Query 026903
Match_columns 231
No_of_seqs 177 out of 2765
Neff 9.6
Searched_HMMs 46136
Date Fri Mar 29 14:20:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026903.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026903hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PRK13256 thiopurine S-methyltr 99.9 9.7E-26 2.1E-30 176.4 14.9 159 73-231 7-181 (226)
2 TIGR03840 TMPT_Se_Te thiopurin 99.9 3.5E-25 7.5E-30 173.4 16.1 156 76-231 1-171 (213)
3 PRK13255 thiopurine S-methyltr 99.9 3.6E-24 7.9E-29 168.2 15.9 157 75-231 3-174 (218)
4 PF05724 TPMT: Thiopurine S-me 99.9 7.8E-25 1.7E-29 171.6 9.5 156 75-231 3-174 (218)
5 PRK11207 tellurite resistance 99.9 1.1E-21 2.3E-26 152.5 14.5 138 91-231 15-155 (197)
6 PF12847 Methyltransf_18: Meth 99.9 2.1E-20 4.6E-25 132.2 12.8 106 108-213 1-111 (112)
7 PF03848 TehB: Tellurite resis 99.8 6.4E-20 1.4E-24 140.0 13.3 132 75-217 6-137 (192)
8 TIGR00477 tehB tellurite resis 99.8 1.5E-19 3.3E-24 140.2 15.3 117 95-215 19-135 (195)
9 COG2226 UbiE Methylase involve 99.8 7.5E-20 1.6E-24 143.9 13.0 108 108-218 51-161 (238)
10 COG2227 UbiG 2-polyprenyl-3-me 99.8 2E-20 4.4E-25 144.9 8.0 150 55-216 9-164 (243)
11 PLN02244 tocopherol O-methyltr 99.8 2.1E-18 4.5E-23 144.6 18.1 107 108-216 118-226 (340)
12 PF01209 Ubie_methyltran: ubiE 99.8 1.1E-19 2.4E-24 144.1 9.7 110 106-218 45-158 (233)
13 PRK11036 putative S-adenosyl-L 99.8 5.9E-19 1.3E-23 142.6 11.6 117 98-216 34-152 (255)
14 PF08241 Methyltransf_11: Meth 99.8 7.4E-19 1.6E-23 120.2 10.4 93 113-211 1-95 (95)
15 PLN02396 hexaprenyldihydroxybe 99.8 4.6E-19 1E-23 146.5 10.8 107 108-216 131-238 (322)
16 PRK12335 tellurite resistance 99.8 4.4E-18 9.5E-23 139.7 15.7 116 95-214 109-224 (287)
17 PTZ00098 phosphoethanolamine N 99.8 5.8E-18 1.3E-22 137.1 15.4 137 75-217 21-160 (263)
18 PF05401 NodS: Nodulation prot 99.8 2.5E-18 5.5E-23 129.9 11.5 128 85-215 15-148 (201)
19 KOG1270 Methyltransferases [Co 99.8 1E-18 2.3E-23 136.4 9.7 103 110-216 91-198 (282)
20 PRK15451 tRNA cmo(5)U34 methyl 99.8 4.9E-18 1.1E-22 136.5 13.7 113 101-214 49-165 (247)
21 PF13847 Methyltransf_31: Meth 99.8 3.8E-18 8.3E-23 127.3 11.7 105 108-215 3-112 (152)
22 PLN02233 ubiquinone biosynthes 99.8 1.2E-17 2.6E-22 135.2 13.0 110 107-218 72-187 (261)
23 TIGR00740 methyltransferase, p 99.8 2.4E-17 5.1E-22 132.0 14.3 109 107-216 52-164 (239)
24 PF13649 Methyltransf_25: Meth 99.7 5.8E-18 1.2E-22 117.6 7.6 94 112-207 1-101 (101)
25 PLN02336 phosphoethanolamine N 99.7 6.5E-17 1.4E-21 141.7 15.3 158 53-217 208-373 (475)
26 PF02353 CMAS: Mycolic acid cy 99.7 3.7E-17 8E-22 132.5 11.9 117 98-216 51-169 (273)
27 TIGR03587 Pse_Me-ase pseudamin 99.7 5.6E-17 1.2E-21 126.4 12.4 101 108-216 43-145 (204)
28 TIGR00452 methyltransferase, p 99.7 2.8E-16 6.1E-21 129.5 15.8 117 100-218 112-230 (314)
29 PRK14103 trans-aconitate 2-met 99.7 6E-17 1.3E-21 130.9 10.9 106 99-214 19-127 (255)
30 COG2230 Cfa Cyclopropane fatty 99.7 1.6E-16 3.5E-21 127.3 12.9 144 72-218 36-181 (283)
31 PRK15068 tRNA mo(5)U34 methylt 99.7 2E-16 4.2E-21 131.5 12.9 110 106-217 120-230 (322)
32 PRK10258 biotin biosynthesis p 99.7 2.1E-16 4.6E-21 127.4 12.6 102 108-217 42-144 (251)
33 TIGR02752 MenG_heptapren 2-hep 99.7 5.9E-16 1.3E-20 123.3 14.0 115 99-216 35-154 (231)
34 PRK01683 trans-aconitate 2-met 99.7 2.8E-16 6E-21 127.2 12.0 107 99-213 21-130 (258)
35 COG4106 Tam Trans-aconitate me 99.7 8.5E-17 1.8E-21 122.2 7.7 99 107-213 29-129 (257)
36 smart00828 PKS_MT Methyltransf 99.7 2.8E-16 6.1E-21 124.5 11.0 105 110-216 1-107 (224)
37 PF05175 MTS: Methyltransferas 99.7 8.2E-16 1.8E-20 116.8 13.0 106 108-214 31-141 (170)
38 PF08003 Methyltransf_9: Prote 99.7 5.9E-16 1.3E-20 124.3 11.3 110 106-219 113-225 (315)
39 TIGR00138 gidB 16S rRNA methyl 99.7 8.4E-16 1.8E-20 117.6 11.6 100 107-213 41-142 (181)
40 KOG1540 Ubiquinone biosynthesi 99.7 1.5E-15 3.3E-20 118.2 12.9 110 107-218 99-219 (296)
41 PF08242 Methyltransf_12: Meth 99.7 5.1E-18 1.1E-22 117.4 -0.7 95 113-209 1-99 (99)
42 smart00138 MeTrc Methyltransfe 99.7 3.5E-16 7.6E-21 126.7 9.9 104 109-212 100-241 (264)
43 PF13489 Methyltransf_23: Meth 99.7 7.1E-16 1.5E-20 115.7 10.6 98 106-216 20-118 (161)
44 PLN03075 nicotianamine synthas 99.7 9.7E-16 2.1E-20 124.2 11.6 138 75-213 79-233 (296)
45 TIGR02716 C20_methyl_CrtF C-20 99.7 2.4E-15 5.1E-20 124.7 14.2 110 108-219 149-260 (306)
46 PRK00107 gidB 16S rRNA methylt 99.7 1.3E-15 2.7E-20 116.9 11.5 101 109-216 46-148 (187)
47 PRK11873 arsM arsenite S-adeno 99.6 1.9E-15 4.1E-20 123.3 12.3 108 107-217 76-187 (272)
48 TIGR02021 BchM-ChlM magnesium 99.6 3.1E-15 6.7E-20 118.2 13.1 102 108-211 55-156 (219)
49 PRK11705 cyclopropane fatty ac 99.6 3.8E-15 8.3E-20 126.5 14.4 111 101-217 159-271 (383)
50 KOG2361 Predicted methyltransf 99.6 1.1E-15 2.5E-20 118.0 9.6 143 72-218 33-188 (264)
51 PLN02585 magnesium protoporphy 99.6 6.2E-15 1.4E-19 121.6 14.6 101 107-210 143-247 (315)
52 PRK11088 rrmA 23S rRNA methylt 99.6 7.2E-15 1.6E-19 119.8 14.4 158 28-216 17-184 (272)
53 PRK15001 SAM-dependent 23S rib 99.6 1.1E-14 2.3E-19 122.7 15.6 105 109-213 229-340 (378)
54 PRK07580 Mg-protoporphyrin IX 99.6 7.1E-15 1.5E-19 116.9 13.5 144 64-209 11-162 (230)
55 PLN02490 MPBQ/MSBQ methyltrans 99.6 3.6E-15 7.8E-20 123.9 12.1 100 108-213 113-215 (340)
56 PLN02336 phosphoethanolamine N 99.6 5.7E-15 1.2E-19 129.5 13.7 106 108-216 37-145 (475)
57 TIGR00537 hemK_rel_arch HemK-r 99.6 1.2E-14 2.5E-19 111.4 13.8 108 107-217 18-144 (179)
58 PF13659 Methyltransf_26: Meth 99.6 2.3E-15 5E-20 107.1 8.7 104 110-213 2-115 (117)
59 TIGR02072 BioC biotin biosynth 99.6 6.7E-15 1.4E-19 117.5 12.2 102 108-216 34-138 (240)
60 TIGR00406 prmA ribosomal prote 99.6 1.1E-14 2.4E-19 119.6 13.0 111 100-216 151-262 (288)
61 PRK00121 trmB tRNA (guanine-N( 99.6 4.6E-15 1E-19 115.7 10.2 105 108-213 40-156 (202)
62 PRK13944 protein-L-isoaspartat 99.6 1.6E-14 3.5E-19 112.9 13.3 107 99-213 62-173 (205)
63 PRK05785 hypothetical protein; 99.6 7.7E-15 1.7E-19 116.3 11.5 95 108-215 51-147 (226)
64 PRK06922 hypothetical protein; 99.6 8.7E-15 1.9E-19 128.9 12.9 106 107-214 417-538 (677)
65 TIGR03533 L3_gln_methyl protei 99.6 2.4E-14 5.3E-19 117.1 14.5 105 109-213 122-251 (284)
66 KOG1271 Methyltransferases [Ge 99.6 4.9E-15 1.1E-19 109.7 8.6 139 75-213 18-181 (227)
67 PRK00216 ubiE ubiquinone/menaq 99.6 1.6E-14 3.5E-19 115.3 12.1 108 108-217 51-162 (239)
68 COG2264 PrmA Ribosomal protein 99.6 8.5E-15 1.8E-19 118.4 10.1 112 98-214 152-264 (300)
69 PRK05134 bifunctional 3-demeth 99.6 2.2E-14 4.7E-19 114.4 12.2 106 106-215 46-153 (233)
70 PRK06202 hypothetical protein; 99.6 2E-14 4.3E-19 114.6 11.5 104 108-217 60-170 (232)
71 TIGR02469 CbiT precorrin-6Y C5 99.6 6.1E-14 1.3E-18 100.5 12.9 101 108-214 19-123 (124)
72 TIGR00536 hemK_fam HemK family 99.6 5.7E-14 1.2E-18 115.2 14.1 104 110-213 116-244 (284)
73 PRK08317 hypothetical protein; 99.6 6.3E-14 1.4E-18 111.8 13.6 105 107-215 18-126 (241)
74 PF06325 PrmA: Ribosomal prote 99.6 1.3E-14 2.9E-19 118.2 9.2 111 98-216 151-262 (295)
75 PRK00517 prmA ribosomal protei 99.6 3.7E-14 8E-19 114.2 11.5 104 101-216 112-216 (250)
76 PRK14967 putative methyltransf 99.6 1E-13 2.2E-18 109.9 13.8 115 97-213 24-159 (223)
77 PRK01544 bifunctional N5-gluta 99.6 7E-14 1.5E-18 122.8 13.9 165 47-212 39-268 (506)
78 TIGR00080 pimt protein-L-isoas 99.6 5.6E-14 1.2E-18 110.7 12.0 106 99-213 67-177 (215)
79 PRK00312 pcm protein-L-isoaspa 99.6 1.2E-13 2.5E-18 108.7 13.7 129 77-214 43-176 (212)
80 PRK11805 N5-glutamine S-adenos 99.6 1.9E-13 4.2E-18 112.9 15.6 103 110-212 135-262 (307)
81 COG2518 Pcm Protein-L-isoaspar 99.6 6.4E-14 1.4E-18 107.4 11.7 108 98-214 61-170 (209)
82 PRK13942 protein-L-isoaspartat 99.6 1E-13 2.2E-18 108.9 13.3 105 99-212 66-175 (212)
83 KOG4300 Predicted methyltransf 99.6 2.9E-14 6.3E-19 107.7 9.5 105 110-217 78-186 (252)
84 PRK09489 rsmC 16S ribosomal RN 99.6 1.6E-13 3.4E-18 114.8 15.0 103 109-214 197-304 (342)
85 PRK14968 putative methyltransf 99.6 1.2E-13 2.7E-18 106.3 13.3 109 107-215 22-150 (188)
86 TIGR01934 MenG_MenH_UbiE ubiqu 99.5 8.2E-14 1.8E-18 110.0 12.3 104 108-216 39-146 (223)
87 TIGR00091 tRNA (guanine-N(7)-) 99.5 3.3E-14 7.1E-19 110.3 9.7 104 109-213 17-132 (194)
88 COG4123 Predicted O-methyltran 99.5 4.3E-14 9.3E-19 111.5 10.4 107 109-215 45-172 (248)
89 PRK08287 cobalt-precorrin-6Y C 99.5 7.8E-14 1.7E-18 107.5 11.5 100 107-213 30-131 (187)
90 PRK14966 unknown domain/N5-glu 99.5 2.7E-13 5.8E-18 114.7 15.4 163 46-211 177-379 (423)
91 TIGR03534 RF_mod_PrmC protein- 99.5 2.2E-13 4.8E-18 109.7 14.2 115 98-213 77-217 (251)
92 TIGR03438 probable methyltrans 99.5 1.2E-13 2.5E-18 114.2 12.5 106 108-213 63-177 (301)
93 PRK09328 N5-glutamine S-adenos 99.5 5.1E-13 1.1E-17 109.1 16.2 105 107-212 107-237 (275)
94 PF00891 Methyltransf_2: O-met 99.5 7.8E-14 1.7E-18 111.8 10.9 104 110-223 102-209 (241)
95 PRK00377 cbiT cobalt-precorrin 99.5 7.5E-13 1.6E-17 103.0 12.9 101 107-212 39-144 (198)
96 COG2813 RsmC 16S RNA G1207 met 99.5 1.1E-12 2.5E-17 105.6 14.0 121 92-214 141-267 (300)
97 TIGR01983 UbiG ubiquinone bios 99.5 3.7E-13 8.1E-18 106.6 11.0 105 108-215 45-151 (224)
98 PRK14121 tRNA (guanine-N(7)-)- 99.5 7.7E-13 1.7E-17 111.2 12.9 105 108-213 122-235 (390)
99 TIGR01177 conserved hypothetic 99.5 1E-12 2.2E-17 110.0 13.6 106 107-213 181-294 (329)
100 PRK04266 fibrillarin; Provisio 99.5 1.2E-12 2.5E-17 103.5 12.2 99 107-212 71-175 (226)
101 PRK11188 rrmJ 23S rRNA methylt 99.5 9E-13 1.9E-17 103.2 11.2 99 107-217 50-169 (209)
102 cd02440 AdoMet_MTases S-adenos 99.5 2.5E-12 5.4E-17 88.3 12.2 100 111-212 1-103 (107)
103 PF05891 Methyltransf_PK: AdoM 99.4 1E-12 2.2E-17 101.2 10.9 106 110-216 57-164 (218)
104 PHA03411 putative methyltransf 99.4 1.5E-12 3.3E-17 104.3 11.7 112 94-212 51-182 (279)
105 PRK04457 spermidine synthase; 99.4 1.4E-12 3.1E-17 105.5 11.8 109 108-216 66-180 (262)
106 PF01739 CheR: CheR methyltran 99.4 2.9E-13 6.3E-18 104.4 7.3 104 108-211 31-173 (196)
107 PLN02781 Probable caffeoyl-CoA 99.4 1.3E-12 2.8E-17 104.0 10.9 102 107-213 67-178 (234)
108 PF07021 MetW: Methionine bios 99.4 7.5E-13 1.6E-17 100.1 9.0 98 106-217 11-112 (193)
109 PF03291 Pox_MCEL: mRNA cappin 99.4 1.5E-12 3.3E-17 108.2 10.9 109 108-216 62-189 (331)
110 COG2242 CobL Precorrin-6B meth 99.4 5E-12 1.1E-16 95.1 12.6 101 106-213 32-135 (187)
111 PF01135 PCMT: Protein-L-isoas 99.4 7.7E-13 1.7E-17 103.1 8.5 108 98-214 61-173 (209)
112 PRK07402 precorrin-6B methylas 99.4 2.5E-12 5.5E-17 99.9 10.9 102 108-216 40-145 (196)
113 COG2890 HemK Methylase of poly 99.4 5.1E-12 1.1E-16 103.0 12.8 156 53-211 43-236 (280)
114 KOG1541 Predicted protein carb 99.4 3.4E-12 7.3E-17 97.6 10.8 104 109-218 51-165 (270)
115 TIGR03704 PrmC_rel_meth putati 99.4 5.2E-12 1.1E-16 101.6 12.0 100 110-213 88-216 (251)
116 PRK00811 spermidine synthase; 99.4 6.9E-12 1.5E-16 102.6 12.4 106 107-212 75-190 (283)
117 PTZ00146 fibrillarin; Provisio 99.4 7.6E-12 1.6E-16 101.3 12.4 99 107-212 131-236 (293)
118 PRK15128 23S rRNA m(5)C1962 me 99.4 5.9E-12 1.3E-16 107.2 11.6 107 108-214 220-340 (396)
119 TIGR02081 metW methionine bios 99.4 3.8E-12 8.2E-17 98.7 9.3 88 108-205 13-104 (194)
120 PLN02476 O-methyltransferase 99.3 2.5E-11 5.4E-16 98.1 13.2 103 107-214 117-229 (278)
121 PRK10611 chemotaxis methyltran 99.3 3.9E-12 8.5E-17 103.5 8.7 108 109-217 116-265 (287)
122 KOG3010 Methyltransferase [Gen 99.3 4E-12 8.8E-17 98.5 8.1 117 95-215 21-139 (261)
123 PRK13943 protein-L-isoaspartat 99.3 1.5E-11 3.2E-16 101.9 11.9 106 99-213 70-180 (322)
124 COG4122 Predicted O-methyltran 99.3 2.4E-11 5.2E-16 94.6 11.8 107 107-218 58-171 (219)
125 PRK11783 rlmL 23S rRNA m(2)G24 99.3 7.3E-12 1.6E-16 114.2 10.1 107 108-214 538-657 (702)
126 smart00650 rADc Ribosomal RNA 99.3 2.3E-11 5E-16 92.2 11.3 109 100-215 4-114 (169)
127 TIGR00438 rrmJ cell division p 99.3 1.6E-11 3.4E-16 94.8 10.4 107 98-216 20-149 (188)
128 PF01596 Methyltransf_3: O-met 99.3 9.4E-12 2E-16 96.8 8.9 103 107-214 44-156 (205)
129 PRK14904 16S rRNA methyltransf 99.3 3.4E-11 7.4E-16 104.7 13.3 110 107-217 249-381 (445)
130 PRK10909 rsmD 16S rRNA m(2)G96 99.3 6.7E-11 1.4E-15 91.6 13.6 106 107-216 52-162 (199)
131 PF02390 Methyltransf_4: Putat 99.3 1.8E-11 3.8E-16 94.8 9.7 103 110-213 19-133 (195)
132 COG1352 CheR Methylase of chem 99.3 3.8E-11 8.2E-16 96.6 11.0 107 109-216 97-243 (268)
133 PRK10901 16S rRNA methyltransf 99.3 7.4E-11 1.6E-15 102.1 13.2 108 106-215 242-374 (427)
134 KOG2899 Predicted methyltransf 99.3 6.1E-11 1.3E-15 92.0 10.9 132 76-212 30-208 (288)
135 TIGR00563 rsmB ribosomal RNA s 99.3 6.5E-11 1.4E-15 102.4 12.5 112 106-217 236-372 (426)
136 PLN02232 ubiquinone biosynthes 99.3 3.1E-11 6.8E-16 90.7 8.8 82 134-217 1-85 (160)
137 PHA03412 putative methyltransf 99.3 1.2E-10 2.5E-15 91.5 12.2 97 108-211 49-160 (241)
138 PRK03522 rumB 23S rRNA methylu 99.3 7.1E-11 1.5E-15 98.3 11.8 105 107-217 172-278 (315)
139 PLN02589 caffeoyl-CoA O-methyl 99.3 4.9E-11 1.1E-15 95.2 10.1 102 107-213 78-190 (247)
140 PLN02366 spermidine synthase 99.3 1.3E-10 2.8E-15 95.8 12.7 105 107-211 90-204 (308)
141 COG2519 GCD14 tRNA(1-methylade 99.2 5.1E-11 1.1E-15 93.6 9.7 100 106-212 92-194 (256)
142 KOG1975 mRNA cap methyltransfe 99.2 3.2E-11 7E-16 97.1 8.5 120 94-213 102-237 (389)
143 PLN02672 methionine S-methyltr 99.2 7.9E-11 1.7E-15 110.1 12.3 123 90-212 94-277 (1082)
144 PRK14903 16S rRNA methyltransf 99.2 1.2E-10 2.6E-15 100.7 12.4 111 106-217 235-370 (431)
145 PF10294 Methyltransf_16: Puta 99.2 5.7E-11 1.2E-15 90.4 9.2 105 106-213 43-156 (173)
146 TIGR00417 speE spermidine synt 99.2 1.3E-10 2.7E-15 94.7 11.5 105 108-212 72-185 (270)
147 TIGR00446 nop2p NOL1/NOP2/sun 99.2 1.7E-10 3.7E-15 93.6 11.4 111 106-217 69-203 (264)
148 PRK14901 16S rRNA methyltransf 99.2 2E-10 4.3E-15 99.6 12.4 109 107-216 251-387 (434)
149 PRK13168 rumA 23S rRNA m(5)U19 99.2 1.7E-10 3.8E-15 100.3 11.9 103 107-216 296-403 (443)
150 PRK01581 speE spermidine synth 99.2 2.3E-10 5E-15 95.2 11.9 107 106-212 148-267 (374)
151 COG0220 Predicted S-adenosylme 99.2 1.3E-10 2.7E-15 91.6 9.6 103 110-213 50-164 (227)
152 PRK14902 16S rRNA methyltransf 99.2 2.3E-10 5E-15 99.6 12.1 108 107-215 249-381 (444)
153 PF06080 DUF938: Protein of un 99.2 2E-10 4.2E-15 88.2 10.2 103 111-213 28-141 (204)
154 TIGR02085 meth_trns_rumB 23S r 99.2 1.4E-10 3E-15 98.6 10.3 103 107-215 232-336 (374)
155 KOG1499 Protein arginine N-met 99.2 8.8E-11 1.9E-15 96.0 8.4 104 106-210 58-164 (346)
156 KOG2904 Predicted methyltransf 99.2 1.1E-09 2.3E-14 86.6 14.2 107 107-213 147-285 (328)
157 TIGR00095 RNA methyltransferas 99.2 4.5E-10 9.9E-15 86.5 12.0 106 107-216 48-161 (189)
158 COG4976 Predicted methyltransf 99.2 1.1E-11 2.3E-16 95.4 1.7 112 97-216 113-228 (287)
159 COG2263 Predicted RNA methylas 99.1 4.2E-10 9.1E-15 84.6 9.8 77 105-185 42-119 (198)
160 COG1041 Predicted DNA modifica 99.1 9.1E-10 2E-14 90.6 12.6 122 92-214 179-311 (347)
161 PRK03612 spermidine synthase; 99.1 3E-10 6.4E-15 100.5 10.2 106 108-213 297-415 (521)
162 PF05185 PRMT5: PRMT5 arginine 99.1 2.5E-10 5.5E-15 98.6 9.5 102 109-210 187-294 (448)
163 PF02475 Met_10: Met-10+ like- 99.1 4E-10 8.6E-15 87.1 9.0 106 98-210 92-199 (200)
164 COG3963 Phospholipid N-methylt 99.1 2.6E-09 5.6E-14 78.5 12.3 115 98-218 37-161 (194)
165 PRK11727 23S rRNA mA1618 methy 99.1 8.6E-10 1.9E-14 91.2 10.8 79 109-187 115-202 (321)
166 PF03602 Cons_hypoth95: Conser 99.1 2.7E-10 5.8E-15 87.2 7.1 108 107-216 41-156 (183)
167 COG1092 Predicted SAM-dependen 99.1 7.1E-10 1.5E-14 93.6 10.2 107 108-214 217-337 (393)
168 PF08704 GCD14: tRNA methyltra 99.1 4E-10 8.6E-15 89.8 8.1 108 98-212 29-145 (247)
169 KOG1500 Protein arginine N-met 99.1 1.2E-09 2.6E-14 88.7 10.4 103 106-210 175-279 (517)
170 PRK04148 hypothetical protein; 99.1 6.2E-09 1.3E-13 74.9 12.2 96 108-218 16-114 (134)
171 PF12147 Methyltransf_20: Puta 99.1 4E-09 8.8E-14 84.5 12.3 110 108-217 135-255 (311)
172 KOG3178 Hydroxyindole-O-methyl 99.1 1.6E-09 3.6E-14 88.8 10.3 100 110-216 179-278 (342)
173 TIGR00479 rumA 23S rRNA (uraci 99.0 2.1E-09 4.5E-14 93.3 10.8 101 108-214 292-397 (431)
174 PF10672 Methyltrans_SAM: S-ad 99.0 7.7E-10 1.7E-14 89.9 7.3 110 107-216 122-241 (286)
175 PF05148 Methyltransf_8: Hypot 99.0 1.1E-09 2.3E-14 83.9 6.7 116 79-216 45-161 (219)
176 COG2520 Predicted methyltransf 99.0 4.1E-09 8.8E-14 87.3 10.5 114 99-219 180-295 (341)
177 PF09445 Methyltransf_15: RNA 99.0 4.5E-10 9.8E-15 83.6 4.3 72 111-182 2-77 (163)
178 TIGR02143 trmA_only tRNA (urac 99.0 1.1E-09 2.4E-14 92.3 6.8 100 109-216 198-314 (353)
179 PF01170 UPF0020: Putative RNA 99.0 1E-08 2.2E-13 78.3 11.4 117 94-210 12-148 (179)
180 KOG1663 O-methyltransferase [S 99.0 4.6E-08 9.9E-13 75.8 14.6 111 96-213 63-183 (237)
181 PTZ00338 dimethyladenosine tra 99.0 4.7E-09 1E-13 86.2 9.7 90 95-185 22-112 (294)
182 PLN02823 spermine synthase 98.9 1.1E-08 2.4E-13 85.4 11.6 105 108-212 103-219 (336)
183 TIGR00755 ksgA dimethyladenosi 98.9 2.2E-08 4.9E-13 80.8 13.0 109 95-214 15-127 (253)
184 PRK05031 tRNA (uracil-5-)-meth 98.9 2.4E-09 5.2E-14 90.7 7.6 98 110-215 208-322 (362)
185 KOG3045 Predicted RNA methylas 98.9 3.6E-09 7.9E-14 83.0 7.8 114 79-216 153-267 (325)
186 KOG3191 Predicted N6-DNA-methy 98.9 1.1E-08 2.4E-13 76.3 9.8 108 109-218 44-173 (209)
187 KOG2730 Methylase [General fun 98.9 7.5E-10 1.6E-14 84.8 3.8 120 86-207 70-196 (263)
188 PRK14896 ksgA 16S ribosomal RN 98.9 9.3E-09 2E-13 83.2 10.4 87 95-185 15-102 (258)
189 KOG1661 Protein-L-isoaspartate 98.9 1.1E-08 2.3E-13 78.1 9.1 106 99-212 73-192 (237)
190 PF05219 DREV: DREV methyltran 98.9 8.5E-09 1.8E-13 81.6 8.9 93 109-213 95-188 (265)
191 PRK00274 ksgA 16S ribosomal RN 98.9 8.5E-09 1.8E-13 84.1 9.1 86 95-184 28-115 (272)
192 COG0742 N6-adenine-specific me 98.9 4.2E-08 9E-13 74.4 11.5 107 107-213 42-154 (187)
193 PRK01544 bifunctional N5-gluta 98.8 1.4E-08 3E-13 89.6 9.2 104 109-213 348-462 (506)
194 COG2521 Predicted archaeal met 98.8 7.6E-09 1.7E-13 80.1 6.7 109 108-216 134-248 (287)
195 PRK00050 16S rRNA m(4)C1402 me 98.8 3.1E-08 6.8E-13 81.0 10.6 81 98-181 8-97 (296)
196 KOG2940 Predicted methyltransf 98.8 3.1E-09 6.7E-14 82.1 3.1 103 110-217 74-178 (325)
197 KOG3420 Predicted RNA methylas 98.8 2.8E-08 6.1E-13 71.4 7.4 78 106-185 46-125 (185)
198 PF07942 N2227: N2227-like pro 98.8 4E-08 8.7E-13 79.1 9.1 100 109-210 57-199 (270)
199 COG2265 TrmA SAM-dependent met 98.8 3.7E-08 8.1E-13 84.8 9.4 103 108-216 293-399 (432)
200 PRK04338 N(2),N(2)-dimethylgua 98.8 1.9E-08 4.1E-13 85.5 7.5 97 109-212 58-157 (382)
201 PRK00536 speE spermidine synth 98.8 6.4E-08 1.4E-12 77.8 9.5 97 106-211 70-169 (262)
202 PF01564 Spermine_synth: Sperm 98.7 4.9E-08 1.1E-12 78.3 8.2 110 107-216 75-194 (246)
203 COG0421 SpeE Spermidine syntha 98.7 1.7E-07 3.8E-12 76.2 10.9 102 110-212 78-189 (282)
204 TIGR00478 tly hemolysin TlyA f 98.7 1.3E-07 2.9E-12 74.7 9.9 100 96-213 61-171 (228)
205 PF02527 GidB: rRNA small subu 98.7 5.4E-08 1.2E-12 74.4 7.4 96 110-212 50-147 (184)
206 COG0030 KsgA Dimethyladenosine 98.7 2.6E-07 5.6E-12 73.9 11.0 93 95-191 16-111 (259)
207 KOG1331 Predicted methyltransf 98.6 7.9E-08 1.7E-12 76.8 6.6 114 95-218 33-148 (293)
208 KOG0820 Ribosomal RNA adenine 98.6 3.5E-07 7.6E-12 72.5 10.0 87 96-183 45-132 (315)
209 KOG2915 tRNA(1-methyladenosine 98.6 3.5E-07 7.7E-12 72.5 9.8 104 98-208 94-204 (314)
210 TIGR03439 methyl_EasF probable 98.6 5.8E-07 1.3E-11 74.5 11.6 103 108-211 76-195 (319)
211 TIGR00308 TRM1 tRNA(guanine-26 98.6 9.8E-08 2.1E-12 80.8 6.8 97 110-213 46-147 (374)
212 PF09243 Rsm22: Mitochondrial 98.6 5E-07 1.1E-11 73.7 10.4 107 107-215 32-141 (274)
213 PRK11783 rlmL 23S rRNA m(2)G24 98.6 7.3E-07 1.6E-11 81.8 11.9 107 108-214 190-348 (702)
214 PF03141 Methyltransf_29: Puta 98.6 7.4E-08 1.6E-12 82.6 4.6 102 110-217 119-223 (506)
215 COG0116 Predicted N6-adenine-s 98.5 1.1E-06 2.4E-11 73.6 11.3 109 106-214 189-345 (381)
216 PF01234 NNMT_PNMT_TEMT: NNMT/ 98.5 4.3E-07 9.3E-12 72.7 8.4 110 106-215 54-201 (256)
217 PF08123 DOT1: Histone methyla 98.5 4.4E-07 9.6E-12 70.6 8.1 114 95-211 28-156 (205)
218 PF05958 tRNA_U5-meth_tr: tRNA 98.5 3.7E-07 8.1E-12 77.1 8.2 62 106-168 194-255 (352)
219 COG3897 Predicted methyltransf 98.5 6.8E-07 1.5E-11 67.6 8.5 119 76-211 55-176 (218)
220 PF02384 N6_Mtase: N-6 DNA Met 98.5 5.2E-07 1.1E-11 75.0 8.9 120 94-213 31-183 (311)
221 KOG1269 SAM-dependent methyltr 98.5 1.2E-07 2.6E-12 79.7 4.7 110 106-217 108-219 (364)
222 PF06962 rRNA_methylase: Putat 98.5 4.8E-07 1E-11 65.5 7.0 83 132-216 1-95 (140)
223 COG0500 SmtA SAM-dependent met 98.5 5.1E-06 1.1E-10 61.0 12.9 103 112-218 52-160 (257)
224 PF01728 FtsJ: FtsJ-like methy 98.5 4.3E-07 9.2E-12 69.6 7.0 107 98-216 9-142 (181)
225 COG0357 GidB Predicted S-adeno 98.5 5.3E-07 1.1E-11 70.3 7.4 96 109-211 68-166 (215)
226 PRK11933 yebU rRNA (cytosine-C 98.5 2.7E-06 5.9E-11 74.2 11.9 109 106-215 111-244 (470)
227 PF03059 NAS: Nicotianamine sy 98.4 6.1E-07 1.3E-11 72.5 6.9 103 109-212 121-229 (276)
228 PF13679 Methyltransf_32: Meth 98.4 1.5E-06 3.3E-11 63.8 8.4 91 107-201 24-122 (141)
229 PF11968 DUF3321: Putative met 98.4 1.9E-06 4.2E-11 66.6 8.3 102 95-213 32-149 (219)
230 KOG2352 Predicted spermine/spe 98.4 1.9E-06 4.1E-11 73.9 8.9 106 107-214 46-162 (482)
231 TIGR02987 met_A_Alw26 type II 98.3 3.3E-06 7.1E-11 75.2 10.1 76 109-185 32-123 (524)
232 PF04672 Methyltransf_19: S-ad 98.3 4.1E-06 9E-11 67.1 9.3 107 110-217 70-194 (267)
233 COG0293 FtsJ 23S rRNA methylas 98.3 8.7E-06 1.9E-10 62.8 10.5 109 97-217 32-163 (205)
234 COG4076 Predicted RNA methylas 98.3 1.3E-06 2.7E-11 65.8 5.6 99 110-210 34-132 (252)
235 KOG1709 Guanidinoacetate methy 98.3 7.1E-06 1.5E-10 63.1 9.6 113 95-211 88-204 (271)
236 PF04816 DUF633: Family of unk 98.3 1E-05 2.2E-10 63.0 10.0 71 112-182 1-74 (205)
237 PF13578 Methyltransf_24: Meth 98.3 4.5E-07 9.8E-12 63.1 2.1 98 113-214 1-106 (106)
238 PF00398 RrnaAD: Ribosomal RNA 98.2 7.2E-06 1.6E-10 66.6 8.9 103 95-205 16-123 (262)
239 PF05971 Methyltransf_10: Prot 98.2 8.9E-06 1.9E-10 66.5 8.6 91 98-188 89-191 (299)
240 TIGR00006 S-adenosyl-methyltra 98.2 2.9E-05 6.3E-10 63.8 11.3 81 98-180 9-98 (305)
241 COG4262 Predicted spermidine s 98.2 2.4E-05 5.1E-10 64.8 10.6 106 110-215 291-409 (508)
242 PRK11760 putative 23S rRNA C24 98.1 1.1E-05 2.5E-10 66.7 7.6 69 107-183 210-279 (357)
243 KOG4058 Uncharacterized conser 98.1 3.1E-05 6.7E-10 56.1 8.6 116 95-217 58-176 (199)
244 KOG3115 Methyltransferase-like 98.1 1.8E-05 3.8E-10 60.4 7.7 104 110-213 62-183 (249)
245 COG0144 Sun tRNA and rRNA cyto 98.1 7.6E-05 1.6E-09 63.2 12.5 108 106-214 154-289 (355)
246 KOG3987 Uncharacterized conser 98.0 1.9E-06 4.1E-11 65.8 1.0 93 108-212 112-206 (288)
247 COG1189 Predicted rRNA methyla 98.0 3.9E-05 8.4E-10 60.2 8.1 108 95-213 64-178 (245)
248 PF01269 Fibrillarin: Fibrilla 98.0 7.5E-05 1.6E-09 58.1 9.2 110 108-224 73-189 (229)
249 TIGR01444 fkbM_fam methyltrans 97.9 3.3E-05 7.1E-10 56.6 6.6 57 111-168 1-59 (143)
250 PF07091 FmrO: Ribosomal RNA m 97.9 7.7E-05 1.7E-09 59.2 8.9 105 108-217 105-211 (251)
251 KOG2187 tRNA uracil-5-methyltr 97.9 9.2E-05 2E-09 64.0 9.3 101 109-216 384-493 (534)
252 KOG2798 Putative trehalase [Ca 97.9 8.2E-05 1.8E-09 60.5 7.9 100 109-210 151-293 (369)
253 PRK10742 putative methyltransf 97.8 0.00015 3.3E-09 57.7 9.0 76 111-186 91-176 (250)
254 KOG3201 Uncharacterized conser 97.7 4E-05 8.7E-10 56.4 4.1 102 108-211 29-138 (201)
255 PF01861 DUF43: Protein of unk 97.7 0.0015 3.3E-08 51.6 13.0 111 101-216 37-151 (243)
256 PF01795 Methyltransf_5: MraW 97.7 0.00017 3.7E-09 59.3 7.9 73 106-180 18-99 (310)
257 COG0275 Predicted S-adenosylme 97.7 0.00098 2.1E-08 54.3 11.6 81 98-180 12-102 (314)
258 KOG4589 Cell division protein 97.7 0.00043 9.3E-09 52.3 8.7 100 107-218 68-189 (232)
259 PF01189 Nol1_Nop2_Fmu: NOL1/N 97.7 0.00024 5.2E-09 58.3 8.1 107 106-213 83-219 (283)
260 COG4798 Predicted methyltransf 97.6 0.00022 4.7E-09 54.2 6.1 112 106-217 46-170 (238)
261 PRK11524 putative methyltransf 97.6 0.00023 5E-09 58.5 6.6 59 93-151 193-251 (284)
262 PF11599 AviRa: RRNA methyltra 97.5 0.0012 2.7E-08 51.0 9.8 106 109-214 52-215 (246)
263 PF01555 N6_N4_Mtase: DNA meth 97.5 0.00021 4.5E-09 56.3 5.3 57 92-148 175-231 (231)
264 PRK13699 putative methylase; P 97.4 0.00042 9.2E-09 55.0 6.5 61 92-152 147-207 (227)
265 KOG1501 Arginine N-methyltrans 97.4 0.00035 7.6E-09 59.4 5.7 71 110-180 68-141 (636)
266 COG2384 Predicted SAM-dependen 97.4 0.003 6.6E-08 49.1 10.1 73 110-182 18-93 (226)
267 COG4627 Uncharacterized protei 97.4 8E-05 1.7E-09 54.4 1.4 48 169-216 42-89 (185)
268 PF02005 TRM: N2,N2-dimethylgu 97.4 0.00053 1.1E-08 58.4 6.5 98 109-213 50-154 (377)
269 PF04989 CmcI: Cephalosporin h 97.3 0.0011 2.4E-08 51.3 7.6 103 106-213 30-147 (206)
270 COG1889 NOP1 Fibrillarin-like 97.3 0.0043 9.2E-08 47.7 10.4 110 108-224 76-191 (231)
271 COG1064 AdhP Zn-dependent alco 97.3 0.0009 1.9E-08 55.8 7.4 95 106-216 164-262 (339)
272 KOG1562 Spermidine synthase [A 97.1 0.0026 5.7E-08 51.6 7.9 106 108-213 121-236 (337)
273 KOG2793 Putative N2,N2-dimethy 97.1 0.0033 7.1E-08 50.2 8.4 103 109-214 87-200 (248)
274 COG5459 Predicted rRNA methyla 97.1 0.00066 1.4E-08 56.2 4.4 110 106-216 111-228 (484)
275 COG0286 HsdM Type I restrictio 97.1 0.0078 1.7E-07 53.3 11.0 120 94-213 171-326 (489)
276 KOG2671 Putative RNA methylase 97.0 0.0012 2.5E-08 54.6 5.0 108 106-213 206-354 (421)
277 PF03492 Methyltransf_7: SAM d 97.0 0.0082 1.8E-07 50.5 9.9 108 110-218 18-188 (334)
278 KOG1227 Putative methyltransfe 96.9 0.00051 1.1E-08 55.6 2.3 99 109-213 195-297 (351)
279 TIGR00027 mthyl_TIGR00027 meth 96.9 0.03 6.4E-07 45.4 12.4 106 110-216 83-200 (260)
280 PF04445 SAM_MT: Putative SAM- 96.9 0.0013 2.9E-08 51.9 4.3 77 110-186 77-163 (234)
281 PHA01634 hypothetical protein 96.9 0.003 6.6E-08 44.8 5.5 49 106-154 26-75 (156)
282 COG3129 Predicted SAM-dependen 96.9 0.0056 1.2E-07 48.0 7.3 91 96-187 62-166 (292)
283 PLN02668 indole-3-acetate carb 96.8 0.011 2.3E-07 50.5 9.3 109 109-217 64-241 (386)
284 PRK09424 pntA NAD(P) transhydr 96.8 0.012 2.6E-07 52.1 9.8 98 107-215 163-287 (509)
285 KOG1122 tRNA and rRNA cytosine 96.7 0.016 3.4E-07 49.4 9.3 108 106-215 239-373 (460)
286 KOG0822 Protein kinase inhibit 96.7 0.0048 1E-07 53.8 6.4 104 110-214 369-479 (649)
287 COG1565 Uncharacterized conser 96.7 0.013 2.8E-07 49.1 8.5 85 100-188 68-163 (370)
288 COG1063 Tdh Threonine dehydrog 96.7 0.0049 1.1E-07 52.2 6.3 99 108-218 168-274 (350)
289 KOG1253 tRNA methyltransferase 96.5 0.0018 3.8E-08 56.0 2.3 100 107-213 108-216 (525)
290 PF07757 AdoMet_MTase: Predict 96.5 0.0017 3.8E-08 44.6 1.8 33 109-141 59-91 (112)
291 PF03141 Methyltransf_29: Puta 96.4 0.0051 1.1E-07 53.5 5.0 95 110-213 367-467 (506)
292 PRK09880 L-idonate 5-dehydroge 96.4 0.023 5E-07 47.8 8.6 97 107-215 168-268 (343)
293 cd00315 Cyt_C5_DNA_methylase C 96.3 0.013 2.8E-07 47.9 6.5 65 111-182 2-70 (275)
294 PF02636 Methyltransf_28: Puta 96.2 0.033 7.1E-07 44.9 8.3 43 110-152 20-72 (252)
295 COG4301 Uncharacterized conser 96.2 0.071 1.5E-06 42.4 9.7 102 109-211 79-191 (321)
296 COG3510 CmcI Cephalosporin hyd 96.1 0.074 1.6E-06 40.7 8.9 106 106-219 67-186 (237)
297 PF06859 Bin3: Bicoid-interact 96.1 0.0041 8.8E-08 43.0 2.1 39 174-212 1-43 (110)
298 PF11312 DUF3115: Protein of u 96.0 0.016 3.4E-07 47.7 5.6 110 110-219 88-248 (315)
299 KOG1596 Fibrillarin and relate 96.0 0.03 6.6E-07 44.3 6.8 107 107-224 155-272 (317)
300 KOG0024 Sorbitol dehydrogenase 95.9 0.023 4.9E-07 46.9 5.9 99 107-218 168-278 (354)
301 PF05711 TylF: Macrocin-O-meth 95.8 0.037 8.1E-07 44.4 6.9 104 109-216 75-215 (248)
302 KOG2920 Predicted methyltransf 95.8 0.0026 5.6E-08 51.4 0.2 107 106-214 114-235 (282)
303 COG1867 TRM1 N2,N2-dimethylgua 95.8 0.03 6.5E-07 47.0 6.5 98 109-213 53-154 (380)
304 cd08283 FDH_like_1 Glutathione 95.8 0.026 5.7E-07 48.4 6.4 103 108-214 184-307 (386)
305 PF00107 ADH_zinc_N: Zinc-bind 95.7 0.0056 1.2E-07 43.7 1.7 84 118-216 1-92 (130)
306 PF11899 DUF3419: Protein of u 95.7 0.026 5.7E-07 48.2 5.9 60 157-216 275-337 (380)
307 cd08230 glucose_DH Glucose deh 95.7 0.054 1.2E-06 45.8 7.7 97 107-216 171-272 (355)
308 PF03269 DUF268: Caenorhabditi 95.6 0.0065 1.4E-07 44.9 1.6 95 110-212 3-110 (177)
309 COG1568 Predicted methyltransf 95.6 0.13 2.9E-06 41.6 8.9 105 104-213 148-260 (354)
310 KOG1099 SAM-dependent methyltr 95.5 0.037 7.9E-07 43.5 5.3 90 110-211 43-161 (294)
311 cd08254 hydroxyacyl_CoA_DH 6-h 95.4 0.03 6.4E-07 46.6 5.3 92 108-215 165-265 (338)
312 PF02254 TrkA_N: TrkA-N domain 95.4 0.2 4.4E-06 34.8 8.8 87 117-216 4-99 (116)
313 COG3315 O-Methyltransferase in 95.3 0.28 6.1E-06 40.6 10.4 103 110-213 94-209 (297)
314 TIGR01202 bchC 2-desacetyl-2-h 95.2 0.1 2.2E-06 43.3 7.7 87 108-215 144-233 (308)
315 KOG2912 Predicted DNA methylas 95.1 0.085 1.8E-06 43.5 6.5 90 95-184 86-188 (419)
316 PTZ00357 methyltransferase; Pr 95.0 0.093 2E-06 47.7 7.2 94 111-208 703-830 (1072)
317 cd08239 THR_DH_like L-threonin 95.0 0.056 1.2E-06 45.2 5.7 97 107-215 162-264 (339)
318 KOG2078 tRNA modification enzy 95.0 0.03 6.5E-07 47.8 3.9 65 105-169 246-311 (495)
319 PF10237 N6-adenineMlase: Prob 95.0 0.46 1E-05 35.6 9.8 106 95-213 12-123 (162)
320 cd05188 MDR Medium chain reduc 94.9 0.11 2.4E-06 41.5 7.1 95 107-216 133-235 (271)
321 cd08237 ribitol-5-phosphate_DH 94.9 0.14 3.1E-06 43.0 7.9 93 107-215 162-258 (341)
322 cd00401 AdoHcyase S-adenosyl-L 94.9 0.091 2E-06 45.4 6.6 97 98-214 189-290 (413)
323 TIGR03366 HpnZ_proposed putati 94.8 0.066 1.4E-06 43.7 5.5 97 107-215 119-220 (280)
324 KOG2198 tRNA cytosine-5-methyl 94.8 0.31 6.7E-06 41.1 9.2 110 106-216 153-299 (375)
325 TIGR02822 adh_fam_2 zinc-bindi 94.7 0.3 6.5E-06 40.9 9.2 91 107-215 164-256 (329)
326 TIGR03451 mycoS_dep_FDH mycoth 94.6 0.056 1.2E-06 45.8 4.7 97 107-215 175-278 (358)
327 PRK05225 ketol-acid reductoiso 94.5 0.058 1.3E-06 46.9 4.5 105 106-228 33-147 (487)
328 COG1255 Uncharacterized protei 94.5 0.37 8E-06 33.7 7.5 87 110-215 15-104 (129)
329 PRK01747 mnmC bifunctional tRN 94.4 0.19 4.1E-06 46.4 8.1 104 110-213 59-206 (662)
330 KOG3924 Putative protein methy 94.4 0.11 2.5E-06 44.0 5.8 111 96-211 179-306 (419)
331 COG0604 Qor NADPH:quinone redu 94.4 0.16 3.5E-06 42.6 6.9 96 108-216 142-244 (326)
332 cd08281 liver_ADH_like1 Zinc-d 94.3 0.086 1.9E-06 44.9 5.3 97 107-215 190-292 (371)
333 PRK10309 galactitol-1-phosphat 94.2 0.11 2.4E-06 43.7 5.6 95 107-216 159-263 (347)
334 PRK05786 fabG 3-ketoacyl-(acyl 94.1 1.2 2.6E-05 35.0 11.1 104 108-214 4-136 (238)
335 PF07279 DUF1442: Protein of u 94.0 1.4 3E-05 34.5 10.6 112 107-225 40-160 (218)
336 PRK05708 2-dehydropantoate 2-r 93.7 0.83 1.8E-05 37.9 9.9 100 110-215 3-106 (305)
337 TIGR00675 dcm DNA-methyltransf 93.6 0.2 4.3E-06 41.9 5.9 63 112-181 1-66 (315)
338 PF00145 DNA_methylase: C-5 cy 93.5 0.11 2.3E-06 43.3 4.3 62 111-181 2-68 (335)
339 TIGR00561 pntA NAD(P) transhyd 93.5 0.51 1.1E-05 42.0 8.6 97 107-213 162-284 (511)
340 PRK11524 putative methyltransf 93.5 0.13 2.9E-06 42.2 4.7 55 158-212 8-79 (284)
341 PRK05854 short chain dehydroge 93.5 1.4 3.1E-05 36.5 10.9 78 107-184 12-103 (313)
342 COG0863 DNA modification methy 93.5 0.27 5.8E-06 40.4 6.5 60 94-153 208-267 (302)
343 PF10354 DUF2431: Domain of un 93.4 0.63 1.4E-05 35.0 7.9 99 115-216 3-128 (166)
344 PF04072 LCM: Leucine carboxyl 93.3 0.37 8E-06 36.8 6.7 89 110-199 80-182 (183)
345 COG0270 Dcm Site-specific DNA 93.1 0.28 6E-06 41.2 6.1 68 110-183 4-76 (328)
346 PF03686 UPF0146: Uncharacteri 93.1 0.21 4.6E-06 35.6 4.5 91 109-218 14-107 (127)
347 KOG2651 rRNA adenine N-6-methy 93.1 0.17 3.6E-06 42.9 4.6 39 110-148 155-194 (476)
348 PLN02740 Alcohol dehydrogenase 92.9 0.37 8E-06 41.2 6.7 94 107-216 197-303 (381)
349 cd08232 idonate-5-DH L-idonate 92.6 0.47 1E-05 39.6 7.0 93 107-214 164-263 (339)
350 PF02737 3HCDH_N: 3-hydroxyacy 92.6 0.5 1.1E-05 36.0 6.4 98 111-215 1-116 (180)
351 TIGR03201 dearomat_had 6-hydro 92.6 0.58 1.2E-05 39.4 7.4 98 107-216 165-275 (349)
352 cd08261 Zn_ADH7 Alcohol dehydr 92.4 0.24 5.1E-06 41.4 4.8 96 107-215 158-260 (337)
353 PRK06522 2-dehydropantoate 2-r 92.2 1.3 2.7E-05 36.5 8.9 98 111-214 2-101 (304)
354 PRK08324 short chain dehydroge 92.2 1.9 4.1E-05 40.0 10.8 73 108-183 421-507 (681)
355 PRK07417 arogenate dehydrogena 92.2 0.94 2E-05 37.1 8.0 84 111-209 2-87 (279)
356 PRK07814 short chain dehydroge 92.1 3.2 6.8E-05 33.3 10.9 75 107-183 8-96 (263)
357 PRK07109 short chain dehydroge 91.9 3.3 7.1E-05 34.8 11.2 75 107-183 6-94 (334)
358 PRK07576 short chain dehydroge 91.9 3.2 6.9E-05 33.4 10.7 74 107-182 7-94 (264)
359 TIGR00936 ahcY adenosylhomocys 91.8 0.66 1.4E-05 40.1 6.9 90 106-215 192-284 (406)
360 cd08285 NADP_ADH NADP(H)-depen 91.8 0.36 7.9E-06 40.6 5.3 96 107-214 165-267 (351)
361 cd05278 FDH_like Formaldehyde 91.8 0.33 7.1E-06 40.6 5.0 95 108-214 167-268 (347)
362 PRK05476 S-adenosyl-L-homocyst 91.7 0.6 1.3E-05 40.6 6.6 91 106-216 209-302 (425)
363 TIGR02825 B4_12hDH leukotriene 91.7 0.66 1.4E-05 38.5 6.7 92 107-214 137-238 (325)
364 PRK08267 short chain dehydroge 91.6 3.3 7.2E-05 33.0 10.5 71 110-184 2-87 (260)
365 PRK08265 short chain dehydroge 91.6 4.6 0.0001 32.3 11.3 71 108-183 5-89 (261)
366 PRK06701 short chain dehydroge 91.5 2.8 6.1E-05 34.3 10.2 106 106-213 43-181 (290)
367 cd08234 threonine_DH_like L-th 91.5 1.6 3.5E-05 36.2 8.8 95 107-216 158-260 (334)
368 cd08233 butanediol_DH_like (2R 91.4 0.36 7.9E-06 40.6 4.9 97 107-215 171-274 (351)
369 cd08236 sugar_DH NAD(P)-depend 91.4 0.44 9.6E-06 39.8 5.4 94 107-215 158-260 (343)
370 PRK06139 short chain dehydroge 91.4 3.4 7.5E-05 34.7 10.7 75 107-183 5-93 (330)
371 cd05285 sorbitol_DH Sorbitol d 91.3 0.54 1.2E-05 39.4 5.9 93 107-214 161-266 (343)
372 PRK13699 putative methylase; P 91.3 0.44 9.5E-06 37.8 5.0 53 160-212 3-71 (227)
373 cd05281 TDH Threonine dehydrog 91.3 0.61 1.3E-05 39.0 6.1 96 107-214 162-263 (341)
374 PLN03154 putative allyl alcoho 91.3 1.1 2.4E-05 37.8 7.7 94 107-215 157-260 (348)
375 PRK07533 enoyl-(acyl carrier p 91.1 5.1 0.00011 32.1 11.1 104 107-213 8-148 (258)
376 PRK05872 short chain dehydroge 91.1 4.6 0.0001 33.1 11.1 75 107-184 7-95 (296)
377 PRK08217 fabG 3-ketoacyl-(acyl 91.1 5 0.00011 31.6 11.0 75 107-183 3-91 (253)
378 PRK05875 short chain dehydroge 91.1 4.6 9.9E-05 32.5 10.9 77 107-183 5-95 (276)
379 COG0287 TyrA Prephenate dehydr 91.0 1.2 2.5E-05 36.6 7.2 87 110-209 4-94 (279)
380 PRK03659 glutathione-regulated 90.9 0.55 1.2E-05 42.9 5.8 95 110-217 401-502 (601)
381 cd08255 2-desacetyl-2-hydroxye 90.8 1.9 4E-05 34.8 8.4 93 107-214 96-191 (277)
382 PRK03562 glutathione-regulated 90.8 2.6 5.6E-05 38.8 10.0 95 109-216 400-501 (621)
383 PRK07806 short chain dehydroge 90.7 4.9 0.00011 31.7 10.6 103 108-212 5-133 (248)
384 PRK06079 enoyl-(acyl carrier p 90.7 6.4 0.00014 31.4 11.3 102 107-213 5-143 (252)
385 COG2933 Predicted SAM-dependen 90.6 1 2.2E-05 36.4 6.2 66 107-180 210-276 (358)
386 PRK12939 short chain dehydroge 90.6 3.5 7.7E-05 32.4 9.7 73 108-183 6-93 (250)
387 TIGR02818 adh_III_F_hyde S-(hy 90.5 0.52 1.1E-05 40.1 5.0 97 107-215 184-289 (368)
388 PLN02494 adenosylhomocysteinas 90.4 0.93 2E-05 39.9 6.4 98 98-214 241-342 (477)
389 TIGR00497 hsdM type I restrict 90.4 3.8 8.1E-05 36.6 10.5 105 108-212 217-354 (501)
390 PLN02827 Alcohol dehydrogenase 90.4 0.51 1.1E-05 40.4 4.9 93 107-215 192-297 (378)
391 PRK07066 3-hydroxybutyryl-CoA 90.3 1.2 2.6E-05 37.3 6.8 97 110-212 8-118 (321)
392 cd08245 CAD Cinnamyl alcohol d 90.2 1.5 3.2E-05 36.4 7.4 93 107-214 161-257 (330)
393 PRK08085 gluconate 5-dehydroge 90.1 8.1 0.00018 30.6 11.6 75 107-183 7-95 (254)
394 TIGR02819 fdhA_non_GSH formald 90.0 0.97 2.1E-05 38.9 6.3 102 107-215 184-301 (393)
395 KOG2352 Predicted spermine/spe 89.9 1.2 2.6E-05 39.1 6.6 108 109-217 296-420 (482)
396 PRK07984 enoyl-(acyl carrier p 89.8 8.9 0.00019 30.9 11.5 74 108-184 5-94 (262)
397 PRK09496 trkA potassium transp 89.8 3.5 7.6E-05 36.0 9.8 96 107-216 229-333 (453)
398 PLN02586 probable cinnamyl alc 89.8 1.8 3.8E-05 36.8 7.7 92 108-215 183-280 (360)
399 PRK07985 oxidoreductase; Provi 89.6 7.5 0.00016 31.9 11.1 105 107-213 47-185 (294)
400 cd08293 PTGR2 Prostaglandin re 89.6 1.2 2.7E-05 37.2 6.5 89 110-213 156-254 (345)
401 PRK06125 short chain dehydroge 89.6 8.2 0.00018 30.7 11.1 76 107-183 5-90 (259)
402 cd08231 MDR_TM0436_like Hypoth 89.5 1 2.2E-05 38.0 6.0 92 108-214 177-281 (361)
403 KOG1201 Hydroxysteroid 17-beta 89.5 2.4 5.2E-05 34.9 7.7 75 107-184 36-124 (300)
404 PRK10458 DNA cytosine methylas 89.4 1.6 3.4E-05 38.6 7.1 56 110-168 89-145 (467)
405 TIGR00518 alaDH alanine dehydr 89.4 0.94 2E-05 38.8 5.7 105 107-218 165-272 (370)
406 KOG2539 Mitochondrial/chloropl 89.3 2.4 5.1E-05 37.1 7.9 106 109-215 201-317 (491)
407 PF02086 MethyltransfD12: D12 89.2 0.94 2E-05 36.4 5.4 51 98-148 9-60 (260)
408 PRK07502 cyclohexadienyl dehyd 89.1 2.5 5.5E-05 35.0 8.0 87 110-210 7-97 (307)
409 cd08294 leukotriene_B4_DH_like 89.1 0.93 2E-05 37.5 5.4 92 107-214 142-242 (329)
410 PRK10669 putative cation:proto 89.0 0.94 2E-05 41.0 5.7 92 110-214 418-516 (558)
411 PRK05396 tdh L-threonine 3-deh 89.0 1.1 2.3E-05 37.5 5.7 95 107-216 162-266 (341)
412 cd08242 MDR_like Medium chain 89.0 3.5 7.7E-05 33.9 8.8 90 107-213 154-245 (319)
413 PRK05808 3-hydroxybutyryl-CoA 89.0 3.4 7.5E-05 33.7 8.6 94 111-211 5-116 (282)
414 PRK08293 3-hydroxybutyryl-CoA 88.9 2.1 4.5E-05 35.1 7.3 96 110-211 4-118 (287)
415 COG5379 BtaA S-adenosylmethion 88.8 1.1 2.3E-05 36.9 5.2 77 134-216 290-369 (414)
416 PRK09260 3-hydroxybutyryl-CoA 88.8 1.9 4.1E-05 35.4 7.0 95 111-211 3-115 (288)
417 PRK07063 short chain dehydroge 88.7 2.6 5.6E-05 33.6 7.7 77 107-183 5-95 (260)
418 PRK13403 ketol-acid reductoiso 88.7 1.7 3.7E-05 36.4 6.5 106 106-228 13-122 (335)
419 KOG2918 Carboxymethyl transfer 88.5 13 0.00027 31.0 11.1 119 96-216 76-230 (335)
420 PRK08594 enoyl-(acyl carrier p 88.5 9.5 0.00021 30.5 10.8 103 107-213 5-147 (257)
421 cd08277 liver_alcohol_DH_like 88.5 1.1 2.5E-05 37.9 5.7 97 107-216 183-289 (365)
422 TIGR00692 tdh L-threonine 3-de 88.5 0.92 2E-05 37.9 5.0 97 107-215 160-263 (340)
423 PRK06124 gluconate 5-dehydroge 88.4 2.5 5.4E-05 33.6 7.3 76 106-183 8-97 (256)
424 PRK14620 NAD(P)H-dependent gly 88.3 4.6 9.9E-05 33.7 9.1 99 111-216 2-109 (326)
425 KOG1208 Dehydrogenases with di 88.3 8.8 0.00019 32.1 10.5 80 106-185 32-125 (314)
426 cd08278 benzyl_alcohol_DH Benz 88.3 0.91 2E-05 38.5 4.9 91 108-214 186-286 (365)
427 PRK06500 short chain dehydroge 88.3 8.9 0.00019 30.1 10.4 71 108-183 5-89 (249)
428 PRK09496 trkA potassium transp 88.1 9.5 0.00021 33.3 11.3 91 111-215 2-101 (453)
429 PRK06505 enoyl-(acyl carrier p 88.1 11 0.00025 30.4 11.1 75 107-184 5-95 (271)
430 PRK08306 dipicolinate synthase 88.0 3 6.5E-05 34.5 7.6 92 107-216 150-244 (296)
431 COG2910 Putative NADH-flavin r 88.0 1.9 4.2E-05 33.0 5.8 86 117-212 7-103 (211)
432 PRK06035 3-hydroxyacyl-CoA deh 87.9 3.5 7.6E-05 33.9 8.0 95 110-211 4-119 (291)
433 PRK06940 short chain dehydroge 87.9 12 0.00025 30.4 11.0 97 111-211 4-123 (275)
434 COG0686 Ald Alanine dehydrogen 87.8 1.7 3.8E-05 36.0 5.9 96 108-210 167-265 (371)
435 PRK12921 2-dehydropantoate 2-r 87.8 3.1 6.6E-05 34.3 7.7 96 111-213 2-102 (305)
436 COG1748 LYS9 Saccharopine dehy 87.8 2.5 5.5E-05 36.3 7.1 69 110-183 2-77 (389)
437 cd08300 alcohol_DH_class_III c 87.7 1 2.3E-05 38.2 4.9 97 107-215 185-290 (368)
438 PF05050 Methyltransf_21: Meth 87.7 1.4 3E-05 32.4 5.1 36 114-149 1-42 (167)
439 cd05284 arabinose_DH_like D-ar 87.7 1.2 2.6E-05 37.1 5.2 95 108-215 167-268 (340)
440 PRK12744 short chain dehydroge 87.6 12 0.00027 29.6 11.3 102 108-211 7-143 (257)
441 PTZ00075 Adenosylhomocysteinas 87.6 1.4 3E-05 38.9 5.6 90 106-215 251-343 (476)
442 cd08298 CAD2 Cinnamyl alcohol 87.4 3.5 7.5E-05 34.1 7.9 90 107-214 166-257 (329)
443 PF02558 ApbA: Ketopantoate re 87.4 1.7 3.8E-05 31.6 5.4 98 112-215 1-103 (151)
444 cd08295 double_bond_reductase_ 87.3 3.2 6.9E-05 34.7 7.6 92 107-214 150-252 (338)
445 PLN02514 cinnamyl-alcohol dehy 87.2 4 8.8E-05 34.5 8.2 95 108-215 180-277 (357)
446 cd08279 Zn_ADH_class_III Class 87.0 1.4 3.1E-05 37.2 5.3 92 108-214 182-283 (363)
447 PRK06128 oxidoreductase; Provi 87.0 8.4 0.00018 31.6 9.8 104 107-212 53-190 (300)
448 cd08291 ETR_like_1 2-enoyl thi 86.9 1.1 2.3E-05 37.2 4.5 92 108-215 142-244 (324)
449 PRK07819 3-hydroxybutyryl-CoA 86.8 7.1 0.00015 32.1 9.1 97 110-213 6-121 (286)
450 PRK07035 short chain dehydroge 86.7 3.9 8.5E-05 32.4 7.5 75 107-183 6-94 (252)
451 PRK05867 short chain dehydroge 86.6 3.7 8E-05 32.6 7.3 76 107-184 7-96 (253)
452 PRK06249 2-dehydropantoate 2-r 86.5 3.9 8.5E-05 34.0 7.6 97 110-213 6-106 (313)
453 cd08296 CAD_like Cinnamyl alco 86.5 2.5 5.3E-05 35.3 6.5 93 108-215 163-261 (333)
454 KOG0022 Alcohol dehydrogenase, 86.4 3.6 7.8E-05 34.3 6.9 98 107-219 191-300 (375)
455 cd08301 alcohol_DH_plants Plan 86.2 1.2 2.7E-05 37.7 4.6 95 107-216 186-292 (369)
456 PRK08415 enoyl-(acyl carrier p 86.1 17 0.00036 29.5 11.8 103 108-213 4-143 (274)
457 PRK07889 enoyl-(acyl carrier p 86.0 15 0.00033 29.3 10.7 103 107-214 5-146 (256)
458 cd08286 FDH_like_ADH2 formalde 86.0 1.7 3.8E-05 36.3 5.3 94 108-213 166-266 (345)
459 PRK12743 oxidoreductase; Provi 85.9 16 0.00034 29.1 10.7 72 110-183 3-89 (256)
460 PRK06172 short chain dehydroge 85.9 4.4 9.6E-05 32.1 7.5 76 107-184 5-94 (253)
461 PRK07890 short chain dehydroge 85.8 4.4 9.5E-05 32.1 7.4 75 108-184 4-92 (258)
462 PRK06484 short chain dehydroge 85.8 11 0.00024 33.5 10.6 72 108-184 4-89 (520)
463 PRK07062 short chain dehydroge 85.8 4.5 9.8E-05 32.3 7.5 78 107-184 6-97 (265)
464 COG1062 AdhC Zn-dependent alco 85.8 3.5 7.5E-05 34.7 6.7 98 107-219 184-291 (366)
465 PRK07097 gluconate 5-dehydroge 85.7 4.2 9.2E-05 32.6 7.3 77 106-184 7-97 (265)
466 COG0569 TrkA K+ transport syst 85.7 3 6.4E-05 33.1 6.2 63 111-180 2-72 (225)
467 COG4017 Uncharacterized protei 85.7 3.3 7.1E-05 31.9 6.0 72 107-190 43-115 (254)
468 PLN02178 cinnamyl-alcohol dehy 85.6 2.3 4.9E-05 36.4 5.9 91 108-215 178-275 (375)
469 PRK07530 3-hydroxybutyryl-CoA 85.5 9.3 0.0002 31.3 9.3 95 110-211 5-117 (292)
470 TIGR02437 FadB fatty oxidation 85.5 3.8 8.2E-05 38.3 7.6 97 110-213 314-428 (714)
471 PRK11064 wecC UDP-N-acetyl-D-m 85.5 2.4 5.1E-05 36.9 6.0 95 110-211 4-117 (415)
472 cd08263 Zn_ADH10 Alcohol dehyd 85.5 1.6 3.6E-05 36.9 5.0 93 107-214 186-288 (367)
473 PRK08159 enoyl-(acyl carrier p 85.4 18 0.00039 29.3 11.5 104 108-214 9-149 (272)
474 PRK08339 short chain dehydroge 85.3 5.5 0.00012 32.0 7.8 76 107-183 6-94 (263)
475 PRK06484 short chain dehydroge 85.2 16 0.00035 32.5 11.3 101 108-213 268-400 (520)
476 PRK06182 short chain dehydroge 85.0 13 0.00028 29.9 9.8 69 109-185 3-85 (273)
477 PRK06914 short chain dehydroge 85.0 5.8 0.00013 32.0 7.8 75 109-183 3-90 (280)
478 KOG0821 Predicted ribosomal RN 84.9 2.7 5.9E-05 33.1 5.4 68 99-168 40-109 (326)
479 TIGR02441 fa_ox_alpha_mit fatt 84.9 3.1 6.8E-05 39.0 6.8 98 110-214 336-451 (737)
480 PRK11730 fadB multifunctional 84.9 4.6 9.9E-05 37.8 7.9 97 110-213 314-428 (715)
481 PRK07677 short chain dehydroge 84.8 4.9 0.00011 31.9 7.2 71 110-182 2-86 (252)
482 COG1893 ApbA Ketopantoate redu 84.8 5.9 0.00013 33.0 7.8 91 110-214 1-102 (307)
483 PLN02545 3-hydroxybutyryl-CoA 84.8 2.9 6.3E-05 34.4 6.0 92 110-210 5-116 (295)
484 COG0623 FabI Enoyl-[acyl-carri 84.7 18 0.0004 28.8 10.2 111 106-219 3-150 (259)
485 PRK00094 gpsA NAD(P)H-dependen 84.5 6.9 0.00015 32.5 8.2 94 111-212 3-104 (325)
486 PF06460 NSP13: Coronavirus NS 84.5 4.4 9.5E-05 32.7 6.4 90 109-211 62-167 (299)
487 PRK11154 fadJ multifunctional 84.5 5.9 0.00013 37.1 8.4 97 110-213 310-425 (708)
488 cd08240 6_hydroxyhexanoate_dh_ 84.4 2.3 5E-05 35.6 5.4 91 108-214 175-275 (350)
489 PF03514 GRAS: GRAS domain fam 84.3 10 0.00022 32.5 9.2 115 108-226 110-254 (374)
490 PRK09072 short chain dehydroge 84.2 7.1 0.00015 31.2 8.0 74 108-184 4-90 (263)
491 KOG0023 Alcohol dehydrogenase, 84.1 9.8 0.00021 31.9 8.5 101 107-217 180-283 (360)
492 PRK12742 oxidoreductase; Provi 83.9 18 0.0004 28.1 12.0 100 107-213 4-131 (237)
493 KOG1197 Predicted quinone oxid 83.8 3.7 7.9E-05 33.3 5.8 96 107-215 145-247 (336)
494 PRK06130 3-hydroxybutyryl-CoA 83.8 4.8 0.0001 33.4 6.9 93 110-210 5-112 (311)
495 PRK08507 prephenate dehydrogen 83.8 5.2 0.00011 32.6 7.0 83 111-210 2-88 (275)
496 PRK09186 flagellin modificatio 83.8 6.3 0.00014 31.2 7.4 75 108-182 3-91 (256)
497 PRK05855 short chain dehydroge 83.8 16 0.00035 32.7 10.9 74 109-184 315-402 (582)
498 PF02826 2-Hacid_dh_C: D-isome 83.7 0.93 2E-05 34.4 2.4 39 106-144 33-73 (178)
499 PRK10083 putative oxidoreducta 83.7 3.1 6.7E-05 34.6 5.8 97 107-215 159-261 (339)
500 COG2130 Putative NADP-dependen 83.7 3.7 8E-05 34.0 5.9 96 119-226 163-262 (340)
No 1
>PRK13256 thiopurine S-methyltransferase; Reviewed
Probab=99.94 E-value=9.7e-26 Score=176.41 Aligned_cols=159 Identities=19% Similarity=0.369 Sum_probs=137.1
Q ss_pred ccccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhc
Q 026903 73 ESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS 151 (231)
Q Consensus 73 ~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~ 151 (231)
...++|++.|+....+|+...+++.+.+++..... ++.+||++|||.|..+..|++.|+.|+|+|+|+.+++.+.+...
T Consensus 7 ~~~~fW~~rw~~~~~~f~~~~pnp~L~~~~~~l~~~~~~rvLvPgCGkg~D~~~LA~~G~~V~GvDlS~~Ai~~~~~e~~ 86 (226)
T PRK13256 7 NNNQYWLDRWQNDDVGFCQESPNEFLVKHFSKLNINDSSVCLIPMCGCSIDMLFFLSKGVKVIGIELSEKAVLSFFSQNT 86 (226)
T ss_pred CCHHHHHHHHhcCCCCCccCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHhCCCcEEEEecCHHHHHHHHHHcC
Confidence 45678999999999999999999999888887654 45799999999999999999999999999999999999866321
Q ss_pred c-----------CCCCCceEEEEccCCCCCC----CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 152 S-----------LPNAKFVSFLKADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 152 ~-----------~~~~~~i~~~~~d~~~~~~----~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
. .....+++++++|++++.+ .+.||+|+...++++++++.+.++.+.+.++|+|||.++++.+..
T Consensus 87 ~~~~~~~~~~~~~~~~~~i~~~~gD~f~l~~~~~~~~~fD~VyDra~~~Alpp~~R~~Y~~~l~~lL~pgg~llll~~~~ 166 (226)
T PRK13256 87 INYEVIHGNDYKLYKGDDIEIYVADIFNLPKIANNLPVFDIWYDRGAYIALPNDLRTNYAKMMLEVCSNNTQILLLVMEH 166 (226)
T ss_pred CCcceecccccceeccCceEEEEccCcCCCccccccCCcCeeeeehhHhcCCHHHHHHHHHHHHHHhCCCcEEEEEEEec
Confidence 0 0112479999999999643 258999999999999999999999999999999999999999877
Q ss_pred CCCCCCCCCCCCCCC
Q 026903 217 SDHVGGPPYKVSVSE 231 (231)
Q Consensus 217 ~~~~~~~~~~~~~~~ 231 (231)
+...+||||.|+++|
T Consensus 167 ~~~~~GPPf~v~~~e 181 (226)
T PRK13256 167 DKKSQTPPYSVTQAE 181 (226)
T ss_pred CCCCCCCCCcCCHHH
Confidence 666799999998764
No 2
>TIGR03840 TMPT_Se_Te thiopurine S-methyltransferase, Se/Te detoxification family. Members of this family are thiopurine S-methyltransferase from a branch in which at least some member proteins can perform selenium methylation as a means to detoxify selenium, or perform a related detoxification of tellurium. Note that the EC number definition does not specify a particular thiopurine, but rather represents a class of activity.
Probab=99.93 E-value=3.5e-25 Score=173.35 Aligned_cols=156 Identities=25% Similarity=0.466 Sum_probs=129.8
Q ss_pred cchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-
Q 026903 76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL- 153 (231)
Q Consensus 76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~- 153 (231)
++|++.|.....+|+...+++.+.+++..... ++.+|||+|||.|+++..|+++|..|+|+|+|+.+++.+.......
T Consensus 1 ~~Wd~ry~~~~~~w~~~~p~~~l~~~~~~l~~~~~~rvLd~GCG~G~da~~LA~~G~~V~gvD~S~~Ai~~~~~~~~~~~ 80 (213)
T TIGR03840 1 EFWHERWQEGQIGFHQSEVNPLLVKHWPALGLPAGARVFVPLCGKSLDLAWLAEQGHRVLGVELSEIAVEQFFAENGLTP 80 (213)
T ss_pred ChHHHHHhcCCCCCccCCCCHHHHHHHHhhCCCCCCeEEEeCCCchhHHHHHHhCCCeEEEEeCCHHHHHHHHHHcCCCc
Confidence 47999999999999989999999998886533 5589999999999999999999999999999999999864422110
Q ss_pred ----------CCCCceEEEEccCCCCCC--CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC-CCC
Q 026903 154 ----------PNAKFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS-DHV 220 (231)
Q Consensus 154 ----------~~~~~i~~~~~d~~~~~~--~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~-~~~ 220 (231)
....+++++++|++++.. .++||.|+...+++|++++.+..+++.+.++|||||++++.+|... .+.
T Consensus 81 ~~~~~~~~~~~~~~~v~~~~~D~~~~~~~~~~~fD~i~D~~~~~~l~~~~R~~~~~~l~~lLkpgG~~ll~~~~~~~~~~ 160 (213)
T TIGR03840 81 TVTQQGEFTRYRAGNIEIFCGDFFALTAADLGPVDAVYDRAALIALPEEMRQRYAAHLLALLPPGARQLLITLDYDQSEM 160 (213)
T ss_pred ceeccccceeeecCceEEEEccCCCCCcccCCCcCEEEechhhccCCHHHHHHHHHHHHHHcCCCCeEEEEEEEcCCCCC
Confidence 012469999999999553 3579999999999999999999999999999999999888777553 445
Q ss_pred CCCCCCCCCCC
Q 026903 221 GGPPYKVSVSE 231 (231)
Q Consensus 221 ~~~~~~~~~~~ 231 (231)
.||||.++.+|
T Consensus 161 ~gpp~~~~~~e 171 (213)
T TIGR03840 161 AGPPFSVSPAE 171 (213)
T ss_pred CCcCCCCCHHH
Confidence 78999887654
No 3
>PRK13255 thiopurine S-methyltransferase; Reviewed
Probab=99.92 E-value=3.6e-24 Score=168.19 Aligned_cols=157 Identities=24% Similarity=0.420 Sum_probs=128.4
Q ss_pred ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC
Q 026903 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL 153 (231)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~ 153 (231)
.++|++.|.....+|+...+++.+.+++..... ++.+|||+|||.|..+..|+++|.+|+|+|+|+.+++.+.......
T Consensus 3 ~~~Wd~rw~~~~~~~~~~~p~~~L~~~~~~~~~~~~~rvL~~gCG~G~da~~LA~~G~~V~avD~s~~Ai~~~~~~~~l~ 82 (218)
T PRK13255 3 PDFWHEKWAENQIGFHQEEVNPLLQKYWPALALPAGSRVLVPLCGKSLDMLWLAEQGHEVLGVELSELAVEQFFAENGLT 82 (218)
T ss_pred HhHHHHHHcCCCCCCCCCCCCHHHHHHHHhhCCCCCCeEEEeCCCChHhHHHHHhCCCeEEEEccCHHHHHHHHHHcCCC
Confidence 468999999999999989999999998875433 4579999999999999999999999999999999999874321110
Q ss_pred -----------CCCCceEEEEccCCCCCCC--CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc-CCCC
Q 026903 154 -----------PNAKFVSFLKADFFTWCPT--ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP-ISDH 219 (231)
Q Consensus 154 -----------~~~~~i~~~~~d~~~~~~~--~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~-~~~~ 219 (231)
....+|++.++|++++.+. ..||+|+...+++|++++.+.++++.+.++|+|||++++.++. ....
T Consensus 83 ~~~~~~~~~~~~~~~~v~~~~~D~~~l~~~~~~~fd~v~D~~~~~~l~~~~R~~~~~~l~~lL~pgG~~~l~~~~~~~~~ 162 (218)
T PRK13255 83 PQTRQSGEFEHYQAGEITIYCGDFFALTAADLADVDAVYDRAALIALPEEMRERYVQQLAALLPAGCRGLLVTLDYPQEE 162 (218)
T ss_pred ccccccccccccccCceEEEECcccCCCcccCCCeeEEEehHhHhhCCHHHHHHHHHHHHHHcCCCCeEEEEEEEeCCcc
Confidence 0135799999999996433 5899999999999999999999999999999999875554432 2344
Q ss_pred CCCCCCCCCCCC
Q 026903 220 VGGPPYKVSVSE 231 (231)
Q Consensus 220 ~~~~~~~~~~~~ 231 (231)
..||||.++.+|
T Consensus 163 ~~gPp~~~~~~e 174 (218)
T PRK13255 163 LAGPPFSVSDEE 174 (218)
T ss_pred CCCCCCCCCHHH
Confidence 688999887654
No 4
>PF05724 TPMT: Thiopurine S-methyltransferase (TPMT); InterPro: IPR008854 This family consists of thiopurine S-methyltransferase proteins from both eukaryotes and prokaryotes. Thiopurine S-methyltransferase (TPMT) is a cytosolic enzyme that catalyses S-methylation of aromatic and heterocyclic sulphydryl compounds, including anticancer and immunosuppressive thiopurines [].; GO: 0008119 thiopurine S-methyltransferase activity, 0008152 metabolic process, 0005737 cytoplasm; PDB: 1PJZ_A 2H11_A 2BZG_A 3LCC_A 3BGD_A 2GB4_A 3BGI_B.
Probab=99.92 E-value=7.8e-25 Score=171.61 Aligned_cols=156 Identities=46% Similarity=0.846 Sum_probs=120.4
Q ss_pred ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc-
Q 026903 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS- 152 (231)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~- 152 (231)
.++|++.|.....+|+...+++.+.+++..... ++.+||.+|||.|..+..|++.|.+|+|+|+|+.+++.+.+....
T Consensus 3 ~~~W~~~w~~~~~~w~~~~~~p~L~~~~~~l~~~~~~rvLvPgCG~g~D~~~La~~G~~VvGvDls~~Ai~~~~~e~~~~ 82 (218)
T PF05724_consen 3 PEFWEERWQEGQTPWDQGEPNPALVEYLDSLALKPGGRVLVPGCGKGYDMLWLAEQGHDVVGVDLSPTAIEQAFEENNLE 82 (218)
T ss_dssp HHHHHHHHHTT--TT--TTSTHHHHHHHHHHTTSTSEEEEETTTTTSCHHHHHHHTTEEEEEEES-HHHHHHHHHHCTTE
T ss_pred HHHHHHHHhcCCCCCCCCCCCHHHHHHHHhcCCCCCCeEEEeCCCChHHHHHHHHCCCeEEEEecCHHHHHHHHHHhccC
Confidence 468999999999999999999999999998544 346999999999999999999999999999999999998442211
Q ss_pred -C----C-----CCCceEEEEccCCCCCCCC--ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcE--EEEEEccCCC
Q 026903 153 -L----P-----NAKFVSFLKADFFTWCPTE--LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE--LITLMFPISD 218 (231)
Q Consensus 153 -~----~-----~~~~i~~~~~d~~~~~~~~--~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~--l~~~~~~~~~ 218 (231)
. . ...+|++.++|++++.+.. +||+|+...+++.++++.+.++.+.+.++|+|||. |+...|....
T Consensus 83 ~~~~~~~~~~~~~~~~i~~~~gDfF~l~~~~~g~fD~iyDr~~l~Alpp~~R~~Ya~~l~~ll~p~g~~lLi~l~~~~~~ 162 (218)
T PF05724_consen 83 PTVTSVGGFKRYQAGRITIYCGDFFELPPEDVGKFDLIYDRTFLCALPPEMRERYAQQLASLLKPGGRGLLITLEYPQGE 162 (218)
T ss_dssp EECTTCTTEEEETTSSEEEEES-TTTGGGSCHHSEEEEEECSSTTTS-GGGHHHHHHHHHHCEEEEEEEEEEEEES-CSC
T ss_pred CCcccccceeeecCCceEEEEcccccCChhhcCCceEEEEecccccCCHHHHHHHHHHHHHHhCCCCcEEEEEEEcCCcC
Confidence 0 0 1246899999999965443 79999999999999999999999999999999999 5556666554
Q ss_pred CCCCCCCCCCCCC
Q 026903 219 HVGGPPYKVSVSE 231 (231)
Q Consensus 219 ~~~~~~~~~~~~~ 231 (231)
. .||||.++++|
T Consensus 163 ~-~GPPf~v~~~e 174 (218)
T PF05724_consen 163 M-EGPPFSVTEEE 174 (218)
T ss_dssp S-SSSS----HHH
T ss_pred C-CCcCCCCCHHH
Confidence 4 59999998754
No 5
>PRK11207 tellurite resistance protein TehB; Provisional
Probab=99.88 E-value=1.1e-21 Score=152.51 Aligned_cols=138 Identities=15% Similarity=0.236 Sum_probs=110.7
Q ss_pred CCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC
Q 026903 91 IGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC 170 (231)
Q Consensus 91 ~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~ 170 (231)
...+.+.+.+.+. ..++.+|||+|||+|.++..|++.|.+|+++|+|+.+++.++++....++ .++++...|+.+..
T Consensus 15 ~~~~~~~l~~~l~--~~~~~~vLDiGcG~G~~a~~La~~g~~V~gvD~S~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~~ 91 (197)
T PRK11207 15 LTRTHSEVLEAVK--VVKPGKTLDLGCGNGRNSLYLAANGFDVTAWDKNPMSIANLERIKAAENL-DNLHTAVVDLNNLT 91 (197)
T ss_pred CCCChHHHHHhcc--cCCCCcEEEECCCCCHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHcCC-CcceEEecChhhCC
Confidence 3455777776665 34568999999999999999999999999999999999999988766554 35889999988754
Q ss_pred CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE-EEccCCCC--CCCCCCCCCCCC
Q 026903 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT-LMFPISDH--VGGPPYKVSVSE 231 (231)
Q Consensus 171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~-~~~~~~~~--~~~~~~~~~~~~ 231 (231)
..++||+|++..+++|++++.+..+++++.++|+|||++++ ..+..++. ..||||..+.+|
T Consensus 92 ~~~~fD~I~~~~~~~~~~~~~~~~~l~~i~~~LkpgG~~~~~~~~~~~~~~~~~~~~~~~~~~e 155 (197)
T PRK11207 92 FDGEYDFILSTVVLMFLEAKTIPGLIANMQRCTKPGGYNLIVAAMDTADYPCTVGFPFAFKEGE 155 (197)
T ss_pred cCCCcCEEEEecchhhCCHHHHHHHHHHHHHHcCCCcEEEEEEEecCCCCCCCCCCCCccCHHH
Confidence 45679999999999999888899999999999999999655 44444322 357788766543
No 6
>PF12847 Methyltransf_18: Methyltransferase domain; PDB: 3G2Q_A 3G2O_A 3G2M_B 3G2P_B 3D2L_B 1IM8_B 3NJR_A 3E05_H 3EVZ_A 3HM2_A ....
Probab=99.85 E-value=2.1e-20 Score=132.17 Aligned_cols=106 Identities=32% Similarity=0.461 Sum_probs=91.6
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC-CCCCCCCceeEEEeCC-c
Q 026903 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-FTWCPTELFDLIFDYT-F 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-~~~~~~~~fD~i~~~~-~ 183 (231)
|+.+|||+|||+|..+..+++ ++.+|+++|+|+++++.++++.......++++++++|+ ......+.||+|++.. .
T Consensus 1 p~~~vLDlGcG~G~~~~~l~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~~~D~v~~~~~~ 80 (112)
T PF12847_consen 1 PGGRVLDLGCGTGRLSIALARLFPGARVVGVDISPEMLEIARERAAEEGLSDRITFVQGDAEFDPDFLEPFDLVICSGFT 80 (112)
T ss_dssp TTCEEEEETTTTSHHHHHHHHHHTTSEEEEEESSHHHHHHHHHHHHHTTTTTTEEEEESCCHGGTTTSSCEEEEEECSGS
T ss_pred CCCEEEEEcCcCCHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECccccCcccCCCCCEEEECCCc
Confidence 468999999999999999999 89999999999999999999996666668999999999 4444456799999999 5
Q ss_pred ccccCh-HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 184 FCAIEP-EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 184 ~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
++++.. +...++++.+.+.|+|||++++.+
T Consensus 81 ~~~~~~~~~~~~~l~~~~~~L~pgG~lvi~~ 111 (112)
T PF12847_consen 81 LHFLLPLDERRRVLERIRRLLKPGGRLVINT 111 (112)
T ss_dssp GGGCCHHHHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhHHHHHHHHHHHhcCCCcEEEEEE
Confidence 554433 677899999999999999998865
No 7
>PF03848 TehB: Tellurite resistance protein TehB; InterPro: IPR015985 Tellurite resistance protein TehB is part of a tellurite-reducing operon tehA and tehB. When present in high copy number, TehB is responsible for potassium tellurite resistance, probably by increasing the reduction rate of tellurite to metallic tellurium within the bacterium. TehB is a cytoplasmic protein which possesses three conserved motifs (I, II, and III) found in S-adenosyl-L-methionine (SAM)-dependent non-nucleic acid methyltransferases []. Conformational changes in TehB are observed upon binding of both tellurite and SAM, suggesting that TehB utilises a methyltransferase activity in the detoxification of tellurite. This entry represents the methyltransferase domain found in all TehB proteins.; PDB: 2KW5_A 3MER_B 3M70_A 2I6G_A 4DQ0_D 2XVA_B 2XVM_A.
Probab=99.84 E-value=6.4e-20 Score=139.95 Aligned_cols=132 Identities=23% Similarity=0.310 Sum_probs=100.6
Q ss_pred ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCC
Q 026903 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP 154 (231)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~ 154 (231)
.++|.+.|..... .+.+...++ ..+++++||+|||.|+++.+|++.|..|+++|.|+.+++.+++.....+
T Consensus 6 ~~y~~kky~~~~~-------hs~v~~a~~--~~~~g~~LDlgcG~GRNalyLA~~G~~VtAvD~s~~al~~l~~~a~~~~ 76 (192)
T PF03848_consen 6 EDYFHKKYGLTPT-------HSEVLEAVP--LLKPGKALDLGCGEGRNALYLASQGFDVTAVDISPVALEKLQRLAEEEG 76 (192)
T ss_dssp TTHHHHHHTB-----------HHHHHHCT--TS-SSEEEEES-TTSHHHHHHHHTT-EEEEEESSHHHHHHHHHHHHHTT
T ss_pred HHHHHHhhCCCCC-------cHHHHHHHh--hcCCCcEEEcCCCCcHHHHHHHHCCCeEEEEECCHHHHHHHHHHHhhcC
Confidence 4566666644332 333444443 4467899999999999999999999999999999999999988877665
Q ss_pred CCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 155 NAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 155 ~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
+. |+....|+.+...++.||+|++..+++|++++.++.+++.+.+.++|||++++.++-..
T Consensus 77 l~--i~~~~~Dl~~~~~~~~yD~I~st~v~~fL~~~~~~~i~~~m~~~~~pGG~~li~~~~~~ 137 (192)
T PF03848_consen 77 LD--IRTRVADLNDFDFPEEYDFIVSTVVFMFLQRELRPQIIENMKAATKPGGYNLIVTFMET 137 (192)
T ss_dssp -T--EEEEE-BGCCBS-TTTEEEEEEESSGGGS-GGGHHHHHHHHHHTEEEEEEEEEEEEB--
T ss_pred ce--eEEEEecchhccccCCcCEEEEEEEeccCCHHHHHHHHHHHHhhcCCcEEEEEEEeccc
Confidence 43 89999999886556789999999999999999999999999999999999888776433
No 8
>TIGR00477 tehB tellurite resistance protein TehB. Part of a tellurite-reducing operon tehA and tehB
Probab=99.83 E-value=1.5e-19 Score=140.18 Aligned_cols=117 Identities=13% Similarity=0.155 Sum_probs=95.0
Q ss_pred cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026903 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (231)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 174 (231)
...+...+. ..++.+|||+|||+|.++..+++.|.+|+++|+|+.+++.++++....++ ++.+...|+.....+.+
T Consensus 19 ~~~l~~~~~--~~~~~~vLDiGcG~G~~a~~la~~g~~V~~iD~s~~~l~~a~~~~~~~~~--~v~~~~~d~~~~~~~~~ 94 (195)
T TIGR00477 19 HSAVREAVK--TVAPCKTLDLGCGQGRNSLYLSLAGYDVRAWDHNPASIASVLDMKARENL--PLRTDAYDINAAALNED 94 (195)
T ss_pred hHHHHHHhc--cCCCCcEEEeCCCCCHHHHHHHHCCCeEEEEECCHHHHHHHHHHHHHhCC--CceeEeccchhccccCC
Confidence 334444443 33468999999999999999999999999999999999999987765543 36777788765433468
Q ss_pred eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
||+|++..+++|++++....+++.+.++|+|||++++..+-
T Consensus 95 fD~I~~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lli~~~~ 135 (195)
T TIGR00477 95 YDFIFSTVVFMFLQAGRVPEIIANMQAHTRPGGYNLIVAAM 135 (195)
T ss_pred CCEEEEecccccCCHHHHHHHHHHHHHHhCCCcEEEEEEec
Confidence 99999999999998888899999999999999997666553
No 9
>COG2226 UbiE Methylase involved in ubiquinone/menaquinone biosynthesis [Coenzyme metabolism]
Probab=99.83 E-value=7.5e-20 Score=143.93 Aligned_cols=108 Identities=27% Similarity=0.316 Sum_probs=98.0
Q ss_pred CCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026903 108 PKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~ 184 (231)
++.+|||+|||||..+..+++.. .+|+++|+|+.|++.|+++....+... ++|+.+|+++ ++++.+||+|.+.+.+
T Consensus 51 ~g~~vLDva~GTGd~a~~~~k~~g~g~v~~~D~s~~ML~~a~~k~~~~~~~~-i~fv~~dAe~LPf~D~sFD~vt~~fgl 129 (238)
T COG2226 51 PGDKVLDVACGTGDMALLLAKSVGTGEVVGLDISESMLEVAREKLKKKGVQN-VEFVVGDAENLPFPDNSFDAVTISFGL 129 (238)
T ss_pred CCCEEEEecCCccHHHHHHHHhcCCceEEEEECCHHHHHHHHHHhhccCccc-eEEEEechhhCCCCCCccCEEEeeehh
Confidence 67999999999999999999843 599999999999999999998765544 9999999999 8889999999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
.+++ +..++|+++.|+|||||++++.+++...
T Consensus 130 rnv~--d~~~aL~E~~RVlKpgG~~~vle~~~p~ 161 (238)
T COG2226 130 RNVT--DIDKALKEMYRVLKPGGRLLVLEFSKPD 161 (238)
T ss_pred hcCC--CHHHHHHHHHHhhcCCeEEEEEEcCCCC
Confidence 9995 6678999999999999999999998753
No 10
>COG2227 UbiG 2-polyprenyl-3-methyl-5-hydroxy-6-metoxy-1,4-benzoquinol methylase [Coenzyme metabolism]
Probab=99.82 E-value=2e-20 Score=144.89 Aligned_cols=150 Identities=19% Similarity=0.220 Sum_probs=111.7
Q ss_pred cCCCChhHHHHHHHHhccccccchhhhhccCCCCCCCCCCcHHHHHHHH-----cCCCCCCcEEEecCCCchHHHHhcCC
Q 026903 55 NVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQ-----SGALPKGRALVPGCGTGYDVVAMASP 129 (231)
Q Consensus 55 ~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~vLDiGcG~G~~~~~l~~~ 129 (231)
....+..+++.+.++. ..+|+...... +-+.. ++.-..++. +..+++.+|||+|||.|.++..||+.
T Consensus 9 ~~~id~~e~~~F~~la----~~wwd~~g~f~--~LH~~--N~~rl~~i~~~~~~~~~l~g~~vLDvGCGgG~Lse~mAr~ 80 (243)
T COG2227 9 TQNVDYKELDKFEALA----SRWWDPEGEFK--PLHKI--NPLRLDYIREVARLRFDLPGLRVLDVGCGGGILSEPLARL 80 (243)
T ss_pred cccCCHHHHHHHHHHH----hhhcCCCCcee--eeeee--ccchhhhhhhhhhcccCCCCCeEEEecCCccHhhHHHHHC
Confidence 3455666777776666 55665333221 11211 222222222 22368899999999999999999999
Q ss_pred CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcE
Q 026903 130 ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE 208 (231)
Q Consensus 130 ~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 208 (231)
|++|+|+|++++.|+.|+.+..+.++. +++.+...++.... ++||+|+|..+++|++++ ..+++.|.+++||||.
T Consensus 81 Ga~VtgiD~se~~I~~Ak~ha~e~gv~--i~y~~~~~edl~~~~~~FDvV~cmEVlEHv~dp--~~~~~~c~~lvkP~G~ 156 (243)
T COG2227 81 GASVTGIDASEKPIEVAKLHALESGVN--IDYRQATVEDLASAGGQFDVVTCMEVLEHVPDP--ESFLRACAKLVKPGGI 156 (243)
T ss_pred CCeeEEecCChHHHHHHHHhhhhcccc--ccchhhhHHHHHhcCCCccEEEEhhHHHccCCH--HHHHHHHHHHcCCCcE
Confidence 999999999999999999998876643 66888887775443 799999999999999755 4599999999999999
Q ss_pred EEEEEccC
Q 026903 209 LITLMFPI 216 (231)
Q Consensus 209 l~~~~~~~ 216 (231)
+++.+-..
T Consensus 157 lf~STinr 164 (243)
T COG2227 157 LFLSTINR 164 (243)
T ss_pred EEEecccc
Confidence 99987554
No 11
>PLN02244 tocopherol O-methyltransferase
Probab=99.81 E-value=2.1e-18 Score=144.65 Aligned_cols=107 Identities=21% Similarity=0.282 Sum_probs=94.6
Q ss_pred CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026903 108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC 185 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~ 185 (231)
++.+|||+|||+|.++..+++ .+.+|+|+|+|+.+++.++++....+..++++|+.+|+.+ ++++++||+|++..+++
T Consensus 118 ~~~~VLDiGCG~G~~~~~La~~~g~~v~gvD~s~~~i~~a~~~~~~~g~~~~v~~~~~D~~~~~~~~~~FD~V~s~~~~~ 197 (340)
T PLN02244 118 RPKRIVDVGCGIGGSSRYLARKYGANVKGITLSPVQAARANALAAAQGLSDKVSFQVADALNQPFEDGQFDLVWSMESGE 197 (340)
T ss_pred CCCeEEEecCCCCHHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEcCcccCCCCCCCccEEEECCchh
Confidence 457999999999999999998 4789999999999999999988776666789999999988 55678999999999999
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
|++ +..++++++.++|||||.+++.++..
T Consensus 198 h~~--d~~~~l~e~~rvLkpGG~lvi~~~~~ 226 (340)
T PLN02244 198 HMP--DKRKFVQELARVAAPGGRIIIVTWCH 226 (340)
T ss_pred ccC--CHHHHHHHHHHHcCCCcEEEEEEecc
Confidence 995 45689999999999999999988754
No 12
>PF01209 Ubie_methyltran: ubiE/COQ5 methyltransferase family; InterPro: IPR004033 A number of methyltransferases have been shown to share regions of similarities []. Apart from the ubiquinone/menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the ubiE gene of Escherichia coli), the ubiquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the COQ5 gene of Saccharomyces cerevisiae) and the menaquinone biosynthesis methyltransferases (for example, the C-methyltransferase from the MENH gene of Bacillus subtilis), this family also includes methyltransferases involved in biotin and sterol biosynthesis and in phosphatidylethanolamine methylation.; GO: 0008168 methyltransferase activity; PDB: 1VL5_C.
Probab=99.81 E-value=1.1e-19 Score=144.15 Aligned_cols=110 Identities=25% Similarity=0.294 Sum_probs=83.9
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeC
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY 181 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~ 181 (231)
..++.+|||+|||+|..+..+++ +..+|+++|+|+.+++.|+++....+.. +|+++++|.++ ++++++||+|++.
T Consensus 45 ~~~g~~vLDv~~GtG~~~~~l~~~~~~~~~v~~vD~s~~ML~~a~~k~~~~~~~-~i~~v~~da~~lp~~d~sfD~v~~~ 123 (233)
T PF01209_consen 45 LRPGDRVLDVACGTGDVTRELARRVGPNGKVVGVDISPGMLEVARKKLKREGLQ-NIEFVQGDAEDLPFPDNSFDAVTCS 123 (233)
T ss_dssp --S--EEEEET-TTSHHHHHHGGGSS---EEEEEES-HHHHHHHHHHHHHTT---SEEEEE-BTTB--S-TT-EEEEEEE
T ss_pred CCCCCEEEEeCCChHHHHHHHHHHCCCccEEEEecCCHHHHHHHHHHHHhhCCC-CeeEEEcCHHHhcCCCCceeEEEHH
Confidence 45668999999999999999887 3359999999999999999988766543 79999999999 6778899999999
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
+.++++++ ..+.++++.++|||||++++.+|+...
T Consensus 124 fglrn~~d--~~~~l~E~~RVLkPGG~l~ile~~~p~ 158 (233)
T PF01209_consen 124 FGLRNFPD--RERALREMYRVLKPGGRLVILEFSKPR 158 (233)
T ss_dssp S-GGG-SS--HHHHHHHHHHHEEEEEEEEEEEEEB-S
T ss_pred hhHHhhCC--HHHHHHHHHHHcCCCeEEEEeeccCCC
Confidence 99999854 567999999999999999999987653
No 13
>PRK11036 putative S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.80 E-value=5.9e-19 Score=142.58 Aligned_cols=117 Identities=17% Similarity=0.183 Sum_probs=99.3
Q ss_pred HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCce
Q 026903 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELF 175 (231)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~f 175 (231)
+..++.....++.+|||+|||+|.++..+++.+.+|+++|+|+++++.|+++....+..++++++++|+.+. .+.++|
T Consensus 34 ~~~~l~~l~~~~~~vLDiGcG~G~~a~~la~~g~~v~~vD~s~~~l~~a~~~~~~~g~~~~v~~~~~d~~~l~~~~~~~f 113 (255)
T PRK11036 34 LDRLLAELPPRPLRVLDAGGGEGQTAIKLAELGHQVILCDLSAEMIQRAKQAAEAKGVSDNMQFIHCAAQDIAQHLETPV 113 (255)
T ss_pred HHHHHHhcCCCCCEEEEeCCCchHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHhcCCccceEEEEcCHHHHhhhcCCCC
Confidence 345555544456899999999999999999999999999999999999999988776667899999998773 345789
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
|+|++..+++|+++. ..+++++.++|||||+|++..+..
T Consensus 114 D~V~~~~vl~~~~~~--~~~l~~~~~~LkpgG~l~i~~~n~ 152 (255)
T PRK11036 114 DLILFHAVLEWVADP--KSVLQTLWSVLRPGGALSLMFYNA 152 (255)
T ss_pred CEEEehhHHHhhCCH--HHHHHHHHHHcCCCeEEEEEEECc
Confidence 999999999999543 578999999999999998877654
No 14
>PF08241 Methyltransf_11: Methyltransferase domain; InterPro: IPR013216 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Arsenite methyltransferase (2.1.1.137 from EC) which converts arsenical compounds to their methylated forms [] Biotin synthesis protein bioC, which is involved in the early stages of biotin biosyntheis [] Arginine N-methyltransferase 1, an arginine-methylating enzyme which acts on residues present in a glycine and argine-rich domain and can methylate histones [] Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Sterol 24-C-methyltransferase (2.1.1.41 from EC), shown to participate in ergosterol biosynthesis [] 3-demethylubiquinone-9 3-methyltransferase (2.1.1.64 from EC) involved in ubiquinone biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ]. ; GO: 0008168 methyltransferase activity, 0008152 metabolic process; PDB: 3CGG_B 3CCF_B 3BKW_B 2PXX_A 3I9F_A 2YQZ_B 2YR0_A 3BUS_A 3EGE_A 3G5L_B ....
Probab=99.80 E-value=7.4e-19 Score=120.18 Aligned_cols=93 Identities=31% Similarity=0.422 Sum_probs=81.2
Q ss_pred EEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcccccChH
Q 026903 113 LVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPE 190 (231)
Q Consensus 113 LDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~~ 190 (231)
||+|||+|..+..+++. +.+|+++|+++++++.++++.... ++.+..+|..+ ++++++||+|++..+++|+ +
T Consensus 1 LdiG~G~G~~~~~l~~~~~~~v~~~D~~~~~~~~~~~~~~~~----~~~~~~~d~~~l~~~~~sfD~v~~~~~~~~~--~ 74 (95)
T PF08241_consen 1 LDIGCGTGRFAAALAKRGGASVTGIDISEEMLEQARKRLKNE----GVSFRQGDAEDLPFPDNSFDVVFSNSVLHHL--E 74 (95)
T ss_dssp EEET-TTSHHHHHHHHTTTCEEEEEES-HHHHHHHHHHTTTS----TEEEEESBTTSSSS-TT-EEEEEEESHGGGS--S
T ss_pred CEecCcCCHHHHHHHhccCCEEEEEeCCHHHHHHHHhccccc----CchheeehHHhCccccccccccccccceeec--c
Confidence 89999999999999997 889999999999999999988654 46799999999 5677899999999999999 6
Q ss_pred HHHHHHHHHHhhcCCCcEEEE
Q 026903 191 MRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 191 ~~~~~l~~~~~~L~pgG~l~~ 211 (231)
+..++++++.++|||||++++
T Consensus 75 ~~~~~l~e~~rvLk~gG~l~~ 95 (95)
T PF08241_consen 75 DPEAALREIYRVLKPGGRLVI 95 (95)
T ss_dssp HHHHHHHHHHHHEEEEEEEEE
T ss_pred CHHHHHHHHHHHcCcCeEEeC
Confidence 778999999999999999975
No 15
>PLN02396 hexaprenyldihydroxybenzoate methyltransferase
Probab=99.79 E-value=4.6e-19 Score=146.48 Aligned_cols=107 Identities=16% Similarity=0.203 Sum_probs=92.1
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCcccc
Q 026903 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCA 186 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~~~ 186 (231)
++.+|||||||+|.++..+++.|.+|+|+|+++++++.|+++........+++++++|+.+. ...++||+|++..+++|
T Consensus 131 ~g~~ILDIGCG~G~~s~~La~~g~~V~GID~s~~~i~~Ar~~~~~~~~~~~i~~~~~dae~l~~~~~~FD~Vi~~~vLeH 210 (322)
T PLN02396 131 EGLKFIDIGCGGGLLSEPLARMGATVTGVDAVDKNVKIARLHADMDPVTSTIEYLCTTAEKLADEGRKFDAVLSLEVIEH 210 (322)
T ss_pred CCCEEEEeeCCCCHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcCcccceeEEecCHHHhhhccCCCCEEEEhhHHHh
Confidence 45699999999999999999999999999999999999998765443335799999998873 45578999999999999
Q ss_pred cChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+++ ...+++++.++|||||.+++.+...
T Consensus 211 v~d--~~~~L~~l~r~LkPGG~liist~nr 238 (322)
T PLN02396 211 VAN--PAEFCKSLSALTIPNGATVLSTINR 238 (322)
T ss_pred cCC--HHHHHHHHHHHcCCCcEEEEEECCc
Confidence 964 3689999999999999999887644
No 16
>PRK12335 tellurite resistance protein TehB; Provisional
Probab=99.79 E-value=4.4e-18 Score=139.68 Aligned_cols=116 Identities=17% Similarity=0.234 Sum_probs=97.2
Q ss_pred cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026903 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (231)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 174 (231)
...+...+. ..++.+|||+|||+|.++..+++.|.+|+++|+|+.+++.++++....++ ++++...|+.....+++
T Consensus 109 ~~~~~~~~~--~~~~~~vLDlGcG~G~~~~~la~~g~~V~avD~s~~ai~~~~~~~~~~~l--~v~~~~~D~~~~~~~~~ 184 (287)
T PRK12335 109 HSEVLEAVQ--TVKPGKALDLGCGQGRNSLYLALLGFDVTAVDINQQSLENLQEIAEKENL--NIRTGLYDINSASIQEE 184 (287)
T ss_pred cHHHHHHhh--ccCCCCEEEeCCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEechhcccccCC
Confidence 333444443 24457999999999999999999999999999999999999998876654 58888888877544678
Q ss_pred eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
||+|++..+++|++++....+++++.++|+|||+++++..
T Consensus 185 fD~I~~~~vl~~l~~~~~~~~l~~~~~~LkpgG~~l~v~~ 224 (287)
T PRK12335 185 YDFILSTVVLMFLNRERIPAIIKNMQEHTNPGGYNLIVCA 224 (287)
T ss_pred ccEEEEcchhhhCCHHHHHHHHHHHHHhcCCCcEEEEEEe
Confidence 9999999999999888889999999999999999766543
No 17
>PTZ00098 phosphoethanolamine N-methyltransferase; Provisional
Probab=99.78 E-value=5.8e-18 Score=137.11 Aligned_cols=137 Identities=18% Similarity=0.222 Sum_probs=108.0
Q ss_pred ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhcc
Q 026903 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSS 152 (231)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~ 152 (231)
...|+..+...... ..-......++....+ ++.+|||+|||+|..+..+++ .+.+|+++|+++.+++.|+++...
T Consensus 21 ~~~~e~~~g~~~~~---~gg~~~~~~~l~~l~l~~~~~VLDiGcG~G~~a~~la~~~~~~v~giD~s~~~~~~a~~~~~~ 97 (263)
T PTZ00098 21 IKAYEFIFGEDYIS---SGGIEATTKILSDIELNENSKVLDIGSGLGGGCKYINEKYGAHVHGVDICEKMVNIAKLRNSD 97 (263)
T ss_pred chhHHHHhCCCCCC---CCchHHHHHHHHhCCCCCCCEEEEEcCCCChhhHHHHhhcCCEEEEEECCHHHHHHHHHHcCc
Confidence 34566666543321 1113446666766544 458999999999999998876 567999999999999999998654
Q ss_pred CCCCCceEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 153 LPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 153 ~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
.+++.|..+|+.+ ++++++||+|++..+++|++.+++..+++++.++|||||.+++.++...
T Consensus 98 ---~~~i~~~~~D~~~~~~~~~~FD~V~s~~~l~h~~~~d~~~~l~~i~r~LkPGG~lvi~d~~~~ 160 (263)
T PTZ00098 98 ---KNKIEFEANDILKKDFPENTFDMIYSRDAILHLSYADKKKLFEKCYKWLKPNGILLITDYCAD 160 (263)
T ss_pred ---CCceEEEECCcccCCCCCCCeEEEEEhhhHHhCCHHHHHHHHHHHHHHcCCCcEEEEEEeccc
Confidence 2479999999987 5567799999999999998877889999999999999999999888554
No 18
>PF05401 NodS: Nodulation protein S (NodS); InterPro: IPR008715 This entry consists of nodulation S (NodS) proteins. The products of the rhizobial nodulation genes are involved in the biosynthesis of lipochitin oligosaccharides (LCOs), which are host-specific signal molecules required for nodule formation. NodS is an S-adenosyl-L-methionine (SAM)-dependent methyltransferase involved in N methylation of LCOs. NodS uses N-deacetylated chitooligosaccharides, the products of the NodBC proteins, as its methyl acceptors [].; GO: 0008757 S-adenosylmethionine-dependent methyltransferase activity, 0009312 oligosaccharide biosynthetic process, 0009877 nodulation; PDB: 3OFK_D 3OFJ_A.
Probab=99.78 E-value=2.5e-18 Score=129.87 Aligned_cols=128 Identities=23% Similarity=0.266 Sum_probs=96.4
Q ss_pred CCCCCCCCCC-cHHHH--HHHH-cCCCCC-CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCce
Q 026903 85 GLTPWDIGQP-APIIV--HLHQ-SGALPK-GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFV 159 (231)
Q Consensus 85 ~~~~~~~~~~-~~~~~--~~~~-~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i 159 (231)
...||..... ++..+ .++. ....+. .++||+|||.|.++..|+.++.+++++|+++.+++.|+++.... ++|
T Consensus 15 ~~DPW~~~~~~YE~~K~~~~l~aaLp~~ry~~alEvGCs~G~lT~~LA~rCd~LlavDis~~Al~~Ar~Rl~~~---~~V 91 (201)
T PF05401_consen 15 NDDPWGFETSWYERRKYRATLLAALPRRRYRRALEVGCSIGVLTERLAPRCDRLLAVDISPRALARARERLAGL---PHV 91 (201)
T ss_dssp SSSGGGTTT-HHHHHHHHHHHHHHHTTSSEEEEEEE--TTSHHHHHHGGGEEEEEEEES-HHHHHHHHHHTTT----SSE
T ss_pred CCCCCCCCCCHHHHHHHHHHHHHhcCccccceeEecCCCccHHHHHHHHhhCceEEEeCCHHHHHHHHHhcCCC---CCe
Confidence 3457886533 33322 2232 123333 69999999999999999999899999999999999999998765 479
Q ss_pred EEEEccCCCCCCCCceeEEEeCCcccccCh-HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 160 SFLKADFFTWCPTELFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 160 ~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
+|++.|+.+..|+++||+|+++.+++++++ +++..+++.+...|+|||.|++.++.
T Consensus 92 ~~~~~dvp~~~P~~~FDLIV~SEVlYYL~~~~~L~~~l~~l~~~L~pgG~LV~g~~r 148 (201)
T PF05401_consen 92 EWIQADVPEFWPEGRFDLIVLSEVLYYLDDAEDLRAALDRLVAALAPGGHLVFGHAR 148 (201)
T ss_dssp EEEES-TTT---SS-EEEEEEES-GGGSSSHHHHHHHHHHHHHTEEEEEEEEEEEE-
T ss_pred EEEECcCCCCCCCCCeeEEEEehHhHcCCCHHHHHHHHHHHHHHhCCCCEEEEEEec
Confidence 999999999888899999999999999975 68899999999999999999998774
No 19
>KOG1270 consensus Methyltransferases [Coenzyme transport and metabolism]
Probab=99.78 E-value=1e-18 Score=136.37 Aligned_cols=103 Identities=20% Similarity=0.260 Sum_probs=87.1
Q ss_pred CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCC-----ceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAK-----FVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~-----~i~~~~~d~~~~~~~~~fD~i~~~~~~ 184 (231)
++|||+|||.|.++..|++.|+.|+|+|.++.+++.|+++....+... ++.+...+++... +.||.|+|..++
T Consensus 91 ~~ilDvGCGgGLLSepLArlga~V~GID~s~~~V~vA~~h~~~dP~~~~~~~y~l~~~~~~~E~~~--~~fDaVvcsevl 168 (282)
T KOG1270|consen 91 MKILDVGCGGGLLSEPLARLGAQVTGIDASDDMVEVANEHKKMDPVLEGAIAYRLEYEDTDVEGLT--GKFDAVVCSEVL 168 (282)
T ss_pred ceEEEeccCccccchhhHhhCCeeEeecccHHHHHHHHHhhhcCchhccccceeeehhhcchhhcc--cccceeeeHHHH
Confidence 689999999999999999999999999999999999999854433222 3667777777654 349999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+|+ .+...++..+.++|||||.|++.+-..
T Consensus 169 eHV--~dp~~~l~~l~~~lkP~G~lfittinr 198 (282)
T KOG1270|consen 169 EHV--KDPQEFLNCLSALLKPNGRLFITTINR 198 (282)
T ss_pred HHH--hCHHHHHHHHHHHhCCCCceEeeehhh
Confidence 999 566789999999999999999987543
No 20
>PRK15451 tRNA cmo(5)U34 methyltransferase; Provisional
Probab=99.78 E-value=4.9e-18 Score=136.53 Aligned_cols=113 Identities=18% Similarity=0.205 Sum_probs=95.7
Q ss_pred HHHcCCCCCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903 101 LHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (231)
Q Consensus 101 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD 176 (231)
++.....++.+|||+|||+|..+..+++ ++.+++++|+|+.+++.|+++....+...+++++++|+.+... ..+|
T Consensus 49 ~~~~~~~~~~~vLDlGcGtG~~~~~l~~~~~~~~~~v~gvD~S~~ml~~A~~~~~~~~~~~~v~~~~~d~~~~~~-~~~D 127 (247)
T PRK15451 49 LAERFVQPGTQVYDLGCSLGAATLSVRRNIHHDNCKIIAIDNSPAMIERCRRHIDAYKAPTPVDVIEGDIRDIAI-ENAS 127 (247)
T ss_pred HHHHhCCCCCEEEEEcccCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEeCChhhCCC-CCCC
Confidence 3333344568999999999999888765 5679999999999999999998776655679999999988543 3599
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
+|++..+++|++++.+..+++++.++|+|||.|++.+.
T Consensus 128 ~vv~~~~l~~l~~~~~~~~l~~i~~~LkpGG~l~l~e~ 165 (247)
T PRK15451 128 MVVLNFTLQFLEPSERQALLDKIYQGLNPGGALVLSEK 165 (247)
T ss_pred EEehhhHHHhCCHHHHHHHHHHHHHhcCCCCEEEEEEe
Confidence 99999999999888889999999999999999999874
No 21
>PF13847 Methyltransf_31: Methyltransferase domain; PDB: 3T0I_B 3SVZ_B 3SXJ_A 3F4K_A 3GU3_B 2GH1_A 1R8Y_E 1R8X_B 2B3T_A 1T43_A ....
Probab=99.77 E-value=3.8e-18 Score=127.29 Aligned_cols=105 Identities=26% Similarity=0.367 Sum_probs=90.5
Q ss_pred CCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeCC
Q 026903 108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYT 182 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~~ 182 (231)
.+.+|||+|||+|.++..+++ ++.+++|+|+++++++.|++++...+.. +++|+++|+.+... .+.||+|++..
T Consensus 3 ~~~~iLDlGcG~G~~~~~l~~~~~~~~~i~gvD~s~~~i~~a~~~~~~~~~~-ni~~~~~d~~~l~~~~~~~~D~I~~~~ 81 (152)
T PF13847_consen 3 SNKKILDLGCGTGRLLIQLAKELNPGAKIIGVDISEEMIEYAKKRAKELGLD-NIEFIQGDIEDLPQELEEKFDIIISNG 81 (152)
T ss_dssp TTSEEEEET-TTSHHHHHHHHHSTTTSEEEEEESSHHHHHHHHHHHHHTTST-TEEEEESBTTCGCGCSSTTEEEEEEES
T ss_pred CCCEEEEecCcCcHHHHHHHHhcCCCCEEEEEECcHHHHHHhhccccccccc-ccceEEeehhccccccCCCeeEEEEcC
Confidence 357999999999999999993 4679999999999999999988777655 79999999999442 27899999999
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
+++|+. +...+++.+.++|++||.+++..+.
T Consensus 82 ~l~~~~--~~~~~l~~~~~~lk~~G~~i~~~~~ 112 (152)
T PF13847_consen 82 VLHHFP--DPEKVLKNIIRLLKPGGILIISDPN 112 (152)
T ss_dssp TGGGTS--HHHHHHHHHHHHEEEEEEEEEEEEE
T ss_pred chhhcc--CHHHHHHHHHHHcCCCcEEEEEECC
Confidence 999985 4468899999999999999988765
No 22
>PLN02233 ubiquinone biosynthesis methyltransferase
Probab=99.76 E-value=1.2e-17 Score=135.19 Aligned_cols=110 Identities=21% Similarity=0.165 Sum_probs=91.7
Q ss_pred CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhcc--CCCCCceEEEEccCCC-CCCCCceeEEEe
Q 026903 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSS--LPNAKFVSFLKADFFT-WCPTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~--~~~~~~i~~~~~d~~~-~~~~~~fD~i~~ 180 (231)
.++.+|||+|||+|.++..+++. ..+|+|+|+|+++++.|+++... ....++++++++|+.+ ++++++||+|++
T Consensus 72 ~~~~~VLDlGcGtG~~~~~la~~~~~~~~V~gvD~S~~ml~~A~~r~~~~~~~~~~~i~~~~~d~~~lp~~~~sfD~V~~ 151 (261)
T PLN02233 72 KMGDRVLDLCCGSGDLAFLLSEKVGSDGKVMGLDFSSEQLAVAASRQELKAKSCYKNIEWIEGDATDLPFDDCYFDAITM 151 (261)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhhhhccCCCeEEEEcccccCCCCCCCEeEEEE
Confidence 34579999999999999988863 24899999999999999876531 1123479999999988 566779999999
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
..+++|++ +..++++++.++|||||++++.++....
T Consensus 152 ~~~l~~~~--d~~~~l~ei~rvLkpGG~l~i~d~~~~~ 187 (261)
T PLN02233 152 GYGLRNVV--DRLKAMQEMYRVLKPGSRVSILDFNKST 187 (261)
T ss_pred ecccccCC--CHHHHHHHHHHHcCcCcEEEEEECCCCC
Confidence 99999985 4578999999999999999999987643
No 23
>TIGR00740 methyltransferase, putative. A simple BLAST search finds all members of this family and weaker hits to a large number of known and predicted methyltransferases. A single iteration with PSI-BLAST, keeping only clear members of the family, leads to a large number of highly significant hits to a set of known and predicted methyltransferases with a large repertoire of different specifities. This model is restricted to a subfamily found so far only in the Proteobacteria, sharing consistent length, full-length homology, and on average better than 35 % identity. It is reasonable to predict equivalent function within this subfamily.
Probab=99.76 E-value=2.4e-17 Score=132.00 Aligned_cols=109 Identities=18% Similarity=0.204 Sum_probs=93.7
Q ss_pred CCCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~ 182 (231)
.++.+|||+|||+|..+..+++ ++.+++|+|+|+.+++.|++++...+...+++++++|+.+.... .+|+|++..
T Consensus 52 ~~~~~iLDlGcG~G~~~~~l~~~~~~p~~~v~gvD~s~~ml~~a~~~~~~~~~~~~v~~~~~d~~~~~~~-~~d~v~~~~ 130 (239)
T TIGR00740 52 TPDSNVYDLGCSRGAATLSARRNINQPNVKIIGIDNSQPMVERCRQHIAAYHSEIPVEILCNDIRHVEIK-NASMVILNF 130 (239)
T ss_pred CCCCEEEEecCCCCHHHHHHHHhcCCCCCeEEEEeCCHHHHHHHHHHHHhcCCCCCeEEEECChhhCCCC-CCCEEeeec
Confidence 4567999999999999988876 46799999999999999999887655445799999999885433 589999999
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+++|+++++...+++++.++|+|||.+++.+...
T Consensus 131 ~l~~~~~~~~~~~l~~i~~~LkpgG~l~i~d~~~ 164 (239)
T TIGR00740 131 TLQFLPPEDRIALLTKIYEGLNPNGVLVLSEKFR 164 (239)
T ss_pred chhhCCHHHHHHHHHHHHHhcCCCeEEEEeeccc
Confidence 9999988888999999999999999999987543
No 24
>PF13649 Methyltransf_25: Methyltransferase domain; PDB: 3BXO_B 3GGD_A 3PX2_A 3PX3_A 3PFH_D 3PFG_A 1Y8C_A.
Probab=99.74 E-value=5.8e-18 Score=117.60 Aligned_cols=94 Identities=30% Similarity=0.357 Sum_probs=79.3
Q ss_pred EEEecCCCchHHHHhcCC---C--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeC-Ccc
Q 026903 112 ALVPGCGTGYDVVAMASP---E--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDY-TFF 184 (231)
Q Consensus 112 vLDiGcG~G~~~~~l~~~---~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~-~~~ 184 (231)
|||+|||+|..+..+++. + .+++++|+|+++++.++++....+. +++|++.|+.+ ....++||+|++. .++
T Consensus 1 ILDlgcG~G~~~~~l~~~~~~~~~~~~~gvD~s~~~l~~~~~~~~~~~~--~~~~~~~D~~~l~~~~~~~D~v~~~~~~~ 78 (101)
T PF13649_consen 1 ILDLGCGTGRVTRALARRFDAGPSSRVIGVDISPEMLELAKKRFSEDGP--KVRFVQADARDLPFSDGKFDLVVCSGLSL 78 (101)
T ss_dssp -EEET-TTSHHHHHHHHHS-----SEEEEEES-HHHHHHHHHHSHHTTT--TSEEEESCTTCHHHHSSSEEEEEE-TTGG
T ss_pred CEEeecCCcHHHHHHHHHhhhcccceEEEEECCHHHHHHHHHhchhcCC--ceEEEECCHhHCcccCCCeeEEEEcCCcc
Confidence 799999999999999874 3 7999999999999999998866443 68999999999 3345699999995 559
Q ss_pred cccChHHHHHHHHHHHhhcCCCc
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDG 207 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG 207 (231)
+|++++...++++++.++|+|||
T Consensus 79 ~~~~~~~~~~ll~~~~~~l~pgG 101 (101)
T PF13649_consen 79 HHLSPEELEALLRRIARLLRPGG 101 (101)
T ss_dssp GGSSHHHHHHHHHHHHHTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999998
No 25
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.74 E-value=6.5e-17 Score=141.72 Aligned_cols=158 Identities=23% Similarity=0.221 Sum_probs=118.0
Q ss_pred cccCCCChhHHHHHHHHhcc-cc----ccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHh
Q 026903 53 NDNVIKSHPRVNKLQQLMHI-ES----SGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAM 126 (231)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~-~~----~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l 126 (231)
+...+++..+.+.+...+.+ .. -..|..+|..... ..........+++.... ++.+|||+|||+|..+..+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~~~~y~~~~i~~~~~f~g~~~~---v~~~v~~te~l~~~~~~~~~~~vLDiGcG~G~~~~~l 284 (475)
T PLN02336 208 WLWQKVSSTNDKGFQRFLDNVQYKSSGILRYERVFGEGFV---STGGLETTKEFVDKLDLKPGQKVLDVGCGIGGGDFYM 284 (475)
T ss_pred EEEEeecCCcchhHHHHhhhhccccccHHHHHHHhCCCCC---CCchHHHHHHHHHhcCCCCCCEEEEEeccCCHHHHHH
Confidence 44556666666777777654 22 3447777765432 11122244556655433 4579999999999999988
Q ss_pred cC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcC
Q 026903 127 AS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLK 204 (231)
Q Consensus 127 ~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~ 204 (231)
++ .+.+|+|+|+|+.+++.|+++.... ..+++|+.+|+.+ +++.++||+|+|..+++|++ +..++++++.++|+
T Consensus 285 a~~~~~~v~gvDiS~~~l~~A~~~~~~~--~~~v~~~~~d~~~~~~~~~~fD~I~s~~~l~h~~--d~~~~l~~~~r~Lk 360 (475)
T PLN02336 285 AENFDVHVVGIDLSVNMISFALERAIGR--KCSVEFEVADCTKKTYPDNSFDVIYSRDTILHIQ--DKPALFRSFFKWLK 360 (475)
T ss_pred HHhcCCEEEEEECCHHHHHHHHHHhhcC--CCceEEEEcCcccCCCCCCCEEEEEECCcccccC--CHHHHHHHHHHHcC
Confidence 87 5679999999999999999876533 3579999999988 44567899999999999995 45689999999999
Q ss_pred CCcEEEEEEccCC
Q 026903 205 PDGELITLMFPIS 217 (231)
Q Consensus 205 pgG~l~~~~~~~~ 217 (231)
|||.|++.++...
