Query 026904
Match_columns 231
No_of_seqs 150 out of 838
Neff 5.6
Searched_HMMs 46136
Date Fri Mar 29 14:20:45 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026904.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026904hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG2867 Oligoketide cyclase/li 100.0 7.6E-39 1.7E-43 262.5 12.3 132 97-231 1-135 (146)
2 KOG3177 Oligoketide cyclase/li 100.0 1.1E-36 2.4E-41 261.7 7.9 186 36-231 16-204 (227)
3 PRK10724 hypothetical protein; 100.0 9.1E-35 2E-39 242.2 17.1 133 96-231 13-147 (158)
4 cd07813 COQ10p_like Coenzyme Q 99.9 8.5E-27 1.9E-31 185.4 15.7 129 100-231 1-131 (138)
5 cd08860 TcmN_ARO-CYC_like N-te 99.9 8.2E-23 1.8E-27 167.6 16.3 121 99-222 2-127 (146)
6 PF03364 Polyketide_cyc: Polyk 99.9 1.2E-22 2.7E-27 159.1 12.0 124 106-231 1-129 (130)
7 cd07819 SRPBCC_2 Ligand-bindin 99.8 1.9E-19 4E-24 141.0 16.5 123 98-222 2-125 (140)
8 cd08861 OtcD1_ARO-CYC_like N-t 99.8 3.2E-19 7E-24 141.4 16.2 129 100-230 1-135 (142)
9 cd08866 SRPBCC_11 Ligand-bindi 99.8 2.6E-19 5.5E-24 142.3 15.4 128 100-230 1-137 (144)
10 cd07817 SRPBCC_8 Ligand-bindin 99.7 3.8E-16 8.2E-21 122.4 13.1 122 100-229 2-127 (139)
11 cd05018 CoxG Carbon monoxide d 99.7 9.6E-16 2.1E-20 120.5 13.8 126 99-230 2-134 (144)
12 cd07824 SRPBCC_6 Ligand-bindin 99.7 2.3E-15 5.1E-20 121.4 14.5 126 99-229 2-136 (146)
13 cd07818 SRPBCC_1 Ligand-bindin 99.6 1.7E-14 3.6E-19 115.5 14.6 121 99-222 3-129 (150)
14 cd08876 START_1 Uncharacterize 99.6 5.6E-14 1.2E-18 118.2 14.2 134 96-230 39-189 (195)
15 cd07820 SRPBCC_3 Ligand-bindin 99.6 1.6E-13 3.5E-18 109.5 14.6 120 100-222 1-124 (137)
16 cd08865 SRPBCC_10 Ligand-bindi 99.5 3.6E-13 7.9E-18 104.3 14.6 108 100-211 1-110 (140)
17 cd07821 PYR_PYL_RCAR_like Pyra 99.5 4.7E-13 1E-17 104.0 14.9 118 99-221 2-123 (140)
18 PF10604 Polyketide_cyc2: Poly 99.4 1.3E-11 2.9E-16 95.9 15.2 106 97-209 1-108 (139)
19 cd07823 SRPBCC_5 Ligand-bindin 99.4 7.8E-12 1.7E-16 100.8 13.1 126 101-231 2-136 (146)
20 cd07812 SRPBCC START/RHO_alpha 99.3 1.1E-10 2.3E-15 87.5 13.9 112 101-214 2-115 (141)
21 cd08862 SRPBCC_Smu440-like Lig 99.2 5.6E-10 1.2E-14 87.1 15.8 104 99-208 2-106 (138)
22 cd07822 SRPBCC_4 Ligand-bindin 99.2 1.5E-09 3.3E-14 84.3 15.9 107 99-208 1-110 (141)
23 cd07814 SRPBCC_CalC_Aha1-like 99.1 5.7E-09 1.2E-13 81.3 13.2 109 100-212 2-113 (139)
24 COG5637 Predicted integral mem 99.0 3.2E-09 6.9E-14 90.8 11.3 120 96-222 68-189 (217)
25 cd07825 SRPBCC_7 Ligand-bindin 99.0 2.3E-08 5E-13 79.2 13.3 109 99-210 1-115 (144)
26 cd08874 START_STARD9-like C-te 98.9 5.5E-08 1.2E-12 84.6 13.7 124 98-222 45-189 (205)
27 cd08877 START_2 Uncharacterize 98.8 3.5E-08 7.6E-13 85.1 11.3 133 96-229 44-206 (215)
28 PF06240 COXG: Carbon monoxide 98.8 1.6E-07 3.6E-12 75.9 13.7 123 103-231 2-131 (140)
29 cd08905 START_STARD1-like Chol 98.8 8.4E-08 1.8E-12 83.0 11.5 130 98-228 49-196 (209)
30 cd08906 START_STARD3-like Chol 98.8 1.6E-07 3.5E-12 81.5 13.2 130 98-228 49-196 (209)
31 cd07816 Bet_v1-like Ligand-bin 98.7 1.1E-06 2.5E-11 71.8 16.8 112 99-212 2-122 (148)
32 cd08913 START_STARD14-like Lip 98.6 8.9E-07 1.9E-11 78.9 13.5 124 96-222 79-221 (240)
33 cd08873 START_STARD14_15-like 98.6 1.8E-06 3.9E-11 76.8 14.0 116 96-212 75-207 (235)
34 cd08903 START_STARD5-like Lipi 98.5 2E-06 4.4E-11 74.4 13.4 127 99-227 47-194 (208)
35 cd08911 START_STARD7-like Lipi 98.4 8.8E-06 1.9E-10 70.3 14.9 127 96-222 43-189 (207)
36 cd08870 START_STARD2_7-like Li 98.4 8.4E-06 1.8E-10 70.3 14.7 127 96-222 48-191 (209)
37 cd00177 START Lipid-binding ST 98.4 2.1E-05 4.4E-10 64.5 15.6 126 96-222 37-177 (193)
38 cd08908 START_STARD12-like C-t 98.4 6.1E-06 1.3E-10 71.9 12.8 125 95-222 49-187 (204)
39 cd08869 START_RhoGAP C-termina 98.4 9.5E-06 2.1E-10 69.6 13.8 124 96-222 42-180 (197)
40 cd08868 START_STARD1_3_like Ch 98.4 7.7E-06 1.7E-10 70.2 12.8 125 98-222 48-190 (208)
41 cd08871 START_STARD10-like Lip 98.4 1.8E-05 3.9E-10 68.6 15.0 126 96-222 45-185 (222)
42 cd08914 START_STARD15-like Lip 98.3 5.8E-06 1.2E-10 73.6 11.1 120 96-219 76-214 (236)
43 COG3427 Carbon monoxide dehydr 98.3 2.8E-05 6.1E-10 64.6 14.1 125 99-230 2-134 (146)
44 smart00234 START in StAR and p 98.2 5.7E-05 1.2E-09 63.8 14.9 126 96-222 43-185 (206)
45 cd08899 SRPBCC_CalC_Aha1-like_ 98.2 2.9E-05 6.3E-10 63.6 11.1 103 98-211 11-114 (157)
46 cd08867 START_STARD4_5_6-like 98.2 0.0001 2.2E-09 63.1 14.9 125 98-222 46-190 (206)
47 cd08898 SRPBCC_CalC_Aha1-like_ 98.1 7.3E-05 1.6E-09 58.8 12.2 100 99-206 2-111 (145)
48 cd08893 SRPBCC_CalC_Aha1-like_ 98.1 7.8E-05 1.7E-09 57.9 12.0 106 100-212 2-113 (136)
49 cd08910 START_STARD2-like Lipi 98.1 4.7E-05 1E-09 65.9 11.5 124 96-222 47-189 (207)
50 cd08872 START_STARD11-like Cer 98.0 0.00016 3.4E-09 64.1 12.7 124 97-222 51-209 (235)
51 cd08894 SRPBCC_CalC_Aha1-like_ 97.9 0.00088 1.9E-08 53.4 14.5 102 100-207 2-108 (139)
52 cd08896 SRPBCC_CalC_Aha1-like_ 97.8 0.0012 2.5E-08 53.1 14.3 104 100-207 2-115 (146)
53 cd08895 SRPBCC_CalC_Aha1-like_ 97.8 0.0014 3E-08 52.7 14.5 106 100-207 2-119 (146)
54 cd08900 SRPBCC_CalC_Aha1-like_ 97.6 0.003 6.6E-08 50.4 14.3 105 100-208 2-115 (143)
55 PF01852 START: START domain; 97.6 0.01 2.2E-07 49.8 17.3 124 96-222 44-185 (206)
56 PF00407 Bet_v_1: Pathogenesis 97.6 0.0058 1.3E-07 50.6 15.1 133 98-231 4-147 (151)
57 cd08897 SRPBCC_CalC_Aha1-like_ 97.5 0.0025 5.5E-08 50.4 12.4 98 100-205 2-105 (133)
58 cd08909 START_STARD13-like C-t 97.5 0.0028 6.1E-08 55.4 13.2 125 95-222 49-188 (205)
59 cd07826 SRPBCC_CalC_Aha1-like_ 97.4 0.0091 2E-07 47.9 14.0 107 100-212 2-114 (142)
60 cd08904 START_STARD6-like Lipi 97.4 0.008 1.7E-07 52.4 14.1 131 98-229 46-194 (204)
61 cd08901 SRPBCC_CalC_Aha1-like_ 97.3 0.0083 1.8E-07 47.7 12.5 98 100-206 2-99 (136)
62 cd08891 SRPBCC_CalC Ligand-bin 97.3 0.011 2.4E-07 47.5 13.3 102 100-207 2-115 (149)
63 PF08327 AHSA1: Activator of H 97.3 0.0066 1.4E-07 46.3 11.4 93 107-206 1-96 (124)
64 cd08892 SRPBCC_Aha1 Putative h 96.5 0.1 2.2E-06 41.0 12.4 97 100-208 2-100 (126)
65 PF10698 DUF2505: Protein of u 95.7 0.37 8E-06 39.8 12.7 119 100-222 1-140 (159)
66 cd08902 START_STARD4-like Lipi 95.7 0.4 8.7E-06 42.0 13.2 131 98-229 47-192 (202)
67 COG3832 Uncharacterized conser 95.4 0.45 9.7E-06 38.9 12.2 96 96-194 6-105 (149)
68 PTZ00220 Activator of HSP-90 A 94.9 0.32 7E-06 38.9 9.6 92 106-207 1-95 (132)
69 COG4276 Uncharacterized conser 92.3 5.8 0.00012 33.1 12.6 108 97-212 1-120 (153)
70 cd08863 SRPBCC_DUF1857 DUF1857 91.5 7.2 0.00016 32.3 12.5 65 108-177 17-82 (141)
71 PF08982 DUF1857: Domain of un 90.6 4.4 9.6E-05 33.7 10.6 66 107-177 17-83 (149)
72 PLN00188 enhanced disease resi 88.2 15 0.00032 38.0 14.1 115 97-211 226-362 (719)
73 PF11687 DUF3284: Domain of un 88.2 12 0.00025 29.8 13.3 104 102-221 3-117 (120)
74 cd08875 START_ArGLABRA2_like C 88.1 12 0.00027 33.4 12.1 114 97-211 59-198 (229)
75 KOG2761 START domain-containin 87.4 21 0.00045 31.8 13.4 126 97-222 52-197 (219)
76 cd08864 SRPBCC_DUF3074 DUF3074 83.3 14 0.00031 32.2 9.9 98 125-222 67-191 (208)
77 cd08907 START_STARD8-like C-te 70.4 76 0.0017 28.0 12.7 123 95-222 49-187 (205)
78 PF02974 Inh: Protease inhibit 25.1 86 0.0019 23.9 3.1 25 181-207 9-33 (99)
79 PF02713 DUF220: Domain of unk 24.8 32 0.00069 25.6 0.6 24 171-194 20-43 (74)
80 PLN00095 chlorophyllide a oxyg 21.4 7.6E+02 0.017 24.0 9.3 108 103-211 222-341 (394)
No 1
>COG2867 Oligoketide cyclase/lipid transport protein [Lipid metabolism]
Probab=100.00 E-value=7.6e-39 Score=262.45 Aligned_cols=132 Identities=30% Similarity=0.572 Sum_probs=125.8
Q ss_pred ccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEecCCC-eEEEEe
Q 026904 97 SKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPK-FVKTTA 175 (231)
Q Consensus 97 m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~d~p~-rI~~~~ 175 (231)
|+.++.++++||+|+|||+||+||++||+|+|||.+++|+++++. .+.|+++|+++++.|+|+|+|+++|+. .|.+.+
T Consensus 1 m~~~~~s~lv~y~a~~mF~LV~dV~~YP~FlP~C~~s~v~~~~~~-~l~A~l~V~~k~i~e~F~Trv~~~~~~~~I~~~l 79 (146)
T COG2867 1 MPQIERTALVPYSASQMFDLVNDVESYPEFLPWCSASRVLERNER-ELIAELDVGFKGIRETFTTRVTLKPTARSIDMKL 79 (146)
T ss_pred CCeeEeeeeccCCHHHHHHHHHHHHhCchhccccccceEeccCcc-eeEEEEEEEhhheeeeeeeeeeecCchhhhhhhh
Confidence 789999999999999999999999999999999999999999875 589999999999999999999999988 788888
Q ss_pred cccccccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH--HHhhhhhcC
Q 026904 176 SDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL--VFHIMLCQY 231 (231)
Q Consensus 176 ~esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~--v~~~Mi~~~ 231 (231)
.+ |||+.|.|.|+|.|+. +++|+|+|.|||||+|+|++.+++++| ++++||+||
T Consensus 80 ~~-GPFk~L~~~W~F~pl~-~~~ckV~f~ldfeF~s~ll~~~~g~~f~~~a~~mv~aF 135 (146)
T COG2867 80 ID-GPFKYLKGGWQFTPLS-EDACKVEFFLDFEFKSRLLGALIGPVFKRLASKMVEAF 135 (146)
T ss_pred hc-CChhhhcCceEEEECC-CCceEEEEEEEeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 9999999999999984 689999999999999999999999999 999999986
No 2
>KOG3177 consensus Oligoketide cyclase/lipid transport protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-36 Score=261.75 Aligned_cols=186 Identities=38% Similarity=0.695 Sum_probs=162.1
Q ss_pred cccceeeeccccccccccccccccccccccccccccccCCCceeeceeeecCCCCCCCcccccEEEEEEEEcCCHHHHHH
Q 026904 36 MLNQFRRLCGITGIETSSVHKLIGAHQNISSSLANFCQNNGNVLQRRRFLGVGDGEEGDVLSKVYEERRVLGYSPEQLFD 115 (231)
Q Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~f~~~~~~~~~~~~m~~~~~s~~I~appeqVyd 115 (231)
+-+++|.+..+.|...+.+.+++ ...++...+.+++ ++|+|+|+.+.. .++.+.|+++++++|+|++||+
T Consensus 16 ~t~~~~~~~~~~g~r~l~s~~~~-~~~~~~~~~~~~p-------~~R~f~~~~~~~--~~r~k~Y~errligysp~~my~ 85 (227)
T KOG3177|consen 16 VTIRIRLAPLSRGSRTLISCRLL-MQRPAQVSTPGLP-------LRRSFFGFSAPF--TNREKAYSERRLIGYSPSEMYS 85 (227)
T ss_pred hhhhhhhhhcccchhhhhhhhhh-ccCcccccCCCcc-------hhhheeeecCCc--chHHHHHHHHhhhCCCHHHHHH
Confidence 35566666556566666666666 6666666553333 799999998643 2577899999999999999999
Q ss_pred HHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEecCCCeEEEEecccccccceeeEEEEeeCC-
Q 026904 116 VVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASDSSLFDHLINIWEFNPGP- 194 (231)
Q Consensus 116 LVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~d~p~rI~~~~~esg~Fk~L~G~W~f~p~~- 194 (231)
+|+||+.|.+|+|||++|.|++++|++.+.|+|+|||+++.|+|+|+|++++|+.+.....+.++|++|.+.|+|.|.+
T Consensus 86 vVS~V~~Y~~FVPwC~kS~V~~~~P~~~~kA~LeVGFk~l~E~y~S~Vt~~~p~l~kt~~~d~rLF~~L~t~Wsf~pg~~ 165 (227)
T KOG3177|consen 86 VVSNVSEYHEFVPWCKKSDVTSRRPSGPLKADLEVGFKPLDERYTSNVTCVKPHLTKTVCADGRLFNHLITIWSFKPGPN 165 (227)
T ss_pred HHHhHHHhhccccceeccceeecCCCCCceeeEEecCcccchhheeeeEEecccceEEeeccccHHHhhhheeeeccCCC
Confidence 9999999999999999999999998788999999999999999999999999998888888999999999999999985
Q ss_pred CCCceEEEEEEEEEeCChHHHHHHHHHH--HHhhhhhcC
Q 026904 195 SPGTCNLYFLVDFKFHSPLYRQVMVLHL--VFHIMLCQY 231 (231)
Q Consensus 195 ~~~~T~V~f~ldFef~spL~~~la~~~~--v~~~Mi~~~ 231 (231)
-++.|.|+|+++|||+++||++++..|| |++.|+.||
T Consensus 166 ~p~tc~ldf~v~FeF~S~lhs~va~~Ffd~V~~~~v~AF 204 (227)
T KOG3177|consen 166 IPRTCTLDFSVSFEFKSLLHSQVATIFFDEVVKQMVNAF 204 (227)
T ss_pred CCCeEEEEEEEEEEehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 2579999999999999999999999999 999999986
No 3
>PRK10724 hypothetical protein; Provisional
Probab=100.00 E-value=9.1e-35 Score=242.20 Aligned_cols=133 Identities=22% Similarity=0.444 Sum_probs=126.6
Q ss_pred cccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEecCCCeEEEEe
Q 026904 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTA 175 (231)
Q Consensus 96 ~m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~d~p~rI~~~~ 175 (231)
.|+.++.+++|+||+++||++|+|||+||+|+|||++++|++++++ ...|+++|+++|+.++|++++++++|++|.+.+
T Consensus 13 ~M~~i~~~~~v~~s~~~v~~lv~Dve~yp~flp~~~~s~vl~~~~~-~~~a~l~v~~~g~~~~f~srv~~~~~~~I~~~~ 91 (158)
T PRK10724 13 VMPQISRTALVPYSAEQMYQLVNDVQSYPQFLPGCTGSRVLESTPG-QMTAAVDVSKAGISKTFTTRNQLTSNQSILMQL 91 (158)
T ss_pred cCCeEEEEEEecCCHHHHHHHHHHHHHHHHhCcccCeEEEEEecCC-EEEEEEEEeeCCccEEEEEEEEecCCCEEEEEe
Confidence 6999999999999999999999999999999999999999999876 469999999999999999999999999999988
Q ss_pred cccccccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH--HHhhhhhcC
Q 026904 176 SDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL--VFHIMLCQY 231 (231)
Q Consensus 176 ~esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~--v~~~Mi~~~ 231 (231)
.+ |||++|+|.|+|+|.+ +++|+|+|+++|+|++|+++.++++++ +++.||+||
T Consensus 92 ~~-GpF~~l~g~W~f~p~~-~~~t~V~~~l~fef~s~l~~~~~~~~~~~~~~~mv~AF 147 (158)
T PRK10724 92 VD-GPFKKLIGGWKFTPLS-QEACRIEFHLDFEFTNKLIELAFGRVFKELASNMVQAF 147 (158)
T ss_pred cC-CChhhccceEEEEECC-CCCEEEEEEEEEEEchHHHHHHHHHHHHHHHHHHHHHH
Confidence 76 8999999999999985 578999999999999999999999999 999999886
No 4
>cd07813 COQ10p_like Coenzyme Q-binding protein COQ10p and similar proteins. Coenzyme Q-binding protein COQ10p and similar proteins. COQ10p is a hydrophobic protein located in the inner membrane of mitochondria that binds coenzyme Q (CoQ), also called ubiquinone, which is an essential electron carrier of the respiratory chain. Deletion of the gene encoding COQ10p (COQ10 or YOL008W) in Saccharomyces cerevisiae results in respiratory defect because of the inability to oxidize NADH and succinate. COQ10p may function in the delivery of CoQ (Q6 in budding yeast) to its proper location for electron transport. The human homolog, called Q-binding protein COQ10 homolog A (COQ10A), is able to fully complement for the absence of COQ10p in fission yeast. Human COQ10A also has a splice variant COQ10B. COQ10p belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and the
Probab=99.95 E-value=8.5e-27 Score=185.39 Aligned_cols=129 Identities=36% Similarity=0.685 Sum_probs=120.0
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEecCCCeEEEEecccc
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASDSS 179 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~d~p~rI~~~~~esg 179 (231)
++.+..|++|+++||++++|+++||+|+|+|++++|+++.++ ...+++++++.++..+|+++++++++++|.+.+.+ |
T Consensus 1 ~~~s~~i~ap~~~v~~~i~D~~~~~~~~p~~~~~~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-g 78 (138)
T cd07813 1 YSKSRLVPYSAEQMFDLVADVERYPEFLPWCTASRVLERDED-ELEAELTVGFGGIRESFTSRVTLVPPESIEAELVD-G 78 (138)
T ss_pred CeEEEEcCCCHHHHHHHHHHHHhhhhhcCCccccEEEEcCCC-EEEEEEEEeeccccEEEEEEEEecCCCEEEEEecC-C
Confidence 467899999999999999999999999999999999999874 57889999999999999999999998899999866 8
Q ss_pred cccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH--HHhhhhhcC
Q 026904 180 LFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL--VFHIMLCQY 231 (231)
Q Consensus 180 ~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~--v~~~Mi~~~ 231 (231)
+|+.++|.|+|+|.+ +++|+|+|.++|++++|+++.|+++++ +...||++|
T Consensus 79 ~~~~~~g~w~~~p~~-~~~T~v~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~f 131 (138)
T cd07813 79 PFKHLEGEWRFKPLG-ENACKVEFDLEFEFKSRLLEALAGLVFDEVAKKMVDAF 131 (138)
T ss_pred ChhhceeEEEEEECC-CCCEEEEEEEEEEECCHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999995 588999999999999999999999999 999999875
No 5
>cd08860 TcmN_ARO-CYC_like N-terminal aromatase/cyclase domain of the multifunctional protein tetracenomycin (TcmN) and related domains. This family includes the N-terminal aromatase/cyclase (ARO/CYC) domain of Streptomyces glaucescens TcmN, and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, monodomain and didomain. Monodomain aromatase/cyclases have a single ARO/CYC domain. For some, such as TcmN, this single domain is linked to a second domain of unrelated function. TcmN is a multifunctional cyclase-dehydratase-O-methyl transferase. Its N-terminal ARO/CYC domain participates in polyketide binding and catalysis; it promotes C9-C14 first-ring (and C7-C16 second-ring) cyclizations.
Probab=99.90 E-value=8.2e-23 Score=167.61 Aligned_cols=121 Identities=17% Similarity=0.276 Sum_probs=103.6
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcc--cCeEEEEEEEEEecCCC-eEEEEe
Q 026904 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGF--KFLVESYVSHVELNRPK-FVKTTA 175 (231)
Q Consensus 99 ~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf--~g~~e~ytSrv~~d~p~-rI~~~~ 175 (231)
+++++++|+|||++||++|+||++||+|+|+|++++|+++++++ ..+++.+.+ +|+..+|+|+++.+++. +|.+..
T Consensus 2 ~~~~si~i~a~~~~v~~lvaDv~~~P~~~~~~~~~~~l~~~~~~-~~~r~~i~~~~~g~~~~w~s~~~~~~~~~~i~~~~ 80 (146)
T cd08860 2 RTDNSIVIDAPLDLVWDMTNDIATWPDLFSEYAEAEVLEEDGDT-VRFRLTMHPDANGTVWSWVSERTLDPVNRTVRARR 80 (146)
T ss_pred cceeEEEEcCCHHHHHHHHHhhhhhhhhccceEEEEEEEecCCe-EEEEEEEEeccCCEEEEEEEEEEecCCCcEEEEEE
Confidence 57899999999999999999999999999999999999997754 457776666 89999999999998877 588754
Q ss_pred cccccccceeeEEEEeeCCCCCceEEEEEEEEEeCC--hHHHHHHHHHH
Q 026904 176 SDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHS--PLYRQVMVLHL 222 (231)
Q Consensus 176 ~esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~s--pL~~~la~~~~ 222 (231)
...+||+.+.|.|+|+|.+ ++|+|+|.++|++++ |+.+.++....
T Consensus 81 ~~~~p~~~m~~~W~f~~~~--~gT~V~~~~~~~~~~~~~~~~~~~~~~~ 127 (146)
T cd08860 81 VETGPFAYMNIRWEYTEVP--EGTRMRWVQDFEMKPGAPVDDAAMTDRL 127 (146)
T ss_pred ecCCCcceeeeeEEEEECC--CCEEEEEEEEEEECCCCccchHHHHHHH
Confidence 4458999999999999984 569999999999987 87776655544
No 6
>PF03364 Polyketide_cyc: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR005031 Members of this family of enzymes from Streptomyces spp. are involved in polyketide (linear poly-beta-ketones) synthesis.; PDB: 1T17_A 3GGN_B 2KCZ_A 2D4R_B 2REZ_A 2RES_A 3TVQ_A 2RER_A 2KF2_A 3TL1_A ....
Probab=99.89 E-value=1.2e-22 Score=159.06 Aligned_cols=124 Identities=19% Similarity=0.327 Sum_probs=111.1
Q ss_pred EcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEecCCCeEEEEeccccccccee
Q 026904 106 LGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASDSSLFDHLI 185 (231)
Q Consensus 106 I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~d~p~rI~~~~~esg~Fk~L~ 185 (231)
|+||+++||++++|+++||+|+|+|++++|++++++ .+.+++++.+.++...|+++++++++..|.+.+.. |+|+.++
T Consensus 1 V~ap~~~V~~~i~D~e~~~~~~p~~~~v~vl~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~ 78 (130)
T PF03364_consen 1 VNAPPEEVWSVITDYENYPRFFPPVKEVRVLERDGD-GMRARWEVKFGGIKRSWTSRVTEDPPERIRFEQIS-GPFKSFE 78 (130)
T ss_dssp ESS-HHHHHHHHTTGGGHHHHCTTEEEEEEEEEECC-EEEEEEEECTTTTCEEEEEEEEEECTTTEEEESSE-TTEEEEE
T ss_pred CCCCHHHHHHHHHHHHHHHHhCCCCceEEEEEeCCC-eEEEEEEEecCCEEEEEEEEEEEEEeeeeeeeecC-CCchhcE
Confidence 689999999999999999999999999999999876 67889999999999999999999999888888844 9999999
Q ss_pred eEEEEeeCCC---CCceEEEEEEEEEeCChHHHHHHHHHH--HHhhhhhcC
Q 026904 186 NIWEFNPGPS---PGTCNLYFLVDFKFHSPLYRQVMVLHL--VFHIMLCQY 231 (231)
Q Consensus 186 G~W~f~p~~~---~~~T~V~f~ldFef~spL~~~la~~~~--v~~~Mi~~~ 231 (231)
|.|+|.+.++ +..|+|.++++++++.|+++.++++++ ....|+.|+
T Consensus 79 g~W~~~~~~~~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 129 (130)
T PF03364_consen 79 GSWRFEPLGGNEGGTRTRVTYDYEVDPPGPLPGFLARQFFRRDLRQMLEAF 129 (130)
T ss_dssp EEEEEEEETTECCEEEEEEEEEEEEETSSSSHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEECCCCcCCCEEEEEEEEEEecCcHhHHHHHHHHHHHHHHHHHHhh
Confidence 9999999852 235799999999999999999999999 777777663
No 7
>cd07819 SRPBCC_2 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.84 E-value=1.9e-19 Score=141.04 Aligned_cols=123 Identities=15% Similarity=0.167 Sum_probs=108.7
Q ss_pred cEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCe-EEEEEEEcccCeEEEEEEEEEecCCCeEEEEec
Q 026904 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGS-FDAELEIGFKFLVESYVSHVELNRPKFVKTTAS 176 (231)
Q Consensus 98 ~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~-~~Ael~Vgf~g~~e~ytSrv~~d~p~rI~~~~~ 176 (231)
..+++++.|++||++||++|+|+++||+|+|+|.++++++.++++. ..+++.++..++.+.|+++++++++.+|.++..
