BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026904
(231 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q6PBN4|CQ10X_DANRE Coenzyme Q-binding protein COQ10 homolog, mitochondrial OS=Danio
rerio GN=zgc:73324 PE=2 SV=2
Length = 233
Score = 113 bits (282), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 52/121 (42%), Positives = 76/121 (62%), Gaps = 1/121 (0%)
Query: 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESY 159
Y E R + YSPEQ++DVVA V+ Y FVPWC++S++ + +G A+LEIGF +VE Y
Sbjct: 78 YSESRSINYSPEQMYDVVANVEQYQQFVPWCKKSKVTRGR-NGDMRAQLEIGFPPIVERY 136
Query: 160 VSHVELNRPKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMV 219
S V + V+ +D SLF+HL +W F PG + +CN+ F V F+F S L+ Q+
Sbjct: 137 TSEVTVIPNHQVRAVCTDGSLFNHLETLWRFTPGAAGQSCNVEFFVTFEFKSLLHSQLAT 196
Query: 220 L 220
+
Sbjct: 197 M 197
>sp|Q5RD79|CQ10B_PONAB Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Pongo
abelii GN=COQ10B PE=2 SV=1
Length = 238
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVE 157
K Y ERR+LGYS ++++DVV+ V+ Y FVPWC++S+++ G LEIGF ++E
Sbjct: 76 KEYSERRILGYSMQEMYDVVSGVEDYKHFVPWCKKSDVISKR-SGYCKTRLEIGFPPVLE 134
Query: 158 SYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPG-PS-PGTCNLYFLVDFKFHSPLYR 215
Y S V L +P VK + +D LF+HL IW F+PG P P TC L F + F+F S L+
Sbjct: 135 RYTSVVTLVKPHLVKASCTDGRLFNHLETIWRFSPGLPGYPRTCTLDFSISFEFRSLLHS 194
Query: 216 QVMVL 220
Q+ L
Sbjct: 195 QLATL 199
>sp|Q9H8M1|CQ10B_HUMAN Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Homo
sapiens GN=COQ10B PE=2 SV=1
Length = 238
Score = 112 bits (279), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 56/125 (44%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVE 157
K Y ERR+LGYS ++++DVV+ V+ Y FVPWC++S+++ G LEIGF ++E
Sbjct: 76 KEYSERRILGYSMQEMYDVVSGVEDYKHFVPWCKKSDVISKR-SGYCKTRLEIGFPPVLE 134
Query: 158 SYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPG-PS-PGTCNLYFLVDFKFHSPLYR 215
Y S V L +P VK + +D LF+HL IW F+PG P P TC L F + F+F S L+
Sbjct: 135 RYTSVVTLVKPHLVKASCTDGRLFNHLETIWRFSPGLPGYPRTCTLDFSISFEFRSLLHS 194
Query: 216 QVMVL 220
Q+ L
Sbjct: 195 QLATL 199
>sp|Q3THF9|CQ10B_MOUSE Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Mus
musculus GN=Coq10b PE=2 SV=1
Length = 240
Score = 111 bits (278), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVE 157
K Y ERR+LGYS ++++DVV+ ++ Y FVPWC++S+I+ G LE+GF ++E
Sbjct: 78 KEYSERRILGYSMQEMYDVVSGMEDYQHFVPWCKKSDIISRR-SGYCKTRLEVGFPPVLE 136
Query: 158 SYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPG-PS-PGTCNLYFLVDFKFHSPLYR 215
Y S V L +P VK + +D LF+HL IW F+PG P P TC L F + F+F S L+
Sbjct: 137 RYTSIVTLVKPHLVKASCTDGKLFNHLETIWRFSPGLPGYPRTCTLDFSISFEFRSLLHS 196
Query: 216 QVMVL 220
Q+ L
Sbjct: 197 QLATL 201
>sp|Q5I0I9|CQ10B_RAT Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Rattus
norvegicus GN=Coq10b PE=2 SV=2
Length = 240
Score = 111 bits (277), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 55/125 (44%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVE 157
K Y ERR++GYS ++++DVV+ ++ Y FVPWC++S+IL G LEIGF ++E
Sbjct: 78 KEYSERRIIGYSMQEMYDVVSGMEDYKHFVPWCKKSDILSRR-SGYCKTRLEIGFPPVLE 136
Query: 158 SYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPG-PS-PGTCNLYFLVDFKFHSPLYR 215
Y S V L +P VK + +D LF+HL +W F+PG P P TC L F + F+F S L+
