Query 026906
Match_columns 231
No_of_seqs 189 out of 1148
Neff 6.3
Searched_HMMs 29240
Date Tue Mar 26 01:11:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026906.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026906hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3q8u_A Nucleoside diphosphate 100.0 5.6E-53 1.9E-57 346.8 14.9 149 83-231 1-149 (157)
2 4fkx_A NDK B, nucleoside dipho 100.0 7.9E-53 2.7E-57 346.9 13.7 150 82-231 10-159 (161)
3 3l7u_A Nucleoside diphosphate 100.0 1.7E-52 5.7E-57 348.2 14.3 151 81-231 22-172 (172)
4 1w7w_A Nucleoside diphosphate 100.0 2.1E-52 7.3E-57 350.6 13.5 168 64-231 13-180 (182)
5 3r9l_A Nucleoside diphosphate 100.0 9.4E-53 3.2E-57 344.9 11.0 149 83-231 7-155 (155)
6 1s57_A Nucleoside diphosphate 100.0 5.8E-52 2E-56 339.8 15.4 151 81-231 3-153 (153)
7 3fkb_A NDP kinase, NDK, nucleo 100.0 4.4E-52 1.5E-56 341.0 14.1 149 82-231 7-155 (155)
8 3mpd_A Nucleoside diphosphate 100.0 7.6E-52 2.6E-56 338.3 14.8 147 82-230 4-151 (151)
9 1nb2_A Nucleoside diphosphate 100.0 5E-52 1.7E-56 339.2 13.0 149 83-231 2-150 (150)
10 1xiq_A Nucleoside diphosphate 100.0 1.2E-51 4.1E-56 339.0 14.8 151 81-231 7-157 (157)
11 2vu5_A Nucleoside diphosphate 100.0 1.3E-51 4.5E-56 336.1 14.4 148 83-230 1-148 (148)
12 3bbb_A Nucleoside diphosphate 100.0 1.5E-51 5.1E-56 336.8 13.9 149 83-231 3-151 (151)
13 1zs6_A Nucleoside diphosphate 100.0 1.6E-51 5.3E-56 342.0 13.4 164 68-231 5-169 (169)
14 1pku_A Nucleoside diphosphate 100.0 2.3E-51 7.9E-56 335.3 13.7 148 83-231 2-149 (150)
15 1u8w_A Nucleoside diphosphate 100.0 4.5E-51 1.5E-55 333.3 15.1 148 83-231 1-148 (149)
16 4hr2_A Nucleoside diphosphate 100.0 4.1E-51 1.4E-55 331.8 14.7 139 82-220 6-144 (145)
17 3b54_A NDK, NDP kinase, nucleo 100.0 1.5E-51 5.3E-56 339.6 12.3 152 80-231 10-161 (161)
18 3js9_A Nucleoside diphosphate 100.0 3.5E-51 1.2E-55 335.8 13.4 150 81-230 7-156 (156)
19 2dxe_A Nucleoside diphosphate 100.0 4.2E-51 1.5E-55 336.9 13.5 149 82-231 6-157 (160)
20 2az3_A Nucleoside diphosphate 100.0 1.2E-50 4.2E-55 335.2 14.6 150 82-231 7-158 (164)
21 2hur_A NDK, nucleoside diphosp 100.0 3.8E-50 1.3E-54 325.5 15.3 141 83-223 2-142 (142)
22 1nhk_R Nucleoside diphosphate 100.0 4E-50 1.4E-54 326.0 14.0 141 83-223 2-142 (144)
23 3evo_A NDP kinase, NDK, nucleo 100.0 1E-49 3.6E-54 324.0 14.8 139 81-219 4-143 (146)
24 4dz6_A Nucleoside diphosphate 100.0 2.7E-50 9.4E-55 339.6 11.3 150 81-230 24-188 (190)
25 1wkj_A Nucleoside diphosphate 100.0 4E-49 1.4E-53 317.7 14.5 136 83-218 1-136 (137)
26 3ztp_A Nucleoside diphosphate 100.0 1.3E-49 4.3E-54 322.4 11.5 137 83-219 3-142 (142)
27 1ehw_A NDPK H4, nucleoside dip 100.0 4.5E-49 1.6E-53 325.1 14.0 139 83-221 24-162 (162)
28 1k44_A Nucleoside diphosphate 100.0 2.1E-48 7.3E-53 313.1 15.0 133 83-215 2-135 (136)
29 1xqi_A Nucleoside diphosphate 100.0 4.1E-45 1.4E-49 309.6 9.6 149 69-220 4-195 (195)
30 3bh7_B Protein XRP2; protein-p 100.0 1.7E-31 6E-36 243.8 9.5 114 81-216 233-346 (352)
31 2z14_A EF-hand domain-containi 97.0 6.9E-05 2.4E-09 59.3 -1.1 47 30-78 64-116 (133)
32 3js9_A Nucleoside diphosphate 61.2 1.6 5.4E-05 35.0 -0.2 35 38-75 107-141 (156)
33 4hr2_A Nucleoside diphosphate 60.9 1.5 5.1E-05 34.8 -0.4 35 39-76 106-140 (145)
34 3p04_A Uncharacterized BCR; SE 60.1 9.2 0.00031 27.6 3.8 45 85-133 5-49 (87)
35 3ztp_A Nucleoside diphosphate 56.2 2.1 7E-05 33.7 -0.3 34 39-75 105-138 (142)
36 1u8w_A Nucleoside diphosphate 56.0 2.1 7.2E-05 33.9 -0.3 35 38-75 99-133 (149)
37 1s57_A Nucleoside diphosphate 52.3 2.5 8.5E-05 33.6 -0.5 35 38-75 103-137 (153)
38 3evo_A NDP kinase, NDK, nucleo 51.8 2.6 8.9E-05 33.3 -0.4 35 39-76 106-140 (146)
39 1k44_A Nucleoside diphosphate 51.7 2.8 9.5E-05 32.6 -0.3 34 39-75 102-135 (136)
40 1xiq_A Nucleoside diphosphate 51.5 2.6 9E-05 33.7 -0.4 35 38-75 107-141 (157)
41 3b54_A NDK, NDP kinase, nucleo 51.2 2.7 9.1E-05 33.8 -0.4 35 38-75 111-145 (161)
42 1zs6_A Nucleoside diphosphate 50.4 3.1 0.00011 33.7 -0.2 35 38-75 119-153 (169)
43 1wkj_A Nucleoside diphosphate 49.6 3.2 0.00011 32.3 -0.2 35 38-75 99-133 (137)
44 3r9l_A Nucleoside diphosphate 46.5 3.7 0.00013 32.8 -0.3 34 39-75 106-139 (155)
45 1nb2_A Nucleoside diphosphate 46.3 4.5 0.00015 32.0 0.2 35 38-75 100-134 (150)
46 2hur_A NDK, nucleoside diphosp 45.4 3.8 0.00013 32.1 -0.4 35 38-75 100-134 (142)
47 3fkb_A NDP kinase, NDK, nucleo 45.3 3.7 0.00013 32.7 -0.4 34 39-75 107-140 (155)
48 2az3_A Nucleoside diphosphate 45.2 3.8 0.00013 33.0 -0.4 35 38-75 106-142 (164)
49 1nhk_R Nucleoside diphosphate 44.4 4.2 0.00014 32.0 -0.3 35 38-75 100-134 (144)
50 2vu5_A Nucleoside diphosphate 44.2 4.3 0.00015 32.0 -0.2 34 39-75 100-133 (148)
51 3l7u_A Nucleoside diphosphate 44.0 4.6 0.00016 32.8 -0.1 34 39-75 123-156 (172)
52 4fkx_A NDK B, nucleoside dipho 43.4 4.2 0.00014 32.7 -0.4 34 39-75 110-143 (161)
53 3q8u_A Nucleoside diphosphate 42.9 4.3 0.00015 32.4 -0.4 35 39-76 100-134 (157)
54 3mpd_A Nucleoside diphosphate 40.8 5 0.00017 31.8 -0.4 34 38-74 103-136 (151)
55 3bbb_A Nucleoside diphosphate 40.7 4.9 0.00017 31.8 -0.4 35 38-75 101-135 (151)
56 1pku_A Nucleoside diphosphate 40.3 4.8 0.00017 31.8 -0.5 34 39-75 101-134 (150)
57 1ehw_A NDPK H4, nucleoside dip 35.6 7.1 0.00024 31.3 -0.3 34 39-75 123-156 (162)
58 2dxe_A Nucleoside diphosphate 34.6 7.5 0.00026 31.1 -0.3 34 39-75 106-142 (160)
59 4dz6_A Nucleoside diphosphate 34.1 7.7 0.00026 32.0 -0.3 34 39-75 130-173 (190)
60 1w7w_A Nucleoside diphosphate 31.8 9 0.00031 31.3 -0.2 35 38-75 130-164 (182)
61 4h3v_A Oxidoreductase domain p 22.8 2.4E+02 0.0084 23.8 7.5 43 85-131 77-119 (390)
No 1
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=100.00 E-value=5.6e-53 Score=346.81 Aligned_cols=149 Identities=52% Similarity=0.952 Sum_probs=147.0
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
+|+||+|||||++++|++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+||||++|+|+|+||
T Consensus 1 mErTl~iIKPDav~~~~~G~Ii~~ie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 80 (157)
T 3q8u_A 1 MERTFLMIKPDAVQRNLIGEVISRIERKGLKLVGGKLMQVPMELAETHYGEHQGKPFYNDLISFITSAPVFAMVVEGEDA 80 (157)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CceEEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHCCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
|+.||+++||+||.+|.|+|||++||.+..+|+||||||+++|+|||++||++.++++|.+..++|++|
T Consensus 81 V~~~R~l~GpTdp~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 149 (157)
T 3q8u_A 81 VNVSRHIIGSTNPSEASPGSIRGDLGLTVGRNIIHGSDSLESAEREINLWFNENEITSYASPRDAWLYE 149 (157)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGCCCCCCTTHHHHCC
T ss_pred HHHHHHHcCCCChhhcCCCChHHHhCCCCCCeeEEeCCCHHHHHHHHHHcCChHhhcccccchHHHHHH
Confidence 999999999999999999999999999999999999999999999999999999999999999999986
No 2
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=100.00 E-value=7.9e-53 Score=346.92 Aligned_cols=150 Identities=57% Similarity=1.001 Sum_probs=147.6
Q ss_pred cceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccch
Q 026906 82 QVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAG 161 (231)
Q Consensus 82 ~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~n 161 (231)
..|+||+|||||++++|++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+||||++|+|+|+|
T Consensus 10 ~~~rTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~n 89 (161)
T 4fkx_A 10 PSERTFIAVKPDGVQRNLVGEIIKRFENKGYKLVGLKLLQPTEEQAKQHYIDLASKPFYSGLVSYFSSGPIVGMVWEGLG 89 (161)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred CcccEEEEECHHHhccCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCccHHHHHHHHhCCCcEEEEEeccC
Confidence 36899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 162 VVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 162 aV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
||+.||+++||+||.+|.|+|||++||.+..+|+||||||+++|+|||++||++.++.+|....++|++|
T Consensus 90 aV~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~ye 159 (161)
T 4fkx_A 90 VVKGGRVLLGATNPADSLPGTIRGDFAVDVGRNVCHGSDSVESAKREIAFWFKAEELVSWTSHSVKQIYE 159 (161)
T ss_dssp HHHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCS
T ss_pred hHHHHHHHhcCCChhhcCCCChhHhhCCCccceeEEeCCCHHHHHHHHHHcCChhhcccccccchhheec
Confidence 9999999999999999999999999999999999999999999999999999999999999999999986
No 3
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.7e-52 Score=348.15 Aligned_cols=151 Identities=54% Similarity=1.059 Sum_probs=148.6
Q ss_pred ccceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccc
Q 026906 81 EQVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGA 160 (231)
Q Consensus 81 ~~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~ 160 (231)
.+.|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+||||+||+|+|+
T Consensus 22 ~~~ErTl~iIKPDav~r~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~ 101 (172)
T 3l7u_A 22 ANCERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVGLKFMQASEDLLKEHYVDLKDRPFFAGLVKYMHSGPVVAMVWEGL 101 (172)
T ss_dssp GGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHSSCEEEEEEEST
T ss_pred chhceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEEeCCHHHHHHHHHHhcCCchHHHHHHHHhcCCeEEEEEeCC
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 161 GVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 161 naV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
|||+.||+++||+||.+|.|+|||++||.+..+|+|||||++++|+|||++||++.++.+|.+..++|++|
T Consensus 102 naV~~~R~l~GpTdp~~A~PgTIR~~fg~~~~~N~VHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~ye 172 (172)
T 3l7u_A 102 NVVKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVESAEKEIGLWFHPEELVDYTSCAQNWIYE 172 (172)
T ss_dssp THHHHHHHHHCCSSTTTCCTTSHHHHHCCCGGGCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCC
T ss_pred CHHHHHHHHcCCCChhhcCCCChhHHhcCCCCCcEEEeCCCHHHHHHHHHHcCChhhccccccchhhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
No 4
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=100.00 E-value=2.1e-52 Score=350.62 Aligned_cols=168 Identities=49% Similarity=0.958 Sum_probs=148.5
Q ss_pred hhcccccccccccccccccceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHH
Q 026906 64 RNSNETGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKL 143 (231)
Q Consensus 64 ~~~~~~d~f~~~~~~~~~~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~L 143 (231)