T Consensus 361 pgG~l~i~~~~~~ 373 (475)
T PLN02336 361 PGGKVLISDYCRS 373 (475)
T ss_pred CCeEEEEEEeccC
Confidence 9999999887654
No 26
>PF02353 CMAS: Mycolic acid cyclopropane synthetase; InterPro: IPR003333 This entry represents mycolic acid cyclopropane synthases and related enzymes, including CmaA1, CmaA2 (cyclopropane mycolic acid synthase A1 and A2) and MmaA1-4 (methoxymycolic acid synthase A1-4). All are thought to be S-adenosyl-L-methionine (SAM) utilising methyltransferases []. Mycolic acid cyclopropane synthase or cyclopropane-fatty-acyl-phospholipid synthase (CFA synthase) 2.1.1.79 from EC catalyses the reaction: S-adenosyl-L-methionine + phospholipid olefinic fatty acid -> S-adenosyl-L-homocysteine + phospholipid cyclopropane fatty acid. The major mycolic acid produced by Mycobacterium tuberculosis contains two cis-cyclopropanes in the meromycolate chain. Cyclopropanation may contribute to the structural integrity of the cell wall complex [].; GO: 0008610 lipid biosynthetic process; PDB: 3HA5_A 2FK8_A 3HA7_A 3HA3_A 2FK7_A 1KPG_D 1KP9_B 1KPH_D 3VC2_E 3VC1_D ....
Probab=99.73 E-value=3.7e-17 Score=132.52 Aligned_cols=117 Identities=25% Similarity=0.266 Sum_probs=94.1
Q ss_pred HHHHHHcCCC-CCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903 98 IVHLHQSGAL-PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (231)
Q Consensus 98 ~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f 175 (231)
+..++++..+ ++.+|||||||.|.++..+++. |.+|+|+.+|++..+.+++++.+.++.+++++...|..+... +|
T Consensus 51 ~~~~~~~~~l~~G~~vLDiGcGwG~~~~~~a~~~g~~v~gitlS~~Q~~~a~~~~~~~gl~~~v~v~~~D~~~~~~--~f 128 (273)
T PF02353_consen 51 LDLLCEKLGLKPGDRVLDIGCGWGGLAIYAAERYGCHVTGITLSEEQAEYARERIREAGLEDRVEVRLQDYRDLPG--KF 128 (273)
T ss_dssp HHHHHTTTT--TT-EEEEES-TTSHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHCSTSSSTEEEEES-GGG-----S-
T ss_pred HHHHHHHhCCCCCCEEEEeCCCccHHHHHHHHHcCcEEEEEECCHHHHHHHHHHHHhcCCCCceEEEEeeccccCC--CC
Confidence 3444555544 5689999999999999999996 899999999999999999999999888899999999987543 89
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
|.|++..+++|+.++....+++.+.++|+|||++++..+..
T Consensus 129 D~IvSi~~~Ehvg~~~~~~~f~~~~~~LkpgG~~~lq~i~~ 169 (273)
T PF02353_consen 129 DRIVSIEMFEHVGRKNYPAFFRKISRLLKPGGRLVLQTITH 169 (273)
T ss_dssp SEEEEESEGGGTCGGGHHHHHHHHHHHSETTEEEEEEEEEE
T ss_pred CEEEEEechhhcChhHHHHHHHHHHHhcCCCcEEEEEeccc
Confidence 99999999999998888999999999999999998765543
No 27
>TIGR03587 Pse_Me-ase pseudaminic acid biosynthesis-associated methylase. Members of this small clade are methyltransferases of the pfam08241 family and are observed within operons for the biosynthesis of pseudaminic acid, a component of exopolysaccharide and flagellin glycosyl modifications. Notable among these genomes is Pseudomonas fluorescens PfO-1. Possibly one of the two hydroxyl groups of pseudaminic acid, at positions 4 and 8 is converted to a methoxy group by this enzyme
Probab=99.73 E-value=5.6e-17 Score=126.41 Aligned_cols=101 Identities=16% Similarity=0.271 Sum_probs=87.3
Q ss_pred CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~ 185 (231)
++.+|||+|||+|..+..+++. +.+++|+|+|+++++.|+++.. ++.+.++|+.++.+.++||+|++..+++
T Consensus 43 ~~~~VLDiGCG~G~~~~~L~~~~~~~~v~giDiS~~~l~~A~~~~~------~~~~~~~d~~~~~~~~sfD~V~~~~vL~ 116 (204)
T TIGR03587 43 KIASILELGANIGMNLAALKRLLPFKHIYGVEINEYAVEKAKAYLP------NINIIQGSLFDPFKDNFFDLVLTKGVLI 116 (204)
T ss_pred CCCcEEEEecCCCHHHHHHHHhCCCCeEEEEECCHHHHHHHHhhCC------CCcEEEeeccCCCCCCCEEEEEECChhh
Confidence 4579999999999999999873 6799999999999999998652 4678899988877778999999999999
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
|++++...++++++.+++ ++.+++.++-.
T Consensus 117 hl~p~~~~~~l~el~r~~--~~~v~i~e~~~ 145 (204)
T TIGR03587 117 HINPDNLPTAYRELYRCS--NRYILIAEYYN 145 (204)
T ss_pred hCCHHHHHHHHHHHHhhc--CcEEEEEEeeC
Confidence 999888999999999997 56777777633
No 28
>TIGR00452 methyltransferase, putative. Known examples to date are restricted to the proteobacteria.
Probab=99.72 E-value=2.8e-16 Score=129.45 Aligned_cols=117 Identities=20% Similarity=0.231 Sum_probs=89.8
Q ss_pred HHHHcC-CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeE
Q 026903 100 HLHQSG-ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDL 177 (231)
Q Consensus 100 ~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~ 177 (231)
+++... ..++++|||+|||+|+++..++..|. .|+|+|+|+.++..+...........++.+..+++.+......||+
T Consensus 112 ~~l~~l~~~~g~~VLDvGCG~G~~~~~~~~~g~~~v~GiDpS~~ml~q~~~~~~~~~~~~~v~~~~~~ie~lp~~~~FD~ 191 (314)
T TIGR00452 112 RVLPHLSPLKGRTILDVGCGSGYHMWRMLGHGAKSLVGIDPTVLFLCQFEAVRKLLDNDKRAILEPLGIEQLHELYAFDT 191 (314)
T ss_pred HHHHhcCCCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHHhccCCCeEEEECCHHHCCCCCCcCE
Confidence 344443 45678999999999999999988776 7999999999987643321111112468888888888554568999
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
|+|..+++|++ +...+|++++++|+|||.|++.+...++
T Consensus 192 V~s~gvL~H~~--dp~~~L~el~r~LkpGG~Lvletl~i~g 230 (314)
T TIGR00452 192 VFSMGVLYHRK--SPLEHLKQLKHQLVIKGELVLETLVIDG 230 (314)
T ss_pred EEEcchhhccC--CHHHHHHHHHHhcCCCCEEEEEEEEecC
Confidence 99999999985 3467899999999999999988765543
No 29
>PRK14103 trans-aconitate 2-methyltransferase; Provisional
Probab=99.71 E-value=6e-17 Score=130.88 Aligned_cols=106 Identities=19% Similarity=0.153 Sum_probs=88.5
Q ss_pred HHHHHcCC-CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (231)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f 175 (231)
..++.... .++.+|||+|||+|.++..+++. +.+|+|+|+|+.+++.|++. +++++.+|+.+..+.++|
T Consensus 19 ~~ll~~l~~~~~~~vLDlGcG~G~~~~~l~~~~p~~~v~gvD~s~~~~~~a~~~--------~~~~~~~d~~~~~~~~~f 90 (255)
T PRK14103 19 YDLLARVGAERARRVVDLGCGPGNLTRYLARRWPGAVIEALDSSPEMVAAARER--------GVDARTGDVRDWKPKPDT 90 (255)
T ss_pred HHHHHhCCCCCCCEEEEEcCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHhc--------CCcEEEcChhhCCCCCCc
Confidence 44455443 35589999999999999999874 67999999999999999763 378999999886566799
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
|+|+++.+++|+++ ..++++++.++|||||.+++...
T Consensus 91 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~l~~~~~ 127 (255)
T PRK14103 91 DVVVSNAALQWVPE--HADLLVRWVDELAPGSWIAVQVP 127 (255)
T ss_pred eEEEEehhhhhCCC--HHHHHHHHHHhCCCCcEEEEEcC
Confidence 99999999999963 46889999999999999988643
No 30
>COG2230 Cfa Cyclopropane fatty acid synthase and related methyltransferases [Cell envelope biogenesis, outer membrane]
Probab=99.71 E-value=1.6e-16 Score=127.33 Aligned_cols=144 Identities=20% Similarity=0.170 Sum_probs=114.5
Q ss_pred cccccchhhhhccCCCCCCCCCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHH
Q 026903 72 IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEEL 149 (231)
Q Consensus 72 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~ 149 (231)
.....||..+|........ ..-...+..++++..+ |+++|||||||-|.+++.+|+ .|.+|+|+++|++..+.++++
T Consensus 36 d~~~~Yscayf~~~~~tL~-eAQ~~k~~~~~~kl~L~~G~~lLDiGCGWG~l~~~aA~~y~v~V~GvTlS~~Q~~~~~~r 114 (283)
T COG2230 36 DPSMTYSCAYFEDPDMTLE-EAQRAKLDLILEKLGLKPGMTLLDIGCGWGGLAIYAAEEYGVTVVGVTLSEEQLAYAEKR 114 (283)
T ss_pred CCCCceeeEEeCCCCCChH-HHHHHHHHHHHHhcCCCCCCEEEEeCCChhHHHHHHHHHcCCEEEEeeCCHHHHHHHHHH
Confidence 3344566666655432100 0012234555555544 568999999999999999999 589999999999999999999
Q ss_pred hccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 150 SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 150 ~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
+...++..+++++..|..++.. .||-|++...++|+..+..+.+++.+.+.|+|||.+++.+.....
T Consensus 115 ~~~~gl~~~v~v~l~d~rd~~e--~fDrIvSvgmfEhvg~~~~~~ff~~~~~~L~~~G~~llh~I~~~~ 181 (283)
T COG2230 115 IAARGLEDNVEVRLQDYRDFEE--PFDRIVSVGMFEHVGKENYDDFFKKVYALLKPGGRMLLHSITGPD 181 (283)
T ss_pred HHHcCCCcccEEEecccccccc--ccceeeehhhHHHhCcccHHHHHHHHHhhcCCCceEEEEEecCCC
Confidence 9988888899999999998763 499999999999999988999999999999999999887765544
No 31
>PRK15068 tRNA mo(5)U34 methyltransferase; Provisional
Probab=99.70 E-value=2e-16 Score=131.52 Aligned_cols=110 Identities=25% Similarity=0.352 Sum_probs=87.5
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~ 184 (231)
.+++.+|||+|||+|.++..++..|. .|+|+|+|+.++..++......+...+++++.+|+.+....+.||+|+|..++
T Consensus 120 ~l~g~~VLDIGCG~G~~~~~la~~g~~~V~GiD~S~~~l~q~~a~~~~~~~~~~i~~~~~d~e~lp~~~~FD~V~s~~vl 199 (322)
T PRK15068 120 PLKGRTVLDVGCGNGYHMWRMLGAGAKLVVGIDPSQLFLCQFEAVRKLLGNDQRAHLLPLGIEQLPALKAFDTVFSMGVL 199 (322)
T ss_pred CCCCCEEEEeccCCcHHHHHHHHcCCCEEEEEcCCHHHHHHHHHHHHhcCCCCCeEEEeCCHHHCCCcCCcCEEEECChh
Confidence 35678999999999999999998775 69999999998876543221111124699999999885446789999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
+|.. +...+++++.++|+|||.+++.++..+
T Consensus 200 ~H~~--dp~~~L~~l~~~LkpGG~lvl~~~~i~ 230 (322)
T PRK15068 200 YHRR--SPLDHLKQLKDQLVPGGELVLETLVID 230 (322)
T ss_pred hccC--CHHHHHHHHHHhcCCCcEEEEEEEEec
Confidence 9984 346789999999999999998775443
No 32
>PRK10258 biotin biosynthesis protein BioC; Provisional
Probab=99.70 E-value=2.1e-16 Score=127.41 Aligned_cols=102 Identities=17% Similarity=0.183 Sum_probs=87.7
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcccc
Q 026903 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~ 186 (231)
+..+|||+|||+|.++..+++.+.+|+++|+|+.+++.++++.. ...++.+|+.+ ++++++||+|+++.++++
T Consensus 42 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~~D~s~~~l~~a~~~~~------~~~~~~~d~~~~~~~~~~fD~V~s~~~l~~ 115 (251)
T PRK10258 42 KFTHVLDAGCGPGWMSRYWRERGSQVTALDLSPPMLAQARQKDA------ADHYLAGDIESLPLATATFDLAWSNLAVQW 115 (251)
T ss_pred CCCeEEEeeCCCCHHHHHHHHcCCeEEEEECCHHHHHHHHhhCC------CCCEEEcCcccCcCCCCcEEEEEECchhhh
Confidence 34799999999999999998888999999999999999998753 24688899988 455678999999999988
Q ss_pred cChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
.+ +...++.++.++|+|||.+++.++...
T Consensus 116 ~~--d~~~~l~~~~~~Lk~gG~l~~~~~~~~ 144 (251)
T PRK10258 116 CG--NLSTALRELYRVVRPGGVVAFTTLVQG 144 (251)
T ss_pred cC--CHHHHHHHHHHHcCCCeEEEEEeCCCC
Confidence 74 456889999999999999999887653
No 33
>TIGR02752 MenG_heptapren 2-heptaprenyl-1,4-naphthoquinone methyltransferase. MenG is a generic term for a methyltransferase that catalyzes the last step in menaquinone biosynthesis; the exact enzymatic activity differs for different MenG because the menaquinone differ in their prenoid side chains in different species. Members of this MenG protein family are 2-heptaprenyl-1,4-naphthoquinone methyltransferase, and are found together in operons with the two subunits of the heptaprenyl diphosphate synthase in Bacillus subtilis and related species.
Probab=99.69 E-value=5.9e-16 Score=123.27 Aligned_cols=115 Identities=17% Similarity=0.175 Sum_probs=93.4
Q ss_pred HHHHHcCCC-CCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCC
Q 026903 99 VHLHQSGAL-PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE 173 (231)
Q Consensus 99 ~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~ 173 (231)
..++..... ++.+|||+|||+|..+..+++ ++.+|+|+|+++.+++.++++....+. ++++++.+|..+ +.+.+
T Consensus 35 ~~~l~~l~~~~~~~vLDiGcG~G~~~~~la~~~~~~~~v~gvD~s~~~~~~a~~~~~~~~~-~~v~~~~~d~~~~~~~~~ 113 (231)
T TIGR02752 35 KDTMKRMNVQAGTSALDVCCGTADWSIALAEAVGPEGHVIGLDFSENMLSVGRQKVKDAGL-HNVELVHGNAMELPFDDN 113 (231)
T ss_pred HHHHHhcCCCCCCEEEEeCCCcCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHhcCC-CceEEEEechhcCCCCCC
Confidence 444444433 457999999999999999886 345999999999999999998765544 479999999988 34567
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+||+|++..+++++++ ..++++++.++|+|||.+++.+...
T Consensus 114 ~fD~V~~~~~l~~~~~--~~~~l~~~~~~Lk~gG~l~~~~~~~ 154 (231)
T TIGR02752 114 SFDYVTIGFGLRNVPD--YMQVLREMYRVVKPGGKVVCLETSQ 154 (231)
T ss_pred CccEEEEecccccCCC--HHHHHHHHHHHcCcCeEEEEEECCC
Confidence 9999999999988853 4678999999999999998877543
No 34
>PRK01683 trans-aconitate 2-methyltransferase; Provisional
Probab=99.69 E-value=2.8e-16 Score=127.23 Aligned_cols=107 Identities=21% Similarity=0.345 Sum_probs=88.9
Q ss_pred HHHHHcCC-CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (231)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f 175 (231)
..++.... .++.+|||+|||+|.++..+++ ++.+|+|+|+|+.+++.++++. .++.|+.+|+.+..+..+|
T Consensus 21 ~~ll~~~~~~~~~~vLDiGcG~G~~~~~la~~~~~~~v~gvD~s~~~i~~a~~~~------~~~~~~~~d~~~~~~~~~f 94 (258)
T PRK01683 21 RDLLARVPLENPRYVVDLGCGPGNSTELLVERWPAARITGIDSSPAMLAEARSRL------PDCQFVEADIASWQPPQAL 94 (258)
T ss_pred HHHHhhCCCcCCCEEEEEcccCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhC------CCCeEEECchhccCCCCCc
Confidence 34444433 3457999999999999999987 4679999999999999999875 3578999999886666799
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
|+|+++.+++|+++ ...+++++.++|+|||.+++..
T Consensus 95 D~v~~~~~l~~~~d--~~~~l~~~~~~LkpgG~~~~~~ 130 (258)
T PRK01683 95 DLIFANASLQWLPD--HLELFPRLVSLLAPGGVLAVQM 130 (258)
T ss_pred cEEEEccChhhCCC--HHHHHHHHHHhcCCCcEEEEEC
Confidence 99999999999853 4689999999999999988753
No 35
>COG4106 Tam Trans-aconitate methyltransferase [General function prediction only]
Probab=99.69 E-value=8.5e-17 Score=122.20 Aligned_cols=99 Identities=25% Similarity=0.397 Sum_probs=89.3
Q ss_pred CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~ 184 (231)
.+..+|.|+|||+|..+..|++ ++..++|+|.|++|++.|+++. ++++|..+|+.++.++..+|+++++.++
T Consensus 29 ~~~~~v~DLGCGpGnsTelL~~RwP~A~i~GiDsS~~Mla~Aa~rl------p~~~f~~aDl~~w~p~~~~dllfaNAvl 102 (257)
T COG4106 29 ERPRRVVDLGCGPGNSTELLARRWPDAVITGIDSSPAMLAKAAQRL------PDATFEEADLRTWKPEQPTDLLFANAVL 102 (257)
T ss_pred cccceeeecCCCCCHHHHHHHHhCCCCeEeeccCCHHHHHHHHHhC------CCCceecccHhhcCCCCccchhhhhhhh
Confidence 3458999999999999999998 7889999999999999998876 4689999999999999999999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
++++ +..+++.++...|+|||+|.+..
T Consensus 103 qWlp--dH~~ll~rL~~~L~Pgg~LAVQm 129 (257)
T COG4106 103 QWLP--DHPELLPRLVSQLAPGGVLAVQM 129 (257)
T ss_pred hhcc--ccHHHHHHHHHhhCCCceEEEEC
Confidence 9995 55789999999999999987643
No 36
>smart00828 PKS_MT Methyltransferase in polyketide synthase (PKS) enzymes.
Probab=99.68 E-value=2.8e-16 Score=124.53 Aligned_cols=105 Identities=23% Similarity=0.286 Sum_probs=90.7
Q ss_pred CcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903 110 GRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 187 (231)
++|||+|||+|..+..+++. +.+++|+|+|+.+++.++++....+..++++++..|+......++||+|++..+++|+
T Consensus 1 ~~vLDiGcG~G~~~~~la~~~~~~~v~gid~s~~~~~~a~~~~~~~gl~~~i~~~~~d~~~~~~~~~fD~I~~~~~l~~~ 80 (224)
T smart00828 1 KRVLDFGCGYGSDLIDLAERHPHLQLHGYTISPEQAEVGRERIRALGLQGRIRIFYRDSAKDPFPDTYDLVFGFEVIHHI 80 (224)
T ss_pred CeEEEECCCCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHhcCCCcceEEEecccccCCCCCCCCEeehHHHHHhC
Confidence 37999999999999999873 4699999999999999999987777777899999998764334589999999999998
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 188 EPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
.+ ...+++.+.++|+|||.+++.++..
T Consensus 81 ~~--~~~~l~~~~~~LkpgG~l~i~~~~~ 107 (224)
T smart00828 81 KD--KMDLFSNISRHLKDGGHLVLADFIA 107 (224)
T ss_pred CC--HHHHHHHHHHHcCCCCEEEEEEccc
Confidence 53 5789999999999999999988643
No 37
>PF05175 MTS: Methyltransferase small domain; InterPro: IPR007848 This domain is found in ribosomal RNA small subunit methyltransferase C and in other methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 1WY7_A 1DUS_A 2OZV_A 2PJD_A 1VQ1_A 1NV9_A 1SG9_C 1NV8_A 3Q87_B 3DMF_A ....
Probab=99.68 E-value=8.2e-16 Score=116.76 Aligned_cols=106 Identities=26% Similarity=0.407 Sum_probs=89.1
Q ss_pred CCCcEEEecCCCchHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903 108 PKGRALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~ 185 (231)
+..+|||+|||+|..+..+++.+. +|+++|+++.+++.+++++..++... ++++..|+.+..+.+.||+|+++..++
T Consensus 31 ~~~~vLDlG~G~G~i~~~la~~~~~~~v~~vDi~~~a~~~a~~n~~~n~~~~-v~~~~~d~~~~~~~~~fD~Iv~NPP~~ 109 (170)
T PF05175_consen 31 KGGRVLDLGCGSGVISLALAKRGPDAKVTAVDINPDALELAKRNAERNGLEN-VEVVQSDLFEALPDGKFDLIVSNPPFH 109 (170)
T ss_dssp TTCEEEEETSTTSHHHHHHHHTSTCEEEEEEESBHHHHHHHHHHHHHTTCTT-EEEEESSTTTTCCTTCEEEEEE---SB
T ss_pred cCCeEEEecCChHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHHhcCccc-cccccccccccccccceeEEEEccchh
Confidence 568999999999999999998554 69999999999999999999887665 999999999977778999999998766
Q ss_pred ccCh---HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 186 AIEP---EMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 186 ~~~~---~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.-.. +...++++...+.|+|||.|+++..
T Consensus 110 ~~~~~~~~~~~~~i~~a~~~Lk~~G~l~lv~~ 141 (170)
T PF05175_consen 110 AGGDDGLDLLRDFIEQARRYLKPGGRLFLVIN 141 (170)
T ss_dssp TTSHCHHHHHHHHHHHHHHHEEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHhccCCCEEEEEee
Confidence 5432 3568899999999999999976544
No 38
>PF08003 Methyltransf_9: Protein of unknown function (DUF1698); InterPro: IPR010017 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This entry represents a set of bacterial AdoMet-dependent tRNA (mo5U34)-methyltransferases. These enzymes catalyse the conversion of 5-hydroxyuridine (ho5U) to 5-methoxyuridine (mo5U) at the wobble position (34) of tRNA []. The 5-methoxyuridine is subsequently converted to uridine-5-oxyacetic acid, a modified nucleoside that is apparently necessary for the efficient decoding of G-ending Pro, Ala, and Val codons in these organisms [].; GO: 0016300 tRNA (uracil) methyltransferase activity, 0002098 tRNA wobble uridine modification
Probab=99.67 E-value=5.9e-16 Score=124.29 Aligned_cols=110 Identities=23% Similarity=0.260 Sum_probs=85.5
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHH--HhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEE--LSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~--~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~ 182 (231)
.+.+++|||||||.|+++..|+..|+ .|+|+|+++...-...- ++.. ....+.+....+++....+.||+|+|..
T Consensus 113 ~L~gk~VLDIGC~nGY~~frM~~~GA~~ViGiDP~~lf~~QF~~i~~~lg--~~~~~~~lplgvE~Lp~~~~FDtVF~MG 190 (315)
T PF08003_consen 113 DLKGKRVLDIGCNNGYYSFRMLGRGAKSVIGIDPSPLFYLQFEAIKHFLG--QDPPVFELPLGVEDLPNLGAFDTVFSMG 190 (315)
T ss_pred CcCCCEEEEecCCCcHHHHHHhhcCCCEEEEECCChHHHHHHHHHHHHhC--CCccEEEcCcchhhccccCCcCEEEEee
Confidence 67789999999999999999999888 79999999987655332 2221 1123444445666644467899999999
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 219 (231)
|++|...+ ...|+.+++.|+|||.|++.+...+++
T Consensus 191 VLYHrr~P--l~~L~~Lk~~L~~gGeLvLETlvi~g~ 225 (315)
T PF08003_consen 191 VLYHRRSP--LDHLKQLKDSLRPGGELVLETLVIDGD 225 (315)
T ss_pred ehhccCCH--HHHHHHHHHhhCCCCEEEEEEeeecCC
Confidence 99998533 578999999999999999988876654
No 39
>TIGR00138 gidB 16S rRNA methyltransferase GidB. GidB (glucose-inhibited division protein B) appears to be present and in a single copy in nearly all complete eubacterial genomes. It is missing only from some obligate intracellular species of various lineages (Chlamydiae, Ehrlichia, Wolbachia, Anaplasma, Buchnera, etc.). GidB shows a methytransferase fold in its the crystal structure, and acts as a 7-methylguanosine (m(7)G) methyltransferase, apparently specific to 16S rRNA.
Probab=99.67 E-value=8.4e-16 Score=117.61 Aligned_cols=100 Identities=19% Similarity=0.257 Sum_probs=82.6
Q ss_pred CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~ 184 (231)
.++.+|||+|||+|..+..++. ++.+|+++|.++.+++.++++....+.. +++++++|+.+....++||+|++.. +
T Consensus 41 ~~~~~vLDiGcGtG~~s~~la~~~~~~~V~~iD~s~~~~~~a~~~~~~~~~~-~i~~i~~d~~~~~~~~~fD~I~s~~-~ 118 (181)
T TIGR00138 41 LDGKKVIDIGSGAGFPGIPLAIARPELKLTLLESNHKKVAFLREVKAELGLN-NVEIVNGRAEDFQHEEQFDVITSRA-L 118 (181)
T ss_pred cCCCeEEEecCCCCccHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHhCCC-CeEEEecchhhccccCCccEEEehh-h
Confidence 4578999999999999998876 4468999999999999999988776553 5999999998865567899999876 4
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
+++ ..+++.+.++|+|||.+++..
T Consensus 119 ~~~-----~~~~~~~~~~LkpgG~lvi~~ 142 (181)
T TIGR00138 119 ASL-----NVLLELTLNLLKVGGYFLAYK 142 (181)
T ss_pred hCH-----HHHHHHHHHhcCCCCEEEEEc
Confidence 333 457788899999999998764
No 40
>KOG1540 consensus Ubiquinone biosynthesis methyltransferase COQ5 [Coenzyme transport and metabolism]
Probab=99.67 E-value=1.5e-15 Score=118.16 Aligned_cols=110 Identities=17% Similarity=0.096 Sum_probs=94.3
Q ss_pred CCCCcEEEecCCCchHHHHhcC--------CCCeEEEEeCChHHHHHHHHHhccCCCCC--ceEEEEccCCC-CCCCCce
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS--------PERYVVGLEISDIAIKKAEELSSSLPNAK--FVSFLKADFFT-WCPTELF 175 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~--~i~~~~~d~~~-~~~~~~f 175 (231)
.++.++||++||+|..+..+.+ ...+|+++|+|+.++..++++..+.++.+ ++.|+.+|+++ ++++..|
T Consensus 99 ~~~m~~lDvaGGTGDiaFril~~v~s~~~~~~~~V~v~Dinp~mL~vgkqRa~~~~l~~~~~~~w~~~dAE~LpFdd~s~ 178 (296)
T KOG1540|consen 99 GKGMKVLDVAGGTGDIAFRILRHVKSQFGDRESKVTVLDINPHMLAVGKQRAKKRPLKASSRVEWVEGDAEDLPFDDDSF 178 (296)
T ss_pred CCCCeEEEecCCcchhHHHHHHhhccccCCCCceEEEEeCCHHHHHHHHHHHhhcCCCcCCceEEEeCCcccCCCCCCcc
Confidence 3458999999999999998876 22589999999999999999886655433 48999999999 7888999
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
|.....+.+.+.+ +..+.|+++.|+|||||++.+.+|+...
T Consensus 179 D~yTiafGIRN~t--h~~k~l~EAYRVLKpGGrf~cLeFskv~ 219 (296)
T KOG1540|consen 179 DAYTIAFGIRNVT--HIQKALREAYRVLKPGGRFSCLEFSKVE 219 (296)
T ss_pred eeEEEecceecCC--CHHHHHHHHHHhcCCCcEEEEEEccccc
Confidence 9999988888874 5578999999999999999999998754
No 41
>PF08242 Methyltransf_12: Methyltransferase domain; InterPro: IPR013217 Methyl transfer from the ubiquitous donor S-adenosyl-L-methionine (SAM) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalyzed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. This entry represents a methyltransferase domain found in a large variety of SAM-dependent methyltransferases including, but not limited to: Hexaprenyldihydroxybenzoate methyltransferase (2.1.1.114 from EC), a mitochodrial enzyme involved in ubiquinone biosynthesis [] Fatty acid synthase (2.3.1.85 from EC), a biosynthetic enzyme catalysing the formation of long-chain fatty acids Glycine N-methyltransferase (2.1.1.20 from EC) which catalyses the SAM-dependent methylation of glycine to form sarcosine and may play a role in regulating the methylation potential of the cell [] Enniatin synthetase, involved in non-ribosomal biosynthesis of cyclohexadepsipeptidase, enniatin [] Histamine N-methyltransferase (2.1.1.8 from EC), a SAM-dependent histamine-inactivating enzyme [] A probable cobalt-precorrin-6Y C(15)-methyltransferase thought to be involved in adenosylcobalamin biosynthesis [] Structural studies show that this domain forms the Rossman-like alpha-beta fold typical of SAM-dependent methyltransferases [, , ].; PDB: 2VZ8_A 2VZ9_A.
Probab=99.67 E-value=5.1e-18 Score=117.40 Aligned_cols=95 Identities=32% Similarity=0.450 Sum_probs=62.5
Q ss_pred EEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCC--ceEEEEccCCCCCCCCceeEEEeCCcccccC
Q 026903 113 LVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAK--FVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (231)
Q Consensus 113 LDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~--~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~ 188 (231)
||+|||+|.++..++.. +.+++++|+|+.+++.++++........ .+++...+.......++||+|++..+++|+
T Consensus 1 LdiGcG~G~~~~~l~~~~~~~~~~~~D~s~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fD~V~~~~vl~~l- 79 (99)
T PF08242_consen 1 LDIGCGTGRLLRALLEELPDARYTGVDISPSMLERARERLAELGNDNFERLRFDVLDLFDYDPPESFDLVVASNVLHHL- 79 (99)
T ss_dssp -EESTTTS-TTTTHHHHC-EEEEEEEESSSSTTSTTCCCHHHCT---EEEEE--SSS---CCC----SEEEEE-TTS---
T ss_pred CEeCccChHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcCCcceeEEEeecCChhhcccccccceehhhhhHhhh-
Confidence 79999999999999884 6799999999999988888776653211 233333333334344699999999999999
Q ss_pred hHHHHHHHHHHHhhcCCCcEE
Q 026903 189 PEMRAAWAQKIKDFLKPDGEL 209 (231)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~l 209 (231)
++...+++.+.++|+|||+|
T Consensus 80 -~~~~~~l~~~~~~L~pgG~l 99 (99)
T PF08242_consen 80 -EDIEAVLRNIYRLLKPGGIL 99 (99)
T ss_dssp -S-HHHHHHHHTTT-TSS-EE
T ss_pred -hhHHHHHHHHHHHcCCCCCC
Confidence 56679999999999999986
No 42
>smart00138 MeTrc Methyltransferase, chemotaxis proteins. Methylates methyl-accepting chemotaxis proteins to form gamma-glutamyl methyl ester residues.
Probab=99.67 E-value=3.5e-16 Score=126.65 Aligned_cols=104 Identities=24% Similarity=0.324 Sum_probs=84.2
Q ss_pred CCcEEEecCCCchHH----HHhcC-------CCCeEEEEeCChHHHHHHHHHhccC------------------------
Q 026903 109 KGRALVPGCGTGYDV----VAMAS-------PERYVVGLEISDIAIKKAEELSSSL------------------------ 153 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~----~~l~~-------~~~~v~~iD~s~~~i~~a~~~~~~~------------------------ 153 (231)
+.+|||+|||+|... ..+++ .+.+|+|+|+|+.+++.|++.....
T Consensus 100 ~~ri~d~GCgtGee~YslA~~l~e~~~~~~~~~~~I~g~Dis~~~L~~Ar~~~y~~~~~~~~~~~~~~~yf~~~~~~~~v 179 (264)
T smart00138 100 RVRIWSAGCSTGEEPYSLAMLLAETLPKAREPDVKILATDIDLKALEKARAGIYPERELEDLPKALLARYFSRVEDKYRV 179 (264)
T ss_pred CEEEEeccccCChHHHHHHHHHHHHhhhcCCCCeEEEEEECCHHHHHHHHcCCCCHHHHhcCCHHHHhhhEEeCCCeEEE
Confidence 469999999999743 33333 1458999999999999999854210
Q ss_pred --CCCCceEEEEccCCCCC-CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 154 --PNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 154 --~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
.+..+++|.++|+.+.. +.+.||+|+|.++++|++++.+.++++++.++|+|||+|++.
T Consensus 180 ~~~ir~~V~F~~~dl~~~~~~~~~fD~I~crnvl~yf~~~~~~~~l~~l~~~L~pGG~L~lg 241 (264)
T smart00138 180 KPELKERVRFAKHNLLAESPPLGDFDLIFCRNVLIYFDEPTQRKLLNRFAEALKPGGYLFLG 241 (264)
T ss_pred ChHHhCcCEEeeccCCCCCCccCCCCEEEechhHHhCCHHHHHHHHHHHHHHhCCCeEEEEE
Confidence 01236899999999954 467899999999999999889999999999999999999763
No 43
>PF13489 Methyltransf_23: Methyltransferase domain; PDB: 3JWJ_A 3JWH_B 2AOV_B 2AOT_A 1JQD_B 2AOX_A 1JQE_A 2AOU_B 2AOW_A 3DLI_C ....
Probab=99.66 E-value=7.1e-16 Score=115.65 Aligned_cols=98 Identities=30% Similarity=0.319 Sum_probs=81.5
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~ 184 (231)
..++.+|||+|||.|.++..+++.+.+++|+|+++.+++. . ++.+...+... ..+.++||+|+|..++
T Consensus 20 ~~~~~~vLDiGcG~G~~~~~l~~~~~~~~g~D~~~~~~~~------~-----~~~~~~~~~~~~~~~~~~fD~i~~~~~l 88 (161)
T PF13489_consen 20 LKPGKRVLDIGCGTGSFLRALAKRGFEVTGVDISPQMIEK------R-----NVVFDNFDAQDPPFPDGSFDLIICNDVL 88 (161)
T ss_dssp TTTTSEEEEESSTTSHHHHHHHHTTSEEEEEESSHHHHHH------T-----TSEEEEEECHTHHCHSSSEEEEEEESSG
T ss_pred cCCCCEEEEEcCCCCHHHHHHHHhCCEEEEEECCHHHHhh------h-----hhhhhhhhhhhhhccccchhhHhhHHHH
Confidence 3456899999999999999998899999999999999988 1 13333333334 4456799999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+|++ +...+|+.+.++|||||++++.+...
T Consensus 89 ~~~~--d~~~~l~~l~~~LkpgG~l~~~~~~~ 118 (161)
T PF13489_consen 89 EHLP--DPEEFLKELSRLLKPGGYLVISDPNR 118 (161)
T ss_dssp GGSS--HHHHHHHHHHHCEEEEEEEEEEEEBT
T ss_pred hhcc--cHHHHHHHHHHhcCCCCEEEEEEcCC
Confidence 9996 46899999999999999999988765
No 44
>PLN03075 nicotianamine synthase; Provisional
Probab=99.66 E-value=9.7e-16 Score=124.19 Aligned_cols=138 Identities=16% Similarity=0.132 Sum_probs=101.9
Q ss_pred ccchhhhhccCCCCCCCCCCcHHHHHHHH----------cC-CCCCCcEEEecCCCchH-HHHhcC---CCCeEEEEeCC
Q 026903 75 SGGWEKCWEEGLTPWDIGQPAPIIVHLHQ----------SG-ALPKGRALVPGCGTGYD-VVAMAS---PERYVVGLEIS 139 (231)
Q Consensus 75 ~~~w~~~~~~~~~~~~~~~~~~~~~~~~~----------~~-~~~~~~vLDiGcG~G~~-~~~l~~---~~~~v~~iD~s 139 (231)
...|.+.......||......+....+++ .. ..++.+|+|||||.|.+ +..++. ++.+++++|.+
T Consensus 79 E~~~a~~i~~~~~p~~~l~~Fpy~~nY~~L~~lE~~~L~~~~~~~p~~VldIGcGpgpltaiilaa~~~p~~~~~giD~d 158 (296)
T PLN03075 79 EAHFSTILGSFDNPLDHLNLFPYYNNYLKLSKLEFDLLSQHVNGVPTKVAFVGSGPLPLTSIVLAKHHLPTTSFHNFDID 158 (296)
T ss_pred HHHHHHHHhcCCcHHHHhhcCCchHHHHHHHHHHHHHHHHhhcCCCCEEEEECCCCcHHHHHHHHHhcCCCCEEEEEeCC
Confidence 35565555555566664333222222211 11 22568999999997744 343432 56689999999
Q ss_pred hHHHHHHHHHhcc-CCCCCceEEEEccCCCCCC-CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 140 DIAIKKAEELSSS-LPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 140 ~~~i~~a~~~~~~-~~~~~~i~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
+++++.|++.+.. .++.++++|..+|+.+..+ .+.||+|++. ++++++.+.+.++++.+.+.|+|||.|++-.
T Consensus 159 ~~ai~~Ar~~~~~~~gL~~rV~F~~~Da~~~~~~l~~FDlVF~~-ALi~~dk~~k~~vL~~l~~~LkPGG~Lvlr~ 233 (296)
T PLN03075 159 PSANDVARRLVSSDPDLSKRMFFHTADVMDVTESLKEYDVVFLA-ALVGMDKEEKVKVIEHLGKHMAPGALLMLRS 233 (296)
T ss_pred HHHHHHHHHHhhhccCccCCcEEEECchhhcccccCCcCEEEEe-cccccccccHHHHHHHHHHhcCCCcEEEEec
Confidence 9999999998854 5666789999999998543 4689999999 9999987888999999999999999998765
No 45
>TIGR02716 C20_methyl_CrtF C-20 methyltransferase BchU. Members of this protein family are the S-adenosylmethionine-depenedent C-20 methyltransferase BchU, part of the pathway of bacteriochlorophyll c production in photosynthetic green sulfur bacteria. The position modified by this enzyme represents the difference between bacteriochlorophylls c and d; strains lacking this protein can only produced bacteriochlorophyll d.
Probab=99.66 E-value=2.4e-15 Score=124.70 Aligned_cols=110 Identities=19% Similarity=0.170 Sum_probs=94.3
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~ 185 (231)
+..+|||+|||+|.++..+++ ++.+++++|. +.+++.++++....+..++++++.+|+.+...+ .+|+|++..++|
T Consensus 149 ~~~~vlDiG~G~G~~~~~~~~~~p~~~~~~~D~-~~~~~~a~~~~~~~gl~~rv~~~~~d~~~~~~~-~~D~v~~~~~lh 226 (306)
T TIGR02716 149 GVKKMIDVGGGIGDISAAMLKHFPELDSTILNL-PGAIDLVNENAAEKGVADRMRGIAVDIYKESYP-EADAVLFCRILY 226 (306)
T ss_pred CCCEEEEeCCchhHHHHHHHHHCCCCEEEEEec-HHHHHHHHHHHHhCCccceEEEEecCccCCCCC-CCCEEEeEhhhh
Confidence 347999999999999999988 4568999998 789999999988887778899999999863222 379999999999
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 219 (231)
+++++...++++++.+.|+|||+|++.++..+++
T Consensus 227 ~~~~~~~~~il~~~~~~L~pgG~l~i~d~~~~~~ 260 (306)
T TIGR02716 227 SANEQLSTIMCKKAFDAMRSGGRLLILDMVIDDP 260 (306)
T ss_pred cCChHHHHHHHHHHHHhcCCCCEEEEEEeccCCC
Confidence 9988777899999999999999999999865543
No 46
>PRK00107 gidB 16S rRNA methyltransferase GidB; Reviewed
Probab=99.66 E-value=1.3e-15 Score=116.95 Aligned_cols=101 Identities=21% Similarity=0.233 Sum_probs=85.3
Q ss_pred CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~ 186 (231)
+.+|||+|||+|..+..+++ ++.+|+++|+++.+++.|+++....+.. +++++.+|+.+....++||+|++...
T Consensus 46 g~~VLDiGcGtG~~al~la~~~~~~~V~giD~s~~~l~~A~~~~~~~~l~-~i~~~~~d~~~~~~~~~fDlV~~~~~--- 121 (187)
T PRK00107 46 GERVLDVGSGAGFPGIPLAIARPELKVTLVDSLGKKIAFLREVAAELGLK-NVTVVHGRAEEFGQEEKFDVVTSRAV--- 121 (187)
T ss_pred CCeEEEEcCCCCHHHHHHHHHCCCCeEEEEeCcHHHHHHHHHHHHHcCCC-CEEEEeccHhhCCCCCCccEEEEccc---
Confidence 68999999999999998875 6679999999999999999998887764 49999999988544668999998753
Q ss_pred cChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
.....+++.+.++|+|||++++.....
T Consensus 122 ---~~~~~~l~~~~~~LkpGG~lv~~~~~~ 148 (187)
T PRK00107 122 ---ASLSDLVELCLPLLKPGGRFLALKGRD 148 (187)
T ss_pred ---cCHHHHHHHHHHhcCCCeEEEEEeCCC
Confidence 223578999999999999999886543
No 47
>PRK11873 arsM arsenite S-adenosylmethyltransferase; Reviewed
Probab=99.65 E-value=1.9e-15 Score=123.27 Aligned_cols=108 Identities=19% Similarity=0.220 Sum_probs=89.4
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCC
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT 182 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~ 182 (231)
.++.+|||+|||+|..+..+++ ...+|+++|+++.+++.|+++....+. ++++|+.+|+.+ +.++++||+|+++.
T Consensus 76 ~~g~~VLDiG~G~G~~~~~~a~~~g~~~~v~gvD~s~~~l~~A~~~~~~~g~-~~v~~~~~d~~~l~~~~~~fD~Vi~~~ 154 (272)
T PRK11873 76 KPGETVLDLGSGGGFDCFLAARRVGPTGKVIGVDMTPEMLAKARANARKAGY-TNVEFRLGEIEALPVADNSVDVIISNC 154 (272)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEECCCHHHHHHHHHHHHHcCC-CCEEEEEcchhhCCCCCCceeEEEEcC
Confidence 3568999999999998877665 334799999999999999998766544 378999999988 44566899999999
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
+++|.+ +..++++++.++|||||+|++.++...
T Consensus 155 v~~~~~--d~~~~l~~~~r~LkpGG~l~i~~~~~~ 187 (272)
T PRK11873 155 VINLSP--DKERVFKEAFRVLKPGGRFAISDVVLR 187 (272)
T ss_pred cccCCC--CHHHHHHHHHHHcCCCcEEEEEEeecc
Confidence 998874 346789999999999999999887543
No 48
>TIGR02021 BchM-ChlM magnesium protoporphyrin O-methyltransferase. This model represents the S-adenosylmethionine-dependent O-methyltransferase responsible for methylation of magnesium protoporphyrin IX. This step is essentiasl for the biosynthesis of both chlorophyll and bacteriochlorophyll. This model encompasses two closely related clades, from cyanobacteria (and plants) where it is called ChlM and other photosynthetic bacteria where it is known as BchM.
Probab=99.65 E-value=3.1e-15 Score=118.20 Aligned_cols=102 Identities=21% Similarity=0.258 Sum_probs=88.6
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 187 (231)
++.+|||+|||+|.++..+++.+.+++|+|+++++++.|+++........++.|..+|+.+.. ++||+|++..+++|+
T Consensus 55 ~~~~vLDiGcG~G~~~~~la~~~~~v~gvD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~fD~ii~~~~l~~~ 132 (219)
T TIGR02021 55 KGKRVLDAGCGTGLLSIELAKRGAIVKAVDISEQMVQMARNRAQGRDVAGNVEFEVNDLLSLC--GEFDIVVCMDVLIHY 132 (219)
T ss_pred CCCEEEEEeCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcCCCCceEEEECChhhCC--CCcCEEEEhhHHHhC
Confidence 468999999999999999999888999999999999999998876554457999999998864 689999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 188 EPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
+++....+++++.+.+++++++.+
T Consensus 133 ~~~~~~~~l~~i~~~~~~~~~i~~ 156 (219)
T TIGR02021 133 PASDMAKALGHLASLTKERVIFTF 156 (219)
T ss_pred CHHHHHHHHHHHHHHhCCCEEEEE
Confidence 877788899999999987765544
No 49
>PRK11705 cyclopropane fatty acyl phospholipid synthase; Provisional
Probab=99.65 E-value=3.8e-15 Score=126.47 Aligned_cols=111 Identities=26% Similarity=0.285 Sum_probs=93.1
Q ss_pred HHHcCC-CCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEE
Q 026903 101 LHQSGA-LPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLI 178 (231)
Q Consensus 101 ~~~~~~-~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i 178 (231)
+++... .++.+|||+|||+|.++..+++ .+.+|+|+|+|+++++.|+++.... .+++...|..+. .++||.|
T Consensus 159 l~~~l~l~~g~rVLDIGcG~G~~a~~la~~~g~~V~giDlS~~~l~~A~~~~~~l----~v~~~~~D~~~l--~~~fD~I 232 (383)
T PRK11705 159 ICRKLQLKPGMRVLDIGCGWGGLARYAAEHYGVSVVGVTISAEQQKLAQERCAGL----PVEIRLQDYRDL--NGQFDRI 232 (383)
T ss_pred HHHHhCCCCCCEEEEeCCCccHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhccC----eEEEEECchhhc--CCCCCEE
Confidence 444443 3568999999999999999987 5779999999999999999987432 378888887765 3689999
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
++..+++|++......+++++.++|||||.+++.++..+
T Consensus 233 vs~~~~ehvg~~~~~~~l~~i~r~LkpGG~lvl~~i~~~ 271 (383)
T PRK11705 233 VSVGMFEHVGPKNYRTYFEVVRRCLKPDGLFLLHTIGSN 271 (383)
T ss_pred EEeCchhhCChHHHHHHHHHHHHHcCCCcEEEEEEccCC
Confidence 999999999877778999999999999999999877554
No 50
>KOG2361 consensus Predicted methyltransferase [General function prediction only]
Probab=99.64 E-value=1.1e-15 Score=117.97 Aligned_cols=143 Identities=20% Similarity=0.204 Sum_probs=111.4
Q ss_pred cccccchhhhhccCCCCCCCCCCcHHHHHHHHcC-CC---CCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHH
Q 026903 72 IESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQSG-AL---PKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAI 143 (231)
Q Consensus 72 ~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~---~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i 143 (231)
.....+|+.+|....+.+. ..+..+.+-+..+ .. +..+|||+|||.|.....+++ .+..++++|.|+.++
T Consensus 33 ~~~~k~wD~fy~~~~~rFf--kdR~wL~~Efpel~~~~~~~~~~ilEvGCGvGNtvfPll~~~~n~~l~v~acDfsp~Ai 110 (264)
T KOG2361|consen 33 REASKYWDTFYKIHENRFF--KDRNWLLREFPELLPVDEKSAETILEVGCGVGNTVFPLLKTSPNNRLKVYACDFSPRAI 110 (264)
T ss_pred cchhhhhhhhhhhcccccc--chhHHHHHhhHHhhCccccChhhheeeccCCCcccchhhhcCCCCCeEEEEcCCChHHH
Confidence 4456899999998877542 2244443333322 22 224899999999999999988 336899999999999
Q ss_pred HHHHHHhccCCCCCceEEEEccCCC-----CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 144 KKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 144 ~~a~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
+..+++..... .++.....|+.. +...+++|+|.+.+++..++++....++..+.++|||||.|++-+|...+
T Consensus 111 ~~vk~~~~~~e--~~~~afv~Dlt~~~~~~~~~~~svD~it~IFvLSAi~pek~~~a~~nl~~llKPGG~llfrDYg~~D 188 (264)
T KOG2361|consen 111 ELVKKSSGYDE--SRVEAFVWDLTSPSLKEPPEEGSVDIITLIFVLSAIHPEKMQSVIKNLRTLLKPGGSLLFRDYGRYD 188 (264)
T ss_pred HHHHhccccch--hhhcccceeccchhccCCCCcCccceEEEEEEEeccChHHHHHHHHHHHHHhCCCcEEEEeecccch
Confidence 99998776543 456666677666 34567999999999999999999999999999999999999999998763
No 51
>PLN02585 magnesium protoporphyrin IX methyltransferase
Probab=99.64 E-value=6.2e-15 Score=121.64 Aligned_cols=101 Identities=17% Similarity=0.196 Sum_probs=81.8
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCC----CCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP----NAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~~~~~~~fD~i~~~~ 182 (231)
.++.+|||+|||+|.++..+++.|.+|+|+|+|+.+++.++++..... ...++.|...|+.+. .+.||+|+|..
T Consensus 143 ~~~~~VLDlGcGtG~~a~~la~~g~~V~gvD~S~~ml~~A~~~~~~~~~~~~~~~~~~f~~~Dl~~l--~~~fD~Vv~~~ 220 (315)
T PLN02585 143 LAGVTVCDAGCGTGSLAIPLALEGAIVSASDISAAMVAEAERRAKEALAALPPEVLPKFEANDLESL--SGKYDTVTCLD 220 (315)
T ss_pred CCCCEEEEecCCCCHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcccccccccceEEEEcchhhc--CCCcCEEEEcC
Confidence 356799999999999999999999999999999999999999875431 123578999998664 46899999999
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 210 (231)
+++|++++....+++.+.. +.++|.++
T Consensus 221 vL~H~p~~~~~~ll~~l~~-l~~g~liI 247 (315)
T PLN02585 221 VLIHYPQDKADGMIAHLAS-LAEKRLII 247 (315)
T ss_pred EEEecCHHHHHHHHHHHHh-hcCCEEEE
Confidence 9999987766677887775 45665543
No 52
>PRK11088 rrmA 23S rRNA methyltransferase A; Provisional
Probab=99.64 E-value=7.2e-15 Score=119.81 Aligned_cols=158 Identities=20% Similarity=0.177 Sum_probs=106.0
Q ss_pred ceeeeccccccccCcccCC---CccccccccCCCChhHHHHHHHHhccccccchhhhhccCCCCCCCCCCcHHHHHHHHc
Q 026903 28 SSVRTRSFGIRATKPKMGK---NREEVENDNVIKSHPRVNKLQQLMHIESSGGWEKCWEEGLTPWDIGQPAPIIVHLHQS 104 (231)
Q Consensus 28 ~~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~ 104 (231)
.++++.+ +++.+..+-+. ....-+..+.+.+..++-..++.+ +..+.+ ......+..++..
T Consensus 17 ~~~~C~~-~h~fd~a~~Gy~~ll~~~~~~~~~~~d~~~~~~ar~~f-----------l~~g~y----~~l~~~i~~~l~~ 80 (272)
T PRK11088 17 NSWICPQ-NHQFDCAKEGYVNLLPVQHKRSKDPGDNKEMMQARRAF-----------LDAGHY----QPLRDAVANLLAE 80 (272)
T ss_pred CEEEcCC-CCCCccccCceEEeccccccCCCCCCcCHHHHHHHHHH-----------HHCCCh----HHHHHHHHHHHHH
Confidence 4567765 67766655443 222223556667777777766655 222111 1112223333433
Q ss_pred C-CCCCCcEEEecCCCchHHHHhcCC-----CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeE
Q 026903 105 G-ALPKGRALVPGCGTGYDVVAMASP-----ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDL 177 (231)
Q Consensus 105 ~-~~~~~~vLDiGcG~G~~~~~l~~~-----~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~ 177 (231)
. ..+..+|||+|||+|.++..+++. +..++|+|+|+.+++.|+++. +++.|..+|+.+ ++++++||+
T Consensus 81 ~l~~~~~~vLDiGcG~G~~~~~l~~~~~~~~~~~v~giD~s~~~l~~A~~~~------~~~~~~~~d~~~lp~~~~sfD~ 154 (272)
T PRK11088 81 RLDEKATALLDIGCGEGYYTHALADALPEITTMQLFGLDISKVAIKYAAKRY------PQVTFCVASSHRLPFADQSLDA 154 (272)
T ss_pred hcCCCCCeEEEECCcCCHHHHHHHHhcccccCCeEEEECCCHHHHHHHHHhC------CCCeEEEeecccCCCcCCceeE
Confidence 2 234478999999999999988752 237999999999999998764 358899999888 556779999
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
|++.... ..++++.++|||||+++++...+
T Consensus 155 I~~~~~~---------~~~~e~~rvLkpgG~li~~~p~~ 184 (272)
T PRK11088 155 IIRIYAP---------CKAEELARVVKPGGIVITVTPGP 184 (272)
T ss_pred EEEecCC---------CCHHHHHhhccCCCEEEEEeCCC
Confidence 9975432 13578999999999999886544
No 53
>PRK15001 SAM-dependent 23S ribosomal RNA mG1835 methyltransferase; Provisional
Probab=99.63 E-value=1.1e-14 Score=122.68 Aligned_cols=105 Identities=17% Similarity=0.224 Sum_probs=87.9
Q ss_pred CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCC--CceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNA--KFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~--~~i~~~~~d~~~~~~~~~fD~i~~~~~~ 184 (231)
..+|||+|||+|..+..+++ ++.+|+++|.|+.+++.+++++..+... .+++++..|..+..+..+||+|+|+..+
T Consensus 229 ~~~VLDLGCGtGvi~i~la~~~P~~~V~~vD~S~~Av~~A~~N~~~n~~~~~~~v~~~~~D~l~~~~~~~fDlIlsNPPf 308 (378)
T PRK15001 229 EGEIVDLGCGNGVIGLTLLDKNPQAKVVFVDESPMAVASSRLNVETNMPEALDRCEFMINNALSGVEPFRFNAVLCNPPF 308 (378)
T ss_pred CCeEEEEeccccHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCcccCceEEEEEccccccCCCCCEEEEEECcCc
Confidence 36999999999999999988 4569999999999999999998765432 3689999998876555689999999777
Q ss_pred cc---cChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 185 CA---IEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
|. +++....++++.+.++|+|||.|+++.
T Consensus 309 h~~~~~~~~ia~~l~~~a~~~LkpGG~L~iV~ 340 (378)
T PRK15001 309 HQQHALTDNVAWEMFHHARRCLKINGELYIVA 340 (378)
T ss_pred ccCccCCHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 64 344556789999999999999999875
No 54
>PRK07580 Mg-protoporphyrin IX methyl transferase; Validated
Probab=99.63 E-value=7.1e-15 Score=116.87 Aligned_cols=144 Identities=15% Similarity=0.189 Sum_probs=102.2
Q ss_pred HHHHHHhccccccchhhhhccCCCCCCCC----CCcHH---HHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCCCeEEE
Q 026903 64 NKLQQLMHIESSGGWEKCWEEGLTPWDIG----QPAPI---IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVG 135 (231)
Q Consensus 64 ~~~~~~~~~~~~~~w~~~~~~~~~~~~~~----~~~~~---~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~ 135 (231)
..++..+.+...+.|...|.......... ..... +..++... ..++.+|||+|||+|.++..+++.+..|++
T Consensus 11 ~~v~~~~~~~~~~~w~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~vLDvGcG~G~~~~~l~~~~~~v~~ 90 (230)
T PRK07580 11 SEVRTYFNRTGFDRWARIYSDAPVSKVRATVRAGHQRMRDTVLSWLPADGDLTGLRILDAGCGVGSLSIPLARRGAKVVA 90 (230)
T ss_pred hhhhHHHhhhccchHHHhhCcCchhHHHHHhcchHHHHHHHHHHHHHhcCCCCCCEEEEEeCCCCHHHHHHHHcCCEEEE
Confidence 33444554445677888886632210000 01111 22233321 234579999999999999999998889999
Q ss_pred EeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEE
Q 026903 136 LEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGEL 209 (231)
Q Consensus 136 iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l 209 (231)
+|+++.+++.|+++....+..+++++..+|+... .++||+|++..+++|++++....+++.+.+.+++++.+
T Consensus 91 ~D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~fD~v~~~~~l~~~~~~~~~~~l~~l~~~~~~~~~i 162 (230)
T PRK07580 91 SDISPQMVEEARERAPEAGLAGNITFEVGDLESL--LGRFDTVVCLDVLIHYPQEDAARMLAHLASLTRGSLIF 162 (230)
T ss_pred EECCHHHHHHHHHHHHhcCCccCcEEEEcCchhc--cCCcCEEEEcchhhcCCHHHHHHHHHHHHhhcCCeEEE
Confidence 9999999999999887665545799999995433 46799999999999988888888999998877655543
No 55
>PLN02490 MPBQ/MSBQ methyltransferase
Probab=99.63 E-value=3.6e-15 Score=123.87 Aligned_cols=100 Identities=17% Similarity=0.120 Sum_probs=84.9
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026903 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~ 184 (231)
++.+|||+|||+|.++..+++ .+.+|+++|+++.+++.++++... .+++++.+|+.+ .++.++||+|++..++
T Consensus 113 ~~~~VLDLGcGtG~~~l~La~~~~~~~VtgVD~S~~mL~~A~~k~~~----~~i~~i~gD~e~lp~~~~sFDvVIs~~~L 188 (340)
T PLN02490 113 RNLKVVDVGGGTGFTTLGIVKHVDAKNVTILDQSPHQLAKAKQKEPL----KECKIIEGDAEDLPFPTDYADRYVSAGSI 188 (340)
T ss_pred CCCEEEEEecCCcHHHHHHHHHCCCCEEEEEECCHHHHHHHHHhhhc----cCCeEEeccHHhCCCCCCceeEEEEcChh
Confidence 457999999999999988876 356999999999999999987542 358899999988 4556789999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
+|+++. ..+++++.++|+|||.+++..
T Consensus 189 ~~~~d~--~~~L~e~~rvLkPGG~LvIi~ 215 (340)
T PLN02490 189 EYWPDP--QRGIKEAYRVLKIGGKACLIG 215 (340)
T ss_pred hhCCCH--HHHHHHHHHhcCCCcEEEEEE
Confidence 998644 568999999999999998764
No 56
>PLN02336 phosphoethanolamine N-methyltransferase
Probab=99.63 E-value=5.7e-15 Score=129.51 Aligned_cols=106 Identities=23% Similarity=0.244 Sum_probs=91.0
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCcc
Q 026903 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~~~ 184 (231)
++.+|||+|||+|.++..+++.+.+|+|+|+++.+++.+++.... .++++++++|+.. +.+.++||+|++..++
T Consensus 37 ~~~~vLDlGcG~G~~~~~la~~~~~v~giD~s~~~l~~a~~~~~~---~~~i~~~~~d~~~~~~~~~~~~fD~I~~~~~l 113 (475)
T PLN02336 37 EGKSVLELGAGIGRFTGELAKKAGQVIALDFIESVIKKNESINGH---YKNVKFMCADVTSPDLNISDGSVDLIFSNWLL 113 (475)
T ss_pred CCCEEEEeCCCcCHHHHHHHhhCCEEEEEeCCHHHHHHHHHHhcc---CCceEEEEecccccccCCCCCCEEEEehhhhH
Confidence 457999999999999999999888999999999999987664322 2468999999864 3456789999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+|++++...++++++.++|||||++++.+...
T Consensus 114 ~~l~~~~~~~~l~~~~r~Lk~gG~l~~~d~~~ 145 (475)
T PLN02336 114 MYLSDKEVENLAERMVKWLKVGGYIFFRESCF 145 (475)
T ss_pred HhCCHHHHHHHHHHHHHhcCCCeEEEEEeccC
Confidence 99988888999999999999999999877543
No 57
>TIGR00537 hemK_rel_arch HemK-related putative methylase. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. This model represents an archaeal and eukaryotic protein family that lacks an N-terminal domain found in HemK and its eubacterial homologs. It is found in a single copy in the first six completed archaeal and eukaryotic genomes.
Probab=99.63 E-value=1.2e-14 Score=111.40 Aligned_cols=108 Identities=18% Similarity=0.285 Sum_probs=89.3
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~ 186 (231)
.++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++....+. +++++.+|+.+... ++||+|+++..+++
T Consensus 18 ~~~~~vLdlG~G~G~~~~~l~~~~~~v~~vD~s~~~~~~a~~~~~~~~~--~~~~~~~d~~~~~~-~~fD~Vi~n~p~~~ 94 (179)
T TIGR00537 18 LKPDDVLEIGAGTGLVAIRLKGKGKCILTTDINPFAVKELRENAKLNNV--GLDVVMTDLFKGVR-GKFDVILFNPPYLP 94 (179)
T ss_pred cCCCeEEEeCCChhHHHHHHHhcCCEEEEEECCHHHHHHHHHHHHHcCC--ceEEEEcccccccC-CcccEEEECCCCCC
Confidence 4457999999999999999999877999999999999999998876543 58899999887543 48999999988776
Q ss_pred cChH-------------------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 187 IEPE-------------------MRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 187 ~~~~-------------------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
.++. ...++++++.++|+|||.+++......
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~Lk~gG~~~~~~~~~~ 144 (179)
T TIGR00537 95 LEDDLRRGDWLDVAIDGGKDGRKVIDRFLDELPEILKEGGRVQLIQSSLN 144 (179)
T ss_pred CcchhcccchhhhhhhcCCchHHHHHHHHHhHHHhhCCCCEEEEEEeccC
Confidence 6431 246789999999999999988775543
No 58
>PF13659 Methyltransf_26: Methyltransferase domain; PDB: 3GJY_A 3LPM_B 2NP6_D 1AQI_B 2ADM_B 2IH2_A 2JG3_A 2IBS_D 2NP7_A 2IBT_A ....
Probab=99.62 E-value=2.3e-15 Score=107.13 Aligned_cols=104 Identities=24% Similarity=0.330 Sum_probs=87.2
Q ss_pred CcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEEeCCccc
Q 026903 110 GRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDYTFFC 185 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~i~~~~~~~ 185 (231)
.+|||+|||+|.++..+++.+ .+++++|+++..++.+++++...+..++++++++|+.+. .+..+||+|+++..+.
T Consensus 2 ~~vlD~~~G~G~~~~~~~~~~~~~~~gvdi~~~~~~~a~~~~~~~~~~~~~~~~~~D~~~~~~~~~~~~~D~Iv~npP~~ 81 (117)
T PF13659_consen 2 DRVLDPGCGSGTFLLAALRRGAARVTGVDIDPEAVELARRNLPRNGLDDRVEVIVGDARDLPEPLPDGKFDLIVTNPPYG 81 (117)
T ss_dssp EEEEEETSTTCHHHHHHHHHCTCEEEEEESSHHHHHHHHHHCHHCTTTTTEEEEESHHHHHHHTCTTT-EEEEEE--STT
T ss_pred CEEEEcCcchHHHHHHHHHHCCCeEEEEEECHHHHHHHHHHHHHccCCceEEEEECchhhchhhccCceeEEEEECCCCc
Confidence 589999999999999999977 799999999999999999998887777899999999883 4678999999987765
Q ss_pred ccC------hHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 186 AIE------PEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 186 ~~~------~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
... .+....+++++.++|+|||.++++.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~L~~gG~~~~~~ 115 (117)
T PF13659_consen 82 PRSGDKAALRRLYSRFLEAAARLLKPGGVLVFIT 115 (117)
T ss_dssp SBTT----GGCHHHHHHHHHHHHEEEEEEEEEEE
T ss_pred cccccchhhHHHHHHHHHHHHHHcCCCeEEEEEe
Confidence 431 1245788999999999999998764
No 59
>TIGR02072 BioC biotin biosynthesis protein BioC. This enzyme, which is found in biotin biosynthetic gene clusters in proteobacteria, firmicutes, green-sulfur bacteria, fusobacterium and bacteroides, is believed to carry out an enzymatic step prior to the formation of pimeloyl-CoA (although attribution of this annotation is not traceable). The enzyme appears related to methyltransferases by homology.
Probab=99.62 E-value=6.7e-15 Score=117.45 Aligned_cols=102 Identities=25% Similarity=0.230 Sum_probs=86.8
Q ss_pred CCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCcc
Q 026903 108 PKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~ 184 (231)
.+.+|||+|||+|.++..+++.+ .+++++|+++.+++.++++.. +++.++.+|+.+ +.+.++||+|++..++
T Consensus 34 ~~~~vLDlG~G~G~~~~~l~~~~~~~~~~~~D~~~~~~~~~~~~~~-----~~~~~~~~d~~~~~~~~~~fD~vi~~~~l 108 (240)
T TIGR02072 34 IPASVLDIGCGTGYLTRALLKRFPQAEFIALDISAGMLAQAKTKLS-----ENVQFICGDAEKLPLEDSSFDLIVSNLAL 108 (240)
T ss_pred CCCeEEEECCCccHHHHHHHHhCCCCcEEEEeChHHHHHHHHHhcC-----CCCeEEecchhhCCCCCCceeEEEEhhhh
Confidence 34799999999999999998844 478999999999999988764 258899999988 4466789999999999
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+|+. +...+++.+.++|+|||.+++.++..
T Consensus 109 ~~~~--~~~~~l~~~~~~L~~~G~l~~~~~~~ 138 (240)
T TIGR02072 109 QWCD--DLSQALSELARVLKPGGLLAFSTFGP 138 (240)
T ss_pred hhcc--CHHHHHHHHHHHcCCCcEEEEEeCCc
Confidence 9984 34679999999999999999887654
No 60
>TIGR00406 prmA ribosomal protein L11 methyltransferase. Ribosomal protein L11 methyltransferase is an S-adenosyl-L-methionine-dependent methyltransferase required for the modification of ribosomal protein L11. This protein is found in bacteria and (with a probable transit peptide) in Arabidopsis.
Probab=99.61 E-value=1.1e-14 Score=119.55 Aligned_cols=111 Identities=18% Similarity=0.153 Sum_probs=88.7
Q ss_pred HHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEE
Q 026903 100 HLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLI 178 (231)
Q Consensus 100 ~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i 178 (231)
.++.....++.+|||+|||+|.++..+++.|. +|+++|+++.+++.|+++...+++..++.+...+.... ..++||+|
T Consensus 151 ~~l~~~~~~g~~VLDvGcGsG~lai~aa~~g~~~V~avDid~~al~~a~~n~~~n~~~~~~~~~~~~~~~~-~~~~fDlV 229 (288)
T TIGR00406 151 EWLEDLDLKDKNVIDVGCGSGILSIAALKLGAAKVVGIDIDPLAVESARKNAELNQVSDRLQVKLIYLEQP-IEGKADVI 229 (288)
T ss_pred HHHHhhcCCCCEEEEeCCChhHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCcceEEEecccccc-cCCCceEE
Confidence 34444455678999999999999999888765 89999999999999999998777666677777764333 34689999
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+++... +....++..+.++|+|||.+++..+..
T Consensus 230 van~~~-----~~l~~ll~~~~~~LkpgG~li~sgi~~ 262 (288)
T TIGR00406 230 VANILA-----EVIKELYPQFSRLVKPGGWLILSGILE 262 (288)
T ss_pred EEecCH-----HHHHHHHHHHHHHcCCCcEEEEEeCcH
Confidence 987543 334678999999999999999987643
No 61
>PRK00121 trmB tRNA (guanine-N(7)-)-methyltransferase; Reviewed
Probab=99.61 E-value=4.6e-15 Score=115.68 Aligned_cols=105 Identities=21% Similarity=0.158 Sum_probs=84.1
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC-CCC---CCCCceeEEEeC
Q 026903 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-FTW---CPTELFDLIFDY 181 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-~~~---~~~~~fD~i~~~ 181 (231)
++.+|||+|||+|..+..+++ ++.+|+++|+++.+++.++++....+. .++.++++|+ ... .++++||+|++.
T Consensus 40 ~~~~VLDiGcGtG~~~~~la~~~p~~~v~gVD~s~~~i~~a~~~~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~D~V~~~ 118 (202)
T PRK00121 40 DAPIHLEIGFGKGEFLVEMAKANPDINFIGIEVHEPGVGKALKKIEEEGL-TNLRLLCGDAVEVLLDMFPDGSLDRIYLN 118 (202)
T ss_pred CCCeEEEEccCCCHHHHHHHHHCCCccEEEEEechHHHHHHHHHHHHcCC-CCEEEEecCHHHHHHHHcCccccceEEEE
Confidence 568999999999999999987 456899999999999999998876654 5699999999 442 456789999986
Q ss_pred CcccccC------hHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 182 TFFCAIE------PEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 182 ~~~~~~~------~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
....+.. ......+++++.++|+|||++++.+
T Consensus 119 ~~~p~~~~~~~~~~~~~~~~l~~i~~~LkpgG~l~i~~ 156 (202)
T PRK00121 119 FPDPWPKKRHHKRRLVQPEFLALYARKLKPGGEIHFAT 156 (202)
T ss_pred CCCCCCCccccccccCCHHHHHHHHHHcCCCCEEEEEc
Confidence 5433221 1124678999999999999998875
No 62
>PRK13944 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.61 E-value=1.6e-14 Score=112.92 Aligned_cols=107 Identities=21% Similarity=0.131 Sum_probs=85.2
Q ss_pred HHHHHcCC-CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCC
Q 026903 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTE 173 (231)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~ 173 (231)
..+++... .++.+|||+|||+|+.+..+++ .+.+|+++|+++++++.|++++...+...+++++.+|..+.. ...
T Consensus 62 ~~~~~~l~~~~~~~VLDiG~GsG~~~~~la~~~~~~g~V~~iD~~~~~~~~a~~~l~~~~~~~~v~~~~~d~~~~~~~~~ 141 (205)
T PRK13944 62 AMMCELIEPRPGMKILEVGTGSGYQAAVCAEAIERRGKVYTVEIVKELAIYAAQNIERLGYWGVVEVYHGDGKRGLEKHA 141 (205)
T ss_pred HHHHHhcCCCCCCEEEEECcCccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCCCcEEEEECCcccCCccCC
Confidence 33444433 3558999999999999988876 245899999999999999999887766567999999998743 346
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
+||+|++..++.+++ .++.+.|+|||+|++..
T Consensus 142 ~fD~Ii~~~~~~~~~--------~~l~~~L~~gG~lvi~~ 173 (205)
T PRK13944 142 PFDAIIVTAAASTIP--------SALVRQLKDGGVLVIPV 173 (205)
T ss_pred CccEEEEccCcchhh--------HHHHHhcCcCcEEEEEE
Confidence 899999998887764 35778999999997754
No 63
>PRK05785 hypothetical protein; Provisional
Probab=99.61 E-value=7.7e-15 Score=116.28 Aligned_cols=95 Identities=13% Similarity=0.092 Sum_probs=78.7
Q ss_pred CCCcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026903 108 PKGRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC 185 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~ 185 (231)
++.+|||+|||+|..+..+++. +.+|+|+|+|+++++.|++.. .++++|+.+ ++++++||+|++..+++
T Consensus 51 ~~~~VLDlGcGtG~~~~~l~~~~~~~v~gvD~S~~Ml~~a~~~~---------~~~~~d~~~lp~~d~sfD~v~~~~~l~ 121 (226)
T PRK05785 51 RPKKVLDVAAGKGELSYHFKKVFKYYVVALDYAENMLKMNLVAD---------DKVVGSFEALPFRDKSFDVVMSSFALH 121 (226)
T ss_pred CCCeEEEEcCCCCHHHHHHHHhcCCEEEEECCCHHHHHHHHhcc---------ceEEechhhCCCCCCCEEEEEecChhh
Confidence 4689999999999999999886 579999999999999998641 356788887 56778999999999999
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
|++ +..++++++.++|||. +.+.+++
T Consensus 122 ~~~--d~~~~l~e~~RvLkp~--~~ile~~ 147 (226)
T PRK05785 122 ASD--NIEKVIAEFTRVSRKQ--VGFIAMG 147 (226)
T ss_pred ccC--CHHHHHHHHHHHhcCc--eEEEEeC
Confidence 985 4578999999999994 3344444
No 64
>PRK06922 hypothetical protein; Provisional
Probab=99.61 E-value=8.7e-15 Score=128.93 Aligned_cols=106 Identities=18% Similarity=0.226 Sum_probs=88.7
Q ss_pred CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEEeC
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIFDY 181 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~i~~~ 181 (231)
.++.+|||+|||+|..+..+++ ++.+++|+|+|+.+++.|+++....+ .++.++++|..+. +++++||+|+++
T Consensus 417 ~~g~rVLDIGCGTG~ls~~LA~~~P~~kVtGIDIS~~MLe~Ararl~~~g--~~ie~I~gDa~dLp~~fedeSFDvVVsn 494 (677)
T PRK06922 417 IKGDTIVDVGAGGGVMLDMIEEETEDKRIYGIDISENVIDTLKKKKQNEG--RSWNVIKGDAINLSSSFEKESVDTIVYS 494 (677)
T ss_pred cCCCEEEEeCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHhhhcC--CCeEEEEcchHhCccccCCCCEEEEEEc
Confidence 3568999999999999988876 56799999999999999998765433 3578899998773 456789999999
Q ss_pred Cccccc-----------ChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 182 TFFCAI-----------EPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 182 ~~~~~~-----------~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.++|++ +.+...++++++.++|||||.+++.+.
T Consensus 495 ~vLH~L~syIp~~g~~f~~edl~kiLreI~RVLKPGGrLII~D~ 538 (677)
T PRK06922 495 SILHELFSYIEYEGKKFNHEVIKKGLQSAYEVLKPGGRIIIRDG 538 (677)
T ss_pred hHHHhhhhhcccccccccHHHHHHHHHHHHHHcCCCcEEEEEeC
Confidence 888865 235678999999999999999999874
No 65
>TIGR03533 L3_gln_methyl protein-(glutamine-N5) methyltransferase, ribosomal protein L3-specific. Members of this protein family methylate ribosomal protein L3 on a glutamine side chain. This family is related to HemK, a protein-glutamine methyltranferase for peptide chain release factors.
Probab=99.61 E-value=2.4e-14 Score=117.13 Aligned_cols=105 Identities=24% Similarity=0.282 Sum_probs=85.3
Q ss_pred CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc-
Q 026903 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC- 185 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~- 185 (231)
+.+|||+|||+|.++..+++ ++.+|+++|+|+.+++.|+++...++..++++++.+|+.+..+..+||+|+++..+.
T Consensus 122 ~~~vLDlG~GsG~i~~~la~~~~~~~v~avDis~~al~~A~~n~~~~~~~~~i~~~~~D~~~~~~~~~fD~Iv~NPPy~~ 201 (284)
T TIGR03533 122 VKRILDLCTGSGCIAIACAYAFPEAEVDAVDISPDALAVAEINIERHGLEDRVTLIQSDLFAALPGRKYDLIVSNPPYVD 201 (284)
T ss_pred CCEEEEEeCchhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhhccCCCCccEEEECCCCCC
Confidence 47999999999999999997 456999999999999999999988776678999999998766556899999974321
Q ss_pred -----ccCh-----------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 186 -----AIEP-----------------EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 186 -----~~~~-----------------~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
++++ +....+++.+.+.|+|||++++..
T Consensus 202 ~~~~~~l~~~~~~ep~~al~gg~dGl~~~~~il~~a~~~L~~gG~l~~e~ 251 (284)
T TIGR03533 202 AEDMADLPAEYHHEPELALASGEDGLDLVRRILAEAADHLNENGVLVVEV 251 (284)
T ss_pred ccchhhCCHhhhcCHHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 1111 233678899999999999987643
No 66
>KOG1271 consensus Methyltransferases [General function prediction only]
Probab=99.60 E-value=4.9e-15 Score=109.71 Aligned_cols=139 Identities=21% Similarity=0.294 Sum_probs=104.5
Q ss_pred ccchhhhhccCCC----------CCCCCCCcHHHHHHHHcC-C----CCC-CcEEEecCCCchHHHHhcCCCC--eEEEE
Q 026903 75 SGGWEKCWEEGLT----------PWDIGQPAPIIVHLHQSG-A----LPK-GRALVPGCGTGYDVVAMASPER--YVVGL 136 (231)
Q Consensus 75 ~~~w~~~~~~~~~----------~~~~~~~~~~~~~~~~~~-~----~~~-~~vLDiGcG~G~~~~~l~~~~~--~v~~i 136 (231)
.+||++.|..... -|.-......+..++... . .+. .+|||+|||.|.+...|++.|. ..+|+
T Consensus 18 K~yWD~~Y~~El~Nfr~hgd~GEvWFg~~ae~riv~wl~d~~~~~rv~~~A~~VlDLGtGNG~~L~~L~~egf~~~L~Gv 97 (227)
T KOG1271|consen 18 KSYWDAAYELELTNFREHGDEGEVWFGEDAEERIVDWLKDLIVISRVSKQADRVLDLGTGNGHLLFQLAKEGFQSKLTGV 97 (227)
T ss_pred HHHHHHHHHHHHhhcccCCCccceecCCcHHHHHHHHHHhhhhhhhhcccccceeeccCCchHHHHHHHHhcCCCCcccc
Confidence 4788888876211 354444444455554433 1 122 3999999999999999999665 59999
Q ss_pred eCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCcccccC--h----HHHHHHHHHHHhhcCCCcEE
Q 026903 137 EISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFCAIE--P----EMRAAWAQKIKDFLKPDGEL 209 (231)
Q Consensus 137 D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~~~~~--~----~~~~~~l~~~~~~L~pgG~l 209 (231)
|+|+++++.|+..++..+.++.|+|.+.|+.++ +..+.||+|+.-..+..++ + .-+..++..+.+.|+|||++
T Consensus 98 DYs~~AV~LA~niAe~~~~~n~I~f~q~DI~~~~~~~~qfdlvlDKGT~DAisLs~d~~~~r~~~Y~d~v~~ll~~~gif 177 (227)
T KOG1271|consen 98 DYSEKAVELAQNIAERDGFSNEIRFQQLDITDPDFLSGQFDLVLDKGTLDAISLSPDGPVGRLVVYLDSVEKLLSPGGIF 177 (227)
T ss_pred ccCHHHHHHHHHHHHhcCCCcceeEEEeeccCCcccccceeEEeecCceeeeecCCCCcccceeeehhhHhhccCCCcEE
Confidence 999999999999888888877899999999994 4567899999887776542 1 12256788899999999998
Q ss_pred EEEE
Q 026903 210 ITLM 213 (231)
Q Consensus 210 ~~~~ 213 (231)
+|..
T Consensus 178 vItS 181 (227)
T KOG1271|consen 178 VITS 181 (227)
T ss_pred EEEe
Confidence 8754
No 67
>PRK00216 ubiE ubiquinone/menaquinone biosynthesis methyltransferase; Reviewed
Probab=99.59 E-value=1.6e-14 Score=115.30 Aligned_cols=108 Identities=26% Similarity=0.309 Sum_probs=91.0
Q ss_pred CCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCc
Q 026903 108 PKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~ 183 (231)
++.+|||+|||+|.++..++..+ .+++++|+++.+++.++++....+...++.++.+|+.+. ...+.||+|++..+
T Consensus 51 ~~~~vldiG~G~G~~~~~l~~~~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~D~I~~~~~ 130 (239)
T PRK00216 51 PGDKVLDLACGTGDLAIALAKAVGKTGEVVGLDFSEGMLAVGREKLRDLGLSGNVEFVQGDAEALPFPDNSFDAVTIAFG 130 (239)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcCCCCeEEEEeCCHHHHHHHHHhhcccccccCeEEEecccccCCCCCCCccEEEEecc
Confidence 45899999999999999998744 699999999999999999886654445789999999884 34568999999999
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
+++++ +...+++.+.++|+|||.+++.++...
T Consensus 131 l~~~~--~~~~~l~~~~~~L~~gG~li~~~~~~~ 162 (239)
T PRK00216 131 LRNVP--DIDKALREMYRVLKPGGRLVILEFSKP 162 (239)
T ss_pred cccCC--CHHHHHHHHHHhccCCcEEEEEEecCC
Confidence 88885 346789999999999999998877543
No 68
>COG2264 PrmA Ribosomal protein L11 methylase [Translation, ribosomal structure and biogenesis]
Probab=99.59 E-value=8.5e-15 Score=118.41 Aligned_cols=112 Identities=25% Similarity=0.247 Sum_probs=89.0
Q ss_pred HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (231)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD 176 (231)
...++++...++.+|||+|||+|.+++..++.|+ .++|+|++|.+++.+++|...+++...++....+.......++||
T Consensus 152 cL~~Le~~~~~g~~vlDvGcGSGILaIAa~kLGA~~v~g~DiDp~AV~aa~eNa~~N~v~~~~~~~~~~~~~~~~~~~~D 231 (300)
T COG2264 152 CLEALEKLLKKGKTVLDVGCGSGILAIAAAKLGAKKVVGVDIDPQAVEAARENARLNGVELLVQAKGFLLLEVPENGPFD 231 (300)
T ss_pred HHHHHHHhhcCCCEEEEecCChhHHHHHHHHcCCceEEEecCCHHHHHHHHHHHHHcCCchhhhcccccchhhcccCccc
Confidence 4556666677889999999999999999999998 699999999999999999998876543333333444444446999
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
+|+++-. . +....+...+.+.|+|||+++++..
T Consensus 232 vIVANIL-A----~vl~~La~~~~~~lkpgg~lIlSGI 264 (300)
T COG2264 232 VIVANIL-A----EVLVELAPDIKRLLKPGGRLILSGI 264 (300)
T ss_pred EEEehhh-H----HHHHHHHHHHHHHcCCCceEEEEee
Confidence 9998652 2 3446788999999999999998774
No 69
>PRK05134 bifunctional 3-demethylubiquinone-9 3-methyltransferase/ 2-octaprenyl-6-hydroxy phenol methylase; Provisional
Probab=99.59 E-value=2.2e-14 Score=114.41 Aligned_cols=106 Identities=19% Similarity=0.218 Sum_probs=88.1
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCc
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~~ 183 (231)
..++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++...... .+++...++.+.. ..+.||+|++..+
T Consensus 46 ~~~~~~vLdiG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~fD~Ii~~~~ 123 (233)
T PRK05134 46 GLFGKRVLDVGCGGGILSESMARLGADVTGIDASEENIEVARLHALESGL--KIDYRQTTAEELAAEHPGQFDVVTCMEM 123 (233)
T ss_pred CCCCCeEEEeCCCCCHHHHHHHHcCCeEEEEcCCHHHHHHHHHHHHHcCC--ceEEEecCHHHhhhhcCCCccEEEEhhH
Confidence 34568999999999999999998888999999999999999988765432 4778888877643 4578999999999
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
++|.+. ...+++.+.+.|+|||.+++..+.
T Consensus 124 l~~~~~--~~~~l~~~~~~L~~gG~l~v~~~~ 153 (233)
T PRK05134 124 LEHVPD--PASFVRACAKLVKPGGLVFFSTLN 153 (233)
T ss_pred hhccCC--HHHHHHHHHHHcCCCcEEEEEecC
Confidence 998853 457899999999999999887653
No 70
>PRK06202 hypothetical protein; Provisional
Probab=99.58 E-value=2e-14 Score=114.61 Aligned_cols=104 Identities=16% Similarity=0.095 Sum_probs=81.8
Q ss_pred CCCcEEEecCCCchHHHHhcC----CC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEe
Q 026903 108 PKGRALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~----~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~ 180 (231)
++.+|||+|||+|.++..|++ .| .+|+|+|+++.+++.|+++.... ++.+...+... ..++++||+|++
T Consensus 60 ~~~~iLDlGcG~G~~~~~L~~~~~~~g~~~~v~gvD~s~~~l~~a~~~~~~~----~~~~~~~~~~~l~~~~~~fD~V~~ 135 (232)
T PRK06202 60 RPLTLLDIGCGGGDLAIDLARWARRDGLRLEVTAIDPDPRAVAFARANPRRP----GVTFRQAVSDELVAEGERFDVVTS 135 (232)
T ss_pred CCcEEEEeccCCCHHHHHHHHHHHhCCCCcEEEEEcCCHHHHHHHHhccccC----CCeEEEEecccccccCCCccEEEE
Confidence 457999999999999888874 23 49999999999999998875432 35566655444 224568999999
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
+.++||+++++...+++++.++++ |.+++.++..+
T Consensus 136 ~~~lhh~~d~~~~~~l~~~~r~~~--~~~~i~dl~~~ 170 (232)
T PRK06202 136 NHFLHHLDDAEVVRLLADSAALAR--RLVLHNDLIRS 170 (232)
T ss_pred CCeeecCChHHHHHHHHHHHHhcC--eeEEEeccccC
Confidence 999999988777899999999998 56666666543
No 71
>TIGR02469 CbiT precorrin-6Y C5,15-methyltransferase (decarboxylating), CbiT subunit. This model recognizes the CbiT methylase which is responsible, in part (along with CbiE), for methylating precorrin-6y (or cobalt-precorrin-6y) at both the 5 and 15 positions as well as the concomitant decarbozylation at C-12. In many organisms, this protein is fused to the CbiE subunit. The fused protein, when found in organisms catalyzing the oxidative version of the cobalamin biosynthesis pathway, is called CobL.
Probab=99.58 E-value=6.1e-14 Score=100.54 Aligned_cols=101 Identities=16% Similarity=0.078 Sum_probs=81.2
Q ss_pred CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCceeEEEeCCc
Q 026903 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~fD~i~~~~~ 183 (231)
++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++....+. .+++++.+|.... ....+||+|++...
T Consensus 19 ~~~~vldlG~G~G~~~~~l~~~~~~~~v~~vD~s~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~D~v~~~~~ 97 (124)
T TIGR02469 19 PGDVLWDIGAGSGSITIEAARLVPNGRVYAIERNPEALRLIERNARRFGV-SNIVIVEGDAPEALEDSLPEPDRVFIGGS 97 (124)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCceEEEEcCCHHHHHHHHHHHHHhCC-CceEEEeccccccChhhcCCCCEEEECCc
Confidence 3579999999999999999883 46899999999999999988766543 3688998887652 22358999998665
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.. ...++++.+.+.|+|||.+++..+
T Consensus 98 ~~-----~~~~~l~~~~~~Lk~gG~li~~~~ 123 (124)
T TIGR02469 98 GG-----LLQEILEAIWRRLRPGGRIVLNAI 123 (124)
T ss_pred ch-----hHHHHHHHHHHHcCCCCEEEEEec
Confidence 43 335889999999999999987654
No 72
>TIGR00536 hemK_fam HemK family putative methylases. The gene hemK from E. coli was found to contribute to heme biosynthesis and originally suggested to be protoporphyrinogen oxidase (Medline 95189105). Functional analysis of the nearest homolog in Saccharomyces cerevisiae, YNL063w, finds it is not protoporphyrinogen oxidase and sequence analysis suggests that HemK homologs have S-adenosyl-methionine-dependent methyltransferase activity (Medline 99237242). Homologs are found, usually in a single copy, in nearly all completed genomes, but varying somewhat in apparent domain architecture. Both E. coli and H. influenzae have two members rather than one. The members from the Mycoplasmas have an additional C-terminal domain.
Probab=99.58 E-value=5.7e-14 Score=115.15 Aligned_cols=104 Identities=24% Similarity=0.301 Sum_probs=84.2
Q ss_pred CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc---
Q 026903 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF--- 184 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~--- 184 (231)
.+|||+|||+|.++..++. ++.+|+++|+|+++++.|+++...++...+++|+++|+.+..+..+||+|+++..+
T Consensus 116 ~~vLDlG~GsG~i~l~la~~~~~~~v~avDis~~al~~a~~n~~~~~~~~~v~~~~~d~~~~~~~~~fDlIvsNPPyi~~ 195 (284)
T TIGR00536 116 LHILDLGTGSGCIALALAYEFPNAEVIAVDISPDALAVAEENAEKNQLEHRVEFIQSNLFEPLAGQKIDIIVSNPPYIDE 195 (284)
T ss_pred CEEEEEeccHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEECchhccCcCCCccEEEECCCCCCc
Confidence 6899999999999999997 45699999999999999999988777666799999999986655589999997322
Q ss_pred ----------cccCh----------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 185 ----------CAIEP----------EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ----------~~~~~----------~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
.|-|. .....+++.+.+.|+|||++++..
T Consensus 196 ~~~~~~~~~~~~eP~~AL~gg~dgl~~~~~ii~~a~~~L~~gG~l~~e~ 244 (284)
T TIGR00536 196 EDLADLPNVVRFEPLLALVGGDDGLNILRQIIELAPDYLKPNGFLVCEI 244 (284)
T ss_pred chhhcCCcccccCcHHHhcCCCcHHHHHHHHHHHHHHhccCCCEEEEEE
Confidence 11111 245678899999999999886633
No 73
>PRK08317 hypothetical protein; Provisional
Probab=99.57 E-value=6.3e-14 Score=111.76 Aligned_cols=105 Identities=29% Similarity=0.395 Sum_probs=87.4
Q ss_pred CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCC
Q 026903 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYT 182 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~ 182 (231)
.++.+|||+|||+|.++..+++. +.+++++|+++.+++.++++.... ..++++..+|+.+ ..+.++||+|++..
T Consensus 18 ~~~~~vLdiG~G~G~~~~~~a~~~~~~~~v~~~d~~~~~~~~a~~~~~~~--~~~~~~~~~d~~~~~~~~~~~D~v~~~~ 95 (241)
T PRK08317 18 QPGDRVLDVGCGPGNDARELARRVGPEGRVVGIDRSEAMLALAKERAAGL--GPNVEFVRGDADGLPFPDGSFDAVRSDR 95 (241)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHhcCCCcEEEEEeCCHHHHHHHHHHhhCC--CCceEEEecccccCCCCCCCceEEEEec
Confidence 34579999999999999999873 458999999999999999873322 2468999999887 44567899999999
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
+++|+.+ ...+++++.++|+|||.+++.+..
T Consensus 96 ~~~~~~~--~~~~l~~~~~~L~~gG~l~~~~~~ 126 (241)
T PRK08317 96 VLQHLED--PARALAEIARVLRPGGRVVVLDTD 126 (241)
T ss_pred hhhccCC--HHHHHHHHHHHhcCCcEEEEEecC
Confidence 9999853 467899999999999999987754
No 74
>PF06325 PrmA: Ribosomal protein L11 methyltransferase (PrmA); InterPro: IPR010456 This family consists of several Ribosomal protein L11 methyltransferase sequences. Its genetic determinant is prmA, which forms a bifunctional operon with the downstream panF gene []. The role of L11 methylation in ribosome function is, as yet, unknown. Deletion of the prmA gene in Escherichia coli showed no obvious effect [] except for the production of undermethylated forms of L11 []. Methylation is the most common post-transcriptional modification to ribosomal proteins in all organisms. PrmA is the only bacterial enzyme that catalyses the methylation of a ribosomal protein [].; GO: 0008276 protein methyltransferase activity, 0006479 protein methylation, 0005737 cytoplasm; PDB: 3GRZ_B 1F3L_A 2NXJ_B 3CJT_I 3CJQ_G 2NXE_A 2NXC_A 2ZBP_A 3EGV_A 3CJS_A ....
Probab=99.56 E-value=1.3e-14 Score=118.24 Aligned_cols=111 Identities=24% Similarity=0.245 Sum_probs=86.4
Q ss_pred HHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (231)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD 176 (231)
..+++++...++.+|||+|||+|.+++..++.|+ +|+++|+++.+++.|++|+..+++.+++.+. .. ......+||
T Consensus 151 cl~~l~~~~~~g~~vLDvG~GSGILaiaA~klGA~~v~a~DiDp~Av~~a~~N~~~N~~~~~~~v~--~~-~~~~~~~~d 227 (295)
T PF06325_consen 151 CLELLEKYVKPGKRVLDVGCGSGILAIAAAKLGAKKVVAIDIDPLAVEAARENAELNGVEDRIEVS--LS-EDLVEGKFD 227 (295)
T ss_dssp HHHHHHHHSSTTSEEEEES-TTSHHHHHHHHTTBSEEEEEESSCHHHHHHHHHHHHTT-TTCEEES--CT-SCTCCS-EE
T ss_pred HHHHHHHhccCCCEEEEeCCcHHHHHHHHHHcCCCeEEEecCCHHHHHHHHHHHHHcCCCeeEEEE--Ee-cccccccCC
Confidence 4555555567788999999999999999999888 8999999999999999999999888776553 22 222347899
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+|+++... +....++..+.++|+|||.|+++..-.
T Consensus 228 lvvANI~~-----~vL~~l~~~~~~~l~~~G~lIlSGIl~ 262 (295)
T PF06325_consen 228 LVVANILA-----DVLLELAPDIASLLKPGGYLILSGILE 262 (295)
T ss_dssp EEEEES-H-----HHHHHHHHHCHHHEEEEEEEEEEEEEG
T ss_pred EEEECCCH-----HHHHHHHHHHHHhhCCCCEEEEccccH
Confidence 99976554 344678888999999999999987643
No 75
>PRK00517 prmA ribosomal protein L11 methyltransferase; Reviewed
Probab=99.56 E-value=3.7e-14 Score=114.20 Aligned_cols=104 Identities=24% Similarity=0.243 Sum_probs=80.6
Q ss_pred HHHcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEE
Q 026903 101 LHQSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIF 179 (231)
Q Consensus 101 ~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~ 179 (231)
.+.....++.+|||+|||+|..+..+++.|. +|+++|+++.+++.|+++...+++.+++.+..++. +||+|+
T Consensus 112 ~l~~~~~~~~~VLDiGcGsG~l~i~~~~~g~~~v~giDis~~~l~~A~~n~~~~~~~~~~~~~~~~~-------~fD~Vv 184 (250)
T PRK00517 112 ALEKLVLPGKTVLDVGCGSGILAIAAAKLGAKKVLAVDIDPQAVEAARENAELNGVELNVYLPQGDL-------KADVIV 184 (250)
T ss_pred HHHhhcCCCCEEEEeCCcHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHcCCCceEEEccCCC-------CcCEEE
Confidence 3333345678999999999999998888776 59999999999999999988776544454443332 799999
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
++... +....++..+.++|+|||++++..+..
T Consensus 185 ani~~-----~~~~~l~~~~~~~LkpgG~lilsgi~~ 216 (250)
T PRK00517 185 ANILA-----NPLLELAPDLARLLKPGGRLILSGILE 216 (250)
T ss_pred EcCcH-----HHHHHHHHHHHHhcCCCcEEEEEECcH
Confidence 86442 334678899999999999999987644
No 76
>PRK14967 putative methyltransferase; Provisional
Probab=99.56 E-value=1e-13 Score=109.87 Aligned_cols=115 Identities=19% Similarity=0.218 Sum_probs=88.3
Q ss_pred HHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026903 97 IIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (231)
Q Consensus 97 ~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 174 (231)
.+...+.... .++.+|||+|||+|.++..+++.+. +++++|+++.+++.++++....+. ++.++.+|+.+..+.++
T Consensus 24 ~l~~~l~~~~~~~~~~vLDlGcG~G~~~~~la~~~~~~v~~vD~s~~~l~~a~~n~~~~~~--~~~~~~~d~~~~~~~~~ 101 (223)
T PRK14967 24 LLADALAAEGLGPGRRVLDLCTGSGALAVAAAAAGAGSVTAVDISRRAVRSARLNALLAGV--DVDVRRGDWARAVEFRP 101 (223)
T ss_pred HHHHHHHhcccCCCCeEEEecCCHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhCC--eeEEEECchhhhccCCC
Confidence 3445554433 3457999999999999999988665 999999999999999998876543 48899999988666678
Q ss_pred eeEEEeCCcccccCh-------------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 175 FDLIFDYTFFCAIEP-------------------EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 175 fD~i~~~~~~~~~~~-------------------~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
||+|+++..+..-+. .....+++.+.++|+|||++++..
T Consensus 102 fD~Vi~npPy~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~a~~~Lk~gG~l~~~~ 159 (223)
T PRK14967 102 FDVVVSNPPYVPAPPDAPPSRGPARAWDAGPDGRAVLDRLCDAAPALLAPGGSLLLVQ 159 (223)
T ss_pred eeEEEECCCCCCCCcccccccChhHhhhCCCcHHHHHHHHHHHHHHhcCCCcEEEEEE
Confidence 999999854432211 124568888999999999988754
No 77
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=99.56 E-value=7e-14 Score=122.75 Aligned_cols=165 Identities=18% Similarity=0.232 Sum_probs=112.9
Q ss_pred Cccccc-cccCCCChhHHHHHHHHhccccc-------cchhhhhccC--CCCCCCCCCcHHHHHHHHcC----C------
Q 026903 47 NREEVE-NDNVIKSHPRVNKLQQLMHIESS-------GGWEKCWEEG--LTPWDIGQPAPIIVHLHQSG----A------ 106 (231)
Q Consensus 47 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~----~------ 106 (231)
+...+. +...+++..+.+.+.+++.++.. -++..||... ..+ ....|++..+.+++.. .
T Consensus 39 ~~~~l~~~~~~~l~~~~~~~~~~~~~rr~~~ePlqYI~G~~~F~g~~f~V~~-~VLIPRpeTE~Lve~~l~~~~~~~~~~ 117 (506)
T PRK01544 39 PIEYLLINLDEQLNEAEIEAFEKLLERRLKHEPIAYITGVKEFYSREFIVNK-HVLIPRSDTEVLVDVVFQCHSRESGNP 117 (506)
T ss_pred CHHHHhhccCCCCCHHHHHHHHHHHHHHHcCCCHHHHhCcCEEcCcEEEeCC-CcccCCCcHHHHHHHHHHHhhhccccc
Confidence 344443 44567777777777777764433 2334444442 223 3445555544443321 0
Q ss_pred -------------------CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc
Q 026903 107 -------------------LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD 165 (231)
Q Consensus 107 -------------------~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d 165 (231)
.++.+|||+|||+|..+..++. ++.+|+++|+|+.+++.|+++...+++.++++++.+|
T Consensus 118 ~~~~~~~~~~~~~~~~~~~~~~~~VLDlG~GsG~iai~la~~~p~~~v~avDis~~al~~A~~N~~~~~l~~~v~~~~~D 197 (506)
T PRK01544 118 EKKQLNPCFRGNDISSNCNDKFLNILELGTGSGCIAISLLCELPNANVIATDISLDAIEVAKSNAIKYEVTDRIQIIHSN 197 (506)
T ss_pred cccccccccccccccccccCCCCEEEEccCchhHHHHHHHHHCCCCeEEEEECCHHHHHHHHHHHHHcCCccceeeeecc
Confidence 1235899999999999998876 5679999999999999999998877766789999999
Q ss_pred CCCCCCCCceeEEEeCCcccccC-------------h-----------HHHHHHHHHHHhhcCCCcEEEEE
Q 026903 166 FFTWCPTELFDLIFDYTFFCAIE-------------P-----------EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 166 ~~~~~~~~~fD~i~~~~~~~~~~-------------~-----------~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
+.+..+.+.||+|+++..+.... | +....+++.+.+.|+|||.+++.
T Consensus 198 ~~~~~~~~~fDlIvsNPPYi~~~~~~~l~~~v~~~EP~~AL~gg~dGl~~~~~il~~a~~~L~~gG~l~lE 268 (506)
T PRK01544 198 WFENIEKQKFDFIVSNPPYISHSEKSEMAIETINYEPSIALFAEEDGLQAYFIIAENAKQFLKPNGKIILE 268 (506)
T ss_pred hhhhCcCCCccEEEECCCCCCchhhhhcCchhhccCcHHHhcCCccHHHHHHHHHHHHHHhccCCCEEEEE
Confidence 98765556899999975332110 0 12356778888999999998763
No 78
>TIGR00080 pimt protein-L-isoaspartate(D-aspartate) O-methyltransferase. Among the prokaryotes, the gene name is pcm. Among eukaryotes, pimt.
Probab=99.56 E-value=5.6e-14 Score=110.72 Aligned_cols=106 Identities=24% Similarity=0.192 Sum_probs=83.2
Q ss_pred HHHHHcC-CCCCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCC
Q 026903 99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTE 173 (231)
Q Consensus 99 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~ 173 (231)
..+++.. ..++.+|||+|||+|+.+..+++.. .+|+++|+++.+++.|++++...+. ++++++.+|..+.. ...
T Consensus 67 ~~~~~~l~~~~~~~VLDiG~GsG~~a~~la~~~~~~g~V~~vD~~~~~~~~A~~~~~~~g~-~~v~~~~~d~~~~~~~~~ 145 (215)
T TIGR00080 67 AMMTELLELKPGMKVLEIGTGSGYQAAVLAEIVGRDGLVVSIERIPELAEKAERRLRKLGL-DNVIVIVGDGTQGWEPLA 145 (215)
T ss_pred HHHHHHhCCCCcCEEEEECCCccHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHCCC-CCeEEEECCcccCCcccC
Confidence 3344433 3355899999999999999998743 3699999999999999999887765 47999999998743 345
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
+||+|++.....+++ +.+.+.|+|||+|++..
T Consensus 146 ~fD~Ii~~~~~~~~~--------~~~~~~L~~gG~lv~~~ 177 (215)
T TIGR00080 146 PYDRIYVTAAGPKIP--------EALIDQLKEGGILVMPV 177 (215)
T ss_pred CCCEEEEcCCccccc--------HHHHHhcCcCcEEEEEE
Confidence 899999877665553 45778899999988754
No 79
>PRK00312 pcm protein-L-isoaspartate O-methyltransferase; Reviewed
Probab=99.56 E-value=1.2e-13 Score=108.70 Aligned_cols=129 Identities=25% Similarity=0.235 Sum_probs=94.4
Q ss_pred chhhhhccCCCCCCCCC--CcHHHHH-HHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc
Q 026903 77 GWEKCWEEGLTPWDIGQ--PAPIIVH-LHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152 (231)
Q Consensus 77 ~w~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~ 152 (231)
+++..|.....+|.... ..+.+.. ++.... .++.+|||+|||+|..+..+++.+.+++++|+++.+++.+++++..
T Consensus 43 ~~~~ay~d~~~~~~~~~~~~~p~~~~~l~~~l~~~~~~~VLeiG~GsG~~t~~la~~~~~v~~vd~~~~~~~~a~~~~~~ 122 (212)
T PRK00312 43 FKHKAYENRALPIGCGQTISQPYMVARMTELLELKPGDRVLEIGTGSGYQAAVLAHLVRRVFSVERIKTLQWEAKRRLKQ 122 (212)
T ss_pred HHhcCccCCCccCCCCCeeCcHHHHHHHHHhcCCCCCCEEEEECCCccHHHHHHHHHhCEEEEEeCCHHHHHHHHHHHHH
Confidence 44555665555544332 2444433 333333 3558999999999999998887666899999999999999999877
Q ss_pred CCCCCceEEEEccCCCCCC-CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 153 LPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 153 ~~~~~~i~~~~~d~~~~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.+.. ++++..+|..+..+ .++||+|++...++++ .+.+.+.|+|||.+++...
T Consensus 123 ~~~~-~v~~~~~d~~~~~~~~~~fD~I~~~~~~~~~--------~~~l~~~L~~gG~lv~~~~ 176 (212)
T PRK00312 123 LGLH-NVSVRHGDGWKGWPAYAPFDRILVTAAAPEI--------PRALLEQLKEGGILVAPVG 176 (212)
T ss_pred CCCC-ceEEEECCcccCCCcCCCcCEEEEccCchhh--------hHHHHHhcCCCcEEEEEEc
Confidence 6543 59999999877433 4689999988776655 3457789999999987654
No 80
>PRK11805 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.56 E-value=1.9e-13 Score=112.89 Aligned_cols=103 Identities=24% Similarity=0.305 Sum_probs=84.4
Q ss_pred CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc--
Q 026903 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC-- 185 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~-- 185 (231)
.+|||+|||+|.++..++. ++.+|+++|+|+.+++.|+++...++..++++++++|+.+..+..+||+|+++..+.
T Consensus 135 ~~VLDlG~GsG~iai~la~~~p~~~V~avDis~~al~~A~~n~~~~~l~~~i~~~~~D~~~~l~~~~fDlIvsNPPyi~~ 214 (307)
T PRK11805 135 TRILDLCTGSGCIAIACAYAFPDAEVDAVDISPDALAVAEINIERHGLEDRVTLIESDLFAALPGRRYDLIVSNPPYVDA 214 (307)
T ss_pred CEEEEEechhhHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCCcEEEEECchhhhCCCCCccEEEECCCCCCc
Confidence 6899999999999999987 456999999999999999999988776667999999998765556899999974321
Q ss_pred ----ccCh-----------------HHHHHHHHHHHhhcCCCcEEEEE
Q 026903 186 ----AIEP-----------------EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 186 ----~~~~-----------------~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
.+++ +....+++.+.+.|+|||.+++.
T Consensus 215 ~~~~~l~~~~~~eP~~AL~gg~dGl~~~~~i~~~a~~~L~pgG~l~~E 262 (307)
T PRK11805 215 EDMADLPAEYRHEPELALAAGDDGLDLVRRILAEAPDYLTEDGVLVVE 262 (307)
T ss_pred cchhhcCHhhccCccceeeCCCchHHHHHHHHHHHHHhcCCCCEEEEE
Confidence 1110 23467889999999999998874
No 81
>COG2518 Pcm Protein-L-isoaspartate carboxylmethyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=99.56 E-value=6.4e-14 Score=107.42 Aligned_cols=108 Identities=23% Similarity=0.251 Sum_probs=90.3
Q ss_pred HHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCce
Q 026903 98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELF 175 (231)
Q Consensus 98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~f 175 (231)
...+++.. ..++.+|||||||+|+.+..|++...+|+.+|..++..+.|++++...+.. ++.++++|... +.+..+|
T Consensus 61 vA~m~~~L~~~~g~~VLEIGtGsGY~aAvla~l~~~V~siEr~~~L~~~A~~~L~~lg~~-nV~v~~gDG~~G~~~~aPy 139 (209)
T COG2518 61 VARMLQLLELKPGDRVLEIGTGSGYQAAVLARLVGRVVSIERIEELAEQARRNLETLGYE-NVTVRHGDGSKGWPEEAPY 139 (209)
T ss_pred HHHHHHHhCCCCCCeEEEECCCchHHHHHHHHHhCeEEEEEEcHHHHHHHHHHHHHcCCC-ceEEEECCcccCCCCCCCc
Confidence 34444444 445689999999999999999997779999999999999999999888765 49999999999 5555799
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
|.|+.......+|. .+.+.||+||++++..=
T Consensus 140 D~I~Vtaaa~~vP~--------~Ll~QL~~gGrlv~PvG 170 (209)
T COG2518 140 DRIIVTAAAPEVPE--------ALLDQLKPGGRLVIPVG 170 (209)
T ss_pred CEEEEeeccCCCCH--------HHHHhcccCCEEEEEEc
Confidence 99999888887763 47888999999987543
No 82
>PRK13942 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.56 E-value=1e-13 Score=108.89 Aligned_cols=105 Identities=19% Similarity=0.144 Sum_probs=82.4
Q ss_pred HHHHHcCC-CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCC
Q 026903 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE 173 (231)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~ 173 (231)
..++.... .++.+|||+|||+|+.+..+++. +.+|+++|+++++++.+++++...+. .+++++.+|... +....
T Consensus 66 ~~~~~~l~~~~g~~VLdIG~GsG~~t~~la~~~~~~~~V~~vE~~~~~~~~a~~~l~~~g~-~~v~~~~gd~~~~~~~~~ 144 (212)
T PRK13942 66 AIMCELLDLKEGMKVLEIGTGSGYHAAVVAEIVGKSGKVVTIERIPELAEKAKKTLKKLGY-DNVEVIVGDGTLGYEENA 144 (212)
T ss_pred HHHHHHcCCCCcCEEEEECCcccHHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCC-CCeEEEECCcccCCCcCC
Confidence 33444333 35689999999999999888763 35999999999999999999877654 469999999887 33456
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
+||+|++.....+++ +.+.+.|||||+|++.
T Consensus 145 ~fD~I~~~~~~~~~~--------~~l~~~LkpgG~lvi~ 175 (212)
T PRK13942 145 PYDRIYVTAAGPDIP--------KPLIEQLKDGGIMVIP 175 (212)
T ss_pred CcCEEEECCCcccch--------HHHHHhhCCCcEEEEE
Confidence 899999887765553 3567789999998774
No 83
>KOG4300 consensus Predicted methyltransferase [General function prediction only]
Probab=99.55 E-value=2.9e-14 Score=107.72 Aligned_cols=105 Identities=21% Similarity=0.305 Sum_probs=89.2
Q ss_pred CcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceE-EEEccCCCCC--CCCceeEEEeCCccc
Q 026903 110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVS-FLKADFFTWC--PTELFDLIFDYTFFC 185 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~-~~~~d~~~~~--~~~~fD~i~~~~~~~ 185 (231)
..|||+|||+|.+-.+.-- ++..|+++|+++.+-+.+.+.+.++ ...++. |+.++.++.. +++++|.|++..++.
T Consensus 78 ~~vLEvgcGtG~Nfkfy~~~p~~svt~lDpn~~mee~~~ks~~E~-k~~~~~~fvva~ge~l~~l~d~s~DtVV~TlvLC 156 (252)
T KOG4300|consen 78 GDVLEVGCGTGANFKFYPWKPINSVTCLDPNEKMEEIADKSAAEK-KPLQVERFVVADGENLPQLADGSYDTVVCTLVLC 156 (252)
T ss_pred cceEEecccCCCCcccccCCCCceEEEeCCcHHHHHHHHHHHhhc-cCcceEEEEeechhcCcccccCCeeeEEEEEEEe
Confidence 5789999999998877653 7889999999999999999888766 334566 8999999944 788999999999987
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
-. ++..+.|+++.++|+|||++++.++...
T Consensus 157 Sv--e~~~k~L~e~~rlLRpgG~iifiEHva~ 186 (252)
T KOG4300|consen 157 SV--EDPVKQLNEVRRLLRPGGRIIFIEHVAG 186 (252)
T ss_pred cc--CCHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 76 5567889999999999999999998664
No 84
>PRK09489 rsmC 16S ribosomal RNA m2G1207 methyltransferase; Provisional
Probab=99.55 E-value=1.6e-13 Score=114.81 Aligned_cols=103 Identities=18% Similarity=0.220 Sum_probs=85.5
Q ss_pred CCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903 109 KGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~ 186 (231)
..+|||+|||+|.++..+++. +.+|+++|+++.+++.+++++..++.. .+++..|..+.. .+.||+|+++..||.
T Consensus 197 ~g~VLDlGCG~G~ls~~la~~~p~~~v~~vDis~~Al~~A~~nl~~n~l~--~~~~~~D~~~~~-~~~fDlIvsNPPFH~ 273 (342)
T PRK09489 197 KGKVLDVGCGAGVLSAVLARHSPKIRLTLSDVSAAALESSRATLAANGLE--GEVFASNVFSDI-KGRFDMIISNPPFHD 273 (342)
T ss_pred CCeEEEeccCcCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCC--CEEEEccccccc-CCCccEEEECCCccC
Confidence 468999999999999999884 458999999999999999988876543 567788877643 468999999988876
Q ss_pred c---ChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 187 I---EPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 187 ~---~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
. ......++++.+.+.|+|||.|+++..
T Consensus 274 g~~~~~~~~~~~i~~a~~~LkpgG~L~iVan 304 (342)
T PRK09489 274 GIQTSLDAAQTLIRGAVRHLNSGGELRIVAN 304 (342)
T ss_pred CccccHHHHHHHHHHHHHhcCcCCEEEEEEe
Confidence 3 235668999999999999999987653
No 85
>PRK14968 putative methyltransferase; Provisional
Probab=99.55 E-value=1.2e-13 Score=106.27 Aligned_cols=109 Identities=23% Similarity=0.330 Sum_probs=87.7
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCc-eEEEEccCCCCCCCCceeEEEeCCccc
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~-i~~~~~d~~~~~~~~~fD~i~~~~~~~ 185 (231)
.++.+|||+|||+|..+..+++.+.+++++|+++++++.++++....+..++ +.++.+|+.+......||+|+++..+.
T Consensus 22 ~~~~~vLd~G~G~G~~~~~l~~~~~~v~~~D~s~~~~~~a~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~d~vi~n~p~~ 101 (188)
T PRK14968 22 KKGDRVLEVGTGSGIVAIVAAKNGKKVVGVDINPYAVECAKCNAKLNNIRNNGVEVIRSDLFEPFRGDKFDVILFNPPYL 101 (188)
T ss_pred cCCCEEEEEccccCHHHHHHHhhcceEEEEECCHHHHHHHHHHHHHcCCCCcceEEEeccccccccccCceEEEECCCcC
Confidence 3557999999999999999999888999999999999999988766554333 889999998866666899999876543
Q ss_pred ccC-------------------hHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 186 AIE-------------------PEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 186 ~~~-------------------~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
.-. ......+++.+.++|+|||.+++...+
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~Lk~gG~~~~~~~~ 150 (188)
T PRK14968 102 PTEEEEEWDDWLNYALSGGKDGREVIDRFLDEVGRYLKPGGRILLLQSS 150 (188)
T ss_pred CCCchhhhhhhhhhhhccCcChHHHHHHHHHHHHHhcCCCeEEEEEEcc
Confidence 311 233467899999999999998876543
No 86
>TIGR01934 MenG_MenH_UbiE ubiquinone/menaquinone biosynthesis methyltransferases. Note that a number of non-orthologous genes which are members of pfam03737 have been erroneously annotated as MenG methyltransferases.
Probab=99.55 E-value=8.2e-14 Score=110.03 Aligned_cols=104 Identities=22% Similarity=0.263 Sum_probs=88.0
Q ss_pred CCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCc
Q 026903 108 PKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~ 183 (231)
++.+|||+|||+|..+..+++.. .+++++|+++.+++.++++.. ...+++++.+|+.+. .+.++||+|++..+
T Consensus 39 ~~~~vldiG~G~G~~~~~~~~~~~~~~~~~~iD~~~~~~~~~~~~~~---~~~~i~~~~~d~~~~~~~~~~~D~i~~~~~ 115 (223)
T TIGR01934 39 KGQKVLDVACGTGDLAIELAKSAPDRGKVTGVDFSSEMLEVAKKKSE---LPLNIEFIQADAEALPFEDNSFDAVTIAFG 115 (223)
T ss_pred CCCeEEEeCCCCChhHHHHHHhcCCCceEEEEECCHHHHHHHHHHhc---cCCCceEEecchhcCCCCCCcEEEEEEeee
Confidence 56899999999999999998743 389999999999999998775 234689999999883 44568999999999
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+++++ +...+++.+.+.|+|||.+++.++..
T Consensus 116 ~~~~~--~~~~~l~~~~~~L~~gG~l~~~~~~~ 146 (223)
T TIGR01934 116 LRNVT--DIQKALREMYRVLKPGGRLVILEFSK 146 (223)
T ss_pred eCCcc--cHHHHHHHHHHHcCCCcEEEEEEecC
Confidence 88874 45689999999999999999988754
No 87
>TIGR00091 tRNA (guanine-N(7)-)-methyltransferase. In E. coli, this protein flanks the DNA repair protein MutY, also called micA.
Probab=99.55 E-value=3.3e-14 Score=110.25 Aligned_cols=104 Identities=19% Similarity=0.209 Sum_probs=83.3
Q ss_pred CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----CCCCceeEEEeCC
Q 026903 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLIFDYT 182 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~fD~i~~~~ 182 (231)
..+|||||||+|.++..+++ +..+++|+|+++.+++.|+++....++. +++++++|+.+. .+.+.+|.|+++.
T Consensus 17 ~~~ilDiGcG~G~~~~~la~~~p~~~v~gvD~~~~~l~~a~~~~~~~~l~-ni~~i~~d~~~~~~~~~~~~~~d~v~~~~ 95 (194)
T TIGR00091 17 APLHLEIGCGKGRFLIDMAKQNPDKNFLGIEIHTPIVLAANNKANKLGLK-NLHVLCGDANELLDKFFPDGSLSKVFLNF 95 (194)
T ss_pred CceEEEeCCCccHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHhCCC-CEEEEccCHHHHHHhhCCCCceeEEEEEC
Confidence 46999999999999999998 4669999999999999999887766543 799999999762 3456899999876
Q ss_pred cccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903 183 FFCAIEPE------MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 183 ~~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
...+.... ....+++.+.++|||||.|++.+
T Consensus 96 pdpw~k~~h~~~r~~~~~~l~~~~r~LkpgG~l~~~t 132 (194)
T TIGR00091 96 PDPWPKKRHNKRRITQPHFLKEYANVLKKGGVIHFKT 132 (194)
T ss_pred CCcCCCCCccccccCCHHHHHHHHHHhCCCCEEEEEe
Confidence 54432111 11578999999999999998865
No 88
>COG4123 Predicted O-methyltransferase [General function prediction only]
Probab=99.55 E-value=4.3e-14 Score=111.52 Aligned_cols=107 Identities=26% Similarity=0.309 Sum_probs=90.7
Q ss_pred CCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEeCCc
Q 026903 109 KGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFDYTF 183 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~i~~~~~ 183 (231)
.++|||+|||+|..++.++++ . .+++++|+.+++.+.|+++...+++.+++++++.|+.+.. ...+||+|+|+..
T Consensus 45 ~~~IlDlGaG~G~l~L~la~r~~~a~I~~VEiq~~~a~~A~~nv~ln~l~~ri~v~~~Di~~~~~~~~~~~fD~Ii~NPP 124 (248)
T COG4123 45 KGRILDLGAGNGALGLLLAQRTEKAKIVGVEIQEEAAEMAQRNVALNPLEERIQVIEADIKEFLKALVFASFDLIICNPP 124 (248)
T ss_pred CCeEEEecCCcCHHHHHHhccCCCCcEEEEEeCHHHHHHHHHHHHhCcchhceeEehhhHHHhhhcccccccCEEEeCCC
Confidence 589999999999999999985 3 6999999999999999999999889999999999999943 2346999999977
Q ss_pred ccccChH----------------HHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 184 FCAIEPE----------------MRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 184 ~~~~~~~----------------~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
++-.... ..+.+++...++|||||.+.++.-+
T Consensus 125 yf~~~~~~~~~~~~~~Ar~e~~~~le~~i~~a~~~lk~~G~l~~V~r~ 172 (248)
T COG4123 125 YFKQGSRLNENPLRAIARHEITLDLEDLIRAAAKLLKPGGRLAFVHRP 172 (248)
T ss_pred CCCCccccCcChhhhhhhhhhcCCHHHHHHHHHHHccCCCEEEEEecH
Confidence 6543221 2378999999999999999887643
No 89
>PRK08287 cobalt-precorrin-6Y C(15)-methyltransferase; Validated
Probab=99.54 E-value=7.8e-14 Score=107.55 Aligned_cols=100 Identities=17% Similarity=0.081 Sum_probs=81.3
Q ss_pred CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903 107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~ 184 (231)
.++.+|||+|||+|..+..+++. +.+|+++|+++.+++.++++....+. .+++++.+|..... .+.||+|++....
T Consensus 30 ~~~~~vLDiG~G~G~~~~~la~~~~~~~v~~vD~s~~~~~~a~~n~~~~~~-~~i~~~~~d~~~~~-~~~~D~v~~~~~~ 107 (187)
T PRK08287 30 HRAKHLIDVGAGTGSVSIEAALQFPSLQVTAIERNPDALRLIKENRQRFGC-GNIDIIPGEAPIEL-PGKADAIFIGGSG 107 (187)
T ss_pred CCCCEEEEECCcCCHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHhCC-CCeEEEecCchhhc-CcCCCEEEECCCc
Confidence 35589999999999999999873 46999999999999999998876654 36899999876543 3579999987665
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
.++ ..+++.+.+.|+|||++++..
T Consensus 108 ~~~-----~~~l~~~~~~Lk~gG~lv~~~ 131 (187)
T PRK08287 108 GNL-----TAIIDWSLAHLHPGGRLVLTF 131 (187)
T ss_pred cCH-----HHHHHHHHHhcCCCeEEEEEE
Confidence 443 457889999999999997754
No 90
>PRK14966 unknown domain/N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase fusion protein; Provisional
Probab=99.54 E-value=2.7e-13 Score=114.65 Aligned_cols=163 Identities=21% Similarity=0.259 Sum_probs=106.6
Q ss_pred CCccccc-cccCCCChhHHHHHHHHhccccc-------cchhhhhccC--CCCCCCCCCcHHHHHHHHcC---CCCCCcE
Q 026903 46 KNREEVE-NDNVIKSHPRVNKLQQLMHIESS-------GGWEKCWEEG--LTPWDIGQPAPIIVHLHQSG---ALPKGRA 112 (231)
Q Consensus 46 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-------~~w~~~~~~~--~~~~~~~~~~~~~~~~~~~~---~~~~~~v 112 (231)
.+..++. +...+++..+.+++.+++.++.. .....+|... ..+ ....|++..+.+++.. ..++.+|
T Consensus 177 ~~r~~l~~~~~~~l~~~~~~~~~~~v~RR~~gePlqYIlG~~~F~G~~f~V~p-~vLIPRpeTE~LVe~aL~~l~~~~rV 255 (423)
T PRK14966 177 YTRVQLLTRGGEEMPDEVRQRADRLAQRRLNGEPVAYILGVREFYGRRFAVNP-NVLIPRPETEHLVEAVLARLPENGRV 255 (423)
T ss_pred cCHHHHhhCCcccCCHHHHHHHHHHHHHHHcCCCceeEeeeeeecCcEEEeCC-CccCCCccHHHHHHHhhhccCCCCEE
Confidence 3334433 44566777777777776654422 1223333321 111 1223454444444432 2244799
Q ss_pred EEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-C-CCCceeEEEeCCcccccC
Q 026903 113 LVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-C-PTELFDLIFDYTFFCAIE 188 (231)
Q Consensus 113 LDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~-~~~~fD~i~~~~~~~~~~ 188 (231)
||+|||+|..+..++. ++.+|+++|+|+++++.|+++...++ .+++++++|+.+. . ..++||+|+|+..+..-.
T Consensus 256 LDLGcGSG~IaiaLA~~~p~a~VtAVDiS~~ALe~AreNa~~~g--~rV~fi~gDl~e~~l~~~~~FDLIVSNPPYI~~~ 333 (423)
T PRK14966 256 WDLGTGSGAVAVTVALERPDAFVRASDISPPALETARKNAADLG--ARVEFAHGSWFDTDMPSEGKWDIIVSNPPYIENG 333 (423)
T ss_pred EEEeChhhHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEcchhccccccCCCccEEEECCCCCCcc
Confidence 9999999999998885 56799999999999999999987765 3699999999773 2 245799999986542110
Q ss_pred ------------h-----------HHHHHHHHHHHhhcCCCcEEEE
Q 026903 189 ------------P-----------EMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 189 ------------~-----------~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
| +....+++.+.+.|+|||.+++
T Consensus 334 e~~l~~~~v~~EP~~AL~gG~dGL~~yr~Ii~~a~~~LkpgG~lil 379 (423)
T PRK14966 334 DKHLLQGDLRFEPQIALTDFSDGLSCIRTLAQGAPDRLAEGGFLLL 379 (423)
T ss_pred hhhhcchhhhcCHHHHhhCCCchHHHHHHHHHHHHHhcCCCcEEEE
Confidence 0 1235777788889999998765
No 91
>TIGR03534 RF_mod_PrmC protein-(glutamine-N5) methyltransferase, release factor-specific. Members of this protein family are HemK (PrmC), a protein once thought to be involved in heme biosynthesis but now recognized to be a protein-glutamine methyltransferase that modifies the peptide chain release factors. All members of the seed alignment are encoded next to the release factor 1 gene (prfA) and confirmed by phylogenetic analysis. SIMBAL analysis (manuscript in prep.) shows the motif [LIV]PRx[DE]TE (in Escherichia coli, IPRPDTE) confers specificity for the release factors rather than for ribosomal protein L3.
