PGIAFVEFEDDVQSSMAMQAL-QGFKITPQNPM 224 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~------~g~afV~f~~~~~A~~A~~~l-ng~~i~~~~~l 224 (231)
.....++|||+|||..+++++|+++|++||.|..|.++++. +|||||+|.+.++|.+|+..| ||..|.+ ++|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g-~~l 89 (107)
T 2cph_A 11 KKQTTSKILVRNIPFQANQREIRELFSTFGELKTVRLPKKMTGTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYG-RRL 89 (107)
T ss_dssp CSSCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCCCCSSSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSS-CBC
T ss_pred cCCCCCEEEEeCCCCcCCHHHHHHHHHccCCeEEEEEecCCCCCCCcCceEEEEECCHHHHHHHHHHhccCCeECC-CEE
Confidence 44567889999999999999999999999999999998872 799999999999999999999 9999999 999
Q ss_pred EEEeccC
Q 026902 225 AITFAKK 231 (231)
Q Consensus 225 ~V~~a~~ 231 (231)
+|.||+.
T Consensus 90 ~v~~a~~ 96 (107)
T 2cph_A 90 VLEWADS 96 (107)
T ss_dssp EEEECCC
T ss_pred EEEeCCC
Confidence 9999973
No 142
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.79 E-value=2.7e-19 Score=131.25 Aligned_cols=79 Identities=10% Similarity=0.177 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCC--CeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYG--RIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g--~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..++|||+|||+.+|+++|+ ++|+.|| .|.+|+++. +|.++|||||+|.+.++|.+|+..|||..|.|+.|
T Consensus 54 ~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l 129 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLI----QVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKV 129 (156)
T ss_dssp --CEEEEECCCTTCCHHHHH----HHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEEC
T ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEe
Confidence 45899999999999999999 9999999 999999986 68899999999999999999999999999999999
Q ss_pred EEEeccCc
Q 026902 83 RIQYAKSK 90 (231)
Q Consensus 83 ~v~~~~~~ 90 (231)
.|.++.++
T Consensus 130 ~V~~a~~~ 137 (156)
T 3n9u_C 130 DVRPATRQ 137 (156)
T ss_dssp EEEECCHH
T ss_pred EEEEcCCC
Confidence 99998643
No 143
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=1e-18 Score=120.67 Aligned_cols=80 Identities=21% Similarity=0.469 Sum_probs=73.4
Q ss_pred CCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC--CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK--PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 150 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~--~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
.....+.++|||+|||..+++++|+++|++||.|..+.+..++ +|||||+|.+.++|.+|+..|||..|++ ++|+|.
T Consensus 16 ~~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~ 94 (109)
T 1x4a_A 16 GPAGNNDCRIYVGNLPPDIRTKDIEDVFYKYGAIRDIDLKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDG-YRLRVE 94 (109)
T ss_dssp CCCCCCSSEEEEESCCTTCCHHHHHHHHGGGSCEEEEEECCSSSSSCCEEEEESCHHHHHHHHHHHTTCEETT-EECEEE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEE
Confidence 3345567899999999999999999999999999999998753 6899999999999999999999999999 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
||+
T Consensus 95 ~a~ 97 (109)
T 1x4a_A 95 FPR 97 (109)
T ss_dssp CCC
T ss_pred Ecc
Confidence 986
No 144
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.2e-18 Score=117.33 Aligned_cols=76 Identities=21% Similarity=0.478 Sum_probs=71.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
+.++|||+|||..+++++|+++|++||.|..+.+.+++ +|+|||+|.+.++|.+|+..|||..|.+ ++|+|.||
T Consensus 4 ~~~~l~v~nlp~~~t~~~l~~~f~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a 82 (95)
T 2dnz_A 4 GSSGLYVGSLHFNITEDMLRGIFEPFGKIDNIVLMKDSDTGRSKGYGFITFSDSECARRALEQLNGFELAG-RPMRVGHV 82 (95)
T ss_dssp CCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEEEECCSSSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSS-SCCEEEES
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEEc
Confidence 66789999999999999999999999999999998863 6899999999999999999999999999 99999999
Q ss_pred cC
Q 026902 230 KK 231 (231)
Q Consensus 230 ~~ 231 (231)
+.
T Consensus 83 ~~ 84 (95)
T 2dnz_A 83 TE 84 (95)
T ss_dssp SC
T ss_pred cc
Confidence 63
No 145
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.79 E-value=1.1e-19 Score=129.80 Aligned_cols=83 Identities=23% Similarity=0.356 Sum_probs=75.7
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEE--EEEec---CCCccceEEEEEcCHHHHHHHHHHhCCc----e
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFD--VVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNF----P 76 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~--v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~----~ 76 (231)
..+.++|||+|||+.+|+++|+ ++|+.||.|.. |++++ ++.++|||||+|.+. +|.+|+..|||. .
T Consensus 20 ~~~~~~lfV~nL~~~~te~~L~----~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~ 94 (131)
T 2m2b_A 20 ENANDTIILRNLNPHSTMDSIL----GALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLT 94 (131)
T ss_dssp SCCCCEEEECSCCTTCCSHHHH----HHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCcc
Confidence 4568999999999999999999 99999999966 88887 688999999999999 999999999999 9
Q ss_pred eCCeeeEEEeccCccch
Q 026902 77 FYDKPMRIQYAKSKSDC 93 (231)
Q Consensus 77 ~~g~~l~v~~~~~~~~~ 93 (231)
+.|++|+|.++.++...
T Consensus 95 ~~gr~l~V~~a~~~~~~ 111 (131)
T 2m2b_A 95 IDGKTINVEFAKGSKRD 111 (131)
T ss_dssp GGGCCCCCEECCCSCCC
T ss_pred CCCEEEEEEECCCCCCC
Confidence 99999999999876443
No 146
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=99.79 E-value=5.4e-19 Score=119.25 Aligned_cols=76 Identities=20% Similarity=0.419 Sum_probs=71.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
++++|||+|||..+++++|+++|++||.|.++.++.++ +|+|||+|.+.++|.+|+..|||..++| +.|+|.||
T Consensus 1 P~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a 79 (96)
T 2x1f_A 1 PSRVVYLGSIPYDQTEEQILDLCSNVGPVINLKMMFDPQTGRSKGYAFIEFRDLESSASAVRNLNGYQLGS-RFLKCGYS 79 (96)
T ss_dssp CCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTCCBCSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEEC
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEEc
Confidence 46789999999999999999999999999999998763 6899999999999999999999999999 99999999
Q ss_pred cC
Q 026902 230 KK 231 (231)
Q Consensus 230 ~~ 231 (231)
+.
T Consensus 80 ~~ 81 (96)
T 2x1f_A 80 SN 81 (96)
T ss_dssp SC
T ss_pred CC
Confidence 63
No 147
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.79 E-value=8.5e-19 Score=119.85 Aligned_cols=81 Identities=23% Similarity=0.423 Sum_probs=74.0
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
....+.++|||+|||..+|+++|+ ++|+.||.|..|.++ ++||||+|.+.++|.+|+..|||..|.|++|+
T Consensus 6 ~~~~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~i~~v~~~-----~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 76 (103)
T 2dgu_A 6 SGMAKVKVLFVRNLANTVTEEILE----KAFSQFGKLERVKKL-----KDYAFIHFDERDGAVKAMEEMNGKDLEGENIE 76 (103)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHH----HHHHHHSCEEEEEEC-----SSCEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEE-----CCEEEEEeCCHHHHHHHHHHHCCCccCCCEEE
Confidence 345678999999999999999999 999999999999984 67999999999999999999999999999999
Q ss_pred EEeccCccch
Q 026902 84 IQYAKSKSDC 93 (231)
Q Consensus 84 v~~~~~~~~~ 93 (231)
|.++.++...
T Consensus 77 v~~a~~~~~~ 86 (103)
T 2dgu_A 77 IVFAKPPDQK 86 (103)
T ss_dssp EEECCCCCCC
T ss_pred EEEcCCCccc
Confidence 9999876543
No 148
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.79 E-value=1.8e-19 Score=122.52 Aligned_cols=80 Identities=19% Similarity=0.351 Sum_probs=71.3
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec----CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK----TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~----~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
....++|||+|||.++++++|+ ++|+.|| |.+|.+++ ++.++|||||+|.+.++|.+|+ .|||..|.|+.
T Consensus 16 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~ 89 (100)
T 2j76_E 16 KSPPYTAFLGNLPYDVTEESIK----EFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRR 89 (100)
T ss_dssp ----CEEEESCCSSCCSSSHHH----HHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBC
T ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeE
Confidence 4568999999999999999999 9999999 99999986 4778999999999999999999 79999999999
Q ss_pred eEEEeccCcc
Q 026902 82 MRIQYAKSKS 91 (231)
Q Consensus 82 l~v~~~~~~~ 91 (231)
|+|.++.++.
T Consensus 90 l~V~~a~~~~ 99 (100)
T 2j76_E 90 IRVDVADQAQ 99 (100)
T ss_dssp CCCEECCCSC
T ss_pred EEEEeccCCC
Confidence 9999987653
No 149
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=5.1e-19 Score=120.52 Aligned_cols=84 Identities=18% Similarity=0.240 Sum_probs=73.4
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
+...+.++|||+|||..+++++|+ ++|++||.|. +....++.++|||||+|.+.++|.+|+..|||..|.|++|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~g~v~-~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 84 (101)
T 2fc9_A 10 TWSGESKTLVLSNLSYSATEETLQ----EVFEKATFIK-VPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIR 84 (101)
T ss_dssp CCSCCCSEEEEESCCTTCCHHHHH----HHCSSCSEEE-CCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHH----HHHHhCCEEE-EEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEE
Confidence 345678999999999999999999 9999999873 21223688999999999999999999999999999999999
Q ss_pred EEeccCccc
Q 026902 84 IQYAKSKSD 92 (231)
Q Consensus 84 v~~~~~~~~ 92 (231)
|.++.++..
T Consensus 85 v~~a~~~~~ 93 (101)
T 2fc9_A 85 LELQGPRGS 93 (101)
T ss_dssp EEECSSCCC
T ss_pred EEEcCCCCC
Confidence 999976643
No 150
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=1e-18 Score=116.50 Aligned_cols=75 Identities=29% Similarity=0.453 Sum_probs=70.4
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
..+.++|||+|||..+++++|+++|++||.|..+.+. +|+|||+|.+.++|.+|+..|||..+++ ++|+|.|++.
T Consensus 5 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a~~ 79 (90)
T 2dnq_A 5 SSGMVKLFIGNLPREATEQEIRSLFEQYGKVLECDII---KNYGFVHIEDKTAAEDAIRNLHHYKLHG-VNINVEASKN 79 (90)
T ss_dssp SSCCEEEEEESCCSSCCHHHHHHHHHTSSCEEEEEEE---TTEEEEEESSHHHHHHHHHHHTTCBCSS-CBCEEECSSC
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEE---CCEEEEEECCHHHHHHHHHHhcCCccCC-cEEEEEECCC
Confidence 3467889999999999999999999999999999997 5899999999999999999999999999 9999999863
No 151
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.79 E-value=3.5e-19 Score=122.92 Aligned_cols=81 Identities=16% Similarity=0.144 Sum_probs=72.4
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCC-CeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYG-RIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g-~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
..+...+|||+|||+++++++|+ ++|++|| .|..+.+.. +.++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 24 ~p~~~~~l~VgnLp~~~te~dL~----~~F~~~G~~v~~v~i~~-~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~ 98 (111)
T 2jvr_A 24 LPAKRYRITMKNLPEGCSWQDLK----DLARENSLETTFSSVNT-RDFDGTGALEFPSEEILVEALERLNNIEFRGSVIT 98 (111)
T ss_dssp -CCCCEEEEEECSSCCCCHHHHH----HHHHHHTCCCSEEECSS-CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHH----HHHHHhCCeeEEEEEEc-CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 34567899999999999999999 9999999 899988853 35899999999999999999999999999999999
Q ss_pred EEeccCc
Q 026902 84 IQYAKSK 90 (231)
Q Consensus 84 v~~~~~~ 90 (231)
|.++..+
T Consensus 99 V~~a~~~ 105 (111)
T 2jvr_A 99 VERDDNP 105 (111)
T ss_dssp EEESCC-
T ss_pred EEECCCC
Confidence 9998643
No 152
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.7e-19 Score=121.30 Aligned_cols=81 Identities=20% Similarity=0.413 Sum_probs=74.8
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
+....++|||+|||..+++++|+ ++|+.||.|..|.+.++ +|||||+|.+.++|.+|+..|||..+.|++|+|
T Consensus 21 ~~~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~i~~v~i~~~---~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v 93 (109)
T 1x4g_A 21 SSPKNCTVYCGGIASGLTDQLMR----QTFSPFGQIMEIRVFPE---KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKC 93 (109)
T ss_dssp SCSSCCEEEEECCSSCCCHHHHH----HHHHHHSCEEEEEEETT---TTEEEEEESSHHHHHHHHHHHTTCEETTEECEE
T ss_pred CCCCCcEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEeCC---CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEE
Confidence 34678999999999999999999 99999999999999655 899999999999999999999999999999999
Q ss_pred EeccCccc
Q 026902 85 QYAKSKSD 92 (231)
Q Consensus 85 ~~~~~~~~ 92 (231)
.++.++..
T Consensus 94 ~~a~~~~~ 101 (109)
T 1x4g_A 94 YWGKESPD 101 (109)
T ss_dssp ECCCCCCS
T ss_pred EecCCCCC
Confidence 99987654
No 153
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=99.79 E-value=4.7e-20 Score=123.24 Aligned_cols=74 Identities=24% Similarity=0.405 Sum_probs=67.6
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCC-CeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHh-cCCccCCCCCeEEEe
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYP-GFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQAL-QGFKITPQNPMAITF 228 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~l-ng~~i~~~~~l~V~~ 228 (231)
+++|||+|||.++|+++|+++|++|| .|.+|.++++ ++|||||+|.+.++|.+|+..+ |+..++| ++|+|+|
T Consensus 1 S~~i~v~nLp~~~te~~l~~~F~~~G~~v~~v~i~~d~~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~g-r~i~V~~ 79 (91)
T 2lxi_A 1 SNIVMLRMLPQAATEDDIRGQLQSHGVQAREVRLMRNKSSGQSRGFAFVEFSHLQDATRWMEANQHSLNILG-QKVSMHY 79 (91)
T ss_dssp CCEEEEETCCSSCCHHHHHHHHHHHTCCCSBCCSSSCSSSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETT-EEEEEEC
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHhCCEeEEEEEEecCCCCCcCceEEEEecCHHHHHHHHHhcCCCeEECC-EEEEEEE
Confidence 46899999999999999999999999 7999999875 3699999999999999999987 5678998 9999999
Q ss_pred cc
Q 026902 229 AK 230 (231)
Q Consensus 229 a~ 230 (231)
|+
T Consensus 80 a~ 81 (91)
T 2lxi_A 80 SD 81 (91)
T ss_dssp CC
T ss_pred cC
Confidence 86
No 154
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.79 E-value=6.2e-19 Score=121.53 Aligned_cols=80 Identities=23% Similarity=0.487 Sum_probs=72.6
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
....++++|||+|||..+++++|+ ++|++||.|..|.+. +|||||+|.+.++|.+|+..|||..+.|++|.
T Consensus 26 ~~~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~i~-----kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 96 (108)
T 2jvo_A 26 EGELSNTRLFVRPFPLDVQESELN----EIFGPFGPMKEVKIL-----NGFAFVEFEEAESAAKAIEEVHGKSFANQPLE 96 (108)
T ss_dssp --CCSCSEEEECSSCTTCCHHHHH----HHHTTTSCCCEEEEE-----TTEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEECCCCCCCHHHHH----HHHHhcCCEEEEEEE-----CCEEEEEECCHHHHHHHHHHcCCCEECCeEEE
Confidence 345678999999999999999999 999999999999995 89999999999999999999999999999999
Q ss_pred EEeccCccc
Q 026902 84 IQYAKSKSD 92 (231)
Q Consensus 84 v~~~~~~~~ 92 (231)
|.++.++..
T Consensus 97 V~~a~~~~~ 105 (108)
T 2jvo_A 97 VVYSKLPAK 105 (108)
T ss_dssp EESCSCCC-
T ss_pred EEEecCCCC
Confidence 999876543
No 155
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=4.2e-19 Score=119.84 Aligned_cols=76 Identities=17% Similarity=0.194 Sum_probs=71.3
Q ss_pred CCCEEEecCCCCCCCHHHHH----HHhccCCCeeEEEEeeCC--CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 155 PNNILFIQNLPHETTSSMLE----MLFQQYPGFKEVRMIEAK--PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~----~~f~~~g~v~~v~~~~~~--~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
...+|||+|||..+++++|+ ++|++||.|.++.+++++ +|||||+|.+.++|.+|+..|||..+++ ++|+|++
T Consensus 8 ~~~~l~V~nL~~~~~~~~l~~~l~~~F~~~G~v~~v~i~~~~~~rg~afV~f~~~~~A~~Ai~~l~g~~~~g-r~l~V~~ 86 (96)
T 2dgx_A 8 NGADVQVSNIDYRLSRKELQQLLQEAFARHGKVKSVELSPHTDYQLKAVVQMENLQDAIGAVNSLHRYKIGS-KKILVSL 86 (96)
T ss_dssp SCEEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECSCCSTTCCEEEEESSHHHHHHHHHHHTTEEETT-EEEEEEE
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHHhccccCcEEEEEEEeCCCCCeEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEE
Confidence 56789999999999999999 999999999999999763 7899999999999999999999999999 9999999
Q ss_pred ccC
Q 026902 229 AKK 231 (231)
Q Consensus 229 a~~ 231 (231)
|+.
T Consensus 87 a~~ 89 (96)
T 2dgx_A 87 ATG 89 (96)
T ss_dssp CCC
T ss_pred cCC
Confidence 973
No 156
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.79 E-value=8.5e-19 Score=123.91 Aligned_cols=84 Identities=23% Similarity=0.387 Sum_probs=76.9
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
...++++|||+|||..+++++|+ ++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 106 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQ----ELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPM 106 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHH----HHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEE
Confidence 34567899999999999999999 9999999999999987 57889999999999999999999999999999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+|.++.....
T Consensus 107 ~V~~a~~~~~ 116 (124)
T 2kt5_A 107 DIQLVASQID 116 (124)
T ss_dssp EEEEECCTTC
T ss_pred EEEEeCCCCC
Confidence 9999976543
No 157
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.79 E-value=8.6e-19 Score=119.57 Aligned_cols=85 Identities=25% Similarity=0.325 Sum_probs=74.0
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
....+.++|||+|||..+++++|+ ++|+.|+.|..+.-..++.++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~~~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLK----ESFDGSVRARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVT 85 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHH----HTSTTCSEEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHH----HHhcCCeEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEE
Confidence 345678999999999999999999 9999987554443333788999999999999999999999999999999999
Q ss_pred EEeccCccc
Q 026902 84 IQYAKSKSD 92 (231)
Q Consensus 84 v~~~~~~~~ 92 (231)
|.+++++..
T Consensus 86 V~~a~~~~~ 94 (102)
T 2fc8_A 86 LDWAKPKGE 94 (102)
T ss_dssp EEECCCCCS
T ss_pred EEEecCCCC
Confidence 999987655
No 158
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.79 E-value=3.9e-19 Score=119.96 Aligned_cols=80 Identities=23% Similarity=0.427 Sum_probs=71.6
Q ss_pred CCCCCCCEEEEeCCCC-ccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 4 GDIPPNQTIYIKNLNE-KIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~-~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
.+.+++++|||+|||. .+++++|+ ++|+.||.|..|.+ ++|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 5 ~~~~~~~~l~V~nlp~~~~t~~~l~----~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l 75 (96)
T 2kvi_A 5 HNIPPKSRLFIGNLPLKNVSKEDLF----RIFSPYGHIMQINI-----KNAFGFIQFDNPQSVRDAIECESQEMNFGKKL 75 (96)
T ss_dssp ----CCEEEEEESSTTSCCCHHHHH----HHHTTTCCCCEEEE-----ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTB
T ss_pred ccCCCCCEEEEeCCCcccCCHHHHH----HHHHhcCCEEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEE
Confidence 3457899999999998 99999999 99999999999998 48999999999999999999999999999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+|.++.++..
T Consensus 76 ~V~~a~~~~~ 85 (96)
T 2kvi_A 76 ILEVSSSNAR 85 (96)
T ss_dssp CEEEEECCCC
T ss_pred EEEEcCcCCC
Confidence 9999976544
No 159
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=7.7e-19 Score=120.29 Aligned_cols=82 Identities=17% Similarity=0.208 Sum_probs=74.1
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEE-EEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFD-VVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~-v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
+....++|||+|||+++++++|+ ++|+.||.|.. |.++. +++++|||||+|.+.++|.+|+.. |+..+.||.
T Consensus 11 ~~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~ 85 (104)
T 1wg5_A 11 DTANDGFVRLRGLPFGCSKEEIV----QFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRY 85 (104)
T ss_dssp SCSCCCEEEEESCCTTCCHHHHH----HHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcE
Confidence 34568999999999999999999 99999999987 77776 688999999999999999999996 999999999
Q ss_pred eEEEeccCcc
Q 026902 82 MRIQYAKSKS 91 (231)
Q Consensus 82 l~v~~~~~~~ 91 (231)
|.|.++..+.
T Consensus 86 i~v~~~~~~~ 95 (104)
T 1wg5_A 86 IEIFKSSRAE 95 (104)
T ss_dssp CEEEEECTTT
T ss_pred EEEEECCHHH
Confidence 9999986543
No 160
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.79 E-value=4.1e-19 Score=124.43 Aligned_cols=81 Identities=10% Similarity=0.099 Sum_probs=73.9
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCC---eEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeC
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGR---IFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFY 78 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~---v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~ 78 (231)
......++|||+|||+++|+++|+ ++|+.||. |..|+++. +++++|||||+|.+.++|.+|+. +|+..|.
T Consensus 12 ~~~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~ 86 (118)
T 2db1_A 12 PEGGEGYVVKLRGLPWSCSIEDVQ----NFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMG 86 (118)
T ss_dssp SCBCCCCEEEEESCCTTCCHHHHH----HHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEET
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHH----HHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeEC
Confidence 344568999999999999999999 99999998 88888886 58899999999999999999999 9999999
Q ss_pred CeeeEEEeccC
Q 026902 79 DKPMRIQYAKS 89 (231)
Q Consensus 79 g~~l~v~~~~~ 89 (231)
|+.|+|.++..
T Consensus 87 gr~i~V~~a~~ 97 (118)
T 2db1_A 87 HRYIEVFKSHR 97 (118)
T ss_dssp TEEEEEEEECH
T ss_pred CeEEEEEECCH
Confidence 99999999853
No 161
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=9.7e-19 Score=119.54 Aligned_cols=78 Identities=26% Similarity=0.422 Sum_probs=72.9
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA---KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~---~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
...+.++|||+|||..+++++|+++|++||.|..|.++++ .+|||||+|.+.++|.+|+..|||..|.+ ++|+|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~ 89 (103)
T 2cqi_A 11 DDGQPRTLYVGNLSRDVTEVLILQLFSQIGPCKSCKMITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILG-KEVKVNW 89 (103)
T ss_dssp CSCCCCEEEEESCCTTCCHHHHHHHHHHHSCEEEEEEECCCCSSCCEEEEEESSHHHHHHHHHHHTTEEETT-EEEEEEE
T ss_pred CCCCCCEEEEeCCCccCCHHHHHHHHHhcCCEeEEEEEecCCCCCCEEEEEECCHHHHHHHHHHhCCCCcCC-CeEEEEE
Confidence 4456789999999999999999999999999999999985 46899999999999999999999999998 9999999
Q ss_pred cc
Q 026902 229 AK 230 (231)
Q Consensus 229 a~ 230 (231)
|+
T Consensus 90 a~ 91 (103)
T 2cqi_A 90 AT 91 (103)
T ss_dssp CC
T ss_pred CC
Confidence 86
No 162
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.79 E-value=5.7e-19 Score=121.92 Aligned_cols=84 Identities=21% Similarity=0.361 Sum_probs=76.3
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCC-eEEEEEe-c---CCCccceEEEEEcCHHHHHHHHHHhC--Ccee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGR-IFDVVAL-K---TPKLRGQAWVVFSEVTAASNAVRQMQ--NFPF 77 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~-v~~v~~~-~---~~~~~g~afV~f~~~e~A~~a~~~l~--g~~~ 77 (231)
...+.++|||+|||..+++++|+ ++|+.||. |..|.++ . ++.++|||||+|.+.++|.+|+..|+ +..+
T Consensus 4 ~s~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~ 79 (109)
T 2dis_A 4 GSSGNCRLFIGGIPKMKKREEIL----EEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQL 79 (109)
T ss_dssp CCCCSEEEEEECCCTTSCHHHHH----HHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCB
T ss_pred cccCCCEEEEeCCCCcCCHHHHH----HHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCcee
Confidence 35678999999999999999999 99999998 9999998 3 46899999999999999999999996 5999
Q ss_pred CCeeeEEEeccCccc
Q 026902 78 YDKPMRIQYAKSKSD 92 (231)
Q Consensus 78 ~g~~l~v~~~~~~~~ 92 (231)
.|+.|+|.++.++..
T Consensus 80 ~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 80 WGHQIAVDWAEPEID 94 (109)
T ss_dssp TTBCCEEEESCSSCS
T ss_pred cCCeEEEEEcCCCCC
Confidence 999999999987654
No 163
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=99.79 E-value=7.8e-19 Score=123.01 Aligned_cols=80 Identities=24% Similarity=0.422 Sum_probs=73.1
Q ss_pred CCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCe
Q 026902 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPM 224 (231)
Q Consensus 150 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l 224 (231)
.......++|||+|||..+++++|+++|++||.|..+.+++++ +|||||+|.+.++|.+|+..|||..|++ ++|
T Consensus 34 ~~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l 112 (118)
T 2khc_A 34 QIEGPEGCNLFIYHLPQEFTDTDLASTFLPFGNVISAKVFIDKQTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGT-KRL 112 (118)
T ss_dssp SCCCCCSEEEEEECSCTTCCHHHHHHHTTTSCEEEEEEECCCSSSSCCCCEEEEEEESSHHHHHHHHHCCCCEETT-EEC
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCcCcEEEEEECCHHHHHHHHHHcCCCEECC-EEE
Confidence 3455667899999999999999999999999999999998753 6899999999999999999999999999 999
Q ss_pred EEEecc
Q 026902 225 AITFAK 230 (231)
Q Consensus 225 ~V~~a~ 230 (231)
+|+|||
T Consensus 113 ~V~~ak 118 (118)
T 2khc_A 113 KVQLKK 118 (118)
T ss_dssp CEEEC-
T ss_pred EEEecC
Confidence 999986
No 164
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.79 E-value=1.4e-18 Score=118.14 Aligned_cols=78 Identities=28% Similarity=0.527 Sum_probs=72.6
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
...+.++|||+|||..+++++|+++|++||.|..+.+..++ +|+|||+|.+.++|.+|+..|||..+.+ ++|+|.
T Consensus 13 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~ 91 (100)
T 2do4_A 13 TSLEKHKLFISGLPFSCTKEELEEICKAHGTVKDLRLVTNRAGKPKGLAYVEYENESQASQAVMKMDGMTIKE-NIIKVA 91 (100)
T ss_dssp SCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSS-CEEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEE
Confidence 44567889999999999999999999999999999999864 5899999999999999999999999999 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
||+
T Consensus 92 ~a~ 94 (100)
T 2do4_A 92 ISN 94 (100)
T ss_dssp ECC
T ss_pred ECC
Confidence 986
No 165
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=99.79 E-value=9.8e-19 Score=121.94 Aligned_cols=80 Identities=18% Similarity=0.346 Sum_probs=73.9
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
......++|||+|||..+++++|+++|++||.|..|.+++++ +|||||+|.+.++|.+|+..|||..|.+ +.|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~ 88 (115)
T 2dgo_A 10 KDTSNHFHVFVGDLSPEITTEDIKAAFAPFGRISDARVVKDMATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGG-RQIR 88 (115)
T ss_dssp CCSTTCEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTCEETT-EECE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-EEEE
Confidence 344577899999999999999999999999999999999864 5899999999999999999999999999 9999
Q ss_pred EEeccC
Q 026902 226 ITFAKK 231 (231)
Q Consensus 226 V~~a~~ 231 (231)
|.||+.
T Consensus 89 V~~a~~ 94 (115)
T 2dgo_A 89 TNWATR 94 (115)
T ss_dssp EEESSC
T ss_pred EEEccC
Confidence 999973
No 166
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.78 E-value=2.4e-19 Score=128.23 Aligned_cols=82 Identities=10% Similarity=0.080 Sum_probs=74.8
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCC---eEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCcee
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGR---IFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPF 77 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~---v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~ 77 (231)
.++....++|||+|||+++|+++|+ ++|+.||. |..|++++ +++++|||||+|.+.++|.+|+. +|+..+
T Consensus 38 ~~~~~~~~~lfVgnLp~~~te~dL~----~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l 112 (136)
T 2hgl_A 38 GPEGGEGFVVKLRGLPWSCSVEDVQ----NFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESM 112 (136)
T ss_dssp CSSCCTTCEEEEESCCTTCCHHHHH----HHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEES
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHH----HHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEE
Confidence 4455678999999999999999999 99999999 78888886 58899999999999999999999 999999
Q ss_pred CCeeeEEEeccC
Q 026902 78 YDKPMRIQYAKS 89 (231)
Q Consensus 78 ~g~~l~v~~~~~ 89 (231)
.||.|.|.++..
T Consensus 113 ~gr~i~V~~a~~ 124 (136)
T 2hgl_A 113 GHRYIEVFKSHR 124 (136)
T ss_dssp SSSEEEEEECCH
T ss_pred CCEEEEEEECCh
Confidence 999999999753
No 167
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=8.8e-19 Score=118.88 Aligned_cols=77 Identities=22% Similarity=0.285 Sum_probs=72.0
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
.+.++|||+|||..+++++|+++|++||.|..+.++.++ +|||||+|.+.++|.+|+..|||..|.+ ++|+|.+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~ 84 (99)
T 1whw_A 6 SGSGRLFVRNLSYTSSEEDLEKLFSAYGPLSELHYPIDSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQG-RMLHVLP 84 (99)
T ss_dssp CSCEEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCCCTTTCCCCSEEEEEESSHHHHHHHHHHTTTEESSS-CEEEEEE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEEecCCCCCcCeEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEE
Confidence 467889999999999999999999999999999998753 6899999999999999999999999998 9999999
Q ss_pred ccC
Q 026902 229 AKK 231 (231)
Q Consensus 229 a~~ 231 (231)
|+.
T Consensus 85 a~~ 87 (99)
T 1whw_A 85 STI 87 (99)
T ss_dssp CCC
T ss_pred cCC
Confidence 873
No 168
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.9e-19 Score=125.44 Aligned_cols=79 Identities=22% Similarity=0.441 Sum_probs=73.0
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
..++|||+|||..+++++|+ ++|+.||.|..|.++. ++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V 98 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLE----DFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIV 98 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHH----HHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHH----HHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEE
Confidence 35799999999999999999 9999999999999987 4788999999999999999999 89999999999999
Q ss_pred EeccCcc
Q 026902 85 QYAKSKS 91 (231)
Q Consensus 85 ~~~~~~~ 91 (231)
.++.++.
T Consensus 99 ~~a~~~~ 105 (114)
T 2cq4_A 99 QASQAEK 105 (114)
T ss_dssp EEHHHHH
T ss_pred EecCCCc
Confidence 9986443
No 169
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.8e-18 Score=117.40 Aligned_cols=77 Identities=23% Similarity=0.429 Sum_probs=71.5
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
...+.++|||+|||..+++++|+++|++||.|..+.++++ .+|||||+|.+.++|.+|+. |||..+++ ++|+|
T Consensus 6 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-~~l~V 83 (99)
T 2dgs_A 6 SGSKSNKIFVGGIPHNCGETELREYFKKFGVVTEVVMIYDAEKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMG-KKVEV 83 (99)
T ss_dssp CCSSCCEEEEESCCSSCCHHHHHHHHSSSSCEEEEEECCCTTTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSS-CBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCCCceEEEEECCHHHHHHHHH-hCCCEECC-eEEEE
Confidence 3456788999999999999999999999999999999875 36999999999999999998 99999999 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.+|+
T Consensus 84 ~~a~ 87 (99)
T 2dgs_A 84 KRAE 87 (99)
T ss_dssp EECC
T ss_pred EECC
Confidence 9986
No 170
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.78 E-value=3.4e-19 Score=123.45 Aligned_cols=75 Identities=21% Similarity=0.337 Sum_probs=70.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
..++|||+|||..+++++|+++|++||.|..+.+++. +|+|||+|.+.++|..|+..|||..+.+ ++|.|.||+.
T Consensus 9 ~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~~ 83 (111)
T 1whx_A 9 SKTVILAKNLPAGTLAAEIQETFSRFGSLGRVLLPEG-GITAIVEFLEPLEARKAFRHLAYSKFHH-VPLYLEWAPI 83 (111)
T ss_dssp EEEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCSS-SSCEEEEESCHHHHHHHHHHHTTCBSSS-SBCEEEEEET
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CCEEEEEeCCHHHHHHHHHHhCCCEECC-eEEEEEECCC
Confidence 4678999999999999999999999999999999874 4899999999999999999999999999 9999999863
No 171
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.78 E-value=3.8e-19 Score=119.99 Aligned_cols=80 Identities=24% Similarity=0.324 Sum_probs=73.6
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
..+.++|||+|||..+++++|+ ++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..+.|++|.|.
T Consensus 13 ~~~~~~l~V~nL~~~~t~~~l~----~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 86 (96)
T 1fjc_A 13 VRAARTLLAKNLSFNITEDELK----EVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLY 86 (96)
T ss_dssp TTGGGEEEEESCCSSCCHHHHH----HHHCSEEEECCE--EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHhhCCcEEEe--CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 4568999999999999999999 999999998776 4578899999999999999999999999999999999999
Q ss_pred eccCcc
Q 026902 86 YAKSKS 91 (231)
Q Consensus 86 ~~~~~~ 91 (231)
++.++.
T Consensus 87 ~a~~~~ 92 (96)
T 1fjc_A 87 YTGEKG 92 (96)
T ss_dssp ECSSSC
T ss_pred EcCCCC
Confidence 987654
No 172
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.3e-18 Score=119.27 Aligned_cols=80 Identities=19% Similarity=0.331 Sum_probs=73.5
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
....+.++|||+|||..+++++|+++|++||.|..+.++.++ +|||||+|.+.++|.+|+..|||..|.+ ++|+
T Consensus 10 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~ 88 (105)
T 1x5u_A 10 SERNQDATVYVGGLDEKVSEPLLWELFLQAGPVVNTHMPKDRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYG-KPIR 88 (105)
T ss_dssp CCCCTTTEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCSBCSCEEEEESSHHHHHHHHHHSSSCBCSS-CBCE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCcCCcEEEEEECCHHHHHHHHHHhCCCeECC-eEEE
Confidence 344577899999999999999999999999999999998863 6899999999999999999999999999 9999
Q ss_pred EEeccC
Q 026902 226 ITFAKK 231 (231)
Q Consensus 226 V~~a~~ 231 (231)
|.||+.
T Consensus 89 v~~a~~ 94 (105)
T 1x5u_A 89 VNKASA 94 (105)
T ss_dssp EEETTT
T ss_pred EEECCC
Confidence 999863
No 173
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=99.78 E-value=5.7e-19 Score=118.88 Aligned_cols=79 Identities=20% Similarity=0.355 Sum_probs=73.1
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
...+.++|||+|||..+++++|+++|++||.|..+.+++++ +|+|||+|.+.++|.+|+..|||..+++ ++|+|.
T Consensus 12 ~~~~~~~l~v~nlp~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~ 90 (95)
T 2ywk_A 12 QEEADRTVFVGNLEARVREEILYELFLQAGPLTKVTICKDREGKPKSFGFVCFKHPESVSYAIALLNGIRLYG-RPINVS 90 (95)
T ss_dssp CTTGGGEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETT-EECEEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCceEEEEEECCHHHHHHHHHHhCCCEECC-CEEEEE
Confidence 34467889999999999999999999999999999999864 5899999999999999999999999999 999999
Q ss_pred eccC
Q 026902 228 FAKK 231 (231)
Q Consensus 228 ~a~~ 231 (231)
||+.
T Consensus 91 ~a~~ 94 (95)
T 2ywk_A 91 GPSS 94 (95)
T ss_dssp CCCC
T ss_pred EcCC
Confidence 9973
No 174
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.9e-19 Score=119.51 Aligned_cols=79 Identities=28% Similarity=0.441 Sum_probs=73.1
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
...+.++|||+|||..+++++|+++|++||.|..+.++++ .+|+|||+|.+.++|.+|+..|||..|.+ ++|+|
T Consensus 8 ~~~~~~~l~v~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v 86 (102)
T 1x5s_A 8 MASDEGKLFVGGLSFDTNEQSLEQVFSKYGQISEVVVVKDRETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDG-RQIRV 86 (102)
T ss_dssp CCCCCSEEEEESCCTTCCHHHHHHHHHHHSCCCEEEECCCSSSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTS-CCCEE
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEeCCCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-eEEEE
Confidence 3456789999999999999999999999999999999885 36899999999999999999999999999 99999
Q ss_pred EeccC
Q 026902 227 TFAKK 231 (231)
Q Consensus 227 ~~a~~ 231 (231)
.||+.
T Consensus 87 ~~a~~ 91 (102)
T 1x5s_A 87 DQAGK 91 (102)
T ss_dssp EEEEC
T ss_pred EECCC
Confidence 99874
No 175
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=99.78 E-value=8.4e-19 Score=123.98 Aligned_cols=79 Identities=22% Similarity=0.424 Sum_probs=71.3
Q ss_pred CCCCCCEEEecCCCCCCCHHHHH----HHhccCCCeeEEEEeeC--CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLE----MLFQQYPGFKEVRMIEA--KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~----~~f~~~g~v~~v~~~~~--~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
..+++++|||+|||..+++++|+ ++|++||.|.+|.+..+ .+|||||+|.+.++|..|+..|||..+.| ++|+
T Consensus 25 ~~~p~~~LfV~nL~~~~~e~~L~~~L~~~F~~~G~I~~v~i~~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~g-r~l~ 103 (127)
T 2a3j_A 25 HTEPSQVVLITNINPEVPKEKLQALLYALASSQGDILDIVVDLSDDNSGKAYIVFATQESAQAFVEAFQGYPFQG-NPLV 103 (127)
T ss_dssp CCSCCSEEEEESCCTTSCHHHHHHHHHHHHHHHSCEEEEEECCCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTT-SCCE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHHhccCCCeEEEEeccCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCC-CEEE
Confidence 34567899999999999999876 68999999999988763 47999999999999999999999999999 9999
Q ss_pred EEeccC
Q 026902 226 ITFAKK 231 (231)
Q Consensus 226 V~~a~~ 231 (231)
|.||+.
T Consensus 104 V~~a~~ 109 (127)
T 2a3j_A 104 ITFSET 109 (127)
T ss_dssp EEECCC
T ss_pred EEEccC
Confidence 999974
No 176
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.78 E-value=1.7e-18 Score=127.21 Aligned_cols=82 Identities=22% Similarity=0.304 Sum_probs=76.4
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
.+.++|||+|||..+|+++|+ ++|+.||.|..|.++. ++.++|||||+|.+.++|.+|+..||+..|.|++|+
T Consensus 37 ~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~ 112 (156)
T 1h2v_Z 37 KKSCTLYVGNLSFYTTEEQIY----ELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIR 112 (156)
T ss_dssp TTCCEEEEESCCTTCCHHHHH----HHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEE
Confidence 568999999999999999999 9999999999999987 477999999999999999999999999999999999
Q ss_pred EEeccCccc
Q 026902 84 IQYAKSKSD 92 (231)
Q Consensus 84 v~~~~~~~~ 92 (231)
|.++.+...
T Consensus 113 V~~a~~~~~ 121 (156)
T 1h2v_Z 113 TDWDAGFKE 121 (156)
T ss_dssp EEEESCCCT
T ss_pred EEECCCCCC
Confidence 999976543
No 177
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.3e-18 Score=116.80 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=72.2
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccC--CCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQY--GRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~--g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
..+.++|||+|||..+++++|+ ++|++| |.|..|.+ .+|||||+|.+.++|.+|+..|||..+.|++|+
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~g~g~v~~~~~-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 82 (99)
T 2cpd_A 12 MSSVKILYVRNLMLSTSEEMIE----KEFNNIKPGAVERVKK-----IRDYAFVHFSNREDAVEAMKALNGKVLDGSPIE 82 (99)
T ss_dssp SSCCCEEEEESCCTTCCHHHHH----HHHHTTSTTCEEEEEE-----CSSEEEEEESSHHHHHHHHHHHSSEEETTEEEE
T ss_pred cCCcCEEEEeCCCCCCCHHHHH----HHHHhcCCcceEEEEE-----eCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEE
Confidence 4668999999999999999999 999999 99999987 578999999999999999999999999999999
Q ss_pred EEeccCccc
Q 026902 84 IQYAKSKSD 92 (231)
Q Consensus 84 v~~~~~~~~ 92 (231)
|.++.++..
T Consensus 83 v~~a~~~~~ 91 (99)
T 2cpd_A 83 VTLAKPVDK 91 (99)
T ss_dssp EECCCCCCC
T ss_pred EEECCCCCC
Confidence 999987654
No 178
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.78 E-value=1.1e-18 Score=125.91 Aligned_cols=79 Identities=25% Similarity=0.461 Sum_probs=73.3
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
...+.++|||+|||..+++++|+ ++|++||.|..+++++ ++.++|||||+|.+.++|.+|+..|||..+.|++
T Consensus 59 ~~~~~~~l~v~nlp~~~~~~~l~----~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~ 134 (140)
T 2ku7_A 59 SATTKRVLYVGGLAEEVDDKVLH----AAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRT 134 (140)
T ss_dssp SCSSCCEEEEECCCTTCCHHHHH----HHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETTEE
T ss_pred CCCCCcEEEEEeCCCCCCHHHHH----HHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECCEE
Confidence 34678999999999999999999 9999999999999987 4789999999999999999999999999999999
Q ss_pred eEEEec
Q 026902 82 MRIQYA 87 (231)
Q Consensus 82 l~v~~~ 87 (231)
|+|.+|
T Consensus 135 l~v~~A 140 (140)
T 2ku7_A 135 IRVNLA 140 (140)
T ss_dssp EEEEC-
T ss_pred EEEEeC
Confidence 999875
No 179
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.6e-18 Score=118.44 Aligned_cols=79 Identities=18% Similarity=0.362 Sum_probs=72.6
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA---KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~---~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
.....++|||+|||..+++++|+++|++||.|..+.++.+ .+|||||+|.+.++|.+|+..|||..|.+ ++|+|.|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~ 89 (103)
T 2d9p_A 11 TRYQVVNLYVKNLDDGIDDERLRKAFSPFGTITSAKVMMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVAT-KPLYVAL 89 (103)
T ss_dssp CCSSCCCEEEECCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSEEEEEEEEESSHHHHHHHHHHHTTCBSSS-SBCEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEcCCCCcCEEEEEEECCHHHHHHHHHHhCCCEeCC-cEEEEEE
Confidence 3446778999999999999999999999999999999975 35899999999999999999999999998 9999999
Q ss_pred ccC
Q 026902 229 AKK 231 (231)
Q Consensus 229 a~~ 231 (231)
|+.
T Consensus 90 a~~ 92 (103)
T 2d9p_A 90 AQR 92 (103)
T ss_dssp CSS
T ss_pred ecc
Confidence 863
No 180
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=9.9e-19 Score=119.22 Aligned_cols=82 Identities=12% Similarity=0.150 Sum_probs=73.1
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
......++|||+|||+++|++||+ ++|+.||.+ +|++++ +++++|||||+|.+.++|.+|+. +|+..|.||.
T Consensus 10 ~~~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~ 83 (102)
T 1wez_A 10 FQSTTGHCVHMRGLPYRATENDIY----NFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQHRY 83 (102)
T ss_dssp CCCSSSCEEEEESCCTTCCHHHHH----HSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSSSC
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECCcE
Confidence 345678999999999999999999 999999955 888876 68899999999999999999996 8999999999
Q ss_pred eEEEeccCcc
Q 026902 82 MRIQYAKSKS 91 (231)
Q Consensus 82 l~v~~~~~~~ 91 (231)
|+|.++....