T Consensus 2 ~~v~~s~~i~ap~e~V~~~l~D~~~~~~w~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 81 (140)
T cd07819 2 IKVSREFEIEAPPAAVMDVLADVEAYPEWSPKVKSVEVLLRDNDGRPEMVRIGVGAYGIKDTYALEYTWDGAGSVSWTLV 81 (140)
T ss_pred ceEEEEEEEeCCHHHHHHHHhChhhhhhhCcceEEEEEeccCCCCCEEEEEEEEeeeeEEEEEEEEEEEcCCCcEEEEEe
Confidence 3689999999999999999999999999999999999987654332 456778888889999999999987778999987
Q ss_pred ccccccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 177 DSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 177 esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
+++++..+.|.|+|+|.+ ++|+|+|.++++++.|+++.+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~--~~t~vt~~~~~~~~~~~~~~~~~~~~ 125 (140)
T cd07819 82 EGEGNRSQEGSYTLTPKG--DGTRVTFDLTVELTVPLPGFLKRKAE 125 (140)
T ss_pred cccceeEEEEEEEEEECC--CCEEEEEEEEEEecCCCCHHHHHHhh
Confidence 766688999999999984 58999999999999999999998776
No 8
>cd08861 OtcD1_ARO-CYC_like N-terminal and C-terminal aromatase/cyclase domains of Streptomyces rimosus OtcD1 and related domains. This family includes the N- and C- terminal aromatase/cyclase (ARO/CYC) domains of Streptomyces rimosus OtcD1 and related domains. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. ARO/CYC domains participate in the diversification of aromatic polyketides by promoting polyketide cyclization. They occur in two architectural forms, didomain and monodomain. Didomain aromatase/cyclases (ARO/CYCs), contain two ARO/CYC domains, and are associated with C7-C12 first ring cyclized polyketides. Streptomyces rimosus OtcD1 is a didomain ARO/CYC. The polyketide Oxytetracycline (OTC) is a broad spectrum antibiotic made by Streptomyces rimosus. The gene encoding OtcD1 is part of oxytetracycline (OTC) gene cluster. Disruption of this
Probab=99.83 E-value=3.2e-19 Score=141.36 Aligned_cols=129 Identities=16% Similarity=0.167 Sum_probs=103.1
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEecC-CCeEEEEecc-
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNR-PKFVKTTASD- 177 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~d~-p~rI~~~~~e- 177 (231)
++++++|++|+++||++++|+++||+|+|+ .++++++..+++.....+.++..+...+|++..++++ +++|.|...+
T Consensus 1 ~~~s~~i~ap~~~V~~~l~D~~~~p~~~p~-~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~~~~~ 79 (142)
T cd08861 1 VEHSVTVAAPAEDVYDLLADAERWPEFLPT-VHVERLELDGGVERLRMWATAFDGSVHTWTSRRVLDPEGRRIVFRQEEP 79 (142)
T ss_pred CeEEEEEcCCHHHHHHHHHhHHhhhccCCC-ceEEEEEEcCCEEEEEEEEEcCCCcEEEEEEEEEEcCCCCEEEEEEeeC
Confidence 367899999999999999999999999999 8888888765443333467777888888988888988 6689998753
Q ss_pred cccccceeeEEEEeeCCCCCceEEEEEEEEEeCChH--HHHHHHHHH--HHhhhhhc
Q 026904 178 SSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPL--YRQVMVLHL--VFHIMLCQ 230 (231)
Q Consensus 178 sg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL--~~~la~~~~--v~~~Mi~~ 230 (231)
.++|+.+.|.|+|+|.+ +++|+|+|.++|+++.|+ .+.++..+. ....|+++
T Consensus 80 ~~~~~~~~g~w~~~~~~-~~~t~Vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 135 (142)
T cd08861 80 PPPVASMSGEWRFEPLG-GGGTRVTLRHDFTLGIDSPEAVPWIRRALDRNSRAELAA 135 (142)
T ss_pred CCChhhheeEEEEEECC-CCcEEEEEEEEEEECCCCchhHHHHHHHHccccHHHHHH
Confidence 48999999999999984 478999999999999854 455555554 44455544
No 9
>cd08866 SRPBCC_11 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.83 E-value=2.6e-19 Score=142.28 Aligned_cols=128 Identities=18% Similarity=0.186 Sum_probs=99.1
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEE----EecC--CCeEEE
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHV----ELNR--PKFVKT 173 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv----~~d~--p~rI~~ 173 (231)
++.++.|++||++||++|.|+++||+|+|+|++++++++.+++ ...++....+.+...+...+ +..+ ++++.+
T Consensus 1 ~~~~~~i~a~~~~Vw~~l~D~~~~~~w~p~v~~~~~l~~~~~~-~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~i~~ 79 (144)
T cd08866 1 VVARVRVPAPPETVWAVLTDYDNLAEFIPNLAESRLLERNGNR-VVLEQTGKQGILFFKFEARVVLELREREEFPRELDF 79 (144)
T ss_pred CeEEEEECCCHHHHHHHHhChhhHHhhCcCceEEEEEEcCCCE-EEEEEeeeEEEEeeeeeEEEEEEEEEecCCCceEEE
Confidence 3578899999999999999999999999999999999886543 33444332222222233332 2222 568999
Q ss_pred EecccccccceeeEEEEeeCCCC-CceEEEEEEEEEeCChHHHHHHHHHH--HHhhhhhc
Q 026904 174 TASDSSLFDHLINIWEFNPGPSP-GTCNLYFLVDFKFHSPLYRQVMVLHL--VFHIMLCQ 230 (231)
Q Consensus 174 ~~~esg~Fk~L~G~W~f~p~~~~-~~T~V~f~ldFef~spL~~~la~~~~--v~~~Mi~~ 230 (231)
.+.+ |+|+++.|.|+|+|.+ + ++|+|+|.++++++.++++.+++.++ ....|+.+
T Consensus 80 ~~~~-g~~~~~~g~w~~~~~~-~~~~t~v~~~~~~~~~~~~p~~l~~~~~~~~~~~~l~~ 137 (144)
T cd08866 80 EMVE-GDFKRFEGSWRLEPLA-DGGGTLLTYEVEVKPDFFAPVFLVEFVLRQDLPTNLLA 137 (144)
T ss_pred EEcC-CchhceEEEEEEEECC-CCCeEEEEEEEEEEeCCCCCHHHHHHHHHHHHHHHHHH
Confidence 8865 8999999999999984 4 58999999999999999999999988 56666654
No 10
>cd07817 SRPBCC_8 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.70 E-value=3.8e-16 Score=122.35 Aligned_cols=122 Identities=10% Similarity=0.049 Sum_probs=99.3
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEccc-CeEEEEEEEEE-ecCCCeEEEEecc
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK-FLVESYVSHVE-LNRPKFVKTTASD 177 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~-g~~e~ytSrv~-~d~p~rI~~~~~e 177 (231)
++.++.|++|+++||++++|+++||+|.|+|.+++++... ..++.+... |....|+++++ ++++++|.+....
T Consensus 2 v~~~i~I~ap~e~V~~~~~D~~~~~~w~~~~~~~~~~~~~-----~~~~~~~~~~g~~~~~~~~v~~~~~~~~i~~~~~~ 76 (139)
T cd07817 2 VEKSITVNVPVEEVYDFWRDFENLPRFMSHVESVEQLDDT-----RSHWKAKGPAGLSVEWDAEITEQVPNERIAWRSVE 76 (139)
T ss_pred eeEEEEeCCCHHHHHHHHhChhhhHHHhhhhcEEEEcCCC-----ceEEEEecCCCCcEEEEEEEeccCCCCEEEEEECC
Confidence 6788999999999999999999999999999999988542 124455544 77788998875 4566689998755
Q ss_pred cccccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH--HHhhhhh
Q 026904 178 SSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL--VFHIMLC 229 (231)
Q Consensus 178 sg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~--v~~~Mi~ 229 (231)
|++ ...+.|+|++.+ +++|+|++.++|++.+++.+.++++++ .++.++.
T Consensus 77 -~~~-~~~~~~~f~~~~-~~~T~vt~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 127 (139)
T cd07817 77 -GAD-PNAGSVRFRPAP-GRGTRVTLTIEYEPPGGAEGAAVAGLLGGEPERQLR 127 (139)
T ss_pred -CCC-CcceEEEEEECC-CCCeEEEEEEEEECCcchhhhhHHHHhhhhHHHHHH
Confidence 777 789999999984 468999999999999999988888776 5555443
No 11
>cd05018 CoxG Carbon monoxide dehydrogenase subunit G (CoxG). CoxG has been shown, in Oligotropha carboxidovorans, to anchor the carbon monoxide (CO) dehydrogenase to the cytoplasmic membrane. The gene encoding CoxG is part of the Cox cluster (coxBCMSLDEFGHIK) located on a low-copy-number, circular, megaplasmid pHCG3. This cluster includes genes encoding subunits of CO dehydrogenase and several accessory components involved in the utilization of CO. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=99.68 E-value=9.6e-16 Score=120.49 Aligned_cols=126 Identities=15% Similarity=0.227 Sum_probs=96.9
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEe---cCCCeEEEEe
Q 026904 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVEL---NRPKFVKTTA 175 (231)
Q Consensus 99 ~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~---d~p~rI~~~~ 175 (231)
.++.++.+++||++||+++.|+++|++|+|+|+++++++. +.+.+.+.+++++...+|+.+.++ +++.++.+..
T Consensus 2 ~~~~~~~i~a~~e~v~~~l~D~~~~~~w~p~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (144)
T cd05018 2 KISGEFRIPAPPEEVWAALNDPEVLARCIPGCESLEKIGP---NEYEATVKLKVGPVKGTFKGKVELSDLDPPESYTITG 78 (144)
T ss_pred eeeeEEEecCCHHHHHHHhcCHHHHHhhccchhhccccCC---CeEEEEEEEEEccEEEEEEEEEEEEecCCCcEEEEEE
Confidence 5788999999999999999999999999999999888763 335677777777776777655554 4556777765
Q ss_pred ccc--ccccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH--HHhhhhhc
Q 026904 176 SDS--SLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL--VFHIMLCQ 230 (231)
Q Consensus 176 ~es--g~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~--v~~~Mi~~ 230 (231)
... +.+..+.+.|+|+|. +++|+|++.++++++.++ +.|.+.++ .++.|+.+
T Consensus 79 ~~~~~~~~~~~~~~~~l~~~--~~gT~v~~~~~~~~~g~l-~~l~~~~~~~~~~~~~~~ 134 (144)
T cd05018 79 EGKGGAGFVKGTARVTLEPD--GGGTRLTYTADAQVGGKL-AQLGSRLIDGAARKLINQ 134 (144)
T ss_pred EEcCCCceEEEEEEEEEEec--CCcEEEEEEEEEEEccCh-hhhCHHHHHHHHHHHHHH
Confidence 432 347789999999998 378999999999999875 55555555 45555443
No 12
>cd07824 SRPBCC_6 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.67 E-value=2.3e-15 Score=121.37 Aligned_cols=126 Identities=12% Similarity=0.193 Sum_probs=96.4
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEE---EcccCeEEEEEEEEEe-cCCCeEEEE
Q 026904 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELE---IGFKFLVESYVSHVEL-NRPKFVKTT 174 (231)
Q Consensus 99 ~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~---Vgf~g~~e~ytSrv~~-d~p~rI~~~ 174 (231)
.|+.+..|++||++||++++|+++||+|+|+|+++++++..++....+++. .+..+...+++.+++- ++++++.+.
T Consensus 2 ~~~~~~~i~ap~e~Vw~~~tD~~~~~~w~~~v~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~ 81 (146)
T cd07824 2 RFHTVWRIPAPPEAVWDVLVDAESWPDWWPGVERVVELEPGDEAGIGARRRYTWRGLLPYRLRFELRVTRIEPLSLLEVR 81 (146)
T ss_pred cceEEEEecCCHHHHHHHHhChhhcchhhhceEEEEEccCCCCCCcceEEEEEEEecCCcEEEEEEEEEeecCCcEEEEE
Confidence 367788899999999999999999999999999999998522222234443 3445666778877644 677788887
Q ss_pred ecccccccceeeEEEEeeCCCCCceEEEEEEEEEeCCh---HHHHHHHHHH--HHhhhhh
Q 026904 175 ASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSP---LYRQVMVLHL--VFHIMLC 229 (231)
Q Consensus 175 ~~esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~sp---L~~~la~~~~--v~~~Mi~ 229 (231)
. + |+|+. .+.|+|++. +++|+|++++++++++| +++.++++++ +...|++
T Consensus 82 ~-~-g~~~~-~~~~~~~~~--~~gt~vt~~~~~~~~~~~~~~l~~l~~~l~~~~~~~~~~ 136 (146)
T cd07824 82 A-S-GDLEG-VGRWTLAPD--GSGTVVRYDWEVRTTKPWMNLLAPLARPVFRWNHRRVMR 136 (146)
T ss_pred E-E-EeeeE-EEEEEEEEc--CCCEEEEEEEEEEcCHHHHHhhhHhhhhHHHHhHHHHHH
Confidence 5 4 77775 799999997 36799999999999998 6666666666 6666654
No 13
>cd07818 SRPBCC_1 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.62 E-value=1.7e-14 Score=115.48 Aligned_cols=121 Identities=17% Similarity=0.185 Sum_probs=89.0
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeC---CC-C-eEEEEEEEcccCeEEEEEEEEEecCCCeEEE
Q 026904 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHN---PD-G-SFDAELEIGFKFLVESYVSHVELNRPKFVKT 173 (231)
Q Consensus 99 ~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~---~~-g-~~~Ael~Vgf~g~~e~ytSrv~~d~p~rI~~ 173 (231)
.++.++.|++|+++||++++|+++||+|.|||..+..+++. .+ + ..+.++...-+.....| ....++||+++.+
T Consensus 3 ~~~~s~~I~ap~e~V~~~i~D~~~~~~W~p~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~-~v~~~~p~~~i~~ 81 (150)
T cd07818 3 RVERSIVINAPPEEVFPYVNDLKNWPEWSPWEKLDPDMKRTYSGPDSGVGASYSWEGNDKVGEGEM-EITESVPNERIEY 81 (150)
T ss_pred EEEEEEEEeCCHHHHHHHHhCcccCcccCchhhcCcceEEEecCCCCCCCeEEEEecCCcccceEE-EEEecCCCcEEEE
Confidence 68899999999999999999999999999999987666541 11 1 12223332221011222 3456678889998
Q ss_pred Eeccccccc-ceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 174 TASDSSLFD-HLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 174 ~~~esg~Fk-~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
+....++++ ...+.|+|+|.+ ++|+|++.++|++..+....+++.++
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~--~gT~v~~~~~~~~~~~~~~~~~~~~~ 129 (150)
T cd07818 82 ELRFIKPFEATNDVEFTLEPVG--GGTKVTWGMSGELPFPLKLMYLFLDM 129 (150)
T ss_pred EEEecCCccccceEEEEEEEcC--CceEEEEEEEecCCchHHHHHHHhhH
Confidence 887568885 899999999983 68999999999999887766665554
No 14
>cd08876 START_1 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=99.57 E-value=5.6e-14 Score=118.22 Aligned_cols=134 Identities=13% Similarity=0.154 Sum_probs=101.8
Q ss_pred cccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccC-e-EEEEEEEEEec--C-CCe
Q 026904 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKF-L-VESYVSHVELN--R-PKF 170 (231)
Q Consensus 96 ~m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g-~-~e~ytSrv~~d--~-p~r 170 (231)
.+..++.+.+++++|++||+++.|+|.||+|.|+|.+++|+++.+++...+.+.+.... + ...|+...... . ++.
T Consensus 39 ~~~~~k~~~~i~~s~e~v~~vi~d~e~~~~w~~~~~~~~vie~~~~~~~i~~~~~~~p~pvs~Rdfv~~~~~~~~~~~~~ 118 (195)
T cd08876 39 PLKEFKAVAEVDASIEAFLALLRDTESYPQWMPNCKESRVLKRTDDNERSVYTVIDLPWPVKDRDMVLRSTTEQDADDGS 118 (195)
T ss_pred CeEEEEEEEEEeCCHHHHHHHHhhhHhHHHHHhhcceEEEeecCCCCcEEEEEEEecccccCCceEEEEEEEEEcCCCCE
Confidence 35688999999999999999999999999999999999999998765556666666553 2 33455443222 1 334
Q ss_pred --EEEEecccc-c-------ccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH--HHhhhhhc
Q 026904 171 --VKTTASDSS-L-------FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL--VFHIMLCQ 230 (231)
Q Consensus 171 --I~~~~~esg-~-------Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~--v~~~Mi~~ 230 (231)
|.+...+.. | ++.+.|.|.|+|.+ +++|+|+|.+.++++.+++..+++.++ ....+++|
T Consensus 119 ~~i~~~s~~~~~P~~~~~vR~~~~~~~~~i~~~~-~~~t~vt~~~~~dp~g~iP~~lv~~~~~~~~~~~l~~ 189 (195)
T cd08876 119 VTITLEAAPEALPEQKGYVRIKTVEGQWTFTPLG-NGKTRVTYQAYADPGGSIPGWLANAFAKDAPYNTLEN 189 (195)
T ss_pred EEEEeecCCccCCCCCCeEEceeceeeEEEEECC-CCeEEEEEEEEeCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 334333221 2 67889999999985 678999999999999999999999998 45455544
No 15
>cd07820 SRPBCC_3 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.55 E-value=1.6e-13 Score=109.49 Aligned_cols=120 Identities=12% Similarity=0.135 Sum_probs=98.9
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCC---eEEEEEEEcccCeEEEEEEEEE-ecCCCeEEEEe
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDG---SFDAELEIGFKFLVESYVSHVE-LNRPKFVKTTA 175 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g---~~~Ael~Vgf~g~~e~ytSrv~-~d~p~rI~~~~ 175 (231)
++.+..|++|+++||+.++|++++|+|.|.|.+++++...++. ..+..+.+...++.-+|+++++ ++|+.++.+++
T Consensus 1 ~~~s~~I~ap~e~V~~~~~d~~~~~~~~p~~~~v~~~~~~~~~~~~G~~~~~~~~~~~~~~~w~~~it~~~p~~~f~~~~ 80 (137)
T cd07820 1 LERSTVIPAPIEEVFDFHSRPDNLERLTPPWLEFAVLGRTPGLIYGGARVTYRLRHFGIPQRWTTEITEVEPPRRFVDEQ 80 (137)
T ss_pred CeEEEEcCCCHHHHHHHHcCcchHHhcCCCCCCeEEEecCCCcccCCcEEEEEEEecCCceEEEEEEEEEcCCCeEEEEe
Confidence 4678899999999999999999999999999999999754321 1245667777777789998865 45566899987
Q ss_pred cccccccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 176 SDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 176 ~esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
.. |+|+..+.+|+|++.+ ++|+|+..++|+.....++.++.+.+
T Consensus 81 ~~-G~~~~w~h~~~f~~~~--~gT~vt~~v~~~~p~g~lg~~~~~~~ 124 (137)
T cd07820 81 VS-GPFRSWRHTHRFEAIG--GGTLMTDRVEYRLPLGPLGRLAAPLV 124 (137)
T ss_pred cc-CCchhCEEEEEEEECC--CceEEEEEEEEeCCchhHHHHHHHHH
Confidence 65 8999999999999983 57999999999998778888877764
No 16
>cd08865 SRPBCC_10 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.53 E-value=3.6e-13 Score=104.35 Aligned_cols=108 Identities=16% Similarity=0.144 Sum_probs=84.9
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCC-eEEEEEEEcccCeEEEEEEEEEe-cCCCeEEEEecc
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDG-SFDAELEIGFKFLVESYVSHVEL-NRPKFVKTTASD 177 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g-~~~Ael~Vgf~g~~e~ytSrv~~-d~p~rI~~~~~e 177 (231)
++.++.|++|+++||+++.|+++|++|.|+|..++++...+.+ .....+.+.++++..+++.+++. +||+++.+....
T Consensus 1 ~~~~~~i~ap~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~v~~~~p~~~~~~~~~~ 80 (140)
T cd08865 1 VEESIVIERPVEEVFAYLADFENAPEWDPGVVEVEKITDGPVGVGTRYHQVRKFLGRRIELTYEITEYEPGRRVVFRGSS 80 (140)
T ss_pred CceEEEEcCCHHHHHHHHHCccchhhhccCceEEEEcCCCCCcCccEEEEEEEecCceEEEEEEEEEecCCcEEEEEecC
Confidence 3578899999999999999999999999999999988654321 13455566677777777776654 667788887744
Q ss_pred cccccceeeEEEEeeCCCCCceEEEEEEEEEeCC
Q 026904 178 SSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHS 211 (231)
Q Consensus 178 sg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~s 211 (231)
++++ ..+.|+|++.+ ++|+|+++++|+++.
T Consensus 81 -~~~~-~~~~~~~~~~~--~~t~v~~~~~~~~~~ 110 (140)
T cd08865 81 -GPFP-YEDTYTFEPVG--GGTRVRYTAELEPGG 110 (140)
T ss_pred -CCcc-eEEEEEEEEcC--CceEEEEEEEEccch
Confidence 6665 68999999983 579999999999854
No 17
>cd07821 PYR_PYL_RCAR_like Pyrabactin resistance 1 (PYR1), PYR1-like (PYL), regulatory component of abscisic acid receptors (RCARs), and related proteins. The PYR/PYL/RCAR-like family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. PYR/PYL/RCAR plant proteins are receptors involved in signal transduction. They bind abscisic acid (ABA) and mediate its signaling. ABA is a vital plant hormone, which regulates plant growth, development, and response to environmental stresses. Upon binding ABA, these plant proteins interact with a type 2C protein phosphatase (PP2C), such as ABI1 and ABI2, and inhibit their activity. When ABA is bound, a loop (designated the gate/CL2 loop) closes over the ligand binding pocket, resulting in the weakening of the inactive PYL dimer and facilitating type 2C protein phosphatase binding. In the ABA:PYL1:ABI1 complex, the gate
Probab=99.53 E-value=4.7e-13 Score=103.99 Aligned_cols=118 Identities=8% Similarity=0.122 Sum_probs=89.3
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCC-CCeEEEEEEEcccCeEEEEEEEE-EecCC-CeEEEEe
Q 026904 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNP-DGSFDAELEIGFKFLVESYVSHV-ELNRP-KFVKTTA 175 (231)
Q Consensus 99 ~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~-~g~~~Ael~Vgf~g~~e~ytSrv-~~d~p-~rI~~~~ 175 (231)
.++.++.|++|+++||+++.|.++|++|.|++++++++...+ .|. ...+....+ ..+..++ .++++ +++.+..
T Consensus 2 ~i~~~~~i~a~~~~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~~g~-~~~~~~~~g---~~~~~~i~~~~~~~~~i~~~~ 77 (140)
T cd07821 2 KVTVSVTIDAPADKVWALLSDFGGLHKWHPAVASCELEGGGPGVGA-VRTVTLKDG---GTVRERLLALDDAERRYSYRI 77 (140)
T ss_pred cEEEEEEECCCHHHHHHHHhCcCchhhhccCcceEEeecCCCCCCe-EEEEEeCCC---CEEEEEehhcCccCCEEEEEe
Confidence 578899999999999999999999999999999999988653 222 223344332 2233333 35677 7899988
Q ss_pred ccc-ccccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHH
Q 026904 176 SDS-SLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLH 221 (231)
Q Consensus 176 ~es-g~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~ 221 (231)
... .++....+.|+|+|.+ +++|+|++.++|+.+.+++..+++..
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~-~~~t~v~~~~~~~~~~~~~~~~~~~~ 123 (140)
T cd07821 78 VEGPLPVKNYVATIRVTPEG-DGGTRVTWTAEFDPPEGLTDELARAF 123 (140)
T ss_pred cCCCCCcccceEEEEEEECC-CCccEEEEEEEEecCCCcchHHHHHH
Confidence 654 6778899999999984 46899999999999986555554444
No 18
>PF10604 Polyketide_cyc2: Polyketide cyclase / dehydrase and lipid transport; InterPro: IPR019587 This family contains polyketide cylcases/dehydrases which are enzymes involved in polyketide synthesis. It also includes other proteins of the START superfamily []. ; PDB: 3QRZ_C 3CNW_A 3P9V_A 3OQU_B 3NEF_B 3JRQ_B 3KAY_A 3JRS_A 3KDJ_A 3NMN_C ....
Probab=99.41 E-value=1.3e-11 Score=95.86 Aligned_cols=106 Identities=16% Similarity=0.206 Sum_probs=80.1
Q ss_pred ccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEE-EEecC-CCeEEEE
Q 026904 97 SKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSH-VELNR-PKFVKTT 174 (231)
Q Consensus 97 m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSr-v~~d~-p~rI~~~ 174 (231)
|.+++.++.|++||++||++++|+++|++|.|.+.+++++..++. . ....+...|. ..++.+ ..+++ +..+.++
T Consensus 1 M~~~~~~~~v~a~~e~V~~~l~d~~~~~~w~~~~~~~~~~~~~~~-~--~~~~~~~~g~-~~~~~~i~~~~~~~~~~~~~ 76 (139)
T PF10604_consen 1 MFKVEVSIEVPAPPEAVWDLLSDPENWPRWWPGVKSVELLSGGGP-G--TERTVRVAGR-GTVREEITEYDPEPRRITWR 76 (139)
T ss_dssp -EEEEEEEEESS-HHHHHHHHTTTTGGGGTSTTEEEEEEEEECST-E--EEEEEEECSC-SEEEEEEEEEETTTTEEEEE
T ss_pred CEEEEEEEEECCCHHHHHHHHhChhhhhhhhhceEEEEEcccccc-c--eeEEEEeccc-cceeEEEEEecCCCcEEEEE
Confidence 678999999999999999999999999999999999999884432 2 2234444442 223322 33455 6788888
Q ss_pred ecccccccceeeEEEEeeCCCCCceEEEEEEEEEe
Q 026904 175 ASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKF 209 (231)
Q Consensus 175 ~~esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef 209 (231)
.. ..++....+.|+|+|.+ ++|+|++.++|++
T Consensus 77 ~~-~~~~~~~~~~~~~~~~~--~gt~v~~~~~~~~ 108 (139)
T PF10604_consen 77 FV-PSGFTNGTGRWRFEPVG--DGTRVTWTVEFEP 108 (139)
T ss_dssp EE-SSSSCEEEEEEEEEEET--TTEEEEEEEEEEE
T ss_pred EE-ecceeEEEEEEEEEEcC--CCEEEEEEEEEEE
Confidence 86 46677789999999984 5699999999998
No 19
>cd07823 SRPBCC_5 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.39 E-value=7.8e-12 Score=100.77 Aligned_cols=126 Identities=12% Similarity=0.151 Sum_probs=93.9
Q ss_pred EEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEe---c-CCCeEEEEec
Q 026904 101 EERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVEL---N-RPKFVKTTAS 176 (231)
Q Consensus 101 ~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~---d-~p~rI~~~~~ 176 (231)
+.+..+++||++||+++.|+++|+.|+|.|+..+++. ++.+.++++++.+++...|+-++++ + +|+++.+...