Sbjct: 137 RYTSIVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGYPRTCTLDFSISFEFRSLLHS 196
Query: 216 QVMVL 220
Q+ L
Sbjct: 197 QLATL 201
>sp|Q96MF6|CQ10A_HUMAN Coenzyme Q-binding protein COQ10 homolog A, mitochondrial OS=Homo
sapiens GN=COQ10A PE=2 SV=2
Length = 247
Score = 109 bits (272), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 51/125 (40%), Positives = 79/125 (63%), Gaps = 3/125 (2%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVE 157
K Y ERR++GYS +++++VV+ V Y FVPWC++S ++ G A+LE+GF ++E
Sbjct: 85 KAYSERRIMGYSMQEMYEVVSNVQEYREFVPWCKKSLVVSSR-KGHLKAQLEVGFPPVME 143
Query: 158 SYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPG-PS-PGTCNLYFLVDFKFHSPLYR 215
Y S V + +P VK +D LF+HL IW F+PG P+ P TC + F + F+F S L+
Sbjct: 144 RYTSAVSMVKPHMVKAVCTDGKLFNHLETIWRFSPGIPAYPRTCTVDFSISFEFRSLLHS 203
Query: 216 QVMVL 220
Q+ +
Sbjct: 204 QLATM 208
>sp|Q567E6|CQ10B_DANRE Coenzyme Q-binding protein COQ10 homolog B, mitochondrial OS=Danio
rerio GN=coq10b PE=2 SV=1
Length = 238
Score = 107 bits (267), Expect = 6e-23, Method: Compositional matrix adjust.
Identities = 54/125 (43%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVE 157
K Y ERR++GYS +++++VVA V+ Y FVPWC++S+++ G A+L +GF +VE
Sbjct: 76 KEYSERRIIGYSMQEMYEVVAKVEDYLLFVPWCKKSDVIFRR-SGFCKAKLTVGFPPVVE 134
Query: 158 SYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPG-PS-PGTCNLYFLVDFKFHSPLYR 215
+Y S V RP VK + SD LF+HL +W F+PG P P TC L F + F+F S L+
Sbjct: 135 NYTSLVSTVRPHLVKASCSDGKLFNHLETVWRFSPGLPGYPRTCTLDFAISFEFRSLLHS 194
Query: 216 QVMVL 220
Q+ +
Sbjct: 195 QLATV 199
>sp|Q6DFA6|CQ10A_XENLA Coenzyme Q-binding protein COQ10 homolog A, mitochondrial
OS=Xenopus laevis GN=coq10b-a PE=2 SV=1
Length = 247
Score = 107 bits (267), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 52/125 (41%), Positives = 80/125 (64%), Gaps = 3/125 (2%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVE 157
K Y ERR++GYS +++++VV+ V+ Y FVPWC++S ++ G A+LE+GF ++E
Sbjct: 85 KEYSERRIMGYSMQEMYEVVSNVEEYKLFVPWCKKSTVISKR-TGYAKAQLEVGFPPILE 143
Query: 158 SYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPG-PS-PGTCNLYFLVDFKFHSPLYR 215
Y S + L RP VK +D LF+HL +IW F+PG P P TC + F + F+F S L+
Sbjct: 144 RYTSILTLVRPHLVKAVCTDGRLFNHLESIWRFSPGIPGYPRTCTVDFSISFEFRSLLHS 203
Query: 216 QVMVL 220
Q+ +
Sbjct: 204 QLATV 208
>sp|Q6GNP0|CQ10B_XENLA Coenzyme Q-binding protein COQ10 homolog B, mitochondrial
OS=Xenopus laevis GN=coq10b PE=2 SV=1
Length = 244
Score = 104 bits (259), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 57/136 (41%), Positives = 78/136 (57%), Gaps = 5/136 (3%)
Query: 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESY 159
Y E +VLG+S EQ++D+VA V Y FVPWC RS++L G AELE+GF +VE Y
Sbjct: 85 YSESKVLGFSIEQMYDIVADVQNYKIFVPWCNRSKVLSCK-KGVTRAELEVGFPPVVERY 143
Query: 160 VSHVELNRPKFVKTTASDSSLFDHLINIWEFNPGPS--PGTCNLYFLVDFKFHSPLYRQV 217
VS + + V+ D LF+HL +W F+PG S P TC L F V F+F S L+ +
Sbjct: 144 VSEISVIPLHQVRAVCCDGKLFNHLETVWRFSPGLSGRPDTCTLDFCVSFEFKSLLHSHL 203
Query: 218 MVLHL--VFHIMLCQY 231
+ V M+C +
Sbjct: 204 ASVFFDEVVKQMVCAF 219
>sp|Q556V1|COQ10_DICDI Coenzyme Q-binding protein COQ10, mitochondrial OS=Dictyostelium
discoideum GN=coq10-1 PE=3 SV=1
Length = 205
Score = 90.5 bits (223), Expect = 9e-18, Method: Compositional matrix adjust.
