BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 026906
(231 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1S57|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S57|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase 2 From
Arabidopsis
pdb|1S59|A Chain A, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|B Chain B, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|C Chain C, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|D Chain D, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|E Chain E, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
pdb|1S59|F Chain F, Structure Of Nucleoside Diphosphate Kinase 2 With Bound
Dgtp From Arabidopsis
Length = 153
Score = 264 bits (674), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 125/153 (81%), Positives = 132/153 (86%)
Query: 79 SMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKP 138
SME VEETYIMVKPDG+QRGLVG+IISRFE QCPK+LAEEHYKDL++K
Sbjct: 1 SMEDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKS 60
Query: 139 FFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHG 198
FFP LIEYITSGPVVCMAWEG GVVASARKLIG TDPLQAEPGTIRGDLAVQTGRN+VHG
Sbjct: 61 FFPNLIEYITSGPVVCMAWEGVGVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHG 120
Query: 199 SDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231
SDSPENGKREIGLWFKEGELC+W A A WLRE
Sbjct: 121 SDSPENGKREIGLWFKEGELCKWDSALATWLRE 153
>pdb|1PKU|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|G Chain G, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|H Chain H, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|I Chain I, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|J Chain J, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|K Chain K, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
pdb|1PKU|L Chain L, Crystal Structure Of Nucleoside Diphosphate Kinase From
Rice
Length = 150
Score = 182 bits (461), Expect = 2e-46, Method: Compositional matrix adjust.
Identities = 83/150 (55%), Positives = 106/150 (70%), Gaps = 1/150 (0%)
Query: 82 QVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFP 141
++E+++IM+KPDGVQRGL+GDIISRFE + A++HY DL+ KPFFP
Sbjct: 1 RMEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFP 60
Query: 142 KLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 201
L+EYI SGPVV M WEG VVA+ R++IG+T P +A PGTIR D AV+ GRNV+HGSDS
Sbjct: 61 GLVEYIISGPVVAMVWEGKDVVATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDS 120
Query: 202 PENGKREIGLWFKEGELCQWTPAQAQWLRE 231
+NGK+EI LWF EG L +W W+ E
Sbjct: 121 VDNGKKEIALWFPEG-LAEWRSNLHPWIYE 149
>pdb|1NDL|A Chain A, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|B Chain B, The Awd Nucleotide Diphosphate Kinase From Drosophila
pdb|1NDL|C Chain C, The Awd Nucleotide Diphosphate Kinase From Drosophila
Length = 153
Score = 179 bits (454), Expect = 1e-45, Method: Compositional matrix adjust.
Identities = 79/148 (53%), Positives = 102/148 (68%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T+IMVKPDGVQRGLVG II RFE K+L E+HY DL+++PFFP L
Sbjct: 6 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGL 65
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ Y+ SGPVV M WEG VV + R+++G+T+P + PGTIRGD +Q GRN++HGSD+ E
Sbjct: 66 VNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIHGSDAVE 125
Query: 204 NGKREIGLWFKEGELCQWTPAQAQWLRE 231
+ ++EI LWF E EL WTPA W+ E
Sbjct: 126 SAEKEIALWFNEKELVTWTPAAKDWIYE 153
>pdb|1NSQ|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|B Chain B, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
pdb|1NSQ|C Chain C, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 153
Score = 176 bits (445), Expect = 1e-44, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 101/148 (68%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T+IMVKPDGVQRGLVG II RFE K+L E+HY DL+++PFFP L
Sbjct: 6 ERTFIMVKPDGVQRGLVGKIIERFEQKGFKLVALKFTWASKELLEKHYADLSARPFFPGL 65
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ Y+ SGPVV M WEG VV + R+++G+T+P + PGTIRGD +Q GRN++ GSD+ E
Sbjct: 66 VNYMNSGPVVPMVWEGLNVVKTGRQMLGATNPADSLPGTIRGDFCIQVGRNIIXGSDAVE 125
Query: 204 NGKREIGLWFKEGELCQWTPAQAQWLRE 231
+ ++EI LWF E EL WTPA W+ E
Sbjct: 126 SAEKEIALWFNEKELVTWTPAAKDWIYE 153
>pdb|3NGR|A Chain A, Crystal Structure Of Leishmania Nucleoside Diphosphate
Kinase B With Unordered Nucleotide-Binding Loop.
pdb|3NGS|A Chain A, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|B Chain B, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGS|C Chain C, Structure Of Leishmania Nucleoside Diphosphate Kinase B
With Ordered Nucleotide-Binding Loop
pdb|3NGT|A Chain A, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|B Chain B, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|C Chain C, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|D Chain D, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|E Chain E, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|F Chain F, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|G Chain G, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|H Chain H, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|I Chain I, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|J Chain J, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|K Chain K, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|L Chain L, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|M Chain M, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGT|N Chain N, Structure Of Leishmania Ndkb Complexed With Amp.
pdb|3NGU|A Chain A, Structure Of Leishmania Ndkb Complexed With Adp.
pdb|3NGU|B Chain B, Structure Of Leishmania Ndkb Complexed With Adp
Length = 151
Score = 174 bits (442), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 80/139 (57%), Positives = 97/139 (69%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T+I VKPDGVQRGLVG+II+RFE Q + A+ HYKDL SKPFFP L
Sbjct: 4 ERTFIAVKPDGVQRGLVGEIIARFERKGYKLVALKILQPTTEQAQGHYKDLCSKPFFPAL 63
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
++Y +SGP+VCM WEG VV S R L+G+T+P ++PGTIRGD AV GRNV HGSDS E
Sbjct: 64 VKYFSSGPIVCMVWEGKNVVKSGRVLLGATNPADSQPGTIRGDFAVDVGRNVCHGSDSVE 123
Query: 204 NGKREIGLWFKEGELCQWT 222
+ +REI WFK E+ WT
Sbjct: 124 SAEREIAFWFKADEIASWT 142
>pdb|1JXV|A Chain A, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|B Chain B, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|C Chain C, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|D Chain D, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|E Chain E, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|1JXV|F Chain F, Crystal Structure Of Human Nucleoside Diphosphate Kinase A
pdb|2HVD|A Chain A, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|B Chain B, Human Nucleoside Diphosphate Kinase A Complexed With Adp
pdb|2HVD|C Chain C, Human Nucleoside Diphosphate Kinase A Complexed With Adp
Length = 152
Score = 169 bits (427), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/152 (50%), Positives = 99/152 (65%)
Query: 80 MEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPF 139
M E T+I +KPDGVQRGLVG+II RFE Q +DL +EHY DL +PF
Sbjct: 1 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPF 60
Query: 140 FPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGS 199
F L++Y+ SGPVV M WEG VV + R ++G T+P ++PGTIRGD +Q GRN++HGS
Sbjct: 61 FAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 200 DSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231
DS E+ ++EIGLWF EL +T W+ E
Sbjct: 121 DSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>pdb|3L7U|A Chain A, Crystal Structure Of Human Nm23-H1
pdb|3L7U|B Chain B, Crystal Structure Of Human Nm23-H1
pdb|3L7U|C Chain C, Crystal Structure Of Human Nm23-H1
Length = 172
Score = 168 bits (426), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 76/154 (49%), Positives = 100/154 (64%)
Query: 78 ASMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSK 137
+ M E T+I +KPDGVQRGLVG+II RFE Q +DL +EHY DL +
Sbjct: 19 SHMANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDR 78
Query: 138 PFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVH 197
PFF L++Y+ SGPVV M WEG VV + R ++G T+P ++PGTIRGD +Q GRN++H
Sbjct: 79 PFFAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIH 138
Query: 198 GSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231
GSDS E+ ++EIGLWF EL +T W+ E
Sbjct: 139 GSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 172
>pdb|1U8W|A Chain A, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|B Chain B, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|C Chain C, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|D Chain D, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|E Chain E, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
pdb|1U8W|F Chain F, Crystal Structure Of Arabidopsis Thaliana Nucleoside
Diphosphate Kinase 1
Length = 149
Score = 168 bits (425), Expect = 3e-42, Method: Compositional matrix adjust.