T Consensus 2 ~~~~~v~a~pe~vw~~l~D~~~~~~~~pg~~~~~~~~---~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (146)
T cd07823 2 ENEFTVPAPPDRVWALLLDIERVAPCLPGASLTEVEG---DDEYKGTVKVKLGPISASFKGTARLLEDDEAARRAVLEAT 78 (146)
T ss_pred CceEEecCCHHHHHHHhcCHHHHHhcCCCceeccccC---CCeEEEEEEEEEccEEEEEEEEEEEEeccCCCcEEEEEEE
Confidence 5678899999999999999999999999999887643 2457888999999998888655444 3 5667766542
Q ss_pred cc-c---cccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH-HHhhhhhcC
Q 026904 177 DS-S---LFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL-VFHIMLCQY 231 (231)
Q Consensus 177 es-g---~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~-v~~~Mi~~~ 231 (231)
.. . -.-.....|+++|. +++|+|++++++++..|+....-..+- ++++|+++|
T Consensus 79 g~~~~~~g~~~~~~~~~l~~~--~~gT~v~~~~~~~~~g~l~~l~~~~v~~~~~~~~~~~ 136 (146)
T cd07823 79 GKDARGQGTAEATVTLRLSPA--GGGTRVTVDTDLALTGKLAQFGRGGIGDVAGRLLAQF 136 (146)
T ss_pred EecCCCcceEEEEEEEEEEec--CCcEEEEEEEEEEEeeEhHHhChhHHHHHHHHHHHHH
Confidence 10 0 11145668999985 478999999999999998665533333 777777653
No 20
>cd07812 SRPBCC START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC (SRPBCC) ligand-binding domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket; they bind diverse ligands. Included in this superfamily are the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), as well as the SRPBCC domains of phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of this superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.30 E-value=1.1e-10 Score=87.54 Aligned_cols=112 Identities=18% Similarity=0.237 Sum_probs=82.1
Q ss_pred EEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEccc-CeEEEEEEEEEe-cCCCeEEEEeccc
Q 026904 101 EERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK-FLVESYVSHVEL-NRPKFVKTTASDS 178 (231)
Q Consensus 101 ~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~-g~~e~ytSrv~~-d~p~rI~~~~~es 178 (231)
+.+..|++|+++||+++.|.++|++|+|+|.+++++...+. .........+. +....+..+++. +++..+.+.....
T Consensus 2 ~~~~~i~a~~~~v~~~l~d~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ 80 (141)
T cd07812 2 EASIEIPAPPEAVWDLLSDPERWPEWSPGLERVEVLGGGEG-GVGARFVGGRKGGRRLTLTSEVTEVDPPRPGRFRVTGG 80 (141)
T ss_pred cEEEEeCCCHHHHHHHHhChhhhhhhCcccceEEEcCCCCc-cceeEEEEEecCCccccceEEEEEecCCCceEEEEecC
Confidence 56889999999999999999999999999999998876442 22233333332 334455555444 4445777776553
Q ss_pred ccccceeeEEEEeeCCCCCceEEEEEEEEEeCChHH
Q 026904 179 SLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLY 214 (231)
Q Consensus 179 g~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~ 214 (231)
+......+.|+|++.. +++|+|++.+++++..++.
T Consensus 81 ~~~~~~~~~~~~~~~~-~~~t~v~~~~~~~~~~~~~ 115 (141)
T cd07812 81 GGGVDGTGEWRLEPEG-DGGTRVTYTVEYDPPGPLL 115 (141)
T ss_pred CCCcceeEEEEEEECC-CCcEEEEEEEEEecCCcch
Confidence 3334789999999984 3489999999999998863
No 21
>cd08862 SRPBCC_Smu440-like Ligand-binding SRPBCC domain of Streptococcus mutans Smu.440 and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Streptococcus mutans Smu.440 and related proteins. This domain belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Streptococcus mutans is a dental pathogen, and the leading cause of dental caries. In this pathogen, the gene encoding Smu.440 is in the same operon as the gene encoding SMU.441, a member of the MarR protein family of transcriptional regulators involved in multiple antibiotic resistance. It has been suggested that SMU.440 is involved in polyketide-like antibiotic resistance.
Probab=99.25 E-value=5.6e-10 Score=87.14 Aligned_cols=104 Identities=15% Similarity=0.207 Sum_probs=75.8
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeC-CCCeEEEEEEEcccCeEEEEEEEEEecCCCeEEEEecc
Q 026904 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHN-PDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASD 177 (231)
Q Consensus 99 ~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~-~~g~~~Ael~Vgf~g~~e~ytSrv~~d~p~rI~~~~~e 177 (231)
.++.++.|++|+++||++++|.++||+|.|.|++++++... +.|. ..++.... +....+ ....++||+++.|+...
T Consensus 2 ~~~~~~~i~Ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~~~G~-~~~~~~~~-~~~~~~-~i~~~~p~~~~~~~~~~ 78 (138)
T cd08862 2 KFEATIVIDAPPERVWAVLTDVENWPAWTPSVETVRLEGPPPAVGS-SFKMKPPG-LVRSTF-TVTELRPGHSFTWTGPA 78 (138)
T ss_pred EEEEEEEEcCCHHHHHHHHHhhhhcccccCcceEEEEecCCCCCCc-EEEEecCC-CCceEE-EEEEecCCCEEEEEecC
Confidence 57889999999999999999999999999999999998865 3232 34445442 333333 23466778889887633
Q ss_pred cccccceeeEEEEeeCCCCCceEEEEEEEEE
Q 026904 178 SSLFDHLINIWEFNPGPSPGTCNLYFLVDFK 208 (231)
Q Consensus 178 sg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFe 208 (231)
++....+.|+|++.+ +++|++++..+|.
T Consensus 79 --~~~~~~~~~~~~~~~-~~~t~l~~~~~~~ 106 (138)
T cd08862 79 --PGISAVHRHEFEAKP-DGGVRVTTSESLS 106 (138)
T ss_pred --CCEEEEEEEEEEEcC-CCcEEEEEEEEee
Confidence 334456799999974 4689988776554
No 22
>cd07822 SRPBCC_4 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=99.20 E-value=1.5e-09 Score=84.26 Aligned_cols=107 Identities=12% Similarity=0.159 Sum_probs=75.4
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEccc-CeEEEEE-EEEEecCCCeEEEEec
Q 026904 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK-FLVESYV-SHVELNRPKFVKTTAS 176 (231)
Q Consensus 99 ~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~-g~~e~yt-Srv~~d~p~rI~~~~~ 176 (231)
+++.++.|++|+++||+++.|.++|++|.|++..++......++.+ .+..... +....++ ....++||+++.++..
T Consensus 1 ~v~~~~~i~ap~~~Vw~~~~d~~~~~~w~~~~~~~~~~~~~~G~~~--~~~~~~~~~~~~~~~~~v~~~~p~~~~~~~~~ 78 (141)
T cd07822 1 TISTEIEINAPPEKVWEVLTDFPSYPEWNPFVRSATGLSLALGARL--RFVVKLPGGPPRSFKPRVTEVEPPRRLAWRGG 78 (141)
T ss_pred CeEEEEEecCCHHHHHHHHhccccccccChhheeEeccccCCCCEE--EEEEeCCCCCcEEEEEEEEEEcCCCEeEEEec
Confidence 4688999999999999999999999999999988776532222333 3333322 2333444 3356678889999875
Q ss_pred cccc-ccceeeEEEEeeCCCCCceEEEEEEEEE
Q 026904 177 DSSL-FDHLINIWEFNPGPSPGTCNLYFLVDFK 208 (231)
Q Consensus 177 esg~-Fk~L~G~W~f~p~~~~~~T~V~f~ldFe 208 (231)
..++ +-...+.|+|++.. +++|+|++..+|.
T Consensus 79 ~~~~~~~~~~~~~~~~~~~-~~~T~~~~~~~~~ 110 (141)
T cd07822 79 LPFPGLLDGEHSFELEPLG-DGGTRFVHRETFS 110 (141)
T ss_pred CCCCcEeeEEEEEEEEEcC-CCcEEEEEeeEEE
Confidence 5332 23467899999973 4789998886654
No 23
>cd07814 SRPBCC_CalC_Aha1-like Putative hydrophobic ligand-binding SRPBCC domain of Micromonospora echinospora CalC, human Aha1, and related proteins. This family includes the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Micromonospora echinospora CalC, human Aha1, and related proteins. Proteins in this group belong to the SRPBCC domain superfamily of proteins, which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM), by a self sacrificing mechanism which results in inactivation of both CalC and the highly reactive diradical enediyne species. MeCalC can also inactivate two other enediynes, shishijimicin and namenamicin. A crucial Gly of the MeCalC CLM resistance mechanism is not conserved in this subgroup. This family also includes the C-terminal, Bet v1-like domain of Aha1, one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Aha1 promotes dimer
Probab=99.05 E-value=5.7e-09 Score=81.35 Aligned_cols=109 Identities=12% Similarity=-0.027 Sum_probs=78.6
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEE-EEEEecCCCeEEEEeccc
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYV-SHVELNRPKFVKTTASDS 178 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~yt-Srv~~d~p~rI~~~~~es 178 (231)
++.++.|++||++||+++.|.++||+|.|.|....+....+ +...... .+..+...... ....+++++++.+.....
T Consensus 2 i~~s~~I~a~~~~Vw~~l~d~~~~~~w~~~~~~~~~~~~~G-g~~~~~~-~~~~g~~~~~~~~i~~~~~~~~i~~~~~~~ 79 (139)
T cd07814 2 ITIEREFDAPPELVWRALTDPELLAQWFGPTTTAEMDLRVG-GRWFFFM-TGPDGEEGWVSGEVLEVEPPRRLVFTWAFS 79 (139)
T ss_pred eEEEEEecCCHHHHHHHcCCHHHHHhhhCcCCceEEcccCC-ceEEEEE-ECCCCCEEeccEEEEEEcCCCeEEEEeccc
Confidence 67889999999999999999999999999855555544443 4433322 22222233333 345567788898887553
Q ss_pred c--cccceeeEEEEeeCCCCCceEEEEEEEEEeCCh
Q 026904 179 S--LFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSP 212 (231)
Q Consensus 179 g--~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~sp 212 (231)
+ ++......|+|.|.+ ++|+|++.+++....+
T Consensus 80 ~~~~~~~~~~~~~~~~~~--~~T~v~~~~~~~~~~~ 113 (139)
T cd07814 80 DETPGPETTVTVTLEETG--GGTRLTLTHSGFPEED 113 (139)
T ss_pred CCCCCCceEEEEEEEECC--CCEEEEEEEEccChHh
Confidence 2 467789999999983 6799999999988754
No 24
>COG5637 Predicted integral membrane protein [Function unknown]
Probab=99.02 E-value=3.2e-09 Score=90.82 Aligned_cols=120 Identities=8% Similarity=0.054 Sum_probs=105.2
Q ss_pred cccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcc-cCeEEEEEEEEEecCCC-eEEE
Q 026904 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGF-KFLVESYVSHVELNRPK-FVKT 173 (231)
Q Consensus 96 ~m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf-~g~~e~ytSrv~~d~p~-rI~~ 173 (231)
+-..+++..+|+.|++|||++=.|.|+.|.|+.|..+++|+...+ .+|.+.. .+..-+|.++++-+.|+ +|.|
T Consensus 68 ~~i~v~~~V~I~kPae~vy~~W~dLe~lP~~Mkhl~SVkVlddkr-----SrW~~~ap~g~~v~Wea~it~d~~~e~I~W 142 (217)
T COG5637 68 KPIEVEVQVTIDKPAEQVYAYWRDLENLPLWMKHLDSVKVLDDKR-----SRWKANAPLGLEVEWEAEITKDIPGERIQW 142 (217)
T ss_pred CceEEEEEEEeCChHHHHHHHHHhhhhhhHHHHhhceeeccCCCc-----cceeEcCCCCceEEEeehhhccCCCcEEee
Confidence 445789999999999999999999999999999999999998765 4677777 67888999999999887 9999
Q ss_pred EecccccccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 174 TASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 174 ~~~esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
++.+ |.=-...|.=+|.+.+ ++.|+|++.+.|....-+...+.+.+|
T Consensus 143 ~Sl~-Ga~v~NsG~VrF~~~p-g~~t~V~v~lsY~~Pgg~~~a~va~~f 189 (217)
T COG5637 143 ESLP-GARVENSGAVRFYDAP-GDSTEVKVTLSYRPPGGLLGAVVAKLF 189 (217)
T ss_pred ecCC-CCcCCCCccEEeeeCC-CCceEEEEEEEecCCccHHHHHHHHHh
Confidence 9988 4333478889999987 478999999999999999999999888
No 25
>cd07825 SRPBCC_7 Ligand-binding SRPBCC domain of an uncharacterized subfamily of proteins. Uncharacterized group of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins.
Probab=98.95 E-value=2.3e-08 Score=79.16 Aligned_cols=109 Identities=14% Similarity=0.106 Sum_probs=72.7
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEE----eCCCCeEEEEEEEcccCeEEEEEEEE-EecCCCeEEE
Q 026904 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILK----HNPDGSFDAELEIGFKFLVESYVSHV-ELNRPKFVKT 173 (231)
Q Consensus 99 ~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~----r~~~g~~~Ael~Vgf~g~~e~ytSrv-~~d~p~rI~~ 173 (231)
+++.++.|++||++||++++|.++||+|.|.+....+.. ...++.+ .+.+..++....+..++ .++|++++.+
T Consensus 1 ~i~~~~~i~ap~e~Vw~~l~d~~~~~~W~~~~~~~~~~~~~~~~~~G~~~--~~~~~~~g~~~~~~~~v~~~~p~~~l~~ 78 (144)
T cd07825 1 QVSVSRTVDAPAEAVFAVLADPRRHPEIDGSGTVREAIDGPRILAVGDVF--RMAMRLDGGPYRITNHVVAFEENRLIAW 78 (144)
T ss_pred CeEEEEEEeCCHHHHHHHHhCccccceeCCCCccccccCCCccCCCCCEE--EEEEEcCCCceEEEEEEEEECCCCEEEE
Confidence 478899999999999999999999999998544222221 1112233 33333334444566544 5777889999
Q ss_pred Eec-ccccccceeeEEEEeeCCCCCceEEEEEEEEEeC
Q 026904 174 TAS-DSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFH 210 (231)
Q Consensus 174 ~~~-esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~ 210 (231)
+.. .+.+.......|+|++.+ +++|+|++..+|+-.
T Consensus 79 ~~~~~~~~~~~~~~~~~l~~~~-~g~T~vt~~~~~~g~ 115 (144)
T cd07825 79 RPGPAGQEPGGHRWRWELEPIG-PGRTRVTETYDWSAV 115 (144)
T ss_pred EccCCCCCCCceeEEEEEEECC-CCcEEEEEEEeccCC
Confidence 864 222223456778999974 468999998877655
No 26
>cd08874 START_STARD9-like C-terminal START domain of mammalian STARD9, and related domains; lipid binding. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD9 (also known as KIAA1300), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C /PITP /Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Some members of this subfamily have N-terminal kinesin motor domains. STARD9 interacts with supervillin, a protein important for efficient cytokinesis, perhaps playing a role in coordinating microtubule motors with actin and myosin II functions at membranes. The human gene encoding STARD9 lies within a target region for LGMD2A, an autosomal recessive form of limb-girdle muscular dystrophy.
Probab=98.87 E-value=5.5e-08 Score=84.56 Aligned_cols=124 Identities=9% Similarity=0.036 Sum_probs=90.8
Q ss_pred cEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEccc--C--eEEEEEEEEEecCCC---e
Q 026904 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK--F--LVESYVSHVELNRPK---F 170 (231)
Q Consensus 98 ~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~--g--~~e~ytSrv~~d~p~---r 170 (231)
+.+..+..++++++++|+++.|++.+++|.+.|++.+|+++-++......+..... . -...|+....+..+. .
T Consensus 45 ~~~~ge~~v~as~~~v~~ll~D~~~r~~Wd~~~~~~~vl~~~~~d~~i~y~~~~~Pwp~~~~~RDfV~l~~~~~~~~~~v 124 (205)
T cd08874 45 HGFLGAGVIKAPLATVWKAVKDPRTRFLYDTMIKTARIHKTFTEDICLVYLVHETPLCLLKQPRDFCCLQVEAKEGELSV 124 (205)
T ss_pred ceEEEEEEEcCCHHHHHHHHhCcchhhhhHHhhhheeeeeecCCCeEEEEEEecCCCCCCCCCCeEEEEEEEEECCCcEE
Confidence 45666778999999999999999999999999999999998665444455555422 2 234454444442222 2
Q ss_pred EEEEeccc------c--c--ccceeeEEEEeeC---CCCCceEEEEEEEEEeC-ChHHHHHHHHHH
Q 026904 171 VKTTASDS------S--L--FDHLINIWEFNPG---PSPGTCNLYFLVDFKFH-SPLYRQVMVLHL 222 (231)
Q Consensus 171 I~~~~~es------g--~--Fk~L~G~W~f~p~---~~~~~T~V~f~ldFef~-spL~~~la~~~~ 222 (231)
|..++++. + - ...+.|.|.++|. + ++.|+|+|.+..+++ .-++.+++|.++
T Consensus 125 i~~~SV~~~~~P~~~~~~VR~~~~~~gw~i~P~~~~g-~~~t~vty~~q~DPggg~iP~~l~N~~~ 189 (205)
T cd08874 125 VACQSVYDKSMPEPGRSLVRGEILPSAWILEPVTVEG-NQYTRVIYIAQVALCGPDVPAQLLSSLS 189 (205)
T ss_pred EEEEecccccCCCCCCCeEEeeeEeeeEEEEECccCC-CCcEEEEEEEEECCCCCCCCHHHHhHHH
Confidence 33333332 1 1 1457899999998 5 468999999999999 799999999998
No 27
>cd08877 START_2 Uncharacterized subgroup of the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domain family. Functionally uncharacterized subgroup of the START domain family. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some mammalian members of the START family (STARDs), it is known which lipids bind in this pocket; these include cholesterol (STARD1, -3, -4, and -5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2, -7, and -10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). Mammalian STARDs participate in the control of various cellular processes, including lipid trafficking between intracellular compartments, lipid metabolism, and modulation of signaling events. Mutation or altered expression of STARDs is linked to diseases such as cancer, genetic disorders, a
Probab=98.83 E-value=3.5e-08 Score=85.11 Aligned_cols=133 Identities=15% Similarity=0.188 Sum_probs=95.9
Q ss_pred cccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccC-eE-EEEEEE-E---EecCCC
Q 026904 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKF-LV-ESYVSH-V---ELNRPK 169 (231)
Q Consensus 96 ~m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g-~~-e~ytSr-v---~~d~p~ 169 (231)
.+..++.+..+++|++++.+++.|++.||+|+|.|.++++++..+.......+.+++.- +. ..+..+ . .++.++
T Consensus 44 ~~~~~k~e~~i~~~~~~~~~vl~d~~~~~~W~p~~~~~~~l~~~~~~~~v~y~~~~~PwPv~~RD~v~~~~~~~~~~~~~ 123 (215)
T cd08877 44 SLLSLRMEGEIDGPLFNLLALLNEVELYKTWVPFCIRSKKVKQLGRADKVCYLRVDLPWPLSNREAVFRGFGVDRLEENG 123 (215)
T ss_pred CEEEEEEEEEecCChhHeEEEEehhhhHhhhcccceeeEEEeecCCceEEEEEEEeCceEecceEEEEEEEEEeeeccCC
Confidence 36789999999999999999999999999999999999999886544444555555442 32 223222 1 122333
Q ss_pred eE--EEEecccc-----------c--------ccceeeEEEEeeCCCCCceEEEEEEEEEeCCh-HHHHHHHHHH--HHh
Q 026904 170 FV--KTTASDSS-----------L--------FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSP-LYRQVMVLHL--VFH 225 (231)
Q Consensus 170 rI--~~~~~esg-----------~--------Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~sp-L~~~la~~~~--v~~ 225 (231)
.| .....++. | .+...|.|.|+|.+ ++.|.|++....+.+.. ++.++++.++ ...
T Consensus 124 ~i~i~~~si~~~~~~~~~~~~~iP~~~~~~vR~~~~~~~~~i~p~~-~~~t~v~~~~~~DP~g~~IP~~liN~~~k~~~~ 202 (215)
T cd08877 124 QIVILLKSIDDDPEFLKLTDLDIPSTSAKGVRRIIKYYGFVITPIS-PTKCYLRFVANVDPKMSLVPKSLLNFVARKFAG 202 (215)
T ss_pred CEEEEEecCCCCcccccccCCcCCCCCCCceEEEEecceEEEEEcC-CCCeEEEEEEEcCCCcccCCHHHHHHHHHHHHH
Confidence 33 33332211 1 14567999999984 68899999999999999 9999999988 555
Q ss_pred hhhh
Q 026904 226 IMLC 229 (231)
Q Consensus 226 ~Mi~ 229 (231)
.|+.
T Consensus 203 ~~~~ 206 (215)
T cd08877 203 LLFE 206 (215)
T ss_pred HHHH
Confidence 5554
No 28
>PF06240 COXG: Carbon monoxide dehydrogenase subunit G (CoxG); InterPro: IPR010419 The CO dehydrogenase structural genes coxMSL are flanked by nine accessory genes arranged as the cox gene cluster. The cox genes are specifically and coordinately transcribed under chemolithoautotrophic conditions in the presence of CO as carbon and energy source [].; PDB: 2NS9_A 2PCS_A.
Probab=98.81 E-value=1.6e-07 Score=75.91 Aligned_cols=123 Identities=10% Similarity=0.148 Sum_probs=89.3
Q ss_pred EEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEe---cCCCe--EEEEecc
Q 026904 103 RRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVEL---NRPKF--VKTTASD 177 (231)
Q Consensus 103 s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~---d~p~r--I~~~~~e 177 (231)
+..|++|+++||+.+.|.+.+-.=+|.|++.+.+. +.+.+.+++++++++-+|.-++++ ++|+. +.++-..
T Consensus 2 s~~v~a~~~~vw~~l~D~~~l~~ciPG~~~~e~~~----~~~~~~~~v~vG~i~~~~~g~~~~~~~~~~~~~~~~~~g~g 77 (140)
T PF06240_consen 2 SFEVPAPPEKVWAFLSDPENLARCIPGVESIEKVG----DEYKGKVKVKVGPIKGTFDGEVRITEIDPPESYTLEFEGRG 77 (140)
T ss_dssp EEEECS-HHHHHHHHT-HHHHHHHSTTEEEEEEEC----TEEEEEEEEESCCCEEEEEEEEEEEEEETTTEEEEEEEEEE
T ss_pred cEEecCCHHHHHHHhcCHHHHHhhCCCcEEeeecC----cEEEEEEEEEeccEEEEEEEEEEEEEcCCCcceEeeeeccC
Confidence 56799999999999999999999999999987765 257999999999999999988776 44554 5665543
Q ss_pred cccccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH--HHhhhhhcC
Q 026904 178 SSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL--VFHIMLCQY 231 (231)
Q Consensus 178 sg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~--v~~~Mi~~~ 231 (231)
.+---...+.=++...++ ++|+|+|+.++++..++-. +-+.+. +++.|+++|
T Consensus 78 ~~~~~~~~~~~~~~~~~~-~~T~v~~~~~~~~~G~la~-~g~~~i~~~~~~l~~~f 131 (140)
T PF06240_consen 78 RGGGSSASANITLSLEDD-GGTRVTWSADVEVGGPLAS-LGQRLIESVARRLIEQF 131 (140)
T ss_dssp CTCCEEEEEEEEEEECCC-TCEEEEEEEEEEEECHHHH-C-HHHHHHHHHHHHHHH
T ss_pred CccceEEEEEEEEEcCCC-CCcEEEEEEEEEEccCHHH-hhHHHHHHHHHHHHHHH
Confidence 332333344444444432 3499999999999988744 444455 888888764
No 29
>cd08905 START_STARD1-like Cholesterol-binding START domain of mammalian STARD1 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD1 has a high affinity for cholesterol. It can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synthesis deficiency and an accumulation of cholesterol in
Probab=98.77 E-value=8.4e-08 Score=83.03 Aligned_cols=130 Identities=14% Similarity=0.192 Sum_probs=90.4
Q ss_pred cEEEEEEEEcCCHHHHH-HHHHchhcccCCCCCcceEEEEEeCCCCeEEEE-EEEccc--Ce-EEEEEEEEEecCC--Ce
Q 026904 98 KVYEERRVLGYSPEQLF-DVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAE-LEIGFK--FL-VESYVSHVELNRP--KF 170 (231)
Q Consensus 98 ~~~~~s~~I~appeqVy-dLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ae-l~Vgf~--g~-~e~ytSrv~~d~p--~r 170 (231)
+.++.+.++++++++++ .++.|++.+++|.+-|.+++++++.++...... ....+. .+ ...|+.+..+.+. ..
