Query 026906
Match_columns 231
No_of_seqs 189 out of 1148
Neff 6.3
Searched_HMMs 46136
Date Fri Mar 29 14:22:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026906.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026906hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00093 nucleoside diphosphat 100.0 9.6E-48 2.1E-52 314.8 15.4 148 83-230 2-149 (149)
2 PRK14542 nucleoside diphosphat 100.0 2.1E-47 4.5E-52 308.8 15.2 136 83-218 1-136 (137)
3 PRK14541 nucleoside diphosphat 100.0 5.3E-47 1.1E-51 307.5 15.3 137 83-219 1-137 (140)
4 COG0105 Ndk Nucleoside diphosp 100.0 1E-46 2.2E-51 298.4 13.8 133 83-215 2-134 (135)
5 PRK14543 nucleoside diphosphat 100.0 1.5E-46 3.2E-51 312.9 15.0 150 81-230 3-167 (169)
6 PLN02619 nucleoside-diphosphat 100.0 1.1E-46 2.5E-51 326.2 14.0 151 81-231 86-236 (238)
7 PRK14545 nucleoside diphosphat 100.0 4.8E-46 1E-50 301.6 15.6 135 83-217 3-137 (139)
8 PRK14540 nucleoside diphosphat 100.0 1.4E-45 3.1E-50 297.1 15.6 133 83-215 2-134 (134)
9 PLN02931 nucleoside diphosphat 100.0 2.5E-45 5.5E-50 307.5 15.3 149 80-229 26-177 (177)
10 PRK00668 ndk mulitfunctional n 100.0 4.8E-45 1E-49 293.9 15.2 133 83-215 1-133 (134)
11 cd04415 NDPk7A Nucleoside diph 100.0 4.8E-45 1E-49 293.1 13.6 128 84-213 1-131 (131)
12 cd04418 NDPk5 Nucleoside dipho 100.0 1.3E-44 2.8E-49 290.9 14.0 129 84-214 1-132 (132)
13 PF00334 NDK: Nucleoside dipho 100.0 1.1E-44 2.4E-49 291.4 12.1 135 84-218 1-135 (135)
14 cd04413 NDPk_I Nucleoside diph 100.0 3.4E-44 7.3E-49 287.6 14.6 130 84-213 1-130 (130)
15 cd04414 NDPk6 Nucleoside dipho 100.0 4.2E-44 9.1E-49 288.9 14.3 131 84-214 1-135 (135)
16 cd04412 NDPk7B Nucleoside diph 100.0 8.1E-44 1.8E-48 286.8 14.0 130 84-213 1-134 (134)
17 KOG0888 Nucleoside diphosphate 100.0 1.2E-44 2.6E-49 296.5 9.1 149 83-231 5-156 (156)
18 cd00595 NDPk Nucleoside diphos 100.0 1.6E-43 3.5E-48 284.4 13.9 130 84-213 1-133 (133)
19 cd04416 NDPk_TX NDP kinase dom 100.0 1.9E-43 4.1E-48 283.9 13.2 129 84-213 1-132 (132)
20 smart00562 NDK These are enzym 100.0 6.6E-43 1.4E-47 281.1 14.7 134 84-217 1-134 (135)
21 PRK14544 nucleoside diphosphat 100.0 6.5E-42 1.4E-46 288.0 14.8 137 83-219 3-182 (183)
22 smart00676 DM10 Domains in hyp 97.0 7.1E-05 1.5E-09 57.9 -1.7 45 31-77 50-100 (104)
23 COG1799 Uncharacterized protei 74.4 9.1 0.0002 32.2 5.7 46 82-131 71-116 (167)
24 PRK00668 ndk mulitfunctional n 68.6 1.9 4.1E-05 34.5 0.4 34 39-75 100-133 (134)
25 smart00562 NDK These are enzym 63.9 2.7 5.8E-05 33.4 0.4 35 38-75 98-132 (135)
26 PF00334 NDK: Nucleoside dipho 61.4 2.1 4.6E-05 34.0 -0.6 37 37-76 97-133 (135)
27 cd04414 NDPk6 Nucleoside dipho 61.3 3 6.6E-05 33.4 0.3 33 39-74 103-135 (135)
28 PRK14541 nucleoside diphosphat 61.1 3 6.5E-05 33.8 0.2 35 38-75 99-133 (140)
29 PLN02931 nucleoside diphosphat 58.1 3.8 8.3E-05 34.6 0.4 36 39-77 131-166 (177)
30 cd04416 NDPk_TX NDP kinase dom 57.7 3.6 7.9E-05 32.7 0.2 33 38-73 100-132 (132)
31 PRK14545 nucleoside diphosphat 57.6 3.8 8.3E-05 33.1 0.3 35 38-75 101-135 (139)
32 cd04418 NDPk5 Nucleoside dipho 53.7 5.1 0.00011 32.0 0.4 33 39-74 100-132 (132)
33 PRK14540 nucleoside diphosphat 53.1 5.1 0.00011 32.1 0.3 34 39-75 101-134 (134)
34 PRK14542 nucleoside diphosphat 52.8 4.9 0.00011 32.4 0.2 35 38-75 99-133 (137)
35 cd04413 NDPk_I Nucleoside diph 52.4 5.4 0.00012 31.7 0.4 33 38-73 98-130 (130)
36 PTZ00093 nucleoside diphosphat 52.2 4.9 0.00011 32.9 0.1 35 38-75 100-134 (149)
37 PF04472 DUF552: Protein of un 51.9 25 0.00054 24.9 3.8 44 87-134 1-44 (73)
38 cd00595 NDPk Nucleoside diphos 46.2 7.2 0.00016 30.9 0.2 33 38-73 101-133 (133)
39 cd04412 NDPk7B Nucleoside diph 44.8 7.9 0.00017 30.9 0.2 32 39-73 103-134 (134)
40 PRK14543 nucleoside diphosphat 38.7 10 0.00023 31.8 0.1 35 39-76 109-153 (169)
41 cd04415 NDPk7A Nucleoside diph 36.4 13 0.00029 29.6 0.3 32 39-73 100-131 (131)
42 COG1844 Uncharacterized protei 30.7 1.4E+02 0.003 23.8 5.1 79 86-174 2-83 (125)
43 PF14454 Prok_Ub: Prokaryotic 30.1 44 0.00095 23.7 2.1 28 121-153 23-50 (65)
44 KOG0888 Nucleoside diphosphate 28.0 26 0.00057 29.1 0.7 35 39-76 107-141 (156)
45 PLN02619 nucleoside-diphosphat 27.6 20 0.00044 31.8 0.0 34 39-75 187-220 (238)
46 PF01408 GFO_IDH_MocA: Oxidore 27.2 1.6E+02 0.0034 21.7 4.9 47 84-134 63-109 (120)
47 TIGR03738 PRTRC_C PRTRC system 26.8 34 0.00074 24.4 1.0 28 121-153 22-49 (66)
48 cd06335 PBP1_ABC_ligand_bindin 25.6 3.5E+02 0.0077 24.0 7.7 74 85-170 139-214 (347)
49 TIGR00640 acid_CoA_mut_C methy 24.4 2.2E+02 0.0048 22.5 5.5 43 86-130 6-49 (132)
50 cd04883 ACT_AcuB C-terminal AC 22.3 1.5E+02 0.0032 19.8 3.7 30 83-115 40-69 (72)
51 cd06355 PBP1_FmdD_like Peripla 22.1 4.9E+02 0.011 23.2 8.0 41 84-124 133-174 (348)
52 PF07576 BRAP2: BRCA1-associat 20.1 86 0.0019 24.4 2.2 17 123-139 63-79 (110)
No 1
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=100.00 E-value=9.6e-48 Score=314.83 Aligned_cols=148 Identities=63% Similarity=1.154 Sum_probs=143.2
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
.|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|++++||++|+++|+|||+++|++.|+||
T Consensus 2 ~e~Tl~lIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~gk~ff~~Lv~~m~sGp~val~l~g~na 81 (149)
T PTZ00093 2 SERTFIMVKPDGVQRGLVGEIIKRFEKKGYKLVALKMLQPTPEIAEEHYKEHKGKPFFPGLVKYISSGPVVCMVWEGKNV 81 (149)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCEEEEEEeCCCH
Confidence 58999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCcccccccccccccc
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLR 230 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~ 230 (231)
|++||+++||+||++|.|+|||+.||.+.++|+|||||++++|.+|++|||+..++.+|......|++
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~NavH~Sds~e~A~~Ei~~fF~~~~~~~~~~~~~~~~~ 149 (149)
T PTZ00093 82 VKQGRKLLGATNPLESAPGTIRGDFCVDVGRNVIHGSDSVESAKREIALWFKPEELVSWTSHSSKWIY 149 (149)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccccccceeecCCCHHHHHHHHHHhCChhhccCccccchhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999987777753
No 2
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=2.1e-47 Score=308.84 Aligned_cols=136 Identities=44% Similarity=0.729 Sum_probs=132.6
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
.|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~Lv~~m~sGp~va~~l~g~na 80 (137)
T PRK14542 1 MSRTFIMIKPDGVKNKHVGNILQRIEKEGFKILGLKYLKLSLEDAKQFYKVHSARPFYNDLCNYMSSGPIVAAALERDNA 80 (137)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCH
Confidence 37999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCcc
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 218 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~ 218 (231)
|++||+++||+||..|.|+|||++||.+.++|+|||||++++|++||++||++.++
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~~~ 136 (137)
T PRK14542 81 VLHWREVIGATDPKEAAAGTIRALYAESKEANAVHGSDSDANAALEISFFFKGNEL 136 (137)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcCcccceeEECCCCHHHHHHHHHHcCChhhc
Confidence 99999999999999999999999999999999999999999999999999997664
No 3
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=5.3e-47 Score=307.54 Aligned_cols=137 Identities=40% Similarity=0.692 Sum_probs=133.7
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
+|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 1 ~e~TlaiIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~e~a~~~Y~~~~~k~ff~~Lv~~m~sgp~va~~l~g~na 80 (140)
T PRK14541 1 MERTLTILKPDCVRKQLIGAVIDKIERAGFRVVAMKKTRLTKETAGEFYAVHRERPFYGELVEFMSSGPCVPMILEKENA 80 (140)
T ss_pred CceEEEEECcchhhcCchHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEecCcH
Confidence 48999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccc
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 219 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~ 219 (231)
|++||+++||+||..|.|+|||++||.+.++|+|||||++++|+||++||||+.++.