Identities = 56/163 (34%), Positives = 85/163 (52%), Gaps = 12/163 (7%)
Query: 66 SSLANFCQNN---GNVLQRRRFLGVGDGEEG------DVLSKVYEERRVLGYSPEQLFDV 116
S L + C NN G+ + G D + +++K E + L Y Q++ V
Sbjct: 14 SILKSGCNNNIGYGDRYFFNKLFGSNDASDTHNQPTTKIVTK--EMTKELKYPVNQVYSV 71
Query: 117 VAAVDLYHGFVPWCQRSEILKHNPDGS-FDAELEIGFKFLVESYVSHVELNRPKFVKTTA 175
+ V+ Y F+P+C S ILK D + F+AELE+G + ESYVS V KF+++TA
Sbjct: 72 IIKVEDYKEFLPFCLNSTILKREKDKNHFEAELEVGQGTIKESYVSKVVYKENKFIESTA 131
Query: 176 SDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVM 218
+D+ LF LIN W F G +P T + + ++F SP Y +M
Sbjct: 132 TDTPLFHKLINTWSFKQGQTPNTTIAHCKLIYQFKSPFYATLM 174
>sp|Q8MLL3|COQ10_DROME Coenzyme Q-binding protein COQ10, mitochondrial OS=Drosophila
melanogaster GN=Coq10 PE=2 SV=1
Length = 242
Score = 90.1 bits (222), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 50/133 (37%), Positives = 76/133 (57%), Gaps = 6/133 (4%)
Query: 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESY 159
Y ++ ++GYS + ++ VV+ V YH FVP+ +RS++ +G F A+L +GF L E+Y
Sbjct: 85 YTKKELVGYSMQDMYSVVSDVSNYHKFVPYVKRSDVHSRGSEG-FKADLIVGFPPLNEAY 143
Query: 160 VSHVELNRPKFVKTTASDSSLFDHLINIWEFNPGPS--PGTCNLYFLVDFKFHSPLYRQV 217
S V L P VK+ D LF++L+N W F PG P +C L F V F+F S L+ V
Sbjct: 144 TSQVTLVPPSLVKSECHDGRLFNYLLNEWSFKPGLKDIPNSCVLDFKVSFEFKSLLHSNV 203
Query: 218 MVLHLVFHIMLCQ 230
+F ++C
Sbjct: 204 AN---IFFDLICD 213
>sp|Q9USM9|COQ10_SCHPO Coenzyme Q-binding protein coq10, mitochondrial
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=coq10 PE=3 SV=1
Length = 164
Score = 62.4 bits (150), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 62/120 (51%), Gaps = 4/120 (3%)
Query: 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSF--DAELEIGFKFL 155
+ Y R++ Y P LF +++ V+ Y FVP+CQ+S++ +++P + A+L +GFK L
Sbjct: 11 ECYRASRLMPYKPSFLFSLISNVNEYERFVPFCQKSKVTEYDPKTGYPTKADLTVGFKGL 70
Query: 156 VESYVSHVELNRPKF-VKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLY 214
E++ S V + V AS LF L W S G + VDF+F S L+
Sbjct: 71 CETFDSKVVCDPVALTVLADASHHRLFRRLKTHWSIEEA-SRGRVRVDLEVDFEFASKLH 129
>sp|Q08058|COQ10_YEAST Coenzyme Q-binding protein COQ10, mitochondrial OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=COQ10 PE=1
SV=1
Length = 207
Score = 60.1 bits (144), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 40/146 (27%), Positives = 68/146 (46%), Gaps = 7/146 (4%)