T Consensus 49 k~~k~e~~i~~~~~~l~~~l~~d~e~~~~W~~~~~~~~vl~~id~~~~i~y~~~~p~p~~~vs~RD~V~~~~~~~~~~~~ 128 (209)
T cd08905 49 KVFRLEVVVDQPLDNLYSELVDRMEQMGEWNPNVKEVKILQRIGKDTLITHEVAAETAGNVVGPRDFVSVRCAKRRGSTC 128 (209)
T ss_pred cEEEEEEEecCCHHHHHHHHHhchhhhceecccchHHHHHhhcCCCceEEEEEeccCCCCccCccceEEEEEEEEcCCcE
Confidence 67889999999999999 888899999999999999999998765443222 223322 12 2345444444332 22
Q ss_pred EEE-Eeccc-------cc--ccceeeEEEEeeCCC-CCceEEEEEEEEEeCChHHHHHHHHHHHHhhhh
Q 026904 171 VKT-TASDS-------SL--FDHLINIWEFNPGPS-PGTCNLYFLVDFKFHSPLYRQVMVLHLVFHIML 228 (231)
Q Consensus 171 I~~-~~~es-------g~--Fk~L~G~W~f~p~~~-~~~T~V~f~ldFef~spL~~~la~~~~v~~~Mi 228 (231)
+.. .+.+. |- -+...|.|.|+|.++ ++.|+|++.+..+++..|+..+++.+ +++.|+
T Consensus 129 ~~~~~s~~~~~~P~~~~~VR~~~~~~~w~l~p~~~~~~~t~v~~~~~~DpkG~iP~~lvN~~-~~~~~~ 196 (209)
T cd08905 129 VLAGMATHFGLMPEQKGFIRAENGPTCIVLRPLAGDPSKTKLTWLLSIDLKGWLPKSIINQV-LSQTQV 196 (209)
T ss_pred EEEEEeecCCCCCCCCCeEEEEeeccEEEEEECCCCCCceEEEEEEeecCCCCCCHHHHHHH-hHHhHH
Confidence 221 11111 11 144679999999852 36899999999999999999999998 444443
No 30
>cd08906 START_STARD3-like Cholesterol-binding START domain of mammalian STARD3 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD3 (also known as metastatic lymph node 64/MLN64) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD3 has a high affinity for cholesterol. It may function in trafficking endosomal cholesterol to a cytosolic acceptor or membrane. In addition to having a cytoplasmic START cholesterol-binding domain, STARD3 also contains an N-terminal MENTAL cholesterol-binding and protein-protein interaction domain. The MENTAL domain contains transmembrane helices and anchors MLN64 to endosome membranes. The gene encoding STARD3 is overexpressed in about 25% of breast cancers.
Probab=98.77 E-value=1.6e-07 Score=81.46 Aligned_cols=130 Identities=12% Similarity=0.245 Sum_probs=90.0
Q ss_pred cEEEEEEEEcCCHHHHH-HHHHchhcccCCCCCcceEEEEEeCCCCeEEEE-EEEccc--Ce-EEEEEEEEEecCC--Ce
Q 026904 98 KVYEERRVLGYSPEQLF-DVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAE-LEIGFK--FL-VESYVSHVELNRP--KF 170 (231)
Q Consensus 98 ~~~~~s~~I~appeqVy-dLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ae-l~Vgf~--g~-~e~ytSrv~~d~p--~r 170 (231)
+.++.+..+++|++++| +|+.|++.+++|.+.|.+++++++-+++..... +...+. .+ ...|+....+.+. ..
T Consensus 49 ~~fk~~~~v~~~~~~l~~~ll~D~~~~~~W~~~~~~~~vi~~~~~~~~i~Y~v~~p~~~~pv~~RDfV~~r~~~~~~~~~ 128 (209)
T cd08906 49 KTFILKAFMQCPAELVYQEVILQPEKMVLWNKTVSACQVLQRVDDNTLVSYDVAAGAAGGVVSPRDFVNVRRIERRRDRY 128 (209)
T ss_pred cEEEEEEEEcCCHHHHHHHHHhChhhccccCccchhhhheeeccCCcEEEEEEccccccCCCCCCceEEEEEEEecCCcE
Confidence 67899999999999998 699999999999999999999998765443332 222221 22 4446555544332 23
Q ss_pred EEEEe-cc-------cccc---cceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHHHHhhhh
Q 026904 171 VKTTA-SD-------SSLF---DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHLVFHIML 228 (231)
Q Consensus 171 I~~~~-~e-------sg~F---k~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~v~~~Mi 228 (231)
|.+.. +. .|-. .+..|.|.+.+..+++.|+|+|.+..+++.-|+..++|.+ +++.|+
T Consensus 129 i~~~~sv~~~~~P~~~~~VR~~~~~~G~~i~~~~~~~~~t~vt~~~~~Dp~G~lP~~lvN~~-~~~~~~ 196 (209)
T cd08906 129 VSAGISTTHSHKPPLSKYVRGENGPGGFVVLKSASNPSVCTFIWILNTDLKGRLPRYLIHQS-LAATMF 196 (209)
T ss_pred EEEEEEEecCCCCCCCCeEEEeeeccEEEEEECCCCCCceEEEEEEecCCCCCCCHHHHHHH-HHHHHH
Confidence 33221 00 0111 2567888776522357899999999999999999999998 555554
No 31
>cd07816 Bet_v1-like Ligand-binding bet_v_1 domain of major pollen allergen of white birch (Betula verrucosa), Bet v 1, and related proteins. This family includes the ligand binding domain of Bet v 1 (the major pollen allergen of white birch, Betula verrucosa) and related proteins. In addition to birch Bet v 1, this family includes other plant intracellular pathogenesis-related class 10 (PR-10) proteins, norcoclaurine synthases (NCSs), cytokinin binding proteins (CSBPs), major latex proteins (MLPs), and ripening-related proteins. It belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Members of this family binds a diverse range of ligands. Bet v 1 can bind brassinosteroids, cytokinins, flavonoids and fatty acids. Hyp-1, a PR-10 from Hypericum perforatum/St. John's wort, catalyzes the condensation of two molecules of emodin to the bioactive naphthodianth
Probab=98.74 E-value=1.1e-06 Score=71.82 Aligned_cols=112 Identities=16% Similarity=0.227 Sum_probs=84.9
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhc-c-cCCCCCcceEEEEEeCC-CCeEEEEEEEcccCeEEEEEEEEE-ecCC-CeEEE
Q 026904 99 VYEERRVLGYSPEQLFDVVAAVDL-Y-HGFVPWCQRSEILKHNP-DGSFDAELEIGFKFLVESYVSHVE-LNRP-KFVKT 173 (231)
Q Consensus 99 ~~~~s~~I~appeqVydLVaDVe~-Y-PeFvP~c~~srVL~r~~-~g~~~Ael~Vgf~g~~e~ytSrv~-~d~p-~rI~~ 173 (231)
.++.+..|++||+++|+++.|.+. . +.|.|.++++++++-++ .|. .-.|+..-++-...+..+++ +|+. +++.+
T Consensus 2 ~~~~e~~i~a~ad~vW~~~~~~~~~~~~~~~p~v~~~~~~eG~~~~Gs-vR~~~~~~~~~~~~~kE~l~~~D~~~~~~~y 80 (148)
T cd07816 2 TLEHEVELKVPAEKLWKAFVLDSHLLPPKLPPVIKSVELLEGDGGPGS-IKLITFGPGGKVKYVKERIDAVDEENKTYKY 80 (148)
T ss_pred cEEEEEEecCCHHHHHHHHhcChhhccccccccccEEEEEecCCCCce-EEEEEEcCCCcceEEEEEEEEEcccccEEEE
Confidence 578899999999999999999994 4 66889999999887642 133 23455554442344666655 4553 48999
Q ss_pred Eeccccc----ccceeeEEEEeeCCCCCceEEEEEEEEEeCCh
Q 026904 174 TASDSSL----FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSP 212 (231)
Q Consensus 174 ~~~esg~----Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~sp 212 (231)
+.+++++ ++.+.++.++.|. ++++|.|.+.++|+...+
T Consensus 81 ~vveg~~~~~~~~~y~~t~~v~~~-~~~~t~v~Wt~~ye~~~~ 122 (148)
T cd07816 81 TVIEGDVLKDGYKSYKVEIKFVPK-GDGGCVVKWTIEYEKKGD 122 (148)
T ss_pred EEEecccccCceEEEEEEEEEEEC-CCCCEEEEEEEEEEECCC
Confidence 9887544 7888999999998 467899999999998885
No 32
>cd08913 START_STARD14-like Lipid-binding START domain of mammalian STARDT14 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. There are two splice variants of
Probab=98.61 E-value=8.9e-07 Score=78.88 Aligned_cols=124 Identities=6% Similarity=-0.045 Sum_probs=87.2
Q ss_pred cccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEccc---Ce-EEEEEEEEEecC--CC
Q 026904 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK---FL-VESYVSHVELNR--PK 169 (231)
Q Consensus 96 ~m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~---g~-~e~ytSrv~~d~--p~ 169 (231)
....++.+..+++|++++|+++.|++.+++|.+.|.+++++++.++... ........ ++ ...|+....+.+ ..
T Consensus 79 ~~~~fK~e~~vd~s~e~v~~lL~D~~~r~~Wd~~~~e~~vIe~id~~~~-vY~v~~~p~~~pvs~RDfV~~~s~~~~~~~ 157 (240)
T cd08913 79 KFLSFKVEMVVHVDAAQAFLLLSDLRRRPEWDKHYRSCELVQQVDEDDA-IYHVTSPSLSGHGKPQDFVILASRRKPCDN 157 (240)
T ss_pred CccEEEEEEEEcCCHHHHHHHHhChhhhhhhHhhccEEEEEEecCCCcE-EEEEecCCCCCCCCCCeEEEEEEEEeccCC
Confidence 3467888889999999999999999999999999999999998754432 22222222 22 344555443322 11
Q ss_pred ---e-EEEEeccccc---------ccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 170 ---F-VKTTASDSSL---------FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 170 ---r-I~~~~~esg~---------Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
. |...++.... ...+.|.|.+.|.+ ++.|+|+|....+.+ -|+..+++.+.
T Consensus 158 g~~yii~~~sv~~P~~Pp~kgyVR~~~~~ggw~i~p~~-~~~t~vtY~~~~dPG-~LP~~~~N~~~ 221 (240)
T cd08913 158 GDPYVIALRSVTLPTHPPTPEYTRGETLCSGFCIWEES-DQLTKVSYYNQATPG-VLPYISTDIAG 221 (240)
T ss_pred CccEEEEEEEeecCCCCCCCCcEEeeecccEEEEEECC-CCcEEEEEEEEeCCc-cccHHHhhhhh
Confidence 1 3333321111 24578999999984 688999999988877 99999999885
No 33
>cd08873 START_STARD14_15-like Lipid-binding START domain of mammalian STARDT14, -15, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian brown fat-inducible STARD14 (also known as Acyl-Coenzyme A Thioesterase 11 or ACOT11, BFIT, THEA, THEM1, KIAA0707, and MGC25974), STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114), and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD14/ACOT11 and STARD15/ACOT12 are type II acetyl-CoA thioesterases; they catalyze the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Human STARD14 displays acetyl-CoA thioesterase activity towards medium(C12)- and long(C16)-chain fatty acyl-CoA substrates. Rat CACH hydrolyzes acetyl-CoA to acetate an
Probab=98.57 E-value=1.8e-06 Score=76.79 Aligned_cols=116 Identities=7% Similarity=-0.071 Sum_probs=82.0
Q ss_pred cccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEccc--CeEEEEEEEEEecC--CC--
Q 026904 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK--FLVESYVSHVELNR--PK-- 169 (231)
Q Consensus 96 ~m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~--g~~e~ytSrv~~d~--p~-- 169 (231)
....++.+..++++++++|+++.|++.+++|.+.|.+++++++-++......+..... .-...|+....+.+ +.
T Consensus 75 ~~l~fk~e~~vd~s~~~v~dlL~D~~~R~~WD~~~~e~evI~~id~d~~iyy~~~p~PwPvk~RDfV~~~s~~~~~~~~~ 154 (235)
T cd08873 75 GVLSFCVELKVQTCASDAFDLLSDPFKRPEWDPHGRSCEEVKRVGEDDGIYHTTMPSLTSEKPNDFVLLVSRRKPATDGD 154 (235)
T ss_pred CceEEEEEEEecCCHHHHHHHHhCcchhhhhhhcccEEEEEEEeCCCcEEEEEEcCCCCCCCCceEEEEEEEEeccCCCC
Confidence 4567888889999999999999999999999999999999997654433344444432 22344555444421 11
Q ss_pred --eEEEEecc-------ccc--ccceeeEEEEeeCCCCCceEEEEEEEEEeCCh
Q 026904 170 --FVKTTASD-------SSL--FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSP 212 (231)
Q Consensus 170 --rI~~~~~e-------sg~--Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~sp 212 (231)
.|...+++ .|- .+.+.|.|.++|.+ +++|+|+|....+.+.-
T Consensus 155 ~~~I~~~SV~h~~~Pp~kgyVR~~~~~ggW~I~p~~-~~~t~VtY~~~~dPg~~ 207 (235)
T cd08873 155 PYKVAFRSVTLPRVPQTPGYSRTEVACAGFVIRQDC-GTCTEVSYYNETNPKLL 207 (235)
T ss_pred eEEEEEeeeecccCCCCCCeEEEEEEeeeEEEEECC-CCcEEEEEEEEcCCCcc
Confidence 23344333 111 25578999999984 68999999999998754
No 34
>cd08903 START_STARD5-like Lipid-binding START domain of mammalian STARD5 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD5, and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD5 is ubiquitously expressed, with highest levels in liver and kidney. STARD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression of the gene encoding STARD5 is increased by ER stress, and its mRNA and protein levels are elevated in a type I diabetic mouse model of human diabetic nephropathy.
Probab=98.54 E-value=2e-06 Score=74.38 Aligned_cols=127 Identities=15% Similarity=0.124 Sum_probs=86.3
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcc--cCCCCCcceEEEEEeCCCCeEEEEEEEccc--C-e-EEEEEEEEEecC--CCe
Q 026904 99 VYEERRVLGYSPEQLFDVVAAVDLY--HGFVPWCQRSEILKHNPDGSFDAELEIGFK--F-L-VESYVSHVELNR--PKF 170 (231)
Q Consensus 99 ~~~~s~~I~appeqVydLVaDVe~Y--PeFvP~c~~srVL~r~~~g~~~Ael~Vgf~--g-~-~e~ytSrv~~d~--p~r 170 (231)
.++.+.+++++++++|+++.|++.+ ++|.+-|.+.+++++-+++.....+...+. + + ...|.....+.+ ++.
T Consensus 47 ~~k~e~~i~~s~~~~~~~l~d~~~~~r~~W~~~~~~~~vle~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~d~~ 126 (208)
T cd08903 47 LYKGEGIVYATLEQVWDCLKPAAGGLRVKWDQNVKDFEVVEAISDDVSVCRTVTPSAAMKIISPRDFVDVVLVKRYEDGT 126 (208)
T ss_pred EEEEEEEecCCHHHHHHHHHhccchhhhhhhhccccEEEEEEecCCEEEEEEecchhcCCCcCCCceEEEEEEEecCCce
Confidence 3889999999999999999999887 999999999999998765544344422221 1 2 233444333322 223
Q ss_pred EE--EEeccc-------ccc---cc-eeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHHHHhhh
Q 026904 171 VK--TTASDS-------SLF---DH-LINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHLVFHIM 227 (231)
Q Consensus 171 I~--~~~~es-------g~F---k~-L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~v~~~M 227 (231)
+. +.+.++ |-. .+ ..+.|+..|. ++++|+|++.+..+++.-|+..+++.+ +++.|
T Consensus 127 i~i~~~sv~h~~~P~~~~~VR~~~~~~g~~~~~~~~-~~~~t~v~~~~~~DpkG~iP~~lvn~~-~~~~~ 194 (208)
T cd08903 127 ISSNATNVEHPLCPPQAGFVRGFNHPCGCFCEPVPG-EPDKTQLVSFFQTDLSGYLPQTVVDSF-FPASM 194 (208)
T ss_pred EEEeEEeccCCCCCCCCCeEEEeeeccEEEEEECCC-CCCceEEEEEEEeccCCCcCHHHHHHH-hhHHH
Confidence 32 223222 222 22 4566766665 357899999999999999999999988 44444
No 35
>cd08911 START_STARD7-like Lipid-binding START domain of mammalian STARD7 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD7 (also known as gestational trophoblastic tumor 1/GTT1). It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be involved in the intracellular trafficking of phosphatidycholine (PtdCho) to mitochondria. STARD7 was shown to be surface active and to interact differentially with phospholipid monolayers, it showed a preference for phosphatidylserine, cholesterol, and phosphatidylglycerol.
Probab=98.45 E-value=8.8e-06 Score=70.29 Aligned_cols=127 Identities=9% Similarity=0.062 Sum_probs=90.9
Q ss_pred cccEEEEEEEE-cCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCC-CeEEEEEEEcccC-e-EEEEEEE--EEecCCC
Q 026904 96 LSKVYEERRVL-GYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPD-GSFDAELEIGFKF-L-VESYVSH--VELNRPK 169 (231)
Q Consensus 96 ~m~~~~~s~~I-~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~-g~~~Ael~Vgf~g-~-~e~ytSr--v~~d~p~ 169 (231)
....++...++ +++++++++++.|++.+++|.+.|.+.+++++.++ +....-+.+.+.. + ...|+.+ ...++.+
T Consensus 43 ~~~~~k~~~~~~d~s~~~~~~~~~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 122 (207)
T cd08911 43 GLYEYKVYGSFDDVTARDFLNVQLDLEYRKKWDATAVELEVVDEDPETGSEIIYWEMQWPKPFANRDYVYVRRYIIDEEN 122 (207)
T ss_pred CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHhhheeEEEEEccCCCCCEEEEEEEECCCCCCCccEEEEEEEEEcCCC
Confidence 34578887766 89999999999999999999999999999998533 4444566666552 2 2334433 3334333
Q ss_pred -e--EEEEeccc-------cc--ccceeeEEEEeeCC--CCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 170 -F--VKTTASDS-------SL--FDHLINIWEFNPGP--SPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 170 -r--I~~~~~es-------g~--Fk~L~G~W~f~p~~--~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
. |...++++ |. ...+.|.|.++|.. ++++|++.|...-+.+..|+..++|.++
T Consensus 123 ~~~~i~~~sv~hp~~P~~~g~VRv~~~~~~~~i~p~~~~~~~~~~~~~~~~~dPgG~IP~~lvN~~~ 189 (207)
T cd08911 123 KLIVIVSKAVQHPSYPESPKKVRVEDYWSYMVIRPHKSFDEPGFEFVLTYFDNPGVNIPSYITSWVA 189 (207)
T ss_pred CEEEEEEecCCCCCCCCCCCCEEEEEeEEEEEEEeCCCCCCCCeEEEEEEEeCCCCccCHHHHHHHH
Confidence 2 23323221 11 24468999999973 2468999999999999999999999987
No 36
>cd08870 START_STARD2_7-like Lipid-binding START domain of mammalian STARD2, -7, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP), and STARD7 (also known as gestational trophoblastic tumor 1/GTT1). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may also have a mitochondrial function. The gene encoding STARD7 is overexpressed in choriocarcinoma. STARD7 appears to be invo
Probab=98.44 E-value=8.4e-06 Score=70.27 Aligned_cols=127 Identities=15% Similarity=0.052 Sum_probs=93.1
Q ss_pred cccEEEEEEEE-cCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCC-CeEEEEEEEcccC--eEEEEEEEEEe-cC-CC
Q 026904 96 LSKVYEERRVL-GYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPD-GSFDAELEIGFKF--LVESYVSHVEL-NR-PK 169 (231)
Q Consensus 96 ~m~~~~~s~~I-~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~-g~~~Ael~Vgf~g--~~e~ytSrv~~-d~-p~ 169 (231)
.+..+....++ +++++++++++.|.+.+++|.+.|.+.++++.+++ +.....+.+.+.- -...|+....+ .. .+
T Consensus 48 ~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~~~~le~~~~~~~~i~y~~~~~P~P~s~RD~V~~r~~~~~~~~ 127 (209)
T cd08870 48 GLYEYLVRGVFEDCTPELLRDFYWDDEYRKKWDETVIEHETLEEDEKSGTEIVRWVKKFPFPLSDREYVIARRLWESDDR 127 (209)
T ss_pred CceEEEEEEEEcCCCHHHHHHHHcChhhHhhhhhheeeEEEEEecCCCCcEEEEEEEECCCcCCCceEEEEEEEEEcCCC
Confidence 35678889989 56999999999999999999999999999999764 3445566666552 24445544332 21 23
Q ss_pred --eEEEEeccc------cc--ccceeeEEEEeeCC-CCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 170 --FVKTTASDS------SL--FDHLINIWEFNPGP-SPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 170 --rI~~~~~es------g~--Fk~L~G~W~f~p~~-~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
.|.....+. |. .+.+.+.|.++|.+ ++++|++++...-+.+..|++.++|.++
T Consensus 128 ~~~i~~~sv~~~~~P~~~~vRv~~~~~~~~i~p~~~~~~~t~~~~~~~~dp~G~IP~wlvN~~~ 191 (209)
T cd08870 128 SYVCVTKGVPYPSVPRSGRKRVDDYESSLVIRAVKGDGQGSACEVTYFHNPDGGIPRELAKLAV 191 (209)
T ss_pred EEEEEEeCCcCCCCCCCCcEEEEEEEeEEEEEEecCCCCceEEEEEEEECCCCCCCHHHHHHHH
Confidence 233333222 11 35578999999972 2478999999999999999999999987
No 37
>cd00177 START Lipid-binding START domain of mammalian STARD1-STARD15 and related proteins. This family includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, and related domains, such as the START domain of the Arabidopsis homeobox protein GLABRA 2. The mammalian STARDs are grouped into 8 subfamilies. This family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. For some members of this family, specific lipids that bind in this pocket are known; these include cholesterol (STARD1/STARD3/ STARD4/STARD5), 25-hydroxycholesterol (STARD5), phosphatidylcholine (STARD2/ STARD7/STARD10), phosphatidylethanolamine (STARD10) and ceramides (STARD11). The START domain is found either alone or in association with other domains. Mammalian STARDs participate in the control of various cellular pro
Probab=98.41 E-value=2.1e-05 Score=64.49 Aligned_cols=126 Identities=13% Similarity=0.198 Sum_probs=88.8
Q ss_pred cccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccC-e-EEEEE-EEEE-ecCCCe-
Q 026904 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKF-L-VESYV-SHVE-LNRPKF- 170 (231)
Q Consensus 96 ~m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g-~-~e~yt-Srv~-~d~p~r- 170 (231)
.+..+....+++++++++++++.|++.+++|.|.|.+++|+++.+++............ + ...|. .+.. .+.++.
T Consensus 37 ~~~~~k~~~~i~~~~~~v~~~l~d~~~~~~w~~~~~~~~vl~~~~~~~~i~~~~~~~p~p~~~Rdfv~~~~~~~~~~~~~ 116 (193)
T cd00177 37 GLKLLKAEGVIPASPEQVFELLMDIDLRKKWDKNFEEFEVIEEIDEHTDIIYYKTKPPWPVSPRDFVYLRRRRKLDDGTY 116 (193)
T ss_pred CceeEEEEEEECCCHHHHHHHHhCCchhhchhhcceEEEEEEEeCCCeEEEEEEeeCCCccCCccEEEEEEEEEcCCCeE
Confidence 45789999999999999999999999999999999999999997654433333333332 2 11222 1111 122232
Q ss_pred -EEEEeccc-------ccc--cceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 171 -VKTTASDS-------SLF--DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 171 -I~~~~~es-------g~F--k~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
+...+.+. +.. ....+.|.++|.+ ++.|+|++....+++..++..+++.++
T Consensus 117 ~~~~~Si~~~~~p~~~~~vR~~~~~~~~~i~~~~-~~~~~vt~~~~~D~~g~iP~~~~~~~~ 177 (193)
T cd00177 117 VIVSKSVDHDSHPKEKGYVRAEIKLSGWIIEPLD-PGKTKVTYVLQVDPKGSIPKSLVNSAA 177 (193)
T ss_pred EEEEeecCCCCCCCCCCcEEEEEEccEEEEEECC-CCCEEEEEEEeeCCCCCccHHHHHhhh
Confidence 22333332 111 1235789999994 689999999999999999999999886
No 38
>cd08908 START_STARD12-like C-terminal lipid-binding START domain of mammalian STARD12 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subgroup also have an N-terminal SAM (sterile alpha motif) domain and a RhoGAP domain, and have a SAM-RhoGAP-START domain organization. The precise function of the START domain in this subgroup is unclear.
Probab=98.40 E-value=6.1e-06 Score=71.89 Aligned_cols=125 Identities=10% Similarity=0.060 Sum_probs=89.4
Q ss_pred ccccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEccc--CeEEEEEEEEEe--c-CCC
Q 026904 95 VLSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK--FLVESYVSHVEL--N-RPK 169 (231)
Q Consensus 95 ~~m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~--g~~e~ytSrv~~--d-~p~ 169 (231)
+.++.++.+..++++++++.+++.|. +++|.+.|.+++++++-++........+... .-...|+.+..+ + +.+
T Consensus 49 s~l~~~r~~~~i~a~~~~vl~~lld~--~~~Wd~~~~e~~vIe~ld~~~~I~Yy~~~~PwP~~~RD~V~~Rs~~~~~~~g 126 (204)
T cd08908 49 PPLRLWRTTIEVPAAPEEILKRLLKE--QHLWDVDLLDSKVIEILDSQTEIYQYVQNSMAPHPARDYVVLRTWRTNLPKG 126 (204)
T ss_pred CCcEEEEEEEEeCCCHHHHHHHHHhh--HHHHHHHhhheEeeEecCCCceEEEEEccCCCCCCCcEEEEEEEEEEeCCCC
Confidence 47889999999999999999999988 9999999999999998754433333333322 223344433222 1 122
Q ss_pred --eEEEEeccc------c-cccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 170 --FVKTTASDS------S-LFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 170 --rI~~~~~es------g-~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
.|...+.+. + ....+.|.|.++|.+ +++|+|+|....+++.-++.+++|.+.