T Consensus 84 i~V~~~~~~~ 93 (102)
T 1wez_A 84 VELFLNSTAG 93 (102)
T ss_dssp CEEEEECCCC
T ss_pred EEEEECCCCC
Confidence 9999876543
No 181
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=99.78 E-value=1.9e-18 Score=119.06 Aligned_cols=80 Identities=21% Similarity=0.463 Sum_probs=73.3
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
...++.++|||+|||..+++++|+++|++||.|..+.+++++ +|||||+|.+.++|.+|+..|||..|.| ++|+
T Consensus 21 ~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g-~~l~ 99 (108)
T 2jrs_A 21 KGSAGPMRLYVGSLHFNITEDMLRGIFEPFGRIESIQLMMDSETGRSKGYGFITFSDSECAKKALEQLNGFELAG-RPMK 99 (108)
T ss_dssp CSCSSCEEEEEECCCSSCCHHHHHHHHTTTSCEEEEEEEEETTTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSS-SCCE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-EEEE
Confidence 344567889999999999999999999999999999998753 5899999999999999999999999999 9999
Q ss_pred EEeccC
Q 026902 226 ITFAKK 231 (231)
Q Consensus 226 V~~a~~ 231 (231)
|.+|+.
T Consensus 100 V~~a~~ 105 (108)
T 2jrs_A 100 VGHVTE 105 (108)
T ss_dssp EECSCS
T ss_pred EEEccc
Confidence 999974
No 182
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=1.1e-18 Score=119.24 Aligned_cols=79 Identities=23% Similarity=0.424 Sum_probs=73.3
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
...+.++|||+|||..+++++|+++|++||.|..|.++.++ +|+|||+|.+.++|.+|+..|||..|.+ ++|+|
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v 89 (103)
T 2cq0_A 11 RADDNATIRVTNLSEDTRETDLQELFRPFGSISRIYLAKDKTTGQSKGFAFISFHRREDAARAIAGVSGFGYDH-LILNV 89 (103)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHTTSTTTCCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHHHTTTCEETT-EECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeecCCCCceeeEEEEEECCHHHHHHHHHHcCCCeeCC-cEEEE
Confidence 45577899999999999999999999999999999999863 5899999999999999999999999999 99999
Q ss_pred EeccC
Q 026902 227 TFAKK 231 (231)
Q Consensus 227 ~~a~~ 231 (231)
.||+.
T Consensus 90 ~~a~~ 94 (103)
T 2cq0_A 90 EWAKP 94 (103)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99973
No 183
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.78 E-value=6.9e-19 Score=118.97 Aligned_cols=80 Identities=20% Similarity=0.340 Sum_probs=71.6
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
....++|||+|||..+++++|+ ++|+.||.|. +.++ ++.++|||||+|.+.++|.+|+..|||..+.|++|+|.
T Consensus 16 ~~~~~~l~V~nL~~~~t~~~l~----~~F~~~G~v~-~~~~-~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~ 89 (97)
T 2e5j_A 16 APLAADVYVGNLPRDARVSDLK----RALRELGSVP-LRLT-WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVA 89 (97)
T ss_dssp SCCCCEEEEECCCTTCCHHHHH----HHHHHTTCCC-SEEE-EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCcCcHHHHH----HHHHhcCCEE-EEEE-cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEE
Confidence 3458999999999999999999 9999999996 4444 35789999999999999999999999999999999999
Q ss_pred eccCcc
Q 026902 86 YAKSKS 91 (231)
Q Consensus 86 ~~~~~~ 91 (231)
++.++.
T Consensus 90 ~a~~~~ 95 (97)
T 2e5j_A 90 LARQQR 95 (97)
T ss_dssp ECCCCC
T ss_pred EcCCCC
Confidence 987654
No 184
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=7.9e-19 Score=130.20 Aligned_cols=77 Identities=23% Similarity=0.393 Sum_probs=71.5
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
..++++|||+|||..+++++|..+|++||.|..|.++.++ +|||||+|.+.++|..|+..|||..|.+ ++|.|.
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~ 147 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG-QTIQVD 147 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEE
Confidence 3467889999999999999999999999999999999863 6899999999999999999999999999 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
||+
T Consensus 148 ~a~ 150 (165)
T 1rk8_A 148 WCF 150 (165)
T ss_dssp ESE
T ss_pred Eec
Confidence 985
No 185
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=99.78 E-value=1.4e-18 Score=128.82 Aligned_cols=83 Identities=16% Similarity=0.270 Sum_probs=75.5
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..++++|||+|||..+++++|+ ++|+.||.|..|.++. ++.++|||||+|.+.++|.+|+..|||..|.|++|
T Consensus 69 ~~~~~~l~V~nLp~~~t~~~L~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l 144 (165)
T 1rk8_A 69 SVEGWILFVTSIHEEAQEDEIQ----EKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTI 144 (165)
T ss_dssp CC-CEEEEEESCCTTCCHHHHH----HHHGGGSCEEEEEEEECTTTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEEC
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHhhcCCCEEEEEEEecCCCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEE
Confidence 4557789999999999999999 9999999999999986 67889999999999999999999999999999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
.|.|+.++..
T Consensus 145 ~V~~a~~~~~ 154 (165)
T 1rk8_A 145 QVDWCFVKGP 154 (165)
T ss_dssp EEEESEECC-
T ss_pred EEEEecCCCC
Confidence 9999876554
No 186
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.78 E-value=1.3e-18 Score=118.95 Aligned_cols=78 Identities=23% Similarity=0.352 Sum_probs=72.6
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
...+.++|||+|||..+++++|.++|++||.|..+.+..++ +|+|||+|.+.++|.+|+..|||..|++ ++|+|
T Consensus 9 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V 87 (103)
T 2dnm_A 9 DVDGMITLKVDNLTYRTSPDSLRRVFEKYGRVGDVYIPREPHTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDG-RELRV 87 (103)
T ss_dssp CCSCCCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCBCSSSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTT-BCCEE
T ss_pred CCCCCeEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCCCCeEEEEEECCHHHHHHHHHHcCCCEECC-cEEEE
Confidence 44567889999999999999999999999999999998753 6899999999999999999999999999 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.||+
T Consensus 88 ~~a~ 91 (103)
T 2dnm_A 88 QVAR 91 (103)
T ss_dssp EECS
T ss_pred EECC
Confidence 9997
No 187
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=99.78 E-value=1.2e-18 Score=128.32 Aligned_cols=83 Identities=25% Similarity=0.415 Sum_probs=76.9
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..+.++|||+|||..+++++|+ ++|+.||.|..|.+++ ++.++|||||+|.+.++|.+|+..|||..+.|++|
T Consensus 67 ~~~~~~l~v~nl~~~~~~~~l~----~~F~~~G~v~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l 142 (158)
T 2kn4_A 67 VEGMTSLKVDNLTYRTSPDTLR----RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGREL 142 (158)
T ss_dssp CCBCCEEEEESCCTTCCHHHHH----HHHHHHSCEEEEECCCCSSCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEeecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEE
Confidence 3557999999999999999999 9999999999999987 58899999999999999999999999999999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+|.++.++..
T Consensus 143 ~v~~a~~~~~ 152 (158)
T 2kn4_A 143 RVQMARYGRP 152 (158)
T ss_dssp EEEEECCSSC
T ss_pred EEEECCCCCC
Confidence 9999976543
No 188
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=6.3e-19 Score=120.27 Aligned_cols=78 Identities=21% Similarity=0.405 Sum_probs=72.8
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
...+.++|||+|||..+++++|+++|++||.|..+.++++ .+|||||+|.+.++|.+|+..|||..|.+ ++|+|
T Consensus 8 ~~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V 86 (102)
T 2cqb_A 8 MATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-RTIRV 86 (102)
T ss_dssp SCCCCSCEEEESCCSSCCHHHHHHHHTTTSCCCCEECCCCSSSCCCSSEEEECCSSHHHHHHHHHHHTTEEETT-EEEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHhhccCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-cEEEE
Confidence 4457788999999999999999999999999999999876 36899999999999999999999999999 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.||+
T Consensus 87 ~~a~ 90 (102)
T 2cqb_A 87 NLAK 90 (102)
T ss_dssp EECC
T ss_pred EeCC
Confidence 9986
No 189
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.78 E-value=3.3e-19 Score=114.75 Aligned_cols=72 Identities=21% Similarity=0.376 Sum_probs=67.8
Q ss_pred EEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026902 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYA 87 (231)
Q Consensus 11 ~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~ 87 (231)
+|||+|||..+++++|+ ++|++||+|.++.++. ++.++|||||+|.+.++|.+|++ +||..+.|++|.|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVK----HYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHH----HHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CEEEecCCCCCCHHHHH----HHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 58999999999999999 9999999999999887 57899999999999999999998 9999999999999875
No 190
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=8.9e-19 Score=120.99 Aligned_cols=81 Identities=22% Similarity=0.386 Sum_probs=74.0
Q ss_pred CCCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC---CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 150 QETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK---PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 150 ~~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~---~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
.......++|||+|||..+++++|+++|++||.|..+.+..++ +|||||+|.+.++|.+|+..|||..++| ++|+|
T Consensus 23 ~~~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V 101 (109)
T 2err_A 23 TENKSQPKRLHVSNIPFRFRDPDLRQMFGQFGKILDVEIIFNERGSKGFGFVTFENSADADRAREKLHGTVVEG-RKIEV 101 (109)
T ss_dssp CSCTTCCCEEEEESCCTTCCHHHHHHHGGGTCCCSCEEECCBTTBCTTEEEEECCCSHHHHHHHHHHTTCEETT-EECEE
T ss_pred ccCCCCCCEEEEECCCCcCCHHHHHHHHHhcCCEEEEEEEECCCCCceEEEEEECCHHHHHHHHHHcCCCEECC-EEEEE
Confidence 3345577889999999999999999999999999999998763 7999999999999999999999999999 99999
Q ss_pred EeccC
Q 026902 227 TFAKK 231 (231)
Q Consensus 227 ~~a~~ 231 (231)
.+|+.
T Consensus 102 ~~a~~ 106 (109)
T 2err_A 102 NNATA 106 (109)
T ss_dssp EECCC
T ss_pred EECCC
Confidence 99973
No 191
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.78 E-value=2.8e-18 Score=117.24 Aligned_cols=82 Identities=21% Similarity=0.291 Sum_probs=74.9
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
...+.++|||+|||..+++++|+ ++|+.||.|..|.++. ++.++|||||+|.+.++|.+|+. ++..+.|+.
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~ 84 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLK----EYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRW 84 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHH----HHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHH----HHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCCeE
Confidence 34668999999999999999999 9999999999999987 48899999999999999999998 578999999
Q ss_pred eEEEeccCccc
Q 026902 82 MRIQYAKSKSD 92 (231)
Q Consensus 82 l~v~~~~~~~~ 92 (231)
|.|.++.++..
T Consensus 85 l~v~~a~~~~~ 95 (103)
T 2cqg_A 85 CDCKLPNSKQS 95 (103)
T ss_dssp EEEECCCTTCC
T ss_pred EEEEecCCCCc
Confidence 99999987654
No 192
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=99.78 E-value=1.5e-18 Score=117.26 Aligned_cols=77 Identities=16% Similarity=0.249 Sum_probs=70.5
Q ss_pred CCCCCCCEEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 151 ETAAPNNILFIQNLPH-ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
...+++++|||+|||. .+++++|+++|++||.|..+.+. +|||||+|.+.++|.+|+..|||..++| ++|+|+||
T Consensus 17 ~~~~~~~~l~V~nLp~~~~t~~~L~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a 92 (97)
T 2xnq_A 17 RGSHMKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIEXESQEMNFG-KKLILEVS 92 (97)
T ss_dssp --CCTTCEEEEESCCSSCCCHHHHHHHHGGGSCEEEEEEC---SSEEEEEESSHHHHHHHHHHHTTSEETT-EECEEEEC
T ss_pred CCCCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEec
Confidence 3455788999999998 99999999999999999999994 6999999999999999999999999998 99999999
Q ss_pred cC
Q 026902 230 KK 231 (231)
Q Consensus 230 ~~ 231 (231)
+.
T Consensus 93 ~~ 94 (97)
T 2xnq_A 93 SS 94 (97)
T ss_dssp CC
T ss_pred CC
Confidence 73
No 193
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=99.78 E-value=2.7e-19 Score=128.22 Aligned_cols=85 Identities=26% Similarity=0.417 Sum_probs=77.4
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
++..+.++|||+|||..+++++|+ ++|+.||.|..|.++. ++.++|||||+|.+.++|.+|+..|||..+.|+
T Consensus 42 ~~~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~v~i~~~~~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~ 117 (135)
T 2lea_A 42 PDVEGMTSLKVDNLTYRTSPDTLR----RVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGR 117 (135)
T ss_dssp SSGGGCCCEEEECCCSSCHHHHHH----HHHGGGSCCSEEECCCCSSSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSS
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECCE
Confidence 344567899999999999999999 9999999999999986 578999999999999999999999999999999
Q ss_pred eeEEEeccCccc
Q 026902 81 PMRIQYAKSKSD 92 (231)
Q Consensus 81 ~l~v~~~~~~~~ 92 (231)
+|+|.++.++..
T Consensus 118 ~l~V~~a~~~~~ 129 (135)
T 2lea_A 118 ELRVQMARYGRP 129 (135)
T ss_dssp CCEEEECCCCCC
T ss_pred EEEEEECCCCCC
Confidence 999999976543
No 194
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=7.2e-19 Score=122.59 Aligned_cols=82 Identities=27% Similarity=0.568 Sum_probs=73.9
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCe----EEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRI----FDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v----~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
..++++|||+|||..+|+++|+ ++|+.||.| ..+.+. ++.++|||||+|.+.++|.+|+..|||..+.|++
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~----~~f~~~G~v~~~~~~~~~~-~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~ 96 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLV----SLFARFQEKKGPPIQFRMM-TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKI 96 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHH----HHTHHHHHSSSSCCEEEEE-CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCB
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHHHhCCccceEEEEEcC-CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcE
Confidence 3567999999999999999999 999999998 445444 7889999999999999999999999999999999
Q ss_pred eEEEeccCccc
Q 026902 82 MRIQYAKSKSD 92 (231)
Q Consensus 82 l~v~~~~~~~~ 92 (231)
|+|.++.++..
T Consensus 97 l~v~~a~~~~~ 107 (115)
T 2cpx_A 97 LVIEFGKNKKQ 107 (115)
T ss_dssp CEEEECCCCSC
T ss_pred EEEEEccCCCC
Confidence 99999987654
No 195
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.77 E-value=7.2e-19 Score=127.38 Aligned_cols=83 Identities=29% Similarity=0.592 Sum_probs=75.3
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEE--------EEEecCCCccceEEEEEcCHHHHHHHHHHhCCcee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFD--------VVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPF 77 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~--------v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~ 77 (231)
..++++|||+|||+.+|+++|+ ++|+.||.|.. +++..++.++|||||+|.+.++|.+|+..|||..|
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~ 117 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLK----YIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVL 117 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHH----HHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEe
Confidence 4678999999999999999999 99999998865 55556899999999999999999999999999999
Q ss_pred CCeeeEEEeccCccc
Q 026902 78 YDKPMRIQYAKSKSD 92 (231)
Q Consensus 78 ~g~~l~v~~~~~~~~ 92 (231)
.|++|.|.++.+...
T Consensus 118 ~g~~l~V~~a~~~~~ 132 (143)
T 3egn_A 118 FGKPMVVQFARSARP 132 (143)
T ss_dssp TTEECEEEECCCSCC
T ss_pred CCcEEEEEECCCCCC
Confidence 999999999976543
No 196
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=99.77 E-value=2e-18 Score=115.45 Aligned_cols=77 Identities=19% Similarity=0.324 Sum_probs=71.7
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA---KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~---~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.+.++|||+|||..+++++|+++|++||.|..+.+.++ .+|+|||+|.+.++|.+|+..|||..+++ ++|+|.|++
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~f~~~G~v~~~~i~~~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g-~~l~v~~a~ 84 (92)
T 2dgv_A 6 SGACQIFVRNLPFDFTWKMLKDKFNECGHVLYADIKMENGKSKGCGVVKFESPEVAERACRMMNGMKLSG-REIDVRIDR 84 (92)
T ss_dssp SSCCEEEECSCCTTCCHHHHHHHHHTTSCEEEEEEEESSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTT-BCCCCEECS
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEccCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEcC
Confidence 46688999999999999999999999999999999874 36899999999999999999999999999 999999987
Q ss_pred C
Q 026902 231 K 231 (231)
Q Consensus 231 ~ 231 (231)
.
T Consensus 85 ~ 85 (92)
T 2dgv_A 85 N 85 (92)
T ss_dssp C
T ss_pred C
Confidence 3
No 197
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=99.77 E-value=1.3e-18 Score=119.91 Aligned_cols=75 Identities=28% Similarity=0.584 Sum_probs=70.5
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
...+.++|||+|||..+++++|+++|++||.|..+.+. +|+|||+|.+.++|.+|+..|||..++| ++|+|.||+
T Consensus 27 ~~~~~~~l~V~nLp~~~t~~~L~~~F~~~G~i~~v~i~---kg~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~ 101 (108)
T 2jvo_A 27 GELSNTRLFVRPFPLDVQESELNEIFGPFGPMKEVKIL---NGFAFVEFEEAESAAKAIEEVHGKSFAN-QPLEVVYSK 101 (108)
T ss_dssp -CCSCSEEEECSSCTTCCHHHHHHHHTTTSCCCEEEEE---TTEEEEECSSHHHHHHHHHHHTTCEETT-EECEEESCS
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEec
Confidence 44567899999999999999999999999999999998 6999999999999999999999999998 999999986
No 198
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=5.8e-19 Score=122.91 Aligned_cols=81 Identities=16% Similarity=0.076 Sum_probs=73.6
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCe-EEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRI-FDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v-~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..+.++|||+|||+++|+++|+ ++|+.||.| ..|+++. ++.++|||||+|.+.++|.+|+.. |+..|.|+.|
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i 86 (114)
T 2cpy_A 12 NSAKVCAHITNIPFSITKMDVL----QFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREA 86 (114)
T ss_dssp CSCCCEEEEESCCTTSCHHHHH----HHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEE
T ss_pred CCCccEEEEeCcCCcCCHHHHH----HHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEE
Confidence 4568999999999999999999 999999999 7788876 688999999999999999999996 9999999999
Q ss_pred EEEeccCcc
Q 026902 83 RIQYAKSKS 91 (231)
Q Consensus 83 ~v~~~~~~~ 91 (231)
.|.++.++.
T Consensus 87 ~v~~a~~~~ 95 (114)
T 2cpy_A 87 FVHVVTLED 95 (114)
T ss_dssp EEEEECHHH
T ss_pred EEEECCHHH
Confidence 999986443
No 199
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.1e-18 Score=120.46 Aligned_cols=77 Identities=17% Similarity=0.355 Sum_probs=72.4
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
....++|||+|||..+++++|+++|++||.|..+.+.++ +|||||+|.+.++|.+|+..|||..|++ ++|+|.||+.
T Consensus 22 ~~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~i~~~-~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~ 98 (109)
T 1x4g_A 22 SPKNCTVYCGGIASGLTDQLMRQTFSPFGQIMEIRVFPE-KGYSFVRFSTHESAAHAIVSVNGTTIEG-HVVKCYWGKE 98 (109)
T ss_dssp CSSCCEEEEECCSSCCCHHHHHHHHHHHSCEEEEEEETT-TTEEEEEESSHHHHHHHHHHHTTCEETT-EECEEECCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHcCCCEECC-cEEEEEecCC
Confidence 346788999999999999999999999999999999987 5999999999999999999999999999 9999999973
No 200
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=6.4e-19 Score=118.19 Aligned_cols=81 Identities=22% Similarity=0.317 Sum_probs=72.9
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCC-eEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCC-ceeCCee
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGR-IFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQN-FPFYDKP 81 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~-v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g-~~~~g~~ 81 (231)
....+.++|||+|||..+|+++|+ ++|++||. |..+.+ .++|||||+|.+.++|.+|+..||| ..+.|++
T Consensus 3 ~~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~vv~~~~~----~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~ 74 (93)
T 2cqh_A 3 SGSSGMNKLYIGNLSPAVTADDLR----QLFGDRKLPLAGQVL----LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKI 74 (93)
T ss_dssp CCCCCCCCEEEECCCTTCCHHHHH----HHHHHTTCCCSSCEE----EETTEEEECCSCHHHHHHHHHHHTTTCEETTEE
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHH----HHHHHcCCceEEEEE----cCCCEEEEEECCHHHHHHHHHHccCCeeECCEE
Confidence 456788999999999999999999 99999999 666655 3689999999999999999999999 9999999
Q ss_pred eEEEeccCccc
Q 026902 82 MRIQYAKSKSD 92 (231)
Q Consensus 82 l~v~~~~~~~~ 92 (231)
|+|.++.++..
T Consensus 75 l~v~~a~~~~~ 85 (93)
T 2cqh_A 75 MEVDYSVSKKL 85 (93)
T ss_dssp CEEEECCCCCC
T ss_pred EEEEEccCccc
Confidence 99999987654
No 201
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.2e-18 Score=118.03 Aligned_cols=76 Identities=26% Similarity=0.453 Sum_probs=70.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC--------CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK--------PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~--------~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
+.++|||+|||..+++++|+++|++||.|..+.+..++ +|||||+|.+.++|.+|+..|||..|.+ ++|+|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~gt~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V 82 (98)
T 2cpf_A 4 GSSGLFIKNLNFSTTEETLKGVFSKVGAIKSCTISKKKNKAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDG-HKLEV 82 (98)
T ss_dssp CCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEEEECTTCCEEEEEEEEEEESSHHHHHHHHHHSTTCEETT-EECEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCcCcccEEEEEECCHHHHHHHHHHhCCCeeCC-eEEEE
Confidence 56789999999999999999999999999999998642 4799999999999999999999999999 99999
Q ss_pred EeccC
Q 026902 227 TFAKK 231 (231)
Q Consensus 227 ~~a~~ 231 (231)
.||+.
T Consensus 83 ~~a~~ 87 (98)
T 2cpf_A 83 RISER 87 (98)
T ss_dssp ECSSC
T ss_pred EEccC
Confidence 99874
No 202
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=4.3e-19 Score=114.75 Aligned_cols=73 Identities=21% Similarity=0.399 Sum_probs=68.8
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
++|||+|||..+++++|+ ++|++||+|..+.+++ ++.++|||||+|.+.++|.+|+..++ ..+.|++|+|.+
T Consensus 1 ~~l~v~nlp~~~t~~~l~----~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~ 75 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLR----EYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKV 75 (77)
T ss_dssp CCEEEESCCSSCCSHHHH----HHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEE
T ss_pred CEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEe
Confidence 579999999999999999 9999999999999987 47889999999999999999999888 999999999988
Q ss_pred c
Q 026902 87 A 87 (231)
Q Consensus 87 ~ 87 (231)
+
T Consensus 76 a 76 (77)
T 1uaw_A 76 A 76 (77)
T ss_dssp C
T ss_pred c
Confidence 6
No 203
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=99.77 E-value=1.3e-18 Score=115.32 Aligned_cols=75 Identities=23% Similarity=0.332 Sum_probs=70.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA------KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~------~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
..++|||+|||..+++++|.++|++||.|..+.++.+ .+|+|||+|.+.++|.+|+..|||..++| +.|+|++
T Consensus 3 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~ 81 (88)
T 4a8x_A 3 KPTKVHIGRLTRNVTKDHIMEIFSTYGKIKMIDMPVERMHPHLSKGYAYVEFENPDEAEKALKHMDGGQIDG-QEITATA 81 (88)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCEEEEECCEETTEEEEECSEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEeCCCCCCCCCcEEEEEEecHHHHHHHHHHcCCCeECC-eEEEEEE
Confidence 4578999999999999999999999999999999764 46899999999999999999999999999 9999999
Q ss_pred cc
Q 026902 229 AK 230 (231)
Q Consensus 229 a~ 230 (231)
++
T Consensus 82 a~ 83 (88)
T 4a8x_A 82 VL 83 (88)
T ss_dssp EC
T ss_pred CC
Confidence 86
No 204
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.77 E-value=1.7e-19 Score=120.30 Aligned_cols=78 Identities=32% Similarity=0.549 Sum_probs=70.0
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
++|||+|||..+++++|+ ++|++||.|.++.+.+ ++.++|||||+|.+.+ |.+|+..|||..+.|++|+|.+
T Consensus 2 ~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~ 76 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVK----ELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTE 76 (90)
T ss_dssp EEEEEEEECTTSSHHHHT----TTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEE
T ss_pred cEEEECCCCCCCCHHHHH----HHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEE
Confidence 689999999999999999 9999999999999987 4789999999999999 9999999999999999999999
Q ss_pred ccCccc
Q 026902 87 AKSKSD 92 (231)
Q Consensus 87 ~~~~~~ 92 (231)
+.++..
T Consensus 77 a~~~~~ 82 (90)
T 2ki2_A 77 ANPKKS 82 (90)
T ss_dssp C-----
T ss_pred cCCCCC
Confidence 876543
No 205
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=3e-18 Score=117.66 Aligned_cols=78 Identities=22% Similarity=0.417 Sum_probs=72.3
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
....+++|||+|||..+++++|.++|++||.|..+.++.++ +|+|||+|.+.++|.+|+..|||..|+| ++|+|
T Consensus 19 ~~~~~~~l~V~nlp~~~t~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V 97 (106)
T 1p27_B 19 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-QPISV 97 (106)
T ss_dssp CBTTBEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSS-SBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCeEEEEEEecCCCCceeeEEEEEECCHHHHHHHHHHhcCCEECC-cEEEE
Confidence 34467889999999999999999999999999999998763 5899999999999999999999999999 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.||+
T Consensus 98 ~~a~ 101 (106)
T 1p27_B 98 DWCF 101 (106)
T ss_dssp EESE
T ss_pred Eeec
Confidence 9986
No 206
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=1.5e-18 Score=122.28 Aligned_cols=73 Identities=21% Similarity=0.342 Sum_probs=68.2
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcE-EEEEecCHHHHHHHHHHhcCCccCCC-CCeEEEecc
Q 026902 158 ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGI-AFVEFEDDVQSSMAMQALQGFKITPQ-NPMAITFAK 230 (231)
Q Consensus 158 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~-afV~f~~~~~A~~A~~~lng~~i~~~-~~l~V~~a~ 230 (231)
.|||+||++.+|+++|+++|++||.|.+|.+.+.++|+ |||+|.+.++|.+|+..|||+.|.++ ++|+|+|||
T Consensus 30 ~I~V~NL~~~vte~~L~~lFs~yG~V~~V~i~~~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak 104 (130)
T 3zzy_A 30 RIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 104 (130)
T ss_dssp EEEEESCCSCCCHHHHHHHHTTSSCEEEEEEEEETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECS
T ss_pred EEEECCCCCCCCHHHHHHHHhCcCCEEEEEEEcCCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecC
Confidence 36799999999999999999999999999998877788 99999999999999999999999764 889999997
No 207
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.77 E-value=4.6e-18 Score=114.89 Aligned_cols=78 Identities=19% Similarity=0.382 Sum_probs=69.9
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.....++|||+|||..+++++|+++|++||.|. +.++.+ .+|||||+|.+.++|.+|+..|||..|++ ++|+|.+|+
T Consensus 15 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~G~v~-~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a~ 92 (97)
T 2e5j_A 15 GAPLAADVYVGNLPRDARVSDLKRALRELGSVP-LRLTWQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGT-DTLRVALAR 92 (97)
T ss_dssp SSCCCCEEEEECCCTTCCHHHHHHHHHHTTCCC-SEEEEETTTTEEEEECSSHHHHHHHHHHHTTCCSSS-SCCEEEECC
T ss_pred CCCCCCEEEEeCCCCcCcHHHHHHHHHhcCCEE-EEEEcCCCCcEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEcC
Confidence 345678999999999999999999999999997 555554 57999999999999999999999999999 999999986
Q ss_pred C
Q 026902 231 K 231 (231)
Q Consensus 231 ~ 231 (231)
.
T Consensus 93 ~ 93 (97)
T 2e5j_A 93 Q 93 (97)
T ss_dssp C
T ss_pred C
Confidence 3
No 208
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=99.77 E-value=1.8e-18 Score=126.29 Aligned_cols=79 Identities=25% Similarity=0.428 Sum_probs=73.9
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
..+.++|||+|||..+|+++|+ ++|+.||.|.+|+++++ ++|||||+|.+.++|.+|+..|||..+.|++|+|.
T Consensus 70 ~~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~ 143 (150)
T 2i2y_A 70 CPLDCKVYVGNLGNNGNKTELE----RAFGYYGPLRSVWVARN--PPGFAFVEFEDPRDAADAVRELDGRTLCGCRVRVE 143 (150)
T ss_dssp STTSCEEEEESCCSCCSCHHHH----HHHHHHSCEEEEEECSS--SCSEEEEEESSHHHHHHHHHHHSSSCSSSSCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHHhhCCEEEEEEeeC--CCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 4568999999999999999999 99999999999999765 79999999999999999999999999999999999
Q ss_pred eccCc
Q 026902 86 YAKSK 90 (231)
Q Consensus 86 ~~~~~ 90 (231)
++.++
T Consensus 144 ~a~~~ 148 (150)
T 2i2y_A 144 LSNGE 148 (150)
T ss_dssp ECCCC
T ss_pred EcCCC
Confidence 98764
No 209
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=99.77 E-value=2.6e-18 Score=119.96 Aligned_cols=77 Identities=29% Similarity=0.453 Sum_probs=71.9
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
...++|||+|||..+++++|.++|++||.|..+.+..++ +|||||+|.+.++|.+|+..|||..|.+ ++|+|.||
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a 83 (116)
T 2fy1_A 5 DHPGKLFIGGLNRETNEKMLKAVFGKHGPISEVLLIKDRTSKSRGFAFITFENPADAKNAAKDMNGKSLHG-KAIKVEQA 83 (116)
T ss_dssp CSCCEEEEECCTTTCCHHHHHHHHHTSSCCSEEEEECSTTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSS-SBCEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHHhCCCEECC-EEEEEEEC
Confidence 356789999999999999999999999999999999863 6899999999999999999999999999 99999999
Q ss_pred cC
Q 026902 230 KK 231 (231)
Q Consensus 230 ~~ 231 (231)
+.
T Consensus 84 ~~ 85 (116)
T 2fy1_A 84 KK 85 (116)
T ss_dssp CC
T ss_pred CC
Confidence 74
No 210
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=99.77 E-value=3.1e-18 Score=120.64 Aligned_cols=79 Identities=19% Similarity=0.340 Sum_probs=70.6
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccce-EEEEEcCHHHHHHHHHHhCCceeCC--eeeEEE
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQ-AWVVFSEVTAASNAVRQMQNFPFYD--KPMRIQ 85 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~-afV~f~~~e~A~~a~~~l~g~~~~g--~~l~v~ 85 (231)
-..|||+||++.+|+++|+ ++|++||.|.+|++... ++|+ |||+|.+.++|.+|++.|||..|.| ++|+|.
T Consensus 28 VL~I~V~NL~~~vte~~L~----~lFs~yG~V~~V~i~~~--~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~ 101 (130)
T 3zzy_A 28 VLRIIVENLFYPVTLDVLH----QIFSKFGTVLKIITFTK--NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 101 (130)
T ss_dssp EEEEEEESCCSCCCHHHHH----HHHTTSSCEEEEEEEEE--TTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEE
T ss_pred eEEEEECCCCCCCCHHHHH----HHHhCcCCEEEEEEEcC--CCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEE
Confidence 3567799999999999998 99999999999988753 4677 9999999999999999999999998 899999
Q ss_pred eccCccch
Q 026902 86 YAKSKSDC 93 (231)
Q Consensus 86 ~~~~~~~~ 93 (231)
|++++...
T Consensus 102 ~ak~~~l~ 109 (130)
T 3zzy_A 102 FSKLTSLN 109 (130)
T ss_dssp ECSCSSCC
T ss_pred ecCCCcee
Confidence 99876543
No 211
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.5e-18 Score=119.64 Aligned_cols=79 Identities=6% Similarity=0.135 Sum_probs=71.2
Q ss_pred CCCCCCEEEE--eCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCcee-----
Q 026902 5 DIPPNQTIYI--KNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPF----- 77 (231)
Q Consensus 5 ~~~~~~~v~v--~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~----- 77 (231)
...++++||| ||||..+++++|+ ++|++||.|.+|.++ ..+|||||+|.+.++|.+|++.|||..+
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~----~~F~~fG~v~~v~i~---~~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg 93 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLL----PVLEKCGLVDALLMP---PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLG 93 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHH----HHHHHHSCEEEEECC---TTCSCEEEEESSHHHHHHHHHHTTTCEEECTTS
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHH----HHHHhcCCeEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCEEccccC
Confidence 4567899999 7799999999999 999999999999884 3589999999999999999999999988
Q ss_pred CCeeeEEEeccCc
Q 026902 78 YDKPMRIQYAKSK 90 (231)
Q Consensus 78 ~g~~l~v~~~~~~ 90 (231)
.|++|.|.|+...
T Consensus 94 ~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 94 QKITLYLNFVEKV 106 (114)
T ss_dssp CEEECEEEEESCC
T ss_pred CCcEEEEEecccC
Confidence 6899999998643
No 212
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=99.77 E-value=1.9e-18 Score=119.56 Aligned_cols=78 Identities=23% Similarity=0.387 Sum_probs=72.4
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
...++++|||+|||..+++++|+++|++||.|..+.++.++ +|+|||+|.+.++|.+|+..|||..++| ++|+|
T Consensus 22 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V 100 (110)
T 1oo0_B 22 RSVEGWILFVTSIHEEAQEDEIQEKFCDYGEIKNIHLNLDRRTGFSKGYALVEYETHKQALAAKEALNGAEIMG-QTIQV 100 (110)
T ss_dssp CBTTBEEEEEESCCTTCCHHHHHHHHGGGSCEEEEECCBCTTTSSBCSEEEEEESSHHHHHHHHHHHTTCEETT-EECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECC-cEEEE
Confidence 34567889999999999999999999999999999998763 6899999999999999999999999998 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.||+
T Consensus 101 ~~a~ 104 (110)
T 1oo0_B 101 DWCF 104 (110)
T ss_dssp EESE
T ss_pred EEcc
Confidence 9986
No 213
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=99.77 E-value=1e-18 Score=119.00 Aligned_cols=73 Identities=27% Similarity=0.436 Sum_probs=70.1
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
++|||+|||..+++++|+++|++||.|..+.++++.+|+|||+|.+.++|.+|+..|||..+++ ++|+|.||+
T Consensus 1 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a~ 73 (101)
T 2hvz_A 1 MKVYVGNLGTGAGKGELERAFSYYGPLRTVWIARNPPGFAFVEFEDPRDAEDAVRGLDGKVICG-SRVRVELST 73 (101)
T ss_dssp CEEEEECCCSSCSHHHHHHHHHHHCCCSEEEEESSSSSEEEEECSSHHHHHHHHHHHHHSCSSS-CCCEEEESS
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCEEEEEECCHHHHHHHHHHHCCCeECC-cEEEEEEcc
Confidence 3699999999999999999999999999999998877999999999999999999999999999 999999986
No 214
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=99.77 E-value=7.1e-19 Score=121.37 Aligned_cols=76 Identities=14% Similarity=0.137 Sum_probs=70.8
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCC-CeeEEEEee-CCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYP-GFKEVRMIE-AKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g-~v~~v~~~~-~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
+...+|||+|||.++++++|+++|++|| .|..+.+.. .++|||||+|.+.++|.+|+..|||..+.| +.|+|.+++
T Consensus 26 ~~~~~l~VgnLp~~~te~dL~~~F~~~G~~v~~v~i~~~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~G-r~i~V~~a~ 103 (111)
T 2jvr_A 26 AKRYRITMKNLPEGCSWQDLKDLARENSLETTFSSVNTRDFDGTGALEFPSEEILVEALERLNNIEFRG-SVITVERDD 103 (111)
T ss_dssp CCCEEEEEECSSCCCCHHHHHHHHHHHTCCCSEEECSSCSSSCCEEEEESSHHHHHHHHHHTTTEEETT-EEEEEEESC
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHHHhCCeeEEEEEEcCCCCCEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEECC
Confidence 4567899999999999999999999999 899999963 467999999999999999999999999999 999999986
No 215
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=9.3e-19 Score=118.05 Aligned_cols=76 Identities=24% Similarity=0.408 Sum_probs=71.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEE-EEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEV-RMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v-~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
+.++|||+|||..+++++|.++|++||.|..+ .++++ .+|||||+|.+.++|.+|+..|||..|++ ++|+|.|
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~ 82 (96)
T 1x5t_A 4 GSSGIFIGNLDPEIDEKLLYDTFSAFGVILQTPKIMRDPDTGNSKGYAFINFASFDASDAAIEAMNGQYLCN-RPITVSY 82 (96)
T ss_dssp CCCEEEEECCCTTCCHHHHHHHHHTTSCBSSCCEECCCTTTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETT-EECEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEEEcCCCCCcCeEEEEEECCHHHHHHHHHHcCCCEECC-EEEEEEE
Confidence 66889999999999999999999999999999 88876 36899999999999999999999999998 9999999
Q ss_pred ccC
Q 026902 229 AKK 231 (231)
Q Consensus 229 a~~ 231 (231)
|+.
T Consensus 83 a~~ 85 (96)
T 1x5t_A 83 AFK 85 (96)
T ss_dssp SCC
T ss_pred ecc
Confidence 863
No 216
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.77 E-value=1.3e-18 Score=120.55 Aligned_cols=78 Identities=12% Similarity=0.262 Sum_probs=71.9
Q ss_pred CCCCCCEEEecCCCCCCCHHHHH---HHhccCCCeeEEEEeeCC--------CcEEEEEecCHHHHHHHHHHhcCCccCC
Q 026902 152 TAAPNNILFIQNLPHETTSSMLE---MLFQQYPGFKEVRMIEAK--------PGIAFVEFEDDVQSSMAMQALQGFKITP 220 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~---~~f~~~g~v~~v~~~~~~--------~g~afV~f~~~~~A~~A~~~lng~~i~~ 220 (231)
.....++|||+|||..+++++|. ++|++||.|..+.++++. +|||||+|.+.++|.+|+..|||..|++
T Consensus 11 r~~~~~~l~V~nLp~~~~~~~l~~~~~~F~~~G~i~~v~i~~~~~~~~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~g 90 (111)
T 2cpi_A 11 RVVQKNLVFVVGLSQRLADPEVLKRPEYFGKFGKIHKVVINNSTSYAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDG 90 (111)
T ss_dssp CCCCSSCEEEEEECTTTCCHHHHHSTTTTTTTSCEEEEEEECCSSCCSSSCCCEEEEEEESSHHHHHHHHHHHTTEEETT
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHhhccCCEEEEEEecCCCcCccCCCCeEEEEEECcHHHHHHHHHHhCCCEECC
Confidence 44467789999999999999999 999999999999998753 3799999999999999999999999999
Q ss_pred CCCeEEEecc
Q 026902 221 QNPMAITFAK 230 (231)
Q Consensus 221 ~~~l~V~~a~ 230 (231)
++|+|.||+
T Consensus 91 -r~l~V~~a~ 99 (111)
T 2cpi_A 91 -RTLKASLGT 99 (111)
T ss_dssp -EEEEEESCC
T ss_pred -EEEEEEecc
Confidence 999999986
No 217
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.77 E-value=1.8e-18 Score=117.33 Aligned_cols=77 Identities=17% Similarity=0.338 Sum_probs=71.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCee-EEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCC---
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFK-EVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNP--- 223 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~-~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~--- 223 (231)
..+.++|||+|||..+++++|+++|++||.|. .+.+++++ +|||||+|.+.++|.+|+..|||..+.+ +.
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~~~~ 84 (99)
T 2div_A 6 SGMAASLWMGDLEPYMDENFISRAFATMGETVMSVKIIRNRLTGIPAGYCFVEFADLATAEKCLHKINGKPLPG-ATPAK 84 (99)
T ss_dssp CSSSSEEEECSCCTTCCHHHHHHHHHHTTCCCCEEEEEECSSSCCEEEEEEEECSCHHHHHHHHHTTTTSEESS-CSSCE
T ss_pred CCCccEEEEeCCCCCCCHHHHHHHHHHhCCcceEEEEeecCCCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCC-CCcce
Confidence 34678899999999999999999999999999 99998864 4899999999999999999999999999 99
Q ss_pred -eEEEecc
Q 026902 224 -MAITFAK 230 (231)
Q Consensus 224 -l~V~~a~ 230 (231)
|+|.||+
T Consensus 85 ~l~v~~a~ 92 (99)
T 2div_A 85 RFKLNYAT 92 (99)
T ss_dssp ECCEEETT
T ss_pred eEEEeecC
Confidence 9999986
No 218
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.7e-18 Score=118.18 Aligned_cols=75 Identities=17% Similarity=0.280 Sum_probs=69.7
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
...++|||+|||.++|+++|.++|++||.|.+|.++++ .+|||||+|.+.++|.+|+. +||..++| ++|.|.++
T Consensus 9 ~~~~~lfV~~Lp~~~te~~L~~~F~~~G~v~~v~i~~d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~g-r~l~V~~~ 86 (103)
T 1s79_A 9 VKNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKE-TDLLILFK 86 (103)
T ss_dssp SGGGCEEEECCCTTCCHHHHHHHHHTSSCEEEEEEECCCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTT-TTCEEEEH
T ss_pred CCCCEEEEECCCCCCCHHHHHHHHhhcCCEEEEEEEECCCCCCccEEEEEECCHHHHHHHHH-cCCCEECC-EEEEEEEc
Confidence 35678999999999999999999999999999999985 37999999999999999998 99999999 99999987
Q ss_pred c
Q 026902 230 K 230 (231)
Q Consensus 230 ~ 230 (231)
+
T Consensus 87 ~ 87 (103)
T 1s79_A 87 D 87 (103)
T ss_dssp H
T ss_pred h
Confidence 4
No 219
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=99.77 E-value=3.6e-18 Score=119.03 Aligned_cols=76 Identities=26% Similarity=0.510 Sum_probs=71.5
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC--CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~--~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.++++|||+|||..+++++|.++|++||.|..+.++.+ .+|+|||+|.+.++|.+|+..|||..++| +.|+|.||+
T Consensus 6 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~a~ 83 (115)
T 3lqv_A 6 EVNRILYIRNLPYKITAEEMYDIFGKYGPIRQIRVGNTPETRGTAYVVYEDIFDAKNAVDHLSGFNVSN-RYLVVLYYN 83 (115)
T ss_dssp TCCSEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEECSTTTTTCEEEEESSHHHHHHHHHHHTTCBSSS-CBCEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCcEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEEec
Confidence 46789999999999999999999999999999999875 36899999999999999999999999998 999999986
No 220
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.77 E-value=1.9e-18 Score=120.72 Aligned_cols=80 Identities=19% Similarity=0.403 Sum_probs=74.5
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
.++|||+|||..+++++|+ ++|+.||.|..|.++. ++.++|||||+|.+.++|.+|+.. ++..|.|+.|+|.
T Consensus 27 ~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~ 101 (116)
T 1x4b_A 27 FRKLFIGGLSFETTEESLR----NYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPK 101 (116)
T ss_dssp HTEEEEECCTTCCCHHHHH----HHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEE
Confidence 5899999999999999999 9999999999999987 478999999999999999999997 9999999999999
Q ss_pred eccCccch
Q 026902 86 YAKSKSDC 93 (231)
Q Consensus 86 ~~~~~~~~ 93 (231)
++.++...
T Consensus 102 ~a~~~~~~ 109 (116)
T 1x4b_A 102 RAVAREES 109 (116)
T ss_dssp CCSSCCCC
T ss_pred ECCCCccC
Confidence 99877553
No 221
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=99.77 E-value=1.2e-18 Score=118.58 Aligned_cols=77 Identities=21% Similarity=0.379 Sum_probs=71.5
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
...+++|||+|||..+++++|+++|++||.|.++.+.+. +|||||+|.+.++|.+|+..|||..++| +.|+|.||+.