Identities = 76/149 (51%), Positives = 103/149 (69%), Gaps = 1/149 (0%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPK 142
+E+T+IM+KPDGVQRGL+G++I RFE + AE+HY+DL+SK FF
Sbjct: 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSG 60
Query: 143 LIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSP 202
L++YI SGPVV M WEG VV + RK+IG+T+P +EPGTIRGD A+ GRNV+HGSDS
Sbjct: 61 LVDYIVSGPVVAMIWEGKNVVLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSV 120
Query: 203 ENGKREIGLWFKEGELCQWTPAQAQWLRE 231
E+ ++EI LWF +G + W + W+ E
Sbjct: 121 ESARKEIALWFPDGPV-NWQSSVHPWVYE 148
>pdb|1W7W|A Chain A, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|B Chain B, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|C Chain C, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|D Chain D, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|E Chain E, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization.
pdb|1W7W|F Chain F, Structure And Mutational Analysis Of A Plant Mitochondrial
Nucleoside Diphosphate Kinase: Identification Of
Residues Involved In Serine Phosphorylation And
Oligomerization
Length = 182
Score = 167 bits (423), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 76/148 (51%), Positives = 99/148 (66%)
Query: 82 QVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFP 141
++E T+I +KPDGVQRGL+ +IISRFE K A++HY DL +PFF
Sbjct: 31 ELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFN 90
Query: 142 KLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 201
L ++++SGPV+ M WEG GV+ RKLIG+TDP ++ PGTIRGDLAV GRN++HGSD
Sbjct: 91 GLCDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDG 150
Query: 202 PENGKREIGLWFKEGELCQWTPAQAQWL 229
PE K EI LWFK EL +T +W+
Sbjct: 151 PETAKDEIKLWFKPEELVSFTSNSEKWI 178
>pdb|2HVE|A Chain A, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|B Chain B, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
pdb|2HVE|C Chain C, S120g Mutant Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp
Length = 152
Score = 167 bits (422), Expect = 6e-42, Method: Compositional matrix adjust.
Identities = 75/152 (49%), Positives = 98/152 (64%)
Query: 80 MEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPF 139
M E T+I +KPDGVQRGLVG+II RFE Q +DL +EHY DL +PF
Sbjct: 1 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPF 60
Query: 140 FPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGS 199
F L++Y+ SGPVV M WEG VV + R ++G T+P ++PGTIRGD +Q GRN++HG
Sbjct: 61 FAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGG 120
Query: 200 DSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231
DS E+ ++EIGLWF EL +T W+ E
Sbjct: 121 DSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>pdb|1EHW|A Chain A, Human Nucleoside Diphosphate Kinase 4
pdb|1EHW|B Chain B, Human Nucleoside Diphosphate Kinase 4
Length = 162
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 74/138 (53%), Positives = 90/138 (65%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T + VKPDGVQR LVGD+I RFE Q P+ + EHY+DL KPF+P L
Sbjct: 25 ERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPAL 84
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
I Y++SGPVV M WEG VV ++R +IG TD +A PGTIRGD +V RNV+H SDS E
Sbjct: 85 IRYMSSGPVVAMVWEGYNVVRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVE 144
Query: 204 NGKREIGLWFKEGELCQW 221
+REI LWF+ EL W
Sbjct: 145 GAQREIQLWFQSSELVSW 162
>pdb|2ZUA|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
pdb|2ZUA|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase From
Haloarcula Quadrata
Length = 174
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 76/156 (48%), Positives = 98/156 (62%), Gaps = 2/156 (1%)
Query: 78 ASMEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSK 137
+ M + E T++MVKPDGVQRGL+GDI+SRFE Q ++LAEEHY + K
Sbjct: 19 SHMSEHERTFVMVKPDGVQRGLIGDIVSRFEDRGLKMVGGKFMQIDQELAEEHYGEHEDK 78
Query: 138 PFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVH 197
PFF L+++ITSGPV M WEG R ++G TDP ++ PGTIRGD + GRNV+H
Sbjct: 79 PFFDGLVDFITSGPVFAMVWEGQDATRQVRTMMGETDPAESAPGTIRGDYGLDLGRNVIH 138
Query: 198 GSDSPENG--KREIGLWFKEGELCQWTPAQAQWLRE 231
GSD + G +REI L+F E EL W + WL E
Sbjct: 139 GSDHEDEGANEREIELFFDEDELVDWDQIDSSWLYE 174
>pdb|1BHN|A Chain A, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|B Chain B, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|C Chain C, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|D Chain D, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|E Chain E, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
pdb|1BHN|F Chain F, Nucleoside Diphosphate Kinase Isoform A From Bovine Retina
Length = 152
Score = 163 bits (413), Expect = 6e-41, Method: Compositional matrix adjust.
Identities = 72/152 (47%), Positives = 97/152 (63%)
Query: 80 MEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPF 139
M E T+I +KPDGVQRGL+G+II RFE + +DL +EHY DL +PF
Sbjct: 1 MANSERTFIAIKPDGVQRGLIGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPF 60
Query: 140 FPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGS 199
F L++Y+ SGPVV M WEG VV + R ++G T+P ++PGTIRGD +Q GRN++HGS
Sbjct: 61 FAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 200 DSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231
DS E+ ++EI LWF EL + W+ E
Sbjct: 121 DSVESAEKEIALWFHPEELVNYKSCAQNWIYE 152
>pdb|1BE4|A Chain A, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|B Chain B, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
pdb|1BE4|C Chain C, Nucleoside Diphosphate Kinase Isoform B From Bovine Retina
Length = 151
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 97/148 (65%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T+I +KPDGVQRGL+G+II RFE + +DL +EHY DL +PFF L
Sbjct: 4 ERTFIAIKPDGVQRGLMGEIIKRFEQKGFRLVAMKFMRASEDLLKEHYIDLKDRPFFAGL 63
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
++Y+ SGPVV M WEG VV + R ++G T+P ++PGTIRGD +Q GRN++HGSDS E
Sbjct: 64 VKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVE 123
Query: 204 NGKREIGLWFKEGELCQWTPAQAQWLRE 231
+ ++EI LWF+ EL + W+ E
Sbjct: 124 SAEKEIALWFRPEELVNYKSCAQNWIYE 151
>pdb|4FKX|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKX|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Cdp
pdb|4FKY|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
pdb|4FKY|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei Bound To Gtp
Length = 161
Score = 162 bits (411), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 95/148 (64%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T+I VKPDGVQR LVG+II RFE Q ++ A++HY DL SKPF+ L
Sbjct: 12 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 71
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ Y +SGP+V M WEG GVV R L+G+T+P + PGTIRGD AV GRNV HGSDS E
Sbjct: 72 VSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVE 131
Query: 204 NGKREIGLWFKEGELCQWTPAQAQWLRE 231
+ KREI WFK EL WT + + E
Sbjct: 132 SAKREIAFWFKAEELVSWTSHSVKQIYE 159
>pdb|3B54|A Chain A, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
pdb|3B54|B Chain B, Saccharomyces Cerevisiae Nucleoside Diphosphate Kinase
Length = 161
Score = 162 bits (410), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 73/150 (48%), Positives = 96/150 (64%)
Query: 82 QVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFP 141
Q E T+I VKPDGVQRGLV I+SRFE + L E+HY + KPFFP
Sbjct: 12 QTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFP 71
Query: 142 KLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 201
K++ ++ SGP++ WEG VV R ++G+T+PL + PGTIRGD + GRNV HGSDS
Sbjct: 72 KMVSFMKSGPILATVWEGKDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDS 131
Query: 202 PENGKREIGLWFKEGELCQWTPAQAQWLRE 231
++ +REI LWFK+ EL W QA+W+ E
Sbjct: 132 VDSAEREINLWFKKEELVDWESNQAKWIYE 161
>pdb|1ZS6|A Chain A, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|B Chain B, Structure Of Human Nucleoside-diphosphate Kinase 3
pdb|1ZS6|D Chain D, Structure Of Human Nucleoside-diphosphate Kinase 3
Length = 169
Score = 162 bits (410), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 71/148 (47%), Positives = 98/148 (66%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++ VKPDGVQR LVG+I+ RFE Q ++L EHY +L +PF+ +L
Sbjct: 22 ERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRL 81
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
++Y+ SGPVV M W+G VV ++R LIG+T+P A PGTIRGD ++ G+N++HGSDS E
Sbjct: 82 VKYMASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVE 141
Query: 204 NGKREIGLWFKEGELCQWTPAQAQWLRE 231
+ +REI LWF+ EL W + WL E
Sbjct: 142 SARREIALWFRADELLCWEDSAGHWLYE 169
>pdb|4F36|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|D Chain D, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|E Chain E, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F36|F Chain F, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Apo Form
pdb|4F4A|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