T Consensus 81 v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vHgSds~e~A~~Ei~~fF~~~~~~ 137 (140)
T PRK14541 81 VADFRTLIGATDPAEAAEGTVRKLYADSKGENIVHGSDSAENAAIEAGFFFSAEEVV 137 (140)
T ss_pred HHHHHHHhCCCCchhCCCCCchHHhcccccceeEECCCCHHHHHHHHHHcCChhhhc
Confidence 999999999999999999999999999999999999999999999999999988764
No 4
>COG0105 Ndk Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1e-46 Score=298.45 Aligned_cols=133 Identities=56% Similarity=1.002 Sum_probs=131.5
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
+|+||+|||||+++++++|+||++++++||+|+++||+++++++|++||.+|+++|||.+|+++|+|||+++++|+|+||
T Consensus 2 ~erT~~iiKPDaV~R~LIG~IisrfE~~Glkiva~K~~~~~~e~Ae~~Y~~h~~kpFf~~Lv~fitSgPvv~~VleGe~a 81 (135)
T COG0105 2 MERTLSIIKPDAVKRGLIGEIISRFEKKGLKIVALKMVQLSRELAENHYAEHKGKPFFGELVEFITSGPVVAMVLEGENA 81 (135)
T ss_pred cceEEEEECcchhhhhhHHHHHHHHHHCCCEEEeeeeeccCHHHHHHHHHHHcCCCccHHHHhheecCcEEEEEEecHhH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCC
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 215 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~ 215 (231)
|+.+|+++|.|||..|.|||||+.||.+...|.||||||+++|+|||++||++
T Consensus 82 i~~~R~l~GaTnp~~A~pGTIRgdfa~~~~~N~vHgSDs~esA~rEIa~~F~~ 134 (135)
T COG0105 82 ISVVRKLMGATNPANAAPGTIRGDFALSVGENVVHGSDSPESAEREIALFFSK 134 (135)
T ss_pred HHHHHHHHCCCCcccCCCCeEeeehhcccCcceEEccCCHHHHhHHhhhccCC
Confidence 99999999999999999999999999999999999999999999999999985
No 5
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.5e-46 Score=312.94 Aligned_cols=150 Identities=37% Similarity=0.676 Sum_probs=144.3
Q ss_pred ccceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHH-----HhcCCCChHHHHHHhccCceEEE
Q 026906 81 EQVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYK-----DLNSKPFFPKLIEYITSGPVVCM 155 (231)
Q Consensus 81 ~~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~-----~~~~~~~~~~Lv~~mtSGpvvaL 155 (231)
...|+||+|||||++.++++|+||++|+++||+|+++||++|++++|++||. +|++++||++|+++|+|||+++|
T Consensus 3 ~~~e~Tl~iIKPDav~~~~~G~Ii~~ie~~Gf~I~~~k~~~lt~e~a~~fY~~~~~~~h~gk~ff~~Lv~~mtsGP~val 82 (169)
T PRK14543 3 TLIQKTLCIIKPDGVRRGLIGNVVSRFERVGLKIVAAKMLLVDRSMAEKHYLYDDIAVRHGEAVWKSLIKFISSSPVFVF 82 (169)
T ss_pred CccceEEEEECcchhhcCchHHHHHHHHHCCCEEEeeeeccCCHHHHHHHhccCccccccCCchHHHHHHHHccCCeEEE
Confidence 3579999999999999899999999999999999999999999999999995 79999999999999999999999
Q ss_pred EEccchhHHHHHHHhCCCCCCCCCCCChhcccccC----------CCCcEEEcCCChhhHHHHHhhccCCCccccccccc
Q 026906 156 AWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQ----------TGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQ 225 (231)
Q Consensus 156 ~L~g~naV~~~r~liGp~dp~~A~P~sLRa~fg~~----------~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~ 225 (231)
+|.|+|||+.||+++||++|..|.|+|||+.||.+ .++|+|||||++++|+|||+||||+.++.+|.+..
T Consensus 83 vl~g~naI~~~R~l~Gpt~p~~a~p~tIR~~fg~~~~~~~~~~~~~~rN~vH~SDs~esA~rEi~~fF~~~e~~~~~~~~ 162 (169)
T PRK14543 83 VVEGVESVEVVRKFCGSTEPKLAIPGTIRGDFSYHSFNYANEKGFSVYNVIHASANEDDALREIPIWFKDNEILTYKRDD 162 (169)
T ss_pred EEECCCHHHHHHHHhCCCCccccCCCcchhhhcccccccccccccceeeEEECCCCHHHHHHHHHHhCCccccccccccc
Confidence 99999999999999999999999999999999997 68999999999999999999999999999999998
Q ss_pred ccccc
Q 026906 226 AQWLR 230 (231)
Q Consensus 226 ~~~~~ 230 (231)
+-|.+
T Consensus 163 ~~~~~ 167 (169)
T PRK14543 163 ECEHY 167 (169)
T ss_pred ceeEe
Confidence 88875
No 6
>PLN02619 nucleoside-diphosphate kinase
Probab=100.00 E-value=1.1e-46 Score=326.24 Aligned_cols=151 Identities=56% Similarity=1.048 Sum_probs=147.2
Q ss_pred ccceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccc
Q 026906 81 EQVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGA 160 (231)
Q Consensus 81 ~~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~ 160 (231)
...|+||+|||||++.+|++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+|||+++|+|.|+
T Consensus 86 ~~~ErTlaiIKPDaV~rglvGeII~rIe~~Gf~Iva~Kmv~Lt~e~AeefY~ehkgKpFf~~Lv~fMtSGPvvamvL~Ge 165 (238)
T PLN02619 86 AEMERTFIAIKPDGVQRGLISEIISRFERKGFKLVAIKVVVPSKEFAQKHYHDLKERPFFNGLCDFLSSGPVVAMVWEGE 165 (238)
T ss_pred chhceEEEEECcchhhcCchHHHHHHHHHCCCEEEehhhccCCHHHHHHHHHHhcCCCcHHHHHHHHhcCCeEEEEEECC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 161 GVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 161 naV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
|||++||+++||+||..+.|+|||+.||.+.++|+|||||++++|++||+|||+..++.+|.+..+.|+++
T Consensus 166 naV~~~R~LiGpTdP~~A~PgTIRg~fG~~~~rNaVHgSDS~EsA~rEI~~fF~~~ei~~y~~~~~~~~y~ 236 (238)
T PLN02619 166 GVIKYGRKLIGATDPQKSEPGTIRGDLAVVVGRNIIHGSDGPETAKDEINLWFKPEELVSYTSNAEKWIYG 236 (238)
T ss_pred cHHHHHHHHhCCCCccccCCCcchhhhcccccceeeecCCCHHHHHHHHHHhCCHHhccCCcccchhhhcc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999874
No 7
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=4.8e-46 Score=301.59 Aligned_cols=135 Identities=38% Similarity=0.627 Sum_probs=132.2
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
.|+||+|||||++.++++|+||++|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~ff~~Lv~~m~sGp~va~~l~g~na 82 (139)
T PRK14545 3 GNRTFTMIKPDAVENGHIGGILDMITAAGFRIVAMKLTQLTVADAETFYAVHAERPFYGELVEFMSRGPIVAAILEKENA 82 (139)
T ss_pred cceEEEEECchhhhcCcHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCEEEEEEecCCH
Confidence 68999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCc
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGE 217 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~ 217 (231)
|++||+++||+||+.|.|+|||+.||.+.++|+|||||++++|.+|++|||+..+
T Consensus 83 v~~~R~l~Gpt~p~~A~p~siR~~yg~~~~~N~vH~Sds~e~A~~Ei~~fF~~~~ 137 (139)
T PRK14545 83 VEDFRTLIGATNPADAAEGTIRKKYAKSIGENAVHGSDSDENAQIEGAFHFAGRE 137 (139)
T ss_pred HHHHHHHhCCCCcccCCCCChhHHhcccccceeEECCCCHHHHHHHHHHhCCccc
Confidence 9999999999999999999999999999999999999999999999999998765
No 8
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=1.4e-45 Score=297.15 Aligned_cols=133 Identities=46% Similarity=0.862 Sum_probs=130.5
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
.|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|++++||+.|+++|+|||+++|+|.|+||
T Consensus 2 ~e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~k~f~~~L~~~m~sgp~val~l~g~na 81 (134)
T PRK14540 2 KERTFVALKPDAVERKLIGKIIQRFENKGFEIVEMKMLKLTREMAEEYYEEHKGKEFYERLINFMTSGRIVAMVIEGENA 81 (134)
T ss_pred ceeEEEEECcchhhcCchHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHccCCeEEEEEeCCCh
Confidence 58999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCC
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 215 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~ 215 (231)
|++||+++||++|+.|.|+|||+.||.+.++|+|||||++++|.+|++|||++
T Consensus 82 v~~~R~l~Gpt~p~~a~p~siR~~fg~~~~~N~vH~Sds~~~a~~E~~~fF~~ 134 (134)
T PRK14540 82 ISTVRKMIGKTNPAEAEPGTIRGDFGLYTPANIIHASDSKESAEREIKLFFGE 134 (134)
T ss_pred HHHHHHHhCCCCcccCCCCcchhhhcccccceeEECCCCHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999984
No 9
>PLN02931 nucleoside diphosphate kinase family protein
Probab=100.00 E-value=2.5e-45 Score=307.53 Aligned_cols=149 Identities=36% Similarity=0.554 Sum_probs=139.9
Q ss_pred cccceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEcc
Q 026906 80 MEQVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 159 (231)
Q Consensus 80 ~~~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g 159 (231)
....|+|++|||||++.++++|+||++|+++||+|+++||++|++++|++||.+|++++||++|+++|+|||+++|+|.|
T Consensus 26 ~~~~erTlalIKPdav~~~~~G~Il~~I~~~Gf~I~~~K~~~Lt~e~a~~fY~~h~gk~ff~~Lv~~mtSGP~vam~L~g 105 (177)
T PLN02931 26 ASEEERTLAMIKPDGLSGNYTERIKEVILESGFSIVKEMTTQLDEDRASLFYAEHSSRSFFPSLVKYMTSGPVLVMVLEK 105 (177)
T ss_pred CCcceeEEEEECchhhhcccHHHHHHHHHHCCCEEEeeeeecCCHHHHHHHHHHhCCCccHHHHHHHHHhCCeEEEEEec