T Consensus 24 ~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~-~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~~a~~ 100 (101)
T 2la4_A 24 PPRVTTAYIGNIPHFATEADLIPLFQNFGFILDFKHYPE-KGCCFIKYDTHEQAAVCIVALANFPFQG-RNLRTGWGKE 100 (101)
T ss_dssp CSSCCEEEEESCCTTCCHHHHHHHHHTTSCCSEEEEETT-TTEEEEECSSHHHHHHHHHHHTTCEETT-EECCCCBCCC
T ss_pred CCCCCEEEEcCCCcccCHHHHHHHHHhCCCEEEEEEecC-CCEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEeccC
Confidence 345688999999999999999999999999999999854 5899999999999999999999999999 9999999973
No 222
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=99.76 E-value=8.8e-19 Score=119.11 Aligned_cols=76 Identities=13% Similarity=0.231 Sum_probs=70.7
Q ss_pred CCCEEEecCCCC------CCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCC
Q 026902 155 PNNILFIQNLPH------ETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNP 223 (231)
Q Consensus 155 ~~~~l~v~nlp~------~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~ 223 (231)
.+++|||+|||. .+++++|+++|++||.|.++.+++++ +|||||+|.+.++|.+|+..|||..|.++++
T Consensus 5 ~~~~vfV~nLp~v~~~~~~~~~~~L~~~F~~~G~i~~v~i~~d~~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~ 84 (100)
T 3ns6_A 5 SDQYIVVNGAPVIPSAKVPVLKKALTSLFSKAGKVVNMEFPIDEATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHR 84 (100)
T ss_dssp GGGEEEEESCCCCBGGGHHHHHHHHHHHHHTTSCEEEEECCEETTTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCB
T ss_pred cCcEEEEeCCCcCChHHHHHHHHHHHHHHHhcCCEeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeE
Confidence 467899999999 99999999999999999999998753 6999999999999999999999999996699
Q ss_pred eEEEecc
Q 026902 224 MAITFAK 230 (231)
Q Consensus 224 l~V~~a~ 230 (231)
|+|.+|+
T Consensus 85 l~V~~a~ 91 (100)
T 3ns6_A 85 LFLYTMK 91 (100)
T ss_dssp CEEEESH
T ss_pred EEEEECc
Confidence 9999985
No 223
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.7e-18 Score=114.87 Aligned_cols=75 Identities=19% Similarity=0.328 Sum_probs=70.1
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
...+.++|||+|||..+++++|+++|++||.|..+.+.+ ++|||+|.+.++|.+|+..|||..|.+ +.|+|.||+
T Consensus 6 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~v~~~~---~~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~a~ 80 (92)
T 2dgt_A 6 SGKASTKLHVGNISPTCTNQELRAKFEEYGPVIECDIVK---DYAFVHMERAEDAVEAIRGLDNTEFQG-KRMHVQLST 80 (92)
T ss_dssp CCCSSEEEEEESCCSSCCHHHHHHHHHTTSCCCEEEECS---SEEEEEESCHHHHHHHHHHHTTEEETT-EEEEEEESS
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEC---CEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEEcc
Confidence 345678899999999999999999999999999999974 599999999999999999999999999 999999986
No 224
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.76 E-value=2.4e-18 Score=114.18 Aligned_cols=79 Identities=19% Similarity=0.276 Sum_probs=72.8
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
.+..++|||+|||..+++++|+ ++|++| .|.++++. .++|||||+|.+.++|.+|+..|||..+.|++|+|.
T Consensus 2 s~~~~~l~V~nLp~~~t~~~l~----~~F~~~-~v~~~~i~---~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~ 73 (88)
T 1wg1_A 2 SSGSSGILVKNLPQDSNCQEVH----DLLKDY-DLKYCYVD---RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQ 73 (88)
T ss_dssp CCCCCCEEEESCCSSCCHHHHH----HHTCSS-CCCCEEEE---GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHhhC-CeEEEEEe---CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEE
Confidence 4578999999999999999999 999999 99999884 789999999999999999999999999999999999
Q ss_pred eccCccc
Q 026902 86 YAKSKSD 92 (231)
Q Consensus 86 ~~~~~~~ 92 (231)
++..+..
T Consensus 74 ~a~~~~~ 80 (88)
T 1wg1_A 74 LQPTDAL 80 (88)
T ss_dssp ECCCCCC
T ss_pred EcCCCce
Confidence 9876543
No 225
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.76 E-value=3.6e-18 Score=118.23 Aligned_cols=78 Identities=23% Similarity=0.422 Sum_probs=72.4
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhc------CCccCC
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQ------GFKITP 220 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~ln------g~~i~~ 220 (231)
...+.++|||+|||..+++++|+++|++||.|..|.++.+ .+|||||+|.+.++|.+|+..|| |..|++
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g 90 (111)
T 1x4h_A 11 DVTEGKTVFIRNLSFDSEEEALGEVLQQFGDLKYVRVVLHPDTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDG 90 (111)
T ss_dssp CCCCCCCEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCSSSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSS
T ss_pred cCCCCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcC
Confidence 4456788999999999999999999999999999999875 36899999999999999999999 999999
Q ss_pred CCCeEEEecc
Q 026902 221 QNPMAITFAK 230 (231)
Q Consensus 221 ~~~l~V~~a~ 230 (231)
++|+|.||+
T Consensus 91 -~~l~v~~a~ 99 (111)
T 1x4h_A 91 -RQLKVDLAV 99 (111)
T ss_dssp -CEEEEECCC
T ss_pred -EEEEEEECC
Confidence 999999986
No 226
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=99.76 E-value=3e-18 Score=117.70 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=72.4
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCcc---CCCC
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKI---TPQN 222 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i---~~~~ 222 (231)
......++|||+|||..+++++|+++|++||.|..+.++.+ .+|||||+|.+.++|.+|+..|||..+ .+ +
T Consensus 8 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g-~ 86 (106)
T 2dgp_A 8 MKDHDAIKLFIGQIPRNLDEKDLKPLFEEFGKIYELTVLKDRFTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMN-R 86 (106)
T ss_dssp CCCTTCEEEEEESCCTTCCHHHHHHHHHHHSCCCEEECCCCSSSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCS-S
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCCCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCC-c
Confidence 34456788999999999999999999999999999999885 368999999999999999999999987 77 9
Q ss_pred CeEEEecc
Q 026902 223 PMAITFAK 230 (231)
Q Consensus 223 ~l~V~~a~ 230 (231)
+|+|.||+
T Consensus 87 ~l~v~~a~ 94 (106)
T 2dgp_A 87 PIQVKPAD 94 (106)
T ss_dssp CCEEEECC
T ss_pred eEEEEECC
Confidence 99999986
No 227
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=99.76 E-value=2.7e-18 Score=115.85 Aligned_cols=74 Identities=18% Similarity=0.308 Sum_probs=68.9
Q ss_pred CCCCCEEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 153 AAPNNILFIQNLPH-ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 153 ~~~~~~l~v~nlp~-~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.+++++|||+|||. .+++++|+++|++||.|..+.+. +|||||+|.+.++|..|+..|||..+.+ ++|+|.||+
T Consensus 7 ~~~~~~l~V~nlp~~~~t~~~l~~~F~~~G~v~~v~i~---~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~ 81 (96)
T 2kvi_A 7 IPPKSRLFIGNLPLKNVSKEDLFRIFSPYGHIMQINIK---NAFGFIQFDNPQSVRDAIECESQEMNFG-KKLILEVSS 81 (96)
T ss_dssp --CCEEEEEESSTTSCCCHHHHHHHHTTTCCCCEEEEE---TTEEEEEESCHHHHHHHHHHHTCSSCBT-TTBCEEEEE
T ss_pred CCCCCEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEe---CCEEEEEECCHHHHHHHHHHcCCCeeCC-cEEEEEEcC
Confidence 45778999999998 99999999999999999999995 6899999999999999999999999998 999999986
No 228
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.76 E-value=2.4e-18 Score=121.59 Aligned_cols=78 Identities=21% Similarity=0.402 Sum_probs=73.1
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
.++|||+|||..+++++|+ ++|+.||.|.+|.+++ ++.++|||||+|.+.++|.+|+ .|||..|.|+.|+|.
T Consensus 36 ~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~ 110 (124)
T 2jwn_A 36 KRSVYVGNVDYGSTAQDLE----AHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVL 110 (124)
T ss_dssp HTEEEEEEECTTCCHHHHH----HHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEE
T ss_pred CCEEEEeCCCCCCCHHHHH----HHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEE
Confidence 5899999999999999999 9999999999999886 6889999999999999999999 699999999999999
Q ss_pred eccCcc
Q 026902 86 YAKSKS 91 (231)
Q Consensus 86 ~~~~~~ 91 (231)
++.+..
T Consensus 111 ~a~~~~ 116 (124)
T 2jwn_A 111 PKRTNM 116 (124)
T ss_dssp ESSCCC
T ss_pred ECCCCC
Confidence 987544
No 229
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.2e-19 Score=115.91 Aligned_cols=77 Identities=23% Similarity=0.281 Sum_probs=71.6
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
.++++|||+|||..+++++|+++|++||.|..+.++.++ +|||||+|.+.++|.+|+..|||..+.+ +.|++++
T Consensus 3 ~~~~~l~v~nlp~~~t~~~l~~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~~~~~~ 81 (85)
T 1x4e_A 3 SGSSGLYIRGLQPGTTDQDLVKLCQPYGKIVSTKAILDKTTNKCKGYGFVDFDSPSAAQKAVTALKASGVQA-QMAKQSG 81 (85)
T ss_dssp CCCCEEEEESCCTTCCHHHHHTTSTTTSCEEEEEEECCSSSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCE-ESCCSSC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhcCCeEee-EEEeecC
Confidence 367889999999999999999999999999999998763 6899999999999999999999999999 9999998
Q ss_pred ccC
Q 026902 229 AKK 231 (231)
Q Consensus 229 a~~ 231 (231)
+++
T Consensus 82 ~~s 84 (85)
T 1x4e_A 82 PSS 84 (85)
T ss_dssp CCC
T ss_pred CCC
Confidence 764
No 230
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=99.76 E-value=2.9e-18 Score=121.44 Aligned_cols=78 Identities=22% Similarity=0.417 Sum_probs=72.4
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
....+++|||+|||..+++++|.++|++||.|..|.++.++ +|+|||+|.+.++|.+|+..|||..|.+ +.|+|
T Consensus 18 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v 96 (126)
T 3ex7_B 18 RSVEGWILFVTGVHEEATEEDIHDKFAEYGEIKNIHLNLDRRTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMG-QPISV 96 (126)
T ss_dssp CCSSSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEECCBCTTTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSS-SBCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC-eEEEE
Confidence 34467889999999999999999999999999999998764 7899999999999999999999999998 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.||+
T Consensus 97 ~~a~ 100 (126)
T 3ex7_B 97 DWCF 100 (126)
T ss_dssp EESE
T ss_pred EEec
Confidence 9985
No 231
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=1e-18 Score=120.40 Aligned_cols=78 Identities=14% Similarity=0.202 Sum_probs=70.4
Q ss_pred CCCCCCEEEe--cCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCcc-----CCCCCe
Q 026902 152 TAAPNNILFI--QNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI-----TPQNPM 224 (231)
Q Consensus 152 ~~~~~~~l~v--~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i-----~~~~~l 224 (231)
...++++||| +||+..+++++|+++|++||.|.+|.++++ +|||||+|.+.++|.+|+..|||..+ .+ ++|
T Consensus 21 ~~~pt~~L~V~Ng~L~~~~te~~L~~~F~~fG~v~~v~i~~~-rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g-~~l 98 (114)
T 2cq2_A 21 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPPN-KPYSFARYRTTEESKRAYVTLNGKEVVDDLGQK-ITL 98 (114)
T ss_dssp CSSCCSEEEEETCTGGGTCCHHHHHHHHHHHSCEEEEECCTT-CSCEEEEESSHHHHHHHHHHTTTCEEECTTSCE-EEC
T ss_pred CCCCCCEEEEECCCCCCCCCHHHHHHHHHhcCCeEEEEEeCC-CCEEEEEECCHHHHHHHHHHhCCCEEccccCCC-cEE
Confidence 3456788999 779999999999999999999999998775 59999999999999999999999988 55 999
Q ss_pred EEEeccC
Q 026902 225 AITFAKK 231 (231)
Q Consensus 225 ~V~~a~~ 231 (231)
.|.|++.
T Consensus 99 ~v~~a~~ 105 (114)
T 2cq2_A 99 YLNFVEK 105 (114)
T ss_dssp EEEEESC
T ss_pred EEEeccc
Confidence 9999874
No 232
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.76 E-value=7.6e-19 Score=148.90 Aligned_cols=77 Identities=25% Similarity=0.393 Sum_probs=71.8
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
..+.++|||+|||..+|+++|..+|++||.|..|.|+.+ .+|||||+|.+.++|.+||..|||..|++ +.|.|.
T Consensus 99 ~~~~~~lfV~nL~~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~g-r~i~V~ 177 (437)
T 3pgw_S 99 GDAFKTLFVARVNYDTTESKLRREFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDG-RRVLVD 177 (437)
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECC-EEEEEE
Confidence 345678999999999999999999999999999999875 37999999999999999999999999999 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
||+
T Consensus 178 ~a~ 180 (437)
T 3pgw_S 178 VER 180 (437)
T ss_pred EeC
Confidence 986
No 233
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.76 E-value=3.3e-18 Score=124.98 Aligned_cols=81 Identities=21% Similarity=0.372 Sum_probs=72.1
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCC--eeeEEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD--KPMRIQ 85 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g--~~l~v~ 85 (231)
...+|||+|||+.+|+++|+ ++|++||.|.+|++.. +.++|||||+|.+.++|.+|++.|||..|.| ++|+|.
T Consensus 45 ~vl~l~VgNL~~~vted~L~----~~Fs~fG~V~~V~i~~-k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~ 119 (164)
T 1sjr_A 45 PVLRIIVENLFYPVTLDVLH----QIFSKFGTVLKIITFT-KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRID 119 (164)
T ss_dssp CEEEEEECSCCSCCCHHHHH----HHHHHHSCEEEEEEEE-SSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEE
T ss_pred ceEEEEEeCcCCCCCHHHHH----HHHHhcCCEEEEEEEe-CCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEE
Confidence 34568999999999999999 9999999999998864 3468999999999999999999999999976 999999
Q ss_pred eccCccch
Q 026902 86 YAKSKSDC 93 (231)
Q Consensus 86 ~~~~~~~~ 93 (231)
|++++...
T Consensus 120 ~Ak~~~l~ 127 (164)
T 1sjr_A 120 FSKLTSLN 127 (164)
T ss_dssp ECSSSSCC
T ss_pred EecCCccc
Confidence 99877543
No 234
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=7.5e-18 Score=113.83 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=71.9
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
..+.++|||+|| .+++++|+ ++|++||.|..|.+ +.++|||||+|.+.++|.+|+..|||..+.|++|+|.
T Consensus 12 ~~~~~~l~V~n~--~~t~~~l~----~~F~~~G~i~~v~i---~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~ 82 (97)
T 1x5p_A 12 PRKGNTLYVYGE--DMTPTLLR----GAFSPFGNIIDLSM---DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 82 (97)
T ss_dssp CCCCSEEEEECS--SCCHHHHH----HHHTTTSCEEEEEE---ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHH----HHHhhCCCEEEEEe---cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEE
Confidence 456899999996 89999999 99999999999999 5789999999999999999999999999999999999
Q ss_pred eccCccc
Q 026902 86 YAKSKSD 92 (231)
Q Consensus 86 ~~~~~~~ 92 (231)
++.++..
T Consensus 83 ~a~~~~~ 89 (97)
T 1x5p_A 83 IARKQPM 89 (97)
T ss_dssp CCSSCCC
T ss_pred ECCCCCC
Confidence 9977654
No 235
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=99.76 E-value=3.4e-18 Score=121.51 Aligned_cols=78 Identities=24% Similarity=0.359 Sum_probs=72.5
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
...+.++|||+|||..+++++|+++|++||.|..+.++++ .+|||||+|.+.++|.+|+..|||..|.+ ++|+|
T Consensus 42 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g-~~l~V 120 (129)
T 2kxn_B 42 NPDPNCCLGVFGLSLYTTERDLREVFSKYGPIADVSIVYDQQSRRSRGFAFVYFENVDDAKEAKERANGMELDG-RRIRV 120 (129)
T ss_dssp CCCCSSCBCEETCTTSCCHHHHHHHHTTTSCEEEEEEECCSSSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSS-SCCEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC-EEEEE
Confidence 4456788999999999999999999999999999999875 36899999999999999999999999999 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.||+
T Consensus 121 ~~a~ 124 (129)
T 2kxn_B 121 DFSI 124 (129)
T ss_dssp SCCS
T ss_pred EEec
Confidence 9986
No 236
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-18 Score=114.65 Aligned_cols=77 Identities=31% Similarity=0.492 Sum_probs=70.5
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccC--CCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQY--PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~--g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
....+.++|||+|||..+++++|+++|++| |.|..+.+. +|||||+|.+.++|.+|+..|||..|.+ ++|+|.|
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~g~v~~~~~~---~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~~ 85 (99)
T 2cpd_A 10 DTMSSVKILYVRNLMLSTSEEMIEKEFNNIKPGAVERVKKI---RDYAFVHFSNREDAVEAMKALNGKVLDG-SPIEVTL 85 (99)
T ss_dssp SCSSCCCEEEEESCCTTCCHHHHHHHHHTTSTTCEEEEEEC---SSEEEEEESSHHHHHHHHHHHSSEEETT-EEEEEEC
T ss_pred cccCCcCEEEEeCCCCCCCHHHHHHHHHhcCCcceEEEEEe---CCeEEEEeCCHHHHHHHHHHhCCCEeCC-cEEEEEE
Confidence 344567899999999999999999999999 999998875 5799999999999999999999999998 9999999
Q ss_pred ccC
Q 026902 229 AKK 231 (231)
Q Consensus 229 a~~ 231 (231)
|+.
T Consensus 86 a~~ 88 (99)
T 2cpd_A 86 AKP 88 (99)
T ss_dssp CCC
T ss_pred CCC
Confidence 973
No 237
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=6.2e-18 Score=117.64 Aligned_cols=78 Identities=21% Similarity=0.338 Sum_probs=72.5
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
...++++|||+|||..+++++|+++|++||.|..+.++.++ +|||||+|.+.++|.+|+..|||..|.+ +.|+|.
T Consensus 11 ~~~~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~ 89 (114)
T 2do0_A 11 AGRLGSTVFVANLDYKVGWKKLKEVFSMAGVVVRADILEDKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFD-RPMHVK 89 (114)
T ss_dssp CCCCCSCEEEESCCTTCCHHHHHHHHTTTSCEEEEEEEECTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCC-CEEEEE
Confidence 34567889999999999999999999999999999999863 5799999999999999999999999998 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
||+
T Consensus 90 ~a~ 92 (114)
T 2do0_A 90 MDE 92 (114)
T ss_dssp ECS
T ss_pred Ecc
Confidence 986
No 238
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.76 E-value=3.2e-19 Score=121.51 Aligned_cols=81 Identities=20% Similarity=0.279 Sum_probs=72.2
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..+.++|||+|||..+++++|+ ++|+.||.|.. .++. ++.++|||||+|.+.++|.+|++ |||..+.|+.|
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l 87 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELK----VAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEI 87 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHH----HHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEE
Confidence 3468899999999999999999 99999998877 3333 58899999999999999999999 99999999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
+|.++.++..
T Consensus 88 ~V~~a~~~~~ 97 (101)
T 1fj7_A 88 KLEKPKGRDG 97 (101)
T ss_dssp EEECCSCCCC
T ss_pred EEEEcCCCCC
Confidence 9999976543
No 239
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=2.2e-18 Score=118.62 Aligned_cols=74 Identities=14% Similarity=0.203 Sum_probs=69.1
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
..+|||+|||+++|++||+ ++|+.| .|..|.|+. +|+++|||||+|.+.++|.+|+. +|+..|.||.|.|..
T Consensus 16 ~~~v~V~nLp~~~te~dl~----~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~ 89 (109)
T 2dnn_A 16 DLYVSVHGMPFSAMENDVR----DFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEALK-RNRMLMIQRYVEVSP 89 (109)
T ss_dssp HHEEEEECCCSSCCHHHHH----HHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHHH-TTTEEETTEEEEEEE
T ss_pred CCEEEEeCCCCCCCHHHHH----HHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEE
Confidence 5799999999999999999 999999 899999987 58899999999999999999995 999999999999988
Q ss_pred cc
Q 026902 87 AK 88 (231)
Q Consensus 87 ~~ 88 (231)
+.
T Consensus 90 a~ 91 (109)
T 2dnn_A 90 AT 91 (109)
T ss_dssp CC
T ss_pred CC
Confidence 75
No 240
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=99.76 E-value=1.4e-18 Score=118.17 Aligned_cols=78 Identities=22% Similarity=0.356 Sum_probs=68.3
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCccCCCCCe
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK------PGIAFVEFEDDVQSSMAMQALQGFKITPQNPM 224 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~------~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l 224 (231)
......++|||+|||..+++++|+++|++|| |.++.++.++ +|||||+|.+.++|.+|+ .|||..|+| +.|
T Consensus 14 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g-~~l 90 (100)
T 2j76_E 14 LPKSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN-RRI 90 (100)
T ss_dssp ------CEEEESCCSSCCSSSHHHHHSCSSC-EEEEECSCCTTTTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTT-BCC
T ss_pred CCCCCCcEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEecCCcCCccCeEEEEEECCHHHHHHHH-hcCCCEECC-eEE
Confidence 3455778999999999999999999999999 9999998764 689999999999999999 899999999 999
Q ss_pred EEEeccC
Q 026902 225 AITFAKK 231 (231)
Q Consensus 225 ~V~~a~~ 231 (231)
+|.+|+.
T Consensus 91 ~V~~a~~ 97 (100)
T 2j76_E 91 RVDVADQ 97 (100)
T ss_dssp CCEECCC
T ss_pred EEEeccC
Confidence 9999873
No 241
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.76 E-value=3e-18 Score=114.21 Aligned_cols=75 Identities=21% Similarity=0.376 Sum_probs=69.8
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
..+.++|||+|||..+++++|+++|++||.|..+.+.+ ++|||+|.+.++|.+|+..|||..+++ ++|+|.||+.
T Consensus 6 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~~~---~~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~~ 80 (90)
T 2dnp_A 6 SGNTWKIFVGNVSAACTSQELRSLFERRGRVIECDVVK---DYAFVHMEKEADAKAAIAQLNGKEVKG-KRINVELSTK 80 (90)
T ss_dssp SCCSCCEEEESCCTTCCHHHHHHHHHHHSCEEEEEECS---SCEEEEESCHHHHHHHHHHHTTCEETT-EECEEEESCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHcCCCEEEEEEEC---CEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEECCC
Confidence 34667899999999999999999999999999999974 599999999999999999999999999 9999999863
No 242
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.76 E-value=4.2e-18 Score=117.77 Aligned_cols=76 Identities=28% Similarity=0.432 Sum_probs=70.9
Q ss_pred CCCCEEEEeCCCCc-cCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 7 PPNQTIYIKNLNEK-IKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 7 ~~~~~v~v~nLp~~-~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
..+++|||+|||.. +++++|+ ++|++||.|..|.+ ++|||||+|.+.++|.+|+..|||..+.|++|+|.
T Consensus 25 ~~~~~l~V~nl~~~~~t~~~l~----~~F~~~G~v~~v~i-----~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~ 95 (110)
T 1wf1_A 25 SINSRVFIGNLNTALVKKSDVE----TIFSKYGRVAGCSV-----HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDIN 95 (110)
T ss_dssp TCSSEEEECSCCCSSCCHHHHH----HHHGGGSCCSEEEE-----ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEE
T ss_pred CCCcEEEEeCCCcccCCHHHHH----HHHHhCCCeEEEEE-----eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEE
Confidence 34689999999999 9999999 99999999999988 78999999999999999999999999999999999
Q ss_pred eccCcc
Q 026902 86 YAKSKS 91 (231)
Q Consensus 86 ~~~~~~ 91 (231)
++..+.
T Consensus 96 ~a~~~~ 101 (110)
T 1wf1_A 96 MAGEPK 101 (110)
T ss_dssp ESCCCC
T ss_pred ECCCCC
Confidence 997543
No 243
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.76 E-value=2.8e-18 Score=117.42 Aligned_cols=77 Identities=25% Similarity=0.513 Sum_probs=71.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhcc-CCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCc-cCCCCCeEE
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQ-YPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFK-ITPQNPMAI 226 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~-~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~-i~~~~~l~V 226 (231)
..+.++|||+|||..+++++|.++|++ ||.|..+.++++ .+|||||+|.+.++|.+|+..|||.. +++ ++|+|
T Consensus 6 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g-~~l~v 84 (104)
T 2dhg_A 6 SGPEYSLFVGDLTPDVDDGMLYEFFVKVYPSCRGGKVVLDQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGS-KPVRL 84 (104)
T ss_dssp SSCCCCEEEECCCTTCCHHHHHHHHHHHCTTEEEEEEEECTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSS-SCCCC
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHHHccCCcccCC-EeEEE
Confidence 346778999999999999999999999 999999999986 36899999999999999999999999 998 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.+|+
T Consensus 85 ~~a~ 88 (104)
T 2dhg_A 85 SVAI 88 (104)
T ss_dssp CBCC
T ss_pred EEcc
Confidence 9986
No 244
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.76 E-value=6.3e-19 Score=124.59 Aligned_cols=80 Identities=14% Similarity=0.200 Sum_probs=70.8
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEe---cCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVAL---KTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~---~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
....++|||+|||+.+|+++|+ ++|+.||.|..+.++ .++.++|||||+|.+.++|.+|+. +||..|.|+.|
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i 96 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVI----DFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFI 96 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHH----HHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCB
T ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEE
Confidence 3456899999999999999999 999999998763332 278899999999999999999999 99999999999
Q ss_pred EEEeccCc
Q 026902 83 RIQYAKSK 90 (231)
Q Consensus 83 ~v~~~~~~ 90 (231)
.|.++..+
T Consensus 97 ~V~~a~~~ 104 (124)
T 1wel_A 97 QVHPITKK 104 (124)
T ss_dssp EEEEECHH
T ss_pred EEEECCHH
Confidence 99998643
No 245
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=99.75 E-value=3.4e-18 Score=113.63 Aligned_cols=73 Identities=19% Similarity=0.324 Sum_probs=69.2
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.++|||+|||..+++++|+++|++||.|..+.++.++ +|+|||+|.+.++|.+|+ .|||..+.+ +.|+|.+|+
T Consensus 6 ~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g-~~l~V~~a~ 83 (89)
T 3ucg_A 6 ARSIYVGNVDYGATAEELEAHFHGCGSVNRVTILCDKFSGHPKGFAYIEFSDKESVRTSL-ALDESLFRG-RQIKVIPKR 83 (89)
T ss_dssp HTEEEEESCCTTCCHHHHHHHHGGGCCEEEEEEEESCSSSSCCEEEEEEESSTHHHHHHG-GGTTCEETT-EECEEEETT
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEEecCCCCCcceEEEEEECCHHHHHHHH-hcCCCEECC-cEEEEEEcc
Confidence 4689999999999999999999999999999998763 789999999999999999 999999999 999999987
No 246
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.75 E-value=5.4e-18 Score=111.26 Aligned_cols=72 Identities=17% Similarity=0.254 Sum_probs=64.4
Q ss_pred CCCCE-EEecCCCCCCCHHH----HHHHhccCC-CeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 154 APNNI-LFIQNLPHETTSSM----LEMLFQQYP-GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 154 ~~~~~-l~v~nlp~~~t~~~----l~~~f~~~g-~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
+++.+ |||+|||.++++++ |+++|++|| .|.+| . . |+|||.|.+.++|.+|+..|||+++.+ ++|+|+
T Consensus 6 ~p~~T~lYV~NL~~~~~~~~lk~~L~~lF~~yGG~Vl~V---t-g-G~AfV~F~~~esA~~A~~~l~G~~l~g-r~i~v~ 79 (96)
T 2diu_A 6 SGCHTLLYVYNLPANKDGKSVSNRLRRLSDNCGGKVLSI---T-G-CSAILRFINQDSAERAQKRMENEDVFG-NRIIVS 79 (96)
T ss_dssp CCSSEEEEEESCCTTSCHHHHHHHHHHHHHTTTCCEEEC---C-T-TCEEEEESSHHHHHHHHHHHTTCCSSS-SCCEEE
T ss_pred CCcceEEEEeCCCCcCCHHHHHHHHHHHHHHcCCeeEEE---e-c-CEEEEEECCHHHHHHHHHHhcCCccCC-ceEEEE
Confidence 45666 99999999999988 558999994 99988 2 2 999999999999999999999999999 999999
Q ss_pred eccC
Q 026902 228 FAKK 231 (231)
Q Consensus 228 ~a~~ 231 (231)
||+.
T Consensus 80 ~A~~ 83 (96)
T 2diu_A 80 FTPK 83 (96)
T ss_dssp SSCC
T ss_pred ecCC
Confidence 9973
No 247
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=99.75 E-value=1.1e-18 Score=116.27 Aligned_cols=73 Identities=22% Similarity=0.252 Sum_probs=66.0
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCC--CeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQYP--GFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~g--~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
.+|||+|||..+++++|+++|++|| .|.++.++.++ +|||||+|.+.++|.+|+..|||..++| +.|+|.++
T Consensus 2 ~~l~V~nL~~~~t~~~l~~~F~~~G~~~v~~v~i~~~~~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~g-r~i~V~~~ 80 (90)
T 3p5t_L 2 IALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG-QNPVVTPS 80 (90)
T ss_dssp --CEEESCCTTCCHHHHHHHHHTTTCCCCCCEEEEECTTTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSS-CCCEECCC
T ss_pred eEEEEeCCCCCCCHHHHHHHHHHhCCCceEEEEEEecCCCCccCcEEEEEECCHHHHHHHHHHcCCCeeCC-EEEEEEEC
Confidence 4699999999999999999999999 99999998863 6899999999999999999999999999 99999988
Q ss_pred c
Q 026902 230 K 230 (231)
Q Consensus 230 ~ 230 (231)
+
T Consensus 81 ~ 81 (90)
T 3p5t_L 81 N 81 (90)
T ss_dssp -
T ss_pred C
Confidence 5
No 248
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=99.75 E-value=5.6e-18 Score=116.51 Aligned_cols=77 Identities=22% Similarity=0.373 Sum_probs=71.9
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
..+.++|||+|||..+++++|.++|++||.|..+.++.+. +|+|||+|.+.++|.+|+..|||..+++ ++|+|.|
T Consensus 26 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~V~~ 104 (107)
T 3ulh_A 26 VETGGKLLVSNLDFGVSDADIQELFAEFGTLKKAAVHYDRSGRSLGTADVHFERKADALKAMKQYNGVPLDG-RPMNIQL 104 (107)
T ss_dssp CCCSEEEEEESCCTTCCHHHHHHHHHTTSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCC-cEEEEEE
Confidence 3467889999999999999999999999999999999763 5899999999999999999999999999 9999999
Q ss_pred cc
Q 026902 229 AK 230 (231)
Q Consensus 229 a~ 230 (231)
|.
T Consensus 105 a~ 106 (107)
T 3ulh_A 105 VT 106 (107)
T ss_dssp EC
T ss_pred eC
Confidence 86
No 249
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.75 E-value=6.5e-18 Score=112.27 Aligned_cols=80 Identities=24% Similarity=0.387 Sum_probs=63.1
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCce--eCCe
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFP--FYDK 80 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~--~~g~ 80 (231)
.....+..+|||+|||+++|+++|+ ++|++||.|.+|+++++ ++|||||+|.+.++|.+ +++.. +.|+
T Consensus 5 ~~~~~~~~~l~V~~Lp~~~te~~L~----~~F~~~G~i~~v~i~~~--srGfaFV~F~~~~~A~~----~~~~~~~~~g~ 74 (89)
T 3d2w_A 5 HHHHHHGSKVFVGRCTEDMTAEELQ----QFFCQYGEVVDVFIPKP--FRAFAFVTFADDKVAQS----LCGEDLIIKGI 74 (89)
T ss_dssp ------CCEEEEESCCTTCCHHHHH----HHHTTTSCEEEEECCSS--CCSEEEEEESCHHHHHH----HTTCEEEETTE
T ss_pred CCCCCCCCEEEEeCCCCCCCHHHHH----HHHhccCCEEEEEEeeC--CCCEEEEEECCHHHHHH----HcCCCcccCCE
Confidence 3456789999999999999999999 99999999999999764 89999999999999983 55644 4599
Q ss_pred eeEEEeccCccc
Q 026902 81 PMRIQYAKSKSD 92 (231)
Q Consensus 81 ~l~v~~~~~~~~ 92 (231)
.|.|.++.++..
T Consensus 75 ~v~v~~a~~k~~ 86 (89)
T 3d2w_A 75 SVHISNAEPKHN 86 (89)
T ss_dssp EEEEEECC----
T ss_pred EEEEEEcCCCCc
Confidence 999999876543
No 250
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.75 E-value=6.1e-18 Score=114.02 Aligned_cols=81 Identities=17% Similarity=0.279 Sum_probs=71.6
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEE-EecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVV-ALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~-~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
.....++|||+|||..+++++|+ ++|+.||.|..++ ++.+. ..+.|||+|.+.++|.+|+..|||..+.|++|+
T Consensus 11 ~~~~~~~l~V~nlp~~~t~~~l~----~~F~~~G~v~~~~~i~~~~-~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~ 85 (96)
T 2e44_A 11 KRQRIRKLQIRNIPPHLQWEVLD----SLLVQYGVVESCEQVNTDS-ETAVVNVTYSSKDQARQALDKLNGFQLENFTLK 85 (96)
T ss_dssp CCCSCCCEEEEEECSSSCHHHHH----HHHHHHSCEEEEEEECCSS-SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCE
T ss_pred CCCCCCEEEEEcCCCCCCHHHHH----HHHHhcCCeEEEEEeecCC-CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEE
Confidence 34557999999999999999999 9999999999995 65543 344599999999999999999999999999999
Q ss_pred EEeccCc
Q 026902 84 IQYAKSK 90 (231)
Q Consensus 84 v~~~~~~ 90 (231)
|.++.++
T Consensus 86 V~~a~~~ 92 (96)
T 2e44_A 86 VAYIPDE 92 (96)
T ss_dssp EEECCCC
T ss_pred EEEcCcc
Confidence 9999766
No 251
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=99.75 E-value=3.5e-18 Score=131.00 Aligned_cols=76 Identities=22% Similarity=0.354 Sum_probs=72.8
Q ss_pred CCCCEEEecCCC-CCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 154 APNNILFIQNLP-HETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 154 ~~~~~l~v~nlp-~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
+++++|||+||| ..+++++|+++|++||.|.+|.++++++|+|||+|.+.++|.+|+..|||..+.| ++|+|.||+
T Consensus 2 ~~~~~l~V~nL~~~~~~~~~L~~~F~~~G~v~~v~i~~~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-~~l~v~~s~ 78 (205)
T 3tyt_A 2 ADSPVLMVYGLDQSKMNCDRVFNVFCLYGNVEKVKFMKSKPGAAMVEMADGYAVDRAITHLNNNFMFG-QKMNVCVSK 78 (205)
T ss_dssp CCCSEEEEECCCTTTCCHHHHHHHHTTTSCEEEEEECTTSTTCEEEEESSHHHHHHHHHHHTTCEETT-EECEEEECS
T ss_pred CCCCEEEEeCCCcccCCHHHHHHHHHhcCCeEEEEEecCCCCEEEEEECCHHHHHHHHHHhCCCEECC-ceEEEEEcc
Confidence 367889999999 8999999999999999999999999888999999999999999999999999999 999999986
No 252
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.75 E-value=8.4e-19 Score=120.71 Aligned_cols=82 Identities=13% Similarity=0.101 Sum_probs=74.3
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCC---eEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeC
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGR---IFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFY 78 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~---v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~ 78 (231)
.+....++|||+|||+++|+++|+ ++|+.||. |..|.++. .|.++|||||+|.+.++|.+|+. +|+..+.
T Consensus 6 ~~~~~~~~l~V~nLp~~~te~~l~----~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~ 80 (107)
T 2lmi_A 6 EEVDDVFLIRAQGLPWSCTMEDVL----NFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMG 80 (107)
T ss_dssp CCCSSCCEEEEECCCSSCCSHHHH----HHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSS
T ss_pred CCCCCccEEEEeCCCCCCCHHHHH----HHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeC
Confidence 345678999999999999999999 99999998 88898887 47899999999999999999999 9999999
Q ss_pred CeeeEEEeccCc
Q 026902 79 DKPMRIQYAKSK 90 (231)
Q Consensus 79 g~~l~v~~~~~~ 90 (231)
|+.|+|.++.++
T Consensus 81 gr~i~V~~a~~~ 92 (107)
T 2lmi_A 81 QRYVEVYEINNE 92 (107)
T ss_dssp SSCCCCEECCHH
T ss_pred CeEEEEEECCHH
Confidence 999999998643
No 253
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=3.1e-18 Score=117.17 Aligned_cols=76 Identities=22% Similarity=0.400 Sum_probs=71.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
+.++|||+|||..+++++|+++|++||.|..+.++.++ +|+|||+|.+.++|.+|+..|||..+.| +.|+|.||
T Consensus 7 ~~~~l~V~nlp~~~~~~~l~~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a 85 (104)
T 1p1t_A 7 SLRSVFVGNIPYEATEEQLKDIFSEVGPVVSFRLVYDRETGKPKGYGFCEYQDQETALSAMRNLNGREFSG-RALRVDNA 85 (104)
T ss_dssp HHSCEEEESCCTTSCHHHHHHHHHTTSCCSEEEEEEETTTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSS-SCBEEEET
T ss_pred CccEEEEeCCCCcCCHHHHHHHHHhcCCeeEEEEEeCCCCCccceEEEEEECCHHHHHHHHHHhCCCeeCC-cEEEEEeC
Confidence 45779999999999999999999999999999998763 6899999999999999999999999998 99999998
Q ss_pred cC
Q 026902 230 KK 231 (231)
Q Consensus 230 ~~ 231 (231)
+.
T Consensus 86 ~~ 87 (104)
T 1p1t_A 86 AS 87 (104)
T ss_dssp TC
T ss_pred CC
Confidence 63
No 254
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=5.4e-18 Score=117.79 Aligned_cols=79 Identities=23% Similarity=0.333 Sum_probs=72.4
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCee--------EEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCcc
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFK--------EVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKI 218 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~--------~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i 218 (231)
.....++|||+|||..+++++|+++|++||.|. .+.++.++ +|||||+|.+.++|.+|+..|||..|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~ 90 (113)
T 2cpe_A 11 EDSDNSAIYVQGLNDSVTLDDLADFFKQCGVVKMNKRTGQPMIHIYLDKETGKPKGDATVSYEDPPTAKAAVEWFDGKDF 90 (113)
T ss_dssp CCCCCCEEEEECCCTTCCHHHHHHHHTTTSCBCBCSSSCCBSEECCBCTTTCSBCSEEEEEBSSHHHHHHHHHHHTTCEE
T ss_pred cCCCCCEEEEcCCCCCCCHHHHHHHHHhcCCEeEccccCccCEEEEEeCCCCCeeeEEEEEECCHHHHHHHHHHcCCCcc
Confidence 445778999999999999999999999999998 68888762 68999999999999999999999999
Q ss_pred CCCCCeEEEeccC
Q 026902 219 TPQNPMAITFAKK 231 (231)
Q Consensus 219 ~~~~~l~V~~a~~ 231 (231)
.+ ++|+|.||+.
T Consensus 91 ~g-~~l~V~~a~~ 102 (113)
T 2cpe_A 91 QG-SKLKVSLARK 102 (113)
T ss_dssp TT-EECEEECSSC
T ss_pred CC-CEEEEEECCC
Confidence 99 9999999874
No 255
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=99.75 E-value=4.4e-18 Score=116.28 Aligned_cols=73 Identities=29% Similarity=0.533 Sum_probs=68.8
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.+.++|||+|||..+++++|+++|++||.|..+.++ ++||||+|.+.++|.+|+..|||..|.+ ++|+|.||+
T Consensus 9 ~~~~~l~V~nl~~~~t~~~l~~~F~~~G~i~~v~~~---~~~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~ 81 (103)
T 2dgu_A 9 AKVKVLFVRNLANTVTEEILEKAFSQFGKLERVKKL---KDYAFIHFDERDGAVKAMEEMNGKDLEG-ENIEIVFAK 81 (103)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHHSCEEEEEEC---SSCEEEEESSHHHHHHHHHHHTTEEETT-EEEEEEECC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEE---CCEEEEEeCCHHHHHHHHHHHCCCccCC-CEEEEEEcC
Confidence 456789999999999999999999999999999987 4699999999999999999999999999 999999986
No 256
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=99.75 E-value=2.5e-18 Score=116.17 Aligned_cols=78 Identities=27% Similarity=0.536 Sum_probs=71.3
Q ss_pred CCCCCEEEecCCCCCCCHHHHH----HHhccCCCeeEEEEeeC--CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 153 AAPNNILFIQNLPHETTSSMLE----MLFQQYPGFKEVRMIEA--KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~----~~f~~~g~v~~v~~~~~--~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
.+++++|||+|||..+++++|+ ++|++||.|..+.+..+ .+|+|||+|.+.++|..|+..|||..++| ++|+|
T Consensus 5 ~~~~~~l~V~nLp~~~~~~~l~~~l~~~f~~~G~i~~v~i~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v 83 (97)
T 1nu4_A 5 TRPNHTIYINNLNEKIKKDELKKSLHAIFSRFGQILDILVSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYD-KPMRI 83 (97)
T ss_dssp -CCCSEEEEESCCTTSCHHHHHHHHHHHHGGGSCEEEEECCHHHHHTTCEEEEESSHHHHHHHHHHHTTCEETT-EECEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhCCCEEEEEEEcCCCcCcEEEEEeCCHHHHHHHHHHhCCCEECC-cEEEE
Confidence 4577899999999999999999 99999999999999753 36899999999999999999999999998 99999
Q ss_pred EeccC
Q 026902 227 TFAKK 231 (231)
Q Consensus 227 ~~a~~ 231 (231)
.||+.
T Consensus 84 ~~a~~ 88 (97)
T 1nu4_A 84 QYAKT 88 (97)
T ss_dssp EECSS
T ss_pred EEccC
Confidence 99973
No 257
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.75 E-value=6.8e-18 Score=115.53 Aligned_cols=75 Identities=23% Similarity=0.377 Sum_probs=69.6
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC------CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK------PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~------~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
..+.++|||+|||..+++++|+++|++|| |..|.+++++ +|||||+|.+.++|.+|+ .|||..|.+ +.|+|
T Consensus 12 ~~~~~~l~V~nlp~~~t~~~l~~~F~~~G-i~~v~i~~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V 88 (104)
T 1wi8_A 12 KSPPYTAFLGNLPYDVTEESIKEFFRGLN-ISAVRLPREPSNPERLKGFGYAEFEDLDSLLSAL-SLNEESLGN-KRIRV 88 (104)
T ss_dssp SSSCEEEEEESCCSSCCHHHHHHHTTTSC-EEEEECCBCSSCTTSBCSCEEEEESSHHHHHHHH-GGGTCEETT-EECEE
T ss_pred CCCCCEEEEeCCCCcCCHHHHHHHHHHCC-ceEEEEecCCCCCCCcCeEEEEEECCHHHHHHHH-hcCCCEeCC-cEEEE
Confidence 34668999999999999999999999999 9999998753 689999999999999999 999999999 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.+|+
T Consensus 89 ~~a~ 92 (104)
T 1wi8_A 89 DVAD 92 (104)
T ss_dssp EECC
T ss_pred EEcc
Confidence 9986
No 258
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.74 E-value=1.7e-18 Score=118.12 Aligned_cols=83 Identities=18% Similarity=0.374 Sum_probs=75.1
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
....++++|||+|||..+++++|+ ++|+.||.|..|.++. ++.++|||||+|.+.++|.+|+. ++..+.|+.
T Consensus 4 ~~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~ 77 (102)
T 2xs2_A 4 EGKIMPNTVFVGGIDVRMDETEIR----SFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKK 77 (102)
T ss_dssp CCEEEEEEEEEECCCTTCCHHHHH----HHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEE
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHH----HHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECCEE
Confidence 445678999999999999999999 9999999999999988 57899999999999999999999 999999999
Q ss_pred eEEEeccCccc
Q 026902 82 MRIQYAKSKSD 92 (231)
Q Consensus 82 l~v~~~~~~~~ 92 (231)
|.|.++..+..