pdb|4F4A|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase B From
Trypanosoma Brucei, Udp-Bound Form
Length = 157
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 78/148 (52%), Positives = 95/148 (64%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T+I VKPDGVQR LVG+II RFE Q ++ A++HY DL SKPF+ L
Sbjct: 8 ERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGL 67
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ Y +SGP+V M WEG GVV R L+G+T+P + PGTIRGD AV GRNV HGSDS E
Sbjct: 68 VSYFSSGPIVGMVWEGLGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVE 127
Query: 204 NGKREIGLWFKEGELCQWTPAQAQWLRE 231
+ KREI WFK EL WT + + E
Sbjct: 128 SAKREIAFWFKAEELVSWTSHSVKQIYE 155
>pdb|1UCN|A Chain A, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|B Chain B, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
pdb|1UCN|C Chain C, X-Ray Structure Of Human Nucleoside Diphosphate Kinase A
Complexed With Adp At 2 A Resolution
Length = 152
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 74/152 (48%), Positives = 98/152 (64%)
Query: 80 MEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPF 139
M E T+I +KPDGVQRGLVG+II RFE Q +DL +EHY DL +P+
Sbjct: 1 MANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPW 60
Query: 140 FPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGS 199
F L++Y+ SGPVV M WEG VV + R ++G T+P ++PGTIRGD +Q GRN++ GS
Sbjct: 61 FAGLVKYMHSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIGGS 120
Query: 200 DSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231
DS E+ ++EIGLWF EL +T W+ E
Sbjct: 121 DSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 152
>pdb|1NSK|R Chain R, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|L Chain L, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|T Chain T, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|U Chain U, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|N Chain N, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
pdb|1NSK|O Chain O, The Crystal Structure Of A Human Nucleoside Diphosphate
Kinase, Nm23-H2
Length = 152
Score = 162 bits (409), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 71/152 (46%), Positives = 99/152 (65%)
Query: 80 MEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPF 139
M +E T+I +KPDGVQRGLVG+II RFE + ++ ++HY DL +PF
Sbjct: 1 MANLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPF 60
Query: 140 FPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGS 199
FP L++Y+ SGPVV M WEG VV + R ++G T+P ++PGTIRGD +Q GRN++HGS
Sbjct: 61 FPGLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGS 120
Query: 200 DSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231
DS ++ ++EI LWFK EL + W+ E
Sbjct: 121 DSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 152
>pdb|1XIQ|A Chain A, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|B Chain B, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|C Chain C, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|D Chain D, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|E Chain E, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
pdb|1XIQ|F Chain F, Plasmodium Falciparum Nucleoside Diphosphate Kinase B
Length = 157
Score = 161 bits (407), Expect = 3e-40, Method: Compositional matrix adjust.
Identities = 70/147 (47%), Positives = 96/147 (65%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPK 142
+E+++IM+KPDGVQRGLVG II RFE +++ +EHYK+L+ +PFF
Sbjct: 9 MEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKN 68
Query: 143 LIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSP 202
L+ YI+ GPVV M WEG +V RKLIG T+PL + GTIRGD ++ +NV+HGSDS
Sbjct: 69 LVAYISKGPVVAMVWEGVDMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSV 128
Query: 203 ENGKREIGLWFKEGELCQWTPAQAQWL 229
+ +EI +WFK EL QW +W+
Sbjct: 129 ASANKEINIWFKAEELTQWKHHMKEWI 155
>pdb|3PRV|A Chain A, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|B Chain B, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|C Chain C, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|D Chain D, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|E Chain E, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
pdb|3PRV|F Chain F, Nucleoside Diphosphate Kinase B From Trypanosoma Cruzi
Length = 157
Score = 160 bits (404), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 77/148 (52%), Positives = 94/148 (63%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T+I VKPDGVQR LVG+II RFE Q + A++HY DL SKPF+ L
Sbjct: 10 ERTFIAVKPDGVQRCLVGEIIQRFEKKGYKLVALKMLQPSAEQAQQHYIDLASKPFYKDL 69
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ Y +SGP+V M WEG GVV R L+G+T+P + PGTIRGD AV GRNV HGSDS +
Sbjct: 70 VAYFSSGPIVGMVWEGKGVVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVD 129
Query: 204 NGKREIGLWFKEGELCQWTPAQAQWLRE 231
+ KREI WFK EL WT + + E
Sbjct: 130 SAKREIAFWFKPEELVNWTSHSVKQVYE 157
>pdb|1NUE|A Chain A, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|B Chain B, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|C Chain C, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|D Chain D, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|E Chain E, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|1NUE|F Chain F, X-ray Structure Of Nm23 Human Nucleoside Diphosphate
Kinase B Complexed With Gdp At 2 Angstroms Resolution
pdb|3BBB|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBB|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Dinucleotide D(Ag)
pdb|3BBF|A Chain A, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|B Chain B, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|C Chain C, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|D Chain D, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|E Chain E, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
pdb|3BBF|F Chain F, Crystal Structure Of The Nm23-H2 Transcription Factor
Complex With Gdp
Length = 151
Score = 160 bits (404), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 70/150 (46%), Positives = 98/150 (65%)
Query: 82 QVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFP 141
+E T+I +KPDGVQRGLVG+II RFE + ++ ++HY DL +PFFP
Sbjct: 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 61
Query: 142 KLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 201
L++Y+ SGPVV M WEG VV + R ++G T+P ++PGTIRGD +Q GRN++HGSDS
Sbjct: 62 GLVKYMNSGPVVAMVWEGLNVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDS 121
Query: 202 PENGKREIGLWFKEGELCQWTPAQAQWLRE 231
++ ++EI LWFK EL + W+ E
Sbjct: 122 VKSAEKEISLWFKPEELVDYKSCAHDWVYE 151
>pdb|2VU5|A Chain A, Crystal Structure Of Pndk From Bacillus Anthracis
Length = 148
Score = 159 bits (401), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 68/147 (46%), Positives = 100/147 (68%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPK 142
+E+T++MVKPDGVQR +G+I++RFE Q ++A +HY + KPFF +
Sbjct: 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGE 60
Query: 143 LIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSP 202
L+++ITSGPV M W+G GVV +AR ++G T P +A PGTIRGD V +N++HGSDS
Sbjct: 61 LVDFITSGPVFAMVWQGEGVVDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSL 120
Query: 203 ENGKREIGLWFKEGELCQWTPAQAQWL 229
E+ +REIG++FKE EL ++ +W+
Sbjct: 121 ESAEREIGIFFKEEELVDYSKLMNEWI 147
>pdb|1NDP|A Chain A, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1NDP|B Chain B, Adenosine 5'-Diphosphate Binding And The Active Site Of
Nucleoside Diphosphate Kinase
pdb|1KDN|A Chain A, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|B Chain B, Structure Of Nucleoside Diphosphate Kinase
pdb|1KDN|C Chain C, Structure Of Nucleoside Diphosphate Kinase
pdb|2BEF|A Chain A, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|B Chain B, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|2BEF|C Chain C, Crystal Structure Of Ndp Kinase Complexed With Mg, Adp,
And Bef3
pdb|1BUX|A Chain A, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|B Chain B, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1BUX|C Chain C, 3'-Phosphorylated Nucleotides Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|A Chain A, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|B Chain B, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|C Chain C, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|D Chain D, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|E Chain E, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1B99|F Chain F, 3'-Fluoro-Uridine Diphosphate Binding To Nucleoside
Diphosphate Kinase
pdb|1F6T|A Chain A, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|B Chain B, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1F6T|C Chain C, Structure Of The Nucleoside Diphosphate
Kinase/alpha-borano(rp)-tdp.mg Complex
pdb|1HIY|A Chain A, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|B Chain B, Binding Of Nucleotides To Ndp Kinase
pdb|1HIY|C Chain C, Binding Of Nucleotides To Ndp Kinase