Probab=99.54 E-value=2.2e-13 Score=109.67 Aligned_cols=115 Identities=27% Similarity=0.354 Sum_probs=88.5
Q ss_pred HHHHHHcCCCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (231)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f 175 (231)
+..++......+.+|||+|||+|.++..++. ++.+++++|+++.+++.++++....+.. ++.++.+|+.+..+.++|
T Consensus 77 ~~~~l~~~~~~~~~ilDig~G~G~~~~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~-~~~~~~~d~~~~~~~~~f 155 (251)
T TIGR03534 77 VEAALERLKKGPLRVLDLGTGSGAIALALAKERPDARVTAVDISPEALAVARKNAARLGLD-NVTFLQSDWFEPLPGGKF 155 (251)
T ss_pred HHHHHHhcccCCCeEEEEeCcHhHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhccCcCCce
Confidence 3344443333446999999999999999998 3569999999999999999988766543 699999999886667789
Q ss_pred eEEEeCCcccc------cChHH------------------HHHHHHHHHhhcCCCcEEEEEE
Q 026903 176 DLIFDYTFFCA------IEPEM------------------RAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 176 D~i~~~~~~~~------~~~~~------------------~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
|+|+++..+.. +.++. ...+++.+.++|+|||.+++..
T Consensus 156 D~Vi~npPy~~~~~~~~~~~~~~~~e~~~~~~~~~~~~~~~~~~i~~~~~~L~~gG~~~~~~ 217 (251)
T TIGR03534 156 DLIVSNPPYIPEADIHLLDPEVRFHEPRLALFGGEDGLDFYRRIIAQAPRLLKPGGWLLLEI 217 (251)
T ss_pred eEEEECCCCCchhhhhhcChhhhhcCCHHHHcCCCcHHHHHHHHHHHHHHhcccCCEEEEEE
Confidence 99999755432 21111 2478899999999999987753
No 92
>TIGR03438 probable methyltransferase. This model represents a distinct set of uncharacterized proteins found in the bacteria. Analysis by PSI-BLAST shows remote sequence homology to methyltransferases
Probab=99.53 E-value=1.2e-13 Score=114.19 Aligned_cols=106 Identities=21% Similarity=0.185 Sum_probs=83.4
Q ss_pred CCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCC----ceeEE
Q 026903 108 PKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTE----LFDLI 178 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~----~fD~i 178 (231)
++.+|||+|||+|..+..|++. +.+|+++|+|+++++.+++++....-..++.++++|+.+. .+.. ...++
T Consensus 63 ~~~~iLELGcGtG~~t~~Ll~~l~~~~~~~~iDiS~~mL~~a~~~l~~~~p~~~v~~i~gD~~~~~~~~~~~~~~~~~~~ 142 (301)
T TIGR03438 63 AGCELVELGSGSSRKTRLLLDALRQPARYVPIDISADALKESAAALAADYPQLEVHGICADFTQPLALPPEPAAGRRLGF 142 (301)
T ss_pred CCCeEEecCCCcchhHHHHHHhhccCCeEEEEECCHHHHHHHHHHHHhhCCCceEEEEEEcccchhhhhcccccCCeEEE
Confidence 4479999999999999999874 5799999999999999988765422123477889999873 2221 23455
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
++...++++++++...+++++.++|+|||.+++..
T Consensus 143 ~~gs~~~~~~~~e~~~~L~~i~~~L~pgG~~lig~ 177 (301)
T TIGR03438 143 FPGSTIGNFTPEEAVAFLRRIRQLLGPGGGLLIGV 177 (301)
T ss_pred EecccccCCCHHHHHHHHHHHHHhcCCCCEEEEec
Confidence 55577889999899999999999999999987644
No 93
>PRK09328 N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase; Provisional
Probab=99.53 E-value=5.1e-13 Score=109.09 Aligned_cols=105 Identities=27% Similarity=0.354 Sum_probs=83.0
Q ss_pred CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903 107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~ 184 (231)
.++.+|||+|||+|..+..++.. ..+++++|+++.+++.++++.. .....++.++.+|+.+..+.++||+|+++..+
T Consensus 107 ~~~~~vLDiG~GsG~~~~~la~~~~~~~v~~iDis~~~l~~a~~n~~-~~~~~~i~~~~~d~~~~~~~~~fD~Iv~npPy 185 (275)
T PRK09328 107 KEPLRVLDLGTGSGAIALALAKERPDAEVTAVDISPEALAVARRNAK-HGLGARVEFLQGDWFEPLPGGRFDLIVSNPPY 185 (275)
T ss_pred cCCCEEEEEcCcHHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHH-hCCCCcEEEEEccccCcCCCCceeEEEECCCc
Confidence 34579999999999999999883 4699999999999999999886 22335799999999886656789999997543
Q ss_pred cc------cCh------------------HHHHHHHHHHHhhcCCCcEEEEE
Q 026903 185 CA------IEP------------------EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 185 ~~------~~~------------------~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
.- +.+ +....+++.+.++|+|||.+++.
T Consensus 186 ~~~~~~~~~~~~v~~~ep~~al~~g~~g~~~~~~~~~~~~~~Lk~gG~l~~e 237 (275)
T PRK09328 186 IPEADIHLLQPEVRDHEPHLALFGGEDGLDFYRRIIEQAPRYLKPGGWLLLE 237 (275)
T ss_pred CCcchhhhCCchhhhcCCchhhcCCCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 21 111 22367888899999999998874
No 94
>PF00891 Methyltransf_2: O-methyltransferase; InterPro: IPR001077 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. This domain includes a range of O-methyltransferases some of which utilise S-adenosyl methionine as substrate []. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. In eukaryotes, DNA methylation has been implicated in the control of several cellular processes, including differentiation, gene regulation, and embryonic development. O-methyltransferases have a common catalytic domain structure, which might be universal among S-adenosyl-L-methionine (AdoMet)-dependent methyltransferases []. Comparative analysis of the predicted amino acid sequences of a number of plant O-methyltransferase cDNA clones show that they share some 32-71% sequence identity, and can be grouped according to the different compounds they utilise as substrates [].; GO: 0008171 O-methyltransferase activity; PDB: 1FPQ_A 1FP1_D 3P9K_B 3P9I_D 3P9C_A 3I53_A 3I5U_A 3I64_A 3I58_A 1ZG3_A ....
Probab=99.53 E-value=7.8e-14 Score=111.80 Aligned_cols=104 Identities=25% Similarity=0.353 Sum_probs=89.7
Q ss_pred CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 187 (231)
.+|+|||+|.|.++..+++ ++.+++.+|. |++++.+++ .++++++.+|+++..|. +|+++..+++|++
T Consensus 102 ~~vvDvGGG~G~~~~~l~~~~P~l~~~v~Dl-p~v~~~~~~-------~~rv~~~~gd~f~~~P~--~D~~~l~~vLh~~ 171 (241)
T PF00891_consen 102 KTVVDVGGGSGHFAIALARAYPNLRATVFDL-PEVIEQAKE-------ADRVEFVPGDFFDPLPV--ADVYLLRHVLHDW 171 (241)
T ss_dssp SEEEEET-TTSHHHHHHHHHSTTSEEEEEE--HHHHCCHHH-------TTTEEEEES-TTTCCSS--ESEEEEESSGGGS
T ss_pred cEEEeccCcchHHHHHHHHHCCCCcceeecc-Hhhhhcccc-------ccccccccccHHhhhcc--ccceeeehhhhhc
Confidence 6899999999999999988 7789999999 889998888 36899999999987766 9999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCC--cEEEEEEccCCCCCCCC
Q 026903 188 EPEMRAAWAQKIKDFLKPD--GELITLMFPISDHVGGP 223 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pg--G~l~~~~~~~~~~~~~~ 223 (231)
++++..++|+++++.|+|| |+|+|.++-.+....++
T Consensus 172 ~d~~~~~iL~~~~~al~pg~~g~llI~e~~~~~~~~~~ 209 (241)
T PF00891_consen 172 SDEDCVKILRNAAAALKPGKDGRLLIIEMVLPDDRTGP 209 (241)
T ss_dssp -HHHHHHHHHHHHHHSEECTTEEEEEEEEEECSSSSSH
T ss_pred chHHHHHHHHHHHHHhCCCCCCeEEEEeeccCCCCCCc
Confidence 9999999999999999999 99999998776654444
No 95
>PRK00377 cbiT cobalt-precorrin-6Y C(15)-methyltransferase; Provisional
Probab=99.49 E-value=7.5e-13 Score=102.98 Aligned_cols=101 Identities=19% Similarity=0.137 Sum_probs=81.8
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeC
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDY 181 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~ 181 (231)
.++.+|||+|||+|.++..+++ .+.+|+++|+++.+++.++++....++.+++.++.+|..+.. ....||.|++.
T Consensus 39 ~~~~~vlDlG~GtG~~s~~~a~~~~~~~~v~avD~~~~~~~~a~~n~~~~g~~~~v~~~~~d~~~~l~~~~~~~D~V~~~ 118 (198)
T PRK00377 39 RKGDMILDIGCGTGSVTVEASLLVGETGKVYAVDKDEKAINLTRRNAEKFGVLNNIVLIKGEAPEILFTINEKFDRIFIG 118 (198)
T ss_pred CCcCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHhCCCCCeEEEEechhhhHhhcCCCCCEEEEC
Confidence 4568999999999999998865 346899999999999999999887765567999999987732 23579999975
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
... .....+++.+.+.|+|||++++.
T Consensus 119 ~~~-----~~~~~~l~~~~~~LkpgG~lv~~ 144 (198)
T PRK00377 119 GGS-----EKLKEIISASWEIIKKGGRIVID 144 (198)
T ss_pred CCc-----ccHHHHHHHHHHHcCCCcEEEEE
Confidence 421 33467899999999999999763
No 96
>COG2813 RsmC 16S RNA G1207 methylase RsmC [Translation, ribosomal structure and biogenesis]
Probab=99.48 E-value=1.1e-12 Score=105.61 Aligned_cols=121 Identities=19% Similarity=0.219 Sum_probs=94.9
Q ss_pred CCCcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903 92 GQPAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (231)
Q Consensus 92 ~~~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 168 (231)
.....-.+-+++.+.. ...+|||+|||.|.++..+++ +..+++-+|.|..+++.+++++..+.... ..++..|+.+
T Consensus 141 ~~lD~GS~lLl~~l~~~~~~~vlDlGCG~Gvlg~~la~~~p~~~vtmvDvn~~Av~~ar~Nl~~N~~~~-~~v~~s~~~~ 219 (300)
T COG2813 141 DKLDKGSRLLLETLPPDLGGKVLDLGCGYGVLGLVLAKKSPQAKLTLVDVNARAVESARKNLAANGVEN-TEVWASNLYE 219 (300)
T ss_pred CCcChHHHHHHHhCCccCCCcEEEeCCCccHHHHHHHHhCCCCeEEEEecCHHHHHHHHHhHHHcCCCc-cEEEEecccc
Confidence 3333334445554433 346999999999999999998 45699999999999999999998876543 2678888888
Q ss_pred CCCCCceeEEEeCCcccc---cChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 169 WCPTELFDLIFDYTFFCA---IEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 169 ~~~~~~fD~i~~~~~~~~---~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
...+ +||+|+|+..||. +......++++...+.|++||.|.++..
T Consensus 220 ~v~~-kfd~IisNPPfh~G~~v~~~~~~~~i~~A~~~L~~gGeL~iVan 267 (300)
T COG2813 220 PVEG-KFDLIISNPPFHAGKAVVHSLAQEIIAAAARHLKPGGELWIVAN 267 (300)
T ss_pred cccc-cccEEEeCCCccCCcchhHHHHHHHHHHHHHhhccCCEEEEEEc
Confidence 6655 8999999988875 2234446899999999999999988776
No 97
>TIGR01983 UbiG ubiquinone biosynthesis O-methyltransferase. This model represents an O-methyltransferase believed to act at two points in the ubiquinone biosynthetic pathway in bacteria (UbiG) and fungi (COQ3). A separate methylase (MenG/UbiE) catalyzes the single C-methylation step. The most commonly used names for genes in this family do not indicate whether this gene is an O-methyl, or C-methyl transferase.
Probab=99.48 E-value=3.7e-13 Score=106.58 Aligned_cols=105 Identities=20% Similarity=0.217 Sum_probs=87.3
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeCCccc
Q 026903 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFFC 185 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~~~~~ 185 (231)
.+.+|||+|||+|.++..+++.+..++++|+++.+++.++++....+. .++++...|+.+... .++||+|++..+++
T Consensus 45 ~~~~vLdlG~G~G~~~~~l~~~~~~v~~iD~s~~~~~~a~~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~D~i~~~~~l~ 123 (224)
T TIGR01983 45 FGLRVLDVGCGGGLLSEPLARLGANVTGIDASEENIEVAKLHAKKDPL-LKIEYRCTSVEDLAEKGAKSFDVVTCMEVLE 123 (224)
T ss_pred CCCeEEEECCCCCHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHcCC-CceEEEeCCHHHhhcCCCCCccEEEehhHHH
Confidence 467999999999999999988788899999999999999998765432 158888888877332 36899999999999
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
|+. ....+++.+.+.|+|||.+++....
T Consensus 124 ~~~--~~~~~l~~~~~~L~~gG~l~i~~~~ 151 (224)
T TIGR01983 124 HVP--DPQAFIRACAQLLKPGGILFFSTIN 151 (224)
T ss_pred hCC--CHHHHHHHHHHhcCCCcEEEEEecC
Confidence 885 3457899999999999999887653
No 98
>PRK14121 tRNA (guanine-N(7)-)-methyltransferase; Provisional
Probab=99.47 E-value=7.7e-13 Score=111.19 Aligned_cols=105 Identities=19% Similarity=0.206 Sum_probs=85.8
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCC
Q 026903 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYT 182 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~ 182 (231)
.+..+||||||+|.++..+|+ +...++|+|+++.+++.+.+++...++ .++.++++|+.. ..+++++|.|++++
T Consensus 122 ~~p~vLEIGcGsG~~ll~lA~~~P~~~~iGIEI~~~~i~~a~~ka~~~gL-~NV~~i~~DA~~ll~~~~~~s~D~I~lnF 200 (390)
T PRK14121 122 QEKILIEIGFGSGRHLLYQAKNNPNKLFIGIEIHTPSIEQVLKQIELLNL-KNLLIINYDARLLLELLPSNSVEKIFVHF 200 (390)
T ss_pred CCCeEEEEcCcccHHHHHHHHhCCCCCEEEEECCHHHHHHHHHHHHHcCC-CcEEEEECCHHHhhhhCCCCceeEEEEeC
Confidence 346999999999999999998 567999999999999999988877655 469999999865 46678999999876
Q ss_pred cccccChH----HHHHHHHHHHhhcCCCcEEEEEE
Q 026903 183 FFCAIEPE----MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 183 ~~~~~~~~----~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
...|.-.. ....+++.+.++|+|||.+.+.+
T Consensus 201 PdPW~KkrHRRlv~~~fL~e~~RvLkpGG~l~l~T 235 (390)
T PRK14121 201 PVPWDKKPHRRVISEDFLNEALRVLKPGGTLELRT 235 (390)
T ss_pred CCCccccchhhccHHHHHHHHHHHcCCCcEEEEEE
Confidence 55442211 12689999999999999998855
No 99
>TIGR01177 conserved hypothetical protein TIGR01177. This family is found exclusively in the Archaea.
Probab=99.47 E-value=1e-12 Score=109.98 Aligned_cols=106 Identities=17% Similarity=0.123 Sum_probs=86.9
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCCCceeEEEeCCccc
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPTELFDLIFDYTFFC 185 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~~~fD~i~~~~~~~ 185 (231)
.++.+|||+|||+|.++..++..+.+++|+|+++.++..+++++...+..+ ++++.+|+.+. .+.+.||+|+++..+.
T Consensus 181 ~~g~~vLDp~cGtG~~lieaa~~~~~v~g~Di~~~~~~~a~~nl~~~g~~~-i~~~~~D~~~l~~~~~~~D~Iv~dPPyg 259 (329)
T TIGR01177 181 TEGDRVLDPFCGTGGFLIEAGLMGAKVIGCDIDWKMVAGARINLEHYGIED-FFVKRGDATKLPLSSESVDAIATDPPYG 259 (329)
T ss_pred CCcCEEEECCCCCCHHHHHHHHhCCeEEEEcCCHHHHHHHHHHHHHhCCCC-CeEEecchhcCCcccCCCCEEEECCCCc
Confidence 355799999999999999888888999999999999999999988776554 88999999984 3456899999975442
Q ss_pred c-------cChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 186 A-------IEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 186 ~-------~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
. ...+...++++.+.+.|+|||++++..
T Consensus 260 ~~~~~~~~~~~~l~~~~l~~~~r~Lk~gG~lv~~~ 294 (329)
T TIGR01177 260 RSTTAAGDGLESLYERSLEEFHEVLKSEGWIVYAV 294 (329)
T ss_pred CcccccCCchHHHHHHHHHHHHHHccCCcEEEEEE
Confidence 2 111345789999999999999987764
No 100
>PRK04266 fibrillarin; Provisional
Probab=99.46 E-value=1.2e-12 Score=103.51 Aligned_cols=99 Identities=20% Similarity=0.197 Sum_probs=76.4
Q ss_pred CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEEe
Q 026903 107 LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~i~~ 180 (231)
.++.+|||+|||+|.++..+++. ...|+++|+++++++.+.+++... .++.++.+|..++. ..+.||+|++
T Consensus 71 ~~g~~VlD~G~G~G~~~~~la~~v~~g~V~avD~~~~ml~~l~~~a~~~---~nv~~i~~D~~~~~~~~~l~~~~D~i~~ 147 (226)
T PRK04266 71 KKGSKVLYLGAASGTTVSHVSDIVEEGVVYAVEFAPRPMRELLEVAEER---KNIIPILADARKPERYAHVVEKVDVIYQ 147 (226)
T ss_pred CCCCEEEEEccCCCHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHhhhc---CCcEEEECCCCCcchhhhccccCCEEEE
Confidence 35579999999999999999884 358999999999999877766543 46899999987631 1346999995
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
... .+.....+++++.++|||||.+++.
T Consensus 148 d~~----~p~~~~~~L~~~~r~LKpGG~lvI~ 175 (226)
T PRK04266 148 DVA----QPNQAEIAIDNAEFFLKDGGYLLLA 175 (226)
T ss_pred CCC----ChhHHHHHHHHHHHhcCCCcEEEEE
Confidence 422 1233355789999999999999984
No 101
>PRK11188 rrmJ 23S rRNA methyltransferase J; Provisional
Probab=99.45 E-value=9e-13 Score=103.23 Aligned_cols=99 Identities=15% Similarity=0.125 Sum_probs=76.4
Q ss_pred CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---------CCCCc
Q 026903 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---------CPTEL 174 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---------~~~~~ 174 (231)
.++.+|||+|||+|.++..+++. +..|+++|+++. .. . .+++++++|+.+. ...++
T Consensus 50 ~~~~~VLDlG~GtG~~t~~l~~~~~~~~~V~aVDi~~~---------~~--~-~~v~~i~~D~~~~~~~~~i~~~~~~~~ 117 (209)
T PRK11188 50 KPGMTVVDLGAAPGGWSQYAVTQIGDKGRVIACDILPM---------DP--I-VGVDFLQGDFRDELVLKALLERVGDSK 117 (209)
T ss_pred CCCCEEEEEcccCCHHHHHHHHHcCCCceEEEEecccc---------cC--C-CCcEEEecCCCChHHHHHHHHHhCCCC
Confidence 35579999999999999988873 358999999881 11 1 3589999999983 34578
Q ss_pred eeEEEeCCcccccChH---------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 175 FDLIFDYTFFCAIEPE---------MRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 175 fD~i~~~~~~~~~~~~---------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
||+|++..+.++.... ....+++.+.++|+|||.+++..|..+
T Consensus 118 ~D~V~S~~~~~~~g~~~~d~~~~~~~~~~~L~~~~~~LkpGG~~vi~~~~~~ 169 (209)
T PRK11188 118 VQVVMSDMAPNMSGTPAVDIPRAMYLVELALDMCRDVLAPGGSFVVKVFQGE 169 (209)
T ss_pred CCEEecCCCCccCCChHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEEecCc
Confidence 9999998765553221 125689999999999999999887654
No 102
>cd02440 AdoMet_MTases S-adenosylmethionine-dependent methyltransferases (SAM or AdoMet-MTase), class I; AdoMet-MTases are enzymes that use S-adenosyl-L-methionine (SAM or AdoMet) as a substrate for methyltransfer, creating the product S-adenosyl-L-homocysteine (AdoHcy). There are at least five structurally distinct families of AdoMet-MTases, class I being the largest and most diverse. Within this class enzymes can be classified by different substrate specificities (small molecules, lipids, nucleic acids, etc.) and different target atoms for methylation (nitrogen, oxygen, carbon, sulfur, etc.).
Probab=99.45 E-value=2.5e-12 Score=88.33 Aligned_cols=100 Identities=34% Similarity=0.454 Sum_probs=83.0
Q ss_pred cEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCccccc
Q 026903 111 RALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFFCAI 187 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~~~~~~ 187 (231)
+|+|+|||.|.++..+++ .+.+++++|+++..++.+++..... ...++.++..|+.+.. ...+||+|++..+++++
T Consensus 1 ~ildig~G~G~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~d~i~~~~~~~~~ 79 (107)
T cd02440 1 RVLDLGCGTGALALALASGPGARVTGVDISPVALELARKAAAAL-LADNVEVLKGDAEELPPEADESFDVIISDPPLHHL 79 (107)
T ss_pred CeEEEcCCccHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHhcc-cccceEEEEcChhhhccccCCceEEEEEccceeeh
Confidence 589999999999999998 6679999999999999988533222 2346899999999854 45689999999998874
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 188 EPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
.+....+++.+.+.|+|||.+++.
T Consensus 80 -~~~~~~~l~~~~~~l~~~g~~~~~ 103 (107)
T cd02440 80 -VEDLARFLEEARRLLKPGGVLVLT 103 (107)
T ss_pred -hhHHHHHHHHHHHHcCCCCEEEEE
Confidence 367788999999999999998765
No 103
>PF05891 Methyltransf_PK: AdoMet dependent proline di-methyltransferase; InterPro: IPR008576 This family consists of several eukaryotic proteins of unknown function that are S-adenosyl-L-methionine-dependent methyltransferase-like.; GO: 0008168 methyltransferase activity; PDB: 1XTP_A 2EX4_B.
Probab=99.45 E-value=1e-12 Score=101.21 Aligned_cols=106 Identities=22% Similarity=0.226 Sum_probs=82.3
Q ss_pred CcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-CceeEEEeCCccccc
Q 026903 110 GRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCAI 187 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD~i~~~~~~~~~ 187 (231)
.+.||.|+|-|+.+..++.+ ..+|-.+|+.+..++.|++.+.... ..-.++++..+.++.|. .+||+|++.+++.|+
T Consensus 57 ~~alDcGAGIGRVTk~lLl~~f~~VDlVEp~~~Fl~~a~~~l~~~~-~~v~~~~~~gLQ~f~P~~~~YDlIW~QW~lghL 135 (218)
T PF05891_consen 57 NRALDCGAGIGRVTKGLLLPVFDEVDLVEPVEKFLEQAKEYLGKDN-PRVGEFYCVGLQDFTPEEGKYDLIWIQWCLGHL 135 (218)
T ss_dssp SEEEEET-TTTHHHHHTCCCC-SEEEEEES-HHHHHHHHHHTCCGG-CCEEEEEES-GGG----TT-EEEEEEES-GGGS
T ss_pred ceEEecccccchhHHHHHHHhcCEeEEeccCHHHHHHHHHHhcccC-CCcceEEecCHhhccCCCCcEeEEEehHhhccC
Confidence 79999999999999877664 4599999999999999998775521 12367899999997765 699999999999999
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 188 EPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
++++..++|++|.+.|+|+|++++-+-..
T Consensus 136 TD~dlv~fL~RCk~~L~~~G~IvvKEN~~ 164 (218)
T PF05891_consen 136 TDEDLVAFLKRCKQALKPNGVIVVKENVS 164 (218)
T ss_dssp -HHHHHHHHHHHHHHEEEEEEEEEEEEEE
T ss_pred CHHHHHHHHHHHHHhCcCCcEEEEEecCC
Confidence 99999999999999999999999866543
No 104
>PHA03411 putative methyltransferase; Provisional
Probab=99.44 E-value=1.5e-12 Score=104.26 Aligned_cols=112 Identities=18% Similarity=0.219 Sum_probs=86.8
Q ss_pred CcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC
Q 026903 94 PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP 171 (231)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~ 171 (231)
|...+..++.. .....+|||+|||+|.++..++.. +.+|+++|+++.+++.++++. ++++++++|+.+...
T Consensus 51 P~~i~~~f~~~-~~~~grVLDLGcGsGilsl~la~r~~~~~V~gVDisp~al~~Ar~n~------~~v~~v~~D~~e~~~ 123 (279)
T PHA03411 51 PEGLAWDFTID-AHCTGKVLDLCAGIGRLSFCMLHRCKPEKIVCVELNPEFARIGKRLL------PEAEWITSDVFEFES 123 (279)
T ss_pred CHHHHHHHHhc-cccCCeEEEcCCCCCHHHHHHHHhCCCCEEEEEECCHHHHHHHHHhC------cCCEEEECchhhhcc
Confidence 45555555432 234579999999999998888763 569999999999999999874 258899999999765
Q ss_pred CCceeEEEeCCcccccChHHH------------------HHHHHHHHhhcCCCcEEEEE
Q 026903 172 TELFDLIFDYTFFCAIEPEMR------------------AAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 172 ~~~fD~i~~~~~~~~~~~~~~------------------~~~l~~~~~~L~pgG~l~~~ 212 (231)
...||+|+++..+.+.+..+. .++++....+|+|+|.++++
T Consensus 124 ~~kFDlIIsNPPF~~l~~~d~~~~~~~~GG~~g~~~l~~~~~l~~v~~~L~p~G~~~~~ 182 (279)
T PHA03411 124 NEKFDVVISNPPFGKINTTDTKDVFEYTGGEFEFKVMTLGQKFADVGYFIVPTGSAGFA 182 (279)
T ss_pred cCCCcEEEEcCCccccCchhhhhhhhhccCccccccccHHHHHhhhHheecCCceEEEE
Confidence 678999999999888654322 45667778899999977665
No 105
>PRK04457 spermidine synthase; Provisional
Probab=99.44 E-value=1.4e-12 Score=105.45 Aligned_cols=109 Identities=17% Similarity=0.160 Sum_probs=84.1
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCc
Q 026903 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~~ 183 (231)
++.+|||+|||+|..+..+++ ++.+++++|+++++++.|++++...+..++++++.+|..+.. ..++||+|++...
T Consensus 66 ~~~~vL~IG~G~G~l~~~l~~~~p~~~v~~VEidp~vi~~A~~~f~~~~~~~rv~v~~~Da~~~l~~~~~~yD~I~~D~~ 145 (262)
T PRK04457 66 RPQHILQIGLGGGSLAKFIYTYLPDTRQTAVEINPQVIAVARNHFELPENGERFEVIEADGAEYIAVHRHSTDVILVDGF 145 (262)
T ss_pred CCCEEEEECCCHhHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHcCCCCCCCceEEEECCHHHHHHhCCCCCCEEEEeCC
Confidence 357999999999999998876 567999999999999999998765544568999999987732 2358999997532
Q ss_pred cc-ccChH-HHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 184 FC-AIEPE-MRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 184 ~~-~~~~~-~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
-. ..+.. ....+++.+.++|+|||++++..+..
T Consensus 146 ~~~~~~~~l~t~efl~~~~~~L~pgGvlvin~~~~ 180 (262)
T PRK04457 146 DGEGIIDALCTQPFFDDCRNALSSDGIFVVNLWSR 180 (262)
T ss_pred CCCCCccccCcHHHHHHHHHhcCCCcEEEEEcCCC
Confidence 11 12111 22689999999999999998865543
No 106
>PF01739 CheR: CheR methyltransferase, SAM binding domain; InterPro: IPR022642 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Flagellated bacteria swim towards favourable chemicals and away from deleterious ones. Sensing of chemoeffector gradients involves chemotaxis receptors, transmembrane (TM) proteins that detect stimuli through their periplasmic domains and transduce the signals via their cytoplasmic domains []. Signalling outputs from these receptors are influenced both by the binding of the chemoeffector ligand to their periplasmic domains and by methylation of specific glutamate residues on their cytoplasmic domains. Methylation is catalysed by CheR, an S-adenosylmethionine-dependent methyltransferase [], which reversibly methylates specific glutamate residues within a coiled coil region, to form gamma-glutamyl methyl ester residues [, ]. The structure of the Salmonella typhimurium chemotaxis receptor methyltransferase CheR, bound to S-adenosylhomocysteine, has been determined to a resolution of 2.0 A []. The structure reveals CheR to be a two-domain protein, with a smaller N-terminal helical domain linked via a single polypeptide connection to a larger C-terminal alpha/beta domain. The C-terminal domain has the characteristics of a nucleotide-binding fold, with an insertion of a small anti-parallel beta-sheet subdomain. The S-adenosylhomocysteine-binding site is formed mainly by the large domain, with contributions from residues within the N-terminal domain and the linker region []. CheR proteins are part of the chemotaxis signaling mechanism which methylates the chemotaxis receptor at specific glutamate residues. This entry refers to the C-terminal SAM-binding domain of the CherR-type MCP methyltransferases, which are found in bacteria, archaea and green plants. This entry is found in association with PF03705 from PFAM. ; PDB: 1AF7_A 1BC5_A.
Probab=99.44 E-value=2.9e-13 Score=104.40 Aligned_cols=104 Identities=26% Similarity=0.339 Sum_probs=73.8
Q ss_pred CCCcEEEecCCCchHHHHhc----C-----C--CCeEEEEeCChHHHHHHHHHhccCC----------------------
Q 026903 108 PKGRALVPGCGTGYDVVAMA----S-----P--ERYVVGLEISDIAIKKAEELSSSLP---------------------- 154 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~----~-----~--~~~v~~iD~s~~~i~~a~~~~~~~~---------------------- 154 (231)
+..+|+.+||++|.-...|| + . ..+++|+|+|+.+++.|++-.....
T Consensus 31 ~~lrIWSagCStGeE~YSlAmll~e~~~~~~~~~~~I~atDi~~~~L~~Ar~G~Y~~~~~~~~~~~~~~ryf~~~~~~~~ 110 (196)
T PF01739_consen 31 RPLRIWSAGCSTGEEPYSLAMLLLELLPGALGWDFRILATDISPSALEKARAGIYPERSLRGLPPAYLRRYFTERDGGGY 110 (196)
T ss_dssp S-EEEEETT-TTTHHHHHHHHHHHHHH-S-TT-SEEEEEEES-HHHHHHHHHTEEEGGGGTTS-HHHHHHHEEEE-CCCT
T ss_pred CCeEEEECCCCCChhHHHHHHHHHHHhcccCCCceEEEEEECCHHHHHHHHhCCCCHHHHhhhHHHHHHHhccccCCCce
Confidence 34699999999997665554 2 1 2489999999999999976322210
Q ss_pred -----CCCceEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 155 -----NAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 155 -----~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
+..+|.|.+.|+.+ ..+.+.||+|+|.+++.+++++.+.++++.+.+.|+|||+|++
T Consensus 111 ~v~~~lr~~V~F~~~NL~~~~~~~~~fD~I~CRNVlIYF~~~~~~~vl~~l~~~L~pgG~L~l 173 (196)
T PF01739_consen 111 RVKPELRKMVRFRRHNLLDPDPPFGRFDLIFCRNVLIYFDPETQQRVLRRLHRSLKPGGYLFL 173 (196)
T ss_dssp TE-HHHHTTEEEEE--TT-S------EEEEEE-SSGGGS-HHHHHHHHHHHGGGEEEEEEEEE
T ss_pred eEChHHcCceEEEecccCCCCcccCCccEEEecCEEEEeCHHHHHHHHHHHHHHcCCCCEEEE
Confidence 12379999999999 5566799999999999999999999999999999999999866
No 107
>PLN02781 Probable caffeoyl-CoA O-methyltransferase
Probab=99.43 E-value=1.3e-12 Score=104.05 Aligned_cols=102 Identities=17% Similarity=0.215 Sum_probs=83.7
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCcee
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~fD 176 (231)
.++++|||+|||+|+-+..++. .+.+++++|+++++++.|++++...++.++++++.+|+.+.. +.++||
T Consensus 67 ~~~~~vLEiGt~~G~s~l~la~~~~~~g~v~tiD~d~~~~~~A~~n~~~~gl~~~i~~~~gda~~~L~~l~~~~~~~~fD 146 (234)
T PLN02781 67 MNAKNTLEIGVFTGYSLLTTALALPEDGRITAIDIDKEAYEVGLEFIKKAGVDHKINFIQSDALSALDQLLNNDPKPEFD 146 (234)
T ss_pred hCCCEEEEecCcccHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEccHHHHHHHHHhCCCCCCCC
Confidence 3468999999999998887765 345999999999999999999999888888999999998832 135899
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
+|++... .+....++..+.++|+|||++++..
T Consensus 147 ~VfiDa~-----k~~y~~~~~~~~~ll~~GG~ii~dn 178 (234)
T PLN02781 147 FAFVDAD-----KPNYVHFHEQLLKLVKVGGIIAFDN 178 (234)
T ss_pred EEEECCC-----HHHHHHHHHHHHHhcCCCeEEEEEc
Confidence 9995322 2455678899999999999887744
No 108
>PF07021 MetW: Methionine biosynthesis protein MetW; InterPro: IPR010743 This family consists of several bacterial and one archaeal methionine biosynthesis MetW proteins. Biosynthesis of methionine from homoserine in Pseudomonas putida takes place in three steps. The first step is the acylation of homoserine to yield an acyl-L-homoserine. This reaction is catalysed by the products of the metXW genes and is equivalent to the first step in enterobacteria, Gram-positive bacteria and fungi, except that in these microorganisms the reaction is catalysed by a single polypeptide (the product of the metA gene in Escherichia coli and the met5 gene product in Neurospora crassa). In P. putida, as in Gram-positive bacteria and certain fungi, the second and third steps are a direct sulphydrylation that converts the O-acyl-L-homoserine into homocysteine and further methylation to yield methionine. The latter reaction can be mediated by either of the two methionine synthetases present in the cells [].
Probab=99.43 E-value=7.5e-13 Score=100.11 Aligned_cols=98 Identities=19% Similarity=0.231 Sum_probs=79.0
Q ss_pred CCCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeC
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDY 181 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~ 181 (231)
..|+.+|||+|||.|.+...|.+ ++...+|+|++++.+..+.++. +.++++|+.+ .+++++||.|+.+
T Consensus 11 I~pgsrVLDLGCGdG~LL~~L~~~k~v~g~GvEid~~~v~~cv~rG--------v~Viq~Dld~gL~~f~d~sFD~VIls 82 (193)
T PF07021_consen 11 IEPGSRVLDLGCGDGELLAYLKDEKQVDGYGVEIDPDNVAACVARG--------VSVIQGDLDEGLADFPDQSFDYVILS 82 (193)
T ss_pred cCCCCEEEecCCCchHHHHHHHHhcCCeEEEEecCHHHHHHHHHcC--------CCEEECCHHHhHhhCCCCCccEEehH
Confidence 34568999999999999999987 7789999999999999988753 7799999998 5678899999999
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
.++.++. ...++|+++.++ |... ++.|+.-
T Consensus 83 qtLQ~~~--~P~~vL~EmlRV---gr~~-IVsFPNF 112 (193)
T PF07021_consen 83 QTLQAVR--RPDEVLEEMLRV---GRRA-IVSFPNF 112 (193)
T ss_pred hHHHhHh--HHHHHHHHHHHh---cCeE-EEEecCh
Confidence 9999984 345677777665 4444 3455443
No 109
>PF03291 Pox_MCEL: mRNA capping enzyme; InterPro: IPR004971 This is a family of viral mRNA capping enzymes. The enzyme catalyses the first two reactions in the mRNA cap formation pathway. It is a heterodimer consisting of a large and small subunit. This entry is the large subunit. ; GO: 0006370 mRNA capping; PDB: 3EPP_A 3BGV_C 2VDW_C 1RI5_A 1RI3_A 1RI1_A 1Z3C_A 1RI2_A 2HV9_A 1RI4_A.
Probab=99.42 E-value=1.5e-12 Score=108.19 Aligned_cols=109 Identities=24% Similarity=0.317 Sum_probs=81.6
Q ss_pred CCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhcc---------CCCCCceEEEEccCCC-----CCCC
Q 026903 108 PKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSS---------LPNAKFVSFLKADFFT-----WCPT 172 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~---------~~~~~~i~~~~~d~~~-----~~~~ 172 (231)
++.+|||+|||.|..+......+ ..++|+|+++..|+.|+++... ....-...|+.+|.+. ..+.
T Consensus 62 ~~~~VLDl~CGkGGDL~Kw~~~~i~~~vg~Dis~~si~ea~~Ry~~~~~~~~~~~~~~~f~a~f~~~D~f~~~l~~~~~~ 141 (331)
T PF03291_consen 62 PGLTVLDLCCGKGGDLQKWQKAKIKHYVGIDISEESIEEARERYKQLKKRNNSKQYRFDFIAEFIAADCFSESLREKLPP 141 (331)
T ss_dssp TT-EEEEET-TTTTTHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHHTSTT-HTSEECCEEEEEESTTCCSHHHCTSSS
T ss_pred CCCeEEEecCCCchhHHHHHhcCCCEEEEEeCCHHHHHHHHHHHHHhccccccccccccchhheeccccccchhhhhccc
Confidence 56899999999999988887755 4999999999999999998821 1111246788888876 2233
Q ss_pred --CceeEEEeCCccccc--ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 173 --ELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 173 --~~fD~i~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
..||+|-|.+++|+. +.+....+|+.+...|+|||+++..+.+.
T Consensus 142 ~~~~FDvVScQFalHY~Fese~~ar~~l~Nvs~~Lk~GG~FIgT~~d~ 189 (331)
T PF03291_consen 142 RSRKFDVVSCQFALHYAFESEEKARQFLKNVSSLLKPGGYFIGTTPDS 189 (331)
T ss_dssp TTS-EEEEEEES-GGGGGSSHHHHHHHHHHHHHTEEEEEEEEEEEE-H
T ss_pred cCCCcceeehHHHHHHhcCCHHHHHHHHHHHHHhcCCCCEEEEEecCH
Confidence 489999999999985 44566779999999999999999877544
No 110
>COG2242 CobL Precorrin-6B methylase 2 [Coenzyme metabolism]
Probab=99.42 E-value=5e-12 Score=95.05 Aligned_cols=101 Identities=23% Similarity=0.206 Sum_probs=87.0
Q ss_pred CCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC-ceeEEEeCC
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYT 182 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~fD~i~~~~ 182 (231)
..++.+++|||||+|..+..++. +..+|+++|.++++++..++|..+.+ .+++.++.++..+..+.. +||.||...
T Consensus 32 ~~~g~~l~DIGaGtGsi~iE~a~~~p~~~v~AIe~~~~a~~~~~~N~~~fg-~~n~~vv~g~Ap~~L~~~~~~daiFIGG 110 (187)
T COG2242 32 PRPGDRLWDIGAGTGSITIEWALAGPSGRVIAIERDEEALELIERNAARFG-VDNLEVVEGDAPEALPDLPSPDAIFIGG 110 (187)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhC-CCcEEEEeccchHhhcCCCCCCEEEECC
Confidence 45668999999999999999994 66799999999999999999999988 578999999999965444 699999877
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
. -.+ +.+++.+...|+|||+|++..
T Consensus 111 g-~~i-----~~ile~~~~~l~~ggrlV~na 135 (187)
T COG2242 111 G-GNI-----EEILEAAWERLKPGGRLVANA 135 (187)
T ss_pred C-CCH-----HHHHHHHHHHcCcCCeEEEEe
Confidence 6 333 578999999999999998754
No 111
>PF01135 PCMT: Protein-L-isoaspartate(D-aspartate) O-methyltransferase (PCMT); InterPro: IPR000682 Protein-L-isoaspartate(D-aspartate) O-methyltransferase (2.1.1.77 from EC) (PCMT) [] (which is also known as L-isoaspartyl protein carboxyl methyltransferase) is an enzyme that catalyses the transfer of a methyl group from S-adenosylmethionine to the free carboxyl groups of D-aspartyl or L-isoaspartyl residues in a variety of peptides and proteins. The enzyme does not act on normal L-aspartyl residues L-isoaspartyl and D-aspartyl are the products of the spontaneous deamidation and/or isomerisation of normal L-aspartyl and L-asparaginyl residues in proteins. PCMT plays a role in the repair and/or degradation of these damaged proteins; the enzymatic methyl esterification of the abnormal residues can lead to their conversion to normal L-aspartyl residues. The SAM domain is present in most of these proteins.; GO: 0004719 protein-L-isoaspartate (D-aspartate) O-methyltransferase activity, 0006464 protein modification process; PDB: 3LBF_A 1DL5_B 1JG3_B 1JG2_A 1JG1_A 1JG4_A 2YXE_A 2PBF_B 1VBF_C 1R18_A ....
Probab=99.42 E-value=7.7e-13 Score=103.14 Aligned_cols=108 Identities=23% Similarity=0.246 Sum_probs=80.8
Q ss_pred HHHHHHcCC-CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-CCC
Q 026903 98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW-CPT 172 (231)
Q Consensus 98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~-~~~ 172 (231)
...+++... .++.+|||||||+|+.+..|+. +...|+++|.++..++.|++++...+. .++.++.+|.... ...
T Consensus 61 ~a~~l~~L~l~pg~~VLeIGtGsGY~aAlla~lvg~~g~Vv~vE~~~~l~~~A~~~l~~~~~-~nv~~~~gdg~~g~~~~ 139 (209)
T PF01135_consen 61 VARMLEALDLKPGDRVLEIGTGSGYQAALLAHLVGPVGRVVSVERDPELAERARRNLARLGI-DNVEVVVGDGSEGWPEE 139 (209)
T ss_dssp HHHHHHHTTC-TT-EEEEES-TTSHHHHHHHHHHSTTEEEEEEESBHHHHHHHHHHHHHHTT-HSEEEEES-GGGTTGGG
T ss_pred HHHHHHHHhcCCCCEEEEecCCCcHHHHHHHHhcCccceEEEECccHHHHHHHHHHHHHhcc-CceeEEEcchhhccccC
Confidence 455555553 4568999999999999999987 334799999999999999999887643 3799999998873 344
Q ss_pred CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.+||.|++......+| ..+.+.|++||+|++.--
T Consensus 140 apfD~I~v~~a~~~ip--------~~l~~qL~~gGrLV~pi~ 173 (209)
T PF01135_consen 140 APFDRIIVTAAVPEIP--------EALLEQLKPGGRLVAPIG 173 (209)
T ss_dssp -SEEEEEESSBBSS----------HHHHHTEEEEEEEEEEES
T ss_pred CCcCEEEEeeccchHH--------HHHHHhcCCCcEEEEEEc
Confidence 6899999988877664 347788999999987543
No 112
>PRK07402 precorrin-6B methylase; Provisional
Probab=99.41 E-value=2.5e-12 Score=99.86 Aligned_cols=102 Identities=18% Similarity=0.156 Sum_probs=79.0
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCc
Q 026903 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~~ 183 (231)
++.+|||+|||+|.++..+++ ++.+|+++|+++++++.+++++...+. .+++++.+|+.+.. ....+|.++...
T Consensus 40 ~~~~VLDiG~G~G~~~~~la~~~~~~~V~~vD~s~~~~~~a~~n~~~~~~-~~v~~~~~d~~~~~~~~~~~~d~v~~~~- 117 (196)
T PRK07402 40 PDSVLWDIGAGTGTIPVEAGLLCPKGRVIAIERDEEVVNLIRRNCDRFGV-KNVEVIEGSAPECLAQLAPAPDRVCIEG- 117 (196)
T ss_pred CCCEEEEeCCCCCHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCC-CCeEEEECchHHHHhhCCCCCCEEEEEC-
Confidence 458999999999999998875 457999999999999999999877654 36999999986621 122456665421
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
......+++.+.+.|+|||.+++.....
T Consensus 118 -----~~~~~~~l~~~~~~LkpgG~li~~~~~~ 145 (196)
T PRK07402 118 -----GRPIKEILQAVWQYLKPGGRLVATASSL 145 (196)
T ss_pred -----CcCHHHHHHHHHHhcCCCeEEEEEeecH
Confidence 1234678999999999999998877544
No 113
>COG2890 HemK Methylase of polypeptide chain release factors [Translation, ribosomal structure and biogenesis]
Probab=99.40 E-value=5.1e-12 Score=103.00 Aligned_cols=156 Identities=24% Similarity=0.249 Sum_probs=105.4
Q ss_pred cccCCCChhHHHHHHHHhccccccc-------hhhhhccC--CCCCCCCCCcHHHHHHHHc---CCCCCC-cEEEecCCC
Q 026903 53 NDNVIKSHPRVNKLQQLMHIESSGG-------WEKCWEEG--LTPWDIGQPAPIIVHLHQS---GALPKG-RALVPGCGT 119 (231)
Q Consensus 53 ~~~~~~~~~~~~~~~~~~~~~~~~~-------w~~~~~~~--~~~~~~~~~~~~~~~~~~~---~~~~~~-~vLDiGcG~ 119 (231)
.....++..+.+++.++..++.... ...+|... ..+ ..-.|++....+++. ...... +|||+|||+
T Consensus 43 ~~~~~~~~~~~~~~~~~~~rr~~~~P~~yi~g~~~f~gl~~~v~~-~vliPr~dTe~Lve~~l~~~~~~~~~ilDlGTGS 121 (280)
T COG2890 43 HPEAELSEEELERLRELLERRAEGEPVAYILGSAEFGGLRFKVDE-GVLIPRPDTELLVEAALALLLQLDKRILDLGTGS 121 (280)
T ss_pred ccccccCHHHHHHHHHHHHHHHCCCCHhHhhccCeecceeeeeCC-CceecCCchHHHHHHHHHhhhhcCCcEEEecCCh
Confidence 4455667777777777775542211 11222221 111 223345444444443 111122 799999999
Q ss_pred chHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc-----cCh---
Q 026903 120 GYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA-----IEP--- 189 (231)
Q Consensus 120 G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~-----~~~--- 189 (231)
|..+..++..+ .+|+++|+|+.+++.|++|+..+++ .++.++.+|+++.... +||+|+++..+.- ..+
T Consensus 122 G~iai~la~~~~~~~V~a~Dis~~Al~~A~~Na~~~~l-~~~~~~~~dlf~~~~~-~fDlIVsNPPYip~~~~~~~~~~~ 199 (280)
T COG2890 122 GAIAIALAKEGPDAEVIAVDISPDALALARENAERNGL-VRVLVVQSDLFEPLRG-KFDLIVSNPPYIPAEDPELLPEVV 199 (280)
T ss_pred HHHHHHHHhhCcCCeEEEEECCHHHHHHHHHHHHHcCC-ccEEEEeeecccccCC-ceeEEEeCCCCCCCcccccChhhh
Confidence 99999999854 4999999999999999999999887 6677888899987655 8999999854321 111
Q ss_pred ---------------HHHHHHHHHHHhhcCCCcEEEE
Q 026903 190 ---------------EMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 190 ---------------~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
+....++..+.+.|+|||.+++
T Consensus 200 ~~EP~~Al~~g~dGl~~~~~i~~~a~~~l~~~g~l~l 236 (280)
T COG2890 200 RYEPLLALVGGGDGLEVYRRILGEAPDILKPGGVLIL 236 (280)
T ss_pred ccCHHHHHccCccHHHHHHHHHHhhHHHcCCCcEEEE
Confidence 1336888899999999997765
No 114
>KOG1541 consensus Predicted protein carboxyl methylase [General function prediction only]
Probab=99.40 E-value=3.4e-12 Score=97.57 Aligned_cols=104 Identities=16% Similarity=0.230 Sum_probs=85.9
Q ss_pred CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC--CCCCCceeEEEeCCcccc
Q 026903 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--WCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--~~~~~~fD~i~~~~~~~~ 186 (231)
+.-|||||||+|.-+..+...|+..+|+|+|+.|++.|.+...+ -.++.+|+-+ ++++++||.+++..++.+
T Consensus 51 ~~~iLDIGCGsGLSg~vL~~~Gh~wiGvDiSpsML~~a~~~e~e------gdlil~DMG~GlpfrpGtFDg~ISISAvQW 124 (270)
T KOG1541|consen 51 SGLILDIGCGSGLSGSVLSDSGHQWIGVDISPSMLEQAVERELE------GDLILCDMGEGLPFRPGTFDGVISISAVQW 124 (270)
T ss_pred CcEEEEeccCCCcchheeccCCceEEeecCCHHHHHHHHHhhhh------cCeeeeecCCCCCCCCCccceEEEeeeeee
Confidence 47999999999999999999999999999999999999974322 2578888888 778899999998765554
Q ss_pred c---------ChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 187 I---------EPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 187 ~---------~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
+ |..-+..|+..+..+|++|++.++..|+.+.
T Consensus 125 LcnA~~s~~~P~~Rl~~FF~tLy~~l~rg~raV~QfYpen~ 165 (270)
T KOG1541|consen 125 LCNADKSLHVPKKRLLRFFGTLYSCLKRGARAVLQFYPENE 165 (270)
T ss_pred ecccCccccChHHHHHHHhhhhhhhhccCceeEEEecccch
Confidence 3 3344567888899999999999988887764
No 115
>TIGR03704 PrmC_rel_meth putative protein-(glutamine-N5) methyltransferase, unknown substrate-specific. This protein family is closely related to two different families of protein-(glutamine-N5) methyltransferase. The first is PrmB, which modifies ribosomal protein L3 in some bacteria. The second is PrmC (HemK), which modifies peptide chain release factors 1 and 2 in most bacteria and also in eukaryotes. The glutamine side chain-binding motif NPPY shared by PrmB and PrmC is N[VAT]PY in this family. The protein substrate is unknown.
Probab=99.39 E-value=5.2e-12 Score=101.65 Aligned_cols=100 Identities=19% Similarity=0.236 Sum_probs=78.9
Q ss_pred CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC---CCceeEEEeCCcc
Q 026903 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFF 184 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~fD~i~~~~~~ 184 (231)
.+|||+|||+|.++..+++ ++.+|+++|+|+.+++.|+++...++ ++++++|+.+..+ .+.||+|+++..+
T Consensus 88 ~~vLDlg~GsG~i~l~la~~~~~~~v~~vDis~~al~~A~~N~~~~~----~~~~~~D~~~~l~~~~~~~fDlVv~NPPy 163 (251)
T TIGR03704 88 LVVVDLCCGSGAVGAALAAALDGIELHAADIDPAAVRCARRNLADAG----GTVHEGDLYDALPTALRGRVDILAANAPY 163 (251)
T ss_pred CEEEEecCchHHHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcC----CEEEEeechhhcchhcCCCEeEEEECCCC
Confidence 5899999999999999886 45699999999999999999987653 5789999887432 3579999998654
Q ss_pred c------ccChH------------------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903 185 C------AIEPE------------------MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~------~~~~~------------------~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
. .++++ ....+++.+.+.|+|||++++..
T Consensus 164 ~~~~~~~~~~~e~~~~ep~~al~gg~dgl~~~~~i~~~a~~~L~~gG~l~l~~ 216 (251)
T TIGR03704 164 VPTDAIALMPPEARDHEPRVALDGGADGLDVLRRVAAGAPDWLAPGGHLLVET 216 (251)
T ss_pred CCchhhhcCCHHHHhCCCHHHhcCCCcHHHHHHHHHHHHHHhcCCCCEEEEEE
Confidence 2 12221 23578888889999999998754
No 116
>PRK00811 spermidine synthase; Provisional
Probab=99.38 E-value=6.9e-12 Score=102.65 Aligned_cols=106 Identities=17% Similarity=0.207 Sum_probs=82.6
Q ss_pred CCCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHhccCC----CCCceEEEEccCCCCC--CCCceeEE
Q 026903 107 LPKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLP----NAKFVSFLKADFFTWC--PTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~~~~~----~~~~i~~~~~d~~~~~--~~~~fD~i 178 (231)
..+.+||++|||.|..+..+++. + .+|+++|+++++++.|++.+.... ..++++++.+|..... ..++||+|
T Consensus 75 ~~p~~VL~iG~G~G~~~~~~l~~~~~~~V~~VEid~~vv~~a~~~~~~~~~~~~~d~rv~v~~~Da~~~l~~~~~~yDvI 154 (283)
T PRK00811 75 PNPKRVLIIGGGDGGTLREVLKHPSVEKITLVEIDERVVEVCRKYLPEIAGGAYDDPRVELVIGDGIKFVAETENSFDVI 154 (283)
T ss_pred CCCCEEEEEecCchHHHHHHHcCCCCCEEEEEeCCHHHHHHHHHHhHHhccccccCCceEEEECchHHHHhhCCCcccEE
Confidence 34579999999999999999884 4 489999999999999999875421 2468999999988843 35689999
Q ss_pred EeCCcccccChH--HHHHHHHHHHhhcCCCcEEEEE
Q 026903 179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
++...-.+.++. ....+++.+.+.|+|||++++.
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~gGvlv~~ 190 (283)
T PRK00811 155 IVDSTDPVGPAEGLFTKEFYENCKRALKEDGIFVAQ 190 (283)
T ss_pred EECCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 986543332222 2267889999999999998764
No 117
>PTZ00146 fibrillarin; Provisional
Probab=99.38 E-value=7.6e-12 Score=101.30 Aligned_cols=99 Identities=20% Similarity=0.216 Sum_probs=74.5
Q ss_pred CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEE
Q 026903 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~i~ 179 (231)
.++.+|||+|||+|.++..++.. ...|+++|+++++.+...+..... .+|.++..|+..+. +...||+|+
T Consensus 131 kpG~~VLDLGaG~G~~t~~lAdiVG~~G~VyAVD~s~r~~~dLl~~ak~r---~NI~~I~~Da~~p~~y~~~~~~vDvV~ 207 (293)
T PTZ00146 131 KPGSKVLYLGAASGTTVSHVSDLVGPEGVVYAVEFSHRSGRDLTNMAKKR---PNIVPIIEDARYPQKYRMLVPMVDVIF 207 (293)
T ss_pred CCCCEEEEeCCcCCHHHHHHHHHhCCCCEEEEEECcHHHHHHHHHHhhhc---CCCEEEECCccChhhhhcccCCCCEEE
Confidence 35579999999999999999983 248999999998665554443322 36889999987632 235799999
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
+... .+++...++.++.+.|||||.|++.
T Consensus 208 ~Dva----~pdq~~il~~na~r~LKpGG~~vI~ 236 (293)
T PTZ00146 208 ADVA----QPDQARIVALNAQYFLKNGGHFIIS 236 (293)
T ss_pred EeCC----CcchHHHHHHHHHHhccCCCEEEEE
Confidence 8764 2344456677899999999999884
No 118
>PRK15128 23S rRNA m(5)C1962 methyltransferase; Provisional
Probab=99.37 E-value=5.9e-12 Score=107.24 Aligned_cols=107 Identities=21% Similarity=0.095 Sum_probs=84.6
Q ss_pred CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC-----CCCceeEEEe
Q 026903 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~-----~~~~fD~i~~ 180 (231)
++.+|||+|||+|.++..++..+. +|+++|+|+.+++.|++++..+++. ++++++++|+.+.. ..++||+|++
T Consensus 220 ~g~rVLDlfsgtG~~~l~aa~~ga~~V~~VD~s~~al~~a~~N~~~Ngl~~~~v~~i~~D~~~~l~~~~~~~~~fDlVil 299 (396)
T PRK15128 220 ENKRVLNCFSYTGGFAVSALMGGCSQVVSVDTSQEALDIARQNVELNKLDLSKAEFVRDDVFKLLRTYRDRGEKFDVIVM 299 (396)
T ss_pred CCCeEEEeccCCCHHHHHHHhCCCCEEEEEECCHHHHHHHHHHHHHcCCCCCcEEEEEccHHHHHHHHHhcCCCCCEEEE
Confidence 468999999999999988776655 9999999999999999999888765 47999999998843 2458999998
Q ss_pred CCcccccCh-------HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 181 YTFFCAIEP-------EMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 181 ~~~~~~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
......-+. .....++....++|+|||.|+.+.-
T Consensus 300 DPP~f~~~k~~l~~~~~~y~~l~~~a~~lLk~gG~lv~~sc 340 (396)
T PRK15128 300 DPPKFVENKSQLMGACRGYKDINMLAIQLLNPGGILLTFSC 340 (396)
T ss_pred CCCCCCCChHHHHHHHHHHHHHHHHHHHHcCCCeEEEEEeC
Confidence 755432221 1345666778899999999887553
No 119
>TIGR02081 metW methionine biosynthesis protein MetW. This protein is found alongside MetX, of the enzyme that acylates homoserine as a first step toward methionine biosynthesis, in many species. It appears to act in methionine biosynthesis but is not fully characterized.
Probab=99.36 E-value=3.8e-12 Score=98.71 Aligned_cols=88 Identities=18% Similarity=0.214 Sum_probs=70.5
Q ss_pred CCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCc
Q 026903 108 PKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~~ 183 (231)
++.+|||+|||+|.++..+++ .+..++|+|+++++++.++++ +++++.+|+.+ ..++++||+|+++.+
T Consensus 13 ~~~~iLDiGcG~G~~~~~l~~~~~~~~~giD~s~~~i~~a~~~--------~~~~~~~d~~~~l~~~~~~sfD~Vi~~~~ 84 (194)
T TIGR02081 13 PGSRVLDLGCGDGELLALLRDEKQVRGYGIEIDQDGVLACVAR--------GVNVIQGDLDEGLEAFPDKSFDYVILSQT 84 (194)
T ss_pred CCCEEEEeCCCCCHHHHHHHhccCCcEEEEeCCHHHHHHHHHc--------CCeEEEEEhhhcccccCCCCcCEEEEhhH
Confidence 457999999999999998876 455889999999999988652 36788888876 244568999999999
Q ss_pred ccccChHHHHHHHHHHHhhcCC
Q 026903 184 FCAIEPEMRAAWAQKIKDFLKP 205 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~p 205 (231)
++|+++ ...+++++.+.+++
T Consensus 85 l~~~~d--~~~~l~e~~r~~~~ 104 (194)
T TIGR02081 85 LQATRN--PEEILDEMLRVGRH 104 (194)
T ss_pred hHcCcC--HHHHHHHHHHhCCe
Confidence 999954 45678888776554
No 120
>PLN02476 O-methyltransferase
Probab=99.35 E-value=2.5e-11 Score=98.10 Aligned_cols=103 Identities=16% Similarity=0.147 Sum_probs=85.7
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-------CCcee
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------TELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------~~~fD 176 (231)
.++++|||+|+++|+.++.++. .+.+++++|.+++..+.|++++...++.++++++.+|..+..+ .++||
T Consensus 117 ~~ak~VLEIGT~tGySal~lA~al~~~G~V~TiE~d~e~~~~Ar~n~~~aGl~~~I~li~GdA~e~L~~l~~~~~~~~FD 196 (278)
T PLN02476 117 LGAERCIEVGVYTGYSSLAVALVLPESGCLVACERDSNSLEVAKRYYELAGVSHKVNVKHGLAAESLKSMIQNGEGSSYD 196 (278)
T ss_pred cCCCeEEEecCCCCHHHHHHHHhCCCCCEEEEEECCHHHHHHHHHHHHHcCCCCcEEEEEcCHHHHHHHHHhcccCCCCC
Confidence 3468999999999999999987 3558999999999999999999999888899999999888321 35899
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
+||.-. +......+++.+.++|+|||++++-.-
T Consensus 197 ~VFIDa-----~K~~Y~~y~e~~l~lL~~GGvIV~DNv 229 (278)
T PLN02476 197 FAFVDA-----DKRMYQDYFELLLQLVRVGGVIVMDNV 229 (278)
T ss_pred EEEECC-----CHHHHHHHHHHHHHhcCCCcEEEEecC
Confidence 999432 235667889999999999999877543
No 121
>PRK10611 chemotaxis methyltransferase CheR; Provisional
Probab=99.35 E-value=3.9e-12 Score=103.46 Aligned_cols=108 Identities=19% Similarity=0.223 Sum_probs=85.0
Q ss_pred CCcEEEecCCCchHHHHhcC----C------CCeEEEEeCChHHHHHHHHHhccC-----------------------C-
Q 026903 109 KGRALVPGCGTGYDVVAMAS----P------ERYVVGLEISDIAIKKAEELSSSL-----------------------P- 154 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~----~------~~~v~~iD~s~~~i~~a~~~~~~~-----------------------~- 154 (231)
..+|+..||++|.-...+|- . ..+|+|+|+|+.+++.|++..... +
T Consensus 116 ~irIWSAgCStGEEpYSlAmll~e~~~~~~~~~~I~atDIs~~aL~~Ar~G~Y~~~~~r~~p~~~~~ryF~~~~~~~~~~ 195 (287)
T PRK10611 116 EYRVWSAAASTGEEPYSIAMTLADTLGTAPGRWKVFASDIDTEVLEKARSGIYRQEELKTLSPQQLQRYFMRGTGPHEGL 195 (287)
T ss_pred CEEEEEccccCCHHHHHHHHHHHHhhcccCCCcEEEEEECCHHHHHHHHhCCCCHHHHhcCCHHHHHHHcccccCCCCce
Confidence 36999999999976655542 1 248999999999999998752110 0
Q ss_pred ------CCCceEEEEccCCCC-C-CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 155 ------NAKFVSFLKADFFTW-C-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 155 ------~~~~i~~~~~d~~~~-~-~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
+...|+|.+.|+.+. . +.+.||+|+|.+++.|++++.+.++++.+.+.|+|||+|++ ..+..
T Consensus 196 ~~v~~~lr~~V~F~~~NL~~~~~~~~~~fD~I~cRNvliyF~~~~~~~vl~~l~~~L~pgG~L~l-G~sEs 265 (287)
T PRK10611 196 VRVRQELANYVDFQQLNLLAKQWAVPGPFDAIFCRNVMIYFDKTTQERILRRFVPLLKPDGLLFA-GHSEN 265 (287)
T ss_pred EEEChHHHccCEEEcccCCCCCCccCCCcceeeHhhHHhcCCHHHHHHHHHHHHHHhCCCcEEEE-eCccc
Confidence 224789999999983 2 35789999999999999999999999999999999998754 44443
No 122
>KOG3010 consensus Methyltransferase [General function prediction only]
Probab=99.34 E-value=4e-12 Score=98.51 Aligned_cols=117 Identities=14% Similarity=0.096 Sum_probs=86.2
Q ss_pred cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCC
Q 026903 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~ 173 (231)
...+..+....... ..++|+|||+|..++.+++.-.+|+++|+|+++++.|++............+...+..++. .++
T Consensus 21 tdw~~~ia~~~~~h-~~a~DvG~G~Gqa~~~iae~~k~VIatD~s~~mL~~a~k~~~~~y~~t~~~ms~~~~v~L~g~e~ 99 (261)
T KOG3010|consen 21 TDWFKKIASRTEGH-RLAWDVGTGNGQAARGIAEHYKEVIATDVSEAMLKVAKKHPPVTYCHTPSTMSSDEMVDLLGGEE 99 (261)
T ss_pred HHHHHHHHhhCCCc-ceEEEeccCCCcchHHHHHhhhhheeecCCHHHHHHhhcCCCcccccCCccccccccccccCCCc
Confidence 44555555533222 4999999999988888888766999999999999999886543322223445555555533 367
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCc-EEEEEEcc
Q 026903 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG-ELITLMFP 215 (231)
Q Consensus 174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG-~l~~~~~~ 215 (231)
+.|+|+|..++|++ +.+.+.+.+.++|+++| .+.+-.|.
T Consensus 100 SVDlI~~Aqa~HWF---dle~fy~~~~rvLRk~Gg~iavW~Y~ 139 (261)
T KOG3010|consen 100 SVDLITAAQAVHWF---DLERFYKEAYRVLRKDGGLIAVWNYN 139 (261)
T ss_pred ceeeehhhhhHHhh---chHHHHHHHHHHcCCCCCEEEEEEcc
Confidence 99999999999998 44678999999998887 66666665
No 123
>PRK13943 protein-L-isoaspartate O-methyltransferase; Provisional
Probab=99.34 E-value=1.5e-11 Score=101.90 Aligned_cols=106 Identities=23% Similarity=0.174 Sum_probs=80.4
Q ss_pred HHHHHcCC-CCCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCC
Q 026903 99 VHLHQSGA-LPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTE 173 (231)
Q Consensus 99 ~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~ 173 (231)
..+++... .++.+|||+|||+|.++..+++.. ..|+++|+++++++.|++++...+. +++.++.+|..+.. ...
T Consensus 70 a~ll~~L~i~~g~~VLDIG~GtG~~a~~LA~~~~~~g~VvgVDis~~~l~~Ar~~l~~~g~-~nV~~i~gD~~~~~~~~~ 148 (322)
T PRK13943 70 ALFMEWVGLDKGMRVLEIGGGTGYNAAVMSRVVGEKGLVVSVEYSRKICEIAKRNVRRLGI-ENVIFVCGDGYYGVPEFA 148 (322)
T ss_pred HHHHHhcCCCCCCEEEEEeCCccHHHHHHHHhcCCCCEEEEEECCHHHHHHHHHHHHHcCC-CcEEEEeCChhhcccccC
Confidence 34444433 345899999999999999998732 3699999999999999998877654 46899999987733 335
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
+||+|++.....+++ ..+.+.|+|||++++..
T Consensus 149 ~fD~Ii~~~g~~~ip--------~~~~~~LkpgG~Lvv~~ 180 (322)
T PRK13943 149 PYDVIFVTVGVDEVP--------ETWFTQLKEGGRVIVPI 180 (322)
T ss_pred CccEEEECCchHHhH--------HHHHHhcCCCCEEEEEe
Confidence 799999876655442 34667899999987743
No 124
>COG4122 Predicted O-methyltransferase [General function prediction only]
Probab=99.33 E-value=2.4e-11 Score=94.62 Aligned_cols=107 Identities=19% Similarity=0.230 Sum_probs=88.4
Q ss_pred CCCCcEEEecCCCchHHHHhcC--C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE-ccCCCCCC---CCceeEEE
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADFFTWCP---TELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~-~d~~~~~~---~~~fD~i~ 179 (231)
..+++|||||.+.|+-++.|+. + ..+++.+|++++.++.|++++.+.++.++|..+. +|..+... .++||+||
T Consensus 58 ~~~k~iLEiGT~~GySal~mA~~l~~~g~l~tiE~~~e~~~~A~~n~~~ag~~~~i~~~~~gdal~~l~~~~~~~fDliF 137 (219)
T COG4122 58 SGPKRILEIGTAIGYSALWMALALPDDGRLTTIERDEERAEIARENLAEAGVDDRIELLLGGDALDVLSRLLDGSFDLVF 137 (219)
T ss_pred cCCceEEEeecccCHHHHHHHhhCCCCCeEEEEeCCHHHHHHHHHHHHHcCCcceEEEEecCcHHHHHHhccCCCccEEE
Confidence 3568999999999999999987 3 4589999999999999999999999988899988 58777333 47999999
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
.-. .....+.++..+.++|+|||++++-..-..+
T Consensus 138 IDa-----dK~~yp~~le~~~~lLr~GGliv~DNvl~~G 171 (219)
T COG4122 138 IDA-----DKADYPEYLERALPLLRPGGLIVADNVLFGG 171 (219)
T ss_pred EeC-----ChhhCHHHHHHHHHHhCCCcEEEEeecccCC
Confidence 432 2355678999999999999988876554443
No 125
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=99.32 E-value=7.3e-12 Score=114.25 Aligned_cols=107 Identities=21% Similarity=0.155 Sum_probs=86.6
Q ss_pred CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC--CCCceeEEEeCCc
Q 026903 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC--PTELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~--~~~~fD~i~~~~~ 183 (231)
++.+|||+|||+|.+++.++..|. +|+++|+|+.+++.|++++..+++. ++++|+++|+.++. ...+||+|++...
T Consensus 538 ~g~rVLDlf~gtG~~sl~aa~~Ga~~V~~vD~s~~al~~a~~N~~~ng~~~~~v~~i~~D~~~~l~~~~~~fDlIilDPP 617 (702)
T PRK11783 538 KGKDFLNLFAYTGTASVHAALGGAKSTTTVDMSNTYLEWAERNFALNGLSGRQHRLIQADCLAWLKEAREQFDLIFIDPP 617 (702)
T ss_pred CCCeEEEcCCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCCccceEEEEccHHHHHHHcCCCcCEEEECCC
Confidence 468999999999999999999776 6999999999999999999888775 57999999998743 2458999998643
Q ss_pred ccccC---------hHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 184 FCAIE---------PEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 184 ~~~~~---------~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
..--. ......++..+.++|+|||.|++.+-
T Consensus 618 ~f~~~~~~~~~~~~~~~y~~l~~~a~~lL~~gG~l~~~~~ 657 (702)
T PRK11783 618 TFSNSKRMEDSFDVQRDHVALIKDAKRLLRPGGTLYFSNN 657 (702)
T ss_pred CCCCCCccchhhhHHHHHHHHHHHHHHHcCCCCEEEEEeC
Confidence 21100 13456788899999999999987654
No 126
>smart00650 rADc Ribosomal RNA adenine dimethylases.
Probab=99.32 E-value=2.3e-11 Score=92.24 Aligned_cols=109 Identities=13% Similarity=0.081 Sum_probs=77.6
Q ss_pred HHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeE
Q 026903 100 HLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDL 177 (231)
Q Consensus 100 ~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~ 177 (231)
.+++... .++.+|||+|||+|.++..+++.+.+++++|+++.+++.+++++... ++++++++|+.+.. +...||.
T Consensus 4 ~i~~~~~~~~~~~vLEiG~G~G~lt~~l~~~~~~v~~vE~~~~~~~~~~~~~~~~---~~v~ii~~D~~~~~~~~~~~d~ 80 (169)
T smart00650 4 KIVRAANLRPGDTVLEIGPGKGALTEELLERAARVTAIEIDPRLAPRLREKFAAA---DNLTVIHGDALKFDLPKLQPYK 80 (169)
T ss_pred HHHHhcCCCCcCEEEEECCCccHHHHHHHhcCCeEEEEECCHHHHHHHHHHhccC---CCEEEEECchhcCCccccCCCE
Confidence 3444443 34479999999999999999998889999999999999999987542 47999999999953 3446999
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
|+++..++ +..+...++++.. .+.++|.+++ ...
T Consensus 81 vi~n~Py~-~~~~~i~~~l~~~--~~~~~~~l~~-q~e 114 (169)
T smart00650 81 VVGNLPYN-ISTPILFKLLEEP--PAFRDAVLMV-QKE 114 (169)
T ss_pred EEECCCcc-cHHHHHHHHHhcC--CCcceEEEEE-EHH
Confidence 99876554 4333333333321 2346666644 443
No 127
>TIGR00438 rrmJ cell division protein FtsJ.
Probab=99.32 E-value=1.6e-11 Score=94.78 Aligned_cols=107 Identities=17% Similarity=0.259 Sum_probs=76.1
Q ss_pred HHHHHHcC--CCCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---
Q 026903 98 IVHLHQSG--ALPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--- 169 (231)
Q Consensus 98 ~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--- 169 (231)
+.++.+.. ..++.+|||+|||+|.++..+++. ..+++++|+++.+ .. .+++++++|+.+.
T Consensus 20 ~~~~~~~~~~i~~g~~VLDiG~GtG~~~~~l~~~~~~~~~v~~vDis~~~---------~~---~~i~~~~~d~~~~~~~ 87 (188)
T TIGR00438 20 LLQLNQKFKLIKPGDTVLDLGAAPGGWSQVAVEQVGGKGRVIAVDLQPMK---------PI---ENVDFIRGDFTDEEVL 87 (188)
T ss_pred HHHHHHHhcccCCCCEEEEecCCCCHHHHHHHHHhCCCceEEEEeccccc---------cC---CCceEEEeeCCChhHH
Confidence 44444433 345689999999999999888763 3479999999864 11 3578888898763
Q ss_pred ------CCCCceeEEEeCCccc--------ccC-hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 170 ------CPTELFDLIFDYTFFC--------AIE-PEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 170 ------~~~~~fD~i~~~~~~~--------~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
.+.++||+|++....+ |+. .+...++++.+.++|+|||++++..+..
T Consensus 88 ~~l~~~~~~~~~D~V~~~~~~~~~g~~~~~~~~~~~~~~~~l~~~~~~LkpgG~lvi~~~~~ 149 (188)
T TIGR00438 88 NKIRERVGDDKVDVVMSDAAPNISGYWDIDHLRSIDLVELALDIAKEVLKPKGNFVVKVFQG 149 (188)
T ss_pred HHHHHHhCCCCccEEEcCCCCCCCCCccccHHHHHHHHHHHHHHHHHHccCCCEEEEEEccC
Confidence 2456799999864321 111 1234688999999999999999876554
No 128
>PF01596 Methyltransf_3: O-methyltransferase; InterPro: IPR002935 Members of this family are O-methyltransferases. The family includes also bacterial O-methyltransferases that may be involved in antibiotic production [].; GO: 0008171 O-methyltransferase activity; PDB: 1SUI_C 1SUS_D 3CBG_A 2GPY_B 3TR6_A 2AVD_A 3DUL_B 3DUW_B 2ZTH_A 1VID_A ....
Probab=99.32 E-value=9.4e-12 Score=96.77 Aligned_cols=103 Identities=19% Similarity=0.192 Sum_probs=84.0
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCcee
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~fD 176 (231)
..+++||||||++|+-++.+++ .+.+++.+|.+++..+.|++++...++.++|+++.+|..+.. ..++||
T Consensus 44 ~~~k~vLEIGt~~GySal~la~~l~~~g~i~tiE~~~~~~~~A~~~~~~ag~~~~I~~~~gda~~~l~~l~~~~~~~~fD 123 (205)
T PF01596_consen 44 TRPKRVLEIGTFTGYSALWLAEALPEDGKITTIEIDPERAEIARENFRKAGLDDRIEVIEGDALEVLPELANDGEEGQFD 123 (205)
T ss_dssp HT-SEEEEESTTTSHHHHHHHHTSTTTSEEEEEESSHHHHHHHHHHHHHTTGGGGEEEEES-HHHHHHHHHHTTTTTSEE
T ss_pred cCCceEEEeccccccHHHHHHHhhcccceEEEecCcHHHHHHHHHHHHhcCCCCcEEEEEeccHhhHHHHHhccCCCcee
Confidence 3458999999999999999996 467999999999999999999998888889999999998732 135899
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
+||.-.. ......++..+.++|+|||++++-..
T Consensus 124 ~VFiDa~-----K~~y~~y~~~~~~ll~~ggvii~DN~ 156 (205)
T PF01596_consen 124 FVFIDAD-----KRNYLEYFEKALPLLRPGGVIIADNV 156 (205)
T ss_dssp EEEEEST-----GGGHHHHHHHHHHHEEEEEEEEEETT
T ss_pred EEEEccc-----ccchhhHHHHHhhhccCCeEEEEccc
Confidence 9995432 34556788899999999998877543
No 129
>PRK14904 16S rRNA methyltransferase B; Provisional
Probab=99.31 E-value=3.4e-11 Score=104.67 Aligned_cols=110 Identities=20% Similarity=0.260 Sum_probs=86.6
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC-
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT- 182 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~- 182 (231)
.++.+|||+|||+|..+..+++ .+.+|+++|+++.+++.+++++...++. +++++.+|..+..+..+||.|++..
T Consensus 249 ~~g~~VLDlgaG~G~kt~~la~~~~~~~~V~avD~s~~~l~~~~~~~~~~g~~-~v~~~~~Da~~~~~~~~fD~Vl~D~P 327 (445)
T PRK14904 249 QPGSTVLDLCAAPGGKSTFMAELMQNRGQITAVDRYPQKLEKIRSHASALGIT-IIETIEGDARSFSPEEQPDAILLDAP 327 (445)
T ss_pred CCCCEEEEECCCCCHHHHHHHHHhCCCcEEEEEECCHHHHHHHHHHHHHhCCC-eEEEEeCcccccccCCCCCEEEEcCC
Confidence 4568999999999998887775 3459999999999999999999877653 6899999998866667899999531
Q ss_pred -----ccc-------ccChH-------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 183 -----FFC-------AIEPE-------MRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 183 -----~~~-------~~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
++. +.+++ ...++|..+.+.|+|||+|++.+.+..
T Consensus 328 csg~g~~~r~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvystcs~~ 381 (445)
T PRK14904 328 CTGTGVLGRRAELRWKLTPEKLAELVGLQAELLDHAASLLKPGGVLVYATCSIE 381 (445)
T ss_pred CCCcchhhcCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 111 12222 235789999999999999999886654
No 130
>PRK10909 rsmD 16S rRNA m(2)G966-methyltransferase; Provisional
Probab=99.31 E-value=6.7e-11 Score=91.64 Aligned_cols=106 Identities=12% Similarity=0.071 Sum_probs=80.2
Q ss_pred CCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCc
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~~ 183 (231)
.++.+|||+|||+|.+++.++.++ .+|+++|.++.+++.+++++...+. .++.++++|+.+.. ....||+|++...
T Consensus 52 ~~~~~vLDl~~GsG~l~l~~lsr~a~~V~~vE~~~~a~~~a~~Nl~~~~~-~~v~~~~~D~~~~l~~~~~~fDlV~~DPP 130 (199)
T PRK10909 52 IVDARCLDCFAGSGALGLEALSRYAAGATLLEMDRAVAQQLIKNLATLKA-GNARVVNTNALSFLAQPGTPHNVVFVDPP 130 (199)
T ss_pred cCCCEEEEcCCCccHHHHHHHHcCCCEEEEEECCHHHHHHHHHHHHHhCC-CcEEEEEchHHHHHhhcCCCceEEEECCC
Confidence 345799999999999998755544 5999999999999999999887764 36999999998733 2346999998776
Q ss_pred ccccChHHHHHHHHHHHh--hcCCCcEEEEEEccC
Q 026903 184 FCAIEPEMRAAWAQKIKD--FLKPDGELITLMFPI 216 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~--~L~pgG~l~~~~~~~ 216 (231)
+.. .....+++.+.. .|+|++++++.+...
T Consensus 131 y~~---g~~~~~l~~l~~~~~l~~~~iv~ve~~~~ 162 (199)
T PRK10909 131 FRK---GLLEETINLLEDNGWLADEALIYVESEVE 162 (199)
T ss_pred CCC---ChHHHHHHHHHHCCCcCCCcEEEEEecCC
Confidence 432 233445565655 379999888776553
No 131
>PF02390 Methyltransf_4: Putative methyltransferase ; InterPro: IPR003358 This entry represents tRNA (guanine-N-7) methyltransferase (2.1.1.33 from EC), which catalyses the formation of N(7)-methylguanine at position 46 (m7G46) in tRNA. Capping of the pre-mRNA 5' end by addition a monomethylated guanosine cap (m(7)G) is an essential and the earliest modification in the biogenesis of mRNA []. The reaction is catalysed by three enzymes: triphosphatase, guanylyltransferase, and tRNA (guanine-N-7) methyltransferase [, ].; GO: 0008176 tRNA (guanine-N7-)-methyltransferase activity, 0006400 tRNA modification; PDB: 3DXZ_A 3DXY_A 3DXX_A 3CKK_A 3P2I_B 3P2K_D 3P2E_A 3MTE_B 3PB3_B 1YZH_B ....
Probab=99.30 E-value=1.8e-11 Score=94.76 Aligned_cols=103 Identities=25% Similarity=0.294 Sum_probs=79.5
Q ss_pred CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEEeCCc
Q 026903 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDYTF 183 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~~~~~ 183 (231)
..+||||||.|.++..+|. +..+++|+|+....+..+.++....++ .|+.++++|+.. .++++++|-|+.++.
T Consensus 19 ~l~lEIG~G~G~~l~~~A~~~Pd~n~iGiE~~~~~v~~a~~~~~~~~l-~Nv~~~~~da~~~l~~~~~~~~v~~i~i~FP 97 (195)
T PF02390_consen 19 PLILEIGCGKGEFLIELAKRNPDINFIGIEIRKKRVAKALRKAEKRGL-KNVRFLRGDARELLRRLFPPGSVDRIYINFP 97 (195)
T ss_dssp EEEEEET-TTSHHHHHHHHHSTTSEEEEEES-HHHHHHHHHHHHHHTT-SSEEEEES-CTTHHHHHSTTTSEEEEEEES-
T ss_pred CeEEEecCCCCHHHHHHHHHCCCCCEEEEecchHHHHHHHHHHHhhcc-cceEEEEccHHHHHhhcccCCchheEEEeCC
Confidence 4999999999999999998 778999999999999999887766544 579999999988 456689999997655
Q ss_pred ccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903 184 FCAIEPE------MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 184 ~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
-.|.-.. ....++..+.++|+|||.|.+.+
T Consensus 98 DPWpK~rH~krRl~~~~fl~~~~~~L~~gG~l~~~T 133 (195)
T PF02390_consen 98 DPWPKKRHHKRRLVNPEFLELLARVLKPGGELYFAT 133 (195)
T ss_dssp ----SGGGGGGSTTSHHHHHHHHHHEEEEEEEEEEE
T ss_pred CCCcccchhhhhcCCchHHHHHHHHcCCCCEEEEEe
Confidence 4432211 12689999999999999998865
No 132
>COG1352 CheR Methylase of chemotaxis methyl-accepting proteins [Cell motility and secretion / Signal transduction mechanisms]
Probab=99.29 E-value=3.8e-11 Score=96.56 Aligned_cols=107 Identities=21% Similarity=0.225 Sum_probs=85.8
Q ss_pred CCcEEEecCCCchHHHHhc----C-------CCCeEEEEeCChHHHHHHHHHhcc-----CC------------------
Q 026903 109 KGRALVPGCGTGYDVVAMA----S-------PERYVVGLEISDIAIKKAEELSSS-----LP------------------ 154 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~----~-------~~~~v~~iD~s~~~i~~a~~~~~~-----~~------------------ 154 (231)
.-+|+.+||++|.-...+| + ...+|+++|+|..+++.|+.-... .+
T Consensus 97 ~irIWSaaCStGEEpYSiAm~l~e~~~~~~~~~~~I~AtDId~~~L~~A~~G~Y~~~~~~~~~~~~~~~ryF~~~~~~~y 176 (268)
T COG1352 97 PIRIWSAACSTGEEPYSLAMLLLEALGKLAGFRVKILATDIDLSVLEKARAGIYPSRELLRGLPPELLRRYFERGGDGSY 176 (268)
T ss_pred ceEEEecCcCCCccHHHHHHHHHHHhccccCCceEEEEEECCHHHHHHHhcCCCChhHhhccCCHHHHhhhEeecCCCcE
Confidence 5799999999996655544 2 135899999999999999764333 11
Q ss_pred -----CCCceEEEEccCCCCC-CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 155 -----NAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 155 -----~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+...|.|...|+.... ..+.||+|+|.+|+.+++.+.+.+++..++..|+|||+|++ ..+.
T Consensus 177 ~v~~~ir~~V~F~~~NLl~~~~~~~~fD~IfCRNVLIYFd~~~q~~il~~f~~~L~~gG~Lfl-G~sE 243 (268)
T COG1352 177 RVKEELRKMVRFRRHNLLDDSPFLGKFDLIFCRNVLIYFDEETQERILRRFADSLKPGGLLFL-GHSE 243 (268)
T ss_pred EEChHHhcccEEeecCCCCCccccCCCCEEEEcceEEeeCHHHHHHHHHHHHHHhCCCCEEEE-ccCc
Confidence 1236899999999944 56789999999999999999999999999999999998865 4444
No 133
>PRK10901 16S rRNA methyltransferase B; Provisional
Probab=99.28 E-value=7.4e-11 Score=102.08 Aligned_cols=108 Identities=18% Similarity=0.159 Sum_probs=83.3
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEe
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFD 180 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~i~~ 180 (231)
..++.+|||+|||+|..+..+++.+ .+|+++|+++.+++.+++++...+. +++++++|..+.. ..++||.|++
T Consensus 242 ~~~g~~VLDlgaG~G~~t~~la~~~~~~~v~a~D~s~~~l~~~~~n~~~~g~--~~~~~~~D~~~~~~~~~~~~fD~Vl~ 319 (427)
T PRK10901 242 PQNGERVLDACAAPGGKTAHILELAPQAQVVALDIDAQRLERVRENLQRLGL--KATVIVGDARDPAQWWDGQPFDRILL 319 (427)
T ss_pred CCCCCEEEEeCCCCChHHHHHHHHcCCCEEEEEeCCHHHHHHHHHHHHHcCC--CeEEEEcCcccchhhcccCCCCEEEE
Confidence 3456899999999999999998743 5899999999999999999987764 3689999998742 3468999995
Q ss_pred CCccc------c-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 181 YTFFC------A-------IEP-------EMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 181 ~~~~~------~-------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
..... + ..+ ....++++.+.+.|||||+|++.+.+
T Consensus 320 D~Pcs~~G~~~~~p~~~~~~~~~~l~~l~~~q~~iL~~a~~~LkpGG~lvystcs 374 (427)
T PRK10901 320 DAPCSATGVIRRHPDIKWLRRPEDIAALAALQSEILDALWPLLKPGGTLLYATCS 374 (427)
T ss_pred CCCCCcccccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCC
Confidence 43211 1 111 12357899999999999999877643
No 134
>KOG2899 consensus Predicted methyltransferase [General function prediction only]
Probab=99.27 E-value=6.1e-11 Score=92.00 Aligned_cols=132 Identities=23% Similarity=0.370 Sum_probs=87.4
Q ss_pred cchhhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccC
Q 026903 76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSL 153 (231)
Q Consensus 76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~ 153 (231)
..++.+|+....+ ....+.+..+ +.....+..+|||||.+|.++..+++ .+. .++|+|+++..|..|+++..-.
T Consensus 30 GNf~~YY~~r~~~---~~~D~rLk~L-~~~~f~~~~~LDIGCNsG~lt~~iak~F~~r~iLGvDID~~LI~~Ark~~r~~ 105 (288)
T KOG2899|consen 30 GNFDNYYGFRLNP---GDSDPRLKVL-EKDWFEPKQALDIGCNSGFLTLSIAKDFGPRRILGVDIDPVLIQRARKEIRFP 105 (288)
T ss_pred CCccchhhcccCC---CCCChhhhhc-cccccCcceeEeccCCcchhHHHHHHhhccceeeEeeccHHHHHHHHHhcccc
Confidence 3445555544322 2223333333 44455668999999999999999999 444 7999999999999999976542
Q ss_pred C----------------------------------CCCceEEEE-------ccCCCCCCCCceeEEEeCCc--cccc--C
Q 026903 154 P----------------------------------NAKFVSFLK-------ADFFTWCPTELFDLIFDYTF--FCAI--E 188 (231)
Q Consensus 154 ~----------------------------------~~~~i~~~~-------~d~~~~~~~~~fD~i~~~~~--~~~~--~ 188 (231)
. ..+++.|.. .|+. ......||+|+|..+ +.|+ .
T Consensus 106 ~~~~~~~~~~~~~~~~~~~~~is~~~~a~~a~t~~~p~n~~f~~~n~vle~~dfl-~~~~~~fDiIlcLSiTkWIHLNwg 184 (288)
T KOG2899|consen 106 CDHETEVSGKFPASFGVQFGPISQRNEADRAFTTDFPDNVWFQKENYVLESDDFL-DMIQPEFDIILCLSITKWIHLNWG 184 (288)
T ss_pred ccccccccCCCccccccccccccccccccccccccCCcchhcccccEEEecchhh-hhccccccEEEEEEeeeeEecccc
Confidence 1 001111211 1222 112347999999765 3343 3
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 189 PEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
++-+..+++++.++|.|||+|++.
T Consensus 185 D~GL~~ff~kis~ll~pgGiLvvE 208 (288)
T KOG2899|consen 185 DDGLRRFFRKISSLLHPGGILVVE 208 (288)
T ss_pred cHHHHHHHHHHHHhhCcCcEEEEc
Confidence 577899999999999999999773
No 135
>TIGR00563 rsmB ribosomal RNA small subunit methyltransferase RsmB. The seed alignment is built from bacterial sequences only. Eukaryotic homologs include Nop2, a protein required for processing pre-rRNA, that is likely also a rRNA methyltransferase, although the fine specificity may differ. Cutoff scores are set to avoid treating archaeal and eukaroytic homologs automatically as functionally equivalent, although they may have very similar roles.
Probab=99.27 E-value=6.5e-11 Score=102.41 Aligned_cols=112 Identities=18% Similarity=0.121 Sum_probs=85.1
Q ss_pred CCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEe
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFD 180 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~i~~ 180 (231)
..++.+|||+|||+|..+..+++ ...+++++|+++.+++.+++++.+.+...++.+..+|..... ...+||.|++
T Consensus 236 ~~~g~~VLDlcag~G~kt~~la~~~~~~~v~a~D~~~~~l~~~~~n~~r~g~~~~v~~~~~d~~~~~~~~~~~~fD~Vll 315 (426)
T TIGR00563 236 PQNEETILDACAAPGGKTTHILELAPQAQVVALDIHEHRLKRVYENLKRLGLTIKAETKDGDGRGPSQWAENEQFDRILL 315 (426)
T ss_pred CCCCCeEEEeCCCccHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHHHHHcCCCeEEEEeccccccccccccccccCEEEE
Confidence 34568999999999999998887 236899999999999999999988765534555777776532 3568999996
Q ss_pred C------CcccccCh-------H-------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 181 Y------TFFCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 181 ~------~~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
. .++.+.++ + .+.++|..+.++|||||.|++.+.+..
T Consensus 316 DaPcSg~G~~~~~p~~~~~~~~~~~~~l~~lQ~~lL~~a~~~LkpgG~lvystcs~~ 372 (426)
T TIGR00563 316 DAPCSATGVIRRHPDIKWLRKPRDIAELAELQSEILDAIWPLLKTGGTLVYATCSVL 372 (426)
T ss_pred cCCCCCCcccccCcchhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCcEEEEEeCCCC
Confidence 3 23433221 1 246899999999999999998876553
No 136
>PLN02232 ubiquinone biosynthesis methyltransferase
Probab=99.26 E-value=3.1e-11 Score=90.66 Aligned_cols=82 Identities=20% Similarity=0.143 Sum_probs=68.3
Q ss_pred EEEeCChHHHHHHHHHhccC--CCCCceEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903 134 VGLEISDIAIKKAEELSSSL--PNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 134 ~~iD~s~~~i~~a~~~~~~~--~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 210 (231)
+|+|+|+.+++.|+++.... +...+++|+++|+.+ +.++++||+|++..++++++ ++.++++++.++|||||.|+
T Consensus 1 ~GvD~S~~ML~~A~~~~~~~~~~~~~~i~~~~~d~~~lp~~~~~fD~v~~~~~l~~~~--d~~~~l~ei~rvLkpGG~l~ 78 (160)
T PLN02232 1 MGLDFSSEQLAVAATRQSLKARSCYKCIEWIEGDAIDLPFDDCEFDAVTMGYGLRNVV--DRLRAMKEMYRVLKPGSRVS 78 (160)
T ss_pred CeEcCCHHHHHHHHHhhhcccccCCCceEEEEechhhCCCCCCCeeEEEecchhhcCC--CHHHHHHHHHHHcCcCeEEE
Confidence 48999999999998765422 122469999999998 55667999999999999984 56789999999999999999
Q ss_pred EEEccCC
Q 026903 211 TLMFPIS 217 (231)
Q Consensus 211 ~~~~~~~ 217 (231)
+.++...
T Consensus 79 i~d~~~~ 85 (160)
T PLN02232 79 ILDFNKS 85 (160)
T ss_pred EEECCCC
Confidence 9999764
No 137
>PHA03412 putative methyltransferase; Provisional
Probab=99.26 E-value=1.2e-10 Score=91.49 Aligned_cols=97 Identities=20% Similarity=0.234 Sum_probs=75.1
Q ss_pred CCCcEEEecCCCchHHHHhcC-----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903 108 PKGRALVPGCGTGYDVVAMAS-----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~-----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~ 182 (231)
.+.+|||+|||+|.++..+++ +..+|+++|+++.+++.|+++.. ++.++.+|+......++||+|+++.
T Consensus 49 ~~grVLDlG~GSG~Lalala~~~~~~~~~~V~aVEID~~Al~~Ar~n~~------~~~~~~~D~~~~~~~~~FDlIIsNP 122 (241)
T PHA03412 49 TSGSVVDLCAGIGGLSFAMVHMMMYAKPREIVCVELNHTYYKLGKRIVP------EATWINADALTTEFDTLFDMAISNP 122 (241)
T ss_pred CCCEEEEccChHHHHHHHHHHhcccCCCcEEEEEECCHHHHHHHHhhcc------CCEEEEcchhcccccCCccEEEECC
Confidence 467999999999999998875 24589999999999999998752 4789999998754456899999997
Q ss_pred cccccCh----------HHHHHHHHHHHhhcCCCcEEEE
Q 026903 183 FFCAIEP----------EMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 183 ~~~~~~~----------~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
.+.-... ....++++...+++++|+ +++
T Consensus 123 PY~~~~~~d~~ar~~g~~~~~~li~~A~~Ll~~G~-~IL 160 (241)
T PHA03412 123 PFGKIKTSDFKGKYTGAEFEYKVIERASQIARQGT-FII 160 (241)
T ss_pred CCCCccccccCCcccccHHHHHHHHHHHHHcCCCE-EEe
Confidence 7653221 234668888888666666 444
No 138
>PRK03522 rumB 23S rRNA methyluridine methyltransferase; Reviewed
Probab=99.26 E-value=7.1e-11 Score=98.26 Aligned_cols=105 Identities=23% Similarity=0.169 Sum_probs=81.1
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCcc
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~~~ 184 (231)
.++.+|||+|||+|.++..+++.+.+|+|+|.++.+++.|+++...+++ ++++|+++|+.+.. ..+.||+|++...-
T Consensus 172 ~~~~~VLDl~cG~G~~sl~la~~~~~V~gvD~s~~av~~A~~n~~~~~l-~~v~~~~~D~~~~~~~~~~~~D~Vv~dPPr 250 (315)
T PRK03522 172 LPPRSMWDLFCGVGGFGLHCATPGMQLTGIEISAEAIACAKQSAAELGL-TNVQFQALDSTQFATAQGEVPDLVLVNPPR 250 (315)
T ss_pred cCCCEEEEccCCCCHHHHHHHhcCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEcCHHHHHHhcCCCCeEEEECCCC
Confidence 3468999999999999999999889999999999999999999987766 57999999998743 23479999976442
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
.-+. ..++ .+...++|++++|+.+-+..
T Consensus 251 ~G~~----~~~~-~~l~~~~~~~ivyvsc~p~t 278 (315)
T PRK03522 251 RGIG----KELC-DYLSQMAPRFILYSSCNAQT 278 (315)
T ss_pred CCcc----HHHH-HHHHHcCCCeEEEEECCccc
Confidence 2221 2233 33444788999988776554
No 139
>PLN02589 caffeoyl-CoA O-methyltransferase
Probab=99.25 E-value=4.9e-11 Score=95.18 Aligned_cols=102 Identities=16% Similarity=0.181 Sum_probs=84.7
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--------CCce
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--------TELF 175 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--------~~~f 175 (231)
.+.++|||||+++|+-++.++. .+.+++.+|.+++..+.|++++...++.++|+++.++..+..+ .++|
T Consensus 78 ~~ak~iLEiGT~~GySal~la~al~~~g~v~tiE~~~~~~~~Ar~~~~~ag~~~~I~~~~G~a~e~L~~l~~~~~~~~~f 157 (247)
T PLN02589 78 INAKNTMEIGVYTGYSLLATALALPEDGKILAMDINRENYELGLPVIQKAGVAHKIDFREGPALPVLDQMIEDGKYHGTF 157 (247)
T ss_pred hCCCEEEEEeChhhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHCCCCCceEEEeccHHHHHHHHHhccccCCcc
Confidence 3457999999999999998886 4569999999999999999999998888999999999888322 2589
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
|+||.-.- ......++..+.++|+|||++++-.
T Consensus 158 D~iFiDad-----K~~Y~~y~~~~l~ll~~GGviv~DN 190 (247)
T PLN02589 158 DFIFVDAD-----KDNYINYHKRLIDLVKVGGVIGYDN 190 (247)
T ss_pred cEEEecCC-----HHHhHHHHHHHHHhcCCCeEEEEcC
Confidence 99995332 3455778889999999999987643
No 140
>PLN02366 spermidine synthase
Probab=99.25 E-value=1.3e-10 Score=95.84 Aligned_cols=105 Identities=18% Similarity=0.206 Sum_probs=81.2
Q ss_pred CCCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCCC---CCCceeEE
Q 026903 107 LPKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWC---PTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~---~~~~fD~i 178 (231)
.++++||++|||.|..+..+++. + .+|+.+|+++++++.+++.+.... .+++++++.+|..... +.+.||+|
T Consensus 90 ~~pkrVLiIGgG~G~~~rellk~~~v~~V~~VEiD~~Vi~~ar~~f~~~~~~~~dpRv~vi~~Da~~~l~~~~~~~yDvI 169 (308)
T PLN02366 90 PNPKKVLVVGGGDGGVLREIARHSSVEQIDICEIDKMVIDVSKKFFPDLAVGFDDPRVNLHIGDGVEFLKNAPEGTYDAI 169 (308)
T ss_pred CCCCeEEEEcCCccHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhhhhhccccCCCceEEEEChHHHHHhhccCCCCCEE
Confidence 34589999999999999999883 3 489999999999999999875421 2458999999987632 24589999
Q ss_pred EeCCcccccChH--HHHHHHHHHHhhcCCCcEEEE
Q 026903 179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~ 211 (231)
++...-.+.+.. ....+++.+.++|+|||++++
T Consensus 170 i~D~~dp~~~~~~L~t~ef~~~~~~~L~pgGvlv~ 204 (308)
T PLN02366 170 IVDSSDPVGPAQELFEKPFFESVARALRPGGVVCT 204 (308)
T ss_pred EEcCCCCCCchhhhhHHHHHHHHHHhcCCCcEEEE
Confidence 986543332221 235789999999999999865
No 141
>COG2519 GCD14 tRNA(1-methyladenosine) methyltransferase and related methyltransferases [Translation, ribosomal structure and biogenesis]
Probab=99.25 E-value=5.1e-11 Score=93.56 Aligned_cols=100 Identities=26% Similarity=0.268 Sum_probs=86.1
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~ 182 (231)
..|+.+|||.|.|+|.++..|+. +-.+|+.+|+.+..++.|++|+...++.+++++..+|+.+...++.||.|+
T Consensus 92 i~pg~rVlEAGtGSG~lt~~La~~vg~~G~v~tyE~r~d~~k~A~~Nl~~~~l~d~v~~~~~Dv~~~~~~~~vDav~--- 168 (256)
T COG2519 92 ISPGSRVLEAGTGSGALTAYLARAVGPEGHVTTYEIREDFAKTARENLSEFGLGDRVTLKLGDVREGIDEEDVDAVF--- 168 (256)
T ss_pred CCCCCEEEEcccCchHHHHHHHHhhCCCceEEEEEecHHHHHHHHHHHHHhccccceEEEeccccccccccccCEEE---
Confidence 45679999999999999999996 335899999999999999999998888788999999999966666999999
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
++-++.-.++..+.+.|+|||.+++.
T Consensus 169 ----LDmp~PW~~le~~~~~Lkpgg~~~~y 194 (256)
T COG2519 169 ----LDLPDPWNVLEHVSDALKPGGVVVVY 194 (256)
T ss_pred ----EcCCChHHHHHHHHHHhCCCcEEEEE
Confidence 44445567899999999999987653
No 142
>KOG1975 consensus mRNA cap methyltransferase [RNA processing and modification]
Probab=99.24 E-value=3.2e-11 Score=97.13 Aligned_cols=120 Identities=20% Similarity=0.248 Sum_probs=90.7
Q ss_pred CcHHHHHHH-HcCCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCC-----CCCceEEEEccC
Q 026903 94 PAPIIVHLH-QSGALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLP-----NAKFVSFLKADF 166 (231)
Q Consensus 94 ~~~~~~~~~-~~~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~-----~~~~i~~~~~d~ 166 (231)
-+.+++..+ .....+...++++|||.|..++..-+.|. .++|+|+.+..|+.|+++...-. ..-.+.|+.+|.
T Consensus 102 fNNwIKs~LI~~y~~~~~~~~~LgCGKGGDLlKw~kAgI~~~igiDIAevSI~qa~~RYrdm~~r~~~~~f~a~f~~~Dc 181 (389)
T KOG1975|consen 102 FNNWIKSVLINLYTKRGDDVLDLGCGKGGDLLKWDKAGIGEYIGIDIAEVSINQARKRYRDMKNRFKKFIFTAVFIAADC 181 (389)
T ss_pred hhHHHHHHHHHHHhccccccceeccCCcccHhHhhhhcccceEeeehhhccHHHHHHHHHHHHhhhhcccceeEEEEecc
Confidence 355555433 33355668999999999999999888776 89999999999999998764321 112478999998
Q ss_pred CC-----CC--CCCceeEEEeCCccccc--ChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 167 FT-----WC--PTELFDLIFDYTFFCAI--EPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 167 ~~-----~~--~~~~fD~i~~~~~~~~~--~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
+. .. ++.+||+|=|.+++|+- +.+...-+|+.+..+|+|||+++-..
T Consensus 182 ~~~~l~d~~e~~dp~fDivScQF~~HYaFetee~ar~~l~Nva~~LkpGG~FIgTi 237 (389)
T KOG1975|consen 182 FKERLMDLLEFKDPRFDIVSCQFAFHYAFETEESARIALRNVAKCLKPGGVFIGTI 237 (389)
T ss_pred chhHHHHhccCCCCCcceeeeeeeEeeeeccHHHHHHHHHHHHhhcCCCcEEEEec
Confidence 77 11 23349999999999874 44666789999999999999987543
No 143
>PLN02672 methionine S-methyltransferase
Probab=99.24 E-value=7.9e-11 Score=110.12 Aligned_cols=123 Identities=22% Similarity=0.208 Sum_probs=89.7
Q ss_pred CCCCCcHHHHHHHHcC---C---CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCC------
Q 026903 90 DIGQPAPIIVHLHQSG---A---LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPN------ 155 (231)
Q Consensus 90 ~~~~~~~~~~~~~~~~---~---~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~------ 155 (231)
....|++..+.+++.. . .++.+|||+|||+|..++.+++ +..+|+++|+|+.+++.|++|...+++
T Consensus 94 ~VLIPRpeTE~lve~L~~~~~~~~~~~~VLDlG~GSG~Iai~La~~~~~~~v~avDis~~Al~~A~~Na~~n~l~~~~~~ 173 (1082)
T PLN02672 94 SIFIPEDWSFTFYEGLNRHPDSIFRDKTVAELGCGNGWISIAIAEKWLPSKVYGLDINPRAVKVAWINLYLNALDDDGLP 173 (1082)
T ss_pred CcccCchhHHHHHHHHHhcccccCCCCEEEEEecchHHHHHHHHHHCCCCEEEEEECCHHHHHHHHHHHHHcCccccccc
Confidence 3455666655555432 1 1235899999999999999987 345999999999999999999876432
Q ss_pred ---------CCceEEEEccCCCCCCC--CceeEEEeCCccc------ccCh-----------------------------
Q 026903 156 ---------AKFVSFLKADFFTWCPT--ELFDLIFDYTFFC------AIEP----------------------------- 189 (231)
Q Consensus 156 ---------~~~i~~~~~d~~~~~~~--~~fD~i~~~~~~~------~~~~----------------------------- 189 (231)
.++++|+++|+.+.... ..||+|+++..+. .+++
T Consensus 174 ~~~~~~~~l~~rV~f~~sDl~~~~~~~~~~fDlIVSNPPYI~~~e~~~l~~eV~~~ep~~~~~~~~p~~AL~g~~~g~dG 253 (1082)
T PLN02672 174 VYDGEGKTLLDRVEFYESDLLGYCRDNNIELDRIVGCIPQILNPNPEAMSKLVTENASEEFLYSLSNYCALQGFVEDQFG 253 (1082)
T ss_pred ccccccccccccEEEEECchhhhccccCCceEEEEECCCcCCCcchhhcChhhhhccccccccccCccccccCCCCCCcH
Confidence 24799999999986543 3699999985432 1111
Q ss_pred -HHHHHHHHHHHhhcCCCcEEEEE
Q 026903 190 -EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 190 -~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
....+++....++|+|||.+++.
T Consensus 254 L~~yr~i~~~a~~~L~pgG~l~lE 277 (1082)
T PLN02672 254 LGLIARAVEEGISVIKPMGIMIFN 277 (1082)
T ss_pred HHHHHHHHHHHHHhccCCCEEEEE
Confidence 12257788888999999988753
No 144
>PRK14903 16S rRNA methyltransferase B; Provisional
Probab=99.24 E-value=1.2e-10 Score=100.69 Aligned_cols=111 Identities=18% Similarity=0.167 Sum_probs=85.9
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEe
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFD 180 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~ 180 (231)
..++.+|||+|||+|..+..++. .+.+|+++|+++..++.+++++.+.++. +++++.+|...+. ..++||.|++
T Consensus 235 ~~~g~~VLD~cagpGgkt~~la~~~~~~g~V~a~Dis~~rl~~~~~n~~r~g~~-~v~~~~~Da~~l~~~~~~~fD~Vl~ 313 (431)
T PRK14903 235 LEPGLRVLDTCAAPGGKTTAIAELMKDQGKILAVDISREKIQLVEKHAKRLKLS-SIEIKIADAERLTEYVQDTFDRILV 313 (431)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEECCHHHHHHHHHHHHHcCCC-eEEEEECchhhhhhhhhccCCEEEE
Confidence 34568999999999999988876 3569999999999999999999887654 5899999987743 3467999997
Q ss_pred CCcc------cc-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 181 YTFF------CA-------IEP-------EMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 181 ~~~~------~~-------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
.... .. .++ ..+.++|..+.+.|||||+|+..+-+..
T Consensus 314 DaPCsg~G~~~~~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~LkpGG~LvYsTCs~~ 370 (431)
T PRK14903 314 DAPCTSLGTARNHPEVLRRVNKEDFKKLSEIQLRIVSQAWKLLEKGGILLYSTCTVT 370 (431)
T ss_pred CCCCCCCccccCChHHHHhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCCC
Confidence 4221 11 111 1346789999999999999988776544
No 145
>PF10294 Methyltransf_16: Putative methyltransferase; InterPro: IPR019410 There are a number of unidentified genes that have a high probability of coding for methyltransferases. They make up approximately 0.6-1.6% of the genes in the yeast, human, mouse, Drosophila melanogaster, Caenorhabditis elegans, Arabidopsis thaliana, and Escherichia coli genomes []. This entry represents putative nicotinamide N-methyltransferases involved in rDNA silencing and in lifespan determination. ; PDB: 3BZB_A.
Probab=99.24 E-value=5.7e-11 Score=90.35 Aligned_cols=105 Identities=21% Similarity=0.214 Sum_probs=74.2
Q ss_pred CCCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCC--CCCceEEEEccCCCC-----CCCCcee
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTW-----CPTELFD 176 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~-----~~~~~fD 176 (231)
..++.+|||+|||+|..++.++.. +.+|+.+|.++ .++.++.++..+. ...++.+...|+.+. ....+||
T Consensus 43 ~~~~~~VLELGaG~Gl~gi~~a~~~~~~~Vv~TD~~~-~l~~l~~Ni~~N~~~~~~~v~v~~L~Wg~~~~~~~~~~~~~D 121 (173)
T PF10294_consen 43 LFRGKRVLELGAGTGLPGIAAAKLFGAARVVLTDYNE-VLELLRRNIELNGSLLDGRVSVRPLDWGDELDSDLLEPHSFD 121 (173)
T ss_dssp GTTTSEEEETT-TTSHHHHHHHHT-T-SEEEEEE-S--HHHHHHHHHHTT--------EEEE--TTS-HHHHHHS-SSBS
T ss_pred hcCCceEEEECCccchhHHHHHhccCCceEEEeccch-hhHHHHHHHHhccccccccccCcEEEecCcccccccccccCC
Confidence 445689999999999999999986 56999999998 9999999988765 456789999988762 2345899
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
+|++..+++. ++..+.+++.+.++|+|+|.+++..
T Consensus 122 ~IlasDv~Y~--~~~~~~L~~tl~~ll~~~~~vl~~~ 156 (173)
T PF10294_consen 122 VILASDVLYD--EELFEPLVRTLKRLLKPNGKVLLAY 156 (173)
T ss_dssp EEEEES--S---GGGHHHHHHHHHHHBTT-TTEEEEE
T ss_pred EEEEecccch--HHHHHHHHHHHHHHhCCCCEEEEEe
Confidence 9999999875 3677899999999999999965544
No 146
>TIGR00417 speE spermidine synthase. the SpeE subunit of spermidine synthase catalysesthe reaction (putrescine + S-adenosylmethioninamine = spermidine + 5'-methylthioadenosine) and is involved in polyamine biosynthesis and in the biosynthesis of spermidine from arganine. The region between residues 77 and 120 of the seed alignment is thought to be involved in binding to decarboxylated SAM.
Probab=99.23 E-value=1.3e-10 Score=94.71 Aligned_cols=105 Identities=19% Similarity=0.195 Sum_probs=79.7
Q ss_pred CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCCC--CCCceeEEEe
Q 026903 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWC--PTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~--~~~~fD~i~~ 180 (231)
.+.+||++|||+|..+..+++. ..+++++|+++++++.+++.+.... ..++++++.+|..+.. ..++||+|++
T Consensus 72 ~p~~VL~iG~G~G~~~~~ll~~~~~~~v~~veid~~vi~~a~~~~~~~~~~~~~~~v~i~~~D~~~~l~~~~~~yDvIi~ 151 (270)
T TIGR00417 72 NPKHVLVIGGGDGGVLREVLKHKSVEKATLVDIDEKVIELSKKFLPSLAGSYDDPRVDLQIDDGFKFLADTENTFDVIIV 151 (270)
T ss_pred CCCEEEEEcCCchHHHHHHHhCCCcceEEEEeCCHHHHHHHHHHhHhhcccccCCceEEEECchHHHHHhCCCCccEEEE
Confidence 3469999999999999888774 3589999999999999999764421 1357888888877632 2468999998
Q ss_pred CCcccccChHH--HHHHHHHHHhhcCCCcEEEEE
Q 026903 181 YTFFCAIEPEM--RAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 181 ~~~~~~~~~~~--~~~~l~~~~~~L~pgG~l~~~ 212 (231)
......-+... ...+++.+.+.|+|||++++.
T Consensus 152 D~~~~~~~~~~l~~~ef~~~~~~~L~pgG~lv~~ 185 (270)
T TIGR00417 152 DSTDPVGPAETLFTKEFYELLKKALNEDGIFVAQ 185 (270)
T ss_pred eCCCCCCcccchhHHHHHHHHHHHhCCCcEEEEc
Confidence 65432222222 367889999999999998875
No 147
>TIGR00446 nop2p NOL1/NOP2/sun family putative RNA methylase.
Probab=99.21 E-value=1.7e-10 Score=93.60 Aligned_cols=111 Identities=19% Similarity=0.114 Sum_probs=83.9
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeC
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDY 181 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~ 181 (231)
..++.+|||+|||+|..+..++. ....|+++|+++.+++.+++++...+.. ++.++..|..... ....||.|++.
T Consensus 69 ~~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~fD~Vl~D 147 (264)
T TIGR00446 69 PDPPERVLDMAAAPGGKTTQISALMKNEGAIVANEFSKSRTKVLIANINRCGVL-NVAVTNFDGRVFGAAVPKFDAILLD 147 (264)
T ss_pred CCCcCEEEEECCCchHHHHHHHHHcCCCCEEEEEcCCHHHHHHHHHHHHHcCCC-cEEEecCCHHHhhhhccCCCEEEEc
Confidence 34668999999999999988876 2348999999999999999999887653 5899999987632 33469999964
Q ss_pred Cc------ccc-------cChH-------HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 182 TF------FCA-------IEPE-------MRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 182 ~~------~~~-------~~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
.. +.+ ..++ ...++|+...+.|||||+|+..+-+..
T Consensus 148 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~lkpgG~lvYstcs~~ 203 (264)
T TIGR00446 148 APCSGEGVIRKDPSRKKNWSEEDIQEISALQKELIDSAFDALKPGGVLVYSTCSLE 203 (264)
T ss_pred CCCCCCcccccChhhhhcCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCCC
Confidence 22 111 1111 235799999999999999988765443
No 148
>PRK14901 16S rRNA methyltransferase B; Provisional
Probab=99.21 E-value=2e-10 Score=99.64 Aligned_cols=109 Identities=20% Similarity=0.188 Sum_probs=85.1
Q ss_pred CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEE
Q 026903 107 LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i 178 (231)
.++.+|||+|||+|..+..+++. ..+|+++|+++.+++.+++++...+.. +++++.+|..+.. ..+.||.|
T Consensus 251 ~~g~~VLDl~ag~G~kt~~la~~~~~~g~v~a~D~~~~rl~~~~~n~~r~g~~-~v~~~~~D~~~~~~~~~~~~~~fD~V 329 (434)
T PRK14901 251 QPGEVILDACAAPGGKTTHIAELMGDQGEIWAVDRSASRLKKLQENAQRLGLK-SIKILAADSRNLLELKPQWRGYFDRI 329 (434)
T ss_pred CCcCEEEEeCCCCchhHHHHHHHhCCCceEEEEcCCHHHHHHHHHHHHHcCCC-eEEEEeCChhhcccccccccccCCEE
Confidence 45689999999999999988872 358999999999999999999887764 5999999988743 24689999
Q ss_pred EeCC------cccccCh-------H-------HHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 179 FDYT------FFCAIEP-------E-------MRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 179 ~~~~------~~~~~~~-------~-------~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
++.. ++.+-++ + .+.++|..+.+.|||||+|+..+.+.
T Consensus 330 l~DaPCSg~G~~~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~lkpgG~lvystcsi 387 (434)
T PRK14901 330 LLDAPCSGLGTLHRHPDARWRQTPEKIQELAPLQAELLESLAPLLKPGGTLVYATCTL 387 (434)
T ss_pred EEeCCCCcccccccCcchhhhCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 9642 3332221 1 24688999999999999998776443
No 149
>PRK13168 rumA 23S rRNA m(5)U1939 methyltransferase; Reviewed
Probab=99.20 E-value=1.7e-10 Score=100.26 Aligned_cols=103 Identities=22% Similarity=0.188 Sum_probs=80.3
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeC
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDY 181 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~~ 181 (231)
.++.+|||+|||+|.++..+++.+.+|+|+|+|+.+++.|+++...++. .+++|+.+|+.+.. ...+||+|++.
T Consensus 296 ~~~~~VLDlgcGtG~~sl~la~~~~~V~gvD~s~~al~~A~~n~~~~~~-~~v~~~~~d~~~~l~~~~~~~~~fD~Vi~d 374 (443)
T PRK13168 296 QPGDRVLDLFCGLGNFTLPLARQAAEVVGVEGVEAMVERARENARRNGL-DNVTFYHANLEEDFTDQPWALGGFDKVLLD 374 (443)
T ss_pred CCCCEEEEEeccCCHHHHHHHHhCCEEEEEeCCHHHHHHHHHHHHHcCC-CceEEEEeChHHhhhhhhhhcCCCCEEEEC
Confidence 3457999999999999999999888999999999999999999877654 36999999997632 23579999965
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
....-+ ...++.+.+ ++|++++|+++-+.
T Consensus 375 PPr~g~-----~~~~~~l~~-~~~~~ivyvSCnp~ 403 (443)
T PRK13168 375 PPRAGA-----AEVMQALAK-LGPKRIVYVSCNPA 403 (443)
T ss_pred cCCcCh-----HHHHHHHHh-cCCCeEEEEEeChH
Confidence 443322 234555544 69999999987543
No 150
>PRK01581 speE spermidine synthase; Validated
Probab=99.20 E-value=2.3e-10 Score=95.21 Aligned_cols=107 Identities=18% Similarity=0.183 Sum_probs=79.9
Q ss_pred CCCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHH--hc---cCC-CCCceEEEEccCCCCC--CCCce
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEEL--SS---SLP-NAKFVSFLKADFFTWC--PTELF 175 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~--~~---~~~-~~~~i~~~~~d~~~~~--~~~~f 175 (231)
...+.+||++|||.|..+..+++. ..+|+.+|+++++++.|++. +. ... ..++++++.+|..++. ..+.|
T Consensus 148 h~~PkrVLIIGgGdG~tlrelLk~~~v~~It~VEIDpeVIelAr~~~~L~~~~~~~~~DpRV~vvi~Da~~fL~~~~~~Y 227 (374)
T PRK01581 148 VIDPKRVLILGGGDGLALREVLKYETVLHVDLVDLDGSMINMARNVPELVSLNKSAFFDNRVNVHVCDAKEFLSSPSSLY 227 (374)
T ss_pred CCCCCEEEEECCCHHHHHHHHHhcCCCCeEEEEeCCHHHHHHHHhccccchhccccCCCCceEEEECcHHHHHHhcCCCc
Confidence 344589999999999999988873 35999999999999999972 11 111 2468999999999843 34589
Q ss_pred eEEEeCCccc---ccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 176 DLIFDYTFFC---AIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 176 D~i~~~~~~~---~~~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
|+|++...-. ....-....+++.+.+.|+|||++++.
T Consensus 228 DVIIvDl~DP~~~~~~~LyT~EFy~~~~~~LkPgGV~V~Q 267 (374)
T PRK01581 228 DVIIIDFPDPATELLSTLYTSELFARIATFLTEDGAFVCQ 267 (374)
T ss_pred cEEEEcCCCccccchhhhhHHHHHHHHHHhcCCCcEEEEe
Confidence 9999874321 111123367899999999999998765
No 151
>COG0220 Predicted S-adenosylmethionine-dependent methyltransferase [General function prediction only]
Probab=99.20 E-value=1.3e-10 Score=91.57 Aligned_cols=103 Identities=24% Similarity=0.196 Sum_probs=84.8
Q ss_pred CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEEeCCc
Q 026903 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFDYTF 183 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~~~~~ 183 (231)
..+||||||.|.++..+|+ +...++|||+....+..|.+.+.+.++. |+.++++|+.. ..++++.|-|+.++.
T Consensus 50 pi~lEIGfG~G~~l~~~A~~nP~~nfiGiEi~~~~v~~~l~k~~~~~l~-Nlri~~~DA~~~l~~~~~~~sl~~I~i~FP 128 (227)
T COG0220 50 PIVLEIGFGMGEFLVEMAKKNPEKNFLGIEIRVPGVAKALKKIKELGLK-NLRLLCGDAVEVLDYLIPDGSLDKIYINFP 128 (227)
T ss_pred cEEEEECCCCCHHHHHHHHHCCCCCEEEEEEehHHHHHHHHHHHHcCCC-cEEEEcCCHHHHHHhcCCCCCeeEEEEECC
Confidence 5999999999999999998 6669999999999999999988887754 79999999888 345559999997765
Q ss_pred ccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903 184 FCAIEPE------MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 184 ~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
-.|.-.. ....+++.+.+.|+|||.|.+.+
T Consensus 129 DPWpKkRH~KRRl~~~~fl~~~a~~Lk~gG~l~~aT 164 (227)
T COG0220 129 DPWPKKRHHKRRLTQPEFLKLYARKLKPGGVLHFAT 164 (227)
T ss_pred CCCCCccccccccCCHHHHHHHHHHccCCCEEEEEe
Confidence 4432111 22689999999999999998865
No 152
>PRK14902 16S rRNA methyltransferase B; Provisional
Probab=99.19 E-value=2.3e-10 Score=99.55 Aligned_cols=108 Identities=19% Similarity=0.135 Sum_probs=83.2
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeC
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDY 181 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~ 181 (231)
.++.+|||+|||+|..+..+++ ...+|+++|+++.+++.+++++...+.. +++++++|+.+... .+.||+|++.
T Consensus 249 ~~g~~VLDlgaG~G~~t~~la~~~~~~~~v~avDi~~~~l~~~~~n~~~~g~~-~v~~~~~D~~~~~~~~~~~fD~Vl~D 327 (444)
T PRK14902 249 KGGDTVLDACAAPGGKTTHIAELLKNTGKVVALDIHEHKLKLIEENAKRLGLT-NIETKALDARKVHEKFAEKFDKILVD 327 (444)
T ss_pred CCCCEEEEeCCCCCHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCCcccccchhcccCCEEEEc
Confidence 3557999999999999999887 2459999999999999999999887764 49999999987431 2679999975
Q ss_pred Ccc------ccc-------ChH-------HHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 182 TFF------CAI-------EPE-------MRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 182 ~~~------~~~-------~~~-------~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
... .+- .+. ....+|+.+.++|||||.|+..+-+
T Consensus 328 ~Pcsg~G~~~~~p~~~~~~~~~~~~~l~~~q~~iL~~a~~~LkpGG~lvystcs 381 (444)
T PRK14902 328 APCSGLGVIRRKPDIKYNKTKEDIESLQEIQLEILESVAQYLKKGGILVYSTCT 381 (444)
T ss_pred CCCCCCeeeccCcchhhcCCHHHHHHHHHHHHHHHHHHHHHcCCCCEEEEEcCC
Confidence 321 111 111 1356899999999999999865543
No 153
>PF06080 DUF938: Protein of unknown function (DUF938); InterPro: IPR010342 This family consists of several hypothetical proteins from both prokaryotes and eukaryotes. The function of this family is unknown.
Probab=99.19 E-value=2e-10 Score=88.21 Aligned_cols=103 Identities=20% Similarity=0.106 Sum_probs=80.6
Q ss_pred cEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----C-----CCCceeEEE
Q 026903 111 RALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----C-----PTELFDLIF 179 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~-----~~~~fD~i~ 179 (231)
+|||||||+|..+..+++ +.....-.|+++......+......+...-..-+..|+... . ....||.|+
T Consensus 28 ~vLEiaSGtGqHa~~FA~~lP~l~WqPSD~~~~~~~sI~a~~~~~~~~Nv~~P~~lDv~~~~w~~~~~~~~~~~~~D~i~ 107 (204)
T PF06080_consen 28 RVLEIASGTGQHAVYFAQALPHLTWQPSDPDDNLRPSIRAWIAEAGLPNVRPPLALDVSAPPWPWELPAPLSPESFDAIF 107 (204)
T ss_pred eEEEEcCCccHHHHHHHHHCCCCEEcCCCCChHHHhhHHHHHHhcCCcccCCCeEeecCCCCCccccccccCCCCcceee
Confidence 599999999999999998 66788899999998766666554443322123345566552 1 245899999
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
|.+++|-++.+....+++...++|++||.|++..
T Consensus 108 ~~N~lHI~p~~~~~~lf~~a~~~L~~gG~L~~YG 141 (204)
T PF06080_consen 108 CINMLHISPWSAVEGLFAGAARLLKPGGLLFLYG 141 (204)
T ss_pred ehhHHHhcCHHHHHHHHHHHHHhCCCCCEEEEeC
Confidence 9999999988899999999999999999987744
No 154
>TIGR02085 meth_trns_rumB 23S rRNA (uracil-5-)-methyltransferase RumB. This family consists of RNA methyltransferases designated RumB, formerly YbjF. Members act on 23S rRNA U747 and the equivalent position in other proteobacterial species. This family is homologous to the other 23S rRNA methyltransferase RumA and to the tRNA methyltransferase TrmA.
Probab=99.19 E-value=1.4e-10 Score=98.64 Aligned_cols=103 Identities=19% Similarity=0.164 Sum_probs=81.3
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeCCcc
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~~~~ 184 (231)
.++.+|||+|||+|.+++.++..+..|+++|+++.+++.|+++...++.. +++|+.+|+.+... ...||+|+.....