+..+++++||+.........|+||+|||||++++|++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|
T Consensus 13 ~~~~~~~~~f~~~~~~~~~~erTl~iIKPDav~r~liGeIi~rie~~Gf~Iv~~K~~~ls~e~A~~fY~~h~~kpff~~L 92 (182)
T 1w7w_A 13 DYPTTENLYFQGAMDPEAELERTFIAIKPDGVQRGLISEIISRFERKGFKLVGIKVLIPTKQFAQQHYHDLKERPFFNGL 92 (182)
T ss_dssp -----------------CTTCEEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHH
T ss_pred ccchhhhhhcCCCccccchhceEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHH
Confidence 34667899998863224567999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhccCceEEEEEccchhHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccc
Q 026906 144 IEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTP 223 (231)
Q Consensus 144 v~~mtSGpvvaL~L~g~naV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~ 223 (231)
+++|+||||++|+|+|+|||+.||+++||+||..|.|+|||++||.+..+|+||||||+++|+|||++||++.++.+|.+
T Consensus 93 v~~mtSGPvvamvleG~naV~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~ 172 (182)
T 1w7w_A 93 CDFLSSGPVIAMVWEGEGVITYGRKLIGATDPQKSAPGTIRGDLAVVVGRNIIHGSDGPETAKDEIKLWFKPEELVSFTS 172 (182)
T ss_dssp HHHHTSSCEEEEEEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHCCGGGCCCCCC
T ss_pred HHHHcCCCEEEEEEecccHHHHHHHHhCCCCCCCCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhCCchhcccccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccC
Q 026906 224 AQAQWLRE 231 (231)
Q Consensus 224 ~~~~~~~~ 231 (231)
..++|++|
T Consensus 173 ~~~~~~~~ 180 (182)
T 1w7w_A 173 NSEKWIYG 180 (182)
T ss_dssp TTHHHHTC
T ss_pred ccccceec
Confidence 99999986
No 5
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=100.00 E-value=9.4e-53 Score=344.94 Aligned_cols=149 Identities=51% Similarity=0.991 Sum_probs=108.9
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
.|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+||||++|+|+|+||
T Consensus 7 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~na 86 (155)
T 3r9l_A 7 RERTFLMVKPDGVQRGLVGEIISRFERRGFKLVAMKFFVPSKNLVEEHYKEHAARPFFAGLCKFLSSGPVCAMVWEGANV 86 (155)
T ss_dssp SCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEECC---------------------------CCSCCEEEEEESTTH
T ss_pred hheEEEEEChHHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHhcCCCEEEEEEeCCCH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
|+.||+++||+||..|.|+|||++||.+..+|+||||||+++|+|||++||++.++++|.+..++|++|
T Consensus 87 V~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 155 (155)
T 3r9l_A 87 VSISRTMMGVTKPAESAPGTIRGDFGIDVGRNIIHGSANLDDAAREIALWFKPEEVASWSCSLESHIYE 155 (155)
T ss_dssp HHHHHHHHCCSCTTTCCTTSHHHHHCCSSTTCCEEECSSHHHHHHHHHHHCCSTTCC------------
T ss_pred HHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChHhccccccchhhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999986
No 6
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=100.00 E-value=5.8e-52 Score=339.85 Aligned_cols=151 Identities=88% Similarity=1.473 Sum_probs=148.2
Q ss_pred ccceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccc
Q 026906 81 EQVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGA 160 (231)
Q Consensus 81 ~~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~ 160 (231)
...|+||+|||||++++|++|+||++|+++||+|+++||++|++++|++||.+|++++||++|+++|+|||+++|+|+|+
T Consensus 3 ~~~erTl~iIKPDav~~~l~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 82 (153)
T 1s57_A 3 EDVEETYIMVKPDGIQRGLVGEIISRFEKKGFKLIGLKMFQCPKELAEEHYKDLSAKSFFPNLIEYITSGPVVCMAWEGV 82 (153)
T ss_dssp CCCEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSSSHHHHHHHHTSSCEEEEEEEET
T ss_pred cccceEEEEEChhHhhcccHHHHHHHHHHcCCEehhhhhCCCCHHHHHHHHHHhcCCCcchhHHHHhcCCCEEEEEEecc
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 161 GVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 161 naV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
|||+.||+++||+||..|.|+|||+.||.+..+|+||||||+++|+|||++||++.++.+|.+..++|++|
T Consensus 83 ~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 153 (153)
T 1s57_A 83 GVVASARKLIGKTDPLQAEPGTIRGDLAVQTGRNIVHGSDSPENGKREIGLWFKEGELCKWDSALATWLRE 153 (153)
T ss_dssp THHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHSCTTCCCCCCCTTHHHHCC
T ss_pred cHHHHHHHHhCCCCccccCCcchHHHhcCCCcCceEEcCCCHHHHHHHHHHhCCchhcccccccchhhhhC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999987
No 7
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=100.00 E-value=4.4e-52 Score=340.98 Aligned_cols=149 Identities=56% Similarity=0.935 Sum_probs=145.9
Q ss_pred cceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccch
Q 026906 82 QVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAG 161 (231)
Q Consensus 82 ~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~n 161 (231)
..|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+||||++|+|+|+|
T Consensus 7 ~~ErTl~iIKPDav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~n 86 (155)
T 3fkb_A 7 NKERTFLAVKPDGVARGLVGEIIARYEKKGFVLVGLKQLVPTKDLAESHYAEHKERPFFGGLVSFITSGPVVAMVFEGKG 86 (155)
T ss_dssp TTCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred ccceEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 162 VVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 162 aV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
||+.||+++||+||..|.|+|||++||.+..+|+||||||+++|+|||++||++.++.+|.++. +|++|
T Consensus 87 aV~~~R~l~G~t~p~~a~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~-~~~~~ 155 (155)
T 3fkb_A 87 VVASARLMIGVTNPLASAPGSIRGDFGVDVGRNIIGGSDSVESANREIALWFKPEELLTEVKPN-PNLYE 155 (155)
T ss_dssp HHHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCSCCCCC-TTSCC
T ss_pred HHHHHHHhcCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhcccccccc-hhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999987 59987
No 8
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=100.00 E-value=7.6e-52 Score=338.32 Aligned_cols=147 Identities=43% Similarity=0.795 Sum_probs=143.5
Q ss_pred cceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccch
Q 026906 82 QVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAG 161 (231)
Q Consensus 82 ~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~n 161 (231)
.+|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+||||++|+|+|+|
T Consensus 4 ~~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~n 83 (151)
T 3mpd_A 4 SMERTFIMIKPDAIKRRLISRIIQRFEEKGLYLAASKCVIPKREVLETHYSHLSSMPFFSEMVEDMMSGMVLAMVWVGKD 83 (151)
T ss_dssp -CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred ceEEEEEEEChhHhhcCcHHHHHHHHHHCCCEEEEEEEEcCCHHHHHHHHHHHcCCccHHHHHHHhcCCCEEEEEEeCCc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccC-CCcccccccccccccc
Q 026906 162 VVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFK-EGELCQWTPAQAQWLR 230 (231)
Q Consensus 162 aV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp-~~~~~~~~~~~~~~~~ 230 (231)
||+.||+++||+||.+|.|+|||++||.+..+|+||||||+++|+|||++||+ +.++.+| ..++|++
T Consensus 84 aV~~~R~l~G~t~p~~a~PgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~~e~~~~--~~~~~~~ 151 (151)
T 3mpd_A 84 AVSIGRKLIGETNPQAASVGTIRGDYGVSTGKNIIHGSDCVENAEKEIKLWIGDDVQPVSF--FDKEWIY 151 (151)
T ss_dssp HHHHHHHHHCCSSTTTSCTTSHHHHHCCSSTTCSEEECSSHHHHHHHHHHHTCSCCCCCCC--TTHHHHC
T ss_pred HHHHHHHHhCCCChhhcCCCChhHHhCCCccceeEEeCCCHHHHHHHHHHhCCCcchheee--ccccccC
Confidence 99999999999999999999999999999999999999999999999999999 8999999 8889985
No 9
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=100.00 E-value=5e-52 Score=339.20 Aligned_cols=149 Identities=51% Similarity=0.858 Sum_probs=147.0
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
+|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~na 81 (150)
T 1nb2_A 2 KERTFLMVKPDGVQRNLVGEVVKRFESKGLKLAGAKLMVISKDGAAAHYAELGGGPFFGGLVGGATSGPVFAMVWEGLNA 81 (150)
T ss_dssp CCCEEEEECHHHHHTTCHHHHHHHHHTTTCEEEEEECCCCTTHHHHHHTCTTSSSTTHHHHHHHHTSSCCBEEEEESTTH
T ss_pred ceEEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEecCCH
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
|+.||+++||+||..|.|+|||++||.+..+|+||||||+++|++||++||++.++.+|.+..++|++|
T Consensus 82 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 150 (150)
T 1nb2_A 82 AATARQILGATNPSDAAPGTIRGDFGVSAGRNAIHGSDSAGSAAKEIGAFFGGGEAASGTPAAAADIYG 150 (150)
T ss_dssp HHHHHHHHCCSSTTSSCTTSHHHHSCSCSSSCSEEECSSHHHHHHHHHHHSCSSSSCCCCCTTGGGTCC
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhcCCccceeEEeCCCHHHHHHHHHHhCCccccccccccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999986
No 10
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=100.00 E-value=1.2e-51 Score=339.04 Aligned_cols=151 Identities=50% Similarity=1.010 Sum_probs=147.4
Q ss_pred ccceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccc
Q 026906 81 EQVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGA 160 (231)
Q Consensus 81 ~~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~ 160 (231)
..+|+||+|||||++++|++|+||++|+++||+|+++||++|++++|++||.+|++++||++|+++|+|||+++|+|+|+
T Consensus 7 ~~~~~Tl~iIKPDav~r~lvGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~ 86 (157)
T 1xiq_A 7 HHMEKSFIMIKPDGVQRGLVGTIIKRFEKKGYKLIAIKMLNPTEEILKEHYKELSDQPFFKNLVAYISKGPVVAMVWEGV 86 (157)
T ss_dssp --CCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGSSSSSCTTHHHHHTTSCEEEEEEEST
T ss_pred chhheEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHHcCCCEEEEEEecc
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 161 GVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 161 naV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
|||+.||+++||+||..|.|+|||+.||.+..+|+||||||+++|+|||++||++.++.+|.+..++|++|
T Consensus 87 naV~~~R~l~G~T~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 157 (157)
T 1xiq_A 87 DMVKQGRKLIGETNPLTSNTGTIRGDFCLEVSKNVIHGSDSVASANKEINIWFKAEELTQWKHHMKEWICS 157 (157)
T ss_dssp THHHHHHHHHCCSSTTTSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHCCGGGSCCCCCGGGGGTCC
T ss_pred cchHHHHHHcCCCCCCcCCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHhCCccccccccccchhhhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999986
No 11
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=100.00 E-value=1.3e-51 Score=336.12 Aligned_cols=148 Identities=51% Similarity=1.010 Sum_probs=145.7
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
+|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+|||+++|+|+|+||