T Consensus 78 l~v~~a~~~~~ 88 (102)
T 2xs2_A 78 LKLGPAIRKQN 88 (102)
T ss_dssp CEEEEEEECC-
T ss_pred EEEEECCcCcc
Confidence 99999875543
No 259
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.74 E-value=2.7e-18 Score=116.20 Aligned_cols=79 Identities=18% Similarity=0.242 Sum_probs=70.5
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
.....++|||+|||..+++++|+++|++||.|..+.++.+ .+|+|||+|.+.++|.+|+..|||..|++ ++|+|
T Consensus 11 ~~~~~~~l~v~nLp~~~t~~~l~~~F~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~V 89 (98)
T 2cqp_A 11 GKPGPTIIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-RKVKL 89 (98)
T ss_dssp CCCSSEEEEEESCCTTCCHHHHHHHTTTSCCCTTTCEEEECSSSCEEEEEEEEESCHHHHHHHHHHTTTCEETT-EECEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHHcCCccceEEEEECCCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCC-eEEEE
Confidence 3446688999999999999999999999999987666653 26899999999999999999999999999 99999
Q ss_pred EeccC
Q 026902 227 TFAKK 231 (231)
Q Consensus 227 ~~a~~ 231 (231)
.+++.
T Consensus 90 ~~a~~ 94 (98)
T 2cqp_A 90 VLGSG 94 (98)
T ss_dssp EESSC
T ss_pred EEcCC
Confidence 99863
No 260
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=9.7e-18 Score=114.53 Aligned_cols=75 Identities=21% Similarity=0.486 Sum_probs=69.6
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
..+.++|||+|||..+++++|+++|++|| |..+.+++++ +|||||+|.+.++|.+|+ .|||..|.+ ++|+|.
T Consensus 12 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~g-i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~ 88 (103)
T 2dng_A 12 TEPPYTAYVGNLPFNTVQGDIDAIFKDLS-IRSVRLVRDKDTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGD-RSLRVD 88 (103)
T ss_dssp SSSCEEEEEESCCTTCCHHHHHHHTTTSC-EEEEEEEECSSSCSEEEEEEEEESSHHHHHHHG-GGTTCEETT-EECEEE
T ss_pred CCCCeEEEEeCCCCCCCHHHHHHHHHhCC-ceEEEEeecCCCCccceEEEEEECCHHHHHHHH-hhCCCeECC-eEEEEE
Confidence 34678899999999999999999999997 9999999864 589999999999999999 899999999 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
||+
T Consensus 89 ~a~ 91 (103)
T 2dng_A 89 IAE 91 (103)
T ss_dssp ECC
T ss_pred Eec
Confidence 986
No 261
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.1e-18 Score=118.10 Aligned_cols=74 Identities=24% Similarity=0.411 Sum_probs=69.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
..++|||+|||..+++++|+++|++||.|..|.++.+ .+|||||+|.+.++|.+|+ .|||..|++ +.|+|.||
T Consensus 24 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~~a 101 (114)
T 2cq4_A 24 DARTVFCMQLAARIRPRDLEDFFSAVGKVRDVRIISDRNSRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLG-VPIIVQAS 101 (114)
T ss_dssp HHTEEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCSCCSSSCCCCEEEEESCGGGHHHHH-HHTTEEETT-EEEEEEEH
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCEeEEEEEecCCCCccCcEEEEEeCcHHHHHHHH-HcCCCEeCC-eEEEEEec
Confidence 4578999999999999999999999999999999864 3689999999999999999 999999999 99999998
Q ss_pred c
Q 026902 230 K 230 (231)
Q Consensus 230 ~ 230 (231)
+
T Consensus 102 ~ 102 (114)
T 2cq4_A 102 Q 102 (114)
T ss_dssp H
T ss_pred C
Confidence 5
No 262
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.60 E-value=1.2e-19 Score=126.83 Aligned_cols=85 Identities=28% Similarity=0.468 Sum_probs=77.5
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEE--------EEEec---CCCccceEEEEEcCHHHHHHHHHHh
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFD--------VVALK---TPKLRGQAWVVFSEVTAASNAVRQM 72 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~--------v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l 72 (231)
.+..+.++|||+|||..+++++|+ ++|++||.|.. |.++. ++.++|||||+|.+.++|.+|+..|
T Consensus 2 ~~~~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l 77 (116)
T 2lcw_A 2 QDNSDNNTIFVQGLGENVTIESVA----DYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWF 77 (116)
Confidence 356789999999999999999999 99999999988 77776 4788999999999999999999999
Q ss_pred CCceeCCeeeEEEeccCccc
Q 026902 73 QNFPFYDKPMRIQYAKSKSD 92 (231)
Q Consensus 73 ~g~~~~g~~l~v~~~~~~~~ 92 (231)
||..+.|++|+|.++.++..
T Consensus 78 ~g~~~~g~~l~V~~a~~~~~ 97 (116)
T 2lcw_A 78 DGKEFSGNPIKVSFATRRAD 97 (116)
Confidence 99999999999999876544
No 263
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=99.74 E-value=9.8e-18 Score=110.92 Aligned_cols=76 Identities=13% Similarity=0.259 Sum_probs=69.1
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
...+.++|||+|||..+++++|+++|++||.|..+.+++++ +|+|||+|.+.++|.+|+. ++|..++| +.|.|
T Consensus 7 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g-~~i~v 84 (87)
T 3s7r_A 7 NEEDAGKMFVGGLSWDTSKKDLKDYFTKFGEVVDCTIKMDPNTGRSRGFGFILFKDAASVEKVLD-QKEHRLDG-RVIDP 84 (87)
T ss_dssp CCSCTTEEEEECCCTTCCHHHHHHHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSTHHHHHHHH-SSCEEETT-EEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCEEEEEEeecCCCCccccEEEEEECCHHHHHHHHH-hCCCEECC-EEEEE
Confidence 34567889999999999999999999999999999998763 6899999999999999995 58889999 99999
Q ss_pred Eec
Q 026902 227 TFA 229 (231)
Q Consensus 227 ~~a 229 (231)
++|
T Consensus 85 ~~A 87 (87)
T 3s7r_A 85 KKA 87 (87)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 264
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=99.74 E-value=3.5e-18 Score=121.87 Aligned_cols=78 Identities=24% Similarity=0.433 Sum_probs=71.6
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeE--EEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCC----ccC
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE--VRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGF----KIT 219 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~--v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~----~i~ 219 (231)
....++++|||+|||..+|+++|+++|++||.|.. |++++++ +|||||+|.+. +|.+|+..|||. .++
T Consensus 18 ~~~~~~~~lfV~nL~~~~te~~L~~~F~~~G~v~~~~v~i~~d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~ 96 (131)
T 2m2b_A 18 SSENANDTIILRNLNPHSTMDSILGALAPYAVLSSSNVRVIKDKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTID 96 (131)
T ss_dssp CCSCCCCEEEECSCCTTCCSHHHHHHHGGGCCCCTTTEECCBCSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGG
T ss_pred CCCCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcceeeEEEEEcCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCC
Confidence 34467789999999999999999999999999976 9998864 79999999999 999999999999 999
Q ss_pred CCCCeEEEecc
Q 026902 220 PQNPMAITFAK 230 (231)
Q Consensus 220 ~~~~l~V~~a~ 230 (231)
| ++|+|.||+
T Consensus 97 g-r~l~V~~a~ 106 (131)
T 2m2b_A 97 G-KTINVEFAK 106 (131)
T ss_dssp G-CCCCCEECC
T ss_pred C-EEEEEEECC
Confidence 9 999999986
No 265
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.74 E-value=1.4e-18 Score=111.75 Aligned_cols=72 Identities=18% Similarity=0.296 Sum_probs=67.1
Q ss_pred EEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEec
Q 026902 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQYA 87 (231)
Q Consensus 11 ~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~~ 87 (231)
+|||+|||..+++++|+ ++|++||+|..+.+++ ++.++|||||+|.+.++|.+|+. +++..+.|+.|.|.++
T Consensus 1 ~l~v~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIR----EYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGLSKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHH----HHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTTBCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECCEEEEEEEC
Confidence 58999999999999999 9999999999998886 47899999999999999999999 5999999999999874
No 266
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=99.74 E-value=8.6e-18 Score=116.20 Aligned_cols=74 Identities=23% Similarity=0.384 Sum_probs=69.4
Q ss_pred CCCCCEEEecCCCCC-CCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 153 AAPNNILFIQNLPHE-TTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~-~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
....++|||+|||.. +++++|+++|++||.|..+.+ .+|||||+|.+.++|.+|+..|||..|++ ++|+|.||+
T Consensus 24 ~~~~~~l~V~nl~~~~~t~~~l~~~F~~~G~v~~v~i---~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~V~~a~ 98 (110)
T 1wf1_A 24 KSINSRVFIGNLNTALVKKSDVETIFSKYGRVAGCSV---HKGYAFVQYSNERHARAAVLGENGRVLAG-QTLDINMAG 98 (110)
T ss_dssp TTCSSEEEECSCCCSSCCHHHHHHHHGGGSCCSEEEE---ETTEEEEECSSSHHHHHHHHHHTTCEETT-EECCEEESC
T ss_pred CCCCcEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEE---eCCEEEEEECCHHHHHHHHHHcCCCEECC-eEEEEEECC
Confidence 345679999999999 999999999999999999999 56899999999999999999999999999 999999997
No 267
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.74 E-value=3e-17 Score=115.10 Aligned_cols=80 Identities=24% Similarity=0.316 Sum_probs=70.2
Q ss_pred CCCCE--EEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccce-EEEEEcCHHHHHHHHHHhCCceeCC--ee
Q 026902 7 PPNQT--IYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQ-AWVVFSEVTAASNAVRQMQNFPFYD--KP 81 (231)
Q Consensus 7 ~~~~~--v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~-afV~f~~~e~A~~a~~~l~g~~~~g--~~ 81 (231)
+++++ |||+|||+.+++++|+ ++|++||.|.+|++... .|+ |||+|.+.++|..|++.|||..|.| ++
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~----~~Fs~yG~V~~v~i~~~---~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~ 93 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLY----TVCNPVGKVQRIVIFKR---NGIQAMVEFESVLCAQKAKAALNGADIYAGCCT 93 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHH----HHHTTTSCEEEEEEEES---SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSE
T ss_pred CCCcEEEEEEcCcCCCCCHHHHH----HHHHhcCCEEEEEEEeC---CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeE
Confidence 34555 5799999999999998 99999999999998652 386 9999999999999999999999987 68
Q ss_pred eEEEeccCccch
Q 026902 82 MRIQYAKSKSDC 93 (231)
Q Consensus 82 l~v~~~~~~~~~ 93 (231)
|+|.+++++...
T Consensus 94 l~V~~Ak~~~l~ 105 (124)
T 2e5i_A 94 LKIEYARPTRLN 105 (124)
T ss_dssp EEEECCSCSCCC
T ss_pred EEEEEecCCcce
Confidence 999999877653
No 268
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=99.74 E-value=9.3e-18 Score=120.88 Aligned_cols=79 Identities=22% Similarity=0.451 Sum_probs=73.0
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
.....++|||+|||..+++++|+++|++||.|.+|.+++++ +|+|||+|.+.++|.+|+..|||..|.+ +.|+|
T Consensus 38 ~~~~~~~l~V~nLp~~~~~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v 116 (139)
T 1u6f_A 38 EPDVLRNLMVNYIPTTVDEVQLRQLFERYGPIESVKIVCDRETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILN-KRLKV 116 (139)
T ss_dssp CTTTTSEEEEESCSTTCCHHHHHHHHHHHSCEEEEEEEEETTTTEEEEEEEEEESSHHHHHHHHHHTTTEECSS-CEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-eEEEE
Confidence 44567899999999999999999999999999999998763 6899999999999999999999999999 99999
Q ss_pred EeccC
Q 026902 227 TFAKK 231 (231)
Q Consensus 227 ~~a~~ 231 (231)
.||+.
T Consensus 117 ~~a~~ 121 (139)
T 1u6f_A 117 ALAAS 121 (139)
T ss_dssp EESSC
T ss_pred EECCC
Confidence 99873
No 269
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.74 E-value=7.5e-18 Score=111.42 Aligned_cols=73 Identities=18% Similarity=0.368 Sum_probs=67.7
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccC----C-------CeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCC
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQY----G-------RIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQN 74 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~----g-------~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g 74 (231)
..+.++|||+|||..+++++|+ ++|++| | .|.++.+ ..++|||||+|.+.++|.+|+ .|||
T Consensus 3 ~~~~~~l~V~nLp~~~t~~~l~----~~F~~~~~~~g~~~~~~~~v~~~~~---~~~kg~afV~f~~~~~a~~A~-~l~g 74 (87)
T 2hzc_A 3 LGSARRLYVGNIPFGITEEAMM----DFFNAQMRLGGLTQAPGNPVLAVQI---NQDKNFAFLEFRSVDETTQAM-AFDG 74 (87)
T ss_dssp SGGGGEEEEESCCTTCCHHHHH----HHHHHHHHHTTCCSSSSCSEEEEEE---CSSSSEEEEEESSHHHHHHHG-GGTT
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHHHHhhhcccccCCCCcceEEEe---cCCCcEEEEEcCCHHHHHHHH-hcCC
Confidence 4678999999999999999999 999999 8 9999998 455999999999999999999 8999
Q ss_pred ceeCCeeeEEEe
Q 026902 75 FPFYDKPMRIQY 86 (231)
Q Consensus 75 ~~~~g~~l~v~~ 86 (231)
..+.|+.|+|.+
T Consensus 75 ~~~~g~~l~V~r 86 (87)
T 2hzc_A 75 IIFQGQSLKIRR 86 (87)
T ss_dssp CEETTEECEEEC
T ss_pred CEECCeEEEEeC
Confidence 999999999975
No 270
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=99.74 E-value=5.5e-18 Score=116.21 Aligned_cols=78 Identities=13% Similarity=0.360 Sum_probs=70.6
Q ss_pred CCCCCCEEEecCCCCCC------CHHHHHHHhccCCCeeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCccCCCC
Q 026902 152 TAAPNNILFIQNLPHET------TSSMLEMLFQQYPGFKEVRMIEA---KPGIAFVEFEDDVQSSMAMQALQGFKITPQN 222 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~------t~~~l~~~f~~~g~v~~v~~~~~---~~g~afV~f~~~~~A~~A~~~lng~~i~~~~ 222 (231)
.....++|||+|||..+ |+++|+++|++||.|..+.+++. ++|||||+|.+.++|.+|+..|||..|+| +
T Consensus 11 ~~~~~~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~v~~v~i~~~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g-~ 89 (105)
T 2nlw_A 11 ADGIDSVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK-Q 89 (105)
T ss_dssp CCSCCSEEEEESCCCCCTTTTTHHHHHHHHHHGGGSCEEEEECCCBTTBSCCEEEEEECSSSHHHHHHHHCSSEECST-T
T ss_pred CCCCCCEEEEeCCCcchhhhhHHHHHHHHHHHhcCCCEEEEEeeCCCCCeeeEEEEEECCHHHHHHHHHHhCCcccCC-C
Confidence 34456889999999999 78999999999999999999842 36999999999999999999999999999 8
Q ss_pred -CeEEEecc
Q 026902 223 -PMAITFAK 230 (231)
Q Consensus 223 -~l~V~~a~ 230 (231)
+|+|.+|+
T Consensus 90 ~~l~V~~a~ 98 (105)
T 2nlw_A 90 HTFRVNLFT 98 (105)
T ss_dssp CEEEEECSC
T ss_pred ceEEEEEcc
Confidence 99999985
No 271
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.74 E-value=5.2e-17 Score=112.94 Aligned_cols=78 Identities=19% Similarity=0.380 Sum_probs=71.1
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCcc--------C
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKI--------T 219 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i--------~ 219 (231)
.....++|||+|||..+++++|+++|++||.|..+.+++++ +|||||+|.+.++|.+|+..|||..| .
T Consensus 21 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~i~~~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~ 100 (114)
T 1x5o_A 21 QEQDPTNLYISNLPLSMDEQELENMLKPFGQVISTRILRDSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAP 100 (114)
T ss_dssp CCCCTTEEEEESCCTTCCHHHHHHTTTTTSCEEEEEEEECSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCC
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCC
Confidence 34566889999999999999999999999999999999863 58999999999999999999999999 4
Q ss_pred CCCCeEEEecc
Q 026902 220 PQNPMAITFAK 230 (231)
Q Consensus 220 ~~~~l~V~~a~ 230 (231)
+ ++|.|.||+
T Consensus 101 ~-~~l~v~~a~ 110 (114)
T 1x5o_A 101 T-EPLLCKFSG 110 (114)
T ss_dssp S-SCBEEEECC
T ss_pred C-CceeEEccC
Confidence 5 899999986
No 272
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=99.74 E-value=4e-18 Score=109.58 Aligned_cols=70 Identities=20% Similarity=0.301 Sum_probs=65.9
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 158 ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 158 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
+|||+|||..+++++|+++|++||.|..+.+++++ +|+|||+|.+.++|.+|+. |||..++| ++|+|.+|
T Consensus 1 ~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g-~~l~v~~A 75 (75)
T 2mss_A 1 KIFVGGLSVNTTVEDVKHYFEQFGKVDDAMLMFDKTTNRHRGFGFVTFESEDIVEKVCE-IHFHEINN-KMVECKKA 75 (75)
T ss_dssp CEEEECCCSSCCHHHHHHHHHTTSCCSEECCCBCSSSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSS-CCCEEECC
T ss_pred CEEEecCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcCcEEEEEECCHHHHHHHHH-CCCCEECC-EEEEEEeC
Confidence 48999999999999999999999999999998763 6899999999999999998 99999999 99999986
No 273
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=99.74 E-value=1e-17 Score=122.36 Aligned_cols=74 Identities=20% Similarity=0.285 Sum_probs=68.0
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCCccCC-CCCeEEEecc
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-PGIAFVEFEDDVQSSMAMQALQGFKITP-QNPMAITFAK 230 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-~g~afV~f~~~~~A~~A~~~lng~~i~~-~~~l~V~~a~ 230 (231)
.+|||+||++.+|+++|+++|++||.|.+|.+...+ +|+|||+|.+.++|..|+..|||..|.+ +++|+|+|||
T Consensus 47 l~l~VgNL~~~vted~L~~~Fs~fG~V~~V~i~~k~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak 122 (164)
T 1sjr_A 47 LRIIVENLFYPVTLDVLHQIFSKFGTVLKIITFTKNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSK 122 (164)
T ss_dssp EEEEECSCCSCCCHHHHHHHHHHHSCEEEEEEEESSSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECS
T ss_pred EEEEEeCcCCCCCHHHHHHHHHhcCCEEEEEEEeCCCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEec
Confidence 458899999999999999999999999999998653 6899999999999999999999999964 3999999997
No 274
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=99.74 E-value=1.6e-17 Score=117.36 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=72.6
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
....+++|||+|||..+++++|+++|++||.|..+.+..+ .+|+|||+|.+.++|.+|+..|||..+++ ++|+|.
T Consensus 31 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V~ 109 (124)
T 2kt5_A 31 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG-RPMDIQ 109 (124)
T ss_dssp CCSSCEEEEEESCCSSCCHHHHHHHHHTTSCCSEEEEECCSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSS-CEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEECCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECC-cEEEEE
Confidence 3456788999999999999999999999999999999886 36899999999999999999999999999 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
||.
T Consensus 110 ~a~ 112 (124)
T 2kt5_A 110 LVA 112 (124)
T ss_dssp EEC
T ss_pred EeC
Confidence 986
No 275
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.73 E-value=1e-17 Score=125.46 Aligned_cols=82 Identities=22% Similarity=0.377 Sum_probs=76.0
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
..++++|||+|||..+++++|+ ++|+.||.|..|.+.. ++.++|||||+|.+.++|.+|+..|||..+.|++|+
T Consensus 85 ~~~~~~l~V~nLp~~~te~~L~----~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~Gr~l~ 160 (177)
T 2f3j_A 85 VETGAKLLVSNLDFGVSDADIQ----ELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMD 160 (177)
T ss_dssp CTTCEEEEEECCCSCCCHHHHH----HHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSSSBCE
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECCEEEE
Confidence 3567899999999999999999 9999999999999987 488999999999999999999999999999999999
Q ss_pred EEeccCcc
Q 026902 84 IQYAKSKS 91 (231)
Q Consensus 84 v~~~~~~~ 91 (231)
|.++....
T Consensus 161 V~~a~~~~ 168 (177)
T 2f3j_A 161 IQLVASQI 168 (177)
T ss_dssp EEEESSGG
T ss_pred EEEecCCC
Confidence 99987543
No 276
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=1.3e-17 Score=116.34 Aligned_cols=78 Identities=21% Similarity=0.318 Sum_probs=71.7
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
....+.++|||+|||..+++++|+++|++||.|..+.++++ .+|||||+|.+.++|.+|+..||+ .|.+ ++|+
T Consensus 12 ~~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g-~~l~ 89 (116)
T 2cqd_A 12 QKDTTFTKIFVGGLPYHTTDASLRKYFEGFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAERACKDPNP-IIDG-RKAN 89 (116)
T ss_dssp CCSCSSSEEEEECCCSSCCHHHHHHHHHTTSCEEEEEESCCSSSCCCCSEEEEEESSHHHHHHHHTCSSC-EETT-EECE
T ss_pred cCCCCCCEEEEeCCCCCCCHHHHHHHHHhCCCeeEEEEEEcCCCCccceEEEEEECCHHHHHHHHHhCCC-cCCC-EEEE
Confidence 34557789999999999999999999999999999999886 368999999999999999999998 8998 9999
Q ss_pred EEecc
Q 026902 226 ITFAK 230 (231)
Q Consensus 226 V~~a~ 230 (231)
|.||+
T Consensus 90 V~~a~ 94 (116)
T 2cqd_A 90 VNLAY 94 (116)
T ss_dssp EEEST
T ss_pred EEEcc
Confidence 99985
No 277
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.73 E-value=1.4e-17 Score=114.72 Aligned_cols=75 Identities=15% Similarity=0.181 Sum_probs=69.4
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCC----CCCeEEEec
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITP----QNPMAITFA 229 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~----~~~l~V~~a 229 (231)
...++|||+|||..+++++|+++|++||.|..+.++.+ |||||+|.+.++|.+|+..|||..|.+ ++.|+|.+|
T Consensus 13 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a 90 (108)
T 1x4c_A 13 RSENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVD 90 (108)
T ss_dssp SCCCEEEEESCCSSCCHHHHHHHHGGGSCEEEEEEETT--TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEES
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEeEEEEecC--CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeC
Confidence 45688999999999999999999999999999999887 899999999999999999999999875 178999998
Q ss_pred c
Q 026902 230 K 230 (231)
Q Consensus 230 ~ 230 (231)
+
T Consensus 91 ~ 91 (108)
T 1x4c_A 91 G 91 (108)
T ss_dssp S
T ss_pred C
Confidence 6
No 278
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.73 E-value=6.3e-18 Score=119.07 Aligned_cols=78 Identities=19% Similarity=0.237 Sum_probs=70.1
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeE--EEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIF--DVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~--~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
+....++|||+|||+++|+++|+ ++|+.| .|. .|+++. +|+++|||||+|.+.++|.+|+. +++..|.||
T Consensus 38 ~~~~~~~lfVgnLp~~~te~dL~----~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~gR 111 (126)
T 2hgm_A 38 DSANDGFVRLRGLPFGCTKEEIV----QFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGHR 111 (126)
T ss_dssp CSSSCCEEEEECCCTTCCHHHHH----HHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTTB
T ss_pred CCCCCCEEEEeCCCCCCCHHHHH----HHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECCE
Confidence 34567999999999999999999 999999 576 888886 58899999999999999999999 588999999
Q ss_pred eeEEEecc
Q 026902 81 PMRIQYAK 88 (231)
Q Consensus 81 ~l~v~~~~ 88 (231)
.|.|.++.
T Consensus 112 ~I~V~~a~ 119 (126)
T 2hgm_A 112 YIEVFKSS 119 (126)
T ss_dssp CCCCEEEC
T ss_pred EEEEEECC
Confidence 99998875
No 279
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=111.36 Aligned_cols=81 Identities=15% Similarity=0.215 Sum_probs=69.9
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec-CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK-TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~-~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
......++|||+|||..+++++|+ ++|+.||.|.+|.+.+ ++. ||||+|.+.++|.+|+. |||..|.|+.|
T Consensus 3 ~~~~~~~~l~V~nl~~~~t~~~l~----~~F~~~G~v~~v~~~~~~g~---~afV~f~~~~~a~~ai~-l~g~~~~g~~l 74 (94)
T 2e5g_A 3 SGSSGLRSVFVSGFPRGVDSAQLS----EYFLAFGPVASVVMDKDKGV---FAIVEMGDVGAREAVLS-QSQHSLGGHRL 74 (94)
T ss_dssp SCCTTCCEEEEECCCTTCCHHHHH----HHGGGTSCEEEEEECSSSCC---EEEEEESSHHHHHHHHT-CSCCEETTEEC
T ss_pred CccCCCCEEEEECCCCCCCHHHHH----HHHHhcCCeEEEEEcCCCCc---EEEEEECCHHHHHHHHh-cCCeEECCEEE
Confidence 345677899999999999999999 9999999999983322 232 99999999999999999 99999999999
Q ss_pred EEEeccCccc
Q 026902 83 RIQYAKSKSD 92 (231)
Q Consensus 83 ~v~~~~~~~~ 92 (231)
.|.++..+..
T Consensus 75 ~V~~a~~~~~ 84 (94)
T 2e5g_A 75 RVRPREQKEF 84 (94)
T ss_dssp CCBCSCCSCC
T ss_pred EEEECCcCCC
Confidence 9998865543
No 280
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=99.73 E-value=1.1e-17 Score=122.71 Aligned_cols=75 Identities=15% Similarity=0.191 Sum_probs=69.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCC--CeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYP--GFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g--~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
..++|||+|||..+++++|+++|++|| .|.++.++.++ +|||||+|.+.++|.+|+..|||..|+| +.|+|.
T Consensus 54 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~v~~v~i~~d~~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~G-r~l~V~ 132 (156)
T 3n9u_C 54 RRAAVYVGSFSWWTTDQQLIQVIRSIGVYDVVELKFAENRANGQSKGYAEVVVASENSVHKLLELLPGKVLNG-EKVDVR 132 (156)
T ss_dssp --CEEEEECCCTTCCHHHHHHHHHHTTCCCEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHSTTCEETT-EECEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHCCccEEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCEECC-eEeEEE
Confidence 457899999999999999999999999 99999998763 6899999999999999999999999999 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
+|+
T Consensus 133 ~a~ 135 (156)
T 3n9u_C 133 PAT 135 (156)
T ss_dssp ECC
T ss_pred EcC
Confidence 985
No 281
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.73 E-value=3.7e-17 Score=114.65 Aligned_cols=76 Identities=28% Similarity=0.338 Sum_probs=68.3
Q ss_pred CCCCE--EEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcE-EEEEecCHHHHHHHHHHhcCCccCCC-CCeEEEec
Q 026902 154 APNNI--LFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGI-AFVEFEDDVQSSMAMQALQGFKITPQ-NPMAITFA 229 (231)
Q Consensus 154 ~~~~~--l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~-afV~f~~~~~A~~A~~~lng~~i~~~-~~l~V~~a 229 (231)
+++++ |||+||++.+++++|+++|++||.|.+|.+... .|+ |||+|.+.++|..|+..|||..|.++ ++|+|.||
T Consensus 21 ~ps~vl~l~V~NL~~~vt~~~L~~~Fs~yG~V~~v~i~~~-~Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~A 99 (124)
T 2e5i_A 21 GGNKVLLLSIQNPLYPITVDVLYTVCNPVGKVQRIVIFKR-NGIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYA 99 (124)
T ss_dssp CCCSEEEEEEESCCSCCCHHHHHHHHTTTSCEEEEEEEES-SSEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECC
T ss_pred CCCcEEEEEEcCcCCCCCHHHHHHHHHhcCCEEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEe
Confidence 45555 468999999999999999999999999999874 596 99999999999999999999999873 58999999
Q ss_pred c
Q 026902 230 K 230 (231)
Q Consensus 230 ~ 230 (231)
+
T Consensus 100 k 100 (124)
T 2e5i_A 100 R 100 (124)
T ss_dssp S
T ss_pred c
Confidence 7
No 282
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.73 E-value=7.3e-18 Score=131.28 Aligned_cols=80 Identities=14% Similarity=0.166 Sum_probs=73.5
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCC--CeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeee
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYG--RIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPM 82 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g--~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l 82 (231)
..++|||+|||+.+|+++|+ ++|+.|| .|.+|+|++ ++.++|||||+|.+.++|.+||..||+..|.|+.|
T Consensus 67 ~~~~lfVgnL~~~~te~~L~----~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l 142 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLT----EAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNP 142 (229)
T ss_dssp --CEEEEESCCTTCCHHHHH----HHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCC
T ss_pred CccEEEEeCCCCCCCHHHHH----HHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEe
Confidence 56789999999999999999 9999999 999999987 68899999999999999999999999999999999
Q ss_pred EEEeccCcc
Q 026902 83 RIQYAKSKS 91 (231)
Q Consensus 83 ~v~~~~~~~ 91 (231)
+|.++....
T Consensus 143 ~V~~a~~~~ 151 (229)
T 3q2s_C 143 VVTPVNKQF 151 (229)
T ss_dssp EEEECCHHH
T ss_pred EEEECCCCc
Confidence 999986543
No 283
>2ku7_A MLL1 PHD3-CYP33 RRM chimeric protein; transcriptional regulation, RRM domain, transcr; NMR {Homo sapiens}
Probab=99.73 E-value=1.5e-17 Score=119.90 Aligned_cols=78 Identities=19% Similarity=0.397 Sum_probs=71.5
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
....+.++|||+|||..+++++|+++|++||.|..+.++++ .+|+|||+|.+.++|.+|+..|||..|.+ ++|+
T Consensus 58 ~~~~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~ 136 (140)
T 2ku7_A 58 GSATTKRVLYVGGLAEEVDDKVLHAAFIPFGDITDIQIPLDYETEKHRGFAFVEFELAEDAAAAIDNMNESELFG-RTIR 136 (140)
T ss_dssp SSCSSCCEEEEECCCTTCCHHHHHHHHGGGSCEEEEECCCCTTTCCCCSEEEEEESCHHHHHHHHHHSTEEEETT-EEEE
T ss_pred CCCCCCcEEEEEeCCCCCCHHHHHHHHHhcCCEEEEEEeecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCEECC-EEEE
Confidence 34456789999999999999999999999999999999876 36999999999999999999999999998 9999
Q ss_pred EEec
Q 026902 226 ITFA 229 (231)
Q Consensus 226 V~~a 229 (231)
|.||
T Consensus 137 v~~A 140 (140)
T 2ku7_A 137 VNLA 140 (140)
T ss_dssp EEC-
T ss_pred EEeC
Confidence 9987
No 284
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=99.73 E-value=3.5e-18 Score=114.95 Aligned_cols=76 Identities=17% Similarity=0.233 Sum_probs=68.4
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
++.++|||+|||..+++++|+++|++||.|..+.++.+ .+|+|||+|.+.++|.+|+..|||..|.+ ++|+|.+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-r~l~v~~ 91 (95)
T 2ek1_A 13 PGPTVIKVQNMPFTVSIDEILDFFYGYQVIPGSVCLKYNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGS-RKVKLSG 91 (95)
T ss_dssp --CEEEEEECCCTTCCHHHHHHHTTTSCBCTTCCEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETT-EECEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEeCCCCCEeeEEEEEECCHHHHHHHHHHhCCCeECC-cEEEEEe
Confidence 35688999999999999999999999999987777763 25899999999999999999999999999 9999999
Q ss_pred cc
Q 026902 229 AK 230 (231)
Q Consensus 229 a~ 230 (231)
+.
T Consensus 92 a~ 93 (95)
T 2ek1_A 92 PS 93 (95)
T ss_dssp CC
T ss_pred cc
Confidence 85
No 285
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=3.5e-17 Score=110.54 Aligned_cols=76 Identities=20% Similarity=0.356 Sum_probs=69.2
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
...+.++|||+|+ .+++++|+++|++||.|..+.+.. .+|+|||+|.+.++|.+|+..|||..|.+ ++|+|.||+.
T Consensus 11 ~~~~~~~l~V~n~--~~t~~~l~~~F~~~G~i~~v~i~~-~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~v~~a~~ 86 (97)
T 1x5p_A 11 APRKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-PRNCAFVTYEKMESADQAVAELNGTQVES-VQLKVNIARK 86 (97)
T ss_dssp CCCCCSEEEEECS--SCCHHHHHHHHTTTSCEEEEEEET-TTTEEEEEESSHHHHHHHHHHTTTEEETT-EEEEEECCSS
T ss_pred CCCCCCEEEEcCC--CCCHHHHHHHHhhCCCEEEEEecC-CCCEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEEECCC
Confidence 3456789999996 899999999999999999999964 45899999999999999999999999998 9999999863
No 286
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.73 E-value=9.2e-18 Score=112.49 Aligned_cols=74 Identities=26% Similarity=0.397 Sum_probs=67.1
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCC-eeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC-CccCCCCCeEEEecc
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPG-FKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG-FKITPQNPMAITFAK 230 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~-v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng-~~i~~~~~l~V~~a~ 230 (231)
.+.++|||+|||..+++++|+++|++||. |..+.+. ++|||||+|.+.++|.+|+..||| ..+++ ++|+|.||+
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~vv~~~~~~--~~g~afV~f~~~~~A~~A~~~l~g~~~~~g-~~l~v~~a~ 81 (93)
T 2cqh_A 6 SGMNKLYIGNLSPAVTADDLRQLFGDRKLPLAGQVLL--KSGYAFVDYPDQNWAIRAIETLSGKVELHG-KIMEVDYSV 81 (93)
T ss_dssp CCCCCEEEECCCTTCCHHHHHHHHHHTTCCCSSCEEE--ETTEEEECCSCHHHHHHHHHHHTTTCEETT-EECEEEECC
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHHcCCceEEEEEc--CCCEEEEEECCHHHHHHHHHHccCCeeECC-EEEEEEEcc
Confidence 45678999999999999999999999999 6666653 368999999999999999999999 99999 999999986
No 287
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.73 E-value=1.7e-17 Score=112.84 Aligned_cols=75 Identities=17% Similarity=0.274 Sum_probs=67.5
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
...+.++|||+|||..+++++|+++|++||.| .++.+ .+|||||+|.+.++|.+|+..|||..|.+ ++|+|.
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v---~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~v~ 86 (101)
T 2fc9_A 11 WSGESKTLVLSNLSYSATEETLQEVFEKATFI---KVPQNQNGKSKGYAFIEFASFEDAKEALNSCNKREIEG-RAIRLE 86 (101)
T ss_dssp CSCCCSEEEEESCCTTCCHHHHHHHCSSCSEE---ECCBCSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETT-EEEEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhCCEE---EEEECCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCC-eEEEEE
Confidence 44577899999999999999999999999987 34443 36899999999999999999999999998 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
||+
T Consensus 87 ~a~ 89 (101)
T 2fc9_A 87 LQG 89 (101)
T ss_dssp ECS
T ss_pred EcC
Confidence 986
No 288
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.72 E-value=2.4e-17 Score=111.07 Aligned_cols=76 Identities=18% Similarity=0.316 Sum_probs=69.3
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEE-EeeCC-CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVR-MIEAK-PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~-~~~~~-~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
...++|||+|||..+++++|+++|++||.|..++ ++.++ .+.|||+|.+.++|.+|+..|||..|++ ++|+|.+|+
T Consensus 13 ~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~~~~i~~~~~~~~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~V~~a~ 90 (96)
T 2e44_A 13 QRIRKLQIRNIPPHLQWEVLDSLLVQYGVVESCEQVNTDSETAVVNVTYSSKDQARQALDKLNGFQLEN-FTLKVAYIP 90 (96)
T ss_dssp CSCCCEEEEEECSSSCHHHHHHHHHHHSCEEEEEEECCSSSSEEEEEEESSHHHHHHHHHHHTTCBCSS-CBCEEEECC
T ss_pred CCCCEEEEEcCCCCCCHHHHHHHHHhcCCeEEEEEeecCCCCCEEEEEECCHHHHHHHHHHhCCCEECC-cEEEEEEcC
Confidence 3467899999999999999999999999999994 77653 4569999999999999999999999998 999999986
No 289
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=3.4e-18 Score=120.11 Aligned_cols=77 Identities=18% Similarity=0.229 Sum_probs=69.7
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCe----EEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCe
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRI----FDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDK 80 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v----~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~ 80 (231)
...++|||+|||+++|++||+ ++|+.||.| ..|.|+. +++++|||||+|.+.++|.+|+.. |+..|.||
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~----~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR 95 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVV----AFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKR 95 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHH----HHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSC
T ss_pred CCCCEEEEeCCCCCCCHHHHH----HHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCe
Confidence 457899999999999999999 999999975 5777775 688999999999999999999995 99999999
Q ss_pred eeEEEecc
Q 026902 81 PMRIQYAK 88 (231)
Q Consensus 81 ~l~v~~~~ 88 (231)
.|.|..+.
T Consensus 96 ~i~V~~a~ 103 (123)
T 2dha_A 96 YIELFRST 103 (123)
T ss_dssp EECCEEEC
T ss_pred EEEEEECC
Confidence 99998874
No 290
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=99.72 E-value=2.2e-17 Score=121.25 Aligned_cols=78 Identities=22% Similarity=0.308 Sum_probs=72.4
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
...+.++|||+|||..+++++|.++|++||.|..|.++.++ +|||||+|.+.++|.+|+..|||..|.+ ++|+|
T Consensus 35 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g-~~l~V 113 (156)
T 1h2v_Z 35 LLKKSCTLYVGNLSFYTTEEQIYELFSKSGDIKKIIMGLDKMKKTACGFCFVEYYSRADAENAMRYINGTRLDD-RIIRT 113 (156)
T ss_dssp TTTTCCEEEEESCCTTCCHHHHHHHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHTTTSEETT-EECEE
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHhCCCEECC-eEEEE
Confidence 33467899999999999999999999999999999998863 5899999999999999999999999998 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.||+
T Consensus 114 ~~a~ 117 (156)
T 1h2v_Z 114 DWDA 117 (156)
T ss_dssp EEES
T ss_pred EECC
Confidence 9986
No 291
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=114.41 Aligned_cols=77 Identities=21% Similarity=0.302 Sum_probs=71.4
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
.....++|||+|||..+++++|+++|++||.|..|.+++++ +|||||+|.+.++|.+|+.. ||..|.+ +.|+|
T Consensus 12 ~~~~~~~l~V~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g-~~l~V 89 (105)
T 2dh8_A 12 GADEIGKLFVGGLDWSTTQETLRSYFSQYGEVVDCVIMKDKTTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDG-RNIDP 89 (105)
T ss_dssp CSSSSSEECCBSCCTTCCHHHHHHHHHTTSCEEEEEEEECSSSCCEEEEEEEEESSTTHHHHHHHH-CSEEETT-EEEBC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeeCCCCCCcceEEEEEECCHHHHHHHHHh-CCCeECC-EEEEE
Confidence 44567889999999999999999999999999999999863 58999999999999999998 9999999 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.+|+
T Consensus 90 ~~a~ 93 (105)
T 2dh8_A 90 KPCT 93 (105)
T ss_dssp CCSC
T ss_pred EEcc
Confidence 9986
No 292
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=99.72 E-value=9.6e-18 Score=111.24 Aligned_cols=74 Identities=16% Similarity=0.320 Sum_probs=68.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
..++|||+|||..+++++|+++|++| .|..+.+. ..+|+|||+|.+.++|.+|+..|||..+++ ++|+|+||+.
T Consensus 4 ~~~~l~V~nLp~~~t~~~l~~~F~~~-~v~~~~i~-~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~V~~a~~ 77 (88)
T 1wg1_A 4 GSSGILVKNLPQDSNCQEVHDLLKDY-DLKYCYVD-RNKRTAFVTLLNGEQAQNAIQMFHQYSFRG-KDLIVQLQPT 77 (88)
T ss_dssp CCCCEEEESCCSSCCHHHHHHHTCSS-CCCCEEEE-GGGTEEEECCSCHHHHHHHHHHHTTEEETT-EEEEEEECCC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhhC-CeEEEEEe-CCCcEEEEEECCHHHHHHHHHHhCCCeECC-cEEEEEEcCC
Confidence 55779999999999999999999999 99999886 456999999999999999999999999999 9999999863
No 293
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.72 E-value=2.5e-17 Score=109.86 Aligned_cols=76 Identities=12% Similarity=0.206 Sum_probs=70.0
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
....++|||+|||..+++++|+++|++| .|..+.++++. +|+|||+|.+.++|.+|+. |||..|++ +.|.|.+
T Consensus 7 ~~~~~~l~v~nLp~~~t~~~l~~~F~~~-~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~g-r~i~v~~ 83 (91)
T 2dgw_A 7 GTTCHTVKLRGAPFNVTEKNVMEFLAPL-KPVAIRIVRNAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGG-RYIEVFR 83 (91)
T ss_dssp CCCCCEEEEECCCSSCCHHHHHHHHTTS-CCSEEEEEECTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETT-EEEEEEE
T ss_pred CCCccEEEEECCCCCCCHHHHHHHHhhC-CceEEEEEECCCCCCceEEEEEECCHHHHHHHHH-hCCceeCC-cEEEEEE
Confidence 3467889999999999999999999999 99999998863 5799999999999999999 99999999 9999999
Q ss_pred ccC
Q 026902 229 AKK 231 (231)
Q Consensus 229 a~~ 231 (231)
|+.
T Consensus 84 a~~ 86 (91)
T 2dgw_A 84 EKS 86 (91)
T ss_dssp ESS
T ss_pred CCc
Confidence 863
No 294
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.72 E-value=1.5e-17 Score=115.81 Aligned_cols=76 Identities=17% Similarity=0.261 Sum_probs=66.1
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCee-----
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP----- 81 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~----- 81 (231)
...++|||+|||+++++++|+ ++|+.||.|..|.++.+ |||||+|.+.++|.+|+..|||..|.|+.
T Consensus 14 r~~~~l~V~nLp~~~t~~~l~----~~F~~~G~v~~~~i~~~----g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~ 85 (115)
T 3beg_B 14 RSENRVVVSGLPPSGSWQDLK----DHMREAGDVCYADVYRD----GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAY 85 (115)
T ss_dssp ---CCEEEEECCSSCCTTHHH----HHHGGGSCEEEEEECTT----SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCB
T ss_pred CCCcEEEEeCCCCCCCHHHHH----HHHHhcCCeEEEEEecC----CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEE
Confidence 467899999999999999999 99999999999999655 99999999999999999999999999998
Q ss_pred eEEEeccCc
Q 026902 82 MRIQYAKSK 90 (231)
Q Consensus 82 l~v~~~~~~ 90 (231)
++|..+.++
T Consensus 86 i~v~~~~~~ 94 (115)
T 3beg_B 86 IRVKVDGPR 94 (115)
T ss_dssp CEEEECC--
T ss_pred EEeccCCCC
Confidence 666665543
No 295
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=3.6e-17 Score=113.91 Aligned_cols=78 Identities=27% Similarity=0.501 Sum_probs=70.1
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCe----eEEEEeeC-CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGF----KEVRMIEA-KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v----~~v~~~~~-~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
..++++|||+|||..+++++|.++|++||.| ..+.+..+ .+|||||+|.+.++|.+|+..|||..|.+ ++|+|.
T Consensus 22 ~~~~~~l~V~nLp~~~t~~~l~~~f~~~G~v~~~~~~~~~~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g-~~l~v~ 100 (115)
T 2cpx_A 22 GEPNKVLYLKNLSPRVTERDLVSLFARFQEKKGPPIQFRMMTGRMRGQAFITFPNKEIAWQALHLVNGYKLYG-KILVIE 100 (115)
T ss_dssp CSCCSEEEEECCCTTCCHHHHHHHTHHHHHSSSSCCEEEEECSSSCSEEEEECSSHHHHHHHHHHSTTCBCSS-CBCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCccceEEEEEcCCCccceEEEEEECCHHHHHHHHHHhCCCEeCC-cEEEEE
Confidence 3467899999999999999999999999998 56666654 36999999999999999999999999998 999999
Q ss_pred eccC
Q 026902 228 FAKK 231 (231)
Q Consensus 228 ~a~~ 231 (231)
||+.