T Consensus 232 ~~~~~vLDL~cG~G~~~l~la~~~~~v~~vE~~~~av~~a~~N~~~~~~~-~~~~~~~d~~~~~~~~~~~~D~vi~DPPr 310 (374)
T TIGR02085 232 IPVTQMWDLFCGVGGFGLHCAGPDTQLTGIEIESEAIACAQQSAQMLGLD-NLSFAALDSAKFATAQMSAPELVLVNPPR 310 (374)
T ss_pred cCCCEEEEccCCccHHHHHHhhcCCeEEEEECCHHHHHHHHHHHHHcCCC-cEEEEECCHHHHHHhcCCCCCEEEECCCC
Confidence 34579999999999999999998889999999999999999999877653 79999999977432 2469999976554
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
..+. ..+++.+. .++|++++|+.+-+
T Consensus 311 ~G~~----~~~l~~l~-~~~p~~ivyvsc~p 336 (374)
T TIGR02085 311 RGIG----KELCDYLS-QMAPKFILYSSCNA 336 (374)
T ss_pred CCCc----HHHHHHHH-hcCCCeEEEEEeCH
Confidence 4333 33445554 47999999998754
No 155
>KOG1499 consensus Protein arginine N-methyltransferase PRMT1 and related enzymes [Posttranslational modification, protein turnover, chaperones; Transcription; Signal transduction mechanisms]
Probab=99.18 E-value=8.8e-11 Score=96.04 Aligned_cols=104 Identities=21% Similarity=0.195 Sum_probs=85.3
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCc
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~ 183 (231)
...++.|||+|||+|.++++.|+.|+ +|+++|.|.-+ +.|.+.+..+++.+.|+++++.+++ -.|.+..|+|++-+.
T Consensus 58 lf~dK~VlDVGcGtGILS~F~akAGA~~V~aVe~S~ia-~~a~~iv~~N~~~~ii~vi~gkvEdi~LP~eKVDiIvSEWM 136 (346)
T KOG1499|consen 58 LFKDKTVLDVGCGTGILSMFAAKAGARKVYAVEASSIA-DFARKIVKDNGLEDVITVIKGKVEDIELPVEKVDIIVSEWM 136 (346)
T ss_pred hcCCCEEEEcCCCccHHHHHHHHhCcceEEEEechHHH-HHHHHHHHhcCccceEEEeecceEEEecCccceeEEeehhh
Confidence 35678999999999999999999988 99999997766 9999999988888889999999999 344578999999876
Q ss_pred ccccC-hHHHHHHHHHHHhhcCCCcEEE
Q 026903 184 FCAIE-PEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 184 ~~~~~-~~~~~~~l~~~~~~L~pgG~l~ 210 (231)
-+.+- ..-+..+|-.=-+.|+|||.++
T Consensus 137 Gy~Ll~EsMldsVl~ARdkwL~~~G~i~ 164 (346)
T KOG1499|consen 137 GYFLLYESMLDSVLYARDKWLKEGGLIY 164 (346)
T ss_pred hHHHHHhhhhhhhhhhhhhccCCCceEc
Confidence 55442 2344555555668999999875
No 156
>KOG2904 consensus Predicted methyltransferase [General function prediction only]
Probab=99.18 E-value=1.1e-09 Score=86.61 Aligned_cols=107 Identities=17% Similarity=0.158 Sum_probs=82.8
Q ss_pred CCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----C--CCCCceeEE
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----W--CPTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~--~~~~~fD~i 178 (231)
..+..+||+|||+|..+..++. +...|+++|.|+.++..|.+|++++.+.+++.+++.++.. . ...+++|++
T Consensus 147 ~~~~~ildlgtGSGaIslsll~~L~~~~v~AiD~S~~Ai~La~eN~qr~~l~g~i~v~~~~me~d~~~~~~l~~~~~dll 226 (328)
T KOG2904|consen 147 SKHTHILDLGTGSGAISLSLLHGLPQCTVTAIDVSKAAIKLAKENAQRLKLSGRIEVIHNIMESDASDEHPLLEGKIDLL 226 (328)
T ss_pred cccceEEEecCCccHHHHHHHhcCCCceEEEEeccHHHHHHHHHHHHHHhhcCceEEEecccccccccccccccCceeEE
Confidence 3445899999999999999988 5558999999999999999999999888899988665555 2 345789999
Q ss_pred EeCCcccccCh------------------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 179 FDYTFFCAIEP------------------------EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 179 ~~~~~~~~~~~------------------------~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
+|+..+..-++ +....++.-..+.|+|||.+.+..
T Consensus 227 vsNPPYI~~dD~~~l~~eV~~yEp~lALdGg~eG~~~~~~~~~~a~R~Lq~gg~~~le~ 285 (328)
T KOG2904|consen 227 VSNPPYIRKDDNRQLKPEVRLYEPKLALDGGLEGYDNLVHYWLLATRMLQPGGFEQLEL 285 (328)
T ss_pred ecCCCcccccchhhcCchheecCchhhhccccchhHHHHHHHHhhHhhcccCCeEEEEe
Confidence 99865432111 122466777889999999775533
No 157
>TIGR00095 RNA methyltransferase, RsmD family. This model represents a family of uncharacterized bacterial proteins. Members are present in nearly every complete bacterial genome, always in a single copy. PSI-BLAST analysis shows homology to several families of SAM-dependent methyltransferases, including ribosomal RNA adenine dimethylases.
Probab=99.18 E-value=4.5e-10 Score=86.54 Aligned_cols=106 Identities=11% Similarity=-0.049 Sum_probs=79.1
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CC-CceeEEEe
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PT-ELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~-~~fD~i~~ 180 (231)
..+.+|||++||+|.+++.++++|. .|+++|.++.+++.+++++...+..++++++++|+.... .. ..||+|+.
T Consensus 48 ~~g~~vLDLfaGsG~lglea~srga~~v~~vE~~~~a~~~~~~N~~~~~~~~~~~~~~~D~~~~l~~~~~~~~~~dvv~~ 127 (189)
T TIGR00095 48 IQGAHLLDVFAGSGLLGEEALSRGAKVAFLEEDDRKANQTLKENLALLKSGEQAEVVRNSALRALKFLAKKPTFDNVIYL 127 (189)
T ss_pred cCCCEEEEecCCCcHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHhCCcccEEEEehhHHHHHHHhhccCCCceEEEE
Confidence 4568999999999999999999887 899999999999999999888776667999999996631 12 24888886
Q ss_pred CCcccccChHHHHHHHHHHH--hhcCCCcEEEEEEccC
Q 026903 181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPI 216 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~ 216 (231)
...+.. ......+..+. ..|+++|.+++ ++..
T Consensus 128 DPPy~~---~~~~~~l~~l~~~~~l~~~~iiv~-E~~~ 161 (189)
T TIGR00095 128 DPPFFN---GALQALLELCENNWILEDTVLIVV-EEDR 161 (189)
T ss_pred CcCCCC---CcHHHHHHHHHHCCCCCCCeEEEE-EecC
Confidence 555432 12234444443 36888886655 4444
No 158
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=99.15 E-value=1.1e-11 Score=95.42 Aligned_cols=112 Identities=21% Similarity=0.241 Sum_probs=84.3
Q ss_pred HHHHHHHcCCCCC-CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCC
Q 026903 97 IIVHLHQSGALPK-GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT 172 (231)
Q Consensus 97 ~~~~~~~~~~~~~-~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~ 172 (231)
.+.+++......+ .++||+|||||.....+.....+.+|+|+|+.|+++|.++-.-. +..+.++.. ....
T Consensus 113 ~l~emI~~~~~g~F~~~lDLGCGTGL~G~~lR~~a~~ltGvDiS~nMl~kA~eKg~YD------~L~~Aea~~Fl~~~~~ 186 (287)
T COG4976 113 LLAEMIGKADLGPFRRMLDLGCGTGLTGEALRDMADRLTGVDISENMLAKAHEKGLYD------TLYVAEAVLFLEDLTQ 186 (287)
T ss_pred HHHHHHHhccCCccceeeecccCcCcccHhHHHHHhhccCCchhHHHHHHHHhccchH------HHHHHHHHHHhhhccC
Confidence 3455555443333 79999999999999999887789999999999999998753211 233444333 2345
Q ss_pred CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+.||+|.+..|+.++ -.+..++......|+|||.+.++.=..
T Consensus 187 er~DLi~AaDVl~Yl--G~Le~~~~~aa~~L~~gGlfaFSvE~l 228 (287)
T COG4976 187 ERFDLIVAADVLPYL--GALEGLFAGAAGLLAPGGLFAFSVETL 228 (287)
T ss_pred CcccchhhhhHHHhh--cchhhHHHHHHHhcCCCceEEEEeccc
Confidence 689999999999998 566788999999999999987765443
No 159
>COG2263 Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=99.15 E-value=4.2e-10 Score=84.56 Aligned_cols=77 Identities=25% Similarity=0.237 Sum_probs=65.6
Q ss_pred CCCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903 105 GALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 105 ~~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~ 183 (231)
..+.+..|+|+|||+|.+++..+-.|. .|+++|+++++++.+++|..+ +..++.|+.+|+.+.. ..+|.++.+..
T Consensus 42 g~l~g~~V~DlG~GTG~La~ga~~lGa~~V~~vdiD~~a~ei~r~N~~~--l~g~v~f~~~dv~~~~--~~~dtvimNPP 117 (198)
T COG2263 42 GDLEGKTVLDLGAGTGILAIGAALLGASRVLAVDIDPEALEIARANAEE--LLGDVEFVVADVSDFR--GKFDTVIMNPP 117 (198)
T ss_pred CCcCCCEEEEcCCCcCHHHHHHHhcCCcEEEEEecCHHHHHHHHHHHHh--hCCceEEEEcchhhcC--CccceEEECCC
Confidence 356677899999999999999999886 999999999999999999987 3467999999999865 46788887755
Q ss_pred cc
Q 026903 184 FC 185 (231)
Q Consensus 184 ~~ 185 (231)
|.
T Consensus 118 FG 119 (198)
T COG2263 118 FG 119 (198)
T ss_pred Cc
Confidence 43
No 160
>COG1041 Predicted DNA modification methylase [DNA replication, recombination, and repair]
Probab=99.14 E-value=9.1e-10 Score=90.57 Aligned_cols=122 Identities=18% Similarity=0.144 Sum_probs=95.3
Q ss_pred CCCcHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCC
Q 026903 92 GQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT 168 (231)
Q Consensus 92 ~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~ 168 (231)
....|.+.+.+-+. ..++..|||..||||.++....-.|.+++|+|++.+++.-|+.|+..++..+ ..+... |+..
T Consensus 179 ~s~~P~lAR~mVNLa~v~~G~~vlDPFcGTGgiLiEagl~G~~viG~Did~~mv~gak~Nl~~y~i~~-~~~~~~~Da~~ 257 (347)
T COG1041 179 GSMDPRLARAMVNLARVKRGELVLDPFCGTGGILIEAGLMGARVIGSDIDERMVRGAKINLEYYGIED-YPVLKVLDATN 257 (347)
T ss_pred CCcCHHHHHHHHHHhccccCCEeecCcCCccHHHHhhhhcCceEeecchHHHHHhhhhhhhhhhCcCc-eeEEEeccccc
Confidence 33467777766655 3456799999999999999999999999999999999999999998876543 444554 8888
Q ss_pred -CCCCCceeEEEeCCcccccC-------hHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 169 -WCPTELFDLIFDYTFFCAIE-------PEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 169 -~~~~~~fD~i~~~~~~~~~~-------~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
+++..++|.|++-..+.--+ ++...++++.+.++|++||++++...
T Consensus 258 lpl~~~~vdaIatDPPYGrst~~~~~~l~~Ly~~~le~~~evLk~gG~~vf~~p 311 (347)
T COG1041 258 LPLRDNSVDAIATDPPYGRSTKIKGEGLDELYEEALESASEVLKPGGRIVFAAP 311 (347)
T ss_pred CCCCCCccceEEecCCCCcccccccccHHHHHHHHHHHHHHHhhcCcEEEEecC
Confidence 55555799999865443221 24568899999999999998877554
No 161
>PRK03612 spermidine synthase; Provisional
Probab=99.14 E-value=3e-10 Score=100.49 Aligned_cols=106 Identities=22% Similarity=0.262 Sum_probs=80.1
Q ss_pred CCCcEEEecCCCchHHHHhcCC-C-CeEEEEeCChHHHHHHHHHh--ccC---C-CCCceEEEEccCCCCC--CCCceeE
Q 026903 108 PKGRALVPGCGTGYDVVAMASP-E-RYVVGLEISDIAIKKAEELS--SSL---P-NAKFVSFLKADFFTWC--PTELFDL 177 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~-~-~~v~~iD~s~~~i~~a~~~~--~~~---~-~~~~i~~~~~d~~~~~--~~~~fD~ 177 (231)
++++|||+|||+|..+..+++. + .+++++|+++++++.++++. ... . .+++++++.+|..+.. ..++||+
T Consensus 297 ~~~rVL~IG~G~G~~~~~ll~~~~v~~v~~VEid~~vi~~ar~~~~l~~~~~~~~~dprv~vi~~Da~~~l~~~~~~fDv 376 (521)
T PRK03612 297 RPRRVLVLGGGDGLALREVLKYPDVEQVTLVDLDPAMTELARTSPALRALNGGALDDPRVTVVNDDAFNWLRKLAEKFDV 376 (521)
T ss_pred CCCeEEEEcCCccHHHHHHHhCCCcCeEEEEECCHHHHHHHHhCCcchhhhccccCCCceEEEEChHHHHHHhCCCCCCE
Confidence 4579999999999999998884 3 59999999999999999842 211 1 1358999999998832 3468999
Q ss_pred EEeCCcccccCh---HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 178 IFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 178 i~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
|++.......+. -...++++.+.+.|+|||++++..
T Consensus 377 Ii~D~~~~~~~~~~~L~t~ef~~~~~~~L~pgG~lv~~~ 415 (521)
T PRK03612 377 IIVDLPDPSNPALGKLYSVEFYRLLKRRLAPDGLLVVQS 415 (521)
T ss_pred EEEeCCCCCCcchhccchHHHHHHHHHhcCCCeEEEEec
Confidence 998754332211 112468899999999999987754
No 162
>PF05185 PRMT5: PRMT5 arginine-N-methyltransferase; InterPro: IPR007857 The human homologue of Saccharomyces cerevisiae Skb1 (Shk1 kinase-binding protein 1) is a protein methyltransferase []. These proteins seem to play a role in Jak signalling.; GO: 0008168 methyltransferase activity, 0005737 cytoplasm; PDB: 2Y1W_C 2Y1X_D 2V7E_B 2V74_H 3R0Q_G 3B3F_B 3B3J_A 3B3G_A 3UA3_A 3UA4_B ....
Probab=99.13 E-value=2.5e-10 Score=98.61 Aligned_cols=102 Identities=20% Similarity=0.153 Sum_probs=78.5
Q ss_pred CCcEEEecCCCchHHHHhcCCC------CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903 109 KGRALVPGCGTGYDVVAMASPE------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~------~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~ 182 (231)
+..|+|+|||+|-++...++.+ .+|+++|-++.++...++++..+++.++|+++++|+++...+..+|+|++-.
T Consensus 187 ~~vVldVGAGrGpL~~~al~A~~~~~~a~~VyAVEkn~~A~~~l~~~v~~n~w~~~V~vi~~d~r~v~lpekvDIIVSEl 266 (448)
T PF05185_consen 187 DKVVLDVGAGRGPLSMFALQAGARAGGAVKVYAVEKNPNAVVTLQKRVNANGWGDKVTVIHGDMREVELPEKVDIIVSEL 266 (448)
T ss_dssp T-EEEEES-TTSHHHHHHHHTTHHHCCESEEEEEESSTHHHHHHHHHHHHTTTTTTEEEEES-TTTSCHSS-EEEEEE--
T ss_pred ceEEEEeCCCccHHHHHHHHHHHHhCCCeEEEEEcCCHhHHHHHHHHHHhcCCCCeEEEEeCcccCCCCCCceeEEEEec
Confidence 4689999999999987776643 4999999999999888887677777789999999999987777999999865
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 210 (231)
.-.....+.....|....+.|||||+++
T Consensus 267 LGsfg~nEl~pE~Lda~~rfLkp~Gi~I 294 (448)
T PF05185_consen 267 LGSFGDNELSPECLDAADRFLKPDGIMI 294 (448)
T ss_dssp -BTTBTTTSHHHHHHHGGGGEEEEEEEE
T ss_pred cCCccccccCHHHHHHHHhhcCCCCEEe
Confidence 5433444555667888889999999875
No 163
>PF02475 Met_10: Met-10+ like-protein; InterPro: IPR003402 This entry represents the Trm5 family. Trm5 specifically methylates the N1 position of guanosine-37 in various tRNAs [, , ]. Another members of this family, tRNA wybutosine-synthesizing protein 2 (Tyw2) and its homologues, are S-adenosyl-L-methionine-dependent transferases that act as a component of the wybutosine biosynthesis pathway [, ]. tRNA wybutosine-synthesizing protein 2 was originally thought to be a methyltransferase [].; GO: 0016740 transferase activity; PDB: 3A27_A 2ZZN_B 2YX1_A 2ZZM_A 3AY0_B 3K6R_A 3A26_A 3A25_A.
Probab=99.12 E-value=4e-10 Score=87.13 Aligned_cols=106 Identities=14% Similarity=0.099 Sum_probs=77.6
Q ss_pred HHHHHHcCCCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCce
Q 026903 98 IVHLHQSGALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELF 175 (231)
Q Consensus 98 ~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~f 175 (231)
-.++... ..++..|+|+.||-|.+++.+++ .+..|+++|++|.+++.+++++..+++.+++..+++|..+..+...|
T Consensus 92 r~Ri~~~-v~~~e~VlD~faGIG~f~l~~ak~~~~~~V~A~d~Np~a~~~L~~Ni~lNkv~~~i~~~~~D~~~~~~~~~~ 170 (200)
T PF02475_consen 92 RRRIANL-VKPGEVVLDMFAGIGPFSLPIAKHGKAKRVYAVDLNPDAVEYLKENIRLNKVENRIEVINGDAREFLPEGKF 170 (200)
T ss_dssp HHHHHTC---TT-EEEETT-TTTTTHHHHHHHT-SSEEEEEES-HHHHHHHHHHHHHTT-TTTEEEEES-GGG---TT-E
T ss_pred HHHHHhc-CCcceEEEEccCCccHHHHHHhhhcCccEEEEecCCHHHHHHHHHHHHHcCCCCeEEEEcCCHHHhcCcccc
Confidence 3444443 45678999999999999999998 77799999999999999999999998888899999999997667899
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 210 (231)
|-|++...-.. ..+|..+..++++||++.
T Consensus 171 drvim~lp~~~------~~fl~~~~~~~~~~g~ih 199 (200)
T PF02475_consen 171 DRVIMNLPESS------LEFLDAALSLLKEGGIIH 199 (200)
T ss_dssp EEEEE--TSSG------GGGHHHHHHHEEEEEEEE
T ss_pred CEEEECChHHH------HHHHHHHHHHhcCCcEEE
Confidence 99986443211 247888999999999774
No 164
>COG3963 Phospholipid N-methyltransferase [Lipid metabolism]
Probab=99.11 E-value=2.6e-09 Score=78.53 Aligned_cols=115 Identities=17% Similarity=0.113 Sum_probs=94.6
Q ss_pred HHHHHHcCCCC-CCcEEEecCCCchHHHHhcCCCC---eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---
Q 026903 98 IVHLHQSGALP-KGRALVPGCGTGYDVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--- 170 (231)
Q Consensus 98 ~~~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~~~~---~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 170 (231)
.+.+....... +.-|||+|.|+|.++..++++|. .++++|+|+..+....+... .+.++.+|.++..
T Consensus 37 A~~M~s~I~pesglpVlElGPGTGV~TkaIL~~gv~~~~L~~iE~~~dF~~~L~~~~p------~~~ii~gda~~l~~~l 110 (194)
T COG3963 37 ARKMASVIDPESGLPVLELGPGTGVITKAILSRGVRPESLTAIEYSPDFVCHLNQLYP------GVNIINGDAFDLRTTL 110 (194)
T ss_pred HHHHHhccCcccCCeeEEEcCCccHhHHHHHhcCCCccceEEEEeCHHHHHHHHHhCC------CccccccchhhHHHHH
Confidence 34444443333 46999999999999999999664 79999999999999888763 3668999988832
Q ss_pred ---CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 171 ---PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 171 ---~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
....||.|+|...+-.+|...+.++|+.+...|.+||.|+..+|.+-.
T Consensus 111 ~e~~gq~~D~viS~lPll~~P~~~~iaile~~~~rl~~gg~lvqftYgp~s 161 (194)
T COG3963 111 GEHKGQFFDSVISGLPLLNFPMHRRIAILESLLYRLPAGGPLVQFTYGPLS 161 (194)
T ss_pred hhcCCCeeeeEEeccccccCcHHHHHHHHHHHHHhcCCCCeEEEEEecCCC
Confidence 345799999998888888888999999999999999999999998543
No 165
>PRK11727 23S rRNA mA1618 methyltransferase; Provisional
Probab=99.10 E-value=8.6e-10 Score=91.17 Aligned_cols=79 Identities=20% Similarity=0.092 Sum_probs=62.6
Q ss_pred CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEE-ccCCC---C--CCCCceeEEE
Q 026903 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLK-ADFFT---W--CPTELFDLIF 179 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~-~d~~~---~--~~~~~fD~i~ 179 (231)
+.++||||||+|.....++. .+.+++|+|+++.+++.|++++..+ ++.++|++.. .+..+ . .+.+.||+|+
T Consensus 115 ~~~vLDIGtGag~I~~lLa~~~~~~~~~atDId~~Al~~A~~Nv~~Np~l~~~I~~~~~~~~~~i~~~i~~~~~~fDliv 194 (321)
T PRK11727 115 NVRVLDIGVGANCIYPLIGVHEYGWRFVGSDIDPQALASAQAIISANPGLNGAIRLRLQKDSKAIFKGIIHKNERFDATL 194 (321)
T ss_pred CceEEEecCCccHHHHHHHhhCCCCEEEEEeCCHHHHHHHHHHHHhccCCcCcEEEEEccchhhhhhcccccCCceEEEE
Confidence 47999999999977777665 5779999999999999999999988 5777888864 33322 1 2356899999
Q ss_pred eCCccccc
Q 026903 180 DYTFFCAI 187 (231)
Q Consensus 180 ~~~~~~~~ 187 (231)
|+..|+--
T Consensus 195 cNPPf~~s 202 (321)
T PRK11727 195 CNPPFHAS 202 (321)
T ss_pred eCCCCcCc
Confidence 99887643
No 166
>PF03602 Cons_hypoth95: Conserved hypothetical protein 95; InterPro: IPR004398 This entry contains Ribosomal RNA small subunit methyltransferase D as well as the putative rRNA methyltransferase YlbH. They methylate the guanosine in position 966 of 16S rRNA in the assembled 30S particle [].; GO: 0008168 methyltransferase activity, 0031167 rRNA methylation; PDB: 3P9N_A 2ESR_B 2IFT_A 1WS6_A 2FPO_B 2FHP_A.
Probab=99.09 E-value=2.7e-10 Score=87.23 Aligned_cols=108 Identities=23% Similarity=0.171 Sum_probs=80.4
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEe
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~ 180 (231)
.++.++||+.||+|..++..+++|+ +|+.+|.+++++...++|+...+..+++.++..|..... ....||+|+.
T Consensus 41 ~~g~~vLDLFaGSGalGlEALSRGA~~v~fVE~~~~a~~~i~~N~~~l~~~~~~~v~~~d~~~~l~~~~~~~~~fDiIfl 120 (183)
T PF03602_consen 41 LEGARVLDLFAGSGALGLEALSRGAKSVVFVEKNRKAIKIIKKNLEKLGLEDKIRVIKGDAFKFLLKLAKKGEKFDIIFL 120 (183)
T ss_dssp HTT-EEEETT-TTSHHHHHHHHTT-SEEEEEES-HHHHHHHHHHHHHHT-GGGEEEEESSHHHHHHHHHHCTS-EEEEEE
T ss_pred cCCCeEEEcCCccCccHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHhCCCcceeeeccCHHHHHHhhcccCCCceEEEE
Confidence 5678999999999999999999997 999999999999999999988777677999999977622 4578999997
Q ss_pred CCcccccChHHHHHHHHHHH--hhcCCCcEEEEEEccC
Q 026903 181 YTFFCAIEPEMRAAWAQKIK--DFLKPDGELITLMFPI 216 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~--~~L~pgG~l~~~~~~~ 216 (231)
...+..- .....++..+. ..|+++|.+++.+...
T Consensus 121 DPPY~~~--~~~~~~l~~l~~~~~l~~~~~ii~E~~~~ 156 (183)
T PF03602_consen 121 DPPYAKG--LYYEELLELLAENNLLNEDGLIIIEHSKK 156 (183)
T ss_dssp --STTSC--HHHHHHHHHHHHTTSEEEEEEEEEEEETT
T ss_pred CCCcccc--hHHHHHHHHHHHCCCCCCCEEEEEEecCC
Confidence 6554432 11366777776 7899999886655444
No 167
>COG1092 Predicted SAM-dependent methyltransferases [General function prediction only]
Probab=99.09 E-value=7.1e-10 Score=93.64 Aligned_cols=107 Identities=24% Similarity=0.180 Sum_probs=87.9
Q ss_pred CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC-----CCCceeEEEe
Q 026903 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC-----PTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~-----~~~~fD~i~~ 180 (231)
.+++|||+.|=||.++...+..|+ +|+++|.|..+++.|++|+..+++. +++.|+++|++++. ...+||+|+.
T Consensus 217 ~GkrvLNlFsYTGgfSv~Aa~gGA~~vt~VD~S~~al~~a~~N~~LNg~~~~~~~~i~~Dvf~~l~~~~~~g~~fDlIil 296 (393)
T COG1092 217 AGKRVLNLFSYTGGFSVHAALGGASEVTSVDLSKRALEWARENAELNGLDGDRHRFIVGDVFKWLRKAERRGEKFDLIIL 296 (393)
T ss_pred cCCeEEEecccCcHHHHHHHhcCCCceEEEeccHHHHHHHHHHHHhcCCCccceeeehhhHHHHHHHHHhcCCcccEEEE
Confidence 378999999999999999999998 9999999999999999999988864 56899999999943 2348999996
Q ss_pred CCc-ccccC------hHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 181 YTF-FCAIE------PEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 181 ~~~-~~~~~------~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
-.. |..-. ..+..+++..+.+.|+|||.+++++-
T Consensus 297 DPPsF~r~k~~~~~~~rdy~~l~~~~~~iL~pgG~l~~~s~ 337 (393)
T COG1092 297 DPPSFARSKKQEFSAQRDYKDLNDLALRLLAPGGTLVTSSC 337 (393)
T ss_pred CCcccccCcccchhHHHHHHHHHHHHHHHcCCCCEEEEEec
Confidence 422 21110 13557889999999999999988663
No 168
>PF08704 GCD14: tRNA methyltransferase complex GCD14 subunit; InterPro: IPR014816 GCD14 is a subunit of the tRNA methyltransferase complex and is required for 1-methyladenosine modification and maturation of initiator methionyl-tRNA []. ; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity, 0030488 tRNA methylation; PDB: 2YVL_C 1YB2_A 2B25_B 1O54_A 2PWY_B 1I9G_A 3LGA_B 3LHD_C 3MB5_A.
Probab=99.09 E-value=4e-10 Score=89.79 Aligned_cols=108 Identities=22% Similarity=0.150 Sum_probs=80.2
Q ss_pred HHHHHHcC-CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCC-
Q 026903 98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCP- 171 (231)
Q Consensus 98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~- 171 (231)
+..++... ..|+.+|||.|.|+|.++..|++ +..+|+..|+.++.++.|++++...++.+++++.+.|+.+ -+.
T Consensus 29 ~~~I~~~l~i~pG~~VlEaGtGSG~lt~~l~r~v~p~G~v~t~E~~~~~~~~A~~n~~~~gl~~~v~~~~~Dv~~~g~~~ 108 (247)
T PF08704_consen 29 ISYILMRLDIRPGSRVLEAGTGSGSLTHALARAVGPTGHVYTYEFREDRAEKARKNFERHGLDDNVTVHHRDVCEEGFDE 108 (247)
T ss_dssp HHHHHHHTT--TT-EEEEE--TTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHTTCCTTEEEEES-GGCG--ST
T ss_pred HHHHHHHcCCCCCCEEEEecCCcHHHHHHHHHHhCCCeEEEccccCHHHHHHHHHHHHHcCCCCCceeEecceecccccc
Confidence 44444444 45678999999999999999997 5569999999999999999999999888899999999975 332
Q ss_pred --CCceeEEEeCCcccccChHHHHHHHHHHHhhc-CCCcEEEEE
Q 026903 172 --TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITL 212 (231)
Q Consensus 172 --~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~ 212 (231)
+..+|.|+.-.. +.-.++..+.++| ++||++++.
T Consensus 109 ~~~~~~DavfLDlp-------~Pw~~i~~~~~~L~~~gG~i~~f 145 (247)
T PF08704_consen 109 ELESDFDAVFLDLP-------DPWEAIPHAKRALKKPGGRICCF 145 (247)
T ss_dssp T-TTSEEEEEEESS-------SGGGGHHHHHHHE-EEEEEEEEE
T ss_pred cccCcccEEEEeCC-------CHHHHHHHHHHHHhcCCceEEEE
Confidence 357999994322 2234678899999 899988654
No 169
>KOG1500 consensus Protein arginine N-methyltransferase CARM1 [Posttranslational modification, protein turnover, chaperones; Transcription]
Probab=99.08 E-value=1.2e-09 Score=88.69 Aligned_cols=103 Identities=18% Similarity=0.216 Sum_probs=82.1
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~ 184 (231)
...++.|||+|||+|.++.+.+..|+ +|+++|- .++.++|++....+.+.++|.++.+-+++...++..|+|++-..-
T Consensus 175 DF~~kiVlDVGaGSGILS~FAaqAGA~~vYAvEA-S~MAqyA~~Lv~~N~~~~rItVI~GKiEdieLPEk~DviISEPMG 253 (517)
T KOG1500|consen 175 DFQDKIVLDVGAGSGILSFFAAQAGAKKVYAVEA-SEMAQYARKLVASNNLADRITVIPGKIEDIELPEKVDVIISEPMG 253 (517)
T ss_pred ccCCcEEEEecCCccHHHHHHHHhCcceEEEEeh-hHHHHHHHHHHhcCCccceEEEccCccccccCchhccEEEeccch
Confidence 45678999999999999999999887 8999998 467899999998888889999999999997666789999986442
Q ss_pred c-ccChHHHHHHHHHHHhhcCCCcEEE
Q 026903 185 C-AIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 185 ~-~~~~~~~~~~l~~~~~~L~pgG~l~ 210 (231)
. .+....++.++. .++.|+|.|..+
T Consensus 254 ~mL~NERMLEsYl~-Ark~l~P~GkMf 279 (517)
T KOG1500|consen 254 YMLVNERMLESYLH-ARKWLKPNGKMF 279 (517)
T ss_pred hhhhhHHHHHHHHH-HHhhcCCCCccc
Confidence 2 233233344433 448999999763
No 170
>PRK04148 hypothetical protein; Provisional
Probab=99.05 E-value=6.2e-09 Score=74.85 Aligned_cols=96 Identities=16% Similarity=0.173 Sum_probs=72.0
Q ss_pred CCCcEEEecCCCch-HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCCcc
Q 026903 108 PKGRALVPGCGTGY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~G~-~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~i~~~~~~ 184 (231)
++.+|||+|||.|. ++..|++.|..|+++|+++.+++.++++. ++++.+|++++... ..+|+|++...
T Consensus 16 ~~~kileIG~GfG~~vA~~L~~~G~~ViaIDi~~~aV~~a~~~~--------~~~v~dDlf~p~~~~y~~a~liysirp- 86 (134)
T PRK04148 16 KNKKIVELGIGFYFKVAKKLKESGFDVIVIDINEKAVEKAKKLG--------LNAFVDDLFNPNLEIYKNAKLIYSIRP- 86 (134)
T ss_pred cCCEEEEEEecCCHHHHHHHHHCCCEEEEEECCHHHHHHHHHhC--------CeEEECcCCCCCHHHHhcCCEEEEeCC-
Confidence 34789999999996 88899999999999999999999998763 68999999996543 57999996432
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
+.+....+.++++. -|.-|++...+.+.
T Consensus 87 ----p~el~~~~~~la~~--~~~~~~i~~l~~e~ 114 (134)
T PRK04148 87 ----PRDLQPFILELAKK--INVPLIIKPLSGEE 114 (134)
T ss_pred ----CHHHHHHHHHHHHH--cCCCEEEEcCCCCC
Confidence 23333444445443 35567777776654
No 171
>PF12147 Methyltransf_20: Putative methyltransferase; InterPro: IPR022744 This C-terminal region is found in bacteria and eukaryotes and is approximately 110 amino acids in length. It is found in association with PF00561 from PFAM. Many members are annotated as being lysophospholipases, and others as alpha-beta hydrolase fold-containing proteins. This domain belongs to the S-adenosyl-L-methionine-dependent methyltransferases superfamily.
Probab=99.05 E-value=4e-09 Score=84.45 Aligned_cols=110 Identities=18% Similarity=0.137 Sum_probs=92.1
Q ss_pred CCCcEEEecCCCchHHHHhcC--CC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--C--CCceeEEE
Q 026903 108 PKGRALVPGCGTGYDVVAMAS--PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--P--TELFDLIF 179 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~--~~~fD~i~ 179 (231)
.+-+||||.||.|+..+..+. +. ..+...|+++..++..++...+.++.+-++|.++|+++.. . .-..++++
T Consensus 135 ~pvrIlDIAaG~GRYvlDal~~~~~~~~~i~LrDys~~Nv~~g~~li~~~gL~~i~~f~~~dAfd~~~l~~l~p~P~l~i 214 (311)
T PF12147_consen 135 RPVRILDIAAGHGRYVLDALEKHPERPDSILLRDYSPINVEKGRALIAERGLEDIARFEQGDAFDRDSLAALDPAPTLAI 214 (311)
T ss_pred CceEEEEeccCCcHHHHHHHHhCCCCCceEEEEeCCHHHHHHHHHHHHHcCCccceEEEecCCCCHhHhhccCCCCCEEE
Confidence 346999999999999988876 22 4899999999999999999999888877799999999931 1 23579999
Q ss_pred eCCcccccChHH-HHHHHHHHHhhcCCCcEEEEEE--ccCC
Q 026903 180 DYTFFCAIEPEM-RAAWAQKIKDFLKPDGELITLM--FPIS 217 (231)
Q Consensus 180 ~~~~~~~~~~~~-~~~~l~~~~~~L~pgG~l~~~~--~~~~ 217 (231)
.+..++.+++.+ ....+..+.+++.|||+|+... |.|.
T Consensus 215 VsGL~ElF~Dn~lv~~sl~gl~~al~pgG~lIyTgQPwHPQ 255 (311)
T PF12147_consen 215 VSGLYELFPDNDLVRRSLAGLARALEPGGYLIYTGQPWHPQ 255 (311)
T ss_pred EecchhhCCcHHHHHHHHHHHHHHhCCCcEEEEcCCCCCcc
Confidence 999999998855 5668999999999999998876 5554
No 172
>KOG3178 consensus Hydroxyindole-O-methyltransferase and related SAM-dependent methyltransferases [General function prediction only]
Probab=99.05 E-value=1.6e-09 Score=88.80 Aligned_cols=100 Identities=19% Similarity=0.147 Sum_probs=87.5
Q ss_pred CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccCh
Q 026903 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP 189 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~ 189 (231)
...+|+|.|.|+.+..++..-.++-+++++...+..+.+... .+ |+.+.+|.+.-.|. -|+|++.+++||+++
T Consensus 179 ~~avDvGgGiG~v~k~ll~~fp~ik~infdlp~v~~~a~~~~-~g----V~~v~gdmfq~~P~--~daI~mkWiLhdwtD 251 (342)
T KOG3178|consen 179 NVAVDVGGGIGRVLKNLLSKYPHIKGINFDLPFVLAAAPYLA-PG----VEHVAGDMFQDTPK--GDAIWMKWILHDWTD 251 (342)
T ss_pred ceEEEcCCcHhHHHHHHHHhCCCCceeecCHHHHHhhhhhhc-CC----cceecccccccCCC--cCeEEEEeecccCCh
Confidence 699999999999999999855579999999888888877764 32 88889999986554 469999999999999
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 190 EMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 190 ~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
++..++|++|...|+|||.+++.+...
T Consensus 252 edcvkiLknC~~sL~~~GkIiv~E~V~ 278 (342)
T KOG3178|consen 252 EDCVKILKNCKKSLPPGGKIIVVENVT 278 (342)
T ss_pred HHHHHHHHHHHHhCCCCCEEEEEeccC
Confidence 999999999999999999999988843
No 173
>TIGR00479 rumA 23S rRNA (uracil-5-)-methyltransferase RumA. This protein family was first proposed to be RNA methyltransferases by homology to the TrmA family. The member from E. coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA.
Probab=99.03 E-value=2.1e-09 Score=93.34 Aligned_cols=101 Identities=20% Similarity=0.163 Sum_probs=77.8
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeCC
Q 026903 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT 182 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~~~ 182 (231)
++.+|||+|||+|.++..+++.+.+|+++|+++.+++.|++++..++. .+++|+.+|+.+.. ....||+|+...
T Consensus 292 ~~~~vLDl~cG~G~~sl~la~~~~~V~~vE~~~~av~~a~~n~~~~~~-~nv~~~~~d~~~~l~~~~~~~~~~D~vi~dP 370 (431)
T TIGR00479 292 GEELVVDAYCGVGTFTLPLAKQAKSVVGIEVVPESVEKAQQNAELNGI-ANVEFLAGTLETVLPKQPWAGQIPDVLLLDP 370 (431)
T ss_pred CCCEEEEcCCCcCHHHHHHHHhCCEEEEEEcCHHHHHHHHHHHHHhCC-CceEEEeCCHHHHHHHHHhcCCCCCEEEECc
Confidence 347999999999999999999878999999999999999999877664 47999999987632 234799999544
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.-.-+. ..+++.+. .++|++.+|+.+-
T Consensus 371 Pr~G~~----~~~l~~l~-~l~~~~ivyvsc~ 397 (431)
T TIGR00479 371 PRKGCA----AEVLRTII-ELKPERIVYVSCN 397 (431)
T ss_pred CCCCCC----HHHHHHHH-hcCCCEEEEEcCC
Confidence 322221 34555554 3789998887653
No 174
>PF10672 Methyltrans_SAM: S-adenosylmethionine-dependent methyltransferase; InterPro: IPR019614 Members of this entry are S-adenosylmethionine-dependent methyltransferases from gamma-proteobacterial species. The diversity in the roles of methylation is matched by the almost bewildering number of methyltransferase enzymes that catalyse the methylation reaction. Although several classes of methyltransferase enzymes are known, the great majority of methylation reactions are catalysed by the S-adenosylmethionine-dependent methyltransferases. SAM (S-adenosylmethionine, also known as AdoMet) is well known as the methyl donor for the majority of methyltransferases that modify DNA, RNA, histones and other proteins, dictating replicational, transcriptional and translational fidelity, mismatch repair, chromatin modelling, epigenetic modifications and imprinting [].; GO: 0008168 methyltransferase activity; PDB: 2IGT_B 1WXX_A 1WXW_D 2CWW_B 2AS0_B 3V8V_B 3V97_A 3C0K_A 2B78_A 3LDF_A.
Probab=99.02 E-value=7.7e-10 Score=89.95 Aligned_cols=110 Identities=25% Similarity=0.183 Sum_probs=82.4
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCCCC----CCCceeEEEe
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFTWC----PTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~~~----~~~~fD~i~~ 180 (231)
..+++|||+.|=+|.++...+..|+ +|+.+|.|..+++.+++|+..+++. .+++|++.|+++.. ..++||+|++
T Consensus 122 ~~gkrvLnlFsYTGgfsv~Aa~gGA~~v~~VD~S~~al~~a~~N~~lNg~~~~~~~~~~~Dvf~~l~~~~~~~~fD~IIl 201 (286)
T PF10672_consen 122 AKGKRVLNLFSYTGGFSVAAAAGGAKEVVSVDSSKRALEWAKENAALNGLDLDRHRFIQGDVFKFLKRLKKGGRFDLIIL 201 (286)
T ss_dssp CTTCEEEEET-TTTHHHHHHHHTTESEEEEEES-HHHHHHHHHHHHHTT-CCTCEEEEES-HHHHHHHHHHTT-EEEEEE
T ss_pred cCCCceEEecCCCCHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHcCCCccceEEEecCHHHHHHHHhcCCCCCEEEE
Confidence 3468999999999999999988887 8999999999999999999988765 57999999998832 3468999997
Q ss_pred CCc-ccc--cC-hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 181 YTF-FCA--IE-PEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 181 ~~~-~~~--~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
-.. |.. .. ..+..+++..+.++|+|||.|+++.-++
T Consensus 202 DPPsF~k~~~~~~~~y~~L~~~a~~ll~~gG~l~~~scs~ 241 (286)
T PF10672_consen 202 DPPSFAKSKFDLERDYKKLLRRAMKLLKPGGLLLTCSCSH 241 (286)
T ss_dssp --SSEESSTCEHHHHHHHHHHHHHHTEEEEEEEEEEE--T
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEcCCc
Confidence 532 211 00 1456788999999999999988766544
No 175
>PF05148 Methyltransf_8: Hypothetical methyltransferase; InterPro: IPR007823 This family consists of uncharacterised eukaryotic proteins which are related to S-adenosyl-L-methionine-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2ZFU_B.
Probab=99.00 E-value=1.1e-09 Score=83.93 Aligned_cols=116 Identities=14% Similarity=0.138 Sum_probs=71.0
Q ss_pred hhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCc
Q 026903 79 EKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF 158 (231)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~ 158 (231)
++-|......|. ..|...+.+++.. ..+...|-|+|||.+.++..+ ..+..|...|+.+. +
T Consensus 45 H~Gfr~Qv~~WP-~nPvd~iI~~l~~-~~~~~viaD~GCGdA~la~~~-~~~~~V~SfDLva~----------------n 105 (219)
T PF05148_consen 45 HEGFRQQVKKWP-VNPVDVIIEWLKK-RPKSLVIADFGCGDAKLAKAV-PNKHKVHSFDLVAP----------------N 105 (219)
T ss_dssp HHHHHHHHCTSS-S-HHHHHHHHHCT-S-TTS-EEEES-TT-HHHHH---S---EEEEESS-S----------------S
T ss_pred HHHHHHHHhcCC-CCcHHHHHHHHHh-cCCCEEEEECCCchHHHHHhc-ccCceEEEeeccCC----------------C
Confidence 444444555665 3344444555543 223479999999999999765 35678999999442 2
Q ss_pred eEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 159 VSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 159 i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
-.+..+|+.+ |.++++.|++++...+.. ++...++.+..|+|||||.|.|.+...
T Consensus 106 ~~Vtacdia~vPL~~~svDv~VfcLSLMG---Tn~~~fi~EA~RvLK~~G~L~IAEV~S 161 (219)
T PF05148_consen 106 PRVTACDIANVPLEDESVDVAVFCLSLMG---TNWPDFIREANRVLKPGGILKIAEVKS 161 (219)
T ss_dssp TTEEES-TTS-S--TT-EEEEEEES---S---S-HHHHHHHHHHHEEEEEEEEEEEEGG
T ss_pred CCEEEecCccCcCCCCceeEEEEEhhhhC---CCcHHHHHHHHheeccCcEEEEEEecc
Confidence 3467899988 778889999997766654 466789999999999999999988643
No 176
>COG2520 Predicted methyltransferase [General function prediction only]
Probab=98.99 E-value=4.1e-09 Score=87.32 Aligned_cols=114 Identities=17% Similarity=0.044 Sum_probs=95.1
Q ss_pred HHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-Ccee
Q 026903 99 VHLHQSGALPKGRALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFD 176 (231)
Q Consensus 99 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD 176 (231)
.+++.. ..++..|+|..+|-|.+++.+|+.|.. |+++|++|.+++++++|+..+++.+.+..+++|..+..+. +.+|
T Consensus 180 ~Rva~~-v~~GE~V~DmFAGVGpfsi~~Ak~g~~~V~A~diNP~A~~~L~eNi~LN~v~~~v~~i~gD~rev~~~~~~aD 258 (341)
T COG2520 180 ARVAEL-VKEGETVLDMFAGVGPFSIPIAKKGRPKVYAIDINPDAVEYLKENIRLNKVEGRVEPILGDAREVAPELGVAD 258 (341)
T ss_pred HHHHhh-hcCCCEEEEccCCcccchhhhhhcCCceEEEEecCHHHHHHHHHHHHhcCccceeeEEeccHHHhhhccccCC
Confidence 334433 345789999999999999999998874 9999999999999999999998888899999999996655 7899
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 219 (231)
-|+..... ....++....+.+++||.+.+.++.++..
T Consensus 259 rIim~~p~------~a~~fl~~A~~~~k~~g~iHyy~~~~e~~ 295 (341)
T COG2520 259 RIIMGLPK------SAHEFLPLALELLKDGGIIHYYEFVPEDD 295 (341)
T ss_pred EEEeCCCC------cchhhHHHHHHHhhcCcEEEEEeccchhh
Confidence 99954432 22457888889999999999999988765
No 177
>PF09445 Methyltransf_15: RNA cap guanine-N2 methyltransferase; InterPro: IPR019012 RNA cap guanine-N2 methyltransferases such as Schizosaccharomyces pombe (Fission yeast) trimethylguanosine synthase (Tgs1) and Giardia lamblia (Giardia intestinalis) Tgs2, catalyse the methylation step(s) for the conversion of the 7-monomethylguanosine (m(7)G) caps of snRNAs and snoRNAs to a 2,2,7-trimethylguanosine (m(2,2,7)G) cap structure [, , ]. Trimethylguanosine synthase is specific for guanine, and N7 methylation must precede N2 methylation. This enzyme is required for pre-mRNA splicing, pre-rRNA processing and small ribosomal subunit synthesis. As such, this enzyme plays a role in transcriptional regulation. ; GO: 0008168 methyltransferase activity, 0001510 RNA methylation, 0009452 RNA capping; PDB: 3EGI_B 3GDH_A.
Probab=98.99 E-value=4.5e-10 Score=83.63 Aligned_cols=72 Identities=22% Similarity=0.352 Sum_probs=57.7
Q ss_pred cEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC----ceeEEEeCC
Q 026903 111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE----LFDLIFDYT 182 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~----~fD~i~~~~ 182 (231)
.|+|+.||.|.++..+|+.+.+|+++|+++..++.|+.|+.-+++.++|+|+++|+.+..+.. .+|+|+++.
T Consensus 2 ~vlD~fcG~GGNtIqFA~~~~~Viaidid~~~~~~a~hNa~vYGv~~~I~~i~gD~~~~~~~~~~~~~~D~vFlSP 77 (163)
T PF09445_consen 2 TVLDAFCGVGGNTIQFARTFDRVIAIDIDPERLECAKHNAEVYGVADNIDFICGDFFELLKRLKSNKIFDVVFLSP 77 (163)
T ss_dssp EEEETT-TTSHHHHHHHHTT-EEEEEES-HHHHHHHHHHHHHTT-GGGEEEEES-HHHHGGGB------SEEEE--
T ss_pred EEEEeccCcCHHHHHHHHhCCeEEEEECCHHHHHHHHHHHHHcCCCCcEEEEeCCHHHHHhhccccccccEEEECC
Confidence 699999999999999999989999999999999999999999998899999999999943322 289999864
No 178
>TIGR02143 trmA_only tRNA (uracil-5-)-methyltransferase. This family consists exclusively of proteins believed to act as tRNA (uracil-5-)-methyltransferase. All members of far are proteobacterial. The seed alignment was taken directly from pfam05958 in Pfam 12.0, but higher cutoffs are used to select only functionally equivalent proteins. Homologous proteins excluded by the higher cutoff scores of this model include other uracil methyltransferases, such as RumA, active on rRNA.
Probab=98.97 E-value=1.1e-09 Score=92.31 Aligned_cols=100 Identities=18% Similarity=0.116 Sum_probs=73.7
Q ss_pred CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC----------------
Q 026903 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---------------- 172 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---------------- 172 (231)
+.+|||+|||+|.++..+++....|+++|+++++++.|++++..++.. +++|+.+|+.+..+.
T Consensus 198 ~~~vlDl~~G~G~~sl~la~~~~~v~~vE~~~~av~~a~~n~~~~~~~-~v~~~~~d~~~~~~~~~~~~~~~~~~~~~~~ 276 (353)
T TIGR02143 198 KGDLLELYCGNGNFSLALAQNFRRVLATEIAKPSVNAAQYNIAANNID-NVQIIRMSAEEFTQAMNGVREFRRLKGIDLK 276 (353)
T ss_pred CCcEEEEeccccHHHHHHHHhCCEEEEEECCHHHHHHHHHHHHHcCCC-cEEEEEcCHHHHHHHHhhccccccccccccc
Confidence 357999999999999999887679999999999999999999877653 699999999873221
Q ss_pred -CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 173 -ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 173 -~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
..||+|+....-.- ...++++.+. +|++++|+.+-+.
T Consensus 277 ~~~~d~v~lDPPR~G----~~~~~l~~l~---~~~~ivYvsC~p~ 314 (353)
T TIGR02143 277 SYNCSTIFVDPPRAG----LDPDTCKLVQ---AYERILYISCNPE 314 (353)
T ss_pred cCCCCEEEECCCCCC----CcHHHHHHHH---cCCcEEEEEcCHH
Confidence 13799884322111 1134444443 4789999887543
No 179
>PF01170 UPF0020: Putative RNA methylase family UPF0020; InterPro: IPR000241 This domain is probably a methylase. It is associated with the THUMP domain that also occurs with RNA modification domains [].; PDB: 3LDU_A 3LDG_A 3K0B_A 3V8V_B 3V97_A 3TLJ_A 3TM5_B 3TM4_A 3TMA_A.
Probab=98.97 E-value=1e-08 Score=78.34 Aligned_cols=117 Identities=19% Similarity=0.273 Sum_probs=81.0
Q ss_pred CcHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcC--CCCe---------EEEEeCChHHHHHHHHHhccCCCCCceE
Q 026903 94 PAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMAS--PERY---------VVGLEISDIAIKKAEELSSSLPNAKFVS 160 (231)
Q Consensus 94 ~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~--~~~~---------v~~iD~s~~~i~~a~~~~~~~~~~~~i~ 160 (231)
.++.+...+-.. ..++..|||..||+|.+.+..+. .... ++|+|+++++++.|++|+...+....+.
T Consensus 12 L~~~lA~~ll~la~~~~~~~vlDP~CGsGtiliEaa~~~~~~~~~~~~~~~~~~g~Di~~~~v~~a~~N~~~ag~~~~i~ 91 (179)
T PF01170_consen 12 LRPTLAAALLNLAGWRPGDVVLDPFCGSGTILIEAALMGANIPPLNDINELKIIGSDIDPKAVRGARENLKAAGVEDYID 91 (179)
T ss_dssp S-HHHHHHHHHHTT--TTS-EEETT-TTSHHHHHHHHHHTTTSTTTH-CH--EEEEESSHHHHHHHHHHHHHTT-CGGEE
T ss_pred CCHHHHHHHHHHhCCCCCCEEeecCCCCCHHHHHHHHHhhCcccccccccccEEecCCCHHHHHHHHHHHHhcccCCceE
Confidence 355554444433 33457999999999999988765 2323 8899999999999999999888878899
Q ss_pred EEEccCCCCC-CCCceeEEEeCCcccc-cCh-----HHHHHHHHHHHhhcCCCcEEE
Q 026903 161 FLKADFFTWC-PTELFDLIFDYTFFCA-IEP-----EMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 161 ~~~~d~~~~~-~~~~fD~i~~~~~~~~-~~~-----~~~~~~l~~~~~~L~pgG~l~ 210 (231)
+.+.|+.+.. ..+.+|.|+++..+.. +.. +....+++.+.++|++..+++
T Consensus 92 ~~~~D~~~l~~~~~~~d~IvtnPPyG~r~~~~~~~~~ly~~~~~~~~~~l~~~~v~l 148 (179)
T PF01170_consen 92 FIQWDARELPLPDGSVDAIVTNPPYGRRLGSKKDLEKLYRQFLRELKRVLKPRAVFL 148 (179)
T ss_dssp EEE--GGGGGGTTSBSCEEEEE--STTSHCHHHHHHHHHHHHHHHHHCHSTTCEEEE
T ss_pred EEecchhhcccccCCCCEEEECcchhhhccCHHHHHHHHHHHHHHHHHHCCCCEEEE
Confidence 9999999955 6679999999876653 221 334677889999999943333
No 180
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.96 E-value=4.6e-08 Score=75.82 Aligned_cols=111 Identities=22% Similarity=0.247 Sum_probs=86.8
Q ss_pred HHHHHHHHcCCCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---
Q 026903 96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--- 169 (231)
Q Consensus 96 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--- 169 (231)
.++..+++ ...++++||+|.=+|+-++.+|. .+.+|+++|+++...+.+.+.....+...+|+++++...+.
T Consensus 63 ~fl~~li~--~~~ak~~lelGvfTGySaL~~Alalp~dGrv~a~eid~~~~~~~~~~~k~agv~~KI~~i~g~a~esLd~ 140 (237)
T KOG1663|consen 63 QFLQMLIR--LLNAKRTLELGVFTGYSALAVALALPEDGRVVAIEIDADAYEIGLELVKLAGVDHKITFIEGPALESLDE 140 (237)
T ss_pred HHHHHHHH--HhCCceEEEEecccCHHHHHHHHhcCCCceEEEEecChHHHHHhHHHHHhccccceeeeeecchhhhHHH
Confidence 33444554 34568999999999988887775 66799999999999999998888888888999999988872
Q ss_pred -C---CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 170 -C---PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 170 -~---~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
. ..++||++|. .|. ......+..++.+++++||+|++-.
T Consensus 141 l~~~~~~~tfDfaFv----Dad-K~nY~~y~e~~l~Llr~GGvi~~DN 183 (237)
T KOG1663|consen 141 LLADGESGTFDFAFV----DAD-KDNYSNYYERLLRLLRVGGVIVVDN 183 (237)
T ss_pred HHhcCCCCceeEEEE----ccc-hHHHHHHHHHHHhhcccccEEEEec
Confidence 1 3468999993 221 2334578899999999999987755
No 181
>PTZ00338 dimethyladenosine transferase-like protein; Provisional
Probab=98.96 E-value=4.7e-09 Score=86.21 Aligned_cols=90 Identities=17% Similarity=0.208 Sum_probs=71.8
Q ss_pred cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903 95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
...+..++..... ++.+|||||||.|.++..+++.+.+|+++|+++.+++.+++++...+..++++++.+|+.+... .
T Consensus 22 ~~i~~~Iv~~~~~~~~~~VLEIG~G~G~LT~~Ll~~~~~V~avEiD~~li~~l~~~~~~~~~~~~v~ii~~Dal~~~~-~ 100 (294)
T PTZ00338 22 PLVLDKIVEKAAIKPTDTVLEIGPGTGNLTEKLLQLAKKVIAIEIDPRMVAELKKRFQNSPLASKLEVIEGDALKTEF-P 100 (294)
T ss_pred HHHHHHHHHhcCCCCcCEEEEecCchHHHHHHHHHhCCcEEEEECCHHHHHHHHHHHHhcCCCCcEEEEECCHhhhcc-c
Confidence 4455666665543 5589999999999999999998889999999999999999988765444679999999988432 3
Q ss_pred ceeEEEeCCccc
Q 026903 174 LFDLIFDYTFFC 185 (231)
Q Consensus 174 ~fD~i~~~~~~~ 185 (231)
.||.|+++..++
T Consensus 101 ~~d~VvaNlPY~ 112 (294)
T PTZ00338 101 YFDVCVANVPYQ 112 (294)
T ss_pred ccCEEEecCCcc
Confidence 689998765554
No 182
>PLN02823 spermine synthase
Probab=98.95 E-value=1.1e-08 Score=85.36 Aligned_cols=105 Identities=16% Similarity=0.094 Sum_probs=78.6
Q ss_pred CCCcEEEecCCCchHHHHhcC-C-CCeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCCC--CCCceeEEEe
Q 026903 108 PKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWC--PTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~-~-~~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~--~~~~fD~i~~ 180 (231)
.+++||.+|+|.|..+..+++ . ..+++.+|+++++++.|++.+.... .+++++++.+|..... ..++||+|++
T Consensus 103 ~pk~VLiiGgG~G~~~re~l~~~~~~~v~~VEiD~~vv~lar~~~~~~~~~~~dprv~v~~~Da~~~L~~~~~~yDvIi~ 182 (336)
T PLN02823 103 NPKTVFIMGGGEGSTAREVLRHKTVEKVVMCDIDQEVVDFCRKHLTVNREAFCDKRLELIINDARAELEKRDEKFDVIIG 182 (336)
T ss_pred CCCEEEEECCCchHHHHHHHhCCCCCeEEEEECCHHHHHHHHHhcccccccccCCceEEEEChhHHHHhhCCCCccEEEe
Confidence 457999999999999998887 3 3489999999999999999875432 2468999999999843 3458999997
Q ss_pred CCcccc--cChH--HHHHHHH-HHHhhcCCCcEEEEE
Q 026903 181 YTFFCA--IEPE--MRAAWAQ-KIKDFLKPDGELITL 212 (231)
Q Consensus 181 ~~~~~~--~~~~--~~~~~l~-~~~~~L~pgG~l~~~ 212 (231)
-..-.. -++. .-..+++ .+.+.|+|||++++.
T Consensus 183 D~~dp~~~~~~~~Lyt~eF~~~~~~~~L~p~Gvlv~q 219 (336)
T PLN02823 183 DLADPVEGGPCYQLYTKSFYERIVKPKLNPGGIFVTQ 219 (336)
T ss_pred cCCCccccCcchhhccHHHHHHHHHHhcCCCcEEEEe
Confidence 632110 0111 1246777 899999999988653
No 183
>TIGR00755 ksgA dimethyladenosine transferase. Alternate name: S-adenosylmethionine--6-N',N'-adenosyl (rRNA) dimethyltransferase
Probab=98.94 E-value=2.2e-08 Score=80.80 Aligned_cols=109 Identities=17% Similarity=0.173 Sum_probs=76.5
Q ss_pred cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903 95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
...+..++..... ++.+|||+|||+|.++..+++.+..++++|+++.+++.++++... .++++++.+|+.+....
T Consensus 15 ~~i~~~i~~~~~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~~iE~d~~~~~~l~~~~~~---~~~v~v~~~D~~~~~~~- 90 (253)
T TIGR00755 15 ESVIQKIVEAANVLEGDVVLEIGPGLGALTEPLLKRAKKVTAIEIDPRLAEILRKLLSL---YERLEVIEGDALKVDLP- 90 (253)
T ss_pred HHHHHHHHHhcCCCCcCEEEEeCCCCCHHHHHHHHhCCcEEEEECCHHHHHHHHHHhCc---CCcEEEEECchhcCChh-
Confidence 4556666665533 458999999999999999999888999999999999999987743 24799999999884432
Q ss_pred cee---EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 174 LFD---LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 174 ~fD---~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.+| +|+++..+ |++ ..++..+.. .+++...+..+
T Consensus 91 ~~d~~~~vvsNlPy-~i~----~~il~~ll~--~~~~~~~~~~~ 127 (253)
T TIGR00755 91 DFPKQLKVVSNLPY-NIS----SPLIFKLLE--KPKFRLAVLMV 127 (253)
T ss_pred HcCCcceEEEcCCh-hhH----HHHHHHHhc--cCCCceEEEEe
Confidence 466 66655443 333 334444443 45554444443
No 184
>PRK05031 tRNA (uracil-5-)-methyltransferase; Validated
Probab=98.94 E-value=2.4e-09 Score=90.67 Aligned_cols=98 Identities=19% Similarity=0.138 Sum_probs=73.8
Q ss_pred CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------------C
Q 026903 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------------T 172 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------------~ 172 (231)
.+|||++||+|.++..+++...+|+++|.++.+++.++++...+++. +++|+.+|+.+..+ .
T Consensus 208 ~~vLDl~~G~G~~sl~la~~~~~v~~vE~~~~ai~~a~~N~~~~~~~-~v~~~~~d~~~~l~~~~~~~~~~~~~~~~~~~ 286 (362)
T PRK05031 208 GDLLELYCGNGNFTLALARNFRRVLATEISKPSVAAAQYNIAANGID-NVQIIRMSAEEFTQAMNGVREFNRLKGIDLKS 286 (362)
T ss_pred CeEEEEeccccHHHHHHHhhCCEEEEEECCHHHHHHHHHHHHHhCCC-cEEEEECCHHHHHHHHhhcccccccccccccC
Confidence 57999999999999999887779999999999999999998777653 79999999877321 1
Q ss_pred CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
..||+|+....-.-+ ..++++.+. +|++++|+.+-+
T Consensus 287 ~~~D~v~lDPPR~G~----~~~~l~~l~---~~~~ivyvSC~p 322 (362)
T PRK05031 287 YNFSTIFVDPPRAGL----DDETLKLVQ---AYERILYISCNP 322 (362)
T ss_pred CCCCEEEECCCCCCC----cHHHHHHHH---ccCCEEEEEeCH
Confidence 258999943332111 134444444 378888888765
No 185
>KOG3045 consensus Predicted RNA methylase involved in rRNA processing [RNA processing and modification]
Probab=98.94 E-value=3.6e-09 Score=83.01 Aligned_cols=114 Identities=15% Similarity=0.145 Sum_probs=79.9
Q ss_pred hhhhccCCCCCCCCCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCc
Q 026903 79 EKCWEEGLTPWDIGQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF 158 (231)
Q Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~ 158 (231)
+.-|......|-. +|...+.+.+.. ......|-|+|||.+.++. +.-..|+.+|+.+ .+
T Consensus 153 H~gfr~QV~kWP~-nPld~ii~~ik~-r~~~~vIaD~GCGEakiA~---~~~~kV~SfDL~a----------------~~ 211 (325)
T KOG3045|consen 153 HAGFRSQVKKWPE-NPLDVIIRKIKR-RPKNIVIADFGCGEAKIAS---SERHKVHSFDLVA----------------VN 211 (325)
T ss_pred HHHHHHHHHhCCC-ChHHHHHHHHHh-CcCceEEEecccchhhhhh---ccccceeeeeeec----------------CC
Confidence 3333344446653 333333333332 2234799999999998876 3445899999843 24
Q ss_pred eEEEEccCCC-CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 159 VSFLKADFFT-WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 159 i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
-+++.+|+.+ +.++++.|++++...+.- ++...++.++.++|++||.|+|.+...
T Consensus 212 ~~V~~cDm~~vPl~d~svDvaV~CLSLMg---tn~~df~kEa~RiLk~gG~l~IAEv~S 267 (325)
T KOG3045|consen 212 ERVIACDMRNVPLEDESVDVAVFCLSLMG---TNLADFIKEANRILKPGGLLYIAEVKS 267 (325)
T ss_pred CceeeccccCCcCccCcccEEEeeHhhhc---ccHHHHHHHHHHHhccCceEEEEehhh
Confidence 5689999999 677889999997655543 466789999999999999999988644
No 186
>KOG3191 consensus Predicted N6-DNA-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.93 E-value=1.1e-08 Score=76.25 Aligned_cols=108 Identities=18% Similarity=0.288 Sum_probs=83.9
Q ss_pred CCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903 109 KGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~ 185 (231)
...++|||||+|..+.+|++ ++..+.++|+++++++...+.+..++ .+++.++.|+..-...++.|+++.+..+.
T Consensus 44 ~~i~lEIG~GSGvvstfL~~~i~~~~~~latDiNp~A~~~Tl~TA~~n~--~~~~~V~tdl~~~l~~~~VDvLvfNPPYV 121 (209)
T KOG3191|consen 44 PEICLEIGCGSGVVSTFLASVIGPQALYLATDINPEALEATLETARCNR--VHIDVVRTDLLSGLRNESVDVLVFNPPYV 121 (209)
T ss_pred ceeEEEecCCcchHHHHHHHhcCCCceEEEecCCHHHHHHHHHHHHhcC--CccceeehhHHhhhccCCccEEEECCCcC
Confidence 57999999999999999988 45589999999999998888776654 35889999999965568999998764432
Q ss_pred ccCh-------------------HHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 186 AIEP-------------------EMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 186 ~~~~-------------------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
--++ +...+++..+-+.|.|.|++|++.-..++
T Consensus 122 pt~~~~i~~~~i~~a~aGG~~Gr~v~d~ll~~v~~iLSp~Gv~Ylv~~~~N~ 173 (209)
T KOG3191|consen 122 PTSDEEIGDEGIASAWAGGKDGREVTDRLLPQVPDILSPRGVFYLVALRANK 173 (209)
T ss_pred cCCcccchhHHHHHHHhcCcchHHHHHHHHhhhhhhcCcCceEEeeehhhcC
Confidence 2111 12357777788899999999988766543
No 187
>KOG2730 consensus Methylase [General function prediction only]
Probab=98.93 E-value=7.5e-10 Score=84.78 Aligned_cols=120 Identities=19% Similarity=0.278 Sum_probs=86.4
Q ss_pred CCCCCCCCCcHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE
Q 026903 86 LTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK 163 (231)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~ 163 (231)
...|..-.|.+....+.... ......|+|..||.|..+..++..+..|+++|++|.-+..|+++++-+++.++|+|++
T Consensus 70 ~e~wfsvTpe~ia~~iA~~v~~~~~~~~iidaf~g~gGntiqfa~~~~~VisIdiDPikIa~AkhNaeiYGI~~rItFI~ 149 (263)
T KOG2730|consen 70 REGWFSVTPEKIAEHIANRVVACMNAEVIVDAFCGVGGNTIQFALQGPYVIAIDIDPVKIACARHNAEVYGVPDRITFIC 149 (263)
T ss_pred ccceEEeccHHHHHHHHHHHHHhcCcchhhhhhhcCCchHHHHHHhCCeEEEEeccHHHHHHHhccceeecCCceeEEEe
Confidence 33566666666665555543 2355799999999999999999999999999999999999999999999999999999
Q ss_pred ccCCCCCCC-----CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCc
Q 026903 164 ADFFTWCPT-----ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDG 207 (231)
Q Consensus 164 ~d~~~~~~~-----~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG 207 (231)
+|+.+.+.. .-+|+|+.+..+..- .....-+-.+...++|.|
T Consensus 150 GD~ld~~~~lq~~K~~~~~vf~sppwggp--~y~~~~~~DL~~~~~p~~ 196 (263)
T KOG2730|consen 150 GDFLDLASKLKADKIKYDCVFLSPPWGGP--SYLRADVYDLETHLKPMG 196 (263)
T ss_pred chHHHHHHHHhhhhheeeeeecCCCCCCc--chhhhhhhhhhhhcchhH
Confidence 999994432 235677755433321 222233344445555543
No 188
>PRK14896 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Provisional
Probab=98.93 E-value=9.3e-09 Score=83.22 Aligned_cols=87 Identities=11% Similarity=0.074 Sum_probs=69.7
Q ss_pred cHHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903 95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
...+..++.... .++.+|||+|||+|.++..+++.+.+++++|+++.+++.++++.... ++++++++|+.+... .
T Consensus 15 ~~~~~~iv~~~~~~~~~~VLEIG~G~G~lt~~L~~~~~~v~~vEid~~~~~~l~~~~~~~---~~v~ii~~D~~~~~~-~ 90 (258)
T PRK14896 15 DRVVDRIVEYAEDTDGDPVLEIGPGKGALTDELAKRAKKVYAIELDPRLAEFLRDDEIAA---GNVEIIEGDALKVDL-P 90 (258)
T ss_pred HHHHHHHHHhcCCCCcCeEEEEeCccCHHHHHHHHhCCEEEEEECCHHHHHHHHHHhccC---CCEEEEEeccccCCc-h
Confidence 455566666543 35589999999999999999998889999999999999999887542 479999999988432 2
Q ss_pred ceeEEEeCCccc
Q 026903 174 LFDLIFDYTFFC 185 (231)
Q Consensus 174 ~fD~i~~~~~~~ 185 (231)
.||.|+++..++
T Consensus 91 ~~d~Vv~NlPy~ 102 (258)
T PRK14896 91 EFNKVVSNLPYQ 102 (258)
T ss_pred hceEEEEcCCcc
Confidence 489999876654
No 189
>KOG1661 consensus Protein-L-isoaspartate(D-aspartate) O-methyltransferase [Posttranslational modification, protein turnover, chaperones]
Probab=98.91 E-value=1.1e-08 Score=78.06 Aligned_cols=106 Identities=20% Similarity=0.168 Sum_probs=80.4
Q ss_pred HHHHHcCCCCCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCC---------CCCceEEEEcc
Q 026903 99 VHLHQSGALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLP---------NAKFVSFLKAD 165 (231)
Q Consensus 99 ~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~---------~~~~i~~~~~d 165 (231)
-+.+.....|+.+.||+|+|+|+++..++. .|..++|||.-++.++.+++++...- ...++.++.+|
T Consensus 73 le~L~~~L~pG~s~LdvGsGSGYLt~~~~~mvg~~g~~~~GIEh~~eLVe~Sk~nl~k~i~~~e~~~~~~~~~l~ivvGD 152 (237)
T KOG1661|consen 73 LEYLDDHLQPGASFLDVGSGSGYLTACFARMVGATGGNVHGIEHIPELVEYSKKNLDKDITTSESSSKLKRGELSIVVGD 152 (237)
T ss_pred HHHHHHhhccCcceeecCCCccHHHHHHHHHhcCCCccccchhhhHHHHHHHHHHHHhhccCchhhhhhccCceEEEeCC
Confidence 334443456889999999999999887774 66667999999999999999875431 12367888999
Q ss_pred CCCC-CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 166 FFTW-CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 166 ~~~~-~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
.... ....+||.|++-..-.- ..+++...|++||.+++.
T Consensus 153 gr~g~~e~a~YDaIhvGAaa~~--------~pq~l~dqL~~gGrllip 192 (237)
T KOG1661|consen 153 GRKGYAEQAPYDAIHVGAAASE--------LPQELLDQLKPGGRLLIP 192 (237)
T ss_pred ccccCCccCCcceEEEccCccc--------cHHHHHHhhccCCeEEEe
Confidence 9884 44568999998754432 356788889999998874
No 190
>PF05219 DREV: DREV methyltransferase; InterPro: IPR007884 This family contains DREV protein homologues from several eukaryotes. The function of this protein is unknown []. However, these proteins appear to be related to other methyltransferases.
Probab=98.91 E-value=8.5e-09 Score=81.58 Aligned_cols=93 Identities=22% Similarity=0.206 Sum_probs=72.3
Q ss_pred CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCccccc
Q 026903 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFFCAI 187 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~~~~~ 187 (231)
..++||||+|.|..+..++..-.+|+++|.|+.|....+++- .+++.. .++. .+.+||+|.|.+++..-
T Consensus 95 ~~~lLDlGAGdG~VT~~l~~~f~~v~aTE~S~~Mr~rL~~kg--------~~vl~~--~~w~~~~~~fDvIscLNvLDRc 164 (265)
T PF05219_consen 95 DKSLLDLGAGDGEVTERLAPLFKEVYATEASPPMRWRLSKKG--------FTVLDI--DDWQQTDFKFDVISCLNVLDRC 164 (265)
T ss_pred CCceEEecCCCcHHHHHHHhhcceEEeecCCHHHHHHHHhCC--------CeEEeh--hhhhccCCceEEEeehhhhhcc
Confidence 368999999999999999887778999999999987776642 233322 2221 23579999999998765
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 188 EPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
. ....+|+.+++.|+|+|+|++..
T Consensus 165 ~--~P~~LL~~i~~~l~p~G~lilAv 188 (265)
T PF05219_consen 165 D--RPLTLLRDIRRALKPNGRLILAV 188 (265)
T ss_pred C--CHHHHHHHHHHHhCCCCEEEEEE
Confidence 3 33678999999999999988654
No 191
>PRK00274 ksgA 16S ribosomal RNA methyltransferase KsgA/Dim1 family protein; Reviewed
Probab=98.90 E-value=8.5e-09 Score=84.07 Aligned_cols=86 Identities=15% Similarity=0.103 Sum_probs=66.6
Q ss_pred cHHHHHHHHcCC-CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903 95 APIIVHLHQSGA-LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
...+..+++... .++.+|||+|||+|.++..+++.+.+|+++|+++.+++.++++... ++++++++|+.+...+.
T Consensus 28 ~~i~~~i~~~l~~~~~~~VLEiG~G~G~lt~~L~~~~~~v~avE~d~~~~~~~~~~~~~----~~v~~i~~D~~~~~~~~ 103 (272)
T PRK00274 28 ENILDKIVDAAGPQPGDNVLEIGPGLGALTEPLLERAAKVTAVEIDRDLAPILAETFAE----DNLTIIEGDALKVDLSE 103 (272)
T ss_pred HHHHHHHHHhcCCCCcCeEEEeCCCccHHHHHHHHhCCcEEEEECCHHHHHHHHHhhcc----CceEEEEChhhcCCHHH
Confidence 344556666543 3557999999999999999999878999999999999999987643 47999999999853322
Q ss_pred c-eeEEEeCCcc
Q 026903 174 L-FDLIFDYTFF 184 (231)
Q Consensus 174 ~-fD~i~~~~~~ 184 (231)
. ++.|+++..+
T Consensus 104 ~~~~~vv~NlPY 115 (272)
T PRK00274 104 LQPLKVVANLPY 115 (272)
T ss_pred cCcceEEEeCCc
Confidence 2 5788876543
No 192
>COG0742 N6-adenine-specific methylase [DNA replication, recombination, and repair]
Probab=98.88 E-value=4.2e-08 Score=74.38 Aligned_cols=107 Identities=21% Similarity=0.121 Sum_probs=80.8
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCC--ceeEEEeC
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTE--LFDLIFDY 181 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~--~fD~i~~~ 181 (231)
..+.++||+.+|+|.++...+++|+ .++.+|.+.+++...++|....+...+..++..|.... .... .||+|+.-
T Consensus 42 i~g~~~LDlFAGSGaLGlEAlSRGA~~~~~vE~~~~a~~~l~~N~~~l~~~~~~~~~~~da~~~L~~~~~~~~FDlVflD 121 (187)
T COG0742 42 IEGARVLDLFAGSGALGLEALSRGAARVVFVEKDRKAVKILKENLKALGLEGEARVLRNDALRALKQLGTREPFDLVFLD 121 (187)
T ss_pred cCCCEEEEecCCccHhHHHHHhCCCceEEEEecCHHHHHHHHHHHHHhCCccceEEEeecHHHHHHhcCCCCcccEEEeC
Confidence 6678999999999999999999987 99999999999999999998887777899999998863 1222 49999976
Q ss_pred Ccccc-cChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 182 TFFCA-IEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 182 ~~~~~-~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
..++. +-+....-.+-.-...|+|+|.+++..
T Consensus 122 PPy~~~l~~~~~~~~~~~~~~~L~~~~~iv~E~ 154 (187)
T COG0742 122 PPYAKGLLDKELALLLLEENGWLKPGALIVVEH 154 (187)
T ss_pred CCCccchhhHHHHHHHHHhcCCcCCCcEEEEEe
Confidence 66552 111111112222446799999876643
No 193
>PRK01544 bifunctional N5-glutamine S-adenosyl-L-methionine-dependent methyltransferase/tRNA (m7G46) methyltransferase; Reviewed
Probab=98.85 E-value=1.4e-08 Score=89.60 Aligned_cols=104 Identities=17% Similarity=0.176 Sum_probs=82.0
Q ss_pred CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCc
Q 026903 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTF 183 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~~ 183 (231)
...+||||||.|.++..+|. +...++|+|+....+..+.+.....++ .|+.++..|+.. .++++++|.|+.++.
T Consensus 348 ~p~~lEIG~G~G~~~~~~A~~~p~~~~iGiE~~~~~~~~~~~~~~~~~l-~N~~~~~~~~~~~~~~~~~~sv~~i~i~FP 426 (506)
T PRK01544 348 RKVFLEIGFGMGEHFINQAKMNPDALFIGVEVYLNGVANVLKLAGEQNI-TNFLLFPNNLDLILNDLPNNSLDGIYILFP 426 (506)
T ss_pred CceEEEECCCchHHHHHHHHhCCCCCEEEEEeeHHHHHHHHHHHHHcCC-CeEEEEcCCHHHHHHhcCcccccEEEEECC
Confidence 46999999999999999998 667999999999999888777665544 468888887643 556778999997765
Q ss_pred ccccChH------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903 184 FCAIEPE------MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 184 ~~~~~~~------~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
-.|.-.. ....+++.+.+.|+|||.+.+.+
T Consensus 427 DPWpKkrh~krRl~~~~fl~~~~~~Lk~gG~i~~~T 462 (506)
T PRK01544 427 DPWIKNKQKKKRIFNKERLKILQDKLKDNGNLVFAS 462 (506)
T ss_pred CCCCCCCCccccccCHHHHHHHHHhcCCCCEEEEEc
Confidence 4442111 22689999999999999998755
No 194
>COG2521 Predicted archaeal methyltransferase [General function prediction only]
Probab=98.85 E-value=7.6e-09 Score=80.10 Aligned_cols=109 Identities=17% Similarity=0.143 Sum_probs=83.2
Q ss_pred CCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCC-CCCceEEEEccCCC---CCCCCceeEEEeCC
Q 026903 108 PKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLP-NAKFVSFLKADFFT---WCPTELFDLIFDYT 182 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~-~~~~i~~~~~d~~~---~~~~~~fD~i~~~~ 182 (231)
.+.+|||...|-|+++...+++|+ +|+.+|-++..++.|.-|-...+ ...+|.++.+|..+ .+.+.+||+|+...
T Consensus 134 ~G~rVLDtC~GLGYtAi~a~~rGA~~VitvEkdp~VLeLa~lNPwSr~l~~~~i~iilGD~~e~V~~~~D~sfDaIiHDP 213 (287)
T COG2521 134 RGERVLDTCTGLGYTAIEALERGAIHVITVEKDPNVLELAKLNPWSRELFEIAIKIILGDAYEVVKDFDDESFDAIIHDP 213 (287)
T ss_pred cCCEeeeeccCccHHHHHHHHcCCcEEEEEeeCCCeEEeeccCCCCccccccccEEecccHHHHHhcCCccccceEeeCC
Confidence 468999999999999999999999 99999999999999876532221 23468999999998 45677899999532
Q ss_pred c-ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 183 F-FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 183 ~-~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
. |.+...-....+.+++.++|+|||.|+-..=.|
T Consensus 214 PRfS~AgeLYseefY~El~RiLkrgGrlFHYvG~P 248 (287)
T COG2521 214 PRFSLAGELYSEEFYRELYRILKRGGRLFHYVGNP 248 (287)
T ss_pred CccchhhhHhHHHHHHHHHHHcCcCCcEEEEeCCC
Confidence 2 222221233688999999999999996544333
No 195
>PRK00050 16S rRNA m(4)C1402 methyltranserfase; Provisional
Probab=98.85 E-value=3.1e-08 Score=81.01 Aligned_cols=81 Identities=15% Similarity=0.103 Sum_probs=62.9
Q ss_pred HHHHHHcCC-CCCCcEEEecCCCchHHHHhcCC---CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---C
Q 026903 98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP---ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---C 170 (231)
Q Consensus 98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~---~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~ 170 (231)
+++++.... .++..+||.+||.|..+..+++. ..+|+|+|.++++++.+++++.. .++++++++|+.+. .
T Consensus 8 l~Evl~~L~~~pg~~vlD~TlG~GGhS~~il~~~~~~g~VigiD~D~~al~~ak~~L~~---~~ri~~i~~~f~~l~~~l 84 (296)
T PRK00050 8 LDEVVDALAIKPDGIYVDGTFGGGGHSRAILERLGPKGRLIAIDRDPDAIAAAKDRLKP---FGRFTLVHGNFSNLKEVL 84 (296)
T ss_pred HHHHHHhhCCCCCCEEEEeCcCChHHHHHHHHhCCCCCEEEEEcCCHHHHHHHHHhhcc---CCcEEEEeCCHHHHHHHH
Confidence 344454443 45679999999999999999984 36899999999999999988755 35799999999882 2
Q ss_pred CCC--ceeEEEeC
Q 026903 171 PTE--LFDLIFDY 181 (231)
Q Consensus 171 ~~~--~fD~i~~~ 181 (231)
+.+ ++|.|++.
T Consensus 85 ~~~~~~vDgIl~D 97 (296)
T PRK00050 85 AEGLGKVDGILLD 97 (296)
T ss_pred HcCCCccCEEEEC
Confidence 222 68888864
No 196
>KOG2940 consensus Predicted methyltransferase [General function prediction only]
Probab=98.80 E-value=3.1e-09 Score=82.06 Aligned_cols=103 Identities=19% Similarity=0.094 Sum_probs=83.5
Q ss_pred CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCccccc
Q 026903 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTFFCAI 187 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~ 187 (231)
..++|||||.|.....+...+. +++-+|.|..+++.++..-. .. -......+|-+. .+.+.++|+|+++..+|+.
T Consensus 74 p~a~diGcs~G~v~rhl~~e~vekli~~DtS~~M~~s~~~~qd-p~--i~~~~~v~DEE~Ldf~ens~DLiisSlslHW~ 150 (325)
T KOG2940|consen 74 PTAFDIGCSLGAVKRHLRGEGVEKLIMMDTSYDMIKSCRDAQD-PS--IETSYFVGDEEFLDFKENSVDLIISSLSLHWT 150 (325)
T ss_pred cceeecccchhhhhHHHHhcchhheeeeecchHHHHHhhccCC-Cc--eEEEEEecchhcccccccchhhhhhhhhhhhh
Confidence 6999999999999999988776 89999999999999886421 11 124455666555 5667899999999999998
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 188 EPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
++++..+.+|...|||+|.++...+..+
T Consensus 151 --NdLPg~m~~ck~~lKPDg~Fiasmlggd 178 (325)
T KOG2940|consen 151 --NDLPGSMIQCKLALKPDGLFIASMLGGD 178 (325)
T ss_pred --ccCchHHHHHHHhcCCCccchhHHhccc
Confidence 5677889999999999999987776654
No 197
>KOG3420 consensus Predicted RNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.79 E-value=2.8e-08 Score=71.41 Aligned_cols=78 Identities=19% Similarity=0.302 Sum_probs=65.2
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCc
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~ 183 (231)
...+++++|+|||+|.++...+-++. .|+|+|+++++++.+++|..+..+ ++++.++|+.++. ..+.||..+.+..
T Consensus 46 diEgkkl~DLgcgcGmLs~a~sm~~~e~vlGfDIdpeALEIf~rNaeEfEv--qidlLqcdildle~~~g~fDtaviNpp 123 (185)
T KOG3420|consen 46 DIEGKKLKDLGCGCGMLSIAFSMPKNESVLGFDIDPEALEIFTRNAEEFEV--QIDLLQCDILDLELKGGIFDTAVINPP 123 (185)
T ss_pred cccCcchhhhcCchhhhHHHhhcCCCceEEeeecCHHHHHHHhhchHHhhh--hhheeeeeccchhccCCeEeeEEecCC
Confidence 46789999999999999977766665 899999999999999999988654 4789999999944 3468999998766
Q ss_pred cc
Q 026903 184 FC 185 (231)
Q Consensus 184 ~~ 185 (231)
|.
T Consensus 124 FG 125 (185)
T KOG3420|consen 124 FG 125 (185)
T ss_pred CC
Confidence 54
No 198
>PF07942 N2227: N2227-like protein; InterPro: IPR012901 This family features sequences that are similar to a region of hypothetical yeast gene product N2227 (P53934 from SWISSPROT). This is thought to be expressed during meiosis and may be involved in the defence response to stressful conditions [].
Probab=98.78 E-value=4e-08 Score=79.07 Aligned_cols=100 Identities=26% Similarity=0.312 Sum_probs=76.2
Q ss_pred CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc----CC------------------------------
Q 026903 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS----LP------------------------------ 154 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~----~~------------------------------ 154 (231)
+.+||-.|||.|+++..++..|..+.|.|.|--|+-..+-.+.. ..
T Consensus 57 ~~~VLVPGsGLGRLa~Eia~~G~~~~gnE~S~~Mll~s~fiLn~~~~~~~~~I~Pf~~~~sn~~~~~dqlr~v~iPDv~p 136 (270)
T PF07942_consen 57 KIRVLVPGSGLGRLAWEIAKLGYAVQGNEFSYFMLLASNFILNHCSQPNQFTIYPFVHSFSNQKSREDQLRPVRIPDVDP 136 (270)
T ss_pred ccEEEEcCCCcchHHHHHhhccceEEEEEchHHHHHHHHHHHcccCCCCcEEEecceecccCCCCHHHhCCceEeCCcCc
Confidence 46999999999999999999999999999999886544332211 00
Q ss_pred -----CCCceEEEEccCCCCCC-C---CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903 155 -----NAKFVSFLKADFFTWCP-T---ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 155 -----~~~~i~~~~~d~~~~~~-~---~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 210 (231)
...++.+..||+.+... . +.||+|++.+.+.-. +....+++.+.++|||||+.+
T Consensus 137 ~~~~~~~~~~sm~aGDF~e~y~~~~~~~~~d~VvT~FFIDTA--~Ni~~Yi~tI~~lLkpgG~WI 199 (270)
T PF07942_consen 137 SSELPSPSNLSMCAGDFLEVYGPDENKGSFDVVVTCFFIDTA--ENIIEYIETIEHLLKPGGYWI 199 (270)
T ss_pred ccccCCCCceeEecCccEEecCCcccCCcccEEEEEEEeech--HHHHHHHHHHHHHhccCCEEE
Confidence 12367788888888433 2 589999987554432 567899999999999999554
No 199
>COG2265 TrmA SAM-dependent methyltransferases related to tRNA (uracil-5-)-methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=98.78 E-value=3.7e-08 Score=84.76 Aligned_cols=103 Identities=22% Similarity=0.214 Sum_probs=79.9
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC----CceeEEEeCCc
Q 026903 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT----ELFDLIFDYTF 183 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~----~~fD~i~~~~~ 183 (231)
++.++||+-||.|.+++.++++..+|+|+|+++++++.|++++..++..+ ++|+.++.++..+. ..+|.|+....
T Consensus 293 ~~~~vlDlYCGvG~f~l~lA~~~~~V~gvEi~~~aV~~A~~NA~~n~i~N-~~f~~~~ae~~~~~~~~~~~~d~VvvDPP 371 (432)
T COG2265 293 GGERVLDLYCGVGTFGLPLAKRVKKVHGVEISPEAVEAAQENAAANGIDN-VEFIAGDAEEFTPAWWEGYKPDVVVVDPP 371 (432)
T ss_pred CCCEEEEeccCCChhhhhhcccCCEEEEEecCHHHHHHHHHHHHHcCCCc-EEEEeCCHHHHhhhccccCCCCEEEECCC
Confidence 45799999999999999999999999999999999999999999988765 99999999994432 47899994322
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
=.-++ ..+++.+ ..++|..++|+++-+.
T Consensus 372 R~G~~----~~~lk~l-~~~~p~~IvYVSCNP~ 399 (432)
T COG2265 372 RAGAD----REVLKQL-AKLKPKRIVYVSCNPA 399 (432)
T ss_pred CCCCC----HHHHHHH-HhcCCCcEEEEeCCHH
Confidence 22221 2344444 4458888888887554
No 200
>PRK04338 N(2),N(2)-dimethylguanosine tRNA methyltransferase; Provisional
Probab=98.78 E-value=1.9e-08 Score=85.54 Aligned_cols=97 Identities=14% Similarity=0.025 Sum_probs=77.2
Q ss_pred CCcEEEecCCCchHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CCceeEEEeCCccc
Q 026903 109 KGRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFC 185 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~fD~i~~~~~~~ 185 (231)
+.+|||++||+|..++.++. .+ ..|+++|+++.+++.+++|+..+++. ++++.++|+..... ...||+|+....
T Consensus 58 ~~~vLDl~aGsG~~~l~~a~~~~~~~V~a~Din~~Av~~a~~N~~~N~~~-~~~v~~~Da~~~l~~~~~fD~V~lDP~-- 134 (382)
T PRK04338 58 RESVLDALSASGIRGIRYALETGVEKVTLNDINPDAVELIKKNLELNGLE-NEKVFNKDANALLHEERKFDVVDIDPF-- 134 (382)
T ss_pred CCEEEECCCcccHHHHHHHHHCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-ceEEEhhhHHHHHhhcCCCCEEEECCC--
Confidence 35899999999999999976 33 38999999999999999999877653 46789999877443 467999996432
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
-. ...++....+.+++||+|++.
T Consensus 135 Gs----~~~~l~~al~~~~~~gilyvS 157 (382)
T PRK04338 135 GS----PAPFLDSAIRSVKRGGLLCVT 157 (382)
T ss_pred CC----cHHHHHHHHHHhcCCCEEEEE
Confidence 11 135778877888999999987
No 201
>PRK00536 speE spermidine synthase; Provisional
Probab=98.76 E-value=6.4e-08 Score=77.85 Aligned_cols=97 Identities=14% Similarity=0.066 Sum_probs=73.4
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC---CCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL---PNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~---~~~~~i~~~~~d~~~~~~~~~fD~i~~~~ 182 (231)
...+++||-+|.|.|..++.+++...+|+-+|+++++++.+++.+... -.++|++++.. +.+ ...++||+|+.-.
T Consensus 70 h~~pk~VLIiGGGDGg~~REvLkh~~~v~mVeID~~Vv~~~k~~lP~~~~~~~DpRv~l~~~-~~~-~~~~~fDVIIvDs 147 (262)
T PRK00536 70 KKELKEVLIVDGFDLELAHQLFKYDTHVDFVQADEKILDSFISFFPHFHEVKNNKNFTHAKQ-LLD-LDIKKYDLIICLQ 147 (262)
T ss_pred CCCCCeEEEEcCCchHHHHHHHCcCCeeEEEECCHHHHHHHHHHCHHHHHhhcCCCEEEeeh-hhh-ccCCcCCEEEEcC
Confidence 445589999999999999999995459999999999999999955432 12457777652 221 1235899999654
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
. .+ ..+.+.+.++|+|||+++.
T Consensus 148 ~---~~----~~fy~~~~~~L~~~Gi~v~ 169 (262)
T PRK00536 148 E---PD----IHKIDGLKRMLKEDGVFIS 169 (262)
T ss_pred C---CC----hHHHHHHHHhcCCCcEEEE
Confidence 3 11 4567899999999998876
No 202
>PF01564 Spermine_synth: Spermine/spermidine synthase; InterPro: IPR001045 Synonym(s): Spermidine aminopropyltransferase A group of polyamine biosynthetic enzymes involved in the fifth (last) step in the biosynthesis of spermidine from arginine and methionine which includes; spermidine synthase (2.5.1.16 from EC), spermine synthase (2.5.1.22 from EC) and putrescine N-methyltransferase (2.1.1.53 from EC) []. The Thermotoga maritima spermidine synthase monomer consists of two domains: an N-terminal domain composed of six beta-strands, and a Rossmann-like C- terminal domain []. The larger C-terminal catalytic core domain consists of a seven-stranded beta-sheet flanked by nine alpha helices. This domain resembles a topology observed in a number of nucleotide and dinucleotide-binding enzymes, and in S-adenosyl-L-methionine (AdoMet)- dependent methyltransferase (MTases) [].; GO: 0003824 catalytic activity; PDB: 2E5W_C 2ZSU_E 2O0L_B 2O05_B 2O06_B 2O07_B 3RW9_B 2PWP_A 2HTE_B 3RIE_B ....
Probab=98.73 E-value=4.9e-08 Score=78.32 Aligned_cols=110 Identities=19% Similarity=0.145 Sum_probs=79.9
Q ss_pred CCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCCC--CCC-ceeEE
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTWC--PTE-LFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~~--~~~-~fD~i 178 (231)
..+++||-||.|.|..+..+++.. .+++.+|+++.+++.|++.+.... .+++++++.+|...+. ..+ +||+|
T Consensus 75 ~~p~~VLiiGgG~G~~~~ell~~~~~~~i~~VEiD~~Vv~~a~~~f~~~~~~~~d~r~~i~~~Dg~~~l~~~~~~~yDvI 154 (246)
T PF01564_consen 75 PNPKRVLIIGGGDGGTARELLKHPPVESITVVEIDPEVVELARKYFPEFSEGLDDPRVRIIIGDGRKFLKETQEEKYDVI 154 (246)
T ss_dssp SST-EEEEEESTTSHHHHHHTTSTT-SEEEEEES-HHHHHHHHHHTHHHHTTGGSTTEEEEESTHHHHHHTSSST-EEEE
T ss_pred CCcCceEEEcCCChhhhhhhhhcCCcceEEEEecChHHHHHHHHhchhhccccCCCceEEEEhhhHHHHHhccCCcccEE
Confidence 356899999999999999999833 599999999999999999765421 2468999999998832 223 89999
Q ss_pred EeCCcccccChH--HHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 179 FDYTFFCAIEPE--MRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 179 ~~~~~~~~~~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+.-..-...+.. ....+++.+.++|+|||++++..-++
T Consensus 155 i~D~~dp~~~~~~l~t~ef~~~~~~~L~~~Gv~v~~~~~~ 194 (246)
T PF01564_consen 155 IVDLTDPDGPAPNLFTREFYQLCKRRLKPDGVLVLQAGSP 194 (246)
T ss_dssp EEESSSTTSCGGGGSSHHHHHHHHHHEEEEEEEEEEEEET
T ss_pred EEeCCCCCCCcccccCHHHHHHHHhhcCCCcEEEEEccCc
Confidence 974332111111 12578999999999999998765333
No 203
>COG0421 SpeE Spermidine synthase [Amino acid transport and metabolism]
Probab=98.71 E-value=1.7e-07 Score=76.20 Aligned_cols=102 Identities=21% Similarity=0.235 Sum_probs=81.3
Q ss_pred CcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCC--C-CCceEEEEccCCCCCC--CCceeEEEeCC
Q 026903 110 GRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLP--N-AKFVSFLKADFFTWCP--TELFDLIFDYT 182 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~--~-~~~i~~~~~d~~~~~~--~~~fD~i~~~~ 182 (231)
++||-||.|.|..++.+++.. .+++.+|++++.++.+++.+.... . ++|+.++..|..++.. ..+||+|++..
T Consensus 78 k~VLiiGgGdG~tlRevlkh~~ve~i~~VEID~~Vi~~ar~~l~~~~~~~~dpRv~i~i~Dg~~~v~~~~~~fDvIi~D~ 157 (282)
T COG0421 78 KRVLIIGGGDGGTLREVLKHLPVERITMVEIDPAVIELARKYLPEPSGGADDPRVEIIIDDGVEFLRDCEEKFDVIIVDS 157 (282)
T ss_pred CeEEEECCCccHHHHHHHhcCCcceEEEEEcCHHHHHHHHHhccCcccccCCCceEEEeccHHHHHHhCCCcCCEEEEcC
Confidence 699999999999999999944 599999999999999999876543 2 4789999999998432 33799999754
Q ss_pred cccccCh-H--HHHHHHHHHHhhcCCCcEEEEE
Q 026903 183 FFCAIEP-E--MRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 183 ~~~~~~~-~--~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
.-. ..+ + .-..+++.+.++|+++|++++.
T Consensus 158 tdp-~gp~~~Lft~eFy~~~~~~L~~~Gi~v~q 189 (282)
T COG0421 158 TDP-VGPAEALFTEEFYEGCRRALKEDGIFVAQ 189 (282)
T ss_pred CCC-CCcccccCCHHHHHHHHHhcCCCcEEEEe
Confidence 433 111 1 1267899999999999998776
No 204
>TIGR00478 tly hemolysin TlyA family protein. Hemolysins are exotoxins that attack blood cell membranes and cause cell rupture, often by forming a pore in the membrane. At least two members of this protein family have been characterized indirectly as pore-forming hemolysins, one from the spirochete Serpula (Treponema) hyodysenteriae and one from Mycobacterium tuberculosis. However, homology domains in this protein suggest methyltransferase activity (pfam01728) and RNA-binding activity (pfam01479).
Probab=98.71 E-value=1.3e-07 Score=74.66 Aligned_cols=100 Identities=15% Similarity=0.117 Sum_probs=64.6
Q ss_pred HHHHHHHHcCC--CCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHH-HHHHhccCCCCCce-EEEEccCCC--
Q 026903 96 PIIVHLHQSGA--LPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKK-AEELSSSLPNAKFV-SFLKADFFT-- 168 (231)
Q Consensus 96 ~~~~~~~~~~~--~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~-a~~~~~~~~~~~~i-~~~~~d~~~-- 168 (231)
..+..++.... .++.+|||+|||+|.++..+++.|. +|+++|+++.++.. .+++. ++ .+...|+..
T Consensus 61 ~kL~~~l~~~~~~~~~~~vlDiG~gtG~~t~~l~~~ga~~v~avD~~~~~l~~~l~~~~-------~v~~~~~~ni~~~~ 133 (228)
T TIGR00478 61 EKLKEALEEFNIDVKNKIVLDVGSSTGGFTDCALQKGAKEVYGVDVGYNQLAEKLRQDE-------RVKVLERTNIRYVT 133 (228)
T ss_pred HHHHHHHHhcCCCCCCCEEEEcccCCCHHHHHHHHcCCCEEEEEeCCHHHHHHHHhcCC-------CeeEeecCCcccCC
Confidence 33555555543 3567999999999999999999875 89999999977765 33221 22 123333332
Q ss_pred ---CCC-CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 169 ---WCP-TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 169 ---~~~-~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
..+ -..+|++|++..+ .+..+.++|+| |.+++.-
T Consensus 134 ~~~~~~d~~~~DvsfiS~~~----------~l~~i~~~l~~-~~~~~L~ 171 (228)
T TIGR00478 134 PADIFPDFATFDVSFISLIS----------ILPELDLLLNP-NDLTLLF 171 (228)
T ss_pred HhHcCCCceeeeEEEeehHh----------HHHHHHHHhCc-CeEEEEc
Confidence 111 1257777743332 46788999999 8765543
No 205
>PF02527 GidB: rRNA small subunit methyltransferase G; InterPro: IPR003682 This entry represents a rRNA small subunit methyltransferase G. Previously identified as a glucose-inhibited division protein B that appears to be present and in a single copy in all complete eubacterial genomes so far sequenced. Specifically methylates the N7 position of a guanosine in 16S rRNA [, , ].; GO: 0008649 rRNA methyltransferase activity, 0006364 rRNA processing, 0005737 cytoplasm; PDB: 1XDZ_A 3G88_A 3G8A_B 3G89_B 3G8B_B 1JSX_A.
Probab=98.71 E-value=5.4e-08 Score=74.41 Aligned_cols=96 Identities=20% Similarity=0.225 Sum_probs=76.7
Q ss_pred CcEEEecCCCchHHHHhc--CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccccc
Q 026903 110 GRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAI 187 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~--~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~ 187 (231)
.+++|+|+|.|.-++.++ .+..+++.+|.+.+-+.+.++.....++. +++++++.+++......||+|+++.+-..
T Consensus 50 ~~~lDiGSGaGfPGipLaI~~p~~~~~LvEs~~KK~~FL~~~~~~L~L~-nv~v~~~R~E~~~~~~~fd~v~aRAv~~l- 127 (184)
T PF02527_consen 50 KKVLDIGSGAGFPGIPLAIARPDLQVTLVESVGKKVAFLKEVVRELGLS-NVEVINGRAEEPEYRESFDVVTARAVAPL- 127 (184)
T ss_dssp SEEEEETSTTTTTHHHHHHH-TTSEEEEEESSHHHHHHHHHHHHHHT-S-SEEEEES-HHHTTTTT-EEEEEEESSSSH-
T ss_pred ceEEecCCCCCChhHHHHHhCCCCcEEEEeCCchHHHHHHHHHHHhCCC-CEEEEEeeecccccCCCccEEEeehhcCH-
Confidence 389999999998777665 47889999999999999988877776654 69999999999555678999999887432
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 188 EPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
..++..+...+++||.+++.
T Consensus 128 -----~~l~~~~~~~l~~~G~~l~~ 147 (184)
T PF02527_consen 128 -----DKLLELARPLLKPGGRLLAY 147 (184)
T ss_dssp -----HHHHHHHGGGEEEEEEEEEE
T ss_pred -----HHHHHHHHHhcCCCCEEEEE
Confidence 46788899999999998764
No 206
>COG0030 KsgA Dimethyladenosine transferase (rRNA methylation) [Translation, ribosomal structure and biogenesis]
Probab=98.69 E-value=2.6e-07 Score=73.87 Aligned_cols=93 Identities=13% Similarity=0.126 Sum_probs=73.3
Q ss_pred cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903 95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
...+..++..... ++..|||||+|.|.++..|++.+..|+++|+++.++...++..... ++++++++|+.......
T Consensus 16 ~~v~~kIv~~a~~~~~d~VlEIGpG~GaLT~~Ll~~~~~v~aiEiD~~l~~~L~~~~~~~---~n~~vi~~DaLk~d~~~ 92 (259)
T COG0030 16 KNVIDKIVEAANISPGDNVLEIGPGLGALTEPLLERAARVTAIEIDRRLAEVLKERFAPY---DNLTVINGDALKFDFPS 92 (259)
T ss_pred HHHHHHHHHhcCCCCCCeEEEECCCCCHHHHHHHhhcCeEEEEEeCHHHHHHHHHhcccc---cceEEEeCchhcCcchh
Confidence 5557777776643 4589999999999999999999999999999999999999987633 57999999999954433
Q ss_pred --ceeEEEeCCcccccChHH
Q 026903 174 --LFDLIFDYTFFCAIEPEM 191 (231)
Q Consensus 174 --~fD~i~~~~~~~~~~~~~ 191 (231)
.++.|+++..++ ++.+.
T Consensus 93 l~~~~~vVaNlPY~-Isspi 111 (259)
T COG0030 93 LAQPYKVVANLPYN-ISSPI 111 (259)
T ss_pred hcCCCEEEEcCCCc-ccHHH
Confidence 678888765443 44333
No 207
>KOG1331 consensus Predicted methyltransferase [General function prediction only]
Probab=98.64 E-value=7.9e-08 Score=76.79 Aligned_cols=114 Identities=18% Similarity=0.294 Sum_probs=88.3
Q ss_pred cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCC
Q 026903 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~ 173 (231)
-+....++..... +..++|+|||.|.....- +...++|+|++...+..++..-. .....+|+.+ +.+..
T Consensus 33 Wp~v~qfl~~~~~-gsv~~d~gCGngky~~~~--p~~~~ig~D~c~~l~~~ak~~~~-------~~~~~ad~l~~p~~~~ 102 (293)
T KOG1331|consen 33 WPMVRQFLDSQPT-GSVGLDVGCGNGKYLGVN--PLCLIIGCDLCTGLLGGAKRSGG-------DNVCRADALKLPFREE 102 (293)
T ss_pred cHHHHHHHhccCC-cceeeecccCCcccCcCC--CcceeeecchhhhhccccccCCC-------ceeehhhhhcCCCCCC
Confidence 3456666665433 679999999999765322 55579999999998887765321 1467788888 66778
Q ss_pred ceeEEEeCCcccccCh-HHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 174 LFDLIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 174 ~fD~i~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
+||..++..++||+.. .-+..+++++.++|+|||..++..|+.+.
T Consensus 103 s~d~~lsiavihhlsT~~RR~~~l~e~~r~lrpgg~~lvyvwa~~q 148 (293)
T KOG1331|consen 103 SFDAALSIAVIHHLSTRERRERALEELLRVLRPGGNALVYVWALEQ 148 (293)
T ss_pred ccccchhhhhhhhhhhHHHHHHHHHHHHHHhcCCCceEEEEehhhc
Confidence 9999999999999975 56689999999999999998888876653
No 208
>KOG0820 consensus Ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=98.63 E-value=3.5e-07 Score=72.55 Aligned_cols=87 Identities=23% Similarity=0.256 Sum_probs=72.3
Q ss_pred HHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc
Q 026903 96 PIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL 174 (231)
Q Consensus 96 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~ 174 (231)
..+..+++.... ++..|||+|.|+|.++..|++.|.+|+++|+++.++....++.+..+...+.+++.+|.....- -.
T Consensus 45 ~v~~~I~~ka~~k~tD~VLEvGPGTGnLT~~lLe~~kkVvA~E~Dprmvael~krv~gtp~~~kLqV~~gD~lK~d~-P~ 123 (315)
T KOG0820|consen 45 LVIDQIVEKADLKPTDVVLEVGPGTGNLTVKLLEAGKKVVAVEIDPRMVAELEKRVQGTPKSGKLQVLHGDFLKTDL-PR 123 (315)
T ss_pred HHHHHHHhccCCCCCCEEEEeCCCCCHHHHHHHHhcCeEEEEecCcHHHHHHHHHhcCCCccceeeEEecccccCCC-cc
Confidence 345556665544 5589999999999999999999999999999999999999999887777889999999998542 25
Q ss_pred eeEEEeCCc
Q 026903 175 FDLIFDYTF 183 (231)
Q Consensus 175 fD~i~~~~~ 183 (231)
||.++++..
T Consensus 124 fd~cVsNlP 132 (315)
T KOG0820|consen 124 FDGCVSNLP 132 (315)
T ss_pred cceeeccCC
Confidence 899987543
No 209
>KOG2915 consensus tRNA(1-methyladenosine) methyltransferase, subunit GCD14 [Translation, ribosomal structure and biogenesis]
Probab=98.62 E-value=3.5e-07 Score=72.50 Aligned_cols=104 Identities=19% Similarity=0.094 Sum_probs=78.7
Q ss_pred HHHHHHcC-CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CC
Q 026903 98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WC 170 (231)
Q Consensus 98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~ 170 (231)
+..++..+ ..|+.+|||-|.|+|.++.++++ +-.+++.+|+.+...+.|.+.+.+.++.+++++.+-|+-. ..
T Consensus 94 ia~I~~~L~i~PGsvV~EsGTGSGSlShaiaraV~ptGhl~tfefH~~Ra~ka~eeFr~hgi~~~vt~~hrDVc~~GF~~ 173 (314)
T KOG2915|consen 94 IAMILSMLEIRPGSVVLESGTGSGSLSHAIARAVAPTGHLYTFEFHETRAEKALEEFREHGIGDNVTVTHRDVCGSGFLI 173 (314)
T ss_pred HHHHHHHhcCCCCCEEEecCCCcchHHHHHHHhhCcCcceEEEEecHHHHHHHHHHHHHhCCCcceEEEEeecccCCccc
Confidence 44444444 45678999999999999999988 4458999999999999999999999999999999999988 22
Q ss_pred CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcE
Q 026903 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGE 208 (231)
Q Consensus 171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~ 208 (231)
....+|.|+....-.| .++-.+...||.+|.
T Consensus 174 ks~~aDaVFLDlPaPw-------~AiPha~~~lk~~g~ 204 (314)
T KOG2915|consen 174 KSLKADAVFLDLPAPW-------EAIPHAAKILKDEGG 204 (314)
T ss_pred cccccceEEEcCCChh-------hhhhhhHHHhhhcCc
Confidence 3568999995433222 123444556677664
No 210
>TIGR03439 methyl_EasF probable methyltransferase domain, EasF family. This model represents an uncharacterized domain of about 300 amino acids with homology to S-adenosylmethionine-dependent methyltransferases. Proteins with this domain are exclusively fungal. A few, such as EasF from Neotyphodium lolii, are associated with the biosynthesis of ergot alkaloids, a class of fungal secondary metabolites. EasF may, in fact, be the AdoMet:dimethylallyltryptophan N-methyltransferase, the enzyme that follows tryptophan dimethylallyltransferase (DMATS) in ergot alkaloid biosynthesis. Several other members of this family, including mug158 (meiotically up-regulated gene 158 protein) from Schizosaccharomyces pombe, contain an additional uncharacterized domain DUF323 (pfam03781).
Probab=98.62 E-value=5.8e-07 Score=74.49 Aligned_cols=103 Identities=12% Similarity=0.001 Sum_probs=77.7
Q ss_pred CCCcEEEecCCCchHHHHhcC------CCCeEEEEeCChHHHHHHHHHhccCCCCCce--EEEEccCCCC---CC----C
Q 026903 108 PKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFV--SFLKADFFTW---CP----T 172 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i--~~~~~d~~~~---~~----~ 172 (231)
++..++|+|||+|.-+..|++ ....++++|+|..+++.+.+++..... +.+ .-+.+|..+. .+ .
T Consensus 76 ~~~~lIELGsG~~~Kt~~LL~aL~~~~~~~~Y~plDIS~~~L~~a~~~L~~~~~-p~l~v~~l~gdy~~~l~~l~~~~~~ 154 (319)
T TIGR03439 76 SGSMLVELGSGNLRKVGILLEALERQKKSVDYYALDVSRSELQRTLAELPLGNF-SHVRCAGLLGTYDDGLAWLKRPENR 154 (319)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHhcCCCceEEEEECCHHHHHHHHHhhhhccC-CCeEEEEEEecHHHHHhhccccccc
Confidence 345899999999988766554 245899999999999999988762211 234 4488888762 21 2
Q ss_pred CceeEEEeC-CcccccChHHHHHHHHHHHh-hcCCCcEEEE
Q 026903 173 ELFDLIFDY-TFFCAIEPEMRAAWAQKIKD-FLKPDGELIT 211 (231)
Q Consensus 173 ~~fD~i~~~-~~~~~~~~~~~~~~l~~~~~-~L~pgG~l~~ 211 (231)
....+++.. .++.+++++....+|+.+++ .|+|||.|++
T Consensus 155 ~~~r~~~flGSsiGNf~~~ea~~fL~~~~~~~l~~~d~lLi 195 (319)
T TIGR03439 155 SRPTTILWLGSSIGNFSRPEAAAFLAGFLATALSPSDSFLI 195 (319)
T ss_pred CCccEEEEeCccccCCCHHHHHHHHHHHHHhhCCCCCEEEE
Confidence 245666665 47899999999999999999 9999998766
No 211
>TIGR00308 TRM1 tRNA(guanine-26,N2-N2) methyltransferase. This enzyme is responsible for two methylations of a characteristic guanine of most tRNA molecules. The activity has been demonstrated for eukaryotic and archaeal proteins, which are active when expressed in E. coli, a species that lacks this enzyme. At least one Eubacterium, Aquifex aeolicus, has an ortholog, as do all completed archaeal genomes.
Probab=98.61 E-value=9.8e-08 Score=80.84 Aligned_cols=97 Identities=13% Similarity=0.040 Sum_probs=78.8
Q ss_pred CcEEEecCCCchHHHHhcCC--C-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeCCcc
Q 026903 110 GRALVPGCGTGYDVVAMASP--E-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDYTFF 184 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~--~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~~~~ 184 (231)
.+|||+.||+|..++.++.. | .+|+++|+++.+++.+++|+..++.. ++.+++.|+..... ...||+|+... +
T Consensus 46 ~~vLD~faGsG~rgir~a~e~~ga~~Vv~nD~n~~Av~~i~~N~~~N~~~-~~~v~~~Da~~~l~~~~~~fDvIdlDP-f 123 (374)
T TIGR00308 46 INIADALSASGIRAIRYAHEIEGVREVFANDINPKAVESIKNNVEYNSVE-NIEVPNEDAANVLRYRNRKFHVIDIDP-F 123 (374)
T ss_pred CEEEECCCchhHHHHHHHhhCCCCCEEEEEeCCHHHHHHHHHHHHHhCCC-cEEEEchhHHHHHHHhCCCCCEEEeCC-C
Confidence 58999999999999999985 4 38999999999999999999776543 58899999888432 35799998644 3
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
. .+ ..+++.+.+.+++||.|++..
T Consensus 124 G-s~----~~fld~al~~~~~~glL~vTa 147 (374)
T TIGR00308 124 G-TP----APFVDSAIQASAERGLLLVTA 147 (374)
T ss_pred C-Cc----HHHHHHHHHhcccCCEEEEEe
Confidence 2 21 368899999999999998874
No 212
>PF09243 Rsm22: Mitochondrial small ribosomal subunit Rsm22; InterPro: IPR015324 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Rsm22 has been identified as a mitochondrial small ribosomal subunit [] and is a methyltransferase. In Schizosaccharomyces pombe (Fission yeast), Rsm22 is tandemly fused to Cox11 (a factor required for copper insertion into cytochrome oxidase) and the two proteins are proteolytically cleaved after import into the mitochondria []. This entry consists of mitochondrial Rsm22 and homologous sequences from bacteria.; GO: 0008168 methyltransferase activity, 0006412 translation
Probab=98.59 E-value=5e-07 Score=73.69 Aligned_cols=107 Identities=17% Similarity=0.176 Sum_probs=74.7
Q ss_pred CCCCcEEEecCCCchHHHHhcC--C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~ 183 (231)
..+.+|||+|||.|..+..+.+ + -.+++++|.|+.+++.++.............+......+..+-...|+|++.++
T Consensus 32 f~P~~vLD~GsGpGta~wAa~~~~~~~~~~~~vd~s~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~DLvi~s~~ 111 (274)
T PF09243_consen 32 FRPRSVLDFGSGPGTALWAAREVWPSLKEYTCVDRSPEMLELAKRLLRAGPNNRNAEWRRVLYRDFLPFPPDDLVIASYV 111 (274)
T ss_pred CCCceEEEecCChHHHHHHHHHHhcCceeeeeecCCHHHHHHHHHHHhcccccccchhhhhhhcccccCCCCcEEEEehh
Confidence 4557999999999987766655 2 338999999999999999876554311111111111111122224499999999
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
+.-++...+..+++.+.+.+++ .|++++..
T Consensus 112 L~EL~~~~r~~lv~~LW~~~~~--~LVlVEpG 141 (274)
T PF09243_consen 112 LNELPSAARAELVRSLWNKTAP--VLVLVEPG 141 (274)
T ss_pred hhcCCchHHHHHHHHHHHhccC--cEEEEcCC
Confidence 9999888888999999888877 77777643
No 213
>PRK11783 rlmL 23S rRNA m(2)G2445 methyltransferase; Provisional
Probab=98.57 E-value=7.3e-07 Score=81.84 Aligned_cols=107 Identities=17% Similarity=0.144 Sum_probs=79.6
Q ss_pred CCCcEEEecCCCchHHHHhcC------CC--------------------------------------CeEEEEeCChHHH
Q 026903 108 PKGRALVPGCGTGYDVVAMAS------PE--------------------------------------RYVVGLEISDIAI 143 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~------~~--------------------------------------~~v~~iD~s~~~i 143 (231)
++..++|.+||+|.+.+..+. +| .+++|+|++++++
T Consensus 190 ~~~~l~DP~CGSGTilIEAa~~~~~~~pg~~r~~f~f~~~~~~~~~~w~~~~~~a~~~~~~~~~~~~~~i~G~Did~~av 269 (702)
T PRK11783 190 EGTPLLDPMCGSGTLLIEAAMMAADIAPGLHRERWGFSGWLGHDEALWQELLEEAQERARAGLAELPSKFYGSDIDPRVI 269 (702)
T ss_pred CCCeEEccCCCccHHHHHHHHHHhcCCCCccccccccccCCCCCHHHHHHHHHHHHHHHhhcccccCceEEEEECCHHHH
Confidence 458999999999999877753 11 2689999999999
Q ss_pred HHHHHHhccCCCCCceEEEEccCCCCCC---CCceeEEEeCCcccc-cC-hHHHHHHHHHHHhhcC---CCcEEEEEEc
Q 026903 144 KKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYTFFCA-IE-PEMRAAWAQKIKDFLK---PDGELITLMF 214 (231)
Q Consensus 144 ~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~fD~i~~~~~~~~-~~-~~~~~~~l~~~~~~L~---pgG~l~~~~~ 214 (231)
+.|++|+...++.+.++|.++|+.+... .++||+|+++..+.. +. ......+.+.+.+.++ +|+.+++.+-
T Consensus 270 ~~A~~N~~~~g~~~~i~~~~~D~~~~~~~~~~~~~d~IvtNPPYg~r~~~~~~l~~lY~~lg~~lk~~~~g~~~~llt~ 348 (702)
T PRK11783 270 QAARKNARRAGVAELITFEVKDVADLKNPLPKGPTGLVISNPPYGERLGEEPALIALYSQLGRRLKQQFGGWNAALFSS 348 (702)
T ss_pred HHHHHHHHHcCCCcceEEEeCChhhcccccccCCCCEEEECCCCcCccCchHHHHHHHHHHHHHHHHhCCCCeEEEEeC
Confidence 9999999998888889999999988432 246999999976543 22 2333444444444444 8888877654
No 214
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=98.55 E-value=7.4e-08 Score=82.63 Aligned_cols=102 Identities=15% Similarity=0.189 Sum_probs=71.8
Q ss_pred CcEEEecCCCchHHHHhcCCCCeEEEE---eCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903 110 GRALVPGCGTGYDVVAMASPERYVVGL---EISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~~v~~i---D~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~ 186 (231)
..+||+|||+|.++..|.+++.....+ |..+..+++|.++.-. .-+. .-+.-.-+++...||+|.|..++..
T Consensus 119 R~~LDvGcG~aSF~a~l~~r~V~t~s~a~~d~~~~qvqfaleRGvp----a~~~-~~~s~rLPfp~~~fDmvHcsrc~i~ 193 (506)
T PF03141_consen 119 RTALDVGCGVASFGAYLLERNVTTMSFAPNDEHEAQVQFALERGVP----AMIG-VLGSQRLPFPSNAFDMVHCSRCLIP 193 (506)
T ss_pred EEEEeccceeehhHHHHhhCCceEEEcccccCCchhhhhhhhcCcc----hhhh-hhccccccCCccchhhhhccccccc
Confidence 589999999999999999988766555 4445566666655311 1111 1122233788899999999988766
Q ss_pred cChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 187 IEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
..+.+ ..+|-++.|+|+|||+++...-+.+
T Consensus 194 W~~~~-g~~l~evdRvLRpGGyfv~S~ppv~ 223 (506)
T PF03141_consen 194 WHPND-GFLLFEVDRVLRPGGYFVLSGPPVY 223 (506)
T ss_pred chhcc-cceeehhhhhhccCceEEecCCccc
Confidence 54333 4588999999999999987665544
No 215
>COG0116 Predicted N6-adenine-specific DNA methylase [DNA replication, recombination, and repair]
Probab=98.55 E-value=1.1e-06 Score=73.60 Aligned_cols=109 Identities=16% Similarity=0.217 Sum_probs=85.8
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCC-----------------------------------------eEEEEeCChHHHH
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPER-----------------------------------------YVVGLEISDIAIK 144 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-----------------------------------------~v~~iD~s~~~i~ 144 (231)
..++..++|.-||+|.+.+..|..+. .++|+|+++.+++
T Consensus 189 w~~~~pl~DPmCGSGTi~IEAAl~~~niAPg~~R~~~f~~w~~~~~~lw~~~~~ea~~~a~~~~~~~~~~G~Did~r~i~ 268 (381)
T COG0116 189 WKPDEPLLDPMCGSGTILIEAALIAANIAPGLNRRFGFEFWDWFDKDLWDKLREEAEERARRGKELPIIYGSDIDPRHIE 268 (381)
T ss_pred CCCCCccccCCCCccHHHHHHHHhccccCCccccccchhhhhhccHHHHHHHHHHHHHHHhhcCccceEEEecCCHHHHH
Confidence 34447999999999999988876332 3789999999999
Q ss_pred HHHHHhccCCCCCceEEEEccCCCCCCC-CceeEEEeCCcccc-cCh-----HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 145 KAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYTFFCA-IEP-----EMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 145 ~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD~i~~~~~~~~-~~~-----~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.|+.|....++.+.|+|.++|+..+.+. +.+|+|+|+..+.- +.. .....+.+.+++.++--+..++++.
T Consensus 269 ~Ak~NA~~AGv~d~I~f~~~d~~~l~~~~~~~gvvI~NPPYGeRlg~~~~v~~LY~~fg~~lk~~~~~ws~~v~tt~ 345 (381)
T COG0116 269 GAKANARAAGVGDLIEFKQADATDLKEPLEEYGVVISNPPYGERLGSEALVAKLYREFGRTLKRLLAGWSRYVFTTS 345 (381)
T ss_pred HHHHHHHhcCCCceEEEEEcchhhCCCCCCcCCEEEeCCCcchhcCChhhHHHHHHHHHHHHHHHhcCCceEEEEcc
Confidence 9999999999999999999999996655 78999999876532 222 1335666677788888787777654
No 216
>PF01234 NNMT_PNMT_TEMT: NNMT/PNMT/TEMT family; InterPro: IPR000940 Methyl transfer from the ubiquitous S-adenosyl-L-methionine (AdoMet) to either nitrogen, oxygen or carbon atoms is frequently employed in diverse organisms ranging from bacteria to plants and mammals. The reaction is catalysed by methyltransferases (Mtases) and modifies DNA, RNA, proteins and small molecules, such as catechol for regulatory purposes. The various aspects of the role of DNA methylation in prokaryotic restriction-modification systems and in a number of cellular processes in eukaryotes including gene regulation and differentiation is well documented. Three classes of DNA Mtases transfer the methyl group from AdoMet to the target base to form either N-6-methyladenine, or N-4-methylcytosine, or C-5- methylcytosine. In C-5-cytosine Mtases, ten conserved motifs are arranged in the same order []. Motif I (a glycine-rich or closely related consensus sequence; FAGxGG in M.HhaI []), shared by other AdoMet-Mtases [], is part of the cofactor binding site and motif IV (PCQ) is part of the catalytic site. In contrast, sequence comparison among N-6-adenine and N-4-cytosine Mtases indicated two of the conserved segments [], although more conserved segments may be present. One of them corresponds to motif I in C-5-cytosine Mtases, and the other is named (D/N/S)PP(Y/F). Crystal structures are known for a number of Mtases [, , , ]. The cofactor binding sites are almost identical and the essential catalytic amino acids coincide. The comparable protein folding and the existence of equivalent amino acids in similar secondary and tertiary positions indicate that many (if not all) AdoMet-Mtases have a common catalytic domain structure. This permits tertiary structure prediction of other DNA, RNA, protein, and small-molecule AdoMet-Mtases from their amino acid sequences []. Several cytoplasmic vertebrate methyltransferases are evolutionary related [], including nicotinamide N-methyltransferase (2.1.1.1 from EC) (NNMT); phenylethanolamine N-methyltransferase (2.1.1.28 from EC) (PNMT); and thioether S-methyltransferase (2.1.1.96 from EC) (TEMT). NNMT catalyzes the N-methylation of nicotinamide and other pyridines to form pyridinium ions. This activity is important for the biotransformation of many drugs and xenobiotic compounds. PNMT catalyzes the last step in catecholamine biosynthesis, the conversion of noradrenalin to adrenalin; and TEMT catalyzes the methylation of dimethyl sulphide into trimethylsulphonium. These three enzymes use S-adenosyl-L-methionine as the methyl donor. They are proteins of 30 to 32 kDa.; GO: 0008168 methyltransferase activity; PDB: 2IIP_C 3ROD_A 2OBF_A 3HCA_B 2ONY_B 3KR1_A 2OPB_B 3KQP_B 2AN4_B 3KQM_A ....
Probab=98.54 E-value=4.3e-07 Score=72.75 Aligned_cols=110 Identities=16% Similarity=0.057 Sum_probs=73.6
Q ss_pred CCCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCC---------------------------CCC
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLP---------------------------NAK 157 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~---------------------------~~~ 157 (231)
...+.++||||||.-.....-+. ...+++..|+.+..++..++-+...+ ...