T Consensus 127 ~~~I~~~Sv~h~~~P~~~VR~~~~~~~w~i~P~g-~g~t~vtyi~~~DPgG~iP~W~~N~~g 187 (204)
T cd08908 127 ACALLATSVDHDRAPVAGVRVNVLLSRYLIEPCG-SGKSKLTYMCRIDLRGHMPEWYTKSFG 187 (204)
T ss_pred eEEEEEeecCcccCCcCceEEEEEeeEEEEEECC-CCcEEEEEEEEeCCCCCCcHHHHhhHH
Confidence 223331111 1 124578999999984 589999999999999999999999875
No 39
>cd08869 START_RhoGAP C-terminal lipid-binding START domain of mammalian STARD8, -12, -13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38), STARD12 (also known as DLC-1, Arhgap7, and p122-RhoGAP), and STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. Some, including STARD12, -and -13, also have an N-terminal SAM (sterile alpha motif) domain; these have a SAM-RhoGAP-START domain organization. This subfamily is involved in cancer development. A large spectrum of cancers have dysregul
Probab=98.40 E-value=9.5e-06 Score=69.56 Aligned_cols=124 Identities=9% Similarity=0.039 Sum_probs=89.8
Q ss_pred cccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcc--cCeEEEEEEEEEec--CCC--
Q 026904 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGF--KFLVESYVSHVELN--RPK-- 169 (231)
Q Consensus 96 ~m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf--~g~~e~ytSrv~~d--~p~-- 169 (231)
.++.++.+..+++++++|++++.|.. ++|.+.|.+++++++-+++.......+.. ..-...|+....+. .++
T Consensus 42 ~l~~~K~~~~v~a~~~~v~~~l~d~r--~~Wd~~~~~~~vie~id~~~~i~y~~~~~p~pv~~RDfV~~r~~~~~~~~g~ 119 (197)
T cd08869 42 PLRLWRASTEVEAPPEEVLQRILRER--HLWDDDLLQWKVVETLDEDTEVYQYVTNSMAPHPTRDYVVLRTWRTDLPKGA 119 (197)
T ss_pred cEEEEEEEEEeCCCHHHHHHHHHHHH--hccchhhheEEEEEEecCCcEEEEEEeeCCCCCCCceEEEEEEEEecCCCCc
Confidence 57889999999999999999998863 99999999999999876544333333322 22344555443222 222
Q ss_pred -eEEEEeccc------cc--ccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 170 -FVKTTASDS------SL--FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 170 -rI~~~~~es------g~--Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
.|...+++. |- ...+.|.|.++|.+ +++|+|+|.+..+++.-++++++|.+-
T Consensus 120 ~~i~~~Sv~~~~~~p~g~VR~~~~~~g~~i~p~~-~~~t~vty~~~~Dp~G~iP~wl~N~~~ 180 (197)
T cd08869 120 CVLVETSVEHTEPVPLGGVRAVVLASRYLIEPCG-SGKSRVTHICRVDLRGRSPEWYNKVYG 180 (197)
T ss_pred EEEEEECCcCCCCCCCCCEEEEEEeeeEEEEECC-CCCeEEEEEEEECCCCCCCceeecchH
Confidence 345555532 11 24467999999984 688999999999999999999988776
No 40
>cd08868 START_STARD1_3_like Cholesterol-binding START domain of mammalian STARD1, -3 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD1 (also known as StAR) and STARD3 (also known as metastatic lymph node 64/MLN64). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. This STARD1-like subfamily has a high affinity for cholesterol. STARD1/StAR can reduce macrophage lipid content and inflammatory status. It plays an essential role in steroidogenic tissues: transferring the steroid precursor, cholesterol, from the outer to the inner mitochondrial membrane, across the aqueous space. Mutations in the gene encoding STARD1/StAR can cause lipid congenital adrenal hyperplasia (CAH), an autosomal recessive disorder characterized by a steroid synth
Probab=98.38 E-value=7.7e-06 Score=70.19 Aligned_cols=125 Identities=18% Similarity=0.250 Sum_probs=84.4
Q ss_pred cEEEEEEEEcCCHHHHHH-HHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcc---cCe-EEEEEEEEEecC-CC--
Q 026904 98 KVYEERRVLGYSPEQLFD-VVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGF---KFL-VESYVSHVELNR-PK-- 169 (231)
Q Consensus 98 ~~~~~s~~I~appeqVyd-LVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf---~g~-~e~ytSrv~~d~-p~-- 169 (231)
+.++.+.+++++++++|+ ++.|++.+++|.+.|.+++++++-+++.......... ..+ ...|.....+.. ++
T Consensus 48 ~~~k~~~~i~~~~~~v~~~l~~d~~~~~~Wd~~~~~~~~i~~~d~~~~i~y~~~~~~~~~~vs~RDfV~~r~~~~~~~~~ 127 (208)
T cd08868 48 KVFRLTGVLDCPAEFLYNELVLNVESLPSWNPTVLECKIIQVIDDNTDISYQVAAEAGGGLVSPRDFVSLRHWGIRENCY 127 (208)
T ss_pred eEEEEEEEEcCCHHHHHHHHHcCccccceecCcccceEEEEEecCCcEEEEEEecCcCCCcccccceEEEEEEEecCCeE
Confidence 568888999999999986 6779999999999999999999875443222211211 111 233333322211 22
Q ss_pred eEEEEeccc-------cc--ccceeeEEEEeeCCC-CCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 170 FVKTTASDS-------SL--FDHLINIWEFNPGPS-PGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 170 rI~~~~~es-------g~--Fk~L~G~W~f~p~~~-~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
.|...+.+. |- -....|.|.|+|.++ ++.|+|++.+..+++.-++.++++.++
T Consensus 128 ~i~~~sv~h~~~P~~~g~VR~~~~~~~~~i~p~~~~~~~t~v~~~~~~Dp~G~iP~~lvN~~~ 190 (208)
T cd08868 128 LSSGVSVEHPAMPPTKNYVRGENGPGCWILRPLPNNPNKCNFTWLLNTDLKGWLPQYLVDQAL 190 (208)
T ss_pred EEEEEeccCCCCCCCCCeEEEeccccEEEEEECCCCCCceEEEEEEEECCCCCCcceeeehhh
Confidence 222333221 11 133569999999852 357999999999999999999999885
No 41
>cd08871 START_STARD10-like Lipid-binding START domain of mammalian STARD10 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD10 (also known as CGI-52, PTCP-like, and SDCCAG28). The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD10 binds phophatidylcholine and phosphatidylethanolamine. This protein is widely expressed and is synthesized constitutively in many organs. It may function in the liver in the export of phospholipids into bile. It is concentrated in the sperm flagellum, and may play a role in energy metabolism. In the mammary gland it may participate in the enrichment of lipids in milk, and be a potential marker of differentiation. Its expression is induced in this gland during gestation and lactation. It is overe
Probab=98.37 E-value=1.8e-05 Score=68.60 Aligned_cols=126 Identities=11% Similarity=0.064 Sum_probs=87.8
Q ss_pred cccEEEEEEEE-cCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEccc--CeEEEEEEEEEe-cCCCe-
Q 026904 96 LSKVYEERRVL-GYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK--FLVESYVSHVEL-NRPKF- 170 (231)
Q Consensus 96 ~m~~~~~s~~I-~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~--g~~e~ytSrv~~-d~p~r- 170 (231)
.+..++.+.++ +++++++++++.|.+.+++|.+.|.+++++++-+++.........+. .-...|.....+ ..++.
T Consensus 45 ~~~~~k~~~~~~~~s~e~~~~~l~D~~~r~~Wd~~~~e~~~ie~~d~~~~i~y~~~~~P~pvs~RDfV~~r~~~~~~~~~ 124 (222)
T cd08871 45 SIKMIKVSAIFPDVPAETLYDVLHDPEYRKTWDSNMIESFDICQLNPNNDIGYYSAKCPKPLKNRDFVNLRSWLEFGGEY 124 (222)
T ss_pred ceEEEEEEEEeCCCCHHHHHHHHHChhhhhhhhhhhceeEEEEEcCCCCEEEEEEeECCCCCCCCeEEEEEEEEeCCCEE
Confidence 56678888877 59999999999999999999999999999998654433333333322 122334333222 22232
Q ss_pred -EEEEeccc-------ccc--cceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 171 -VKTTASDS-------SLF--DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 171 -I~~~~~es-------g~F--k~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
|...+.+. |-. +...+.|.++|.+ +++|+|++....+++..++..+++.++
T Consensus 125 vi~~~sv~~~~~P~~~g~VR~~~~~~g~~i~p~~-~~~t~vt~~~~~Dp~G~IP~~lvN~~~ 185 (222)
T cd08871 125 IIFNHSVKHKKYPPRKGFVRAISLLTGYLIRPTG-PKGCTLTYVTQNDPKGSLPKWVVNKAT 185 (222)
T ss_pred EEEeccccCCCCCCCCCeEEeEEEccEEEEEECC-CCCEEEEEEEecCCCCCcCHHHHHHHH
Confidence 22222211 111 2356889999984 678999999999999999999999987
No 42
>cd08914 START_STARD15-like Lipid-binding START domain of mammalian STARD15 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD15/ACOT12 (also known as cytoplasmic acetyl-CoA hydrolase/CACH, THEAL, and MGC105114) and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD15/ACOT12 is a type II acetyl-CoA thioesterase; it catalyzes the hydrolysis of acyl-CoAs to free fatty acid and CoASH. Rat CACH hydrolyzes acetyl-CoA to acetate and CoA. In addition to having a START domain, most proteins in this subgroup have two tandem copies of the hotdog domain. Human STARD15/ACOT12 may have roles in cholesterol metabolism and in beta-oxidation.
Probab=98.32 E-value=5.8e-06 Score=73.65 Aligned_cols=120 Identities=7% Similarity=-0.079 Sum_probs=82.8
Q ss_pred cccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEccc---CeEEEEEEEEEe---cCCC
Q 026904 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK---FLVESYVSHVEL---NRPK 169 (231)
Q Consensus 96 ~m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~---g~~e~ytSrv~~---d~p~ 169 (231)
.+..++.+..+++|++++|+|+.|++.+|+|.+.|.+++++++.+++.. ........ .-...++.+..+ .+.+
T Consensus 76 ~~l~fk~e~~vdvs~~~l~~LL~D~~~r~~Wd~~~~e~~vI~qld~~~~-vY~~~~pPw~Pvk~RD~V~~~s~~~~~~dg 154 (236)
T cd08914 76 DVLSVWVEKHVKRPAHLAYRLLSDFTKRPLWDPHFLSCEVIDWVSEDDQ-IYHITCPIVNNDKPKDLVVLVSRRKPLKDG 154 (236)
T ss_pred CcEEEEEEEEEcCCHHHHHHHHhChhhhchhHHhhceEEEEEEeCCCcC-EEEEecCCCCCCCCceEEEEEEEEecCCCC
Confidence 4568899999999999999999999999999999999999998654332 23333332 223456555443 2122
Q ss_pred ---eEEEEeccc-------cc--ccc-eeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHH
Q 026904 170 ---FVKTTASDS-------SL--FDH-LINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMV 219 (231)
Q Consensus 170 ---rI~~~~~es-------g~--Fk~-L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~ 219 (231)
.|...++++ |- .+. +.|. .++|.+ +++|+|+|.+..+. .-|+-++.|
T Consensus 155 ~~~~I~~~SVp~~~~Pp~kg~VRv~~~~~G~-~I~pl~-~~~~~VtY~~~~dP-g~lp~~~~n 214 (236)
T cd08914 155 NTYVVAVKSVILPSVPPSPQYIRSEIICAGF-LIHAID-SNSCTVSYFNQISA-SILPYFAGN 214 (236)
T ss_pred CEEEEEEeecccccCCCCCCcEEeEEEEEEE-EEEEcC-CCcEEEEEEEEcCC-ccchheEEe
Confidence 233444332 11 134 6675 999984 68999999999998 666655444
No 43
>COG3427 Carbon monoxide dehydrogenase subunit G, CoxG [Energy production and conversion]
Probab=98.31 E-value=2.8e-05 Score=64.65 Aligned_cols=125 Identities=15% Similarity=0.228 Sum_probs=95.0
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEecC----CCeEEEE
Q 026904 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNR----PKFVKTT 174 (231)
Q Consensus 99 ~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~d~----p~rI~~~ 174 (231)
.|+.+..|++||++||+.+.|-|..-+=+|.|++.+ ..++ ++.+.+.+..+.++.+|..++.+.. |+++.+.
T Consensus 2 ~~~G~f~V~~p~e~Vw~~L~dpe~~a~ciPG~qs~e---~~g~-e~~~~v~l~ig~l~~~~~g~~~~~~v~~~~~~~~i~ 77 (146)
T COG3427 2 DYEGTFRVAAPPEAVWEFLNDPEQVAACIPGVQSVE---TNGD-EYTAKVKLKIGPLKGTFSGRVRFVNVDEPPRSITIN 77 (146)
T ss_pred cccceEEecCCHHHHHHHhcCHHHHHhhcCCcceee---ecCC-eEEEEEEEeecceeEEEEEEEEEccccCCCcEEEEE
Confidence 467788899999999999999999999999999854 3333 6899999999999999999988744 3466665
Q ss_pred ecc--cccccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH--HHhhhhhc
Q 026904 175 ASD--SSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL--VFHIMLCQ 230 (231)
Q Consensus 175 ~~e--sg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~--v~~~Mi~~ 230 (231)
-.- .+-|-.....-.++|.. ++|+|.+..+-+.+.+ +.+|-+... ++.+||+.
T Consensus 78 g~G~~~~g~~~~~~~v~l~~~g--~gt~v~w~~~~~~gg~-laqlGsr~i~~~~~kli~~ 134 (146)
T COG3427 78 GSGGGAAGFADGTVDVQLEPSG--EGTRVNWFADANVGGK-LAQLGSRLIDSVARKLINR 134 (146)
T ss_pred eecccccceeeeeeEEEEEEcC--CCcEEEEEEEccccHH-HHHHhHHHHHHHHHHHHHH
Confidence 522 12455566777788873 4599999999998854 444444444 77777764
No 44
>smart00234 START in StAR and phosphatidylcholine transfer protein. putative lipid-binding domain in StAR and phosphatidylcholine transfer protein
Probab=98.24 E-value=5.7e-05 Score=63.75 Aligned_cols=126 Identities=9% Similarity=0.002 Sum_probs=88.5
Q ss_pred cccEEEEEEEEcCCHHH-HHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEccc--Ce-EEEEEEEEEe--cCCC
Q 026904 96 LSKVYEERRVLGYSPEQ-LFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK--FL-VESYVSHVEL--NRPK 169 (231)
Q Consensus 96 ~m~~~~~s~~I~appeq-VydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~--g~-~e~ytSrv~~--d~p~ 169 (231)
.+..++...++++++++ +.+++.|.+.+++|.+.|.++++++..+++........... ++ ...|.....+ +..+
T Consensus 43 ~~~~~k~~~~v~~~~~~~~~~~~~d~~~r~~Wd~~~~~~~~ie~~~~~~~i~~~~~~~~~~p~~~RDfv~~r~~~~~~~~ 122 (206)
T smart00234 43 PGEASRAVGVVPMVCADLVEELMDDLRYRPEWDKNVAKAETLEVIDNGTVIYHYVSKFVAGPVSPRDFVFVRYWRELVDG 122 (206)
T ss_pred ceEEEEEEEEEecChHHHHHHHHhcccchhhCchhcccEEEEEEECCCCeEEEEEEecccCcCCCCeEEEEEEEEEcCCC
Confidence 46789999999999997 77899999999999999999999998755442333332222 22 2233322222 2233
Q ss_pred --eEEEEeccccc-------c--cceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 170 --FVKTTASDSSL-------F--DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 170 --rI~~~~~esg~-------F--k~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
.|...+.+..- . ..+.+.|.++|.+ ++.|+|++....+++..++..+++.++
T Consensus 123 ~~vi~~~Sv~~~~~p~~~~~VR~~~~~~~~~i~p~~-~~~t~vt~~~~~D~~G~iP~~lvn~~~ 185 (206)
T smart00234 123 SYAVVDVSVTHPTSPPTSGYVRAENLPSGLLIEPLG-NGPSKVTWVSHADLKGWLPHWLVRSLI 185 (206)
T ss_pred cEEEEEEECCCCCCCCCCCceEEEEeceEEEEEECC-CCCeEEEEEEEEecCCCccceeehhhh
Confidence 23333332211 1 3467899999985 567999999999999999999999987
No 45
>cd08899 SRPBCC_CalC_Aha1-like_6 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.16 E-value=2.9e-05 Score=63.63 Aligned_cols=103 Identities=9% Similarity=0.015 Sum_probs=69.7
Q ss_pred cEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEE-EEEEecCCCeEEEEec
Q 026904 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYV-SHVELNRPKFVKTTAS 176 (231)
Q Consensus 98 ~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~yt-Srv~~d~p~rI~~~~~ 176 (231)
..+..++.|++|+++||+++.|.++|++|.|.+ . .+...++.++. ..+-.+ ...+. ....+++++++.++..
T Consensus 11 ~~i~~~~~i~Ap~e~Vw~altdp~~~~~W~~~~-~---~~~~~G~~~~~--~~~~~~-~~~~~~~v~e~~p~~~l~~~~~ 83 (157)
T cd08899 11 ATLRFERLLPAPIEDVWAALTDPERLARWFAPG-T---GDLRVGGRVEF--VMDDEE-GPNATGTILACEPPRLLAFTWG 83 (157)
T ss_pred eEEEEEEecCCCHHHHHHHHcCHHHHHhhcCCC-C---CCcccCceEEE--EecCCC-CCccceEEEEEcCCcEEEEEec
Confidence 579999999999999999999999999999932 1 22222233322 222111 11222 3345677888888875
Q ss_pred ccccccceeeEEEEeeCCCCCceEEEEEEEEEeCC
Q 026904 177 DSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHS 211 (231)
Q Consensus 177 esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~s 211 (231)
. +. ......|+|++.+ ++|+|++..++....
T Consensus 84 ~-~~-~~~~~~~~l~~~~--~gT~v~~~~~~~~~~ 114 (157)
T cd08899 84 E-GG-GESEVRFELAPEG--DGTRLTLTHRLLDER 114 (157)
T ss_pred C-CC-CCceEEEEEEEcC--CCEEEEEEEeccCch
Confidence 4 33 3456788899873 679999999886555
No 46
>cd08867 START_STARD4_5_6-like Lipid-binding START domain of mammalian STARD4, -5, -6, and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4, -5, and -6. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7a-hydroxycholesterol. STARD4 and STARD5 are ubiquitously expressed, with highest levels in liver and kidney. STRAD5 functions in the kidney within the proximal tubule cells where it is associated with the Endoplasmic Reticulum (ER), and may participate in ER-associated cholesterol transport. It binds cholesterol and 25-hydroxycholesterol. Expression
Probab=98.16 E-value=0.0001 Score=63.14 Aligned_cols=125 Identities=12% Similarity=0.108 Sum_probs=84.6
Q ss_pred cEEEEEEEEcCCHHHHHHHHHc--hhcccCCCCCcceEEEEEeCCCCeEEEEEEEccc--C-e-EEEEEEE---EEecCC
Q 026904 98 KVYEERRVLGYSPEQLFDVVAA--VDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK--F-L-VESYVSH---VELNRP 168 (231)
Q Consensus 98 ~~~~~s~~I~appeqVydLVaD--Ve~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~--g-~-~e~ytSr---v~~d~p 168 (231)
+.++.+..++++++++++++.| .+..++|.+.|.+++++++-+++........... + + ...|... ..++..
T Consensus 46 ~~~k~~~~i~~~~~~v~~~l~d~~~~~r~~Wd~~~~~~~~le~id~~~~i~~~~~p~~~~~~vs~RDfV~~~~~~~~~~~ 125 (206)
T cd08867 46 HLYRAEGIVDALPEKVIDVIIPPCGGLRLKWDKSLKHYEVLEKISEDLCVGRTITPSAAMGLISPRDFVDLVYVKRYEDN 125 (206)
T ss_pred EEEEEEEEEcCCHHHHHHHHHhcCccccccccccccceEEEEEeCCCeEEEEEEccccccCccCCcceEEEEEEEEeCCC
Confidence 6789999999999999999999 8999999999999999998764443333322111 1 1 1223211 111111
Q ss_pred C-eEEEEeccc-------ccc--cceeeEEEEeeCC-CCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 169 K-FVKTTASDS-------SLF--DHLINIWEFNPGP-SPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 169 ~-rI~~~~~es-------g~F--k~L~G~W~f~p~~-~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
. .+...+++. |-. ....|.|.++|.+ +++.|++++.+..+++..++..++++++
T Consensus 126 ~~~i~~~Sv~hp~~p~~~~~VR~~~~~~g~~i~p~~~~~~~t~~~~~~~~DpkG~iP~~lvn~~~ 190 (206)
T cd08867 126 QWSSSGKSVDIPERPPTPGFVRGYNHPCGYFCSPLKGSPDKSFLVLYVQTDLRGMIPQSLVESAM 190 (206)
T ss_pred eEEEEEEeccCCCCCCCCCcEEEEeecCEEEEEECCCCCCceEEEEEEEeccCCCCcHHHHHhhh
Confidence 1 122233211 111 2356889999864 2467999999999999999999999884
No 47
>cd08898 SRPBCC_CalC_Aha1-like_5 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=98.12 E-value=7.3e-05 Score=58.84 Aligned_cols=100 Identities=9% Similarity=0.077 Sum_probs=63.8
Q ss_pred EEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeE-EEEE-EEEEecCCCeEEEEec
Q 026904 99 VYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLV-ESYV-SHVELNRPKFVKTTAS 176 (231)
Q Consensus 99 ~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~-e~yt-Srv~~d~p~rI~~~~~ 176 (231)
+++.++.|++|+++||+++.|.++|++|.|... .. .+..+ .....+. +.+.. ..+. ....++|++++.+...
T Consensus 2 ~i~~~i~i~a~~e~Vw~~~td~~~~~~W~~~~~-~~-~~~~~--~~~g~~~--~~~~~~~~~~~~i~~~~p~~~l~~~~~ 75 (145)
T cd08898 2 RIERTILIDAPRERVWRALTDPEHFGQWFGVKL-GP-FVVGE--GATGEIT--YPGYEHGVFPVTVVEVDPPRRFSFRWH 75 (145)
T ss_pred eeEEEEEecCCHHHHHHHhcChhhhhhcccccC-CC-cccCC--cceeEEe--cCCCCccceEEEEEEeCCCcEEEEEec
Confidence 578999999999999999999999999999753 10 11111 1112222 22211 2233 3455677888888763
Q ss_pred ccc-----c---ccceeeEEEEeeCCCCCceEEEEEEE
Q 026904 177 DSS-----L---FDHLINIWEFNPGPSPGTCNLYFLVD 206 (231)
Q Consensus 177 esg-----~---Fk~L~G~W~f~p~~~~~~T~V~f~ld 206 (231)
... + -......|+|++.+ ++|+|++...
T Consensus 76 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~gT~vt~~~~ 111 (145)
T cd08898 76 PPAIDPGEDYSAEPSTLVEFTLEPIA--GGTLLTVTES 111 (145)
T ss_pred CCCcccccccCCCCceEEEEEEEecC--CcEEEEEEEc
Confidence 221 0 11235789999973 6799999986
No 48
>cd08893 SRPBCC_CalC_Aha1-like_GntR-HTH Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins; some contain an N-terminal GntR family winged HTH DNA-binding domain. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. Some proteins in this subgroup contain an N-terminal winged helix-turn-helix DNA-binding domain found in the GntR family of proteins which include bacterial transcriptional regulators and their putative homologs from eukaryota and archaea.
Probab=98.10 E-value=7.8e-05 Score=57.92 Aligned_cols=106 Identities=11% Similarity=0.014 Sum_probs=67.0
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEE-EEEecCCCeEEEEeccc
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVS-HVELNRPKFVKTTASDS 178 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytS-rv~~d~p~rI~~~~~es 178 (231)
++.++.|++||++||+++.|.+.|++|.+.+.- ......++.+ .+..+..+. ..... -..+++++++.++....
T Consensus 2 ~~~~~~i~ap~e~Vw~~~td~~~~~~W~~~~~~--~~~~~~G~~~--~~~~~~~~~-~~~~~~v~~~~~~~~l~~~~~~~ 76 (136)
T cd08893 2 FVYVTYIRATPEKVWQALTDPEFTRQYWGGTTV--ESDWKVGSAF--EYRRGDDGT-VDVEGEVLESDPPRRLVHTWRAV 76 (136)
T ss_pred eEEEEEecCCHHHHHHHHcCchhhhheeccccc--ccCCcCCCeE--EEEeCCCcc-cccceEEEEecCCCeEEEEEecC
Confidence 567899999999999999999999999987331 1111222333 233322111 11222 33467888887776421
Q ss_pred c-----cccceeeEEEEeeCCCCCceEEEEEEEEEeCCh
Q 026904 179 S-----LFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSP 212 (231)
Q Consensus 179 g-----~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~sp 212 (231)
+ .-....-+|.|++.+ ++|+|++..+.....+
T Consensus 77 ~~~~~~~~~~~~v~~~l~~~~--~~t~l~~~~~~~~~~~ 113 (136)
T cd08893 77 WDPEMAAEPPSRVTFEIEPVG--DVVKLTVTHDGFPPGS 113 (136)
T ss_pred CCcccCCCCCEEEEEEEEecC--CcEEEEEEecCCCCch
Confidence 1 123567789999973 6799999987655443
No 49
>cd08910 START_STARD2-like Lipid-binding START domain of mammalian STARD2 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD2 (also known as phosphatidylcholine transfer protein/PC-TP) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD2 is a cytosolic phosphatidycholine (PtdCho) transfer protein, which traffics PtdCho, the most common class of phospholipids in eukaryotes, between membranes. It represents a minimal START domain structure. STARD2 plays roles in hepatic cholesterol metabolism, in the development of atherosclerosis, and may have a mitochondrial function.
Probab=98.09 E-value=4.7e-05 Score=65.91 Aligned_cols=124 Identities=13% Similarity=0.116 Sum_probs=85.1
Q ss_pred cccEEEEEEEEc-CCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccC-e-EEEEEEE---EEecCCC
Q 026904 96 LSKVYEERRVLG-YSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKF-L-VESYVSH---VELNRPK 169 (231)
Q Consensus 96 ~m~~~~~s~~I~-appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g-~-~e~ytSr---v~~d~p~ 169 (231)
.+..++....++ ++++++++++.|++.+++|.+.|.+ +++...++.....+.+.+.- + ...|+.. ...+.+.