pdb|1S5Z|A Chain A, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|B Chain B, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|C Chain C, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|D Chain D, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|E Chain E, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1S5Z|F Chain F, Ndp Kinase In Complex With Adenosine Phosphonoacetic Acid
pdb|1NDC|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase Complexed
With Dtdp And Mg2+ At 2 A Resolution
Length = 155
Score = 157 bits (398), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 75/136 (55%), Positives = 92/136 (67%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++ VKPDGV RGLVG+II+R+E KDLAE HY + +PFF L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ +ITSGPVV M +EG GVVASAR +IG T+PL + PG+IRGD V GRN++HGSDS E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVE 128
Query: 204 NGKREIGLWFKEGELC 219
+ REI LWFK EL
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|1NPK|A Chain A, Refined X-Ray Structure Of Dictyostelium Nucleoside
Diphosphate Kinase At 1,8 Angstroms Resolution
Length = 154
Score = 157 bits (397), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 75/136 (55%), Positives = 92/136 (67%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++ VKPDGV RGLVG+II+R+E KDLAE HY + +PFF L
Sbjct: 8 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 67
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ +ITSGPVV M +EG GVVASAR +IG T+PL + PG+IRGD V GRN++HGSDS E
Sbjct: 68 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVE 127
Query: 204 NGKREIGLWFKEGELC 219
+ REI LWFK EL
Sbjct: 128 SANREIALWFKPEELL 143
>pdb|3BBC|A Chain A, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|B Chain B, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|C Chain C, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|D Chain D, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|E Chain E, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
pdb|3BBC|F Chain F, Crystal Structure Of R88a Mutant Of The Nm23-H2
Transcription Factor
Length = 151
Score = 157 bits (397), Expect = 5e-39, Method: Compositional matrix adjust.
Identities = 69/150 (46%), Positives = 97/150 (64%)
Query: 82 QVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFP 141
+E T+I +KPDGVQRGLVG+II RFE + ++ ++HY DL +PFFP
Sbjct: 2 NLERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFP 61
Query: 142 KLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 201
L++Y+ SGPVV M WEG VV + ++G T+P ++PGTIRGD +Q GRN++HGSDS
Sbjct: 62 GLVKYMNSGPVVAMVWEGLNVVKTGAVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDS 121
Query: 202 PENGKREIGLWFKEGELCQWTPAQAQWLRE 231
++ ++EI LWFK EL + W+ E
Sbjct: 122 VKSAEKEISLWFKPEELVDYKSCAHDWVYE 151
>pdb|1HHQ|A Chain A, Role Of Active Site Resiude Lys16 In Nucleoside
Diphosphate Kinase
Length = 155
Score = 155 bits (393), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 91/136 (66%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++ V PDGV RGLVG+II+R+E KDLAE HY + +PFF L
Sbjct: 9 ERTFLAVAPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ +ITSGPVV M +EG GVVASAR +IG T+PL + PG+IRGD V GRN++HGSDS E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIHGSDSVE 128
Query: 204 NGKREIGLWFKEGELC 219
+ REI LWFK EL
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|1LWX|A Chain A, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|B Chain B, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
pdb|1LWX|C Chain C, Azt Diphosphate Binding To Nucleoside Diphosphate Kinase
Length = 155
Score = 155 bits (391), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 91/136 (66%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++ VKPDGV RGLVG+II+R+E KDLAE HY + +PFF L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ +ITSGPVV M +EG GVVASAR +IG T+PL + PG+IRGD V GR ++HGSDS E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRAIIHGSDSVE 128
Query: 204 NGKREIGLWFKEGELC 219
+ REI LWFK EL
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|1LEO|A Chain A, P100s Nucleoside Diphosphate Kinase
Length = 150
Score = 154 bits (390), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 91/136 (66%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++ VKPDGV RGLVG+II+R+E KDLAE HY + +PFF L
Sbjct: 4 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 63
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ +ITSGPVV M +EG GVVASAR +IG T+ L + PG+IRGD V GRN++HGSDS E
Sbjct: 64 VSFITSGPVVAMVFEGKGVVASARLMIGVTNSLASAPGSIRGDFGVDVGRNIIHGSDSVE 123
Query: 204 NGKREIGLWFKEGELC 219
+ REI LWFK EL
Sbjct: 124 SANREIALWFKPEELL 139
>pdb|3Q83|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q83|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase
pdb|3Q86|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q86|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Gtp
pdb|3Q89|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q89|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Cdp
pdb|3Q8U|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8U|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp
pdb|3Q8V|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8V|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Udp
pdb|3Q8Y|A Chain A, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|B Chain B, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|C Chain C, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|D Chain D, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|E Chain E, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|F Chain F, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|G Chain G, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
pdb|3Q8Y|H Chain H, Crystal Structure Of Staphylococcus Aureus Nucleoside
Diphosphate Kinase Complexed With Adp And Vanadate
Length = 157
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 70/149 (46%), Positives = 94/149 (63%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPK 142
+E T++M+KPD VQR L+G++ISR E Q P +LAE HY + KPF+
Sbjct: 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYND 60
Query: 143 LIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSP 202
LI +ITS PV M EG V +R +IGST+P +A PG+IRGDL + GRN++HGSDS
Sbjct: 61 LISFITSAPVFAMVVEGEDAVNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSL 120
Query: 203 ENGKREIGLWFKEGELCQWTPAQAQWLRE 231
E+ +REI LWF E E+ + + WL E
Sbjct: 121 ESAEREINLWFNENEITSYASPRDAWLYE 149
>pdb|1NSP|A Chain A, Mechanism Of Phosphate Transfer By Nucleoside Diphosphate
Kinase: X- Ray Structures Of A Phospho-Histidine
Intermediate Of The Enzymes From Drosophila And
Dictyostelium
Length = 155
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 91/136 (66%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++ VKPDGV RGLVG+II+R+E KDLAE HY + +PFF L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ +ITSGPVV M +EG GVVASAR +IG T+PL + PG+IRGD V GRN++ GSDS E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIXGSDSVE 128
Query: 204 NGKREIGLWFKEGELC 219
+ REI LWFK EL
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|1HLW|A Chain A, Structure Of The H122a Mutant Of The Nucleoside
Diphosphate Kinase
Length = 155
Score = 154 bits (389), Expect = 4e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 91/136 (66%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++ VKPDGV RGLVG+II+R+E KDLAE HY + +PFF L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ +ITSGPVV M +EG GVVASAR +IG T+PL + PG+IRGD V GRN++ GSDS E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIAGSDSVE 128
Query: 204 NGKREIGLWFKEGELC 219
+ REI LWFK EL
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|3R9L|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Giardia Lamblia Featuring A Disordered Dinucleotide
Binding Site
Length = 155
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 69/139 (49%), Positives = 94/139 (67%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++MVKPDGVQRGLVG+IISRFE K+L EEHYK+ ++PFF L
Sbjct: 8 ERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGL 67
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
++++SGPV M WEGA VV+ +R ++G T P ++ PGTIRGD + GRN++HGS + +
Sbjct: 68 CKFLSSGPVCAMVWEGANVVSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLD 127
Query: 204 NGKREIGLWFKEGELCQWT 222
+ REI LWFK E+ W+
Sbjct: 128 DAAREIALWFKPEEVASWS 146
>pdb|1NCL|A Chain A, Thermal Stability Of Hexameric And Tetrameric Nucleoside,
Diphosphate Kinases
Length = 150
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 91/136 (66%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++ VKPDGV RGLVG+II+R+E KDLAE HY + +PFF L
Sbjct: 4 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 63
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ +ITSGPVV M +EG GVVASAR +IG T+PL + G+IRGD V GRN++HGSDS E