T Consensus 54 ~~~g~~llDiGsGPtiy~~lsa~~~f~~I~l~dy~~~N~~el~kWl~~~~a~DWs~~~~~v~~lEg~~~~~~e~e~~lR~ 133 (256)
T PF01234_consen 54 GVKGETLLDIGSGPTIYQLLSACEWFEEIVLSDYSEQNREELEKWLRKEGAFDWSPFWKYVCELEGKREKWEEKEEKLRR 133 (256)
T ss_dssp SS-EEEEEEES-TT--GGGTTGGGTEEEEEEEESSHHHHHHHHHHHTT-TS--THHHHHHHHHHTTSSSGHHHHHHHHHH
T ss_pred CcCCCEEEEeCCCcHHHhhhhHHHhhcceEEeeccHhhHHHHHHHHCCCCCCCccHHHHHHHhccCCcchhhhHHHHHHH
Confidence 34557999999999655433333 34489999999998876665443322 001
Q ss_pred ce-EEEEccCCCCC--CC-----CceeEEEeCCcccccC--hHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 158 FV-SFLKADFFTWC--PT-----ELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 158 ~i-~~~~~d~~~~~--~~-----~~fD~i~~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
.| .++.+|+.+.. .. .+||+|++.++++... .+.....++++.++|||||.|++...-
T Consensus 134 ~Vk~Vv~cDV~~~~pl~~~~~~p~~~D~v~s~fcLE~a~~d~~~y~~al~ni~~lLkpGG~Lil~~~l 201 (256)
T PF01234_consen 134 AVKQVVPCDVTQPNPLDPPVVLPPKFDCVISSFCLESACKDLDEYRRALRNISSLLKPGGHLILAGVL 201 (256)
T ss_dssp HEEEEEE--TTSSSTTTTS-SS-SSEEEEEEESSHHHH-SSHHHHHHHHHHHHTTEEEEEEEEEEEES
T ss_pred hhceEEEeeccCCCCCCccccCccchhhhhhhHHHHHHcCCHHHHHHHHHHHHHHcCCCcEEEEEEEc
Confidence 23 37889998832 22 2499999999988764 367789999999999999999887653
No 217
>PF08123 DOT1: Histone methylation protein DOT1 ; InterPro: IPR013110 The DOT1 domain regulates gene expression by methylating histone H3 []. H3 methylation by DOT1 has been shown to be required for the DNA damage checkpoint in yeast [].; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 4ER3_A 4ER6_A 4EQZ_A 1NW3_A 3UWP_A 4ER5_A 3QOX_A 3SX0_A 4ER7_A 3SR4_A ....
Probab=98.53 E-value=4.4e-07 Score=70.60 Aligned_cols=114 Identities=22% Similarity=0.186 Sum_probs=70.3
Q ss_pred cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhcc-------CCC-CCceEEEE
Q 026903 95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSS-------LPN-AKFVSFLK 163 (231)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~-------~~~-~~~i~~~~ 163 (231)
...+..+++...+ ++...+|+|||.|......+- ...+.+|||+.+...+.|.+.... .+. ..++++.+
T Consensus 28 ~~~~~~il~~~~l~~~dvF~DlGSG~G~~v~~aal~~~~~~~~GIEi~~~~~~~a~~~~~~~~~~~~~~g~~~~~v~l~~ 107 (205)
T PF08123_consen 28 PEFVSKILDELNLTPDDVFYDLGSGVGNVVFQAALQTGCKKSVGIEILPELHDLAEELLEELKKRMKHYGKRPGKVELIH 107 (205)
T ss_dssp HHHHHHHHHHTT--TT-EEEEES-TTSHHHHHHHHHH--SEEEEEE-SHHHHHHHHHHHHHHHHHHHHCTB---EEEEEC
T ss_pred HHHHHHHHHHhCCCCCCEEEECCCCCCHHHHHHHHHcCCcEEEEEEechHHHHHHHHHHHHHHHHHHHhhcccccceeec
Confidence 3456677776654 458999999999999887775 344699999999988877653322 221 24688999
Q ss_pred ccCCCCCC----CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 164 ADFFTWCP----TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 164 ~d~~~~~~----~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
+|+.+... -...|+|++++.. +++ .....|.++...||+|.+++.
T Consensus 108 gdfl~~~~~~~~~s~AdvVf~Nn~~--F~~-~l~~~L~~~~~~lk~G~~IIs 156 (205)
T PF08123_consen 108 GDFLDPDFVKDIWSDADVVFVNNTC--FDP-DLNLALAELLLELKPGARIIS 156 (205)
T ss_dssp S-TTTHHHHHHHGHC-SEEEE--TT--T-H-HHHHHHHHHHTTS-TT-EEEE
T ss_pred cCccccHhHhhhhcCCCEEEEeccc--cCH-HHHHHHHHHHhcCCCCCEEEE
Confidence 99887321 1357999998775 443 444556777788999988764
No 218
>PF05958 tRNA_U5-meth_tr: tRNA (Uracil-5-)-methyltransferase; InterPro: IPR010280 This family consists of (uracil-5-)-methyltransferases 2.1.1.35 from EC from bacteria, archaea and eukaryotes. A 5-methyluridine (m(5)U) residue at position 54 is a conserved feature of bacterial and eukaryotic tRNAs. The methylation of U54 is catalysed by the tRNA(m5U54)methyltransferase, which in Saccharomyces cerevisiae is encoded by the nonessential TRM2 gene. It is thought that tRNA modification enzymes might have a role in tRNA maturation not necessarily linked to their known catalytic activity []. This protein family also contains the 23SrRNA methyltransferases, first proposed to be RNA methyltransferases by homology to the TrmA family. The member from Escherichia coli has now been shown to act as the 23S RNA methyltransferase for the conserved U1939. The gene is now designated rumA and was previously designated ygcA [].; GO: 0008173 RNA methyltransferase activity, 0006396 RNA processing; PDB: 2VS1_A 2JJQ_A 2BH2_A 1UWV_A 3BT7_B.
Probab=98.53 E-value=3.7e-07 Score=77.10 Aligned_cols=62 Identities=29% Similarity=0.375 Sum_probs=49.1
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 168 (231)
...+..|||+-||.|.+++.|++...+|+|+|.++.+++.|++++..+++ ++++|+.++..+
T Consensus 194 ~~~~~~vlDlycG~G~fsl~la~~~~~V~gvE~~~~av~~A~~Na~~N~i-~n~~f~~~~~~~ 255 (352)
T PF05958_consen 194 DLSKGDVLDLYCGVGTFSLPLAKKAKKVIGVEIVEEAVEDARENAKLNGI-DNVEFIRGDAED 255 (352)
T ss_dssp TT-TTEEEEES-TTTCCHHHHHCCSSEEEEEES-HHHHHHHHHHHHHTT---SEEEEE--SHH
T ss_pred hcCCCcEEEEeecCCHHHHHHHhhCCeEEEeeCCHHHHHHHHHHHHHcCC-CcceEEEeeccc
Confidence 33335899999999999999999999999999999999999999988875 469999877654
No 219
>COG3897 Predicted methyltransferase [General function prediction only]
Probab=98.52 E-value=6.8e-07 Score=67.64 Aligned_cols=119 Identities=20% Similarity=0.253 Sum_probs=87.5
Q ss_pred cchhhhhccCCCCCCCCCCcHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhcc
Q 026903 76 GGWEKCWEEGLTPWDIGQPAPIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSS 152 (231)
Q Consensus 76 ~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~ 152 (231)
-+|.-.|..+.. +.+++... ...+++|||+|+|+|..+...++.|. .|+..|+.+.......-|...
T Consensus 55 pfwa~~WagG~~----------lAR~i~~~PetVrgkrVLd~gagsgLvaIAaa~aGA~~v~a~d~~P~~~~ai~lNa~a 124 (218)
T COG3897 55 PFWAFAWAGGQV----------LARYIDDHPETVRGKRVLDLGAGSGLVAIAAARAGAAEVVAADIDPWLEQAIRLNAAA 124 (218)
T ss_pred hHHHHHHhhhHH----------HHHHHhcCccccccceeeecccccChHHHHHHHhhhHHHHhcCCChHHHHHhhcchhh
Confidence 477777765433 23333332 23468999999999999999999887 899999999999988888887
Q ss_pred CCCCCceEEEEccCCCCCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 153 LPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 153 ~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
+++ .|.|...|..- .+..||+++...+++.- +...+++. +.+.|+..|..++
T Consensus 125 ngv--~i~~~~~d~~g--~~~~~Dl~LagDlfy~~--~~a~~l~~-~~~~l~~~g~~vl 176 (218)
T COG3897 125 NGV--SILFTHADLIG--SPPAFDLLLAGDLFYNH--TEADRLIP-WKDRLAEAGAAVL 176 (218)
T ss_pred ccc--eeEEeeccccC--CCcceeEEEeeceecCc--hHHHHHHH-HHHHHHhCCCEEE
Confidence 763 48888888877 44579999998887654 45567777 5555566665443
No 220
>PF02384 N6_Mtase: N-6 DNA Methylase; InterPro: IPR003356 This domain is fpound in N-6 adenine-specific DNA methylase (2.1.1.72 from EC) from Type I and Type IC restriction systems. These enzymes are responsible for the methylation of specific DNA sequences in order to prevent the host from digesting its own genome via its restriction enzymes. These methylases have the same sequence specificity as their corresponding restriction enzymes. The type I restriction and modification system is composed of three polypeptides R, M and S. The M and S subunits together form a methyltransferase that methylates two adenine residues in complementary strands of a bipartite DNA recognition sequence. In the presence of the R subunit, the complex can also act as an endonuclease, binding to the same target sequence but cutting the DNA some distance from this site. Whether the DNA is cut or modified depends on the methylation state of the target sequence. When the target site is unmodified, the DNA is cut. When the target site is hemimethylated, the complex acts as a maintenance methyltransferase, modifying the DNA so that both strands become methylated.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2F8L_A 2Y7C_C 2Y7H_C 2AR0_B 3KHK_A 3LKD_A 2OKC_B.
Probab=98.52 E-value=5.2e-07 Score=75.04 Aligned_cols=120 Identities=21% Similarity=0.246 Sum_probs=76.0
Q ss_pred CcHHHHHHHHcC-CCCCCcEEEecCCCchHHHHhcC---------CCCeEEEEeCChHHHHHHHHHhccCCCC-CceEEE
Q 026903 94 PAPIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMAS---------PERYVVGLEISDIAIKKAEELSSSLPNA-KFVSFL 162 (231)
Q Consensus 94 ~~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~---------~~~~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~ 162 (231)
|.....-+.... ..++.+|+|.+||+|.+...+.+ ...+++|+|+++.++..|+-++.-.+.. ....+.
T Consensus 31 P~~i~~l~~~~~~~~~~~~VlDPacGsG~fL~~~~~~i~~~~~~~~~~~i~G~ei~~~~~~la~~nl~l~~~~~~~~~i~ 110 (311)
T PF02384_consen 31 PREIVDLMVKLLNPKKGDSVLDPACGSGGFLVAAMEYIKEKRNKIKEINIYGIEIDPEAVALAKLNLLLHGIDNSNINII 110 (311)
T ss_dssp -HHHHHHHHHHHTT-TTEEEEETT-TTSHHHHHHHHHHHTCHHHHCCEEEEEEES-HHHHHHHHHHHHHTTHHCBGCEEE
T ss_pred HHHHHHHHHhhhhccccceeechhhhHHHHHHHHHHhhcccccccccceeEeecCcHHHHHHHHhhhhhhcccccccccc
Confidence 344433333332 23446899999999999888765 4568999999999999998776544322 234688
Q ss_pred EccCCCC-C-C-CCceeEEEeCCccccc--C-h----------------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 163 KADFFTW-C-P-TELFDLIFDYTFFCAI--E-P----------------EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 163 ~~d~~~~-~-~-~~~fD~i~~~~~~~~~--~-~----------------~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
.+|.... . . ...||+|+++..+... . . ..--.++..+.+.|++||++.++.
T Consensus 111 ~~d~l~~~~~~~~~~~D~ii~NPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fi~~~l~~Lk~~G~~~~Il 183 (311)
T PF02384_consen 111 QGDSLENDKFIKNQKFDVIIGNPPFGSKEWKDEELEKDERFKKYFPPKSNAEYAFIEHALSLLKPGGRAAIIL 183 (311)
T ss_dssp ES-TTTSHSCTST--EEEEEEE--CTCES-STGGGCTTCCCTTCSSSTTEHHHHHHHHHHHTEEEEEEEEEEE
T ss_pred ccccccccccccccccccccCCCCccccccccccccccccccccCCCccchhhhhHHHHHhhcccccceeEEe
Confidence 8887762 2 2 4689999998654432 0 0 111358899999999999876654
No 221
>KOG1269 consensus SAM-dependent methyltransferases [Lipid transport and metabolism; General function prediction only]
Probab=98.51 E-value=1.2e-07 Score=79.71 Aligned_cols=110 Identities=24% Similarity=0.227 Sum_probs=91.2
Q ss_pred CCCCCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCc
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~ 183 (231)
..++..++|+|||.|.....++. .+..++|+|.++..+..+........+..+..+..+|+.+ ++++.+||.+.+..+
T Consensus 108 ~~~~~~~~~~~~g~~~~~~~i~~f~~~~~~Gl~~n~~e~~~~~~~~~~~~l~~k~~~~~~~~~~~~fedn~fd~v~~ld~ 187 (364)
T KOG1269|consen 108 CFPGSKVLDVGTGVGGPSRYIAVFKKAGVVGLDNNAYEAFRANELAKKAYLDNKCNFVVADFGKMPFEDNTFDGVRFLEV 187 (364)
T ss_pred CcccccccccCcCcCchhHHHHHhccCCccCCCcCHHHHHHHHHHHHHHHhhhhcceehhhhhcCCCCccccCcEEEEee
Confidence 44566899999999999999998 5579999999999888887765555455556677888888 678889999999999
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
..|.+ ....+++++.++++|||+.++.++...
T Consensus 188 ~~~~~--~~~~~y~Ei~rv~kpGG~~i~~e~i~~ 219 (364)
T KOG1269|consen 188 VCHAP--DLEKVYAEIYRVLKPGGLFIVKEWIKT 219 (364)
T ss_pred cccCC--cHHHHHHHHhcccCCCceEEeHHHHHh
Confidence 99984 557889999999999999998776543
No 222
>PF06962 rRNA_methylase: Putative rRNA methylase; InterPro: IPR010719 This family contains a number of putative rRNA methylases.; PDB: 3EEY_H 3LBY_A 3MTI_A.
Probab=98.50 E-value=4.8e-07 Score=65.52 Aligned_cols=83 Identities=17% Similarity=0.195 Sum_probs=60.9
Q ss_pred eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCCCceeEEEeCCcccccCh---------HHHHHHHHHH
Q 026903 132 YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPTELFDLIFDYTFFCAIEP---------EMRAAWAQKI 199 (231)
Q Consensus 132 ~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~~~fD~i~~~~~~~~~~~---------~~~~~~l~~~ 199 (231)
+|+++|+.+++++..++++...+..++++++..+..+ ..+.+++|+++. .+.++|. +.-.+.++.+
T Consensus 1 kVyaFDIQ~~Ai~~T~~rL~~~~~~~~v~li~~sHe~l~~~i~~~~v~~~iF--NLGYLPggDk~i~T~~~TTl~Al~~a 78 (140)
T PF06962_consen 1 KVYAFDIQEEAIENTRERLEEAGLEDRVTLILDSHENLDEYIPEGPVDAAIF--NLGYLPGGDKSITTKPETTLKALEAA 78 (140)
T ss_dssp EEEEEES-HHHHHHHHHHHHHTT-GSGEEEEES-GGGGGGT--S--EEEEEE--EESB-CTS-TTSB--HHHHHHHHHHH
T ss_pred CEEEEECHHHHHHHHHHHHHhcCCCCcEEEEECCHHHHHhhCccCCcCEEEE--ECCcCCCCCCCCCcCcHHHHHHHHHH
Confidence 5899999999999999999988777789999998887 333458999984 4444543 2336889999
Q ss_pred HhhcCCCcEEEEEEccC
Q 026903 200 KDFLKPDGELITLMFPI 216 (231)
Q Consensus 200 ~~~L~pgG~l~~~~~~~ 216 (231)
.++|+|||++.++.|+.
T Consensus 79 l~lL~~gG~i~iv~Y~G 95 (140)
T PF06962_consen 79 LELLKPGGIITIVVYPG 95 (140)
T ss_dssp HHHEEEEEEEEEEE--S
T ss_pred HHhhccCCEEEEEEeCC
Confidence 99999999999999875
No 223
>COG0500 SmtA SAM-dependent methyltransferases [Secondary metabolites biosynthesis, transport, and catabolism / General function prediction only]
Probab=98.49 E-value=5.1e-06 Score=60.99 Aligned_cols=103 Identities=24% Similarity=0.346 Sum_probs=71.5
Q ss_pred EEEecCCCchHH--HHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCC-CceeEEEeCCccc
Q 026903 112 ALVPGCGTGYDV--VAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT-ELFDLIFDYTFFC 185 (231)
Q Consensus 112 vLDiGcG~G~~~--~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~-~~fD~i~~~~~~~ 185 (231)
++|+|||+|... ..+...+..++++|+++.++..++..... .....+.+...+... .+.. ..||++......+
T Consensus 52 ~ld~~~g~g~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~ 130 (257)
T COG0500 52 VLDIGCGTGRLALLARLGGRGAYVVGVDLSPEMLALARARAEG-AGLGLVDFVVADALGGVLPFEDSASFDLVISLLVLH 130 (257)
T ss_pred eEEecCCcCHHHHHHHhCCCCceEEEEeCCHHHHHHHHhhhhh-cCCCceEEEEeccccCCCCCCCCCceeEEeeeeehh
Confidence 999999999965 33333335899999999999985554422 111115778877765 2333 3799994444444
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
+.. ....+..+.+.++|+|.+++.......
T Consensus 131 ~~~---~~~~~~~~~~~l~~~g~~~~~~~~~~~ 160 (257)
T COG0500 131 LLP---PAKALRELLRVLKPGGRLVLSDLLRDG 160 (257)
T ss_pred cCC---HHHHHHHHHHhcCCCcEEEEEeccCCC
Confidence 443 567899999999999999888776544
No 224
>PF01728 FtsJ: FtsJ-like methyltransferase; InterPro: IPR002877 RrmJ (FtsJ) is a well conserved heat shock protein present in prokaryotes, archaea, and eukaryotes. RrmJ is responsible for methylating 23 S rRNA at position U2552 in the aminoacyl (A)1-site of the ribosome []. U2552 is one of the five universally conserved A-loop residues and has been shown to be methylated at the ribose 2'-OH group in the majority of organisms investigated so far. This suggests that this modification plays an important role in the A-loop function. RrmJ recognises its methylation target only when the 23 S rRNA is present in 50 S ribosomal subunits. This suggests that the RrmJ-mediated methylation must occur late in the maturation process of the ribosome. This is in contrast to other known 23 S rRNA modifications that occur in earlier maturation steps. The 1.5 A crystal structure of RrmJ in complex with its cofactor S-adenosylmethionine revealed that RrmJ has a methyltransferase fold. The active site of RrmJ appears to be formed by a catalytic triad consisting of two lysine residues and the negatively charged aspartate residue. Another highly conserved glutamate residue that is present in the active site of RrmJ appears to play only a minor role in the methyltransfer reaction in vivo []. ; GO: 0003676 nucleic acid binding, 0008168 methyltransferase activity, 0032259 methylation; PDB: 3GCZ_A 2PLW_A 2NYU_A 2OXT_C 3EMD_A 3ELY_A 3ELW_A 3ELU_A 3ELD_A 3EMB_A ....
Probab=98.49 E-value=4.3e-07 Score=69.56 Aligned_cols=107 Identities=19% Similarity=0.216 Sum_probs=69.1
Q ss_pred HHHHHHcCC-C---CCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC-
Q 026903 98 IVHLHQSGA-L---PKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW- 169 (231)
Q Consensus 98 ~~~~~~~~~-~---~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~- 169 (231)
+.++.+... . ++.+|||+||++|.++..+++.+ .+|+|+|+.+. ... ..+.++++|+.+.
T Consensus 9 L~ei~~~~~~~~~~~~~~vlDlG~aPGGws~~~~~~~~~~~~v~avDl~~~---------~~~---~~~~~i~~d~~~~~ 76 (181)
T PF01728_consen 9 LYEIDEKFKIFKPGKGFTVLDLGAAPGGWSQVLLQRGGPAGRVVAVDLGPM---------DPL---QNVSFIQGDITNPE 76 (181)
T ss_dssp HHHHHHTTSSS-TTTTEEEEEET-TTSHHHHHHHTSTTTEEEEEEEESSST---------GS----TTEEBTTGGGEEEE
T ss_pred HHHHHHHCCCCCcccccEEEEcCCcccceeeeeeecccccceEEEEecccc---------ccc---cceeeeecccchhh
Confidence 445555543 2 23799999999999999999977 69999999876 110 2466666666551
Q ss_pred --------CC--CCceeEEEeCCccccc-----C----hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 170 --------CP--TELFDLIFDYTFFCAI-----E----PEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 170 --------~~--~~~fD~i~~~~~~~~~-----~----~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
.. .+.+|+|+|-.....- + .+.....+..+...|+|||.+++-.|..
T Consensus 77 ~~~~i~~~~~~~~~~~dlv~~D~~~~~~g~~~~d~~~~~~l~~~~l~~a~~~L~~gG~~v~K~~~~ 142 (181)
T PF01728_consen 77 NIKDIRKLLPESGEKFDLVLSDMAPNVSGDRNIDEFISIRLILSQLLLALELLKPGGTFVIKVFKG 142 (181)
T ss_dssp HSHHGGGSHGTTTCSESEEEE-------SSHHSSHHHHHHHHHHHHHHHHHHHCTTEEEEEEESSS
T ss_pred HHHhhhhhccccccCcceeccccccCCCCchhhHHHHHHHHHHHHHHHHHhhhcCCCEEEEEeccC
Confidence 11 2589999997632211 1 1233455566668899999999888874
No 225
>COG0357 GidB Predicted S-adenosylmethionine-dependent methyltransferase involved in bacterial cell division [Cell envelope biogenesis, outer membrane]
Probab=98.48 E-value=5.3e-07 Score=70.27 Aligned_cols=96 Identities=19% Similarity=0.204 Sum_probs=77.9
Q ss_pred CCcEEEecCCCchHHHHhc--CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCc-eeEEEeCCccc
Q 026903 109 KGRALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTEL-FDLIFDYTFFC 185 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~--~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~-fD~i~~~~~~~ 185 (231)
+.+++|||+|.|.-+..++ .+..+|+-+|...+-+.+.++...+.+++ |++++++.+++...... ||+|.++.+-.
T Consensus 68 ~~~~~DIGSGaGfPGipLAI~~p~~~vtLles~~Kk~~FL~~~~~eL~L~-nv~i~~~RaE~~~~~~~~~D~vtsRAva~ 146 (215)
T COG0357 68 AKRVLDIGSGAGFPGIPLAIAFPDLKVTLLESLGKKIAFLREVKKELGLE-NVEIVHGRAEEFGQEKKQYDVVTSRAVAS 146 (215)
T ss_pred CCEEEEeCCCCCCchhhHHHhccCCcEEEEccCchHHHHHHHHHHHhCCC-CeEEehhhHhhcccccccCcEEEeehccc
Confidence 5799999999999888866 47778999999999999998887776653 69999999999765445 99999887643
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
...++..+...+++||.+++
T Consensus 147 ------L~~l~e~~~pllk~~g~~~~ 166 (215)
T COG0357 147 ------LNVLLELCLPLLKVGGGFLA 166 (215)
T ss_pred ------hHHHHHHHHHhcccCCcchh
Confidence 24567778899999888654
No 226
>PRK11933 yebU rRNA (cytosine-C(5)-)-methyltransferase RsmF; Reviewed
Probab=98.46 E-value=2.7e-06 Score=74.17 Aligned_cols=109 Identities=19% Similarity=0.130 Sum_probs=82.0
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC--CCCCceeEEEe
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--CPTELFDLIFD 180 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--~~~~~fD~i~~ 180 (231)
..++.+|||++||.|.=+..++. ....+++.|+++.-++..++++.+.++. ++.+...|...+ .....||.|+.
T Consensus 111 ~~pg~~VLD~CAAPGgKTt~la~~l~~~g~lvA~D~~~~R~~~L~~nl~r~G~~-nv~v~~~D~~~~~~~~~~~fD~ILv 189 (470)
T PRK11933 111 DNAPQRVLDMAAAPGSKTTQIAALMNNQGAIVANEYSASRVKVLHANISRCGVS-NVALTHFDGRVFGAALPETFDAILL 189 (470)
T ss_pred CCCCCEEEEeCCCccHHHHHHHHHcCCCCEEEEEeCCHHHHHHHHHHHHHcCCC-eEEEEeCchhhhhhhchhhcCeEEE
Confidence 45678999999999999988887 2248999999999999999999888754 578888887653 22357999994
Q ss_pred ----CC--cccc-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 181 ----YT--FFCA-------IEP-------EMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 181 ----~~--~~~~-------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
+. ++.. .++ ..+.++|....+.|||||+|+.++-+
T Consensus 190 DaPCSG~G~~rk~p~~~~~~s~~~v~~l~~lQ~~iL~~A~~~LkpGG~LVYSTCT 244 (470)
T PRK11933 190 DAPCSGEGTVRKDPDALKNWSPESNLEIAATQRELIESAFHALKPGGTLVYSTCT 244 (470)
T ss_pred cCCCCCCcccccCHHHhhhCCHHHHHHHHHHHHHHHHHHHHHcCCCcEEEEECCC
Confidence 32 2222 111 12368899999999999999876643
No 227
>PF03059 NAS: Nicotianamine synthase protein; InterPro: IPR004298 Nicotianamine synthase 2.5.1.43 from EC catalyzes the trimerization of S-adenosylmethionine to yield one molecule of nicotianamine. Nicotianamine has an important role in plant iron uptake mechanisms. Plants adopt two strategies (termed I and II) of iron acquisition. Strategy I is adopted by all higher plants except graminaceous plants, which adopt strategy II [, ]. In strategy I plants, the role of nicotianamine is not fully determined: possible roles include the formation of more stable complexes with ferrous than with ferric ion, which might serve as a sensor of the physiological status of iron within a plant, or which might be involved in the transport of iron []. In strategy II (graminaceous) plants, nicotianamine is the key intermediate (and nicotianamine synthase the key enzyme) in the synthesis of the mugineic family (the only known family in plants) of phytosiderophores. Phytosiderophores are iron chelators whose secretion by the roots is greatly increased in instances of iron deficiency []. The 3D structures of five example NAS from Methanothermobacter thermautotrophicus reveal the monomer to consist of a five-helical bundle N-terminal domain on top of a classic Rossmann fold C-terminal domain. The N-terminal domain is unique to the NAS family, whereas the C-terminal domain is homologous to the class I family of SAM-dependent methyltransferases. An active site is created at the interface of the two domains, at the rim of a large cavity that corresponds to the nucleotide binding site such as is found in other proteins adopting a Rossmann fold [].; GO: 0030410 nicotianamine synthase activity, 0030418 nicotianamine biosynthetic process; PDB: 3O31_B 3FPH_A 3FPJ_A 3FPE_B 3FPF_B 3FPG_B.
Probab=98.44 E-value=6.1e-07 Score=72.55 Aligned_cols=103 Identities=20% Similarity=0.324 Sum_probs=65.0
Q ss_pred CCcEEEecCCC-chHHHHhcC---CCCeEEEEeCChHHHHHHHHHhc-cCCCCCceEEEEccCCCCC-CCCceeEEEeCC
Q 026903 109 KGRALVPGCGT-GYDVVAMAS---PERYVVGLEISDIAIKKAEELSS-SLPNAKFVSFLKADFFTWC-PTELFDLIFDYT 182 (231)
Q Consensus 109 ~~~vLDiGcG~-G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~-~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~ 182 (231)
+.+|+=||||. -..++.+++ .+..|+++|+++++++.+++... ..++..++.|+.+|..+.. .-..||+|+...
T Consensus 121 p~rVaFIGSGPLPlT~i~la~~~~~~~~v~~iD~d~~A~~~a~~lv~~~~~L~~~m~f~~~d~~~~~~dl~~~DvV~lAa 200 (276)
T PF03059_consen 121 PSRVAFIGSGPLPLTSIVLAKQHGPGARVHNIDIDPEANELARRLVASDLGLSKRMSFITADVLDVTYDLKEYDVVFLAA 200 (276)
T ss_dssp --EEEEE---SS-HHHHHHH--HTT--EEEEEESSHHHHHHHHHHHH---HH-SSEEEEES-GGGG-GG----SEEEE-T
T ss_pred cceEEEEcCCCcchHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHhhcccccCCeEEEecchhccccccccCCEEEEhh
Confidence 36999999997 455666665 35689999999999999998776 4445678999999998743 235899998654
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
... ++.+.+.+++..+.+.++||+.|++-
T Consensus 201 lVg-~~~e~K~~Il~~l~~~m~~ga~l~~R 229 (276)
T PF03059_consen 201 LVG-MDAEPKEEILEHLAKHMAPGARLVVR 229 (276)
T ss_dssp T-S-----SHHHHHHHHHHHS-TTSEEEEE
T ss_pred hcc-cccchHHHHHHHHHhhCCCCcEEEEe
Confidence 432 34467789999999999999988764
No 228
>PF13679 Methyltransf_32: Methyltransferase domain
Probab=98.43 E-value=1.5e-06 Score=63.78 Aligned_cols=91 Identities=18% Similarity=0.211 Sum_probs=67.5
Q ss_pred CCCCcEEEecCCCchHHHHhcC------CCCeEEEEeCChHHHHHHHHHhccCC--CCCceEEEEccCCCCCCCCceeEE
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFTWCPTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~------~~~~v~~iD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~~~~~~~fD~i 178 (231)
.+...|+|+|||.|+++..++. ++.+|+++|.++..++.+.++..... ...++.+..++..+.......+++
T Consensus 24 ~~~~~vvD~GsG~GyLs~~La~~l~~~~~~~~v~~iD~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 103 (141)
T PF13679_consen 24 KRCITVVDLGSGKGYLSRALAHLLCNSSPNLRVLGIDCNESLVESAQKRAQKLGSDLEKRLSFIQGDIADESSSDPPDIL 103 (141)
T ss_pred CCCCEEEEeCCChhHHHHHHHHHHHhcCCCCeEEEEECCcHHHHHHHHHHHHhcchhhccchhhccchhhhcccCCCeEE
Confidence 4457999999999999999987 56799999999999999988776654 345677777777665445677888
Q ss_pred EeCCcccccChHHHHHHHHHHHh
Q 026903 179 FDYTFFCAIEPEMRAAWAQKIKD 201 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~ 201 (231)
+..+.-..+++ .+|+.+.+
T Consensus 104 vgLHaCG~Ls~----~~l~~~~~ 122 (141)
T PF13679_consen 104 VGLHACGDLSD----RALRLFIR 122 (141)
T ss_pred EEeecccchHH----HHHHHHHH
Confidence 86555544543 34555554
No 229
>PF11968 DUF3321: Putative methyltransferase (DUF3321); InterPro: IPR021867 This family is conserved in fungi and is annotated as being a nucleolar protein.
Probab=98.39 E-value=1.9e-06 Score=66.55 Aligned_cols=102 Identities=23% Similarity=0.308 Sum_probs=74.5
Q ss_pred cHHHHHHHHcCCC------CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903 95 APIIVHLHQSGAL------PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (231)
Q Consensus 95 ~~~~~~~~~~~~~------~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 168 (231)
...+..++..... ...++|||||=+..+...-. .-..|+.||+++. .-.+.+.|+++
T Consensus 32 SK~lv~wL~~~~~~~~~~~~~lrlLEVGals~~N~~s~~-~~fdvt~IDLns~----------------~~~I~qqDFm~ 94 (219)
T PF11968_consen 32 SKWLVEWLKELGVRPKNGRPKLRLLEVGALSTDNACSTS-GWFDVTRIDLNSQ----------------HPGILQQDFME 94 (219)
T ss_pred hHHHHHHhhhhccccccccccceEEeecccCCCCccccc-CceeeEEeecCCC----------------CCCceeecccc
Confidence 4445555554321 12599999997665544321 2337999999773 23467888888
Q ss_pred -CCC---CCceeEEEeCCcccccC-hHHHHHHHHHHHhhcCCCcE-----EEEEE
Q 026903 169 -WCP---TELFDLIFDYTFFCAIE-PEMRAAWAQKIKDFLKPDGE-----LITLM 213 (231)
Q Consensus 169 -~~~---~~~fD~i~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~-----l~~~~ 213 (231)
+.| .+.||+|.++.++.++| +..+-++++++.+.|+|+|. |+++.
T Consensus 95 rplp~~~~e~FdvIs~SLVLNfVP~p~~RG~Ml~r~~~fL~~~g~~~~~~LFlVl 149 (219)
T PF11968_consen 95 RPLPKNESEKFDVISLSLVLNFVPDPKQRGEMLRRAHKFLKPPGLSLFPSLFLVL 149 (219)
T ss_pred CCCCCCcccceeEEEEEEEEeeCCCHHHHHHHHHHHHHHhCCCCccCcceEEEEe
Confidence 333 56899999999999998 57889999999999999999 76654
No 230
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=98.38 E-value=1.9e-06 Score=73.85 Aligned_cols=106 Identities=15% Similarity=0.232 Sum_probs=87.5
Q ss_pred CCCC-cEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCCCCceeEEEeCCc
Q 026903 107 LPKG-RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCPTELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~-~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~ 183 (231)
.+.. ++|-+|||.-.+...+.+-|. .++.+|+|+..++.+....... .+-+.+...|+.. .++.++||+|+.-..
T Consensus 46 ~p~~~~~l~lGCGNS~l~e~ly~~G~~dI~~iD~S~V~V~~m~~~~~~~--~~~~~~~~~d~~~l~fedESFdiVIdkGt 123 (482)
T KOG2352|consen 46 SPSDFKILQLGCGNSELSEHLYKNGFEDITNIDSSSVVVAAMQVRNAKE--RPEMQMVEMDMDQLVFEDESFDIVIDKGT 123 (482)
T ss_pred chhhceeEeecCCCCHHHHHHHhcCCCCceeccccHHHHHHHHhccccC--CcceEEEEecchhccCCCcceeEEEecCc
Confidence 3445 999999999999999999887 8999999999999887654322 2458899999999 678889999999988
Q ss_pred ccccCh--------HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 184 FCAIEP--------EMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 184 ~~~~~~--------~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
++++.. ..+...+.++.++|++||+.+.+++
T Consensus 124 lDal~~de~a~~~~~~v~~~~~eVsrvl~~~gk~~svtl 162 (482)
T KOG2352|consen 124 LDALFEDEDALLNTAHVSNMLDEVSRVLAPGGKYISVTL 162 (482)
T ss_pred cccccCCchhhhhhHHhhHHHhhHHHHhccCCEEEEEEe
Confidence 887632 2446778999999999999888887
No 231
>TIGR02987 met_A_Alw26 type II restriction m6 adenine DNA methyltransferase, Alw26I/Eco31I/Esp3I family. Members of this family are the m6-adenine DNA methyltransferase protein, or domain of a fusion protein that also carries m5 cytosine methyltransferase activity, of type II restriction systems of the Alw26I/Eco31I/Esp3I family. A methyltransferase of this family is alway accompanied by a type II restriction endonuclease from the Alw26I/Eco31I/Esp3I family (TIGR02986) and by an adenine-specific modification methyltransferase. Members of this family are unusual in that regions of similarity to homologs outside this family are circularly permuted.
Probab=98.35 E-value=3.3e-06 Score=75.24 Aligned_cols=76 Identities=18% Similarity=0.343 Sum_probs=54.6
Q ss_pred CCcEEEecCCCchHHHHhcCC--------C--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----C--CC
Q 026903 109 KGRALVPGCGTGYDVVAMASP--------E--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----C--PT 172 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~--------~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~--~~ 172 (231)
..+|||+|||+|.+...++.. + .+++|+|+++.++..++.++...+ ...+.+...|.... . ..
T Consensus 32 ~~~ilDP~cGsG~fl~~~~~~~~~~~~~~~~~~~i~g~DId~~a~~~a~~~l~~~~-~~~~~i~~~d~l~~~~~~~~~~~ 110 (524)
T TIGR02987 32 KTKIIDPCCGDGRLIAALLKKNEEINYFKEVELNIYFADIDKTLLKRAKKLLGEFA-LLEINVINFNSLSYVLLNIESYL 110 (524)
T ss_pred ceEEEeCCCCccHHHHHHHHHHHhcCCcccceeeeeeechhHHHHHHHHHHHhhcC-CCCceeeeccccccccccccccc
Confidence 369999999999999888751 1 478999999999999998876543 11245555553331 1 12
Q ss_pred CceeEEEeCCccc
Q 026903 173 ELFDLIFDYTFFC 185 (231)
Q Consensus 173 ~~fD~i~~~~~~~ 185 (231)
+.||+|+++..+.
T Consensus 111 ~~fD~IIgNPPy~ 123 (524)
T TIGR02987 111 DLFDIVITNPPYG 123 (524)
T ss_pred CcccEEEeCCCcc
Confidence 4799999987655
No 232
>PF04672 Methyltransf_19: S-adenosyl methyltransferase; InterPro: IPR006764 This is a family of uncharacterised proteins.; PDB: 3GIW_A 3GO4_A 2QE6_A.
Probab=98.33 E-value=4.1e-06 Score=67.12 Aligned_cols=107 Identities=19% Similarity=0.216 Sum_probs=70.7
Q ss_pred CcEEEecCCC--chHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---C----CCcee-
Q 026903 110 GRALVPGCGT--GYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---P----TELFD- 176 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~----~~~fD- 176 (231)
.-.||||||- -.++-.+++ +..+|+-+|.+|-.+..++..+..... .+..++++|+.++. . .+.+|
T Consensus 70 rQFLDlGsGlPT~~nvHevAq~~~P~aRVVYVD~DPvv~ah~ralL~~~~~-g~t~~v~aD~r~p~~iL~~p~~~~~lD~ 148 (267)
T PF04672_consen 70 RQFLDLGSGLPTAGNVHEVAQRVAPDARVVYVDNDPVVLAHARALLADNPR-GRTAYVQADLRDPEAILAHPEVRGLLDF 148 (267)
T ss_dssp -EEEEET--S--SS-HHHHHHHH-TT-EEEEEESSHHHHHCCHHHHTT-TT-SEEEEEE--TT-HHHHHCSHHHHCC--T
T ss_pred ceEEEcccCCCCCCCHhHHHHhhCCCceEEEECCCchHHHHHHhhhcCCCC-ccEEEEeCCCCCHHHHhcCHHHHhcCCC
Confidence 6899999994 234444544 788999999999999999998766531 23889999999931 1 12233
Q ss_pred ----EEEeCCcccccCh-HHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 177 ----LIFDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 177 ----~i~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
.++...++||+++ ++...+++.+.+.|.||.+|++++...+
T Consensus 149 ~rPVavll~~vLh~v~D~~dp~~iv~~l~d~lapGS~L~ish~t~d 194 (267)
T PF04672_consen 149 DRPVAVLLVAVLHFVPDDDDPAGIVARLRDALAPGSYLAISHATDD 194 (267)
T ss_dssp TS--EEEECT-GGGS-CGCTHHHHHHHHHCCS-TT-EEEEEEEB-T
T ss_pred CCCeeeeeeeeeccCCCccCHHHHHHHHHHhCCCCceEEEEecCCC
Confidence 4667788999976 6778999999999999999999888765
No 233
>COG0293 FtsJ 23S rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=98.32 E-value=8.7e-06 Score=62.77 Aligned_cols=109 Identities=16% Similarity=0.102 Sum_probs=76.6
Q ss_pred HHHHHHHcC--CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-
Q 026903 97 IIVHLHQSG--ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC- 170 (231)
Q Consensus 97 ~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~- 170 (231)
.+.++.++. ..++.+|+|+|+..|.++..+++ .+..|+++|+.|- ... .++.++++|+++..
T Consensus 32 KL~el~~k~~i~~~~~~ViDLGAAPGgWsQva~~~~~~~~~ivavDi~p~---------~~~---~~V~~iq~d~~~~~~ 99 (205)
T COG0293 32 KLLELNEKFKLFKPGMVVVDLGAAPGGWSQVAAKKLGAGGKIVAVDILPM---------KPI---PGVIFLQGDITDEDT 99 (205)
T ss_pred HHHHHHHhcCeecCCCEEEEcCCCCCcHHHHHHHHhCCCCcEEEEECccc---------ccC---CCceEEeeeccCccH
Confidence 345555554 33568999999999999999987 3335999999764 111 35999999999832
Q ss_pred --------CCCceeEEEeCCcc--------cccC-hHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 171 --------PTELFDLIFDYTFF--------CAIE-PEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 171 --------~~~~fD~i~~~~~~--------~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
...++|+|++-... +|.- -.....++.....+|+|||.+++-.|-.+
T Consensus 100 ~~~l~~~l~~~~~DvV~sD~ap~~~g~~~~Dh~r~~~L~~~a~~~a~~vL~~~G~fv~K~fqg~ 163 (205)
T COG0293 100 LEKLLEALGGAPVDVVLSDMAPNTSGNRSVDHARSMYLCELALEFALEVLKPGGSFVAKVFQGE 163 (205)
T ss_pred HHHHHHHcCCCCcceEEecCCCCcCCCccccHHHHHHHHHHHHHHHHHeeCCCCeEEEEEEeCC
Confidence 23457999976443 2221 12335667777789999999999888654
No 234
>COG4076 Predicted RNA methylase [General function prediction only]
Probab=98.32 E-value=1.3e-06 Score=65.77 Aligned_cols=99 Identities=19% Similarity=0.119 Sum_probs=79.5
Q ss_pred CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccCh
Q 026903 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP 189 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~ 189 (231)
..+.|+|+|+|.++...++...+|++++.+|.....|.+++.-.+ .++++++.+|+.+..- ...|+|+|-..--.+-.
T Consensus 34 d~~~DLGaGsGiLs~~Aa~~A~rViAiE~dPk~a~~a~eN~~v~g-~~n~evv~gDA~~y~f-e~ADvvicEmlDTaLi~ 111 (252)
T COG4076 34 DTFADLGAGSGILSVVAAHAAERVIAIEKDPKRARLAEENLHVPG-DVNWEVVVGDARDYDF-ENADVVICEMLDTALIE 111 (252)
T ss_pred hceeeccCCcchHHHHHHhhhceEEEEecCcHHHHHhhhcCCCCC-CcceEEEecccccccc-cccceeHHHHhhHHhhc
Confidence 699999999999999999987799999999999999999974443 3579999999999543 46899998654333323
Q ss_pred HHHHHHHHHHHhhcCCCcEEE
Q 026903 190 EMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 190 ~~~~~~l~~~~~~L~pgG~l~ 210 (231)
+.+...+..+...|+.++.++
T Consensus 112 E~qVpV~n~vleFLr~d~tii 132 (252)
T COG4076 112 EKQVPVINAVLEFLRYDPTII 132 (252)
T ss_pred ccccHHHHHHHHHhhcCCccc
Confidence 445667888888899998875
No 235
>KOG1709 consensus Guanidinoacetate methyltransferase and related proteins [Amino acid transport and metabolism]
Probab=98.31 E-value=7.1e-06 Score=63.13 Aligned_cols=113 Identities=21% Similarity=0.214 Sum_probs=84.3
Q ss_pred cHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CC
Q 026903 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WC 170 (231)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~ 170 (231)
.+.+.+..+....++++||++|-|-|...-++-+.. ..-+.||..|.+++..++...... .++.+..+-+.+ ..
T Consensus 88 tpiMha~A~ai~tkggrvLnVGFGMgIidT~iQe~~p~~H~IiE~hp~V~krmr~~gw~ek--~nViil~g~WeDvl~~L 165 (271)
T KOG1709|consen 88 TPIMHALAEAISTKGGRVLNVGFGMGIIDTFIQEAPPDEHWIIEAHPDVLKRMRDWGWREK--ENVIILEGRWEDVLNTL 165 (271)
T ss_pred hHHHHHHHHHHhhCCceEEEeccchHHHHHHHhhcCCcceEEEecCHHHHHHHHhcccccc--cceEEEecchHhhhccc
Confidence 455566555556778999999999999888886633 367889999999999998754433 468888887776 45
Q ss_pred CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
+++.||-|+--..-.+. ++...+.+.+.++|||+|++-.
T Consensus 166 ~d~~FDGI~yDTy~e~y--Edl~~~hqh~~rLLkP~gv~Sy 204 (271)
T KOG1709|consen 166 PDKHFDGIYYDTYSELY--EDLRHFHQHVVRLLKPEGVFSY 204 (271)
T ss_pred cccCcceeEeechhhHH--HHHHHHHHHHhhhcCCCceEEE
Confidence 67789999843222333 6677788899999999997743
No 236
>PF04816 DUF633: Family of unknown function (DUF633) ; InterPro: IPR006901 This is a family of uncharacterised bacterial proteins.; GO: 0016429 tRNA (adenine-N1-)-methyltransferase activity; PDB: 3LEC_A 3KU1_G 3KR9_A 3GNL_B.
Probab=98.27 E-value=1e-05 Score=63.05 Aligned_cols=71 Identities=14% Similarity=0.064 Sum_probs=56.6
Q ss_pred EEEecCCCchHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC-ceeEEEeCC
Q 026903 112 ALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE-LFDLIFDYT 182 (231)
Q Consensus 112 vLDiGcG~G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~-~fD~i~~~~ 182 (231)
|.||||--|++...|++.|. +++++|+++..++.|++++...++.++++++.+|-.+..+.+ ..|.|+...
T Consensus 1 vaDIGtDHgyLpi~L~~~~~~~~~ia~DI~~gpL~~A~~~i~~~~l~~~i~~rlgdGL~~l~~~e~~d~ivIAG 74 (205)
T PF04816_consen 1 VADIGTDHGYLPIYLLKNGKAPKAIAVDINPGPLEKAKENIAKYGLEDRIEVRLGDGLEVLKPGEDVDTIVIAG 74 (205)
T ss_dssp EEEET-STTHHHHHHHHTTSEEEEEEEESSHHHHHHHHHHHHHTT-TTTEEEEE-SGGGG--GGG---EEEEEE
T ss_pred CceeccchhHHHHHHHhcCCCCEEEEEeCCHHHHHHHHHHHHHcCCcccEEEEECCcccccCCCCCCCEEEEec
Confidence 68999999999999999876 899999999999999999999988899999999988855444 378888653
No 237
>PF13578 Methyltransf_24: Methyltransferase domain; PDB: 3SSO_A 3SSN_C 3SSM_D.
Probab=98.26 E-value=4.5e-07 Score=63.11 Aligned_cols=98 Identities=20% Similarity=0.165 Sum_probs=43.2
Q ss_pred EEecCCCchHHHHhcC---CC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEeCCcc
Q 026903 113 LVPGCGTGYDVVAMAS---PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFDYTFF 184 (231)
Q Consensus 113 LDiGcG~G~~~~~l~~---~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~i~~~~~~ 184 (231)
||+|+..|..+..+++ .. .+++++|..+. .+..++.+.+.+..++++++.++..+.. +..+||+++.-..-
T Consensus 1 lEiG~~~G~st~~l~~~~~~~~~~~~~~vD~~~~-~~~~~~~~~~~~~~~~~~~~~g~s~~~l~~~~~~~~dli~iDg~H 79 (106)
T PF13578_consen 1 LEIGTYSGYSTLWLASALRDNGRGKLYSVDPFPG-DEQAQEIIKKAGLSDRVEFIQGDSPDFLPSLPDGPIDLIFIDGDH 79 (106)
T ss_dssp --------------------------EEEESS-------------GGG-BTEEEEES-THHHHHHHHH--EEEEEEES--
T ss_pred CccccccccccccccccccccccCCEEEEECCCc-ccccchhhhhcCCCCeEEEEEcCcHHHHHHcCCCCEEEEEECCCC
Confidence 6899999999888876 23 27999999995 2233333333334467999999987732 24689999954321
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
..+.....+..+.+.|+|||++++-++
T Consensus 80 ---~~~~~~~dl~~~~~~l~~ggviv~dD~ 106 (106)
T PF13578_consen 80 ---SYEAVLRDLENALPRLAPGGVIVFDDY 106 (106)
T ss_dssp ----HHHHHHHHHHHGGGEEEEEEEEEE--
T ss_pred ---CHHHHHHHHHHHHHHcCCCeEEEEeCc
Confidence 124556678899999999999887553
No 238
>PF00398 RrnaAD: Ribosomal RNA adenine dimethylase; InterPro: IPR001737 This family of proteins include rRNA adenine dimethylases (e.g. KsgA) and the Erythromycin resistance methylases (Erm). The bacterial enzyme KsgA catalyses the transfer of a total of four methyl groups from S-adenosyl-l-methionine (S-AdoMet) to two adjacent adenosine bases in 16S rRNA. This enzyme and the resulting modified adenosine bases appear to be conserved in all species of eubacteria, eukaryotes, and archaea, and in eukaryotic organelles. Bacterial resistance to the aminoglycoside antibiotic kasugamycin involves inactivation of KsgA and resulting loss of the dimethylations, with modest consequences to the overall fitness of the organism. In contrast, the yeast ortholog, Dim1, is essential. In Saccharomyces cerevisiae (Baker's yeast), and presumably in other eukaryotes, the enzyme performs a vital role in pre-rRNA processing in addition to its methylating activity. The best conserved region in these enzymes is located in the N-terminal section and corresponds to a region that is probably involved in S-adenosyl methionine (SAM) binding domain. The crystal structure of KsgA from Escherichia coli has been solved to a resolution of 2.1A. It bears a strong similarity to the crystal structure of ErmC' from Bacillus stearothermophilus and a lesser similarity to the yeast mitochondrial transcription factor, sc-mtTFB []. The Erm family of RNA methyltransferases, which methylate a single adenosine base in 23S rRNA confer resistance to the MLS-B group of antibiotics. Despite their sequence similarity, the two enzyme families have strikingly different levels of regulation that remain to be elucidated. Other orthologs, of this family include the yeast and Homo sapiens (Human) mitochondrial transcription factors (MTF1 and h-mtTFB respectively), which are nuclear encoded []. Human-mtTFB is able to stimulate transcription in vitro independently of its S-adenosylmethionine binding and rRNA methyltransferase activity [].; GO: 0000179 rRNA (adenine-N6,N6-)-dimethyltransferase activity, 0008649 rRNA methyltransferase activity, 0000154 rRNA modification; PDB: 3FTF_A 3R9X_B 3FTE_A 3FTC_A 3FTD_A 3GRY_A 3FYC_A 3GRU_A 3FYD_A 3GRV_A ....
Probab=98.24 E-value=7.2e-06 Score=66.55 Aligned_cols=103 Identities=18% Similarity=0.199 Sum_probs=73.8
Q ss_pred cHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903 95 APIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 95 ~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
...+..+++.... ++..|||+|+|.|.++..|++.+.+++++|.++..++..++.... .++++++.+|+..+....
T Consensus 16 ~~~~~~Iv~~~~~~~~~~VlEiGpG~G~lT~~L~~~~~~v~~vE~d~~~~~~L~~~~~~---~~~~~vi~~D~l~~~~~~ 92 (262)
T PF00398_consen 16 PNIADKIVDALDLSEGDTVLEIGPGPGALTRELLKRGKRVIAVEIDPDLAKHLKERFAS---NPNVEVINGDFLKWDLYD 92 (262)
T ss_dssp HHHHHHHHHHHTCGTTSEEEEESSTTSCCHHHHHHHSSEEEEEESSHHHHHHHHHHCTT---CSSEEEEES-TTTSCGGG
T ss_pred HHHHHHHHHhcCCCCCCEEEEeCCCCccchhhHhcccCcceeecCcHhHHHHHHHHhhh---cccceeeecchhccccHH
Confidence 3445566665543 568999999999999999999889999999999999999987753 257999999999954333
Q ss_pred ----ceeEEEeCCcccccChHHHHHHHHHHHhhcCC
Q 026903 174 ----LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKP 205 (231)
Q Consensus 174 ----~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~p 205 (231)
....|+++..+ +++ ..++.++...-+.
T Consensus 93 ~~~~~~~~vv~NlPy-~is----~~il~~ll~~~~~ 123 (262)
T PF00398_consen 93 LLKNQPLLVVGNLPY-NIS----SPILRKLLELYRF 123 (262)
T ss_dssp HCSSSEEEEEEEETG-TGH----HHHHHHHHHHGGG
T ss_pred hhcCCceEEEEEecc-cch----HHHHHHHhhcccc
Confidence 55667765444 443 3445555543333
No 239
>PF05971 Methyltransf_10: Protein of unknown function (DUF890); InterPro: IPR010286 This family consists of several conserved hypothetical proteins from both eukaryotes and prokaryotes. The function of members of this family are unknown but are predicted to be SAM-dependent methyltransferases.; GO: 0008168 methyltransferase activity; PDB: 2H00_A.
Probab=98.20 E-value=8.9e-06 Score=66.47 Aligned_cols=91 Identities=22% Similarity=0.176 Sum_probs=52.5
Q ss_pred HHHHHHcCCCC---CCcEEEecCCCchHH-HHhcC-CCCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEEcc----CC
Q 026903 98 IVHLHQSGALP---KGRALVPGCGTGYDV-VAMAS-PERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKAD----FF 167 (231)
Q Consensus 98 ~~~~~~~~~~~---~~~vLDiGcG~G~~~-~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d----~~ 167 (231)
+.+++...... .-++||||||..-.- +..++ .+.+++|+|+++..++.|++++..+ .+.++|+++... ++
T Consensus 89 i~DlL~~~~~~~~~~v~glDIGTGAscIYpLLg~~~~~W~fvaTdID~~sl~~A~~nv~~N~~L~~~I~l~~~~~~~~i~ 168 (299)
T PF05971_consen 89 IADLLASSNPGIPEKVRGLDIGTGASCIYPLLGAKLYGWSFVATDIDPKSLESARENVERNPNLESRIELRKQKNPDNIF 168 (299)
T ss_dssp HHHHHT--TCGCS---EEEEES-TTTTHHHHHHHHHH--EEEEEES-HHHHHHHHHHHHHT-T-TTTEEEEE--ST-SST
T ss_pred HHHHhhccccccccceEeecCCccHHHHHHHHhhhhcCCeEEEecCCHHHHHHHHHHHHhccccccceEEEEcCCccccc
Confidence 55555543211 358999999997442 22222 6889999999999999999999988 788889987653 23
Q ss_pred C--CCCCCceeEEEeCCcccccC
Q 026903 168 T--WCPTELFDLIFDYTFFCAIE 188 (231)
Q Consensus 168 ~--~~~~~~fD~i~~~~~~~~~~ 188 (231)
. ..+.+.||+.+|+..|+.-.
T Consensus 169 ~~i~~~~e~~dftmCNPPFy~s~ 191 (299)
T PF05971_consen 169 DGIIQPNERFDFTMCNPPFYSSQ 191 (299)
T ss_dssp TTSTT--S-EEEEEE-----SS-
T ss_pred hhhhcccceeeEEecCCccccCh
Confidence 2 12335899999998887643
No 240
>TIGR00006 S-adenosyl-methyltransferase MraW. Genetics paper in 1972 links mra cluster to peptidoglycan biosynthesis in E. coli. Seems to be common in proteobacteria.wn.
Probab=98.18 E-value=2.9e-05 Score=63.84 Aligned_cols=81 Identities=19% Similarity=0.169 Sum_probs=61.5
Q ss_pred HHHHHHcCC-CCCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---C-
Q 026903 98 IVHLHQSGA-LPKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---C- 170 (231)
Q Consensus 98 ~~~~~~~~~-~~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~- 170 (231)
+.+.+.... .+++.++|.=||.|..+..+++. ..+|+|+|.++.+++.+++++..+ ..++.++++++.+. .
T Consensus 9 l~Evl~~L~~~~ggiyVD~TlG~GGHS~~iL~~l~~g~vigiD~D~~Al~~ak~~L~~~--~~R~~~i~~nF~~l~~~l~ 86 (305)
T TIGR00006 9 LDEVVEGLNIKPDGIYIDCTLGFGGHSKAILEQLGTGRLIGIDRDPQAIAFAKERLSDF--EGRVVLIHDNFANFFEHLD 86 (305)
T ss_pred HHHHHHhcCcCCCCEEEEeCCCChHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHHHhhc--CCcEEEEeCCHHHHHHHHH
Confidence 344444443 45689999999999999999873 368999999999999999987654 25789999988872 1
Q ss_pred --CCCceeEEEe
Q 026903 171 --PTELFDLIFD 180 (231)
Q Consensus 171 --~~~~fD~i~~ 180 (231)
...++|.|+.
T Consensus 87 ~~~~~~vDgIl~ 98 (305)
T TIGR00006 87 ELLVTKIDGILV 98 (305)
T ss_pred hcCCCcccEEEE
Confidence 1235777775
No 241
>COG4262 Predicted spermidine synthase with an N-terminal membrane domain [General function prediction only]
Probab=98.18 E-value=2.4e-05 Score=64.85 Aligned_cols=106 Identities=16% Similarity=0.260 Sum_probs=78.0
Q ss_pred CcEEEecCCCchHHHHhcC-CC-CeEEEEeCChHHHHHHHHHh--ccC---C-CCCceEEEEccCCCCCC--CCceeEEE
Q 026903 110 GRALVPGCGTGYDVVAMAS-PE-RYVVGLEISDIAIKKAEELS--SSL---P-NAKFVSFLKADFFTWCP--TELFDLIF 179 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~--~~~---~-~~~~i~~~~~d~~~~~~--~~~fD~i~ 179 (231)
.+||-+|.|.|...+.+.+ ++ .+++-+|.+|++++.++++. ... . .+++++++..|.+++.. .+.||+|+
T Consensus 291 ~~vLvlGGGDGLAlRellkyP~~~qI~lVdLDP~miela~~~~vlr~~N~~sf~dpRv~Vv~dDAf~wlr~a~~~fD~vI 370 (508)
T COG4262 291 RSVLVLGGGDGLALRELLKYPQVEQITLVDLDPRMIELASHATVLRALNQGSFSDPRVTVVNDDAFQWLRTAADMFDVVI 370 (508)
T ss_pred ceEEEEcCCchHHHHHHHhCCCcceEEEEecCHHHHHHhhhhhHhhhhccCCccCCeeEEEeccHHHHHHhhcccccEEE
Confidence 6999999999999999999 54 49999999999999998532 221 1 24689999999999543 45899998
Q ss_pred eCCcccccCh---HHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 180 DYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 180 ~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
....-..-+. -.-..+...+.+.|+++|.+++..=+
T Consensus 371 VDl~DP~tps~~rlYS~eFY~ll~~~l~e~Gl~VvQags 409 (508)
T COG4262 371 VDLPDPSTPSIGRLYSVEFYRLLSRHLAETGLMVVQAGS 409 (508)
T ss_pred EeCCCCCCcchhhhhhHHHHHHHHHhcCcCceEEEecCC
Confidence 5322111000 12256788899999999998875433
No 242
>PRK11760 putative 23S rRNA C2498 ribose 2'-O-ribose methyltransferase; Provisional
Probab=98.11 E-value=1.1e-05 Score=66.72 Aligned_cols=69 Identities=20% Similarity=0.223 Sum_probs=54.2
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CCceeEEEeCCc
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~fD~i~~~~~ 183 (231)
.++.++||+||++|.++..+++.|..|++||..+-. ..+. ..++|.....|.+...+ .+.+|.++|-.+
T Consensus 210 ~~g~~vlDLGAsPGGWT~~L~~rG~~V~AVD~g~l~-----~~L~---~~~~V~h~~~d~fr~~p~~~~vDwvVcDmv 279 (357)
T PRK11760 210 APGMRAVDLGAAPGGWTYQLVRRGMFVTAVDNGPMA-----QSLM---DTGQVEHLRADGFKFRPPRKNVDWLVCDMV 279 (357)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHcCCEEEEEechhcC-----Hhhh---CCCCEEEEeccCcccCCCCCCCCEEEEecc
Confidence 456899999999999999999999999999965421 1111 12578999998888655 678999998665
No 243
>KOG4058 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.10 E-value=3.1e-05 Score=56.11 Aligned_cols=116 Identities=20% Similarity=0.206 Sum_probs=86.0
Q ss_pred cHHHHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-
Q 026903 95 APIIVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP- 171 (231)
Q Consensus 95 ~~~~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~- 171 (231)
...++..+... ..+.++.+|+|+|.|+.....++.| ...+|+|+++..+.+++-+.-+.+......|..-|+.....
T Consensus 58 teQv~nVLSll~~n~~GklvDlGSGDGRiVlaaar~g~~~a~GvELNpwLVaysrl~a~R~g~~k~trf~RkdlwK~dl~ 137 (199)
T KOG4058|consen 58 TEQVENVLSLLRGNPKGKLVDLGSGDGRIVLAAARCGLRPAVGVELNPWLVAYSRLHAWRAGCAKSTRFRRKDLWKVDLR 137 (199)
T ss_pred HHHHHHHHHHccCCCCCcEEeccCCCceeehhhhhhCCCcCCceeccHHHHHHHHHHHHHHhcccchhhhhhhhhhcccc
Confidence 34455555544 3344899999999999999999988 48999999999999999888777777888999999988433
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
+-.+-+|| .+- +....+-.++..-|..+..++..-|+..
T Consensus 138 dy~~vviF--gae-----s~m~dLe~KL~~E~p~nt~vvacRFPLP 176 (199)
T KOG4058|consen 138 DYRNVVIF--GAE-----SVMPDLEDKLRTELPANTRVVACRFPLP 176 (199)
T ss_pred ccceEEEe--ehH-----HHHhhhHHHHHhhCcCCCeEEEEecCCC
Confidence 32344444 222 2334455667778889999998888764
No 244
>KOG3115 consensus Methyltransferase-like protein [General function prediction only]
Probab=98.09 E-value=1.8e-05 Score=60.42 Aligned_cols=104 Identities=19% Similarity=0.258 Sum_probs=70.2
Q ss_pred CcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCC------CCCceEEEEccCCCCCCC----CceeE
Q 026903 110 GRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP------NAKFVSFLKADFFTWCPT----ELFDL 177 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~------~~~~i~~~~~d~~~~~~~----~~fD~ 177 (231)
--+.|||||-|.++..|+. +..-++|.|+-.++.++.++++.... .-.++.+...+...+.+. ++..-
T Consensus 62 vefaDIGCGyGGLlv~Lsp~fPdtLiLGmEIR~KVsdYVk~RI~ALR~~~a~~~~~ni~vlr~namk~lpn~f~kgqLsk 141 (249)
T KOG3115|consen 62 VEFADIGCGYGGLLMKLAPKFPDTLILGMEIRDKVSDYVKERIQALRRTSAEGQYPNISVLRTNAMKFLPNFFEKGQLSK 141 (249)
T ss_pred ceEEeeccCccchhhhccccCccceeeeehhhHHHHHHHHHHHHHHhccccccccccceeeeccchhhccchhhhccccc
Confidence 5899999999999999998 66689999999999999888765542 123566777776664432 22222
Q ss_pred EEeCCcccccCh------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 178 IFDYTFFCAIEP------EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 178 i~~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
.+..+.-.|+-. -....++.+..-+|++||.++..+
T Consensus 142 mff~fpdpHfk~~khk~rii~~~l~~eyay~l~~gg~~ytit 183 (249)
T KOG3115|consen 142 MFFLFPDPHFKARKHKWRIITSTLLSEYAYVLREGGILYTIT 183 (249)
T ss_pred ceeecCChhHhhhhccceeechhHHHHHHhhhhcCceEEEEe
Confidence 221111111100 011578889999999999998765
No 245
>COG0144 Sun tRNA and rRNA cytosine-C5-methylases [Translation, ribosomal structure and biogenesis]
Probab=98.09 E-value=7.6e-05 Score=63.18 Aligned_cols=108 Identities=22% Similarity=0.231 Sum_probs=80.7
Q ss_pred CCCCCcEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC---CCCC-CceeE
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT---WCPT-ELFDL 177 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~---~~~~-~~fD~ 177 (231)
..++.+|||+.++.|.=+..++. .|..|+++|.++.-++..++++.+.++.+ +.....|... ..+. +.||.
T Consensus 154 p~pge~VlD~cAAPGGKTthla~~~~~~~~iV~A~D~~~~Rl~~l~~nl~RlG~~n-v~~~~~d~~~~~~~~~~~~~fD~ 232 (355)
T COG0144 154 PKPGERVLDLCAAPGGKTTHLAELMENEGAIVVAVDVSPKRLKRLRENLKRLGVRN-VIVVNKDARRLAELLPGGEKFDR 232 (355)
T ss_pred CCCcCEEEEECCCCCCHHHHHHHhcCCCCceEEEEcCCHHHHHHHHHHHHHcCCCc-eEEEecccccccccccccCcCcE
Confidence 55678999999999988888876 24568999999999999999999987654 6777777654 2222 25999
Q ss_pred EEeC------Ccccc-------cCh-------HHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 178 IFDY------TFFCA-------IEP-------EMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 178 i~~~------~~~~~-------~~~-------~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
|+.- .++.. ..+ ..+.++|....+.|||||+|+.++=
T Consensus 233 iLlDaPCSg~G~irr~Pd~~~~~~~~~i~~l~~lQ~~iL~~a~~~lk~GG~LVYSTC 289 (355)
T COG0144 233 ILLDAPCSGTGVIRRDPDVKWRRTPEDIAELAKLQKEILAAALKLLKPGGVLVYSTC 289 (355)
T ss_pred EEECCCCCCCcccccCccccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEcc
Confidence 9963 22211 111 2347899999999999999987663
No 246
>KOG3987 consensus Uncharacterized conserved protein DREV/CGI-81 [Function unknown]
Probab=98.00 E-value=1.9e-06 Score=65.82 Aligned_cols=93 Identities=19% Similarity=0.144 Sum_probs=68.4
Q ss_pred CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CCceeEEEeCCcccc
Q 026903 108 PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFDYTFFCA 186 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~fD~i~~~~~~~~ 186 (231)
.+.++||+|+|.|..+..++..-.+|++.|.|..|+...++.-. -.....+... +-+||+|.|...+..
T Consensus 112 ~~~~lLDlGAGdGeit~~m~p~feevyATElS~tMr~rL~kk~y----------nVl~~~ew~~t~~k~dli~clNlLDR 181 (288)
T KOG3987|consen 112 EPVTLLDLGAGDGEITLRMAPTFEEVYATELSWTMRDRLKKKNY----------NVLTEIEWLQTDVKLDLILCLNLLDR 181 (288)
T ss_pred CCeeEEeccCCCcchhhhhcchHHHHHHHHhhHHHHHHHhhcCC----------ceeeehhhhhcCceeehHHHHHHHHh
Confidence 34799999999999999998866689999999999988876321 1111222221 237999998877654
Q ss_pred cChHHHHHHHHHHHhhcCC-CcEEEEE
Q 026903 187 IEPEMRAAWAQKIKDFLKP-DGELITL 212 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~p-gG~l~~~ 212 (231)
- .+.-++|+.+..+|+| +|.+++.
T Consensus 182 c--~~p~kLL~Di~~vl~psngrviva 206 (288)
T KOG3987|consen 182 C--FDPFKLLEDIHLVLAPSNGRVIVA 206 (288)
T ss_pred h--cChHHHHHHHHHHhccCCCcEEEE
Confidence 3 2336789999999999 8887764
No 247
>COG1189 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.99 E-value=3.9e-05 Score=60.15 Aligned_cols=108 Identities=17% Similarity=0.091 Sum_probs=75.2
Q ss_pred cHHHHHHHHcC--CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCce-EEEEccCCCCC
Q 026903 95 APIIVHLHQSG--ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFTWC 170 (231)
Q Consensus 95 ~~~~~~~~~~~--~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i-~~~~~d~~~~~ 170 (231)
...+...++.. ..++..+||+|+.||.++..+++.|+ +|+++|..-..+..--+ .++++ .+...|+....
T Consensus 64 ~~KL~~ale~F~l~~k~kv~LDiGsSTGGFTd~lLq~gAk~VyavDVG~~Ql~~kLR------~d~rV~~~E~tN~r~l~ 137 (245)
T COG1189 64 GLKLEKALEEFELDVKGKVVLDIGSSTGGFTDVLLQRGAKHVYAVDVGYGQLHWKLR------NDPRVIVLERTNVRYLT 137 (245)
T ss_pred HHHHHHHHHhcCcCCCCCEEEEecCCCccHHHHHHHcCCcEEEEEEccCCccCHhHh------cCCcEEEEecCChhhCC
Confidence 34455566655 44678999999999999999999987 99999997643332111 22344 44556666644
Q ss_pred CC---CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 171 PT---ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 171 ~~---~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
++ +..|+++|--.|.-+ ..+|-.+..+++|++.++..-
T Consensus 138 ~~~~~~~~d~~v~DvSFISL-----~~iLp~l~~l~~~~~~~v~Lv 178 (245)
T COG1189 138 PEDFTEKPDLIVIDVSFISL-----KLILPALLLLLKDGGDLVLLV 178 (245)
T ss_pred HHHcccCCCeEEEEeehhhH-----HHHHHHHHHhcCCCceEEEEe
Confidence 32 367888877666433 567888999999999876543
No 248
>PF01269 Fibrillarin: Fibrillarin; InterPro: IPR000692 Fibrillarin is a component of a nucleolar small nuclear ribonucleoprotein (SnRNP), functioning in vivo in ribosomal RNA processing [, ]. It is associated with U3, U8 and U13 small nuclear RNAs in mammals [] and is similar to the yeast NOP1 protein []. Fibrillarin has a well conserved sequence of around 320 amino acids, and contains 3 domains, an N-terminal Gly/Arg-rich region; a central domain resembling other RNA-binding proteins and containing an RNP-2-like consensus sequence; and a C-terminal alpha-helical domain. An evolutionarily related pre-rRNA processing protein, which lacks the Gly/Arg-rich domain, has been found in various archaebacteria.; GO: 0003723 RNA binding, 0008168 methyltransferase activity, 0006364 rRNA processing, 0008033 tRNA processing; PDB: 3PLA_E 3ID6_C 3ID5_B 1NT2_A 3NVK_J 2NNW_B 3NVM_B 3NMU_J 1PRY_A 1G8A_A ....
Probab=97.96 E-value=7.5e-05 Score=58.13 Aligned_cols=110 Identities=24% Similarity=0.304 Sum_probs=76.9
Q ss_pred CCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEEe
Q 026903 108 PKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~i~~ 180 (231)
++.+||-+|.++|...-.++. ....|+++|+|+......-...... +||-.+-.|+..+. .-+..|+|++
T Consensus 73 ~gskVLYLGAasGTTVSHvSDIvg~~G~VYaVEfs~r~~rdL~~la~~R---~NIiPIl~DAr~P~~Y~~lv~~VDvI~~ 149 (229)
T PF01269_consen 73 PGSKVLYLGAASGTTVSHVSDIVGPDGVVYAVEFSPRSMRDLLNLAKKR---PNIIPILEDARHPEKYRMLVEMVDVIFQ 149 (229)
T ss_dssp TT-EEEEETTTTSHHHHHHHHHHTTTSEEEEEESSHHHHHHHHHHHHHS---TTEEEEES-TTSGGGGTTTS--EEEEEE
T ss_pred CCCEEEEecccCCCccchhhhccCCCCcEEEEEecchhHHHHHHHhccC---CceeeeeccCCChHHhhcccccccEEEe
Confidence 467999999999999888876 4568999999997766555544443 47888999998842 1248999996
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCC
Q 026903 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 224 (231)
.-. .+++..-++.++...||+||.+++.--...-+.+.+|
T Consensus 150 DVa----Qp~Qa~I~~~Na~~fLk~gG~~~i~iKa~siD~t~~p 189 (229)
T PF01269_consen 150 DVA----QPDQARIAALNARHFLKPGGHLIISIKARSIDSTADP 189 (229)
T ss_dssp E-S----STTHHHHHHHHHHHHEEEEEEEEEEEEHHHH-SSSSH
T ss_pred cCC----ChHHHHHHHHHHHhhccCCcEEEEEEecCcccCcCCH
Confidence 433 2355567788888999999999887655443444443
No 249
>TIGR01444 fkbM_fam methyltransferase, FkbM family. Members of this family are characterized by two well-conserved short regions separated by a variable in both sequence and length. The first of the two regions is found in a large number of proteins outside this subfamily, a number of which have been characterized as methyltransferases. One member of the present family, FkbM, was shown to be required for a specific methylation in the biosynthesis of the immunosuppressant FK506 in Streptomyces strain MA6548.
Probab=97.94 E-value=3.3e-05 Score=56.57 Aligned_cols=57 Identities=19% Similarity=0.039 Sum_probs=47.1
Q ss_pred cEEEecCCCchHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903 111 RALVPGCGTGYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 168 (231)
.+||+|||.|..+..+++.+. +++++|+++.+.+.++++...++.. ++++++..+.+
T Consensus 1 ~vlDiGa~~G~~~~~~~~~~~~~~v~~~E~~~~~~~~l~~~~~~n~~~-~v~~~~~al~~ 59 (143)
T TIGR01444 1 VVIDVGANIGDTSLYFARKGAEGRVIAFEPLPDAYEILEENVKLNNLP-NVVLLNAAVGD 59 (143)
T ss_pred CEEEccCCccHHHHHHHHhCCCCEEEEEecCHHHHHHHHHHHHHcCCC-cEEEEEeeeeC
Confidence 489999999999999988543 7999999999999999998766543 47777776665
No 250
>PF07091 FmrO: Ribosomal RNA methyltransferase (FmrO); PDB: 3LCU_A 3LCV_B 3FRH_A 3FRI_A 3B89_A 3FZG_A.
Probab=97.93 E-value=7.7e-05 Score=59.16 Aligned_cols=105 Identities=19% Similarity=0.214 Sum_probs=70.2
Q ss_pred CCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903 108 PKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~ 185 (231)
++.+|+|||||.-=++..... .+..++|+|++..+++.....+...+ ...++...|+..-.+....|+.+..=+++
T Consensus 105 ~p~sVlDigCGlNPlalp~~~~~~~a~Y~a~DID~~~ve~l~~~l~~l~--~~~~~~v~Dl~~~~~~~~~DlaLllK~lp 182 (251)
T PF07091_consen 105 PPDSVLDIGCGLNPLALPWMPEAPGATYIAYDIDSQLVEFLNAFLAVLG--VPHDARVRDLLSDPPKEPADLALLLKTLP 182 (251)
T ss_dssp --SEEEEET-TTCHHHHHTTTSSTT-EEEEEESBHHHHHHHHHHHHHTT---CEEEEEE-TTTSHTTSEESEEEEET-HH
T ss_pred CCchhhhhhccCCceehhhcccCCCcEEEEEeCCHHHHHHHHHHHHhhC--CCcceeEeeeeccCCCCCcchhhHHHHHH
Confidence 368999999999888776665 56799999999999999998877665 35778888998876778899999877777
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
.+..+.+...+ ++.+.+ +...+++.|+..
T Consensus 183 ~le~q~~g~g~-~ll~~~--~~~~~vVSfPtr 211 (251)
T PF07091_consen 183 CLERQRRGAGL-ELLDAL--RSPHVVVSFPTR 211 (251)
T ss_dssp HHHHHSTTHHH-HHHHHS--CESEEEEEEES-
T ss_pred HHHHHhcchHH-HHHHHh--CCCeEEEecccc
Confidence 76433322222 233332 334555566553
No 251
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=97.89 E-value=9.2e-05 Score=64.01 Aligned_cols=101 Identities=22% Similarity=0.261 Sum_probs=73.5
Q ss_pred CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC------CceeEEEeCC
Q 026903 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT------ELFDLIFDYT 182 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~------~~fD~i~~~~ 182 (231)
+..++|+-||+|.+++.+++...+|+|+|+++.++..|+.+...++.. |.+|+++-.++.++. ++-+++..
T Consensus 384 ~k~llDv~CGTG~iglala~~~~~ViGvEi~~~aV~dA~~nA~~Ngis-Na~Fi~gqaE~~~~sl~~~~~~~~~~v~i-- 460 (534)
T KOG2187|consen 384 DKTLLDVCCGTGTIGLALARGVKRVIGVEISPDAVEDAEKNAQINGIS-NATFIVGQAEDLFPSLLTPCCDSETLVAI-- 460 (534)
T ss_pred CcEEEEEeecCCceehhhhccccceeeeecChhhcchhhhcchhcCcc-ceeeeecchhhccchhcccCCCCCceEEE--
Confidence 479999999999999999998889999999999999999999888764 699999966663321 12332221
Q ss_pred cccccChH---HHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 183 FFCAIEPE---MRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 183 ~~~~~~~~---~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
++|+ .-.++++.+...=.+--.+++++-..
T Consensus 461 ----iDPpR~Glh~~~ik~l~~~~~~~rlvyvSCn~~ 493 (534)
T KOG2187|consen 461 ----IDPPRKGLHMKVIKALRAYKNPRRLVYVSCNPH 493 (534)
T ss_pred ----ECCCcccccHHHHHHHHhccCccceEEEEcCHH
Confidence 1111 11456666666666777777776544
No 252
>KOG2798 consensus Putative trehalase [Carbohydrate transport and metabolism]
Probab=97.85 E-value=8.2e-05 Score=60.50 Aligned_cols=100 Identities=25% Similarity=0.264 Sum_probs=67.8
Q ss_pred CCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHh---cc-CC------------------------------
Q 026903 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELS---SS-LP------------------------------ 154 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~---~~-~~------------------------------ 154 (231)
+.+||-.|||.|+++..|+..|..+-|=|+|--|+--..=.+ .. +.
T Consensus 151 ki~iLvPGaGlGRLa~dla~~G~~~qGNEfSy~Mli~S~FiLN~~~~~nq~~IYPfIh~~sn~~~~dDQlrpi~~PD~~p 230 (369)
T KOG2798|consen 151 KIRILVPGAGLGRLAYDLACLGFKCQGNEFSYFMLICSSFILNYCKQENQFTIYPFIHQYSNSLSRDDQLRPISIPDIHP 230 (369)
T ss_pred CceEEecCCCchhHHHHHHHhcccccccHHHHHHHHHHHHHHHhhccCCcEEEEeeeeccccccccccccccccCccccc
Confidence 469999999999999999999988888888876653211100 00 00
Q ss_pred -----CCCceEEEEccCCCCCCC----CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903 155 -----NAKFVSFLKADFFTWCPT----ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 155 -----~~~~i~~~~~d~~~~~~~----~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 210 (231)
......+..||+.+.... +.||+|+..+.+.-. .....+|+.+...|||||+.+
T Consensus 231 ~~~~~~~~~fsicaGDF~evy~~s~~~~~~d~VvTcfFIDTa--~NileYi~tI~~iLk~GGvWi 293 (369)
T KOG2798|consen 231 ASSNGNTGSFSICAGDFLEVYGTSSGAGSYDVVVTCFFIDTA--HNILEYIDTIYKILKPGGVWI 293 (369)
T ss_pred cccCCCCCCccccccceeEEecCcCCCCccceEEEEEEeech--HHHHHHHHHHHHhccCCcEEE
Confidence 001223345666663322 369999987554332 566789999999999999876
No 253
>PRK10742 putative methyltransferase; Provisional
Probab=97.83 E-value=0.00015 Score=57.66 Aligned_cols=76 Identities=16% Similarity=0.076 Sum_probs=62.7
Q ss_pred cEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC------C--CCCceEEEEccCCCCCC--CCceeEEEe
Q 026903 111 RALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL------P--NAKFVSFLKADFFTWCP--TELFDLIFD 180 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~------~--~~~~i~~~~~d~~~~~~--~~~fD~i~~ 180 (231)
+|||+-+|.|..+..++..|..|+++|.++......++++... . ...+++++++|..++.. ...||+|+.
T Consensus 91 ~VLD~TAGlG~Da~~las~G~~V~~vEr~p~vaalL~dgL~ra~~~~~~~~~~~~ri~l~~~da~~~L~~~~~~fDVVYl 170 (250)
T PRK10742 91 DVVDATAGLGRDAFVLASVGCRVRMLERNPVVAALLDDGLARGYADAEIGGWLQERLQLIHASSLTALTDITPRPQVVYL 170 (250)
T ss_pred EEEECCCCccHHHHHHHHcCCEEEEEECCHHHHHHHHHHHHHhhhccccchhhhceEEEEeCcHHHHHhhCCCCCcEEEE
Confidence 8999999999999999999999999999999998888877653 1 12468999999888432 347999998
Q ss_pred CCcccc
Q 026903 181 YTFFCA 186 (231)
Q Consensus 181 ~~~~~~ 186 (231)
-..|.|
T Consensus 171 DPMfp~ 176 (250)
T PRK10742 171 DPMFPH 176 (250)
T ss_pred CCCCCC
Confidence 766665
No 254
>KOG3201 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.74 E-value=4e-05 Score=56.41 Aligned_cols=102 Identities=20% Similarity=0.260 Sum_probs=71.7
Q ss_pred CCCcEEEecCCC-chHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCC--CCCceEEEEccCCC---CCCCCceeEEE
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFT---WCPTELFDLIF 179 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~---~~~~~~fD~i~ 179 (231)
.+.+|||+|.|- |..++.+|. +...|...|-+++.++..++....+. .-.++.....++.. .....+||+|+
T Consensus 29 rg~~ilelgggft~laglmia~~a~~~~v~ltdgne~svrnv~ki~~~n~~s~~tsc~vlrw~~~~aqsq~eq~tFDiIl 108 (201)
T KOG3201|consen 29 RGRRILELGGGFTGLAGLMIACKAPDSSVWLTDGNEESVRNVEKIRNSNMASSLTSCCVLRWLIWGAQSQQEQHTFDIIL 108 (201)
T ss_pred hHHHHHHhcCchhhhhhhheeeecCCceEEEecCCHHHHHHHHHHHhcccccccceehhhHHHHhhhHHHHhhCcccEEE
Confidence 347999999995 555566665 55689999999999999888654431 11223222222222 22335899999
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
|...+.. ++.+..+++.+..+|+|.|.-++
T Consensus 109 aADClFf--dE~h~sLvdtIk~lL~p~g~Al~ 138 (201)
T KOG3201|consen 109 AADCLFF--DEHHESLVDTIKSLLRPSGRALL 138 (201)
T ss_pred eccchhH--HHHHHHHHHHHHHHhCcccceeE
Confidence 9988743 47889999999999999999544
No 255
>PF01861 DUF43: Protein of unknown function DUF43; InterPro: IPR002723 This family of prokaryotic proteins have not been characterised. All the members are 350-400 amino acids long.; PDB: 2QM3_A.
Probab=97.72 E-value=0.0015 Score=51.59 Aligned_cols=111 Identities=16% Similarity=0.165 Sum_probs=67.5
Q ss_pred HHHcCCCCCCcEEEecCCCc-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC---Ccee
Q 026903 101 LHQSGALPKGRALVPGCGTG-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFD 176 (231)
Q Consensus 101 ~~~~~~~~~~~vLDiGcG~G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~fD 176 (231)
+.....+.+++||-+|=..- .++..+.....+|+.+|+++..+++.++...+.++. |+.+..|+.+++|+ +.||
T Consensus 37 ~~~~gdL~gk~il~lGDDDLtSlA~al~~~~~~I~VvDiDeRll~fI~~~a~~~gl~--i~~~~~DlR~~LP~~~~~~fD 114 (243)
T PF01861_consen 37 MAERGDLEGKRILFLGDDDLTSLALALTGLPKRITVVDIDERLLDFINRVAEEEGLP--IEAVHYDLRDPLPEELRGKFD 114 (243)
T ss_dssp HHHTT-STT-EEEEES-TT-HHHHHHHHT--SEEEEE-S-HHHHHHHHHHHHHHT----EEEE---TTS---TTTSS-BS
T ss_pred HHhcCcccCCEEEEEcCCcHHHHHHHhhCCCCeEEEEEcCHHHHHHHHHHHHHcCCc--eEEEEecccccCCHHHhcCCC
Confidence 44445678899999995442 233333345669999999999999999988777654 99999999997765 5899
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
++++.... +.+-..-++.+..+.||..|......|+.
T Consensus 115 ~f~TDPPy---T~~G~~LFlsRgi~~Lk~~g~~gy~~~~~ 151 (243)
T PF01861_consen 115 VFFTDPPY---TPEGLKLFLSRGIEALKGEGCAGYFGFTH 151 (243)
T ss_dssp EEEE---S---SHHHHHHHHHHHHHTB-STT-EEEEEE-T
T ss_pred EEEeCCCC---CHHHHHHHHHHHHHHhCCCCceEEEEEec
Confidence 99976543 23667889999999999888655556654
No 256
>PF01795 Methyltransf_5: MraW methylase family; InterPro: IPR002903 This is a family of S-adenosyl-L-methionine-dependent methyltransferases, which are found primarily, though not exclusively, in bacteria. The Escherichia coli protein is essential and has been linked to peptidoglycan biosynthesis [, ].; GO: 0008168 methyltransferase activity; PDB: 1N2X_A 1M6Y_A 1WG8_A 3TKA_A.
Probab=97.71 E-value=0.00017 Score=59.34 Aligned_cols=73 Identities=19% Similarity=0.236 Sum_probs=53.8
Q ss_pred CCCCCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------C-CCCcee
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------C-PTELFD 176 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~-~~~~fD 176 (231)
..+++.++|.=-|.|..+..+++ ++.+++|+|.++.+++.+++++... .+++.++++++.+. . ....+|
T Consensus 18 ~~~~g~~vD~T~G~GGHS~aiL~~~~~~~li~~DrD~~a~~~a~~~l~~~--~~r~~~~~~~F~~l~~~l~~~~~~~~~d 95 (310)
T PF01795_consen 18 PKPGGIYVDCTFGGGGHSKAILEKLPNGRLIGIDRDPEALERAKERLKKF--DDRFIFIHGNFSNLDEYLKELNGINKVD 95 (310)
T ss_dssp --TT-EEEETT-TTSHHHHHHHHT-TT-EEEEEES-HHHHHHHHCCTCCC--CTTEEEEES-GGGHHHHHHHTTTTS-EE
T ss_pred cCCCceEEeecCCcHHHHHHHHHhCCCCeEEEecCCHHHHHHHHHHHhhc--cceEEEEeccHHHHHHHHHHccCCCccC
Confidence 45668999999999999999987 4579999999999999999988755 36899999998882 1 224788
Q ss_pred EEEe
Q 026903 177 LIFD 180 (231)
Q Consensus 177 ~i~~ 180 (231)
.|+.
T Consensus 96 giL~ 99 (310)
T PF01795_consen 96 GILF 99 (310)
T ss_dssp EEEE
T ss_pred EEEE
Confidence 8875
No 257
>COG0275 Predicted S-adenosylmethionine-dependent methyltransferase involved in cell envelope biogenesis [Cell envelope biogenesis, outer membrane]
Probab=97.68 E-value=0.00098 Score=54.25 Aligned_cols=81 Identities=17% Similarity=0.149 Sum_probs=61.2
Q ss_pred HHHHHHcC-CCCCCcEEEecCCCchHHHHhcCCC---CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---
Q 026903 98 IVHLHQSG-ALPKGRALVPGCGTGYDVVAMASPE---RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--- 170 (231)
Q Consensus 98 ~~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~---~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--- 170 (231)
+.+.+..+ ..+++..+|.=-|.|..+..+++.. .+++++|.++.+++.|++....+. +++.+++.++.+..
T Consensus 12 l~E~i~~L~~~~~giyiD~TlG~GGHS~~iL~~l~~~~~li~~DrD~~Ai~~a~~~l~~~~--~r~~~v~~~F~~l~~~l 89 (314)
T COG0275 12 LNEVVELLAPKPDGIYIDGTLGAGGHSRAILEKLPDLGRLIGIDRDPQAIAIAKERLKEFD--GRVTLVHGNFANLAEAL 89 (314)
T ss_pred HHHHHHhcccCCCcEEEEecCCCcHhHHHHHHhCCCCCeEEEEcCCHHHHHHHHHHhhccC--CcEEEEeCcHHHHHHHH
Confidence 34444443 4456899999999999999999833 479999999999999999887754 68999999877721
Q ss_pred ---CCCceeEEEe
Q 026903 171 ---PTELFDLIFD 180 (231)
Q Consensus 171 ---~~~~fD~i~~ 180 (231)
..+.+|.|+.
T Consensus 90 ~~~~i~~vDGiL~ 102 (314)
T COG0275 90 KELGIGKVDGILL 102 (314)
T ss_pred HhcCCCceeEEEE
Confidence 1235666653
No 258
>KOG4589 consensus Cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning]
Probab=97.67 E-value=0.00043 Score=52.35 Aligned_cols=100 Identities=15% Similarity=0.174 Sum_probs=66.7
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCCC---------CCCC
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFTW---------CPTE 173 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~---------~~~~ 173 (231)
.|+.+|||+||..|.++....+ +...|.|+|+-. +... ..++++.+ |+.++ .|..
T Consensus 68 ~p~~~VlD~G~APGsWsQVavqr~~p~g~v~gVDllh---------~~p~---~Ga~~i~~~dvtdp~~~~ki~e~lp~r 135 (232)
T KOG4589|consen 68 RPEDTVLDCGAAPGSWSQVAVQRVNPNGMVLGVDLLH---------IEPP---EGATIIQGNDVTDPETYRKIFEALPNR 135 (232)
T ss_pred CCCCEEEEccCCCChHHHHHHHhhCCCceEEEEeeee---------ccCC---CCcccccccccCCHHHHHHHHHhCCCC
Confidence 4568999999999999988876 455899999832 2111 13566666 66662 3556
Q ss_pred ceeEEEeCCccccc--ChHHH-------HHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 174 LFDLIFDYTFFCAI--EPEMR-------AAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 174 ~fD~i~~~~~~~~~--~~~~~-------~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
..|+|++-+....- ...+. ..++.-....++|+|.+++-.|..++
T Consensus 136 ~VdvVlSDMapnaTGvr~~Dh~~~i~LC~s~l~~al~~~~p~g~fvcK~w~g~e 189 (232)
T KOG4589|consen 136 PVDVVLSDMAPNATGVRIRDHYRSIELCDSALLFALTLLIPNGSFVCKLWDGSE 189 (232)
T ss_pred cccEEEeccCCCCcCcchhhHHHHHHHHHHHHHHhhhhcCCCcEEEEEEecCCc
Confidence 89999986543221 11111 23444455678999999999988764
No 259
>PF01189 Nol1_Nop2_Fmu: NOL1/NOP2/sun family; InterPro: IPR001678 This domain is found in archaeal, bacterial and eukaryotic proteins. In the archaea and bacteria, they are annotated as putative nucleolar protein, Sun (Fmu) family protein or tRNA/rRNA cytosine-C5-methylase. The majority have the S-adenosyl methionine (SAM) binding domain and are related to Escherichia coli Fmu (Sun) protein (16S rRNA m5C 967 methyltransferase) whose structure has been determined []. In the eukaryota, the majority are annotated as being 'hypothetical protein', nucleolar protein or the Nop2/Sun (Fmu) family. Unlike their bacterial homologues, few of the eukaryotic members in this family have a the SAM binding signature. Despite this, Saccharomyces cerevisiae (Baker's yeast) Nop2p is a probable RNA m5C methyltransferase []. It is essential for processing and maturation of 27S pre-rRNA and large ribosomal subunit biogenesis []; localized to the nucleolus and is essential for viability []. Reduced Nop2p expression limits yeast growth and decreases levels of mature 60S ribosomal subunits while altering rRNA processing []. There is substantial identity between Nop2p and Homo sapiens (Human) p120 (NOL1), which is also called the proliferation-associated nucleolar antigen [, ].; PDB: 3M4X_A 2FRX_B 2YXL_A 1IXK_A 1SQG_A 1SQF_A 3M6U_B 3M6V_B 3M6W_A 3M6X_A ....
Probab=97.66 E-value=0.00024 Score=58.32 Aligned_cols=107 Identities=21% Similarity=0.204 Sum_probs=80.0
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CCCCceeEEE
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CPTELFDLIF 179 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~~~~fD~i~ 179 (231)
..++..|||..++.|.-+..++. ....+++.|+++.-+...+++..+.+.. ++.....|.... .....||.|+
T Consensus 83 ~~~~~~VLD~CAapGgKt~~la~~~~~~g~i~A~D~~~~Rl~~l~~~~~r~g~~-~v~~~~~D~~~~~~~~~~~~fd~Vl 161 (283)
T PF01189_consen 83 PQPGERVLDMCAAPGGKTTHLAELMGNKGEIVANDISPKRLKRLKENLKRLGVF-NVIVINADARKLDPKKPESKFDRVL 161 (283)
T ss_dssp TTTTSEEEESSCTTSHHHHHHHHHTTTTSEEEEEESSHHHHHHHHHHHHHTT-S-SEEEEESHHHHHHHHHHTTTEEEEE
T ss_pred ccccccccccccCCCCceeeeeecccchhHHHHhccCHHHHHHHHHHHHhcCCc-eEEEEeeccccccccccccccchhh
Confidence 56678999999999998888877 2358999999999999999998887654 477777777664 2234699999
Q ss_pred eCC------cccccCh--------------HHHHHHHHHHHhhc----CCCcEEEEEE
Q 026903 180 DYT------FFCAIEP--------------EMRAAWAQKIKDFL----KPDGELITLM 213 (231)
Q Consensus 180 ~~~------~~~~~~~--------------~~~~~~l~~~~~~L----~pgG~l~~~~ 213 (231)
.-. ++..-+. ..+.++|+...+.+ ||||+|+..+
T Consensus 162 vDaPCSg~G~i~r~p~~~~~~~~~~~~~l~~~Q~~iL~~a~~~~~~~~k~gG~lvYsT 219 (283)
T PF01189_consen 162 VDAPCSGLGTIRRNPDIKWRRSPEDIEKLAELQREILDNAAKLLNIDFKPGGRLVYST 219 (283)
T ss_dssp EECSCCCGGGTTTCTTHHHHE-TTHHHHHHHHHHHHHHHHHHCEHHHBEEEEEEEEEE
T ss_pred cCCCccchhhhhhccchhhcccccccchHHHHHHHHHHHHHHhhcccccCCCeEEEEe
Confidence 631 2221111 13368999999999 9999988766
No 260
>COG4798 Predicted methyltransferase [General function prediction only]
Probab=97.58 E-value=0.00022 Score=54.22 Aligned_cols=112 Identities=15% Similarity=0.135 Sum_probs=71.3
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHH----HH-HhccCCCCCceEEEEccCCCCCCCCceeE
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKA----EE-LSSSLPNAKFVSFLKADFFTWCPTELFDL 177 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a----~~-~~~~~~~~~~i~~~~~d~~~~~~~~~fD~ 177 (231)
..++.+|+|+=.|.|+++..++. +-..|+++-..+...-.. +. .........|.+.+..++....+.+..|+
T Consensus 46 lkpg~tVid~~PGgGy~TrI~s~~vgp~G~Vy~~~p~e~~~~~~~~~~r~~~~~~e~~~aN~e~~~~~~~A~~~pq~~d~ 125 (238)
T COG4798 46 LKPGATVIDLIPGGGYFTRIFSPAVGPKGKVYAYVPAELTKFAKREGPRLNAAAREPVYANVEVIGKPLVALGAPQKLDL 125 (238)
T ss_pred cCCCCEEEEEecCCccHhhhhchhcCCceeEEEecchhhcccccchhhhhhhhhhhhhhhhhhhhCCcccccCCCCcccc
Confidence 34668999999999999999987 222677665443311100 00 01111112245566666666556667777
Q ss_pred EEeCCcccc-----cChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 178 IFDYTFFCA-----IEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 178 i~~~~~~~~-----~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
++.....|. +.+....++.+.+.+.|||||++++.++...
T Consensus 126 ~~~~~~yhdmh~k~i~~~~A~~vna~vf~~LKPGGv~~V~dH~a~ 170 (238)
T COG4798 126 VPTAQNYHDMHNKNIHPATAAKVNAAVFKALKPGGVYLVEDHRAD 170 (238)
T ss_pred cccchhhhhhhccccCcchHHHHHHHHHHhcCCCcEEEEEecccc
Confidence 776544332 2345667889999999999999999998653
No 261
>PRK11524 putative methyltransferase; Provisional
Probab=97.55 E-value=0.00023 Score=58.47 Aligned_cols=59 Identities=19% Similarity=0.215 Sum_probs=52.8
Q ss_pred CCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhc
Q 026903 93 QPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSS 151 (231)
Q Consensus 93 ~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~ 151 (231)
.|...+++++.....++..|||..||+|..+....+.|.+++|+|++++.++.|++++.
T Consensus 193 kP~~L~erlI~~~S~~GD~VLDPF~GSGTT~~AA~~lgR~~IG~Ei~~~Y~~~a~~Rl~ 251 (284)
T PRK11524 193 KPEALLKRIILASSNPGDIVLDPFAGSFTTGAVAKASGRKFIGIEINSEYIKMGLRRLD 251 (284)
T ss_pred ChHHHHHHHHHHhCCCCCEEEECCCCCcHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHH
Confidence 34566788888777888999999999999999999999999999999999999999874
No 262
>PF11599 AviRa: RRNA methyltransferase AviRa; InterPro: IPR024268 This family of proteins includes the methyltransferase AviRa from Streptomyces viridochromogenes. This protein mediates the resistance to the antibiotic avilamycin. AviRa methylates a specific guanine base within the peptidyl-transferase loop of the 23S ribosomal RNA [].; PDB: 1O9H_A 1O9G_A.
Probab=97.54 E-value=0.0012 Score=51.03 Aligned_cols=106 Identities=17% Similarity=0.152 Sum_probs=65.9
Q ss_pred CCcEEEecCCCchHHHHhcC--CC--CeEEEEeCChHHHHHHHHHhccCC------------------------------
Q 026903 109 KGRALVPGCGTGYDVVAMAS--PE--RYVVGLEISDIAIKKAEELSSSLP------------------------------ 154 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~--~~v~~iD~s~~~i~~a~~~~~~~~------------------------------ 154 (231)
+-.+.|..||.|++.-.+.- .. .+|++.|+++.+++.|++|+.-..
T Consensus 52 p~tLyDPCCG~gyLLTVlGLLh~~~l~~v~aSDId~~aL~lA~kNL~LLt~eGL~~R~~eL~~~~e~~~kps~~eAl~sA 131 (246)
T PF11599_consen 52 PYTLYDPCCGSGYLLTVLGLLHRRRLRRVYASDIDEDALELARKNLSLLTPEGLEARREELRELYEQYGKPSHAEALESA 131 (246)
T ss_dssp -EEEEETT-TTSHHHHHHHHHTGGGEEEEEEEES-HHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred CeeeeccCCCccHHHHHHHHhhhHHHHhHhcccCCHHHHHHHHHhhhhccHhHHHHHHHHHHHHHHHcCCchHHHHHHHH
Confidence 36999999999998755543 22 389999999999999988876543
Q ss_pred ---------C--CCceEEEEccCCCCC------CCCceeEEEeCCccccc-------ChHHHHHHHHHHHhhcCCCcEEE
Q 026903 155 ---------N--AKFVSFLKADFFTWC------PTELFDLIFDYTFFCAI-------EPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 155 ---------~--~~~i~~~~~d~~~~~------~~~~fD~i~~~~~~~~~-------~~~~~~~~l~~~~~~L~pgG~l~ 210 (231)
. .....+.+.|++++. .....|+|+.-..+.++ +.+-...+|..+..+|.+++++.
T Consensus 132 ~RL~~~l~~~g~~~p~~~~~aDvf~~~~~~~~~~~~~~diViTDlPYG~~t~W~g~~~~~p~~~ml~~l~~vLp~~sVV~ 211 (246)
T PF11599_consen 132 DRLRERLAAEGGDEPHAIFRADVFDPSPLAVLDAGFTPDIVITDLPYGEMTSWQGEGSGGPVAQMLNSLAPVLPERSVVA 211 (246)
T ss_dssp HHHHHHHHHTTSS--EEEEE--TT-HHHHHHHHTT---SEEEEE--CCCSSSTTS---HHHHHHHHHHHHCCS-TT-EEE
T ss_pred HHHHHHHHhcCCCCchhheeecccCCchhhhhccCCCCCEEEecCCCcccccccCCCCCCcHHHHHHHHHhhCCCCcEEE
Confidence 1 123667888999832 23357999986554443 22445789999999996666666
Q ss_pred EEEc
Q 026903 211 TLMF 214 (231)
Q Consensus 211 ~~~~ 214 (231)
+++-
T Consensus 212 v~~k 215 (246)
T PF11599_consen 212 VSDK 215 (246)
T ss_dssp EEES
T ss_pred EecC
Confidence 6443
No 263
>PF01555 N6_N4_Mtase: DNA methylase; InterPro: IPR002941 This domain is found in DNA methylases. In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. This family contains both N-4 cytosine-specific DNA methylases and N-6 Adenine-specific DNA methylases. N-4 cytosine-specific DNA methylases (2.1.1.113 from EC) [] are enzymes that specifically methylate the amino group at the C-4 position of cytosines in DNA. Such enzymes are found as components of type II restriction-modification systems in prokaryotes. Such enzymes recognise a specific sequence in DNA and methylate a cytosine in that sequence. By this action they protect DNA from cleavage by type II restriction enzymes that recognise the same sequence. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence.; GO: 0003677 DNA binding, 0008170 N-methyltransferase activity, 0006306 DNA methylation; PDB: 2ZIF_A 2ZIE_A 2ZIG_A 1NW6_A 1NW8_A 1NW7_A 1NW5_A 1EG2_A 1BOO_A 1G60_B ....
Probab=97.48 E-value=0.00021 Score=56.28 Aligned_cols=57 Identities=26% Similarity=0.364 Sum_probs=45.8
Q ss_pred CCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHH
Q 026903 92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE 148 (231)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~ 148 (231)
..|...+++++.....++..|||..||+|..+....+.|.+.+|+|++++.++.|++
T Consensus 175 ~kP~~l~~~lI~~~t~~gdiVlDpF~GSGTT~~aa~~l~R~~ig~E~~~~y~~~a~~ 231 (231)
T PF01555_consen 175 QKPVELIERLIKASTNPGDIVLDPFAGSGTTAVAAEELGRRYIGIEIDEEYCEIAKK 231 (231)
T ss_dssp -S-HHHHHHHHHHHS-TT-EEEETT-TTTHHHHHHHHTT-EEEEEESSHHHHHHHHH
T ss_pred cCCHHHHHHHHHhhhccceeeehhhhccChHHHHHHHcCCeEEEEeCCHHHHHHhcC
Confidence 445666788888777788999999999999999999999999999999999998875
No 264
>PRK13699 putative methylase; Provisional
Probab=97.44 E-value=0.00042 Score=54.98 Aligned_cols=61 Identities=21% Similarity=0.287 Sum_probs=52.7
Q ss_pred CCCcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc
Q 026903 92 GQPAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSS 152 (231)
Q Consensus 92 ~~~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~ 152 (231)
..|...++.++.....++..|||..||+|..+....+.|.+++|+|++++..+.+.+++..
T Consensus 147 ~kP~~l~~~~i~~~s~~g~~vlDpf~Gsgtt~~aa~~~~r~~~g~e~~~~y~~~~~~r~~~ 207 (227)
T PRK13699 147 EKPVTSLQPLIESFTHPNAIVLDPFAGSGSTCVAALQSGRRYIGIELLEQYHRAGQQRLAA 207 (227)
T ss_pred CCcHHHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHH
Confidence 3456667778877677889999999999999999999999999999999999999888754
No 265
>KOG1501 consensus Arginine N-methyltransferase [General function prediction only]
Probab=97.39 E-value=0.00035 Score=59.37 Aligned_cols=71 Identities=13% Similarity=0.032 Sum_probs=58.9
Q ss_pred CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEe
Q 026903 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFD 180 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~ 180 (231)
..|||||.|+|.++...++.|+ .|+++|.-..|.+.|++....++..++|.++.---.+..- ....|+++.
T Consensus 68 v~vLdigtGTGLLSmMAvragaD~vtA~EvfkPM~d~arkI~~kng~SdkI~vInkrStev~vg~~~RadI~v~ 141 (636)
T KOG1501|consen 68 VFVLDIGTGTGLLSMMAVRAGADSVTACEVFKPMVDLARKIMHKNGMSDKINVINKRSTEVKVGGSSRADIAVR 141 (636)
T ss_pred EEEEEccCCccHHHHHHHHhcCCeEEeehhhchHHHHHHHHHhcCCCccceeeeccccceeeecCcchhhhhhH
Confidence 4899999999999999998776 8999999999999999999999999999998876655322 234666654
No 266
>COG2384 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=97.36 E-value=0.003 Score=49.11 Aligned_cols=73 Identities=12% Similarity=0.009 Sum_probs=63.8
Q ss_pred CcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCC
Q 026903 110 GRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYT 182 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~ 182 (231)
.++.|+||--+++...|.+.+ ..+++.|+++..++.|.+++...++.++++...+|..... +++.+|+|+...
T Consensus 18 ~~iaDIGsDHAYLp~~Lv~~~~~~~~va~eV~~gpl~~a~~~v~~~~l~~~i~vr~~dgl~~l~~~d~~d~ivIAG 93 (226)
T COG2384 18 ARIADIGSDHAYLPIYLVKNNPASTAVAGEVVPGPLESAIRNVKKNNLSERIDVRLGDGLAVLELEDEIDVIVIAG 93 (226)
T ss_pred CceeeccCchhHhHHHHHhcCCcceEEEeecccCHHHHHHHHHHhcCCcceEEEeccCCccccCccCCcCEEEEeC
Confidence 469999999999999999854 4899999999999999999999998899999999998855 444899988654
No 267
>COG4627 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.36 E-value=8e-05 Score=54.44 Aligned_cols=48 Identities=15% Similarity=0.218 Sum_probs=42.4
Q ss_pred CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 169 WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 169 ~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
++.+.+.|+|++.+++.|+.-+....+++.+.+.|||||+|-+..-+.
T Consensus 42 ~F~dns~d~iyaeHvlEHlt~~Eg~~alkechr~Lrp~G~LriAvPdl 89 (185)
T COG4627 42 MFEDNSVDAIYAEHVLEHLTYDEGTSALKECHRFLRPGGKLRIAVPDL 89 (185)
T ss_pred cCCCcchHHHHHHHHHHHHhHHHHHHHHHHHHHHhCcCcEEEEEcCCc
Confidence 566789999999999999998888999999999999999998866433
No 268
>PF02005 TRM: N2,N2-dimethylguanosine tRNA methyltransferase; InterPro: IPR002905 This enzyme 2.1.1.32 from EC uses S-adenosyl-L-methionine to methylate tRNA: S-AdoMet + tRNA = S-adenosyl-L-homocysteine + tRNA containing N2-methylguanine The TRM1 gene of Saccharomyces cerevisiae is necessary for the N2,N2-dimethylguanosine modification of both mitochondrial and cytoplasmic tRNAs []. The enzyme is found in both eukaryotes and archaea [].; GO: 0003723 RNA binding, 0004809 tRNA (guanine-N2-)-methyltransferase activity, 0008033 tRNA processing; PDB: 2YTZ_B 2DUL_A 2EJU_A 2EJT_A 3AXT_A 3AXS_A.
Probab=97.35 E-value=0.00053 Score=58.45 Aligned_cols=98 Identities=18% Similarity=0.106 Sum_probs=73.1
Q ss_pred CCcEEEecCCCchHHHHhcC--CC-CeEEEEeCChHHHHHHHHHhccCCCCC-ceEEEEccCCCCC--CCCceeEEEeCC
Q 026903 109 KGRALVPGCGTGYDVVAMAS--PE-RYVVGLEISDIAIKKAEELSSSLPNAK-FVSFLKADFFTWC--PTELFDLIFDYT 182 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~-~i~~~~~d~~~~~--~~~~fD~i~~~~ 182 (231)
+.+|||.-+|+|.=++..+. .+ .+|+.-|+|+++++..++|+..+++.+ ++++.+.|+.... ....||+|=
T Consensus 50 ~~~~lDalaasGvR~iRy~~E~~~~~~v~~NDi~~~a~~~i~~N~~~N~~~~~~~~v~~~DAn~ll~~~~~~fD~ID--- 126 (377)
T PF02005_consen 50 PIRVLDALAASGVRGIRYAKELAGVDKVTANDISPEAVELIKRNLELNGLEDERIEVSNMDANVLLYSRQERFDVID--- 126 (377)
T ss_dssp -EEEEETT-TTSHHHHHHHHH-SSECEEEEEES-HHHHHHHHHHHHHCT-SGCCEEEEES-HHHHHCHSTT-EEEEE---
T ss_pred CceEEeccccccHHHHHHHHHcCCCCEEEEecCCHHHHHHHHHhHhhccccCceEEEehhhHHHHhhhccccCCEEE---
Confidence 35999999999977666665 34 489999999999999999998888777 6888888888844 567899996
Q ss_pred cccccCh-HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 183 FFCAIEP-EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 183 ~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
++| -....+|+...+.++.||.|.+..
T Consensus 127 ----lDPfGSp~pfldsA~~~v~~gGll~vTa 154 (377)
T PF02005_consen 127 ----LDPFGSPAPFLDSALQAVKDGGLLCVTA 154 (377)
T ss_dssp ----E--SS--HHHHHHHHHHEEEEEEEEEEE
T ss_pred ----eCCCCCccHhHHHHHHHhhcCCEEEEec
Confidence 332 223568999999999999998754
No 269
>PF04989 CmcI: Cephalosporin hydroxylase; InterPro: IPR007072 This entry contains Rhamnosyl O-methyltransferase which catalyses the O-methylation of the hydroxyl group located on C-2 of the first rhamnosyl residue linked to the phenolic group of glycosylated phenolphthiocerol dimycocerosates (PGL) and p-hydroxybenzoic acid derivatives (p-HBAD) []. Members of this family are about 220 amino acids long. It also includes the CmcI protein O85726 from SWISSPROT, which is presumed to represent the cephalosporin-7--hydroxylase []. However this has not been experimentally verified.; GO: 0008168 methyltransferase activity, 0008610 lipid biosynthetic process; PDB: 2BR4_B 2BR3_E 2BR5_E 2BM8_J 2BM9_E.
Probab=97.34 E-value=0.0011 Score=51.31 Aligned_cols=103 Identities=17% Similarity=0.133 Sum_probs=54.6
Q ss_pred CCCCCcEEEecCCCchHHHHhcC------CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---------
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--------- 170 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--------- 170 (231)
..++..|+|+|.-.|.-+..+|+ ...+|+|+|++...... +....++..++|+++++|..++.
T Consensus 30 ~~kPd~IIE~Gi~~GGSli~~A~ml~~~~~~~~VigiDIdir~~~~--~a~e~hp~~~rI~~i~Gds~d~~~~~~v~~~~ 107 (206)
T PF04989_consen 30 ELKPDLIIETGIAHGGSLIFWASMLELLGGKGKVIGIDIDIRPHNR--KAIESHPMSPRITFIQGDSIDPEIVDQVRELA 107 (206)
T ss_dssp HH--SEEEEE--TTSHHHHHHHHHHHHTT---EEEEEES-GTT--S---GGGG----TTEEEEES-SSSTHHHHTSGSS-
T ss_pred HhCCCeEEEEecCCCchHHHHHHHHHHhCCCceEEEEeCCcchhch--HHHhhccccCceEEEECCCCCHHHHHHHHHhh
Confidence 34568999999999988877765 33599999996443222 22333445578999999988721
Q ss_pred CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
......+|+.-..-.| +...+.|+.+..++++|+++++.+
T Consensus 108 ~~~~~vlVilDs~H~~---~hvl~eL~~y~plv~~G~Y~IVeD 147 (206)
T PF04989_consen 108 SPPHPVLVILDSSHTH---EHVLAELEAYAPLVSPGSYLIVED 147 (206)
T ss_dssp ---SSEEEEESS-------SSHHHHHHHHHHT--TT-EEEETS
T ss_pred ccCCceEEEECCCccH---HHHHHHHHHhCccCCCCCEEEEEe
Confidence 1123445553222111 222456788999999999998855
No 270
>COG1889 NOP1 Fibrillarin-like rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.34 E-value=0.0043 Score=47.67 Aligned_cols=110 Identities=18% Similarity=0.201 Sum_probs=79.6
Q ss_pred CCCcEEEecCCCchHHHHhcC-C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----CCceeEEEeC
Q 026903 108 PKGRALVPGCGTGYDVVAMAS-P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDY 181 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~-~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~fD~i~~~ 181 (231)
++.+||=+|+.+|...-.++. - ...++++|+|+......-..+.+. +|+-.+..|+..+.. -+..|+|+.-
T Consensus 76 ~g~~VLYLGAasGTTvSHVSDIv~~G~iYaVEfs~R~~reLl~~a~~R---~Ni~PIL~DA~~P~~Y~~~Ve~VDviy~D 152 (231)
T COG1889 76 EGSKVLYLGAASGTTVSHVSDIVGEGRIYAVEFSPRPMRELLDVAEKR---PNIIPILEDARKPEKYRHLVEKVDVIYQD 152 (231)
T ss_pred CCCEEEEeeccCCCcHhHHHhccCCCcEEEEEecchhHHHHHHHHHhC---CCceeeecccCCcHHhhhhcccccEEEEe
Confidence 458999999999998888877 2 247999999999876665555443 468888888887431 2468999853
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCC
Q 026903 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 224 (231)
-+ .+++..-+..+....||+||.+++.--..+-+.+..|
T Consensus 153 VA----Qp~Qa~I~~~Na~~FLk~~G~~~i~iKArSIdvT~dp 191 (231)
T COG1889 153 VA----QPNQAEILADNAEFFLKKGGYVVIAIKARSIDVTADP 191 (231)
T ss_pred cC----CchHHHHHHHHHHHhcccCCeEEEEEEeecccccCCH
Confidence 22 2355566778889999999988776665555555544
No 271
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=97.33 E-value=0.0009 Score=55.82 Aligned_cols=95 Identities=21% Similarity=0.181 Sum_probs=69.3
Q ss_pred CCCCCcEEEecCC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeC
Q 026903 106 ALPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDY 181 (231)
Q Consensus 106 ~~~~~~vLDiGcG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~ 181 (231)
..|+.+|+-+|+| .|..+.++++ .|++|+++|.+++-.+.|++.... .++...-.+... .+.||+|+..
T Consensus 164 ~~pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~~~K~e~a~~lGAd-------~~i~~~~~~~~~~~~~~~d~ii~t 236 (339)
T COG1064 164 VKPGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRSEEKLELAKKLGAD-------HVINSSDSDALEAVKEIADAIIDT 236 (339)
T ss_pred CCCCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCChHHHHHHHHhCCc-------EEEEcCCchhhHHhHhhCcEEEEC
Confidence 4567899999988 3577788888 889999999999999999986532 334433111111 1249999965
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
.. . ..+....+.|++||.++++..++
T Consensus 237 v~-~--------~~~~~~l~~l~~~G~~v~vG~~~ 262 (339)
T COG1064 237 VG-P--------ATLEPSLKALRRGGTLVLVGLPG 262 (339)
T ss_pred CC-h--------hhHHHHHHHHhcCCEEEEECCCC
Confidence 44 2 23677889999999999999885
No 272
>KOG1562 consensus Spermidine synthase [Amino acid transport and metabolism]
Probab=97.14 E-value=0.0026 Score=51.58 Aligned_cols=106 Identities=22% Similarity=0.209 Sum_probs=78.3
Q ss_pred CCCcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCC---CCCceEEEEccCCCC---CCCCceeEEE
Q 026903 108 PKGRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLP---NAKFVSFLKADFFTW---CPTELFDLIF 179 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~---~~~~i~~~~~d~~~~---~~~~~fD~i~ 179 (231)
.+++||-||.|.|.+.+..++. -.++.-+|++...++..++...... -.+++.+.-||-..+ ...++||+|+
T Consensus 121 npkkvlVVgggDggvlrevikH~~ve~i~~~eiD~~Vie~sk~y~p~la~gy~~~~v~l~iGDG~~fl~~~~~~~~dVii 200 (337)
T KOG1562|consen 121 NPKKVLVVGGGDGGVLREVIKHKSVENILLCEIDENVIESSKQYLPTLACGYEGKKVKLLIGDGFLFLEDLKENPFDVII 200 (337)
T ss_pred CCCeEEEEecCCccceeeeeccccccceeeehhhHHHHHHHHHHhHHHhcccCCCceEEEeccHHHHHHHhccCCceEEE
Confidence 4589999999999999888873 2389999999999998887654321 235788888887773 3467999999
Q ss_pred eCCcccccCh--HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 180 DYTFFCAIEP--EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 180 ~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
.-..=.-.+. -....+...+.+.||+||+++...
T Consensus 201 ~dssdpvgpa~~lf~~~~~~~v~~aLk~dgv~~~q~ 236 (337)
T KOG1562|consen 201 TDSSDPVGPACALFQKPYFGLVLDALKGDGVVCTQG 236 (337)
T ss_pred EecCCccchHHHHHHHHHHHHHHHhhCCCcEEEEec
Confidence 6432221221 234678889999999999988744
No 273
>KOG2793 consensus Putative N2,N2-dimethylguanosine tRNA methyltransferase [RNA processing and modification]
Probab=97.13 E-value=0.0033 Score=50.19 Aligned_cols=103 Identities=17% Similarity=0.052 Sum_probs=66.9
Q ss_pred CCcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhcc-----CCCCCceEEEEccCCCCC----CCCc-eeE
Q 026903 109 KGRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSS-----LPNAKFVSFLKADFFTWC----PTEL-FDL 177 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~-----~~~~~~i~~~~~d~~~~~----~~~~-fD~ 177 (231)
..+|||+|+|+|..+..++. .+.+|+..|.... +.....+... .+....+.....++.+.. .... +|+
T Consensus 87 ~~~vlELGsGtglvG~~aa~~~~~~v~ltD~~~~-~~~L~~~~~~~~~~l~~~g~~v~v~~L~Wg~~~~~~~~~~~~~Dl 165 (248)
T KOG2793|consen 87 YINVLELGSGTGLVGILAALLLGAEVVLTDLPKV-VENLKFNRDKNNIALNQLGGSVIVAILVWGNALDVSFRLPNPFDL 165 (248)
T ss_pred ceeEEEecCCccHHHHHHHHHhcceeccCCchhh-HHHHHHhhhhhhhhhhhcCCceeEEEEecCCcccHhhccCCcccE
Confidence 45799999999988888877 6778988887543 3333332111 112224555555555522 1223 999
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
|+++.++++. +....++..++..|..+|.+++..+
T Consensus 166 ilasDvvy~~--~~~e~Lv~tla~ll~~~~~i~l~~~ 200 (248)
T KOG2793|consen 166 ILASDVVYEE--ESFEGLVKTLAFLLAKDGTIFLAYP 200 (248)
T ss_pred EEEeeeeecC--CcchhHHHHHHHHHhcCCeEEEEEe
Confidence 9999888664 4556678888888999995554443
No 274
>COG5459 Predicted rRNA methylase [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.00066 Score=56.24 Aligned_cols=110 Identities=17% Similarity=0.210 Sum_probs=68.2
Q ss_pred CCCCCcEEEecCCCchHHHHhcC--CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEE
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLI 178 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~--~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i 178 (231)
...+.+|||+|.|.|.-+..+.. +.. .++.++.|+..-+.......... .....+...|+.. ..+.+.|+++
T Consensus 111 dfapqsiLDvG~GPgtgl~A~n~i~Pdl~sa~ile~sp~lrkV~~tl~~nv~-t~~td~r~s~vt~dRl~lp~ad~ytl~ 189 (484)
T COG5459 111 DFAPQSILDVGAGPGTGLWALNDIWPDLKSAVILEASPALRKVGDTLAENVS-TEKTDWRASDVTEDRLSLPAADLYTLA 189 (484)
T ss_pred CcCcchhhccCCCCchhhhhhcccCCCchhhhhhccCHHHHHHHHHHHhhcc-cccCCCCCCccchhccCCCccceeehh
Confidence 34567899999999988777665 333 67788888876555444322111 1122233333333 3445678887
Q ss_pred EeCCcccccC-hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 179 FDYTFFCAIE-PEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 179 ~~~~~~~~~~-~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+...-+-+.. ......+++.+..+++|||.|++++-..
T Consensus 190 i~~~eLl~d~~ek~i~~~ie~lw~l~~~gg~lVivErGt 228 (484)
T COG5459 190 IVLDELLPDGNEKPIQVNIERLWNLLAPGGHLVIVERGT 228 (484)
T ss_pred hhhhhhccccCcchHHHHHHHHHHhccCCCeEEEEeCCC
Confidence 7554443322 1233458999999999999999987543
No 275
>COG0286 HsdM Type I restriction-modification system methyltransferase subunit [Defense mechanisms]
Probab=97.06 E-value=0.0078 Score=53.27 Aligned_cols=120 Identities=20% Similarity=0.225 Sum_probs=80.2
Q ss_pred CcHHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcC----C--CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC
Q 026903 94 PAPIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMAS----P--ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF 166 (231)
Q Consensus 94 ~~~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~----~--~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~ 166 (231)
|+....-++..... +..+|+|..||+|.+.....+ . ...++|.|.++.....|+.++--++....+....+|-
T Consensus 171 P~~v~~liv~~l~~~~~~~i~DpacGsgg~l~~a~~~~~~~~~~~~~yGqE~~~~t~~l~~mN~~lhgi~~~~~i~~~dt 250 (489)
T COG0286 171 PREVSELIVELLDPEPRNSIYDPACGSGGMLLQAAKYLKRHQDEIFIYGQEINDTTYRLAKMNLILHGIEGDANIRHGDT 250 (489)
T ss_pred hHHHHHHHHHHcCCCCCCeecCCCCchhHHHHHHHHHHHhhccceeEEEEeCCHHHHHHHHHHHHHhCCCcccccccccc
Confidence 44444444443322 447999999999988776655 2 2569999999999999999987776543345555555
Q ss_pred CC-CCC-----CCceeEEEeCCccc---c------------------cCh--HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 167 FT-WCP-----TELFDLIFDYTFFC---A------------------IEP--EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 167 ~~-~~~-----~~~fD~i~~~~~~~---~------------------~~~--~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
.. +.. ...||+|+++..+. + +++ ..-..+++.+...|+|||+..++.
T Consensus 251 l~~~~~~~~~~~~~~D~viaNPPf~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~~h~~~~l~~~g~aaivl 326 (489)
T COG0286 251 LSNPKHDDKDDKGKFDFVIANPPFSGKGWGGDLLESEQDERFFFYGVFPTKNSADLAFLQHILYKLKPGGRAAIVL 326 (489)
T ss_pred ccCCcccccCCccceeEEEeCCCCCccccccccccccccccccccCCCCCCCchHHHHHHHHHHhcCCCceEEEEe
Confidence 44 222 24799999876553 0 000 122689999999999998655443
No 276
>KOG2671 consensus Putative RNA methylase [Replication, recombination and repair]
Probab=97.02 E-value=0.0012 Score=54.64 Aligned_cols=108 Identities=20% Similarity=0.188 Sum_probs=78.1
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHH-------HHHhccCCCCC-ceEEEEccCCCC--CCCCce
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKA-------EELSSSLPNAK-FVSFLKADFFTW--CPTELF 175 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a-------~~~~~~~~~~~-~i~~~~~d~~~~--~~~~~f 175 (231)
..++..|+|..-|||.+....+..|+.|+|.|++-.++... +.|+..++..+ -+.+..+|..++ -....|
T Consensus 206 v~pGdivyDPFVGTGslLvsaa~FGa~viGtDIDyr~vragrg~~~si~aNFkQYg~~~~fldvl~~D~sn~~~rsn~~f 285 (421)
T KOG2671|consen 206 VKPGDIVYDPFVGTGSLLVSAAHFGAYVIGTDIDYRTVRAGRGEDESIKANFKQYGSSSQFLDVLTADFSNPPLRSNLKF 285 (421)
T ss_pred cCCCCEEecCccccCceeeehhhhcceeeccccchheeecccCCCcchhHhHHHhCCcchhhheeeecccCcchhhccee
Confidence 45778999999999999999999999999999999888732 34555555333 356778888873 235589
Q ss_pred eEEEeCCccc------------------------ccCh-------HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 176 DLIFDYTFFC------------------------AIEP-------EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 176 D~i~~~~~~~------------------------~~~~-------~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
|.|+|-..+. |.|. ...-.+|.-..+.|..||+|++..
T Consensus 286 DaIvcDPPYGVRe~~rk~~~k~~~r~~~~~~~~~h~p~~~~ysl~~~v~dll~fss~~L~~ggrlv~w~ 354 (421)
T KOG2671|consen 286 DAIVCDPPYGVREGARKTGKKKSVRTTEESSRGDHYPSTEQYSLSSLVYDLLCFSSRRLVDGGRLVFWL 354 (421)
T ss_pred eEEEeCCCcchhhhhhhhcccCcccCcccccccccCCccchhHHHHHHhhHHHhhHhhhhcCceEEEec
Confidence 9999853221 2211 122466777889999999997643
No 277
>PF03492 Methyltransf_7: SAM dependent carboxyl methyltransferase; InterPro: IPR005299 This family of plant methyltransferases contains enzymes that act on a variety of substrates including salicylic acid, jasmonic acid and 7-Methylxanthine. Caffeine is synthesized through sequential three-step methylation of xanthine derivatives at positions 7-N, 3-N, and 1-N. The protein 7-methylxanthine methyltransferase (designated as CaMXMT) catalyses the second step to produce theobromine [].; GO: 0008168 methyltransferase activity; PDB: 2EFJ_A 1M6E_X 2EG5_C 3B5I_B.