T Consensus 1 ~ErTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (148)
T 2vu5_A 1 MEKTFLMVKPDGVQRAFIGEIVARFEKKGFQLVGAKLMQVTPEIAGQHYAEHEEKPFFGELVDFITSGPVFAMVWQGEGV 80 (148)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHTGGGTTTCTHHHHHHHHHTTCCEEEEEEESTTH
T ss_pred CeEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccCh
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCcccccccccccccc
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLR 230 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~ 230 (231)
|+.||+++||+||..|.|+|||++||.+..+|+||||||+++|++||++||++.++.+|.+..++|++
T Consensus 81 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~ 148 (148)
T 2vu5_A 81 VDTARNMMGKTRPHEAAPGTIRGDFGVTVAKNIIHGSDSLESAEREIGIFFKEEELVDYSKLMNEWIY 148 (148)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHCCGGGSCCCCCGGGGGTC
T ss_pred HHHHHHHhCCCCccccCCCChHHHhcCCcccceEEeCCCHHHHHHHHHHhCCchhccccccccccccC
Confidence 99999999999999999999999999999999999999999999999999999999999999999985
No 12
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=100.00 E-value=1.5e-51 Score=336.76 Aligned_cols=149 Identities=50% Similarity=1.031 Sum_probs=147.0
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
.|+||+|||||+++++++|+||++|+++||+|+++||+++++++|++||.+|++++||+.|+++|+|||+++|+|+|+||
T Consensus 3 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~Iv~~k~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~a 82 (151)
T 3bbb_A 3 LERTFIAIKPDGVQRGLVGEIIKRFEQKGFRLVAMKFLRASEEHLKQHYIDLKDRPFFPGLVKYMNSGPVVAMVWEGLNV 82 (151)
T ss_dssp TCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred cceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHHccCCEEEEEEecCCH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
|+.||+++||+||..|.|+|||++||.+..+|+||||||+++|+|||++||++.++.+|.+..++|++|
T Consensus 83 V~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 151 (151)
T 3bbb_A 83 VKTGRVMLGETNPADSKPGTIRGDFCIQVGRNIIHGSDSVKSAEKEISLWFKPEELVDYKSCAHDWVYE 151 (151)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCBTTBCCEEECSSHHHHHHHHHHHCCGGGSCCCCCTTHHHHCC
T ss_pred HHHHHHHhCCCCcccCCCCCcHHHhcCCcccceEEecCCHHHHHHHHHHhCChhhcccccccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999986
No 13
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=1.6e-51 Score=342.01 Aligned_cols=164 Identities=50% Similarity=0.951 Sum_probs=149.0
Q ss_pred ccccccccccc-ccccceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHH
Q 026906 68 ETGIFLPHLVA-SMEQVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEY 146 (231)
Q Consensus 68 ~~d~f~~~~~~-~~~~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~ 146 (231)
.++++++.+.. .....|+||+|||||++++|++|+||++|+++||+|+++||++|++++|++||.+|++++||++|+++
T Consensus 5 ~~~~~~~~~~~~~~~~~erTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~ 84 (169)
T 1zs6_A 5 VLTIFANLFPAACTGAHERTFLAVKPDGVQRRLVGEIVRRFERKGFKLVALKLVQASEELLREHYAELRERPFYGRLVKY 84 (169)
T ss_dssp -------------CGGGCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHH
T ss_pred HHhHhccCcchhhhhhhccEEEEEChhhhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHH
Confidence 45556665431 23568999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hccCceEEEEEccchhHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCcccccccccc
Q 026906 147 ITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQA 226 (231)
Q Consensus 147 mtSGpvvaL~L~g~naV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~ 226 (231)
|+|||+++|+|+|+|||+.||+++||+||..|.|+|||++||.+..+|+||||||+++|+|||++||++.++.+|.+..+
T Consensus 85 mtSGPvvamvleg~~aV~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~ 164 (169)
T 1zs6_A 85 MASGPVVAMVWQGLDVVRTSRALIGATNPADAPPGTIRGDFCIEVGKNLIHGSDSVESARREIALWFRADELLCWEDSAG 164 (169)
T ss_dssp HTSSCEEEEEEESTTHHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCSEEECSSHHHHHHHHHHHSCGGGSCCCCCTTH
T ss_pred hcCCCEEEEEEecCCchHHHHHHhCCCCcccCCCCChHHHHcCCCcCceEEecCCHHHHHHHHHHhCCchhhhcccccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccC
Q 026906 227 QWLRE 231 (231)
Q Consensus 227 ~~~~~ 231 (231)
+|++|
T Consensus 165 ~~~~~ 169 (169)
T 1zs6_A 165 HWLYE 169 (169)
T ss_dssp HHHCC
T ss_pred hhhcC
Confidence 99986
No 14
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=100.00 E-value=2.3e-51 Score=335.28 Aligned_cols=148 Identities=59% Similarity=1.122 Sum_probs=145.1
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
+|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg~~a 81 (150)
T 1pku_A 2 MEQSFIMIKPDGVQRGLIGDIISRFEKKGFYLRGMKFMNVERSFAQQHYADLSDKPFFPGLVEYIISGPVVAMVWEGKDV 81 (150)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSGGGTTSTTHHHHHHHHHSSCEEEEEEESTTH
T ss_pred ceEEEEEEChhHhccccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCccHHHHHHhcCCCEEEEEEeccch
Confidence 58999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
|+.||+++||+||..|.|+|||++||.+..+|+||||||+++|+|||++|| +.++++|.+..++|++|
T Consensus 82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF-~~e~~~~~~~~~~~~~~ 149 (150)
T 1pku_A 82 VATGRRIIGATRPWEAAPGTIRADYAVEVGRNVIHGSDSVDNGKKEIALWF-PEGLAEWRSNLHPWIYE 149 (150)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCSBTTBCSEEECSSHHHHHHHHHHHC-TTCCCCCCCTTHHHHCC
T ss_pred HHHHHHHhCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHhC-cHHhccccccchhhhhc
Confidence 999999999999999999999999999999999999999999999999999 56899999999999986
No 15
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=100.00 E-value=4.5e-51 Score=333.26 Aligned_cols=148 Identities=57% Similarity=1.080 Sum_probs=144.8
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
+|+||+|||||++++|++|+||++|+++||+|+++||++|++++|++||.+|++++||++|+++|+|||+++|+|+|+||
T Consensus 1 ~e~Tl~iIKPdav~~~~~g~Ii~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~~~~kpff~~Lv~~mtSGPvva~vleg~~a 80 (149)
T 1u8w_A 1 MEQTFIMIKPDGVQRGLIGEVICRFEKKGFTLKGLKLISVERSFAEKHYEDLSSKSFFSGLVDYIVSGPVVAMIWEGKNV 80 (149)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTCTTSSSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEECchHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCcchhHHhHhcCCCEEEEEEecCCc
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
|+.||+++||+||..|.|+|||++||.+..+|+||||||+++|.|||++|| +.++++|.+..++|++|
T Consensus 81 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF-~~e~~~~~~~~~~~~~~ 148 (149)
T 1u8w_A 81 VLTGRKIIGATNPAASEPGTIRGDFAIDIGRNVIHGSDSVESARKEIALWF-PDGPVNWQSSVHPWVYE 148 (149)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCSTTSCSEEECSSHHHHHHHHHHHC-TTCCCCCCCTTGGGTSC
T ss_pred hHHHHHHhCCCCcccCCCCCcHHHHCCCCcCceEEecCCHHHHHHHHHHhC-chhhccccccchhhhhc
Confidence 999999999999999999999999999999999999999999999999999 56899999999999986
No 16
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=100.00 E-value=4.1e-51 Score=331.77 Aligned_cols=139 Identities=39% Similarity=0.700 Sum_probs=136.2
Q ss_pred cceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccch
Q 026906 82 QVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAG 161 (231)
Q Consensus 82 ~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~n 161 (231)
.+|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||++|++||+||||+||+|+|+|
T Consensus 6 ~~ErTl~iIKPDav~~~l~g~Ii~rie~~Gf~I~~~k~~~lt~e~a~~fY~~h~~kpff~~Lv~~mtSGPvva~vleg~~ 85 (145)
T 4hr2_A 6 ALERTLSIIKPDAVAKNVIGQIYSRFENAGLKIVAARMAHLSRADAEKFYAVHAERPFFKDLVEFMISGPVMIQVLEGED 85 (145)
T ss_dssp CEEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEET
T ss_pred hHHHeEEEEChHHhhcCCHHHHHHHHHHCCCEEEEEeeecCCHHHHHHHHHHHhcCchHHHHHHHhcCCCEEEEEEEcCC
Confidence 47999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCcccc
Q 026906 162 VVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQ 220 (231)
Q Consensus 162 aV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~ 220 (231)
||+.||+++||+||.+|.|+|||++||.+..+|+||||||+++|+|||++|||+.++++
T Consensus 86 aV~~~R~l~G~tdp~~A~pgtIR~~fg~~~~~N~vHgSDs~e~A~rEi~~fF~~~ei~~ 144 (145)
T 4hr2_A 86 AILKNRDLMGATDPKKAEKGTIRADFADSIDANAVHGSDAPETARVEIAFFFPEMNVYS 144 (145)
T ss_dssp HHHHHHHHHCCSSTTTSCTTSHHHHHCSBTTBCSEEECCSHHHHHHHHHHHCCGGGCCC
T ss_pred cHhHHhhccCCCCcccCCCCCcHHHhcCCcCccceECCCCHHHHHHHHHHhCChhhccc
Confidence 99999999999999999999999999999999999999999999999999999988864
No 17
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.5e-51 Score=339.63 Aligned_cols=152 Identities=53% Similarity=1.013 Sum_probs=141.9
Q ss_pred cccceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEcc
Q 026906 80 MEQVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 159 (231)
Q Consensus 80 ~~~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g 159 (231)
+...|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||++|+++|+|||+++|+|+|
T Consensus 10 ~~~~erTl~iIKPDav~~~liGeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg 89 (161)
T 3b54_A 10 SSQTERTFIAVKPDGVQRGLVSQILSRFEKKGYKLVAIKLVKADDKLLEQHYAEHVGKPFFPKMVSFMKSGPILATVWEG 89 (161)
T ss_dssp CCCCCEEEEEECHHHHHHTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHCC-------CHHHHHHHHSSCEEEEEEES
T ss_pred ccccceEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHhcCCCEEEEEEec
Confidence 35679999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 160 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 160 ~naV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
+|||+.||+++||+||..|.|+|||++||.+..+|+||||||+++|+|||++||++.++.+|.+..++|++|
T Consensus 90 ~naV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~~~~~~~~~ 161 (161)
T 3b54_A 90 KDVVRQGRTILGATNPLGSAPGTIRGDFGIDLGRNVCHGSDSVDSAEREINLWFKKEELVDWESNQAKWIYE 161 (161)
T ss_dssp TTHHHHHHHHHCCSSGGGSCTTSHHHHHCCBTTBCSEEECSSHHHHHHHHHHHSCSTTCCCCCCTTHHHHCC
T ss_pred cChHHHHHHHhCCCCcccCCCCChHHHhcCCCCCceEEeCCCHHHHHHHHHHhCCchhcccccccchhhhcC
Confidence 999999999999999999999999999999999999999999999999999999999999999999999986
No 18
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=100.00 E-value=3.5e-51 Score=335.84 Aligned_cols=150 Identities=45% Similarity=0.884 Sum_probs=146.3
Q ss_pred ccceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccc
Q 026906 81 EQVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGA 160 (231)
Q Consensus 81 ~~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~ 160 (231)
..+|+|++|||||++++|++|+||++|+++||+|+++||++|++++|++||.+|++++||++|+++|+|||+++|+|+|+