T Consensus 47 ~~~~~k~~~~~~~~s~~~~~~~l~D~~~r~~Wd~~~~~--~~~~~~~~~~i~y~~~k~PwPvs~RD~V~~r~~~~~~~~~ 124 (207)
T cd08910 47 GLYEYKVFGVLEDCSPSLLADVYMDLEYRKQWDQYVKE--LYEKECDGETVIYWEVKYPFPLSNRDYVYIRQRRDLDVEG 124 (207)
T ss_pred CcEEEEEEEEEcCCCHHHHHHHHhCHHHHHHHHHHHHh--heeecCCCCEEEEEEEEcCCCCCCceEEEEEEeccccCCC
Confidence 456789888998 7999999999999999999999997 55554434434455554432 2 2334322 1122222
Q ss_pred -eEEE---Eeccc-------cc--ccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 170 -FVKT---TASDS-------SL--FDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 170 -rI~~---~~~es-------g~--Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
.+.+ .+.+. |. .....|.|.|+|.+ +++|+++|....+++..++..++|.++
T Consensus 125 ~~~~iv~~~s~~~p~~P~~~~~VRv~~~~~~~~i~p~~-~~~t~i~~~~~~DPgG~IP~wlvN~~~ 189 (207)
T cd08910 125 RKIWVILARSTSLPQLPEKPGVIRVKQYKQSLAIESDG-KKGSKVFMYYFDNPGGMIPSWLINWAA 189 (207)
T ss_pred CeEEEEEecCCCCCCCCCCCCCEEEEEEEEEEEEEeCC-CCceEEEEEEEeCCCCcchHHHHHHHH
Confidence 1211 11111 11 13478999999984 578999999999999999999999997
No 50
>cd08872 START_STARD11-like Ceramide-binding START domain of mammalian STARD11 and related domains. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD11 and related domains. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD11 can mediate transfer of the natural ceramide isomers, dihydroceramide and phytoceramide, as well as ceramides having C14, C16, C18, and C20 chains. They can also transfer diacylglycerol, but with a lower efficiency. STARD11 is synthesized from two major transcripts: a larger one encoding Goodpasture antigen-binding protein (GPBP)/ceramide transporter long form (CERTL); and a smaller one encoding GPBPdelta26/CERT, which is deleted for 26 amino acids. Both splicing variants mediate ceramide transfer from the ER to the Golg
Probab=97.97 E-value=0.00016 Score=64.13 Aligned_cols=124 Identities=5% Similarity=-0.043 Sum_probs=83.6
Q ss_pred ccEEEEEEEEc-CCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEccc--CeEEEEEEEEEe--------
Q 026904 97 SKVYEERRVLG-YSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFK--FLVESYVSHVEL-------- 165 (231)
Q Consensus 97 m~~~~~s~~I~-appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~--g~~e~ytSrv~~-------- 165 (231)
+..++...+++ .+++++++++.|.+.+++|...|.+.+++++.+++.......+... .-...+.....+
T Consensus 51 ~~~~Ka~~~v~~vt~~~~~~~l~D~~~r~~Wd~~~~~~~vie~l~~~~~I~Y~~~k~PwPvs~RD~V~~~~~~~~~d~~~ 130 (235)
T cd08872 51 LDPLKATHAVKGVTGHEVCHYFFDPDVRMDWETTLENFHVVETLSQDTLIFHQTHKRVWPAAQRDALFVSHIRKIPALEE 130 (235)
T ss_pred eeeEEEEEEECCCCHHHHHHHHhChhhHHHHHhhhheeEEEEecCCCCEEEEEEccCCCCCCCcEEEEEEEEEecCcccc
Confidence 44688888999 9999999999999999999999999999998654443333333321 111112111111
Q ss_pred ------------------cCC--CeEEEEec----ccccccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHH
Q 026904 166 ------------------NRP--KFVKTTAS----DSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLH 221 (231)
Q Consensus 166 ------------------d~p--~rI~~~~~----esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~ 221 (231)
.|+ +.|.+... ..+....-.|.|.++|. +++|+|+|....+++.-++..+++.+
T Consensus 131 ~~~~~~~vii~~Sv~h~~~P~~~g~VRv~~~~~~~~~~~i~~~~g~~~~t~~--~~~~~ity~~~~dPgG~iP~wvvn~~ 208 (235)
T cd08872 131 PNAHDTWIVCNFSVDHDSAPLNNKCVRAKLTVAMICQTFVSPPDGNQEITRD--NILCKITYVANVNPGGWAPASVLRAV 208 (235)
T ss_pred ccCCCeEEEEEecccCccCCCCCCeEEEEEEeeeeeeeeeecCCCcccccCC--CCeEEEEEEEEeCCCCCccHHHHHHH
Confidence 011 13333321 11222222377999985 47999999999999999999999998
Q ss_pred H
Q 026904 222 L 222 (231)
Q Consensus 222 ~ 222 (231)
+
T Consensus 209 ~ 209 (235)
T cd08872 209 Y 209 (235)
T ss_pred H
Confidence 7
No 51
>cd08894 SRPBCC_CalC_Aha1-like_1 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.88 E-value=0.00088 Score=53.41 Aligned_cols=102 Identities=13% Similarity=0.123 Sum_probs=65.0
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCC----cceEEEEEeCCCCeEEEEEEEcccCeEEE-EEEEEEecCCCeEEEE
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPW----CQRSEILKHNPDGSFDAELEIGFKFLVES-YVSHVELNRPKFVKTT 174 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~----c~~srVL~r~~~g~~~Ael~Vgf~g~~e~-ytSrv~~d~p~rI~~~ 174 (231)
+..++.+++|+++||+++.|-+...+|++. +...++ +...+|.++..+. +-.|.... .-.-..++||++|.++
T Consensus 2 l~~~r~i~ap~e~Vw~a~t~p~~l~~W~~p~~~~~~~~~~-d~~~GG~~~~~~~-~~~g~~~~~~g~v~e~~p~~~l~~t 79 (139)
T cd08894 2 IVTTRVIDAPRDLVFAAWTDPEHLAQWWGPEGFTNTTHEF-DLRPGGRWRFVMH-GPDGTDYPNRIVFLEIEPPERIVYD 79 (139)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhccCcCCCcceEEEE-EecCCCEEEEEEE-CCCCCEecceEEEEEEcCCCEEEEE
Confidence 567889999999999999999999999752 122222 2223344433332 21232212 2345667888899988
Q ss_pred ecccccccceeeEEEEeeCCCCCceEEEEEEEE
Q 026904 175 ASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDF 207 (231)
Q Consensus 175 ~~esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldF 207 (231)
....++ ...-.|+|+|. +++|+|++...|
T Consensus 80 ~~~~~~--~~~v~~~~~~~--~~gT~ltl~~~~ 108 (139)
T cd08894 80 HGSGPP--RFRLTVTFEEQ--GGKTRLTWRQVF 108 (139)
T ss_pred eccCCC--cEEEEEEEEEC--CCCEEEEEEEEc
Confidence 744321 23467899987 378999999864
No 52
>cd08896 SRPBCC_CalC_Aha1-like_3 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.81 E-value=0.0012 Score=53.12 Aligned_cols=104 Identities=13% Similarity=0.058 Sum_probs=64.4
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCC----cceEEEEEeCCCCeEEEEEEEcccCeEEE-EEEEEEecCCCeEEEE
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPW----CQRSEILKHNPDGSFDAELEIGFKFLVES-YVSHVELNRPKFVKTT 174 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~----c~~srVL~r~~~g~~~Ael~Vgf~g~~e~-ytSrv~~d~p~rI~~~ 174 (231)
+..++.+++|+++||+++.|=+.+.+|.+. |...++--+ .+|.+...+. +-+|.... +-.-..++||+++.++
T Consensus 2 l~i~r~i~a~~e~Vw~a~t~pe~~~~W~~p~~~~~~~~~~d~~-~GG~~~~~~~-~~~g~~~~~~g~v~~i~p~~~l~~t 79 (146)
T cd08896 2 LVLSRTIDAPRELVWRAWTEPELLKQWFCPKPWTTEVAELDLR-PGGAFRTVMR-GPDGEEFPNPGCFLEVVPGERLVFT 79 (146)
T ss_pred eEEEEEeCCCHHHHHHHcCCHHHHhccCCCCCccceEEEEEee-cCcEEEEEEE-CCCCCEecceEEEEEEeCCCEEEEE
Confidence 456789999999999999999999999873 222222223 3344333322 22233222 3345667888888877
Q ss_pred ec--ccc-ccc--ceeeEEEEeeCCCCCceEEEEEEEE
Q 026904 175 AS--DSS-LFD--HLINIWEFNPGPSPGTCNLYFLVDF 207 (231)
Q Consensus 175 ~~--esg-~Fk--~L~G~W~f~p~~~~~~T~V~f~ldF 207 (231)
.. +++ +-. ...-.|+|++. +++|+|++...+
T Consensus 80 ~~~~~~~~~~~~~~~~v~~~~~~~--~~gT~Ltl~~~~ 115 (146)
T cd08896 80 DALTPGWRPAEKPFMTAIITFEDE--GGGTRYTARARH 115 (146)
T ss_pred EeecCCcCCCCCCcEEEEEEEEec--CCcEEEEEEEEe
Confidence 42 111 101 13457999997 378999987543
No 53
>cd08895 SRPBCC_CalC_Aha1-like_2 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.80 E-value=0.0014 Score=52.68 Aligned_cols=106 Identities=15% Similarity=0.216 Sum_probs=67.0
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcc-eEEE--EEeCCCCeEEEEEEEcc------cCeEEEE-EEEEEecCCC
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQ-RSEI--LKHNPDGSFDAELEIGF------KFLVESY-VSHVELNRPK 169 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c~-~srV--L~r~~~g~~~Ael~Vgf------~g~~e~y-tSrv~~d~p~ 169 (231)
+..++.+++|+++||+++.|-+...+|.++-. ...+ .+..+++.+...+...- .+..... -.-..++|++
T Consensus 2 ~~~~r~i~ap~e~Vw~a~td~~~~~~W~~p~~~~~~~~~~d~~~GG~~~~~~~~~~~~~g~~~g~~~~~~g~v~~v~p~~ 81 (146)
T cd08895 2 DRLHRVIAAPPERVYRAFLDPDALAKWLPPDGMTGTVHEFDAREGGGFRMSLTYFDPSVGKTTGNTDVFGGRFLELVPNE 81 (146)
T ss_pred EEEEEEECCCHHHHHHHHcCHHHHhhcCCCCCeEeEEEEEecccCCeEEEEEEcCCccccccCCcEeeeEEEEEEEcCCC
Confidence 56788999999999999999999999987532 2222 23333444444333221 1111122 2456667888
Q ss_pred eEEEEec-ccccc-cceeeEEEEeeCCCCCceEEEEEEEE
Q 026904 170 FVKTTAS-DSSLF-DHLINIWEFNPGPSPGTCNLYFLVDF 207 (231)
Q Consensus 170 rI~~~~~-esg~F-k~L~G~W~f~p~~~~~~T~V~f~ldF 207 (231)
+|.++.. .++.. ....-.|+|++. +++|+|++....
T Consensus 82 ~i~~~~~~~~~~~~~~~~v~~~~~~~--~~~T~lt~~~~~ 119 (146)
T cd08895 82 RIVYTDVFDDPSLSGEMTMTWTLSPV--SGGTDVTIVQSG 119 (146)
T ss_pred EEEEEEEecCCCCCceEEEEEEEEec--CCCEEEEEEEeC
Confidence 9988753 11111 234678999997 378999998863
No 54
>cd08900 SRPBCC_CalC_Aha1-like_7 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.65 E-value=0.003 Score=50.44 Aligned_cols=105 Identities=12% Similarity=0.001 Sum_probs=66.0
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCC-----cceEEEEEeCCCCeEEEEEEEcccCeEEEEE-EEEEecCCCeEEE
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPW-----CQRSEILKHNPDGSFDAELEIGFKFLVESYV-SHVELNRPKFVKT 173 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~-----c~~srVL~r~~~g~~~Ael~Vgf~g~~e~yt-Srv~~d~p~rI~~ 173 (231)
+..++.+++|+++||+++.|=+...+|+.. |...++--+ +++.+...+.- .++...... .-..++||++|.+
T Consensus 2 ~~i~r~~~ap~e~Vw~a~tdp~~l~~W~~~~~~~~~~~~~~d~~-~Gg~~~~~~~~-~~g~~~~~~g~~~~~~p~~~l~~ 79 (143)
T cd08900 2 FTLERTYPAPPERVFAAWSDPAARARWFVPSPDWTVLEDEFDFR-VGGREVSRGGP-KGGPEITVEARYHDIVPDERIVY 79 (143)
T ss_pred EEEEEEeCCCHHHHHHHhcCHHHHHhcCCCCCCCceeeeEEecC-CCCEEEEEEEC-CCCCEEeeeEEEEEecCCceEEE
Confidence 456788999999999999999999999864 233332223 23444433322 233332323 4456688888876
Q ss_pred Eecc---cccccceeeEEEEeeCCCCCceEEEEEEEEE
Q 026904 174 TASD---SSLFDHLINIWEFNPGPSPGTCNLYFLVDFK 208 (231)
Q Consensus 174 ~~~e---sg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFe 208 (231)
+... +++-....-.|+|++. +++|+|++....-
T Consensus 80 t~~~~~~~~~~~~s~v~~~l~~~--~~gT~l~~~~~~~ 115 (143)
T cd08900 80 TYTMHIGGTLLSASLATVEFAPE--GGGTRLTLTEQGA 115 (143)
T ss_pred EEeeccCCccccceEEEEEEEEC--CCCEEEEEEEEEe
Confidence 6521 1111123456888887 3789999998763
No 55
>PF01852 START: START domain; InterPro: IPR002913 START (StAR-related lipid-transfer) is a lipid-binding domain in StAR, HD-ZIP and signalling proteins []. StAR (Steroidogenic Acute Regulatory protein) is a mitochondrial protein that is synthesised in response to luteinising hormone stimulation []. Expression of the protein in the absence of hormone stimulation is sufficient to induce steroid production, suggesting that this protein is required in the acute regulation of steroidogenesis. Representatives of the START domain family have been shown to bind different ligands such as sterols (StAR protein) and phosphatidylcholine (PC-TP). Ligand binding by the START domain can also regulate the activities of other domains that co-occur with the START domain in multidomain proteins such as Rho-gap, the homeodomain, and the thioesterase domain [, ]. The crystal structure of START domain of human MLN64 shows an alpha/beta fold built around an U-shaped incomplete beta-barrel. Most importantly, the interior of the protein encompasses a 26 x 12 x 11 Angstroms hydrophobic tunnel that is apparently large enough to bind a single cholesterol molecule []. The START domain structure revealed an unexpected similarity to that of the birch pollen allergen Bet v 1 and to bacterial polyketide cyclases/aromatases [, ]. ; PDB: 1JSS_B 2R55_B 1LN3_B 1LN1_A 1LN2_B 3FO5_A 2Z9Y_A 2E3R_A 3H3Q_B 2E3P_B ....
Probab=97.59 E-value=0.01 Score=49.80 Aligned_cols=124 Identities=13% Similarity=0.188 Sum_probs=86.3
Q ss_pred cccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEc--c--cCeEEEEE-EEEEec-CCC
Q 026904 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIG--F--KFLVESYV-SHVELN-RPK 169 (231)
Q Consensus 96 ~m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vg--f--~g~~e~yt-Srv~~d-~p~ 169 (231)
..+.++....+++++++++..+.|... +|-+.|.++++++.-+++......... + ......|. .+.... .++
T Consensus 44 ~~~~~k~~~~v~~~~~~~~~~~~~~~~--~Wd~~~~~~~~le~~~~~~~i~~~~~~~~~~~p~~~RDfv~~~~~~~~~~~ 121 (206)
T PF01852_consen 44 PIKMFKAEGVVPASPEQVVEDLLDDRE--QWDKMCVEAEVLEQIDEDTDIVYFVMKSPWPGPVSPRDFVFLRSWRKDEDG 121 (206)
T ss_dssp SCEEEEEEEEESSCHHHHHHHHHCGGG--HHSTTEEEEEEEEEEETTEEEEEEEEE-CTTTTSSEEEEEEEEEEEECTTS
T ss_pred cceEEEEEEEEcCChHHHHHHHHhhHh--hcccchhhheeeeecCCCCeEEEEEecccCCCCCCCcEEEEEEEEEEeccc
Confidence 457889999999999988888888887 999999999999985444322222222 2 22233333 332222 344
Q ss_pred --eEEEEecccccc----------cceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 170 --FVKTTASDSSLF----------DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 170 --rI~~~~~esg~F----------k~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
.|..++.+...+ +.+.+.|.|+|.+ ++.|+|++....+++..++..+++.+.
T Consensus 122 ~~~i~~~Si~~~~~~~~~~~~VR~~~~~s~~~i~~~~-~~~~~vt~~~~~D~~G~iP~~~~n~~~ 185 (206)
T PF01852_consen 122 TYVIVSRSIDHPQYPPNSKGYVRAEILISGWVIRPLG-DGRTRVTYVSQVDPKGWIPSWLVNMVV 185 (206)
T ss_dssp EEEEEEEEEEBTTSSTT-TTSEEEEEESEEEEEEEET-TCEEEEEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEeeeccccccccccCcceeeeeeEeEEEEEcc-CCCceEEEEEEECCCCCChHHHHHHHH
Confidence 233344322222 2456899999995 567999999999999999999999986
No 56
>PF00407 Bet_v_1: Pathogenesis-related protein Bet v I family; InterPro: IPR000916 Allergies are hypersensitivity reactions of the immune system to specific substances called allergens (such as pollen, stings, drugs, or food) that, in most people, result in no symptoms. A nomenclature system has been established for antigens (allergens) that cause IgE-mediated atopic allergies in humans [WHO/IUIS Allergen Nomenclature Subcommittee King T.P., Hoffmann D., Loewenstein H., Marsh D.G., Platts-Mills T.A.E., Thomas W. Bull. World Health Organ. 72:797-806(1994)]. This nomenclature system is defined by a designation that is composed of the first three letters of the genus; a space; the first letter of the species name; a space and an arabic number. In the event that two species names have identical designations, they are discriminated from one another by adding one or more letters (as necessary) to each species designation. The allergens in this family include allergens with the following designations: Aln g 1, Api g 1, Bet v 1, Car b 1, Cor a 1, Dau c 1, Mal d 1 and Pru a 1. Trees within the order Fagales possess particularly potent allergens, e.g. Bet v1, the major White Birch (Betula verrucosa) pollen antigen. Bet v1 is the main cause of type I allergies observed in early spring. Type I, or immunoglobulin E-mediated (IgE-mediated) allergies affect 1 in 5 people in Europe and North America. Commonly-observed symptoms are hay fever, dermatitis, asthma and, in severe cases, anaphylactic shock. First contact with these allergens results in sensitisation; subsequent contact produces a cross-linking reaction of IgE on mast cells and concomitant release of histamine. The inevitable symptoms of an allergic reaction ensue. Recent NMR analysis [] has confirmed earlier predictions of the protein structure and site of the major T-cell epitope []. The Bet v1 protein comprises 6 anti-parallel beta-strands and 3 alpha-helices. Four of the strands dominate the global fold, and 2 of the helices form a C-terminal amphipathic helical motif. This motif is believed to be the T-cell epitope. Other proteins belonging to this family include the major pollen allergens: Aln g I from Alnus glutinosa (Alder); Api G I from Apium graveolens (Celery); Car b I from Carpinus betulus (European hornbeam); Cor a I from Corylus avellana (European hazel); Mal d I from Malus domestica (Apple). The motif is also found in: the wound-induced protein AoPR1 from Asparagus officinalis (Garden asparagus); pathogenesis-related proteins from Phaseolus vulgaris (Kidney bean) and Petroselinum crispum (Parsley) (PR1-1 and PR1-3); the disease resistance response proteins, STH-2 and STH-21, from Solanum tuberosum (Potato) and pI49, pI176 and DRRG49-C from Pisum sativum (Garden pea); the P. sativum abscisic acid-responsive proteins ABR17 and ABR18; and the stress-induced protein SAM22 from Glycine max (Soybean). ; GO: 0006952 defense response, 0009607 response to biotic stimulus; PDB: 1IFV_A 4A8V_A 4A8U_A 2K7H_A 2QIM_A 3E85_A 1H2O_A 1E09_A 1QMR_A 1FSK_D ....
Probab=97.56 E-value=0.0058 Score=50.61 Aligned_cols=133 Identities=12% Similarity=0.170 Sum_probs=91.2
Q ss_pred cEEEEEEEEcCCHHHHHHHHH-chhcccCCCCCc-ceEEEEEeCCCCe-EEEEEEEcccCeEEEEEEEEEe-cCC-CeEE
Q 026904 98 KVYEERRVLGYSPEQLFDVVA-AVDLYHGFVPWC-QRSEILKHNPDGS-FDAELEIGFKFLVESYVSHVEL-NRP-KFVK 172 (231)
Q Consensus 98 ~~~~~s~~I~appeqVydLVa-DVe~YPeFvP~c-~~srVL~r~~~g~-~~Ael~Vgf~g~~e~ytSrv~~-d~p-~rI~ 172 (231)
-.++.+..+++||+++|++.. .-...|+-+|.. +++++++-+++.. ..-.|...-++-...+..+++. |.. ..+.
T Consensus 4 ~~~~~E~~~~~~a~k~~ka~~~~~~llpki~P~~i~sve~~eGdgg~gGSIk~~~f~~~~~~~~~Kekve~~D~~~~~~~ 83 (151)
T PF00407_consen 4 GKLEVEVEVKVSADKLWKAFKSSPHLLPKILPHVIKSVEVVEGDGGPGGSIKKWTFGPGGPFKYVKEKVEAIDEENKTIT 83 (151)
T ss_dssp EEEEEEEEESS-HHHHHHHHTTHHHHHHHHSTTTEEEEEEEESSSSTTT-EEEEEEETTSSEEEEEEEEEEEETTTTEEE
T ss_pred EEEEEEEEecCCHHHHHHHHhcCccchhhhChhhceeEEEEccCCCCCCeEEEEEecCCCCcceeEEEEEeecCCCcEEE
Confidence 357888899999999999999 556678888765 5566777654311 3446677666666777788776 444 3889
Q ss_pred EEecccccc---cceeeEEEEeeCCCCCceEEEEEEEEEeCC---hHHHHHHHHHHHHhhhhhcC
Q 026904 173 TTASDSSLF---DHLINIWEFNPGPSPGTCNLYFLVDFKFHS---PLYRQVMVLHLVFHIMLCQY 231 (231)
Q Consensus 173 ~~~~esg~F---k~L~G~W~f~p~~~~~~T~V~f~ldFef~s---pL~~~la~~~~v~~~Mi~~~ 231 (231)
++..++++. +.+...-++.|.+ +++|.+...++|+..+ |.+...+..+...-+.|+||
T Consensus 84 y~viEGd~l~~~~~~~~~~~~~~~~-~g~~v~k~t~~Ye~~~~~~~~p~~~~~~~~~~~K~ieay 147 (151)
T PF00407_consen 84 YTVIEGDVLGDYKSFKSTIQKIPKG-DGGCVVKWTIEYEKKGEDVPPPEKYLDFAVGMFKAIEAY 147 (151)
T ss_dssp EEEEEETTGTTTEEEEEEEEEEEET-TSCEEEEEEEEEEESSTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEeccccccEEEEEEEEEecCCC-CCceEEEEEEEEEecCCCCCCcHHHHHHHHHHHHHHHHH
Confidence 998886543 4555666666663 5679999999999954 45666666554555566665
No 57
>cd08897 SRPBCC_CalC_Aha1-like_4 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.54 E-value=0.0025 Score=50.35 Aligned_cols=98 Identities=11% Similarity=0.048 Sum_probs=62.7
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCc-----ceEEEEEeCCCCeEEEEEEEcccCeEEEEE-EEEEecCCCeEEE
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWC-----QRSEILKHNPDGSFDAELEIGFKFLVESYV-SHVELNRPKFVKT 173 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c-----~~srVL~r~~~g~~~Ael~Vgf~g~~e~yt-Srv~~d~p~rI~~ 173 (231)
+..++.+++|+++||+++.|=|.+.+|++.. ...+. .-.++|.+...+.-.-+.....+. .-..++||+++.+
T Consensus 2 ~~~~~~~~ap~e~Vw~a~td~e~~~~W~~~~~~~~~~~~~~-d~~~GG~~~~~~~~~~g~~~~~~~g~~~ei~p~~~l~~ 80 (133)
T cd08897 2 ITVETTVDAPIEKVWEAWTTPEHITKWNFASDDWHCPSAEN-DLRVGGKFSYRMEAKDGSMGFDFEGTYTEVEPHKLIEY 80 (133)
T ss_pred EEEEEEeCCCHHHHHHHhCCHHHHhhCCCCCCCcccceeee-cCCcCCEEEEEEEcCCCCcccccceEEEEECCCCEEEE
Confidence 5678999999999999999999999997542 22222 222334444443221111111112 3346678889999
Q ss_pred EecccccccceeeEEEEeeCCCCCceEEEEEE
Q 026904 174 TASDSSLFDHLINIWEFNPGPSPGTCNLYFLV 205 (231)
Q Consensus 174 ~~~esg~Fk~L~G~W~f~p~~~~~~T~V~f~l 205 (231)
+..+ + ..-.|+|++. +++|+|++..
T Consensus 81 ~~~~-~----~~v~~~l~~~--~~gT~l~l~~ 105 (133)
T cd08897 81 TMED-G----REVEVEFTEE--GDGTKVVETF 105 (133)
T ss_pred EcCC-C----CEEEEEEEEC--CCCEEEEEEE
Confidence 8733 2 3568999997 3789999863
No 58
>cd08909 START_STARD13-like C-terminal lipid-binding START domain of mammalian STARD13 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD13 (also known as DLC-2, Arhgap37, and SDCCAG13) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=97.51 E-value=0.0028 Score=55.39 Aligned_cols=125 Identities=6% Similarity=-0.040 Sum_probs=86.0
Q ss_pred ccccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEc-ccCe-EEEEEEEEEe---cCCC
Q 026904 95 VLSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIG-FKFL-VESYVSHVEL---NRPK 169 (231)
Q Consensus 95 ~~m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vg-f~g~-~e~ytSrv~~---d~p~ 169 (231)
+.++..+.+..++++|++|.+.|.+ ..++|-..|.+++++++-+++.....-.+. ..++ ...|.....+ .+..
T Consensus 49 ~~lk~~r~~~ei~~~p~~VL~~vl~--~R~~WD~~~~~~~~ie~ld~~tdi~~y~~~~~~P~~~RD~v~~R~w~~~~~~G 126 (205)
T cd08909 49 NPLRLWKVSVEVEAPPSVVLNRVLR--ERHLWDEDFLQWKVVETLDKQTEVYQYVLNCMAPHPSRDFVVLRSWRTDLPKG 126 (205)
T ss_pred CceEEEEEEEEeCCCHHHHHHHHHh--hHhhHHhhcceeEEEEEeCCCcEEEEEEeecCCCCCCCEEEEEEEEEEeCCCC
Confidence 4678899999999999999888866 799999999999999986543211111211 1111 3344444443 1122
Q ss_pred --eEEEEeccc--ccc------cceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 170 --FVKTTASDS--SLF------DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 170 --rI~~~~~es--g~F------k~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
.|...++++ .|. ..+.|.|.++|.+ ++.|+|++....+++..+++++.+.+.
T Consensus 127 ~~vi~~~Sv~H~~~p~~g~VRa~~~~~gylI~P~~-~g~trvt~i~~vDpkG~~P~W~~n~~g 188 (205)
T cd08909 127 ACSLVSVSVEHEEAPLLGGVRAVVLDSQYLIEPCG-SGKSRLTHICRVDLKGHSPEWYNKGFG 188 (205)
T ss_pred cEEEEEecCCCCcCCCCCcEEEEEEcCcEEEEECC-CCCEEEEEEEEecCCCCChHHHHHhHH
Confidence 223333221 111 2367899999995 578999999999999999999999775
No 59
>cd07826 SRPBCC_CalC_Aha1-like_9 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.40 E-value=0.0091 Score=47.95 Aligned_cols=107 Identities=13% Similarity=-0.004 Sum_probs=66.3
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcc----eEEEEEeCCCCeEEEEEEEcccCeEEE-EEEEEEecCCCeEEEE
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQ----RSEILKHNPDGSFDAELEIGFKFLVES-YVSHVELNRPKFVKTT 174 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c~----~srVL~r~~~g~~~Ael~Vgf~g~~e~-ytSrv~~d~p~rI~~~ 174 (231)
+..++.+++||++||+.+.|=+.+.+|...-. ..++ +-.++|.+...+.-. +|.... .-.-..++||++|.++
T Consensus 2 l~i~r~~~ap~e~Vw~a~Tdpe~l~~W~~p~~~~~~~~~~-d~r~GG~~~~~~~~~-~g~~~~~~g~~~ei~p~~~l~~t 79 (142)
T cd07826 2 IVITREFDAPRELVFRAHTDPELVKRWWGPRGLTMTVCEC-DIRVGGSYRYVHRAP-DGEEMGFHGVYHEVTPPERIVQT 79 (142)
T ss_pred EEEEEEECCCHHHHHHHhCCHHHHhhccCCCCCcceEEEE-eccCCCEEEEEEECC-CCCEecceEEEEEEcCCCEEEEE
Confidence 56789999999999999999999999987421 1222 222345544433221 222112 2244556788888776
Q ss_pred ec-ccccccceeeEEEEeeCCCCCceEEEEEEEEEeCCh
Q 026904 175 AS-DSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSP 212 (231)
Q Consensus 175 ~~-esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~sp 212 (231)
.. ++.+-....-.|+|++. +++|+|++... |.++
T Consensus 80 ~~~~~~~~~~s~v~~~l~~~--~~gT~l~l~~~--~~~~ 114 (142)
T cd07826 80 EEFEGLPDGVALETVTFTEL--GGRTRLTATSR--YPSK 114 (142)
T ss_pred eEecCCCCCceEEEEEEEEC--CCCEEEEEEEE--eCCH
Confidence 53 21112334567999997 37899998755 5544
No 60
>cd08904 START_STARD6-like Lipid-binding START domain of mammalian STARD6 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD6 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD6 is expressed in male germ cells of normal rats, and in the steroidogenic Leydig cells of perinatal hypothyroid testes. It may play a pivotal role in the steroidogenesis as well as in the spermatogenesis of normal rats. STARD6 has also been detected in the rat nervous system, and may participate in neurosteroid synthesis.