Probab=96.98 E-value=0.0082 Score=50.48 Aligned_cols=108 Identities=14% Similarity=0.151 Sum_probs=60.0
Q ss_pred CcEEEecCCCchHHHHhcC------------CC------CeEEEEeCChHHHHHHHH-------HhccCCCCCceEEEEc
Q 026903 110 GRALVPGCGTGYDVVAMAS------------PE------RYVVGLEISDIAIKKAEE-------LSSSLPNAKFVSFLKA 164 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~------------~~------~~v~~iD~s~~~i~~a~~-------~~~~~~~~~~i~~~~~ 164 (231)
-+|+|+||..|.+++.+.. .+ .+|+.-|+-..=....-+ .....+ .--+.-+.+
T Consensus 18 ~~iaD~GcS~G~Nsl~~~~~ii~~i~~~~~~~~~~~~~e~~v~~nDlP~NDFn~lF~~l~~~~~~~~~~~-~~f~~gvpg 96 (334)
T PF03492_consen 18 FRIADLGCSSGPNSLLAVSNIIDAIRERCRSSNNQPPPEFQVFFNDLPSNDFNTLFKSLPSFQQSLKKFR-NYFVSGVPG 96 (334)
T ss_dssp EEEEEES--SSHHHHHHHHHHHHHHHHHHHCTT-SS--EEEEEEEE-TTS-HHHHHHCHHHHHHHHHHTT-SEEEEEEES
T ss_pred eEEEecCCCCCccHHHHHHHHHHHHHHHhhhhcCCCCCeEEEEeCCCCCccHHHHHHhChhhhhccCCCc-eEEEEecCc
Confidence 6999999999999877753 12 378888865432221111 111110 011334567
Q ss_pred cCCC-CCCCCceeEEEeCCcccccCh--------------------------H-----------HHHHHHHHHHhhcCCC
Q 026903 165 DFFT-WCPTELFDLIFDYTFFCAIEP--------------------------E-----------MRAAWAQKIKDFLKPD 206 (231)
Q Consensus 165 d~~~-~~~~~~fD~i~~~~~~~~~~~--------------------------~-----------~~~~~l~~~~~~L~pg 206 (231)
.+.+ .+|.++.|++++..++||++. + +...+|+.=++=|+||
T Consensus 97 SFy~rLfP~~Svh~~~Ss~alHWLS~vP~~l~~~~~~~~Nkg~i~~~~~~~~~v~~ay~~Qf~~D~~~FL~~Ra~ELv~G 176 (334)
T PF03492_consen 97 SFYGRLFPSNSVHFGHSSYALHWLSQVPEELVDKSSPAWNKGNIYISRTSPPEVAKAYAKQFQKDFSSFLKARAEELVPG 176 (334)
T ss_dssp -TTS--S-TT-EEEEEEES-TTB-SSS-CCCCTTTSTTTSTTTSSSSTTS-HHHHHHHHHHHHHHHHHHHHHHHHHEEEE
T ss_pred hhhhccCCCCceEEEEEechhhhcccCCcccccccccccccCcEEEecCCCHHHHHHHHHHHHHHHHHHHHHhhheeccC
Confidence 7777 788899999999999998641 0 1133444444578999
Q ss_pred cEEEEEEccCCC
Q 026903 207 GELITLMFPISD 218 (231)
Q Consensus 207 G~l~~~~~~~~~ 218 (231)
|++++.....+.
T Consensus 177 G~mvl~~~gr~~ 188 (334)
T PF03492_consen 177 GRMVLTFLGRDE 188 (334)
T ss_dssp EEEEEEEEE-ST
T ss_pred cEEEEEEeeccc
Confidence 999887776554
No 278
>KOG1227 consensus Putative methyltransferase [General function prediction only]
Probab=96.95 E-value=0.00051 Score=55.63 Aligned_cols=99 Identities=13% Similarity=-0.008 Sum_probs=74.1
Q ss_pred CCcEEEecCCCchHHH-HhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903 109 KGRALVPGCGTGYDVV-AMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~-~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~ 186 (231)
+..|.|+=+|-|++++ ++...|+ .|+++|.+|..++..+.+++.+.+.++..+..+|-..+.+....|-|....
T Consensus 195 ~eviVDLYAGIGYFTlpflV~agAk~V~A~EwNp~svEaLrR~~~~N~V~~r~~i~~gd~R~~~~~~~AdrVnLGL---- 270 (351)
T KOG1227|consen 195 GEVIVDLYAGIGYFTLPFLVTAGAKTVFACEWNPWSVEALRRNAEANNVMDRCRITEGDNRNPKPRLRADRVNLGL---- 270 (351)
T ss_pred cchhhhhhcccceEEeehhhccCccEEEEEecCHHHHHHHHHHHHhcchHHHHHhhhccccccCccccchheeecc----
Confidence 4799999999999999 7777776 899999999999999999988887778888888888888778888887432
Q ss_pred cChHHHHHHHHHHHhhcCCCc--EEEEEE
Q 026903 187 IEPEMRAAWAQKIKDFLKPDG--ELITLM 213 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG--~l~~~~ 213 (231)
+|-. ++-.-...++|+|.| ++.|.+
T Consensus 271 lPSs--e~~W~~A~k~Lk~eggsilHIHe 297 (351)
T KOG1227|consen 271 LPSS--EQGWPTAIKALKPEGGSILHIHE 297 (351)
T ss_pred cccc--ccchHHHHHHhhhcCCcEEEEec
Confidence 2211 122334556666654 454443
No 279
>TIGR00027 mthyl_TIGR00027 methyltransferase, putative, TIGR00027 family. This model represents a set of probable methyltransferases, about 300 amino acids long, with essentially full length homology. Members share an N-terminal region described by Pfam model pfam02409. Included are a paralogous family of 12 proteins in Mycobacterium tuberculosis, plus close homologs in related species, a family of 8 in the archaeon Methanosarcina acetivorans, and small numbers of members in other species, including plants.
Probab=96.92 E-value=0.03 Score=45.45 Aligned_cols=106 Identities=12% Similarity=0.105 Sum_probs=75.2
Q ss_pred CcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCC--CCCceEEEEccCCC-C--------CCCCceeE
Q 026903 110 GRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLP--NAKFVSFLKADFFT-W--------CPTELFDL 177 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~--~~~~i~~~~~d~~~-~--------~~~~~fD~ 177 (231)
..|+.+|||--.-...+..+ +.+++=+|. |+.++.-++.+...+ ...+.+++..|+.+ + +.....-+
T Consensus 83 ~qvV~LGaGlDTr~~Rl~~~~~~~~~EvD~-P~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~w~~~L~~~gfd~~~ptl 161 (260)
T TIGR00027 83 RQVVILGAGLDTRAYRLPWPDGTRVFEVDQ-PAVLAFKEKVLAELGAEPPAHRRAVPVDLRQDWPAALAAAGFDPTAPTA 161 (260)
T ss_pred cEEEEeCCccccHHHhcCCCCCCeEEECCC-hHHHHHHHHHHHHcCCCCCCceEEeccCchhhHHHHHHhCCCCCCCCee
Confidence 57999999987666666543 445666665 556666556555422 23568889999863 1 11234567
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+++-.++.+++++...++++.+.+...||+.|++....+
T Consensus 162 ~i~EGvl~YL~~~~v~~ll~~i~~~~~~gs~l~~d~~~~ 200 (260)
T TIGR00027 162 WLWEGLLMYLTEEAVDALLAFIAELSAPGSRLAFDYVRP 200 (260)
T ss_pred eeecchhhcCCHHHHHHHHHHHHHhCCCCcEEEEEeccc
Confidence 888899999999999999999999988999887755443
No 280
>PF04445 SAM_MT: Putative SAM-dependent methyltransferase; InterPro: IPR007536 This family of proteins is functionally uncharacterised.; PDB: 2PGX_A 2OYR_A 2R6Z_A 2PKW_A.
Probab=96.90 E-value=0.0013 Score=51.94 Aligned_cols=77 Identities=22% Similarity=0.338 Sum_probs=47.2
Q ss_pred CcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHH---HhccCCC-----CCceEEEEccCCCCC--CCCceeEEE
Q 026903 110 GRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE---LSSSLPN-----AKFVSFLKADFFTWC--PTELFDLIF 179 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~---~~~~~~~-----~~~i~~~~~d~~~~~--~~~~fD~i~ 179 (231)
.+|||.=+|-|..+..++..|.+|+++|-||-.....+. +...... ..+|+++++|..++. +..+||+|+
T Consensus 77 ~~VLDaTaGLG~Da~vlA~~G~~V~~lErspvia~Ll~dGL~r~~~~~~~~~~~~~ri~l~~~d~~~~L~~~~~s~DVVY 156 (234)
T PF04445_consen 77 PSVLDATAGLGRDAFVLASLGCKVTGLERSPVIAALLKDGLKRAQQDPELLAEAMRRIQLIHGDALEYLRQPDNSFDVVY 156 (234)
T ss_dssp --EEETT-TTSHHHHHHHHHT--EEEEE--HHHHHHHHHHHHHHHHSTTTHHHHHHHEEEEES-CCCHCCCHSS--SEEE
T ss_pred CEEEECCCcchHHHHHHHccCCeEEEEECCHHHHHHHHHHHHHHHhCcHhHHHHHhCCEEEcCCHHHHHhhcCCCCCEEE
Confidence 499999999999999999889999999999987655443 2222111 137999999999954 356999999
Q ss_pred eCCcccc
Q 026903 180 DYTFFCA 186 (231)
Q Consensus 180 ~~~~~~~ 186 (231)
.-..|.+
T Consensus 157 ~DPMFp~ 163 (234)
T PF04445_consen 157 FDPMFPE 163 (234)
T ss_dssp E--S---
T ss_pred ECCCCCC
Confidence 8776665
No 281
>PHA01634 hypothetical protein
Probab=96.90 E-value=0.003 Score=44.75 Aligned_cols=49 Identities=18% Similarity=0.186 Sum_probs=43.6
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCC
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLP 154 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~ 154 (231)
...+++|+|||.+.|.-++.++-.|+ .|+++|.++...+..+++...+.
T Consensus 26 dvk~KtV~dIGA~iGdSaiYF~l~GAK~Vva~E~~~kl~k~~een~k~nn 75 (156)
T PHA01634 26 NVYQRTIQIVGADCGSSALYFLLRGASFVVQYEKEEKLRKKWEEVCAYFN 75 (156)
T ss_pred eecCCEEEEecCCccchhhHHhhcCccEEEEeccCHHHHHHHHHHhhhhe
Confidence 45678999999999999999999887 89999999999999999876553
No 282
>COG3129 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=96.87 E-value=0.0056 Score=48.01 Aligned_cols=91 Identities=16% Similarity=0.136 Sum_probs=61.7
Q ss_pred HHHHHHHHcC--CC--CCCcEEEecCCCchHHHHhc---CCCCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEEccCC
Q 026903 96 PIIVHLHQSG--AL--PKGRALVPGCGTGYDVVAMA---SPERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFF 167 (231)
Q Consensus 96 ~~~~~~~~~~--~~--~~~~vLDiGcG~G~~~~~l~---~~~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~ 167 (231)
+.+.+++... .. ++.++||||.|..- .+.|. +.|.+.+|.|+++..++.|+..+..+ ++...|+.....-.
T Consensus 62 h~laDLL~s~~g~~~~~~i~~LDIGvGAnC-IYPliG~~eYgwrfvGseid~~sl~sA~~ii~~N~~l~~~I~lr~qk~~ 140 (292)
T COG3129 62 HHLADLLASTSGQIPGKNIRILDIGVGANC-IYPLIGVHEYGWRFVGSEIDSQSLSSAKAIISANPGLERAIRLRRQKDS 140 (292)
T ss_pred HHHHHHHHhcCCCCCcCceEEEeeccCccc-ccccccceeecceeecCccCHHHHHHHHHHHHcCcchhhheeEEeccCc
Confidence 3355555543 12 34699999998742 33333 37889999999999999999988776 44445666544322
Q ss_pred C-CC-----CCCceeEEEeCCccccc
Q 026903 168 T-WC-----PTELFDLIFDYTFFCAI 187 (231)
Q Consensus 168 ~-~~-----~~~~fD~i~~~~~~~~~ 187 (231)
. .+ ..+.||+.+|+..||.-
T Consensus 141 ~~if~giig~nE~yd~tlCNPPFh~s 166 (292)
T COG3129 141 DAIFNGIIGKNERYDATLCNPPFHDS 166 (292)
T ss_pred cccccccccccceeeeEecCCCcchh
Confidence 2 22 24689999999988753
No 283
>PLN02668 indole-3-acetate carboxyl methyltransferase
Probab=96.82 E-value=0.011 Score=50.49 Aligned_cols=109 Identities=14% Similarity=0.187 Sum_probs=65.2
Q ss_pred CCcEEEecCCCchHHHHhcC-----------------CCCeEEEEeCChHHHHHHHHHhccC--------C----CCCc-
Q 026903 109 KGRALVPGCGTGYDVVAMAS-----------------PERYVVGLEISDIAIKKAEELSSSL--------P----NAKF- 158 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~-----------------~~~~v~~iD~s~~~i~~a~~~~~~~--------~----~~~~- 158 (231)
..+|+|+|||+|.+++.+.. +..+|..-|....=....-+.+... . ...+
T Consensus 64 ~~~iaDlGcs~G~ntl~~vs~iI~~i~~~~~~~~~~~pe~qv~~nDLP~NDFNtlF~~L~~~~~~~~~~~~~~~~~~~~~ 143 (386)
T PLN02668 64 PFTAVDLGCSSGSNTIHIIDVIVKHMSKRYESAGLDPPEFSAFFSDLPSNDFNTLFQLLPPLANYGGSMEECLAASGHRS 143 (386)
T ss_pred ceeEEEecCCCCccHHHHHHHHHHHHHHHhhhcCCCCCcceEEecCCCCCCHHHHHhhchhhhhhhcchhhhccccCCCc
Confidence 46999999999988766632 1246776675433222111111100 0 0001
Q ss_pred --eEEEEccCCC-CCCCCceeEEEeCCcccccCh--H----------------------------------HHHHHHHHH
Q 026903 159 --VSFLKADFFT-WCPTELFDLIFDYTFFCAIEP--E----------------------------------MRAAWAQKI 199 (231)
Q Consensus 159 --i~~~~~d~~~-~~~~~~fD~i~~~~~~~~~~~--~----------------------------------~~~~~l~~~ 199 (231)
+.-+.+.+.. .+|.++.+++++...+||++. + +...+|+.=
T Consensus 144 ~f~~gvpGSFY~RLfP~~Slh~~~Ss~slHWLS~vP~~l~d~~s~~~Nkg~iyi~~~s~~v~~aY~~Qf~~D~~~FL~~R 223 (386)
T PLN02668 144 YFAAGVPGSFYRRLFPARSIDVFHSAFSLHWLSQVPESVTDKRSAAYNKGRVFIHGASESTANAYKRQFQADLAGFLRAR 223 (386)
T ss_pred eEEEecCccccccccCCCceEEEEeeccceecccCchhhccCCcccccCCceEecCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 1223345555 778899999999999999752 1 123344444
Q ss_pred HhhcCCCcEEEEEEccCC
Q 026903 200 KDFLKPDGELITLMFPIS 217 (231)
Q Consensus 200 ~~~L~pgG~l~~~~~~~~ 217 (231)
++-|.|||++++......
T Consensus 224 a~ELvpGG~mvl~~~Gr~ 241 (386)
T PLN02668 224 AQEMKRGGAMFLVCLGRT 241 (386)
T ss_pred HHHhccCcEEEEEEecCC
Confidence 567899999988776664
No 284
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=96.80 E-value=0.012 Score=52.15 Aligned_cols=98 Identities=18% Similarity=0.315 Sum_probs=66.1
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-----------C----
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----------W---- 169 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----------~---- 169 (231)
.++.+|+-+|||. |..+...++ .|..|+++|.+++.++.+++.-. ++...|..+ .
T Consensus 163 ~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~a~D~~~~rle~aeslGA--------~~v~i~~~e~~~~~~gya~~~s~~~ 234 (509)
T PRK09424 163 VPPAKVLVIGAGVAGLAAIGAAGSLGAIVRAFDTRPEVAEQVESMGA--------EFLELDFEEEGGSGDGYAKVMSEEF 234 (509)
T ss_pred cCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcCC--------eEEEeccccccccccchhhhcchhH
Confidence 3578999999997 777777777 78899999999999998887321 221111100 0
Q ss_pred -------CCC--CceeEEEeCCcccccChHHHHHH-HHHHHhhcCCCcEEEEEEcc
Q 026903 170 -------CPT--ELFDLIFDYTFFCAIEPEMRAAW-AQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 170 -------~~~--~~fD~i~~~~~~~~~~~~~~~~~-l~~~~~~L~pgG~l~~~~~~ 215 (231)
+.+ ..+|+|+.......-+ .+.+ .++..+.+||||+++.+..+
T Consensus 235 ~~~~~~~~~~~~~gaDVVIetag~pg~~---aP~lit~~~v~~mkpGgvIVdvg~~ 287 (509)
T PRK09424 235 IKAEMALFAEQAKEVDIIITTALIPGKP---APKLITAEMVASMKPGSVIVDLAAE 287 (509)
T ss_pred HHHHHHHHHhccCCCCEEEECCCCCccc---CcchHHHHHHHhcCCCCEEEEEccC
Confidence 011 3699999765432211 1233 48899999999998877664
No 285
>KOG1122 consensus tRNA and rRNA cytosine-C5-methylase (nucleolar protein NOL1/NOP2) [RNA processing and modification]
Probab=96.71 E-value=0.016 Score=49.40 Aligned_cols=108 Identities=14% Similarity=0.098 Sum_probs=77.2
Q ss_pred CCCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC----CCCCceeEE
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW----CPTELFDLI 178 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~----~~~~~fD~i 178 (231)
..++.+|||..+..|.=+..+|. .-..|++.|.+..-+...+.++.+.++. +......|..++ ++. +||-|
T Consensus 239 Pq~gERIlDmcAAPGGKTt~IAalMkn~G~I~AnD~n~~r~~~l~~n~~rlGv~-ntiv~n~D~~ef~~~~~~~-~fDRV 316 (460)
T KOG1122|consen 239 PQPGERILDMCAAPGGKTTHIAALMKNTGVIFANDSNENRLKSLKANLHRLGVT-NTIVSNYDGREFPEKEFPG-SFDRV 316 (460)
T ss_pred CCCCCeecchhcCCCchHHHHHHHHcCCceEEecccchHHHHHHHHHHHHhCCC-ceEEEccCcccccccccCc-cccee
Confidence 45668999999999977776665 3347999999999999999998888754 345566666542 333 89999
Q ss_pred EeC----C--ccccc-----C---------hHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 179 FDY----T--FFCAI-----E---------PEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 179 ~~~----~--~~~~~-----~---------~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
+.- . +..-- . ...+.++|....+++++||+|+.++=+
T Consensus 317 LLDAPCSGtgvi~K~~~vkt~k~~~di~~~~~LQr~LllsAi~lv~~GGvLVYSTCS 373 (460)
T KOG1122|consen 317 LLDAPCSGTGVISKDQSVKTNKTVKDILRYAHLQRELLLSAIDLVKAGGVLVYSTCS 373 (460)
T ss_pred eecCCCCCCcccccccccccchhHHHHHHhHHHHHHHHHHHHhhccCCcEEEEEeee
Confidence 843 2 11110 0 023468888999999999999876643
No 286
>KOG0822 consensus Protein kinase inhibitor [Cell cycle control, cell division, chromosome partitioning]
Probab=96.70 E-value=0.0048 Score=53.85 Aligned_cols=104 Identities=22% Similarity=0.221 Sum_probs=73.9
Q ss_pred CcEEEecCCCchHHHHhcC------CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC-CceeEEEeCC
Q 026903 110 GRALVPGCGTGYDVVAMAS------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT-ELFDLIFDYT 182 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~-~~fD~i~~~~ 182 (231)
..|+-+|+|-|=+.....+ +..+++++|-+|.++...+. .....+..+++++..|+..+.++ ++.|++++-.
T Consensus 369 tVimvlGaGRGPLv~~~lkaa~~~~RkVklyavEKNPNAivtL~~-~n~~~W~~~Vtii~~DMR~w~ap~eq~DI~VSEL 447 (649)
T KOG0822|consen 369 TVIMVLGAGRGPLVDASLKAAEETDRKVKLYAVEKNPNAIVTLQN-RNFECWDNRVTIISSDMRKWNAPREQADIIVSEL 447 (649)
T ss_pred EEEEEecCCCccHHHHHHHHHHHhcCceEEEEEecCcchhhhhhh-hchhhhcCeeEEEeccccccCCchhhccchHHHh
Confidence 4789999999966544433 44589999999999887765 33334567899999999997764 8999998743
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.-..-+.+.-++-|.-+...|||+|+-+=..|
T Consensus 448 LGSFGDNELSPECLDG~q~fLkpdgIsIP~sY 479 (649)
T KOG0822|consen 448 LGSFGDNELSPECLDGAQKFLKPDGISIPSSY 479 (649)
T ss_pred hccccCccCCHHHHHHHHhhcCCCceEccchh
Confidence 22211222334457888899999997664443
No 287
>COG1565 Uncharacterized conserved protein [Function unknown]
Probab=96.67 E-value=0.013 Score=49.13 Aligned_cols=85 Identities=14% Similarity=0.081 Sum_probs=58.9
Q ss_pred HHHHcCCCC-CCcEEEecCCCchHHHHhcC----------CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903 100 HLHQSGALP-KGRALVPGCGTGYDVVAMAS----------PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (231)
Q Consensus 100 ~~~~~~~~~-~~~vLDiGcG~G~~~~~l~~----------~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 168 (231)
..+.+...| +-.++|+|.|.|.++..+++ ...++..||+|++....-+++++... -.+....+.+
T Consensus 68 ~~wq~~g~p~~~~lvEiGaG~G~l~~DiL~~l~~L~P~~~~~~~~~iiE~s~~L~~~Qk~~L~~~~----~~~~~~~~~e 143 (370)
T COG1565 68 QLWQELGRPAPLKLVEIGAGRGTLASDILRTLRRLYPELYEALSYYIIEPSPELRARQKETLKATE----DLIRWVEWVE 143 (370)
T ss_pred HHHHHhcCCCCceEEEeCCCcChHHHHHHHHHHHhCHHHHhcceEEEEecCHHHHHHHHHHHhccc----cchhHHHHHH
Confidence 333344444 46899999999999988876 24589999999999999998886643 1223333444
Q ss_pred CCCCCceeEEEeCCcccccC
Q 026903 169 WCPTELFDLIFDYTFFCAIE 188 (231)
Q Consensus 169 ~~~~~~fD~i~~~~~~~~~~ 188 (231)
..|..-.-+|+++-.+..+|
T Consensus 144 ~~p~~~~~i~~~NElfDAlP 163 (370)
T COG1565 144 DLPKKFPGIVVSNELFDALP 163 (370)
T ss_pred hccccCceEEEechhhcccc
Confidence 44444466777777777775
No 288
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=96.65 E-value=0.0049 Score=52.21 Aligned_cols=99 Identities=18% Similarity=0.186 Sum_probs=68.2
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-CC----CCCCCCceeEEE
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-FF----TWCPTELFDLIF 179 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~----~~~~~~~fD~i~ 179 (231)
++.+|+-+|||. |..+..+++ .|. +|+.+|.++.-++.|++..... .+.....+ .. +......+|+++
T Consensus 168 ~~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~~~~Rl~~A~~~~g~~----~~~~~~~~~~~~~~~~~t~g~g~D~vi 243 (350)
T COG1063 168 PGGTVVVVGAGPIGLLAIALAKLLGASVVIVVDRSPERLELAKEAGGAD----VVVNPSEDDAGAEILELTGGRGADVVI 243 (350)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHhCCCe----EeecCccccHHHHHHHHhCCCCCCEEE
Confidence 335899999998 888877777 554 8999999999999999855321 11111111 11 111123699999
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
-... . ...+..+.++++|||.+.+.......
T Consensus 244 e~~G--~------~~~~~~ai~~~r~gG~v~~vGv~~~~ 274 (350)
T COG1063 244 EAVG--S------PPALDQALEALRPGGTVVVVGVYGGE 274 (350)
T ss_pred ECCC--C------HHHHHHHHHHhcCCCEEEEEeccCCc
Confidence 5444 1 23688899999999999988877644
No 289
>KOG1253 consensus tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=96.47 E-value=0.0018 Score=56.03 Aligned_cols=100 Identities=17% Similarity=0.148 Sum_probs=78.2
Q ss_pred CCCCcEEEecCCCchHHHHhcC--CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-----CCCCCceeEE
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~--~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~fD~i 178 (231)
.++.+|||.-|++|.-++..++ .|. .|++-|.++.+++..+++...++..+.++....|+.. ......||+|
T Consensus 108 ~~~l~vLealsAtGlrslRya~El~~v~~v~AnD~~~~aV~~i~~Nv~~N~v~~ive~~~~DA~~lM~~~~~~~~~FDvI 187 (525)
T KOG1253|consen 108 EKSLRVLEALSATGLRSLRYAKELPGVRQVVANDLNENAVTSIQRNVELNGVEDIVEPHHSDANVLMYEHPMVAKFFDVI 187 (525)
T ss_pred cCcchHHHHhhhhhHHHHHHHHHhcchhhhcccCCCHHHHHHHHhhhhhcCchhhcccccchHHHHHHhccccccccceE
Confidence 3457999999999998888887 444 8999999999999999999888766667777777666 2234689998
Q ss_pred EeCCcccccCh-HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 179 FDYTFFCAIEP-EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 179 ~~~~~~~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
= ++| -....||+...+.++.||.|++..
T Consensus 188 D-------LDPyGs~s~FLDsAvqav~~gGLL~vT~ 216 (525)
T KOG1253|consen 188 D-------LDPYGSPSPFLDSAVQAVRDGGLLCVTC 216 (525)
T ss_pred e-------cCCCCCccHHHHHHHHHhhcCCEEEEEe
Confidence 6 332 122468999999999999998865
No 290
>PF07757 AdoMet_MTase: Predicted AdoMet-dependent methyltransferase; InterPro: IPR011671 tRNA (uracil-O(2)-)-methyltransferase catalyses the formation of O(2)-methyl-uracil at position 44 (m2U44) in tRNA(Ser) [].; GO: 0008168 methyltransferase activity
Probab=96.46 E-value=0.0017 Score=44.55 Aligned_cols=33 Identities=21% Similarity=0.197 Sum_probs=29.6
Q ss_pred CCcEEEecCCCchHHHHhcCCCCeEEEEeCChH
Q 026903 109 KGRALVPGCGTGYDVVAMASPERYVVGLEISDI 141 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~ 141 (231)
.....|+|||.|.+...|.+.|+.-+|+|.-..
T Consensus 59 ~~~FVDlGCGNGLLV~IL~~EGy~G~GiD~R~R 91 (112)
T PF07757_consen 59 FQGFVDLGCGNGLLVYILNSEGYPGWGIDARRR 91 (112)
T ss_pred CCceEEccCCchHHHHHHHhCCCCccccccccc
Confidence 469999999999999999999999999998543
No 291
>PF03141 Methyltransf_29: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR004159 Members of this family of hypothetical plant proteins are putative methyltransferases. ; GO: 0008168 methyltransferase activity
Probab=96.44 E-value=0.0051 Score=53.49 Aligned_cols=95 Identities=14% Similarity=0.089 Sum_probs=63.7
Q ss_pred CcEEEecCCCchHHHHhcCCCC---eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCCcc
Q 026903 110 GRALVPGCGTGYDVVAMASPER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYTFF 184 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~---~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~~~ 184 (231)
..|+|..+|.|.++..|..... +|+-++ .+..+...-+ .++ | -.-.|+-+.+ .+.+||+|.+..+|
T Consensus 367 RNVMDMnAg~GGFAAAL~~~~VWVMNVVP~~-~~ntL~vIyd----RGL---I-G~yhDWCE~fsTYPRTYDLlHA~~lf 437 (506)
T PF03141_consen 367 RNVMDMNAGYGGFAAALIDDPVWVMNVVPVS-GPNTLPVIYD----RGL---I-GVYHDWCEAFSTYPRTYDLLHADGLF 437 (506)
T ss_pred eeeeeecccccHHHHHhccCCceEEEecccC-CCCcchhhhh----ccc---c-hhccchhhccCCCCcchhheehhhhh
Confidence 5999999999999999988543 333331 2222222221 111 1 1234555533 34689999999888
Q ss_pred cccCh-HHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 185 CAIEP-EMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~-~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
..... -....++-++-|.|+|+|.+++-+
T Consensus 438 s~~~~rC~~~~illEmDRILRP~G~~iiRD 467 (506)
T PF03141_consen 438 SLYKDRCEMEDILLEMDRILRPGGWVIIRD 467 (506)
T ss_pred hhhcccccHHHHHHHhHhhcCCCceEEEec
Confidence 77533 456788999999999999998854
No 292
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=96.36 E-value=0.023 Score=47.80 Aligned_cols=97 Identities=19% Similarity=0.253 Sum_probs=61.6
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCC
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYT 182 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~ 182 (231)
.++.+||-.|||. |..+..+++ .|. +|+++|.+++.++.+++.-...- +.....++.+.. ..+.+|+|+...
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~~~~~~~~~~a~~lGa~~v----i~~~~~~~~~~~~~~g~~D~vid~~ 243 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCADVSPRSLSLAREMGADKL----VNPQNDDLDHYKAEKGYFDVSFEVS 243 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHcCCcEE----ecCCcccHHHHhccCCCCCEEEECC
Confidence 4567899999875 667777776 676 69999999999998877421110 111111121211 123589998542
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
.- ...+....++|++||.++.....
T Consensus 244 G~--------~~~~~~~~~~l~~~G~iv~~G~~ 268 (343)
T PRK09880 244 GH--------PSSINTCLEVTRAKGVMVQVGMG 268 (343)
T ss_pred CC--------HHHHHHHHHHhhcCCEEEEEccC
Confidence 21 13467788899999999887654
No 293
>cd00315 Cyt_C5_DNA_methylase Cytosine-C5 specific DNA methylases; Methyl transfer reactions play an important role in many aspects of biology. Cytosine-specific DNA methylases are found both in prokaryotes and eukaryotes. DNA methylation, or the covalent addition of a methyl group to cytosine within the context of the CpG dinucleotide, has profound effects on the mammalian genome. These effects include transcriptional repression via inhibition of transcription factor binding or the recruitment of methyl-binding proteins and their associated chromatin remodeling factors, X chromosome inactivation, imprinting and the suppression of parasitic DNA sequences. DNA methylation is also essential for proper embryonic development and is an important player in both DNA repair and genome stability.
Probab=96.31 E-value=0.013 Score=47.94 Aligned_cols=65 Identities=17% Similarity=0.053 Sum_probs=51.5
Q ss_pred cEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC---CCceeEEEeCC
Q 026903 111 RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP---TELFDLIFDYT 182 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---~~~fD~i~~~~ 182 (231)
+++|+.||.|.....+...|. .+.++|+++.+++..+.+.... ++.+|+.+... ...+|+++...
T Consensus 2 ~v~dLFsG~Gg~~~gl~~~G~~~v~a~e~~~~a~~~~~~N~~~~-------~~~~Di~~~~~~~~~~~~D~l~~gp 70 (275)
T cd00315 2 RVIDLFAGIGGFRLGLEKAGFEIVAANEIDKSAAETYEANFPNK-------LIEGDITKIDEKDFIPDIDLLTGGF 70 (275)
T ss_pred cEEEEccCcchHHHHHHHcCCEEEEEEeCCHHHHHHHHHhCCCC-------CccCccccCchhhcCCCCCEEEeCC
Confidence 799999999999999988887 5788999999999998887421 55677777432 24699999764
No 294
>PF02636 Methyltransf_28: Putative S-adenosyl-L-methionine-dependent methyltransferase; InterPro: IPR003788 This entry describes proteins of unknown function.; PDB: 4F3N_A 1ZKD_B.
Probab=96.20 E-value=0.033 Score=44.93 Aligned_cols=43 Identities=21% Similarity=0.090 Sum_probs=34.8
Q ss_pred CcEEEecCCCchHHHHhcC----------CCCeEEEEeCChHHHHHHHHHhcc
Q 026903 110 GRALVPGCGTGYDVVAMAS----------PERYVVGLEISDIAIKKAEELSSS 152 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~----------~~~~v~~iD~s~~~i~~a~~~~~~ 152 (231)
.+|+|+|+|+|.++..+++ ...+++.+|+|+.+.+..++++..
T Consensus 20 ~~ivE~GaG~G~La~diL~~l~~~~p~~~~~~~y~ivE~Sp~L~~~Q~~~L~~ 72 (252)
T PF02636_consen 20 LRIVEIGAGRGTLARDILRYLRKFSPEVYKRLRYHIVEISPYLRERQKERLSE 72 (252)
T ss_dssp EEEEEES-TTSHHHHHHHHHHCCTTHHHHTTCEEEEE-TTCCCHHHHHHHCCC
T ss_pred cEEEEECCCchHHHHHHHHHHHHhChhhhhcceEEEEcCCHHHHHHHHHHhhh
Confidence 6999999999999988875 124899999999999988888765
No 295
>COG4301 Uncharacterized conserved protein [Function unknown]
Probab=96.20 E-value=0.071 Score=42.43 Aligned_cols=102 Identities=14% Similarity=0.175 Sum_probs=72.4
Q ss_pred CCcEEEecCCCchHHHHhcC----CCC--eEEEEeCChHHHHHHH-HHhccCCCCCceEEEEccCCCC---CCCC-ceeE
Q 026903 109 KGRALVPGCGTGYDVVAMAS----PER--YVVGLEISDIAIKKAE-ELSSSLPNAKFVSFLKADFFTW---CPTE-LFDL 177 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~----~~~--~v~~iD~s~~~i~~a~-~~~~~~~~~~~i~~~~~d~~~~---~~~~-~fD~ 177 (231)
+...+|+|+|+..-+..|.. .|. +++.+|++...+.... .....++. -.+.-+.+|.... .+.. .==.
T Consensus 79 ~~~lveLGsGns~Ktr~Llda~~~~~~~~ryvpiDv~a~iL~~ta~ai~~~y~~-l~v~~l~~~~~~~La~~~~~~~Rl~ 157 (321)
T COG4301 79 ACTLVELGSGNSTKTRILLDALAHRGSLLRYVPIDVSASILRATATAILREYPG-LEVNALCGDYELALAELPRGGRRLF 157 (321)
T ss_pred cceEEEecCCccHHHHHHHHHhhhcCCcceeeeecccHHHHHHHHHHHHHhCCC-CeEeehhhhHHHHHhcccCCCeEEE
Confidence 47999999999877766654 443 8999999999887644 34444431 1255566776662 2222 2223
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
++....+.+++|+....++..+...|.||-++++
T Consensus 158 ~flGStlGN~tp~e~~~Fl~~l~~a~~pGd~~Ll 191 (321)
T COG4301 158 VFLGSTLGNLTPGECAVFLTQLRGALRPGDYFLL 191 (321)
T ss_pred EEecccccCCChHHHHHHHHHHHhcCCCcceEEE
Confidence 4445678899999999999999999999998776
No 296
>COG3510 CmcI Cephalosporin hydroxylase [Defense mechanisms]
Probab=96.09 E-value=0.074 Score=40.67 Aligned_cols=106 Identities=14% Similarity=0.059 Sum_probs=73.6
Q ss_pred CCCCCcEEEecCCCchHHHHhcC----CC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--------
Q 026903 106 ALPKGRALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-------- 171 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~----~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-------- 171 (231)
.+.+..|+|+|.--|.-++.+|. .| .+|+++|++-...+-+... .++|.|+.++-.++..
T Consensus 67 ~~~P~lvIE~Gs~~GGSal~fA~~m~s~Gq~~kvl~vdIdi~~~~p~a~e------~p~i~f~egss~dpai~eqi~~~~ 140 (237)
T COG3510 67 ELQPSLVIEFGSRHGGSALFFANMMISIGQPFKVLGVDIDIKPLDPAARE------VPDILFIEGSSTDPAIAEQIRRLK 140 (237)
T ss_pred hcCCceeEeeccccCchhhhhhHhHHhcCCCceEEEEecccCcCChhhhc------CCCeEEEeCCCCCHHHHHHHHHHh
Confidence 45668999999999988877775 45 6999999987765443322 2579999999888431
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219 (231)
Q Consensus 172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 219 (231)
.+.--+.+|...-|+. +..-+.|+.+..+|..|-++++.+-.-++.
T Consensus 141 ~~y~kIfvilDsdHs~--~hvLAel~~~~pllsaG~Y~vVeDs~v~dl 186 (237)
T COG3510 141 NEYPKIFVILDSDHSM--EHVLAELKLLAPLLSAGDYLVVEDSNVNDL 186 (237)
T ss_pred cCCCcEEEEecCCchH--HHHHHHHHHhhhHhhcCceEEEecccccCC
Confidence 2222444454555554 444567888899999999998876544443
No 297
>PF06859 Bin3: Bicoid-interacting protein 3 (Bin3); InterPro: IPR010675 This entry represents a conserved region of approximately 120 residues within eukaryotic Bicoid-interacting protein 3 (Bin3). Bin3, which shows similarity to a number of protein methyltransferases that modify RNA-binding proteins, interacts with Bicoid, which itself directs pattern formation in the early Drosophila embryo. The interaction might allow Bicoid to switch between its dual roles in transcription and translation []. Note that proteins of the entry contain a conserved HLN motif.; GO: 0008168 methyltransferase activity; PDB: 3G07_B.
Probab=96.09 E-value=0.0041 Score=43.02 Aligned_cols=39 Identities=23% Similarity=0.348 Sum_probs=30.1
Q ss_pred ceeEEEeCCcc--ccc--ChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 174 LFDLIFDYTFF--CAI--EPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 174 ~fD~i~~~~~~--~~~--~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
.||+|+|..+. .|+ .++-...+++++.+.|+|||.|++.
T Consensus 1 ~yDvilclSVtkWIHLn~GD~Gl~~~f~~~~~~L~pGG~lilE 43 (110)
T PF06859_consen 1 QYDVILCLSVTKWIHLNWGDEGLKRFFRRIYSLLRPGGILILE 43 (110)
T ss_dssp -EEEEEEES-HHHHHHHHHHHHHHHHHHHHHHHEEEEEEEEEE
T ss_pred CccEEEEEEeeEEEEecCcCHHHHHHHHHHHHhhCCCCEEEEe
Confidence 49999998874 344 2466788999999999999999774
No 298
>PF11312 DUF3115: Protein of unknown function (DUF3115); InterPro: IPR021463 This eukaryotic family of proteins has no known function.
Probab=96.04 E-value=0.016 Score=47.70 Aligned_cols=110 Identities=22% Similarity=0.265 Sum_probs=73.1
Q ss_pred CcEEEecCCCchHHHHhcC--------------CC--------CeEEEEeCChHH--HHHHHHHhccC------------
Q 026903 110 GRALVPGCGTGYDVVAMAS--------------PE--------RYVVGLEISDIA--IKKAEELSSSL------------ 153 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--------------~~--------~~v~~iD~s~~~--i~~a~~~~~~~------------ 153 (231)
.+||.||.|.|.-...++. .+ .+++.+|+.+.. ++.....+...
T Consensus 88 ~~VlCIGGGAGAElVAlAa~~~~~~~~~~s~~~~~~~~~~~~~l~itlvDiAdWs~VV~~L~~~i~s~p~~sk~a~~~~~ 167 (315)
T PF11312_consen 88 LRVLCIGGGAGAELVALAAAFRTRSSEFLSKSPSGVSLSSPPSLSITLVDIADWSSVVDRLTTTITSPPPLSKYASAANW 167 (315)
T ss_pred ceEEEECCChHHHHHHHHHHHhhcccccCCcccccccccCCCcceEEEEEecChHHHHHHHHHhccCCCCcccccccccc
Confidence 6999999999877666543 01 389999998763 44444433322
Q ss_pred ----CCCCceEEEEccCCCCCCCC--------ceeEEEeCCccccc---ChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 154 ----PNAKFVSFLKADFFTWCPTE--------LFDLIFDYTFFCAI---EPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 154 ----~~~~~i~~~~~d~~~~~~~~--------~fD~i~~~~~~~~~---~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
...-++.|.+.|+.....++ ..++|...++++-+ ....-.++|.++...++||..|+|++-+.++
T Consensus 168 ~~~~~~~~~~~F~~~DvL~~~~~~l~~ll~~~~~~LITLlFTlNELfs~s~~kTt~FLl~Lt~~~~~GslLLVvDSpGSY 247 (315)
T PF11312_consen 168 PLIEPDRFNVSFTQQDVLSLSEDDLKSLLGPPSPDLITLLFTLNELFSTSISKTTKFLLRLTDICPPGSLLLVVDSPGSY 247 (315)
T ss_pred ccCCccceeeeEEecccccCChHHHHHHhccchhHHHHHHHHHHHHHhcChHHHHHHHHHHHhhcCCCcEEEEEcCCCCc
Confidence 01125789999998854321 35666554444322 1234478999999999999999999977764
Q ss_pred C
Q 026903 219 H 219 (231)
Q Consensus 219 ~ 219 (231)
.
T Consensus 248 S 248 (315)
T PF11312_consen 248 S 248 (315)
T ss_pred h
Confidence 3
No 299
>KOG1596 consensus Fibrillarin and related nucleolar RNA-binding proteins [RNA processing and modification]
Probab=96.02 E-value=0.03 Score=44.27 Aligned_cols=107 Identities=21% Similarity=0.218 Sum_probs=70.3
Q ss_pred CCCCcEEEecCCCchHHHHhcC---CCCeEEEEeCChHH----HHHHHHHhccCCCCCceEEEEccCCCCCC----CCce
Q 026903 107 LPKGRALVPGCGTGYDVVAMAS---PERYVVGLEISDIA----IKKAEELSSSLPNAKFVSFLKADFFTWCP----TELF 175 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~----i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~f 175 (231)
.|+.+||=+|+++|...-.+.. +..-|+++|.|+.. +..|+++ .||-.+.-|+..+.. -.-.
T Consensus 155 kpGsKVLYLGAasGttVSHvSDiVGpeG~VYAVEfs~rsGRdL~nmAkkR-------tNiiPIiEDArhP~KYRmlVgmV 227 (317)
T KOG1596|consen 155 KPGSKVLYLGAASGTTVSHVSDIVGPEGCVYAVEFSHRSGRDLINMAKKR-------TNIIPIIEDARHPAKYRMLVGMV 227 (317)
T ss_pred cCCceEEEeeccCCceeehhhcccCCCceEEEEEecccchHHHHHHhhcc-------CCceeeeccCCCchheeeeeeeE
Confidence 4568999999999988877766 44579999999864 3333332 367777777777431 1257
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCC
Q 026903 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPP 224 (231)
Q Consensus 176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~ 224 (231)
|+||+.-. .|++...+.-+....||+||.+++.-...--+++-++
T Consensus 228 DvIFaDva----qpdq~RivaLNA~~FLk~gGhfvisikancidstv~a 272 (317)
T KOG1596|consen 228 DVIFADVA----QPDQARIVALNAQYFLKNGGHFVISIKANCIDSTVFA 272 (317)
T ss_pred EEEeccCC----CchhhhhhhhhhhhhhccCCeEEEEEecccccccccH
Confidence 77774221 1233334445667889999999887766655544443
No 300
>KOG0024 consensus Sorbitol dehydrogenase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=95.90 E-value=0.023 Score=46.93 Aligned_cols=99 Identities=13% Similarity=0.039 Sum_probs=67.2
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC-----CC----CCCCCc
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF-----FT----WCPTEL 174 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~-----~~----~~~~~~ 174 (231)
.++.+||-+|+|. |..+...|+ .|+ +|+.+|+++..++.|++ +... .+....... .+ ..-...
T Consensus 168 k~Gs~vLV~GAGPIGl~t~l~Aka~GA~~VVi~d~~~~Rle~Ak~-~Ga~----~~~~~~~~~~~~~~~~~v~~~~g~~~ 242 (354)
T KOG0024|consen 168 KKGSKVLVLGAGPIGLLTGLVAKAMGASDVVITDLVANRLELAKK-FGAT----VTDPSSHKSSPQELAELVEKALGKKQ 242 (354)
T ss_pred ccCCeEEEECCcHHHHHHHHHHHHcCCCcEEEeecCHHHHHHHHH-hCCe----EEeeccccccHHHHHHHHHhhccccC
Confidence 3568999999998 777777777 665 99999999999999999 4321 122222111 11 111235
Q ss_pred eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
+|+.|.....+ .-++.....++.||.+++..+..+.
T Consensus 243 ~d~~~dCsG~~--------~~~~aai~a~r~gGt~vlvg~g~~~ 278 (354)
T KOG0024|consen 243 PDVTFDCSGAE--------VTIRAAIKATRSGGTVVLVGMGAEE 278 (354)
T ss_pred CCeEEEccCch--------HHHHHHHHHhccCCEEEEeccCCCc
Confidence 88888655443 2356678899999998888876643
No 301
>PF05711 TylF: Macrocin-O-methyltransferase (TylF); InterPro: IPR008884 This family consists of bacterial macrocin O-methyltransferase (TylF) proteins. TylF is responsible for the methylation of macrocin to produce tylosin. Tylosin is a macrolide antibiotic used in veterinary medicine to treat infections caused by Gram-positive bacteria and as an animal growth promoter in the Sus scrofa (Pig) industry. It is produced by several Streptomyces species. As with other macrolides, the antibiotic activity of tylosin is due to the inhibition of protein biosynthesis by a mechanism that involves the binding of tylosin to the ribosome, preventing the formation of the mRNA-aminoacyl-tRNA-ribosome complex [].; PDB: 3TOS_D 2WK1_A.
Probab=95.83 E-value=0.037 Score=44.39 Aligned_cols=104 Identities=17% Similarity=0.172 Sum_probs=62.3
Q ss_pred CCcEEEecCCCchHHHHhcC-------CCCeEEEEeCCh--------------------------HHHHHHHHHhccCCC
Q 026903 109 KGRALVPGCGTGYDVVAMAS-------PERYVVGLEISD--------------------------IAIKKAEELSSSLPN 155 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~-------~~~~v~~iD~s~--------------------------~~i~~a~~~~~~~~~ 155 (231)
++.|+|.||-.|..+..++. .+.+++++|.-+ ...+..++++...++
T Consensus 75 pGdivE~GV~rGgs~~~~~~~l~~~~~~~R~i~lfDSFeG~P~~~~~d~~~d~~~~~~~~~~~~~~s~e~V~~n~~~~gl 154 (248)
T PF05711_consen 75 PGDIVECGVWRGGSSILMRAVLEAYGNPDRRIYLFDSFEGFPEPDEEDYPADKGWEFHEYNGYLAVSLEEVRENFARYGL 154 (248)
T ss_dssp -SEEEEE--TTSHHHHHHHHHHHCTTTTS--EEEEE-SSSSSS--CCCTCCCCHCTCCGCCHHCTHHHHHHHHCCCCTTT
T ss_pred CeEEEEEeeCCCHHHHHHHHHHHHhCCCCCEEEEEeCCCCCCCCccccccccchhhhhhcccccccCHHHHHHHHHHcCC
Confidence 48999999999987765432 234788877422 134445556655543
Q ss_pred -CCceEEEEccCCCCCCCCceeEEEeCCcccccCh---HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 156 -AKFVSFLKADFFTWCPTELFDLIFDYTFFCAIEP---EMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 156 -~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~~---~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
.+++.++.|.+.+..+..+.+-| ++-|++- +.-...|..+...|.|||++++-+|..
T Consensus 155 ~~~~v~~vkG~F~dTLp~~p~~~I----All~lD~DlYesT~~aLe~lyprl~~GGiIi~DDY~~ 215 (248)
T PF05711_consen 155 LDDNVRFVKGWFPDTLPDAPIERI----ALLHLDCDLYESTKDALEFLYPRLSPGGIIIFDDYGH 215 (248)
T ss_dssp SSTTEEEEES-HHHHCCC-TT--E----EEEEE---SHHHHHHHHHHHGGGEEEEEEEEESSTTT
T ss_pred CcccEEEECCcchhhhccCCCccE----EEEEEeccchHHHHHHHHHHHhhcCCCeEEEEeCCCC
Confidence 45899999999885443222211 2333432 344678899999999999999988764
No 302
>KOG2920 consensus Predicted methyltransferase [General function prediction only]
Probab=95.83 E-value=0.0026 Score=51.40 Aligned_cols=107 Identities=18% Similarity=0.126 Sum_probs=64.5
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCC-CeEEEEeCChHHHHHHH-HHhcc--------CCCCCceEEEEc---cCCCCCCC
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPE-RYVVGLEISDIAIKKAE-ELSSS--------LPNAKFVSFLKA---DFFTWCPT 172 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~-~~v~~iD~s~~~i~~a~-~~~~~--------~~~~~~i~~~~~---d~~~~~~~ 172 (231)
...+++|||+|||+|...+.....+ ..+...|++.+.++.-. .+... .....-..+..- |+.-....
T Consensus 114 ~~~~k~vLELgCg~~Lp~i~~~~~~~~~~~fqD~na~vl~~~t~pn~~~~~~~~~~~~e~~~~~~i~~s~l~dg~~~~t~ 193 (282)
T KOG2920|consen 114 SFSGKRVLELGCGAALPGIFAFVKGAVSVHFQDFNAEVLRLVTLPNILVNSHAGVEEKENHKVDEILNSLLSDGVFNHTE 193 (282)
T ss_pred EecCceeEecCCcccccchhhhhhccceeeeEecchhheeeecccceecchhhhhhhhhcccceeccccccccchhhhcc
Confidence 4567899999999999988888777 58999999998873211 00000 000000112222 22111111
Q ss_pred -CceeEEEeCCcccccChHHHHHH-HHHHHhhcCCCcEEEEEEc
Q 026903 173 -ELFDLIFDYTFFCAIEPEMRAAW-AQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 173 -~~fD~i~~~~~~~~~~~~~~~~~-l~~~~~~L~pgG~l~~~~~ 214 (231)
..||+|.+.-.++..+. ...+ +.....+++++|++++..-
T Consensus 194 ~~~ydlIlsSetiy~~~~--~~~~~~~~r~~l~~~D~~~~~aAK 235 (282)
T KOG2920|consen 194 RTHYDLILSSETIYSIDS--LAVLYLLHRPCLLKTDGVFYVAAK 235 (282)
T ss_pred ccchhhhhhhhhhhCcch--hhhhHhhhhhhcCCccchhhhhhH
Confidence 27899988777665533 2233 5667778899998877553
No 303
>COG1867 TRM1 N2,N2-dimethylguanosine tRNA methyltransferase [Translation, ribosomal structure and biogenesis]
Probab=95.82 E-value=0.03 Score=46.99 Aligned_cols=98 Identities=19% Similarity=0.077 Sum_probs=71.7
Q ss_pred CCcEEEecCCCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCCcc
Q 026903 109 KGRALVPGCGTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFF 184 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~i~~~~~~ 184 (231)
..+|+|.-+|+|.=++..+. .+. +++.-|+||.+++.+++|+..+.. .+...++.|....... ..||+|=. ..|
T Consensus 53 ~~~v~DalsatGiRgIRya~E~~~~~v~lNDisp~Avelik~Nv~~N~~-~~~~v~n~DAN~lm~~~~~~fd~IDi-DPF 130 (380)
T COG1867 53 PKRVLDALSATGIRGIRYAVETGVVKVVLNDISPKAVELIKENVRLNSG-EDAEVINKDANALLHELHRAFDVIDI-DPF 130 (380)
T ss_pred CeEEeecccccchhHhhhhhhcCccEEEEccCCHHHHHHHHHHHHhcCc-ccceeecchHHHHHHhcCCCccEEec-CCC
Confidence 57999999999977777765 444 899999999999999999987732 2355666666664333 67888842 222
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
. ....+++...+.++.||+|.+..
T Consensus 131 G-----SPaPFlDaA~~s~~~~G~l~vTA 154 (380)
T COG1867 131 G-----SPAPFLDAALRSVRRGGLLCVTA 154 (380)
T ss_pred C-----CCchHHHHHHHHhhcCCEEEEEe
Confidence 1 11357888889999999987754
No 304
>cd08283 FDH_like_1 Glutathione-dependent formaldehyde dehydrogenase related proteins, child 1. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. T
Probab=95.81 E-value=0.026 Score=48.35 Aligned_cols=103 Identities=15% Similarity=0.125 Sum_probs=65.8
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-CCC----CCCCCceeEEE
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-FFT----WCPTELFDLIF 179 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-~~~----~~~~~~fD~i~ 179 (231)
++.+||..|||. |..+..+++ .|. +++++|.+++..+.+++.... ..+.....+ +.. ......+|+|+
T Consensus 184 ~g~~VlV~g~G~vG~~~~~la~~~g~~~vi~~~~~~~~~~~~~~~~~~----~vi~~~~~~~~~~~l~~~~~~~~~D~vl 259 (386)
T cd08283 184 PGDTVAVWGCGPVGLFAARSAKLLGAERVIAIDRVPERLEMARSHLGA----ETINFEEVDDVVEALRELTGGRGPDVCI 259 (386)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcCCc----EEEcCCcchHHHHHHHHHcCCCCCCEEE
Confidence 457999999988 888888887 665 699999999999988875311 111111111 111 22234699998
Q ss_pred eCCccc-------cc------ChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 180 DYTFFC-------AI------EPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 180 ~~~~~~-------~~------~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
....-. ++ +..+....+..+.++|+++|.++....
T Consensus 260 d~vg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~G~iv~~g~ 307 (386)
T cd08283 260 DAVGMEAHGSPLHKAEQALLKLETDRPDALREAIQAVRKGGTVSIIGV 307 (386)
T ss_pred ECCCCcccccccccccccccccccCchHHHHHHHHHhccCCEEEEEcC
Confidence 743111 11 111224567888999999999987653
No 305
>PF00107 ADH_zinc_N: Zinc-binding dehydrogenase; InterPro: IPR013149 Alcohol dehydrogenase (1.1.1.1 from EC) (ADH) catalyzes the reversible oxidation of alcohols to their corresponding acetaldehyde or ketone with the concomitant reduction of NAD: alcohol + NAD = aldehyde or ketone + NADH Currently three structurally and catalytically different types of alcohol dehydrogenases are known: Zinc-containing 'long-chain' alcohol dehydrogenases. Insect-type, or 'short-chain' alcohol dehydrogenases. Iron-containing alcohol dehydrogenases. Zinc-containing ADH's [, ] are dimeric or tetrameric enzymes that bind two atoms of zinc per subunit. One of the zinc atom is essential for catalytic activity while the other is not. Both zinc atoms are coordinated by either cysteine or histidine residues; the catalytic zinc is coordinated by two cysteines and one histidine. Zinc-containing ADH's are found in bacteria, mammals, plants, and in fungi. In many species there is more than one isozyme (for example, humans have at least six isozymes, yeast have three, etc.). A number of other zinc-dependent dehydrogenases are closely related to zinc ADH [] and are included in this family. Sorbitol dehydrogenase (1.1.1.14 from EC) L-threonine 3-dehydrogenase (1.1.1.103 from EC) Glutathione-dependent formaldehyde dehydrogenase (1.1.1.284 from EC) Mannitol dehydrogenase (1.1.1.255 from EC) In addition, this family includes NADP-dependent quinone oxidoreductase (1.6.5.5 from EC), an enzyme found in bacteria (gene qor), in yeast and in mammals where, in some species such as rodents, it has been recruited as an eye lens protein and is known as zeta-crystallin []. The sequence of quinone oxidoreductase is distantly related to that other zinc-containing alcohol dehydrogenases and it lacks the zinc-ligand residues. The torpedo fish and mammalian synaptic vesicle membrane protein vat-1 is related to qor. This entry represents the cofactor-binding domain of these enzymes, which is normally found towards the C terminus. Structural studies indicate that it forms a classical Rossman fold that reversibly binds NAD(H) [, , ].; GO: 0008270 zinc ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3PI7_A 3COS_D 1VJ1_A 2ZB3_A 1PIW_B 1Q1N_A 1PS0_A 2EER_B 3KRT_A 1ZSY_A ....
Probab=95.75 E-value=0.0056 Score=43.74 Aligned_cols=84 Identities=17% Similarity=0.177 Sum_probs=59.9
Q ss_pred CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCceeEEEeCCcccccCh
Q 026903 118 GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFDLIFDYTFFCAIEP 189 (231)
Q Consensus 118 G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD~i~~~~~~~~~~~ 189 (231)
|.|..+..+++ .|.+|+++|.++.-.+.+++.... .++..+-.+ ......+|+|+....-
T Consensus 1 ~vG~~a~q~ak~~G~~vi~~~~~~~k~~~~~~~Ga~-------~~~~~~~~~~~~~i~~~~~~~~~d~vid~~g~----- 68 (130)
T PF00107_consen 1 GVGLMAIQLAKAMGAKVIATDRSEEKLELAKELGAD-------HVIDYSDDDFVEQIRELTGGRGVDVVIDCVGS----- 68 (130)
T ss_dssp HHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTTES-------EEEETTTSSHHHHHHHHTTTSSEEEEEESSSS-----
T ss_pred ChHHHHHHHHHHcCCEEEEEECCHHHHHHHHhhccc-------ccccccccccccccccccccccceEEEEecCc-----
Confidence 35778888887 789999999999999999875421 233332221 2333579999954331
Q ss_pred HHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 190 EMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 190 ~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
...++....+|+++|.++++....
T Consensus 69 ---~~~~~~~~~~l~~~G~~v~vg~~~ 92 (130)
T PF00107_consen 69 ---GDTLQEAIKLLRPGGRIVVVGVYG 92 (130)
T ss_dssp ---HHHHHHHHHHEEEEEEEEEESSTS
T ss_pred ---HHHHHHHHHHhccCCEEEEEEccC
Confidence 246788999999999999988766
No 306
>PF11899 DUF3419: Protein of unknown function (DUF3419); InterPro: IPR021829 This family of proteins are functionally uncharacterised. This protein is found in bacteria and eukaryotes. Proteins in this family are typically between 398 to 802 amino acids in length.
Probab=95.71 E-value=0.026 Score=48.21 Aligned_cols=60 Identities=13% Similarity=0.083 Sum_probs=53.9
Q ss_pred CceEEEEccCCCC---CCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 157 KFVSFLKADFFTW---CPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 157 ~~i~~~~~d~~~~---~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+++++..+++.+. .+++++|.++....+.+++++...+.++.+.+.++|||++++-....
T Consensus 275 drv~i~t~si~~~L~~~~~~s~~~~vL~D~~Dwm~~~~~~~~~~~l~~~~~pgaRV~~Rsa~~ 337 (380)
T PF11899_consen 275 DRVRIHTDSIEEVLRRLPPGSFDRFVLSDHMDWMDPEQLNEEWQELARTARPGARVLWRSAAV 337 (380)
T ss_pred CeEEEEeccHHHHHHhCCCCCeeEEEecchhhhCCHHHHHHHHHHHHHHhCCCCEEEEeeCCC
Confidence 6899999999993 35789999999999999999999999999999999999999876654
No 307
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=95.67 E-value=0.054 Score=45.80 Aligned_cols=97 Identities=27% Similarity=0.227 Sum_probs=60.6
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeC---ChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeC
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEI---SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY 181 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~---s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~ 181 (231)
.++.+||-+|+|. |..+..+++ .|.+|++++. +++-.+.+++.-.. .+.....+..+......+|+|+..
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~~~~~~~~~~~~~~~~Ga~-----~v~~~~~~~~~~~~~~~~d~vid~ 245 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLNRRDPPDPKADIVEELGAT-----YVNSSKTPVAEVKLVGEFDLIIEA 245 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHcCCE-----EecCCccchhhhhhcCCCCEEEEC
Confidence 3567999999875 777777776 7778999987 67777777653211 111111111110112468999854
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
..- ...+....+.|+++|.+++.....
T Consensus 246 ~g~--------~~~~~~~~~~l~~~G~~v~~G~~~ 272 (355)
T cd08230 246 TGV--------PPLAFEALPALAPNGVVILFGVPG 272 (355)
T ss_pred cCC--------HHHHHHHHHHccCCcEEEEEecCC
Confidence 321 125677889999999998776654
No 308
>PF03269 DUF268: Caenorhabditis protein of unknown function, DUF268; InterPro: IPR004951 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=95.61 E-value=0.0065 Score=44.94 Aligned_cols=95 Identities=23% Similarity=0.266 Sum_probs=54.7
Q ss_pred CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCce-EEEEccCCC-C-CCCCceeEEEeCCccc
Q 026903 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFT-W-CPTELFDLIFDYTFFC 185 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i-~~~~~d~~~-~-~~~~~fD~i~~~~~~~ 185 (231)
++++-+|...=-.=...+..|+ +++.+|.++--++.- . .+++ .+...|+.. + ...++||++.|..+++
T Consensus 3 ~~g~V~GS~~PwvEv~aL~~GA~~iltveyn~L~i~~~---~-----~dr~ssi~p~df~~~~~~y~~~fD~~as~~siE 74 (177)
T PF03269_consen 3 KSGLVVGSMQPWVEVMALQHGAAKILTVEYNKLEIQEE---F-----RDRLSSILPVDFAKNWQKYAGSFDFAASFSSIE 74 (177)
T ss_pred ceEEEEecCCchhhHHHHHcCCceEEEEeecccccCcc---c-----ccccccccHHHHHHHHHHhhccchhhheechhc
Confidence 5667777653222222223454 788998876322111 0 0111 222233332 1 2346899999999998
Q ss_pred cc---------ChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 186 AI---------EPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 186 ~~---------~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
|. ++.--.+.+.++..+|||||.|++.
T Consensus 75 h~GLGRYGDPidp~Gdl~~m~~i~~vLK~GG~L~l~ 110 (177)
T PF03269_consen 75 HFGLGRYGDPIDPIGDLRAMAKIKCVLKPGGLLFLG 110 (177)
T ss_pred cccccccCCCCCccccHHHHHHHHHhhccCCeEEEE
Confidence 84 2222356788999999999988764
No 309
>COG1568 Predicted methyltransferases [General function prediction only]
Probab=95.56 E-value=0.13 Score=41.62 Aligned_cols=105 Identities=18% Similarity=0.166 Sum_probs=73.1
Q ss_pred cCCCCCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC---CceeEE
Q 026903 104 SGALPKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT---ELFDLI 178 (231)
Q Consensus 104 ~~~~~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~---~~fD~i 178 (231)
...+.++.|+-+| -.-..+++++-.| .++..+|+++..+++..+.+++.+.. ++..+..|+.+++|+ ..||++
T Consensus 148 RGDL~gK~I~vvG-DDDLtsia~aLt~mpk~iaVvDIDERli~fi~k~aee~g~~-~ie~~~~Dlr~plpe~~~~kFDvf 225 (354)
T COG1568 148 RGDLEGKEIFVVG-DDDLTSIALALTGMPKRIAVVDIDERLIKFIEKVAEELGYN-NIEAFVFDLRNPLPEDLKRKFDVF 225 (354)
T ss_pred ccCcCCCeEEEEc-CchhhHHHHHhcCCCceEEEEechHHHHHHHHHHHHHhCcc-chhheeehhcccChHHHHhhCCee
Confidence 3466778899999 4555555555433 48999999999999999888777643 589999999998875 489999
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCC---cEEEEEE
Q 026903 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPD---GELITLM 213 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pg---G~l~~~~ 213 (231)
+.-..- -+ .....++.+=...||.- |++.+..
T Consensus 226 iTDPpe-Ti--~alk~FlgRGI~tLkg~~~aGyfgiT~ 260 (354)
T COG1568 226 ITDPPE-TI--KALKLFLGRGIATLKGEGCAGYFGITR 260 (354)
T ss_pred ecCchh-hH--HHHHHHHhccHHHhcCCCccceEeeee
Confidence 842211 11 23345555555667666 6665543
No 310
>KOG1099 consensus SAM-dependent methyltransferase/cell division protein FtsJ [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=95.47 E-value=0.037 Score=43.51 Aligned_cols=90 Identities=17% Similarity=0.176 Sum_probs=64.1
Q ss_pred CcEEEecCCCchHHHHhcC--------CCC---eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---------
Q 026903 110 GRALVPGCGTGYDVVAMAS--------PER---YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW--------- 169 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~--------~~~---~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~--------- 169 (231)
.+++|+.+..|.++..|.+ .+. .++++|+.+.+ .. +.+.-+++|+...
T Consensus 43 ~rvVDLCAAPGSWSQvlSrkL~~~~~~~~~~~~kIVaVDLQ~Ma---------PI---~GV~qlq~DIT~~stae~Ii~h 110 (294)
T KOG1099|consen 43 KRVVDLCAAPGSWSQVLSRKLYKPLPSSGERDKKIVAVDLQPMA---------PI---EGVIQLQGDITSASTAEAIIEH 110 (294)
T ss_pred hHHhhhhcCCCcHHHHHHHHHhccCCCcchhhccEEEEecccCC---------cc---CceEEeecccCCHhHHHHHHHH
Confidence 6999999999999988865 122 39999996532 11 2467788999882
Q ss_pred CCCCceeEEEeCCc-----ccccCh----HHHHHHHHHHHhhcCCCcEEEE
Q 026903 170 CPTELFDLIFDYTF-----FCAIEP----EMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 170 ~~~~~fD~i~~~~~-----~~~~~~----~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
+-.+..|+|+|-.+ +|.++. +.....|.-...+|||||.++.
T Consensus 111 fggekAdlVvcDGAPDvTGlHd~DEy~Q~qLllaAl~i~t~Vlk~Gg~FVa 161 (294)
T KOG1099|consen 111 FGGEKADLVVCDGAPDVTGLHDLDEYVQAQLLLAALNIATCVLKPGGSFVA 161 (294)
T ss_pred hCCCCccEEEeCCCCCccccccHHHHHHHHHHHHHHHHHhheecCCCeeeh
Confidence 23458999999754 444432 3345666777789999999874
No 311
>cd08254 hydroxyacyl_CoA_DH 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase, N-benzyl-3-pyrrolidinol dehydrogenase, and other MDR family members. This group contains enzymes of the zinc-dependent alcohol dehydrogenase family, including members (aka MDR) identified as 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase and N-benzyl-3-pyrrolidinol dehydrogenase. 6-hydroxycyclohex-1-ene-1-carboxyl-CoA dehydrogenase catalyzes the conversion of 6-Hydroxycyclohex-1-enecarbonyl-CoA and NAD+ to 6-Ketoxycyclohex-1-ene-1-carboxyl-CoA,NADH, and H+. This group displays the characteristic catalytic and structural zinc sites of the zinc-dependent alcohol dehydrogenases. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentatio
Probab=95.44 E-value=0.03 Score=46.64 Aligned_cols=92 Identities=23% Similarity=0.321 Sum_probs=60.8
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCceeEE
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFDLI 178 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD~i 178 (231)
++.+||..|+|. |..+..+++ .|.+|++++.+++..+.+++.-. +.+..+... ......+|++
T Consensus 165 ~~~~vli~g~g~vG~~~~~la~~~G~~V~~~~~s~~~~~~~~~~g~--------~~~~~~~~~~~~~~~~~~~~~~~D~v 236 (338)
T cd08254 165 PGETVLVIGLGGLGLNAVQIAKAMGAAVIAVDIKEEKLELAKELGA--------DEVLNSLDDSPKDKKAAGLGGGFDVI 236 (338)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhCC--------CEEEcCCCcCHHHHHHHhcCCCceEE
Confidence 456888888763 777777777 78899999999998888865321 111111111 1234579998
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
+..... ...++.+.+.|+++|.++.....
T Consensus 237 id~~g~--------~~~~~~~~~~l~~~G~~v~~g~~ 265 (338)
T cd08254 237 FDFVGT--------QPTFEDAQKAVKPGGRIVVVGLG 265 (338)
T ss_pred EECCCC--------HHHHHHHHHHhhcCCEEEEECCC
Confidence 853221 23567888999999999876554
No 312
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=95.43 E-value=0.2 Score=34.83 Aligned_cols=87 Identities=17% Similarity=0.059 Sum_probs=58.6
Q ss_pred CCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeCCccccc
Q 026903 117 CGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYTFFCAI 187 (231)
Q Consensus 117 cG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~~~~~~~~ 187 (231)
||.|..+..+++ .+..|+.+|.+++.++.+++.. +.++.+|..+.. .-..++.+++..
T Consensus 4 ~G~g~~~~~i~~~L~~~~~~vvvid~d~~~~~~~~~~~--------~~~i~gd~~~~~~l~~a~i~~a~~vv~~~----- 70 (116)
T PF02254_consen 4 IGYGRIGREIAEQLKEGGIDVVVIDRDPERVEELREEG--------VEVIYGDATDPEVLERAGIEKADAVVILT----- 70 (116)
T ss_dssp ES-SHHHHHHHHHHHHTTSEEEEEESSHHHHHHHHHTT--------SEEEES-TTSHHHHHHTTGGCESEEEEES-----
T ss_pred EcCCHHHHHHHHHHHhCCCEEEEEECCcHHHHHHHhcc--------cccccccchhhhHHhhcCccccCEEEEcc-----
Confidence 555667766665 4558999999999988887643 678999999821 224688777422
Q ss_pred ChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 188 EPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 188 ~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+.+.....+....+.+.|...+++....+
T Consensus 71 ~~d~~n~~~~~~~r~~~~~~~ii~~~~~~ 99 (116)
T PF02254_consen 71 DDDEENLLIALLARELNPDIRIIARVNDP 99 (116)
T ss_dssp SSHHHHHHHHHHHHHHTTTSEEEEEESSH
T ss_pred CCHHHHHHHHHHHHHHCCCCeEEEEECCH
Confidence 23444555666777788888887766544
No 313
>COG3315 O-Methyltransferase involved in polyketide biosynthesis [Secondary metabolites biosynthesis, transport, and catabolism]
Probab=95.29 E-value=0.28 Score=40.57 Aligned_cols=103 Identities=12% Similarity=0.150 Sum_probs=77.6
Q ss_pred CcEEEecCCCchHHHHhcCC-CCeEEEEeCChHHHHHHHHHhccCCC--CCceEEEEccCCC--C---CC-----CCcee
Q 026903 110 GRALVPGCGTGYDVVAMASP-ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFT--W---CP-----TELFD 176 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~-~~~v~~iD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~--~---~~-----~~~fD 176 (231)
..|+-+|||--.-...+-.+ +.+|+-+|. |+.++.=++.+.+.+. ..+.+++..|+.+ + .. ...--
T Consensus 94 ~qvViLgaGLDTRayRl~~~~~~~vfEvD~-Pevi~~K~~~l~e~~~~~~~~~~~Va~Dl~~~dw~~~L~~~G~d~~~pt 172 (297)
T COG3315 94 RQVVILGAGLDTRAYRLDWPKGTRVFEVDL-PEVIEFKKKLLAERGATPPAHRRLVAVDLREDDWPQALAAAGFDRSRPT 172 (297)
T ss_pred cEEEEeccccccceeecCCCCCCeEEECCC-cHHHHHHHHHhhhcCCCCCceEEEEeccccccchHHHHHhcCCCcCCCe
Confidence 68999999876555555443 467888887 7777777666665542 2368999999994 1 12 33556
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
++++-.++.+++++...+++..+.....||..+++..
T Consensus 173 ~~iaEGLl~YL~~~~v~~ll~~I~~~~~~gS~~~~~~ 209 (297)
T COG3315 173 LWIAEGLLMYLPEEAVDRLLSRIAALSAPGSRVAFDY 209 (297)
T ss_pred EEEeccccccCCHHHHHHHHHHHHHhCCCCceEEEec
Confidence 7888999999999999999999999999998776644
No 314
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=95.22 E-value=0.1 Score=43.30 Aligned_cols=87 Identities=18% Similarity=0.116 Sum_probs=56.9
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~ 184 (231)
++.+||-+|||. |..+..+++ .|.+ ++++|.+++.++.+.... ++ |..+. ....+|+|+....-
T Consensus 144 ~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~~~~rl~~a~~~~----------~i--~~~~~-~~~g~Dvvid~~G~ 210 (308)
T TIGR01202 144 KVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWETNPRRRDGATGYE----------VL--DPEKD-PRRDYRAIYDASGD 210 (308)
T ss_pred CCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHhhhhcc----------cc--Chhhc-cCCCCCEEEECCCC
Confidence 457899999875 777777776 6775 777898887766664321 11 10010 12468999854321
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
...+..+.+.|+++|++++..+.
T Consensus 211 --------~~~~~~~~~~l~~~G~iv~~G~~ 233 (308)
T TIGR01202 211 --------PSLIDTLVRRLAKGGEIVLAGFY 233 (308)
T ss_pred --------HHHHHHHHHhhhcCcEEEEEeec
Confidence 13467788899999999887764
No 315
>KOG2912 consensus Predicted DNA methylase [Function unknown]
Probab=95.06 E-value=0.085 Score=43.50 Aligned_cols=90 Identities=17% Similarity=0.161 Sum_probs=61.6
Q ss_pred cHHHHHHHHcCCCCCC---cEEEecCCCchHHHHhc--CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-
Q 026903 95 APIIVHLHQSGALPKG---RALVPGCGTGYDVVAMA--SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT- 168 (231)
Q Consensus 95 ~~~~~~~~~~~~~~~~---~vLDiGcG~G~~~~~l~--~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~- 168 (231)
-..+.+++........ +-+|||.|+.-.--.+- ..+...+++|+++..+..|.++...+++.+.+.+++.+-..
T Consensus 86 ihwI~DLLss~q~~k~~i~~GiDIgtgasci~~llg~rq~n~~f~~teidd~s~~~a~snV~qn~lss~ikvV~~~~~kt 165 (419)
T KOG2912|consen 86 IHWIEDLLSSQQSDKSTIRRGIDIGTGASCIYPLLGARQNNWYFLATEIDDMSFNYAKSNVEQNNLSSLIKVVKVEPQKT 165 (419)
T ss_pred HHHHHHHhhcccCCCcceeeeeeccCchhhhHHhhhchhccceeeeeeccccccchhhccccccccccceeeEEecchhh
Confidence 3456777765532222 35899988753322222 25678999999999999999999998888778777764433
Q ss_pred -------CCCCCceeEEEeCCcc
Q 026903 169 -------WCPTELFDLIFDYTFF 184 (231)
Q Consensus 169 -------~~~~~~fD~i~~~~~~ 184 (231)
..++..||+++|+..|
T Consensus 166 ll~d~~~~~~e~~ydFcMcNPPF 188 (419)
T KOG2912|consen 166 LLMDALKEESEIIYDFCMCNPPF 188 (419)
T ss_pred cchhhhccCccceeeEEecCCch
Confidence 2234469999998654
No 316
>PTZ00357 methyltransferase; Provisional
Probab=95.04 E-value=0.093 Score=47.74 Aligned_cols=94 Identities=18% Similarity=0.130 Sum_probs=59.7
Q ss_pred cEEEecCCCchHHHHhcC----CC--CeEEEEeCChHHHHHHHHHh-ccCCC-------CCceEEEEccCCCCCCC----
Q 026903 111 RALVPGCGTGYDVVAMAS----PE--RYVVGLEISDIAIKKAEELS-SSLPN-------AKFVSFLKADFFTWCPT---- 172 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~----~~--~~v~~iD~s~~~i~~a~~~~-~~~~~-------~~~i~~~~~d~~~~~~~---- 172 (231)
.|+-+|+|-|=+....++ .+ .+++++|-++..+.....+. ....+ ..+++++..|+.++..+
T Consensus 703 VImVVGAGRGPLVdraLrAak~~gvkVrIyAVEKNPpAA~~tllr~~N~eeW~n~~~~~G~~VtII~sDMR~W~~pe~~~ 782 (1072)
T PTZ00357 703 HLVLLGCGRGPLIDECLHAVSALGVRLRIFAIEKNLPAAAFTRMRWANDPEWTQLAYTFGHTLEVIVADGRTIATAAENG 782 (1072)
T ss_pred EEEEEcCCccHHHHHHHHHHHHcCCcEEEEEEecCcchHHHHHHHHhcccccccccccCCCeEEEEeCcccccccccccc
Confidence 689999999977655543 23 48999999976554444332 11122 34699999999996432
Q ss_pred --------CceeEEEeCC--cc--cccChHHHHHHHHHHHhhcCC----CcE
Q 026903 173 --------ELFDLIFDYT--FF--CAIEPEMRAAWAQKIKDFLKP----DGE 208 (231)
Q Consensus 173 --------~~fD~i~~~~--~~--~~~~~~~~~~~l~~~~~~L~p----gG~ 208 (231)
+.+|+|++-. .| .-++|+- |..+.+.||+ +|+
T Consensus 783 s~~~P~~~gKaDIVVSELLGSFGDNELSPEC----LDGaQrfLKdiqhsdGI 830 (1072)
T PTZ00357 783 SLTLPADFGLCDLIVSELLGSLGDNELSPEC----LEAFHAQLEDIQLSRGI 830 (1072)
T ss_pred cccccccccccceehHhhhcccccccCCHHH----HHHHHHhhhhhcccccc
Confidence 2699999842 22 2245444 4555555554 665
No 317
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=95.02 E-value=0.056 Score=45.24 Aligned_cols=97 Identities=18% Similarity=0.187 Sum_probs=59.1
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEcc---CCCCCCCCceeEEEe
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFTWCPTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~~~~~~~fD~i~~ 180 (231)
.++.+||-.|+|. |..+..+++ .|.+ |++++.+++..+.+++.-... -+.....+ +.+......+|+|+.
T Consensus 162 ~~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~~~~~~~~~~~~~ga~~----~i~~~~~~~~~~~~~~~~~~~d~vid 237 (339)
T cd08239 162 SGRDTVLVVGAGPVGLGALMLARALGAEDVIGVDPSPERLELAKALGADF----VINSGQDDVQEIRELTSGAGADVAIE 237 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCCE----EEcCCcchHHHHHHHhCCCCCCEEEE
Confidence 4567899898764 556666666 7777 999999999888886532110 01111111 111122346999984
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
...- ...+....+.|+++|.+++....
T Consensus 238 ~~g~--------~~~~~~~~~~l~~~G~~v~~g~~ 264 (339)
T cd08239 238 CSGN--------TAARRLALEAVRPWGRLVLVGEG 264 (339)
T ss_pred CCCC--------HHHHHHHHHHhhcCCEEEEEcCC
Confidence 3221 12356677889999999877654
No 318
>KOG2078 consensus tRNA modification enzyme [RNA processing and modification]
Probab=94.99 E-value=0.03 Score=47.80 Aligned_cols=65 Identities=12% Similarity=-0.055 Sum_probs=57.0
Q ss_pred CCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCc-eEEEEccCCCC
Q 026903 105 GALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKF-VSFLKADFFTW 169 (231)
Q Consensus 105 ~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~-i~~~~~d~~~~ 169 (231)
...++..|.|+.||.|-++..++..+..|++-|.++++++..+.++..+.+.+. +.+...|....
T Consensus 246 ~fk~gevv~D~FaGvGPfa~Pa~kK~crV~aNDLNpesik~Lk~ni~lNkv~~~~iei~Nmda~~F 311 (495)
T KOG2078|consen 246 LFKPGEVVCDVFAGVGPFALPAAKKGCRVYANDLNPESIKWLKANIKLNKVDPSAIEIFNMDAKDF 311 (495)
T ss_pred ccCCcchhhhhhcCcCccccchhhcCcEEEecCCCHHHHHHHHHhccccccchhheeeecccHHHH
Confidence 456778999999999999999999999999999999999999999988877665 88888776663
No 319
>PF10237 N6-adenineMlase: Probable N6-adenine methyltransferase; InterPro: IPR019369 This family of proteins, which are of approximately 200 residues in length, contain a highly conserved Glu-Phe-Trp (QFW) motif close to the N terminus and an Asp/Asn-Pro-Pro-Tyr/Phe motif in the centre. This latter motif is characteristic of N-6 adenine-specific DNA methylases and could be involved in substrate binding or in the catalytic activity (, ).
Probab=94.97 E-value=0.46 Score=35.60 Aligned_cols=106 Identities=22% Similarity=0.210 Sum_probs=71.3
Q ss_pred cHHHHHHHHcCCCCCCcEEEecCCCchHHHHh-cCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--C
Q 026903 95 APIIVHLHQSGALPKGRALVPGCGTGYDVVAM-ASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--P 171 (231)
Q Consensus 95 ~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l-~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~ 171 (231)
...+.+.+.....+..+|+-+||=+-+..+.- ...+.+++..|++...-... ++ .|..-|...+. +
T Consensus 12 ~~~l~~~l~~~~~~~~~iaclstPsl~~~l~~~~~~~~~~~Lle~D~RF~~~~----------~~-~F~fyD~~~p~~~~ 80 (162)
T PF10237_consen 12 AEFLARELLDGALDDTRIACLSTPSLYEALKKESKPRIQSFLLEYDRRFEQFG----------GD-EFVFYDYNEPEELP 80 (162)
T ss_pred HHHHHHHHHHhcCCCCEEEEEeCcHHHHHHHhhcCCCccEEEEeecchHHhcC----------Cc-ceEECCCCChhhhh
Confidence 33444444444455689999999887666655 33667899999988753322 12 35555555521 1
Q ss_pred ---CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 172 ---TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 172 ---~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
.++||+|++-..+ +..+-..+....+.-++++++.+++++
T Consensus 81 ~~l~~~~d~vv~DPPF--l~~ec~~k~a~ti~~L~k~~~kii~~T 123 (162)
T PF10237_consen 81 EELKGKFDVVVIDPPF--LSEECLTKTAETIRLLLKPGGKIILCT 123 (162)
T ss_pred hhcCCCceEEEECCCC--CCHHHHHHHHHHHHHHhCccceEEEec
Confidence 4689999987776 666777778788888889988887754
No 320
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=94.95 E-value=0.11 Score=41.48 Aligned_cols=95 Identities=19% Similarity=0.157 Sum_probs=60.7
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC------CCCCCceeEE
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT------WCPTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~------~~~~~~fD~i 178 (231)
.++.+||..|+|. |..+..+++ .|.++++++.+++..+.+++.... .++...-.+ ......+|++
T Consensus 133 ~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~~~~~~~~~~~g~~-------~~~~~~~~~~~~~~~~~~~~~~d~v 205 (271)
T cd05188 133 KPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRSDEKLELAKELGAD-------HVIDYKEEDLEEELRLTGGGGADVV 205 (271)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCc-------eeccCCcCCHHHHHHHhcCCCCCEE
Confidence 4568999999986 666666666 778999999998887777553211 111111111 1123579999
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+....-. ..+..+.+.|+++|.++......
T Consensus 206 i~~~~~~--------~~~~~~~~~l~~~G~~v~~~~~~ 235 (271)
T cd05188 206 IDAVGGP--------ETLAQALRLLRPGGRIVVVGGTS 235 (271)
T ss_pred EECCCCH--------HHHHHHHHhcccCCEEEEEccCC
Confidence 8543210 24667788999999988765443
No 321
>cd08237 ribitol-5-phosphate_DH ribitol-5-phosphate dehydrogenase. NAD-linked ribitol-5-phosphate dehydrogenase, a member of the MDR/zinc-dependent alcohol dehydrogenase-like family, oxidizes the phosphate ester of ribitol-5-phosphate to xylulose-5-phosphate of the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (
Probab=94.89 E-value=0.14 Score=43.02 Aligned_cols=93 Identities=15% Similarity=0.101 Sum_probs=59.0
Q ss_pred CCCCcEEEecCCC-chHHHHhcC--C-CCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS--P-ERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~--~-~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~ 182 (231)
.++.+||-+|||. |..+..+++ . +.+|+++|.+++-++.+++ ... ...+ .+ ......+|+|+...
T Consensus 162 ~~g~~VlV~G~G~vGl~~~~~a~~~~g~~~vi~~~~~~~k~~~a~~-~~~------~~~~-~~---~~~~~g~d~viD~~ 230 (341)
T cd08237 162 KDRNVIGVWGDGNLGYITALLLKQIYPESKLVVFGKHQEKLDLFSF-ADE------TYLI-DD---IPEDLAVDHAFECV 230 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhcCCCcEEEEeCcHhHHHHHhh-cCc------eeeh-hh---hhhccCCcEEEECC
Confidence 4568999999876 556666555 3 3589999999988888765 211 1111 11 11112589998533
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
.-. .....+....++|+++|++++..+.
T Consensus 231 G~~-----~~~~~~~~~~~~l~~~G~iv~~G~~ 258 (341)
T cd08237 231 GGR-----GSQSAINQIIDYIRPQGTIGLMGVS 258 (341)
T ss_pred CCC-----ccHHHHHHHHHhCcCCcEEEEEeec
Confidence 210 0124577888999999999887764
No 322
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=94.86 E-value=0.091 Score=45.44 Aligned_cols=97 Identities=13% Similarity=0.054 Sum_probs=63.1
Q ss_pred HHHHHHcC--CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903 98 IVHLHQSG--ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 98 ~~~~~~~~--~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
+..+++.. ..++.+|+-+|||. |.....+++ .|.+|+.+|.++...+.|.+.- .+.. +..+.. .
T Consensus 189 ~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~ViV~d~d~~R~~~A~~~G--------~~~~--~~~e~v--~ 256 (413)
T cd00401 189 IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVIVTEVDPICALQAAMEG--------YEVM--TMEEAV--K 256 (413)
T ss_pred HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECChhhHHHHHhcC--------CEEc--cHHHHH--c
Confidence 44455543 35789999999997 776666665 7889999999998877776521 1111 111222 3
Q ss_pred ceeEEEeCCcccccChHHHHHHHHH-HHhhcCCCcEEEEEEc
Q 026903 174 LFDLIFDYTFFCAIEPEMRAAWAQK-IKDFLKPDGELITLMF 214 (231)
Q Consensus 174 ~fD~i~~~~~~~~~~~~~~~~~l~~-~~~~L~pgG~l~~~~~ 214 (231)
.+|+|+....- ...+.. ..+.+++||+++....
T Consensus 257 ~aDVVI~atG~--------~~~i~~~~l~~mk~GgilvnvG~ 290 (413)
T cd00401 257 EGDIFVTTTGN--------KDIITGEHFEQMKDGAIVCNIGH 290 (413)
T ss_pred CCCEEEECCCC--------HHHHHHHHHhcCCCCcEEEEeCC
Confidence 57999864221 123443 5889999999977664
No 323
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=94.84 E-value=0.066 Score=43.70 Aligned_cols=97 Identities=18% Similarity=0.057 Sum_probs=59.8
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEE--ccCCCCCCCCceeEEEeC
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLK--ADFFTWCPTELFDLIFDY 181 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~--~d~~~~~~~~~fD~i~~~ 181 (231)
.++.+||-+|+|. |..+..+++ .|.+ |+++|.+++..+.+++.-...- +.... ..+.+......+|+++..
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~~----i~~~~~~~~~~~~~~~~g~d~vid~ 194 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAADPSPDRRELALSFGATAL----AEPEVLAERQGGLQNGRGVDVALEF 194 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHcCCcEe----cCchhhHHHHHHHhCCCCCCEEEEC
Confidence 3667999998865 666666666 6775 9999999988888876422110 00000 000111123468999843
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
..- ...++...+.|+++|.+++....
T Consensus 195 ~G~--------~~~~~~~~~~l~~~G~iv~~G~~ 220 (280)
T TIGR03366 195 SGA--------TAAVRACLESLDVGGTAVLAGSV 220 (280)
T ss_pred CCC--------hHHHHHHHHHhcCCCEEEEeccC
Confidence 211 23467788999999999887743
No 324
>KOG2198 consensus tRNA cytosine-5-methylases and related enzymes of the NOL1/NOP2/sun superfamily [Translation, ribosomal structure and biogenesis]
Probab=94.78 E-value=0.31 Score=41.11 Aligned_cols=110 Identities=14% Similarity=0.111 Sum_probs=73.0
Q ss_pred CCCCCcEEEecCCCchHHHHhcCCC------CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---------
Q 026903 106 ALPKGRALVPGCGTGYDVVAMASPE------RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--------- 170 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~~~~~l~~~~------~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--------- 170 (231)
..|+.+|||..+..|.=+..|++.. ..|++=|.++.-+....+.....+ .+++.+...++....
T Consensus 153 v~p~~~VLDmCAAPG~Kt~qLLeal~~~~~~g~vvaND~d~~R~~~L~~q~~~l~-~~~~~v~~~~~~~~p~~~~~~~~~ 231 (375)
T KOG2198|consen 153 VKPGDKVLDMCAAPGGKTAQLLEALHKDPTRGYVVANDVDPKRLNMLVHQLKRLP-SPNLLVTNHDASLFPNIYLKDGND 231 (375)
T ss_pred cCCCCeeeeeccCCCccHHHHHHHHhcCCCCCeeEecccCHHHHHHHHHHHhccC-CcceeeecccceeccccccccCch
Confidence 3467899999999999888887622 279999999998888777664432 234444444444311
Q ss_pred -CCCceeEEEeCC------cccccC---------------hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 171 -PTELFDLIFDYT------FFCAIE---------------PEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 171 -~~~~fD~i~~~~------~~~~~~---------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
....||-|+|-- ++.+-+ +..+..+|.+-.++||+||.|+.++=+.
T Consensus 232 ~~~~~fDrVLvDVPCS~Dgt~rk~~~i~~~~w~~~~~~~L~~LQ~~iL~rgl~lLk~GG~lVYSTCSL 299 (375)
T KOG2198|consen 232 KEQLKFDRVLVDVPCSGDGTLRKNPNIWKEGWKTQRALGLHALQLRILRRGLRLLKVGGRLVYSTCSL 299 (375)
T ss_pred hhhhhcceeEEecccCCCcccccCchHhhhhhhhhhccCChHHHHHHHHHHHHHhcCCCEEEEeccCC
Confidence 123689888731 111100 1233678999999999999998776443
No 325
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=94.68 E-value=0.3 Score=40.90 Aligned_cols=91 Identities=18% Similarity=0.078 Sum_probs=59.3
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~ 184 (231)
.++.+||-.|+|. |..+..+++ .|.+|++++.+++-.+.+++.-... ++. ..+. ..+.+|+++.....
T Consensus 164 ~~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~~~~~~~~~a~~~Ga~~-------vi~--~~~~-~~~~~d~~i~~~~~ 233 (329)
T TIGR02822 164 PPGGRLGLYGFGGSAHLTAQVALAQGATVHVMTRGAAARRLALALGAAS-------AGG--AYDT-PPEPLDAAILFAPA 233 (329)
T ss_pred CCCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHhCCce-------ecc--cccc-CcccceEEEECCCc
Confidence 4567999999764 555666666 7889999999999888887743211 111 1111 12357876632221
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
...+....+.|++||++++....
T Consensus 234 --------~~~~~~~~~~l~~~G~~v~~G~~ 256 (329)
T TIGR02822 234 --------GGLVPPALEALDRGGVLAVAGIH 256 (329)
T ss_pred --------HHHHHHHHHhhCCCcEEEEEecc
Confidence 12467788999999999887764
No 326
>TIGR03451 mycoS_dep_FDH mycothiol-dependent formaldehyde dehydrogenase. Members of this protein family are mycothiol-dependent formaldehyde dehydrogenase (EC 1.2.1.66). This protein is found, so far, only in the Actinobacteria (Mycobacterium sp., Streptomyces sp., Corynebacterium sp., and related species), where mycothione replaces glutathione.
Probab=94.59 E-value=0.056 Score=45.76 Aligned_cols=97 Identities=18% Similarity=0.142 Sum_probs=60.1
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEE
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~ 179 (231)
.++.+||-.|||. |..+..+++ .|. +|+++|.+++..+.+++.-... -+.....+..+ ......+|+|+
T Consensus 175 ~~g~~VlV~G~g~vG~~a~~~ak~~G~~~Vi~~~~~~~~~~~~~~~Ga~~----~i~~~~~~~~~~i~~~~~~~g~d~vi 250 (358)
T TIGR03451 175 KRGDSVAVIGCGGVGDAAIAGAALAGASKIIAVDIDDRKLEWAREFGATH----TVNSSGTDPVEAIRALTGGFGADVVI 250 (358)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCce----EEcCCCcCHHHHHHHHhCCCCCCEEE
Confidence 3567999999865 666677776 777 5999999999888886532110 01111111111 11223689998
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
....- ...+....+.+++||++++....
T Consensus 251 d~~g~--------~~~~~~~~~~~~~~G~iv~~G~~ 278 (358)
T TIGR03451 251 DAVGR--------PETYKQAFYARDLAGTVVLVGVP 278 (358)
T ss_pred ECCCC--------HHHHHHHHHHhccCCEEEEECCC
Confidence 53221 12456677899999999887654
No 327
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=94.49 E-value=0.058 Score=46.87 Aligned_cols=105 Identities=13% Similarity=0.168 Sum_probs=63.2
Q ss_pred CCCCCcEEEecCCC-chHHHHhc-C-CCCeEE------EEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCcee
Q 026903 106 ALPKGRALVPGCGT-GYDVVAMA-S-PERYVV------GLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFD 176 (231)
Q Consensus 106 ~~~~~~vLDiGcG~-G~~~~~l~-~-~~~~v~------~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD 176 (231)
.+.+++|+-||||+ |. +..+- + .|.+|+ ++|......+.|.+. + . ...++.+.. ...|
T Consensus 33 ~LkgKtIaIIGyGSqG~-AqAlNLrdSGvnVvvglr~~~id~~~~s~~kA~~d----G----F--~v~~~~Ea~--~~AD 99 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGL-NQGLNMRDSGLDISYALRKEAIAEKRASWRKATEN----G----F--KVGTYEELI--PQAD 99 (487)
T ss_pred HhCCCEEEEEccCHHHH-HHhCCCccccceeEEeccccccccccchHHHHHhc----C----C--ccCCHHHHH--HhCC
Confidence 35568999999998 55 22222 2 566776 667667766666543 1 1 123333332 3578
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE-ccCCCCCCCCCCCCC
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM-FPISDHVGGPPYKVS 228 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~-~~~~~~~~~~~~~~~ 228 (231)
+|++ .+|++....+.+++...||||..|.+.+ |..-...--||-+++
T Consensus 100 vVvi-----LlPDt~q~~v~~~i~p~LK~Ga~L~fsHGFni~~~~i~~~~dvd 147 (487)
T PRK05225 100 LVIN-----LTPDKQHSDVVRAVQPLMKQGAALGYSHGFNIVEVGEQIRKDIT 147 (487)
T ss_pred EEEE-----cCChHHHHHHHHHHHhhCCCCCEEEecCCceeeeCceeCCCCCc
Confidence 8883 3455556777799999999999987643 433322222444443
No 328
>COG1255 Uncharacterized protein conserved in archaea [Function unknown]
Probab=94.45 E-value=0.37 Score=33.66 Aligned_cols=87 Identities=17% Similarity=0.126 Sum_probs=57.3
Q ss_pred CcEEEecCCCc-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCCcccc
Q 026903 110 GRALVPGCGTG-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFFCA 186 (231)
Q Consensus 110 ~~vLDiGcG~G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~i~~~~~~~~ 186 (231)
++|.|+|-|.= ..+..|++.|..++++|+++. .+. ..+.|+..|++++... ...|+|++.-
T Consensus 15 gkVvEVGiG~~~~VA~~L~e~g~dv~atDI~~~---~a~---------~g~~~v~DDitnP~~~iY~~A~lIYSiR---- 78 (129)
T COG1255 15 GKVVEVGIGFFLDVAKRLAERGFDVLATDINEK---TAP---------EGLRFVVDDITNPNISIYEGADLIYSIR---- 78 (129)
T ss_pred CcEEEEccchHHHHHHHHHHcCCcEEEEecccc---cCc---------ccceEEEccCCCccHHHhhCccceeecC----
Confidence 59999999874 456677779999999999887 111 2378999999996432 4689998633
Q ss_pred cChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 187 IEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
++.+....+-.+.+.+ |.-+++....
T Consensus 79 -pppEl~~~ildva~aV--ga~l~I~pL~ 104 (129)
T COG1255 79 -PPPELQSAILDVAKAV--GAPLYIKPLT 104 (129)
T ss_pred -CCHHHHHHHHHHHHhh--CCCEEEEecC
Confidence 2333344444455444 3345554443
No 329
>PRK01747 mnmC bifunctional tRNA (mnm(5)s(2)U34)-methyltransferase/FAD-dependent cmnm(5)s(2)U34 oxidoreductase; Reviewed
Probab=94.44 E-value=0.19 Score=46.37 Aligned_cols=104 Identities=19% Similarity=0.197 Sum_probs=62.6
Q ss_pred CcEEEecCCCchHHHHhcC---------C-----CCeEEEEeCCh---HHHHHH-----------HHHhccC-----CC-
Q 026903 110 GRALVPGCGTGYDVVAMAS---------P-----ERYVVGLEISD---IAIKKA-----------EELSSSL-----PN- 155 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~---------~-----~~~v~~iD~s~---~~i~~a-----------~~~~~~~-----~~- 155 (231)
-+|+|+|-|+|.+.+...+ + -.+++++|..| +-+..+ .+..... +.
T Consensus 59 ~~i~e~gfG~G~N~l~~~~~~~~~~~~~~~~~~~~l~~~s~E~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~g~~ 138 (662)
T PRK01747 59 FVIAETGFGTGLNFLATWQAFDQFRQRHPPARLKRLHFISFEKFPLTRADLARAHQHWPELAPLAEQLQAQWPLLLPGCH 138 (662)
T ss_pred EEEEecCcchHHHHHHHHHHHHHhhhhCCCCCCceEEEEEEECCCCCHHHHHHHHhhCcccHHHHHHHHHhCCccCCCce
Confidence 6999999999987665542 1 13899999654 222222 1111110 10
Q ss_pred -----C--CceEEEEccCCCCCC--CCceeEEEeCCcccccChH-HHHHHHHHHHhhcCCCcEEEEEE
Q 026903 156 -----A--KFVSFLKADFFTWCP--TELFDLIFDYTFFCAIEPE-MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 156 -----~--~~i~~~~~d~~~~~~--~~~fD~i~~~~~~~~~~~~-~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
. -++++..+|+.+..+ ...+|+|+.-.+-..-.|+ =...+++.+.++++|||.+...+
T Consensus 139 ~~~~~~~~~~l~l~~gd~~~~~~~~~~~~d~~~lD~FsP~~np~~W~~~~~~~l~~~~~~~~~~~t~t 206 (662)
T PRK01747 139 RLLFDDGRVTLDLWFGDANELLPQLDARADAWFLDGFAPAKNPDMWSPNLFNALARLARPGATLATFT 206 (662)
T ss_pred EEEecCCcEEEEEEecCHHHHHHhccccccEEEeCCCCCccChhhccHHHHHHHHHHhCCCCEEEEee
Confidence 1 145577788877332 2469999965432221111 11578999999999999987543
No 330
>KOG3924 consensus Putative protein methyltransferase involved in meiosis and transcriptional silencing (Dot1) [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=94.37 E-value=0.11 Score=43.98 Aligned_cols=111 Identities=20% Similarity=0.199 Sum_probs=73.5
Q ss_pred HHHHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCC--CeEEEEeCChHHHHHHHH----------HhccCCCCCceEEE
Q 026903 96 PIIVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPE--RYVVGLEISDIAIKKAEE----------LSSSLPNAKFVSFL 162 (231)
Q Consensus 96 ~~~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~--~~v~~iD~s~~~i~~a~~----------~~~~~~~~~~i~~~ 162 (231)
..+..+.++... ++....|+|.|.|....+++..+ ..-+|+++.+..-+.+.. .+... ...+..+
T Consensus 179 ~ql~si~dEl~~g~~D~F~DLGSGVGqlv~~~aa~a~~k~svG~eim~~pS~~a~~~~~~~kk~~k~fGk~--~~~~~~i 256 (419)
T KOG3924|consen 179 EQLRSIVDELKLGPADVFMDLGSGVGQLVCFVAAYAGCKKSVGFEIMDKPSQCAELNKEEFKKLMKHFGKK--PNKIETI 256 (419)
T ss_pred HHHHHHHHHhccCCCCcccCCCcccchhhHHHHHhhccccccceeeecCcHHHHHHHHHHHHHHHHHhCCC--cCceeec
Confidence 345556666544 45799999999999999988733 366777776554433322 22221 2357888
Q ss_pred EccCCCCC----CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 163 KADFFTWC----PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 163 ~~d~~~~~----~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
++++.++. .....++|+.+.+. ++++..-+ +.++..-+++|.+++-
T Consensus 257 ~gsf~~~~~v~eI~~eatvi~vNN~~--Fdp~L~lr-~~eil~~ck~gtrIiS 306 (419)
T KOG3924|consen 257 HGSFLDPKRVTEIQTEATVIFVNNVA--FDPELKLR-SKEILQKCKDGTRIIS 306 (419)
T ss_pred ccccCCHHHHHHHhhcceEEEEeccc--CCHHHHHh-hHHHHhhCCCcceEec
Confidence 88888832 12368899988775 44444333 4589999999999864
No 331
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=94.35 E-value=0.16 Score=42.59 Aligned_cols=96 Identities=20% Similarity=0.246 Sum_probs=64.6
Q ss_pred CCCcEEEecCC--CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEEe
Q 026903 108 PKGRALVPGCG--TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG--~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~~ 180 (231)
++.+||-.|+. .|.++.+|++ .|..++++--+++-.+.+++..... -+.+...|+.+ ......+|+|+.
T Consensus 142 ~g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s~~k~~~~~~lGAd~----vi~y~~~~~~~~v~~~t~g~gvDvv~D 217 (326)
T COG0604 142 PGETVLVHGAAGGVGSAAIQLAKALGATVVAVVSSSEKLELLKELGADH----VINYREEDFVEQVRELTGGKGVDVVLD 217 (326)
T ss_pred CCCEEEEecCCchHHHHHHHHHHHcCCcEEEEecCHHHHHHHHhcCCCE----EEcCCcccHHHHHHHHcCCCCceEEEE
Confidence 46889998844 4788888888 6667888887777777666654322 13344444444 222347999995
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
.-. ...+......|+++|.++.+....
T Consensus 218 ~vG---------~~~~~~~l~~l~~~G~lv~ig~~~ 244 (326)
T COG0604 218 TVG---------GDTFAASLAALAPGGRLVSIGALS 244 (326)
T ss_pred CCC---------HHHHHHHHHHhccCCEEEEEecCC
Confidence 332 234677889999999998877765
No 332
>cd08281 liver_ADH_like1 Zinc-dependent alcohol dehydrogenases (ADH) and class III ADG (AKA formaldehyde dehydrogenase). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. This group contains members identified as zinc dependent alcohol dehydrogenases (ADH), and class III ADG (aka formaldehyde dehydrogenase, FDH). Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also know as glutathione-dependent formaldehyde dehyd
Probab=94.34 E-value=0.086 Score=44.89 Aligned_cols=97 Identities=18% Similarity=0.174 Sum_probs=59.4
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-C--CCCCceeEEEe
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-W--CPTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~--~~~~~fD~i~~ 180 (231)
.++.+||-.|+|. |..+..+++ .|. +|+++|.+++..+.+++.-... -+.....++.+ . ...+.+|+|+.
T Consensus 190 ~~g~~VlV~G~G~vG~~a~~lak~~G~~~Vi~~~~~~~r~~~a~~~Ga~~----~i~~~~~~~~~~i~~~~~~g~d~vid 265 (371)
T cd08281 190 RPGQSVAVVGLGGVGLSALLGAVAAGASQVVAVDLNEDKLALARELGATA----TVNAGDPNAVEQVRELTGGGVDYAFE 265 (371)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHcCCce----EeCCCchhHHHHHHHHhCCCCCEEEE
Confidence 3457888898865 666666666 777 6999999999988886532110 01111111111 0 11226899985
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
...- ...+....++|+++|.++.....
T Consensus 266 ~~G~--------~~~~~~~~~~l~~~G~iv~~G~~ 292 (371)
T cd08281 266 MAGS--------VPALETAYEITRRGGTTVTAGLP 292 (371)
T ss_pred CCCC--------hHHHHHHHHHHhcCCEEEEEccC
Confidence 3221 12466778899999998876653
No 333
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=94.16 E-value=0.11 Score=43.67 Aligned_cols=95 Identities=16% Similarity=0.156 Sum_probs=58.6
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEc---c---CCCCCCCCcee-
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---D---FFTWCPTELFD- 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d---~~~~~~~~~fD- 176 (231)
.++.+||-.|+|. |..+..+++ .|.+ |++++.+++..+.+++.-.. .++.. + +........+|
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~Ga~-------~~i~~~~~~~~~~~~~~~~~~~d~ 231 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAIDINSEKLALAKSLGAM-------QTFNSREMSAPQIQSVLRELRFDQ 231 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCCc-------eEecCcccCHHHHHHHhcCCCCCe
Confidence 3567999998865 666666666 7775 78999999988877543211 11111 1 11122233577
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+|+....- ...+....++|++||.+++..+..
T Consensus 232 ~v~d~~G~--------~~~~~~~~~~l~~~G~iv~~G~~~ 263 (347)
T PRK10309 232 LILETAGV--------PQTVELAIEIAGPRAQLALVGTLH 263 (347)
T ss_pred EEEECCCC--------HHHHHHHHHHhhcCCEEEEEccCC
Confidence 66632211 235677889999999998877543
No 334
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=94.11 E-value=1.2 Score=34.99 Aligned_cols=104 Identities=11% Similarity=-0.019 Sum_probs=62.1
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026903 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~ 173 (231)
.+++||-.|++.| ..+..+++.|.+|++++.+++......+..... .+++++.+|+.+... -+
T Consensus 4 ~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~~~~~~~~~~~~~~ 80 (238)
T PRK05786 4 KGKKVAIIGVSEGLGYAVAYFALKEGAQVCINSRNENKLKRMKKTLSKY---GNIHYVVGDVSSTESARNVIEKAAKVLN 80 (238)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc---CCeEEEECCCCCHHHHHHHHHHHHHHhC
Confidence 4578999998643 223344458999999999987766554433222 257889999987220 12
Q ss_pred ceeEEEeCCccccc-ChHH--------------HHHHHHHHHhhcCCCcEEEEEEc
Q 026903 174 LFDLIFDYTFFCAI-EPEM--------------RAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 174 ~fD~i~~~~~~~~~-~~~~--------------~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.+|.++........ +... ...+++.+...++++|.+++..-
T Consensus 81 ~id~ii~~ag~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~~~iv~~ss 136 (238)
T PRK05786 81 AIDGLVVTVGGYVEDTVEEFSGLEEMLTNHIKIPLYAVNASLRFLKEGSSIVLVSS 136 (238)
T ss_pred CCCEEEEcCCCcCCCchHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCEEEEEec
Confidence 46877765432111 0011 12335666667778887766554
No 335
>PF07279 DUF1442: Protein of unknown function (DUF1442); InterPro: IPR009902 This family consists of several hypothetical Arabidopsis thaliana proteins of around 225 residues in length. The function of this family is unknown.
Probab=93.95 E-value=1.4 Score=34.46 Aligned_cols=112 Identities=14% Similarity=0.100 Sum_probs=66.5
Q ss_pred CCCCcEEEecCCCch--HHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-CCC-CCceeEE
Q 026903 107 LPKGRALVPGCGTGY--DVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-WCP-TELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~--~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-~~~-~~~fD~i 178 (231)
.+.+.++++.|+.|. .++.|+- -|.++++|-++++.+...++.+...+..+.++|+.++..+ ..+ -...|++
T Consensus 40 ~nAkliVe~~s~g~~~~ttiaLaaAAr~TgGR~vCIvp~~~~~~~~~~~l~~~~~~~~vEfvvg~~~e~~~~~~~~iDF~ 119 (218)
T PF07279_consen 40 WNAKLIVEAWSSGGAISTTIALAAAARQTGGRHVCIVPDEQSLSEYKKALGEAGLSDVVEFVVGEAPEEVMPGLKGIDFV 119 (218)
T ss_pred ccceEEEEEecCCCchHhHHHHHHHHHhcCCeEEEEcCChhhHHHHHHHHhhccccccceEEecCCHHHHHhhccCCCEE
Confidence 344788988766442 3444432 6679999999999888888877766666667999887543 222 2468888
Q ss_pred EeCCcccccChHHHH-HHHHHHHhhcCCCcEEEEEEccCCCCCCCCCC
Q 026903 179 FDYTFFCAIEPEMRA-AWAQKIKDFLKPDGELITLMFPISDHVGGPPY 225 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~-~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~ 225 (231)
+...-. ++.. ++|+.+. +.|.|-+++.........+|..|
T Consensus 120 vVDc~~-----~d~~~~vl~~~~--~~~~GaVVV~~Na~~r~~~~~~w 160 (218)
T PF07279_consen 120 VVDCKR-----EDFAARVLRAAK--LSPRGAVVVCYNAFSRSTNGFSW 160 (218)
T ss_pred EEeCCc-----hhHHHHHHHHhc--cCCCceEEEEeccccCCcCCccH
Confidence 832211 2222 4444322 45667766655444333344444
No 336
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=93.73 E-value=0.83 Score=37.92 Aligned_cols=100 Identities=12% Similarity=-0.048 Sum_probs=60.4
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHH--hccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEEL--SSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~--~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~ 185 (231)
++|+-+|+|. |.++..|++.|..|+.++.+++.++..++. +.-.. ...............+.+.||+|+..-=-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r~~~~~~~i~~~~Gl~i~~-~g~~~~~~~~~~~~~~~~~~D~viv~vK~- 80 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILRDRQRLAAYQQAGGLTLVE-QGQASLYAIPAETADAAEPIHRLLLACKA- 80 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEechHHHHHHhhcCCeEEee-CCcceeeccCCCCcccccccCEEEEECCH-
Confidence 5799999996 567888888888999999987766666542 11000 00111111111111123478988842111
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
.+....++.+...+.++..++...-.
T Consensus 81 ----~~~~~al~~l~~~l~~~t~vv~lQNG 106 (305)
T PRK05708 81 ----YDAEPAVASLAHRLAPGAELLLLQNG 106 (305)
T ss_pred ----HhHHHHHHHHHhhCCCCCEEEEEeCC
Confidence 23356788889999999987776543
No 337
>TIGR00675 dcm DNA-methyltransferase (dcm). All proteins in this family for which functions are known are DNA-cytosine methyltransferases. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=93.55 E-value=0.2 Score=41.87 Aligned_cols=63 Identities=19% Similarity=0.093 Sum_probs=47.7
Q ss_pred EEEecCCCchHHHHhcCCCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEeC
Q 026903 112 ALVPGCGTGYDVVAMASPERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFDY 181 (231)
Q Consensus 112 vLDiGcG~G~~~~~l~~~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~~ 181 (231)
|+|+.||.|.+..-+...|.+ +.++|+++.+++.-+.+... .++.+|+.+... -..+|+++..
T Consensus 1 vidLF~G~GG~~~Gl~~aG~~~~~a~e~~~~a~~ty~~N~~~-------~~~~~Di~~~~~~~~~~~dvl~gg 66 (315)
T TIGR00675 1 FIDLFAGIGGIRLGFEQAGFKCVFASEIDKYAQKTYEANFGN-------KVPFGDITKISPSDIPDFDILLGG 66 (315)
T ss_pred CEEEecCccHHHHHHHHcCCeEEEEEeCCHHHHHHHHHhCCC-------CCCccChhhhhhhhCCCcCEEEec
Confidence 689999999999999888885 56799999999988887642 234567766332 1257888864
No 338
>PF00145 DNA_methylase: C-5 cytosine-specific DNA methylase; InterPro: IPR001525 C-5 cytosine-specific DNA methylases (2.1.1.37 from EC) (C5 Mtase) are enzymes that specifically methylate the C-5 carbon of cytosines in DNA to produce C5-methylcytosine [, , ]. In mammalian cells, cytosine-specific methyltransferases methylate certain CpG sequences, which are believed to modulate gene expression and cell differentiation. In bacteria, these enzymes are a component of restriction-modification systems and serve as valuable tools for the manipulation of DNA [, ]. The structure of HhaI methyltransferase (M.HhaI) has been resolved to 2.5 A []: the molecule folds into 2 domains - a larger catalytic domain containing catalytic and cofactor binding sites, and a smaller DNA recognition domain.; GO: 0003677 DNA binding, 0006306 DNA methylation; PDB: 4DA4_A 3PT6_B 3AV6_A 3AV5_A 3AV4_A 3PT9_A 1DCT_A 3LX6_A 3ME5_A 2QRV_A ....
Probab=93.52 E-value=0.11 Score=43.26 Aligned_cols=62 Identities=16% Similarity=0.074 Sum_probs=50.3
Q ss_pred cEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----CCCceeEEEeC
Q 026903 111 RALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----PTELFDLIFDY 181 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----~~~~fD~i~~~ 181 (231)
+++|+.||.|.+..-+...|. .+.++|+++.+++.-+.+.. ....+|+.+.. +. .+|+++..
T Consensus 2 ~~~dlFsG~Gg~~~g~~~ag~~~~~a~e~~~~a~~~y~~N~~--------~~~~~Di~~~~~~~l~~-~~D~l~gg 68 (335)
T PF00145_consen 2 KVIDLFSGIGGFSLGLEQAGFEVVWAVEIDPDACETYKANFP--------EVICGDITEIDPSDLPK-DVDLLIGG 68 (335)
T ss_dssp EEEEET-TTTHHHHHHHHTTEEEEEEEESSHHHHHHHHHHHT--------EEEESHGGGCHHHHHHH-T-SEEEEE
T ss_pred cEEEEccCccHHHHHHHhcCcEEEEEeecCHHHHHhhhhccc--------ccccccccccccccccc-cceEEEec
Confidence 789999999999999999886 78999999999999998873 67788888833 22 59999864
No 339
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=93.51 E-value=0.51 Score=41.99 Aligned_cols=97 Identities=18% Similarity=0.299 Sum_probs=61.2
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC--------------C-
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT--------------W- 169 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~--------------~- 169 (231)
.++.+|+-+|||. |..+..+++ .|..|+++|.+++.++.+++.- .+++..|..+ .
T Consensus 162 vp~akVlViGaG~iGl~Aa~~ak~lGA~V~v~d~~~~rle~a~~lG--------a~~v~v~~~e~g~~~~gYa~~~s~~~ 233 (511)
T TIGR00561 162 VPPAKVLVIGAGVAGLAAIGAANSLGAIVRAFDTRPEVKEQVQSMG--------AEFLELDFKEEGGSGDGYAKVMSEEF 233 (511)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHcC--------CeEEeccccccccccccceeecCHHH
Confidence 3568999999997 666666666 7889999999999888777621 1222222111 0
Q ss_pred -------CC--CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 170 -------CP--TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 170 -------~~--~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
.. -..+|+|++.....--+.+ .-+.++..+.+|||++++=+.
T Consensus 234 ~~~~~~~~~e~~~~~DIVI~TalipG~~aP--~Lit~emv~~MKpGsvIVDlA 284 (511)
T TIGR00561 234 IAAEMELFAAQAKEVDIIITTALIPGKPAP--KLITEEMVDSMKAGSVIVDLA 284 (511)
T ss_pred HHHHHHHHHHHhCCCCEEEECcccCCCCCC--eeehHHHHhhCCCCCEEEEee
Confidence 11 1369999876533222111 113566789999999865433
No 340
>PRK11524 putative methyltransferase; Provisional
Probab=93.50 E-value=0.13 Score=42.19 Aligned_cols=55 Identities=22% Similarity=0.393 Sum_probs=39.5
Q ss_pred ceEEEEccCCC---CCCCCceeEEEeCCcccc------c----Ch----HHHHHHHHHHHhhcCCCcEEEEE
Q 026903 158 FVSFLKADFFT---WCPTELFDLIFDYTFFCA------I----EP----EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 158 ~i~~~~~d~~~---~~~~~~fD~i~~~~~~~~------~----~~----~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
+..++++|..+ ..++++||+|++...+.. . .. +-...++..+.++|||||.+++.
T Consensus 8 ~~~i~~gD~~~~l~~l~~~siDlIitDPPY~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~rvLK~~G~i~i~ 79 (284)
T PRK11524 8 AKTIIHGDALTELKKIPSESVDLIFADPPYNIGKNFDGLIEAWKEDLFIDWLYEWIDECHRVLKKQGTMYIM 79 (284)
T ss_pred CCEEEeccHHHHHHhcccCcccEEEECCCcccccccccccccccHHHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 35688899888 346679999999755421 0 00 12257889999999999999875
No 341
>PRK05854 short chain dehydrogenase; Provisional
Probab=93.47 E-value=1.4 Score=36.54 Aligned_cols=78 Identities=15% Similarity=0.054 Sum_probs=51.9
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 172 (231)
+.++++|-.|++.| ..+..|++.|.+|+.+..+.+..+.+.+.+.......++.++.+|+.+.. ..
T Consensus 12 l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~R~~~~~~~~~~~l~~~~~~~~v~~~~~Dl~d~~sv~~~~~~~~~~~ 91 (313)
T PRK05854 12 LSGKRAVVTGASDGLGLGLARRLAAAGAEVILPVRNRAKGEAAVAAIRTAVPDAKLSLRALDLSSLASVAALGEQLRAEG 91 (313)
T ss_pred cCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhCCCCceEEEEecCCCHHHHHHHHHHHHHhC
Confidence 34578888888766 33455566899999999988766655554432211235889999998821 12
Q ss_pred CceeEEEeCCcc
Q 026903 173 ELFDLIFDYTFF 184 (231)
Q Consensus 173 ~~fD~i~~~~~~ 184 (231)
+..|+++.+...
T Consensus 92 ~~iD~li~nAG~ 103 (313)
T PRK05854 92 RPIHLLINNAGV 103 (313)
T ss_pred CCccEEEECCcc
Confidence 468999987543
No 342
>COG0863 DNA modification methylase [DNA replication, recombination, and repair]
Probab=93.45 E-value=0.27 Score=40.42 Aligned_cols=60 Identities=23% Similarity=0.272 Sum_probs=51.7
Q ss_pred CcHHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC
Q 026903 94 PAPIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSL 153 (231)
Q Consensus 94 ~~~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~ 153 (231)
|...+.+.+.....++..|||.-+|+|..+......|..++|+|++++.++.+.+++...
T Consensus 208 P~~l~~r~i~~~s~~~diVlDpf~GsGtt~~aa~~~~r~~ig~e~~~~y~~~~~~r~~~~ 267 (302)
T COG0863 208 PLALIERLIRDYSFPGDIVLDPFAGSGTTGIAAKNLGRRFIGIEINPEYVEVALKRLQEG 267 (302)
T ss_pred hHHHHHHHHHhcCCCCCEEeecCCCCChHHHHHHHcCCceEEEecCHHHHHHHHHHHHhh
Confidence 345567777766777899999999999999999889999999999999999999988654
No 343
>PF10354 DUF2431: Domain of unknown function (DUF2431); InterPro: IPR019446 This entry represents the N-terminal domain of a family of proteins whose function is not known.
Probab=93.44 E-value=0.63 Score=35.03 Aligned_cols=99 Identities=20% Similarity=0.180 Sum_probs=56.1
Q ss_pred ecCCCchHHHHhcC--C-CCeEEEE--eCChHHHHHHH---HHhccCCCCCceE-EEEccCCCC---C--CCCceeEEEe
Q 026903 115 PGCGTGYDVVAMAS--P-ERYVVGL--EISDIAIKKAE---ELSSSLPNAKFVS-FLKADFFTW---C--PTELFDLIFD 180 (231)
Q Consensus 115 iGcG~G~~~~~l~~--~-~~~v~~i--D~s~~~i~~a~---~~~~~~~~~~~i~-~~~~d~~~~---~--~~~~fD~i~~ 180 (231)
+|=|.=.++..|++ . +.+++++ |..++..+... +++..... ..+. ....|+... . ....||.|+-
T Consensus 3 vGeGdfSFs~sL~~~~~~~~~l~ATs~ds~~~l~~kY~~~~~nl~~L~~-~g~~V~~~VDat~l~~~~~~~~~~FDrIiF 81 (166)
T PF10354_consen 3 VGEGDFSFSLSLARAFGSATNLVATSYDSEEELLQKYPDAEENLEELRE-LGVTVLHGVDATKLHKHFRLKNQRFDRIIF 81 (166)
T ss_pred eeccchHHHHHHHHHcCCCCeEEEeecCchHHHHHhcccHHHHHHHHhh-cCCccccCCCCCcccccccccCCcCCEEEE
Confidence 44455556666666 2 3456555 44444443322 33333211 1222 334555552 2 3468999995
Q ss_pred CCcccccC-------------hHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 181 YTFFCAIE-------------PEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 181 ~~~~~~~~-------------~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+ +.|.. ......+++.+.++|+++|.++|.....
T Consensus 82 N--FPH~G~~~~~~~~~i~~nr~Ll~~Ff~Sa~~~L~~~G~IhVTl~~~ 128 (166)
T PF10354_consen 82 N--FPHVGGGSEDGKRNIRLNRELLRGFFKSASQLLKPDGEIHVTLKDG 128 (166)
T ss_pred e--CCCCCCCccchhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEEeCCC
Confidence 4 44443 1344788899999999999998876544
No 344
>PF04072 LCM: Leucine carboxyl methyltransferase; InterPro: IPR007213 This entry represents a group of leucine carboxymethyltransferases which methylate the carboxyl group of leucine residues to form alpha-leucine ester residues. It includes LCTM1 which regulates the activity of serine/threonine phosphatase 2A (PP2A) through methylation of the C-terminal leucine residue of the catalytic subunit of PP2A [, , ]. This affects the heteromultimeric composition of PP2A which in turn affects protein recognition and substrate specificity. Like many other methyltransferases LCTM1 uses S-adenosylmethionine (SAM) as the methyl donor. LCTM1 contains the common SAM-dependent methyltransferase core fold, with various insertions and additions creating a specific PP2A binding site []. This entry also contains LCTM2, a homologue of LCTM1 which is not necessary for PP2A methylation and whose function is not clear.; GO: 0008168 methyltransferase activity; PDB: 2UYQ_A 2CKD_B 2UYO_A 2ZZK_B 2ZWA_B 2ZW9_B 1RJE_C 2OB2_B 1RJF_A 1RJD_A ....
Probab=93.35 E-value=0.37 Score=36.81 Aligned_cols=89 Identities=13% Similarity=0.112 Sum_probs=56.8
Q ss_pred CcEEEecCCCchHHHHhcCC--CCeEEEEeCChHHHHHHHHHhccCCC--CCceEEEEccCCCC----------CCCCce
Q 026903 110 GRALVPGCGTGYDVVAMASP--ERYVVGLEISDIAIKKAEELSSSLPN--AKFVSFLKADFFTW----------CPTELF 175 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~--~~~v~~iD~s~~~i~~a~~~~~~~~~--~~~i~~~~~d~~~~----------~~~~~f 175 (231)
..|+.+|||--.....+..+ +..++-+|. |++++.-++.+..... ..+.+++.+|+.+. +.....
T Consensus 80 ~qvV~LGaGlDTr~~Rl~~~~~~~~~~evD~-p~v~~~K~~~l~~~~~~~~~~~~~v~~Dl~~~~~~~~L~~~g~~~~~p 158 (183)
T PF04072_consen 80 RQVVNLGAGLDTRAYRLDNPAGGVRWFEVDL-PEVIALKRRLLPESGARPPANYRYVPADLRDDSWIDALPKAGFDPDRP 158 (183)
T ss_dssp SEEEEET-TT--HHHHHHHTTTTEEEEEEE--HHHHHHHHHHHHHTHHHHHEESSEEES-TTSHHHHHHHHHCTT-TTSE
T ss_pred cEEEEcCCCCCchHHHhhccccceEEEEeCC-HHHHHHHHHHHHhCcccCCcceeEEeccccchhhHHHHHHhCCCCCCC
Confidence 48999999988777777663 457777777 5556555555444311 12356799999971 123567
Q ss_pred eEEEeCCcccccChHHHHHHHHHH
Q 026903 176 DLIFDYTFFCAIEPEMRAAWAQKI 199 (231)
Q Consensus 176 D~i~~~~~~~~~~~~~~~~~l~~~ 199 (231)
-++++-.++.+++++....+++.+
T Consensus 159 tl~i~Egvl~Yl~~~~~~~ll~~i 182 (183)
T PF04072_consen 159 TLFIAEGVLMYLSPEQVDALLRAI 182 (183)
T ss_dssp EEEEEESSGGGS-HHHHHHHHHHH
T ss_pred eEEEEcchhhcCCHHHHHHHHHHh
Confidence 788889999999998877777765
No 345
>COG0270 Dcm Site-specific DNA methylase [DNA replication, recombination, and repair]
Probab=93.12 E-value=0.28 Score=41.24 Aligned_cols=68 Identities=12% Similarity=-0.023 Sum_probs=52.9
Q ss_pred CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC----ceeEEEeCCc
Q 026903 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE----LFDLIFDYTF 183 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~----~fD~i~~~~~ 183 (231)
.+++|+.||.|.+.+-+...|. -+.++|+++.+++.-+.+... -.++..|+.+..... .+|+++....