Sbjct: 64 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAGGSIRGDFGVDVGRNIIHGSDSVE 123
Query: 204 NGKREIGLWFKEGELC 219
+ REI LWFK EL
Sbjct: 124 SANREIALWFKPEELL 139
>pdb|1B4S|A Chain A, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|B Chain B, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1B4S|C Chain C, Structure Of Nucleoside Diphosphate Kinase H122g Mutant
pdb|1F3F|A Chain A, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|B Chain B, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1F3F|C Chain C, Structure Of The H122g Nucleoside Diphosphate Kinase D4T-
Triphosphate.Mg Complex
pdb|1MN9|A Chain A, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|B Chain B, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|1MN9|C Chain C, Ndp Kinase Mutant (H122g) Complex With Rtp
pdb|3FKB|A Chain A, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|B Chain B, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|C Chain C, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|D Chain D, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|E Chain E, Structure Of Ndpk H122g And Tenofovir-Diphosphate
pdb|3FKB|F Chain F, Structure Of Ndpk H122g And Tenofovir-Diphosphate
Length = 155
Score = 154 bits (388), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 91/136 (66%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++ VKPDGV RGLVG+II+R+E KDLAE HY + +PFF L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ +ITSGPVV M +EG GVVASAR +IG T+PL + PG+IRGD V GRN++ GSDS E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVE 128
Query: 204 NGKREIGLWFKEGELC 219
+ REI LWFK EL
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|1NDK|A Chain A, X-Ray Structure Of Nucleoside Diphosphate Kinase
Length = 155
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 74/136 (54%), Positives = 91/136 (66%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++ VKPDGV RGLVG+II+R+E KDLAE HY + +PFF L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ +ITSGPVV M +EG GVVASAR +IG T+PL + PG+IRGD V GRN++ GSDS E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIICGSDSVE 128
Query: 204 NGKREIGLWFKEGELC 219
+ REI LWFK EL
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|1WKJ|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKJ|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8
pdb|1WKK|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKK|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Gdp
pdb|1WKL|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
pdb|1WKL|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Thermus Thermophilus Hb8 In Complex With Atp And Adp
Length = 137
Score = 152 bits (385), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 70/137 (51%), Positives = 92/137 (67%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPK 142
+E T++M+KPDGV+RGLVG+I++RFE Q ++LAE HY + KPFFP
Sbjct: 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPG 60
Query: 143 LIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSP 202
L+ +ITSGPVV M EG GVVA RK++G+T P A PGTIRGD A NV+HGS +
Sbjct: 61 LVRFITSGPVVAMVLEGPGVVAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATL 120
Query: 203 ENGKREIGLWFKEGELC 219
E+ +REI L+F+ EL
Sbjct: 121 EDAQREIALFFRPEELL 137
>pdb|2AZ3|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|G Chain G, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|H Chain H, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
pdb|2AZ3|I Chain I, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum In Complex With Cdp
Length = 164
Score = 150 bits (378), Expect = 7e-37, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 92/153 (60%), Gaps = 2/153 (1%)
Query: 81 EQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFF 140
+ E T++MVKPDGVQRGL+GDI++R E + ++LA EHY + KPFF
Sbjct: 6 DHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFF 65
Query: 141 PKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSD 200
L+ +ITSGPV M WEGA R+L+G+TD A PGTIRGD G N++HGSD
Sbjct: 66 DGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSD 125
Query: 201 SPENG--KREIGLWFKEGELCQWTPAQAQWLRE 231
+ G +REI L+F + EL W + W+ E
Sbjct: 126 HEDEGANEREIALFFDDDELVDWDRDASAWVYE 158
>pdb|1PAE|X Chain X, Nucleoside Diphosphate Kinase
Length = 155
Score = 149 bits (377), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 73/136 (53%), Positives = 89/136 (65%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++ VKPDGV RGLVG+II+R+E KDLAE HY + +PFF L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGL 68
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ +ITSGPVV +EG GVVASAR IG T+PL + PG+IRGD V GRN++ GSDS E
Sbjct: 69 VSFITSGPVVAXVFEGKGVVASARLXIGVTNPLASAPGSIRGDFGVDVGRNIIXGSDSVE 128
Query: 204 NGKREIGLWFKEGELC 219
+ REI LWFK EL
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|2AZ1|A Chain A, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|B Chain B, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|C Chain C, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|D Chain D, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|E Chain E, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
pdb|2AZ1|F Chain F, Structure Of A Halophilic Nucleoside Diphosphate Kinase
From Halobacterium Salinarum
Length = 181
Score = 149 bits (377), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 69/153 (45%), Positives = 92/153 (60%), Gaps = 2/153 (1%)
Query: 81 EQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFF 140
+ E T++MVKPDGVQRGL+GDI++R E + ++LA EHY + KPFF
Sbjct: 23 DHDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFF 82
Query: 141 PKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSD 200
L+ +ITSGPV M WEGA R+L+G+TD A PGTIRGD G N++HGSD
Sbjct: 83 DGLVSFITSGPVFAMVWEGADATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSD 142
Query: 201 SPENG--KREIGLWFKEGELCQWTPAQAQWLRE 231
+ G +REI L+F + EL W + W+ E
Sbjct: 143 HEDEGANEREIALFFDDDELVDWDRDASAWVYE 175
>pdb|1MN7|A Chain A, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
pdb|1MN7|B Chain B, Ndp Kinase Mutant (H122g;n119s;f64w) In Complex With
Abazttp
Length = 155
Score = 148 bits (374), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 72/136 (52%), Positives = 91/136 (66%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++ VKPDGV RGLVG+II+R+E KDLAE HY + +P+F L
Sbjct: 9 ERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPWFGGL 68
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ +ITSGPVV M +EG GVVASAR +IG T+PL + PG+IRGD V GR+++ GSDS E
Sbjct: 69 VSFITSGPVVAMVFEGKGVVASARLMIGVTNPLASAPGSIRGDFGVDVGRSIIGGSDSVE 128
Query: 204 NGKREIGLWFKEGELC 219
+ REI LWFK EL
Sbjct: 129 SANREIALWFKPEELL 144
>pdb|2CWK|A Chain A, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2CWK|B Chain B, Crystal Structure Of Nucleotide Diphosphate Kinase From
Pyrococcus Horikoshii
pdb|2DXD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Atp Analog
pdb|2DXE|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXE|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gdp
pdb|2DXF|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DXF|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Gtp Analog
pdb|2DY9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DY9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase In
Complex With Adp
pdb|2DYA|A Chain A, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
pdb|2DYA|B Chain B, Crystal Structure Of Complex Between Adenine Nucleotide
And Nucleoside Diphosphate Kinase
Length = 160
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 70/153 (45%), Positives = 92/153 (60%), Gaps = 4/153 (2%)
Query: 80 MEQVEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPF 139
M + E T +++KPD V RGL+G+IISRFE ++LAE+HY++ KPF
Sbjct: 4 MSETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPF 63
Query: 140 FPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGR---NVV 196
F LI+YIT PVV M EG V RK+ G+TDP A PGTIRGD ++ NV+
Sbjct: 64 FKALIDYITKTPVVVMVLEGRYAVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVI 123
Query: 197 HGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 229
H SDS E+ +REI L+FK EL ++ P A W
Sbjct: 124 HASDSKESAEREISLFFKPEELFEY-PRAADWF 155
>pdb|1K44|A Chain A, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|B Chain B, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|C Chain C, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|D Chain D, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|E Chain E, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
pdb|1K44|F Chain F, Mycobacterium Tuberculosis Nucleoside Diphosphate Kinase
Length = 136
Score = 139 bits (349), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 65/131 (49%), Positives = 86/131 (65%), Gaps = 1/131 (0%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T +++KPDG++R L+G+IISR E +LA +HY + KPFF L
Sbjct: 3 ERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSL 62
