Query 026909
Match_columns 231
No_of_seqs 207 out of 1706
Neff 7.8
Searched_HMMs 46136
Date Fri Mar 29 14:24:21 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026909.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026909hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd02970 PRX_like2 Peroxiredoxi 99.9 7.3E-24 1.6E-28 166.1 11.9 137 75-231 1-139 (149)
2 COG1225 Bcp Peroxiredoxin [Pos 99.9 2.4E-22 5.2E-27 159.0 12.9 104 68-177 2-107 (157)
3 PF00578 AhpC-TSA: AhpC/TSA fa 99.8 1.1E-19 2.4E-24 138.1 12.2 100 72-177 1-102 (124)
4 cd03018 PRX_AhpE_like Peroxire 99.8 2.3E-19 5E-24 141.0 11.5 103 70-177 1-107 (149)
5 PRK13599 putative peroxiredoxi 99.8 4.8E-19 1E-23 148.4 11.8 101 70-176 2-110 (215)
6 PRK13190 putative peroxiredoxi 99.8 4E-19 8.7E-24 147.6 11.0 101 69-176 1-109 (202)
7 cd03013 PRX5_like Peroxiredoxi 99.8 4.7E-19 1E-23 141.3 10.1 100 72-177 1-110 (155)
8 TIGR03137 AhpC peroxiredoxin. 99.8 8.7E-19 1.9E-23 143.8 11.3 100 71-176 3-111 (187)
9 PRK13191 putative peroxiredoxi 99.8 1.4E-18 3E-23 145.6 11.8 102 68-176 5-115 (215)
10 cd03016 PRX_1cys Peroxiredoxin 99.8 1.4E-18 2.9E-23 144.5 11.1 99 72-176 1-107 (203)
11 PRK09437 bcp thioredoxin-depen 99.8 3.5E-18 7.5E-23 135.5 12.3 102 69-176 3-106 (154)
12 cd03015 PRX_Typ2cys Peroxiredo 99.8 3.8E-18 8.2E-23 138.1 11.6 99 72-176 1-112 (173)
13 PTZ00137 2-Cys peroxiredoxin; 99.8 2.9E-18 6.4E-23 146.9 11.4 106 67-177 65-182 (261)
14 PRK10382 alkyl hydroperoxide r 99.8 3.6E-18 7.9E-23 140.1 11.4 102 69-176 1-111 (187)
15 cd03017 PRX_BCP Peroxiredoxin 99.8 4.2E-18 9.1E-23 132.3 10.9 98 74-177 1-100 (140)
16 PRK13189 peroxiredoxin; Provis 99.8 4.8E-18 1E-22 143.0 11.6 102 68-176 7-117 (222)
17 cd03014 PRX_Atyp2cys Peroxired 99.7 1.3E-17 2.7E-22 130.5 11.5 99 71-177 1-103 (143)
18 PRK00522 tpx lipid hydroperoxi 99.7 2.2E-17 4.8E-22 133.1 12.3 103 66-176 14-120 (167)
19 PF08534 Redoxin: Redoxin; In 99.7 1.8E-17 3.9E-22 129.9 11.3 99 71-176 1-104 (146)
20 cd02971 PRX_family Peroxiredox 99.7 3E-17 6.5E-22 127.4 11.5 97 75-177 1-100 (140)
21 PRK15000 peroxidase; Provision 99.7 3.5E-17 7.5E-22 135.8 11.7 102 70-176 2-117 (200)
22 PTZ00253 tryparedoxin peroxida 99.7 4.7E-17 1E-21 134.8 11.6 102 69-176 5-119 (199)
23 COG0450 AhpC Peroxiredoxin [Po 99.7 1.3E-16 2.7E-21 129.3 10.3 110 69-184 2-128 (194)
24 PTZ00056 glutathione peroxidas 99.7 2.2E-16 4.8E-21 130.9 11.3 90 68-164 11-110 (199)
25 KOG0855 Alkyl hydroperoxide re 99.7 9.3E-17 2E-21 126.4 7.7 108 67-177 60-167 (211)