T Consensus 101 ~a~~ 104 (115)
T 2cpx_A 101 FGKN 104 (115)
T ss_dssp ECCC
T ss_pred EccC
Confidence 9963
No 296
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=99.72 E-value=8.8e-18 Score=108.48 Aligned_cols=71 Identities=23% Similarity=0.345 Sum_probs=66.7
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
++|||+|||..+++++|+++|++||.|..+.+++++ +|+|||+|.+.++|.+|+..+| ..++| ++|+|.+|
T Consensus 1 ~~l~v~nlp~~~t~~~l~~~F~~~G~v~~v~i~~~~~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g-~~l~v~~a 76 (77)
T 1uaw_A 1 CKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDS-KTIDPKVA 76 (77)
T ss_dssp CCEEEESCCSSCCSHHHHHHHTTTSCCCCEEEECCCCSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSS-CCCEEEEC
T ss_pred CEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEecCCCCCCcCceEEEEEcCHHHHHHHHHhCC-CccCC-EEEEEEec
Confidence 369999999999999999999999999999998863 6899999999999999999999 99998 99999997
No 297
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=99.72 E-value=5.3e-17 Score=119.83 Aligned_cols=80 Identities=24% Similarity=0.412 Sum_probs=74.8
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
...+.++|||+|||..+++++|+ ++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|+..|||..+.|++
T Consensus 83 ~~~~~~~l~v~nl~~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~ 158 (166)
T 3md3_A 83 SSDDTFNLFVGDLNVNVDDETLR----NAFKDFPSYLSGHVMWDMQTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRP 158 (166)
T ss_dssp CCTTCEEEEEESCCTTCCHHHHH----HHHTTSTTEEEEEEEECTTTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEE
T ss_pred CCCCCceEEECCCCCCCCHHHHH----HHHhccCCeeEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHhCCCccCCcE
Confidence 34568899999999999999999 9999999999999986 5889999999999999999999999999999999
Q ss_pred eEEEecc
Q 026902 82 MRIQYAK 88 (231)
Q Consensus 82 l~v~~~~ 88 (231)
|+|.|++
T Consensus 159 i~v~~a~ 165 (166)
T 3md3_A 159 LRINWAA 165 (166)
T ss_dssp CEEEESC
T ss_pred EEEEecC
Confidence 9999985
No 298
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.72 E-value=3.2e-18 Score=122.79 Aligned_cols=80 Identities=14% Similarity=0.165 Sum_probs=71.3
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
....++|||+|||+++|++||+ ++|+.|| |.+|.|++ +++++|||||+|.+.++|.+|+ .+|+..|.||.|.
T Consensus 43 ~~~~~~lfV~nLp~~~te~dL~----~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~ 116 (139)
T 2hgn_A 43 STTGHCVHMRGLPYKATENDIY----NFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIE 116 (139)
T ss_dssp --CCCCEECCSCCTTCCHHHHH----HHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCC
T ss_pred CCCCCEEEEeCCCCCCCHHHHH----HHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEE
Confidence 3567899999999999999999 9999999 66898887 5889999999999999999999 5999999999999
Q ss_pred EEeccCcc
Q 026902 84 IQYAKSKS 91 (231)
Q Consensus 84 v~~~~~~~ 91 (231)
|.++....
T Consensus 117 V~~a~~~~ 124 (139)
T 2hgn_A 117 LFLNSTTG 124 (139)
T ss_dssp CEECCCSC
T ss_pred EEECCCCC
Confidence 99886544
No 299
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=99.72 E-value=2.6e-17 Score=127.03 Aligned_cols=81 Identities=26% Similarity=0.407 Sum_probs=74.6
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec-CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK-TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~-~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
..++|||+|||..+|+++|+ ++|+.||.|..|++++ .+.++|||||+|.+.++|.+|+..|||..|.|++|+|.+
T Consensus 102 ~~~~l~v~nl~~~~t~~~l~----~~F~~~G~i~~~~i~~d~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~ 177 (213)
T 4f02_A 102 GVGNIFIKNLDKSIDNKALY----DTFSAFGNILSCKVVCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGR 177 (213)
T ss_dssp CTTEEEEESCCTTCCHHHHH----HHHGGGSCEEEEEEEEETTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEE
T ss_pred ccccceECCcccccHHHHHH----HHHhhcCCeEEEEeeccCCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEE
Confidence 46799999999999999999 9999999999999987 456899999999999999999999999999999999999
Q ss_pred ccCccc
Q 026902 87 AKSKSD 92 (231)
Q Consensus 87 ~~~~~~ 92 (231)
+.++..
T Consensus 178 a~~~~~ 183 (213)
T 4f02_A 178 FKSRKE 183 (213)
T ss_dssp CCCHHH
T ss_pred cCCCcc
Confidence 875543
No 300
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=99.72 E-value=2.5e-17 Score=109.36 Aligned_cols=74 Identities=23% Similarity=0.310 Sum_probs=63.5
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCcc--CCCCCeEEEec
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI--TPQNPMAITFA 229 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i--~~~~~l~V~~a 229 (231)
...+..+|||+|||.++|+++|+++|++||.|.++.++++++|||||+|.+.++|. .++|..+ .+ +.|.|.+|
T Consensus 7 ~~~~~~~l~V~~Lp~~~te~~L~~~F~~~G~i~~v~i~~~srGfaFV~F~~~~~A~----~~~~~~~~~~g-~~v~v~~a 81 (89)
T 3d2w_A 7 HHHHGSKVFVGRCTEDMTAEELQQFFCQYGEVVDVFIPKPFRAFAFVTFADDKVAQ----SLCGEDLIIKG-ISVHISNA 81 (89)
T ss_dssp ----CCEEEEESCCTTCCHHHHHHHHTTTSCEEEEECCSSCCSEEEEEESCHHHHH----HHTTCEEEETT-EEEEEEEC
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHhccCCEEEEEEeeCCCCEEEEEECCHHHHH----HHcCCCcccCC-EEEEEEEc
Confidence 34577889999999999999999999999999999999988999999999999987 3667655 46 99999998
Q ss_pred c
Q 026902 230 K 230 (231)
Q Consensus 230 ~ 230 (231)
+
T Consensus 82 ~ 82 (89)
T 3d2w_A 82 E 82 (89)
T ss_dssp C
T ss_pred C
Confidence 6
No 301
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.72 E-value=2.1e-17 Score=114.04 Aligned_cols=76 Identities=24% Similarity=0.351 Sum_probs=69.5
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCC-eeEEEEe-eC-----CCcEEEEEecCHHHHHHHHHHhc--CCccCCCCCe
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPG-FKEVRMI-EA-----KPGIAFVEFEDDVQSSMAMQALQ--GFKITPQNPM 224 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~-v~~v~~~-~~-----~~g~afV~f~~~~~A~~A~~~ln--g~~i~~~~~l 224 (231)
.+.++|||+|||..+++++|+++|++||. |..+.++ .+ .+|||||+|.+.++|..|+..|| +..+.+ +.|
T Consensus 6 ~~~~~l~V~nLp~~~t~~~l~~~f~~~G~~v~~v~i~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g-~~l 84 (109)
T 2dis_A 6 SGNCRLFIGGIPKMKKREEILEEIAKVTEGVLDVIVYASAADKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWG-HQI 84 (109)
T ss_dssp CCSEEEEEECCCTTSCHHHHHHHHHHHSTTEEEEECCSSSCTTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTT-BCC
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHhcCCceEEEEEccCCCCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecC-CeE
Confidence 36788999999999999999999999998 9999998 32 46999999999999999999996 599999 999
Q ss_pred EEEecc
Q 026902 225 AITFAK 230 (231)
Q Consensus 225 ~V~~a~ 230 (231)
+|.||+
T Consensus 85 ~V~~a~ 90 (109)
T 2dis_A 85 AVDWAE 90 (109)
T ss_dssp EEEESC
T ss_pred EEEEcC
Confidence 999996
No 302
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=99.71 E-value=8.9e-18 Score=109.62 Aligned_cols=70 Identities=14% Similarity=0.400 Sum_probs=64.1
Q ss_pred CEEEecCCCCCC------CHHHHHHHhccCCCeeEEEEeeC---CCcEEEEEecCHHHHHHHHHHhcCCccCCCC-CeEE
Q 026902 157 NILFIQNLPHET------TSSMLEMLFQQYPGFKEVRMIEA---KPGIAFVEFEDDVQSSMAMQALQGFKITPQN-PMAI 226 (231)
Q Consensus 157 ~~l~v~nlp~~~------t~~~l~~~f~~~g~v~~v~~~~~---~~g~afV~f~~~~~A~~A~~~lng~~i~~~~-~l~V 226 (231)
++|||+|||..+ ++++|+++|++||.|.++.+++. ++|+|||+|.+.++|.+|+..|||..++| + +|+|
T Consensus 2 ~~l~V~nLp~~~~~~~~~t~~~l~~~F~~~G~i~~v~i~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-~~~l~V 80 (81)
T 2krb_A 2 SVIVVDNVPQVGPDRLEKLKNVIHKIFSKFGKITNDFYPEEDGKTKGYIFLEYASPAHAVDAVKNADGYKLDK-QHTFRV 80 (81)
T ss_dssp CEEEEESCCCCCTTTHHHHHHHHHHHHHTTCCEEEEECCCBTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSS-SSCCCC
T ss_pred CEEEEeCCCCCcHHHHHHHHHHHHHHHhhcCCeEEEEecCCCCcEeEEEEEEECCHHHHHHHHHHhcCcccCC-ceeEEe
Confidence 679999999999 77999999999999999998752 36999999999999999999999999999 8 8887
Q ss_pred E
Q 026902 227 T 227 (231)
Q Consensus 227 ~ 227 (231)
.
T Consensus 81 ~ 81 (81)
T 2krb_A 81 N 81 (81)
T ss_dssp C
T ss_pred C
Confidence 3
No 303
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.5e-17 Score=117.50 Aligned_cols=76 Identities=14% Similarity=0.234 Sum_probs=67.1
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEee-C----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIE-A----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~-~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
.....+|||+|||..+++++|.++|++||.|..+.++. . .+|||||+|.+.++|.+|+. |||..|++ +.|.|.
T Consensus 22 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~~~~~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g-r~i~V~ 99 (124)
T 1wel_A 22 HEAGFCVYLKGLPFEAENKHVIDFFKKLDIVEDSIYIAYGPNGKATGEGFVEFRNEADYKAALC-RHKQYMGN-RFIQVH 99 (124)
T ss_dssp CCCCCEEEEECCCTTCCHHHHHHHSCSSCBCTTTCEEEECTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTT-SCBEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHhcCCccceEEEEECCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECC-cEEEEE
Confidence 34568899999999999999999999999998744433 2 26899999999999999999 99999999 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
+|+
T Consensus 100 ~a~ 102 (124)
T 1wel_A 100 PIT 102 (124)
T ss_dssp EEC
T ss_pred ECC
Confidence 986
No 304
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=99.71 E-value=5.3e-18 Score=112.95 Aligned_cols=72 Identities=25% Similarity=0.399 Sum_probs=67.3
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
++|||+|||..+++++|+++|++||.|.++.+.+++ +|+|||+|.+.+ |.+|+..|||..++| ++|+|.+|.
T Consensus 2 ~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g-~~l~V~~a~ 78 (90)
T 2ki2_A 2 RNIYVGNLVYSATSEQVKELFSQFGKVFNVKLIYDRETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMG-RTIRVTEAN 78 (90)
T ss_dssp EEEEEEEECTTSSHHHHTTTHHHHTCCSEEEECCCSSSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSS-SSCSEEEC-
T ss_pred cEEEECCCCCCCCHHHHHHHHHhcCCEEEEEEEEcCCCCCcceEEEEEECCHH-HHHHHHHhCCCEECC-eEEEEEEcC
Confidence 479999999999999999999999999999998753 689999999999 999999999999999 999999986
No 305
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.71 E-value=4.2e-17 Score=114.52 Aligned_cols=78 Identities=19% Similarity=0.347 Sum_probs=71.4
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
..++++|||+|+ ++++++|+ ++|+.||.|.+|.+ ..++|||||+|.+.++|.+|+..|||..+.|++|.|.
T Consensus 36 ~~~~~~lfVgnl--~~te~~L~----~~F~~~G~I~~v~i---~~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~ 106 (121)
T 2bz2_A 36 PRKGNTLYVYGE--DMTPTLLR----GAFSPFGNIIDLSM---DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVN 106 (121)
T ss_dssp CCCCCEEEEECS--SCCHHHHH----HHHSTTCCCSCEEE---ETTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEE
T ss_pred CCCCCEEEEcCC--CCCHHHHH----HHHHccCCEEEEEE---eCCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEE
Confidence 356899999996 69999999 99999999999999 4789999999999999999999999999999999999
Q ss_pred eccCccc
Q 026902 86 YAKSKSD 92 (231)
Q Consensus 86 ~~~~~~~ 92 (231)
++.++..
T Consensus 107 ~a~~~~~ 113 (121)
T 2bz2_A 107 IARKQPM 113 (121)
T ss_dssp ECCSSCC
T ss_pred EeCCCCC
Confidence 9976643
No 306
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=99.71 E-value=3.2e-17 Score=114.19 Aligned_cols=73 Identities=15% Similarity=0.207 Sum_probs=66.1
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCC-----eEEEec
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNP-----MAITFA 229 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~-----l~V~~a 229 (231)
..++|||+|||..+++++|.++|++||.|..+.++.+ |||||+|.+.++|.+|+..|||..|++ +. |+|..+
T Consensus 15 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~~~i~~~--g~afV~f~~~~~a~~Ai~~l~g~~~~g-r~~~~~~i~v~~~ 91 (115)
T 3beg_B 15 SENRVVVSGLPPSGSWQDLKDHMREAGDVCYADVYRD--GTGVVEFVRKEDMTYAVRKLDNTKFRS-HEGETAYIRVKVD 91 (115)
T ss_dssp --CCEEEEECCSSCCTTHHHHHHGGGSCEEEEEECTT--SEEEEEESSHHHHHHHHHHHTTCBCCC-TTSCCCBCEEEEC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEecC--CEEEEEECCHHHHHHHHHHhCCCEECC-cEeeeEEEEeccC
Confidence 4577999999999999999999999999999999877 899999999999999999999999999 98 666654
Q ss_pred c
Q 026902 230 K 230 (231)
Q Consensus 230 ~ 230 (231)
+
T Consensus 92 ~ 92 (115)
T 3beg_B 92 G 92 (115)
T ss_dssp C
T ss_pred C
Confidence 3
No 307
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=99.71 E-value=1.7e-17 Score=117.13 Aligned_cols=74 Identities=16% Similarity=0.298 Sum_probs=69.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
..++|||+|||..+++++|+++|++||.|..+.+++++ +|||||+|.+.++|.+|+ .|||..|++ +.|+|.|+
T Consensus 35 ~~~~l~V~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g-~~l~V~~a 112 (124)
T 2jwn_A 35 DKRSVYVGNVDYGSTAQDLEAHFSSCGSINRITILCDKFSGHPKGYAYIEFAERNSVDAAV-AMDETVFRG-RTIKVLPK 112 (124)
T ss_dssp HHTEEEEEEECTTCCHHHHHHHHHTTSCEEEEEEEEECTTSSCEEEEEEEESSHHHHHHHH-TTTTCEETT-EECEEEES
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCCCCCcccEEEEEECCHHHHHHHH-hcCCCeECC-eEEEEEEC
Confidence 45789999999999999999999999999999998753 689999999999999999 899999999 99999998
Q ss_pred c
Q 026902 230 K 230 (231)
Q Consensus 230 ~ 230 (231)
+
T Consensus 113 ~ 113 (124)
T 2jwn_A 113 R 113 (124)
T ss_dssp S
T ss_pred C
Confidence 6
No 308
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.71 E-value=1.8e-17 Score=109.91 Aligned_cols=79 Identities=23% Similarity=0.416 Sum_probs=67.7
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
..++++|||+|||..+++++|+ ++|++||.|.+|+++++ ++|||||+|.+.++|++|.. .+..+.|++|.|.
T Consensus 2 ~~~~~~l~V~nLp~~~te~~l~----~~F~~~G~i~~v~i~~~--~~g~afV~f~~~~~a~~~~~--~~~~~~g~~l~v~ 73 (88)
T 1wf0_A 2 SSGSSGVFVGRCTGDMTEDELR----EFFSQYGDVMDVFIPKP--FRAFAFVTFADDQIAQSLCG--EDLIIKGISVHIS 73 (88)
T ss_dssp CSCCCEEEEESCCSSSCHHHHH----HHSTTTSCCCEEECCSS--CCSCCEEECSCHHHHHHTTT--CEEEETTEEEEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHH----HHHHHcCCeeEEEEecC--CCCEEEEEECCHHHHHHHhc--CCceeCCEEEEEE
Confidence 4568999999999999999999 99999999999999754 79999999999999986533 1355689999999
Q ss_pred eccCccc
Q 026902 86 YAKSKSD 92 (231)
Q Consensus 86 ~~~~~~~ 92 (231)
++.++..
T Consensus 74 ~a~~~~~ 80 (88)
T 1wf0_A 74 NAEPKHN 80 (88)
T ss_dssp CCCCCCC
T ss_pred ecCCCCC
Confidence 9887654
No 309
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.8e-17 Score=109.95 Aligned_cols=77 Identities=16% Similarity=0.236 Sum_probs=69.1
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeE-EEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE-VRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~-v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
.....+|||+|||..+++++|+++|++||.|.. +.++.+ .+|||||+|.++++|.+|+.. ||..+++ +.|.|.
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~v~~~v~i~~~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~g-r~i~v~ 89 (104)
T 1wg5_A 12 TANDGFVRLRGLPFGCSKEEIVQFFSGLEIVPNGMTLPVDFQGRSTGEAFVQFASQEIAEKALKK-HKERIGH-RYIEIF 89 (104)
T ss_dssp CSCCCEEEEESCCTTCCHHHHHHHTTTCCEEEEEEECCBCSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSS-SCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHhcCCcceeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CcchhCC-cEEEEE
Confidence 345688999999999999999999999999987 878764 368999999999999999997 9999999 999999
Q ss_pred eccC
Q 026902 228 FAKK 231 (231)
Q Consensus 228 ~a~~ 231 (231)
++.+
T Consensus 90 ~~~~ 93 (104)
T 1wg5_A 90 KSSR 93 (104)
T ss_dssp EECT
T ss_pred ECCH
Confidence 8763
No 310
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.70 E-value=1.5e-16 Score=108.67 Aligned_cols=80 Identities=16% Similarity=0.219 Sum_probs=70.2
Q ss_pred CCCCCEEEEeCCCC-----ccCHHHHHHHHHHhhccCCCeEEEEEecC----CCccceEEEEEcCHHHHHHHHHHhCCce
Q 026902 6 IPPNQTIYIKNLNE-----KIKKEELKRSLYCLFSQYGRIFDVVALKT----PKLRGQAWVVFSEVTAASNAVRQMQNFP 76 (231)
Q Consensus 6 ~~~~~~v~v~nLp~-----~~te~~l~~~l~~~f~~~g~v~~v~~~~~----~~~~g~afV~f~~~e~A~~a~~~l~g~~ 76 (231)
..++++|+|+||.. +-++++|+ ++|++||.|.+|.++++ +.++|+|||+|.+.++|.+|+..|||..
T Consensus 5 ~~~s~~l~l~Nm~~~~~l~dd~~~dl~----~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~ 80 (105)
T 2pe8_A 5 KCPTKVVLLRNMVGAGEVDEDLEVETK----EECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRY 80 (105)
T ss_dssp GSCCSEEEEESSSCSCCC---CHHHHH----HHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCE
T ss_pred CCCCCEEEEEcCCChHHhhHHHHHHHH----HHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCE
Confidence 36799999999973 23567777 99999999999999873 5789999999999999999999999999
Q ss_pred eCCeeeEEEeccC
Q 026902 77 FYDKPMRIQYAKS 89 (231)
Q Consensus 77 ~~g~~l~v~~~~~ 89 (231)
|.||+|.|.++..
T Consensus 81 ~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 81 FGGRVVKACFYNL 93 (105)
T ss_dssp ETTEECEEEECCH
T ss_pred ECCcEEEEEEcCH
Confidence 9999999999863
No 311
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.70 E-value=5.7e-17 Score=112.75 Aligned_cols=64 Identities=16% Similarity=0.356 Sum_probs=58.2
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---C---CCccceEEEEEcCHHHHHHHHHHh
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---T---PKLRGQAWVVFSEVTAASNAVRQM 72 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~---~~~~g~afV~f~~~e~A~~a~~~l 72 (231)
+....+++|||+|||+++++++|+ ++|++||.|. +.++. + |.++|||||+|.+.++|.+|++.|
T Consensus 3 ~~~~~~~~lfVgnLp~~~te~~L~----~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 3 SGSSGSRKVFVGGLPPDIDEDEIT----ASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CSSSCCCCEEEECCCTTCCHHHHH----HHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCCCCCEEEEcCCCCCCCHHHHH----HHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 456778999999999999999999 9999999999 77766 2 688999999999999999999988
No 312
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=99.70 E-value=3.3e-17 Score=113.04 Aligned_cols=78 Identities=21% Similarity=0.299 Sum_probs=67.4
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
......++|||+|||..+++++|+++|++||.|..+.+++++ +|||||+|.+.++|.+|+..+ |..++| +.|+
T Consensus 20 ~~~~~~~~lfV~nLp~~~te~~L~~~F~~~G~i~~v~i~~~~~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g-~~l~ 97 (109)
T 2rs2_A 20 HMGSSGCKMFIGGLSWQTTQEGLREYFGQFGEVKECLVMRDPLTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDS-KTID 97 (109)
T ss_dssp ------CCEEEESCCTTCCHHHHHHHHTTTSCEEEEEECCCTTTCCCTTCEEEEESSHHHHHHHHHSS-CEEETT-EEEE
T ss_pred ccCCCCCEEEEeCCCCCCCHHHHHHHHHccCCeEEEEEEECCCCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCC-EEEE
Confidence 344567789999999999999999999999999999998863 689999999999999999976 599998 9999
Q ss_pred EEecc
Q 026902 226 ITFAK 230 (231)
Q Consensus 226 V~~a~ 230 (231)
|.+|+
T Consensus 98 V~~a~ 102 (109)
T 2rs2_A 98 PKVAF 102 (109)
T ss_dssp EEECC
T ss_pred EEEcc
Confidence 99985
No 313
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=99.70 E-value=1.1e-16 Score=123.26 Aligned_cols=82 Identities=18% Similarity=0.410 Sum_probs=76.3
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
.+.++|||+|||..+++++|+ ++|+.||.|..|++.+ ++.++|||||+|.+.++|.+|+..|||..|.|+.|+
T Consensus 123 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~l~g~~~~g~~i~ 198 (216)
T 2qfj_A 123 RAFNRIYVASVHQDLSDDDIK----SVFEAFGKIKSATLARDPTTGKHKGYGFIEYEKAQSSQDAVSSMNLFDLGGQYLR 198 (216)
T ss_dssp TTSCEEEEECCCTTCCHHHHH----HHHTTSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCBCSSSBCE
T ss_pred CCCcEEEEeCCCCcCCHHHHH----HHHhccCCeeEEEEEecCCCCCcCceEEEEecCHHHHHHHHHHccCCEeCCcEEE
Confidence 456899999999999999999 9999999999999987 578899999999999999999999999999999999
Q ss_pred EEeccCccc
Q 026902 84 IQYAKSKSD 92 (231)
Q Consensus 84 v~~~~~~~~ 92 (231)
|.++.++..
T Consensus 199 V~~a~~~~~ 207 (216)
T 2qfj_A 199 VGKAVTPPM 207 (216)
T ss_dssp EEECSSCSS
T ss_pred EEEecCCCC
Confidence 999987644
No 314
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=1.1e-16 Score=109.30 Aligned_cols=76 Identities=20% Similarity=0.245 Sum_probs=69.0
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
...+.++|||+|||..+++++|+++|++||.|..+.++.++ +|||||+|.+.++|.+|+. ++..+++ +.|.|
T Consensus 11 ~~~~~~~l~v~nlp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g-~~l~v 87 (103)
T 2cqg_A 11 AVQKTSDLIVLGLPWKTTEQDLKEYFSTFGEVLMVQVKKDLKTGHSKGFGFVRFTEYETQVKVMS--QRHMIDG-RWCDC 87 (103)
T ss_dssp CCCCCCCEEEESCCSSCCHHHHHHHHGGGSCEEEEEEEECSSSCSEEEEEEEEESSHHHHHHHHH--SCEEETT-EEEEE
T ss_pred ccCCCCEEEEEcCCCcCCHHHHHHHHHhcCCeEEEEEEecCCCCCccceEEEEECCHHHHHHHHH--cCCeeCC-eEEEE
Confidence 34466789999999999999999999999999999998863 5899999999999999998 5789998 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.|++
T Consensus 88 ~~a~ 91 (103)
T 2cqg_A 88 KLPN 91 (103)
T ss_dssp ECCC
T ss_pred EecC
Confidence 9986
No 315
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.70 E-value=8.5e-17 Score=109.57 Aligned_cols=75 Identities=16% Similarity=0.210 Sum_probs=67.4
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
....++|||+|||+.+|++||+++|++||.+ .|.++.++ +|||||+|.+.++|.+|+. +|+..|++ +.|+|.+
T Consensus 12 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~-~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g-r~i~V~~ 88 (102)
T 1wez_A 12 STTGHCVHMRGLPYRATENDIYNFFSPLNPM-RVHIEIGPDGRVTGEADVEFATHEDAVAAMA-KDKANMQH-RYVELFL 88 (102)
T ss_dssp CSSSCEEEEESCCTTCCHHHHHHSSCSCCCS-EEEEEESSSSCEEEEEEEECSSSHHHHHHHT-TSSCCSSS-SCCEEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHcCce-EEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCCCeECC-cEEEEEE
Confidence 3466789999999999999999999999955 99998764 5799999999999999994 79999999 9999998
Q ss_pred cc
Q 026902 229 AK 230 (231)
Q Consensus 229 a~ 230 (231)
+.
T Consensus 89 ~~ 90 (102)
T 1wez_A 89 NS 90 (102)
T ss_dssp EC
T ss_pred CC
Confidence 75
No 316
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=99.70 E-value=1.1e-16 Score=121.62 Aligned_cols=81 Identities=17% Similarity=0.351 Sum_probs=75.9
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
.+.++|||+|||..+++++|+ ++|+.||.|..+.+.+ ++.++|||||+|.+.++|.+|+..|||..+.|+.|+
T Consensus 112 ~~~~~l~v~nl~~~~~~~~l~----~~f~~~G~v~~~~~~~~~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~ 187 (198)
T 2yh0_A 112 DSAHKLFIGGLPNYLNDDQVK----ELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 187 (198)
T ss_dssp CCCCEEEEECCCTTCCHHHHH----HHHHTBSCEEEEEEEECTTTCSEEEEEEEEESSSSHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEeCCCCCCCHHHHH----HHHHHcCCccEEEEeecCCCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEE
Confidence 567999999999999999999 9999999999999987 577899999999999999999999999999999999
Q ss_pred EEeccCcc
Q 026902 84 IQYAKSKS 91 (231)
Q Consensus 84 v~~~~~~~ 91 (231)
|.++.++.
T Consensus 188 v~~a~~~~ 195 (198)
T 2yh0_A 188 VQRASVGA 195 (198)
T ss_dssp EEESCCCC
T ss_pred EEECCCCC
Confidence 99997654
No 317
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.70 E-value=9.7e-17 Score=109.30 Aligned_cols=77 Identities=25% Similarity=0.482 Sum_probs=67.1
Q ss_pred CCCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 151 ETAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 151 ~~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
....+.++|||+|||..+++++|+++|+.|+ .+.++.++ +|||||+|.+.++|.+|+..|||..|.+ +.|+
T Consensus 10 ~~~~~~~~l~V~nLp~~~t~~~l~~~F~~~~---~~~~~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g-~~l~ 85 (102)
T 2fc8_A 10 ARSQPSKTLFVKGLSEDTTEETLKESFDGSV---RARIVTDRETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDG-NKVT 85 (102)
T ss_dssp SSSCCCSSEEEECCCTTCCHHHHHHTSTTCS---EEEEEECSSSCSEEEEEEEECSSHHHHHHHHHHHTTCEETT-EECE
T ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHhcCCe---EEEEEecCCCCCcCcEEEEEECCHHHHHHHHHHhCCCeECC-eEEE
Confidence 3455778899999999999999999999875 45555542 5899999999999999999999999999 9999
Q ss_pred EEeccC
Q 026902 226 ITFAKK 231 (231)
Q Consensus 226 V~~a~~ 231 (231)
|.||+.
T Consensus 86 V~~a~~ 91 (102)
T 2fc8_A 86 LDWAKP 91 (102)
T ss_dssp EEECCC
T ss_pred EEEecC
Confidence 999973
No 318
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.70 E-value=2.9e-17 Score=114.96 Aligned_cols=76 Identities=14% Similarity=0.235 Sum_probs=69.9
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCC---eeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPG---FKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~---v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
....++|||+|||..+|+++|+++|++||. |..|.++.++ +|||||+|.+.++|.+|+. |||..|++ +.|+
T Consensus 14 ~~~~~~l~V~nLp~~~te~~l~~~F~~~G~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~g-r~i~ 91 (118)
T 2db1_A 14 GGEGYVVKLRGLPWSCSIEDVQNFLSDCTIHDGVAGVHFIYTREGRQSGEAFVELESEDDVKLALK-KDRESMGH-RYIE 91 (118)
T ss_dssp BCCCCEEEEESCCTTCCHHHHHHHTTTSCBTTGGGGEEEEECSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETT-EEEE
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHcCCccCceeEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECC-eEEE
Confidence 446788999999999999999999999999 8999998763 5899999999999999999 99999999 9999
Q ss_pred EEecc
Q 026902 226 ITFAK 230 (231)
Q Consensus 226 V~~a~ 230 (231)
|.+|+
T Consensus 92 V~~a~ 96 (118)
T 2db1_A 92 VFKSH 96 (118)
T ss_dssp EEEEC
T ss_pred EEECC
Confidence 99885
No 319
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=99.69 E-value=1.1e-16 Score=119.02 Aligned_cols=77 Identities=19% Similarity=0.400 Sum_probs=72.6
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
...++|||+|||..+++++|+ ++|++||.|..+.+.+ ++.++|||||+|.+.++|.+|+..|||..+.|++|.
T Consensus 92 ~~~~~l~v~nlp~~~t~~~l~----~~f~~~G~v~~v~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~ 167 (172)
T 2g4b_A 92 PGAHKLFIGGLPNYLNDDQVK----ELLTSFGPLKAFNLVKDSATGLSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLL 167 (172)
T ss_dssp TTTTCEEEECCCTTCCHHHHH----HHHHTTSCEEEEEEEECTTTCSEEEEEEEEESSTTHHHHHHHHHTTCEETTEECE
T ss_pred CCCCEEEEEcCCCcCCHHHHH----HHHHhcCCceEEEEEecCCCCCcceEEEEEeCCHHHHHHHHHHcCCCEECCeEEE
Confidence 447999999999999999999 9999999999999887 578899999999999999999999999999999999
Q ss_pred EEec
Q 026902 84 IQYA 87 (231)
Q Consensus 84 v~~~ 87 (231)
|.+|
T Consensus 168 V~~A 171 (172)
T 2g4b_A 168 VQRA 171 (172)
T ss_dssp EEEC
T ss_pred EEeC
Confidence 9986
No 320
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=3.6e-17 Score=113.79 Aligned_cols=77 Identities=14% Similarity=0.194 Sum_probs=70.0
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCe-eEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGF-KEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAI 226 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v-~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V 226 (231)
.....++|||+|||..+++++|+++|++||.| ..|.++.+ .+|||||+|.+.++|.+|+.. ||..|++ +.|.|
T Consensus 11 ~~~~~~~l~V~nLp~~~t~~~l~~~F~~~g~v~~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~g-r~i~v 88 (114)
T 2cpy_A 11 VNSAKVCAHITNIPFSITKMDVLQFLEGIPVDENAVHVLVDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNG-REAFV 88 (114)
T ss_dssp CCSCCCEEEEESCCTTSCHHHHHHHTTTSCCCSTTEEECCCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETT-EEEEE
T ss_pred CCCCccEEEEeCcCCcCCHHHHHHHHHhCCCcCCeEEEEECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCC-eEEEE
Confidence 34467889999999999999999999999999 88999875 368999999999999999987 9999999 99999
Q ss_pred Eecc
Q 026902 227 TFAK 230 (231)
Q Consensus 227 ~~a~ 230 (231)
.+|+
T Consensus 89 ~~a~ 92 (114)
T 2cpy_A 89 HVVT 92 (114)
T ss_dssp EEEC
T ss_pred EECC
Confidence 9985
No 321
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.69 E-value=4.6e-17 Score=113.59 Aligned_cols=75 Identities=24% Similarity=0.312 Sum_probs=69.8
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEe
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITF 228 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~ 228 (231)
...++|||+|||..+++++|+++|++||.|..+.++.++ +|||||+|.+.++|.+|+.. ||..|++ +.|+|.+
T Consensus 25 ~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g-~~l~V~~ 102 (116)
T 1x4b_A 25 EQFRKLFIGGLSFETTEESLRNYYEQWGKLTDCVVMRDPASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDG-RVVEPKR 102 (116)
T ss_dssp HHHTEEEEECCTTCCCHHHHHHHHTSSCCCSEEEEECCTTTSSCCSEEEEECSSHHHHHHHHTS-CSEEETT-EEEEEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEECCCCCCcCceEEEEeCCHHHHHHHHHh-CCcEECC-EEEEEEE
Confidence 345789999999999999999999999999999999863 68999999999999999998 9999999 9999999
Q ss_pred cc
Q 026902 229 AK 230 (231)
Q Consensus 229 a~ 230 (231)
|+
T Consensus 103 a~ 104 (116)
T 1x4b_A 103 AV 104 (116)
T ss_dssp CS
T ss_pred CC
Confidence 86
No 322
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=99.69 E-value=1.1e-16 Score=119.53 Aligned_cols=78 Identities=24% Similarity=0.317 Sum_probs=72.7
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
.+.++|||+|||..+++++|+ ++|+.||.|..+ ..++.++|||||+|.+.++|.+|+..|||..+.|++|+|.|
T Consensus 97 ~~~~~l~v~nlp~~~t~~~l~----~~F~~~g~v~~~--~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~i~v~~ 170 (175)
T 1fje_B 97 RAARTLLAKNLSFNITEDELK----EVFEDALEIRLV--SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYY 170 (175)
T ss_dssp GGGGEEEEESCCSSCCHHHHH----HHCTTCSEEEEE--CSSSSCCSEEEEECSSHHHHHHHHHHHTEEEETTEEEEEEE
T ss_pred ccCCEEEEeCCCCCCCHHHHH----HHHHhcCeEEEe--cCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEe
Confidence 467899999999999999999 999999999877 55789999999999999999999999999999999999999
Q ss_pred ccCc
Q 026902 87 AKSK 90 (231)
Q Consensus 87 ~~~~ 90 (231)
+.++
T Consensus 171 a~~k 174 (175)
T 1fje_B 171 TGEK 174 (175)
T ss_dssp CSSC
T ss_pred cCCC
Confidence 9765
No 323
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=99.68 E-value=5.2e-17 Score=116.05 Aligned_cols=76 Identities=14% Similarity=0.208 Sum_probs=69.8
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCC---eeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPG---FKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~---v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
.....+|||+|||+++|+++|+++|++||. |..|.+++++ +|||||+|.+.++|.+|+. |||..+++ +.|+
T Consensus 41 ~~~~~~lfVgnLp~~~te~dL~~~F~~~G~v~~v~~v~i~~d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~g-r~i~ 118 (136)
T 2hgl_A 41 GGEGFVVKLRGLPWSCSVEDVQNFLSDCTIHDGAAGVHFIYTREGRQSGEAFVELGSEDDVKMALK-KDRESMGH-RYIE 118 (136)
T ss_dssp CCTTCEEEEESCCTTCCHHHHHHHTTTCCCSSSSTTEEEEECSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSS-SEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcCceeEEEEEECCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECC-EEEE
Confidence 345678999999999999999999999999 8899998763 5899999999999999999 99999999 9999
Q ss_pred EEecc
Q 026902 226 ITFAK 230 (231)
Q Consensus 226 V~~a~ 230 (231)
|.+|.
T Consensus 119 V~~a~ 123 (136)
T 2hgl_A 119 VFKSH 123 (136)
T ss_dssp EEECC
T ss_pred EEECC
Confidence 99885
No 324
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2.2e-17 Score=111.31 Aligned_cols=77 Identities=19% Similarity=0.379 Sum_probs=68.2
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
...+.++|||+|||..+++++|+++|++||.|..+ ...+ .+|+|||+|.+.++|.+|+..|||..++| ++|+|.||+
T Consensus 12 ~~~~~~~l~V~nL~~~~t~~~l~~~F~~~g~v~~~-~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g-~~l~v~~a~ 89 (96)
T 1fjc_A 12 KVRAARTLLAKNLSFNITEDELKEVFEDALEIRLV-SQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDG-RSVSLYYTG 89 (96)
T ss_dssp TTTGGGEEEEESCCSSCCHHHHHHHHCSEEEECCE-EETTEEEEEEEEEESSHHHHHHHHHHTTEEEETT-EEEEEEECS
T ss_pred cCCCCCEEEEeCCCCCCCHHHHHHHHhhCCcEEEe-CCCCCcceEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEEcC
Confidence 34467889999999999999999999999998877 2222 36899999999999999999999999999 999999985
No 325
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=99.68 E-value=2.3e-17 Score=112.20 Aligned_cols=75 Identities=20% Similarity=0.304 Sum_probs=66.4
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEee-----CCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIE-----AKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~-----~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
..+.++|||+|||..+++++|+++|++||.|.. .++. ..+|||||+|.+.++|.+|+. |||..|.+ +.|+|.
T Consensus 14 ~~~~~~l~V~nLp~~~t~~~l~~~F~~~G~v~~-~~~~~~~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g-~~l~V~ 90 (101)
T 1fj7_A 14 STTPFNLFIGNLNPNKSVAELKVAISELFAKND-LAVVDVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFG-NEIKLE 90 (101)
T ss_dssp CSCSEEEEEECCCTTSCHHHHHHHHHHHHHHHT-CCCCEEEEETTTTEEEEEESSHHHHHHHHH-GGGCCBTT-BCCEEE
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcce-EEEecCCCCCcCcEEEEEECCHHHHHHHHh-cCCcEECC-cEEEEE
Confidence 345678999999999999999999999998876 3333 247999999999999999998 99999998 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
+|+
T Consensus 91 ~a~ 93 (101)
T 1fj7_A 91 KPK 93 (101)
T ss_dssp CCS
T ss_pred EcC
Confidence 986
No 326
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.68 E-value=8e-17 Score=125.15 Aligned_cols=81 Identities=19% Similarity=0.304 Sum_probs=71.0
Q ss_pred CCCCCCEEEEeCCCCcc---------CHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCc
Q 026902 5 DIPPNQTIYIKNLNEKI---------KKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNF 75 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~---------te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~ 75 (231)
....+++|||+|||..+ ++++|+ ++|++||.|.+|+++ .++|||||+|.+.++|..|+.+|+|.
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~----~~F~~fG~I~~v~v~---~~kG~AFV~F~~~~~Ae~A~~am~g~ 202 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIR----FVFSRLGDIDRIRYV---ESKNCGFVKFKYQANAEFAKEAMSNQ 202 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHH----HHHHTTSCEEEEEEE---GGGTEEEEEESSHHHHHHHHHHHTTC
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHH----HHHHccCCEEEEEEE---CCCCEEEEEeCCHHHHHHHHHHhCCC
Confidence 35678999999999998 689988 999999999999995 46999999999999999999999999
Q ss_pred ee------------CCeeeEEEeccCccc
Q 026902 76 PF------------YDKPMRIQYAKSKSD 92 (231)
Q Consensus 76 ~~------------~g~~l~v~~~~~~~~ 92 (231)
.+ .|+.|.|.|+..+..
T Consensus 203 ~l~~~~~~e~~~~~~gr~L~V~wA~~~pn 231 (240)
T 3u1l_A 203 TLLLPSDKEWDDRREGTGLLVKWANEDPD 231 (240)
T ss_dssp CCCCTTSTTGGGGGGSCCCEEEECC----
T ss_pred EEeccccccccccCCCCEEEEEEccCCCC
Confidence 99 899999999976544
No 327
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=99.68 E-value=1.4e-16 Score=135.00 Aligned_cols=82 Identities=15% Similarity=0.278 Sum_probs=75.9
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
.+.++|||+|||+.+|+++|+ ++|+.||.|..|.|+. ++.++|||||+|.+.++|.+||..|||..|.|+.|.
T Consensus 100 ~~~~~lfV~nL~~~~te~~L~----~~F~~~G~I~~v~i~~d~~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~ 175 (437)
T 3pgw_S 100 DAFKTLFVARVNYDTTESKLR----REFEVYGPIKRIHMVYSKRSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVL 175 (437)
T ss_pred CCCCEEEEeCCCCCCCHHHHH----HHHHHcCCeeEEEeeccCCCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEE
Confidence 456899999999999999999 9999999999999986 688999999999999999999999999999999999
Q ss_pred EEeccCccc
Q 026902 84 IQYAKSKSD 92 (231)
Q Consensus 84 v~~~~~~~~ 92 (231)
|.++..+..
T Consensus 176 V~~a~~~~~ 184 (437)
T 3pgw_S 176 VDVERGRTV 184 (437)
T ss_pred EEEeCCCCC
Confidence 999976543
No 328
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=99.68 E-value=2e-16 Score=117.81 Aligned_cols=78 Identities=23% Similarity=0.488 Sum_probs=71.7
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeC---Cee
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFY---DKP 81 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~---g~~ 81 (231)
.+.++|||+|||..+|+++|+ ++|+.||.|..+.+.+ ++.++|||||+|.+.++|.+|+..|||..+. +++
T Consensus 93 ~~~~~l~v~nl~~~~t~~~l~----~~F~~~G~i~~v~~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~~~ 168 (175)
T 3nmr_A 93 VEDRKLFIGMISKKCTENDIR----VMFSSFGQIEECRILRGPDGLSRGCAFVTFTTRAMAQTAIKAMHQAQTMEGCSSP 168 (175)
T ss_dssp GGGSEEEEESCCTTCCHHHHH----HHHGGGSCEEEEEEEECTTSCEEEEEEEEESSHHHHHHHHHHHTTSCCCTTCSSC
T ss_pred CCCCeEEEcCCCCcCCHHHHH----HHHHhCCCEEEEEEEECCCCCEEEEEEEEECCHHHHHHHHHHhcCCcccCCCCCC
Confidence 467899999999999999999 9999999999999987 5788999999999999999999999998776 499
Q ss_pred eEEEecc
Q 026902 82 MRIQYAK 88 (231)
Q Consensus 82 l~v~~~~ 88 (231)
|.|.|+.
T Consensus 169 l~V~~ad 175 (175)
T 3nmr_A 169 MVVKFAD 175 (175)
T ss_dssp CEEEECC
T ss_pred eEEEecC
Confidence 9999873
No 329
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=99.68 E-value=5.4e-17 Score=111.58 Aligned_cols=77 Identities=13% Similarity=0.142 Sum_probs=70.1
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCC---eeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCe
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPG---FKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPM 224 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~---v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l 224 (231)
......+|||+|||.++|+++|+++|+.||. |..|.++.+ .+|+|||+|.+.++|.+|+. +||..+++ +.|
T Consensus 7 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~g~~~~v~~v~i~~~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~g-r~i 84 (107)
T 2lmi_A 7 EVDDVFLIRAQGLPWSCTMEDVLNFFSDCRIRNGENGIHFLLNRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQ-RYV 84 (107)
T ss_dssp CCSSCCEEEEECCCSSCCSHHHHHHTTTSCBTTTTTTEECCCCTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSS-SCC
T ss_pred CCCCccEEEEeCCCCCCCHHHHHHHHHhcCCcCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCC-eEE
Confidence 3446788999999999999999999999988 899999875 36899999999999999999 99999998 999
Q ss_pred EEEecc
Q 026902 225 AITFAK 230 (231)
Q Consensus 225 ~V~~a~ 230 (231)
+|.+|+
T Consensus 85 ~V~~a~ 90 (107)
T 2lmi_A 85 EVYEIN 90 (107)
T ss_dssp CCEECC
T ss_pred EEEECC
Confidence 999875
No 330
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=99.68 E-value=1.4e-16 Score=124.27 Aligned_cols=81 Identities=31% Similarity=0.469 Sum_probs=75.6
Q ss_pred CCCCCCCCCEEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 149 TQETAAPNNILFIQNLPH-ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 149 ~~~~~~~~~~l~v~nlp~-~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
+....+++++|||+|||. .+++++|+++|++||.|.++.+.++++|||||+|.+.++|.+|+..|||..+.+ ++|.|.