T Consensus 4 ~~~idLFsG~GG~~lGf~~agf~~~~a~Eid~~a~~ty~~n~~~------~~~~~~di~~~~~~~~~~~~~DvligGpP 76 (328)
T COG0270 4 MKVIDLFAGIGGLSLGFEEAGFEIVFANEIDPPAVATYKANFPH------GDIILGDIKELDGEALRKSDVDVLIGGPP 76 (328)
T ss_pred ceEEeeccCCchHHHHHHhcCCeEEEEEecCHHHHHHHHHhCCC------CceeechHhhcChhhccccCCCEEEeCCC
Confidence 5899999999999999988887 678899999999988887742 346677777633222 6899986543
No 346
>PF03686 UPF0146: Uncharacterised protein family (UPF0146); InterPro: IPR005353 The function of this family of proteins is unknown.; PDB: 2K4M_A.
Probab=93.11 E-value=0.21 Score=35.56 Aligned_cols=91 Identities=20% Similarity=0.129 Sum_probs=48.6
Q ss_pred CCcEEEecCCCc-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCC--CceeEEEeCCccc
Q 026903 109 KGRALVPGCGTG-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPT--ELFDLIFDYTFFC 185 (231)
Q Consensus 109 ~~~vLDiGcG~G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~--~~fD~i~~~~~~~ 185 (231)
..+|+|+|-|.= ..+..|.+.|..|+++|+.+. .+. ..+.++..|++++... ...|+|++.....
T Consensus 14 ~~kiVEVGiG~~~~vA~~L~~~G~dV~~tDi~~~---~a~---------~g~~~v~DDif~P~l~iY~~a~lIYSiRPP~ 81 (127)
T PF03686_consen 14 YGKIVEVGIGFNPEVAKKLKERGFDVIATDINPR---KAP---------EGVNFVVDDIFNPNLEIYEGADLIYSIRPPP 81 (127)
T ss_dssp SSEEEEET-TT--HHHHHHHHHS-EEEEE-SS-S----------------STTEE---SSS--HHHHTTEEEEEEES--T
T ss_pred CCcEEEECcCCCHHHHHHHHHcCCcEEEEECccc---ccc---------cCcceeeecccCCCHHHhcCCcEEEEeCCCh
Confidence 359999999985 445566668899999999987 111 2377999999996432 3799999744322
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
+.. ..+.++++. -|.-|++..++.+.
T Consensus 82 ----El~-~~il~lA~~--v~adlii~pL~~e~ 107 (127)
T PF03686_consen 82 ----ELQ-PPILELAKK--VGADLIIRPLGGES 107 (127)
T ss_dssp ----TSH-HHHHHHHHH--HT-EEEEE-BTTB-
T ss_pred ----HHh-HHHHHHHHH--hCCCEEEECCCCCC
Confidence 222 233344433 35667777766643
No 347
>KOG2651 consensus rRNA adenine N-6-methyltransferase [RNA processing and modification]
Probab=93.09 E-value=0.17 Score=42.86 Aligned_cols=39 Identities=18% Similarity=0.143 Sum_probs=34.4
Q ss_pred CcEEEecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHH
Q 026903 110 GRALVPGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEE 148 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~ 148 (231)
..|+|+|.|.|+++.++.- .|..|++||-|....+.|++
T Consensus 155 ~~vvD~GaG~G~LSr~lSl~y~lsV~aIegsq~~~~ra~r 194 (476)
T KOG2651|consen 155 DQVVDVGAGQGHLSRFLSLGYGLSVKAIEGSQRLVERAQR 194 (476)
T ss_pred CeeEEcCCCchHHHHHHhhccCceEEEeccchHHHHHHHH
Confidence 6999999999999999975 78899999999888777654
No 348
>PLN02740 Alcohol dehydrogenase-like
Probab=92.87 E-value=0.37 Score=41.22 Aligned_cols=94 Identities=15% Similarity=0.144 Sum_probs=59.7
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-----CCC----CCCCCc
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-----FFT----WCPTEL 174 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-----~~~----~~~~~~ 174 (231)
.++.+||-+|||. |..+..+++ .|. +|+++|.+++.++.+++.-. + .++... +.+ ... +.
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~~~~~r~~~a~~~Ga-----~--~~i~~~~~~~~~~~~v~~~~~-~g 268 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVDINPEKFEKGKEMGI-----T--DFINPKDSDKPVHERIREMTG-GG 268 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEcCChHHHHHHHHcCC-----c--EEEecccccchHHHHHHHHhC-CC
Confidence 4567999999875 666666776 777 69999999999888866321 1 122211 111 111 26
Q ss_pred eeEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccC
Q 026903 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPI 216 (231)
Q Consensus 175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~~ 216 (231)
+|+|+....- ...+......+++| |.++++....
T Consensus 269 ~dvvid~~G~--------~~~~~~a~~~~~~g~G~~v~~G~~~ 303 (381)
T PLN02740 269 VDYSFECAGN--------VEVLREAFLSTHDGWGLTVLLGIHP 303 (381)
T ss_pred CCEEEECCCC--------hHHHHHHHHhhhcCCCEEEEEccCC
Confidence 9999853331 12456677788887 9887766543
No 349
>cd08232 idonate-5-DH L-idonate 5-dehydrogenase. L-idonate 5-dehydrogenase (L-ido 5-DH ) catalyzes the conversion of L-lodonate to 5-ketogluconate in the metabolism of L-Idonate to 6-P-gluconate. In E. coli, this GntII pathway is a subsidiary pathway to the canonical GntI system, which also phosphorylates and transports gluconate. L-ido 5-DH is found in an operon with a regulator indR, transporter idnT, 5-keto-D-gluconate 5-reductase, and Gnt kinase. L-ido 5-DH is a zinc-dependent alcohol dehydrogenase-like protein. The alcohol dehydrogenase ADH-like family of proteins is a diverse group of proteins related to the first identified member, class I mammalian ADH. This group is also called the medium chain dehydrogenases/reductase family (MDR) which displays a broad range of activities and are distinguished from the smaller short chain dehydrogenases(~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domai
Probab=92.64 E-value=0.47 Score=39.57 Aligned_cols=93 Identities=22% Similarity=0.341 Sum_probs=59.2
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCCCC-CCCceeEEE
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFTWC-PTELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~~~-~~~~fD~i~ 179 (231)
.++.+||..|||. |..+..+++ .|. .+++++.+++..+.+++... + .++.. ++.... ....+|+++
T Consensus 164 ~~~~~VLI~g~g~vG~~~~~lak~~G~~~v~~~~~s~~~~~~~~~~g~-----~--~vi~~~~~~~~~~~~~~~~vd~vl 236 (339)
T cd08232 164 LAGKRVLVTGAGPIGALVVAAARRAGAAEIVATDLADAPLAVARAMGA-----D--ETVNLARDPLAAYAADKGDFDVVF 236 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHcCC-----C--EEEcCCchhhhhhhccCCCccEEE
Confidence 3667888888876 667777776 777 79999999888876655321 1 11211 111111 123599998
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
..... ...++...+.|+++|+++....
T Consensus 237 d~~g~--------~~~~~~~~~~L~~~G~~v~~g~ 263 (339)
T cd08232 237 EASGA--------PAALASALRVVRPGGTVVQVGM 263 (339)
T ss_pred ECCCC--------HHHHHHHHHHHhcCCEEEEEec
Confidence 54321 1246778899999999887654
No 350
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=92.59 E-value=0.5 Score=36.04 Aligned_cols=98 Identities=18% Similarity=0.140 Sum_probs=60.5
Q ss_pred cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc-------CC-C--------CCceEEEEccCCCCCCC
Q 026903 111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSS-------LP-N--------AKFVSFLKADFFTWCPT 172 (231)
Q Consensus 111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~-------~~-~--------~~~i~~~~~d~~~~~~~ 172 (231)
+|--+|+|. | ..+..++..|.+|+.+|.+++.++.+++.+.. .+ . ..++. ...|+.+..
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~i~-~~~dl~~~~-- 77 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVTLYDRSPEALERARKRIERLLDRLVRKGRLSQEEADAALARIS-FTTDLEEAV-- 77 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEEEE-SSHHHHHHHHHHHHHHHHHHHHTTTTTHHHHHHHHHTEE-EESSGGGGC--
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEEEEECChHHHHhhhhHHHHHHhhhhhhccchhhhhhhhhhhcc-cccCHHHHh--
Confidence 366788886 4 45555666899999999999999888775543 11 1 12343 233443332
Q ss_pred CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
..|+|+-. +.+.+ +.+.++++++.+.+.|+.+|...+-+
T Consensus 78 -~adlViEa-i~E~l--~~K~~~~~~l~~~~~~~~ilasnTSs 116 (180)
T PF02737_consen 78 -DADLVIEA-IPEDL--ELKQELFAELDEICPPDTILASNTSS 116 (180)
T ss_dssp -TESEEEE--S-SSH--HHHHHHHHHHHCCS-TTSEEEE--SS
T ss_pred -hhheehhh-ccccH--HHHHHHHHHHHHHhCCCceEEecCCC
Confidence 57888732 22333 67789999999999999988765543
No 351
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=92.56 E-value=0.58 Score=39.44 Aligned_cols=98 Identities=15% Similarity=0.200 Sum_probs=58.9
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC----CCCCCcee-
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD- 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~----~~~~~~fD- 176 (231)
.++.+||-.|||. |..+..+++ .|.+++++|.+++.++.+++.-... -+..... ++.+ ......+|
T Consensus 165 ~~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~~~~~~~~~~~~~Ga~~----~i~~~~~~~~~~~~~~~~~t~~~g~d~ 240 (349)
T TIGR03201 165 KKGDLVIVIGAGGVGGYMVQTAKAMGAAVVAIDIDPEKLEMMKGFGADL----TLNPKDKSAREVKKLIKAFAKARGLRS 240 (349)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHHhCCce----EecCccccHHHHHHHHHhhcccCCCCC
Confidence 4568999999976 777777776 7778999999999888886532110 0111111 1111 11122354
Q ss_pred ---EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 177 ---LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 177 ---~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+|+.... . ...+....++|++||++++..+..
T Consensus 241 ~~d~v~d~~g-----~---~~~~~~~~~~l~~~G~iv~~G~~~ 275 (349)
T TIGR03201 241 TGWKIFECSG-----S---KPGQESALSLLSHGGTLVVVGYTM 275 (349)
T ss_pred CcCEEEECCC-----C---hHHHHHHHHHHhcCCeEEEECcCC
Confidence 5552111 1 234566788999999998877643
No 352
>cd08261 Zn_ADH7 Alcohol dehydrogenases of the MDR family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P)-binding Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase,
Probab=92.37 E-value=0.24 Score=41.40 Aligned_cols=96 Identities=21% Similarity=0.243 Sum_probs=59.8
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCce-EEEEccCCC----CCCCCceeEEE
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFV-SFLKADFFT----WCPTELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i-~~~~~d~~~----~~~~~~fD~i~ 179 (231)
.++.+||..|+|. |..+..+++ .|.+++++..+++..+.+++... +.+ .....++.+ ......+|+++
T Consensus 158 ~~g~~vLI~g~g~vG~~a~~lA~~~g~~v~~~~~s~~~~~~~~~~g~-----~~v~~~~~~~~~~~l~~~~~~~~vd~vl 232 (337)
T cd08261 158 TAGDTVLVVGAGPIGLGVIQVAKARGARVIVVDIDDERLEFARELGA-----DDTINVGDEDVAARLRELTDGEGADVVI 232 (337)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEECCCHHHHHHHHHhCC-----CEEecCcccCHHHHHHHHhCCCCCCEEE
Confidence 3457899988764 677777777 78899999888888887754321 111 111111111 22334689998
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
....- ...+..+.+.|+++|.++.....
T Consensus 233 d~~g~--------~~~~~~~~~~l~~~G~~i~~g~~ 260 (337)
T cd08261 233 DATGN--------PASMEEAVELVAHGGRVVLVGLS 260 (337)
T ss_pred ECCCC--------HHHHHHHHHHHhcCCEEEEEcCC
Confidence 54211 13467788899999998765433
No 353
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=92.21 E-value=1.3 Score=36.51 Aligned_cols=98 Identities=15% Similarity=0.041 Sum_probs=55.3
Q ss_pred cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccC
Q 026903 111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (231)
Q Consensus 111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~ 188 (231)
+|+-+|+|. | .++..|++.|.+|+.++.+++.++..++...... .........-..+......+|+|+..--
T Consensus 2 ~I~IiG~G~~G~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~d~vila~k----- 75 (304)
T PRK06522 2 KIAILGAGAIGGLFGAALAQAGHDVTLVARRGAHLDALNENGLRLE-DGEITVPVLAADDPAELGPQDLVILAVK----- 75 (304)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCeEEEEECChHHHHHHHHcCCccc-CCceeecccCCCChhHcCCCCEEEEecc-----
Confidence 688899986 3 4555566688899999998777766654321100 0111100000111111256898884322
Q ss_pred hHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 189 PEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
..+...+++.+...+.++..++...-
T Consensus 76 ~~~~~~~~~~l~~~l~~~~~iv~~~n 101 (304)
T PRK06522 76 AYQLPAALPSLAPLLGPDTPVLFLQN 101 (304)
T ss_pred cccHHHHHHHHhhhcCCCCEEEEecC
Confidence 22346677888888888777665443
No 354
>PRK08324 short chain dehydrogenase; Validated
Probab=92.20 E-value=1.9 Score=40.04 Aligned_cols=73 Identities=16% Similarity=0.059 Sum_probs=49.3
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-----CC
Q 026903 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-----TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----~~ 173 (231)
++++||-.|++.| ..+..+++.|.+|+.+|.++...+.+.+.+... .++.++.+|+.+.. . -+
T Consensus 421 ~gk~vLVTGasggIG~~la~~L~~~Ga~Vvl~~r~~~~~~~~~~~l~~~---~~v~~v~~Dvtd~~~v~~~~~~~~~~~g 497 (681)
T PRK08324 421 AGKVALVTGAAGGIGKATAKRLAAEGACVVLADLDEEAAEAAAAELGGP---DRALGVACDVTDEAAVQAAFEEAALAFG 497 (681)
T ss_pred CCCEEEEecCCCHHHHHHHHHHHHCcCEEEEEeCCHHHHHHHHHHHhcc---CcEEEEEecCCCHHHHHHHHHHHHHHcC
Confidence 4578888886443 233444558899999999988777665544322 35888999988721 1 13
Q ss_pred ceeEEEeCCc
Q 026903 174 LFDLIFDYTF 183 (231)
Q Consensus 174 ~fD~i~~~~~ 183 (231)
.+|+|+.+..
T Consensus 498 ~iDvvI~~AG 507 (681)
T PRK08324 498 GVDIVVSNAG 507 (681)
T ss_pred CCCEEEECCC
Confidence 6899987754
No 355
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=92.17 E-value=0.94 Score=37.06 Aligned_cols=84 Identities=17% Similarity=0.152 Sum_probs=53.8
Q ss_pred cEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccccC
Q 026903 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCAIE 188 (231)
Q Consensus 111 ~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~~~ 188 (231)
+|.-||+|. |.++..|.+.|.+|+++|.+++.++.+.+... +.....+. +. ....|+|+.. ++
T Consensus 2 ~I~IIG~G~mG~sla~~L~~~g~~V~~~d~~~~~~~~a~~~g~-------~~~~~~~~-~~--~~~aDlVila-----vp 66 (279)
T PRK07417 2 KIGIVGLGLIGGSLGLDLRSLGHTVYGVSRRESTCERAIERGL-------VDEASTDL-SL--LKDCDLVILA-----LP 66 (279)
T ss_pred eEEEEeecHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHCCC-------cccccCCH-hH--hcCCCEEEEc-----CC
Confidence 567788886 56667777788899999999988887765310 11111111 11 1357888743 34
Q ss_pred hHHHHHHHHHHHhhcCCCcEE
Q 026903 189 PEMRAAWAQKIKDFLKPDGEL 209 (231)
Q Consensus 189 ~~~~~~~l~~~~~~L~pgG~l 209 (231)
+....++++++...++++.++
T Consensus 67 ~~~~~~~~~~l~~~l~~~~ii 87 (279)
T PRK07417 67 IGLLLPPSEQLIPALPPEAIV 87 (279)
T ss_pred HHHHHHHHHHHHHhCCCCcEE
Confidence 455566788888888877544
No 356
>PRK07814 short chain dehydrogenase; Provisional
Probab=92.10 E-value=3.2 Score=33.31 Aligned_cols=75 Identities=17% Similarity=0.145 Sum_probs=49.6
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
.+++++|-.|++.| ..+..|++.|.+|++++.+++.++...+.....+ .++.++.+|+.+... -
T Consensus 8 ~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 85 (263)
T PRK07814 8 LDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAARTESQLDEVAEQIRAAG--RRAHVVAADLAHPEATAGLAGQAVEAF 85 (263)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45678998986543 2334455689999999999877665554443222 357888999888321 1
Q ss_pred CceeEEEeCCc
Q 026903 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~i~~~~~ 183 (231)
+.+|+|+....
T Consensus 86 ~~id~vi~~Ag 96 (263)
T PRK07814 86 GRLDIVVNNVG 96 (263)
T ss_pred CCCCEEEECCC
Confidence 36899987643
No 357
>PRK07109 short chain dehydrogenase; Provisional
Probab=91.93 E-value=3.3 Score=34.79 Aligned_cols=75 Identities=13% Similarity=0.046 Sum_probs=50.8
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
..+++||-.|++.| ..+..|++.|.+|+.++.+++.++...+.+...+ .++.++.+|+.+... -
T Consensus 6 l~~k~vlITGas~gIG~~la~~la~~G~~Vvl~~R~~~~l~~~~~~l~~~g--~~~~~v~~Dv~d~~~v~~~~~~~~~~~ 83 (334)
T PRK07109 6 IGRQVVVITGASAGVGRATARAFARRGAKVVLLARGEEGLEALAAEIRAAG--GEALAVVADVADAEAVQAAADRAEEEL 83 (334)
T ss_pred CCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHHcC--CcEEEEEecCCCHHHHHHHHHHHHHHC
Confidence 34568888887654 2334455689999999999887776655544332 357889999888211 1
Q ss_pred CceeEEEeCCc
Q 026903 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~i~~~~~ 183 (231)
+.+|+++.+..
T Consensus 84 g~iD~lInnAg 94 (334)
T PRK07109 84 GPIDTWVNNAM 94 (334)
T ss_pred CCCCEEEECCC
Confidence 46899987654
No 358
>PRK07576 short chain dehydrogenase; Provisional
Probab=91.89 E-value=3.2 Score=33.37 Aligned_cols=74 Identities=15% Similarity=0.009 Sum_probs=47.1
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 172 (231)
++++++|-.|.+.| ..+..++..|.+|+.++.++..++...+.....+ .++.++.+|+.+.. ..
T Consensus 7 ~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~i~~~~~~~~~~~ 84 (264)
T PRK07576 7 FAGKNVVVVGGTSGINLGIAQAFARAGANVAVASRSQEKVDAAVAQLQQAG--PEGLGVSADVRDYAAVEAAFAQIADEF 84 (264)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEECCCCCHHHHHHHHHHHHHHc
Confidence 45678888886443 2334455589999999998876655544333221 34678889988721 01
Q ss_pred CceeEEEeCC
Q 026903 173 ELFDLIFDYT 182 (231)
Q Consensus 173 ~~fD~i~~~~ 182 (231)
+.+|+++++.
T Consensus 85 ~~iD~vi~~a 94 (264)
T PRK07576 85 GPIDVLVSGA 94 (264)
T ss_pred CCCCEEEECC
Confidence 3579998764
No 359
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=91.84 E-value=0.66 Score=40.12 Aligned_cols=90 Identities=13% Similarity=0.045 Sum_probs=56.3
Q ss_pred CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903 106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~ 183 (231)
...+++|+-+|+|. |......++ .|.+|+++|.++.....+... + ..+. ++.+.. ...|+|++...
T Consensus 192 ~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV~d~dp~r~~~A~~~----G----~~v~--~leeal--~~aDVVItaTG 259 (406)
T TIGR00936 192 LIAGKTVVVAGYGWCGKGIAMRARGMGARVIVTEVDPIRALEAAMD----G----FRVM--TMEEAA--KIGDIFITATG 259 (406)
T ss_pred CCCcCEEEEECCCHHHHHHHHHHhhCcCEEEEEeCChhhHHHHHhc----C----CEeC--CHHHHH--hcCCEEEECCC
Confidence 35678999999997 666666655 788999999988654333321 1 1111 222222 24688876322
Q ss_pred ccccChHHHHHHHH-HHHhhcCCCcEEEEEEcc
Q 026903 184 FCAIEPEMRAAWAQ-KIKDFLKPDGELITLMFP 215 (231)
Q Consensus 184 ~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~~ 215 (231)
- ..++. .....+|+|++++...+.
T Consensus 260 ~--------~~vI~~~~~~~mK~GailiN~G~~ 284 (406)
T TIGR00936 260 N--------KDVIRGEHFENMKDGAIVANIGHF 284 (406)
T ss_pred C--------HHHHHHHHHhcCCCCcEEEEECCC
Confidence 1 22343 477889999998876654
No 360
>cd08285 NADP_ADH NADP(H)-dependent alcohol dehydrogenases. This group is predominated by atypical alcohol dehydrogenases; they exist as tetramers and exhibit specificity for NADP(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Like other zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric ADHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains; however, they do not have and a structural zinc in a lobe of the catalytic domain. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.82 E-value=0.36 Score=40.57 Aligned_cols=96 Identities=17% Similarity=0.148 Sum_probs=58.2
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEE
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~ 179 (231)
.++.+||-.|+|. |..+..+++ .|. .++++|.+++..+.+++.-. ..-+.....+..+ ......+|+++
T Consensus 165 ~~g~~vlI~g~g~iG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g~----~~~v~~~~~~~~~~i~~~~~~~~~d~vl 240 (351)
T cd08285 165 KLGDTVAVFGIGPVGLMAVAGARLRGAGRIIAVGSRPNRVELAKEYGA----TDIVDYKNGDVVEQILKLTGGKGVDAVI 240 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC----ceEecCCCCCHHHHHHHHhCCCCCcEEE
Confidence 3457888888763 566666666 677 69999999988877775321 0001111111111 12234699998
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
....- ...+..+.++|+++|+++....
T Consensus 241 d~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 267 (351)
T cd08285 241 IAGGG--------QDTFEQALKVLKPGGTISNVNY 267 (351)
T ss_pred ECCCC--------HHHHHHHHHHhhcCCEEEEecc
Confidence 53221 1346788899999999886654
No 361
>cd05278 FDH_like Formaldehyde dehydrogenases. Formaldehyde dehydrogenase (FDH) is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. Formaldehyde dehydrogenase (aka ADH3) may be the ancestral form of alcohol dehydrogenase, which evolved to detoxify formaldehyde. This CD contains glutathione dependant FDH, glutathione independent FDH, and related alcohol dehydrogenases. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. Unlike typical FDH, Pseudomonas putida aldehyde-dismutating FDH (PFDH) is glutathione-independent. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typicall
Probab=91.78 E-value=0.33 Score=40.62 Aligned_cols=95 Identities=16% Similarity=0.222 Sum_probs=56.9
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEEe
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~~ 180 (231)
++.+||..|+|. |..+..+++ .|. .+++++.+++..+.+++.-.. .-+.....++.+ ......+|+++.
T Consensus 167 ~~~~VlI~g~g~vg~~~iqlak~~g~~~v~~~~~~~~~~~~~~~~g~~----~vi~~~~~~~~~~i~~~~~~~~~d~vld 242 (347)
T cd05278 167 PGSTVAVIGAGPVGLCAVAGARLLGAARIIAVDSNPERLDLAKEAGAT----DIINPKNGDIVEQILELTGGRGVDCVIE 242 (347)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEeCCHHHHHHHHHhCCc----EEEcCCcchHHHHHHHHcCCCCCcEEEE
Confidence 457888877653 667777776 674 788998888777776653210 001111111111 223356999985
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.... ...+....+.|+++|.++....
T Consensus 243 ~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 268 (347)
T cd05278 243 AVGF--------EETFEQAVKVVRPGGTIANVGV 268 (347)
T ss_pred ccCC--------HHHHHHHHHHhhcCCEEEEEcC
Confidence 3221 1256778899999999876653
No 362
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=91.74 E-value=0.6 Score=40.62 Aligned_cols=91 Identities=15% Similarity=0.030 Sum_probs=56.7
Q ss_pred CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903 106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~ 183 (231)
.+.+++|+-+|+|. |......++ .|.+|+.+|.++.....+... + .++ .++.+.. ..+|+|+....
T Consensus 209 ~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~ViV~d~dp~ra~~A~~~----G----~~v--~~l~eal--~~aDVVI~aTG 276 (425)
T PRK05476 209 LIAGKVVVVAGYGDVGKGCAQRLRGLGARVIVTEVDPICALQAAMD----G----FRV--MTMEEAA--ELGDIFVTATG 276 (425)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCCchhhHHHHhc----C----CEe--cCHHHHH--hCCCEEEECCC
Confidence 34678999999986 555544444 788999999998755444321 1 111 1222222 25899986421
Q ss_pred ccccChHHHHHHHH-HHHhhcCCCcEEEEEEccC
Q 026903 184 FCAIEPEMRAAWAQ-KIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 184 ~~~~~~~~~~~~l~-~~~~~L~pgG~l~~~~~~~ 216 (231)
- ..++. .....+|+|++++...+..
T Consensus 277 ~--------~~vI~~~~~~~mK~GailiNvG~~d 302 (425)
T PRK05476 277 N--------KDVITAEHMEAMKDGAILANIGHFD 302 (425)
T ss_pred C--------HHHHHHHHHhcCCCCCEEEEcCCCC
Confidence 1 12343 6778899999988766543
No 363
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=91.66 E-value=0.66 Score=38.54 Aligned_cols=92 Identities=16% Similarity=0.097 Sum_probs=59.3
Q ss_pred CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc----cCCC---CCCCCcee
Q 026903 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFT---WCPTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~----d~~~---~~~~~~fD 176 (231)
.++.+||-.|+ |.|..+..+++ .|.++++++.+++..+.+++.- . + .++.. +..+ ......+|
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s~~~~~~~~~lG-a----~--~vi~~~~~~~~~~~~~~~~~~gvd 209 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGSDEKVAYLKKLG-F----D--VAFNYKTVKSLEETLKKASPDGYD 209 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC-C----C--EEEeccccccHHHHHHHhCCCCeE
Confidence 35578988884 45788888887 7889999999998888886522 1 1 11211 1111 11124699
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
+|+.... . ..+....++|+++|+++....
T Consensus 210 vv~d~~G-----~----~~~~~~~~~l~~~G~iv~~G~ 238 (325)
T TIGR02825 210 CYFDNVG-----G----EFSNTVIGQMKKFGRIAICGA 238 (325)
T ss_pred EEEECCC-----H----HHHHHHHHHhCcCcEEEEecc
Confidence 9984321 1 235678899999999987654
No 364
>PRK08267 short chain dehydrogenase; Provisional
Probab=91.62 E-value=3.3 Score=33.01 Aligned_cols=71 Identities=13% Similarity=0.118 Sum_probs=48.1
Q ss_pred CcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C------CCc
Q 026903 110 GRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P------TEL 174 (231)
Q Consensus 110 ~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~------~~~ 174 (231)
+++|-.|++.| .++..+++.|.+|+.++.+++.++...+... ..++.++.+|+.+.. . .+.
T Consensus 2 k~vlItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~----~~~~~~~~~D~~~~~~v~~~~~~~~~~~~~~ 77 (260)
T PRK08267 2 KSIFITGAASGIGRATALLFAAEGWRVGAYDINEAGLAALAAELG----AGNAWTGALDVTDRAAWDAALADFAAATGGR 77 (260)
T ss_pred cEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHhc----CCceEEEEecCCCHHHHHHHHHHHHHHcCCC
Confidence 36788887654 2344555689999999999887766655432 135889999998721 0 246
Q ss_pred eeEEEeCCcc
Q 026903 175 FDLIFDYTFF 184 (231)
Q Consensus 175 fD~i~~~~~~ 184 (231)
+|+++.+...
T Consensus 78 id~vi~~ag~ 87 (260)
T PRK08267 78 LDVLFNNAGI 87 (260)
T ss_pred CCEEEECCCC
Confidence 7999876543
No 365
>PRK08265 short chain dehydrogenase; Provisional
Probab=91.57 E-value=4.6 Score=32.33 Aligned_cols=71 Identities=14% Similarity=0.066 Sum_probs=47.1
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-----CC
Q 026903 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-----TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----~~ 173 (231)
.++++|-.|++.| ..+..|++.|.+|+.++.+++..+...+.. ..++.++.+|+.+.. . -+
T Consensus 5 ~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~~~~~~~~~~~~~g 79 (261)
T PRK08265 5 AGKVAIVTGGATLIGAAVARALVAAGARVAIVDIDADNGAAVAASL-----GERARFIATDITDDAAIERAVATVVARFG 79 (261)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHh-----CCeeEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4568888886554 334455568999999999877555444332 135788999998731 0 13
Q ss_pred ceeEEEeCCc
Q 026903 174 LFDLIFDYTF 183 (231)
Q Consensus 174 ~fD~i~~~~~ 183 (231)
..|+++.+..
T Consensus 80 ~id~lv~~ag 89 (261)
T PRK08265 80 RVDILVNLAC 89 (261)
T ss_pred CCCEEEECCC
Confidence 6898887654
No 366
>PRK06701 short chain dehydrogenase; Provisional
Probab=91.54 E-value=2.8 Score=34.31 Aligned_cols=106 Identities=14% Similarity=0.096 Sum_probs=61.0
Q ss_pred CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChH-HHHHHHHHhccCCCCCceEEEEccCCCCC------C----
Q 026903 106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDI-AIKKAEELSSSLPNAKFVSFLKADFFTWC------P---- 171 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~-~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~---- 171 (231)
..+++++|-.|++.| .++..+++.|.+|+.++.++. ..+...+.....+ .++.++.+|+.+.. .
T Consensus 43 ~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~~r~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~i~~ 120 (290)
T PRK06701 43 KLKGKVALITGGDSGIGRAVAVLFAKEGADIAIVYLDEHEDANETKQRVEKEG--VKCLLIPGDVSDEAFCKDAVEETVR 120 (290)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeCCcchHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 345578999987664 334555668999999987642 2333333332222 35788999988721 0
Q ss_pred -CCceeEEEeCCcccc-------cChH-----------HHHHHHHHHHhhcCCCcEEEEEE
Q 026903 172 -TELFDLIFDYTFFCA-------IEPE-----------MRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 172 -~~~fD~i~~~~~~~~-------~~~~-----------~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
-..+|+++.+..... .+.+ ....+++.+...++++|.++++.
T Consensus 121 ~~~~iD~lI~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~~~~~l~~a~~~~~~~~g~iV~is 181 (290)
T PRK06701 121 ELGRLDILVNNAAFQYPQQSLEDITAEQLDKTFKTNIYSYFHMTKAALPHLKQGSAIINTG 181 (290)
T ss_pred HcCCCCEEEECCcccCCCCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHHhhCCeEEEEe
Confidence 135788886644321 1111 11345556666677777766544
No 367
>cd08234 threonine_DH_like L-threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine, via NAD(H)-dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.45 E-value=1.6 Score=36.17 Aligned_cols=95 Identities=15% Similarity=0.143 Sum_probs=59.2
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-----CCCCCceeEE
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-----WCPTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-----~~~~~~fD~i 178 (231)
.++.+||..|+|. |..+..+++ .|.+ ++.++.+++..+.+++... + .++..+-.+ ......+|++
T Consensus 158 ~~g~~vlI~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~-----~--~~~~~~~~~~~~~~~~~~~~vd~v 230 (334)
T cd08234 158 KPGDSVLVFGAGPIGLLLAQLLKLNGASRVTVAEPNEEKLELAKKLGA-----T--ETVDPSREDPEAQKEDNPYGFDVV 230 (334)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCC-----e--EEecCCCCCHHHHHHhcCCCCcEE
Confidence 3557888888753 666666666 6766 8999999988887754321 0 122221111 1123569999
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+....- ...+....++|+++|.++......
T Consensus 231 ~~~~~~--------~~~~~~~~~~l~~~G~~v~~g~~~ 260 (334)
T cd08234 231 IEATGV--------PKTLEQAIEYARRGGTVLVFGVYA 260 (334)
T ss_pred EECCCC--------hHHHHHHHHHHhcCCEEEEEecCC
Confidence 854221 134677789999999988766543
No 368
>cd08233 butanediol_DH_like (2R,3R)-2,3-butanediol dehydrogenase. (2R,3R)-2,3-butanediol dehydrogenase, a zinc-dependent medium chain alcohol dehydrogenase, catalyzes the NAD(+)-dependent oxidation of (2R,3R)-2,3-butanediol and meso-butanediol to acetoin. BDH functions as a homodimer. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit.
Probab=91.44 E-value=0.36 Score=40.57 Aligned_cols=97 Identities=23% Similarity=0.229 Sum_probs=57.9
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEE
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~ 179 (231)
.++.+||-.|+|. |..+..+++ .|. .|++++.+++..+.+++.-.. .-+.....++.+ ......+|+|+
T Consensus 171 ~~g~~vlI~g~g~vG~~a~q~a~~~G~~~v~~~~~~~~~~~~~~~~ga~----~~i~~~~~~~~~~l~~~~~~~~~d~vi 246 (351)
T cd08233 171 KPGDTALVLGAGPIGLLTILALKAAGASKIIVSEPSEARRELAEELGAT----IVLDPTEVDVVAEVRKLTGGGGVDVSF 246 (351)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEECCCHHHHHHHHHhCCC----EEECCCccCHHHHHHHHhCCCCCCEEE
Confidence 3457888887653 555555565 777 899999999888887653210 001111111111 12233599998
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
..... ...+..+.+.|+++|.++.....
T Consensus 247 d~~g~--------~~~~~~~~~~l~~~G~~v~~g~~ 274 (351)
T cd08233 247 DCAGV--------QATLDTAIDALRPRGTAVNVAIW 274 (351)
T ss_pred ECCCC--------HHHHHHHHHhccCCCEEEEEccC
Confidence 53321 12467788899999998876653
No 369
>cd08236 sugar_DH NAD(P)-dependent sugar dehydrogenases. This group contains proteins identified as sorbitol dehydrogenases and other sugar dehydrogenases of the medium-chain dehydrogenase/reductase family (MDR), which includes zinc-dependent alcohol dehydrogenase and related proteins. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Related proteins include threonine dehydrogenase, formaldehyde dehydrogenase, and butanediol dehydrogenase. The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast
Probab=91.42 E-value=0.44 Score=39.82 Aligned_cols=94 Identities=18% Similarity=0.238 Sum_probs=58.0
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEcc------CCCCCCCCceeE
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD------FFTWCPTELFDL 177 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d------~~~~~~~~~fD~ 177 (231)
.++.+||..|+|. |..+..+++ .|.+ +++++.+++..+.+++.. . ..++... +........+|+
T Consensus 158 ~~~~~vlI~g~g~~g~~~~~lA~~~G~~~v~~~~~~~~~~~~l~~~g-~------~~~~~~~~~~~~~~~~~~~~~~~d~ 230 (343)
T cd08236 158 TLGDTVVVIGAGTIGLLAIQWLKILGAKRVIAVDIDDEKLAVARELG-A------DDTINPKEEDVEKVRELTEGRGADL 230 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHcC-C------CEEecCccccHHHHHHHhCCCCCCE
Confidence 3557888888765 666666666 7776 999998888777765421 1 1111111 111222335999
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
++.... . ...+..+.++|+++|.++.....
T Consensus 231 vld~~g-----~---~~~~~~~~~~l~~~G~~v~~g~~ 260 (343)
T cd08236 231 VIEAAG-----S---PATIEQALALARPGGKVVLVGIP 260 (343)
T ss_pred EEECCC-----C---HHHHHHHHHHhhcCCEEEEEccc
Confidence 985421 1 12467788999999998776543
No 370
>PRK06139 short chain dehydrogenase; Provisional
Probab=91.41 E-value=3.4 Score=34.66 Aligned_cols=75 Identities=16% Similarity=0.072 Sum_probs=51.4
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 172 (231)
..+++||-.|++.| .++..+++.|.+|+.++.+++.++...+.+...+ .++.++.+|+.+.. ..
T Consensus 5 l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~R~~~~l~~~~~~~~~~g--~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 82 (330)
T PRK06139 5 LHGAVVVITGASSGIGQATAEAFARRGARLVLAARDEEALQAVAEECRALG--AEVLVVPTDVTDADQVKALATQAASFG 82 (330)
T ss_pred CCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHHHhcC--CcEEEEEeeCCCHHHHHHHHHHHHHhc
Confidence 34578888888654 2344455689999999999888776665554332 35778888988721 01
Q ss_pred CceeEEEeCCc
Q 026903 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~i~~~~~ 183 (231)
+.+|+++.+..
T Consensus 83 g~iD~lVnnAG 93 (330)
T PRK06139 83 GRIDVWVNNVG 93 (330)
T ss_pred CCCCEEEECCC
Confidence 46899998754
No 371
>cd05285 sorbitol_DH Sorbitol dehydrogenase. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose. Sorbitol dehydrogenase is tetrameric and has a single catalytic zinc per subunit. Aldose reductase catalyzes the NADP(H)-dependent conversion of glucose to sorbital, and SDH uses NAD(H) in the conversion of sorbitol to fructose. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=91.33 E-value=0.54 Score=39.37 Aligned_cols=93 Identities=22% Similarity=0.204 Sum_probs=58.3
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEc---c-------CCCCCCCC
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---D-------FFTWCPTE 173 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d-------~~~~~~~~ 173 (231)
.++.+||-.|+|. |..+..+++ .|.+ ++.++.+++..+.+++. .. + .++.. + +.......
T Consensus 161 ~~g~~vlI~g~g~vG~~a~~lak~~G~~~v~~~~~~~~~~~~~~~~-g~----~--~vi~~~~~~~~~~~~~~~~~~~~~ 233 (343)
T cd05285 161 RPGDTVLVFGAGPIGLLTAAVAKAFGATKVVVTDIDPSRLEFAKEL-GA----T--HTVNVRTEDTPESAEKIAELLGGK 233 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHc-CC----c--EEeccccccchhHHHHHHHHhCCC
Confidence 4557888877765 666777776 7776 89999888877777552 11 1 11111 1 11122334
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.+|+|+..... ...+....++|+++|.++....
T Consensus 234 ~~d~vld~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 266 (343)
T cd05285 234 GPDVVIECTGA--------ESCIQTAIYATRPGGTVVLVGM 266 (343)
T ss_pred CCCEEEECCCC--------HHHHHHHHHHhhcCCEEEEEcc
Confidence 69999854221 1246778899999999876654
No 372
>PRK13699 putative methylase; Provisional
Probab=91.33 E-value=0.44 Score=37.83 Aligned_cols=53 Identities=17% Similarity=0.294 Sum_probs=37.1
Q ss_pred EEEEccCCC---CCCCCceeEEEeCCcccc---------cC----hHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 160 SFLKADFFT---WCPTELFDLIFDYTFFCA---------IE----PEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 160 ~~~~~d~~~---~~~~~~fD~i~~~~~~~~---------~~----~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
+++++|..+ ..+++++|+|+....+.- +. .+-...++.++.++|||||.+++.
T Consensus 3 ~l~~gD~le~l~~lpd~SVDLIiTDPPY~i~~~~~~~~~~~~~~~~ew~~~~l~E~~RVLKpgg~l~if 71 (227)
T PRK13699 3 RFILGNCIDVMARFPDNAVDFILTDPPYLVGFRDRQGRTIAGDKTDEWLQPACNEMYRVLKKDALMVSF 71 (227)
T ss_pred eEEechHHHHHHhCCccccceEEeCCCcccccccCCCcccccccHHHHHHHHHHHHHHHcCCCCEEEEE
Confidence 567788776 456788999998754420 00 122357889999999999988763
No 373
>cd05281 TDH Threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)- dependent oxidation. THD is a member of the zinc-requiring, medium chain NAD(H)-dependent alcohol dehydrogenase family (MDR). MDRs have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria) and have 2 tightly bound zinc atoms per subunit. Sorbitol and aldose reductase are NAD(+) binding proteins of the polyol pathway, which interconverts glucose and fructose.
Probab=91.28 E-value=0.61 Score=39.04 Aligned_cols=96 Identities=16% Similarity=0.254 Sum_probs=56.0
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC---CCCCCCCceeEEEe
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF---FTWCPTELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~---~~~~~~~~fD~i~~ 180 (231)
.++.+||-.|+|. |..+..+++ .|. ++++++-+++..+.+++.-... -+.....++ ........+|+|+.
T Consensus 162 ~~g~~vlV~g~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~~----~~~~~~~~~~~~~~~~~~~~vd~vld 237 (341)
T cd05281 162 VSGKSVLITGCGPIGLMAIAVAKAAGASLVIASDPNPYRLELAKKMGADV----VINPREEDVVEVKSVTDGTGVDVVLE 237 (341)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCcce----eeCcccccHHHHHHHcCCCCCCEEEE
Confidence 3556777777654 666666666 677 7888887777776666532110 011111111 11233457899985
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
...- ...+..+.++|+++|.++....
T Consensus 238 ~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 263 (341)
T cd05281 238 MSGN--------PKAIEQGLKALTPGGRVSILGL 263 (341)
T ss_pred CCCC--------HHHHHHHHHHhccCCEEEEEcc
Confidence 3321 1235677889999999876543
No 374
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=91.26 E-value=1.1 Score=37.76 Aligned_cols=94 Identities=18% Similarity=0.097 Sum_probs=61.1
Q ss_pred CCCCcEEEecC-C-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc----cCCC---CCCCCcee
Q 026903 107 LPKGRALVPGC-G-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFT---WCPTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGc-G-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~----d~~~---~~~~~~fD 176 (231)
.++.+||-.|+ | .|..+..+++ .|.+|++++.+++..+.+++.+.. + .++.. ++.+ ......+|
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~~~~k~~~~~~~lGa----~--~vi~~~~~~~~~~~i~~~~~~gvD 230 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAGSSQKVDLLKNKLGF----D--EAFNYKEEPDLDAALKRYFPEGID 230 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHhcCC----C--EEEECCCcccHHHHHHHHCCCCcE
Confidence 45679999997 3 5788888887 788999999999888777643321 1 12211 1111 01123689
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
+|+.... ...+....++|+++|.++++...
T Consensus 231 ~v~d~vG---------~~~~~~~~~~l~~~G~iv~~G~~ 260 (348)
T PLN03154 231 IYFDNVG---------GDMLDAALLNMKIHGRIAVCGMV 260 (348)
T ss_pred EEEECCC---------HHHHHHHHHHhccCCEEEEECcc
Confidence 9984322 12467788999999999876643
No 375
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=91.13 E-value=5.1 Score=32.09 Aligned_cols=104 Identities=21% Similarity=0.151 Sum_probs=60.8
Q ss_pred CCCCcEEEecCCCc-h----HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026903 107 LPKGRALVPGCGTG-Y----DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (231)
Q Consensus 107 ~~~~~vLDiGcG~G-~----~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------- 170 (231)
..++.+|-.|+++| . .+..|++.|.+|+.++.++...+...+.....+ .+.++.+|+.+..
T Consensus 8 ~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~~---~~~~~~~D~~~~~~v~~~~~~~~~ 84 (258)
T PRK07533 8 LAGKRGLVVGIANEQSIAWGCARAFRALGAELAVTYLNDKARPYVEPLAEELD---APIFLPLDVREPGQLEAVFARIAE 84 (258)
T ss_pred cCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEEEEeCChhhHHHHHHHHHhhc---cceEEecCcCCHHHHHHHHHHHHH
Confidence 45678999998752 3 344555689999999988654333333222211 2457788888721
Q ss_pred CCCceeEEEeCCcccc----------cChHHHH-----------HHHHHHHhhcCCCcEEEEEE
Q 026903 171 PTELFDLIFDYTFFCA----------IEPEMRA-----------AWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 171 ~~~~fD~i~~~~~~~~----------~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 213 (231)
.-+..|+++.+..+.. .+.++.. .+.+.+...|+.+|.++...
T Consensus 85 ~~g~ld~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~~~~~~~p~m~~~g~Ii~is 148 (258)
T PRK07533 85 EWGRLDFLLHSIAFAPKEDLHGRVVDCSREGFALAMDVSCHSFIRMARLAEPLMTNGGSLLTMS 148 (258)
T ss_pred HcCCCCEEEEcCccCCcccccCCcccCCHHHHHHHHhhhhHHHHHHHHHHHHHhccCCEEEEEe
Confidence 1146899998754321 1222221 23455666777788776544
No 376
>PRK05872 short chain dehydrogenase; Provisional
Probab=91.11 E-value=4.6 Score=33.11 Aligned_cols=75 Identities=11% Similarity=0.050 Sum_probs=49.9
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 172 (231)
+.++++|-.|++.| ..+..+++.|.+|+.++.+++.++...+.... ...+..+.+|+.+.. .-
T Consensus 7 l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~~r~~~~l~~~~~~l~~---~~~~~~~~~Dv~d~~~v~~~~~~~~~~~ 83 (296)
T PRK05872 7 LAGKVVVVTGAARGIGAELARRLHARGAKLALVDLEEAELAALAAELGG---DDRVLTVVADVTDLAAMQAAAEEAVERF 83 (296)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhcC---CCcEEEEEecCCCHHHHHHHHHHHHHHc
Confidence 45678898887665 33445556899999999998877665554432 124566678888721 01
Q ss_pred CceeEEEeCCcc
Q 026903 173 ELFDLIFDYTFF 184 (231)
Q Consensus 173 ~~fD~i~~~~~~ 184 (231)
+.+|+++.+...
T Consensus 84 g~id~vI~nAG~ 95 (296)
T PRK05872 84 GGIDVVVANAGI 95 (296)
T ss_pred CCCCEEEECCCc
Confidence 468999987654
No 377
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=91.09 E-value=5 Score=31.60 Aligned_cols=75 Identities=11% Similarity=0.030 Sum_probs=48.1
Q ss_pred CCCCcEEEecCCCc--h-HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903 107 LPKGRALVPGCGTG--Y-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G--~-~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
++++++|-.|++.| . .+..+++.|.+|+.++.++..++.+.+..... ..++.++.+|+.+... .
T Consensus 3 ~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~r~~~~~~~~~~~~~~~--~~~~~~~~~D~~~~~~~~~~~~~~~~~~ 80 (253)
T PRK08217 3 LKDKVIVITGGAQGLGRAMAEYLAQKGAKLALIDLNQEKLEEAVAECGAL--GTEVRGYAANVTDEEDVEATFAQIAEDF 80 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhc--CCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 34578998887443 2 22334458889999999987666555444332 2357888999876210 1
Q ss_pred CceeEEEeCCc
Q 026903 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~i~~~~~ 183 (231)
+.+|.|+.+..
T Consensus 81 ~~id~vi~~ag 91 (253)
T PRK08217 81 GQLNGLINNAG 91 (253)
T ss_pred CCCCEEEECCC
Confidence 36899987644
No 378
>PRK05875 short chain dehydrogenase; Provisional
Probab=91.07 E-value=4.6 Score=32.53 Aligned_cols=77 Identities=17% Similarity=0.081 Sum_probs=48.1
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
.+++++|-.|++.| ..+..|++.|.+|++++.+++..+...+.........++.++.+|+.+... -
T Consensus 5 ~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (276)
T PRK05875 5 FQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVGRNPDKLAAAAEEIEALKGAGAVRYEPADVTDEDQVARAVDAATAWH 84 (276)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhccCCCceEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 34578999986543 223344458899999998877655444433222112368889999987321 1
Q ss_pred CceeEEEeCCc
Q 026903 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~i~~~~~ 183 (231)
+..|+++.+..
T Consensus 85 ~~~d~li~~ag 95 (276)
T PRK05875 85 GRLHGVVHCAG 95 (276)
T ss_pred CCCCEEEECCC
Confidence 36799887653
No 379
>COG0287 TyrA Prephenate dehydrogenase [Amino acid transport and metabolism]
Probab=91.00 E-value=1.2 Score=36.62 Aligned_cols=87 Identities=18% Similarity=0.076 Sum_probs=53.5
Q ss_pred CcEEEecCCC--chHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903 110 GRALVPGCGT--GYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~ 185 (231)
.+|+-+|.|. |.+++.+.+.|. .+++.|.+...++.+.+.- +.....+..........|+|+..
T Consensus 4 ~~v~IvG~GliG~s~a~~l~~~g~~v~i~g~d~~~~~~~~a~~lg--------v~d~~~~~~~~~~~~~aD~Viva---- 71 (279)
T COG0287 4 MKVGIVGLGLMGGSLARALKEAGLVVRIIGRDRSAATLKAALELG--------VIDELTVAGLAEAAAEADLVIVA---- 71 (279)
T ss_pred cEEEEECCchHHHHHHHHHHHcCCeEEEEeecCcHHHHHHHhhcC--------cccccccchhhhhcccCCEEEEe----
Confidence 5788888885 566777777777 4688888888777776432 11111111101122457888843
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEE
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGEL 209 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l 209 (231)
+|......+++++...|++|..|
T Consensus 72 -vPi~~~~~~l~~l~~~l~~g~iv 94 (279)
T COG0287 72 -VPIEATEEVLKELAPHLKKGAIV 94 (279)
T ss_pred -ccHHHHHHHHHHhcccCCCCCEE
Confidence 33345567788888778887654
No 380
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=90.93 E-value=0.55 Score=42.88 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=62.2
Q ss_pred CcEEEecCCC-chHHH-HhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeCC
Q 026903 110 GRALVPGCGT-GYDVV-AMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT 182 (231)
Q Consensus 110 ~~vLDiGcG~-G~~~~-~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~~~ 182 (231)
.+|+-+|+|. |+... .|.+.+..++.+|.+++.++.+++. ....+.+|..+.. .-+..|.+++.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vv~~- 471 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRITVLERDISAVNLMRKY--------GYKVYYGDATQLELLRAAGAEKAEAIVIT- 471 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhC--------CCeEEEeeCCCHHHHHhcCCccCCEEEEE-
Confidence 5787777775 54433 3344788999999999999988752 2568899998821 12367777732
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
.+++.....+-...+.+.|+..+++-..+++
T Consensus 472 ----~~d~~~n~~i~~~~r~~~p~~~IiaRa~~~~ 502 (601)
T PRK03659 472 ----CNEPEDTMKIVELCQQHFPHLHILARARGRV 502 (601)
T ss_pred ----eCCHHHHHHHHHHHHHHCCCCeEEEEeCCHH
Confidence 2223333344455666788888887666543
No 381
>cd08255 2-desacetyl-2-hydroxyethyl_bacteriochlorophyllide_like 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide and other MDR family members. This subgroup of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family has members identified as 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase and alcohol dehydrogenases. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MD
Probab=90.82 E-value=1.9 Score=34.77 Aligned_cols=93 Identities=17% Similarity=0.140 Sum_probs=57.5
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~ 183 (231)
.++.+||-.|||. |..+..+++ .|.+ +++++.+++..+.+++.-.. +.+ .... ........+|+|+....
T Consensus 96 ~~g~~vlI~g~g~vg~~~i~~a~~~g~~~vi~~~~~~~~~~~~~~~g~~----~~~--~~~~-~~~~~~~~~d~vl~~~~ 168 (277)
T cd08255 96 RLGERVAVVGLGLVGLLAAQLAKAAGAREVVGVDPDAARRELAEALGPA----DPV--AADT-ADEIGGRGADVVIEASG 168 (277)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCcEEEECCCHHHHHHHHHcCCC----ccc--cccc-hhhhcCCCCCEEEEccC
Confidence 3557888888865 666666666 6777 99999999888876653201 111 1100 01112346899985322
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
. ...+....+.|+++|.++....
T Consensus 169 ~--------~~~~~~~~~~l~~~g~~~~~g~ 191 (277)
T cd08255 169 S--------PSALETALRLLRDRGRVVLVGW 191 (277)
T ss_pred C--------hHHHHHHHHHhcCCcEEEEEec
Confidence 1 1246778889999999876654
No 382
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=90.81 E-value=2.6 Score=38.77 Aligned_cols=95 Identities=13% Similarity=0.101 Sum_probs=63.5
Q ss_pred CCcEEEecCCC-chHHHH-hcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---CC--CCceeEEEeC
Q 026903 109 KGRALVPGCGT-GYDVVA-MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---CP--TELFDLIFDY 181 (231)
Q Consensus 109 ~~~vLDiGcG~-G~~~~~-l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~~--~~~fD~i~~~ 181 (231)
..+|+-+|||. |+.... |.+.|..++.+|.+++.++.+++. ....+.+|..+. .. -+..|.+++.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvvID~d~~~v~~~~~~--------g~~v~~GDat~~~~L~~agi~~A~~vvv~ 471 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTVLDHDPDHIETLRKF--------GMKVFYGDATRMDLLESAGAAKAEVLINA 471 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEEEECCHHHHHHHHhc--------CCeEEEEeCCCHHHHHhcCCCcCCEEEEE
Confidence 36899999986 665443 444788999999999999988752 256889999883 22 2367777732
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
.+++.....+-...+.+.|+-.+++-..+.
T Consensus 472 -----~~d~~~n~~i~~~ar~~~p~~~iiaRa~d~ 501 (621)
T PRK03562 472 -----IDDPQTSLQLVELVKEHFPHLQIIARARDV 501 (621)
T ss_pred -----eCCHHHHHHHHHHHHHhCCCCeEEEEECCH
Confidence 233333444555666667887776655443
No 383
>PRK07806 short chain dehydrogenase; Provisional
Probab=90.70 E-value=4.9 Score=31.67 Aligned_cols=103 Identities=15% Similarity=0.027 Sum_probs=57.7
Q ss_pred CCCcEEEecCCCc--h-HHHHhcCCCCeEEEEeCCh-HHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903 108 PKGRALVPGCGTG--Y-DVVAMASPERYVVGLEISD-IAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 108 ~~~~vLDiGcG~G--~-~~~~l~~~~~~v~~iD~s~-~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
.++++|-.|++.| . ++..+++.|.+|++++.+. ...+...+.+...+ .++.++.+|+.+... -
T Consensus 5 ~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r~~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 82 (248)
T PRK07806 5 PGKTALVTGSSRGIGADTAKILAGAGAHVVVNYRQKAPRANKVVAEIEAAG--GRASAVGADLTDEESVAALMDTAREEF 82 (248)
T ss_pred CCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeCCchHhHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHhC
Confidence 4578998887543 2 3344455888999887754 23333332222221 357888999888321 1
Q ss_pred CceeEEEeCCccccc---Ch--------HHHHHHHHHHHhhcCCCcEEEEE
Q 026903 173 ELFDLIFDYTFFCAI---EP--------EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 173 ~~fD~i~~~~~~~~~---~~--------~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
+..|+++.+...... ++ .....+++.+.+.++.+|.+++.
T Consensus 83 ~~~d~vi~~ag~~~~~~~~~~~~~~vn~~~~~~l~~~~~~~~~~~~~iv~i 133 (248)
T PRK07806 83 GGLDALVLNASGGMESGMDEDYAMRLNRDAQRNLARAALPLMPAGSRVVFV 133 (248)
T ss_pred CCCcEEEECCCCCCCCCCCcceeeEeeeHHHHHHHHHHHhhccCCceEEEE
Confidence 357887765432110 00 12245667777777666766544
No 384
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=90.65 E-value=6.4 Score=31.36 Aligned_cols=102 Identities=17% Similarity=0.111 Sum_probs=60.7
Q ss_pred CCCCcEEEecCCC--c---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026903 107 LPKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (231)
Q Consensus 107 ~~~~~vLDiGcG~--G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------- 170 (231)
..++.+|-.|.++ | ..+..|++.|.+|+.++.+++..+...+.. ..++.++.+|+.+..
T Consensus 5 l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~~r~~~~~~~~~~~~-----~~~~~~~~~Dl~~~~~v~~~~~~~~~ 79 (252)
T PRK06079 5 LSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYTYQNDRMKKSLQKLV-----DEEDLLVECDVASDESIERAFATIKE 79 (252)
T ss_pred cCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEecCchHHHHHHHhhc-----cCceeEEeCCCCCHHHHHHHHHHHHH
Confidence 3457889888763 3 334555668999999887754333333321 124778899998721
Q ss_pred CCCceeEEEeCCcccc----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903 171 PTELFDLIFDYTFFCA----------IEPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 171 ~~~~fD~i~~~~~~~~----------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~ 213 (231)
.-+.+|+++.+..+.. .+.++. ..+.+.+...|+.+|.++.+.
T Consensus 80 ~~g~iD~lv~nAg~~~~~~~~~~~~~~~~~~~~~~~~in~~~~~~l~~~~~~~~~~~g~Iv~is 143 (252)
T PRK06079 80 RVGKIDGIVHAIAYAKKEELGGNVTDTSRDGYALAQDISAYSLIAVAKYARPLLNPGASIVTLT 143 (252)
T ss_pred HhCCCCEEEEcccccccccccCCcccCCHHHHHHHhCcccHHHHHHHHHHHHhcccCceEEEEe
Confidence 1146899988754321 222222 234455666777788766544
No 385
>COG2933 Predicted SAM-dependent methyltransferase [General function prediction only]
Probab=90.60 E-value=1 Score=36.45 Aligned_cols=66 Identities=18% Similarity=0.163 Sum_probs=45.1
Q ss_pred CCCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-CCceeEEEe
Q 026903 107 LPKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-TELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-~~~fD~i~~ 180 (231)
.+++...|+|+-.|.++..|.+++..|+++|--+.+-..... ..++....|-+.+.| ....|-.+|
T Consensus 210 ~~~M~avDLGAcPGGWTyqLVkr~m~V~aVDng~ma~sL~dt--------g~v~h~r~DGfk~~P~r~~idWmVC 276 (358)
T COG2933 210 APGMWAVDLGACPGGWTYQLVKRNMRVYAVDNGPMAQSLMDT--------GQVTHLREDGFKFRPTRSNIDWMVC 276 (358)
T ss_pred cCCceeeecccCCCccchhhhhcceEEEEeccchhhhhhhcc--------cceeeeeccCcccccCCCCCceEEe
Confidence 456899999999999999999999999999986654332211 235555555555443 334555444
No 386
>PRK12939 short chain dehydrogenase; Provisional
Probab=90.58 E-value=3.5 Score=32.44 Aligned_cols=73 Identities=15% Similarity=-0.027 Sum_probs=47.2
Q ss_pred CCCcEEEecCCCchHHHH----hcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903 108 PKGRALVPGCGTGYDVVA----MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~----l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
+++++|-.|++ |..+.. +++.|.+++.++.+++.+....+.....+ .++.++.+|+.+... -
T Consensus 6 ~~~~vlItGa~-g~iG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 82 (250)
T PRK12939 6 AGKRALVTGAA-RGLGAAFAEALAEAGATVAFNDGLAAEARELAAALEAAG--GRAHAIAADLADPASVQRFFDAAAAAL 82 (250)
T ss_pred CCCEEEEeCCC-ChHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEccCCCHHHHHHHHHHHHHHc
Confidence 45788877764 444444 44588999999988876665544443221 358899999987221 1
Q ss_pred CceeEEEeCCc
Q 026903 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~i~~~~~ 183 (231)
+.+|+|+....
T Consensus 83 ~~id~vi~~ag 93 (250)
T PRK12939 83 GGLDGLVNNAG 93 (250)
T ss_pred CCCCEEEECCC
Confidence 46899887654
No 387
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=90.46 E-value=0.52 Score=40.09 Aligned_cols=97 Identities=15% Similarity=0.122 Sum_probs=59.5
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEE--ccCCC-C--CCCCceeEE
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLK--ADFFT-W--CPTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~--~d~~~-~--~~~~~fD~i 178 (231)
.++.+||-.|||. |..+..+++ .|. +|+++|.+++..+.+++.-... -+.... .++.+ . ...+.+|++
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~~~~~~~~~a~~~Ga~~----~i~~~~~~~~~~~~v~~~~~~g~d~v 259 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAIDINPAKFELAKKLGATD----CVNPNDYDKPIQEVIVEITDGGVDYS 259 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCCCe----EEcccccchhHHHHHHHHhCCCCCEE
Confidence 3567999999875 666777776 777 7999999999988886642110 011110 01111 0 011268988
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEcc
Q 026903 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFP 215 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~ 215 (231)
+....- ...+....++++++ |++++....
T Consensus 260 id~~G~--------~~~~~~~~~~~~~~~G~~v~~g~~ 289 (368)
T TIGR02818 260 FECIGN--------VNVMRAALECCHKGWGESIIIGVA 289 (368)
T ss_pred EECCCC--------HHHHHHHHHHhhcCCCeEEEEecc
Confidence 843221 23456677888886 998877764
No 388
>PLN02494 adenosylhomocysteinase
Probab=90.40 E-value=0.93 Score=39.89 Aligned_cols=98 Identities=16% Similarity=0.048 Sum_probs=60.1
Q ss_pred HHHHHHcC--CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCC
Q 026903 98 IVHLHQSG--ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTE 173 (231)
Q Consensus 98 ~~~~~~~~--~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~ 173 (231)
+..+++.. .+.+++|+-+|+|. |......++ .|.+|+++|.++.....+.... ..+. ++.+.. .
T Consensus 241 ~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VIV~e~dp~r~~eA~~~G--------~~vv--~leEal--~ 308 (477)
T PLN02494 241 PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVIVTEIDPICALQALMEG--------YQVL--TLEDVV--S 308 (477)
T ss_pred HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhhHHHHhcC--------Ceec--cHHHHH--h
Confidence 44444443 34678999999996 655555554 7889999999986544443211 1111 222222 2
Q ss_pred ceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 174 LFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 174 ~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
..|+|++...-.++ +.....+.||+||+|+-+..
T Consensus 309 ~ADVVI~tTGt~~v-------I~~e~L~~MK~GAiLiNvGr 342 (477)
T PLN02494 309 EADIFVTTTGNKDI-------IMVDHMRKMKNNAIVCNIGH 342 (477)
T ss_pred hCCEEEECCCCccc-------hHHHHHhcCCCCCEEEEcCC
Confidence 57999863322222 23667789999999987765
No 389
>TIGR00497 hsdM type I restriction system adenine methylase (hsdM). Function: methylation of specific adenine residues; required for both restriction and modification activities. The ECOR124/3 I enzyme recognizes 5'GAA(N7)RTCG. for E.coli see (J. Mol. Biol. 257: 960-969 (1996)).
Probab=90.39 E-value=3.8 Score=36.64 Aligned_cols=105 Identities=13% Similarity=0.143 Sum_probs=65.0
Q ss_pred CCCcEEEecCCCchHHHHhcC---CC---CeEEEEeCChHHHHHHHHHhccCCCC-CceEEEEccCCC-C--CCCCceeE
Q 026903 108 PKGRALVPGCGTGYDVVAMAS---PE---RYVVGLEISDIAIKKAEELSSSLPNA-KFVSFLKADFFT-W--CPTELFDL 177 (231)
Q Consensus 108 ~~~~vLDiGcG~G~~~~~l~~---~~---~~v~~iD~s~~~i~~a~~~~~~~~~~-~~i~~~~~d~~~-~--~~~~~fD~ 177 (231)
+...|.|..||+|.+.....+ .+ ..++|.+....+...++.++.-+... +......+|-.. + .....||.
T Consensus 217 p~~~~~Dp~~Gsg~~L~~~~~~~~~~qe~~~~~gqe~~~~~~~~a~mnm~l~~~~~~t~~~~~~dtl~~~d~~~~~~~D~ 296 (501)
T TIGR00497 217 TVDDVYDMACGSGSLLLQVIKVLGEKTSLVSYYGQEINHTTYNLCRMNMILHNIDYANFNIINADTLTTKEWENENGFEV 296 (501)
T ss_pred CCCcccccccchHHHHHHHHHHhcccccceeEEEEeCchHHHHHHHHHHHHcCCCccccCcccCCcCCCccccccccCCE
Confidence 447999999999998875432 12 36999999999999999875433221 122333333332 1 12346888
Q ss_pred EEeCCcccc---------------------cCh--HHHHHHHHHHHhhcCCCcEEEEE
Q 026903 178 IFDYTFFCA---------------------IEP--EMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 178 i~~~~~~~~---------------------~~~--~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
|+++..+.. +++ +.-..++..+...|++||...++
T Consensus 297 v~~NpPf~~~~~~~~~~~~~~~d~~~~~~~l~~~~~~~~afi~h~~~~L~~gG~~aiI 354 (501)
T TIGR00497 297 VVSNPPYSISWAGDKKSNLVSDVRFKDAGTLAPNSKADLAFVLHALYVLGQEGTAAIV 354 (501)
T ss_pred EeecCCcccccccccccccccccchhcccCCCCCchhhHHHHHHHHHhcCCCCeEEEE
Confidence 776542211 111 12356778888899999975443
No 390
>PLN02827 Alcohol dehydrogenase-like
Probab=90.38 E-value=0.51 Score=40.35 Aligned_cols=93 Identities=19% Similarity=0.206 Sum_probs=58.1
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-----cCCC----CCCCCc
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-----DFFT----WCPTEL 174 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-----d~~~----~~~~~~ 174 (231)
.++.+||-.|+|. |..+..+++ .|. .|+++|.+++..+.+++.-. + .++.. ++.+ .. .+.
T Consensus 192 ~~g~~VlV~G~G~vG~~~iqlak~~G~~~vi~~~~~~~~~~~a~~lGa-----~--~~i~~~~~~~~~~~~v~~~~-~~g 263 (378)
T PLN02827 192 SKGSSVVIFGLGTVGLSVAQGAKLRGASQIIGVDINPEKAEKAKTFGV-----T--DFINPNDLSEPIQQVIKRMT-GGG 263 (378)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEECCCHHHHHHHHHcCC-----c--EEEcccccchHHHHHHHHHh-CCC
Confidence 3567999998865 666666666 776 58999999988888865321 1 11211 1111 11 126
Q ss_pred eeEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEcc
Q 026903 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFP 215 (231)
Q Consensus 175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~ 215 (231)
+|+|+....- ...+....+.+++| |++++....
T Consensus 264 ~d~vid~~G~--------~~~~~~~l~~l~~g~G~iv~~G~~ 297 (378)
T PLN02827 264 ADYSFECVGD--------TGIATTALQSCSDGWGLTVTLGVP 297 (378)
T ss_pred CCEEEECCCC--------hHHHHHHHHhhccCCCEEEEECCc
Confidence 8999853221 12356778888998 999876654
No 391
>PRK07066 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=90.29 E-value=1.2 Score=37.34 Aligned_cols=97 Identities=13% Similarity=0.001 Sum_probs=60.2
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhc-------cCCC-----CCceEEEEccCCCCCCCCce
Q 026903 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSS-------SLPN-----AKFVSFLKADFFTWCPTELF 175 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~-------~~~~-----~~~i~~~~~d~~~~~~~~~f 175 (231)
.+|--||+|+ ...+..++..|..|+..|.+++.++.+...+. +.+. ..++++.. ++.+.. ...
T Consensus 8 ~~VaVIGaG~MG~giA~~~a~aG~~V~l~D~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~i~~~~-~l~~av--~~a 84 (321)
T PRK07066 8 KTFAAIGSGVIGSGWVARALAHGLDVVAWDPAPGAEAALRANVANAWPALERQGLAPGASPARLRFVA-TIEACV--ADA 84 (321)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCChhhHHhhceecC-CHHHHh--cCC
Confidence 5788999995 45566667789999999999998876655322 1111 01222221 221111 356
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
|+|+-. +.+.+ +.+..+++++.+.++|+.+|...
T Consensus 85 DlViEa-vpE~l--~vK~~lf~~l~~~~~~~aIlaSn 118 (321)
T PRK07066 85 DFIQES-APERE--ALKLELHERISRAAKPDAIIASS 118 (321)
T ss_pred CEEEEC-CcCCH--HHHHHHHHHHHHhCCCCeEEEEC
Confidence 888742 22222 56678889999999999855543
No 392
>cd08245 CAD Cinnamyl alcohol dehydrogenases (CAD) and related proteins. Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an
Probab=90.21 E-value=1.5 Score=36.42 Aligned_cols=93 Identities=19% Similarity=0.085 Sum_probs=58.0
Q ss_pred CCCCcEEEecCC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC--CCCceeEEEeCC
Q 026903 107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC--PTELFDLIFDYT 182 (231)
Q Consensus 107 ~~~~~vLDiGcG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--~~~~fD~i~~~~ 182 (231)
.++.+||-.||| .|..+..+++ .|.++++++.+++..+.+++.. . + .++...-.... ....+|+++...
T Consensus 161 ~~~~~vlI~g~g~iG~~~~~~a~~~G~~v~~~~~~~~~~~~~~~~g-~----~--~~~~~~~~~~~~~~~~~~d~vi~~~ 233 (330)
T cd08245 161 RPGERVAVLGIGGLGHLAVQYARAMGFETVAITRSPDKRELARKLG-A----D--EVVDSGAELDEQAAAGGADVILVTV 233 (330)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHhC-C----c--EEeccCCcchHHhccCCCCEEEECC
Confidence 345788888887 5766666666 6889999999998888775421 1 0 11111101100 124689888532
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.- ...+..+.+.|+++|.++....
T Consensus 234 ~~--------~~~~~~~~~~l~~~G~~i~~~~ 257 (330)
T cd08245 234 VS--------GAAAEAALGGLRRGGRIVLVGL 257 (330)
T ss_pred Cc--------HHHHHHHHHhcccCCEEEEECC
Confidence 21 1246777899999999887654
No 393
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=90.10 E-value=8.1 Score=30.61 Aligned_cols=75 Identities=11% Similarity=-0.015 Sum_probs=49.4
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 172 (231)
+.++++|-.|++.| ..+..|++.|.+|+.++.++..++...+.....+ .++.++.+|+.+.. .-
T Consensus 7 l~~k~~lItGas~giG~~ia~~L~~~G~~vvl~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (254)
T PRK08085 7 LAGKNILITGSAQGIGFLLATGLAEYGAEIIINDITAERAELAVAKLRQEG--IKAHAAPFNVTHKQEVEAAIEHIEKDI 84 (254)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEecCCCCHHHHHHHHHHHHHhc
Confidence 44678888886654 3344555588999999998776665544443322 35778888988721 11
Q ss_pred CceeEEEeCCc
Q 026903 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~i~~~~~ 183 (231)
+.+|+++.+..
T Consensus 85 ~~id~vi~~ag 95 (254)
T PRK08085 85 GPIDVLINNAG 95 (254)
T ss_pred CCCCEEEECCC
Confidence 46899998754
No 394
>TIGR02819 fdhA_non_GSH formaldehyde dehydrogenase, glutathione-independent. Members of this family represent a distinct clade within the larger family of zinc-dependent dehydrogenases of medium chain alcohols, a family that also includes the so-called glutathione-dependent formaldehyde dehydrogenase. Members of this protein family have a tightly bound NAD that can act as a true cofactor, rather than a cosubstrate in dehydrogenase reactions, in dismutase reactions for some aldehydes. The name given to this family, however, is formaldehyde dehydrogenase, glutathione-independent.
Probab=89.97 E-value=0.97 Score=38.95 Aligned_cols=102 Identities=15% Similarity=0.104 Sum_probs=60.6
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC----CCCCCcee
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~----~~~~~~fD 176 (231)
.++.+||-.|+|. |..+..+++ .|.+ ++.+|.+++.++.+++.-. + .+... +..+ ......+|
T Consensus 184 ~~g~~VlV~G~G~iG~~aiqlAk~~Ga~~vi~~d~~~~r~~~a~~~Ga-----~--~v~~~~~~~~~~~v~~~~~~~g~D 256 (393)
T TIGR02819 184 GPGSTVYIAGAGPVGLAAAASAQLLGAAVVIVGDLNPARLAQARSFGC-----E--TVDLSKDATLPEQIEQILGEPEVD 256 (393)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCceEEEeCCCHHHHHHHHHcCC-----e--EEecCCcccHHHHHHHHcCCCCCc
Confidence 3457777788865 666666666 6764 6667888888888876321 1 11111 1111 12234689
Q ss_pred EEEeCCcccc------cChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 177 LIFDYTFFCA------IEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 177 ~i~~~~~~~~------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
+++....... .........++...+++++||.++++...
T Consensus 257 vvid~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~i~~~G~~ 301 (393)
T TIGR02819 257 CAVDCVGFEARGHGHDGKKEAPATVLNSLMEVTRVGGAIGIPGLY 301 (393)
T ss_pred EEEECCCCccccccccccccchHHHHHHHHHHhhCCCEEEEeeec
Confidence 9985433210 00011124678888999999999987775
No 395
>KOG2352 consensus Predicted spermine/spermidine synthase [Amino acid transport and metabolism]
Probab=89.92 E-value=1.2 Score=39.08 Aligned_cols=108 Identities=19% Similarity=0.138 Sum_probs=71.3
Q ss_pred CCcEEEecCCCchHHHHhcC--CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----C----CCCCceeEE
Q 026903 109 KGRALVPGCGTGYDVVAMAS--PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----W----CPTELFDLI 178 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l~~--~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~----~~~~~fD~i 178 (231)
+.++|-+|-|.|.+...+.. +...+++++++|++++.|++++...... +..+.-.|-.+ . ..+..||++
T Consensus 296 ~~~~lvvg~ggG~l~sfl~~~~p~~~i~~ve~dP~~l~va~q~f~f~q~~-r~~V~i~dGl~~~~~~~k~~~~~~~~dvl 374 (482)
T KOG2352|consen 296 GGKQLVVGLGGGGLPSFLHMSLPKFQITAVEIDPEMLEVATQYFGFMQSD-RNKVHIADGLDFLQRTAKSQQEDICPDVL 374 (482)
T ss_pred cCcEEEEecCCCccccceeeecCccceeEEEEChhHhhccHhhhchhhhh-hhhhhHhhchHHHHHHhhccccccCCcEE
Confidence 46999999999999888865 4469999999999999999987543211 22222222222 1 123479998
Q ss_pred EeC---Cccccc--ChH--HHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 179 FDY---TFFCAI--EPE--MRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 179 ~~~---~~~~~~--~~~--~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
+.- .-.+-+ ++. ....++...+..|.|.|.+++.-..++
T Consensus 375 ~~dvds~d~~g~~~pp~~fva~~~l~~~k~~l~p~g~f~inlv~r~ 420 (482)
T KOG2352|consen 375 MVDVDSKDSHGMQCPPPAFVAQVALQPVKMILPPRGMFIINLVTRN 420 (482)
T ss_pred EEECCCCCcccCcCCchHHHHHHHHHHHhhccCccceEEEEEecCC
Confidence 842 112222 222 336789999999999999877655554
No 396
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=89.85 E-value=8.9 Score=30.88 Aligned_cols=74 Identities=20% Similarity=0.057 Sum_probs=46.4
Q ss_pred CCCcEEEecCCC--c---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903 108 PKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (231)
Q Consensus 108 ~~~~vLDiGcG~--G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 171 (231)
.++.+|-.|++. | ..+..|++.|.+|+.++.+....+.+.+..... ....++.+|+.+.. .
T Consensus 5 ~~k~~lITGas~~~GIG~aia~~la~~G~~vil~~r~~~~~~~~~~~~~~~---~~~~~~~~Dl~~~~~v~~~~~~~~~~ 81 (262)
T PRK07984 5 SGKRILVTGVASKLSIAYGIAQAMHREGAELAFTYQNDKLKGRVEEFAAQL---GSDIVLPCDVAEDASIDAMFAELGKV 81 (262)
T ss_pred CCCEEEEeCCCCCccHHHHHHHHHHHCCCEEEEEecchhHHHHHHHHHhcc---CCceEeecCCCCHHHHHHHHHHHHhh
Confidence 457899999875 3 246666678999998887743333333322221 23567889988821 1
Q ss_pred CCceeEEEeCCcc
Q 026903 172 TELFDLIFDYTFF 184 (231)
Q Consensus 172 ~~~fD~i~~~~~~ 184 (231)
-+.+|+++.+..+
T Consensus 82 ~g~iD~linnAg~ 94 (262)
T PRK07984 82 WPKFDGFVHSIGF 94 (262)
T ss_pred cCCCCEEEECCcc
Confidence 1468999987643
No 397
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=89.83 E-value=3.5 Score=36.04 Aligned_cols=96 Identities=16% Similarity=0.030 Sum_probs=57.7
Q ss_pred CCCCcEEEecCCCchHHHHhc----CCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeE
Q 026903 107 LPKGRALVPGCGTGYDVVAMA----SPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDL 177 (231)
Q Consensus 107 ~~~~~vLDiGcG~G~~~~~l~----~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~ 177 (231)
....+|+-+|+|. ++..++ +.|..|+.+|.+++.++..++.. ..+.++.+|..+.. .-..+|.
T Consensus 229 ~~~~~iiIiG~G~--~g~~l~~~L~~~~~~v~vid~~~~~~~~~~~~~------~~~~~i~gd~~~~~~L~~~~~~~a~~ 300 (453)
T PRK09496 229 KPVKRVMIVGGGN--IGYYLAKLLEKEGYSVKLIERDPERAEELAEEL------PNTLVLHGDGTDQELLEEEGIDEADA 300 (453)
T ss_pred CCCCEEEEECCCH--HHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHC------CCCeEEECCCCCHHHHHhcCCccCCE
Confidence 3457899998854 444443 36889999999999888777653 13668889987721 1246788
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
|++... .+...-++..+.+.+.+. .+++...++
T Consensus 301 vi~~~~-----~~~~n~~~~~~~~~~~~~-~ii~~~~~~ 333 (453)
T PRK09496 301 FIALTN-----DDEANILSSLLAKRLGAK-KVIALVNRP 333 (453)
T ss_pred EEECCC-----CcHHHHHHHHHHHHhCCC-eEEEEECCc
Confidence 774221 122222334444555554 454544443
No 398
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=89.81 E-value=1.8 Score=36.77 Aligned_cols=92 Identities=26% Similarity=0.225 Sum_probs=54.4
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-c---CCCCCCCCceeEEEeC
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-D---FFTWCPTELFDLIFDY 181 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d---~~~~~~~~~fD~i~~~ 181 (231)
++.+||-.|+|. |..+..+++ .|.++++++.++.....+.+.+.. + .++.. + +.... +.+|+|+..
T Consensus 183 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~~~~~~~~~~~~Ga----~--~vi~~~~~~~~~~~~--~~~D~vid~ 254 (360)
T PLN02586 183 PGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSSSNKEDEAINRLGA----D--SFLVSTDPEKMKAAI--GTMDYIIDT 254 (360)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCcchhhhHHHhCCC----c--EEEcCCCHHHHHhhc--CCCCEEEEC
Confidence 567888899875 677777776 788888888776543322222211 0 11111 1 11111 248888843
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
..- ...+....++|+++|.++.+...
T Consensus 255 ~g~--------~~~~~~~~~~l~~~G~iv~vG~~ 280 (360)
T PLN02586 255 VSA--------VHALGPLLGLLKVNGKLITLGLP 280 (360)
T ss_pred CCC--------HHHHHHHHHHhcCCcEEEEeCCC
Confidence 221 12467788899999999877653
No 399
>PRK07985 oxidoreductase; Provisional
Probab=89.60 E-value=7.5 Score=31.89 Aligned_cols=105 Identities=16% Similarity=0.084 Sum_probs=60.7
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCC--hHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEIS--DIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s--~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------- 170 (231)
..++++|-.|++.| ..+..|++.|.+|+.++.+ .+..+...+.....+ .++.++.+|+.+..
T Consensus 47 ~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~ 124 (294)
T PRK07985 47 LKDRKALVTGGDSGIGRAAAIAYAREGADVAISYLPVEEEDAQDVKKIIEECG--RKAVLLPGDLSDEKFARSLVHEAHK 124 (294)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEecCCcchhhHHHHHHHHHHcC--CeEEEEEccCCCHHHHHHHHHHHHH
Confidence 45578999997654 3455556689999887654 233333333332222 35778899998721
Q ss_pred CCCceeEEEeCCccc-------ccChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903 171 PTELFDLIFDYTFFC-------AIEPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 171 ~~~~fD~i~~~~~~~-------~~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~ 213 (231)
.-+..|+++.+.... ..+.++. ..+++.+...|+.+|.+++..
T Consensus 125 ~~g~id~lv~~Ag~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~m~~~g~iv~iS 185 (294)
T PRK07985 125 ALGGLDIMALVAGKQVAIPDIADLTSEQFQKTFAINVFALFWLTQEAIPLLPKGASIITTS 185 (294)
T ss_pred HhCCCCEEEECCCCCcCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhhhcCCEEEEEC
Confidence 114578888764321 1222221 245566666777788776543
No 400
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=89.60 E-value=1.2 Score=37.17 Aligned_cols=89 Identities=16% Similarity=0.064 Sum_probs=57.4
Q ss_pred CcEEEecC--CCchHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCCC---CCCCceeEEE
Q 026903 110 GRALVPGC--GTGYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFTW---CPTELFDLIF 179 (231)
Q Consensus 110 ~~vLDiGc--G~G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~~---~~~~~fD~i~ 179 (231)
.+||-.|+ |.|..+..+++ .|. +|++++.+++..+.+++.+.. + .++.. ++.+. .....+|+|+
T Consensus 156 ~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s~~~~~~~~~~lGa----~--~vi~~~~~~~~~~i~~~~~~gvd~vi 229 (345)
T cd08293 156 QTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGSDEKCQLLKSELGF----D--AAINYKTDNVAERLRELCPEGVDVYF 229 (345)
T ss_pred CEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhcCC----c--EEEECCCCCHHHHHHHHCCCCceEEE
Confidence 68988886 45778888877 787 799999998888877664321 1 12221 11110 1124699998
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
....- . .+....++|+++|.++...
T Consensus 230 d~~g~-----~----~~~~~~~~l~~~G~iv~~G 254 (345)
T cd08293 230 DNVGG-----E----ISDTVISQMNENSHIILCG 254 (345)
T ss_pred ECCCc-----H----HHHHHHHHhccCCEEEEEe
Confidence 53221 1 2467788999999998765
No 401
>PRK06125 short chain dehydrogenase; Provisional
Probab=89.55 E-value=8.2 Score=30.73 Aligned_cols=76 Identities=14% Similarity=0.046 Sum_probs=49.5
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCcee
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~fD 176 (231)
+.++++|-.|++.| ..+..|++.|.+|++++.+++..+...+.+.... ..++.++.+|+.+.. .-+..|
T Consensus 5 ~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~-~~~~~~~~~D~~~~~~~~~~~~~~g~id 83 (259)
T PRK06125 5 LAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVARDADALEALAADLRAAH-GVDVAVHALDLSSPEAREQLAAEAGDID 83 (259)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHhCCCC
Confidence 34578888897554 2234455688999999998877666554443221 235788889987721 124689
Q ss_pred EEEeCCc
Q 026903 177 LIFDYTF 183 (231)
Q Consensus 177 ~i~~~~~ 183 (231)
+++.+..
T Consensus 84 ~lv~~ag 90 (259)
T PRK06125 84 ILVNNAG 90 (259)
T ss_pred EEEECCC
Confidence 9887643
No 402
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=89.52 E-value=1 Score=38.01 Aligned_cols=92 Identities=17% Similarity=0.177 Sum_probs=56.0
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc----------CCCCCCCCc
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD----------FFTWCPTEL 174 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d----------~~~~~~~~~ 174 (231)
++.+||-.|+|. |..+..+++ .|. +|++++.+++..+.+++.- . + .++..+ +........
T Consensus 177 ~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~~~~~~~~~~~~g-~----~--~vi~~~~~~~~~~~~~i~~~~~~~~ 249 (361)
T cd08231 177 AGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDGSPERLELAREFG-A----D--ATIDIDELPDPQRRAIVRDITGGRG 249 (361)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcC-C----C--eEEcCcccccHHHHHHHHHHhCCCC
Confidence 567888888653 555555565 788 8999999888777665421 1 1 111111 111122346
Q ss_pred eeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 175 FDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 175 fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
+|+|+....- ...+....++|+++|+++....
T Consensus 250 ~d~vid~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 281 (361)
T cd08231 250 ADVVIEASGH--------PAAVPEGLELLRRGGTYVLVGS 281 (361)
T ss_pred CcEEEECCCC--------hHHHHHHHHHhccCCEEEEEcC
Confidence 9999853211 1245677889999999986653
No 403
>KOG1201 consensus Hydroxysteroid 17-beta dehydrogenase 11 [Secondary metabolites biosynthesis, transport and catabolism]
Probab=89.50 E-value=2.4 Score=34.89 Aligned_cols=75 Identities=12% Similarity=0.093 Sum_probs=58.2
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 172 (231)
..++.||-=|.|.| ..+..++++|..++..|++++..+.-.+.....+ ++..+.+|+.+.. .-
T Consensus 36 v~g~~vLITGgg~GlGr~ialefa~rg~~~vl~Din~~~~~etv~~~~~~g---~~~~y~cdis~~eei~~~a~~Vk~e~ 112 (300)
T KOG1201|consen 36 VSGEIVLITGGGSGLGRLIALEFAKRGAKLVLWDINKQGNEETVKEIRKIG---EAKAYTCDISDREEIYRLAKKVKKEV 112 (300)
T ss_pred ccCCEEEEeCCCchHHHHHHHHHHHhCCeEEEEeccccchHHHHHHHHhcC---ceeEEEecCCCHHHHHHHHHHHHHhc
Confidence 45679999999988 4578888899999999999998877777665543 6889999998832 12
Q ss_pred CceeEEEeCCcc
Q 026903 173 ELFDLIFDYTFF 184 (231)
Q Consensus 173 ~~fD~i~~~~~~ 184 (231)
+..|+++.+...
T Consensus 113 G~V~ILVNNAGI 124 (300)
T KOG1201|consen 113 GDVDILVNNAGI 124 (300)
T ss_pred CCceEEEecccc
Confidence 579999987543
No 404
>PRK10458 DNA cytosine methylase; Provisional
Probab=89.37 E-value=1.6 Score=38.57 Aligned_cols=56 Identities=13% Similarity=-0.088 Sum_probs=41.9
Q ss_pred CcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903 110 GRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (231)
Q Consensus 110 ~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 168 (231)
.+++|+.||.|.+..-+-..|. .|.++|+++.+.+.-+.+.... +....+.+|+.+
T Consensus 89 ~~~iDLFsGiGGl~lGfe~aG~~~v~a~Eid~~A~~TY~~N~~~~---p~~~~~~~DI~~ 145 (467)
T PRK10458 89 FRFIDLFAGIGGIRRGFEAIGGQCVFTSEWNKHAVRTYKANWYCD---PATHRFNEDIRD 145 (467)
T ss_pred ceEEEeCcCccHHHHHHHHcCCEEEEEEechHHHHHHHHHHcCCC---CccceeccChhh
Confidence 5999999999999999988777 6788999999988888776321 123344455555
No 405
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.36 E-value=0.94 Score=38.75 Aligned_cols=105 Identities=12% Similarity=0.157 Sum_probs=57.9
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCc
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~ 183 (231)
.++.+|+-+|+|. |..+...+. .|.+|+.+|.+++..+.+...... .+.....+..+.. .-..+|+|++...
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~v~d~~~~~~~~l~~~~g~-----~v~~~~~~~~~l~~~l~~aDvVI~a~~ 239 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVTILDINIDRLRQLDAEFGG-----RIHTRYSNAYEIEDAVKRADLLIGAVL 239 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEEEEECCHHHHHHHHHhcCc-----eeEeccCCHHHHHHHHccCCEEEEccc
Confidence 3557899999984 666555555 788999999998876665544321 1111111111100 0136899996532
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCC
Q 026903 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISD 218 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~ 218 (231)
..--..+ .-+-++..+.++|+++++-+..++.+
T Consensus 240 ~~g~~~p--~lit~~~l~~mk~g~vIvDva~d~GG 272 (370)
T TIGR00518 240 IPGAKAP--KLVSNSLVAQMKPGAVIVDVAIDQGG 272 (370)
T ss_pred cCCCCCC--cCcCHHHHhcCCCCCEEEEEecCCCC
Confidence 1100000 00124455678999988766666543
No 406
>KOG2539 consensus Mitochondrial/chloroplast ribosome small subunit component [Translation, ribosomal structure and biogenesis]
Probab=89.34 E-value=2.4 Score=37.09 Aligned_cols=106 Identities=12% Similarity=-0.021 Sum_probs=64.8
Q ss_pred CCcEEEecCCCchHHHHh--cCCC--CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCC---CC-CCCceeEEE
Q 026903 109 KGRALVPGCGTGYDVVAM--ASPE--RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFT---WC-PTELFDLIF 179 (231)
Q Consensus 109 ~~~vLDiGcG~G~~~~~l--~~~~--~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~---~~-~~~~fD~i~ 179 (231)
+..++|+|.|.|.-.-.+ .-++ ..++.||.+..+......+.....- ..-.++.. -... +. ....||+|+
T Consensus 201 pd~~~dfgsg~~~~~~a~~~lwr~t~~~~~~Vdrs~~~~~~~e~~lr~~~~-~g~~~v~~~~~~r~~~pi~~~~~yDlvi 279 (491)
T KOG2539|consen 201 PDLLRDFGSGAGNGGWAAVLLWRQTKREYSLVDRSRAMLKQSEKNLRDGSH-IGEPIVRKLVFHRQRLPIDIKNGYDLVI 279 (491)
T ss_pred hHHHHHHHhhcccchhhhhhhcccccceeEeeccchHHHHHHHHhhcChhh-cCchhccccchhcccCCCCcccceeeEE
Confidence 468888888876544333 3333 3799999999999888776644100 01112222 1222 22 234699999
Q ss_pred eCCcccccCh-HHHHHHHHH-HHhhcCCCcEEEEEEcc
Q 026903 180 DYTFFCAIEP-EMRAAWAQK-IKDFLKPDGELITLMFP 215 (231)
Q Consensus 180 ~~~~~~~~~~-~~~~~~l~~-~~~~L~pgG~l~~~~~~ 215 (231)
|.+.++++.. ..+....+. +....++|+.++++.-.
T Consensus 280 ~ah~l~~~~s~~~R~~v~~s~~r~~~r~g~~lViIe~g 317 (491)
T KOG2539|consen 280 CAHKLHELGSKFSRLDVPESLWRKTDRSGYFLVIIEKG 317 (491)
T ss_pred eeeeeeccCCchhhhhhhHHHHHhccCCCceEEEEecC
Confidence 9999988754 334344444 44667888888887643
No 407
>PF02086 MethyltransfD12: D12 class N6 adenine-specific DNA methyltransferase; InterPro: IPR012327 In prokaryotes, the major role of DNA methylation is to protect host DNA against degradation by restriction enzymes. There are 2 major classes of DNA methyltransferase that differ in the nature of the modifications they effect. The members of one class (C-MTases) methylate a ring carbon and form C5-methylcytosine (see IPR001525 from INTERPRO). Members of the second class (N-MTases) methylate exocyclic nitrogens and form either N4-methylcytosine (N4-MTases) or N6-methyladenine (N6-MTases). Both classes of MTase utilise the cofactor S-adenosyl-L-methionine (SAM) as the methyl donor and are active as monomeric enzymes []. N-6 adenine-specific DNA methylases (2.1.1.72 from EC) (A-Mtase) are enzymes that specifically methylate the amino group at the C-6 position of adenines in DNA. Such enzymes are found in the three existing types of bacterial restriction-modification systems (in type I system the A-Mtase is the product of the hsdM gene, and in type III it is the product of the mod gene). All of these enzymes recognise a specific sequence in DNA and methylate an adenine in that sequence. It has been shown [, , , ] that A-Mtases contain a conserved motif Asp/Asn-Pro-Pro-Tyr/Phe in their N-terminal section, this conserved region could be involved in substrate binding or in the catalytic activity. The structure of N6-MTase TaqI (M.TaqI) has been resolved to 2.4 A []. The molecule folds into 2 domains, an N-terminal catalytic domain, which contains the catalytic and cofactor binding sites, and comprises a central 9-stranded beta-sheet, surrounded by 5 helices; and a C-terminal DNA recognition domain, which is formed by 4 small beta-sheets and 8 alpha-helices. The N- and C-terminal domains form a cleft that accommodates the DNA substrate. A classification of N-MTases has been proposed, based on conserved motif (CM) arrangements []. According to this classification, N6-MTases that have a DPPY motif (CM II) occuring after the FxGxG motif (CM I) are designated D12 class N6-adenine MTases.; GO: 0009007 site-specific DNA-methyltransferase (adenine-specific) activity, 0032775 DNA methylation on adenine; PDB: 1Q0T_B 1YFJ_B 1Q0S_A 1YFL_B 1YF3_B 2DPM_A 2ORE_F 2G1P_B.
Probab=89.22 E-value=0.94 Score=36.35 Aligned_cols=51 Identities=14% Similarity=0.062 Sum_probs=34.9
Q ss_pred HHHHHHcCCC-CCCcEEEecCCCchHHHHhcCCCCeEEEEeCChHHHHHHHH
Q 026903 98 IVHLHQSGAL-PKGRALVPGCGTGYDVVAMASPERYVVGLEISDIAIKKAEE 148 (231)
Q Consensus 98 ~~~~~~~~~~-~~~~vLDiGcG~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~ 148 (231)
+..+...... +..+++|+.||+|..+..+...+..|+.-|+++..+...+.
T Consensus 9 ~~~I~~~ip~~~~~~~vepF~G~g~V~~~~~~~~~~vi~ND~~~~l~~~~~~ 60 (260)
T PF02086_consen 9 AKWIIELIPKNKHKTYVEPFAGGGSVFLNLKQPGKRVIINDINPDLINFWKA 60 (260)
T ss_dssp HHHHHHHS-S-S-SEEEETT-TTSHHHHCC---SSEEEEEES-HHHHHHHHH
T ss_pred HHHHHHHcCCCCCCEEEEEecchhHHHHHhcccccceeeeechHHHHHHHHH
Confidence 3344443333 56899999999999999998888899999999988877663
No 408
>PRK07502 cyclohexadienyl dehydrogenase; Validated
Probab=89.06 E-value=2.5 Score=34.99 Aligned_cols=87 Identities=22% Similarity=0.133 Sum_probs=50.2
Q ss_pred CcEEEecCCC-c-hHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903 110 GRALVPGCGT-G-YDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 110 ~~vLDiGcG~-G-~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~ 185 (231)
.+|.-||+|. | .++..+.+.|. +|+++|.+++..+.+++. +. ......+..+.. ...|+|+..-
T Consensus 7 ~~I~IIG~G~mG~sla~~l~~~g~~~~V~~~dr~~~~~~~a~~~----g~---~~~~~~~~~~~~--~~aDvViiav--- 74 (307)
T PRK07502 7 DRVALIGIGLIGSSLARAIRRLGLAGEIVGADRSAETRARAREL----GL---GDRVTTSAAEAV--KGADLVILCV--- 74 (307)
T ss_pred cEEEEEeeCHHHHHHHHHHHhcCCCcEEEEEECCHHHHHHHHhC----CC---CceecCCHHHHh--cCCCEEEECC---
Confidence 5789999986 3 44555555663 899999999887776542 11 001111211111 3478887432
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEE
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~ 210 (231)
++.....+++.+...+++|+.++
T Consensus 75 --p~~~~~~v~~~l~~~l~~~~iv~ 97 (307)
T PRK07502 75 --PVGASGAVAAEIAPHLKPGAIVT 97 (307)
T ss_pred --CHHHHHHHHHHHHhhCCCCCEEE
Confidence 22333455666666777776543
No 409
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=89.05 E-value=0.93 Score=37.51 Aligned_cols=92 Identities=16% Similarity=0.118 Sum_probs=59.2
Q ss_pred CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC---CCCCCceeE
Q 026903 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT---WCPTELFDL 177 (231)
Q Consensus 107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~---~~~~~~fD~ 177 (231)
.++.+||-.|+ |.|..+..+++ .|.++++++.+++..+.+++.- . + .++.. ++.+ ......+|+
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s~~~~~~l~~~G-a----~--~vi~~~~~~~~~~v~~~~~~gvd~ 214 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGSDDKVAWLKELG-F----D--AVFNYKTVSLEEALKEAAPDGIDC 214 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC-C----C--EEEeCCCccHHHHHHHHCCCCcEE
Confidence 35578888874 45777777777 7889999999998888887632 1 1 12221 1111 011246899
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
|+.... ...+....++|+++|.++....
T Consensus 215 vld~~g---------~~~~~~~~~~l~~~G~iv~~g~ 242 (329)
T cd08294 215 YFDNVG---------GEFSSTVLSHMNDFGRVAVCGS 242 (329)
T ss_pred EEECCC---------HHHHHHHHHhhccCCEEEEEcc
Confidence 984322 1246778899999999877643
No 410
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=88.99 E-value=0.94 Score=40.97 Aligned_cols=92 Identities=16% Similarity=0.069 Sum_probs=57.7
Q ss_pred CcEEEecCCC-chHHHH-hcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----CCCceeEEEeCC
Q 026903 110 GRALVPGCGT-GYDVVA-MASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----PTELFDLIFDYT 182 (231)
Q Consensus 110 ~~vLDiGcG~-G~~~~~-l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----~~~~fD~i~~~~ 182 (231)
.+++-+|||. |+.... |.+.|..++.+|.+++.++.+++. ....+.+|..+.. .-+.+|.+++.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vvvId~d~~~~~~~~~~--------g~~~i~GD~~~~~~L~~a~i~~a~~viv~- 488 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLVVIETSRTRVDELRER--------GIRAVLGNAANEEIMQLAHLDCARWLLLT- 488 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEEEEECCHHHHHHHHHC--------CCeEEEcCCCCHHHHHhcCccccCEEEEE-
Confidence 5888888876 444333 334788999999999998888752 2678999999831 12467866531
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.++++....+-...+...|+..++....
T Consensus 489 ----~~~~~~~~~iv~~~~~~~~~~~iiar~~ 516 (558)
T PRK10669 489 ----IPNGYEAGEIVASAREKRPDIEIIARAH 516 (558)
T ss_pred ----cCChHHHHHHHHHHHHHCCCCeEEEEEC
Confidence 2222222223334455677777766543
No 411
>PRK05396 tdh L-threonine 3-dehydrogenase; Validated
Probab=88.97 E-value=1.1 Score=37.52 Aligned_cols=95 Identities=20% Similarity=0.249 Sum_probs=58.2
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC----CCCCCcee
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~----~~~~~~fD 176 (231)
.++.+||-.|+|. |..+..+++ .|. ++++++.+++..+.+++.-. + .++.. +..+ ......+|
T Consensus 162 ~~g~~vlV~~~g~vg~~~~~la~~~G~~~v~~~~~~~~~~~~~~~lg~-----~--~~~~~~~~~~~~~~~~~~~~~~~d 234 (341)
T PRK05396 162 LVGEDVLITGAGPIGIMAAAVAKHVGARHVVITDVNEYRLELARKMGA-----T--RAVNVAKEDLRDVMAELGMTEGFD 234 (341)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCHHHHHHHHHhCC-----c--EEecCccccHHHHHHHhcCCCCCC
Confidence 3567777777764 666666666 777 68888888887777665321 1 11111 1111 22334689
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
+|+....- ...+....++|+++|.++......
T Consensus 235 ~v~d~~g~--------~~~~~~~~~~l~~~G~~v~~g~~~ 266 (341)
T PRK05396 235 VGLEMSGA--------PSAFRQMLDNMNHGGRIAMLGIPP 266 (341)
T ss_pred EEEECCCC--------HHHHHHHHHHHhcCCEEEEEecCC
Confidence 99853221 234677888999999998876543
No 412
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=88.97 E-value=3.5 Score=33.94 Aligned_cols=90 Identities=16% Similarity=0.091 Sum_probs=56.3
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~ 184 (231)
.++.+||-.|+|. |..+..+++ .|.++++++.+++..+.+++ ... . .+. +.........+|+++....-
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~~~~~~~~~~~-~g~---~-~~~----~~~~~~~~~~~d~vid~~g~ 224 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGRHSEKLALARR-LGV---E-TVL----PDEAESEGGGFDVVVEATGS 224 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHHH-cCC---c-EEe----CccccccCCCCCEEEECCCC
Confidence 3457888887653 455555555 78899999999998888876 211 1 111 11111233569999853211
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
...+....++|+++|.++...
T Consensus 225 --------~~~~~~~~~~l~~~g~~v~~~ 245 (319)
T cd08242 225 --------PSGLELALRLVRPRGTVVLKS 245 (319)
T ss_pred --------hHHHHHHHHHhhcCCEEEEEc
Confidence 124567788899999988643
No 413
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.96 E-value=3.4 Score=33.73 Aligned_cols=94 Identities=19% Similarity=0.170 Sum_probs=57.4
Q ss_pred cEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhc-------cCCC-C--------CceEEEEccCCCCCCC
Q 026903 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSS-------SLPN-A--------KFVSFLKADFFTWCPT 172 (231)
Q Consensus 111 ~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~-------~~~~-~--------~~i~~~~~d~~~~~~~ 172 (231)
+|--+|+|. +..+..++..|.+|+++|.+++.++.++++.. +.+. . .++.+ ..|... .
T Consensus 5 kI~VIG~G~mG~~ia~~la~~g~~V~~~d~~~~~~~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~l~~-~~~~~~---~ 80 (282)
T PRK05808 5 KIGVIGAGTMGNGIAQVCAVAGYDVVMVDISDAAVDRGLATITKSLDRLVKKGKMTEADKEAALARITG-TTDLDD---L 80 (282)
T ss_pred EEEEEccCHHHHHHHHHHHHCCCceEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCCHHH---h
Confidence 678889985 56666677788899999999999876553221 1110 0 02221 122211 2
Q ss_pred CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
...|+|+..- ... .+....+++++.+.++|+..|..
T Consensus 81 ~~aDlVi~av-~e~--~~~k~~~~~~l~~~~~~~~il~s 116 (282)
T PRK05808 81 KDADLVIEAA-TEN--MDLKKKIFAQLDEIAKPEAILAT 116 (282)
T ss_pred ccCCeeeecc-ccc--HHHHHHHHHHHHhhCCCCcEEEE
Confidence 4578887321 111 13446888999999999987744
No 414
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.92 E-value=2.1 Score=35.14 Aligned_cols=96 Identities=20% Similarity=0.202 Sum_probs=57.4
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC--------CCC---------CceEEEEccCCCCC
Q 026903 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL--------PNA---------KFVSFLKADFFTWC 170 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~--------~~~---------~~i~~~~~d~~~~~ 170 (231)
.+|.-+|+|. +..+..++..|.+|+.+|.+++.++.+++..... ... .++.+ ..|+.+..
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~d~~~a~ 82 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVTIYDISDEALEKAKERIAKLADRYVRDLEATKEAPAEAALNRITL-TTDLAEAV 82 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhhHHHHHcCeEE-eCCHHHHh
Confidence 4788899985 3445555668899999999999888876653210 000 12222 22222221
Q ss_pred CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
...|+|+.... .. .+....+++++...++++.+|..
T Consensus 83 --~~aDlVieavp-e~--~~~k~~~~~~l~~~~~~~~ii~s 118 (287)
T PRK08293 83 --KDADLVIEAVP-ED--PEIKGDFYEELAKVAPEKTIFAT 118 (287)
T ss_pred --cCCCEEEEecc-CC--HHHHHHHHHHHHhhCCCCCEEEE
Confidence 35688874322 11 24567778888888887776543
No 415
>COG5379 BtaA S-adenosylmethionine:diacylglycerol 3-amino-3-carboxypropyl transferase [Lipid metabolism]
Probab=88.81 E-value=1.1 Score=36.86 Aligned_cols=77 Identities=9% Similarity=-0.047 Sum_probs=64.0
Q ss_pred EEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEE
Q 026903 134 VGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 134 ~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~ 210 (231)
.-+...+...+.++++.. ++.+.++|+.+.. +.+..|.++...+-.++++.....++.++.+-+.+|..++
T Consensus 290 lP~yl~~~~YEsir~n~~------RV~ihha~~iE~l~~k~ag~Vdr~iLlDaqdwmtd~qln~lws~isrta~~gA~Vi 363 (414)
T COG5379 290 LPAYLDEGVYESIRQNLR------RVAIHHADIIELLAGKPAGNVDRYILLDAQDWMTDGQLNSLWSEISRTAEAGARVI 363 (414)
T ss_pred CChhhchhhHHHHHhhhh------heeeecccHHHHhccCCCCCcceEEEecchhhcccchHHHHHHHHhhccCCCcEEE
Confidence 446667777888887763 5889999999943 5678999999999999999999999999999999999999
Q ss_pred EEEccC
Q 026903 211 TLMFPI 216 (231)
Q Consensus 211 ~~~~~~ 216 (231)
+-+...
T Consensus 364 fRtaae 369 (414)
T COG5379 364 FRTAAE 369 (414)
T ss_pred Eecccc
Confidence 866543
No 416
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=88.78 E-value=1.9 Score=35.38 Aligned_cols=95 Identities=15% Similarity=0.102 Sum_probs=56.9
Q ss_pred cEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-CC--------CceEEEEccCCCCCCC
Q 026903 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-NA--------KFVSFLKADFFTWCPT 172 (231)
Q Consensus 111 ~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~~~ 172 (231)
+|.-||+|. +..+..+++.|.+|+.+|.+++.++.+.++.... + .. .++++ ..+..+..
T Consensus 3 ~V~VIG~G~mG~~iA~~la~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~-~~~~~~~~-- 79 (288)
T PRK09260 3 KLVVVGAGVMGRGIAYVFAVSGFQTTLVDIKQEQLESAQQEIASIFEQGVARGKLTEAARQAALARLSY-SLDLKAAV-- 79 (288)
T ss_pred EEEEECccHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEE-eCcHHHhh--
Confidence 678889985 3455566678999999999999998876542110 0 00 01221 12222222
Q ss_pred CceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 173 ELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 173 ~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
...|+|+..-. . +.+....++.++.+.++|+.++.+
T Consensus 80 ~~aD~Vi~avp-e--~~~~k~~~~~~l~~~~~~~~il~~ 115 (288)
T PRK09260 80 ADADLVIEAVP-E--KLELKKAVFETADAHAPAECYIAT 115 (288)
T ss_pred cCCCEEEEecc-C--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 35788884322 1 113456778888888888876644
No 417
>PRK07063 short chain dehydrogenase; Provisional
Probab=88.74 E-value=2.6 Score=33.63 Aligned_cols=77 Identities=18% Similarity=0.085 Sum_probs=52.0
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
+.++++|-.|++.| ..+..|++.|.+|+.++.+++.++...+.+.......++.++.+|+.+... -
T Consensus 5 l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~Dl~~~~~~~~~~~~~~~~~ 84 (260)
T PRK07063 5 LAGKVALVTGAAQGIGAAIARAFAREGAAVALADLDAALAERAAAAIARDVAGARVLAVPADVTDAASVAAAVAAAEEAF 84 (260)
T ss_pred cCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhccCCceEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 34578998998665 234555668999999999888777666555431112458889999987210 1
Q ss_pred CceeEEEeCCc
Q 026903 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~i~~~~~ 183 (231)
+.+|.++.+..
T Consensus 85 g~id~li~~ag 95 (260)
T PRK07063 85 GPLDVLVNNAG 95 (260)
T ss_pred CCCcEEEECCC
Confidence 46899887654
No 418
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=88.70 E-value=1.7 Score=36.37 Aligned_cols=106 Identities=16% Similarity=0.069 Sum_probs=59.5
Q ss_pred CCCCCcEEEecCCC-chH-HHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903 106 ALPKGRALVPGCGT-GYD-VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~-G~~-~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~ 183 (231)
.+.+++|--||+|. |.- +..|...|.+|++.+......+.+... + .. ..++.+.. ...|+|+..
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r~~~s~~~A~~~----G----~~--v~sl~Eaa--k~ADVV~ll-- 78 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVRPGKSFEVAKAD----G----FE--VMSVSEAV--RTAQVVQML-- 78 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEECcchhhHHHHHc----C----CE--ECCHHHHH--hcCCEEEEe--
Confidence 45568999999986 533 333444788998887554443333321 1 22 22333333 346888843
Q ss_pred ccccChHHHHHHH-HHHHhhcCCCcEEEEEE-ccCCCCCCCCCCCCC
Q 026903 184 FCAIEPEMRAAWA-QKIKDFLKPDGELITLM-FPISDHVGGPPYKVS 228 (231)
Q Consensus 184 ~~~~~~~~~~~~l-~~~~~~L~pgG~l~~~~-~~~~~~~~~~~~~~~ 228 (231)
+|++....++ ..+...|+||..|++.+ |..-..---||=+|+
T Consensus 79 ---LPd~~t~~V~~~eil~~MK~GaiL~f~hgfni~~~~i~pp~~vd 122 (335)
T PRK13403 79 ---LPDEQQAHVYKAEVEENLREGQMLLFSHGFNIHFGQINPPSYVD 122 (335)
T ss_pred ---CCChHHHHHHHHHHHhcCCCCCEEEECCCcceecCceeCCCCCe
Confidence 3322334454 56899999999876643 333332233555543
No 419
>KOG2918 consensus Carboxymethyl transferase [Posttranslational modification, protein turnover, chaperones]
Probab=88.52 E-value=13 Score=31.04 Aligned_cols=119 Identities=10% Similarity=0.040 Sum_probs=75.6
Q ss_pred HHHHHHHHcCCCCCCcEEEecCCCchHHHHhcCCC----CeEEEEeCChHHHHHHHHHhccCC-----------------
Q 026903 96 PIIVHLHQSGALPKGRALVPGCGTGYDVVAMASPE----RYVVGLEISDIAIKKAEELSSSLP----------------- 154 (231)
Q Consensus 96 ~~~~~~~~~~~~~~~~vLDiGcG~G~~~~~l~~~~----~~v~~iD~s~~~i~~a~~~~~~~~----------------- 154 (231)
..+..++.+ ......|+.+|||.-.....|...+ ..++=+|+++....+... ....+
T Consensus 76 ~~v~~Fl~~-~~~~~qivnLGcG~D~l~frL~s~~~~~~~~fievDfp~~~~rKi~i-k~~~~~s~~l~~~~~eD~~~~s 153 (335)
T KOG2918|consen 76 HAVRAFLEQ-TDGKKQIVNLGAGFDTLYFRLLSSGELDRVKFIEVDFPEVVERKISI-KRKPELSSILLGLHDEDVVDLS 153 (335)
T ss_pred HHHHHHHHh-cCCceEEEEcCCCccchhhhhhccCCCCcceEEEecCcHHHHHHHhh-cccCchhhhhhccccccccccC
Confidence 334555554 2233699999999988888887744 367778887776666511 11110
Q ss_pred ----CCCceEEEEccCCCCC-----------CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 155 ----NAKFVSFLKADFFTWC-----------PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 155 ----~~~~i~~~~~d~~~~~-----------~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
-.++...+.+|+.+.. ...-.-++++--++.+++++.-..+++.+.+..+..+.+......+
T Consensus 154 ~~~l~s~~Y~~~g~DLrdl~ele~kL~~c~~d~~lpTi~iaEcvLvYM~pe~S~~Li~w~~~~F~~a~fv~YEQi~~ 230 (335)
T KOG2918|consen 154 GTDLHSGRYHLIGCDLRDLNELEEKLKKCGLDTNLPTIFIAECVLVYMEPEESANLIKWAASKFENAHFVNYEQINP 230 (335)
T ss_pred cceeccCceeeeccchhhhHHHHHHHHhccCCcCcceeehhhhhheeccHHHHHHHHHHHHHhCCcccEEEEeccCC
Confidence 1125566667766411 0123445556677888999888899999999888887665554443
No 420
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.52 E-value=9.5 Score=30.51 Aligned_cols=103 Identities=13% Similarity=0.089 Sum_probs=59.2
Q ss_pred CCCCcEEEecCCC-chH----HHHhcCCCCeEEEEeCCh---HHHHHHHHHhccCCCCCceEEEEccCCCCC--------
Q 026903 107 LPKGRALVPGCGT-GYD----VVAMASPERYVVGLEISD---IAIKKAEELSSSLPNAKFVSFLKADFFTWC-------- 170 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~----~~~l~~~~~~v~~iD~s~---~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------- 170 (231)
..++.+|-.|+++ +.. +..|++.|.+|+.++.+. +.++...+... ..++.++.+|+.+..
T Consensus 5 ~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~~r~~~~~~~~~~~~~~~~----~~~~~~~~~Dv~d~~~v~~~~~~ 80 (257)
T PRK08594 5 LEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFTYAGERLEKEVRELADTLE----GQESLLLPCDVTSDEEITACFET 80 (257)
T ss_pred cCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEecCcccchHHHHHHHHHcC----CCceEEEecCCCCHHHHHHHHHH
Confidence 4467899999762 333 445555899998886543 33333333221 135778899998821
Q ss_pred ---CCCceeEEEeCCcccc----------cChHHHH-----------HHHHHHHhhcCCCcEEEEEE
Q 026903 171 ---PTELFDLIFDYTFFCA----------IEPEMRA-----------AWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 171 ---~~~~fD~i~~~~~~~~----------~~~~~~~-----------~~l~~~~~~L~pgG~l~~~~ 213 (231)
.-+.+|+++.+..+.. .+.+... .+.+.+...|+++|.++.+.
T Consensus 81 ~~~~~g~ld~lv~nag~~~~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~Iv~is 147 (257)
T PRK08594 81 IKEEVGVIHGVAHCIAFANKEDLRGEFLETSRDGFLLAQNISAYSLTAVAREAKKLMTEGGSIVTLT 147 (257)
T ss_pred HHHhCCCccEEEECcccCCCCcCCCccccCCHHHHHHHHhhhHHHHHHHHHHHHHhcccCceEEEEc
Confidence 1256899887643321 1212111 23455667777788776554
No 421
>cd08277 liver_alcohol_DH_like Liver alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ i
Probab=88.50 E-value=1.1 Score=37.90 Aligned_cols=97 Identities=21% Similarity=0.242 Sum_probs=58.2
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc--CCC----CCCCCceeE
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD--FFT----WCPTELFDL 177 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d--~~~----~~~~~~fD~ 177 (231)
.++.+||-.|+|. |..+..+++ .|. +|+++|.+++..+.+++.-... -+.....+ +.+ ... ..+|+
T Consensus 183 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~Vi~~~~~~~~~~~~~~~ga~~----~i~~~~~~~~~~~~~~~~~~-~g~d~ 257 (365)
T cd08277 183 EPGSTVAVFGLGAVGLSAIMGAKIAGASRIIGVDINEDKFEKAKEFGATD----FINPKDSDKPVSEVIREMTG-GGVDY 257 (365)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCCc----EeccccccchHHHHHHHHhC-CCCCE
Confidence 4567898888764 555566666 777 7999999999888886532110 01111100 011 112 46899
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccC
Q 026903 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPI 216 (231)
Q Consensus 178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~~ 216 (231)
|+....- ...+....+.|+++ |.++......
T Consensus 258 vid~~g~--------~~~~~~~~~~l~~~~G~~v~~g~~~ 289 (365)
T cd08277 258 SFECTGN--------ADLMNEALESTKLGWGVSVVVGVPP 289 (365)
T ss_pred EEECCCC--------hHHHHHHHHhcccCCCEEEEEcCCC
Confidence 9843211 13467778889885 9988776543
No 422
>TIGR00692 tdh L-threonine 3-dehydrogenase. E. coli His-90 modulates substrate specificity and is believed part of the active site.
Probab=88.48 E-value=0.92 Score=37.92 Aligned_cols=97 Identities=20% Similarity=0.291 Sum_probs=56.7
Q ss_pred CCCCcEEEecCC-CchHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEE
Q 026903 107 LPKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLDiGcG-~G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~ 179 (231)
.++.+||-.|+| .|..+..+++ .|.+ |++++-+++..+.+++.-.. .-+.....++.+ ......+|+|+
T Consensus 160 ~~g~~vlI~~~g~vg~~a~~la~~~G~~~v~~~~~~~~~~~~~~~~g~~----~~v~~~~~~~~~~l~~~~~~~~~d~vl 235 (340)
T TIGR00692 160 ISGKSVLVTGAGPIGLMAIAVAKASGAYPVIVSDPNEYRLELAKKMGAT----YVVNPFKEDVVKEVADLTDGEGVDVFL 235 (340)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEECCCHHHHHHHHHhCCc----EEEcccccCHHHHHHHhcCCCCCCEEE
Confidence 355677777765 3556666666 7775 88898888777776653210 001111111111 22334689998
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
....- ...+..+.+.|+++|.++.....
T Consensus 236 d~~g~--------~~~~~~~~~~l~~~g~~v~~g~~ 263 (340)
T TIGR00692 236 EMSGA--------PKALEQGLQAVTPGGRVSLLGLP 263 (340)
T ss_pred ECCCC--------HHHHHHHHHhhcCCCEEEEEccC
Confidence 54211 13467788999999998776554
No 423
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=88.43 E-value=2.5 Score=33.61 Aligned_cols=76 Identities=17% Similarity=0.056 Sum_probs=50.1
Q ss_pred CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903 106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 171 (231)
.+.++++|-.|++.| .++..+++.|.+|+.++.+++.++...+.+...+ .++.++.+|+.+.. .
T Consensus 8 ~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 85 (256)
T PRK06124 8 SLAGQVALVTGSARGLGFEIARALAGAGAHVLVNGRNAATLEAAVAALRAAG--GAAEALAFDIADEEAVAAAFARIDAE 85 (256)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHh
Confidence 456788998887554 2334455589999999999876665554443322 35788999988721 0
Q ss_pred CCceeEEEeCCc
Q 026903 172 TELFDLIFDYTF 183 (231)
Q Consensus 172 ~~~fD~i~~~~~ 183 (231)
-+++|.++.+..
T Consensus 86 ~~~id~vi~~ag 97 (256)
T PRK06124 86 HGRLDILVNNVG 97 (256)
T ss_pred cCCCCEEEECCC
Confidence 135788887644
No 424
>PRK14620 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=88.34 E-value=4.6 Score=33.74 Aligned_cols=99 Identities=15% Similarity=0.123 Sum_probs=59.8
Q ss_pred cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC------CCCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903 111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSL------PNAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~------~~~~~i~~~~~d~~~~~~~~~fD~i~~~~ 182 (231)
+|.-+|||. | .++..|++.|..|+.++.+++.++..++.-... ....++.+. .|..+.. .+.+|+|+.
T Consensus 2 kI~IiGaGa~G~ala~~L~~~g~~V~l~~r~~~~~~~i~~~~~~~~~~~~~~~~~~i~~~-~~~~~~~-~~~~Dliii-- 77 (326)
T PRK14620 2 KISILGAGSFGTAIAIALSSKKISVNLWGRNHTTFESINTKRKNLKYLPTCHLPDNISVK-SAIDEVL-SDNATCIIL-- 77 (326)
T ss_pred EEEEECcCHHHHHHHHHHHHCCCeEEEEecCHHHHHHHHHcCCCcccCCCCcCCCCeEEe-CCHHHHH-hCCCCEEEE--
Confidence 578899987 3 456666778889999999888777666531110 011112221 1111111 135788772
Q ss_pred cccccChHHHHHHHHHHHh-hcCCCcEEEEEEccC
Q 026903 183 FFCAIEPEMRAAWAQKIKD-FLKPDGELITLMFPI 216 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~-~L~pgG~l~~~~~~~ 216 (231)
.+++.....+++.+.. .++++..+++..-..
T Consensus 78 ---avks~~~~~~l~~l~~~~l~~~~~vv~~~nGi 109 (326)
T PRK14620 78 ---AVPTQQLRTICQQLQDCHLKKNTPILICSKGI 109 (326)
T ss_pred ---EeCHHHHHHHHHHHHHhcCCCCCEEEEEEcCe
Confidence 2455667788888887 888888776654433
No 425
>KOG1208 consensus Dehydrogenases with different specificities (related to short-chain alcohol dehydrogenases) [Secondary metabolites biosynthesis, transport and catabolism]
Probab=88.27 E-value=8.8 Score=32.10 Aligned_cols=80 Identities=16% Similarity=0.088 Sum_probs=58.0
Q ss_pred CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903 106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 171 (231)
..++..++--|+-+| ..+..|+.+|.+|+-.-.+.+..+.+.+.+.......++.++++|+.++. .
T Consensus 32 ~~~~~~~vVTGansGIG~eta~~La~~Ga~Vv~~~R~~~~~~~~~~~i~~~~~~~~i~~~~lDLssl~SV~~fa~~~~~~ 111 (314)
T KOG1208|consen 32 DLSGKVALVTGATSGIGFETARELALRGAHVVLACRNEERGEEAKEQIQKGKANQKIRVIQLDLSSLKSVRKFAEEFKKK 111 (314)
T ss_pred cCCCcEEEEECCCCchHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceEEEECCCCCHHHHHHHHHHHHhc
Confidence 344568888888776 34667777999999999998777777776665434457999999999832 2
Q ss_pred CCceeEEEeCCccc
Q 026903 172 TELFDLIFDYTFFC 185 (231)
Q Consensus 172 ~~~fD~i~~~~~~~ 185 (231)
....|+.+.+....
T Consensus 112 ~~~ldvLInNAGV~ 125 (314)
T KOG1208|consen 112 EGPLDVLINNAGVM 125 (314)
T ss_pred CCCccEEEeCcccc
Confidence 35789988875443
No 426
>cd08278 benzyl_alcohol_DH Benzyl alcohol dehydrogenase. Benzyl alcohol dehydrogenase is similar to liver alcohol dehydrogenase, but has some amino acid substitutions near the active site, which may determine the enzyme's specificity of oxidizing aromatic substrates. Also known as aryl-alcohol dehydrogenases, they catalyze the conversion of an aromatic alcohol + NAD+ to an aromatic aldehyde + NADH + H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononu
Probab=88.27 E-value=0.91 Score=38.53 Aligned_cols=91 Identities=23% Similarity=0.288 Sum_probs=57.3
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc---CCC----CCCCCceeE
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD---FFT----WCPTELFDL 177 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d---~~~----~~~~~~fD~ 177 (231)
++.+||-.|+|. |..+..+++ .|. .++++|.++...+.+++.-. -.++..+ ..+ .. ...+|+
T Consensus 186 ~g~~vlI~g~g~vG~~~~~la~~~G~~~v~~~~~~~~k~~~~~~~g~-------~~~i~~~~~~~~~~v~~~~-~~~~d~ 257 (365)
T cd08278 186 PGSSIAVFGAGAVGLAAVMAAKIAGCTTIIAVDIVDSRLELAKELGA-------THVINPKEEDLVAAIREIT-GGGVDY 257 (365)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCC-------cEEecCCCcCHHHHHHHHh-CCCCcE
Confidence 457888888764 666666666 777 69999999988877765321 1122211 111 12 346899
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
|+..... ...+....+.|+++|.++....
T Consensus 258 vld~~g~--------~~~~~~~~~~l~~~G~~v~~g~ 286 (365)
T cd08278 258 ALDTTGV--------PAVIEQAVDALAPRGTLALVGA 286 (365)
T ss_pred EEECCCC--------cHHHHHHHHHhccCCEEEEeCc
Confidence 9853221 1246778888999999876553
No 427
>PRK06500 short chain dehydrogenase; Provisional
Probab=88.25 E-value=8.9 Score=30.12 Aligned_cols=71 Identities=14% Similarity=0.042 Sum_probs=45.8
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026903 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~ 173 (231)
+++++|-.|++.| ..+..+++.|.+|++++.+++.++...+... .++.++.+|+.+... .+
T Consensus 5 ~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~~ 79 (249)
T PRK06500 5 QGKTALITGGTSGIGLETARQFLAEGARVAITGRDPASLEAARAELG-----ESALVIRADAGDVAAQKALAQALAEAFG 79 (249)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecCCHHHHHHHHHHhC-----CceEEEEecCCCHHHHHHHHHHHHHHhC
Confidence 4567888887654 2344455688999999998776655444331 347788888876211 13
Q ss_pred ceeEEEeCCc
Q 026903 174 LFDLIFDYTF 183 (231)
Q Consensus 174 ~fD~i~~~~~ 183 (231)
.+|+++.+..