Confidence 35579999999999998888999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhCCCCCCCC---CCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccc
Q 026906 160 AGVVASARKLIGSTDPLQA---EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWL 229 (231)
Q Consensus 160 ~naV~~~r~liGp~dp~~A---~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~ 229 (231)
+|||++||+++||+||..| .|+|||++||.+.++|+|||||++++|++||++||+....+.-+. +||+|
T Consensus 106 ~naV~~~R~liGptdp~~A~~~~P~sIRa~fG~~~~rN~vHgSDs~e~A~~Ei~~fF~~~~~~~~~~-~~~~~ 177 (177)
T PLN02931 106 ENAVSDWRTLIGPTDARKAKISHPNSIRAMCGLDSEKNCVHGSDSPESAEREISFFFGDVSSGDVAS-QHDEL 177 (177)
T ss_pred CCHHHHHHHHhCCCChhhhccCCCCCchHHhcCcccccceECCCCHHHHHHHHHHhCCccccccccc-ccCcC
Confidence 9999999999999999988 599999999999999999999999999999999999877665444 66654
No 10
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=100.00 E-value=4.8e-45 Score=293.90 Aligned_cols=133 Identities=57% Similarity=1.016 Sum_probs=130.4
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
+|+|++|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|++++||+.|+++|+|||+++|+|.|+||
T Consensus 1 ~e~Tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~fy~~~~~k~f~~~Lv~~m~sgp~~al~l~g~na 80 (134)
T PRK00668 1 MERTFSIIKPDAVQRGLIGEIISRFEKKGLKIVALKMMQLSRELAEGHYAEHKEKPFFGELVEFMTSGPVVVMVLEGENA 80 (134)
T ss_pred CceEEEEECchHhhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHhccCCeEEEEEeCchH
Confidence 47999999999998888999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCC
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 215 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~ 215 (231)
|++||+++||+||..+.|+|||++||.+.++|+|||||++++|.+|++||||+
T Consensus 81 v~~~r~l~Gp~~p~~a~p~siR~~~g~~~~~N~vH~sds~~~a~~Ei~~fF~~ 133 (134)
T PRK00668 81 IAKVRELMGATNPAEAAPGTIRGDFALSIGENVVHGSDSPESAAREIALFFSE 133 (134)
T ss_pred HHHHHHHhCCCCccccCCCcchhhhccccccccEECCCCHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999986
No 11
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=4.8e-45 Score=293.06 Aligned_cols=128 Identities=36% Similarity=0.673 Sum_probs=125.7
Q ss_pred eEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchhH
Q 026906 84 EETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVV 163 (231)
Q Consensus 84 E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~naV 163 (231)
|+||+|||||++.+ +|+||++|+++||.|+++||++|++++|++||.+|++++||++|+++|+|||+++|+|.|+|||
T Consensus 1 erTl~iIKPdav~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~gk~f~~~Lv~~m~sgp~va~~l~g~nav 78 (131)
T cd04415 1 EKTLALIKPDAYSK--IGKIIQIIEDAGFTITKAKMTKLSRKEAQDFYAEHQSKPFYNELVQFMTSGPIVAMELVGDDAI 78 (131)
T ss_pred CeEEEEECcHHHHh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEECCcHH
Confidence 68999999999986 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCC---CCCChhcccccCCCCcEEEcCCChhhHHHHHhhcc
Q 026906 164 ASARKLIGSTDPLQA---EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 213 (231)
Q Consensus 164 ~~~r~liGp~dp~~A---~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fF 213 (231)
++||+++||+||..| .|+|||++||.+.++|+|||||++++|++||++||
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~a~~Ei~~fF 131 (131)
T cd04415 79 SEWRKLLGPTNSSVARSDAPNSIRALFGTDGTRNAAHGSDSVASAARELEFFF 131 (131)
T ss_pred HHHHHHhCCCChHHhhccCCCcchhhhcccccceeEECCCCHHHHHHHHHhhC
Confidence 999999999999988 79999999999999999999999999999999998
No 12
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=100.00 E-value=1.3e-44 Score=290.87 Aligned_cols=129 Identities=32% Similarity=0.578 Sum_probs=126.6
Q ss_pred eEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchhH
Q 026906 84 EETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVV 163 (231)
Q Consensus 84 E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~naV 163 (231)
|+||+|||||++++ +|+||++|+++||+|+++||++|++++|++||.+|.+++||+.|+++|+|||+++|+|.|+|||
T Consensus 1 e~Tl~iIKPda~~~--~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~Lv~~m~sgp~val~l~g~~aV 78 (132)
T cd04418 1 ERTLAIIKPDAVHK--AEEIEDIILESGFTIVQKRKLQLSPEQCSDFYAEHYGKMFFPHLVAYMSSGPIVAMVLARHNAI 78 (132)
T ss_pred CeEEEEECcHHHhh--HHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCccHHHHHHHHhcCCeEEEEEecCCHH
Confidence 68999999999987 8999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCC---CCCChhcccccCCCCcEEEcCCChhhHHHHHhhccC
Q 026906 164 ASARKLIGSTDPLQA---EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFK 214 (231)
Q Consensus 164 ~~~r~liGp~dp~~A---~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp 214 (231)
++||+++||+||+.| .|+|||++||.+.++|+|||||++++|++||++|||
T Consensus 79 ~~~R~l~Gpt~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF~ 132 (132)
T cd04418 79 SYWKELLGPTNSLKAKETHPDSLRAIYGTDDLRNAVHGSDSFSSAEREIRFMFP 132 (132)
T ss_pred HHHHHHHCCCChHHhccCCCCChHHhhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 999999999999998 699999999999999999999999999999999997
No 13
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=100.00 E-value=1.1e-44 Score=291.35 Aligned_cols=135 Identities=43% Similarity=0.796 Sum_probs=124.4
Q ss_pred eEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchhH
Q 026906 84 EETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVV 163 (231)
Q Consensus 84 E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~naV 163 (231)
|+||+|||||++.++++|+||++|+++||.|+++||++|++++|++||..|.++++|+.++++|+|||+++|+|.|+|||
T Consensus 1 E~tl~lIKPda~~~~~~g~Ii~~l~~~Gf~I~~~k~~~lt~e~a~~~y~~~~~~~~~~~lv~~m~sgp~v~l~l~g~~av 80 (135)
T PF00334_consen 1 ERTLALIKPDAVARGHAGEIIDRLEEAGFEIVAMKMVQLTREEAREFYEEHKGKPFFDALVDFMSSGPSVALVLEGENAV 80 (135)
T ss_dssp EEEEEEE-HHHHHTT-HHHHHHHHHHHT-EEEEEEEEEETHHHHHHHTGGGTTSTTHHHHHHHHTSSEEEEEEEESTTHH
T ss_pred CeEEEEEChhHhhccchHHHHHHHHHcCCeeeehhhhhhhHHHHheEEEeecCCcceecccceeecCCcEEEEeecchhh
Confidence 79999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCcc
Q 026906 164 ASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 218 (231)
Q Consensus 164 ~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~ 218 (231)
++||+++||+||++|.|+|||++||.+..+|++||||++++|.||+++|||+.++
T Consensus 81 ~~~r~l~Gp~dp~~a~p~slR~~~g~~~~~N~vH~sd~~~~a~rE~~~~F~~~~~ 135 (135)
T PF00334_consen 81 EKWRQLCGPTDPEEAAPGSLRARYGTDIIRNAVHGSDSPEDAEREIAFFFPEFEI 135 (135)
T ss_dssp HHHHHHH--SSGGGSSTTSHHHHH-SSSTG-SEEE-SSHHHHHHHHHHHSTGGGS
T ss_pred HHHHHhcCCcchhhhccccchhceeecCCCCeEECCCCHHHHHHHHHHcCCcccC
Confidence 9999999999999999999999999999999999999999999999999998764
No 14
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=100.00 E-value=3.4e-44 Score=287.59 Aligned_cols=130 Identities=60% Similarity=1.090 Sum_probs=127.9
Q ss_pred eEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchhH
Q 026906 84 EETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVV 163 (231)
Q Consensus 84 E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~naV 163 (231)
|+|++|||||++.++++|+||++|.++||.|+++||++|++++|++||.+|++++||++|+++|+|||+++|+|.|+|||
T Consensus 1 e~Tl~lIKPda~~~~~~g~Il~~i~~~Gf~I~~~k~~~ls~~~a~~~y~~~~~k~~~~~l~~~m~sgp~~al~l~~~nav 80 (130)
T cd04413 1 ERTLVIIKPDGVQRGLIGEIISRFERKGLKIVALKMLQLTEELAEEHYAEHKGKPFFPELVEFMTSGPVVAMVLEGENAV 80 (130)
T ss_pred CeeEEEECchHhhcCcHHHHHHHHHHCCCEEEEeeeccCCHHHHHHHhhhhcCCchHHHHHHHHhcCCEEEEEEeCCcHH
Confidence 68999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhcc
Q 026906 164 ASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 213 (231)
Q Consensus 164 ~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fF 213 (231)
++||+++||+||+.+.|+|||++||.+.++|+|||||++++|.+|++|||
T Consensus 81 ~~~r~l~Gp~~~~~a~p~slR~~~G~~~~~NavH~sd~~~~a~~E~~~fF 130 (130)
T cd04413 81 KTVRKLMGATNPADAAPGTIRGDFALSIGRNIVHGSDSVESAEREIALWF 130 (130)