T Consensus 27 p~~~~~~~~~l~V~nLp~~~~te~~L~~~F~~~G~i~~v~i~~~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g-~~l~v~ 105 (229)
T 2adc_A 27 PGLAGAGNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG-KPIRIT 105 (229)
T ss_dssp GGGGCCCCSEEEEESCCTTTCCHHHHHHHHHHHTCEEEEEECCTTSCCEEEEESCHHHHHHHHHHHTTCBCSS-SBCEEE
T ss_pred CCCCCCCCCEEEEeCCCcccCCHHHHHHHHHhCCCeEEEEEEECCCCEEEEEECCHHHHHHHHHHhCCCeECC-eEEEEE
Confidence 334456788999999999 999999999999999999999999988999999999999999999999999999 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
+++
T Consensus 106 ~a~ 108 (229)
T 2adc_A 106 LSK 108 (229)
T ss_dssp CCS
T ss_pred Eec
Confidence 986
No 331
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=99.68 E-value=6.4e-17 Score=117.04 Aligned_cols=77 Identities=23% Similarity=0.572 Sum_probs=68.4
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeE--------EEEee--CCCcEEEEEecCHHHHHHHHHHhcCCccCCCC
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKE--------VRMIE--AKPGIAFVEFEDDVQSSMAMQALQGFKITPQN 222 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~--------v~~~~--~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~ 222 (231)
..++++|||+|||..+|+++|+.+|++||.|.. +.+.. ..+|||||+|.+.++|.+|+..|||..|+| +
T Consensus 42 ~~~~~~l~V~nLp~~~te~~L~~~F~~~G~i~~~~~~~~~di~~~~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g-~ 120 (143)
T 3egn_A 42 GEPNCRIYVKNLAKHVQEKDLKYIFGRYVDFSSETQRIMFDIRLMKEGRMKGQAFIGLPNEKAAAKALKEANGYVLFG-K 120 (143)
T ss_dssp CSCCSEEEEEEECTTCCHHHHHHHHGGGCCTTCHHHHHHCEEEEEEETTTEEEEEEECSSHHHHHHHHHHHTTBEETT-E
T ss_pred CCCCCEEEEeCCCCCCCHHHHHHHHHHhCCcccccccceeeEEeccCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCC-c
Confidence 446788999999999999999999999999876 33333 246999999999999999999999999998 9
Q ss_pred CeEEEecc
Q 026902 223 PMAITFAK 230 (231)
Q Consensus 223 ~l~V~~a~ 230 (231)
+|+|.||+
T Consensus 121 ~l~V~~a~ 128 (143)
T 3egn_A 121 PMVVQFAR 128 (143)
T ss_dssp ECEEEECC
T ss_pred EEEEEECC
Confidence 99999996
No 332
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=99.68 E-value=3.5e-16 Score=115.76 Aligned_cols=78 Identities=26% Similarity=0.488 Sum_probs=72.6
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCC--e
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD--K 80 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g--~ 80 (231)
..+.++|||+|||..+++++|+ ++|+.||.|..+.+.+ ++.++|||||+|.+.++|.+|+..|||..+.| +
T Consensus 86 ~~~~~~l~v~nl~~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~ 161 (168)
T 1b7f_A 86 SIKDTNLYVTNLPRTITDDQLD----TIFGKYGSIVQKNILRDKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQ 161 (168)
T ss_dssp TTTTCEEEEESCCTTCCHHHHH----HHHTSSSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSS
T ss_pred cCCCCCEEEeCCCCCCCHHHHH----HhhhcCCcEEEEEEEEcCCCCCcceEEEEEECCHHHHHHHHHHhcCCEecCCCe
Confidence 4568999999999999999999 9999999999999887 57789999999999999999999999999987 9
Q ss_pred eeEEEec
Q 026902 81 PMRIQYA 87 (231)
Q Consensus 81 ~l~v~~~ 87 (231)
+|+|.||
T Consensus 162 ~l~V~~A 168 (168)
T 1b7f_A 162 PLSVRLA 168 (168)
T ss_dssp CCEEEEC
T ss_pred EEEEEeC
Confidence 9999885
No 333
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=99.68 E-value=9e-17 Score=125.10 Aligned_cols=75 Identities=21% Similarity=0.240 Sum_probs=69.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCC--CeeEEEEeeCC-----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYP--GFKEVRMIEAK-----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g--~v~~v~~~~~~-----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
..++|||+|||..+|+++|+++|++|| .|.+|.|++++ +|||||+|.+.++|.+||..|||..|.+ +.|+|.
T Consensus 67 ~~~~lfVgnL~~~~te~~L~~~F~~~G~~~v~~v~i~~d~~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~G-r~l~V~ 145 (229)
T 3q2s_C 67 KRIALYIGNLTWWTTDEDLTEAVHSLGVNDILEIKFFENRANGQSKGFALVGVGSEASSKKLMDLLPKRELHG-QNPVVT 145 (229)
T ss_dssp --CEEEEESCCTTCCHHHHHHHHHTTTCCCEEEEEEEECTTTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTT-BCCEEE
T ss_pred CccEEEEeCCCCCCCHHHHHHHHHHHCCcceEEEEEEecCCCCccceEEEEEECCHHHHHHHHHHcCCCeECC-EEeEEE
Confidence 567899999999999999999999999 99999999873 6899999999999999999999999999 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
+|+
T Consensus 146 ~a~ 148 (229)
T 3q2s_C 146 PVN 148 (229)
T ss_dssp ECC
T ss_pred ECC
Confidence 986
No 334
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=99.68 E-value=2.1e-16 Score=110.94 Aligned_cols=74 Identities=20% Similarity=0.361 Sum_probs=68.2
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEeccC
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAKK 231 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~~ 231 (231)
.++++|||+|+ .+++++|+++|++||.|..|.+.. .+|||||+|.+.++|.+|+..|||..+.+ ++|+|.||+.
T Consensus 37 ~~~~~lfVgnl--~~te~~L~~~F~~~G~I~~v~i~~-~kg~aFV~f~~~~~A~~Ai~~lng~~~~g-~~l~V~~a~~ 110 (121)
T 2bz2_A 37 RKGNTLYVYGE--DMTPTLLRGAFSPFGNIIDLSMDP-PRNCAFVTYEKMESADQAVAELNGTQVES-VQLKVNIARK 110 (121)
T ss_dssp CCCCEEEEECS--SCCHHHHHHHHSTTCCCSCEEEET-TTTEEEEECSSHHHHHHHHHHHTTCBCSS-CBCEEEECCS
T ss_pred CCCCEEEEcCC--CCCHHHHHHHHHccCCEEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCEECC-eEEEEEEeCC
Confidence 46788999996 699999999999999999999974 55999999999999999999999999998 9999999973
No 335
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=99.68 E-value=7.3e-17 Score=119.40 Aligned_cols=78 Identities=22% Similarity=0.449 Sum_probs=73.1
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEE
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRI 84 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v 84 (231)
+.++|||+|||..+++++|+ ++|+.||.|..+.+.. ++.++|||||+|.+.++|.+|++ ++|..+.|++|.|
T Consensus 86 ~~~~l~V~nlp~~~t~~~l~----~~F~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~V 160 (167)
T 2cjk_A 86 KTGKIFVGGIGPDVRPKEFE----EFFSQWGTIIDAQLMLDKDTGQSRGFGFVTYDSADAVDRVCQ-NKFIDFKDRKIEI 160 (167)
T ss_dssp HCEEEEEEEECTTCCHHHHH----HHHHTTSCCSEEECCCSSSSSTTSEEEEEEESSHHHHHHHHH-CSEECSSSSCEEE
T ss_pred CCCeEEECCCCCCCCHHHHH----HHHHhCccEEEEEEEEcCCCCccceEEEEEECCHHHHHHHHh-CCCEEeCCeEEEE
Confidence 46799999999999999999 9999999999999987 58899999999999999999999 8999999999999
Q ss_pred EeccCc
Q 026902 85 QYAKSK 90 (231)
Q Consensus 85 ~~~~~~ 90 (231)
.++.++
T Consensus 161 ~~a~pk 166 (167)
T 2cjk_A 161 KRAEPR 166 (167)
T ss_dssp EECCCC
T ss_pred eecCCC
Confidence 999765
No 336
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=99.68 E-value=3.3e-17 Score=105.23 Aligned_cols=70 Identities=14% Similarity=0.314 Sum_probs=65.1
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 158 ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 158 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
+|||+|||..+++++|+++|++||.|..+.++++ .+|+|||+|.+.++|.+|+. ++|..++| +.|.|.+|
T Consensus 1 ~l~v~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~~~~~~g~afV~f~~~~~a~~Ai~-~~~~~~~g-~~l~v~~a 75 (75)
T 1iqt_A 1 KIFVGGLSPDTPEEKIREYFGGFGEVESIELPMDNKTNKRRGFCFITFKEEEPVKKIME-KKYHNVGL-SKCEIKVA 75 (75)
T ss_dssp CEEESCCCSSCCHHHHHHHHHHHSCCSEECCCCSCCCSSSCCCEEEECSSSHHHHHHHT-TSSCCBTT-BCCCEEEC
T ss_pred CEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCCcCCEEEEEECCHHHHHHHHH-hCCCeECC-EEEEEEEC
Confidence 4899999999999999999999999999999875 26899999999999999998 48999999 99999986
No 337
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=99.67 E-value=2.6e-16 Score=119.40 Aligned_cols=82 Identities=23% Similarity=0.371 Sum_probs=71.9
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
.+.++|||+|||..+|+++|+ ++|+.||.|..|.++. ++.++|||||+|.+.++|.+|+.. +|..+.|+.|.
T Consensus 102 ~~~~~l~V~nLp~~~t~~~l~----~~F~~~G~i~~v~i~~~~~~g~~~g~afV~F~~~~~A~~A~~~-~~~~~~G~~i~ 176 (196)
T 1l3k_A 102 LTVKKIFVGGIKEDTEEHHLR----DYFEQYGKIEVIEIMTDRGSGKKRGFAFVTFDDHDSVDKIVIQ-KYHTVNGHNCE 176 (196)
T ss_dssp -CCSEEEEECCTTTCCHHHHH----HHHTTTSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHC-SCCEETTEECE
T ss_pred CCcceEEEeCCCCCCCHHHHH----HHHhcCCCeEEEEEeecCCCCCccceEEEEECCHHHHHHHHHh-CCcEECCEEEE
Confidence 356899999999999999999 9999999999999987 578999999999999999999995 89999999999
Q ss_pred EEeccCccch
Q 026902 84 IQYAKSKSDC 93 (231)
Q Consensus 84 v~~~~~~~~~ 93 (231)
|.++.++...
T Consensus 177 v~~a~~k~~~ 186 (196)
T 1l3k_A 177 VRKALSKQEM 186 (196)
T ss_dssp EEECC-----
T ss_pred EEecCChhHh
Confidence 9999876654
No 338
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.67 E-value=1.6e-16 Score=106.55 Aligned_cols=74 Identities=16% Similarity=0.187 Sum_probs=64.8
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
..++|||+|||..+++++|+++|++||.|..|.+.+....||||+|.+.++|.+|+. |||..|++ +.|.|.+|.
T Consensus 7 ~~~~l~V~nl~~~~t~~~l~~~F~~~G~v~~v~~~~~~g~~afV~f~~~~~a~~ai~-l~g~~~~g-~~l~V~~a~ 80 (94)
T 2e5g_A 7 GLRSVFVSGFPRGVDSAQLSEYFLAFGPVASVVMDKDKGVFAIVEMGDVGAREAVLS-QSQHSLGG-HRLRVRPRE 80 (94)
T ss_dssp TCCEEEEECCCTTCCHHHHHHHGGGTSCEEEEEECSSSCCEEEEEESSHHHHHHHHT-CSCCEETT-EECCCBCSC
T ss_pred CCCEEEEECCCCCCCHHHHHHHHHhcCCeEEEEEcCCCCcEEEEEECCHHHHHHHHh-cCCeEECC-EEEEEEECC
Confidence 457899999999999999999999999999983222211199999999999999999 99999999 999999885
No 339
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=99.67 E-value=8.7e-17 Score=106.24 Aligned_cols=71 Identities=21% Similarity=0.344 Sum_probs=66.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccC----C-------CeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCC
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQY----P-------GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNP 223 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~----g-------~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~ 223 (231)
+.++|||+|||..+++++|+++|++| | .|.++.+.++ +|||||+|.+.++|.+|+ .|||..+.+ ++
T Consensus 5 ~~~~l~V~nLp~~~t~~~l~~~F~~~~~~~g~~~~~~~~v~~~~~~~~-kg~afV~f~~~~~a~~A~-~l~g~~~~g-~~ 81 (87)
T 2hzc_A 5 SARRLYVGNIPFGITEEAMMDFFNAQMRLGGLTQAPGNPVLAVQINQD-KNFAFLEFRSVDETTQAM-AFDGIIFQG-QS 81 (87)
T ss_dssp GGGEEEEESCCTTCCHHHHHHHHHHHHHHTTCCSSSSCSEEEEEECSS-SSEEEEEESSHHHHHHHG-GGTTCEETT-EE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHhhhcccccCCCCcceEEEecCC-CcEEEEEcCCHHHHHHHH-hcCCCEECC-eE
Confidence 56789999999999999999999999 8 8999999876 599999999999999999 999999999 99
Q ss_pred eEEEe
Q 026902 224 MAITF 228 (231)
Q Consensus 224 l~V~~ 228 (231)
|+|+.
T Consensus 82 l~V~r 86 (87)
T 2hzc_A 82 LKIRR 86 (87)
T ss_dssp CEEEC
T ss_pred EEEeC
Confidence 99975
No 340
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.67 E-value=1e-16 Score=110.23 Aligned_cols=73 Identities=11% Similarity=0.208 Sum_probs=67.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
...+|||+|||.+++++||+++|++| .|..|.++.+ ++|+|||+|.+.++|.+|+ .+||..|++ +.|.|..++
T Consensus 15 ~~~~v~V~nLp~~~te~dl~~~F~~~-~v~~v~i~~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~g-r~i~V~~a~ 91 (109)
T 2dnn_A 15 DDLYVSVHGMPFSAMENDVRDFFHGL-RVDAVHLLKDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQ-RYVEVSPAT 91 (109)
T ss_dssp HHHEEEEECCCSSCCHHHHHHHTTTS-CCCEEEECCCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETT-EEEEEEECC
T ss_pred CCCEEEEeCCCCCCCHHHHHHHhccC-CeeEEEEEECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECC-eEEEEEECC
Confidence 34689999999999999999999999 8999999875 3799999999999999999 699999999 999998875
No 341
>2f3j_A RNA and export factor binding protein 2; RRM domain, RBD domain., transport protein; NMR {Mus musculus}
Probab=99.67 E-value=2.3e-16 Score=117.99 Aligned_cols=78 Identities=22% Similarity=0.340 Sum_probs=72.2
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
...++++|||+|||..+++++|.++|++||.|..|.+..+ .+|+|||+|.+.++|.+|+..|||..|++ ++|+|.
T Consensus 84 ~~~~~~~l~V~nLp~~~te~~L~~~F~~~G~I~~v~i~~d~~g~~kG~afV~F~~~~~A~~Ai~~lng~~l~G-r~l~V~ 162 (177)
T 2f3j_A 84 GVETGAKLLVSNLDFGVSDADIQELFAEFGTLKKAAVDYDRSGRSLGTADVHFERRADALKAMKQYKGVPLDG-RPMDIQ 162 (177)
T ss_dssp SCTTCEEEEEECCCSCCCHHHHHHHHHHTSCCSEEEECCCTTSSCSCCEEEEESCHHHHHHHHHHSTTCBCSS-SBCEEE
T ss_pred CCCCCCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEEECCCCCEeeEEEEEeCCHHHHHHHHHHhCCCEECC-EEEEEE
Confidence 3456789999999999999999999999999999999875 36899999999999999999999999999 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
||.
T Consensus 163 ~a~ 165 (177)
T 2f3j_A 163 LVA 165 (177)
T ss_dssp EES
T ss_pred Eec
Confidence 985
No 342
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=99.67 E-value=3.5e-16 Score=106.88 Aligned_cols=76 Identities=17% Similarity=0.230 Sum_probs=67.9
Q ss_pred CCCCEEEecCCCC-----CCCHHHHHHHhccCCCeeEEEEeeC------CCcEEEEEecCHHHHHHHHHHhcCCccCCCC
Q 026902 154 APNNILFIQNLPH-----ETTSSMLEMLFQQYPGFKEVRMIEA------KPGIAFVEFEDDVQSSMAMQALQGFKITPQN 222 (231)
Q Consensus 154 ~~~~~l~v~nlp~-----~~t~~~l~~~f~~~g~v~~v~~~~~------~~g~afV~f~~~~~A~~A~~~lng~~i~~~~ 222 (231)
.++++|+|+||.. .-++++|+++|++||.|.++.++++ ++|+|||+|.++++|.+|+..|||..++| +
T Consensus 6 ~~s~~l~l~Nm~~~~~l~dd~~~dl~~~f~~~G~V~~v~i~~~~~~~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~G-r 84 (105)
T 2pe8_A 6 CPTKVVLLRNMVGAGEVDEDLEVETKEECEKYGKVGKCVIFEIPGAPDDEAVRIFLEFERVESAIKAVVDLNGRYFGG-R 84 (105)
T ss_dssp SCCSEEEEESSSCSCCC---CHHHHHHHGGGGSCEEEEEEEECSSCCTTTSEEEEEEESSHHHHHHHHHHHTTCEETT-E
T ss_pred CCCCEEEEEcCCChHHhhHHHHHHHHHHHHhcCCEEEEEEecCCCCCCCCcEEEEEEECCHHHHHHHHHHHCCCEECC-c
Confidence 4778999999973 2378999999999999999999874 26999999999999999999999999999 9
Q ss_pred CeEEEecc
Q 026902 223 PMAITFAK 230 (231)
Q Consensus 223 ~l~V~~a~ 230 (231)
+|.|.|++
T Consensus 85 ~i~v~~a~ 92 (105)
T 2pe8_A 85 VVKACFYN 92 (105)
T ss_dssp ECEEEECC
T ss_pred EEEEEEcC
Confidence 99999985
No 343
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.67 E-value=1.2e-16 Score=110.84 Aligned_cols=75 Identities=17% Similarity=0.213 Sum_probs=67.3
Q ss_pred CEEEEeCC----CCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcC----HHH----HHHHHH--Hh
Q 026902 10 QTIYIKNL----NEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSE----VTA----ASNAVR--QM 72 (231)
Q Consensus 10 ~~v~v~nL----p~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~----~e~----A~~a~~--~l 72 (231)
+.|||+|| |+.+++.+|+ ++|+.||+|.++.++. ||.++|||||+|.+ +++ |.+|+. .+
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk----~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~l 78 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIK----NYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHES 78 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHH----HHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTT
T ss_pred cEEEEeCCCCCCCCCCCHHHHH----HHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhh
Confidence 78999999 9999999999 9999999999999998 68999999999996 433 888988 78
Q ss_pred CCceeCCeeeEEEecc
Q 026902 73 QNFPFYDKPMRIQYAK 88 (231)
Q Consensus 73 ~g~~~~g~~l~v~~~~ 88 (231)
+|..+.|++|+|.+-.
T Consensus 79 ng~~I~Gr~irV~ln~ 94 (136)
T 2j8a_A 79 SGCFIMGFKFEVILNK 94 (136)
T ss_dssp TCEEETTEEEEEEECC
T ss_pred cCCeecCcEEEEEECc
Confidence 9999999999998743
No 344
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.66 E-value=3.8e-16 Score=118.47 Aligned_cols=77 Identities=17% Similarity=0.401 Sum_probs=70.3
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEEe
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQY 86 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~~ 86 (231)
.++|||+|||.++|+++|+ ++|+.||.|..|++++ ++.++|||||+|.+.++|.+|+..+ +..+.|++|.|.+
T Consensus 109 ~~~l~V~nLp~~~t~~~L~----~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~Gr~l~V~~ 183 (193)
T 2voo_A 109 NRSVYIKGFPTDATLDDIK----EWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKETDLLILF 183 (193)
T ss_dssp HTEEEEECCCTTCCHHHHH----HHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETTEECEEEE
T ss_pred cCEEEecCCCCcCCHHHHH----HHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECCEEEEEEE
Confidence 5899999999999999999 9999999999999987 5889999999999999999999855 5599999999998
Q ss_pred ccCc
Q 026902 87 AKSK 90 (231)
Q Consensus 87 ~~~~ 90 (231)
+...
T Consensus 184 ~~~y 187 (193)
T 2voo_A 184 KDDY 187 (193)
T ss_dssp TTTC
T ss_pred hHHH
Confidence 7543
No 345
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=5.2e-18 Score=118.44 Aligned_cols=77 Identities=26% Similarity=0.423 Sum_probs=70.6
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeE--------EEEeeC-----CCcEEEEEecCHHHHHHHHHHhcCCccCC
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKE--------VRMIEA-----KPGIAFVEFEDDVQSSMAMQALQGFKITP 220 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~--------v~~~~~-----~~g~afV~f~~~~~A~~A~~~lng~~i~~ 220 (231)
.+.++|||+|||..+++++|+++|++||.|.. +.++.+ .+|||||+|.+.++|.+|+..|||..|.+
T Consensus 5 ~~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~~~~~~~~~v~i~~~~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g 84 (116)
T 2lcw_A 5 SDNNTIFVQGLGENVTIESVADYFKQIGIIKTNKKTGQPMINLYTDRETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSG 84 (116)
Confidence 46678999999999999999999999999998 888765 26899999999999999999999999998
Q ss_pred CCCeEEEeccC
Q 026902 221 QNPMAITFAKK 231 (231)
Q Consensus 221 ~~~l~V~~a~~ 231 (231)
++|+|.||+.
T Consensus 85 -~~l~V~~a~~ 94 (116)
T 2lcw_A 85 -NPIKVSFATR 94 (116)
Confidence 9999999863
No 346
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.66 E-value=5.1e-16 Score=107.56 Aligned_cols=88 Identities=18% Similarity=0.268 Sum_probs=71.4
Q ss_pred CCCCCCEEEEeCCCCccC--H-----HHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCcee
Q 026902 5 DIPPNQTIYIKNLNEKIK--K-----EELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPF 77 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~t--e-----~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~ 77 (231)
...++++|+|+||....+ + +++++.|+++|++||.|.+|.+ .+..++|||||+|.+.++|.+|+..|||..|
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i-~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~ 89 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLL-FDRHPDGVASVSFRDPEEADYCIQTLDGRWF 89 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEE-ETTCTTCEEEEECSCHHHHHHHHHHSTTCEE
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEE-ecCCCCEEEEEEECCHHHHHHHHHHcCCCEE
Confidence 456799999999944332 1 2233344499999999999966 5556899999999999999999999999999
Q ss_pred CCeeeEEEeccCccch
Q 026902 78 YDKPMRIQYAKSKSDC 93 (231)
Q Consensus 78 ~g~~l~v~~~~~~~~~ 93 (231)
.|++|+|.++.++...
T Consensus 90 ~gr~l~v~~a~~~~~~ 105 (112)
T 2dit_A 90 GGRQITAQAWDGTTDY 105 (112)
T ss_dssp TTEECEEEECCSCCCS
T ss_pred CCcEEEEEEeCCCCCc
Confidence 9999999999776543
No 347
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=99.65 E-value=6.1e-16 Score=114.20 Aligned_cols=77 Identities=26% Similarity=0.459 Sum_probs=71.0
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEec---CCCccceEEEEEcCHHHHHHHHHHhCCceeCCee--
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALK---TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP-- 81 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~---~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~-- 81 (231)
...++|||+|||..+++++|+ ++|+.||.|..+++.. ++.++|||||+|.+.++|.+|+..|||..+.|+.
T Consensus 86 ~~~~~l~v~nl~~~~t~~~l~----~~f~~~G~i~~~~i~~~~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~~~ 161 (167)
T 1fxl_A 86 IRDANLYVSGLPKTMTQKELE----QLFSQYGRIITSRILVDQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEP 161 (167)
T ss_dssp GTTCEEEEESCCTTCCHHHHH----HHHGGGSCEEEEEEEECTTTCCEEEEEEEEESSHHHHHHHHHHHTTCCCTTCSSC
T ss_pred CCCCcEEECCCCCcCCHHHHH----HHHHhcCCEeEEEEEecCCCCCccceEEEEeCCHHHHHHHHHHhcCCccCCCccc
Confidence 467899999999999999999 9999999999999887 5778999999999999999999999999999964
Q ss_pred eEEEec
Q 026902 82 MRIQYA 87 (231)
Q Consensus 82 l~v~~~ 87 (231)
|+|.||
T Consensus 162 i~v~~A 167 (167)
T 1fxl_A 162 ITVKFA 167 (167)
T ss_dssp CEEEEC
T ss_pred eEEEeC
Confidence 888775
No 348
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.65 E-value=7.6e-17 Score=106.84 Aligned_cols=71 Identities=24% Similarity=0.273 Sum_probs=63.4
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCC--ccCCCCCeEEEecc
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGF--KITPQNPMAITFAK 230 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~--~i~~~~~l~V~~a~ 230 (231)
.+++|||+|||..+++++|+++|++||.|..+.++.+.+|||||+|.+.++|++| ++. .+.+ ++|.|.+|+
T Consensus 4 ~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~~----~~~~~~~~g-~~l~v~~a~ 76 (88)
T 1wf0_A 4 GSSGVFVGRCTGDMTEDELREFFSQYGDVMDVFIPKPFRAFAFVTFADDQIAQSL----CGEDLIIKG-ISVHISNAE 76 (88)
T ss_dssp CCCEEEEESCCSSSCHHHHHHHSTTTSCCCEEECCSSCCSCCEEECSCHHHHHHT----TTCEEEETT-EEEEEECCC
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHHcCCeeEEEEecCCCCEEEEEECCHHHHHHH----hcCCceeCC-EEEEEEecC
Confidence 5688999999999999999999999999999999988889999999999999754 444 4477 999999986
No 349
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=99.65 E-value=3e-16 Score=121.91 Aligned_cols=77 Identities=16% Similarity=0.351 Sum_probs=70.9
Q ss_pred CCCCCCEEEecCCCCCC---------CHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCcc----
Q 026902 152 TAAPNNILFIQNLPHET---------TSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKI---- 218 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~---------t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i---- 218 (231)
....+++|||+|||..+ ++++|+.+|++||.|.+|.++.+ +|+|||+|.+.++|..|+..|||..+
T Consensus 130 ~~~~~rtLfVgnL~~~~~~~~~~~~~tEe~L~~~F~~fG~I~~v~v~~~-kG~AFV~F~~~~~Ae~A~~am~g~~l~~~~ 208 (240)
T 3u1l_A 130 FRKKNKTLYVGGIDGALNSKHLKPAQIESRIRFVFSRLGDIDRIRYVES-KNCGFVKFKYQANAEFAKEAMSNQTLLLPS 208 (240)
T ss_dssp -CCCCCEEEEECTTGGGTTCCCCHHHHHHHHHHHHHTTSCEEEEEEEGG-GTEEEEEESSHHHHHHHHHHHTTCCCCCTT
T ss_pred cccCCceeecCCCChhhhcccccccCcHHHHHHHHHccCCEEEEEEECC-CCEEEEEeCCHHHHHHHHHHhCCCEEeccc
Confidence 34577899999999998 79999999999999999999875 49999999999999999999999999
Q ss_pred --------CCCCCeEEEecc
Q 026902 219 --------TPQNPMAITFAK 230 (231)
Q Consensus 219 --------~~~~~l~V~~a~ 230 (231)
.+ +.|.|.||+
T Consensus 209 ~~e~~~~~~g-r~L~V~wA~ 227 (240)
T 3u1l_A 209 DKEWDDRREG-TGLLVKWAN 227 (240)
T ss_dssp STTGGGGGGS-CCCEEEECC
T ss_pred cccccccCCC-CEEEEEEcc
Confidence 66 999999997
No 350
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=99.64 E-value=8.9e-17 Score=109.51 Aligned_cols=73 Identities=21% Similarity=0.387 Sum_probs=67.9
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
..++|||+|||..+++++|+++|++||.|..+.+++++ +|||||+|.+.++|.+|+. ||..++| +.|.|.++.
T Consensus 8 ~~~~l~V~nLp~~~t~~~l~~~F~~~G~i~~v~i~~~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g-~~l~v~~a~ 84 (102)
T 2xs2_A 8 MPNTVFVGGIDVRMDETEIRSFFARYGSVKEVKIITDRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHG-KKLKLGPAI 84 (102)
T ss_dssp EEEEEEEECCCTTCCHHHHHHHHGGGSCEEEEEEEECTTSCEEEEEEEEESSCCCHHHHTT--CCCEETT-EECEEEEEE
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEEECCCCCccceEEEEECCHHHHHHHHh--CCCeECC-EEEEEEECC
Confidence 55789999999999999999999999999999999863 5899999999999999998 9999999 999999875
No 351
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.64 E-value=1.5e-15 Score=103.76 Aligned_cols=83 Identities=18% Similarity=0.301 Sum_probs=70.2
Q ss_pred CCCCCEEEEeCC--CCccCH----HHHHHHHHHhhccCCCeEEEEEecC-----CCccceEEEEEcCHHHHHHHHHHhCC
Q 026902 6 IPPNQTIYIKNL--NEKIKK----EELKRSLYCLFSQYGRIFDVVALKT-----PKLRGQAWVVFSEVTAASNAVRQMQN 74 (231)
Q Consensus 6 ~~~~~~v~v~nL--p~~~te----~~l~~~l~~~f~~~g~v~~v~~~~~-----~~~~g~afV~f~~~e~A~~a~~~l~g 74 (231)
..|+++|.+.|+ |....+ ++|++.|++.|++||.|.+|+++++ +.++|+|||+|.+.++|.+|++.|||
T Consensus 2 g~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG 81 (105)
T 3v4m_A 2 GHPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTG 81 (105)
T ss_dssp CSCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTT
T ss_pred CCCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCC
Confidence 468999999998 444432 2345555599999999999999873 35799999999999999999999999
Q ss_pred ceeCCeeeEEEecc
Q 026902 75 FPFYDKPMRIQYAK 88 (231)
Q Consensus 75 ~~~~g~~l~v~~~~ 88 (231)
..|.||+|+|.++.
T Consensus 82 ~~f~GR~i~v~~~~ 95 (105)
T 3v4m_A 82 RKFANRVVVTKYCD 95 (105)
T ss_dssp CEETTEECEEEEEC
T ss_pred CEeCCCEEEEEEeC
Confidence 99999999999975
No 352
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=99.64 E-value=3.5e-16 Score=119.13 Aligned_cols=75 Identities=32% Similarity=0.507 Sum_probs=71.9
Q ss_pred CCCEEEecCCCC-CCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 155 PNNILFIQNLPH-ETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 155 ~~~~l~v~nlp~-~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.+++|||+|||. .+++++|+++|++||.|..+.++++++|+|||+|.+.++|..|+..|||..+.+ ++|.|.|++
T Consensus 2 ~~~~l~v~nlp~~~~~~~~l~~~F~~~G~i~~v~i~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g-~~l~v~~a~ 77 (198)
T 1qm9_A 2 GNSVLLVSNLNPERVTPQSLFILFGVYGDVQRVKILFNKKENALVQMADGNQAQLAMSHLNGHKLHG-KPIRITLSK 77 (198)
T ss_dssp CCCEEEEECCCSSSCCHHHHHHHHHTTCCCSEEECSTTCSSCCEEECTTTHHHHHHHHHHTTCCCSS-CCCEEEECC
T ss_pred CCcEEEEeCCCcccCCHHHHHHHHHhcCCEEEEEEEeCCCCEEEEEECCHHHHHHHHHHhCCCeecC-eEEEEEEec
Confidence 457899999999 999999999999999999999999988999999999999999999999999998 999999986
No 353
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=99.63 E-value=1.6e-16 Score=113.89 Aligned_cols=74 Identities=16% Similarity=0.196 Sum_probs=67.0
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEec
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFA 229 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a 229 (231)
...++|||+|||+++|++||+++|++|| +..|.|+.+ ++|||||+|.+.++|.+|+ .+|+..|++ +.|.|.++
T Consensus 44 ~~~~~lfV~nLp~~~te~dL~~~F~~~G-i~~v~i~~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~g-R~i~V~~a 120 (139)
T 2hgn_A 44 TTGHCVHMRGLPYKATENDIYNFFSPLN-PVRVHIEIGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQH-RYIELFLN 120 (139)
T ss_dssp -CCCCEECCSCCTTCCHHHHHHHHCSCC-CSEEECCCSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSS-CCCCCEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcC-CeEEEEEECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECC-EEEEEEEC
Confidence 3567899999999999999999999999 679999875 3689999999999999999 799999999 99999887
Q ss_pred c
Q 026902 230 K 230 (231)
Q Consensus 230 ~ 230 (231)
.
T Consensus 121 ~ 121 (139)
T 2hgn_A 121 S 121 (139)
T ss_dssp C
T ss_pred C
Confidence 5
No 354
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=99.63 E-value=6.9e-16 Score=108.60 Aligned_cols=74 Identities=16% Similarity=0.221 Sum_probs=66.2
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCee--EEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGFK--EVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~--~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
....+|||+|||+++|+++|+++|++| .|. .|.++.+ ++|||||+|.+.++|.+|+. +++..|++ +.|.|.
T Consensus 40 ~~~~~lfVgnLp~~~te~dL~~~F~~~-~i~~~~v~i~~d~~GrsrGfaFV~F~~~e~A~~Al~-~~~~~l~g-R~I~V~ 116 (126)
T 2hgm_A 40 ANDGFVRLRGLPFGCTKEEIVQFFSGL-EIVPNGITLPVDPEGKITGEAFVQFASQELAEKALG-KHKERIGH-RYIEVF 116 (126)
T ss_dssp SSCCEEEEECCCTTCCHHHHHHHTTTS-CEEEEEEECCCCSSSSSCSEEEEEESSTTHHHHHHT-TTTCCBTT-BCCCCE
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHhcC-CceeeEEEEEECCCCCCceEEEEEECCHHHHHHHHH-HCCCEECC-EEEEEE
Confidence 456789999999999999999999999 566 8998875 37999999999999999998 57899998 999998
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
.+.
T Consensus 117 ~a~ 119 (126)
T 2hgm_A 117 KSS 119 (126)
T ss_dssp EEC
T ss_pred ECC
Confidence 875
No 355
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=99.62 E-value=2.4e-15 Score=120.65 Aligned_cols=78 Identities=28% Similarity=0.472 Sum_probs=71.7
Q ss_pred CCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeC-CeeeE
Q 026902 5 DIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFY-DKPMR 83 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~-g~~l~ 83 (231)
...++++|||+|||..+++++|+ ++|+.||.|.+|++..+. +|||||+|.+.++|.+|+..|||..+. |+.|+
T Consensus 203 ~~~~~~~l~v~nl~~~~~~~~l~----~~F~~~G~i~~v~~~~~~--~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~ 276 (282)
T 3pgw_A 203 ENPPNHILFLTNLPEETNELMLS----MLFNQFPGFKEVRLVPGR--HDIAFVEFDNEVQAGAARDALQGFKITQNNAMK 276 (282)
T ss_pred CCCCCCEEEEeCCCCcCCHHHHH----HHHHhcCCeEEEEEecCC--CcEEEEEeCCHHHHHHHHHHcCCcEeCCCCEEE
Confidence 34568999999999999999999 999999999999997542 699999999999999999999999999 99999
Q ss_pred EEecc
Q 026902 84 IQYAK 88 (231)
Q Consensus 84 v~~~~ 88 (231)
|.|++
T Consensus 277 v~~ak 281 (282)
T 3pgw_A 277 ISFAK 281 (282)
T ss_pred EEEec
Confidence 99985
No 356
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.62 E-value=4.7e-16 Score=109.14 Aligned_cols=75 Identities=16% Similarity=0.178 Sum_probs=66.7
Q ss_pred CCCCEEEecCCCCCCCHHHHHHHhccCCCe----eEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCeE
Q 026902 154 APNNILFIQNLPHETTSSMLEMLFQQYPGF----KEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPMA 225 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v----~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~ 225 (231)
....+|||+|||+++|++||+++|++||.| ..|.|+.+. +|||||+|.+.++|.+|+.. |+..+++ +.|.
T Consensus 21 ~~~~~v~V~nLp~~~te~dl~~~F~~~g~v~g~v~~v~i~~d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~g-R~i~ 98 (123)
T 2dha_A 21 ENQVIVRMRGLPFTATAEEVVAFFGQHCPITGGKEGILFVTYPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGK-RYIE 98 (123)
T ss_dssp CSCCEEEECSCCTTCCHHHHHHHHHTTSCCTTGGGGEEEEECTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSS-CEEC
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhhCCccCCcceEEEEECCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCC-eEEE
Confidence 356789999999999999999999999975 688888752 68999999999999999986 9999998 9999
Q ss_pred EEecc
Q 026902 226 ITFAK 230 (231)
Q Consensus 226 V~~a~ 230 (231)
|..|.
T Consensus 99 V~~a~ 103 (123)
T 2dha_A 99 LFRST 103 (123)
T ss_dssp CEEEC
T ss_pred EEECC
Confidence 98774
No 357
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.60 E-value=4.5e-15 Score=102.75 Aligned_cols=78 Identities=15% Similarity=0.267 Sum_probs=67.4
Q ss_pred CCCCCCEEEecCCCCCCC-----------HHHHHHHhccCCCeeEEEEee-CCCcEEEEEecCHHHHHHHHHHhcCCccC
Q 026902 152 TAAPNNILFIQNLPHETT-----------SSMLEMLFQQYPGFKEVRMIE-AKPGIAFVEFEDDVQSSMAMQALQGFKIT 219 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t-----------~~~l~~~f~~~g~v~~v~~~~-~~~g~afV~f~~~~~A~~A~~~lng~~i~ 219 (231)
...++++|+|+||..... +++|+++|++||.|..+.+.. ..+|+|||+|.+.++|.+|+..|||..|+
T Consensus 11 ~~~~s~~l~l~Nl~~~~~~~~~~~~~~~~e~~l~~~f~~~G~v~~v~i~~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~ 90 (112)
T 2dit_A 11 RMRHERVVIIKNMFHPMDFEDDPLVLNEIREDLRVECSKFGQIRKLLLFDRHPDGVASVSFRDPEEADYCIQTLDGRWFG 90 (112)
T ss_dssp CCCSCCEEEEESSCCTTHHHHCSHHHHHHHHHHHHHGGGTSCCSEEEEETTCTTCEEEEECSCHHHHHHHHHHSTTCEET
T ss_pred CCCCceEEEEEcCCCHHHhccCHHHHHHHHHHHHHHHHccCCEeEEEEecCCCCEEEEEEECCHHHHHHHHHHcCCCEEC
Confidence 445788999999954432 589999999999999997743 24799999999999999999999999999
Q ss_pred CCCCeEEEecc
Q 026902 220 PQNPMAITFAK 230 (231)
Q Consensus 220 ~~~~l~V~~a~ 230 (231)
+ ++|+|.|++
T Consensus 91 g-r~l~v~~a~ 100 (112)
T 2dit_A 91 G-RQITAQAWD 100 (112)
T ss_dssp T-EECEEEECC
T ss_pred C-cEEEEEEeC
Confidence 8 999999985
No 358
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=99.60 E-value=2.5e-15 Score=102.62 Aligned_cols=76 Identities=24% Similarity=0.351 Sum_probs=66.4
Q ss_pred CCCCEEEecCC--CCCCC--------HHHHHHHhccCCCeeEEEEeeC-------CCcEEEEEecCHHHHHHHHHHhcCC
Q 026902 154 APNNILFIQNL--PHETT--------SSMLEMLFQQYPGFKEVRMIEA-------KPGIAFVEFEDDVQSSMAMQALQGF 216 (231)
Q Consensus 154 ~~~~~l~v~nl--p~~~t--------~~~l~~~f~~~g~v~~v~~~~~-------~~g~afV~f~~~~~A~~A~~~lng~ 216 (231)
.|+++|.|.|+ |.... ++||++.|++||.|.++.++++ .+|+|||+|.++++|.+|+..|||.
T Consensus 3 ~ps~vl~L~Nm~~~~~l~~d~~~~~~~~dl~~~f~k~G~V~~v~i~~~~~~~~~~~~G~~fV~f~~~~~A~~Ai~~lnG~ 82 (105)
T 3v4m_A 3 HPTEVLCLMNMVLPEELLDDEEYEEIVEDVRDECSKYGLVKSIEIPRPVDGVEVPGCGKIFVEFTSVFDCQKAMQGLTGR 82 (105)
T ss_dssp SCCSEEEEESSCCGGGSSSHHHHHHHHHHHHHHHHTTSCEEEEECCCCBTTBCCTTTTEEEEEESSHHHHHHHHHHHTTC
T ss_pred CCCeEEEEECCCCHHHccChHHHHHHHHHHHHHHHccCCEEEEEEeccCCCCCcCCcEEEEEEECCHHHHHHHHHHhCCC
Confidence 36788999998 33333 3799999999999999999875 3699999999999999999999999
Q ss_pred ccCCCCCeEEEecc
Q 026902 217 KITPQNPMAITFAK 230 (231)
Q Consensus 217 ~i~~~~~l~V~~a~ 230 (231)
.++| ++|+|.|+.
T Consensus 83 ~f~G-R~i~v~~~~ 95 (105)
T 3v4m_A 83 KFAN-RVVVTKYCD 95 (105)
T ss_dssp EETT-EECEEEEEC
T ss_pred EeCC-CEEEEEEeC
Confidence 9999 999999863
No 359
>2voo_A Lupus LA protein; RNA-binding protein, RNA recognition motif, systemic lupus erythematosus, phosphoprotein, RNA maturation; 1.8A {Homo sapiens} SCOP: a.4.5.46 d.58.7.1 PDB: 2von_A 2vod_A 2vop_A 1zh5_A 1yty_A 1s7a_A
Probab=99.59 E-value=4.2e-15 Score=112.70 Aligned_cols=74 Identities=18% Similarity=0.282 Sum_probs=67.0
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC----CCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA----KPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~----~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
..++|||+|||..+++++|.++|++||.|..|.++++ .+|+|||+|.+.++|.+|+..+ +..++| ++|.|.+++
T Consensus 108 ~~~~l~V~nLp~~~t~~~L~~~F~~~G~v~~v~i~~~~~~~~kG~aFVeF~~~e~A~~A~~~~-~~~~~G-r~l~V~~~~ 185 (193)
T 2voo_A 108 KNRSVYIKGFPTDATLDDIKEWLEDKGQVLNIQMRRTLHKAFKGSIFVVFDSIESAKKFVETP-GQKYKE-TDLLILFKD 185 (193)
T ss_dssp HHTEEEEECCCTTCCHHHHHHHHTTSCCEEEEEEEECTTCCEEEEEEEEESSHHHHHHHHHCT-TCEETT-EECEEEETT
T ss_pred ccCEEEecCCCCcCCHHHHHHHHhcCCCEEEEEEEECCCCCcccEEEEEECCHHHHHHHHHhC-CCeECC-EEEEEEEhH
Confidence 3467999999999999999999999999999999875 3689999999999999999766 458998 999999986
No 360
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.59 E-value=4.3e-15 Score=103.41 Aligned_cols=81 Identities=12% Similarity=0.256 Sum_probs=68.5
Q ss_pred CCCCEEEEeCCCCc--cCHHHHHHHHHHhhccCCCeEEEEEecC-------CCccceEEEEEcCHHHHHHHHHHhCCcee
Q 026902 7 PPNQTIYIKNLNEK--IKKEELKRSLYCLFSQYGRIFDVVALKT-------PKLRGQAWVVFSEVTAASNAVRQMQNFPF 77 (231)
Q Consensus 7 ~~~~~v~v~nLp~~--~te~~l~~~l~~~f~~~g~v~~v~~~~~-------~~~~g~afV~f~~~e~A~~a~~~l~g~~~ 77 (231)
+++++|+|+|+-.. +. +||++.|++.|++||.|.+|+++++ +.++|+|||+|.+.++|.+|+..|||..|
T Consensus 18 ~ps~vl~L~Nm~~~~el~-ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f 96 (118)
T 3ue2_A 18 QESTVMVLRNMVDPKDID-DDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 96 (118)
T ss_dssp HSCCEEEEESCSCGGGCC-TTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEE
T ss_pred CCCCEEEEECCCCHHHHH-HHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEE
Confidence 47999999999432 22 3355555599999999999999873 34679999999999999999999999999
Q ss_pred CCeeeEEEecc
Q 026902 78 YDKPMRIQYAK 88 (231)
Q Consensus 78 ~g~~l~v~~~~ 88 (231)
.||.|+|.|+.
T Consensus 97 ~GR~i~v~~~~ 107 (118)
T 3ue2_A 97 AGRKVVAEVYD 107 (118)
T ss_dssp TTEECEEEEEC
T ss_pred CCcEEEEEEcC
Confidence 99999999975
No 361
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=99.58 E-value=5.4e-15 Score=117.43 Aligned_cols=77 Identities=29% Similarity=0.470 Sum_probs=71.4
Q ss_pred CCCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 152 TAAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
.....++|||+|||.++|+++|+++|++||.|..+.+.++ +|+|||+|.+.++|..|+..|||..|.+ ++|.|.|+.