Query: 81 RRRFLGVGDGEEGDVLSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNP 140
+R F G+ G + + Y R+ + P ++ V+ V Y F+P+C S + K NP
Sbjct: 28 KRNFFGLS-GTNHTIREQRYVLRKAINAPPSTVYAAVSEVAQYKEFIPYCVDSFVDKRNP 86
Query: 141 --DGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASDS---SLFDHLINIWEFNPGPS 195
+ A L +GFK E ++ +V T +++ +LF LI+ W P P+
Sbjct: 87 VDNKPLIAGLRVGFKQYDEEFICNVTCKDTDHTYTVVAETISHNLFHLLISKWTIMPHPN 146
Query: 196 -PGTCNLYFLVDFKFHSPLYRQVMVL 220
P + L+ FKF S +Y V ++
Sbjct: 147 RPNAAMVELLLRFKFKSRIYNSVSLI 172
>sp|Q9ZDZ7|RATA_RICPR Ribosome association toxin RatA OS=Rickettsia prowazekii (strain
Madrid E) GN=ratA PE=3 SV=1
Length = 146
Score = 57.4 bits (137), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 38/122 (31%), Positives = 65/122 (53%), Gaps = 6/122 (4%)
Query: 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESY 159
++ ++L Y P++LFD+V + Y F+PWC + I+ N + +EL I K L E Y
Sbjct: 4 FQHTKILPYKPKKLFDLVWDIKSYPQFLPWCAAARIISEN-NQEVISELVIQLKGLSEKY 62
Query: 160 VSHV---ELNRPKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQ 216
S V + ++ T + S F++L + W+F P S GT L F ++FK S + +
Sbjct: 63 NSRVINTITDNGIYLIDTVAISGPFEYLKSTWQFIPH-STGT-ELKFFINFKMTSVILDK 120
Query: 217 VM 218
++
Sbjct: 121 LI 122
>sp|Q75CC1|COQ10_ASHGO Coenzyme Q-binding protein COQ10, mitochondrial OS=Ashbya gossypii
(strain ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL
Y-1056) GN=COQ10 PE=3 SV=1
Length = 204
Score = 56.6 bits (135), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 43/148 (29%), Positives = 69/148 (46%), Gaps = 10/148 (6%)
Query: 77 NVLQRRRFLGVGDGEEGDVLSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEIL 136
+ + RR FLG G D + Y +RV ++ V+ V LY F+P+C S +
Sbjct: 22 SCVSRRTFLGFTGG---DTKEQRYILKRVFNAPLHYVYPAVSEVSLYKLFIPYCTDSFVN 78
Query: 137 KHNPDGSFDAE--LEIGFKFLVESYVSHVELNR-PKFVKTTASDS---SLFDHLINIWEF 190
K P + E L +GF+ E++V V+ P ++ ++S LF+ L W
Sbjct: 79 KRRPGDNMPTEAGLRVGFQQYDETFVCRVDCTTLPGNQRSVVAESLAHHLFETLHTQWLL 138
Query: 191 NPGPS-PGTCNLYFLVDFKFHSPLYRQV 217
+P P+ P + ++ FKF S LY V
Sbjct: 139 SPHPTRPDASVVELILRFKFKSQLYNSV 166
>sp|Q8FEY4|PAST_ECOL6 Persistence and stress-resistance toxin PasT OS=Escherichia coli
O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=pasT PE=1
SV=1
Length = 158
Score = 50.1 bits (118), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 53/106 (50%), Gaps = 3/106 (2%)