26 PF13911 AhpC-TSA_2: AhpC/TSA 99.7 2.8E-16 6.1E-21 118.9 9.9 102 122-231 2-104 (115)
27 KOG4498 Uncharacterized conser 99.7 2.8E-16 6.1E-21 126.0 8.7 135 82-231 35-169 (197)
28 cd00340 GSH_Peroxidase Glutath 99.7 2.7E-16 5.8E-21 124.7 8.2 91 76-174 2-106 (152)
29 cd02969 PRX_like1 Peroxiredoxi 99.7 1.2E-15 2.5E-20 123.2 11.6 98 73-176 1-108 (171)
30 PTZ00256 glutathione peroxidas 99.7 9.6E-16 2.1E-20 125.4 10.9 86 73-164 17-113 (183)
31 PLN02399 phospholipid hydroper 99.6 5.1E-15 1.1E-19 125.4 12.9 91 70-167 73-176 (236)
32 PRK03147 thiol-disulfide oxido 99.6 5.8E-15 1.3E-19 118.6 12.0 104 66-176 31-137 (173)
33 PLN02412 probable glutathione 99.6 3.5E-15 7.7E-20 120.3 9.8 87 74-167 7-106 (167)
34 TIGR02661 MauD methylamine deh 99.6 7.5E-15 1.6E-19 120.7 11.5 103 67-176 43-145 (189)
35 cd02968 SCO SCO (an acronym fo 99.6 1.4E-14 2.9E-19 112.7 10.0 96 75-177 1-109 (142)
36 cd03012 TlpA_like_DipZ_like Tl 99.6 9.7E-15 2.1E-19 112.0 8.6 84 86-176 13-104 (126)
37 TIGR02540 gpx7 putative glutat 99.6 7.6E-15 1.6E-19 116.4 8.2 82 76-164 2-94 (153)
38 PRK15412 thiol:disulfide inter 99.6 2E-14 4.3E-19 117.7 9.3 99 69-176 38-141 (185)
39 cd03010 TlpA_like_DsbE TlpA-li 99.5 5.6E-14 1.2E-18 107.6 9.5 97 74-177 1-100 (127)
40 TIGR00385 dsbE periplasmic pro 99.5 6.4E-14 1.4E-18 113.4 9.5 99 69-176 33-136 (173)
41 cd02967 mauD Methylamine utili 99.5 1.8E-13 3.9E-18 102.6 10.9 91 77-176 1-94 (114)
42 KOG0854 Alkyl hydroperoxide re 99.5 9.6E-13 2.1E-17 104.7 12.1 103 67-175 3-116 (224)
43 PRK14018 trifunctional thiored 99.5 6.6E-13 1.4E-17 123.6 12.2 108 70-187 32-149 (521)
44 cd02966 TlpA_like_family TlpA- 99.4 1.1E-12 2.3E-17 96.6 10.9 92 78-176 1-96 (116)
45 PRK10606 btuE putative glutath 99.4 5.1E-13 1.1E-17 109.3 9.7 92 74-173 3-111 (183)
46 cd03011 TlpA_like_ScsD_MtbDsbE 99.4 1.9E-12 4.1E-17 98.3 10.0 89 77-177 1-93 (123)
47 cd03008 TryX_like_RdCVF Trypar 99.4 4.8E-12 1E-16 99.8 10.9 97 87-188 16-123 (146)
48 cd03009 TryX_like_TryX_NRX Try 99.3 4.7E-12 1E-16 97.5 8.9 101 81-188 3-110 (131)
49 KOG0852 Alkyl hydroperoxide re 99.3 1.2E-11 2.6E-16 98.4 9.2 101 70-176 4-116 (196)
50 PRK13728 conjugal transfer pro 99.3 1.1E-11 2.4E-16 100.8 9.0 95 71-188 50-147 (181)
51 PLN02919 haloacid dehalogenase 99.3 9.8E-12 2.1E-16 125.1 9.9 107 68-182 389-506 (1057)
52 COG0678 AHP1 Peroxiredoxin [Po 99.3 1E-11 2.2E-16 96.5 6.9 107 69-177 2-118 (165)
53 TIGR01626 ytfJ_HI0045 conserve 99.3 1.7E-11 3.6E-16 100.2 8.2 111 63-182 16-149 (184)