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQ-AEPGTIRGDLAVQTGRNVVHGSDSP 202
+E+ITSGPVV EG +A+ R+L G TDP+Q A PGTIRGD A++T N+VHGSDS
Sbjct: 63 LEFITSGPVVAAIVEGTRAIAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSA 122
Query: 203 ENGKREIGLWF 213
E+ +REI LWF
Sbjct: 123 ESAQREIALWF 133
>pdb|3JS9|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
pdb|3JS9|C Chain C, Crystal Structure Of Nucleoside Diphosphate Kinase Family
Protein From Babesia Bovis
Length = 156
Score = 137 bits (344), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 63/147 (42%), Positives = 83/147 (56%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPK 142
+E TYIMVKPDGVQRGL+G+I+ RFE D+ +HY + KPFF
Sbjct: 9 MERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKD 68
Query: 143 LIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSP 202
L ++I+ GPV CM WEG + R L+G T P+++ GTIRGD V N+VH S S
Sbjct: 69 LCDFISHGPVFCMIWEGPEAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSA 128
Query: 203 ENGKREIGLWFKEGELCQWTPAQAQWL 229
E+ RE LWF +L W + W+
Sbjct: 129 EDAARECALWFTPEQLVTWERSVGGWI 155
>pdb|1NB2|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Bacillus Halodenitrificans
Length = 150
Score = 126 bits (316), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 65/134 (48%), Positives = 82/134 (61%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T++MVKPDGVQR LVG+++ RFE KD A HY +L PFF L
Sbjct: 3 ERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGL 62
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ TSGPV M WEG A+AR+++G+T+P A PGTIRGD V GRN +HGSDS
Sbjct: 63 VGGATSGPVFAMVWEGLNAAATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAG 122
Query: 204 NGKREIGLWFKEGE 217
+ +EIG +F GE
Sbjct: 123 SAAKEIGAFFGGGE 136
>pdb|3VGS|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGS|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|A Chain A, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|B Chain B, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|C Chain C, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|D Chain D, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGT|E Chain E, Wild-Type Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 124 bits (311), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 81/136 (59%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T ++KPD V + ++G+I SRFE Q ++ AE Y + +PFF L
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDL 63
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ ++TSGPVV EG +A+ R L+G+T+P +AE GTIR D A N VHGSDSPE
Sbjct: 64 VGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVHGSDSPE 123
Query: 204 NGKREIGLWFKEGELC 219
+ REI +F+E E+C
Sbjct: 124 SAAREIAYFFEESEIC 139
>pdb|3MPD|A Chain A, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
pdb|3MPD|B Chain B, Crystal Structure Of Nucleoside Diphosphate Kinase From
Encephalitozoon Cuniculi, Cubic Form, Apo
Length = 151
Score = 124 bits (310), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 58/131 (44%), Positives = 80/131 (61%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPK 142
+E T+IM+KPD ++R L+ II RFE +++ E HY L+S PFF +
Sbjct: 5 MERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSE 64
Query: 143 LIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSP 202
++E + SG V+ M W G V+ RKLIG T+P A GTIRGD V TG+N++HGSD
Sbjct: 65 MVEDMMSGMVLAMVWVGKDAVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCV 124
Query: 203 ENGKREIGLWF 213
EN ++EI LW
Sbjct: 125 ENAEKEIKLWI 135
>pdb|3VGU|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGU|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|A Chain A, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|B Chain B, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|C Chain C, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|D Chain D, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|E Chain E, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|F Chain F, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|G Chain G, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|H Chain H, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|I Chain I, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|J Chain J, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|K Chain K, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|L Chain L, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|M Chain M, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|N Chain N, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|O Chain O, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
pdb|3VGV|P Chain P, E134a Mutant Nucleoside Diphosphate Kinase Derived From
Halomonas Sp. 593
Length = 141
Score = 124 bits (310), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 58/136 (42%), Positives = 80/136 (58%)
Query: 84 EETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPKL 143
E T ++KPD V + ++G+I SRFE Q ++ AE Y + +PFF L
Sbjct: 4 ERTLSIIKPDAVAKNVIGEIESRFEKAGLKIVAAKMLQLSQEQAEGFYAEHKERPFFGDL 63
Query: 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE 203
+ ++TSGPVV EG +A+ R L+G+T+P +AE GTIR D A N VHGSDSPE
Sbjct: 64 VGFMTSGPVVVQVLEGENAIAANRDLMGATNPKEAEAGTIRADYAQSIDANAVHGSDSPE 123
Query: 204 NGKREIGLWFKEGELC 219
+ REI +F E E+C
Sbjct: 124 SAAREIAYFFAESEIC 139
>pdb|3PJ9|A Chain A, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|B Chain B, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|C Chain C, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
pdb|3PJ9|D Chain D, Crystal Structure Of A Nucleoside Diphosphate Kinase From
Campylobacter Jejuni
Length = 140
Score = 123 bits (308), Expect = 9e-29, Method: Compositional matrix adjust.
Identities = 59/137 (43%), Positives = 80/137 (58%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPK 142
+E+T ++KPD V++G++G I+ RFE Q K+ AE Y +PFF
Sbjct: 4 MEKTLSIIKPDAVKKGVIGKILDRFESNGLRIAAMKKVQLSKEQAENFYAVHKERPFFKD 63
Query: 143 LIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSP 202
L+E++ SGPVV EG G V R L+G+T+P +A+ GTIR D A N VHGSDS
Sbjct: 64 LVEFMISGPVVVSILEGEGAVLKNRDLMGATNPKEAKAGTIRADFAESIDANAVHGSDSL 123
Query: 203 ENGKREIGLWFKEGELC 219
EN K EI +FK E+C
Sbjct: 124 ENAKIEIEFFFKPNEIC 140
>pdb|2NCK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|2NCK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NLK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|R Chain R, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
pdb|1NHK|L Chain L, Crystal Structure Of Myxococcus Xanthus Nucleoside
Diphosphate Kinase And Its Interaction With A Nucleotide
Substrate At 2.0 Angstroms Resolution
Length = 144
Score = 122 bits (305), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 57/139 (41%), Positives = 82/139 (58%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPK 142
+E T ++KPDG+++G++G IISRFE + AE Y ++PFF
Sbjct: 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKD 61
Query: 143 LIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSP 202
L++++ SGPVV M EG V + R ++G+T+P QA GTIR D A +N VHGSDS
Sbjct: 62 LVQFMISGPVVLMVLEGENAVLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSL 121
Query: 203 ENGKREIGLWFKEGELCQW 221
EN K EI +F+E E+ +
Sbjct: 122 ENAKIEIAYFFRETEIHSY 140
>pdb|3DDI|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3DDI|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Tdp
pdb|3ENA|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ENA|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dgdp
pdb|3ETM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3ETM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Cdp
pdb|3EVM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3EVM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dcdp
pdb|3FCV|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3FCV|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Dudp
pdb|3DKD|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
pdb|3DKD|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l-R107g
Triple Mutant Complexed With Gdp
Length = 146
Score = 116 bits (290), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 49/137 (35%), Positives = 85/137 (62%), Gaps = 1/137 (0%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXX-XQCPKDLAEEHYKDLNSKPFFP 141
++ T +++KPD +R LV +I+ R E + P++L E+HYK+ + + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 142 KLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 201
L +++ SGP++ + +EG ++ R+L G+T+PL + PGTIRGDLA G N++H SDS
Sbjct: 66 DLCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIGENLIHASDS 125
Query: 202 PENGKREIGLWFKEGEL 218
++ EI +WF E ++
Sbjct: 126 EDSAVDEISIWFPETKM 142
>pdb|3EM1|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3EM1|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Dtdp