Query: 108 YSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNR 167
YS EQ++ +V V Y F+P C S IL+ P G A +++ + +++ + +L
Sbjct: 25 YSAEQMYQLVNDVQSYPQFLPGCTGSRILESTP-GQMTAAVDVSKAGISKTFTTRNQLTS 83
Query: 168 PKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPL 213
+ + + D F LI W+F P S C + F +DF+F + L
Sbjct: 84 NQSILMSLVDGP-FKKLIGGWKFTP-LSQDACRIEFHLDFEFTNKL 127
>sp|P0AGL6|RATA_SHIFL Ribosome association toxin RatA OS=Shigella flexneri GN=ratA PE=3
SV=1
Length = 158
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 108 YSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNR 167
YS EQ++ +V V Y F+P C S IL+ P G A +++ + +++ + +L
Sbjct: 25 YSAEQMYQLVNDVQSYPQFLPGCTGSRILESTP-GQMTAAVDVSKAGISKTFTTRNQLTS 83
Query: 168 PKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPL 213
+ + D F LI W+F P S C + F +DF+F + L
Sbjct: 84 NQSILMNLVDGP-FKKLIGGWKFTP-LSQEACRIEFHLDFEFTNKL 127
>sp|P0AGL5|RATA_ECOLI Ribosome association toxin RatA OS=Escherichia coli (strain K12)
GN=ratA PE=1 SV=1
Length = 158
Score = 49.3 bits (116), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 31/106 (29%), Positives = 52/106 (49%), Gaps = 3/106 (2%)
Query: 108 YSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNR 167
YS EQ++ +V V Y F+P C S IL+ P G A +++ + +++ + +L
Sbjct: 25 YSAEQMYQLVNDVQSYPQFLPGCTGSRILESTP-GQMTAAVDVSKAGISKTFTTRNQLTS 83
Query: 168 PKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPL 213
+ + D F LI W+F P S C + F +DF+F + L
Sbjct: 84 NQSILMNLVDGP-FKKLIGGWKFTP-LSQEACRIEFHLDFEFTNKL 127
>sp|O68560|RATA_PSEAE Ribosome association toxin RatA OS=Pseudomonas aeruginosa (strain
ATCC 15692 / PAO1 / 1C / PRS 101 / LMG 12228) GN=ratA
PE=3 SV=1
Length = 144
Score = 41.6 bits (96), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/114 (23%), Positives = 49/114 (42%), Gaps = 3/114 (2%)
Query: 105 VLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVE 164
+L Y LFD+V V Y F+PWC S++L+ + + AEL + L + + +
Sbjct: 10 LLPYPARALFDLVNDVKRYPEFLPWCSASQVLEES-ESLMRAELTVAKGSLSQRFTTRNV 68
Query: 165 LNRPKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVM 218
L ++ + F L +W+F C + + F + PL + +
Sbjct: 69 LVPGASIEMNLENGP-FTELHGVWQFK-ALGEKACKITLDLTFDYAGPLVKATL 120
>sp|Q8BX02|KANK2_MOUSE KN motif and ankyrin repeat domain-containing protein 2 OS=Mus
musculus GN=Kank2 PE=1 SV=1
Length = 843
Score = 32.3 bits (72), Expect = 2.7, Method: Composition-based stats.
Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 13/106 (12%)
Query: 120 VDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYV-------SHVELNRPKFVK 172
+DL + C E NP+ + EL++ + +++ ++ +H EL R V
Sbjct: 580 MDLSPDLISACLALEKYLENPNALTERELKVAYTTVLQEWLRLACRSDAHPELVRRHLVT 639
Query: 173 TTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVM 218
A + L D+++NI + N G L++ V + P+ RQ++
Sbjct: 640 FRAMSARLLDYVVNIADSN-----GNTALHYSVSHA-NFPVVRQLL 679
>sp|P0C6Q0|RATA_VIBCH Ribosome association toxin RatA OS=Vibrio cholerae serotype O1
(strain ATCC 39315 / El Tor Inaba N16961) GN=ratA PE=3
SV=1
Length = 144
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 105 VLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVE 164
++ +S EQ+F +V V Y F+P C S +L+ + + A +++ + +++ + +
Sbjct: 9 LVSFSAEQMFHLVNDVARYPEFLPGCSGSCVLEQS-EAHMVASVDVSKAGISKTFTTSNQ 67
Query: 165 LNRPKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPL 213
L + + D F L W F P C + ++F+F S +
Sbjct: 68 LTPGVSIAMSLVDGP-FKTLRGGWFFTP-LDEAACKVELRLEFEFSSKM 114
>sp|A5F376|RATA_VIBC3 Ribosome association toxin RatA OS=Vibrio cholerae serotype O1
(strain ATCC 39541 / Ogawa 395 / O395) GN=ratA PE=3 SV=2
Length = 144
Score = 32.0 bits (71), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 24/109 (22%), Positives = 50/109 (45%), Gaps = 3/109 (2%)
Query: 105 VLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVE 164
++ +S EQ+F +V V Y F+P C S +L+ + + A +++ + +++ + +
Sbjct: 9 LVSFSAEQMFHLVNDVARYPEFLPGCSGSCVLEQS-EAHMVASVDVSKAGISKTFTTSNQ 67
Query: 165 LNRPKFVKTTASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPL 213
L + + D F L W F P C + ++F+F S +
Sbjct: 68 LTPGVSIAMSLVDGP-FKTLRGGWFFTP-LDEAACKVELRLEFEFSSKM 114
>sp|Q4R510|FXRD1_MACFA FAD-dependent oxidoreductase domain-containing protein 1 OS=Macaca
fascicularis GN=FOXRED1 PE=2 SV=1
Length = 486
Score = 32.0 bits (71), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 36/83 (43%), Gaps = 9/83 (10%)
Query: 132 RSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKF--VKTTASDSSLFDHLINIWE 189
RS + PD A LE+ F E H+ L P F +K + + +D+ N ++
Sbjct: 363 RSPAEEEEPD---PANLEVDHDFFQEKVWPHLALRVPAFETLKVQTAWAGYYDY--NTFD 417
Query: 190 FNP--GPSPGTCNLYFLVDFKFH 210
N GP P N+YF F H
Sbjct: 418 QNGVVGPHPLVVNMYFATGFSGH 440
>sp|Q80U93|NU214_MOUSE Nuclear pore complex protein Nup214 OS=Mus musculus GN=Nup214 PE=1
SV=2
Length = 2085
Score = 31.6 bits (70), Expect = 5.3, Method: Composition-based stats.
Identities = 16/48 (33%), Positives = 25/48 (52%)
Query: 112 QLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESY 159
QL D + + LY+ PW S + + SFD++LE K +ES+
Sbjct: 871 QLVDSLQQLRLYNHTAPWSLPSALSTQSNSHSFDSDLECLLKTTIESH 918
>sp|Q55CE0|MKCF_DICDI Probable serine/threonine-protein kinase mkcF OS=Dictyostelium
discoideum GN=mkcF PE=3 SV=1
Length = 677
Score = 30.8 bits (68), Expect = 7.3, Method: Compositional matrix adjust.
Identities = 24/87 (27%), Positives = 47/87 (54%), Gaps = 10/87 (11%)
Query: 75 NGNVLQRRRFLG-VGDGEEGDVLSKVYEERRV----LGYS-PEQLFDVVAAVDLYHGFVP 128
+ ++ +R +F VG G+ G V +Y+++RV + YS P++ +V+ + GF+
Sbjct: 394 SSDIKKRIKFTHMVGRGQYGKVYDALYDKKRVCVKVVNYSTPKEQHNVLQEI----GFLT 449
Query: 129 WCQRSEILKHNPDGSFDAELEIGFKFL 155
C ILK+N + ++L I +F+
Sbjct: 450 QCDHPNILKYNCSVLYGSDLFIVSEFI 476
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.323 0.139 0.426
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 87,354,478
Number of Sequences: 539616
Number of extensions: 3557126
Number of successful extensions: 8284
Number of sequences better than 100.0: 27
Number of HSP's better than 100.0 without gapping: 19
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 8246
Number of HSP's gapped (non-prelim): 27
length of query: 231
length of database: 191,569,459
effective HSP length: 114
effective length of query: 117
effective length of database: 130,053,235
effective search space: 15216228495
effective search space used: 15216228495
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 59 (27.3 bits)