BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 026908
         (231 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HUN|A Chain A, Crystal Structure Of Hypothetical Protein Ph0414 From
           Pyrococcus Horikoshii Ot3
 pdb|2HUN|B Chain B, Crystal Structure Of Hypothetical Protein Ph0414 From
           Pyrococcus Horikoshii Ot3
          Length = 336

 Score = 28.9 bits (63), Expect = 2.4,   Method: Compositional matrix adjust.
 Identities = 26/91 (28%), Positives = 40/91 (43%), Gaps = 13/91 (14%)

Query: 49  VHPVLMVIGLVLLNGEAMLAYKTVSGTKKLRKLVHLSLQFIAFLLSLIGVWAAL-KFHND 107
           V   +  I LVLL GE+   Y   +G +K       +L+ +  +L L+G    L +   D
Sbjct: 220 VEDHVRAIELVLLKGESREIYNISAGEEK------TNLEVVKIILRLMGKGEELIELVED 273

Query: 108 K-GIDNFYSLHSWLGLACVFLFGIQWAAGFT 137
           + G D  YSL SW          ++W   +T
Sbjct: 274 RPGHDLRYSLDSW-----KITRDLKWRPKYT 299


>pdb|3IUU|A Chain A, Crystal Structure Of Putative Metallopeptidase
           (Yp_676511.1) From Mesorhizobium Sp. Bnc1 At 2.13 A
           Resolution
          Length = 495

 Score = 28.1 bits (61), Expect = 3.8,   Method: Compositional matrix adjust.
 Identities = 19/36 (52%), Positives = 21/36 (58%), Gaps = 5/36 (13%)

Query: 40  SDNKDL-IFNVHPVLMVIGLVLLNGEAMLAYKTVSG 74
           SD  DL IFNVHP L V G     G+ +LAY   SG
Sbjct: 223 SDVVDLSIFNVHPFLDVPGY----GQVVLAYDNGSG 254


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.328    0.142    0.434 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,554,110
Number of Sequences: 62578
Number of extensions: 257290
Number of successful extensions: 581
Number of sequences better than 100.0: 2
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 581
Number of HSP's gapped (non-prelim): 2
length of query: 231
length of database: 14,973,337
effective HSP length: 96
effective length of query: 135
effective length of database: 8,965,849
effective search space: 1210389615
effective search space used: 1210389615
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 50 (23.9 bits)