54 cd02964 TryX_like_family Trypa 99.2 3.3E-11 7.2E-16 93.1 8.6 94 82-182 4-103 (132)
55 KOG0541 Alkyl hydroperoxide re 99.2 1.1E-11 2.5E-16 96.8 5.7 110 66-177 5-124 (171)
56 COG2077 Tpx Peroxiredoxin [Pos 99.1 1.1E-09 2.5E-14 85.3 9.4 106 66-176 14-120 (158)
57 PF13905 Thioredoxin_8: Thiore 99.0 2E-09 4.3E-14 78.0 9.5 78 100-177 1-82 (95)
58 PF02630 SCO1-SenC: SCO1/SenC; 98.8 4.2E-08 9E-13 79.6 9.9 78 72-153 28-112 (174)
59 KOG2792 Putative cytochrome C 98.8 2.5E-08 5.4E-13 84.2 8.6 58 68-132 114-172 (280)
60 TIGR02738 TrbB type-F conjugat 98.7 3.3E-08 7.1E-13 78.7 6.2 49 85-144 43-91 (153)
61 COG1999 Uncharacterized protei 98.7 1.2E-07 2.7E-12 79.0 9.2 71 78-152 49-127 (207)
62 cd02950 TxlA TRX-like protein 98.5 7.2E-08 1.6E-12 75.7 4.2 85 80-169 2-89 (142)
63 cd02985 TRX_CDSP32 TRX family, 98.5 4.1E-07 8.9E-12 67.3 7.5 57 100-158 15-74 (103)
64 KOG2501 Thioredoxin, nucleored 98.5 3.7E-07 7.9E-12 72.2 6.4 104 79-189 15-127 (157)
65 PF00255 GSHPx: Glutathione pe 98.4 2.7E-06 5.9E-11 63.7 9.3 75 78-157 3-88 (108)
66 cd02948 TRX_NDPK TRX domain, T 98.3 1.3E-06 2.9E-11 64.4 6.4 51 100-150 17-67 (102)
67 TIGR02740 TraF-like TraF-like 98.2 2.1E-06 4.5E-11 74.5 6.1 73 86-176 156-228 (271)
68 cd02999 PDI_a_ERp44_like PDIa 98.2 3.9E-06 8.5E-11 61.8 6.4 42 99-142 17-58 (100)
69 cd02963 TRX_DnaJ TRX domain, D 98.2 5.4E-06 1.2E-10 62.1 7.1 46 100-145 24-69 (111)
70 COG0386 BtuE Glutathione perox 98.2 6.5E-06 1.4E-10 64.7 7.7 77 76-157 5-92 (162)
71 cd03003 PDI_a_ERdj5_N PDIa fam 98.0 2E-05 4.3E-10 57.6 7.0 44 101-145 19-62 (101)
72 cd02993 PDI_a_APS_reductase PD 98.0 2E-05 4.3E-10 58.7 6.7 44 100-143 21-64 (109)
73 cd02956 ybbN ybbN protein fami 98.0 1.7E-05 3.8E-10 57.2 6.2 63 100-164 12-74 (96)
74 cd03000 PDI_a_TMX3 PDIa family 98.0 1.8E-05 3.9E-10 58.2 6.1 44 101-144 16-61 (104)
75 PF05988 DUF899: Bacterial pro 98.0 3.4E-05 7.4E-10 63.9 8.1 101 70-175 40-147 (211)
76 cd02994 PDI_a_TMX PDIa family, 98.0 2.8E-05 6E-10 56.7 6.8 65 101-168 18-82 (101)
77 cd02962 TMX2 TMX2 family; comp 97.9 2.8E-05 6.1E-10 61.8 6.3 47 100-146 47-93 (152)
78 cd02959 ERp19 Endoplasmic reti 97.9 2E-05 4.4E-10 59.7 5.2 71 100-172 19-92 (117)
79 cd02995 PDI_a_PDI_a'_C PDIa fa 97.9 3.1E-05 6.8E-10 56.2 6.0 58 100-158 18-76 (104)
80 cd02953 DsbDgamma DsbD gamma f 97.9 5E-05 1.1E-09 55.7 7.1 68 100-169 11-86 (104)
81 cd02951 SoxW SoxW family; SoxW 97.9 3.5E-05 7.5E-10 58.6 6.2 44 100-144 13-60 (125)
82 cd02997 PDI_a_PDIR PDIa family 97.9 3.8E-05 8.3E-10 55.8 6.1 43 101-143 18-61 (104)