pdb|3G2X|A Chain A, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|B Chain B, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|C Chain C, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|D Chain D, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|E Chain E, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3G2X|F Chain F, Structure Of Mimivirus Ndk +kpn - N62l Double Mutant
Complexed With Dtdp
pdb|3FC9|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|C Chain C, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|D Chain D, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|E Chain E, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
pdb|3FC9|F Chain F, Crystal Structure Of The Mimivirus Ndk +kpn-N62l Double
Mutant Complexed With Cdp
Length = 146
Score = 113 bits (282), Expect = 9e-26, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 84/137 (61%), Gaps = 1/137 (0%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXX-XQCPKDLAEEHYKDLNSKPFFP 141
++ T +++KPD +R LV +I+ R E + P++L E+HYK+ + + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 142 KLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 201
L +++ SGP++ + +EG ++ R+L G+T+PL + PGTIRGDLA N++H SDS
Sbjct: 66 DLCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDS 125
Query: 202 PENGKREIGLWFKEGEL 218
++ EI +WF E ++
Sbjct: 126 EDSAVDEISIWFPETKM 142
>pdb|3EMT|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
pdb|3EMT|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn-R107g Double
Mutant Complexed With Dgdp
Length = 146
Score = 113 bits (282), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 48/137 (35%), Positives = 84/137 (61%), Gaps = 1/137 (0%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXX-XQCPKDLAEEHYKDLNSKPFFP 141
++ T +++KPD +R LV +I+ R E + P++L E+HYK+ + + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 142 KLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 201
+++ SGP++ + +EG ++ R+L G+T+PL + PGTIRGDLA G N++H SDS
Sbjct: 66 DNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIGENLIHASDS 125
Query: 202 PENGKREIGLWFKEGEL 218
++ EI +WF E ++
Sbjct: 126 EDSAVDEISIWFPETKM 142
>pdb|2HUR|A Chain A, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|B Chain B, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|C Chain C, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|D Chain D, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|E Chain E, Escherichia Coli Nucleoside Diphosphate Kinase
pdb|2HUR|F Chain F, Escherichia Coli Nucleoside Diphosphate Kinase
Length = 142
Score = 110 bits (276), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 53/140 (37%), Positives = 77/140 (55%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPK 142
+E T+ ++KP+ V + ++G+I +RFE + A Y + + KPFF
Sbjct: 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDG 61
Query: 143 LIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSP 202
L+E++TSGP+V EG V R L+G+T+P A GT+R D A N HGSDS
Sbjct: 62 LVEFMTSGPIVVSVLEGENAVQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSV 121
Query: 203 ENGKREIGLWFKEGELCQWT 222
E+ REI +F EGE+C T
Sbjct: 122 ESAAREIAYFFGEGEVCPRT 141
>pdb|3EJM|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EJM|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Gdp
pdb|3EVO|A Chain A, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
pdb|3EVO|B Chain B, Crystal Structure Of The Mimivirus Ndk +kpn Mutant
Complexed With Dtdp
Length = 146
Score = 110 bits (275), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 47/137 (34%), Positives = 83/137 (60%), Gaps = 1/137 (0%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXX-XQCPKDLAEEHYKDLNSKPFFP 141
++ T +++KPD +R LV +I+ R E + P++L E+HYK+ + + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 142 KLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 201
+++ SGP++ + +EG ++ R+L G+T+PL + PGTIRGDLA N++H SDS
Sbjct: 66 DNCDFMVSGPIISIVYEGTDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDS 125
Query: 202 PENGKREIGLWFKEGEL 218
++ EI +WF E ++
Sbjct: 126 EDSAVDEISIWFPETKM 142
>pdb|4DUT|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4DUT|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis
pdb|4EK2|A Chain A, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4EK2|B Chain B, The Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Deoxyadenosine
Monophosphate
pdb|4HR2|A Chain A, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
pdb|4HR2|B Chain B, Structure Of Nucleoside Diphosphate Kinase (Ndk) From
Burkholderia Thailandensis Bound To Adp
Length = 145
Score = 108 bits (271), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 52/133 (39%), Positives = 72/133 (54%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPK 142
+E T ++KPD V + ++G I SRFE + AE+ Y +PFF
Sbjct: 7 LERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKD 66
Query: 143 LIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSP 202
L+E++ SGPV+ EG + R L+G+TDP +AE GTIR D A N VHGSD+P
Sbjct: 67 LVEFMISGPVMIQVLEGEDAILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAP 126
Query: 203 ENGKREIGLWFKE 215
E + EI +F E
Sbjct: 127 ETARVEIAFFFPE 139
>pdb|3FBE|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBE|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Gdp
pdb|3FBB|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBB|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Udp
pdb|3FBC|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
pdb|3FBC|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l-R107g Double
Mutant Complexed With Dtdp
Length = 142
Score = 102 bits (255), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 46/137 (33%), Positives = 80/137 (58%), Gaps = 5/137 (3%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXX-XQCPKDLAEEHYKDLNSKPFFP 141
++ T +++KPD +R LV +I+ R E + P++L E+HYK+ + + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 142 KLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 201
L +++ SGP++ + +EG ++ R+L G+ PGTIRGDLA G N++H SDS
Sbjct: 66 DLCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIGENLIHASDS 121
Query: 202 PENGKREIGLWFKEGEL 218
++ EI +WF E ++
Sbjct: 122 EDSAVDEISIWFPETKM 138
>pdb|4DI6|A Chain A, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|B Chain B, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|C Chain C, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|D Chain D, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|E Chain E, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DI6|F Chain F, Crystal Structure Of Nucleoside-Diphosphate Kinase From
Borrelia Burgdorferi
pdb|4DZ6|A Chain A, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|B Chain B, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|C Chain C, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|D Chain D, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|E Chain E, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
pdb|4DZ6|F Chain F, Transition State Mimic Of Nucleoside-Diphosphate Kinase
From Borrelia Burgdorferi With Bound Vanadate And Adp
Length = 190
Score = 100 bits (250), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 54/154 (35%), Positives = 86/154 (55%), Gaps = 15/154 (9%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHY--KDL---NSK 137
+++T +VKPDGV+RGL+GD++SRFE + LA++HY D+ +S+
Sbjct: 26 LQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSE 85
Query: 138 PFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGR---- 193
+ LI++I++ PV EG + RKL G+T+P A PGTIRGD + + +
Sbjct: 86 AVWNSLIKFISNSPVFTFVVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNE 145
Query: 194 ------NVVHGSDSPENGKREIGLWFKEGELCQW 221
NV+H S + + REI +WFK+ E+ +
Sbjct: 146 KGFSIYNVIHASANEADAMREIPIWFKDNEILNY 179
>pdb|3FBF|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FBF|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Dtdp
pdb|3FCW|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3FCW|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Udp
pdb|3GPA|A Chain A, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|C Chain C, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|E Chain E, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|B Chain B, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|D Chain D, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
pdb|3GPA|F Chain F, Crystal Structure Of The Mimivirus Ndk N62l Mutant
Complexed With Cdp
Length = 142
Score = 100 bits (248), Expect = 9e-22, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 5/137 (3%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXX-XQCPKDLAEEHYKDLNSKPFFP 141
++ T +++KPD +R LV +I+ R E + P++L E+HYK+ + + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 142 KLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 201
L +++ SGP++ + +EG ++ R+L G+ PGTIRGDLA N++H SDS
Sbjct: 66 DLCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLIHASDS 121
Query: 202 PENGKREIGLWFKEGEL 218
++ EI +WF E ++
Sbjct: 122 EDSAVDEISIWFPETKM 138