Probab=97.35 E-value=0.008 Score=52.36 Aligned_cols=131 Identities=15% Similarity=0.197 Sum_probs=87.2
Q ss_pred cEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEE-EEEccc-C-e-EEEEEEEEEecC--CC-e
Q 026904 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAE-LEIGFK-F-L-VESYVSHVELNR--PK-F 170 (231)
Q Consensus 98 ~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ae-l~Vgf~-g-~-~e~ytSrv~~d~--p~-r 170 (231)
+.++.+.+++++++++|+++.|.+.=.+|=+-|.+.+++++-+++..... ...++. + + ...|.....+.+ .+ .
T Consensus 46 kl~k~egvi~~~~e~v~~~l~~~e~r~~Wd~~~~~~~iie~Id~~T~I~~~~~~~~~~~~vspRDfV~vr~~~r~~~~~~ 125 (204)
T cd08904 46 NLYRVEGIIPESPAKLIQFMYQPEHRIKWDKSLQVYKMLQRIDSDTFICHTITQSFAMGSISPRDFVDLVHIKRYEGNMN 125 (204)
T ss_pred eEEEEEEEecCCHHHHHHHHhccchhhhhcccccceeeEEEeCCCcEEEEEecccccCCcccCceEEEEEEEEEeCCCEE
Confidence 68999999999999999999999999999999999999998654442222 112222 2 1 233443333211 12 2
Q ss_pred EE-EEeccc-------ccc--cceeeEEEEeeCCC-CCceEEEEEEEEEeCChHHHHHHHHHHHHhhhhh
Q 026904 171 VK-TTASDS-------SLF--DHLINIWEFNPGPS-PGTCNLYFLVDFKFHSPLYRQVMVLHLVFHIMLC 229 (231)
Q Consensus 171 I~-~~~~es-------g~F--k~L~G~W~f~p~~~-~~~T~V~f~ldFef~spL~~~la~~~~v~~~Mi~ 229 (231)
|. ..++++ |-. ...-|.|-+.|+++ +..|++++.+..+++..|+..+.+.+ +.+.|++
T Consensus 126 ii~~~sv~Hp~~Pp~~g~VRa~n~~~G~~i~pl~~~p~~t~l~~~~~~DlkG~lP~~vv~~~-~~~~~~~ 194 (204)
T cd08904 126 IVSSVSVEYPQCPPSSNYIRGYNHPCGYVCSPLPENPAYSKLVMFVQPELRGNLSRSVIEKT-MPTNLVN 194 (204)
T ss_pred EEEEEecccCCCCCCCCcEEEeeeccEEEEEECCCCCCceEEEEEEEeCCCCCCCHHHHHHH-hHHHHHH
Confidence 22 112111 111 11237799999852 24799999999999999999999988 4454543
No 61
>cd08901 SRPBCC_CalC_Aha1-like_8 Putative hydrophobic ligand-binding SRPBCC domain of an uncharacterized subgroup of CalC- and Aha1-like proteins. SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of a functionally uncharacterized subgroup of CalC- and Aha1-like proteins. This group shows similarity to the SRPBCC domains of Micromonospora echinospora CalC (a protein which confers resistance to enediynes) and human Aha1 (one of several co-chaperones which regulate the dimeric chaperone Hsp90), and belongs to the SRPBCC domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands.
Probab=97.29 E-value=0.0083 Score=47.74 Aligned_cols=98 Identities=10% Similarity=0.092 Sum_probs=63.7
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEecCCCeEEEEecccc
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASDSS 179 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~d~p~rI~~~~~esg 179 (231)
++.++.+++|+++||+.+.|-+...+|.+.-...+ -.+++.+...... +++ ...-.-..++||++|.++....+
T Consensus 2 ~~~~~~i~ap~e~Vw~a~t~p~~l~~W~~~~~~~~---~~~Gg~~~~~~~~-~~~--~~~g~~~~~~p~~~l~~~w~~~~ 75 (136)
T cd08901 2 AKTAMLIRRPVAEVFEAFVDPEITTKFWFTGSSGR---LEEGKTVTWDWEM-YGA--SVPVNVLEIEPNKRIVIEWGDPG 75 (136)
T ss_pred eeEEEEecCCHHHHHHHhcCHHHhccccccCCCcc---ccCCCEEEEEEEc-cCC--ceEEEEEEEcCCCEEEEEecCCC
Confidence 56788999999999999999999999755422221 1223433322222 122 11223455678889988774423
Q ss_pred cccceeeEEEEeeCCCCCceEEEEEEE
Q 026904 180 LFDHLINIWEFNPGPSPGTCNLYFLVD 206 (231)
Q Consensus 180 ~Fk~L~G~W~f~p~~~~~~T~V~f~ld 206 (231)
+ ...-.|+|++.+ +++|+|++...
T Consensus 76 ~--~s~v~~~l~~~~-~ggT~ltl~~~ 99 (136)
T cd08901 76 E--PTTVEWTFEELD-DGRTFVTITES 99 (136)
T ss_pred C--CEEEEEEEEECC-CCcEEEEEEEC
Confidence 2 245689999973 37899999964
No 62
>cd08891 SRPBCC_CalC Ligand-binding SRPBCC domain of Micromonospora echinospora CalC and related proteins. This subfamily includes Micromonospora echinospora CalC (MeCalC) and related proteins. These proteins belong to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. MeCalC confers resistance to the enediyne, calicheamicin gamma 1 (CLM). Enediyne antibiotics are antitumor agents. Enediynes have an in vitro and in vivo role as DNA damaging agents; they consist of a DNA recognition unit (e.g., aryltetrasaccharide of CLM), an activating component (e.g., methyl trisulfide of CLM), which promotes cycloaromatization, and the enediyne warhead which cycloaromatizes to a reactive diradical species, resulting in oxidative strand cleavage of the targeted DNA sequence. MeCalC confers resistance to CLM by a self sacrificing mechanism: the transient enediyne diradical speci
Probab=97.28 E-value=0.011 Score=47.55 Aligned_cols=102 Identities=11% Similarity=0.027 Sum_probs=62.1
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcc-------eEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEecCCCeEE
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQ-------RSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVK 172 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c~-------~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~d~p~rI~ 172 (231)
++.++.|+||+++||+.+.| ...+|.+.-. ....++-.++|.+.. ..-+|-...+-.-...+||++|.
T Consensus 2 ~~~~~~i~Ap~e~Vw~a~t~--~l~~W~~p~~~~~~~~~~~~~~d~~~GG~~~~---~~~~g~~~~~g~v~~v~p~~~l~ 76 (149)
T cd08891 2 VRKSVTVPAPPERAFEVFTE--GFGAWWPPEYHFVFSPGAEVVFEPRAGGRWYE---IGEDGTECEWGTVLAWEPPSRLV 76 (149)
T ss_pred eEEEEEecCCHHHHHHHHHh--chhhccCCCcccccCCCccEEEcccCCcEEEE---ecCCCcEeceEEEEEEcCCCEEE
Confidence 67899999999999999999 4777765311 111222223343321 12223322344556678888887
Q ss_pred EEeccccccc-----ceeeEEEEeeCCCCCceEEEEEEEE
Q 026904 173 TTASDSSLFD-----HLINIWEFNPGPSPGTCNLYFLVDF 207 (231)
Q Consensus 173 ~~~~esg~Fk-----~L~G~W~f~p~~~~~~T~V~f~ldF 207 (231)
++......+. ...-+|+|++.+ +++|+|++....
T Consensus 77 ~tw~~~~~~~~~~~~~t~vt~~l~~~~-~~gT~ltl~~~~ 115 (149)
T cd08891 77 FTWQINADWRPDPDKASEVEVRFEAVG-AEGTRVELEHRG 115 (149)
T ss_pred EEeccCCCcCcCCCCceEEEEEEEECC-CCCeEEEEEEec
Confidence 7653111111 245679999972 278999998875
No 63
>PF08327 AHSA1: Activator of Hsp90 ATPase homolog 1-like protein; InterPro: IPR013538 This family includes eukaryotic, prokaryotic and archaeal proteins that bear similarity to a C-terminal region of human activator of 90 kDa heat shock protein ATPase homologue 1 (AHSA1/p38, O95433 from SWISSPROT). This protein is known to interact with the middle domain of Hsp90, and stimulate its ATPase activity []. It is probably a general up regulator of Hsp90 function, particularly contributing to its efficiency in conditions of increased stress []. p38 is also known to interact with the cytoplasmic domain of the VSV G protein, and may thus be involved in protein transport []. It has also been reported as being under expressed in Down's syndrome. This region is found repeated in two members of this family (Q8XY04 from SWISSPROT and Q6MH87 from SWISSPROT). ; GO: 0006950 response to stress; PDB: 2KEW_A 2KTE_A 2IL5_A 1ZXF_A 2L65_A 2GKD_A 1XN6_A 3OTL_B 2LCG_A 3Q63_D ....
Probab=97.27 E-value=0.0066 Score=46.31 Aligned_cols=93 Identities=14% Similarity=0.145 Sum_probs=61.1
Q ss_pred cCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEE-EEEecCCCeEEEEecccc--cccc
Q 026904 107 GYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVS-HVELNRPKFVKTTASDSS--LFDH 183 (231)
Q Consensus 107 ~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytS-rv~~d~p~rI~~~~~esg--~Fk~ 183 (231)
+||+++||+++.|-+.+.+| +-......+..+++.+.. .+..+....+.. ...+.|+++|.++....+ +...
T Consensus 1 ~ap~e~Vw~a~t~~~~~~~W--~~~~~~~~~~~~Gg~~~~---~~~~g~~~~~~~~v~~~~p~~~i~~~~~~~~~~~~~~ 75 (124)
T PF08327_consen 1 DAPPERVWEALTDPEGLAQW--FTTSEAEMDFRPGGSFRF---MDPDGGEFGFDGTVLEVEPPERIVFTWRMPDDPDGPE 75 (124)
T ss_dssp SSSHHHHHHHHHSHHHHHHH--SEEEEEEEECSTTEEEEE---EETTSEEEEEEEEEEEEETTTEEEEEEEEETSSSCEE
T ss_pred CcCHHHHHHHHCCHhHHhhc--cCCCcceeeeecCCEEEE---EecCCCCceeeEEEEEEeCCEEEEEEEEccCCCCCCc
Confidence 58999999999999999999 222222222233343333 234444444443 566678888888764222 1446
Q ss_pred eeeEEEEeeCCCCCceEEEEEEE
Q 026904 184 LINIWEFNPGPSPGTCNLYFLVD 206 (231)
Q Consensus 184 L~G~W~f~p~~~~~~T~V~f~ld 206 (231)
....|+|++. +++|+|.+..+
T Consensus 76 ~~v~~~~~~~--~~~T~l~~~~~ 96 (124)
T PF08327_consen 76 SRVTFEFEEE--GGGTRLTLTHS 96 (124)
T ss_dssp EEEEEEEEEE--TTEEEEEEEEE
T ss_pred eEEEEEEEEc--CCcEEEEEEEE
Confidence 7889999995 48899999994
No 64
>cd08892 SRPBCC_Aha1 Putative hydrophobic ligand-binding SRPBCC domain of the Hsp90 co-chaperone Aha1 and related proteins. This subfamily includes the C-terminal SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain of Aha1, and related domains. Proteins in this group belong to the SRPBCC domain superfamily of proteins which bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Aha1 is one of several co-chaperones, which regulate the dimeric chaperone Hsp90. Hsp90, Aha1, and other accessory proteins interact in a chaperone cycle driven by ATP binding and hydrolysis. Aha1 promotes dimerization of the N-terminal domains of Hsp90, and stimulates its low intrinsic ATPase activity. One Aha1 molecule binds per Hsp90 dimer. The N- and C- terminal domains of Aha1 cooperatively bind across the dimer interface of Hsp90. The C-terminal domain of Aha1 binds the N-terminal Hsp90 ATPase domain. Aha1 may regulate the dwell time of Hsp90 with client proteins. Aha1 m
Probab=96.47 E-value=0.1 Score=41.00 Aligned_cols=97 Identities=12% Similarity=0.005 Sum_probs=62.0
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEecCCCeEEEEecc-c
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASD-S 178 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~d~p~rI~~~~~e-s 178 (231)
++.++.+++|+++||+.+.|=+...+|... ... .+-.+++.+.. . -+.+ .-.-..++||++|.++..- +
T Consensus 2 i~~~r~i~ap~e~Vw~A~T~~e~l~~W~~~--~~~-~d~~~GG~~~~--~--~g~~---~g~~~~i~p~~~l~~~w~~~~ 71 (126)
T cd08892 2 ISLTETFQVPAEELYEALTDEERVQAFTRS--PAK-VDAKVGGKFSL--F--GGNI---TGEFVELVPGKKIVQKWRFKS 71 (126)
T ss_pred eEEEEEECCCHHHHHHHHCCHHHHHhhcCC--Cce-ecCCCCCEEEE--e--CCce---EEEEEEEcCCCEEEEEEEcCC
Confidence 567899999999999999999998888643 112 23333344321 1 1111 2234556788888766531 1
Q ss_pred cc-ccceeeEEEEeeCCCCCceEEEEEEEEE
Q 026904 179 SL-FDHLINIWEFNPGPSPGTCNLYFLVDFK 208 (231)
Q Consensus 179 g~-Fk~L~G~W~f~p~~~~~~T~V~f~ldFe 208 (231)
.+ -....-.|+|++. +++|+|++....-
T Consensus 72 ~~~~~~s~v~~~l~~~--~~gT~ltl~~~g~ 100 (126)
T cd08892 72 WPEGHYSTVTLTFTEK--DDETELKLTQTGV 100 (126)
T ss_pred CCCCCcEEEEEEEEEC--CCCEEEEEEEECC
Confidence 11 1235578999997 3789999998643
No 65
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=95.71 E-value=0.37 Score=39.83 Aligned_cols=119 Identities=12% Similarity=0.045 Sum_probs=76.0
Q ss_pred EEEEEEEcCCHHHHHHHHHchhcccCCCCCcc----eEEEEEeCCCCeEEEEE--EEcc----------cCeEEEEEEEE
Q 026904 100 YEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQ----RSEILKHNPDGSFDAEL--EIGF----------KFLVESYVSHV 163 (231)
Q Consensus 100 ~~~s~~I~appeqVydLVaDVe~YPeFvP~c~----~srVL~r~~~g~~~Ael--~Vgf----------~g~~e~ytSrv 163 (231)
++.+..+|+|+++||+++.|=+-|.+=+.... .+..++.++++ +.+.+ .+.. -+-..+++-.-
T Consensus 1 f~~~~~~~~~~~~v~~~~~d~~y~~~r~~~~g~~~~~~~~~~~~~~g-~~v~~~~~v~~~~lP~~~~k~v~~~l~v~~~e 79 (159)
T PF10698_consen 1 FEHSVEYPAPVERVWAAFTDEDYWEARCAALGADNAEVESFEVDGDG-VRVTVRQTVPADKLPSAARKFVGGDLRVTRTE 79 (159)
T ss_pred CeEEEEcCCCHHHHHHHHcCHHHHHHHHHHcCCCCceEEEEEEcCCe-EEEEEEEecChhhCCHHHHHhcCCCeEEEEEE
Confidence 35678899999999999999765554433332 23334455544 22322 2222 11234455555
Q ss_pred EecC--CC--eEEEEec-ccccccceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 164 ELNR--PK--FVKTTAS-DSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 164 ~~d~--p~--rI~~~~~-esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
+|.+ +. ...+... .+.| -.+.|.-++.+. +++|+++++.+++.+.|+++..+..++
T Consensus 80 ~w~~~~~g~~~g~~~~~~~G~P-~~~~G~~~L~~~--~~gt~~~~~g~v~v~VPlvGgkiE~~v 140 (159)
T PF10698_consen 80 TWTPLDDGRRTGTFTVSIPGAP-VSISGTMRLRPD--GGGTRLTVEGEVKVKVPLVGGKIEKAV 140 (159)
T ss_pred EEecCCCCeEEEEEEEEecCce-EEEEEEEEEecC--CCCEEEEEEEEEEEEEccccHHHHHHH
Confidence 5533 22 2333322 3344 458999999996 478999999999999999999998887
No 66
>cd08902 START_STARD4-like Lipid-binding START domain of mammalian STARD4 and related proteins. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD4 and related domains. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. STARD4 plays an important role in steroidogenesis, trafficking cholesterol into mitochondria. It specifically binds cholesterol, and demonstrates limited binding to another sterol, 7alpha-hydroxycholesterol. STARD4 is ubiquitously expressed, with highest levels in liver and kidney.
Probab=95.65 E-value=0.4 Score=42.05 Aligned_cols=131 Identities=8% Similarity=0.060 Sum_probs=86.9
Q ss_pred cEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEE-EEEEcccCe---EEEEEEEE-EecCC-CeE
Q 026904 98 KVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDA-ELEIGFKFL---VESYVSHV-ELNRP-KFV 171 (231)
Q Consensus 98 ~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~A-el~Vgf~g~---~e~ytSrv-~~d~p-~rI 171 (231)
+.++.+.+|+..++++++.|.+...=.+|=|-+++.+|+++-+++.+.. ..+.+..+. ...|+.-. ..... ..+
T Consensus 47 kl~R~Egvv~~~~~ev~d~v~~~~~r~~Wd~~v~~~~Iie~Id~dt~I~~yvt~~~~~~iISpRDFVdv~~~~~~~d~~~ 126 (202)
T cd08902 47 YLYKAQGVVEDVYNRIVDHIRPGPYRLDWDSLMTSMDIIEEFEENCCVMRYTTAGQLLNIISPREFVDFSYTTQYEDGLL 126 (202)
T ss_pred ceEEEEEEecCCHHHHHHHHhcccchhcccchhhheeHhhhhcCCcEEEEEEcccCCcCccCccceEEEEEEEEeCCCeE
Confidence 6899999999999999999999988899999999999999876555442 445444321 22333221 11122 222
Q ss_pred EEEe-ccc-----cccc--ceeeEEEEeeCCC-CCceEEEEEEEEEeCChHHHHHHHHHHHHhhhhh
Q 026904 172 KTTA-SDS-----SLFD--HLINIWEFNPGPS-PGTCNLYFLVDFKFHSPLYRQVMVLHLVFHIMLC 229 (231)
Q Consensus 172 ~~~~-~es-----g~Fk--~L~G~W~f~p~~~-~~~T~V~f~ldFef~spL~~~la~~~~v~~~Mi~ 229 (231)
..-. .+. |-.+ ..-+.|-+.|.++ +..|.++..+..+++.-|+..+++++ +.+.|++
T Consensus 127 s~gvs~~~~~~ppg~VRgen~p~g~i~~Pl~~~p~k~~~t~~lq~DLkG~LPqsiIdq~-~~~~~~~ 192 (202)
T cd08902 127 SCGVSIEYEEARPNFVRGFNHPCGWFCVPLKDNPSHSLLTGYIQTDLRGMLPQSAVDTA-MASTLVN 192 (202)
T ss_pred EEEeeecCCCCCCCeEeecccccEEEEEECCCCCCceEEEEEEEecCCCCccHHHHHHH-hhHHHHH
Confidence 2211 111 1111 1125699999862 23678888888999999999999998 4555543
No 67
>COG3832 Uncharacterized conserved protein [Function unknown]
Probab=95.44 E-value=0.45 Score=38.91 Aligned_cols=96 Identities=15% Similarity=0.157 Sum_probs=60.7
Q ss_pred cccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEE-EEecCCCeEEEE
Q 026904 96 LSKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSH-VELNRPKFVKTT 174 (231)
Q Consensus 96 ~m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSr-v~~d~p~rI~~~ 174 (231)
.-..++.+++|++||++||+.+.|=+..++|+. -...+.--+.+ +..+..+....+.. ..+..+ ...+||++|.++
T Consensus 6 ~~~~~~~er~i~aP~e~Vf~A~Tdpe~l~~W~~-~~~~~~d~r~g-g~~~~~~~~~~g~~-~~~~~~~~~v~p~~rIv~t 82 (149)
T COG3832 6 EDRTLEIERLIDAPPEKVFEALTDPELLARWFM-PGGAEFDARTG-GGERVRFRGPDGPV-HSFEGEYLEVVPPERIVFT 82 (149)
T ss_pred CCceEEEEEeecCCHHHHHHHhcCHHHHHhhcC-CCCCccceecC-CceEEeeecCCCCe-eecceEEEEEcCCcEEEEE
Confidence 346799999999999999999999999999998 22111111222 22233333333322 344433 344677888877
Q ss_pred eccc---ccccceeeEEEEeeCC
Q 026904 175 ASDS---SLFDHLINIWEFNPGP 194 (231)
Q Consensus 175 ~~es---g~Fk~L~G~W~f~p~~ 194 (231)
.... .++..-...|+|++..
T Consensus 83 w~~~~~~~~~~~~~v~~~l~~~~ 105 (149)
T COG3832 83 WDFDEDGEPFLKSLVTITLTPED 105 (149)
T ss_pred eccCCCCCcccCceEEEEEEEec
Confidence 6322 3444567889999964
No 68
>PTZ00220 Activator of HSP-90 ATPase; Provisional
Probab=94.89 E-value=0.32 Score=38.85 Aligned_cols=92 Identities=14% Similarity=0.057 Sum_probs=56.1
Q ss_pred EcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEecCCCeEEEEeccc--ccccc
Q 026904 106 LGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASDS--SLFDH 183 (231)
Q Consensus 106 I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~d~p~rI~~~~~es--g~Fk~ 183 (231)
+++||++||+.+.|=+...+|.- +...+ ++-..+|.+... .+.+.. .-++++||++|.++..-. ++-..
T Consensus 1 f~ap~e~Vw~A~Tdp~~l~~w~~-~~~~~-~d~~~GG~f~~~----~~~~~G---~~~ev~pp~rlv~tw~~~~~~~~~~ 71 (132)
T PTZ00220 1 FYVPPEVLYNAFLDAYTLTRLSL-GSPAE-MDAKVGGKFSLF----NGSVEG---EFTELEKPKKIVQKWRFRDWEEDVY 71 (132)
T ss_pred CCCCHHHHHHHHcCHHHHHHHhc-CCCcc-ccCCcCCEEEEe----cCceEE---EEEEEcCCCEEEEEEecCCCCCCCc
Confidence 47999999999999999988841 11122 222233433221 122222 345567888888776321 11112
Q ss_pred eeeEEEEeeCCCCCceEEEEEEE-E
Q 026904 184 LINIWEFNPGPSPGTCNLYFLVD-F 207 (231)
Q Consensus 184 L~G~W~f~p~~~~~~T~V~f~ld-F 207 (231)
..-+|+|++.. +++|+|++... +
T Consensus 72 s~vt~~~~~~~-~g~T~lt~~~~g~ 95 (132)
T PTZ00220 72 SKVTIEFRAVE-EDHTELKLTQTGI 95 (132)
T ss_pred eEEEEEEEeCC-CCcEEEEEEEecC
Confidence 45689999963 36899999987 5
No 69
>COG4276 Uncharacterized conserved protein [Function unknown]
Probab=92.30 E-value=5.8 Score=33.11 Aligned_cols=108 Identities=13% Similarity=0.156 Sum_probs=72.5
Q ss_pred ccEEEEEEEEcCCHHHHHHHHHchhcccCCCCCcceEEEEEeCCCCe-EEEEEEEcccCe----EEEEEEEEEe---cCC
Q 026904 97 SKVYEERRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGS-FDAELEIGFKFL----VESYVSHVEL---NRP 168 (231)
Q Consensus 97 m~~~~~s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~-~~Ael~Vgf~g~----~e~ytSrv~~---d~p 168 (231)
|.++...-+|.+|.|.||+-=+-.+..-..-|..+ .|+..+ +.. --.++..+...+ ..+|+++.+. +++
T Consensus 1 m~tF~~~~~i~aP~E~VWafhsrpd~lq~LTppw~--VV~p~g-~eitqgtri~m~l~pfglp~~~tW~Arhte~~~d~~ 77 (153)
T COG4276 1 MGTFVYRTTITAPHEMVWAFHSRPDALQRLTPPWI--VVLPLG-SEITQGTRIAMGLTPFGLPAGLTWVARHTESGFDNG 77 (153)
T ss_pred CcceEEeeEecCCHHHHhhhhcCccHHHhcCCCcE--EeccCC-CcccceeeeeecceeecCCCCceEEEEeeecccCCc
Confidence 45778888999999999999999999888888776 333332 211 112333333322 3699998876 434
Q ss_pred CeEEEEecccccccceeeEEE----EeeCCCCCceEEEEEEEEEeCCh
Q 026904 169 KFVKTTASDSSLFDHLINIWE----FNPGPSPGTCNLYFLVDFKFHSP 212 (231)
Q Consensus 169 ~rI~~~~~esg~Fk~L~G~W~----f~p~~~~~~T~V~f~ldFef~sp 212 (231)
.+-.-.+ ..|||+.+ .|+ |.+. +|+|.+.=++.|++...
T Consensus 78 ~~FtDv~-i~gPfp~~--~WrHtH~F~~e--gg~TvliD~Vsye~p~g 120 (153)
T COG4276 78 SRFTDVC-ITGPFPAL--NWRHTHNFVDE--GGGTVLIDSVSYELPAG 120 (153)
T ss_pred ceeeeee-ecCCccce--eeEEEeeeecC--CCcEEEEeeEEeeccCc
Confidence 4444334 45999987 464 6666 37898888888888765
No 70
>cd08863 SRPBCC_DUF1857 DUF1857, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=91.46 E-value=7.2 Score=32.33 Aligned_cols=65 Identities=25% Similarity=0.305 Sum_probs=50.7
Q ss_pred CCHHHHHH-HHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEecCCCeEEEEecc
Q 026904 108 YSPEQLFD-VVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASD 177 (231)
Q Consensus 108 appeqVyd-LVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~d~p~rI~~~~~e 177 (231)
...+|+|. |+.-+++=..|+|++.+.+|++++++ .+.= ++-|++ .....++++.++.+|.+.+..
T Consensus 17 LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~-~l~R--el~f~~--~~v~e~vt~~~~~~v~f~~~~ 82 (141)
T cd08863 17 LTRAQLWRGLVLRAREPQLFVPGLDRCEVLSESGT-VLER--ELTFGP--AKIRETVTLEPPSRVHFLQAD 82 (141)
T ss_pred cCHHHHHhHHHhhhCCchhcccccceEEEEecCCC-EEEE--EEEECC--ceEEEEEEecCCcEEEEEecC
Confidence 67889986 77788888899999999999999863 3333 444454 356678999999999998855
No 71
>PF08982 DUF1857: Domain of unknown function (DUF1857); InterPro: IPR015075 This protein has no known function. It is found in various hypothetical bacterial and fungal proteins. ; PDB: 2FFS_B.