T ss_pred HHHHHHhCCCCccccCCCCchhhhcccccccceECCCCHHHHHHHHHhhC
Confidence 99999999999999999999999999999999999999999999999998
No 15
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=100.00 E-value=4.2e-44 Score=288.89 Aligned_cols=131 Identities=31% Similarity=0.550 Sum_probs=125.7
Q ss_pred eEEEEEEcCcccccCch-HHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 84 EETYIMVKPDGVQRGLV-GDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 84 E~Tl~LIKPdav~~~~~-G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
|+||+|||||++.++.. |.|++.|+++||.|+++||++||+++|++||.+|++++||++|+++|+|||+++|+|.|+||
T Consensus 1 e~Tl~lIKPda~~~~~~~~~I~~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~f~~~Lv~~m~sgp~val~l~~~na 80 (135)
T cd04414 1 QLTLALIKPDAVAHPLALEAVRQLILSNGFTIVRKKELRWTTEDAERFYAEHKGKFFYDRLVSFMTSGPSWALILAHENA 80 (135)
T ss_pred CeEEEEECchHHhCCchHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhCCCCchHHHHHHHhcCCeEEEEEEcCCH
Confidence 68999999999988765 56777789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCC---CCCChhcccccCCCCcEEEcCCChhhHHHHHhhccC
Q 026906 163 VASARKLIGSTDPLQA---EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFK 214 (231)
Q Consensus 163 V~~~r~liGp~dp~~A---~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp 214 (231)
|++||+++||+||..| .|+|||++||.+.++|+|||||++++|++||++|||
T Consensus 81 V~~~r~l~Gp~~p~~A~~~~p~siR~~fg~~~~~N~vH~Sds~e~A~~Ei~~fF~ 135 (135)
T cd04414 81 IKTWRALMGPTKVFRARASAPDSIRGLYGLTDTRNATHGSDSPASAQREIALFFP 135 (135)
T ss_pred HHHHHHHhCCCChhHhccCCCCCcHHHhcCcccceeEECCCCHHHHHHHHHhcCC
Confidence 9999999999999877 699999999999999999999999999999999997
No 16
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=100.00 E-value=8.1e-44 Score=286.82 Aligned_cols=130 Identities=32% Similarity=0.603 Sum_probs=127.5
Q ss_pred eEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCC-CChHHHHHHhccCceEEEEEccchh
Q 026906 84 EETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSK-PFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 84 E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~-~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
++||+|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|+++ +||+.|+++|+|||+++|+|.|+||
T Consensus 1 ~~Tl~lIKPda~~~~~~g~Ii~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~~l~~~m~sGp~val~l~g~na 80 (134)
T cd04412 1 NCTVCIIKPHAVSHGLLGEILQQILDEGFEITALQMFNLTRANAEEFLEVYKGVVPELPAMVDELTSGPCIALEIAGENA 80 (134)
T ss_pred CcEEEEECchHhhcCchHHHHHHHHHCCCEEEEeEeecCCHHHHHHHHHHHcCccchHHHHHHHHhcCCeEEEEEECCcH
Confidence 589999999999999999999999999999999999999999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCC---CCCChhcccccCCCCcEEEcCCChhhHHHHHhhcc
Q 026906 163 VASARKLIGSTDPLQA---EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 213 (231)
Q Consensus 163 V~~~r~liGp~dp~~A---~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fF 213 (231)
|++||+++||+||..| .|+|||+.||.+.++|+|||||++++|++|+++||
T Consensus 81 v~~~r~l~Gpt~p~~A~~~~p~siR~~yg~~~~~N~vH~Sds~~~A~~e~~~fF 134 (134)
T cd04412 81 VKTFREFCGPFDPEIAKQLRPNTLRARYGKDKVQNAVHCTDLPEDGPLELKFFF 134 (134)
T ss_pred HHHHHHHhCCCChHHhcccCCCCeehhhcCcCcceeEEcCCCHHHHHHHHHhhC
Confidence 9999999999999888 69999999999999999999999999999999998
No 17
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=100.00 E-value=1.2e-44 Score=296.49 Aligned_cols=149 Identities=58% Similarity=1.020 Sum_probs=146.3
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
.|+|+++||||++++|++|+||.+++++||+|++.|+++++++++++||.+|++++||+.|+.+|+|||++||+|+|.||
T Consensus 5 ~e~tfi~iKpd~v~~~li~~ii~r~~~~gf~i~~~k~~~~s~~~~e~~Y~~~~~~~Ff~~Lv~~m~SGPvvamv~~g~~~ 84 (156)
T KOG0888|consen 5 LERTFILIKPDGVQRGLIGEIIKRFEDKGFKIVALKLVQLSKELLEEHYSDLKSKPFFPGLVEYMSSGPVVAMVLEGDNV 84 (156)
T ss_pred hhhhhheeCcchhhhhhhHHHHHHHHHcCcchhhheeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCcceehhhcCCCH
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCC---CCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 163 VASARKLIGSTDPLQA---EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 163 V~~~r~liGp~dp~~A---~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
|+.||+++||++|+.| .|+|||++||++..+|++|||||.++|+|||++|||..++..|....++|++|
T Consensus 85 V~~~r~llG~t~~~~a~~~~pgsir~~f~~~~~rn~~HgSDs~~sA~rEi~~~F~~~e~~~~~~~~~~~~~e 156 (156)
T KOG0888|consen 85 VQYWRALLGPTNPAAARAAAPGSIRGDFGVDDGRNSIHGSDSVESAEREIKLWFPEFELVVYESQPERWLYE 156 (156)
T ss_pred HHHHHHHhCCCCcccccccCCCCeeeeecccCCCCccccCCcHHHHHHHHHhcCchhhheecccchhhhhcC
Confidence 9999999999999988 79999999999999999999999999999999999999999999999999886
No 18
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=100.00 E-value=1.6e-43 Score=284.40 Aligned_cols=130 Identities=42% Similarity=0.794 Sum_probs=127.2
Q ss_pred eEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchhH
Q 026906 84 EETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVV 163 (231)
Q Consensus 84 E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~naV 163 (231)
|+|++|||||++.+|++|+||++|+++||.|+++||++|++++|++||.+|.+++||++|+++|+|||+++|+|.|+|||
T Consensus 1 e~tl~iIKPd~~~~~~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~~Y~~~~~~~~~~~lv~~m~sGp~v~l~l~g~~av 80 (133)
T cd00595 1 ERTLALIKPDAVAEGLLGEIIMRIEDAGFEIVAMKELHLTEEQAEEFYVEHKGRPFFPDLVQFMSSGPVVAMILEKDNAV 80 (133)
T ss_pred CcEEEEECchHHhcCcHHHHHHHHHHcCCEEEEeeeecCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEecCChH
Confidence 68999999999998889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCC---CCCChhcccccCCCCcEEEcCCChhhHHHHHhhcc
Q 026906 164 ASARKLIGSTDPLQA---EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 213 (231)
Q Consensus 164 ~~~r~liGp~dp~~A---~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fF 213 (231)
++||+++||+||+.| .|+|||++||.+.++|+|||||++++|.+||+|||
T Consensus 81 ~~~r~l~Gp~~p~~a~~~~p~siR~~~g~~~~~N~vH~Sd~~~~a~~Ei~~~F 133 (133)
T cd00595 81 GEWREMLGPTNPEIARHLAPGSLRADFGTDVLRNAVHGSDSVESAAREIAFFF 133 (133)
T ss_pred HHHHHHhCCCChhHhccCCCCChHHHhcCcccceeEECCCCHHHHHHHHHhhC
Confidence 999999999999866 69999999999999999999999999999999998
No 19
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=100.00 E-value=1.9e-43 Score=283.89 Aligned_cols=129 Identities=33% Similarity=0.606 Sum_probs=126.2
Q ss_pred eEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchhH
Q 026906 84 EETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVV 163 (231)
Q Consensus 84 E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~naV 163 (231)
|+||+|||||++.+ ++|+||++|+++||.|+++||++|++++|++||.+|++++||++|+++|+|||+++|+|.|+|||
T Consensus 1 e~Tl~iIKPdav~~-~~g~Il~~i~~~Gf~I~~~k~~~lt~~~a~~fY~~~~~~~~~~~lv~~m~sgp~v~l~l~~~~av 79 (132)
T cd04416 1 EYTLALIKPDAVAE-KKDEILEKIKEAGFEILAQKEMVLTEEQAREFYKEHEEEDYFEDLVEFMTSGPSLILVLSKENAV 79 (132)
T ss_pred CeEEEEEChHHHHH-HHHHHHHHHHHCCCEEEEeeeecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCeEEEEEeCCCHH
Confidence 68999999999977 79999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCC---CCCChhcccccCCCCcEEEcCCChhhHHHHHhhcc
Q 026906 164 ASARKLIGSTDPLQA---EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWF 213 (231)
Q Consensus 164 ~~~r~liGp~dp~~A---~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fF 213 (231)
++||+++||++|..| .|+|||++||.+.++|+|||||++++|++||++||
T Consensus 80 ~~~r~l~Gp~~p~~A~~~~p~slR~~fg~~~~~N~vH~Sds~~~a~~Ei~~fF 132 (132)
T cd04416 80 EEWRELMGPTDPEEAKEEKPDSLRAQFARDHLSNAVHGSSSAEEAEKEIDFFF 132 (132)
T ss_pred HHHHHHhCCCChHHhhccCCCChHHHhcCcccceeEECCCCHHHHHHHHHHhC
Confidence 999999999999888 69999999999999999999999999999999998
No 20
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=100.00 E-value=6.6e-43 Score=281.15 Aligned_cols=134 Identities=57% Similarity=0.995 Sum_probs=130.6