T Consensus 7 ~~~~~~~~iIKPDaV~r~~vGeIi~rie~~Gf~Iva~K~~~lt~e~a~~fY~~h~~kpff~~Lv~fmtSGPvvamvleg~ 86 (156)
T 3js9_A 7 HHMERTYIMVKPDGVQRGLIGEILKRFEMKGLKLIAAKFEHPTMDVVAQHYCEHKDKPFFKDLCDFISHGPVFCMIWEGP 86 (156)
T ss_dssp --CEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHHHCCEEEEEEEET
T ss_pred cchhcceEEEChHHHhcccHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHHHHhcCCccHHHHHHHHhcCCCEEEEEecc
Confidence 34799999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hhHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCcccccccccccccc
Q 026906 161 GVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLR 230 (231)
Q Consensus 161 naV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~ 230 (231)
|||+.||+++||+||.+|.|+|||++||.+..+|+||||||+++|+|||++||++.++.+|....++|++
T Consensus 87 naV~~~R~l~G~T~p~~A~PgTIR~~fg~~~~~N~vHgSDs~esA~rEI~~fF~~~e~~~~~~~~~~~~~ 156 (156)
T 3js9_A 87 EAIKIGRNLVGLTSPVESAAGTIRGDFGVVKNFNIVHASSSAEDAARECALWFTPEQLVTWERSVGGWIY 156 (156)
T ss_dssp THHHHHHHHHCCSSGGGSCTTSHHHHHCCSGGGCCEEECCSHHHHHHHHHHHSCGGGCCCCCCTTGGGTC
T ss_pred chHHHHHHhcCCCCccccCCCCHHHHhCCCCCceeEEcCCCHHHHHHHHHHcCChhhcccccccchhhcC
Confidence 9999999999999999999999999999999999999999999999999999999999999999999985
No 19
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=100.00 E-value=4.2e-51 Score=336.88 Aligned_cols=149 Identities=50% Similarity=0.902 Sum_probs=146.2
Q ss_pred cceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccch
Q 026906 82 QVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAG 161 (231)
Q Consensus 82 ~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~n 161 (231)
..|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+|||+++|+|+|+|
T Consensus 6 ~~erTl~iIKPDav~~~l~G~Ii~rie~~Gf~Iv~~K~~~ls~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 85 (160)
T 2dxe_A 6 ETERTLVIIKPDAVVRGLIGEIISRFEKKGLKIVGMKMIWIDRELAEKHYEEHREKPFFKALIDYITKTPVVVMVLEGRY 85 (160)
T ss_dssp CEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEET
T ss_pred cCCeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeccC
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCCCCCCCChhcccccCCCC---cEEEcCCChhhHHHHHhhccCCCccccccccccccccC
Q 026906 162 VVASARKLIGSTDPLQAEPGTIRGDLAVQTGR---NVVHGSDSPENGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 162 aV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~---N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
||+.||+++||+||..|.|+|||++||.+..+ |+||||||+++|+|||++||++.++.+| +..++|++|
T Consensus 86 aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~-~~~~~~~~~ 157 (160)
T 2dxe_A 86 AVEVVRKMAGATDPKDAAPGTIRGDFGLEVSDAICNVIHASDSKESAEREISLFFKPEELFEY-PRAADWFYK 157 (160)
T ss_dssp HHHHHHHHHCCSSGGGSCTTSHHHHHCCCCSSSCCCSEEECSSHHHHHHHHHHHCCGGGCCCC-CCTTHHHHC
T ss_pred HHHHHHHHhCCCCCCcCCCCChHHHhcCCcccCcCceEEcCCCHHHHHHHHHHhCCchhhccc-cchhhhHhc
Confidence 99999999999999999999999999999999 9999999999999999999999999999 999999986
No 20
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=100.00 E-value=1.2e-50 Score=335.17 Aligned_cols=150 Identities=49% Similarity=0.935 Sum_probs=147.6
Q ss_pred cceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccch
Q 026906 82 QVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAG 161 (231)
Q Consensus 82 ~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~n 161 (231)
..|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+|||+++|+|+|+|
T Consensus 7 ~~e~Tl~iIKPDav~~~~~GeIi~rie~~Gf~Iv~~k~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~~ 86 (164)
T 2az3_A 7 HDERTFVMVKPDGVQRGLIGDIVTRLETKGLKMVGGKFMRIDEELAHEHYAEHEDKPFFDGLVSFITSGPVFAMVWEGAD 86 (164)
T ss_dssp CCCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTT
T ss_pred ccceEEEEEChhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEcccc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChh--hHHHHHhhccCCCccccccccccccccC
Q 026906 162 VVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPE--NGKREIGLWFKEGELCQWTPAQAQWLRE 231 (231)
Q Consensus 162 aV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e--~A~rEi~~fFp~~~~~~~~~~~~~~~~~ 231 (231)
||+.||+++||+||..|.|+|||+.||.+..+|+||||||++ +|+|||++||++.++.+|.+..++|++|
T Consensus 87 aV~~~R~l~G~t~p~~a~pgtIR~~fg~~~~~N~vHgSDs~e~gsA~rEi~~fF~~~e~~~~~~~~~~~~~~ 158 (164)
T 2az3_A 87 ATRQVRQLMGATDAQDAAPGTIRGDYGNDLGHNLIHGSDHEDEGANEREIALFFDDDELVDWDRDASAWVYE 158 (164)
T ss_dssp HHHHHHHHHCCSSGGGSCTTSHHHHHCCCSSSCSEEECCTTSTTHHHHHHHHHCCTTSSCCCCCTTHHHHCC
T ss_pred HHHHHHHHhCCCCccccCCCcchhhhcccccCceEEecCCcchhhHHHHHHHcCCchhhcccccchHHHHHh
Confidence 999999999999999999999999999999999999999999 9999999999999999999999999986
No 21
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=100.00 E-value=3.8e-50 Score=325.45 Aligned_cols=141 Identities=41% Similarity=0.757 Sum_probs=138.5
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
.|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (142)
T 2hur_A 2 IERTFSIIKPNAVAKNVIGNIFARFEAAGFKIVGTKMLHLTVEQARGFYAEHDGKPFFDGLVEFMTSGPIVVSVLEGENA 81 (142)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHhcCCCchHHHHHHhcCCCEEEEEEecccH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccc
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTP 223 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~ 223 (231)
|+.||+++||+||.+|.|+|||++||.+..+|+||||||+++|++||++||+..++++|.+
T Consensus 82 V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~ 142 (142)
T 2hur_A 82 VQRHRDLLGATNPANALAGTLRADYADSLTENGTHGSDSVESAAREIAYFFGEGEVCPRTR 142 (142)
T ss_dssp HHHHHHHHCCSSTTTSCTTSHHHHHCSSSTTCSEEECSSHHHHHHHHHHHCCTTCSCCCCC
T ss_pred HHHHHHHhCCCCcccCCCCcchHHhCCCcccceEEeCCCHHHHHHHHHHhCCchhhhccCC
Confidence 9999999999999999999999999999999999999999999999999999999999964
No 22
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=100.00 E-value=4e-50 Score=325.96 Aligned_cols=141 Identities=43% Similarity=0.764 Sum_probs=138.8
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
.|+||+|||||++++|++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+|||+++|+|+|+||
T Consensus 2 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (144)
T 1nhk_R 2 IERTLSIIKPDGLEKGVIGKIISRFEEKGLKPVAIRLQHLSQAQAEGFYAVHKARPFFKDLVQFMISGPVVLMVLEGENA 81 (144)
T ss_dssp EEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred ceEEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeccCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccccc
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQWTP 223 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~ 223 (231)
|+.||+++||+||..|.|+|||++||.+..+|+||||||+++|++||++||+..++++|.+
T Consensus 82 V~~~R~l~G~t~p~~A~pgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~~~ 142 (144)
T 1nhk_R 82 VLANRDIMGATNPAQAAEGTIRKDFATSIDKNTVHGSDSLENAKIEIAYFFRETEIHSYPY 142 (144)
T ss_dssp HHHHHHHHCCSSGGGCCTTSHHHHHCCSSSSCSEEECSSHHHHHHHHHHHCCGGGCCCCCC
T ss_pred HHHHHHHhCCCCCCcCCCCcchHHhCCCCcceeEEeCCCHHHHHHHHHHhCCchhhccccc
Confidence 9999999999999999999999999999999999999999999999999999999999976
No 23
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=100.00 E-value=1e-49 Score=324.03 Aligned_cols=139 Identities=37% Similarity=0.797 Sum_probs=131.0
Q ss_pred ccceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeec-CHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEcc
Q 026906 81 EQVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQC-PKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEG 159 (231)
Q Consensus 81 ~~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~L-s~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g 159 (231)
..+|+||+|||||+++++++|+||++|+++||+|+++||++| ++++|++||.+|++++||+.|+++|+||||++|+|+|
T Consensus 4 ~~~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~l~s~e~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vleg 83 (146)
T 3evo_A 4 AGLQRTLVLIKPDAFERSLVAEIMGRIEKKNFKIVSMKFWSKAPRNLIEQHYKEHSEQSYFNDNCDFMVSGPIISIVYEG 83 (146)
T ss_dssp --CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEESSCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEE
T ss_pred CcceeEEEEEChHHHhcccHHHHHHHHHHCCCEEEEEEEeccCCHHHHHHHHHHHcCCccHHHHHHHHhcCCeEEEEEeC
Confidence 457999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred chhHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccc
Q 026906 160 AGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 219 (231)
Q Consensus 160 ~naV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~ 219 (231)
+|||+.||+++||+||..|.|+|||++||.+..+|+||||||+++|+|||++|||+.++.
T Consensus 84 ~naV~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~ 143 (146)
T 3evo_A 84 TDAISKIRRLQGNTNPLASAPGTIRGDLANDIRENLIHASDSEDSAVDEISIWFPETKME 143 (146)
T ss_dssp TTHHHHHHHHHCCSSTTTCCTTSHHHHHCCSSSCCSEEECCSHHHHHHHHHHHCC-----
T ss_pred CCHHHHHHHHcCCCCcccCCCCChHHHhCCCccceeEEeCCCHHHHHHHHHHcCChhhcC
Confidence 999999999999999999999999999999999999999999999999999999988764
No 24
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=100.00 E-value=2.7e-50 Score=339.55 Aligned_cols=150 Identities=37% Similarity=0.660 Sum_probs=147.2
Q ss_pred ccceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHH-----HhcCCCChHHHHHHhccCceEEE
Q 026906 81 EQVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYK-----DLNSKPFFPKLIEYITSGPVVCM 155 (231)
Q Consensus 81 ~~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~-----~~~~~~~~~~Lv~~mtSGpvvaL 155 (231)
...|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||. +|++++||+.|+++|+||||++|
T Consensus 24 ~~~ErTl~iIKPDav~r~l~G~Ii~rie~~Gf~Iva~K~~~ls~e~a~~fY~~~~~~~h~~kpff~~Lv~~mtSGPvvam 103 (190)
T 4dz6_A 24 MLLQKTLCIVKPDGVRRGLIGDVVSRFERVGLKMVAAKMLIVDESLAKKHYLYDDIVFRHSEAVWNSLIKFISNSPVFTF 103 (190)
T ss_dssp TTEEEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEEECCHHHHHHHSCHHHHHHHTCHHHHHHHHHHHTTSEEEEE
T ss_pred chhhcEEEEEChHHHhcCcHHHHHHHHHHcCCEEEEEEEecCCHHHHHHHhcccccHHhcCccHHHHHHHHhcCCCEEEE
Confidence 3579999999999999999999999999999999999999999999999999 99999999999999999999999
Q ss_pred EEccchhHHHHHHHhCCCCCCCCCCCChhcccccCC----------CCcEEEcCCChhhHHHHHhhccCCCccccccccc
Q 026906 156 AWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQT----------GRNVVHGSDSPENGKREIGLWFKEGELCQWTPAQ 225 (231)
Q Consensus 156 ~L~g~naV~~~r~liGp~dp~~A~P~sLRa~fg~~~----------~~N~vHgSds~e~A~rEi~~fFp~~~~~~~~~~~ 225 (231)
+|+|+|||+.||+++||+||.+|.|+|||++||.+. .+|+||||||+++|+|||++||++.++++|.+..