T Consensus 18 ~~~~~~~l~V~nLp~~~te~~l~~~F~~~G~i~~v~i~~~-kg~afV~f~~~~~A~~A~~~l~g~~i~g-~~l~v~~a~ 94 (261)
T 3sde_A 18 TYTQRCRLFVGNLPTDITEEDFKRLFERYGEPSEVFINRD-RGFGFIRLESRTLAEIAKAELDGTILKS-RPLRIRFAT 94 (261)
T ss_dssp SSCGGGEEEEESCCTTCCHHHHHHHTGGGCCCSEEEEETT-TTEEEEECSSHHHHHHHHHHHTTCEETT-EECEEEECC
T ss_pred CCCCCCEEEEECCCCCCCHHHHHHHHHhcCCEEEEEEeCC-CcEEEEEECCHHHHHHHHHHcCCcEECC-ceeEeeecc
Confidence 3456678999999999999999999999999999999776 4999999999999999999999999999 999999985
No 362
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.58 E-value=2.2e-14 Score=99.18 Aligned_cols=82 Identities=18% Similarity=0.228 Sum_probs=72.3
Q ss_pred CCCCCEEEEeCCCCccC------HHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCC
Q 026902 6 IPPNQTIYIKNLNEKIK------KEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD 79 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~t------e~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g 79 (231)
..++++|.+.|+=.... .++|++.|++.|++||.|.+|.+.++. ++|+|||+|.+.++|.+|++.|||..|.|
T Consensus 4 p~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~-~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G 82 (114)
T 3s6e_A 4 PLATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNS-AQGNVYVKCPSIAAAIAAVNALHGRWFAG 82 (114)
T ss_dssp CCCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTC-TTCCEEEECSSHHHHHHHHHHHTTCEETT
T ss_pred CCCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCC-CcEEEEEEECCHHHHHHHHHHhCCCEECC
Confidence 45789999999865544 477888888999999999999997653 59999999999999999999999999999
Q ss_pred eeeEEEecc
Q 026902 80 KPMRIQYAK 88 (231)
Q Consensus 80 ~~l~v~~~~ 88 (231)
|.|+|.|+.
T Consensus 83 R~i~v~~~~ 91 (114)
T 3s6e_A 83 KMITAAYVP 91 (114)
T ss_dssp EECEEEEEC
T ss_pred EEEEEEEEc
Confidence 999999974
No 363
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.56 E-value=1.8e-15 Score=103.25 Aligned_cols=74 Identities=19% Similarity=0.372 Sum_probs=62.7
Q ss_pred EeCCCCccCHHHHH-------HHHHHhh-ccCCCeEEEEEec--CCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeE
Q 026902 14 IKNLNEKIKKEELK-------RSLYCLF-SQYGRIFDVVALK--TPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMR 83 (231)
Q Consensus 14 v~nLp~~~te~~l~-------~~l~~~f-~~~g~v~~v~~~~--~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~ 83 (231)
+.|||..+++++|+ +.|++.| ++||+|.+|.+++ ++.++|||||+|.+.++|.+|+..|||..+.||+|+
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~ 99 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIH 99 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEE
Confidence 45666777777776 3334666 9999999999987 467899999999999999999999999999999999
Q ss_pred EEec
Q 026902 84 IQYA 87 (231)
Q Consensus 84 v~~~ 87 (231)
|.|+
T Consensus 100 v~~s 103 (104)
T 1jmt_A 100 AELS 103 (104)
T ss_dssp EEEC
T ss_pred EEEc
Confidence 9886
No 364
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.56 E-value=7.4e-15 Score=101.97 Aligned_cols=58 Identities=17% Similarity=0.344 Sum_probs=52.7
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeC--------CCcEEEEEecCHHHHHHHHHHh
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEA--------KPGIAFVEFEDDVQSSMAMQAL 213 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~--------~~g~afV~f~~~~~A~~A~~~l 213 (231)
..++|||+|||..+++++|+++|++||.|. +.++.+ .+|||||+|.+.++|.+|+..|
T Consensus 7 ~~~~lfVgnLp~~~te~~L~~~F~~~G~i~-~~~~~~~~~~~~g~~~G~aFV~f~~~~~a~~Ai~~~ 72 (114)
T 2dnl_A 7 GSRKVFVGGLPPDIDEDEITASFRRFGPLV-VDWPHKAESKSYFPPKGYAFLLFQEESSVQALIDAC 72 (114)
T ss_dssp CCCCEEEECCCTTCCHHHHHHHTTTTCCCC-EECTTSSSSCCCSCTTSEEEECCSSHHHHHHHHHHS
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHhcCCEE-EEEeecCCCCCCCCcccEEEEEECCHHHHHHHHHhh
Confidence 567799999999999999999999999999 777653 2689999999999999999999
No 365
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.55 E-value=1.2e-14 Score=118.60 Aligned_cols=76 Identities=8% Similarity=0.194 Sum_probs=67.8
Q ss_pred CCCCCEEEEeC--CCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeC---Ce
Q 026902 6 IPPNQTIYIKN--LNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFY---DK 80 (231)
Q Consensus 6 ~~~~~~v~v~n--Lp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~---g~ 80 (231)
..++++|||+| |++.+|+++|+ ++|++||.|.+|.+. .+||||||+|.+.++|++|++.|||..+. |+
T Consensus 15 ~~ps~~l~VgN~gl~~~~te~~L~----~~F~~~G~V~~v~~~---~~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~ 87 (345)
T 3tht_A 15 SYATQSLVVANGGLGNGVSRNQLL----PVLEKCGLVDALLMP---PNKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQ 87 (345)
T ss_dssp SSCCSEEEEETCSGGGTCCHHHHH----HHHHTTSCEEEEECC---TTCSEEEEEESSHHHHHHHHHHTTTCEEECTTSC
T ss_pred CCCCCEEEEEcCCCCCCCCHHHHH----HHHHhcCCeEEEEEe---CCCCEEEEEECCHHHHHHHHHHhCCCccccccCC
Confidence 57899999999 58999999999 999999999999884 47899999999999999999999998873 45
Q ss_pred --eeEEEecc
Q 026902 81 --PMRIQYAK 88 (231)
Q Consensus 81 --~l~v~~~~ 88 (231)
++.+.|+.
T Consensus 88 ~~~ly~~~~~ 97 (345)
T 3tht_A 88 KITLYLNFVE 97 (345)
T ss_dssp EEECEEEECS
T ss_pred ceEEEEEEee
Confidence 68888875
No 366
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=99.55 E-value=5.1e-15 Score=102.68 Aligned_cols=73 Identities=8% Similarity=0.133 Sum_probs=64.4
Q ss_pred CEEEecCC----CCCCCHHHHHHHhccCCCeeEEEEeeCC-----CcEEEEEecC----HHH----HHHHHH--HhcCCc
Q 026902 157 NILFIQNL----PHETTSSMLEMLFQQYPGFKEVRMIEAK-----PGIAFVEFED----DVQ----SSMAMQ--ALQGFK 217 (231)
Q Consensus 157 ~~l~v~nl----p~~~t~~~l~~~f~~~g~v~~v~~~~~~-----~g~afV~f~~----~~~----A~~A~~--~lng~~ 217 (231)
..|||+|| |+.+++++|+++|+.||.|.++.++.|+ +|||||+|.+ +++ |.+|+. .|||..
T Consensus 3 ~kI~VgnL~~~~~~~tte~~Lk~~Fs~fGeV~~~~li~Dp~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~ 82 (136)
T 2j8a_A 3 CEIVVYPAQDSTTTNIQDISIKNYFKKYGEISHFEAFNDPNSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCF 82 (136)
T ss_dssp CEEEEEESSSSCCCCCCHHHHHHHHHTTSCCSEEEEEECTTTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEE
T ss_pred cEEEEeCCCCCCCCCCCHHHHHHHHHhcCCeEEEEEEecCCCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCe
Confidence 46999999 9999999999999999999999999974 6999999996 544 788888 789999
Q ss_pred cCCCCCeEEEecc
Q 026902 218 ITPQNPMAITFAK 230 (231)
Q Consensus 218 i~~~~~l~V~~a~ 230 (231)
|+| ++|+|.+-+
T Consensus 83 I~G-r~irV~ln~ 94 (136)
T 2j8a_A 83 IMG-FKFEVILNK 94 (136)
T ss_dssp ETT-EEEEEEECC
T ss_pred ecC-cEEEEEECc
Confidence 999 999998743
No 367
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.54 E-value=5.9e-14 Score=94.68 Aligned_cols=73 Identities=25% Similarity=0.333 Sum_probs=62.4
Q ss_pred CCCEEEecCCC-------CCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 155 PNNILFIQNLP-------HETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 155 ~~~~l~v~nlp-------~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
..++|.|.-.. ..+++++|+++|++||.|..|.++..++|||||+|.+.++|..|+..+++ +.+ ++|+|.
T Consensus 9 ~~~~~~v~w~~~~~~~~~~~~te~~L~~~F~~~G~V~~v~i~~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g-~~l~V~ 85 (100)
T 2d9o_A 9 GTPKLKLKWKCKKEDESKGGYSKDVLLRLLQKYGEVLNLVLSSKKPGTAVVEFATVKAAELAVQNEVG--LVD-NPLKIS 85 (100)
T ss_dssp SSCEEEEECCCCSSCSCCCSCCHHHHHHHHHTTSCEEEEEEESSSSSEEEEEESCHHHHHHHHHTCCB--CSS-SBCEEE
T ss_pred ccceEEEeeeccCccCcCCCCCHHHHHHHHHhcCCEEEEEEccCCCCEEEEEECCHHHHHHHHHhcCC--CCC-CeEEEE
Confidence 34567666443 45899999999999999999999977789999999999999999998655 566 999999
Q ss_pred ecc
Q 026902 228 FAK 230 (231)
Q Consensus 228 ~a~ 230 (231)
||+
T Consensus 86 ~a~ 88 (100)
T 2d9o_A 86 WLE 88 (100)
T ss_dssp CSS
T ss_pred Ecc
Confidence 987
No 368
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=99.54 E-value=1.8e-14 Score=100.27 Aligned_cols=75 Identities=16% Similarity=0.200 Sum_probs=66.2
Q ss_pred CCCEEEecCCCCC--C---CHHHHHHHhccCCCeeEEEEeeCC---------CcEEEEEecCHHHHHHHHHHhcCCccCC
Q 026902 155 PNNILFIQNLPHE--T---TSSMLEMLFQQYPGFKEVRMIEAK---------PGIAFVEFEDDVQSSMAMQALQGFKITP 220 (231)
Q Consensus 155 ~~~~l~v~nlp~~--~---t~~~l~~~f~~~g~v~~v~~~~~~---------~g~afV~f~~~~~A~~A~~~lng~~i~~ 220 (231)
++++|+|.|+-.. + .++||++.|++||.|.+|.+++++ +|++||+|.++++|.+|+..|||..|+|
T Consensus 19 ps~vl~L~Nm~~~~el~ddleedl~eef~k~G~V~~v~I~~~~~~~~~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~G 98 (118)
T 3ue2_A 19 ESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG 98 (118)
T ss_dssp SCCEEEEESCSCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEEESSSTTCEEEEEEEEEESSHHHHHHHHHHHTTCEETT
T ss_pred CCCEEEEECCCCHHHHHHHHHHHHHHHHhccCCEeEEEEeecCCCcccCCcceEEEEEEECCHHHHHHHHHHHCCCEECC
Confidence 6789999998432 2 379999999999999999998753 3899999999999999999999999999
Q ss_pred CCCeEEEecc
Q 026902 221 QNPMAITFAK 230 (231)
Q Consensus 221 ~~~l~V~~a~ 230 (231)
++|+|.|+.
T Consensus 99 -R~i~v~~~~ 107 (118)
T 3ue2_A 99 -RKVVAEVYD 107 (118)
T ss_dssp -EECEEEEEC
T ss_pred -cEEEEEEcC
Confidence 999999863
No 369
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.53 E-value=8.6e-14 Score=93.89 Aligned_cols=79 Identities=25% Similarity=0.348 Sum_probs=67.0
Q ss_pred CCCCCEEEEeCCC-------CccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeC
Q 026902 6 IPPNQTIYIKNLN-------EKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFY 78 (231)
Q Consensus 6 ~~~~~~v~v~nLp-------~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~ 78 (231)
....++|-|...+ ..+++++|+ ++|++||.|.+|.++ +.++|||||+|.+.++|.+|+..++ .+.
T Consensus 7 ~~~~~~~~v~w~~~~~~~~~~~~te~~L~----~~F~~~G~V~~v~i~--~~~rGfaFVeF~~~~~A~~Ai~~~~--~~~ 78 (100)
T 2d9o_A 7 GQGTPKLKLKWKCKKEDESKGGYSKDVLL----RLLQKYGEVLNLVLS--SKKPGTAVVEFATVKAAELAVQNEV--GLV 78 (100)
T ss_dssp CCSSCEEEEECCCCSSCSCCCSCCHHHHH----HHHHTTSCEEEEEEE--SSSSSEEEEEESCHHHHHHHHHTCC--BCS
T ss_pred CCccceEEEeeeccCccCcCCCCCHHHHH----HHHHhcCCEEEEEEc--cCCCCEEEEEECCHHHHHHHHHhcC--CCC
Confidence 3446788888776 358999999 999999999999997 5789999999999999999999744 467
Q ss_pred CeeeEEEeccCccc
Q 026902 79 DKPMRIQYAKSKSD 92 (231)
Q Consensus 79 g~~l~v~~~~~~~~ 92 (231)
|++|+|.|+..+..
T Consensus 79 g~~l~V~~a~~~~~ 92 (100)
T 2d9o_A 79 DNPLKISWLEGQPQ 92 (100)
T ss_dssp SSBCEEECSSCCCC
T ss_pred CCeEEEEEccCCCC
Confidence 99999999876543
No 370
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=99.52 E-value=4.5e-14 Score=97.60 Aligned_cols=76 Identities=11% Similarity=0.110 Sum_probs=66.3
Q ss_pred CCCCEEEecCCCCCC----------CHHHHHHHhccCCCeeEEEEeeCC-CcEEEEEecCHHHHHHHHHHhcCCccCCCC
Q 026902 154 APNNILFIQNLPHET----------TSSMLEMLFQQYPGFKEVRMIEAK-PGIAFVEFEDDVQSSMAMQALQGFKITPQN 222 (231)
Q Consensus 154 ~~~~~l~v~nlp~~~----------t~~~l~~~f~~~g~v~~v~~~~~~-~g~afV~f~~~~~A~~A~~~lng~~i~~~~ 222 (231)
.++++|.|.|+=..- .++||++.|++||.|.++.+.++. +|+|||+|.+.++|.+|+..|||..|+| +
T Consensus 5 ~ps~vv~L~Nm~~~~e~~d~~~~~el~edl~~~f~kfG~V~~v~i~~~~~~G~~fV~f~~~e~A~~Ai~~lnG~~f~G-R 83 (114)
T 3s6e_A 5 LATQCFQLSNMFNPQTEEEVGWDTEIKDDVIEECNKHGGVIHIYVDKNSAQGNVYVKCPSIAAAIAAVNALHGRWFAG-K 83 (114)
T ss_dssp CCCSEEEEESSCCTTTCCSTTHHHHHHHHHHHHHTTTTCCSEEEECTTCTTCCEEEECSSHHHHHHHHHHHTTCEETT-E
T ss_pred CCCcEEEEECCCChHHccChhHHHHHHHHHHHHHhccCCEEEEEEecCCCcEEEEEEECCHHHHHHHHHHhCCCEECC-E
Confidence 467889999974322 246889999999999999998764 7999999999999999999999999999 9
Q ss_pred CeEEEecc
Q 026902 223 PMAITFAK 230 (231)
Q Consensus 223 ~l~V~~a~ 230 (231)
.|+|.|+.
T Consensus 84 ~i~v~~~~ 91 (114)
T 3s6e_A 84 MITAAYVP 91 (114)
T ss_dssp ECEEEEEC
T ss_pred EEEEEEEc
Confidence 99999974
No 371
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=99.52 E-value=2e-14 Score=117.38 Aligned_cols=78 Identities=14% Similarity=0.221 Sum_probs=68.0
Q ss_pred CCCCCCEEEecC--CCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCC--CC--CeE
Q 026902 152 TAAPNNILFIQN--LPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITP--QN--PMA 225 (231)
Q Consensus 152 ~~~~~~~l~v~n--lp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~--~~--~l~ 225 (231)
...++++|||+| |+..+|+++|+++|++||.|.+|.+.+ ++|||||+|.+.++|++|+..|||..+-+ |+ +|.
T Consensus 14 ~~~ps~~l~VgN~gl~~~~te~~L~~~F~~~G~V~~v~~~~-~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly 92 (345)
T 3tht_A 14 VSYATQSLVVANGGLGNGVSRNQLLPVLEKCGLVDALLMPP-NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLY 92 (345)
T ss_dssp CSSCCSEEEEETCSGGGTCCHHHHHHHHHTTSCEEEEECCT-TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECE
T ss_pred cCCCCCEEEEEcCCCCCCCCHHHHHHHHHhcCCeEEEEEeC-CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEE
Confidence 456788999999 578899999999999999999998877 45999999999999999999999998832 24 688
Q ss_pred EEecc
Q 026902 226 ITFAK 230 (231)
Q Consensus 226 V~~a~ 230 (231)
|.|++
T Consensus 93 ~~~~~ 97 (345)
T 3tht_A 93 LNFVE 97 (345)
T ss_dssp EEECS
T ss_pred EEEee
Confidence 88875
No 372
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=99.49 E-value=6.2e-15 Score=100.53 Aligned_cols=68 Identities=13% Similarity=0.282 Sum_probs=59.3
Q ss_pred ecCCCCCCCHHHHHHHh------------ccCCCeeEEEEeeCC----CcEEEEEecCHHHHHHHHHHhcCCccCCCCCe
Q 026902 161 IQNLPHETTSSMLEMLF------------QQYPGFKEVRMIEAK----PGIAFVEFEDDVQSSMAMQALQGFKITPQNPM 224 (231)
Q Consensus 161 v~nlp~~~t~~~l~~~f------------~~~g~v~~v~~~~~~----~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l 224 (231)
+.|||..+++++|+++| ++||.|.++.++++. +|+|||+|.++++|.+|+..|||..++| ++|
T Consensus 20 ~~~l~~~~~~~~l~~~f~~~~edl~~~f~~~~G~V~~v~i~~~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~G-r~i 98 (104)
T 1jmt_A 20 ADGLRSAVSDVEMQEHYDEFFEEVFTEMEEKYGEVEEMNVCDNLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNG-QPI 98 (104)
T ss_dssp -CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCEEEEEECCSSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETT-EEC
T ss_pred cCCcccccCHHHHHHHHHHHHHHHHHHhhccCCceEEEEEEeCCCCCccEEEEEEECCHHHHHHHHHHHCCCEECC-EEE
Confidence 45666667777777666 999999999999863 7999999999999999999999999999 999
Q ss_pred EEEec
Q 026902 225 AITFA 229 (231)
Q Consensus 225 ~V~~a 229 (231)
+|.|+
T Consensus 99 ~v~~s 103 (104)
T 1jmt_A 99 HAELS 103 (104)
T ss_dssp CEEEC
T ss_pred EEEEc
Confidence 99986
No 373
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.39 E-value=3.5e-12 Score=82.92 Aligned_cols=81 Identities=15% Similarity=0.299 Sum_probs=69.7
Q ss_pred CCCCCEEEEeCCC----CccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 6 IPPNQTIYIKNLN----EKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 6 ~~~~~~v~v~nLp----~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
.++..||+|...| ...-.++|...|.+.|++||.|..+++..+ .+||+|.+.++|.+|+. |||..+.||.
T Consensus 4 GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d-----~~fVtF~d~~sAlaAi~-mnG~~v~Gr~ 77 (91)
T 2dnr_A 4 GSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVED-----KMWVTFLEGSSALNVLS-LNGKELLNRT 77 (91)
T ss_dssp CCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSS-----SEEEEESSHHHHHHGGG-GTTCEETTEE
T ss_pred CCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecC-----CEEEEECChHHHHHHHh-cCCeEeCCeE
Confidence 5789999999887 345566777778899999999999999653 39999999999999999 9999999999
Q ss_pred eEEEeccCccc
Q 026902 82 MRIQYAKSKSD 92 (231)
Q Consensus 82 l~v~~~~~~~~ 92 (231)
|+|..+.+.+.
T Consensus 78 LkV~lkt~dW~ 88 (91)
T 2dnr_A 78 ITIALKSPSGP 88 (91)
T ss_dssp EEEEECCCSSC
T ss_pred EEEEeCCCCcc
Confidence 99999876553
No 374
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.37 E-value=1.6e-12 Score=84.53 Aligned_cols=74 Identities=14% Similarity=0.260 Sum_probs=63.8
Q ss_pred CCCCCCEEEecCCC----CCCCH----HHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCC
Q 026902 152 TAAPNNILFIQNLP----HETTS----SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNP 223 (231)
Q Consensus 152 ~~~~~~~l~v~nlp----~~~t~----~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~ 223 (231)
..|+..||+|...+ .++-+ .+|.+.|++||.|..++++.++ +||+|.+.++|.+|++ |||..+.| +.
T Consensus 3 ~GPpd~tv~V~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vi~vr~~~d~---~fVtF~d~~sAlaAi~-mnG~~v~G-r~ 77 (91)
T 2dnr_A 3 SGSSGGTVLVSIKSSLPENNFFDDALIDELLQQFASFGEVILIRFVEDK---MWVTFLEGSSALNVLS-LNGKELLN-RT 77 (91)
T ss_dssp CCCSSCEEEEEEECSSTTTCSCCHHHHHHHHHHHHTTCCEEEEEECSSS---EEEEESSHHHHHHGGG-GTTCEETT-EE
T ss_pred CCCCCCeEEEEeccCccccccCCHHHHHHHHHHHHhCCCeEEEEEecCC---EEEEECChHHHHHHHh-cCCeEeCC-eE
Confidence 34577788887766 23444 7788999999999999999877 8999999999999998 99999999 99
Q ss_pred eEEEecc
Q 026902 224 MAITFAK 230 (231)
Q Consensus 224 l~V~~a~ 230 (231)
|+|.+++
T Consensus 78 LkV~lkt 84 (91)
T 2dnr_A 78 ITIALKS 84 (91)
T ss_dssp EEEEECC
T ss_pred EEEEeCC
Confidence 9999986
No 375
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.33 E-value=9.8e-12 Score=86.04 Aligned_cols=76 Identities=9% Similarity=0.124 Sum_probs=68.2
Q ss_pred CCCCCCEEEecCCCCC-CCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecC-HHHHHHHHHHhc--CCccCCCCCeEEE
Q 026902 152 TAAPNNILFIQNLPHE-TTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFED-DVQSSMAMQALQ--GFKITPQNPMAIT 227 (231)
Q Consensus 152 ~~~~~~~l~v~nlp~~-~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~-~~~A~~A~~~ln--g~~i~~~~~l~V~ 227 (231)
.-+++..|+|+||+.. ++.++|+++|++||.|.+|.+.+++. +|||.|.+ ..+|..|+..|| |..|.+ ..++++
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLke~F~~~G~V~~Vd~~~g~~-tgfVrf~~~~~~A~~av~~ln~~~~~i~g-~~~~~e 91 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLHILFSNHGEIKWIDFVRGAK-EGIILFKEKAKEALGKAKDANNGNLQLRN-KEVTWE 91 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHHHHTCSSCCEEEEECCTTCS-EEEEEESSCHHHHHHHHHHTTTSCBCTTS-SSEEEE
T ss_pred cccCCeEEEEecCCCCcCCHHHHHHHHHhcCCEEEEEEecCCC-EEEEEECCChHHHHHHHHHhhcCCcEEeC-cEEEEE
Confidence 4457889999999999 99999999999999999999999885 89999999 789999999995 788988 888876
Q ss_pred ec
Q 026902 228 FA 229 (231)
Q Consensus 228 ~a 229 (231)
..
T Consensus 92 vL 93 (121)
T 1owx_A 92 VL 93 (121)
T ss_dssp EC
T ss_pred EC
Confidence 53
No 376
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=8.9e-11 Score=81.21 Aligned_cols=77 Identities=16% Similarity=0.201 Sum_probs=67.3
Q ss_pred CCCCCCEEEEeCCCCc-cCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcC-HHHHHHHHHHhC--CceeCCe
Q 026902 5 DIPPNQTIYIKNLNEK-IKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSE-VTAASNAVRQMQ--NFPFYDK 80 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~~-~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~-~e~A~~a~~~l~--g~~~~g~ 80 (231)
.-+++..|||+||+.. +++++|+ ++|+.||+|..|.+.++ ...|||.|.+ .++|.+|+..+| +..+.|.
T Consensus 14 ~~~~G~il~v~~l~~~~~sredLk----e~F~~~G~V~~Vd~~~g---~~tgfVrf~~~~~~A~~av~~ln~~~~~i~g~ 86 (121)
T 1owx_A 14 EEKIGCLLKFSGDLDDQTCREDLH----ILFSNHGEIKWIDFVRG---AKEGIILFKEKAKEALGKAKDANNGNLQLRNK 86 (121)
T ss_dssp SCCCCCEEEEEESCCSSCCHHHHH----HHTCSSCCEEEEECCTT---CSEEEEEESSCHHHHHHHHHHTTTSCBCTTSS
T ss_pred cccCCeEEEEecCCCCcCCHHHHH----HHHHhcCCEEEEEEecC---CCEEEEEECCChHHHHHHHHHhhcCCcEEeCc
Confidence 3578999999999999 9999999 99999999999999654 3369999999 899999999994 6889998
Q ss_pred eeEEEecc
Q 026902 81 PMRIQYAK 88 (231)
Q Consensus 81 ~l~v~~~~ 88 (231)
.+.+....
T Consensus 87 ~~~~evL~ 94 (121)
T 1owx_A 87 EVTWEVLE 94 (121)
T ss_dssp SEEEEECC
T ss_pred EEEEEECC
Confidence 88887654
No 377
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.22 E-value=1.8e-11 Score=79.89 Aligned_cols=77 Identities=17% Similarity=0.240 Sum_probs=66.0
Q ss_pred CCCCCCEEEEeCCCC-----ccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCC
Q 026902 5 DIPPNQTIYIKNLNE-----KIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD 79 (231)
Q Consensus 5 ~~~~~~~v~v~nLp~-----~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g 79 (231)
-.+|..||+|..++. .+-.++|...|.+.|.+||.|..+++..+. +||+|.+.++|.+|+. |||..+.|
T Consensus 11 ~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~-----~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 11 QGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ-----MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE-----EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred cCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc-----EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 358899999999874 344566667777999999999999996543 9999999999999999 99999999
Q ss_pred eeeEEEec
Q 026902 80 KPMRIQYA 87 (231)
Q Consensus 80 ~~l~v~~~ 87 (231)
|.|+|.+.
T Consensus 85 r~L~V~~k 92 (95)
T 1ufw_A 85 RAVKISGP 92 (95)
T ss_dssp EEEEEECC
T ss_pred eEEEEecc
Confidence 99999864
No 378
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=99.19 E-value=1.9e-11 Score=79.86 Aligned_cols=75 Identities=13% Similarity=0.191 Sum_probs=64.5
Q ss_pred CCCCCCCCEEEecCCCCC-----CCH----HHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCC
Q 026902 150 QETAAPNNILFIQNLPHE-----TTS----SMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITP 220 (231)
Q Consensus 150 ~~~~~~~~~l~v~nlp~~-----~t~----~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~ 220 (231)
....|+..||+|..++.+ +-+ .+|.+.|++||.|..+++..++ +||+|.+.++|.+|+. |||.++++
T Consensus 9 ~~~GPpD~Tv~V~~~~~~~~~~~~fd~~l~~~L~~~F~~~G~Vilvr~v~d~---~fVtF~d~~sAl~AI~-ldG~~v~G 84 (95)
T 1ufw_A 9 SFQGPLDATVVVNLQSPTLEEKNEFPEDLRTELMQTLGSYGTIVLVRINQGQ---MLVTFADSHSALSVLD-VDGMKVKG 84 (95)
T ss_dssp CCCCCTTCEEEEEESSCCHHHHHSCCHHHHHHHHHHHHHHSCCSEEEEETTE---EEEECSCSHHHHHHHH-GGGSEETT
T ss_pred eecCCCCCeEEEEecCCcccccccCCHHHHHHHHHHHHHCCCEEEEEEecCc---EEEEEcChHHHHHHHh-cCCeeeCC
Confidence 345678888999877642 333 6688899999999999999877 9999999999999998 99999999
Q ss_pred CCCeEEEec
Q 026902 221 QNPMAITFA 229 (231)
Q Consensus 221 ~~~l~V~~a 229 (231)
+.|+|.+.
T Consensus 85 -r~L~V~~k 92 (95)
T 1ufw_A 85 -RAVKISGP 92 (95)
T ss_dssp -EEEEEECC
T ss_pred -eEEEEecc
Confidence 99999875
No 379
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=99.08 E-value=6.1e-10 Score=86.02 Aligned_cols=83 Identities=11% Similarity=0.199 Sum_probs=66.0
Q ss_pred CCCCCEEEEeCCCCc-cCHHHHHHHHHHhhccCCCeEEEEEec-------CCCccceEEEEEcCHHHHHHHHHHhCCcee
Q 026902 6 IPPNQTIYIKNLNEK-IKKEELKRSLYCLFSQYGRIFDVVALK-------TPKLRGQAWVVFSEVTAASNAVRQMQNFPF 77 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~-~te~~l~~~l~~~f~~~g~v~~v~~~~-------~~~~~g~afV~f~~~e~A~~a~~~l~g~~~ 77 (231)
...++.+.+.|+-.. --.+++.+.|++.|++||.|.++.+.+ ++.++|++||+|.+.++|.+|++.|||..|
T Consensus 121 ~~~s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~ 200 (222)
T 3dxb_A 121 AMESTVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWF 200 (222)
T ss_dssp CCBCSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBS
T ss_pred ccccccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceE
Confidence 344566666665432 222344455669999999999999975 248999999999999999999999999999
Q ss_pred CCeeeEEEecc
Q 026902 78 YDKPMRIQYAK 88 (231)
Q Consensus 78 ~g~~l~v~~~~ 88 (231)
.||.|.+.|..
T Consensus 201 ~gr~i~~~~~~ 211 (222)
T 3dxb_A 201 AGRKVVAEVYD 211 (222)
T ss_dssp SSSBCEEEECC
T ss_pred CCeEEEEEEcC
Confidence 99999999975
No 380
>3dxb_A Thioredoxin N-terminally fused to PUF60(UHM); splicing, FBP interacting repressor, RRM, electron TRAN redox-active center, transport; 2.20A {Escherichia coli O157}
Probab=98.94 E-value=2.1e-09 Score=82.99 Aligned_cols=73 Identities=15% Similarity=0.199 Sum_probs=60.8
Q ss_pred CCEEEecCCC-----CCCCHHHHHHHhccCCCeeEEEEeeC---------CCcEEEEEecCHHHHHHHHHHhcCCccCCC
Q 026902 156 NNILFIQNLP-----HETTSSMLEMLFQQYPGFKEVRMIEA---------KPGIAFVEFEDDVQSSMAMQALQGFKITPQ 221 (231)
Q Consensus 156 ~~~l~v~nlp-----~~~t~~~l~~~f~~~g~v~~v~~~~~---------~~g~afV~f~~~~~A~~A~~~lng~~i~~~ 221 (231)
...+.+.|+- ..-.+++|.+.|++||.|.++.++++ .+|++||+|.+.++|.+|+..|||+.++|
T Consensus 124 s~v~~l~n~v~~~e~~~e~~~dl~~e~~~~G~v~~~~v~~~~~~~~~~~~~~G~~fv~f~~~~~a~~a~~~l~gr~~~g- 202 (222)
T 3dxb_A 124 STVMVLRNMVDPKDIDDDLEGEVTEECGKFGAVNRVIIYQEKQGEEEDAEIIVKIFVEFSIASETHKAIQALNGRWFAG- 202 (222)
T ss_dssp CSEEEEESSCCGGGCCTTHHHHHHHHHTTTSCEEEEEEEEEECCSSTTCCEEEEEEEEESSHHHHHHHHHHHTTCBSSS-
T ss_pred cccchhhcCCCHHHHHHHHHHHHHHHHHccCCeEEEEEecCCCCcccCcCceeEEEEEECCHHHHHHHHHHhcCceECC-
Confidence 3445555542 23457899999999999999999842 25899999999999999999999999999
Q ss_pred CCeEEEec
Q 026902 222 NPMAITFA 229 (231)
Q Consensus 222 ~~l~V~~a 229 (231)
|.|.|.|.
T Consensus 203 r~i~~~~~ 210 (222)
T 3dxb_A 203 RKVVAEVY 210 (222)
T ss_dssp SBCEEEEC
T ss_pred eEEEEEEc
Confidence 99999986
No 381
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.80 E-value=2.5e-08 Score=66.39 Aligned_cols=71 Identities=11% Similarity=0.206 Sum_probs=65.5
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccC-----CCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQY-----PGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~-----g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
..++|-+-|||..+++.-|+.+++.+ |.+..+.+.++-. =|+|+|.+...|.+|.-.|||.+|.+ ++|++.
T Consensus 20 ~~rtiaL~~ipDtvndarIr~lve~~~~i~~g~i~KI~L~pDH~-GAivef~d~~~AgKasLaL~G~ef~g-r~Lr~g 95 (117)
T 2l9w_A 20 LETLICLFPLSDKVSPSLICQFLQEEIHINEKDIRKILLVSDFN-GAIIIFRDSKFAAKMLMILNGSQFQG-KVIRSG 95 (117)
T ss_dssp TTSCEEEECCCTTCCHHHHHHHHHHHTCCCTTTCSEEEEETTTT-EEEEECSCHHHHHHHHHHHSSEEETT-EEEEEE
T ss_pred CCcEEEEecCCCCCCHHHHHHHHhhhhccCccceeEEEEecCCC-ceEEEEccchhhHHHHhhcCCeeecC-eEEEec
Confidence 45678899999999999999999999 9999999999874 49999999999999999999999998 999985
No 382
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=98.59 E-value=3.8e-07 Score=60.78 Aligned_cols=74 Identities=14% Similarity=0.148 Sum_probs=65.9
Q ss_pred CCCCEEEEeCCCCccCHHHHHHHHHHhhccC-----CCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 7 PPNQTIYIKNLNEKIKKEELKRSLYCLFSQY-----GRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~-----g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
...++|-+-|||-+++...|+ .+.+.+ |.+..|.+. ..-+-|+|+|.+...|-+|.=+|+|..|.||+
T Consensus 19 ~~~rtiaL~~ipDtvndarIr----~lve~~~~i~~g~i~KI~L~---pDH~GAivef~d~~~AgKasLaL~G~ef~gr~ 91 (117)
T 2l9w_A 19 ELETLICLFPLSDKVSPSLIC----QFLQEEIHINEKDIRKILLV---SDFNGAIIIFRDSKFAAKMLMILNGSQFQGKV 91 (117)
T ss_dssp TTTSCEEEECCCTTCCHHHHH----HHHHHHTCCCTTTCSEEEEE---TTTTEEEEECSCHHHHHHHHHHHSSEEETTEE
T ss_pred cCCcEEEEecCCCCCCHHHHH----HHHhhhhccCccceeEEEEe---cCCCceEEEEccchhhHHHHhhcCCeeecCeE
Confidence 458999999999999999999 999999 999999884 34567999999999999999889999999999
Q ss_pred eEEEec
Q 026902 82 MRIQYA 87 (231)
Q Consensus 82 l~v~~~ 87 (231)
|++.-.
T Consensus 92 Lr~gTv 97 (117)
T 2l9w_A 92 IRSGTI 97 (117)
T ss_dssp EEEECH
T ss_pred EEecCH
Confidence 998543
No 383
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.50 E-value=4.2e-07 Score=60.30 Aligned_cols=80 Identities=18% Similarity=0.287 Sum_probs=68.5
Q ss_pred CCCCEEEEeCCCCcc-CHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCeeeEEE
Q 026902 7 PPNQTIYIKNLNEKI-KKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKPMRIQ 85 (231)
Q Consensus 7 ~~~~~v~v~nLp~~~-te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~l~v~ 85 (231)
.-.++|+|.||+.++ ..++++..+..+|..|+++......++ -.-.-|.|.++++|.+|...||+..|.|+.++|-
T Consensus 3 ~~pntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkS---FRRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~Y 79 (104)
T 1wey_A 3 SGSSGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKS---FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLY 79 (104)
T ss_dssp SCCCEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETT---TTEEEEECSSTTHHHHHHHTSTTSEETTEECEEE
T ss_pred CCCceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCc---ceEEEEEeCChHHHHHHHHHhccceecCceeEEE
Confidence 346789999999875 888887778899999999888777544 3346899999999999999999999999999999
Q ss_pred eccC
Q 026902 86 YAKS 89 (231)
Q Consensus 86 ~~~~ 89 (231)
++++
T Consensus 80 Fgq~ 83 (104)
T 1wey_A 80 FAQT 83 (104)
T ss_dssp CCCC
T ss_pred ecCC
Confidence 9873
No 384
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.42 E-value=5.5e-06 Score=54.72 Aligned_cols=74 Identities=14% Similarity=0.188 Sum_probs=60.1
Q ss_pred CCCCCCCEEEEeCCCCccCHHHHHHHHHHhhcc-----CCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeC
Q 026902 4 GDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQ-----YGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFY 78 (231)
Q Consensus 4 ~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~-----~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~ 78 (231)
......++|.|.|||..++++-|+ -.|+. -|+|..+... .+-|+|+|.+.+.|++.++ -....|.
T Consensus 3 ~~~~~~~~I~V~~lPp~~~~e~L~----LYFEn~rrsGGG~V~~v~~~-----~~~AvItF~d~~va~rVL~-k~~H~L~ 72 (104)
T 2dhx_A 3 SGSSGGVAVEVRGLPPAVPDELLT----LYFENRRRSGGGPVLSWQRL-----GCGGVLTFREPADAERVLA-QADHELH 72 (104)
T ss_dssp CSCCCCCEEEEESCCTTSCHHHHH----HHHHCTTTTCCCCEEEEEEE-----TTEEEEEESSHHHHHHHHT-CSCCBSS
T ss_pred CCccCccEEEEECCCCCCChhHhe----EEEeCCCcCCCceeeEEEEc-----CCcEEEEEcChHHHHHHhc-CCcceec
Confidence 345678999999999999999888 66654 4688888763 2789999999999999998 3467888
Q ss_pred CeeeEEEec
Q 026902 79 DKPMRIQYA 87 (231)
Q Consensus 79 g~~l~v~~~ 87 (231)
+.+|.|...
T Consensus 73 ~~~LsV~P~ 81 (104)
T 2dhx_A 73 GAQLSLRPA 81 (104)
T ss_dssp SSBCEEEEC
T ss_pred CeEEEEEcC
Confidence 899999664
No 385
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.30 E-value=9.2e-07 Score=58.68 Aligned_cols=72 Identities=15% Similarity=0.192 Sum_probs=61.2
Q ss_pred CEEEecCCCCCC-C----HHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 157 NILFIQNLPHET-T----SSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 157 ~~l~v~nlp~~~-t----~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
++|++.||+..+ . .+.+..+|..|+++......+.=+ -..|.|.++++|.+|-..||+..|+| +.++|-||+
T Consensus 6 ntLiitnl~~~vF~~~~lk~~~e~Lf~~~~~~~tF~~lkSFR-Rirv~F~~~~~A~~AR~~Lh~~~f~g-~~~r~YFgq 82 (104)
T 1wey_A 6 SGLIACVANDDVFSESETRAKFESLFRTYDKDTTFQYFKSFK-RVRINFSNPLSAADARLRLHKTEFLG-KEMKLYFAQ 82 (104)
T ss_dssp CEEEEECCCGGGGSTTTHHHHHHHHHHTTCSSCEEEEETTTT-EEEEECSSTTHHHHHHHTSTTSEETT-EECEEECCC
T ss_pred ceEEEecCCHHHcCCHHHHHHHHHHHHhhCcCcceeecCcce-EEEEEeCChHHHHHHHHHhccceecC-ceeEEEecC
Confidence 469999998754 3 356788999999998877777632 38999999999999999999999999 999999986
No 386
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.93 E-value=7.1e-05 Score=48.73 Aligned_cols=63 Identities=16% Similarity=0.292 Sum_probs=55.8
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-------CcEEEEEecCHHHHHHHHHHhcCCccCC
Q 026902 158 ILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-------PGIAFVEFEDDVQSSMAMQALQGFKITP 220 (231)
Q Consensus 158 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-------~g~afV~f~~~~~A~~A~~~lng~~i~~ 220 (231)
.|.|++||+.+|++++.+.++..+.+.....+.++ .+-|+|.|.+.++...-...++|+.|.+
T Consensus 3 KvVIRrLPP~LteeeF~~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 3 KVVIRRLPPTLTKEQLQEHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp EEEEEEECTTCCHHHHHHHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred EEEEeCCCCCCCHHHHHHHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 58899999999999999999999888777777653 3579999999999999999999998865
No 387
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=97.91 E-value=8e-05 Score=48.48 Aligned_cols=66 Identities=15% Similarity=0.242 Sum_probs=54.2
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC-----CCccceEEEEEcCHHHHHHHHHHhCCceeCC
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT-----PKLRGQAWVVFSEVTAASNAVRQMQNFPFYD 79 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~-----~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g 79 (231)
+.|.|++||..+||+++. +.++.+..+........ ...-.-|||.|.+.+++....+.++|..|.+
T Consensus 2 ~KvVIRrLPP~LteeeF~----~~l~~~~~~d~~~fv~G~~s~~~~~~SRaYi~f~~~e~v~~f~~~~~g~~F~D 72 (91)
T 1uw4_A 2 SKVVIRRLPPTLTKEQLQ----EHLQPMPEHDYFEFFSNDTSLYPHMYARAYINFKNQEDIILFRDRFDGYVFLD 72 (91)
T ss_dssp CEEEEEEECTTCCHHHHH----HHHCSCCCEEEEEEEESCCSSTTCCCEEEEEEESSSHHHHHHHHHHTTCEEEC
T ss_pred cEEEEeCCCCCCCHHHHH----HHhcCcccceEEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHhCCcEEEc
Confidence 478999999999999998 77777777766655541 2344689999999999999999999988864
No 388
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.85 E-value=7.3e-05 Score=48.76 Aligned_cols=58 Identities=22% Similarity=0.368 Sum_probs=46.7
Q ss_pred CCCCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc
Q 026902 153 AAPNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214 (231)
Q Consensus 153 ~~~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~ln 214 (231)
....+.++| +.|..+...||.++|+.||.|.=-. +.+. .|||.|.+++.|..|++.+.
T Consensus 13 p~r~HVf~l-~FP~ewKt~DI~~lFs~fggv~I~W-idDT--sAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 13 PKRDHVLHV-TFPKEWKTSDLYQLFSAFGNIQISW-IDDT--SAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CCCCSEEEE-ECCTTCCHHHHHHHHTTTCSCCCEE-EETT--EEEEECSCHHHHHHHHHHHH
T ss_pred CCCCeEEEE-eCChhhhhHHHHHHhhccCCEEEEE-EcCC--eEEEEecCHHHHHHHHHhcc
Confidence 345567777 9999999999999999999654333 3333 69999999999999999874
No 389
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.76 E-value=9.6e-05 Score=50.38 Aligned_cols=76 Identities=14% Similarity=0.147 Sum_probs=59.2
Q ss_pred CCCCCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCC-ee
Q 026902 3 TGDIPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYD-KP 81 (231)
Q Consensus 3 ~~~~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g-~~ 81 (231)
+.+....+-|-|-+.|......-| ..|++||.|.+... .....+-.|.|.+..+|++|+. .||..+.| -.
T Consensus 18 ~~~~~~~~wVtVFGFp~~~~~~VL-----~~F~~~G~Iv~~~~---~~~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~m 88 (119)
T 1wwh_A 18 SEDHLDDTWVTVFGFPQASASYIL-----LQFAQYGNILKHVM---SNTGNWMHIRYQSKLQARKALS-KDGRIFGESIM 88 (119)
T ss_dssp ---CGGGGEEEEECCCGGGHHHHH-----HHHHTTSCEEEEEE---CSSSSEEEEEESSHHHHHHHHT-TTTCEETTTEE
T ss_pred CCCCCCCCEEEEECCCHHHHHHHH-----HHHHhhCcEEEecc---CCCCCeEEEEeCCHHHHHHHHH-hCCeEecCCEE
Confidence 344556788999999998654444 88999999998876 3457899999999999999999 79999985 55
Q ss_pred eEEEec
Q 026902 82 MRIQYA 87 (231)
Q Consensus 82 l~v~~~ 87 (231)
|=|.+.