Q ss_pred eEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchhH
Q 026906 84 EETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGVV 163 (231)
Q Consensus 84 E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~naV 163 (231)
|+|++|||||++.++++|+||++|+++||.|+++||++|++++|++||.+|.++++|+.|+++|+|||+++|+|.|+|||
T Consensus 1 e~tl~iIKPda~~~~~~g~Il~~i~~~gf~I~~~k~~~lt~~~a~~~y~~~~~~~~~~~lv~~m~sgp~~~l~l~g~nav 80 (135)
T smart00562 1 ERTLAIIKPDAVQRGLIGEIISRFERKGFKIVAMKMLQLTEELAEEFYAEHKGKPFFNDLVEFMTSGPVVAMVLEGEDAV 80 (135)
T ss_pred CeEEEEECchhhhcccHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHhcCCchHHHHHHHhhcCCeEEEEEecCCHH
Confidence 68999999999988889999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCc
Q 026906 164 ASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGE 217 (231)
Q Consensus 164 ~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~ 217 (231)
++||+++||++|..+.|+|||++||.+.++|+|||||++++|.+|+++|||..+
T Consensus 81 ~~~r~l~Gp~~~~~~~p~slR~~~G~~~~~N~vH~sd~~~~a~~e~~~~F~~~~ 134 (135)
T smart00562 81 KTWRTLMGPTDPREAAPGTIRGDFGLDIGRNAVHGSDSPESAEREIALFFPESE 134 (135)
T ss_pred HHHHHHhCCCChhhcCCcchHHhhcccccceeEECCCCHHHHHHHHHHcCCccc
Confidence 999999999999888999999999999999999999999999999999999765
No 21
>PRK14544 nucleoside diphosphate kinase; Provisional
Probab=100.00 E-value=6.5e-42 Score=288.02 Aligned_cols=137 Identities=46% Similarity=0.826 Sum_probs=130.7
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHh----------------------------
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDL---------------------------- 134 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~---------------------------- 134 (231)
.|+||+|||||++.++++|+||++|+++||.|+++||+++|+++|++||.++
T Consensus 3 ~E~TlviIKPdav~~~~~G~Il~ri~~~Gf~I~~~Km~~lt~e~a~~fY~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~ 82 (183)
T PRK14544 3 IERTLVILKPDAVKRGLVGEIISRFEKAGLKIVAMKMVKATPEQIERFYPSSEEWYRSVGNKLLKAYQELGIDPRARLGT 82 (183)
T ss_pred cceEEEEECchhhhcccHHHHHHHHHHCCCEEEEeEEecCCHHHHHHHHHHhhhhhhhhhhhhhhhhhhccccccccccc
Confidence 6899999999999988899999999999999999999999999999999954
Q ss_pred -----cCCCChHHHHHHhccCceEEEEEccchhHHHHHHHhCCCCCCCCCCCChhcccccCC----------CCcEEEcC
Q 026906 135 -----NSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQT----------GRNVVHGS 199 (231)
Q Consensus 135 -----~~~~~~~~Lv~~mtSGpvvaL~L~g~naV~~~r~liGp~dp~~A~P~sLRa~fg~~~----------~~N~vHgS 199 (231)
.+++||++|+++|+|||+++|+|.|+|||++||+++||++|..|.|+|||+.||.+. ++|+||||
T Consensus 83 ~~~~~~gk~~~~~Lv~~m~Sgpvvalvl~g~naV~~~R~liGpt~p~~A~P~TIR~~fg~~~~~~~~~~~~~~~NavH~S 162 (183)
T PRK14544 83 DDPVEVGKKVKESLVKYMTSGPIVAMVLKGNRAVEVVRKLVGPTSPHKAPPGTIRGDYSIDSPDLAAEEGRVVYNLVHAS 162 (183)
T ss_pred ccccccCCchhHHHHHHhccCCEEEEEEECCCHHHHHHHHhCCCCccccCCCCchhhhcccccccccccccceeeEEECC
Confidence 688999999999999999999999999999999999999999999999999999884 79999999
Q ss_pred CChhhHHHHHhhccCCCccc
Q 026906 200 DSPENGKREIGLWFKEGELC 219 (231)
Q Consensus 200 ds~e~A~rEi~~fFp~~~~~ 219 (231)
|++++|++||++||++.++.
T Consensus 163 ds~e~A~rEi~~fF~~~~~~ 182 (183)
T PRK14544 163 DSPEEAEREIKFWFREEEIL 182 (183)
T ss_pred CCHHHHHHHHHHhCChhhcc
Confidence 99999999999999987763
No 22
>smart00676 DM10 Domains in hypothetical proteins in Drosophila, C. elegans and mammals. Occurs singly in some nucleoside diphosphate kinases.
Probab=97.05 E-value=7.1e-05 Score=57.94 Aligned_cols=45 Identities=16% Similarity=-0.036 Sum_probs=41.1
Q ss_pred cceeecchhhh------ccCCCCcccccCCCccCCCchhhhcccccccccccc
Q 026906 31 KLTLRTTSHLA------AFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLV 77 (231)
Q Consensus 31 r~fLkr~~~~~------~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~~~ 77 (231)
.+||||++.|. .++..+||++|++|+++ +|+..|.++ |.||++++
T Consensus 50 g~fLkR~rvp~~~~~~~~~y~~~Dl~vG~~v~i~-gr~f~I~d~-D~fTr~~~ 100 (104)
T smart00676 50 GTFLRRQRVPKPPPDDPEYYHASDLNVGTTINVF-GRQFRIYDC-DEFTRNYL 100 (104)
T ss_pred ccEeeeeEcCCCCccccCccCHHHcCCCCEEEEe-CEEEEEEEC-CHHHHHHH
Confidence 89999998764 35899999999999999 999999999 99999876
No 23
>COG1799 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=74.36 E-value=9.1 Score=32.15 Aligned_cols=46 Identities=11% Similarity=0.181 Sum_probs=39.5
Q ss_pred cceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHH
Q 026906 82 QVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHY 131 (231)
Q Consensus 82 ~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y 131 (231)
....++++++|..+.. +-+|.+.|++....+++++ .|++++|++..
T Consensus 71 ~~~s~iv~~ePr~yed--a~~ia~~lk~~k~Vvinl~--~m~~~qArRiv 116 (167)
T COG1799 71 QDSSKIVLLEPRKYED--AQEIADYLKNRKAVVINLQ--RMDPAQARRIV 116 (167)
T ss_pred CCceEEEEecCccHHH--HHHHHHHHhcCceEEEEee--eCCHHHHHHHH
Confidence 3568999999999988 8899999999888888877 67899999883
No 24
>PRK00668 ndk mulitfunctional nucleoside diphosphate kinase/apyrimidinic endonuclease/3'-; Validated
Probab=68.56 E-value=1.9 Score=34.46 Aligned_cols=34 Identities=9% Similarity=-0.005 Sum_probs=31.0
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
++|+.++.+...|. +|.+|....+.+++++|||+
T Consensus 100 siR~~~g~~~~~N~---vH~sds~~~a~~Ei~~fF~~ 133 (134)
T PRK00668 100 TIRGDFALSIGENV---VHGSDSPESAAREIALFFSE 133 (134)
T ss_pred cchhhhcccccccc---EECCCCHHHHHHHHHHhCCC
Confidence 67888999999888 99999999999999999985
No 25
>smart00562 NDK These are enzymes that catalyze nonsubstrate specific conversions of nucleoside diphosphates to nucleoside triphosphates. These enzymes play important roles in bacterial growth, signal transduction and pathogenicity.
Probab=63.93 E-value=2.7 Score=33.41 Aligned_cols=35 Identities=9% Similarity=0.043 Sum_probs=31.7
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
.++|+.++.+.+.|+ +|.++....+.+++++|||.
T Consensus 98 ~slR~~~G~~~~~N~---vH~sd~~~~a~~e~~~~F~~ 132 (135)
T smart00562 98 GTIRGDFGLDIGRNA---VHGSDSPESAEREIALFFPE 132 (135)
T ss_pred cchHHhhccccccee---EECCCCHHHHHHHHHHcCCc
Confidence 468888999999888 99999999999999999996
No 26
>PF00334 NDK: Nucleoside diphosphate kinase; InterPro: IPR001564 Nucleoside diphosphate kinases (2.7.4.6 from EC) (NDK) are enzymes required for the synthesis of nucleoside triphosphates (NTP) other than ATP. They provide NTPs for nucleic acid synthesis, CTP for lipid synthesis, UTP for polysaccharide synthesis and GTP for protein elongation, signal transduction and microtubule polymerisation. In eukaryotes, there seems to be a small family of NDK isozymes each of which acts in a different subcellular compartment and/or has a distinct biological function. Eukaryotic NDK isozymes are hexamers of two highly related chains (A and B) []. By random association (A6, A5B...AB5, B6), these two kinds of chain form isoenzymes differing in their isoelectric point. NDK are proteins of 17 Kd that act via a ping-pong mechanism in which a histidine residue is phosphorylated, by transfer of the terminal phosphate group from ATP. In the presence of magnesium, the phosphoenzyme can transfer its phosphate group to any NDP, to produce an NTP. NDK isozymes have been sequenced from prokaryotic and eukaryotic sources. It has also been shown [] that the Drosophila awd (abnormal wing discs) protein, is a microtubule-associated NDK. Mammalian NDK is also known as metastasis inhibition factor nm23. The sequence of NDK has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism []. Our signature pattern contains this residue.; GO: 0004550 nucleoside diphosphate kinase activity, 0005524 ATP binding, 0006165 nucleoside diphosphate phosphorylation, 0006183 GTP biosynthetic process, 0006228 UTP biosynthetic process, 0006241 CTP biosynthetic process; PDB: 1S5Z_F 1NSP_A 1BUX_B 1HHQ_A 3FKB_A 1HLW_A 1LWX_B 1HIY_B 1B99_D 1MN9_A ....