T Consensus 104 vleG~naV~~~R~l~GpTdP~~A~PgTIRg~fg~~~~~~a~~~~~~~~N~VHgSDS~esA~rEI~~fF~~~e~~~~~~~~ 183 (190)
T 4dz6_A 104 VVEGVESIEVVRKLCGATEPKLAIPGTIRGDFSYHSFKYSNEKGFSIYNVIHASANEADAMREIPIWFKDNEILNYKRDD 183 (190)
T ss_dssp EEEEETHHHHHHHHHCCSSGGGSCTTSHHHHHCCCCHHHHHHHTCCCCCSEEECCSHHHHHHHHHHHCCGGGSCCCCCTT
T ss_pred EEecCCHHHHHHHHcCCCChhhcCCCChHHHhcCChhhhccccccccceeEEcCCCHHHHHHHHHHcCCcHHhccccccc
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred ccccc
Q 026906 226 AQWLR 230 (231)
Q Consensus 226 ~~~~~ 230 (231)
++|++
T Consensus 184 ~~~~y 188 (190)
T 4dz6_A 184 ECEHY 188 (190)
T ss_dssp HHHHT
T ss_pred hhhee
Confidence 99987
No 25
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=100.00 E-value=4e-49 Score=317.70 Aligned_cols=136 Identities=56% Similarity=1.017 Sum_probs=133.4
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
+|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+|||+++|+|+|+||
T Consensus 1 ~erTl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtsGPvva~vl~g~~a 80 (137)
T 1wkj_A 1 MERTFVMIKPDGVRRGLVGEILARFERKGFRIAALKLMQISQELAERHYAEHREKPFFPGLVRFITSGPVVAMVLEGPGV 80 (137)
T ss_dssp CCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHTGGGSSSSSHHHHHHHHTSSCEEEEEEESTTH
T ss_pred CeeEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhcCCCEEEEEEeCCcH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCcc
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGEL 218 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~ 218 (231)
|+.||+++||+||..|.|+|||++||.+..+|+||||||+++|++||++||++.++
T Consensus 81 V~~~R~l~G~t~p~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~ 136 (137)
T 1wkj_A 81 VAEVRKMMGATHPKDALPGTIRGDFATTIDENVIHGSATLEDAQREIALFFRPEEL 136 (137)
T ss_dssp HHHHHHHHCCSSTTTCCTTSHHHHHCCCSTTCSEEECSSHHHHHHHHHHHSCGGGC
T ss_pred HHHHHHHhCCCCCCcCCCCcchHHhCCCcccceEEecCCHHHHHHHHHHhCChhhc
Confidence 99999999999999999999999999999999999999999999999999998775
No 26
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=100.00 E-value=1.3e-49 Score=322.38 Aligned_cols=137 Identities=39% Similarity=0.750 Sum_probs=134.1
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
+|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+|||+++|+|+|+||
T Consensus 3 ~e~Tl~iIKPdav~~~~~g~Ii~~i~~~Gf~I~~~k~~~ls~e~a~~~Y~~~~~kpff~~Lv~~mtSGPvva~vl~g~na 82 (142)
T 3ztp_A 3 VERTLIIVKPDAMEKGALGKILDRFIQEGFQIKALKMFRFTPEKAGEFYYVHRERPFFQELVEFMSSGPVVAAVLEGEDA 82 (142)
T ss_dssp EEEEEEEECHHHHHHTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEEEETH
T ss_pred cceEEEEEChHHHhcccHHHHHHHHHHcCCEEEEEeeccCCHHHHHHHHHHhcCCchHHHHHHHhcCCCEEEEEEeCCCH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCC---CCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccc
Q 026906 163 VASARKLIGSTDPLQA---EPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELC 219 (231)
Q Consensus 163 V~~~r~liGp~dp~~A---~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~ 219 (231)
|+.||+++||+||.+| .|+|||++||.+..+|+||||||+++|+|||++|||+.+++
T Consensus 83 V~~~R~l~G~t~p~~A~~~~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~ 142 (142)
T 3ztp_A 83 IKRVREIIGPTDSEEARKVAPNSIRAQFGTDKGKNAIHASDSPESAQYEICFIFSGLEIV 142 (142)
T ss_dssp HHHHHHHHCCSSHHHHHHHCTTSHHHHHCCSSSSCSEEECCSHHHHHHHHHHHCCGGGCC
T ss_pred HHHHHHhcCCCCHHHhhhcCCCChHHHhCCCCCceeEEeCCCHHHHHHHHHHcCCccccC
Confidence 9999999999999999 89999999999999999999999999999999999987764
No 27
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=100.00 E-value=4.5e-49 Score=325.07 Aligned_cols=139 Identities=57% Similarity=1.058 Sum_probs=137.1
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
.|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+|||+++|+|+|+||
T Consensus 24 ~ErTl~iIKPDav~~~l~GeIi~rie~~Gf~Iv~~K~~~ls~e~a~~fY~~h~~kpff~~Lv~~mtSGPvvamvleg~na 103 (162)
T 1ehw_A 24 RERTLVAVKPDGVQRRLVGDVIQRFERRGFTLVGMKMLQAPESVLAEHYQDLRRKPFYPALIRYMSSGPVVAMVWEGYNV 103 (162)
T ss_dssp GCEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHHTSSCEEEEEEESTTH
T ss_pred hceEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCcchHHHHHHHcCCCEEEEEEechhH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCCccccc
Q 026906 163 VASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEGELCQW 221 (231)
Q Consensus 163 V~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~~~~~~ 221 (231)
|+.||+++||+||..|.|+|||++||.+..+|+|||||++++|+|||++||++.++++|
T Consensus 104 V~~~R~l~G~T~p~~A~PgtIR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~~e~~~~ 162 (162)
T 1ehw_A 104 VRASRAMIGHTDSAEAAPGTIRGDFSVHISRNVIHASDSVEGAQREIQLWFQSSELVSW 162 (162)
T ss_dssp HHHHHHHHCCSSGGGSCTTSHHHHHCCCSSCCSEEECSSHHHHHHHHHHHCCGGGCCCC
T ss_pred HHHHHHHhCCCCCCCCCCCChHHHhCCCCCCeEEEECCCHHHHHHHHHHhCChhhcccC
Confidence 99999999999999999999999999999999999999999999999999999999988
No 28
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=100.00 E-value=2.1e-48 Score=313.12 Aligned_cols=133 Identities=51% Similarity=0.919 Sum_probs=131.1
Q ss_pred ceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccchh
Q 026906 83 VEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGAGV 162 (231)
Q Consensus 83 ~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~na 162 (231)
.|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|++++||+.|+++|+|||+++|+|+|+||
T Consensus 2 ~e~Tl~iIKPdav~~~~~g~Ii~~ie~~Gf~I~~~k~~~ls~~~a~~~Y~~h~~kpff~~Lv~~mtSGPvva~vl~g~~a 81 (136)
T 1k44_A 2 TERTLVLIKPDGIERQLIGEIISRIERKGLTIAALQLRTVSAELASQHYAEHEGKPFFGSLLEFITSGPVVAAIVEGTRA 81 (136)
T ss_dssp CEEEEEEECHHHHHTTCHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHTGGGTTSTTHHHHHHHTTTSCEEEEEEEETTH
T ss_pred ceEEEEEEChHHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHHHHHcCCCchHHHHHHhccCCEEEEEEeCCCH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhCCCCCC-CCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCC
Q 026906 163 VASARKLIGSTDPL-QAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKE 215 (231)
Q Consensus 163 V~~~r~liGp~dp~-~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~ 215 (231)
|+.||+++||+||. .|.|+|||++||.+..+|+||||||+++|++||++||++
T Consensus 82 V~~~R~l~G~t~p~~~A~pgtiR~~fg~~~~~N~vHgSDs~esA~rEi~~fF~~ 135 (136)
T 1k44_A 82 IAAVRQLAGGTDPVQAAAPGTIRGDFALETQFNLVHGSDSAESAQREIALWFPG 135 (136)
T ss_dssp HHHHHHHHCCSSTTTTSCTTSHHHHHCCCSTTCCEEECSSHHHHHHHHHHHSSC
T ss_pred HHHHHHHhCCCCccccCCCCCcHHHhcCCccceEEEeCCCHHHHHHHHHHhCCC
Confidence 99999999999999 999999999999999999999999999999999999986
No 29
>1xqi_A Nucleoside diphosphate kinase; alpha/beta sandwich, ferredoxin fold, transferase; HET: PGE; 2.50A {Pyrobaculum aerophilum} SCOP: d.58.6.1
Probab=100.00 E-value=4.1e-45 Score=309.61 Aligned_cols=149 Identities=42% Similarity=0.721 Sum_probs=134.5
Q ss_pred ccccccccccccccceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHH-------------H---
Q 026906 69 TGIFLPHLVASMEQVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHY-------------K--- 132 (231)
Q Consensus 69 ~d~f~~~~~~~~~~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y-------------~--- 132 (231)
+++.|.+..+ ..|+||+|||||+++++++|+||++|+++||+|+++||+++++++|++|| .