T Consensus 89 IGV~p~ 94 (119)
T 1wwh_A 89 IGVKPC 94 (119)
T ss_dssp CEEEEC
T ss_pred EEEEEC
Confidence 666554
No 390
>1whv_A Poly(A)-specific ribonuclease; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, PARN, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2rok_A*
Probab=97.54 E-value=0.00029 Score=45.96 Aligned_cols=55 Identities=22% Similarity=0.268 Sum_probs=45.7
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhC
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQ 73 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~ 73 (231)
...++| ++|......||. ++|+.||.|.--.+ .---|||.|.+++.|..|+..+.
T Consensus 16 ~HVf~l-~FP~ewKt~DI~----~lFs~fggv~I~Wi-----dDTsAlvvf~~~~~a~~al~~i~ 70 (100)
T 1whv_A 16 DHVLHV-TFPKEWKTSDLY----QLFSAFGNIQISWI-----DDTSAFVSLSQPEQVQIAVNTSK 70 (100)
T ss_dssp CSEEEE-ECCTTCCHHHHH----HHHTTTCSCCCEEE-----ETTEEEEECSCHHHHHHHHHHHH
T ss_pred CeEEEE-eCChhhhhHHHH----HHhhccCCEEEEEE-----cCCeEEEEecCHHHHHHHHHhcc
Confidence 455666 999999999999 99999998764444 34579999999999999999763
No 391
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=97.53 E-value=0.00045 Score=47.05 Aligned_cols=70 Identities=13% Similarity=0.243 Sum_probs=55.6
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
...-|.|-+.|... -+.+..+|++||.|.+..... ...+-.|.|.++.+|++||. .||..|+++--|-|.
T Consensus 23 ~~~wVtVFGFp~~~-~~~VL~~F~~~G~Iv~~~~~~-~~NWihI~Y~s~~~A~rAL~-kNG~ii~g~~mIGV~ 92 (119)
T 1wwh_A 23 DDTWVTVFGFPQAS-ASYILLQFAQYGNILKHVMSN-TGNWMHIRYQSKLQARKALS-KDGRIFGESIMIGVK 92 (119)
T ss_dssp GGGEEEEECCCGGG-HHHHHHHHHTTSCEEEEEECS-SSSEEEEEESSHHHHHHHHT-TTTCEETTTEECEEE
T ss_pred CCCEEEEECCCHHH-HHHHHHHHHhhCcEEEeccCC-CCCeEEEEeCCHHHHHHHHH-hCCeEecCCEEEEEE
Confidence 34568888998775 677778899999999888743 34799999999999999996 699999863444443
No 392
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.53 E-value=0.0014 Score=43.27 Aligned_cols=68 Identities=7% Similarity=0.175 Sum_probs=55.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhcc-----CCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEE
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQ-----YPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAIT 227 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~-----~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~ 227 (231)
...+|.|.|||..+.++-|.-+|+. =|.|..+.... +.|+|+|.+...|++.+.. ..+.+++ .+|.|.
T Consensus 7 ~~~~I~V~~lPp~~~~e~L~LYFEn~rrsGGG~V~~v~~~~---~~AvItF~d~~va~rVL~k-~~H~L~~-~~LsV~ 79 (104)
T 2dhx_A 7 GGVAVEVRGLPPAVPDELLTLYFENRRRSGGGPVLSWQRLG---CGGVLTFREPADAERVLAQ-ADHELHG-AQLSLR 79 (104)
T ss_dssp CCCEEEEESCCTTSCHHHHHHHHHCTTTTCCCCEEEEEEET---TEEEEEESSHHHHHHHHTC-SCCBSSS-SBCEEE
T ss_pred CccEEEEECCCCCCChhHheEEEeCCCcCCCceeeEEEEcC---CcEEEEEcChHHHHHHhcC-CcceecC-eEEEEE
Confidence 5677999999999999999999986 25788888766 5699999999999999863 2567776 777764
No 393
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.41 E-value=0.00038 Score=45.52 Aligned_cols=54 Identities=24% Similarity=0.431 Sum_probs=44.3
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhc
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQ 214 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~ln 214 (231)
+.++| +.|..+...||.++|+.||.|. |.-+.+. .|||.|.+++.|..|++.+.
T Consensus 7 HV~~l-~FP~ewKt~Di~~lFs~fggv~-I~WidDT--sAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLYQLFSAFGNIQ-ISWIDDT--SAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHHHHTTTSEEEE-EEEEETT--EEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHHHHHhccCCEE-EEEEcCC--eEEEEecCHHHHHHHHHhcc
Confidence 45677 9999999999999999999543 3333433 69999999999999999875
No 394
>3ctr_A Poly(A)-specific ribonuclease PARN; protein-RNA-complex, M7G-CAP, M7GTP, RNA recognition motif, RRM, cytoplasm, exonuclease, hydrolase, magnesium; HET: MGP; 2.10A {Homo sapiens}
Probab=97.37 E-value=0.00038 Score=45.53 Aligned_cols=54 Identities=22% Similarity=0.258 Sum_probs=45.0
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhC
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQ 73 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~ 73 (231)
..++| ++|......||. ++|+.||.|.--.+ .-.-|||.|.+++.|..|+..+.
T Consensus 7 HV~~l-~FP~ewKt~Di~----~lFs~fggv~I~Wi-----dDTsAlvvf~~~~~a~~al~~i~ 60 (101)
T 3ctr_A 7 HVLHV-TFPKEWKTSDLY----QLFSAFGNIQISWI-----DDTSAFVSLSQPEQVKIAVNTSK 60 (101)
T ss_dssp EEEEE-ECCTTCCHHHHH----HHTTTSEEEEEEEE-----ETTEEEEEEEEECHHHHHHHHHT
T ss_pred eEEEE-eCChhhhhHHHH----HHHhccCCEEEEEE-----cCCeEEEEecCHHHHHHHHHhcc
Confidence 45666 999999999999 99999997654444 34579999999999999999764
No 395
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.22 E-value=0.00073 Score=44.26 Aligned_cols=68 Identities=16% Similarity=0.219 Sum_probs=51.3
Q ss_pred CCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecC-----CCccceEEEEEcCHHHHHHHHHHhCCceeCC
Q 026902 8 PNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKT-----PKLRGQAWVVFSEVTAASNAVRQMQNFPFYD 79 (231)
Q Consensus 8 ~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~-----~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g 79 (231)
.+-.|.|+.||..+||+++. +.++.+-.+........ ...-.-|||.|.+.++.....+..+|..|.+
T Consensus 8 ~~~KvVIRrLPP~Ltee~F~----~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 8 HSHMVVIRRLPPGLTKEQLE----EQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCCCEEEECCCSCSCHHHHT----TTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred cceeEEEeCCCCCCCHHHHH----HHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 35679999999999999988 66666544433333221 2233579999999999999999999988864
No 396
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=97.12 E-value=0.00057 Score=47.21 Aligned_cols=73 Identities=12% Similarity=0.204 Sum_probs=55.5
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEE-EEecC-----------C-----CccceEEEEEcCHHHHHHHHHH
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV-VALKT-----------P-----KLRGQAWVVFSEVTAASNAVRQ 71 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v-~~~~~-----------~-----~~~g~afV~f~~~e~A~~a~~~ 71 (231)
...|.|-+.|......-| +.|++||.|.+- ...++ . ...++-.|+|.+..+|.+|+.
T Consensus 7 e~~VtVFGFp~~~~~~VI-----~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~- 80 (132)
T 3p3d_A 7 ELAILVFGYPETMANQVI-----AYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL- 80 (132)
T ss_dssp -CEEEEECCCGGGHHHHH-----HHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-
T ss_pred ceEEEEEecCHHHHHHHH-----HHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-
Confidence 456777789888777666 789999998762 11110 0 135788999999999999999
Q ss_pred hCCceeCCeeeEEEec
Q 026902 72 MQNFPFYDKPMRIQYA 87 (231)
Q Consensus 72 l~g~~~~g~~l~v~~~ 87 (231)
.||..|.|..|=|.+.
T Consensus 81 ~NG~ii~G~mIGV~Py 96 (132)
T 3p3d_A 81 ENGAVFNGVLLGVIPY 96 (132)
T ss_dssp TTTCEETTEECEEEEC
T ss_pred hCCeEeCcEEEEEEEC
Confidence 8999999988877665
No 397
>2l08_A Regulator of nonsense transcripts 3A; NESG, nonsense regulator, structural genomics, PSI-2, protei structure initiative; NMR {Homo sapiens}
Probab=97.11 E-value=0.00067 Score=44.42 Aligned_cols=64 Identities=17% Similarity=0.318 Sum_probs=51.2
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCC-------CcEEEEEecCHHHHHHHHHHhcCCccCC
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAK-------PGIAFVEFEDDVQSSMAMQALQGFKITP 220 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~-------~g~afV~f~~~~~A~~A~~~lng~~i~~ 220 (231)
-.|.|+.||+.+|++++.+.++..-.+....++.++ .+-|+|.|.+.++...-....+|..|-+
T Consensus 10 ~KvVIRrLPP~Ltee~F~~~l~~~~~~d~~~fv~G~~s~~~~~~SRAYI~F~~~edv~~F~~~f~g~~F~D 80 (97)
T 2l08_A 10 HMVVIRRLPPGLTKEQLEEQLRPLPAHDYFEFFAADLSLYPHLYSRAYINFRNPDDILLFRDRFDGYIFLD 80 (97)
T ss_dssp CCEEEECCCSCSCHHHHTTTTSCCSSEEECCCCCCCSSSCCSCCCCCEEEESCHHHHHHHHHHSTTEEEEC
T ss_pred eeEEEeCCCCCCCHHHHHHHhCCcCccceEEEeCCccCCCCCcceEEEEEeCCHHHHHHHHHHcCCcEEEe
Confidence 458999999999999999888876665444444432 2469999999999999999999988755
No 398
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.54 E-value=0.0014 Score=55.33 Aligned_cols=56 Identities=14% Similarity=0.148 Sum_probs=43.2
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHH
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQ 211 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~ 211 (231)
..++|+|. .|...++.+|.+.|++||+|.++.+..+..-||.|+|.+.+++..++.
T Consensus 52 a~rsv~v~-~~~~~~~~~l~~y~~~~g~i~~~~~~~~~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 52 AQRTVLIH-CPEKISENKFLKYLSQFGPINNHFFYESFGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HHTEEEEE-ECCC---CHHHHHHGGGSCCCCEEEECSSSEEEEEECC---CCHHHHS
T ss_pred hcceEEEE-cCCCCCHHHHHHHHHhcCCcceEEEEccCCeEEEEEeCCHHHHHHHHh
Confidence 34679996 799999999999999999999999988776799999999998876654
No 399
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=96.16 E-value=0.0038 Score=43.08 Aligned_cols=68 Identities=9% Similarity=0.191 Sum_probs=50.3
Q ss_pred EEEecCCCCCCCHHHHHHHhccCCCeeE-EEEe----------------e--CCCcEEEEEecCHHHHHHHHHHhcCCcc
Q 026902 158 ILFIQNLPHETTSSMLEMLFQQYPGFKE-VRMI----------------E--AKPGIAFVEFEDDVQSSMAMQALQGFKI 218 (231)
Q Consensus 158 ~l~v~nlp~~~t~~~l~~~f~~~g~v~~-v~~~----------------~--~~~g~afV~f~~~~~A~~A~~~lng~~i 218 (231)
-|.|-+.|... ...+.+.|++||.|.+ +... + ...++.-|+|.++.+|.+|++ -||..|
T Consensus 9 ~VtVFGFp~~~-~~~VI~~Fs~~G~IlE~~~~~~~~~~~~~~~~~~k~yP~f~g~NWikItYds~~~A~rAL~-~NG~ii 86 (132)
T 3p3d_A 9 AILVFGYPETM-ANQVIAYFQEFGTILEDFEVLRKPQAMTVGLQDRQFVPIFSGNSWTKITYDNPASAVDALL-ENGAVF 86 (132)
T ss_dssp EEEEECCCGGG-HHHHHHHHGGGSCBCSCCGGGCCC-----------CCCCCEETTEEEEEBSSHHHHHHHHT-TTTCEE
T ss_pred EEEEEecCHHH-HHHHHHHHHhhceEeeeccccccccccccccccccccCccCCCcEEEEEcCCHHHHHHHHH-hCCeEe
Confidence 36777887554 4566678999999976 2111 1 123689999999999999996 789999
Q ss_pred CCCCCeEEEe
Q 026902 219 TPQNPMAITF 228 (231)
Q Consensus 219 ~~~~~l~V~~ 228 (231)
+| .-|.|..
T Consensus 87 ~G-~mIGV~P 95 (132)
T 3p3d_A 87 NG-VLLGVIP 95 (132)
T ss_dssp TT-EECEEEE
T ss_pred Cc-EEEEEEE
Confidence 98 7776654
No 400
>3pq1_A Poly(A) RNA polymerase; nucleotidyl transferase, RNP-type RNA binding domain, poly(A polymerase, mitochondria, transferase; 3.10A {Homo sapiens}
Probab=96.03 E-value=0.0033 Score=53.18 Aligned_cols=55 Identities=22% Similarity=0.262 Sum_probs=41.7
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHH
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVR 70 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~ 70 (231)
.|.|+|. .|...++.+|. +.|++||+|.++.+.++ ..-||.|+|.+.+++..++.
T Consensus 53 ~rsv~v~-~~~~~~~~~l~----~y~~~~g~i~~~~~~~~--~g~~~~vef~~~~~~~~~~~ 107 (464)
T 3pq1_A 53 QRTVLIH-CPEKISENKFL----KYLSQFGPINNHFFYES--FGLYAVVEFCQKESIGSLQN 107 (464)
T ss_dssp HTEEEEE-ECCC---CHHH----HHHGGGSCCCCEEEECS--SSEEEEEECC---CCHHHHS
T ss_pred cceEEEE-cCCCCCHHHHH----HHHHhcCCcceEEEEcc--CCeEEEEEeCCHHHHHHHHh
Confidence 4889997 79999999988 99999999999988643 34799999999999997665
No 401
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=93.36 E-value=0.22 Score=42.72 Aligned_cols=55 Identities=22% Similarity=0.265 Sum_probs=45.3
Q ss_pred CCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhC
Q 026902 9 NQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQ 73 (231)
Q Consensus 9 ~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~ 73 (231)
...++|+ +|..+...+|. ++|+.||.|.-..+ +...|||.|.+.+.|..++.++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~----~~fs~fg~v~V~wi-----ddt~a~V~~~~~~~a~~~l~~~~ 494 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLY----QLFSAFGNIQISWI-----DDTSAFVSLSQPEQVQIAVNTSK 494 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHH----HHGGGGCCCEEEEC-----SSSEEEEECSCHHHHHHHHHHHT
T ss_pred CcEEEEe-CCCCCCHHHHH----HHHHhcCCEEEEEE-----cCCeEEEEECCHHHHHHHHHHHH
Confidence 4566666 99999999998 99999997754444 45679999999999999999885
No 402
>3d45_A Poly(A)-specific ribonuclease PARN; CAP analogue, exonuclease, hydrolase, magnesium, metal nonsense-mediated mRNA decay, nucleus; HET: 7MG GDP; 3.00A {Mus musculus}
Probab=91.05 E-value=0.67 Score=39.78 Aligned_cols=56 Identities=23% Similarity=0.401 Sum_probs=44.3
Q ss_pred CCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcC
Q 026902 156 NNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQG 215 (231)
Q Consensus 156 ~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng 215 (231)
.+.++++ .|..+...+|.+.|+.||.+. |.-+. . ..|||.|.+++.|..++..++.
T Consensus 440 ~~vl~v~-f~~~~~~~~i~~~fs~fg~v~-V~wid-d-t~a~V~~~~~~~a~~~l~~~~~ 495 (507)
T 3d45_A 440 DHVLHVT-FPKEWKTSDLYQLFSAFGNIQ-ISWID-D-TSAFVSLSQPEQVQIAVNTSKY 495 (507)
T ss_dssp GGEEEEE-CCTTCCHHHHHHHGGGGCCCE-EEECS-S-SEEEEECSCHHHHHHHHHHHTT
T ss_pred CcEEEEe-CCCCCCHHHHHHHHHhcCCEE-EEEEc-C-CeEEEEECCHHHHHHHHHHHHh
Confidence 3466775 899999999999999999653 33222 2 4699999999999999998853
No 403
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=80.83 E-value=8.4 Score=24.38 Aligned_cols=59 Identities=20% Similarity=0.291 Sum_probs=48.3
Q ss_pred CCCEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCC
Q 026902 155 PNNILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGF 216 (231)
Q Consensus 155 ~~~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~ 216 (231)
.++.|-|-|+|..+...++.-.....|.--.|..+. |.|.|.|.+.++...|++.|-++
T Consensus 11 qnclikiinipqgtlkaevvlavrhlgyefycdyid---gqamirfqnsdeqrlaiqkllnh 69 (129)
T 4eyt_A 11 QNCLIKIINIPQGTLKAEVVLAVRHLGYEFYCDYID---GQAMIRFQNSDEQRLAIQKLLNH 69 (129)
T ss_dssp CSCEEEEECCCTTCCHHHHHHHHHTTCCCEEEEECS---SCEEEEESSHHHHHHHHHHHEET
T ss_pred hCcEEEEEecCCCceeeeeEEeehhcCeeEeeeeec---CeeEEEecCChHHHHHHHHHHhc
Confidence 456677889999999998888788888877777765 45999999999999999887543
No 404
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=75.78 E-value=8.1 Score=23.34 Aligned_cols=68 Identities=10% Similarity=0.212 Sum_probs=42.3
Q ss_pred EEEecCCC--CCCCHHHHHHHhccCCCe-----eEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCccCCCCCeEEEecc
Q 026902 158 ILFIQNLP--HETTSSMLEMLFQQYPGF-----KEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFKITPQNPMAITFAK 230 (231)
Q Consensus 158 ~l~v~nlp--~~~t~~~l~~~f~~~g~v-----~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~i~~~~~l~V~~a~ 230 (231)
+++| |+. ..+..-+|...+..-+.+ -.+.+.. .+.||+-.. ..|..++..|++..+.+ +.++|+.++
T Consensus 2 ~~~i-~~Grk~~~~p~~ivg~i~~~~gi~~~~IG~I~i~d---~~s~v~v~~-~~~~~~~~~l~~~~i~g-~~~~v~~~~ 75 (76)
T 2g0c_A 2 KLYF-NGGKKKKIRAVDFVGTIAKIDGVSADDIGIITIMD---NASYVEILN-GKGPHVLKVMKNTTVKG-KQLKVNKAN 75 (76)
T ss_dssp EEEE-SCCCC----CHHHHHHHHTSTTCCGGGEEEEEECS---SCEEEEECT-TCHHHHHHHHTTCCC----CCCEEECC
T ss_pred EEEE-eCCCccCCCHHHHHHHHHHccCCChhhccEEEEeC---CcEEEEECH-HHHHHHHHHhccccCcC-ceEEEEECC
Confidence 3556 333 346777888887755543 4455532 368888763 45778999999999998 999999887
Q ss_pred C
Q 026902 231 K 231 (231)
Q Consensus 231 ~ 231 (231)
+
T Consensus 76 ~ 76 (76)
T 2g0c_A 76 K 76 (76)
T ss_dssp -
T ss_pred C
Confidence 5
No 405
>1xn9_A 30S ribosomal protein S24E; beta+alpha, GFT structural genomics, protein structure initiative, PSI, NESG, MAR11; NMR {Methanosarcina mazei} SCOP: d.12.1.3
Probab=62.96 E-value=23 Score=23.03 Aligned_cols=50 Identities=8% Similarity=0.209 Sum_probs=35.4
Q ss_pred CccCHHHHHHHHHHhhccCCCeEEEEEec----CCCccceEEEEEcCHHHHHHHH
Q 026902 19 EKIKKEELKRSLYCLFSQYGRIFDVVALK----TPKLRGQAWVVFSEVTAASNAV 69 (231)
Q Consensus 19 ~~~te~~l~~~l~~~f~~~g~v~~v~~~~----~~~~~g~afV~f~~~e~A~~a~ 69 (231)
.+.+..+|+..|..++..-..+.-|.=.+ .|.+.|||.| |.+.+.|++.-
T Consensus 28 ~tpsk~eirekLAk~~~~~~~~Vvv~~~~t~fG~gkstG~a~I-Yds~e~akk~E 81 (101)
T 1xn9_A 28 STPSRNDVRNKLAAMLNAPLELLVIQRIKTEYGMQESKGYAKL-YEDADRMKQVE 81 (101)
T ss_dssp SCCCHHHHHHHHHHHTTCCTTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHhhC
Confidence 56788999988888888766555554444 3778888866 56777776544
No 406
>1ywx_A 30S ribosomal protein S24E; GFT MRR16, nesgc, structural genomics, PSI, protein structure initiative; NMR {Methanococcus maripaludis} SCOP: d.12.1.3
Probab=60.16 E-value=27 Score=22.71 Aligned_cols=48 Identities=15% Similarity=0.230 Sum_probs=34.4
Q ss_pred CccCHHHHHHHHHHhhccCCCeEEEEEec----CCCccceEEEEEcCHHHHHH
Q 026902 19 EKIKKEELKRSLYCLFSQYGRIFDVVALK----TPKLRGQAWVVFSEVTAASN 67 (231)
Q Consensus 19 ~~~te~~l~~~l~~~f~~~g~v~~v~~~~----~~~~~g~afV~f~~~e~A~~ 67 (231)
.+.+..+|+..|..++..-..+.-|.=.+ .|.+.|||.| |.+.+.|++
T Consensus 28 ~tpsk~eirekLAk~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 79 (102)
T 1ywx_A 28 ATPSIKDVKMKLVAVLNANKQVLVVDTLDQIFGKLEAEGYAKI-YNDEKAMAT 79 (102)
T ss_dssp CCCCHHHHHHHHHHHHTSCSTTEEEEEEEECSSSSEEEEEEEE-CSCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEccEecCCCceEEEEEEE-ECCHHHHHh
Confidence 56788999988888888765555444444 4778888866 567777765
No 407
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=58.97 E-value=24 Score=25.37 Aligned_cols=56 Identities=13% Similarity=0.033 Sum_probs=36.6
Q ss_pred EEEEeCCCCc---------cCHHHHHHHHHHhh--ccCCCeEEEEEecCCCccceEEEEEcCHHHH-HHHHH
Q 026902 11 TIYIKNLNEK---------IKKEELKRSLYCLF--SQYGRIFDVVALKTPKLRGQAWVVFSEVTAA-SNAVR 70 (231)
Q Consensus 11 ~v~v~nLp~~---------~te~~l~~~l~~~f--~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A-~~a~~ 70 (231)
.+.|-|+|.. .+..+|+ +.| ..|.++.-..+....-++|+|.|.|...-.- ..|+.
T Consensus 14 mgIl~N~~t~~~~dg~~~G~s~~~l~----~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 14 KGIVVNIPTTKAQDGRSAGESGSKLR----DEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp EEEEECCCCEECTTSCEECCCSHHHH----HHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred EEEEEeccccccCCCCccCCCHHHHH----HHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 4557788872 3346777 766 8998887544444455889999999765433 33444
No 408
>2v94_A RPS24, 30S ribosomal protein S24E; ribonucleoprotein; 1.90A {Pyrococcus abyssi} SCOP: d.12.1.3
Probab=58.16 E-value=32 Score=22.60 Aligned_cols=48 Identities=10% Similarity=0.112 Sum_probs=33.7
Q ss_pred CccCHHHHHHHHHHhhccCCCeEEEEEec----CCCccceEEEEEcCHHHHHH
Q 026902 19 EKIKKEELKRSLYCLFSQYGRIFDVVALK----TPKLRGQAWVVFSEVTAASN 67 (231)
Q Consensus 19 ~~~te~~l~~~l~~~f~~~g~v~~v~~~~----~~~~~g~afV~f~~~e~A~~ 67 (231)
.+.+..||+..|..++..-..+.-|.=.+ .|.+.|||.| |.+.+.|.+
T Consensus 37 ~tpsk~eirekLA~~~~~~~d~Vvv~~~~T~fG~gkstG~a~I-Yds~e~akk 88 (107)
T 2v94_A 37 PTPSRKDVKGKLVAMLDLNPETTVIQYIRSYFGSYKSKGYAKY-YYDKDRMLY 88 (107)
T ss_dssp CCCCHHHHHHHHHHHHTCCGGGEEEEEEECCTTCSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-ECCHHHHHh
Confidence 46788999988888887754544444444 3778889866 567777765
No 409
>4e8u_A Putative uncharacterized protein T8P19.180; XS domain, RNA binding protein, RNA directed DNA methylation; 2.70A {Arabidopsis thaliana}
Probab=51.63 E-value=38 Score=24.35 Aligned_cols=55 Identities=18% Similarity=0.239 Sum_probs=36.1
Q ss_pred CEEEecCCCC-C--------CCHHHHHHHh--ccCCCeeEEEEee--CCCcEEEEEecCHH-HHHHHHH
Q 026902 157 NILFIQNLPH-E--------TTSSMLEMLF--QQYPGFKEVRMIE--AKPGIAFVEFEDDV-QSSMAMQ 211 (231)
Q Consensus 157 ~~l~v~nlp~-~--------~t~~~l~~~f--~~~g~v~~v~~~~--~~~g~afV~f~~~~-~A~~A~~ 211 (231)
.+.+|-|+|. . .+..+|.+.| +.|.++....+.- +.+|+|.|.|..-- --..|+.
T Consensus 13 wmgIl~N~~t~~~~dg~~~G~s~~~l~~~~~~~~F~p~kv~~l~~~~Gh~g~aIv~F~~dw~Gf~~A~~ 81 (172)
T 4e8u_A 13 WKGIVVNIPTTKAQDGRSAGESGSKLRDEYILRGFNPTRVRPLWNYLGHSGTAIVEFNKDWNGLHNGLL 81 (172)
T ss_dssp CEEEEECCCCEECTTSCEECCCSHHHHHHHHHTTCCCSEEEEEECSSBEEEEEEEECCSSHHHHHHHHH
T ss_pred CEEEEEeccccccCCCCccCCCHHHHHHHHHhcCCCCceeEecccCCCCceeEEEEecCChHHHHHHHH
Confidence 3467778886 2 3457899977 9999977544433 23578999997533 3334443
No 410
>3swz_A Steroid 17-alpha-hydroxylase/17,20 lyase; cytochrome P450, CYP17A1, P450C17, P450 17A1, monooxyg 17A-hydroxylase, heme protein; HET: HEM TOK; 2.40A {Homo sapiens} PDB: 3ruk_A*
Probab=44.77 E-value=20 Score=29.88 Aligned_cols=64 Identities=16% Similarity=0.247 Sum_probs=42.4
Q ss_pred EEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCCceeCCee
Q 026902 11 TIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQNFPFYDKP 81 (231)
Q Consensus 11 ~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g~~~~g~~ 81 (231)
--+|||+..-.....+...+.++..+||+|..+++ | +.-+|...+++.++.++. -++..+.+++
T Consensus 16 lPliGnl~~l~~~~~~~~~~~~~~~kYG~i~~~~~---g---~~~~vvv~~p~~~k~il~-~~~~~f~~rp 79 (494)
T 3swz_A 16 LPLVGSLPFLPRHGHMHNNFFKLQKKYGPIYSVRM---G---TKTTVIVGHHQLAKEVLI-KKGKDFSGRP 79 (494)
T ss_dssp CCEEEEESSCTTSSCHHHHHHHTHHHHCSEEEEEE---T---TEEEEEECSHHHHHHHHT-TTTTTTBBCC
T ss_pred CCeEcchHHhCCCCchhHHHHHHHHHcCCEEEEEe---C---CCCEEEECCHHHHHHHHH-hCcHhhCCCC
Confidence 44789987543222222335588889999988887 4 345677889999999886 3445555544
No 411
>2xzm_P RPS24E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_P
Probab=43.42 E-value=72 Score=22.25 Aligned_cols=48 Identities=19% Similarity=0.143 Sum_probs=33.2
Q ss_pred CccCHHHHHHHHHHhhccCCCeEEEEEec----CCCccceEEEEEcCHHHHHH
Q 026902 19 EKIKKEELKRSLYCLFSQYGRIFDVVALK----TPKLRGQAWVVFSEVTAASN 67 (231)
Q Consensus 19 ~~~te~~l~~~l~~~f~~~g~v~~v~~~~----~~~~~g~afV~f~~~e~A~~ 67 (231)
.+.+..||+..|..++..-..+.-|.=++ .+.+.|||.| |.+.+.|.+
T Consensus 31 aTpSk~eIrekLAkmy~~~~d~VvV~g~rT~fGggkStGfa~I-YDs~e~aKk 82 (149)
T 2xzm_P 31 PTASKEKIREELAKQLKVDARNVVVYGFSTQYGGGKSTGFALV-YDNQQYLLK 82 (149)
T ss_dssp CSCCHHHHHHHHHHHHTCCGGGEEEEEECCCSSSSEEEEEEEE-ESCHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEE-eCCHHHHHh
Confidence 46788999988888887644444444444 3778888887 457777664
No 412
>3fry_A Probable copper-exporting P-type ATPase A; transport protein, metal binding domain, domain SWAP, ATP-BI cell membrane, copper transport; HET: CIT; 2.00A {Archaeoglobus fulgidus}
Probab=38.56 E-value=57 Score=18.78 Aligned_cols=58 Identities=16% Similarity=0.163 Sum_probs=43.4
Q ss_pred CEEEecCCCCCCCHHHHHHHhccCCCeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCCc
Q 026902 157 NILFIQNLPHETTSSMLEMLFQQYPGFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGFK 217 (231)
Q Consensus 157 ~~l~v~nlp~~~t~~~l~~~f~~~g~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~~ 217 (231)
.++.|.++...-=...+.+.+.. ..|..+.+-... +.+.|.|.+.++-..++..+ |+.
T Consensus 7 ~~~~v~gm~C~~C~~~ie~~l~~-~gv~~~~v~~~~-~~~~v~~~~~~~i~~~i~~~-Gy~ 64 (73)
T 3fry_A 7 IVLELSGLSCHHCVARVKKALEE-AGAKVEKVDLNE-AVVAGNKEDVDKYIKAVEAA-GYQ 64 (73)
T ss_dssp EEEEEESSBCGGGHHHHHHHHHH-TTCEEEEECSSE-EEEEEEGGGHHHHHHHHHHT-TCE
T ss_pred EEEEECCCCCHHHHHHHHHHhcc-CCcEEEEEEccC-CEEEEEECCHHHHHHHHHHc-CCc
Confidence 45788899888778889999999 888888875544 56888888555666677654 543
No 413
>3u5c_Y RP50, 40S ribosomal protein S24-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_U* 3j16_D 3u5g_Y
Probab=37.97 E-value=79 Score=21.67 Aligned_cols=48 Identities=21% Similarity=0.333 Sum_probs=30.9
Q ss_pred CccCHHHHHHHHHHhhccCCCeEEEEEec----CCCccceEEEEEcCHHHHHH
Q 026902 19 EKIKKEELKRSLYCLFSQYGRIFDVVALK----TPKLRGQAWVVFSEVTAASN 67 (231)
Q Consensus 19 ~~~te~~l~~~l~~~f~~~g~v~~v~~~~----~~~~~g~afV~f~~~e~A~~ 67 (231)
.+.+..||+..|..++..-..+..|.=.+ .|.+.|||.| |.+.+.|.+
T Consensus 33 aTpsr~eIrekLAk~y~~~~d~VvV~g~rT~fG~gkstGfa~I-Yds~d~akk 84 (135)
T 3u5c_Y 33 ANVSKDELREKLAEVYKAEKDAVSVFGFRTQFGGGKSVGFGLV-YNSVAEAKK 84 (135)
T ss_dssp CCCCHHHHHHHHHTTTTSCGGGEEEEEEEECTTSSEEEEEEEE-ESSHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEeccCCceEEEEEEE-eCCHHHHHh
Confidence 35788999976666666543444343333 3668888877 567777664
No 414
>4eyt_A Telomerase associated protein P65; RNA, LA protein, LARP7, RRM, XRRM, RNA binding protein; 2.50A {Tetrahymena thermophila} PDB: 4erd_A
Probab=33.04 E-value=92 Score=19.60 Aligned_cols=75 Identities=20% Similarity=0.199 Sum_probs=54.0
Q ss_pred CCCCCEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEEecCCCccceEEEEEcCHHHHHHHHHHhCC-------ceeC
Q 026902 6 IPPNQTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVALKTPKLRGQAWVVFSEVTAASNAVRQMQN-------FPFY 78 (231)
Q Consensus 6 ~~~~~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~~~~~~~~g~afV~f~~~e~A~~a~~~l~g-------~~~~ 78 (231)
...++-|-|-|+|..+-..++- -.....|--..|.. -.|.|.+.|.+.++-+-|++.|-+ ..+.
T Consensus 9 ikqnclikiinipqgtlkaevv----lavrhlgyefycdy-----idgqamirfqnsdeqrlaiqkllnhnnnklqieir 79 (129)
T 4eyt_A 9 IKQNCLIKIINIPQGTLKAEVV----LAVRHLGYEFYCDY-----IDGQAMIRFQNSDEQRLAIQKLLNHNNNKLQIEIR 79 (129)
T ss_dssp -CCSCEEEEECCCTTCCHHHHH----HHHHTTCCCEEEEE-----CSSCEEEEESSHHHHHHHHHHHEETTTTEEEEEET
T ss_pred hhhCcEEEEEecCCCceeeeeE----EeehhcCeeEeeee-----ecCeeEEEecCChHHHHHHHHHHhcCCCEEEEEEc
Confidence 3457778889999999988876 44455565455654 467899999999999999987621 4567
Q ss_pred CeeeEEEeccC
Q 026902 79 DKPMRIQYAKS 89 (231)
Q Consensus 79 g~~l~v~~~~~ 89 (231)
|+.+.|-...+
T Consensus 80 gqicdvistip 90 (129)
T 4eyt_A 80 GQICDVISTIP 90 (129)
T ss_dssp TEEEEEECCCC
T ss_pred ceeeeeeecCC
Confidence 87777755443
No 415
>2e5p_A Protein PHF1, PHD finger protein 1; tudor domain, PHF1 protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=33.02 E-value=24 Score=20.90 Aligned_cols=20 Identities=30% Similarity=0.388 Sum_probs=13.9
Q ss_pred CCCeEEEEEecCCCccceEEEEEcC
Q 026902 37 YGRIFDVVALKTPKLRGQAWVVFSE 61 (231)
Q Consensus 37 ~g~v~~v~~~~~~~~~g~afV~f~~ 61 (231)
.|.|..| ...++.|||.|.+
T Consensus 27 lGtV~kV-----~~~~~~ClV~FeD 46 (68)
T 2e5p_A 27 LGTIKKV-----DSAREVCLVQFED 46 (68)
T ss_dssp EEEEEEE-----ETTTTEEEEEETT
T ss_pred EeEEEEE-----ecCCcEEEEEEcc
Confidence 3566555 3468899999975
No 416
>2m0o_A PHD finger protein 1; tudor domain, H3K36ME3 binding, peptide binding protein; HET: M3L; NMR {Homo sapiens}
Probab=29.96 E-value=28 Score=21.21 Aligned_cols=21 Identities=29% Similarity=0.324 Sum_probs=14.9
Q ss_pred CCCeEEEEEecCCCccceEEEEEcCH
Q 026902 37 YGRIFDVVALKTPKLRGQAWVVFSEV 62 (231)
Q Consensus 37 ~g~v~~v~~~~~~~~~g~afV~f~~~ 62 (231)
.|.|.+| ...++.|+|.|.+.
T Consensus 44 LGTI~kV-----~~~~e~ClV~F~D~ 64 (79)
T 2m0o_A 44 LGTIKKV-----DSAREVCLVQFEDD 64 (79)
T ss_dssp EEEEEEE-----ETTTTEEEEEETTS
T ss_pred eEEEEEe-----ccCCCEEEEEEcCC
Confidence 3666665 34688999999753
No 417
>3ts2_A Protein LIN-28 homolog A; microrna biogenesis, protein-RNA complex, PRE-element, CCHC knuckle; HET: GMP; 2.01A {Mus musculus} PDB: 3trz_A* 3ts0_A*
Probab=28.89 E-value=15 Score=25.70 Aligned_cols=24 Identities=13% Similarity=0.008 Sum_probs=18.5
Q ss_pred HhhccCCCeEEEEEecCCCccceEEEEEc
Q 026902 32 CLFSQYGRIFDVVALKTPKLRGQAWVVFS 60 (231)
Q Consensus 32 ~~f~~~g~v~~v~~~~~~~~~g~afV~f~ 60 (231)
+++...|.|.-. ...+||+||.-.
T Consensus 6 ~l~~~~G~Vkwf-----n~~kGfGFI~~~ 29 (148)
T 3ts2_A 6 QLLHGAGICKWF-----NVRMGFGFLSMT 29 (148)
T ss_dssp CCEEEEEEEEEE-----ETTTTEEEEEEE
T ss_pred ccccceeEEEEE-----ECCCCeeEEeeC
Confidence 778888877655 347999999975
No 418
>2eqj_A Metal-response element-binding transcription factor 2; structure genomics,tudor domain, zinc-regulated factor 1, ZIRF1; NMR {Mus musculus}
Probab=28.79 E-value=31 Score=20.44 Aligned_cols=13 Identities=15% Similarity=0.593 Sum_probs=10.3
Q ss_pred CCccceEEEEEcC
Q 026902 49 PKLRGQAWVVFSE 61 (231)
Q Consensus 49 ~~~~g~afV~f~~ 61 (231)
...+|.|+|.|.+
T Consensus 38 ~~~~gtC~V~F~D 50 (66)
T 2eqj_A 38 NILKQSCFIIFED 50 (66)
T ss_dssp ETTTTEEEEEETT
T ss_pred ccCCcEEEEEEcc
Confidence 3468999999975
No 419
>3uzu_A Ribosomal RNA small subunit methyltransferase A; ssgcid, seattle structural genomics center for infectio disease; 1.75A {Burkholderia pseudomallei}
Probab=28.22 E-value=33 Score=26.62 Aligned_cols=32 Identities=25% Similarity=0.069 Sum_probs=23.8
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEEEE
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDVVA 45 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v~~ 45 (231)
....|+|||+.++..-|. .++.....+..+.+
T Consensus 115 ~~~vv~NlPY~iss~il~----~ll~~~~~~~~~~~ 146 (279)
T 3uzu_A 115 SLRIIGNLPYNISSPLLF----HLMSFAPVVIDQHF 146 (279)
T ss_dssp CEEEEEECCHHHHHHHHH----HHGGGGGGEEEEEE
T ss_pred ceEEEEccCccccHHHHH----HHHhccCCccEEEE
Confidence 467899999999998887 77775545555433
No 420
>2e5q_A PHD finger protein 19; tudor domain, isoform B, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=27.21 E-value=18 Score=21.14 Aligned_cols=13 Identities=15% Similarity=0.345 Sum_probs=10.1
Q ss_pred CCccceEEEEEcC
Q 026902 49 PKLRGQAWVVFSE 61 (231)
Q Consensus 49 ~~~~g~afV~f~~ 61 (231)
...+..|||.|.+
T Consensus 32 ~~~~~~ClV~FeD 44 (63)
T 2e5q_A 32 SSSKQSCLVTFED 44 (63)
T ss_dssp CSTTSEEEEEETT
T ss_pred ecCCCEEEEEEcc
Confidence 4467899999975
No 421
>3h7h_B Transcription elongation factor SPT5; helices surrounding beta sheet, activator, ME binding, nucleus, repressor, transcription regulation; 1.55A {Homo sapiens}
Probab=25.76 E-value=68 Score=20.90 Aligned_cols=35 Identities=20% Similarity=0.242 Sum_probs=27.8
Q ss_pred CeeEEEEeeCCCcEEEEEecCHHHHHHHHHHhcCC
Q 026902 182 GFKEVRMIEAKPGIAFVEFEDDVQSSMAMQALQGF 216 (231)
Q Consensus 182 ~v~~v~~~~~~~g~afV~f~~~~~A~~A~~~lng~ 216 (231)
.|.++..+.+=+||-||+=.+..+...|++.+-+.
T Consensus 40 ~I~Si~~~~~lkGyIyVEA~~~~~V~~ai~gi~~v 74 (106)
T 3h7h_B 40 QIKSVVAPEHVKGYIYVEAYKQTHVKQAIEGVGNL 74 (106)
T ss_dssp CCCEEEECTTCCSEEEEEESSHHHHHHHHTTCGGG
T ss_pred ceEEEEecCCCceEEEEEeCCHHHHHHHHhcccce
Confidence 46777776666899999999999988888776543
No 422
>3fut_A Dimethyladenosine transferase; methyltransferase, dimethyltransferase, dual-specific methyltransferase, 16S rRNA methyltransferase; 1.52A {Thermus thermophilus} PDB: 3fuu_A* 3fuv_A 3fuw_A* 3fux_A*
Probab=25.15 E-value=57 Score=25.15 Aligned_cols=29 Identities=21% Similarity=0.329 Sum_probs=22.0
Q ss_pred CEEEEeCCCCccCHHHHHHHHHHhhccCCCeEEE
Q 026902 10 QTIYIKNLNEKIKKEELKRSLYCLFSQYGRIFDV 43 (231)
Q Consensus 10 ~~v~v~nLp~~~te~~l~~~l~~~f~~~g~v~~v 43 (231)
.-+.|+|||+.++..-|. .++.. +.+..+
T Consensus 111 ~~~iv~NlPy~iss~il~----~ll~~-~~~~~~ 139 (271)
T 3fut_A 111 GSLLVANLPYHIATPLVT----RLLKT-GRFARL 139 (271)
T ss_dssp TEEEEEEECSSCCHHHHH----HHHHH-CCEEEE
T ss_pred ccEEEecCcccccHHHHH----HHhcC-CCCCEE
Confidence 467899999999999888 66655 555544
No 423
>4hcz_A PHD finger protein 1; protein-peptide complex, tudor, histone binding, H3K36ME3, N nucleus, transcription; HET: M3L; 1.85A {Homo sapiens}
Probab=23.55 E-value=46 Score=19.12 Aligned_cols=19 Identities=32% Similarity=0.408 Sum_probs=13.3
Q ss_pred CCeEEEEEecCCCccceEEEEEcC
Q 026902 38 GRIFDVVALKTPKLRGQAWVVFSE 61 (231)
Q Consensus 38 g~v~~v~~~~~~~~~g~afV~f~~ 61 (231)
|.|.+| ...+..|+|.|.+
T Consensus 22 GtI~~V-----~~~~~~clV~F~D 40 (58)
T 4hcz_A 22 GTIKKV-----DSAREVCLVQFED 40 (58)
T ss_dssp EEEEEE-----ETTTTEEEEEETT
T ss_pred EEEEEE-----ecCCCEEEEEEcC
Confidence 566555 3467799999975
No 424
>2g1d_A 30S ribosomal protein S24E; complete proteome, ribosome; NMR {Thermoplasma acidophilum} SCOP: d.12.1.3
Probab=23.23 E-value=74 Score=20.44 Aligned_cols=48 Identities=15% Similarity=0.057 Sum_probs=31.2
Q ss_pred CccCHHHHHHHHHHhhccCCCeEEEEEec----CCCccceEEEEEcCHHHHHH
Q 026902 19 EKIKKEELKRSLYCLFSQYGRIFDVVALK----TPKLRGQAWVVFSEVTAASN 67 (231)
Q Consensus 19 ~~~te~~l~~~l~~~f~~~g~v~~v~~~~----~~~~~g~afV~f~~~e~A~~ 67 (231)
.+.+..||+..|..++..-..+.-|.=.+ .+.+.|||.|. .+.+.|.+
T Consensus 29 ~tpsk~eirekLA~~~~~~~~~vvv~~~~t~fG~gks~G~a~IY-ds~e~~kk 80 (98)
T 2g1d_A 29 RTPSREEIKELIAKHEGVDKELVIVDNNKQLTGKHEIEGYTKIY-ADKPSAML 80 (98)
T ss_dssp SCCCHHHHHHHHHHHHHSCSTTEECCCCCCCSSSSEEEEEEEEE-SHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHCCCCCEEEEEeeEecCCCceEEEEEEEE-CCHHHHHh
Confidence 46788999988888887654443333333 36788888764 45555554
Done!