>pdb|3EVW|A Chain A, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|B Chain B, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|C Chain C, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|D Chain D, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|E Chain E, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
pdb|3EVW|F Chain F, Crystal Structure Of The Mimivirus Ndk R107g Mutant
Complexed With Dtdp
Length = 142
Score = 99.8 bits (247), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 45/137 (32%), Positives = 79/137 (57%), Gaps = 5/137 (3%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXX-XQCPKDLAEEHYKDLNSKPFFP 141
++ T +++KPD +R LV +I+ R E + P++L E+HYK+ + + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 142 KLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 201
+++ SGP++ + +EG ++ R+L G+ PGTIRGDLA G N++H SDS
Sbjct: 66 DNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIGENLIHASDS 121
Query: 202 PENGKREIGLWFKEGEL 218
++ EI +WF E ++
Sbjct: 122 EDSAVDEISIWFPETKM 138
>pdb|2B8P|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|2B8P|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus Ndk,
The First Viral Nucleoside Diphosphate Kinase
pdb|3B6B|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
pdb|3B6B|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dgdp
Length = 157
Score = 97.4 bits (241), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXX-XQCPKDLAEEHYKDLNSKPFFP 141
++ T +++KPD +R LV +I+ R E + P++L E+HYK+ + + +F
Sbjct: 21 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 80
Query: 142 KLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 201
+++ SGP++ + +EG ++ R+L G+ PGTIRGDLA N++H SDS
Sbjct: 81 DNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLIHASDS 136
Query: 202 PENGKREIGLWFKEGEL 218
++ EI +WF E ++
Sbjct: 137 EDSAVDEISIWFPETKM 153
>pdb|2B8Q|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|2B8Q|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Tdp
pdb|3EE3|A Chain A, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|B Chain B, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|C Chain C, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|D Chain D, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|E Chain E, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EE3|F Chain F, Crystal Structure Of Acanthamoeba Polyphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Cdp
pdb|3EIC|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3EIC|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Udp
pdb|3ELH|A Chain A, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|B Chain B, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|C Chain C, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|D Chain D, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|E Chain E, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3ELH|F Chain F, X-Ray Structure Of Acanthamoeba Ployphaga Mimivirus
Nucleoside Diphosphate Kinase Complexed With Dudp
pdb|3GP9|A Chain A, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|B Chain B, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|C Chain C, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|D Chain D, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|E Chain E, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
pdb|3GP9|F Chain F, Crystal Structure Of The Mimivirus Ndk Complexed With Gdp
Length = 142
Score = 97.1 bits (240), Expect = 8e-21, Method: Compositional matrix adjust.
Identities = 44/137 (32%), Positives = 78/137 (56%), Gaps = 5/137 (3%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXX-XQCPKDLAEEHYKDLNSKPFFP 141
++ T +++KPD +R LV +I+ R E + P++L E+HYK+ + + +F
Sbjct: 6 LQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFN 65
Query: 142 KLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDS 201
+++ SGP++ + +EG ++ R+L G+ PGTIRGDLA N++H SDS
Sbjct: 66 DNCDFMVSGPIISIVYEGTDAISKIRRLQGNI----LTPGTIRGDLANDIRENLIHASDS 121
Query: 202 PENGKREIGLWFKEGEL 218
++ EI +WF E ++
Sbjct: 122 EDSAVDEISIWFPETKM 138
>pdb|3ZTQ|A Chain A, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|B Chain B, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|C Chain C, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|D Chain D, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|E Chain E, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|F Chain F, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|G Chain G, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTQ|H Chain H, Hexagonal Crystal Form P61 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTO|A Chain A, Orthorhombic Crystal Form C222 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|A Chain A, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTP|C Chain C, Orthorhombic Crystal Form P21212 Of The Aquifex Aeolicus
Nucleoside Diphosphate Kinase
pdb|3ZTR|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTR|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (First Stage Of Radiation Damage)
pdb|3ZTS|A Chain A, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|B Chain B, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|C Chain C, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|D Chain D, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|E Chain E, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|F Chain F, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|G Chain G, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|H Chain H, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|I Chain I, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|J Chain J, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|K Chain K, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
pdb|3ZTS|L Chain L, Hexagonal Form P6122 Of The Aquifex Aeolicus Nucleoside
Diphosphate Kinase (Final Stage Of Radiation Damage)
Length = 142
Score = 94.4 bits (233), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 48/134 (35%), Positives = 71/134 (52%), Gaps = 3/134 (2%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQCPKDLAEEHYKDLNSKPFFPK 142
VE T I+VKPD +++G +G I+ RF + + A E Y +PFF +
Sbjct: 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQE 62
Query: 143 LIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAE---PGTIRGDLAVQTGRNVVHGS 199
L+E+++SGPVV EG + R++IG TD +A P +IR G+N +H S
Sbjct: 63 LVEFMSSGPVVAAVLEGEDAIKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHAS 122
Query: 200 DSPENGKREIGLWF 213
DSPE+ + EI F
Sbjct: 123 DSPESAQYEICFIF 136
>pdb|1XQI|A Chain A, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|B Chain B, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
pdb|1XQI|C Chain C, Crystal Structure Analysis Of An Ndp Kinase From
Pyrobaculum Aerophilum
Length = 195
Score = 88.2 bits (217), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 64/181 (35%), Positives = 87/181 (48%), Gaps = 43/181 (23%)
Query: 83 VEETYIMVKPDGVQRGLVGDIISRFEXXXXXXXXXXXXQC-PKDL------AEE------ 129
VE+T +++KPD V RGLV +IISRF+ + P+++ +EE
Sbjct: 15 VEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKXVKASPEEIERFYPSSEEWLQSAG 74
Query: 130 -----HYKDLNSKP---------------FFPKLIEYITSGPVVCMAWEGAGVVASARKL 169
Y++L P L++Y TSGP V +G V RKL
Sbjct: 75 QKLLKAYQELGIDPRAKIGTDDPVEVGRIIKRNLVKYXTSGPNVVXVLKGNRAVEIVRKL 134
Query: 170 IGSTDPLQAEPGTIRG-------DLAVQTGR---NVVHGSDSPENGKREIGLWFKEGELC 219
+G T P A PGTIRG DLA + GR N+VH SDSP +REI WF+E E+
Sbjct: 135 VGPTSPHSAPPGTIRGDYSIDSPDLAAEEGRVVFNLVHASDSPSEAEREIRFWFREEEVL 194
Query: 220 Q 220
+
Sbjct: 195 E 195
>pdb|3H0G|A Chain A, Rna Polymerase Ii From Schizosaccharomyces Pombe
pdb|3H0G|M Chain M, Rna Polymerase Ii From Schizosaccharomyces Pombe
Length = 1752
Score = 33.1 bits (74), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 28/68 (41%), Gaps = 5/68 (7%)
Query: 37 TSHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLVASMEQVEETYIMVKPDGVQ 96
S+L PQ F A + ETG LV +ME V MV+ DG
Sbjct: 808 NSYLRGLTPQEFFFHAMAGREGLIDTAVKTAETGYIQRRLVKAMEDV-----MVRYDGTV 862
Query: 97 RGLVGDII 104
R +GDII
Sbjct: 863 RNAMGDII 870
>pdb|1NI2|A Chain A, Structure Of The Active Ferm Domain Of Ezrin
pdb|1NI2|B Chain B, Structure Of The Active Ferm Domain Of Ezrin
Length = 296
Score = 28.5 bits (62), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 123 PKDLAEEHYKDLNSKPFFPKLIEYITSGPVVC 154
P+D+AEE +D+ K FF ++ E I S + C
Sbjct: 85 PEDVAEELIQDITQKLFFLQVKEGILSDEIYC 116
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.317 0.134 0.409
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,933,178
Number of Sequences: 62578
Number of extensions: 265870
Number of successful extensions: 673
Number of sequences better than 100.0: 67
Number of HSP's better than 100.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 68
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 50 (23.9 bits)