T Consensus 4 ~~~~~~~~~~---~~erTlviIKPDav~r~l~G~Ii~r~e~~Gf~Iv~~K~~~ls~~~a~~fY~~~~~~~~~~~~~a~~~ 80 (195)
T 1xqi_A 4 INIAFFDLIM---PVEKTLLILKPDAVARGLVDEIISRFKKAGLKIVALKMVKASPEEIERFYPSSEEWLQSAGQKLLKA 80 (195)
T ss_dssp -------------CCCEEEEEECHHHHHTTCHHHHHHHHHHHTCEEEEEEEECCCHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred ccccccCccc---hhhcEEEEEchhHhhcccHHHHHHHHHHCCCEEEEEEEecCCHHHHHHHhcchhhhhhhhHHHHHHH
Confidence 3445555332 36999999999999999999999999999999999999999999999999 7
Q ss_pred -----------------HhcCCCChHHHHHHhccCceEEEEEccchhHHHHHHHhCCCCCCCCCCCChhcccccCCCC--
Q 026906 133 -----------------DLNSKPFFPKLIEYITSGPVVCMAWEGAGVVASARKLIGSTDPLQAEPGTIRGDLAVQTGR-- 193 (231)
Q Consensus 133 -----------------~~~~~~~~~~Lv~~mtSGpvvaL~L~g~naV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~-- 193 (231)
+|.+++||+.|+++|+||||++|+|+|+|||+.||+++|||||..|.|+|||+.||.+..+
T Consensus 81 ~~~~~i~~~~~~~~~~~~~~gk~ff~~Lv~~mtsGPvvamvleG~~aV~~~R~l~GpTdP~~A~pgTIRg~fg~~~~~~~ 160 (195)
T 1xqi_A 81 YQELGIDPRAKIGTDDPVEVGRIIKRNLVKYMTSGPNVVMVLKGNRAVEIVRKLVGPTSPHSAPPGTIRGDYSIDSPDLA 160 (195)
T ss_dssp HHHHTCCHHHHHSCCCHHHHHHHHHHHHHHHHTSSCEEEEEEESTTHHHHHHHHHCCSCGGGSCTTSHHHHHCCCCHHHH
T ss_pred HHHhCCChhhhhccccchhcCCcchHHHHHHHcCCCEEEEEEechhHHHHHHHHhCCCCCCcCCCCchhHhhcCchhhhc
Confidence 8999999999999999999999999999999999999999999999999999999999888
Q ss_pred --------cEEEcCCChhhHHHHHhhccCCCcccc
Q 026906 194 --------NVVHGSDSPENGKREIGLWFKEGELCQ 220 (231)
Q Consensus 194 --------N~vHgSds~e~A~rEi~~fFp~~~~~~ 220 (231)
|+||||||+++|+|||++||++.++++
T Consensus 161 ~~~~~~~~N~vHgSDS~esA~rEi~~~F~~~e~~~ 195 (195)
T 1xqi_A 161 AEEGRVVFNLVHASDSPSEAEREIRFWFREEEVLE 195 (195)
T ss_dssp HHTTSCCCCSEEECSSHHHHHHHHHHHCCGGGSCC
T ss_pred cccccccceEEEcCCCHHHHHHHHHHhCChhhccC
Confidence 999999999999999999999988763
No 30
>3bh7_B Protein XRP2; protein-protein complex, GTPase activating protein and GTPase, retinitis pigmentosa, GTP-binding, lipoprotein, myristate; HET: GDP; 1.90A {Homo sapiens} PDB: 3bh6_B* 2bx6_A
Probab=99.97 E-value=1.7e-31 Score=243.85 Aligned_cols=114 Identities=16% Similarity=0.305 Sum_probs=108.5
Q ss_pred ccceEEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHHhcCCCChHHHHHHhccCceEEEEEccc
Q 026906 81 EQVEETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKDLNSKPFFPKLIEYITSGPVVCMAWEGA 160 (231)
Q Consensus 81 ~~~E~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~~~~~~~~~~Lv~~mtSGpvvaL~L~g~ 160 (231)
...|+||+|||||+++++++|+||++|+++||+|+++||++|++++|++||.+|+ ++|++||+|||+++|+|+|+
T Consensus 233 ~~~erTl~iiKPd~v~r~~iG~Ii~r~e~~G~~i~~~K~~~ls~~~a~~~Y~~h~-----~~Lv~~mtsGPvva~vleG~ 307 (352)
T 3bh7_B 233 SSDESCLVVLFAGDYTIANARKLIDEMVGKGFFLVQTKEVSMKAEDAQRVFREKA-----PDFLPLLNKGPVIALEFNGD 307 (352)
T ss_dssp SCCCEEEEEECCSTTHHHHHHHHHHHHHHTTCEEEEEEEECCCHHHHHHHHGGGG-----GGTGGGGGGSCEEEEEEEST
T ss_pred ccccceEEEEcchHhhhcCHHHHHHHHHHCCCEEEEeEeccCCHHHHHHHHHHHH-----HHHHHHhccCCEEEEEEECc
Confidence 4569999999999999999999999999999999999999999999999999998 67999999999999999999
Q ss_pred hhHHHHHHHhCCCCCCCCCCCChhcccccCCCCcEEEcCCChhhHHHHHhhccCCC
Q 026906 161 GVVASARKLIGSTDPLQAEPGTIRGDLAVQTGRNVVHGSDSPENGKREIGLWFKEG 216 (231)
Q Consensus 161 naV~~~r~liGp~dp~~A~P~sLRa~fg~~~~~N~vHgSds~e~A~rEi~~fFp~~ 216 (231)
|||+.||+++|+++| .|+||||||+++|+|||++||+..
T Consensus 308 ~av~~~R~l~g~t~p-----------------gN~vHgSds~esA~~Ei~~fF~~~ 346 (352)
T 3bh7_B 308 GAVEVCQLIVNEIFN-----------------GTKMFVSESKETASGDVDSFYNFA 346 (352)
T ss_dssp THHHHHHHHHHHHCT-----------------TSCEEECSCHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHhcCCCC-----------------CceEEecCCHHHHHHHHHHhcCcc
Confidence 999999999999984 299999999999999999999754
No 31
>2z14_A EF-hand domain-containing family member C2; DUF1126, human EF-hand domain, alternative splicing, polymorphism, signaling protein; 1.68A {Homo sapiens} PDB: 2z13_A
Probab=96.99 E-value=6.9e-05 Score=59.35 Aligned_cols=47 Identities=11% Similarity=0.038 Sum_probs=42.2
Q ss_pred ccceeecchhhh------ccCCCCcccccCCCccCCCchhhhccccccccccccc
Q 026906 30 NKLTLRTTSHLA------AFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHLVA 78 (231)
Q Consensus 30 ~r~fLkr~~~~~------~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~~~~ 78 (231)
++.||||++.+. +++..+||++|++|+++ +|...+.+ +|.||++++.
T Consensus 64 ~g~fLkR~rvpk~~~~~~~~~~~~Dl~VG~~v~i~-gR~f~I~d-cD~fTr~~l~ 116 (133)
T 2z14_A 64 QGTSIRRHRITLPPPDEDQFYTVYHFNVGTEVVFY-GRTFKIYD-CDAFTRNFLR 116 (133)
T ss_dssp CSSEEEEECCBCSTTCTTSBCCGGGCCTTCEEEET-TEEEEEEE-ECHHHHHHHH
T ss_pred CceEEeeeeCCCCCcccCcccCHHHcccCCEEEEe-cEEEEEEe-CCHHHHHHHH
Confidence 789999997653 46899999999999999 99999999 9999999874
No 32
>3js9_A Nucleoside diphosphate kinase family protein; niaid, ssgcid, seattle structural genomics center for infect disease, babesiosis; 2.50A {Babesia bovis} SCOP: d.58.6.0
Probab=61.24 E-value=1.6 Score=35.00 Aligned_cols=35 Identities=6% Similarity=0.063 Sum_probs=30.5
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
.++|+.++.+...|. ||.+|+.+++.+++++||++
T Consensus 107 gTIR~~fg~~~~~N~---vHgSDs~esA~rEI~~fF~~ 141 (156)
T 3js9_A 107 GTIRGDFGVVKNFNI---VHASSSAEDAARECALWFTP 141 (156)
T ss_dssp TSHHHHHCCSGGGCC---EEECCSHHHHHHHHHHHSCG
T ss_pred CCHHHHhCCCCCcee---EEcCCCHHHHHHHHHHcCCh
Confidence 357778899988777 99999999999999999985
No 33
>4hr2_A Nucleoside diphosphate kinase; ssgcid, seattle structural genomics center for infectious DI niaid; HET: ADP; 1.95A {Burkholderia thailandensis} PDB: 4dut_A* 4ek2_A*
Probab=60.92 E-value=1.5 Score=34.75 Aligned_cols=35 Identities=14% Similarity=0.101 Sum_probs=30.4
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhccccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHL 76 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~~ 76 (231)
.+|+.++.+...|. +|.+|+.+.+.+++.+|||+.
T Consensus 106 tIR~~fg~~~~~N~---vHgSDs~e~A~rEi~~fF~~~ 140 (145)
T 4hr2_A 106 TIRADFADSIDANA---VHGSDAPETARVEIAFFFPEM 140 (145)
T ss_dssp SHHHHHCSBTTBCS---EEECCSHHHHHHHHHHHCCGG
T ss_pred CcHHHhcCCcCccc---eECCCCHHHHHHHHHHhCChh
Confidence 46777888888776 999999999999999999974
No 34
>3p04_A Uncharacterized BCR; SEPF homolog, DUF552, PSI-biology, NESG, structural genomics structure initiative; 2.20A {Corynebacterium glutamicum}
Probab=60.14 E-value=9.2 Score=27.60 Aligned_cols=45 Identities=11% Similarity=0.033 Sum_probs=38.4
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHHHH
Q 026906 85 ETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHYKD 133 (231)
Q Consensus 85 ~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y~~ 133 (231)
..+++++|..+.. ..+|.+.|.+..-.|+++. .++.++|+++...
T Consensus 5 ~~Ivv~~P~sy~D--a~~I~d~Lr~~~~VvvNL~--~ld~~~AqRivDF 49 (87)
T 3p04_A 5 STIVPVELHSFED--AQVIGGAFRDGDAVVFDMS--LLSREEARRIVDF 49 (87)
T ss_dssp CSCEEEECSSGGG--HHHHHHHHHTTCCEEEECT--TSCHHHHHHHHHH
T ss_pred cEEEEEecCcHHH--HHHHHHHHHCCCEEEEECC--CCCHHHHHHHHHH
Confidence 4578999999988 8899999999989998888 6789999998543
No 35
>3ztp_A Nucleoside diphosphate kinase; transferase; HET: GOL; 1.37A {Aquifex aeolicus} PDB: 3zto_A* 3ztq_A 3ztr_A 3zts_A
Probab=56.23 E-value=2.1 Score=33.68 Aligned_cols=34 Identities=6% Similarity=-0.087 Sum_probs=29.7
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
++|+.++.+...|. +|.+|+.+++.+++++||++
T Consensus 105 tiR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 138 (142)
T 3ztp_A 105 SIRAQFGTDKGKNA---IHASDSPESAQYEICFIFSG 138 (142)
T ss_dssp SHHHHHCCSSSSCS---EEECCSHHHHHHHHHHHCCG
T ss_pred ChHHHhCCCCCcee---EEeCCCHHHHHHHHHHcCCc
Confidence 46677888888777 99999999999999999996
No 36
>1u8w_A Nucleoside diphosphate kinase I; nucleotide diphosphate, transferase; 2.40A {Arabidopsis thaliana} SCOP: d.58.6.1
Probab=56.03 E-value=2.1 Score=33.94 Aligned_cols=35 Identities=9% Similarity=0.054 Sum_probs=30.4
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
..+|+.++.+...|+ +|.+|+.+++.+++++|||+
T Consensus 99 gtIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 133 (149)
T 1u8w_A 99 GTIRGDFAIDIGRNV---IHGSDSVESARKEIALWFPD 133 (149)
T ss_dssp TSHHHHHCCSTTSCS---EEECSSHHHHHHHHHHHCTT
T ss_pred CCcHHHHCCCCcCce---EEecCCHHHHHHHHHHhCch
Confidence 357778898888777 99999999999999999975
No 37
>1s57_A Nucleoside diphosphate kinase II; transferase; HET: EPE; 1.80A {Arabidopsis thaliana} SCOP: d.58.6.1 PDB: 1s59_A*
Probab=52.28 E-value=2.5 Score=33.64 Aligned_cols=35 Identities=6% Similarity=0.002 Sum_probs=30.4
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
..+|+.++.+...|+ +|.+|+.+++.+++++||++
T Consensus 103 gtIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 137 (153)
T 1s57_A 103 GTIRGDLAVQTGRNI---VHGSDSPENGKREIGLWFKE 137 (153)
T ss_dssp TSHHHHHCCBTTBCC---EEECSSHHHHHHHHHHHSCT
T ss_pred cchHHHhcCCCcCce---EEcCCCHHHHHHHHHHhCCc
Confidence 357777888888777 99999999999999999986
No 38
>3evo_A NDP kinase, NDK, nucleoside diphosphate kinase; phosphotransferase nucleotide binding, ATP-binding, magnesium, metal-binding; HET: TYD; 1.50A {Acanthamoeba polyphaga mimivirus} SCOP: d.58.6.1 PDB: 3ejm_A* 3emt_A* 3em1_A* 3fc9_A* 3g2x_A* 3ena_A* 3dkd_A* 3ddi_A* 3etm_A* 3evm_A* 3fcv_A* 3b6b_A* 2b8p_A* 3gp9_A* 2b8q_A* 3ee3_A* 3elh_A* 3eic_A* 3evw_A* 3gpa_A* ...