Probab=61.41 E-value=2.1 Score=33.95 Aligned_cols=37 Identities=14% Similarity=0.143 Sum_probs=29.9
Q ss_pred chhhhccCCCCcccccCCCccCCCchhhhccccccccccc
Q 026906 37 TSHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHL 76 (231)
Q Consensus 37 ~~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~~ 76 (231)
-.++|+.++.+...|+ +|.+++...+.+++.+|||+.
T Consensus 97 p~slR~~~g~~~~~N~---vH~sd~~~~a~rE~~~~F~~~ 133 (135)
T PF00334_consen 97 PGSLRARYGTDIIRNA---VHGSDSPEDAEREIAFFFPEF 133 (135)
T ss_dssp TTSHHHHH-SSSTG-S---EEE-SSHHHHHHHHHHHSTGG
T ss_pred cccchhceeecCCCCe---EECCCCHHHHHHHHHHcCCcc
Confidence 3468888999999877 999999999999999999973
No 27
>cd04414 NDPk6 Nucleoside diphosphate kinase 6 (NDP kinase 6, NDPk6, NM23-H6; NME6; Inhibitor of p53-induced apoptosis-alpha, IPIA-alpha): The nm23-H6 gene encoding NDPk6 is expressed mainly in mitochondria, but also found at a lower level in most tissues. NDPk6 has all nine residues considered crucial for enzyme structure and activity, and has been found to have NDP kinase activity. It may play a role in cell growth and cell cycle progression. The nm23-H6 gene locus has been implicated in a variety of malignant tumors.
Probab=61.34 E-value=3 Score=33.42 Aligned_cols=33 Identities=12% Similarity=0.170 Sum_probs=29.9
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLP 74 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~ 74 (231)
++|+.++.+.+.|+ +|.+|....+.+++.+|||
T Consensus 103 siR~~fg~~~~~N~---vH~Sds~e~A~~Ei~~fF~ 135 (135)
T cd04414 103 SIRGLYGLTDTRNA---THGSDSPASAQREIALFFP 135 (135)
T ss_pred CcHHHhcCccccee---EECCCCHHHHHHHHHhcCC
Confidence 67888999999877 9999999999999999997
No 28
>PRK14541 nucleoside diphosphate kinase; Provisional
Probab=61.12 E-value=3 Score=33.79 Aligned_cols=35 Identities=11% Similarity=0.103 Sum_probs=31.3
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
.++|+.++.+.+.|. +|.+|+...+.+++++||+.
T Consensus 99 ~siR~~yg~~~~~N~---vHgSds~e~A~~Ei~~fF~~ 133 (140)
T PRK14541 99 GTVRKLYADSKGENI---VHGSDSAENAAIEAGFFFSA 133 (140)
T ss_pred CCchHHhccccccee---EECCCCHHHHHHHHHHcCCh
Confidence 367888999998777 99999999999999999986
No 29
>PLN02931 nucleoside diphosphate kinase family protein
Probab=58.08 E-value=3.8 Score=34.62 Aligned_cols=36 Identities=8% Similarity=0.017 Sum_probs=32.9
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLV 77 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~~~ 77 (231)
++|+.++.+...|+ +|.+|....+.+++.+||+.+.
T Consensus 131 sIRa~fG~~~~rN~---vHgSDs~e~A~~Ei~~fF~~~~ 166 (177)
T PLN02931 131 SIRAMCGLDSEKNC---VHGSDSPESAEREISFFFGDVS 166 (177)
T ss_pred CchHHhcCcccccc---eECCCCHHHHHHHHHHhCCccc
Confidence 67888999999888 9999999999999999999865
No 30
>cd04416 NDPk_TX NDP kinase domain of thioredoxin domain-containing proteins (TXNDC3 and TXNDC6): Txl-2 (TXNDC6) and Sptrx-2 (TXNDC3) are fusion proteins of Group II N-terminal thioredoxin domains followed by one or three NDP kinase domains, respectively. Sptrx-2, which has a tissue specific distribution in human testis, has been considered as a member of the nm23 family (nm23-H8) and exhibits a high homology with sea urchin IC1 (intermediate chain-1) protein, a component of the sperm axonemal outer dynein arm complex. Txl-2 is mainly represented in close association with microtubules within tissues with cilia and flagella such as seminiferous epithelium (spermatids) and lung airway epithelium, suggesting possible role in control of microtubule stability and maintenance.
Probab=57.72 E-value=3.6 Score=32.69 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=29.7
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFL 73 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~ 73 (231)
.++|+.++.+++.|+ +|.+|...++.+++++||
T Consensus 100 ~slR~~fg~~~~~N~---vH~Sds~~~a~~Ei~~fF 132 (132)
T cd04416 100 DSLRAQFARDHLSNA---VHGSSSAEEAEKEIDFFF 132 (132)
T ss_pred CChHHHhcCccccee---EECCCCHHHHHHHHHHhC
Confidence 368889999999888 999999999999999987
No 31
>PRK14545 nucleoside diphosphate kinase; Provisional
Probab=57.63 E-value=3.8 Score=33.09 Aligned_cols=35 Identities=6% Similarity=-0.128 Sum_probs=31.6
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
.++|+.++.+...|+ +|.+|+...+.+++.+||+.
T Consensus 101 ~siR~~yg~~~~~N~---vH~Sds~e~A~~Ei~~fF~~ 135 (139)
T PRK14545 101 GTIRKKYAKSIGENA---VHGSDSDENAQIEGAFHFAG 135 (139)
T ss_pred CChhHHhccccccee---EECCCCHHHHHHHHHHhCCc
Confidence 368888999999888 99999999999999999986
No 32
>cd04418 NDPk5 Nucleoside diphosphate kinase homolog 5 (NDP kinase homolog 5, NDPk5, NM23-H5; Inhibitor of p53-induced apoptosis-beta, IPIA-beta): In human, mRNA for NDPk5 is almost exclusively found in testis, especially in the flagella of spermatids and spermatozoa, in association with axoneme microtubules, and may play a role in spermatogenesis by increasing the ability of late-stage spermatids to eliminate reactive oxygen species. It belongs to the nm23 Group II genes and appears to differ from the other human NDPks in that it lacks two important catalytic site residues, and thus does not appear to possess NDP kinase activity. NDPk5 confers protection from cell death by Bax and alters the cellular levels of several antioxidant enzymes, including glutathione peroxidase 5 (Gpx5).
Probab=53.69 E-value=5.1 Score=31.99 Aligned_cols=33 Identities=15% Similarity=0.174 Sum_probs=29.8
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLP 74 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~ 74 (231)
++|+.++.+...|+ +|.+|....+.+++.+|||
T Consensus 100 siR~~fg~~~~~N~---vH~Sds~~~a~~Ei~~fF~ 132 (132)
T cd04418 100 SLRAIYGTDDLRNA---VHGSDSFSSAEREIRFMFP 132 (132)
T ss_pred ChHHhhcCccccee---EECCCCHHHHHHHHHhcCC
Confidence 57788999999888 9999999999999999997
No 33
>PRK14540 nucleoside diphosphate kinase; Provisional
Probab=53.09 E-value=5.1 Score=32.09 Aligned_cols=34 Identities=6% Similarity=-0.059 Sum_probs=30.4
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
++|+.++.+...|+ +|.+|....+.+++++||+.
T Consensus 101 siR~~fg~~~~~N~---vH~Sds~~~a~~E~~~fF~~ 134 (134)
T PRK14540 101 TIRGDFGLYTPANI---IHASDSKESAEREIKLFFGE 134 (134)
T ss_pred cchhhhccccccee---EECCCCHHHHHHHHHHhcCC
Confidence 67888999999887 99999999999999999974
No 34
>PRK14542 nucleoside diphosphate kinase; Provisional
Probab=52.80 E-value=4.9 Score=32.42 Aligned_cols=35 Identities=14% Similarity=0.100 Sum_probs=31.4
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
.++|+.++.+...|+ +|.+|....+.+++.+||+.
T Consensus 99 ~siR~~fg~~~~~N~---vH~Sds~e~A~~Ei~~fF~~ 133 (137)
T PRK14542 99 GTIRALYAESKEANA---VHGSDSDANAALEISFFFKG 133 (137)
T ss_pred CCchHHhcCccccee---EECCCCHHHHHHHHHHcCCh
Confidence 368888999999888 99999999999999999985
No 35
>cd04413 NDPk_I Nucleoside diphosphate kinase Group I (NDPk_I)-like: NDP kinase domains are present in a large family of structurally and functionally conserved proteins from bacteria to humans that generally catalyze the transfer of gamma-phosphates of a nucleoside triphosphate (NTP) donor onto a nucleoside diphosphate (NDP) acceptor through a phosphohistidine intermediate. The mammalian nm23/NDP kinase gene family can be divided into two distinct groups. The group I genes encode proteins that generally have highly homologous counterparts in other organisms and possess the classic enzymatic activity of a kinase. This group includes vertebrate NDP kinases A-D (Nm23- H1 to -H4), and its counterparts in bacteria, archea and other eukaryotes. NDP kinases exist in two different quaternary structures; all known eukaryotic enzymes are hexamers, while some bacterial enzymes are tetramers, as in Myxococcus. They possess the NDP kinase active site motif (NXXH[G/A]SD) and the nine residues that
Probab=52.44 E-value=5.4 Score=31.66 Aligned_cols=33 Identities=9% Similarity=0.002 Sum_probs=29.7
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFL 73 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~ 73 (231)
.++|+.++.+...|+ +|.+|....+.+++++||
T Consensus 98 ~slR~~~G~~~~~Na---vH~sd~~~~a~~E~~~fF 130 (130)
T cd04413 98 GTIRGDFALSIGRNI---VHGSDSVESAEREIALWF 130 (130)
T ss_pred CCchhhhcccccccc---eECCCCHHHHHHHHHhhC
Confidence 468888999999888 999999999999999987
No 36
>PTZ00093 nucleoside diphosphate kinase, cytosolic; Provisional
Probab=52.21 E-value=4.9 Score=32.85 Aligned_cols=35 Identities=6% Similarity=-0.067 Sum_probs=31.3
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
.++|+.++.+...|. +|.+|....+.+++.+||+.