Probab=90.62 E-value=4.4 Score=33.71 Aligned_cols=66 Identities=24% Similarity=0.270 Sum_probs=43.8
Q ss_pred cCCHHHHHH-HHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEecCCCeEEEEecc
Q 026904 107 GYSPEQLFD-VVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKTTASD 177 (231)
Q Consensus 107 ~appeqVyd-LVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~d~p~rI~~~~~e 177 (231)
..+.+|||. |+.-+++=..|+|+..+.+|+++.++ .+.= ++.|++ ..+..++++.++.+|.+....
T Consensus 17 ~LTr~QlW~GL~~kar~p~~Fvp~i~~c~Vl~e~~~-~~~R--~v~fg~--~~v~E~v~~~~~~~V~f~~~~ 83 (149)
T PF08982_consen 17 VLTREQLWRGLVLKARNPQLFVPGIDSCEVLSESDT-VLTR--EVTFGG--ATVRERVTLYPPERVDFAQHD 83 (149)
T ss_dssp ---HHHHHHHHHHHHH-GGGT-TT--EEEEEEE-SS-EEEE--EEEETT--EEEEEEEEEETTTEEEESSSB
T ss_pred ccCHHHHHHHHHHHHhChhhCccccCeEEEEecCCC-eEEE--EEEECC--cEEEEEEEEeCCcEEEEEcCC
Confidence 367889986 56667777889999999999999853 4333 444455 378889999999999995544
No 72
>PLN00188 enhanced disease resistance protein (EDR2); Provisional
Probab=88.17 E-value=15 Score=38.00 Aligned_cols=115 Identities=10% Similarity=0.121 Sum_probs=70.9
Q ss_pred ccEEEEEEEEcCCHHHHHHHHHchh-cccCCCCCcceEEEEEeCCCCeEEE--EEEEcc-cCe--EEEEEEEEEecC--C
Q 026904 97 SKVYEERRVLGYSPEQLFDVVAAVD-LYHGFVPWCQRSEILKHNPDGSFDA--ELEIGF-KFL--VESYVSHVELNR--P 168 (231)
Q Consensus 97 m~~~~~s~~I~appeqVydLVaDVe-~YPeFvP~c~~srVL~r~~~g~~~A--el~Vgf-~g~--~e~ytSrv~~d~--p 168 (231)
-+.+...-+|+++|++||++|.+++ .=.+|=.-+++.+|+++-+++.... .++-++ .++ ...|.-...+.+ +
T Consensus 226 ~~~mKavGVV~aspE~Ifd~Vm~~~~~R~eWD~~~~~~~vIE~ID~htdI~Y~~~~~~~~~~~ispRDFV~~Rywrr~eD 305 (719)
T PLN00188 226 SRAMKAVGVVEATCEEIFELVMSMDGTRFEWDCSFQYGSLVEEVDGHTAILYHRLQLDWFPMFVWPRDLCYVRYWRRNDD 305 (719)
T ss_pred CceeEEEEEecCCHHHHHHHHhccCcccccchhcccceEEEEEecCCeEEEEEEeccccccCccCcceeEEEEEEEEcCC
Confidence 4788999999999999999999888 5567889999999999876544332 222222 111 122222111211 1
Q ss_pred C--eEEEEeccc-------cccc--ceeeEEEEeeCCC---CCceEEEEEEEEEeCC
Q 026904 169 K--FVKTTASDS-------SLFD--HLINIWEFNPGPS---PGTCNLYFLVDFKFHS 211 (231)
Q Consensus 169 ~--rI~~~~~es-------g~Fk--~L~G~W~f~p~~~---~~~T~V~f~ldFef~s 211 (231)
. .|...+++. |-.+ ..-|.|.+.|++. ...|.|..-+..+++.
T Consensus 306 GsYvil~~Sv~Hp~cPP~kG~VRg~~~pGGwiIsPL~~~~g~~r~lv~~~lqtDlkG 362 (719)
T PLN00188 306 GSYVVLFRSREHENCGPQPGFVRAHLESGGFNISPLKPRNGRPRTQVQHLMQIDLKG 362 (719)
T ss_pred CcEEEeeeeeecCCCCCCCCeEEEEEeCCEEEEEECCCCCCCCceEEEEEEEEccCc
Confidence 1 222222111 1111 1237899999642 2479999999999987
No 73
>PF11687 DUF3284: Domain of unknown function (DUF3284); InterPro: IPR021701 This family of proteins with unknown function appears to be restricted to Firmicutes.
Probab=88.15 E-value=12 Score=29.78 Aligned_cols=104 Identities=16% Similarity=0.172 Sum_probs=57.9
Q ss_pred EEEEEcCCHHHHHHHHHc-----hhcccCCCCCc---ceEEEEEeCCCCeEEEEEEEcccCeEEEEEEEEEecCCCeEEE
Q 026904 102 ERRVLGYSPEQLFDVVAA-----VDLYHGFVPWC---QRSEILKHNPDGSFDAELEIGFKFLVESYVSHVELNRPKFVKT 173 (231)
Q Consensus 102 ~s~~I~appeqVydLVaD-----Ve~YPeFvP~c---~~srVL~r~~~g~~~Ael~Vgf~g~~e~ytSrv~~d~p~rI~~ 173 (231)
.++.+++|++++|+.+.| ++..-.=-+.. ..-+-.+.-+++. ++.++ ...+.+|..=.+
T Consensus 3 I~~~l~v~a~~ff~~l~~s~~~DI~~~tgk~~~~~~L~G~~Y~K~~~~~~-~~~v~------------It~~~~~~~Y~~ 69 (120)
T PF11687_consen 3 ISKTLNVSAEEFFDYLIDSLLYDIKQATGKKLPVKQLKGFSYQKKFKNKR-EAKVK------------ITEYEPNKRYAA 69 (120)
T ss_pred EEEEecCCHHHHHHHHHHHHHHHHHHHcCCCCChhhcCCcEEEEEcCCCC-EEEEE------------EEEEcCCCEEEE
Confidence 467799999999997754 44332211110 1111122211111 22222 335566663333
Q ss_pred EecccccccceeeEEEEeeCCCCCceEEEEEEEEEeCC---hHHHHHHHHH
Q 026904 174 TASDSSLFDHLINIWEFNPGPSPGTCNLYFLVDFKFHS---PLYRQVMVLH 221 (231)
Q Consensus 174 ~~~esg~Fk~L~G~W~f~p~~~~~~T~V~f~ldFef~s---pL~~~la~~~ 221 (231)
.. . .+.....-.|+++|.+ ++.|+|+|+=+++-.+ .+..++.+.+
T Consensus 70 ~~-~-s~~~~~~i~Y~i~~~~-~~~~~v~y~E~~~~~~~~~~~n~~l~~~~ 117 (120)
T PF11687_consen 70 TF-S-SSRGTFTISYEIEPLD-DGSIEVTYEEEYESKGFFQKLNNKLMGFF 117 (120)
T ss_pred EE-E-ecCCCEEEEEEEEECC-CCcEEEEEEEEEccCCHHHHHHHHHHHHh
Confidence 32 1 2335578899999994 5679999999999544 5555555543
No 74
>cd08875 START_ArGLABRA2_like C-terminal lipid-binding START domain of the Arabidopsis homeobox protein GLABRA 2 and related proteins. This subfamily includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of the Arabidopsis homeobox protein GLABRA 2 and related proteins. The START domain family belongs to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Most proteins in this subgroup contain an N-terminal homeobox DNA-binding domain, some contain a leucine zipper. ArGLABRA2 plays a role in the differentiation of hairless epidermal cells of the Arabidopsis root. It acts in a cell-position-dependent manner to suppress root hair formation in those cells.
Probab=88.05 E-value=12 Score=33.38 Aligned_cols=114 Identities=12% Similarity=0.122 Sum_probs=74.8
Q ss_pred ccEEEEEEEEcCCHHHHHHHHHchhcccC-CCCCcceEEEEEeCCC-------Ce---EEEEEEEccc--CeEEEEEEEE
Q 026904 97 SKVYEERRVLGYSPEQLFDVVAAVDLYHG-FVPWCQRSEILKHNPD-------GS---FDAELEIGFK--FLVESYVSHV 163 (231)
Q Consensus 97 m~~~~~s~~I~appeqVydLVaDVe~YPe-FvP~c~~srVL~r~~~-------g~---~~Ael~Vgf~--g~~e~ytSrv 163 (231)
...-+++.+|...+..+-+++.|.++|.+ |=.-|.++++++.-.. |. +-+|+.+=.. .-+|-|..|+
T Consensus 59 ~eASR~~glV~m~~~~lVe~lmD~~kW~~~Fp~iv~~a~tl~vistg~~g~~~G~lqlmyael~~pSpLVp~Re~~fLRy 138 (229)
T cd08875 59 TEASRACGLVMMNAIKLVEILMDVNKWSELFPGIVSKAKTLQVISTGNGGNRNGTLQLMYAELQVPSPLVPTREFYFLRY 138 (229)
T ss_pred EEEEeeeEEEecCHHHHHHHHhChhhhhhhhhhhcceeeEEEEeeCCCCCCCCceehhhhhhcccCcccccCCeEEEEEE
Confidence 34567788899999999999999999999 6567888888874221 21 4555554322 3477777777
Q ss_pred EecCCC--eEEEE-ecccc---cc-------cceeeEEEEeeCCCCCceEEEEEEEEEeCC
Q 026904 164 ELNRPK--FVKTT-ASDSS---LF-------DHLINIWEFNPGPSPGTCNLYFLVDFKFHS 211 (231)
Q Consensus 164 ~~d~p~--rI~~~-~~esg---~F-------k~L~G~W~f~p~~~~~~T~V~f~ldFef~s 211 (231)
...-.+ .+.+. +.++. +. +.+-.-|-+.|.+ +|.|+|+.--+.|...
T Consensus 139 c~~l~dG~w~VvdvSld~~~~~p~~~~~~r~~~~PSGcLIq~~~-nG~SkVtwVeH~e~d~ 198 (229)
T cd08875 139 CKQLEDGLWAVVDVSIDGVQTAPPPASFVRCRRLPSGCLIQDMP-NGYSKVTWVEHVEVDE 198 (229)
T ss_pred EEEeCCCeEEEEEEeecccccCCCCCCccEEEEecCcEEEEECC-CCceEEEEEEEEeccC
Confidence 654333 32222 22321 12 2333557788885 4789999988888665
No 75
>KOG2761 consensus START domain-containing proteins involved in steroidogenesis/phosphatidylcholine transfer [Lipid transport and metabolism]
Probab=87.40 E-value=21 Score=31.85 Aligned_cols=126 Identities=16% Similarity=0.171 Sum_probs=88.1
Q ss_pred ccEEEEEEEEc-CCHHHHHHHHHchhcccCCCCCcceEEEEEeCC-CCeEEEEEEEcccCe--EEEEE-EEEEecCC-C-
Q 026904 97 SKVYEERRVLG-YSPEQLFDVVAAVDLYHGFVPWCQRSEILKHNP-DGSFDAELEIGFKFL--VESYV-SHVELNRP-K- 169 (231)
Q Consensus 97 m~~~~~s~~I~-appeqVydLVaDVe~YPeFvP~c~~srVL~r~~-~g~~~Ael~Vgf~g~--~e~yt-Srv~~d~p-~- 169 (231)
+..|....++. ++|+.++|+..|-|-=++|=-.....+.+++++ .|.....|...|... ...|+ .|..++-. +
T Consensus 52 ~~~Yk~~~vfeDvtp~~~~Dv~~D~eYRkkWD~~vi~~e~ie~d~~tg~~vv~w~~kfP~p~~~RdYV~~Rr~~~~~~k~ 131 (219)
T KOG2761|consen 52 LYEYKSRTVFEDVTPEIVRDVQWDDEYRKKWDDMVIELETIEEDPVTGTEVVYWVKKFPFPMSNRDYVYVRRWWESDEKD 131 (219)
T ss_pred CEEEEEEEEEcCCCHHHHHHHHhhhHHHHHHHHHhhhheeeeecCCCCceEEEEEEeCCcccCCccEEEEEEEEecCCce
Confidence 56777777765 999999999999999999999999999999986 245577777777732 33344 44444433 2
Q ss_pred e-EEEEeccc---cc------ccceeeEEEEe-eC--CCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 170 F-VKTTASDS---SL------FDHLINIWEFN-PG--PSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 170 r-I~~~~~es---g~------Fk~L~G~W~f~-p~--~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
. |....++. ++ -......|.+. +. +++.+|.+.+..--..+.+++..+++..+
T Consensus 132 ~~i~s~~v~h~s~P~~~~~vRv~~~~s~~~I~~~~~~~~~~~~~~~~~~~~~p~~~iP~~~v~~~~ 197 (219)
T KOG2761|consen 132 YYIVSKSVQHPSYPPLKKKVRVTVYRSGWLIRVESRSGDEQGCACEYLYFHNPGGGIPKWVVKLAV 197 (219)
T ss_pred EEEEEecccCCCcCCcCCcEEEEEEEEEEEEEcccccCCCCccEEEEEEEECCCCCCcHHHHHHHH
Confidence 1 22222111 11 12355778887 21 12467999999989999999999999887
No 76
>cd08864 SRPBCC_DUF3074 DUF3074, an uncharacterized ligand-binding domain of the SRPBCC domain superfamily. Uncharacterized family of the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily. SRPBCC domains have a deep hydrophobic ligand-binding pocket and they bind diverse ligands. SRPBCC domains include the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of mammalian STARD1-STARD15, the C-terminal catalytic domains of the alpha oxygenase subunit of Rieske-type non-heme iron aromatic ring-hydroxylating oxygenases (RHOs_alpha_C), Class I and II phosphatidylinositol transfer proteins (PITPs), Bet v 1 (the major pollen allergen of white birch, Betula verrucosa), CoxG, CalC, and related proteins. Other members of the superfamily include PYR/PYL/RCAR plant proteins, the aromatase/cyclase (ARO/CYC) domains of proteins such as Streptomyces glaucescens tetracenomycin, and the SRPBCC domains of Streptococcus mutans Smu.440 and related proteins
Probab=83.25 E-value=14 Score=32.18 Aligned_cols=98 Identities=11% Similarity=0.107 Sum_probs=64.7
Q ss_pred CCCCCcc--eEEEEEeCCCCe----EEEEEEEcccC--eEEEEEEEEE-e-cCC--C-eEEEEe--ccc-cc--------
Q 026904 125 GFVPWCQ--RSEILKHNPDGS----FDAELEIGFKF--LVESYVSHVE-L-NRP--K-FVKTTA--SDS-SL-------- 180 (231)
Q Consensus 125 eFvP~c~--~srVL~r~~~g~----~~Ael~Vgf~g--~~e~ytSrv~-~-d~p--~-rI~~~~--~es-g~-------- 180 (231)
+|+|.|. ++++++..+++. ....+...+.. -...|++... . +.+ + .|.++. ... -|
T Consensus 67 ~~i~~v~~~~~~~l~~~~~~~~~~~~v~~~~~~~P~Pl~~Rdfv~l~~~~~~~~~~~~~i~vs~p~~~~~~p~~~~~~Vr 146 (208)
T cd08864 67 EYVHEIGAYDLEPVEVDGEGDGVVTYLVQLTYKFPFPLSPRVFNELVHIKSDLDPASEFMVVSLPITPPLVESLYENAVL 146 (208)
T ss_pred hchhhhccceeEEeeecCCCccceEEEEEEEEECCCCCCCcEEEEEEEeeccCCCCCeEEEEEEEecCCcCCccCCCcEE
Confidence 9999999 899999876444 34555566553 3555666655 2 222 3 343333 111 11
Q ss_pred ccceee-EEEEeeCCCCCceEEEEEE--EEEeCChHHHHHHHHHH
Q 026904 181 FDHLIN-IWEFNPGPSPGTCNLYFLV--DFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 181 Fk~L~G-~W~f~p~~~~~~T~V~f~l--dFef~spL~~~la~~~~ 222 (231)
-.+..| .|++.|...++.++|++.+ .-+.+.-+++++.+...
T Consensus 147 ~~y~SgE~~~~~p~~~~~~~~vew~maT~sDpGG~IP~wl~n~~~ 191 (208)
T cd08864 147 GRYASVEKISYLPDADGKSNKVEWIMATRSDAGGNIPRWLTKLTI 191 (208)
T ss_pred EEEEEEEEEEEcCccCCCcCCEEEEEEEeeCCCCcCcHHHHhccC
Confidence 245678 9999987313567899999 99999999999999764
No 77
>cd08907 START_STARD8-like C-terminal lipid-binding START domain of mammalian STARD8 and related proteins, which also have an N-terminal Rho GTPase-activating protein (RhoGAP) domain. This subgroup includes the steroidogenic acute regulatory protein (StAR)-related lipid transfer (START) domains of STARD8 (also known as deleted in liver cancer 3/DLC3, and Arhgap38) and related proteins. It belongs to the START domain family, and in turn to the SRPBCC (START/RHO_alpha_C/PITP/Bet_v1/CoxG/CalC) domain superfamily of proteins that bind hydrophobic ligands. SRPBCC domains have a deep hydrophobic ligand-binding pocket. Proteins belonging to this subfamily also have a RhoGAP domain. The precise function of the START domain in this subgroup is unclear.
Probab=70.39 E-value=76 Score=27.97 Aligned_cols=123 Identities=8% Similarity=-0.041 Sum_probs=75.1
Q ss_pred ccccEEEEEEEEcCC-HHHHHHHHHchhcccCCCCCcceEEEEEeCCCCeEEEEEEEcc-cC-eEEEEEEEEEe---cCC
Q 026904 95 VLSKVYEERRVLGYS-PEQLFDVVAAVDLYHGFVPWCQRSEILKHNPDGSFDAELEIGF-KF-LVESYVSHVEL---NRP 168 (231)
Q Consensus 95 ~~m~~~~~s~~I~ap-peqVydLVaDVe~YPeFvP~c~~srVL~r~~~g~~~Ael~Vgf-~g-~~e~ytSrv~~---d~p 168 (231)
...+..+.+..++++ ++-+|++|.| =..|=+...+++++++-+++.-...-.+.. .+ -...|.....| .+.
T Consensus 49 ~~l~lwk~s~ei~~~p~~vl~rvL~d---R~~WD~~m~e~~~Ie~Ld~n~dI~yY~~~~~~p~p~RDfv~lRsW~~~l~~ 125 (205)
T cd08907 49 HPLRLWKVSTEVEAPPSVVLQRVLRE---RHLWDEDLLHSQVIEALENNTEVYHYVTDSMAPHPRRDFVVLRMWRSDLPR 125 (205)
T ss_pred CceEEEEEEEEecCCCHHHHHHHhhc---hhhhhHHHHhhhhheeecCCCEEEEEEecCCCCCCCceEEEEEEEccCCCC
Confidence 467888999998855 5556889999 556777777777777643222122222321 11 24455555545 221
Q ss_pred -CeEEEE-eccc--ccc------cceeeEEEEeeCCCCCceEEEEEEEEEeCChHHHHHHHHHH
Q 026904 169 -KFVKTT-ASDS--SLF------DHLINIWEFNPGPSPGTCNLYFLVDFKFHSPLYRQVMVLHL 222 (231)
Q Consensus 169 -~rI~~~-~~es--g~F------k~L~G~W~f~p~~~~~~T~V~f~ldFef~spL~~~la~~~~ 222 (231)
..|.+. +++. .|+ ..+...+-++|.+ +++|+|++--..+++..++.+. +.++
T Consensus 126 g~~iI~~~SV~H~~~pp~~gVRa~~l~sgYlIep~g-~g~s~ltyi~rvD~rG~~P~Wy-nk~~ 187 (205)
T cd08907 126 GGCLLVSQSVDHDNPQLEAGVRAVLLTSQYLIEPCG-MGRSRLTHICRADLRGRSPDWY-NKVF 187 (205)
T ss_pred CCEEEEEecccCCcCCCCCCeEEEEEeccEEEEECC-CCCeEEEEEEEeCCCCCCcHHH-HHhH
Confidence 222222 2211 122 2245667788984 6899999999999999999999 5553
No 78
>PF02974 Inh: Protease inhibitor Inh; InterPro: IPR021140 This entry represents the metalloprotease inhibitor I38, as well as the outer membrane lipoprotein Omp19. Peptide proteinase inhibitors can be found as single domain proteins or as single or multiple domains within proteins; these are referred to as either simple or compound inhibitors, respectively. In many cases they are synthesised as part of a larger precursor protein, either as a prepropeptide or as an N-terminal domain associated with an inactive peptidase or zymogen. This domain prevents access of the substrate to the active site. Removal of the N-terminal inhibitor domain either by interaction with a second peptidase or by autocatalytic cleavage activates the zymogen. Other inhibitors interact direct with proteinases using a simple noncovalent lock and key mechanism; while yet others use a conformational change-based trapping mechanism that depends on their structural and thermodynamic properties. This family of proteins represent monomeric serralysin inhibitors of about 125 residues, which interact with specific metalloprotease which are synthesised by serralysin secretors and characterised by being plant, insect and animal pathogens. It is probable that the serralysin inhibitors protect the host from proteolysis during export of the protease. The members of this family belong to MEROPS proteinase inhibitor family I38, clan IK. X-ray crystallography of a complex between the Serratia marcescens protease, SmaPI, and the inhibitor of Erwinia chrysanthemi, Inh, reveals that Inh is folded into an eight-stranded b-barrel with an N-terminal trunk of 10 residues. Residues 1-5 occupy part of the extended active site of the proteinase, thereby preventing access of the substrate. Residues 6-10 form a linker that connects the N-terminal proteinase-binding peptide to the body of the b-barrel. The backbone carbonyl of Ser-1 interacts with the catalytic zinc; the Ser-2 side chain occupies the S1'-binding site and also forms a hydrogen bond to the carboxyl end of the catalytic Glu, whereas Leu-3 occupies the S2' recognition site. Penetration of the trunk region further than 5 residues into the substrate binding cleft appears to be prevented by the b-barrel, which itself interacts with the proteinase near its Met turn (19). Peptide mimetics of the trunk at concentrations up to about 100 mM do not inhibit the protease, demonstrating that the barrel is essential for inhibitory activity [, ]. Structurally and functionally these inhibitors are closely related to the lipocalins, fatty acid-binding proteins, avidins and the enigmatic triabin. Together these five protein families constitute the calycin superfamily []. The proteins are characterised by their high specificity for small hydrophobic molecules and by their ability to form complexes with soluble macromolecules either through intramolecular disulphides or protein-protein interactions []. ; PDB: 1JIW_I 2RN4_A 1SMP_I.
Probab=25.06 E-value=86 Score=23.94 Aligned_cols=25 Identities=16% Similarity=0.395 Sum_probs=18.4
Q ss_pred ccceeeEEEEeeCCCCCceEEEEEEEE
Q 026904 181 FDHLINIWEFNPGPSPGTCNLYFLVDF 207 (231)
Q Consensus 181 Fk~L~G~W~f~p~~~~~~T~V~f~ldF 207 (231)
...|.|.|++... ...|+|++..+=
T Consensus 9 ~~~l~G~W~l~~~--~~~C~v~L~~~~ 33 (99)
T PF02974_consen 9 PASLAGQWQLSDG--GKSCRVTLTTTP 33 (99)
T ss_dssp HHCC-EEEEEETS--S-EEEEEEEEEE
T ss_pred hHHceEeeEEecC--CCceEEEeCCCc
Confidence 3678999999943 478999998865
No 79
>PF02713 DUF220: Domain of unknown function DUF220; InterPro: IPR003863 This entry consists of several Arabidopsis thaliana hypothetical proteins, none of which have any known function. They contain a conserved region with two cysteine residues.
Probab=24.77 E-value=32 Score=25.60 Aligned_cols=24 Identities=13% Similarity=0.217 Sum_probs=17.4
Q ss_pred EEEEecccccccceeeEEEEeeCC
Q 026904 171 VKTTASDSSLFDHLINIWEFNPGP 194 (231)
Q Consensus 171 I~~~~~esg~Fk~L~G~W~f~p~~ 194 (231)
..+....-+-.+.++|+|+++|+-
T Consensus 20 ~kykk~K~~fMK~FEGswKVeply 43 (74)
T PF02713_consen 20 AKYKKEKMMFMKVFEGSWKVEPLY 43 (74)
T ss_pred HHHhhhheeeeeeecceeEEEeeE
Confidence 344444457778899999999963
No 80
>PLN00095 chlorophyllide a oxygenase; Provisional
Probab=21.36 E-value=7.6e+02 Score=23.99 Aligned_cols=108 Identities=15% Similarity=0.143 Sum_probs=57.5
Q ss_pred EEEEcCCHHHHHHHHHchhcccCCCCCcceEEEE-EeCCCCeEEEEEE-EcccCeEE---EEEEEEEecCCCeEEEEe--
Q 026904 103 RRVLGYSPEQLFDVVAAVDLYHGFVPWCQRSEIL-KHNPDGSFDAELE-IGFKFLVE---SYVSHVELNRPKFVKTTA-- 175 (231)
Q Consensus 103 s~~I~appeqVydLVaDVe~YPeFvP~c~~srVL-~r~~~g~~~Ael~-Vgf~g~~e---~ytSrv~~d~p~rI~~~~-- 175 (231)
.+.+||.-..+.+=+.|..+--.|-+..+..... ++..+-.+.++.+ ...+++.. -|-...++.+|-.+....
T Consensus 222 ~~Dlp~d~~~L~ENllD~aH~a~~~~t~tf~~~~~~r~~~~~~~~~~~~~~~~~l~g~~~~~p~~~~F~ppc~~~s~i~l 301 (394)
T PLN00095 222 IADIKLDADEVLERLLAIGERARREATVSFDVSDAKRGRDALFPVDGTKIIAKVLRGGRDAVPQSATFKPACVIASTIAL 301 (394)
T ss_pred EEeccccHHHHHHhhcCccccCCccCceeeecccccccccCccchhhhhhhhhhheeecccCCcceeEcCceeeeeeecc
Confidence 4679999999999999999965555543332111 1111000110000 11122222 244556777777544332
Q ss_pred --cccccc---cceeeEEEEeeCCCCCceEEEEEEEEEeCC
Q 026904 176 --SDSSLF---DHLINIWEFNPGPSPGTCNLYFLVDFKFHS 211 (231)
Q Consensus 176 --~esg~F---k~L~G~W~f~p~~~~~~T~V~f~ldFef~s 211 (231)
-.++.. +++..-=-.-|. ++|.|++-|.+.++|..
T Consensus 302 ~~~~g~~~~~~~~l~qlhvclP~-~~G~tRll~R~~~dF~~ 341 (394)
T PLN00095 302 EDGPGGGDGTDMNVEQLHVCLPA-KPGLCRLLFRLAFDFVA 341 (394)
T ss_pred cccCCCCccccceeeeEEEEEec-CCCceEEEEeecccccc
Confidence 122222 232222223455 47899999999999974
Done!