Probab=51.84 E-value=2.6 Score=33.32 Aligned_cols=35 Identities=9% Similarity=0.026 Sum_probs=29.2
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhccccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHL 76 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~~ 76 (231)
++|+.++.+...|. +|.+|+.+++.+++.+||++.
T Consensus 106 tiR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~~ 140 (146)
T 3evo_A 106 TIRGDLANDIRENL---IHASDSEDSAVDEISIWFPET 140 (146)
T ss_dssp SHHHHHCCSSSCCS---EEECCSHHHHHHHHHHHCC--
T ss_pred ChHHHhCCCcccee---EEeCCCHHHHHHHHHHcCChh
Confidence 46777888888777 999999999999999999973
No 39
>1k44_A Nucleoside diphosphate kinase; nucleoside triphosphate, transferase; 2.60A {Mycobacterium tuberculosis} SCOP: d.58.6.1
Probab=51.69 E-value=2.8 Score=32.64 Aligned_cols=34 Identities=9% Similarity=0.153 Sum_probs=29.7
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
.+|+.++.+...|. +|.+|+.+++.+++.+||++
T Consensus 102 tiR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 135 (136)
T 1k44_A 102 TIRGDFALETQFNL---VHGSDSAESAQREIALWFPG 135 (136)
T ss_dssp SHHHHHCCCSTTCC---EEECSSHHHHHHHHHHHSSC
T ss_pred CcHHHhcCCccceE---EEeCCCHHHHHHHHHHhCCC
Confidence 47777888887777 99999999999999999985
No 40
>1xiq_A Nucleoside diphosphate kinase B; protein structure initiative, structural genomics, SGPP; 3.05A {Plasmodium falciparum} SCOP: d.58.6.1
Probab=51.50 E-value=2.6 Score=33.71 Aligned_cols=35 Identities=11% Similarity=-0.001 Sum_probs=30.5
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
..+|+.++.+...|. +|.+|+.+++.+++++||++
T Consensus 107 gtIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 141 (157)
T 1xiq_A 107 GTIRGDFCLEVSKNV---IHGSDSVASANKEINIWFKA 141 (157)
T ss_dssp TSHHHHHCCBTTBCS---EEECSSHHHHHHHHHHHCCG
T ss_pred CChHHHhCCCCCcee---EEeCCCHHHHHHHHHHhCCc
Confidence 357777888888777 99999999999999999986
No 41
>3b54_A NDK, NDP kinase, nucleoside diphosphate kinase; alpha/beta sandwich, ATP-binding, magnesium, metal-B mitochondrion; 3.10A {Saccharomyces cerevisiae}
Probab=51.22 E-value=2.7 Score=33.81 Aligned_cols=35 Identities=9% Similarity=0.077 Sum_probs=30.6
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
..+|+.++.+...|. +|.+|+.+++.+++++||++
T Consensus 111 gtIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 145 (161)
T 3b54_A 111 GTIRGDFGIDLGRNV---CHGSDSVDSAEREINLWFKK 145 (161)
T ss_dssp TSHHHHHCCBTTBCS---EEECSSHHHHHHHHHHHSCS
T ss_pred CChHHHhcCCCCCce---EEeCCCHHHHHHHHHHhCCc
Confidence 357778888888777 99999999999999999986
No 42
>1zs6_A Nucleoside diphosphate kinase 3; nucleotide metabolism, apoptosis, transferase, struc genomics, structural genomics consortium, SGC; HET: ADP; 2.30A {Homo sapiens} SCOP: d.58.6.1
Probab=50.38 E-value=3.1 Score=33.68 Aligned_cols=35 Identities=6% Similarity=-0.081 Sum_probs=30.8
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
..+|+.++.+...|+ +|.+|+.+++.+++++||++
T Consensus 119 gtIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 153 (169)
T 1zs6_A 119 GTIRGDFCIEVGKNL---IHGSDSVESARREIALWFRA 153 (169)
T ss_dssp TSHHHHHCCSGGGCS---EEECSSHHHHHHHHHHHSCG
T ss_pred CChHHHHcCCCcCce---EEecCCHHHHHHHHHHhCCc
Confidence 357788899888777 99999999999999999986
No 43
>1wkj_A Nucleoside diphosphate kinase; thermus thermophilus HB8, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.00A {Thermus thermophilus} SCOP: d.58.6.1 PDB: 1wkk_A* 1wkl_A*
Probab=49.55 E-value=3.2 Score=32.35 Aligned_cols=35 Identities=9% Similarity=-0.000 Sum_probs=30.1
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
..+|+.++.+...|+ +|.+|+.+++.+++.+||++
T Consensus 99 gtiR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 133 (137)
T 1wkj_A 99 GTIRGDFATTIDENV---IHGSATLEDAQREIALFFRP 133 (137)
T ss_dssp TSHHHHHCCCSTTCS---EEECSSHHHHHHHHHHHSCG
T ss_pred CcchHHhCCCcccce---EEecCCHHHHHHHHHHhCCh
Confidence 356777888887766 99999999999999999986
No 44
>3r9l_A Nucleoside diphosphate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, giardiasis; 2.65A {Giardia lamblia} SCOP: d.58.6.1
Probab=46.51 E-value=3.7 Score=32.77 Aligned_cols=34 Identities=3% Similarity=-0.094 Sum_probs=29.7
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
++|+.++.+...|. +|.+|+.+++.+++++||+.
T Consensus 106 tIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 139 (155)
T 3r9l_A 106 TIRGDFGIDVGRNI---IHGSANLDDAAREIALWFKP 139 (155)
T ss_dssp SHHHHHCCSSTTCC---EEECSSHHHHHHHHHHHCCS
T ss_pred ChhHHhCCCcccee---EEeCCCHHHHHHHHHHcCCh
Confidence 47777888888776 99999999999999999985
No 45
>1nb2_A Nucleoside diphosphate kinase; bacillus halodenitrifians, transferase; 2.20A {Virgibacillus halodenitrificans} SCOP: d.58.6.1
Probab=46.31 E-value=4.5 Score=32.02 Aligned_cols=35 Identities=11% Similarity=0.019 Sum_probs=30.3
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
..+|+.++.+...|. +|.+|+.+++.+++.+||++
T Consensus 100 gtIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 134 (150)
T 1nb2_A 100 GTIRGDFGVSAGRNA---IHGSDSAGSAAKEIGAFFGG 134 (150)
T ss_dssp TSHHHHSCSCSSSCS---EEECSSHHHHHHHHHHHSCS
T ss_pred CChHHHhcCCcccee---EEeCCCHHHHHHHHHHhCCc
Confidence 357778888887776 99999999999999999986
No 46
>2hur_A NDK, nucleoside diphosphate kinase, NDP kinase; type II tetramer, signaling protein,transferase; 1.62A {Escherichia coli}
Probab=45.43 E-value=3.8 Score=32.10 Aligned_cols=35 Identities=17% Similarity=0.062 Sum_probs=29.9
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
..+|+.++.+...|. +|.+|+.+++.+++.+||++
T Consensus 100 gtiR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 134 (142)
T 2hur_A 100 GTLRADYADSLTENG---THGSDSVESAAREIAYFFGE 134 (142)
T ss_dssp TSHHHHHCSSSTTCS---EEECSSHHHHHHHHHHHCCT
T ss_pred CcchHHhCCCcccce---EEeCCCHHHHHHHHHHhCCc
Confidence 356777888887766 99999999999999999996
No 47
>3fkb_A NDP kinase, NDK, nucleoside diphosphate kinase, cytosolic; AN hexamer structure, ATP-binding, magnesium, metal- nucleotide metabolism; HET: TNM TNV; 1.65A {Dictyostelium discoideum} SCOP: d.58.6.1 PDB: 1b4s_A* 1mn9_A* 1f3f_A* 1hlw_A 1ndk_A 1pae_X 1f6t_A* 1bux_A* 1b99_A* 1hiy_A* 1kdn_A* 1ndc_A* 1ndp_A* 1nsp_A* 1s5z_A* 2bef_A* 1mn7_A* 1hhq_A 1lwx_A* 1npk_A ...
Probab=45.35 E-value=3.7 Score=32.72 Aligned_cols=34 Identities=6% Similarity=-0.058 Sum_probs=29.8
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
++|+.++.+...|. +|.+|+.+.+.+++++||+.
T Consensus 107 tIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 140 (155)
T 3fkb_A 107 SIRGDFGVDVGRNI---IGGSDSVESANREIALWFKP 140 (155)
T ss_dssp SHHHHHCCBTTBCS---EEECSSHHHHHHHHHHHCCG
T ss_pred ChhHHhCCCcccee---EEeCCCHHHHHHHHHHcCCh
Confidence 47777888888777 99999999999999999985
No 48
>2az3_A Nucleoside diphosphate kinase; halophilic, transferase; HET: CDP; 2.20A {Halobacterium salinarum} SCOP: d.58.6.1 PDB: 2az1_A 2zua_A
Probab=45.24 E-value=3.8 Score=32.98 Aligned_cols=35 Identities=9% Similarity=-0.014 Sum_probs=30.3
Q ss_pred hhhhccCCCCcccccCCCccCCCchh--hhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVA--RNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~--~~~~~~d~f~~~ 75 (231)
..+|+.++.+...|. +|.+|+.+ ++.+++++||++
T Consensus 106 gtIR~~fg~~~~~N~---vHgSDs~e~gsA~rEi~~fF~~ 142 (164)
T 2az3_A 106 GTIRGDYGNDLGHNL---IHGSDHEDEGANEREIALFFDD 142 (164)
T ss_dssp TSHHHHHCCCSSSCS---EEECCTTSTTHHHHHHHHHCCT
T ss_pred CcchhhhcccccCce---EEecCCcchhhHHHHHHHcCCc
Confidence 357778898888776 99999999 999999999986
No 49
>1nhk_R Nucleoside diphosphate kinase; phosphotransferase; HET: CMP; 1.90A {Myxococcus xanthus} SCOP: d.58.6.1 PDB: 1nlk_R* 2nck_R 3pj9_A
Probab=44.36 E-value=4.2 Score=31.99 Aligned_cols=35 Identities=9% Similarity=-0.014 Sum_probs=29.9
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
..+|+.++.+...|. +|.+|+.+++.+++++||+.