T Consensus 100 ~siR~~fg~~~~~Na---vH~Sds~e~A~~Ei~~fF~~ 134 (149)
T PTZ00093 100 GTIRGDFCVDVGRNV---IHGSDSVESAKREIALWFKP 134 (149)
T ss_pred Ccchhhhccccccce---eecCCCHHHHHHHHHHhCCh
Confidence 367888999999888 99999999999999999985
No 37
>PF04472 DUF552: Protein of unknown function (DUF552); InterPro: IPR007561 This entry represents a cell division protein, designated SepF, which is conserved in Gram-positive bacteria. SepF accumulates at the cell division site in an FtsZ-dependent manner and is required for proper septum formation []. Mutants are viable but the formation of the septum is much slower and occurs with a very abnormal morphology. This entry also includes archaeal related proteins of unknown function.; GO: 0000917 barrier septum formation; PDB: 3P04_A.
Probab=51.89 E-value=25 Score=24.92 Aligned_cols=44 Identities=11% Similarity=0.262 Sum_probs=30.3
Q ss_pred EEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHh
Q 026906 87 YIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDL 134 (231)
Q Consensus 87 l~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~ 134 (231)
+++++|..+.. +.+|.+.|++....|+++. .|+.++++++....
T Consensus 1 I~v~~p~~~~D--~~~i~~~l~~g~~Vivnl~--~l~~~~~~Ri~Dfl 44 (73)
T PF04472_consen 1 IVVFEPKSFED--AREIVDALREGKIVIVNLE--NLDDEEAQRILDFL 44 (73)
T ss_dssp -EEEE-SSGGG--HHHHHHHHHTT--EEEE-T--TS-HHHHHHHHHHH
T ss_pred CEEEeeCCHHH--HHHHHHHHHcCCEEEEECC--CCCHHHHHHHHHHH
Confidence 36889999987 8899999998877666665 67788888875443
No 38
>cd00595 NDPk Nucleoside diphosphate kinases (NDP kinases, NDPks): NDP kinases, responsible for the synthesis of nucleoside triphosphates (NTPs), are involved in numerous regulatory processes associated with proliferation, development, and differentiation. They are vital for DNA/RNA synthesis, cell division, macromolecular metabolism and growth. The enzymes generate NTPs or their deoxy derivatives by terminal (gamma) phosphotransfer from an NTP such as ATP or GTP to any nucleoside diphosphate (NDP) or its deoxy derivative. The sequence of NDPk has been highly conserved through evolution. There is a single histidine residue conserved in all known NDK isozymes, which is involved in the catalytic mechanism. The first confirmed metastasis suppressor gene was the NDP kinase protein encoded by the nm23 gene. Unicellular organisms generally possess only one gene encoding NDP kinase, while most multicellular organisms possess not only an ortholog that provides most of the NDP kinase enzymatic a
Probab=46.24 E-value=7.2 Score=30.93 Aligned_cols=33 Identities=18% Similarity=0.143 Sum_probs=29.5
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFL 73 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~ 73 (231)
.++|+.++.+.+.|+ +|.+|...++.+++.+||
T Consensus 101 ~siR~~~g~~~~~N~---vH~Sd~~~~a~~Ei~~~F 133 (133)
T cd00595 101 GSLRADFGTDVLRNA---VHGSDSVESAAREIAFFF 133 (133)
T ss_pred CChHHHhcCccccee---EECCCCHHHHHHHHHhhC
Confidence 368888999999888 999999999999999987
No 39
>cd04412 NDPk7B Nucleoside diphosphate kinase 7 domain B (NDPk7B): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=44.82 E-value=7.9 Score=30.88 Aligned_cols=32 Identities=13% Similarity=0.004 Sum_probs=28.9
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFL 73 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~ 73 (231)
++|+.++.+...|+ +|.+|....+.+++++||
T Consensus 103 siR~~yg~~~~~N~---vH~Sds~~~A~~e~~~fF 134 (134)
T cd04412 103 TLRARYGKDKVQNA---VHCTDLPEDGPLELKFFF 134 (134)
T ss_pred CeehhhcCcCccee---EEcCCCHHHHHHHHHhhC
Confidence 67888999999888 999999999999999987
No 40
>PRK14543 nucleoside diphosphate kinase; Provisional
Probab=38.71 E-value=10 Score=31.76 Aligned_cols=35 Identities=6% Similarity=0.001 Sum_probs=28.9
Q ss_pred hhhccCCCC----------cccccCCCccCCCchhhhccccccccccc
Q 026906 39 HLAAFHPQS----------HLFVKFPPCPQRKTVARNSNETGIFLPHL 76 (231)
Q Consensus 39 ~~~~~~~~~----------~l~~gs~v~~~~~~~~~~~~~~d~f~~~~ 76 (231)
++|+.++.+ .+.|+ +|.+|+.+.+.+++.+|||+.
T Consensus 109 tIR~~fg~~~~~~~~~~~~~~rN~---vH~SDs~esA~rEi~~fF~~~ 153 (169)
T PRK14543 109 TIRGDFSYHSFNYANEKGFSVYNV---IHASANEDDALREIPIWFKDN 153 (169)
T ss_pred cchhhhcccccccccccccceeeE---EECCCCHHHHHHHHHHhCCcc
Confidence 566767765 57677 999999999999999999974
No 41
>cd04415 NDPk7A Nucleoside diphosphate kinase 7 domain A (NDPk7A): The nm23-H7 class of nucleoside diphosphate kinase (NDPk7) consists of an N-terminal DM10 domain and two functional catalytic NDPk modules, NDPk7A and NDPk7B. The function of the DM10 domain, which also occurs in multiple copies in other proteins, is unknown. NDPk7 is predominantly expressed in testes, although appreciable amount are also found in liver, heart, brain, ovary, small intestine and spleen. The nm23-H7 gene is located in or near the hereditary prostrate cancer susceptibility locus. Nm23-H7 may be involved in the development of colon and gastric carcinoma, the latter possibly in a type-specific manner.
Probab=36.41 E-value=13 Score=29.61 Aligned_cols=32 Identities=16% Similarity=0.159 Sum_probs=28.6
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFL 73 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~ 73 (231)
++|+.++.+...|+ +|.+|..+.+.+++.+||
T Consensus 100 siR~~fg~~~~~N~---vH~Sds~e~a~~Ei~~fF 131 (131)
T cd04415 100 SIRALFGTDGTRNA---AHGSDSVASAARELEFFF 131 (131)
T ss_pred cchhhhccccccee---EECCCCHHHHHHHHHhhC
Confidence 67888999998887 999999999999999987
No 42
>COG1844 Uncharacterized protein conserved in archaea [Function unknown]
Probab=30.66 E-value=1.4e+02 Score=23.78 Aligned_cols=79 Identities=16% Similarity=0.282 Sum_probs=46.5
Q ss_pred EEEEEcCcccccCchHHHHHHHHH-cCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEcc--chh
Q 026906 86 TYIMVKPDGVQRGLVGDIISRFEK-KGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG--AGV 162 (231)
Q Consensus 86 Tl~LIKPdav~~~~~G~II~~I~~-~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g--~na 162 (231)
|++||+-|.+.+ +-..|..|+. .|++|.+.- --+.++.|.+...+.-|+. -+...-..+..+.+ ..|
T Consensus 2 t~vliR~Ds~~K--il~ALaDleRyagiki~gkP-rii~p~~aD~~~~~ilGe~-------R~k~~~aa~a~v~~~a~~a 71 (125)
T COG1844 2 TIVLIRADSYDK--ILTALADLERYAGIKIRGKP-RIIPPELADEILSSILGEV-------RKKCKVAAVAEVEEPASKA 71 (125)
T ss_pred eEEEEecCcHHH--HHHHHHHHHHhcCceeecCC-cccChhhHHHHHHHHHHHH-------hcccchhheeeecCccHHH
Confidence 799999998765 5556666644 678877653 3456777777755443321 11111122233443 458
Q ss_pred HHHHHHHhCCCC
Q 026906 163 VASARKLIGSTD 174 (231)
Q Consensus 163 V~~~r~liGp~d 174 (231)
|.+.|++=-|..