T Consensus 80 ~id~vi~~ag 89 (249)
T PRK06500 80 RLDAVFINAG 89 (249)
T ss_pred CCCEEEECCC
Confidence 6898887654
No 428
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=88.12 E-value=9.5 Score=33.32 Aligned_cols=91 Identities=14% Similarity=0.078 Sum_probs=56.1
Q ss_pred cEEEecCCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC---C--CCCceeEEEeC
Q 026903 111 RALVPGCGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW---C--PTELFDLIFDY 181 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~---~--~~~~fD~i~~~ 181 (231)
+|+-+|| |..+..+++ .|..|+.+|.+++.++.+++.. .+.++.+|..+. . .-..+|.|++.
T Consensus 2 ~viIiG~--G~ig~~~a~~L~~~g~~v~vid~~~~~~~~~~~~~-------~~~~~~gd~~~~~~l~~~~~~~a~~vi~~ 72 (453)
T PRK09496 2 KIIIVGA--GQVGYTLAENLSGENNDVTVIDTDEERLRRLQDRL-------DVRTVVGNGSSPDVLREAGAEDADLLIAV 72 (453)
T ss_pred EEEEECC--CHHHHHHHHHHHhCCCcEEEEECCHHHHHHHHhhc-------CEEEEEeCCCCHHHHHHcCCCcCCEEEEe
Confidence 5677777 455544443 7889999999999887776522 367888888772 1 12468877743
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
. +.+.....+....+.+.|.-.+++...+
T Consensus 73 ~-----~~~~~n~~~~~~~r~~~~~~~ii~~~~~ 101 (453)
T PRK09496 73 T-----DSDETNMVACQIAKSLFGAPTTIARVRN 101 (453)
T ss_pred c-----CChHHHHHHHHHHHHhcCCCeEEEEECC
Confidence 2 2223334455556666566566555443
No 429
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=88.08 E-value=11 Score=30.36 Aligned_cols=75 Identities=16% Similarity=0.065 Sum_probs=46.8
Q ss_pred CCCCcEEEecCCC--c---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------
Q 026903 107 LPKGRALVPGCGT--G---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------- 170 (231)
Q Consensus 107 ~~~~~vLDiGcG~--G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------- 170 (231)
..++.+|-.|++. | ..+..|++.|.+|+.++.++...+..++.....+ ...++.+|+.+..
T Consensus 5 l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~~r~~~~~~~~~~~~~~~g---~~~~~~~Dv~d~~~v~~~~~~~~~ 81 (271)
T PRK06505 5 MQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFTYQGEALGKRVKPLAESLG---SDFVLPCDVEDIASVDAVFEALEK 81 (271)
T ss_pred cCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEecCchHHHHHHHHHHHhcC---CceEEeCCCCCHHHHHHHHHHHHH
Confidence 3457899999875 4 4456666799999998877544333333222221 1346788988721
Q ss_pred CCCceeEEEeCCcc
Q 026903 171 PTELFDLIFDYTFF 184 (231)
Q Consensus 171 ~~~~fD~i~~~~~~ 184 (231)
.-+..|+++.+...
T Consensus 82 ~~g~iD~lVnnAG~ 95 (271)
T PRK06505 82 KWGKLDFVVHAIGF 95 (271)
T ss_pred HhCCCCEEEECCcc
Confidence 12578999887553
No 430
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=88.01 E-value=3 Score=34.51 Aligned_cols=92 Identities=15% Similarity=0.176 Sum_probs=55.3
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE-ccCCCCCCCCceeEEEeCCc
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK-ADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~-~d~~~~~~~~~fD~i~~~~~ 183 (231)
..+.+|+-+|+|. |..+...++ .|.+|+.+|.++...+.+... + .++.. .++.+.. ..+|+|+....
T Consensus 150 l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~v~~r~~~~~~~~~~~----G----~~~~~~~~l~~~l--~~aDiVI~t~p 219 (296)
T PRK08306 150 IHGSNVLVLGFGRTGMTLARTLKALGANVTVGARKSAHLARITEM----G----LSPFHLSELAEEV--GKIDIIFNTIP 219 (296)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHc----C----CeeecHHHHHHHh--CCCCEEEECCC
Confidence 4578999999985 443333333 788999999998766555432 1 22221 1122222 36899996421
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccC
Q 026903 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPI 216 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~ 216 (231)
.. -+-+...+.++||++++=..+.+
T Consensus 220 -----~~---~i~~~~l~~~~~g~vIIDla~~p 244 (296)
T PRK08306 220 -----AL---VLTKEVLSKMPPEALIIDLASKP 244 (296)
T ss_pred -----hh---hhhHHHHHcCCCCcEEEEEccCC
Confidence 11 12345667889999877666655
No 431
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=88.00 E-value=1.9 Score=33.00 Aligned_cols=86 Identities=15% Similarity=0.153 Sum_probs=55.8
Q ss_pred CCCchHHHHhcC----CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--C--CceeEEEeCCcccccC
Q 026903 117 CGTGYDVVAMAS----PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--T--ELFDLIFDYTFFCAIE 188 (231)
Q Consensus 117 cG~G~~~~~l~~----~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~--~~fD~i~~~~~~~~~~ 188 (231)
|.+|...-.+++ +|+.|+++=-++.-+... ..+.+.+.|++++.. . ..||+|++..-...-+
T Consensus 7 gAsG~~Gs~i~~EA~~RGHeVTAivRn~~K~~~~----------~~~~i~q~Difd~~~~a~~l~g~DaVIsA~~~~~~~ 76 (211)
T COG2910 7 GASGKAGSRILKEALKRGHEVTAIVRNASKLAAR----------QGVTILQKDIFDLTSLASDLAGHDAVISAFGAGASD 76 (211)
T ss_pred ecCchhHHHHHHHHHhCCCeeEEEEeChHhcccc----------ccceeecccccChhhhHhhhcCCceEEEeccCCCCC
Confidence 456666555544 999999999887643321 247789999999543 2 3799999865544222
Q ss_pred -hHHHHHHHHHHHhhcCCCc--EEEEE
Q 026903 189 -PEMRAAWAQKIKDFLKPDG--ELITL 212 (231)
Q Consensus 189 -~~~~~~~l~~~~~~L~pgG--~l~~~ 212 (231)
.+...+.++.+...|+.-| +|+++
T Consensus 77 ~~~~~~k~~~~li~~l~~agv~RllVV 103 (211)
T COG2910 77 NDELHSKSIEALIEALKGAGVPRLLVV 103 (211)
T ss_pred hhHHHHHHHHHHHHHHhhcCCeeEEEE
Confidence 2334556777888887744 35543
No 432
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=87.92 E-value=3.5 Score=33.86 Aligned_cols=95 Identities=16% Similarity=0.100 Sum_probs=57.4
Q ss_pred CcEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC----------CC---------CCceEEEEccCCC
Q 026903 110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSL----------PN---------AKFVSFLKADFFT 168 (231)
Q Consensus 110 ~~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~----------~~---------~~~i~~~~~d~~~ 168 (231)
.+|.-+|+|. | ..+..++..|.+|+.+|.+++.++.+++..... +. ..++.+. .|. +
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~l~d~~~~~l~~~~~~i~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~ 81 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVTIVDVSEEILKNAMELIESGPYGLRNLVEKGKMSEDEAKAIMARIRTS-TSY-E 81 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHhhhhhHHHHHHcCCCCHHHHHHHHhCcEee-CCH-H
Confidence 4788899985 3 455666678899999999999998765533221 00 0111111 121 1
Q ss_pred CCCCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 169 WCPTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 169 ~~~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
. -...|+|+..-. .. .+....+++++...++|+.+++.
T Consensus 82 ~--~~~aDlVieav~-e~--~~~k~~~~~~l~~~~~~~~il~S 119 (291)
T PRK06035 82 S--LSDADFIVEAVP-EK--LDLKRKVFAELERNVSPETIIAS 119 (291)
T ss_pred H--hCCCCEEEEcCc-Cc--HHHHHHHHHHHHhhCCCCeEEEE
Confidence 1 134688874321 11 13467788888888888886653
No 433
>PRK06940 short chain dehydrogenase; Provisional
Probab=87.87 E-value=12 Score=30.38 Aligned_cols=97 Identities=13% Similarity=0.030 Sum_probs=56.1
Q ss_pred cEEEecCCCchHHHHhcC---CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----------CCCceeE
Q 026903 111 RALVPGCGTGYDVVAMAS---PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------PTELFDL 177 (231)
Q Consensus 111 ~vLDiGcG~G~~~~~l~~---~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~~fD~ 177 (231)
.+|--|+ |..+..+++ .|.+|+.++.++..++...+.....+ .++.++.+|+.+.. ..+.+|+
T Consensus 4 ~~lItGa--~gIG~~la~~l~~G~~Vv~~~r~~~~~~~~~~~l~~~~--~~~~~~~~Dv~d~~~i~~~~~~~~~~g~id~ 79 (275)
T PRK06940 4 VVVVIGA--GGIGQAIARRVGAGKKVLLADYNEENLEAAAKTLREAG--FDVSTQEVDVSSRESVKALAATAQTLGPVTG 79 (275)
T ss_pred EEEEECC--ChHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEeecCCHHHHHHHHHHHHhcCCCCE
Confidence 4555564 345544443 68899999998876665544443222 35788899988721 1146899
Q ss_pred EEeCCcccccChH----------HHHHHHHHHHhhcCCCcEEEE
Q 026903 178 IFDYTFFCAIEPE----------MRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 178 i~~~~~~~~~~~~----------~~~~~l~~~~~~L~pgG~l~~ 211 (231)
++.+........+ ....+++.+...++++|.+++
T Consensus 80 li~nAG~~~~~~~~~~~~~vN~~g~~~l~~~~~~~m~~~g~iv~ 123 (275)
T PRK06940 80 LVHTAGVSPSQASPEAILKVDLYGTALVLEEFGKVIAPGGAGVV 123 (275)
T ss_pred EEECCCcCCchhhHHHHHHHhhHHHHHHHHHHHHHHhhCCCEEE
Confidence 9877654321111 112345556666666665443
No 434
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=87.83 E-value=1.7 Score=36.03 Aligned_cols=96 Identities=15% Similarity=0.153 Sum_probs=63.7
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCcc
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~~ 184 (231)
++.+|.-+|.|. |..+..++- .|+.|+.+|+|..-+......+. .+++...-+..+.. .-...|+++..-.+
T Consensus 167 ~~~kv~iiGGGvvgtnaAkiA~glgA~Vtild~n~~rl~~ldd~f~-----~rv~~~~st~~~iee~v~~aDlvIgaVLI 241 (371)
T COG0686 167 LPAKVVVLGGGVVGTNAAKIAIGLGADVTILDLNIDRLRQLDDLFG-----GRVHTLYSTPSNIEEAVKKADLVIGAVLI 241 (371)
T ss_pred CCccEEEECCccccchHHHHHhccCCeeEEEecCHHHHhhhhHhhC-----ceeEEEEcCHHHHHHHhhhccEEEEEEEe
Confidence 346888899986 777777776 78899999999888777766553 24666555444421 11368998854322
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEE
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~ 210 (231)
.-- ....-..+++...||||++++
T Consensus 242 pga--kaPkLvt~e~vk~MkpGsViv 265 (371)
T COG0686 242 PGA--KAPKLVTREMVKQMKPGSVIV 265 (371)
T ss_pred cCC--CCceehhHHHHHhcCCCcEEE
Confidence 211 111234677889999999876
No 435
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=87.82 E-value=3.1 Score=34.27 Aligned_cols=96 Identities=21% Similarity=0.064 Sum_probs=52.5
Q ss_pred cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc-CCCCCceEEEEccCCC-CCC-CCceeEEEeCCccc
Q 026903 111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSS-LPNAKFVSFLKADFFT-WCP-TELFDLIFDYTFFC 185 (231)
Q Consensus 111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~-~~~~~~i~~~~~d~~~-~~~-~~~fD~i~~~~~~~ 185 (231)
+|+-+|+|. | .++..|++.|..|+.++. ++.++..++.-.. ........+ ...... ... ...+|+|+..--
T Consensus 2 kI~IiG~G~iG~~~a~~L~~~g~~V~~~~r-~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~~~~~~d~vilavk-- 77 (305)
T PRK12921 2 RIAVVGAGAVGGTFGGRLLEAGRDVTFLVR-PKRAKALRERGLVIRSDHGDAVV-PGPVITDPEELTGPFDLVILAVK-- 77 (305)
T ss_pred eEEEECCCHHHHHHHHHHHHCCCceEEEec-HHHHHHHHhCCeEEEeCCCeEEe-cceeecCHHHccCCCCEEEEEec--
Confidence 688889987 3 355566678889999998 6666655542100 000001110 111111 111 146888874322
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
......+++.+...+.++..++...
T Consensus 78 ---~~~~~~~~~~l~~~~~~~~~ii~~~ 102 (305)
T PRK12921 78 ---AYQLDAAIPDLKPLVGEDTVIIPLQ 102 (305)
T ss_pred ---ccCHHHHHHHHHhhcCCCCEEEEee
Confidence 2234567788888888887666543
No 436
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=87.75 E-value=2.5 Score=36.31 Aligned_cols=69 Identities=25% Similarity=0.157 Sum_probs=48.7
Q ss_pred CcEEEecCCC-chHHHHh-cCCC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----CCceeEEEeCC
Q 026903 110 GRALVPGCGT-GYDVVAM-ASPE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----TELFDLIFDYT 182 (231)
Q Consensus 110 ~~vLDiGcG~-G~~~~~l-~~~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----~~~fD~i~~~~ 182 (231)
++||-||||. |+.+... ++.+ .+|+..|.+.+..+.+...... +++.++.|+.+... -..+|+|+...
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V~iAdRs~~~~~~i~~~~~~-----~v~~~~vD~~d~~al~~li~~~d~VIn~~ 76 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEVTIADRSKEKCARIAELIGG-----KVEALQVDAADVDALVALIKDFDLVINAA 76 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceEEEEeCCHHHHHHHHhhccc-----cceeEEecccChHHHHHHHhcCCEEEEeC
Confidence 5899999965 5444433 4566 6999999999888887765432 58899999988421 13469988654
Q ss_pred c
Q 026903 183 F 183 (231)
Q Consensus 183 ~ 183 (231)
.
T Consensus 77 p 77 (389)
T COG1748 77 P 77 (389)
T ss_pred C
Confidence 3
No 437
>cd08300 alcohol_DH_class_III class III alcohol dehydrogenases. Members identified as glutathione-dependent formaldehyde dehydrogenase(FDH), a member of the zinc dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. MDH family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes or ketones. Like many zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), these FDHs form dimers, with 4 zinc ions per dimer. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dim
Probab=87.74 E-value=1 Score=38.21 Aligned_cols=97 Identities=14% Similarity=0.167 Sum_probs=58.7
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc--cCCC-C--CCCCceeEE
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA--DFFT-W--CPTELFDLI 178 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~--d~~~-~--~~~~~fD~i 178 (231)
.++.+||-.|+|. |..+..+++ .|. +|+++|.+++..+.+++.-.. .-+..... ++.+ . ...+.+|+|
T Consensus 185 ~~g~~VlV~G~G~vG~~a~~~ak~~G~~~vi~~~~~~~~~~~~~~lGa~----~~i~~~~~~~~~~~~v~~~~~~g~d~v 260 (368)
T cd08300 185 EPGSTVAVFGLGAVGLAVIQGAKAAGASRIIGIDINPDKFELAKKFGAT----DCVNPKDHDKPIQQVLVEMTDGGVDYT 260 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHcCCC----EEEcccccchHHHHHHHHHhCCCCcEE
Confidence 4567899888764 566666666 777 799999999988888653211 00111111 1111 0 112368999
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEcc
Q 026903 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFP 215 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~ 215 (231)
+.... . ...+....+.|+++ |.++.....
T Consensus 261 id~~g--~------~~~~~~a~~~l~~~~G~~v~~g~~ 290 (368)
T cd08300 261 FECIG--N------VKVMRAALEACHKGWGTSVIIGVA 290 (368)
T ss_pred EECCC--C------hHHHHHHHHhhccCCCeEEEEccC
Confidence 85321 1 13466778889887 988877654
No 438
>PF05050 Methyltransf_21: Methyltransferase FkbM domain; InterPro: IPR007744 This entry contains proteins of unknown function.; PDB: 2PY6_A.
Probab=87.73 E-value=1.4 Score=32.38 Aligned_cols=36 Identities=19% Similarity=0.180 Sum_probs=24.0
Q ss_pred EecCCCc--hHHHHhc----CCCCeEEEEeCChHHHHHHHHH
Q 026903 114 VPGCGTG--YDVVAMA----SPERYVVGLEISDIAIKKAEEL 149 (231)
Q Consensus 114 DiGcG~G--~~~~~l~----~~~~~v~~iD~s~~~i~~a~~~ 149 (231)
|+|++.| .....++ .++.+|+++|+++..++..+++
T Consensus 1 DvGA~~G~~~~~~~~~~~~~~~~~~v~~~Ep~p~~~~~l~~~ 42 (167)
T PF05050_consen 1 DVGANIGFWSSTVYFLEKKCGPGGRVHAFEPNPSNFEKLKRN 42 (167)
T ss_dssp EES-TTS--HHHHHHHHHHTS--SEEEEE---HHHHHHHHHH
T ss_pred CcccCCChhHHHHHHHHHHcCCCCEEEEEECCHHHHHHHhHH
Confidence 8999999 5555443 2567999999999999998888
No 439
>cd05284 arabinose_DH_like D-arabinose dehydrogenase. This group contains arabinose dehydrogenase (AraDH) and related alcohol dehydrogenases. AraDH is a member of the medium chain dehydrogenase/reductase family and catalyzes the NAD(P)-dependent oxidation of D-arabinose and other pentoses, the initial step in the metabolism of d-arabinose into 2-oxoglutarate. Like the alcohol dehydrogenases, AraDH binds a zinc in the catalytic cleft as well as a distal structural zinc. AraDH forms homotetramers as a dimer of dimers. AraDH replaces a conserved catalytic His with replace with Arg, compared to the canonical ADH site. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol d
Probab=87.68 E-value=1.2 Score=37.12 Aligned_cols=95 Identities=20% Similarity=0.198 Sum_probs=55.5
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc----CCCCCCCCceeEEEe
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD----FFTWCPTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d----~~~~~~~~~fD~i~~ 180 (231)
++.+||-.|+|. |..+..+++ .| .++++++.+++..+.+++.- . +.+--...+ +........+|+|+.
T Consensus 167 ~~~~vlI~g~~~vg~~~~~~a~~~g~~~v~~~~~~~~~~~~~~~~g----~-~~~~~~~~~~~~~i~~~~~~~~~dvvld 241 (340)
T cd05284 167 PGSTVVVIGVGGLGHIAVQILRALTPATVIAVDRSEEALKLAERLG----A-DHVLNASDDVVEEVRELTGGRGADAVID 241 (340)
T ss_pred CCCEEEEEcCcHHHHHHHHHHHHhCCCcEEEEeCCHHHHHHHHHhC----C-cEEEcCCccHHHHHHHHhCCCCCCEEEE
Confidence 457888888654 444445555 56 68999998888777765421 1 111111111 111222346999985
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
...- ...+....+.|+++|.++.....
T Consensus 242 ~~g~--------~~~~~~~~~~l~~~g~~i~~g~~ 268 (340)
T cd05284 242 FVGS--------DETLALAAKLLAKGGRYVIVGYG 268 (340)
T ss_pred cCCC--------HHHHHHHHHHhhcCCEEEEEcCC
Confidence 3221 13467788899999998876543
No 440
>PRK12744 short chain dehydrogenase; Provisional
Probab=87.64 E-value=12 Score=29.62 Aligned_cols=102 Identities=12% Similarity=0.084 Sum_probs=56.8
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCC----hHHHHHHHHHhccCCCCCceEEEEccCCCCC----------
Q 026903 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEIS----DIAIKKAEELSSSLPNAKFVSFLKADFFTWC---------- 170 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s----~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---------- 170 (231)
.++++|-.|++.| .++..|++.|.+++.++.+ .+..+...+..... ..++.++.+|+.+..
T Consensus 7 ~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~~~~~~~~~~~~~~~~~l~~~--~~~~~~~~~D~~~~~~~~~~~~~~~ 84 (257)
T PRK12744 7 KGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIHYNSAASKADAEETVAAVKAA--GAKAVAFQADLTTAAAVEKLFDDAK 84 (257)
T ss_pred CCcEEEEECCCchHHHHHHHHHHHCCCcEEEEecCCccchHHHHHHHHHHHHh--CCcEEEEecCcCCHHHHHHHHHHHH
Confidence 4578998887655 2334444578887777543 22233222222221 135888999998721
Q ss_pred -CCCceeEEEeCCccc------ccChHHH-----------HHHHHHHHhhcCCCcEEEE
Q 026903 171 -PTELFDLIFDYTFFC------AIEPEMR-----------AAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 171 -~~~~fD~i~~~~~~~------~~~~~~~-----------~~~l~~~~~~L~pgG~l~~ 211 (231)
..+..|+++.+.... ..+.+.. ..+++.+...++++|.+++
T Consensus 85 ~~~~~id~li~~ag~~~~~~~~~~~~~~~~~~~~~N~~~~~~~~~~~~~~~~~~~~iv~ 143 (257)
T PRK12744 85 AAFGRPDIAINTVGKVLKKPIVEISEAEYDEMFAVNSKSAFFFIKEAGRHLNDNGKIVT 143 (257)
T ss_pred HhhCCCCEEEECCcccCCCCcccCCHHHHHHHHhhhhhHHHHHHHHHHHhhccCCCEEE
Confidence 114689998775432 2222221 2345666677777776654
No 441
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=87.60 E-value=1.4 Score=38.88 Aligned_cols=90 Identities=16% Similarity=0.001 Sum_probs=55.4
Q ss_pred CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCc
Q 026903 106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~ 183 (231)
.+.+++|+-+|+|. |......++ .|.+|+.+|.++.....+... + .++ .++.+.. ...|+|++...
T Consensus 251 ~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~ViV~e~dp~~a~~A~~~----G----~~~--~~leell--~~ADIVI~atG 318 (476)
T PTZ00075 251 MIAGKTVVVCGYGDVGKGCAQALRGFGARVVVTEIDPICALQAAME----G----YQV--VTLEDVV--ETADIFVTATG 318 (476)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCchhHHHHHhc----C----cee--ccHHHHH--hcCCEEEECCC
Confidence 45678999999997 544444443 788999999887654333321 1 121 1222322 35799986532
Q ss_pred ccccChHHHHHHH-HHHHhhcCCCcEEEEEEcc
Q 026903 184 FCAIEPEMRAAWA-QKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 184 ~~~~~~~~~~~~l-~~~~~~L~pgG~l~~~~~~ 215 (231)
-.+ ++ ......||||++|+-+...
T Consensus 319 t~~--------iI~~e~~~~MKpGAiLINvGr~ 343 (476)
T PTZ00075 319 NKD--------IITLEHMRRMKNNAIVGNIGHF 343 (476)
T ss_pred ccc--------ccCHHHHhccCCCcEEEEcCCC
Confidence 111 23 3677889999998766554
No 442
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=87.41 E-value=3.5 Score=34.12 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=55.0
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcc
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFF 184 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~ 184 (231)
.++.+||-.|||. |..+..+++ .|.+++.++.+++..+.+++ ... + .++..+ .. +...+|+++.....
T Consensus 166 ~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~~~~~~~~~~-~g~----~--~~~~~~--~~-~~~~vD~vi~~~~~ 235 (329)
T cd08298 166 KPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRSGEHQELARE-LGA----D--WAGDSD--DL-PPEPLDAAIIFAPV 235 (329)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCChHHHHHHHH-hCC----c--EEeccC--cc-CCCcccEEEEcCCc
Confidence 3456788787764 444444555 78899999998887777744 211 0 111111 11 23468888743111
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
...+....+.|+++|.++....
T Consensus 236 --------~~~~~~~~~~l~~~G~~v~~g~ 257 (329)
T cd08298 236 --------GALVPAALRAVKKGGRVVLAGI 257 (329)
T ss_pred --------HHHHHHHHHHhhcCCEEEEEcC
Confidence 1357788999999999887654
No 443
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=87.40 E-value=1.7 Score=31.63 Aligned_cols=98 Identities=15% Similarity=0.139 Sum_probs=55.3
Q ss_pred EEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCC-CCceEEEEcc-CCCC-CCCCceeEEEeCCcccc
Q 026903 112 ALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPN-AKFVSFLKAD-FFTW-CPTELFDLIFDYTFFCA 186 (231)
Q Consensus 112 vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~-~~~i~~~~~d-~~~~-~~~~~fD~i~~~~~~~~ 186 (231)
|+-+|+|. | .++..|.+.|..|+.+.-.+ .++..++.--.... ..+..+.... .... .....+|+|+..-=-
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~D~viv~vKa-- 77 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRSP-RLEAIKEQGLTITGPDGDETVQPPIVISAPSADAGPYDLVIVAVKA-- 77 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESHH-HHHHHHHHCEEEEETTEEEEEEEEEEESSHGHHHSTESEEEE-SSG--
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEccc-cHHhhhheeEEEEecccceecccccccCcchhccCCCcEEEEEecc--
Confidence 56678876 3 44555556889999999988 56654443211100 0011111111 1111 134579999853211
Q ss_pred cChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 187 IEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
.+....++.+...+.+++.+++..-.
T Consensus 78 ---~~~~~~l~~l~~~~~~~t~iv~~qNG 103 (151)
T PF02558_consen 78 ---YQLEQALQSLKPYLDPNTTIVSLQNG 103 (151)
T ss_dssp ---GGHHHHHHHHCTGEETTEEEEEESSS
T ss_pred ---cchHHHHHHHhhccCCCcEEEEEeCC
Confidence 23356889999999999887765543
No 444
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=87.26 E-value=3.2 Score=34.67 Aligned_cols=92 Identities=16% Similarity=0.135 Sum_probs=60.7
Q ss_pred CCCCcEEEecC--CCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEE---c-cCCC----CCCCCce
Q 026903 107 LPKGRALVPGC--GTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLK---A-DFFT----WCPTELF 175 (231)
Q Consensus 107 ~~~~~vLDiGc--G~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~---~-d~~~----~~~~~~f 175 (231)
.++.+||-.|+ |.|..+..+++ .|.++++++.+++..+.+++.+.. + .++. . +..+ .. ...+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~~~~~~~~~~~lGa----~--~vi~~~~~~~~~~~i~~~~-~~gv 222 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGSDEKVDLLKNKLGF----D--DAFNYKEEPDLDAALKRYF-PNGI 222 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHhcCC----c--eeEEcCCcccHHHHHHHhC-CCCc
Confidence 45679998886 45777777777 788999999999888888763321 1 1121 1 2111 11 2468
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
|+|+.... ...+....++|+++|.++....
T Consensus 223 d~v~d~~g---------~~~~~~~~~~l~~~G~iv~~G~ 252 (338)
T cd08295 223 DIYFDNVG---------GKMLDAVLLNMNLHGRIAACGM 252 (338)
T ss_pred EEEEECCC---------HHHHHHHHHHhccCcEEEEecc
Confidence 99984321 1246778899999999987654
No 445
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=87.22 E-value=4 Score=34.49 Aligned_cols=95 Identities=22% Similarity=0.126 Sum_probs=54.9
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-CCCceeEEEeCCcc
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-PTELFDLIFDYTFF 184 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-~~~~fD~i~~~~~~ 184 (231)
++.+||-.|+|. |..+..+++ .|.+++.++.+++....+.+.+.. +. .+...+..... ....+|+++....-
T Consensus 180 ~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~~~~~~~~~~~~Ga----~~-~i~~~~~~~~~~~~~~~D~vid~~g~ 254 (357)
T PLN02514 180 SGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSSDKKREEALEHLGA----DD-YLVSSDAAEMQEAADSLDYIIDTVPV 254 (357)
T ss_pred CCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHhcCC----cE-EecCCChHHHHHhcCCCcEEEECCCc
Confidence 567888887764 666666776 777888888887765555443321 11 11111100100 01258888843211
Q ss_pred cccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 185 CAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 185 ~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
...+..+.++|+++|+++.....
T Consensus 255 --------~~~~~~~~~~l~~~G~iv~~G~~ 277 (357)
T PLN02514 255 --------FHPLEPYLSLLKLDGKLILMGVI 277 (357)
T ss_pred --------hHHHHHHHHHhccCCEEEEECCC
Confidence 12456678899999998876643
No 446
>cd08279 Zn_ADH_class_III Class III alcohol dehydrogenase. Glutathione-dependent formaldehyde dehydrogenases (FDHs, Class III ADH) are members of the zinc-dependent/medium chain alcohol dehydrogenase family. FDH converts formaldehyde and NAD(P) to formate and NAD(P)H. The initial step in this process the spontaneous formation of a S-(hydroxymethyl)glutathione adduct from formaldehyde and glutathione, followed by FDH-mediated oxidation (and detoxification) of the adduct to S-formylglutathione. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. Class III ADH are also known as glutathione-dependent formaldehyde dehydrogenase (FDH), which convert aldehydes to corresponding carboxylic acid and alcohol. ADH is a me
Probab=87.00 E-value=1.4 Score=37.25 Aligned_cols=92 Identities=16% Similarity=0.221 Sum_probs=56.1
Q ss_pred CCCcEEEecCC-CchHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCC----CCCCCCceeE
Q 026903 108 PKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFF----TWCPTELFDL 177 (231)
Q Consensus 108 ~~~~vLDiGcG-~G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~----~~~~~~~fD~ 177 (231)
++.+||-.|+| .|..+..+++ .|.. |++++.++...+.+++.- . ..++.. +.. .......+|+
T Consensus 182 ~g~~vLI~g~g~vG~a~i~lak~~G~~~Vi~~~~~~~~~~~~~~~g-~------~~vv~~~~~~~~~~l~~~~~~~~vd~ 254 (363)
T cd08279 182 PGDTVAVIGCGGVGLNAIQGARIAGASRIIAVDPVPEKLELARRFG-A------THTVNASEDDAVEAVRDLTDGRGADY 254 (363)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCcEEEEcCCHHHHHHHHHhC-C------eEEeCCCCccHHHHHHHHcCCCCCCE
Confidence 45788888775 3666666666 7775 999999888777765321 1 112211 111 1222346898
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
++....- ...+....+.|+++|+++....
T Consensus 255 vld~~~~--------~~~~~~~~~~l~~~G~~v~~g~ 283 (363)
T cd08279 255 AFEAVGR--------AATIRQALAMTRKGGTAVVVGM 283 (363)
T ss_pred EEEcCCC--------hHHHHHHHHHhhcCCeEEEEec
Confidence 8843221 1246778889999999876643
No 447
>PRK06128 oxidoreductase; Provisional
Probab=87.00 E-value=8.4 Score=31.60 Aligned_cols=104 Identities=15% Similarity=0.108 Sum_probs=59.5
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChH--HHHHHHHHhccCCCCCceEEEEccCCCCCC----------
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDI--AIKKAEELSSSLPNAKFVSFLKADFFTWCP---------- 171 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~--~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~---------- 171 (231)
+.++++|-.|++.| .++..|++.|.+|+.+..+.. ..+...+.....+ .++.++.+|+.+...
T Consensus 53 l~~k~vlITGas~gIG~~~a~~l~~~G~~V~i~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~v~~~~~~~~~ 130 (300)
T PRK06128 53 LQGRKALITGADSGIGRATAIAFAREGADIALNYLPEEEQDAAEVVQLIQAEG--RKAVALPGDLKDEAFCRQLVERAVK 130 (300)
T ss_pred cCCCEEEEecCCCcHHHHHHHHHHHcCCEEEEEeCCcchHHHHHHHHHHHHcC--CeEEEEecCCCCHHHHHHHHHHHHH
Confidence 44578999997554 234445558888887765432 2222222222221 357788999987211
Q ss_pred -CCceeEEEeCCcccc-------cChHHH-----------HHHHHHHHhhcCCCcEEEEE
Q 026903 172 -TELFDLIFDYTFFCA-------IEPEMR-----------AAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 172 -~~~fD~i~~~~~~~~-------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~ 212 (231)
-+..|+++.+..... ++.+.. ..+++.+...|+++|.++..
T Consensus 131 ~~g~iD~lV~nAg~~~~~~~~~~~~~~~~~~~~~~N~~g~~~l~~~~~~~~~~~~~iv~~ 190 (300)
T PRK06128 131 ELGGLDILVNIAGKQTAVKDIADITTEQFDATFKTNVYAMFWLCKAAIPHLPPGASIINT 190 (300)
T ss_pred HhCCCCEEEECCcccCCCCChhhCCHHHHHHHHHHHhHHHHHHHHHHHHhcCcCCEEEEE
Confidence 136899988764321 122211 24556666777888876654
No 448
>cd08291 ETR_like_1 2-enoyl thioester reductase (ETR) like proteins, child 1. 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordination sites characteristic of the 2-enoyl thioester reductase (ETR) like proteins. ETR catalyzes the NADPH-dependent dependent conversion of trans-2-enoyl acyl carrier protein/coenzyme A (ACP/CoA) to acyl-(ACP/CoA) in fatty acid synthesis. 2-enoyl thioester reductase activity has been linked in Candida tropicalis as essential in maintaining mitiochondrial respiratory function. This ETR family is a part of the medium chain dehydrogenase/reductase family, but lack the zinc coordin
Probab=86.87 E-value=1.1 Score=37.23 Aligned_cols=92 Identities=13% Similarity=0.113 Sum_probs=54.7
Q ss_pred CCCcEEEe--cCC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC----CCCCCcee
Q 026903 108 PKGRALVP--GCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT----WCPTELFD 176 (231)
Q Consensus 108 ~~~~vLDi--GcG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~----~~~~~~fD 176 (231)
++..+|-+ |+| .|..+..+++ .|.++++++.+++..+.+++.- . -.++.. ++.+ ......+|
T Consensus 142 ~~~~vlv~~~g~g~vG~~a~q~a~~~G~~vi~~~~~~~~~~~~~~~g----~---~~~i~~~~~~~~~~v~~~~~~~~~d 214 (324)
T cd08291 142 EGAKAVVHTAAASALGRMLVRLCKADGIKVINIVRRKEQVDLLKKIG----A---EYVLNSSDPDFLEDLKELIAKLNAT 214 (324)
T ss_pred CCCcEEEEccCccHHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHcC----C---cEEEECCCccHHHHHHHHhCCCCCc
Confidence 44455554 443 3666677776 7889999999998888887621 1 112221 1111 12234689
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
+++.... .. .+....+.|+++|+++.....
T Consensus 215 ~vid~~g-----~~----~~~~~~~~l~~~G~~v~~g~~ 244 (324)
T cd08291 215 IFFDAVG-----GG----LTGQILLAMPYGSTLYVYGYL 244 (324)
T ss_pred EEEECCC-----cH----HHHHHHHhhCCCCEEEEEEec
Confidence 9985322 11 234457788999998876643
No 449
>PRK07819 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=86.77 E-value=7.1 Score=32.11 Aligned_cols=97 Identities=13% Similarity=0.078 Sum_probs=60.6
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhcc-------CCCC---------CceEEEEccCCCCCC
Q 026903 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSS-------LPNA---------KFVSFLKADFFTWCP 171 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~-------~~~~---------~~i~~~~~d~~~~~~ 171 (231)
.+|--||+|. +..+..++..|..|+..|.+++.++.+.+++.. .+.. .++++ ..|. +.
T Consensus 6 ~~V~ViGaG~mG~~iA~~~a~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~l~~-~~~~-~~-- 81 (286)
T PRK07819 6 QRVGVVGAGQMGAGIAEVCARAGVDVLVFETTEELATAGRNRIEKSLERAVSRGKLTERERDAALARLRF-TTDL-GD-- 81 (286)
T ss_pred cEEEEEcccHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHHHHHHHHHHHhcccCChhhHHHHHhCeEe-eCCH-HH--
Confidence 4788999995 455666677899999999999999886654322 1100 12221 2222 11
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhc-CCCcEEEEEE
Q 026903 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFL-KPDGELITLM 213 (231)
Q Consensus 172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L-~pgG~l~~~~ 213 (231)
-...|+|+-. +.+.+ +.+..++..+...+ +|+.++...+
T Consensus 82 ~~~~d~ViEa-v~E~~--~~K~~l~~~l~~~~~~~~~il~snT 121 (286)
T PRK07819 82 FADRQLVIEA-VVEDE--AVKTEIFAELDKVVTDPDAVLASNT 121 (286)
T ss_pred hCCCCEEEEe-cccCH--HHHHHHHHHHHHhhCCCCcEEEECC
Confidence 1357888743 23322 56677888888888 7787765533
No 450
>PRK07035 short chain dehydrogenase; Provisional
Probab=86.66 E-value=3.9 Score=32.38 Aligned_cols=75 Identities=13% Similarity=0.015 Sum_probs=50.7
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
+.++++|-.|++.| ..+..|++.|.+|+.++.++...+...+.....+ .++.++.+|+.+... -
T Consensus 6 l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 83 (252)
T PRK07035 6 LTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSSRKLDGCQAVADAIVAAG--GKAEALACHIGEMEQIDALFAHIRERH 83 (252)
T ss_pred cCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHHc
Confidence 44578899998876 3445556689999999998877666555443322 347788888877211 1
Q ss_pred CceeEEEeCCc
Q 026903 173 ELFDLIFDYTF 183 (231)
Q Consensus 173 ~~fD~i~~~~~ 183 (231)
+.+|+++.+..
T Consensus 84 ~~id~li~~ag 94 (252)
T PRK07035 84 GRLDILVNNAA 94 (252)
T ss_pred CCCCEEEECCC
Confidence 35899887654
No 451
>PRK05867 short chain dehydrogenase; Provisional
Probab=86.63 E-value=3.7 Score=32.62 Aligned_cols=76 Identities=18% Similarity=0.029 Sum_probs=52.5
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
+.++++|-.|++.| ..+..|++.|.+|+.++.+++.++...+.+...+ .++.++.+|+.+... -
T Consensus 7 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~l~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~ 84 (253)
T PRK05867 7 LHGKRALITGASTGIGKRVALAYVEAGAQVAIAARHLDALEKLADEIGTSG--GKVVPVCCDVSQHQQVTSMLDQVTAEL 84 (253)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEcCCHHHHHHHHHHHHhcC--CeEEEEEccCCCHHHHHHHHHHHHHHh
Confidence 45678999998765 3345556689999999999887766655544332 357788999887211 1
Q ss_pred CceeEEEeCCcc
Q 026903 173 ELFDLIFDYTFF 184 (231)
Q Consensus 173 ~~fD~i~~~~~~ 184 (231)
+..|+++.+...
T Consensus 85 g~id~lv~~ag~ 96 (253)
T PRK05867 85 GGIDIAVCNAGI 96 (253)
T ss_pred CCCCEEEECCCC
Confidence 478999876543
No 452
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=86.47 E-value=3.9 Score=34.00 Aligned_cols=97 Identities=18% Similarity=0.070 Sum_probs=52.5
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-CCCCceEEEEccCCC-CCCCCceeEEEeCCccc
Q 026903 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-PNAKFVSFLKADFFT-WCPTELFDLIFDYTFFC 185 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-~~~~~i~~~~~d~~~-~~~~~~fD~i~~~~~~~ 185 (231)
++|+-+|+|. |.++..|++.|..|+.+..++. +..+++.... ....+..+....... ......+|+|+..--.+
T Consensus 6 m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~D~vilavK~~ 83 (313)
T PRK06249 6 PRIGIIGTGAIGGFYGAMLARAGFDVHFLLRSDY--EAVRENGLQVDSVHGDFHLPPVQAYRSAEDMPPCDWVLVGLKTT 83 (313)
T ss_pred cEEEEECCCHHHHHHHHHHHHCCCeEEEEEeCCH--HHHHhCCeEEEeCCCCeeecCceEEcchhhcCCCCEEEEEecCC
Confidence 6899999996 5667777778888888887652 2222221000 000111111111111 11224689988432211
Q ss_pred ccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 186 AIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 186 ~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
+...+++.+...+++++.++...
T Consensus 84 -----~~~~~~~~l~~~~~~~~~iv~lq 106 (313)
T PRK06249 84 -----ANALLAPLIPQVAAPDAKVLLLQ 106 (313)
T ss_pred -----ChHhHHHHHhhhcCCCCEEEEec
Confidence 12356777788888888776554
No 453
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=86.46 E-value=2.5 Score=35.26 Aligned_cols=93 Identities=20% Similarity=0.170 Sum_probs=56.8
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEc---cCCC-CCCCCceeEEEeC
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA---DFFT-WCPTELFDLIFDY 181 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~---d~~~-~~~~~~fD~i~~~ 181 (231)
++.+||-.|+|. |..+..+++ .|.+++.++.+++-.+.+++.- . + .++.. +... ......+|+++..
T Consensus 163 ~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~~~~~~~~~~~g-~----~--~~i~~~~~~~~~~~~~~~~~d~vi~~ 235 (333)
T cd08296 163 PGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRGSDKADLARKLG-A----H--HYIDTSKEDVAEALQELGGAKLILAT 235 (333)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCChHHHHHHHHcC-C----c--EEecCCCccHHHHHHhcCCCCEEEEC
Confidence 457899988654 555566666 7889999999988888775522 1 1 11111 1111 1111358888843
Q ss_pred CcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 182 TFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 182 ~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
.. . ...+....+.|+++|.++.....
T Consensus 236 ~g----~----~~~~~~~~~~l~~~G~~v~~g~~ 261 (333)
T cd08296 236 AP----N----AKAISALVGGLAPRGKLLILGAA 261 (333)
T ss_pred CC----c----hHHHHHHHHHcccCCEEEEEecC
Confidence 11 0 13467788899999998876543
No 454
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.37 E-value=3.6 Score=34.29 Aligned_cols=98 Identities=17% Similarity=0.233 Sum_probs=60.6
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc-cCCCCC-------CCCce
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA-DFFTWC-------PTELF 175 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~-d~~~~~-------~~~~f 175 (231)
.++..+.-+|+|. |.....-++ .|+ +++|+|+++.-.+.|++--.. +|++- |...+. -++.+
T Consensus 191 ~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgvDiN~~Kf~~ak~fGaT-------e~iNp~d~~~~i~evi~EmTdgGv 263 (375)
T KOG0022|consen 191 EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGVDINPDKFEKAKEFGAT-------EFINPKDLKKPIQEVIIEMTDGGV 263 (375)
T ss_pred CCCCEEEEEecchHHHHHHHhHHhcCcccEEEEecCHHHHHHHHhcCcc-------eecChhhccccHHHHHHHHhcCCc
Confidence 4557888888886 444444444 665 999999999999999875432 22221 222211 13567
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccCCCC
Q 026903 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPISDH 219 (231)
Q Consensus 176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~~~~~ 219 (231)
|.-+ .+..+ ...+++.......| |.-+++..+..++
T Consensus 264 Dysf--Ec~G~------~~~m~~al~s~h~GwG~sv~iGv~~~~~ 300 (375)
T KOG0022|consen 264 DYSF--ECIGN------VSTMRAALESCHKGWGKSVVIGVAAAGQ 300 (375)
T ss_pred eEEE--EecCC------HHHHHHHHHHhhcCCCeEEEEEecCCCc
Confidence 7665 22222 23466677777888 8888877766544
No 455
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=86.21 E-value=1.2 Score=37.69 Aligned_cols=95 Identities=15% Similarity=0.168 Sum_probs=58.0
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEcc-----CCC---CCCCCce
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKAD-----FFT---WCPTELF 175 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d-----~~~---~~~~~~f 175 (231)
.++.+||-.|+|. |..+..+++ .|. +|++++.+++..+.+++.-.. .++... +.+ ....+.+
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~~~~~~~~~~~~Ga~-------~~i~~~~~~~~~~~~v~~~~~~~~ 258 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDLNPSKFEQAKKFGVT-------EFVNPKDHDKPVQEVIAEMTGGGV 258 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHcCCc-------eEEcccccchhHHHHHHHHhCCCC
Confidence 4567899998764 555666666 777 799999999988888653211 111111 111 0112368
Q ss_pred eEEEeCCcccccChHHHHHHHHHHHhhcCCC-cEEEEEEccC
Q 026903 176 DLIFDYTFFCAIEPEMRAAWAQKIKDFLKPD-GELITLMFPI 216 (231)
Q Consensus 176 D~i~~~~~~~~~~~~~~~~~l~~~~~~L~pg-G~l~~~~~~~ 216 (231)
|+++....- ...+....+.+++| |.+++.....
T Consensus 259 d~vid~~G~--------~~~~~~~~~~~~~~~g~~v~~g~~~ 292 (369)
T cd08301 259 DYSFECTGN--------IDAMISAFECVHDGWGVTVLLGVPH 292 (369)
T ss_pred CEEEECCCC--------hHHHHHHHHHhhcCCCEEEEECcCC
Confidence 988843211 23456677888996 9988776643
No 456
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.07 E-value=17 Score=29.50 Aligned_cols=103 Identities=15% Similarity=0.119 Sum_probs=59.8
Q ss_pred CCCcEEEecCC--C--ch-HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903 108 PKGRALVPGCG--T--GY-DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (231)
Q Consensus 108 ~~~~vLDiGcG--~--G~-~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 171 (231)
.++.+|-.|++ . |. .+..|++.|.+|+.++.+++..+...+.....+ .. .++.+|+.+.. .
T Consensus 4 ~~k~~lItGas~~~GIG~aiA~~la~~G~~Vil~~r~~~~~~~~~~~~~~~~--~~-~~~~~Dv~d~~~v~~~~~~i~~~ 80 (274)
T PRK08415 4 KGKKGLIVGVANNKSIAYGIAKACFEQGAELAFTYLNEALKKRVEPIAQELG--SD-YVYELDVSKPEHFKSLAESLKKD 80 (274)
T ss_pred CCcEEEEECCCCCCCHHHHHHHHHHHCCCEEEEEecCHHHHHHHHHHHHhcC--Cc-eEEEecCCCHHHHHHHHHHHHHH
Confidence 45789999985 2 32 344555689999999988643333333222222 12 56788988831 1
Q ss_pred CCceeEEEeCCcccc----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903 172 TELFDLIFDYTFFCA----------IEPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 172 ~~~fD~i~~~~~~~~----------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~ 213 (231)
-+.+|+++.+..+.. .+.++. ..+.+.+...|+.+|.++.+.
T Consensus 81 ~g~iDilVnnAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~g~~~l~~~~~p~m~~~g~Iv~is 143 (274)
T PRK08415 81 LGKIDFIVHSVAFAPKEALEGSFLETSKEAFNIAMEISVYSLIELTRALLPLLNDGASVLTLS 143 (274)
T ss_pred cCCCCEEEECCccCcccccccccccCCHHHHHHHhhhhhHHHHHHHHHHHHHhccCCcEEEEe
Confidence 257899988765321 122222 234456666777778766544
No 457
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=86.03 E-value=15 Score=29.26 Aligned_cols=103 Identities=16% Similarity=0.079 Sum_probs=60.8
Q ss_pred CCCCcEEEecCC-CchHH----HHhcCCCCeEEEEeCCh--HHHHHHHHHhccCCCCCceEEEEccCCCCC---------
Q 026903 107 LPKGRALVPGCG-TGYDV----VAMASPERYVVGLEISD--IAIKKAEELSSSLPNAKFVSFLKADFFTWC--------- 170 (231)
Q Consensus 107 ~~~~~vLDiGcG-~G~~~----~~l~~~~~~v~~iD~s~--~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~--------- 170 (231)
..++++|-.|+| ++..+ ..|++.|.+|+.++.+. +.++...+... .++.++.+|+.+..
T Consensus 5 ~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~~r~~~~~~~~~~~~~~~-----~~~~~~~~Dv~~~~~i~~~~~~~ 79 (256)
T PRK07889 5 LEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLTGFGRALRLTERIAKRLP-----EPAPVLELDVTNEEHLASLADRV 79 (256)
T ss_pred ccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEecCccchhHHHHHHHhcC-----CCCcEEeCCCCCHHHHHHHHHHH
Confidence 345789999984 34444 34455889999988653 43443333221 24678889988731
Q ss_pred --CCCceeEEEeCCcccc-------c---ChHHH-----------HHHHHHHHhhcCCCcEEEEEEc
Q 026903 171 --PTELFDLIFDYTFFCA-------I---EPEMR-----------AAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 171 --~~~~fD~i~~~~~~~~-------~---~~~~~-----------~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
.-+.+|+++.+..+.. + +.++. ..+.+.+...|+++|.++...+
T Consensus 80 ~~~~g~iD~li~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~m~~~g~Iv~is~ 146 (256)
T PRK07889 80 REHVDGLDGVVHSIGFAPQSALGGNFLDAPWEDVATALHVSAYSLKSLAKALLPLMNEGGSIVGLDF 146 (256)
T ss_pred HHHcCCCcEEEEccccccccccCCCcccCCHHHHHHHHHHHhHHHHHHHHHHHHhcccCceEEEEee
Confidence 1257899988754321 1 11211 1344566677788888776654
No 458
>cd08286 FDH_like_ADH2 formaldehyde dehydrogenase (FDH)-like. This group is related to formaldehyde dehydrogenase (FDH), which is a member of the zinc-dependent/medium chain alcohol dehydrogenase family. This family uses NAD(H) as a cofactor in the interconversion of alcohols and aldehydes, or ketones. Another member is identified as a dihydroxyacetone reductase. Like the zinc-dependent alcohol dehydrogenases (ADH) of the medium chain alcohol dehydrogenase/reductase family (MDR), tetrameric FDHs have a catalytic zinc that resides between the catalytic and NAD(H)binding domains and a structural zinc in a lobe of the catalytic domain. Unlike ADH, where NAD(P)(H) acts as a cofactor, NADH in FDH is a tightly bound redox cofactor (similar to nicotinamide proteins). The medium chain alcohol dehydrogenase family (MDR) has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (
Probab=85.99 E-value=1.7 Score=36.26 Aligned_cols=94 Identities=16% Similarity=0.268 Sum_probs=54.7
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CC-CeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC----CCCCCCCceeEEEe
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PE-RYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF----FTWCPTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~-~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~----~~~~~~~~fD~i~~ 180 (231)
++.+||-.|+|. |..+..+++ .| .++++++.++.....+++.-. ..-+.....+. ........+|+|+.
T Consensus 166 ~g~~vlI~g~g~~g~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~g~----~~~v~~~~~~~~~~i~~~~~~~~~d~vld 241 (345)
T cd08286 166 PGDTVAIVGAGPVGLAALLTAQLYSPSKIIMVDLDDNRLEVAKKLGA----THTVNSAKGDAIEQVLELTDGRGVDVVIE 241 (345)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcCCHHHHHHHHHhCC----CceeccccccHHHHHHHHhCCCCCCEEEE
Confidence 456777777653 445555555 77 688999998887777665321 00011111111 11223346999985
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
.. .. ...+..+.+.|+++|.++...
T Consensus 242 ~~-----g~---~~~~~~~~~~l~~~g~~v~~g 266 (345)
T cd08286 242 AV-----GI---PATFELCQELVAPGGHIANVG 266 (345)
T ss_pred CC-----CC---HHHHHHHHHhccCCcEEEEec
Confidence 32 11 124677789999999987654
No 459
>PRK12743 oxidoreductase; Provisional
Probab=85.94 E-value=16 Score=29.07 Aligned_cols=72 Identities=13% Similarity=-0.018 Sum_probs=43.6
Q ss_pred CcEEEecCCCc---hHHHHhcCCCCeEEEEeC-ChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CCc
Q 026903 110 GRALVPGCGTG---YDVVAMASPERYVVGLEI-SDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TEL 174 (231)
Q Consensus 110 ~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~-s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~~ 174 (231)
++||-.|++.| .++..+++.|.+|+.+.. +....+...+.....+ .++.++.+|+.+... -+.
T Consensus 3 k~vlItGas~giG~~~a~~l~~~G~~V~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~~~~ 80 (256)
T PRK12743 3 QVAIVTASDSGIGKACALLLAQQGFDIGITWHSDEEGAKETAEEVRSHG--VRAEIRQLDLSDLPEGAQALDKLIQRLGR 80 (256)
T ss_pred CEEEEECCCchHHHHHHHHHHHCCCEEEEEeCCChHHHHHHHHHHHhcC--CceEEEEccCCCHHHHHHHHHHHHHHcCC
Confidence 57888887654 223344458888888754 4444444433333322 468899999987321 136
Q ss_pred eeEEEeCCc
Q 026903 175 FDLIFDYTF 183 (231)
Q Consensus 175 fD~i~~~~~ 183 (231)
.|.++++..
T Consensus 81 id~li~~ag 89 (256)
T PRK12743 81 IDVLVNNAG 89 (256)
T ss_pred CCEEEECCC
Confidence 899987654
No 460
>PRK06172 short chain dehydrogenase; Provisional
Probab=85.93 E-value=4.4 Score=32.08 Aligned_cols=76 Identities=18% Similarity=0.112 Sum_probs=50.8
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------C
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------T 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~ 172 (231)
+.++++|-.|++.| ..+..+++.|.+|+.++.+++.++...+.....+ .++.++.+|+.+... -
T Consensus 5 l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~i~~~~~~~~~~~ 82 (253)
T PRK06172 5 FSGKVALVTGGAAGIGRATALAFAREGAKVVVADRDAAGGEETVALIREAG--GEALFVACDVTRDAEVKALVEQTIAAY 82 (253)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHHh
Confidence 34578899987654 2344455688999999999877665555443322 458899999987210 1
Q ss_pred CceeEEEeCCcc
Q 026903 173 ELFDLIFDYTFF 184 (231)
Q Consensus 173 ~~fD~i~~~~~~ 184 (231)
+.+|+|+.+...
T Consensus 83 g~id~li~~ag~ 94 (253)
T PRK06172 83 GRLDYAFNNAGI 94 (253)
T ss_pred CCCCEEEECCCC
Confidence 367999877543
No 461
>PRK07890 short chain dehydrogenase; Provisional
Probab=85.84 E-value=4.4 Score=32.15 Aligned_cols=75 Identities=16% Similarity=0.068 Sum_probs=50.1
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026903 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~ 173 (231)
.+++||-.|++.| .++..|++.|.+|+.++.++...+...+.....+ .++.++..|+.+... -+
T Consensus 4 ~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~g 81 (258)
T PRK07890 4 KGKVVVVSGVGPGLGRTLAVRAARAGADVVLAARTAERLDEVAAEIDDLG--RRALAVPTDITDEDQCANLVALALERFG 81 (258)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEeCCHHHHHHHHHHHHHhC--CceEEEecCCCCHHHHHHHHHHHHHHcC
Confidence 4578888887654 2344555689999999999877665555443222 357889999987211 14
Q ss_pred ceeEEEeCCcc
Q 026903 174 LFDLIFDYTFF 184 (231)
Q Consensus 174 ~fD~i~~~~~~ 184 (231)
..|+|+.+...
T Consensus 82 ~~d~vi~~ag~ 92 (258)
T PRK07890 82 RVDALVNNAFR 92 (258)
T ss_pred CccEEEECCcc
Confidence 68999887543
No 462
>PRK06484 short chain dehydrogenase; Validated
Probab=85.79 E-value=11 Score=33.54 Aligned_cols=72 Identities=14% Similarity=0.029 Sum_probs=49.4
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CC
Q 026903 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~ 173 (231)
.++.+|-.|++.| ..+..|++.|.+|+.++.+...++...+... .++.++.+|+.+... -+
T Consensus 4 ~~k~~lITGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 78 (520)
T PRK06484 4 QSRVVLVTGAAGGIGRAACQRFARAGDQVVVADRNVERARERADSLG-----PDHHALAMDVSDEAQIREGFEQLHREFG 78 (520)
T ss_pred CCeEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceeEEEeccCCHHHHHHHHHHHHHHhC
Confidence 4568888888776 4455566689999999998877665544331 246788899887311 14
Q ss_pred ceeEEEeCCcc
Q 026903 174 LFDLIFDYTFF 184 (231)
Q Consensus 174 ~fD~i~~~~~~ 184 (231)
..|+++.+...
T Consensus 79 ~iD~li~nag~ 89 (520)
T PRK06484 79 RIDVLVNNAGV 89 (520)
T ss_pred CCCEEEECCCc
Confidence 68999877543
No 463
>PRK07062 short chain dehydrogenase; Provisional
Probab=85.78 E-value=4.5 Score=32.33 Aligned_cols=78 Identities=14% Similarity=0.019 Sum_probs=51.7
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CC
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PT 172 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~ 172 (231)
+.++.+|-.|++.| ..+..+++.|.+|+.++.+++.++...+.........++.++.+|+.+.. .-
T Consensus 6 l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~~~~~v~~~~~~~~~~~ 85 (265)
T PRK07062 6 LEGRVAVVTGGSSGIGLATVELLLEAGASVAICGRDEERLASAEARLREKFPGARLLAARCDVLDEADVAAFAAAVEARF 85 (265)
T ss_pred cCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhhCCCceEEEEEecCCCHHHHHHHHHHHHHhc
Confidence 44678999998765 33455556899999999998777665554433211135778889988831 11
Q ss_pred CceeEEEeCCcc
Q 026903 173 ELFDLIFDYTFF 184 (231)
Q Consensus 173 ~~fD~i~~~~~~ 184 (231)
+..|+++.+...
T Consensus 86 g~id~li~~Ag~ 97 (265)
T PRK07062 86 GGVDMLVNNAGQ 97 (265)
T ss_pred CCCCEEEECCCC
Confidence 468998876543
No 464
>COG1062 AdhC Zn-dependent alcohol dehydrogenases, class III [Energy production and conversion]
Probab=85.77 E-value=3.5 Score=34.72 Aligned_cols=98 Identities=13% Similarity=0.188 Sum_probs=63.7
Q ss_pred CCCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEc----cCCC---CCCCCcee
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKA----DFFT---WCPTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~----d~~~---~~~~~~fD 176 (231)
.++..|.-+|||. |..+..-++ .|. +++++|++++-++.|++--.. ++++. |+.+ ...++..|
T Consensus 184 ~~G~tvaV~GlGgVGlaaI~gA~~agA~~IiAvD~~~~Kl~~A~~fGAT-------~~vn~~~~~~vv~~i~~~T~gG~d 256 (366)
T COG1062 184 EPGDTVAVFGLGGVGLAAIQGAKAAGAGRIIAVDINPEKLELAKKFGAT-------HFVNPKEVDDVVEAIVELTDGGAD 256 (366)
T ss_pred CCCCeEEEEeccHhHHHHHHHHHHcCCceEEEEeCCHHHHHHHHhcCCc-------eeecchhhhhHHHHHHHhcCCCCC
Confidence 4567999999986 666666665 554 899999999999999885432 23332 2222 11123566
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 219 (231)
..+.. ... ...++....++.++|..+++..+..++
T Consensus 257 ~~~e~--~G~------~~~~~~al~~~~~~G~~v~iGv~~~~~ 291 (366)
T COG1062 257 YAFEC--VGN------VEVMRQALEATHRGGTSVIIGVAGAGQ 291 (366)
T ss_pred EEEEc--cCC------HHHHHHHHHHHhcCCeEEEEecCCCCc
Confidence 66521 111 235677777778899999988877654
No 465
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=85.73 E-value=4.2 Score=32.55 Aligned_cols=77 Identities=17% Similarity=0.059 Sum_probs=53.4
Q ss_pred CCCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------
Q 026903 106 ALPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------- 171 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------- 171 (231)
...++++|-.|++.| ..+..|++.|.+|+.++.++..++...+.....+ .++.++.+|+.+...
T Consensus 7 ~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~~~~~~~~~~~~~~~~~~~--~~~~~~~~Dl~~~~~~~~~~~~~~~~ 84 (265)
T PRK07097 7 SLKGKIALITGASYGIGFAIAKAYAKAGATIVFNDINQELVDKGLAAYRELG--IEAHGYVCDVTDEDGVQAMVSQIEKE 84 (265)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHhcC--CceEEEEcCCCCHHHHHHHHHHHHHh
Confidence 345678999998775 3455566689999999998877766655554322 358889999987211
Q ss_pred CCceeEEEeCCcc
Q 026903 172 TELFDLIFDYTFF 184 (231)
Q Consensus 172 ~~~fD~i~~~~~~ 184 (231)
-+.+|+++.+...
T Consensus 85 ~~~id~li~~ag~ 97 (265)
T PRK07097 85 VGVIDILVNNAGI 97 (265)
T ss_pred CCCCCEEEECCCC
Confidence 1468999877554
No 466
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=85.72 E-value=3 Score=33.05 Aligned_cols=63 Identities=11% Similarity=0.064 Sum_probs=43.2
Q ss_pred cEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHH-HhccCCCCCceEEEEccCCCC---CC--CCceeEEEe
Q 026903 111 RALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEE-LSSSLPNAKFVSFLKADFFTW---CP--TELFDLIFD 180 (231)
Q Consensus 111 ~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~-~~~~~~~~~~i~~~~~d~~~~---~~--~~~fD~i~~ 180 (231)
+++-+|||. | ..+..|.+.|..|+.+|.+++.++.... .. ..+.+.+|..+. .. -..+|++++
T Consensus 2 ~iiIiG~G~vG~~va~~L~~~g~~Vv~Id~d~~~~~~~~~~~~-------~~~~v~gd~t~~~~L~~agi~~aD~vva 72 (225)
T COG0569 2 KIIIIGAGRVGRSVARELSEEGHNVVLIDRDEERVEEFLADEL-------DTHVVIGDATDEDVLEEAGIDDADAVVA 72 (225)
T ss_pred EEEEECCcHHHHHHHHHHHhCCCceEEEEcCHHHHHHHhhhhc-------ceEEEEecCCCHHHHHhcCCCcCCEEEE
Confidence 577788875 3 3445555689999999999998777332 22 367888888882 11 236888774
No 467
>COG4017 Uncharacterized protein conserved in archaea [Function unknown]
Probab=85.67 E-value=3.3 Score=31.92 Aligned_cols=72 Identities=26% Similarity=0.174 Sum_probs=51.6
Q ss_pred CCCCcEEEecCC-CchHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCccc
Q 026903 107 LPKGRALVPGCG-TGYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFC 185 (231)
Q Consensus 107 ~~~~~vLDiGcG-~G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~ 185 (231)
.....||-+|.= +|.+...+++...+|+.+|+.|.+-... .+++.|... . .++.+.+|+|+..-.+.
T Consensus 43 ~E~~~vli~G~YltG~~~a~~Ls~~~~vtv~Di~p~~r~~l---------p~~v~Fr~~--~-~~~~G~~DlivDlTGlG 110 (254)
T COG4017 43 EEFKEVLIFGVYLTGNYTAQMLSKADKVTVVDIHPFMRGFL---------PNNVKFRNL--L-KFIRGEVDLIVDLTGLG 110 (254)
T ss_pred cCcceEEEEEeeehhHHHHHHhcccceEEEecCCHHHHhcC---------CCCccHhhh--c-CCCCCceeEEEeccccC
Confidence 345799999875 5888888887788999999999764322 234666544 2 23456899999887777
Q ss_pred ccChH
Q 026903 186 AIEPE 190 (231)
Q Consensus 186 ~~~~~ 190 (231)
-..|+
T Consensus 111 G~~Pe 115 (254)
T COG4017 111 GIEPE 115 (254)
T ss_pred CCCHH
Confidence 77665
No 468
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=85.57 E-value=2.3 Score=36.42 Aligned_cols=91 Identities=24% Similarity=0.215 Sum_probs=54.9
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHH-HHHHHHHhccCCCCCceEEEEc-c---CCCCCCCCceeEEEe
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIA-IKKAEELSSSLPNAKFVSFLKA-D---FFTWCPTELFDLIFD 180 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~-i~~a~~~~~~~~~~~~i~~~~~-d---~~~~~~~~~fD~i~~ 180 (231)
++.+||-.|+|. |..+..+++ .|.++++++.+++. .+.+++. +. + .++.. + +.+.. ..+|+|+.
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~~~~~~~~a~~l----Ga-~--~~i~~~~~~~v~~~~--~~~D~vid 248 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRSSEKEREAIDRL----GA-D--SFLVTTDSQKMKEAV--GTMDFIID 248 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCChHHhHHHHHhC----CC-c--EEEcCcCHHHHHHhh--CCCcEEEE
Confidence 567888888865 666677776 78889999887553 4455332 11 1 11111 1 11111 25898884
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
...- ...+....+.++++|.++.....
T Consensus 249 ~~G~--------~~~~~~~~~~l~~~G~iv~vG~~ 275 (375)
T PLN02178 249 TVSA--------EHALLPLFSLLKVSGKLVALGLP 275 (375)
T ss_pred CCCc--------HHHHHHHHHhhcCCCEEEEEccC
Confidence 3211 12466778899999999877654
No 469
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=85.52 E-value=9.3 Score=31.35 Aligned_cols=95 Identities=16% Similarity=0.049 Sum_probs=57.9
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-CC--------CceEEEEccCCCCCC
Q 026903 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-NA--------KFVSFLKADFFTWCP 171 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~~ 171 (231)
.+|.-||+|. +..+..++..|..|+..|.+++.++.+.+..... + .. .++.+. .+.. .
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~l~d~~~~~~~~~~~~i~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~~-~-- 80 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVLLNDVSADRLEAGLATINGNLARQVAKGKISEEARAAALARISTA-TDLE-D-- 80 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEee-CCHH-H--
Confidence 4788899986 3455566668899999999999988765432211 1 00 112221 2221 1
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
-...|+|+..- .. +.+.+..+++.+...++|+.+++.
T Consensus 81 ~~~aD~Vieav-pe--~~~~k~~~~~~l~~~~~~~~ii~s 117 (292)
T PRK07530 81 LADCDLVIEAA-TE--DETVKRKIFAQLCPVLKPEAILAT 117 (292)
T ss_pred hcCCCEEEEcC-cC--CHHHHHHHHHHHHhhCCCCcEEEE
Confidence 13578887421 11 114456778889999999987753
No 470
>TIGR02437 FadB fatty oxidation complex, alpha subunit FadB. Members represent alpha subunit of multifunctional enzyme complex of the fatty acid degradation cycle. Activities include: enoyl-CoA hydratase (EC 4.2.1.17), dodecenoyl-CoA delta-isomerase activity (EC 5.3.3.8), 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35), 3-hydroxybutyryl-CoA epimerase (EC 5.1.2.3). A representative is E. coli FadB. This model excludes the FadJ family represented by SP:P77399.
Probab=85.52 E-value=3.8 Score=38.34 Aligned_cols=97 Identities=15% Similarity=0.145 Sum_probs=65.3
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-C--------CCceEEEEccCCCCCC
Q 026903 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-N--------AKFVSFLKADFFTWCP 171 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~~ 171 (231)
.+|--||+|+ +..+..++..|..|+.+|.+++.++.+.++.... + . ..++++- .|. + .
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~-~~~-~--~ 389 (714)
T TIGR02437 314 KQAAVLGAGIMGGGIAYQSASKGTPIVMKDINQHSLDLGLTEAAKLLNKQVERGRITPAKMAGVLNGITPT-LSY-A--G 389 (714)
T ss_pred ceEEEECCchHHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCH-H--H
Confidence 5899999996 4556666778999999999999998876654321 1 0 0123222 111 1 1
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
-...|+|+= .+++.+ +.+.++++++-.+++|+.+|...+
T Consensus 390 ~~~aDlViE-av~E~l--~~K~~vf~~l~~~~~~~~ilasnT 428 (714)
T TIGR02437 390 FDNVDIVVE-AVVENP--KVKAAVLAEVEQHVREDAILASNT 428 (714)
T ss_pred hcCCCEEEE-cCcccH--HHHHHHHHHHHhhCCCCcEEEECC
Confidence 135788873 244444 677899999999999999887644
No 471
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=85.49 E-value=2.4 Score=36.93 Aligned_cols=95 Identities=19% Similarity=0.121 Sum_probs=53.4
Q ss_pred CcEEEecCCCc--hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC---CC---------CCceEEEEccCCCCCCCCce
Q 026903 110 GRALVPGCGTG--YDVVAMASPERYVVGLEISDIAIKKAEELSSSL---PN---------AKFVSFLKADFFTWCPTELF 175 (231)
Q Consensus 110 ~~vLDiGcG~G--~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~---~~---------~~~i~~~~~d~~~~~~~~~f 175 (231)
++|--+|.|.- ..+..|++.|++|+++|.+++.++..+...... ++ ..++.+. . .....
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~D~~~~~v~~l~~g~~~~~e~~l~~~l~~~~~~g~l~~~-~------~~~~a 76 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGVDINQHAVDTINRGEIHIVEPDLDMVVKTAVEGGYLRAT-T------TPEPA 76 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEEeCCHHHHHHHHCCCCCcCCCCHHHHHHHHhhcCceeee-c------ccccC
Confidence 46788888853 334445668999999999999888643211000 00 0011111 0 11246
Q ss_pred eEEEeCCccc-----ccChHHHHHHHHHHHhhcCCCcEEEE
Q 026903 176 DLIFDYTFFC-----AIEPEMRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 176 D~i~~~~~~~-----~~~~~~~~~~l~~~~~~L~pgG~l~~ 211 (231)
|+|+..-.-. ..+-......++.+...|++|.+++.
T Consensus 77 Dvvii~vptp~~~~~~~dl~~v~~~~~~i~~~l~~g~iVI~ 117 (415)
T PRK11064 77 DAFLIAVPTPFKGDHEPDLTYVEAAAKSIAPVLKKGDLVIL 117 (415)
T ss_pred CEEEEEcCCCCCCCCCcChHHHHHHHHHHHHhCCCCCEEEE
Confidence 7777432211 01114556677888899988876654
No 472
>cd08263 Zn_ADH10 Alcohol dehydrogenases of the MDR family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzyme with the ADH backbone. The N-terminal catalytic domain has a distant homology to GroES. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subu
Probab=85.46 E-value=1.6 Score=36.89 Aligned_cols=93 Identities=16% Similarity=0.195 Sum_probs=55.7
Q ss_pred CCCCcEEEecCC-CchHHHHhcC-CCCe-EEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCcee
Q 026903 107 LPKGRALVPGCG-TGYDVVAMAS-PERY-VVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFD 176 (231)
Q Consensus 107 ~~~~~vLDiGcG-~G~~~~~l~~-~~~~-v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD 176 (231)
.++.+||-.|+| .|..+..+++ .|.+ +++++.+++..+.+++.- . ..++..+-.+ ......+|
T Consensus 186 ~~g~~VlI~g~g~vG~~~~~lak~~G~~~vi~~~~s~~~~~~~~~~g-~------~~v~~~~~~~~~~~l~~~~~~~~~d 258 (367)
T cd08263 186 RPGETVAVIGVGGVGSSAIQLAKAFGASPIIAVDVRDEKLAKAKELG-A------THTVNAAKEDAVAAIREITGGRGVD 258 (367)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHhC-C------ceEecCCcccHHHHHHHHhCCCCCC
Confidence 345677777665 3555555665 6776 999999988887775421 1 1122221111 12234699
Q ss_pred EEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 177 LIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 177 ~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
+|+.... .. ..+..+.++|+++|.++....
T Consensus 259 ~vld~vg-----~~---~~~~~~~~~l~~~G~~v~~g~ 288 (367)
T cd08263 259 VVVEALG-----KP---ETFKLALDVVRDGGRAVVVGL 288 (367)
T ss_pred EEEEeCC-----CH---HHHHHHHHHHhcCCEEEEEcc
Confidence 9985321 11 146778889999999877653
No 473
>PRK08159 enoyl-(acyl carrier protein) reductase; Provisional
Probab=85.44 E-value=18 Score=29.25 Aligned_cols=104 Identities=17% Similarity=0.137 Sum_probs=59.2
Q ss_pred CCCcEEEecCC-CchH----HHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------C
Q 026903 108 PKGRALVPGCG-TGYD----VVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------P 171 (231)
Q Consensus 108 ~~~~vLDiGcG-~G~~----~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~ 171 (231)
.++.+|-.|++ ++.. +..|++.|.+|+.+..++...+.+.+.....+ ...++.+|+.+.. .
T Consensus 9 ~~k~~lItGas~~~GIG~aia~~la~~G~~V~l~~r~~~~~~~~~~l~~~~~---~~~~~~~Dl~~~~~v~~~~~~~~~~ 85 (272)
T PRK08159 9 AGKRGLILGVANNRSIAWGIAKACRAAGAELAFTYQGDALKKRVEPLAAELG---AFVAGHCDVTDEASIDAVFETLEKK 85 (272)
T ss_pred cCCEEEEECCCCCCcHHHHHHHHHHHCCCEEEEEcCchHHHHHHHHHHHhcC---CceEEecCCCCHHHHHHHHHHHHHh
Confidence 45688999975 2333 44555689999888765433333333322222 2456788987721 1
Q ss_pred CCceeEEEeCCcccc----------cChHHH-----------HHHHHHHHhhcCCCcEEEEEEc
Q 026903 172 TELFDLIFDYTFFCA----------IEPEMR-----------AAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 172 ~~~fD~i~~~~~~~~----------~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
-+..|+++.+..+.. .+.+.. ..+++.+...|+.+|.++....
T Consensus 86 ~g~iD~lv~nAG~~~~~~~~~~~~~~~~~~~~~~~~vN~~~~~~l~~~~~~~~~~~g~Iv~iss 149 (272)
T PRK08159 86 WGKLDFVVHAIGFSDKDELTGRYVDTSRDNFTMTMDISVYSFTAVAQRAEKLMTDGGSILTLTY 149 (272)
T ss_pred cCCCcEEEECCcccCccccccCcccCCHHHHHHHHhHHHHHHHHHHHHHHHhcCCCceEEEEec
Confidence 246899998754321 122211 2444555667777788766553
No 474
>PRK08339 short chain dehydrogenase; Provisional
Probab=85.28 E-value=5.5 Score=32.00 Aligned_cols=76 Identities=24% Similarity=0.116 Sum_probs=51.5
Q ss_pred CCCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC----------CCC
Q 026903 107 LPKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC----------PTE 173 (231)
Q Consensus 107 ~~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~----------~~~ 173 (231)
+.++++|-.|++.| ..+..|++.|.+|+.++.++..++...+...... ..++.++.+|+.+.. .-+
T Consensus 6 l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~-~~~~~~~~~Dv~~~~~i~~~~~~~~~~g 84 (263)
T PRK08339 6 LSGKLAFTTASSKGIGFGVARVLARAGADVILLSRNEENLKKAREKIKSES-NVDVSYIVADLTKREDLERTVKELKNIG 84 (263)
T ss_pred CCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhhc-CCceEEEEecCCCHHHHHHHHHHHHhhC
Confidence 45678898888765 3455666689999999999887766655443211 235888999998831 114
Q ss_pred ceeEEEeCCc
Q 026903 174 LFDLIFDYTF 183 (231)
Q Consensus 174 ~fD~i~~~~~ 183 (231)
..|+++.+..
T Consensus 85 ~iD~lv~nag 94 (263)
T PRK08339 85 EPDIFFFSTG 94 (263)
T ss_pred CCcEEEECCC
Confidence 6898887654
No 475
>PRK06484 short chain dehydrogenase; Validated
Probab=85.20 E-value=16 Score=32.51 Aligned_cols=101 Identities=14% Similarity=0.072 Sum_probs=62.7
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-----CC
Q 026903 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-----TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----~~ 173 (231)
.++.+|-.|++.| ..+..|++.|.+|+.++.++..++...+... .++..+.+|+.+.. . -+
T Consensus 268 ~~k~~lItGas~gIG~~~a~~l~~~G~~V~~~~r~~~~~~~~~~~~~-----~~~~~~~~D~~~~~~~~~~~~~~~~~~g 342 (520)
T PRK06484 268 SPRVVAITGGARGIGRAVADRFAAAGDRLLIIDRDAEGAKKLAEALG-----DEHLSVQADITDEAAVESAFAQIQARWG 342 (520)
T ss_pred CCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHhC-----CceeEEEccCCCHHHHHHHHHHHHHHcC
Confidence 4578888888766 3455566689999999998877766554432 24567888888721 0 14
Q ss_pred ceeEEEeCCccc-------ccChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903 174 LFDLIFDYTFFC-------AIEPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 174 ~fD~i~~~~~~~-------~~~~~~~-----------~~~l~~~~~~L~pgG~l~~~~ 213 (231)
.+|+++.+.... ..+.+.. ..+++.+...|+.+|.++++.
T Consensus 343 ~id~li~nAg~~~~~~~~~~~~~~~~~~~~~~n~~~~~~~~~~~~~~~~~~g~iv~is 400 (520)
T PRK06484 343 RLDVLVNNAGIAEVFKPSLEQSAEDFTRVYDVNLSGAFACARAAARLMSQGGVIVNLG 400 (520)
T ss_pred CCCEEEECCCCcCCCCChhhCCHHHHHHHHHhCcHHHHHHHHHHHHHhccCCEEEEEC
Confidence 689998765432 1122221 133555566667778776543
No 476
>PRK06182 short chain dehydrogenase; Validated
Probab=85.00 E-value=13 Score=29.91 Aligned_cols=69 Identities=19% Similarity=0.115 Sum_probs=44.5
Q ss_pred CCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-----CCc
Q 026903 109 KGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-----TEL 174 (231)
Q Consensus 109 ~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----~~~ 174 (231)
++++|-.|++.| .++..+++.|.+|++++.+++.++.... .+++++.+|+.+.. . .+.
T Consensus 3 ~k~vlItGasggiG~~la~~l~~~G~~V~~~~r~~~~l~~~~~--------~~~~~~~~Dv~~~~~~~~~~~~~~~~~~~ 74 (273)
T PRK06182 3 KKVALVTGASSGIGKATARRLAAQGYTVYGAARRVDKMEDLAS--------LGVHPLSLDVTDEASIKAAVDTIIAEEGR 74 (273)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHh--------CCCeEEEeeCCCHHHHHHHHHHHHHhcCC
Confidence 457888886544 2233344588999999998776543321 13778889988821 1 136
Q ss_pred eeEEEeCCccc
Q 026903 175 FDLIFDYTFFC 185 (231)
Q Consensus 175 fD~i~~~~~~~ 185 (231)
.|+++.+....
T Consensus 75 id~li~~ag~~ 85 (273)
T PRK06182 75 IDVLVNNAGYG 85 (273)
T ss_pred CCEEEECCCcC
Confidence 89999876543
No 477
>PRK06914 short chain dehydrogenase; Provisional
Probab=84.97 E-value=5.8 Score=31.97 Aligned_cols=75 Identities=15% Similarity=0.126 Sum_probs=48.0
Q ss_pred CCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------CCce
Q 026903 109 KGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------TELF 175 (231)
Q Consensus 109 ~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~~f 175 (231)
++++|-.|++.| .++..|++.|++|++++.++...+...+.....+...++.++.+|+.+... -+..
T Consensus 3 ~k~~lItGasg~iG~~la~~l~~~G~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~D~~d~~~~~~~~~~~~~~~~i 82 (280)
T PRK06914 3 KKIAIVTGASSGFGLLTTLELAKKGYLVIATMRNPEKQENLLSQATQLNLQQNIKVQQLDVTDQNSIHNFQLVLKEIGRI 82 (280)
T ss_pred CCEEEEECCCchHHHHHHHHHHhCCCEEEEEeCCHHHHHHHHHHHHhcCCCCceeEEecCCCCHHHHHHHHHHHHhcCCe
Confidence 356788886554 233445568999999998877665554433322223468899999988321 1357
Q ss_pred eEEEeCCc
Q 026903 176 DLIFDYTF 183 (231)
Q Consensus 176 D~i~~~~~ 183 (231)
|.|+.+..
T Consensus 83 d~vv~~ag 90 (280)
T PRK06914 83 DLLVNNAG 90 (280)
T ss_pred eEEEECCc
Confidence 88887644
No 478
>KOG0821 consensus Predicted ribosomal RNA adenine dimethylase [RNA processing and modification]
Probab=84.93 E-value=2.7 Score=33.14 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=48.5
Q ss_pred HHHHHcC-CCCCCcEEEecCCCchHHHHhcCCCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC
Q 026903 99 VHLHQSG-ALPKGRALVPGCGTGYDVVAMASPER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT 168 (231)
Q Consensus 99 ~~~~~~~-~~~~~~vLDiGcG~G~~~~~l~~~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~ 168 (231)
..++.+. .+.+.-|++||.|.|..+..+...|. +...+|.+...+.-.+...+... .+..+..+|+..
T Consensus 40 ~KIvK~A~~~~~~~v~eIgPgpggitR~il~a~~~RL~vVE~D~RFip~LQ~L~EAa~--~~~~IHh~D~LR 109 (326)
T KOG0821|consen 40 DKIVKKAGNLTNAYVYEIGPGPGGITRSILNADVARLLVVEKDTRFIPGLQMLSEAAP--GKLRIHHGDVLR 109 (326)
T ss_pred HHHHHhccccccceeEEecCCCCchhHHHHhcchhheeeeeeccccChHHHHHhhcCC--cceEEeccccce
Confidence 4444443 45668999999999999999998775 78888998888777665544332 345666666554
No 479
>TIGR02441 fa_ox_alpha_mit fatty acid oxidation complex, alpha subunit, mitochondrial. Members represent alpha subunit of mitochondrial multifunctional fatty acid degradation enzyme complex. Subunit activities include: enoyl-CoA hydratase (EC 4.2.1.17) & 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35). Some characterization in human, pig, and rat. The beta subunit has activity: acetyl-CoA C-acyltransferase (EC 2.3.1.16).
Probab=84.90 E-value=3.1 Score=39.02 Aligned_cols=98 Identities=8% Similarity=0.057 Sum_probs=65.9
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-CC--------CceEEEEccCCCCCC
Q 026903 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-NA--------KFVSFLKADFFTWCP 171 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~~--------~~i~~~~~d~~~~~~ 171 (231)
.+|--||+|+ +..+..++..|..|+.+|.+++.++.+.+++... + .. .++++. .|+..
T Consensus 336 ~~v~ViGaG~MG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~i~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--- 411 (737)
T TIGR02441 336 KTLAVLGAGLMGAGIAQVSVDKGLKTVLKDATPAGLDRGQQQVFKGLNKKVKRKKITSLERDSILSNLTPT-LDYSG--- 411 (737)
T ss_pred cEEEEECCCHhHHHHHHHHHhCCCcEEEecCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhCeEEe-CCHHH---
Confidence 5899999996 4556666778999999999999998876654321 1 00 123322 12211
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
-...|+|+= .+++.+ +.+.++++++-+.++|+.+|...+-
T Consensus 412 ~~~aDlViE-Av~E~l--~~K~~vf~~l~~~~~~~~ilasNTS 451 (737)
T TIGR02441 412 FKNADMVIE-AVFEDL--SLKHKVIKEVEAVVPPHCIIASNTS 451 (737)
T ss_pred hccCCeehh-hccccH--HHHHHHHHHHHhhCCCCcEEEEcCC
Confidence 135787762 344444 6778999999999999998876553
No 480
>PRK11730 fadB multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.88 E-value=4.6 Score=37.83 Aligned_cols=97 Identities=19% Similarity=0.138 Sum_probs=64.8
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-------C-C--------CCceEEEEccCCCCCC
Q 026903 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-------P-N--------AKFVSFLKADFFTWCP 171 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~~ 171 (231)
.+|--||+|+ ...+..++..|..|+.+|.+++.++.+.++.... + . ..++++. .|+..
T Consensus 314 ~~v~ViGaG~mG~gIA~~~a~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~g~~~~~~~~~~~~~i~~~-~~~~~--- 389 (715)
T PRK11730 314 KQAAVLGAGIMGGGIAYQSASKGVPVIMKDINQKALDLGMTEAAKLLNKQVERGKIDGAKMAGVLSSIRPT-LDYAG--- 389 (715)
T ss_pred ceEEEECCchhHHHHHHHHHhCCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCChhhHHHHHhCeEEe-CCHHH---
Confidence 5899999998 4556666778999999999999998776543221 1 0 1133322 22211
Q ss_pred CCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 172 TELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 172 ~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
-...|+|+= .+.+.+ +.+.++++++...++|+.+|...+
T Consensus 390 ~~~aDlViE-av~E~l--~~K~~vf~~l~~~~~~~~ilasNT 428 (715)
T PRK11730 390 FERVDVVVE-AVVENP--KVKAAVLAEVEQKVREDTILASNT 428 (715)
T ss_pred hcCCCEEEe-cccCcH--HHHHHHHHHHHhhCCCCcEEEEcC
Confidence 135788773 234444 677899999999999998876644
No 481
>PRK07677 short chain dehydrogenase; Provisional
Probab=84.84 E-value=4.9 Score=31.88 Aligned_cols=71 Identities=14% Similarity=0.067 Sum_probs=47.3
Q ss_pred CcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC-----------CCCce
Q 026903 110 GRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-----------PTELF 175 (231)
Q Consensus 110 ~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-----------~~~~f 175 (231)
+++|-.|++.| ..+..+++.|.+|+.++.++...+...+.....+ .++.++.+|+.+.. .-+..
T Consensus 2 k~~lItG~s~giG~~ia~~l~~~G~~Vi~~~r~~~~~~~~~~~~~~~~--~~~~~~~~D~~~~~~~~~~~~~~~~~~~~i 79 (252)
T PRK07677 2 KVVIITGGSSGMGKAMAKRFAEEGANVVITGRTKEKLEEAKLEIEQFP--GQVLTVQMDVRNPEDVQKMVEQIDEKFGRI 79 (252)
T ss_pred CEEEEeCCCChHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CcEEEEEecCCCHHHHHHHHHHHHHHhCCc
Confidence 57888888665 2344555689999999998876665554443322 35888999987721 01368
Q ss_pred eEEEeCC
Q 026903 176 DLIFDYT 182 (231)
Q Consensus 176 D~i~~~~ 182 (231)
|.++.+.
T Consensus 80 d~lI~~a 86 (252)
T PRK07677 80 DALINNA 86 (252)
T ss_pred cEEEECC
Confidence 9988764
No 482
>COG1893 ApbA Ketopantoate reductase [Coenzyme metabolism]
Probab=84.81 E-value=5.9 Score=32.98 Aligned_cols=91 Identities=13% Similarity=0.011 Sum_probs=56.0
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccC----CC-----CCCCCceeEE
Q 026903 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADF----FT-----WCPTELFDLI 178 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~----~~-----~~~~~~fD~i 178 (231)
++|+-+|+|. |+++..|++.|..|+.+-.++. ++..+++- +.+....- .. ......+|+|
T Consensus 1 mkI~IlGaGAvG~l~g~~L~~~g~~V~~~~R~~~-~~~l~~~G--------L~i~~~~~~~~~~~~~~~~~~~~~~~Dlv 71 (307)
T COG1893 1 MKILILGAGAIGSLLGARLAKAGHDVTLLVRSRR-LEALKKKG--------LRIEDEGGNFTTPVVAATDAEALGPADLV 71 (307)
T ss_pred CeEEEECCcHHHHHHHHHHHhCCCeEEEEecHHH-HHHHHhCC--------eEEecCCCccccccccccChhhcCCCCEE
Confidence 4788999997 6778888888855555555454 66666541 22222211 01 1122479999
Q ss_pred EeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 179 FDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 179 ~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
+..-= .-+...++..+...+++...+++..-
T Consensus 72 iv~vK-----a~q~~~al~~l~~~~~~~t~vl~lqN 102 (307)
T COG1893 72 IVTVK-----AYQLEEALPSLAPLLGPNTVVLFLQN 102 (307)
T ss_pred EEEec-----cccHHHHHHHhhhcCCCCcEEEEEeC
Confidence 83211 12446788999999999998776553
No 483
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=84.76 E-value=2.9 Score=34.43 Aligned_cols=92 Identities=17% Similarity=0.154 Sum_probs=57.0
Q ss_pred CcEEEecCCC-c-hHHHHhcCCCCeEEEEeCChHHHHHHHHHhc-------cCCC-C--------CceEEEEccCCCCCC
Q 026903 110 GRALVPGCGT-G-YDVVAMASPERYVVGLEISDIAIKKAEELSS-------SLPN-A--------KFVSFLKADFFTWCP 171 (231)
Q Consensus 110 ~~vLDiGcG~-G-~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~-------~~~~-~--------~~i~~~~~d~~~~~~ 171 (231)
.+|--||+|. | ..+..++..|.+|+++|.+++.++.+++... ..+. . .++.+ ..+. +.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~-~~~~-~~-- 80 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVWLLDSDPAALSRGLDSISSSLARLVKKGKMSQEEADATLGRIRC-TTNL-EE-- 80 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhceEe-eCCH-HH--
Confidence 4688889985 3 5556666788999999999998876654322 1110 0 01111 1121 11
Q ss_pred CCceeEEEeCCcccccC--hHHHHHHHHHHHhhcCCCcEEE
Q 026903 172 TELFDLIFDYTFFCAIE--PEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 172 ~~~fD~i~~~~~~~~~~--~~~~~~~l~~~~~~L~pgG~l~ 210 (231)
-...|+|+. .++ ++....++.++...++|+.+|+
T Consensus 81 ~~~aD~Vie-----av~e~~~~k~~v~~~l~~~~~~~~il~ 116 (295)
T PLN02545 81 LRDADFIIE-----AIVESEDLKKKLFSELDRICKPSAILA 116 (295)
T ss_pred hCCCCEEEE-----cCccCHHHHHHHHHHHHhhCCCCcEEE
Confidence 134688874 233 4666788888888889988665
No 484
>COG0623 FabI Enoyl-[acyl-carrier-protein]
Probab=84.73 E-value=18 Score=28.83 Aligned_cols=111 Identities=20% Similarity=0.145 Sum_probs=72.4
Q ss_pred CCCCCcEEEecCCCch-----HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCC------C----
Q 026903 106 ALPKGRALVPGCGTGY-----DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTW------C---- 170 (231)
Q Consensus 106 ~~~~~~vLDiGcG~G~-----~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~------~---- 170 (231)
.+.++++|-.|-..-+ .+..+.+.|+++...=..++.-+..++..+..+ .-.++++|+.+. +
T Consensus 3 ~L~GK~~lI~Gvan~rSIAwGIAk~l~~~GAeL~fTy~~e~l~krv~~la~~~~---s~~v~~cDV~~d~~i~~~f~~i~ 79 (259)
T COG0623 3 LLEGKRILIMGVANNRSIAWGIAKALAEQGAELAFTYQGERLEKRVEELAEELG---SDLVLPCDVTNDESIDALFATIK 79 (259)
T ss_pred ccCCceEEEEEecccccHHHHHHHHHHHcCCEEEEEeccHHHHHHHHHHHhhcc---CCeEEecCCCCHHHHHHHHHHHH
Confidence 3456788888877642 234455588888777777776666666665553 234688888771 1
Q ss_pred -CCCceeEEEeCCcccc---------------------cChHHHHHHHHHHHhhcCCCcEEEEEEccCCCC
Q 026903 171 -PTELFDLIFDYTFFCA---------------------IEPEMRAAWAQKIKDFLKPDGELITLMFPISDH 219 (231)
Q Consensus 171 -~~~~fD~i~~~~~~~~---------------------~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~ 219 (231)
.=+.+|.++....|.. ++.-....+.+.+..+|.+||-++..+|-...+
T Consensus 80 ~~~g~lD~lVHsIaFa~k~el~G~~~dtsre~f~~a~~IS~YS~~~lak~a~~lM~~ggSiltLtYlgs~r 150 (259)
T COG0623 80 KKWGKLDGLVHSIAFAPKEELKGDYLDTSREGFLIAMDISAYSFTALAKAARPLMNNGGSILTLTYLGSER 150 (259)
T ss_pred HhhCcccEEEEEeccCChHHhCCcccccCHHHHHhHhhhhHhhHHHHHHHHHHhcCCCCcEEEEEecccee
Confidence 1147888885433321 111122577888889999999999999977543
No 485
>PRK00094 gpsA NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Validated
Probab=84.51 E-value=6.9 Score=32.45 Aligned_cols=94 Identities=14% Similarity=0.078 Sum_probs=55.2
Q ss_pred cEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCC------CCCceEEEEccCCCCCCCCceeEEEeCC
Q 026903 111 RALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSLP------NAKFVSFLKADFFTWCPTELFDLIFDYT 182 (231)
Q Consensus 111 ~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~------~~~~i~~~~~d~~~~~~~~~fD~i~~~~ 182 (231)
+|.-+|+|. +..+..|++.|..|+.+|.++..++..++...... ...++.+. .+..+. ....|+|+..
T Consensus 3 kI~iiG~G~mG~~~a~~L~~~g~~V~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~--~~~~D~vi~~- 78 (325)
T PRK00094 3 KIAVLGAGSWGTALAIVLARNGHDVTLWARDPEQAAEINADRENPRYLPGIKLPDNLRAT-TDLAEA--LADADLILVA- 78 (325)
T ss_pred EEEEECCCHHHHHHHHHHHhCCCEEEEEECCHHHHHHHHHcCcccccCCCCcCCCCeEEe-CCHHHH--HhCCCEEEEe-
Confidence 677888875 34455566688899999999888776665321100 00011111 111111 1356888743
Q ss_pred cccccChHHHHHHHHHHHhhcCCCcEEEEE
Q 026903 183 FFCAIEPEMRAAWAQKIKDFLKPDGELITL 212 (231)
Q Consensus 183 ~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~ 212 (231)
+++.....++..+...++++.+++..
T Consensus 79 ----v~~~~~~~v~~~l~~~~~~~~~vi~~ 104 (325)
T PRK00094 79 ----VPSQALREVLKQLKPLLPPDAPIVWA 104 (325)
T ss_pred ----CCHHHHHHHHHHHHhhcCCCCEEEEE
Confidence 33345567788888888888776644
No 486
>PF06460 NSP13: Coronavirus NSP13; InterPro: IPR009461 This domain covers the NSP13 region of the coronavirus polyprotein. This protein has the predicted function of an mRNA cap-1 methyltransferase []. The human coronavirus 229E (HCoV-229E) replicase gene-encoded nonstructural protein 13 (nsp13) contains an N-terminal zinc-binding domain and a C-terminal superfamily 1 helicase domain []. All natural ribonucleotides and nucleotides are substrates of nsp13, with ATP, dATP, and GTP being hydrolyzed most efficiently. Using the NTPase active site, HCoV-229E nsp13 also mediates RNA 5'-triphosphatase activity, which may be involved in the capping of viral RNAs.; GO: 0003968 RNA-directed RNA polymerase activity, 0004197 cysteine-type endopeptidase activity, 0008168 methyltransferase activity, 0008233 peptidase activity, 0016817 hydrolase activity, acting on acid anhydrides, 0016896 exoribonuclease activity, producing 5'-phosphomonoesters; PDB: 2XYV_A 2XYR_A 3R24_A 2XYQ_A.
Probab=84.47 E-value=4.4 Score=32.75 Aligned_cols=90 Identities=21% Similarity=0.201 Sum_probs=50.9
Q ss_pred CCcEEEecCCCch-------HHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeC
Q 026903 109 KGRALVPGCGTGY-------DVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDY 181 (231)
Q Consensus 109 ~~~vLDiGcG~G~-------~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~ 181 (231)
.++||-+|+|+-. ...++...+..++-.|+.+- +++.-..+.+|.....++..+|+|++-
T Consensus 62 nMrVlHlGAgSdkGvaPGt~VLrqwlP~~ailvDnDi~d~-------------vSDa~~~~~~Dc~t~~~~~k~DlIiSD 128 (299)
T PF06460_consen 62 NMRVLHLGAGSDKGVAPGTAVLRQWLPEDAILVDNDIRDY-------------VSDADQSIVGDCRTYMPPDKFDLIISD 128 (299)
T ss_dssp T-EEEEES---TTSB-HHHHHHHHHS-TT-EEEEEESS---------------B-SSSEEEES-GGGEEESS-EEEEEE-
T ss_pred CcEEEEecccccCCcCCchHHHHHhCCCCcEEEecchhhh-------------ccccCCceeccccccCCCCcccEEEEe
Confidence 4899999999743 34455557788888888653 223345678898887778899999975
Q ss_pred Cc--------ccccChH-HHHHHHHHHHhhcCCCcEEEE
Q 026903 182 TF--------FCAIEPE-MRAAWAQKIKDFLKPDGELIT 211 (231)
Q Consensus 182 ~~--------~~~~~~~-~~~~~l~~~~~~L~pgG~l~~ 211 (231)
.- ....+.+ ...-+..-+.+.|+-||.+.+
T Consensus 129 mYd~~~k~~~~~n~~~~~fF~yl~~~i~~kLaLGGSvai 167 (299)
T PF06460_consen 129 MYDGRTKNCDGENNSKEGFFTYLCGFIKEKLALGGSVAI 167 (299)
T ss_dssp ---TTS-SS-S------THHHHHHHHHHHHEEEEEEEEE
T ss_pred cccccccccccccCCccccHHHHHHHHHhhhhcCceEEE
Confidence 32 1112222 223455667789999999876
No 487
>PRK11154 fadJ multifunctional fatty acid oxidation complex subunit alpha; Reviewed
Probab=84.46 E-value=5.9 Score=37.08 Aligned_cols=97 Identities=16% Similarity=0.138 Sum_probs=64.6
Q ss_pred CcEEEecCCC--chHHHHhc-CCCCeEEEEeCChHHHHHHHHHhccC-------C-C--------CCceEEEEccCCCCC
Q 026903 110 GRALVPGCGT--GYDVVAMA-SPERYVVGLEISDIAIKKAEELSSSL-------P-N--------AKFVSFLKADFFTWC 170 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~-~~~~~v~~iD~s~~~i~~a~~~~~~~-------~-~--------~~~i~~~~~d~~~~~ 170 (231)
.+|.-||+|+ ...+..++ ..|..|+.+|.+++.++.+.+++... + . ..++++. .|. +.
T Consensus 310 ~~v~ViGaG~mG~giA~~~a~~~G~~V~l~d~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~-~~~-~~- 386 (708)
T PRK11154 310 NKVGVLGGGLMGGGIAYVTATKAGLPVRIKDINPQGINHALKYSWDLLDKKVKRRHLKPSERDKQMALISGT-TDY-RG- 386 (708)
T ss_pred cEEEEECCchhhHHHHHHHHHHcCCeEEEEeCCHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHhcEEEe-CCh-HH-
Confidence 5899999998 35555566 67999999999999988876544321 1 0 0133333 122 11
Q ss_pred CCCceeEEEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEE
Q 026903 171 PTELFDLIFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 171 ~~~~fD~i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~ 213 (231)
-...|+|+= .+++.+ +.+.++++++-+.++|+.+|...+
T Consensus 387 -~~~aDlViE-av~E~~--~~K~~v~~~le~~~~~~~ilasnT 425 (708)
T PRK11154 387 -FKHADVVIE-AVFEDL--ALKQQMVAEVEQNCAPHTIFASNT 425 (708)
T ss_pred -hccCCEEee-cccccH--HHHHHHHHHHHhhCCCCcEEEECC
Confidence 135788873 234443 677899999999999999887644
No 488
>cd08240 6_hydroxyhexanoate_dh_like 6-hydroxyhexanoate dehydrogenase. 6-hydroxyhexanoate dehydrogenase, an enzyme of the zinc-dependent alcohol dehydrogenase-like family of medium chain dehydrogenases/reductases catalyzes the conversion of 6-hydroxyhexanoate and NAD(+) to 6-oxohexanoate + NADH and H+. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. ADH is a member of the medium chain alcohol dehydrogenase family (MDR), which has a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The NAD(H)-binding region is comprised of 2 structurally similar halves, each of which contacts a mononucleotide. A GxGxxG motif after the first mononucleotide contact half allows the close contact of the coenzy
Probab=84.40 E-value=2.3 Score=35.62 Aligned_cols=91 Identities=15% Similarity=0.201 Sum_probs=55.8
Q ss_pred CCCcEEEecCCC-chHHHHhcC-CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC-------CCCCCceeE
Q 026903 108 PKGRALVPGCGT-GYDVVAMAS-PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT-------WCPTELFDL 177 (231)
Q Consensus 108 ~~~~vLDiGcG~-G~~~~~l~~-~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~-------~~~~~~fD~ 177 (231)
++.+||-.|+|. |..+..+++ .|. +|+.++.+++..+.+.+. .. + .++...-.+ .... .+|+
T Consensus 175 ~~~~vlI~g~g~vg~~~~~~a~~~G~~~v~~~~~~~~~~~~~~~~-g~----~--~~~~~~~~~~~~~~~~~~~~-~~d~ 246 (350)
T cd08240 175 ADEPVVIIGAGGLGLMALALLKALGPANIIVVDIDEAKLEAAKAA-GA----D--VVVNGSDPDAAKRIIKAAGG-GVDA 246 (350)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCCeEEEEeCCHHHHHHHHHh-CC----c--EEecCCCccHHHHHHHHhCC-CCcE
Confidence 457888887753 556666666 777 799999988887777542 11 0 122211111 1122 6899
Q ss_pred EEeCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEc
Q 026903 178 IFDYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMF 214 (231)
Q Consensus 178 i~~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~ 214 (231)
++..... ...+....+.|+++|.++....
T Consensus 247 vid~~g~--------~~~~~~~~~~l~~~g~~v~~g~ 275 (350)
T cd08240 247 VIDFVNN--------SATASLAFDILAKGGKLVLVGL 275 (350)
T ss_pred EEECCCC--------HHHHHHHHHHhhcCCeEEEECC
Confidence 8843221 1347788999999999876543
No 489
>PF03514 GRAS: GRAS domain family; InterPro: IPR005202 Sequence analysis of the products of the GRAS (GAI, RGA, SCR) gene family indicates that they share a variable N terminus and a highly conserved C terminus that contains five recognizable motifs []. Proteins in the GRAS family are transcription factors that seem to be involved in development and other processes. Mutation of the SCARECROW (SCR) gene results in a radial pattern defect, loss of a ground tissue layer, in the root. The PAT1 protein is involved in phytochrome A signal transduction []. GRAS proteins contain a conserved region of about 350 amino acids that can be divided in 5 motifs, found in the following order: leucine heptad repeat I, the VHIID motif, leucine heptad repeat II, the PFYRE motif and the SAW motif [, ]. Plant specific GRAS proteins have parallels in their motif structure to the animal Signal Transducers and Activators of Transcription (STAT) family of proteins [] which suggests also some parallels in their functions.
Probab=84.26 E-value=10 Score=32.52 Aligned_cols=115 Identities=14% Similarity=0.081 Sum_probs=63.0
Q ss_pred CCCcEEEecCCCch----HHHHhcC-----CCCeEEEEeC----ChHHHHHHHHHhccCC--CCCceEEEEc---cCCCC
Q 026903 108 PKGRALVPGCGTGY----DVVAMAS-----PERYVVGLEI----SDIAIKKAEELSSSLP--NAKFVSFLKA---DFFTW 169 (231)
Q Consensus 108 ~~~~vLDiGcG~G~----~~~~l~~-----~~~~v~~iD~----s~~~i~~a~~~~~~~~--~~~~i~~~~~---d~~~~ 169 (231)
..-+|+|+|.|.|. +...|+. +..++++++. +...++...+++.+.. +.-..+|... ++.+.
T Consensus 110 ~~vHIID~~i~~G~QW~~LiqaLa~R~~gpp~LrIT~i~~~~~~~~~~l~~~g~rL~~fA~~lgv~fef~~v~~~~~e~l 189 (374)
T PF03514_consen 110 RRVHIIDFGIGFGVQWPSLIQALASRPGGPPSLRITGIGPPNSGSADELQETGRRLAEFARSLGVPFEFHPVVVESLEDL 189 (374)
T ss_pred cceEEEeccCCcchHHHHHHHHHhcCCCCCCeEEEEeccCCCCCcHHHHHHHHHHHHHHHHHcCccEEEEecccCchhhC
Confidence 34699999999994 3455554 2238999999 7777766666543321 1112344332 22222
Q ss_pred C------CCCceeEEEeCCcccccCh------HHHHHHHHHHHhhcCCCcEEEEEEccCCCCCCCCCCC
Q 026903 170 C------PTELFDLIFDYTFFCAIEP------EMRAAWAQKIKDFLKPDGELITLMFPISDHVGGPPYK 226 (231)
Q Consensus 170 ~------~~~~fD~i~~~~~~~~~~~------~~~~~~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~ 226 (231)
. ..+..=+|-|...+||+.. ..+..+|+.+ +.|+|.-++ +++.. .+.+.|+|-
T Consensus 190 ~~~~l~~~~~E~laVn~~~~Lh~l~~~~~~~~~~~~~~L~~i-r~L~P~vvv-~~E~e--a~~n~~~F~ 254 (374)
T PF03514_consen 190 DPSMLRLRPGEALAVNCMFQLHHLLDESGALENPRDAFLRVI-RSLNPKVVV-LVEQE--ADHNSPSFL 254 (374)
T ss_pred CHHHhCccCCcEEEEEeehhhhhhccccccccchHHHHHHHH-HhcCCCEEE-EEeec--CCCCCCchH
Confidence 1 1233444445566788752 1244566555 477999544 44443 334556653
No 490
>PRK09072 short chain dehydrogenase; Provisional
Probab=84.25 E-value=7.1 Score=31.16 Aligned_cols=74 Identities=11% Similarity=0.065 Sum_probs=50.6
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC----------CCc
Q 026903 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP----------TEL 174 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~----------~~~ 174 (231)
+++++|-.|++.| ..+..+++.|.+|++++.+++.++...... .. ..++.++.+|+.+... -+.
T Consensus 4 ~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~r~~~~~~~~~~~~-~~--~~~~~~~~~D~~d~~~~~~~~~~~~~~~~ 80 (263)
T PRK09072 4 KDKRVLLTGASGGIGQALAEALAAAGARLLLVGRNAEKLEALAARL-PY--PGRHRWVVADLTSEAGREAVLARAREMGG 80 (263)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEECCHHHHHHHHHHH-hc--CCceEEEEccCCCHHHHHHHHHHHHhcCC
Confidence 4568888887654 244555668999999999988776665444 21 2468899999988321 145
Q ss_pred eeEEEeCCcc
Q 026903 175 FDLIFDYTFF 184 (231)
Q Consensus 175 fD~i~~~~~~ 184 (231)
.|.++.+...
T Consensus 81 id~lv~~ag~ 90 (263)
T PRK09072 81 INVLINNAGV 90 (263)
T ss_pred CCEEEECCCC
Confidence 7999887544
No 491
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=84.14 E-value=9.8 Score=31.88 Aligned_cols=101 Identities=19% Similarity=0.108 Sum_probs=60.2
Q ss_pred CCCCcEEEecCC-CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEE-EccCCCCCCCCceeEEEeCCc
Q 026903 107 LPKGRALVPGCG-TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFL-KADFFTWCPTELFDLIFDYTF 183 (231)
Q Consensus 107 ~~~~~vLDiGcG-~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~-~~d~~~~~~~~~fD~i~~~~~ 183 (231)
.|+++|--+|.| -|..+..+++ .|.+|+++|-+..--+.+-+.+.... -+.+. ..|+.+.. .+..|.++..-.
T Consensus 180 ~pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~~kkeea~~~LGAd~---fv~~~~d~d~~~~~-~~~~dg~~~~v~ 255 (360)
T KOG0023|consen 180 GPGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSSKKKEEAIKSLGADV---FVDSTEDPDIMKAI-MKTTDGGIDTVS 255 (360)
T ss_pred CCCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCchhHHHHHHhcCcce---eEEecCCHHHHHHH-HHhhcCcceeee
Confidence 366666666654 6999999998 89999999999866666655543221 12221 12222211 123444332111
Q ss_pred ccccChHHHHHHHHHHHhhcCCCcEEEEEEccCC
Q 026903 184 FCAIEPEMRAAWAQKIKDFLKPDGELITLMFPIS 217 (231)
Q Consensus 184 ~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~~~ 217 (231)
.+ ....+..+..+||++|.++++..+..
T Consensus 256 --~~----a~~~~~~~~~~lk~~Gt~V~vg~p~~ 283 (360)
T KOG0023|consen 256 --NL----AEHALEPLLGLLKVNGTLVLVGLPEK 283 (360)
T ss_pred --ec----cccchHHHHHHhhcCCEEEEEeCcCC
Confidence 01 01235668899999999999988775
No 492
>PRK12742 oxidoreductase; Provisional
Probab=83.92 E-value=18 Score=28.10 Aligned_cols=100 Identities=12% Similarity=0.040 Sum_probs=54.7
Q ss_pred CCCCcEEEecCCCc--h-HHHHhcCCCCeEEEEeC-ChHHHHHHHHHhccCCCCCceEEEEccCCCCC-------CCCce
Q 026903 107 LPKGRALVPGCGTG--Y-DVVAMASPERYVVGLEI-SDIAIKKAEELSSSLPNAKFVSFLKADFFTWC-------PTELF 175 (231)
Q Consensus 107 ~~~~~vLDiGcG~G--~-~~~~l~~~~~~v~~iD~-s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~-------~~~~f 175 (231)
+.+++||-.|++.| . .+..|++.|.+|+.+.. +++..+...+.. .+.++..|+.+.. ..+.+
T Consensus 4 ~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~~~~~~~~~~l~~~~-------~~~~~~~D~~~~~~~~~~~~~~~~i 76 (237)
T PRK12742 4 FTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTYAGSKDAAERLAQET-------GATAVQTDSADRDAVIDVVRKSGAL 76 (237)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHCCCEEEEecCCCHHHHHHHHHHh-------CCeEEecCCCCHHHHHHHHHHhCCC
Confidence 34578998887554 2 33445558888887754 344333322221 2456778876621 12458
Q ss_pred eEEEeCCccccc------ChHHH-----------HHHHHHHHhhcCCCcEEEEEE
Q 026903 176 DLIFDYTFFCAI------EPEMR-----------AAWAQKIKDFLKPDGELITLM 213 (231)
Q Consensus 176 D~i~~~~~~~~~------~~~~~-----------~~~l~~~~~~L~pgG~l~~~~ 213 (231)
|+++.+...... +.++. ..+++.+...++.+|.+++..
T Consensus 77 d~li~~ag~~~~~~~~~~~~~~~~~~~~~n~~~~~~l~~~~~~~~~~~g~iv~is 131 (237)
T PRK12742 77 DILVVNAGIAVFGDALELDADDIDRLFKINIHAPYHASVEAARQMPEGGRIIIIG 131 (237)
T ss_pred cEEEECCCCCCCCCcccCCHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 998877543221 12221 123355666677778776543
No 493
>KOG1197 consensus Predicted quinone oxidoreductase [Energy production and conversion; General function prediction only]
Probab=83.84 E-value=3.7 Score=33.26 Aligned_cols=96 Identities=17% Similarity=0.180 Sum_probs=65.7
Q ss_pred CCCCcEEE--ecCCCchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCC----CCCCCceeEEE
Q 026903 107 LPKGRALV--PGCGTGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFT----WCPTELFDLIF 179 (231)
Q Consensus 107 ~~~~~vLD--iGcG~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~----~~~~~~fD~i~ 179 (231)
.++..||- ...|.|....++++ .+.++++.--+.+-.+.|+++-..+. |....-|+.+ .......|+++
T Consensus 145 kpGhtVlvhaAAGGVGlll~Ql~ra~~a~tI~~asTaeK~~~akenG~~h~----I~y~~eD~v~~V~kiTngKGVd~vy 220 (336)
T KOG1197|consen 145 KPGHTVLVHAAAGGVGLLLCQLLRAVGAHTIATASTAEKHEIAKENGAEHP----IDYSTEDYVDEVKKITNGKGVDAVY 220 (336)
T ss_pred CCCCEEEEEeccccHHHHHHHHHHhcCcEEEEEeccHHHHHHHHhcCCcce----eeccchhHHHHHHhccCCCCceeee
Confidence 35555554 45567888888887 78899999999999999998876553 4445555544 22345789988
Q ss_pred eCCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 180 DYTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 180 ~~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
.+-.- .-++.-..+|||+|.++.....
T Consensus 221 DsvG~---------dt~~~sl~~Lk~~G~mVSfG~a 247 (336)
T KOG1197|consen 221 DSVGK---------DTFAKSLAALKPMGKMVSFGNA 247 (336)
T ss_pred ccccc---------hhhHHHHHHhccCceEEEeccc
Confidence 54332 2346677899999998765443
No 494
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=83.81 E-value=4.8 Score=33.37 Aligned_cols=93 Identities=15% Similarity=0.168 Sum_probs=54.6
Q ss_pred CcEEEecCCC--chHHHHhcCCCCeEEEEeCChHHHHHHHHHhccC-CC----------CCceEEEEccCCCCCCCCcee
Q 026903 110 GRALVPGCGT--GYDVVAMASPERYVVGLEISDIAIKKAEELSSSL-PN----------AKFVSFLKADFFTWCPTELFD 176 (231)
Q Consensus 110 ~~vLDiGcG~--G~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~-~~----------~~~i~~~~~d~~~~~~~~~fD 176 (231)
.+|.-||+|. +..+..++..|..|+++|.+++.++.+++..... +. ..++.+ ..|..+. ....|
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~~~~--~~~aD 81 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVVLIDVMEGALERARGVIERALGVYAPLGIASAGMGRIRM-EAGLAAA--VSGAD 81 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEEEEECCHHHHHHHHHHHHHHHHHhhhcccHHHHhhceEE-eCCHHHH--hccCC
Confidence 4788899985 3455666678889999999999988877632110 00 001111 1121111 13568
Q ss_pred EEEeCCcccccCh--HHHHHHHHHHHhhcCCCcEEE
Q 026903 177 LIFDYTFFCAIEP--EMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 177 ~i~~~~~~~~~~~--~~~~~~l~~~~~~L~pgG~l~ 210 (231)
+|+.. +++ +....++..+...++++.+++
T Consensus 82 lVi~a-----v~~~~~~~~~v~~~l~~~~~~~~ii~ 112 (311)
T PRK06130 82 LVIEA-----VPEKLELKRDVFARLDGLCDPDTIFA 112 (311)
T ss_pred EEEEe-----ccCcHHHHHHHHHHHHHhCCCCcEEE
Confidence 88742 222 235677888887777766544
No 495
>PRK08507 prephenate dehydrogenase; Validated
Probab=83.81 E-value=5.2 Score=32.57 Aligned_cols=83 Identities=25% Similarity=0.251 Sum_probs=49.3
Q ss_pred cEEEecCCC--chHHHHhcCCCC--eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCCCCceeEEEeCCcccc
Q 026903 111 RALVPGCGT--GYDVVAMASPER--YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCPTELFDLIFDYTFFCA 186 (231)
Q Consensus 111 ~vLDiGcG~--G~~~~~l~~~~~--~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~~~~fD~i~~~~~~~~ 186 (231)
+|.-||+|. |.++..+.+.|. .|+++|.+++.++.+.+. +. +.. ..+..+. . ..|+|+..
T Consensus 2 ~I~iIG~G~mG~sla~~l~~~g~~~~v~~~d~~~~~~~~~~~~----g~---~~~-~~~~~~~--~-~aD~Vila----- 65 (275)
T PRK08507 2 KIGIIGLGLMGGSLGLALKEKGLISKVYGYDHNELHLKKALEL----GL---VDE-IVSFEEL--K-KCDVIFLA----- 65 (275)
T ss_pred EEEEEccCHHHHHHHHHHHhcCCCCEEEEEcCCHHHHHHHHHC----CC---Ccc-cCCHHHH--h-cCCEEEEe-----
Confidence 566788876 445566666664 799999999887766532 11 101 1121121 1 26887732
Q ss_pred cChHHHHHHHHHHHhhcCCCcEEE
Q 026903 187 IEPEMRAAWAQKIKDFLKPDGELI 210 (231)
Q Consensus 187 ~~~~~~~~~l~~~~~~L~pgG~l~ 210 (231)
++++....++..+.. ++++..++
T Consensus 66 vp~~~~~~~~~~l~~-l~~~~iv~ 88 (275)
T PRK08507 66 IPVDAIIEILPKLLD-IKENTTII 88 (275)
T ss_pred CcHHHHHHHHHHHhc-cCCCCEEE
Confidence 455556677777777 77776443
No 496
>PRK09186 flagellin modification protein A; Provisional
Probab=83.80 E-value=6.3 Score=31.20 Aligned_cols=75 Identities=17% Similarity=0.100 Sum_probs=47.6
Q ss_pred CCCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC------C-----CC
Q 026903 108 PKGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC------P-----TE 173 (231)
Q Consensus 108 ~~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~------~-----~~ 173 (231)
.+++||-.|++.| ..+..|++.|.+|+.++.+++.++...+.+........+.++.+|+.+.. . -+
T Consensus 3 ~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~r~~~~~~~~~~~l~~~~~~~~~~~~~~Dl~d~~~~~~~~~~~~~~~~ 82 (256)
T PRK09186 3 KGKTILITGAGGLIGSALVKAILEAGGIVIAADIDKEALNELLESLGKEFKSKKLSLVELDITDQESLEEFLSKSAEKYG 82 (256)
T ss_pred CCCEEEEECCCchHHHHHHHHHHHCCCEEEEEecChHHHHHHHHHHHhhcCCCceeEEEecCCCHHHHHHHHHHHHHHcC
Confidence 3568888887554 22444555889999999988777665544422111234677889998721 1 13
Q ss_pred ceeEEEeCC
Q 026903 174 LFDLIFDYT 182 (231)
Q Consensus 174 ~fD~i~~~~ 182 (231)
..|+++.+.
T Consensus 83 ~id~vi~~A 91 (256)
T PRK09186 83 KIDGAVNCA 91 (256)
T ss_pred CccEEEECC
Confidence 479998765
No 497
>PRK05855 short chain dehydrogenase; Validated
Probab=83.78 E-value=16 Score=32.70 Aligned_cols=74 Identities=19% Similarity=0.219 Sum_probs=49.8
Q ss_pred CCcEEEecCCCc---hHHHHhcCCCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC-----------CCc
Q 026903 109 KGRALVPGCGTG---YDVVAMASPERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP-----------TEL 174 (231)
Q Consensus 109 ~~~vLDiGcG~G---~~~~~l~~~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~-----------~~~ 174 (231)
+.++|-+|+..| ..+..|++.|.+|+.++.+....+...+.....+ .++.++.+|+.+... .+.
T Consensus 315 ~~~~lv~G~s~giG~~~a~~l~~~G~~v~~~~r~~~~~~~~~~~~~~~~--~~~~~~~~Dv~~~~~~~~~~~~~~~~~g~ 392 (582)
T PRK05855 315 GKLVVVTGAGSGIGRETALAFAREGAEVVASDIDEAAAERTAELIRAAG--AVAHAYRVDVSDADAMEAFAEWVRAEHGV 392 (582)
T ss_pred CCEEEEECCcCHHHHHHHHHHHHCCCEEEEEeCCHHHHHHHHHHHHhcC--CeEEEEEcCCCCHHHHHHHHHHHHHhcCC
Confidence 367888887544 2344455689999999999877666555443332 358889999988321 236
Q ss_pred eeEEEeCCcc
Q 026903 175 FDLIFDYTFF 184 (231)
Q Consensus 175 fD~i~~~~~~ 184 (231)
.|+++.+...
T Consensus 393 id~lv~~Ag~ 402 (582)
T PRK05855 393 PDIVVNNAGI 402 (582)
T ss_pred CcEEEECCcc
Confidence 8999987654
No 498
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=83.73 E-value=0.93 Score=34.41 Aligned_cols=39 Identities=21% Similarity=0.152 Sum_probs=28.7
Q ss_pred CCCCCcEEEecCCC-chHHHHhcC-CCCeEEEEeCChHHHH
Q 026903 106 ALPKGRALVPGCGT-GYDVVAMAS-PERYVVGLEISDIAIK 144 (231)
Q Consensus 106 ~~~~~~vLDiGcG~-G~~~~~l~~-~~~~v~~iD~s~~~i~ 144 (231)
.+.+.+|.-+|+|. |+....+++ .|.+|+++|.+.....
T Consensus 33 ~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~~~~~ 73 (178)
T PF02826_consen 33 ELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSPKPEE 73 (178)
T ss_dssp -STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSCHHHH
T ss_pred ccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccCChhh
Confidence 45578999999986 555555554 8889999999988655
No 499
>PRK10083 putative oxidoreductase; Provisional
Probab=83.70 E-value=3.1 Score=34.64 Aligned_cols=97 Identities=15% Similarity=0.154 Sum_probs=56.4
Q ss_pred CCCCcEEEecCCC-chHHHHhcC--CCC-eEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCCC--CCceeEEEe
Q 026903 107 LPKGRALVPGCGT-GYDVVAMAS--PER-YVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWCP--TELFDLIFD 180 (231)
Q Consensus 107 ~~~~~vLDiGcG~-G~~~~~l~~--~~~-~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~~--~~~fD~i~~ 180 (231)
.++.+||-.|+|. |..+..+++ .|. .++++|.+++..+.+++.-...- +.....++..... ...+|+|+.
T Consensus 159 ~~g~~vlI~g~g~vG~~~~~~a~~~~G~~~v~~~~~~~~~~~~~~~~Ga~~~----i~~~~~~~~~~~~~~g~~~d~vid 234 (339)
T PRK10083 159 TEQDVALIYGAGPVGLTIVQVLKGVYNVKAVIVADRIDERLALAKESGADWV----INNAQEPLGEALEEKGIKPTLIID 234 (339)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHhCCCCEEEEEcCCHHHHHHHHHhCCcEE----ecCccccHHHHHhcCCCCCCEEEE
Confidence 3457888899764 556666666 377 58889999988888776422110 1111111111111 113457764
Q ss_pred CCcccccChHHHHHHHHHHHhhcCCCcEEEEEEcc
Q 026903 181 YTFFCAIEPEMRAAWAQKIKDFLKPDGELITLMFP 215 (231)
Q Consensus 181 ~~~~~~~~~~~~~~~l~~~~~~L~pgG~l~~~~~~ 215 (231)
...- ...+....++|+++|.++.....
T Consensus 235 ~~g~--------~~~~~~~~~~l~~~G~~v~~g~~ 261 (339)
T PRK10083 235 AACH--------PSILEEAVTLASPAARIVLMGFS 261 (339)
T ss_pred CCCC--------HHHHHHHHHHhhcCCEEEEEccC
Confidence 2210 12467788999999999887654
No 500
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=83.66 E-value=3.7 Score=34.00 Aligned_cols=96 Identities=14% Similarity=0.006 Sum_probs=66.9
Q ss_pred CchHHHHhcC-CCCeEEEEeCChHHHHHHHHHhccCCCCCceEEEEccCCCCC---CCCceeEEEeCCcccccChHHHHH
Q 026903 119 TGYDVVAMAS-PERYVVGLEISDIAIKKAEELSSSLPNAKFVSFLKADFFTWC---PTELFDLIFDYTFFCAIEPEMRAA 194 (231)
Q Consensus 119 ~G~~~~~l~~-~~~~v~~iD~s~~~i~~a~~~~~~~~~~~~i~~~~~d~~~~~---~~~~fD~i~~~~~~~~~~~~~~~~ 194 (231)
.|...-++++ .|.+|+|+--+++-++++.+.+. .+.-|+....|+.+.. .++..|+.|-+ +- -.
T Consensus 163 VGsvvgQiAKlkG~rVVGiaGg~eK~~~l~~~lG---fD~~idyk~~d~~~~L~~a~P~GIDvyfeN-----VG----g~ 230 (340)
T COG2130 163 VGSVVGQIAKLKGCRVVGIAGGAEKCDFLTEELG---FDAGIDYKAEDFAQALKEACPKGIDVYFEN-----VG----GE 230 (340)
T ss_pred cchHHHHHHHhhCCeEEEecCCHHHHHHHHHhcC---CceeeecCcccHHHHHHHHCCCCeEEEEEc-----CC----ch
Confidence 4888889998 88999999999999999987442 2223555555555511 23579998843 22 23
Q ss_pred HHHHHHhhcCCCcEEEEEEccCCCCCCCCCCC
Q 026903 195 WAQKIKDFLKPDGELITLMFPISDHVGGPPYK 226 (231)
Q Consensus 195 ~l~~~~~~L~pgG~l~~~~~~~~~~~~~~~~~ 226 (231)
.++.+...|++.+++.++.....+....+|+.
T Consensus 231 v~DAv~~~ln~~aRi~~CG~IS~YN~~~~~~g 262 (340)
T COG2130 231 VLDAVLPLLNLFARIPVCGAISQYNAPELPPG 262 (340)
T ss_pred HHHHHHHhhccccceeeeeehhhcCCCCCCCC
Confidence 46778899999999998877665554555544
Done!