T Consensus 100 gtIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 134 (144)
T 1nhk_R 100 GTIRKDFATSIDKNT---VHGSDSLENAKIEIAYFFRE 134 (144)
T ss_dssp TSHHHHHCCSSSSCS---EEECSSHHHHHHHHHHHCCG
T ss_pred CcchHHhCCCCccee---EEeCCCHHHHHHHHHHhCCc
Confidence 356777888887766 99999999999999999986
No 50
>2vu5_A Nucleoside diphosphate kinase; nucleotide-binding, ATP-binding, metal-binding, phosphoprotein, nucleotide metabolism, cytoplasm, magnesium; 2.0A {Bacillus anthracis}
Probab=44.20 E-value=4.3 Score=32.02 Aligned_cols=34 Identities=12% Similarity=0.083 Sum_probs=29.7
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
.+|+.++.+...|. +|.+|+.+++.+++.+||++
T Consensus 100 tIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 133 (148)
T 2vu5_A 100 TIRGDFGVTVAKNI---IHGSDSLESAEREIGIFFKE 133 (148)
T ss_dssp SHHHHHCCCSTTCS---EEECSSHHHHHHHHHHHCCG
T ss_pred ChHHHhcCCcccce---EEeCCCHHHHHHHHHHhCCc
Confidence 56777888887766 99999999999999999986
No 51
>3l7u_A Nucleoside diphosphate kinase A; ATP-binding, nucleotide-binding, transferase, tumor suppressor; 2.10A {Homo sapiens}
Probab=43.96 E-value=4.6 Score=32.84 Aligned_cols=34 Identities=9% Similarity=-0.023 Sum_probs=30.1
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
.+|+.++.+...|. +|.+|+.+++.+++++||++
T Consensus 123 TIR~~fg~~~~~N~---VHgSDs~esA~rEI~~fF~~ 156 (172)
T 3l7u_A 123 TIRGDFCIQVGRNI---IHGSDSVESAEKEIGLWFHP 156 (172)
T ss_dssp SHHHHHCCCGGGCC---EEECSSHHHHHHHHHHHCCG
T ss_pred ChhHHhcCCCCCcE---EEeCCCHHHHHHHHHHcCCh
Confidence 47778888888777 99999999999999999996
No 52
>4fkx_A NDK B, nucleoside diphosphate kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: CDP; 1.70A {Trypanosoma brucei brucei} PDB: 4fky_A* 4f4a_A* 4f36_A* 3prv_A 3ngs_A 3ngr_A 3ngt_A* 3ngu_A*
Probab=43.40 E-value=4.2 Score=32.70 Aligned_cols=34 Identities=9% Similarity=0.069 Sum_probs=29.8
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
++|+.++.+...|. +|.+|+.+++.+++++||+.
T Consensus 110 TIR~~fg~~~~~N~---vHgSDs~esA~rEI~~fF~~ 143 (161)
T 4fkx_A 110 TIRGDFAVDVGRNV---CHGSDSVESAKREIAFWFKA 143 (161)
T ss_dssp SHHHHHCCBTTBCC---EEECSSHHHHHHHHHHHCCG
T ss_pred ChhHhhCCCcccee---EEeCCCHHHHHHHHHHcCCh
Confidence 47777888888777 99999999999999999986
No 53
>3q8u_A Nucleoside diphosphate kinase; ferridoxin fold, alpha-beta protein family; HET: ADP; 2.22A {Staphylococcus aureus subsp} PDB: 3q83_A* 3q89_A* 3q86_A* 3q8v_A* 3q8y_A*
Probab=42.86 E-value=4.3 Score=32.45 Aligned_cols=35 Identities=3% Similarity=-0.100 Sum_probs=29.7
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhccccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPHL 76 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~~ 76 (231)
++|+.++.+...|. +|.+|+.+++.+++++||++.
T Consensus 100 tIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~~ 134 (157)
T 3q8u_A 100 SIRGDLGLTVGRNI---IHGSDSLESAEREINLWFNEN 134 (157)
T ss_dssp SHHHHHCCBTTBCS---EEECSSHHHHHHHHHHHCCGG
T ss_pred ChHHHhCCCCCCee---EEeCCCHHHHHHHHHHcCChH
Confidence 46777888877766 999999999999999999963
No 54
>3mpd_A Nucleoside diphosphate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, encepha cuniculi, structural genomics; 2.08A {Encephalitozoon cuniculi} SCOP: d.58.6.0
Probab=40.79 E-value=5 Score=31.84 Aligned_cols=34 Identities=9% Similarity=-0.062 Sum_probs=29.5
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLP 74 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~ 74 (231)
.++|+.++.+...|. +|.+|+.+++.+++++||+
T Consensus 103 gtiR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~ 136 (151)
T 3mpd_A 103 GTIRGDYGVSTGKNI---IHGSDCVENAEKEIKLWIG 136 (151)
T ss_dssp TSHHHHHCCSSTTCS---EEECSSHHHHHHHHHHHTC
T ss_pred CChhHHhCCCcccee---EEeCCCHHHHHHHHHHhCC
Confidence 357777888888777 9999999999999999998
No 55
>3bbb_A Nucleoside diphosphate kinase B; transcription factor, cancer, NM23 GEN, hexamer, activator, oncogene, ATP-binding, cell cycle, DNA-binding; HET: DG DA; 1.30A {Homo sapiens} SCOP: d.58.6.1 PDB: 1nue_A* 3bbf_A* 1nsk_R 3bbc_A 1be4_A* 1bhn_A* 2hvd_A* 1jxv_A* 2hve_A* 1ucn_A* 1nsq_A* 1ndl_A*
Probab=40.73 E-value=4.9 Score=31.84 Aligned_cols=35 Identities=6% Similarity=-0.076 Sum_probs=30.0
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
..+|+.++.+...|. +|.+|+.+++.+++.+||++
T Consensus 101 gtIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 135 (151)
T 3bbb_A 101 GTIRGDFCIQVGRNI---IHGSDSVKSAEKEISLWFKP 135 (151)
T ss_dssp TSHHHHHCCBTTBCC---EEECSSHHHHHHHHHHHCCG
T ss_pred CCcHHHhcCCcccce---EEecCCHHHHHHHHHHhCCh
Confidence 357777888887777 99999999999999999985
No 56
>1pku_A Nucleoside diphosphate kinase I; RICE, transferase; 2.50A {Oryza sativa} SCOP: d.58.6.1
Probab=40.31 E-value=4.8 Score=31.82 Aligned_cols=34 Identities=12% Similarity=0.064 Sum_probs=29.2
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
.+|+.++.+...|. +|.+|+.+++.+++.+|||+
T Consensus 101 tIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 134 (150)
T 1pku_A 101 TIRADYAVEVGRNV---IHGSDSVDNGKKEIALWFPE 134 (150)
T ss_dssp SHHHHHCSBTTBCS---EEECSSHHHHHHHHHHHCTT
T ss_pred ChHHHhCCCcccee---EEeCCCHHHHHHHHHHhCcH
Confidence 56777888887776 99999999999999999974
No 57
>1ehw_A NDPK H4, nucleoside diphosphate kinase; NM23, mitochondrial, killer-O transferase; 2.40A {Homo sapiens} SCOP: d.58.6.1
Probab=35.61 E-value=7.1 Score=31.34 Aligned_cols=34 Identities=6% Similarity=-0.026 Sum_probs=29.4
Q ss_pred hhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 39 HLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 39 ~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
.+|+.++.+...|. +|.+|+.+++.+++++||+.
T Consensus 123 tIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 156 (162)
T 1ehw_A 123 TIRGDFSVHISRNV---IHASDSVEGAQREIQLWFQS 156 (162)
T ss_dssp SHHHHHCCCSSCCS---EEECSSHHHHHHHHHHHCCG
T ss_pred ChHHHhCCCCCCeE---EEECCCHHHHHHHHHHhCCh
Confidence 57777888888766 99999999999999999974
No 58
>2dxe_A Nucleoside diphosphate kinase; nucleoside binding, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: d.58.6.1 PDB: 2dxd_A* 2cwk_A* 2dxf_A* 2dy9_A* 2dya_A*
Probab=34.59 E-value=7.5 Score=31.07 Aligned_cols=34 Identities=6% Similarity=-0.061 Sum_probs=28.9
Q ss_pred hhhccCCCCccc---ccCCCccCCCchhhhcccccccccc
Q 026906 39 HLAAFHPQSHLF---VKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 39 ~~~~~~~~~~l~---~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
.+|+.++.+... |. +|.+|+.+++.+++.+||++
T Consensus 106 tIR~~fg~~~~~~~~N~---vHgSDs~esA~rEi~~fF~~ 142 (160)
T 2dxe_A 106 TIRGDFGLEVSDAICNV---IHASDSKESAEREISLFFKP 142 (160)
T ss_dssp SHHHHHCCCCSSSCCCS---EEECSSHHHHHHHHHHHCCG
T ss_pred ChHHHhcCCcccCcCce---EEcCCCHHHHHHHHHHhCCc
Confidence 466777887776 55 99999999999999999986
No 59
>4dz6_A Nucleoside diphosphate kinase; ssgcid, niaid, vanada transition state mimic, transition state analog, transferas; HET: ADP; 2.20A {Borrelia burgdorferi} PDB: 4di6_A*
Probab=34.10 E-value=7.7 Score=31.98 Aligned_cols=34 Identities=9% Similarity=0.073 Sum_probs=28.9
Q ss_pred hhhccCCCCc----------ccccCCCccCCCchhhhcccccccccc
Q 026906 39 HLAAFHPQSH----------LFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 39 ~~~~~~~~~~----------l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
.+|+.++.+. ..|. +|.+|+.+++.+++.+||++
T Consensus 130 TIRg~fg~~~~~~a~~~~~~~~N~---VHgSDS~esA~rEI~~fF~~ 173 (190)
T 4dz6_A 130 TIRGDFSYHSFKYSNEKGFSIYNV---IHASANEADAMREIPIWFKD 173 (190)
T ss_dssp SHHHHHCCCCHHHHHHHTCCCCCS---EEECCSHHHHHHHHHHHCCG
T ss_pred ChHHHhcCChhhhcccccccccee---EEcCCCHHHHHHHHHHcCCc
Confidence 4667778777 7666 99999999999999999996
No 60
>1w7w_A Nucleoside diphosphate kinase; NDPK3, transferase; 2.80A {Pisum sativum} SCOP: d.58.6.1
Probab=31.84 E-value=9 Score=31.31 Aligned_cols=35 Identities=3% Similarity=-0.141 Sum_probs=30.2
Q ss_pred hhhhccCCCCcccccCCCccCCCchhhhcccccccccc
Q 026906 38 SHLAAFHPQSHLFVKFPPCPQRKTVARNSNETGIFLPH 75 (231)
Q Consensus 38 ~~~~~~~~~~~l~~gs~v~~~~~~~~~~~~~~d~f~~~ 75 (231)
..+|+.++.+...|+ +|.+|+.+.+.+++.+||+.
T Consensus 130 gTIR~~fg~~~~~N~---vHgSDs~esA~rEi~~fF~~ 164 (182)
T 1w7w_A 130 GTIRGDLAVVVGRNI---IHGSDGPETAKDEIKLWFKP 164 (182)
T ss_dssp TSHHHHHCCSGGGCC---EEECCSHHHHHHHHHHHCCG
T ss_pred CChHHHhCCCcccee---EEeCCCHHHHHHHHHHhCCc
Confidence 357777888888777 99999999999999999985
No 61
>4h3v_A Oxidoreductase domain protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, unknown function; HET: MSE; 1.68A {Kribbella flavida}
Probab=22.83 E-value=2.4e+02 Score=23.75 Aligned_cols=43 Identities=14% Similarity=0.019 Sum_probs=35.5
Q ss_pred EEEEEEcCcccccCchHHHHHHHHHcCCeEEeEEEeecCHHHHHHHH
Q 026906 85 ETYIMVKPDGVQRGLVGDIISRFEKKGFKLTGLKLFQCPKDLAEEHY 131 (231)
Q Consensus 85 ~Tl~LIKPdav~~~~~G~II~~I~~~Gf~I~~~kmv~Ls~e~A~e~y 131 (231)
-.++|.-|+..+. ++.....++|..|...|-+.++.++|+++.
T Consensus 77 DaV~I~tP~~~H~----~~~~~al~aGkhVl~EKPla~t~~ea~~l~ 119 (390)
T 4h3v_A 77 QLVDVCTPGDSHA----EIAIAALEAGKHVLCEKPLANTVAEAEAMA 119 (390)
T ss_dssp SEEEECSCGGGHH----HHHHHHHHTTCEEEEESSSCSSHHHHHHHH
T ss_pred CEEEEeCChHHHH----HHHHHHHHcCCCceeecCcccchhHHHHHH
Confidence 4677778887643 666666789999999999999999999983
Done!