T Consensus 72 I~rIr~IHPPAH 83 (125)
T COG1844 72 IGRIRKIHPPAH 83 (125)
T ss_pred HHHHHhcCCCce
Confidence 888888765543
No 43
>PF14454 Prok_Ub: Prokaryotic Ubiquitin
Probab=30.11 E-value=44 Score=23.73 Aligned_cols=28 Identities=21% Similarity=0.420 Sum_probs=23.4
Q ss_pred ecCHHHHHHHHHHhcCCCChHHHHHHhccCceE
Q 026906 121 QCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVV 153 (231)
Q Consensus 121 ~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvv 153 (231)
.|+.++++.||... |++|...-..||.+
T Consensus 23 ~~spe~V~~~ya~~-----YPeL~tA~v~gP~v 50 (65)
T PF14454_consen 23 SLSPEEVRDFYAAQ-----YPELTTAEVEGPEV 50 (65)
T ss_pred CCCHHHHHHHHhhh-----ChhhheeeecCCeE
Confidence 57899999999775 89988887788865
No 44
>KOG0888 consensus Nucleoside diphosphate kinase [Nucleotide transport and metabolism]
Probab=27.98 E-value=26 Score=29.10 Aligned_cols=35 Identities=9% Similarity=0.081 Sum_probs=29.8
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhccccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHL 76 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~~ 76 (231)
++|+.++.+++.++ ||++|+...+.+++..+|+.+
T Consensus 107 sir~~f~~~~~rn~---~HgSDs~~sA~rEi~~~F~~~ 141 (156)
T KOG0888|consen 107 SIRGDFGVDDGRNS---IHGSDSVESAEREIKLWFPEF 141 (156)
T ss_pred CeeeeecccCCCCc---cccCCcHHHHHHHHHhcCchh
Confidence 45567888888766 999999999999999999974
No 45
>PLN02619 nucleoside-diphosphate kinase
Probab=27.57 E-value=20 Score=31.76 Aligned_cols=34 Identities=3% Similarity=-0.134 Sum_probs=30.4
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
++|+.++.+...|. +|.+|..+.+.+++.+||+.
T Consensus 187 TIRg~fG~~~~rNa---VHgSDS~EsA~rEI~~fF~~ 220 (238)
T PLN02619 187 TIRGDLAVVVGRNI---IHGSDGPETAKDEINLWFKP 220 (238)
T ss_pred cchhhhccccccee---eecCCCHHHHHHHHHHhCCH
Confidence 57788999988777 99999999999999999985
No 46
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=27.19 E-value=1.6e+02 Score=21.75 Aligned_cols=47 Identities=17% Similarity=0.166 Sum_probs=38.3
Q ss_pred eEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHh
Q 026906 84 EETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDL 134 (231)
Q Consensus 84 E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~ 134 (231)
-..+++.-|+..+ .+++....+.|..|.--|-+.++.++++++.+..
T Consensus 63 ~D~V~I~tp~~~h----~~~~~~~l~~g~~v~~EKP~~~~~~~~~~l~~~a 109 (120)
T PF01408_consen 63 VDAVIIATPPSSH----AEIAKKALEAGKHVLVEKPLALTLEEAEELVEAA 109 (120)
T ss_dssp ESEEEEESSGGGH----HHHHHHHHHTTSEEEEESSSSSSHHHHHHHHHHH
T ss_pred CCEEEEecCCcch----HHHHHHHHHcCCEEEEEcCCcCCHHHHHHHHHHH
Confidence 3566777777543 4888888899999999999999999999997643
No 47
>TIGR03738 PRTRC_C PRTRC system protein C. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. It is often found on plasmids. This protein family is designated PRTRC system protein C.
Probab=26.81 E-value=34 Score=24.39 Aligned_cols=28 Identities=25% Similarity=0.558 Sum_probs=23.0
Q ss_pred ecCHHHHHHHHHHhcCCCChHHHHHHhccCceE
Q 026906 121 QCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVV 153 (231)
Q Consensus 121 ~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvv 153 (231)
.|+.++++.||... |++|...--+||.+
T Consensus 22 ~~spe~V~dfYs~~-----YPeLttA~v~gP~~ 49 (66)
T TIGR03738 22 AMSPEQVRDFYSAQ-----YPELLNAEVEGPVV 49 (66)
T ss_pred CCCHHHHHHHHhcc-----CchheeeeeeCCeE
Confidence 57899999999764 88888777788865
No 48
>cd06335 PBP1_ABC_ligand_binding_like_2 Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Probab=25.57 E-value=3.5e+02 Score=23.99 Aligned_cols=74 Identities=12% Similarity=0.209 Sum_probs=46.2
Q ss_pred EEEEEEcCcc-cccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCc-eEEEEEccchh
Q 026906 85 ETYIMVKPDG-VQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGP-VVCMAWEGAGV 162 (231)
Q Consensus 85 ~Tl~LIKPda-v~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGp-vvaL~L~g~na 162 (231)
+.+++|-++. ..+.....+.+.+++.|++++....+..+.. +|-+.+.+.+.+|| +|.+...+.++
T Consensus 139 ~~v~ii~~~~~~g~~~~~~~~~~~~~~G~~v~~~~~~~~~~~------------d~s~~i~~i~~~~~d~v~~~~~~~~~ 206 (347)
T cd06335 139 KKVALLLDNTGWGRSNRKDLTAALAARGLKPVAVEWFNWGDK------------DMTAQLLRAKAAGADAIIIVGNGPEG 206 (347)
T ss_pred CeEEEEeccCchhhhHHHHHHHHHHHcCCeeEEEeeecCCCc------------cHHHHHHHHHhCCCCEEEEEecChHH
Confidence 5667776664 4444556777888999999998776654422 22222334455677 55555566777
Q ss_pred HHHHHHHh
Q 026906 163 VASARKLI 170 (231)
Q Consensus 163 V~~~r~li 170 (231)
+.-++++-
T Consensus 207 ~~~~~~~~ 214 (347)
T cd06335 207 AQIANGMA 214 (347)
T ss_pred HHHHHHHH
Confidence 77666554
No 49
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=24.38 E-value=2.2e+02 Score=22.49 Aligned_cols=43 Identities=28% Similarity=0.529 Sum_probs=27.4
Q ss_pred EEEEEcCcccccCchHHHHH-HHHHcCCeEEeEEEeecCHHHHHHH
Q 026906 86 TYIMVKPDGVQRGLVGDIIS-RFEKKGFKLTGLKLFQCPKDLAEEH 130 (231)
Q Consensus 86 Tl~LIKPdav~~~~~G~II~-~I~~~Gf~I~~~kmv~Ls~e~A~e~ 130 (231)
-++-+++|.-..| -.++. .|+.+||+++..-..+-.++-++..
T Consensus 6 ~~a~~g~D~Hd~g--~~iv~~~l~~~GfeVi~lg~~~s~e~~v~aa 49 (132)
T TIGR00640 6 LVAKMGQDGHDRG--AKVIATAYADLGFDVDVGPLFQTPEEIARQA 49 (132)
T ss_pred EEEeeCCCccHHH--HHHHHHHHHhCCcEEEECCCCCCHHHHHHHH
Confidence 4556677765443 24554 4699999999998775444444444
No 50
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. This CD includes the C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB. AcuB is putatively involved in the anaerobic catabolism of acetoin, and related proteins. Studies report the induction of AcuB by nitrate respiration and also by fermentation. Since acetoin can be secreted and later serve as a source of carbon, it has been proposed that, during anaerobic growth when other carbon sources are exhausted, the induction of the AcuB protein results in acetoin catabolism. AcuB-like proteins have two N-terminal tandem CBS domains and a single C-terminal ACT domain. Members of this CD belong to the superfamily of ACT regulatory domains.
Probab=22.29 E-value=1.5e+02 Score=19.83 Aligned_cols=30 Identities=10% Similarity=0.314 Sum_probs=22.2
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEE
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLT 115 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~ 115 (231)
.+.+.++|.-+. .. ..++++.|+++||+|.
T Consensus 40 ~~~~~v~i~v~~-~~--~~~~~~~L~~~G~~v~ 69 (72)
T cd04883 40 EDNKILVFRVQT-MN--PRPIIEDLRRAGYEVL 69 (72)
T ss_pred CCeEEEEEEEec-CC--HHHHHHHHHHCCCeee
Confidence 456667777665 22 4599999999999986
No 51
>cd06355 PBP1_FmdD_like Periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF). This group includes the periplasmic component (FmdD) of an active transport system for short-chain amides and urea (FmdDEF), found in Methylophilus methylotrophus, and its homologs from other bacteria. FmdD, a type I periplasmic binding protein, is induced by short-chain amides and urea and repressed by excess ammonia, while FmdE and FmdF are hydrophobic transmembrane proteins. FmdDEF is predicted to be an ATP-dependent transporter and closely resembles the periplasmic binding protein and the two transmembrane proteins present in various hydrophobic amino acid-binding transport systems.
Probab=22.11 E-value=4.9e+02 Score=23.18 Aligned_cols=41 Identities=15% Similarity=0.168 Sum_probs=27.5
Q ss_pred eEEEEEEcCcc-cccCchHHHHHHHHHcCCeEEeEEEeecCH
Q 026906 84 EETYIMVKPDG-VQRGLVGDIISRFEKKGFKLTGLKLFQCPK 124 (231)
Q Consensus 84 E~Tl~LIKPda-v~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~ 124 (231)
-+++++|-+|. +-......+-+.+++.|++|+....+....
T Consensus 133 ~k~vaii~~d~~~g~~~~~~~~~~~~~~G~~vv~~~~~~~~~ 174 (348)
T cd06355 133 GKRFYLVGSDYVYPRTANKILKAQLESLGGEVVGEEYLPLGH 174 (348)
T ss_pred CCeEEEECCcchHHHHHHHHHHHHHHHcCCeEEeeEEecCCh
Confidence 36789998884 333333445567899999999876555443
No 52
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=20.07 E-value=86 Score=24.35 Aligned_cols=17 Identities=41% Similarity=0.896 Sum_probs=15.6
Q ss_pred CHHHHHHHHHHhcCCCC
Q 026906 123 PKDLAEEHYKDLNSKPF 139 (231)
Q Consensus 123 s~e~A~e~y~~~~~~~~ 139 (231)
+.+.|.+||..+.|++|
T Consensus 63 ~~~~Ad~Fy~~fNGk~F 79 (110)
T PF07576_consen 63 DQESADEFYEEFNGKPF 79 (110)
T ss_pred CHHHHHHHHHHhCCCcc
Confidence 67889999999999988
Done!