83 cd02952 TRP14_like Human TRX-r 97.9 3.8E-05 8.3E-10 58.5 6.1 61 100-176 21-88 (119)
84 cd03006 PDI_a_EFP1_N PDIa fami 97.8 4.8E-05 1E-09 57.4 5.9 45 101-146 30-74 (113)
85 cd03002 PDI_a_MPD1_like PDI fa 97.8 6.9E-05 1.5E-09 55.2 6.6 43 100-143 18-60 (109)
86 cd02949 TRX_NTR TRX domain, no 97.8 8.6E-05 1.9E-09 53.9 6.7 45 100-145 13-57 (97)
87 PRK09381 trxA thioredoxin; Pro 97.8 6.9E-05 1.5E-09 55.4 6.3 45 101-146 22-66 (109)
88 cd03004 PDI_a_ERdj5_C PDIa fam 97.8 8.3E-05 1.8E-09 54.4 6.6 45 101-146 20-64 (104)
89 PRK10996 thioredoxin 2; Provis 97.8 3.4E-05 7.4E-10 60.2 4.5 66 90-158 44-109 (139)
90 KOG1651 Glutathione peroxidase 97.8 0.0001 2.2E-09 58.7 6.9 79 75-157 13-102 (171)
91 cd03005 PDI_a_ERp46 PDIa famil 97.7 8.8E-05 1.9E-09 53.8 6.1 43 103-145 19-63 (102)
92 cd02996 PDI_a_ERp44 PDIa famil 97.7 0.00014 3.1E-09 53.7 7.3 45 100-144 18-67 (108)
93 cd02954 DIM1 Dim1 family; Dim1 97.7 0.00011 2.3E-09 55.6 6.6 45 101-146 15-59 (114)
94 PTZ00051 thioredoxin; Provisio 97.7 0.00014 3E-09 52.5 6.4 42 101-144 19-60 (98)
95 cd02986 DLP Dim1 family, Dim1- 97.6 0.00016 3.4E-09 54.6 6.2 46 100-146 14-59 (114)
96 cd02998 PDI_a_ERp38 PDIa famil 97.6 0.00017 3.7E-09 52.3 6.2 44 100-143 18-62 (105)
97 TIGR01126 pdi_dom protein disu 97.6 0.00013 2.7E-09 52.7 5.4 68 100-168 13-81 (102)
98 cd02984 TRX_PICOT TRX domain, 97.6 0.00022 4.8E-09 51.3 6.4 42 101-143 15-56 (97)
99 PHA02278 thioredoxin-like prot 97.6 0.00016 3.5E-09 53.6 5.7 43 100-143 14-56 (103)
100 TIGR01295 PedC_BrcD bacterioci 97.6 0.00023 5.1E-09 54.3 6.2 40 100-142 23-62 (122)
101 KOG0907 Thioredoxin [Posttrans 97.5 0.00019 4E-09 53.6 5.5 41 101-143 22-62 (106)
102 PF00085 Thioredoxin: Thioredo 97.5 0.00063 1.4E-08 49.0 7.6 43 101-144 18-60 (103)
103 cd02992 PDI_a_QSOX PDIa family 97.5 0.00049 1.1E-08 51.8 7.0 42 101-142 20-63 (114)
104 cd03001 PDI_a_P5 PDIa family, 97.5 0.00049 1.1E-08 49.9 6.9 44 101-145 19-62 (103)
105 cd02961 PDI_a_family Protein D 97.4 0.0004 8.6E-09 49.4 6.0 43 101-143 16-59 (101)
106 PLN00410 U5 snRNP protein, DIM 97.4 0.00047 1E-08 54.1 6.5 45 101-146 24-68 (142)
107 TIGR01068 thioredoxin thioredo 97.4 0.00031 6.6E-09 50.4 5.0 44 101-145 15-58 (101)
108 TIGR00424 APS_reduc 5'-adenyly 97.3 0.00041 9E-09 64.4 5.9 45 100-144 371-415 (463)
109 KOG0910 Thioredoxin-like prote 97.3 0.00048 1E-08 54.2 4.9 42 101-143 62-103 (150)
110 TIGR00411 redox_disulf_1 small 97.3 0.0012 2.6E-08 45.8 6.6 41 103-144 2-42 (82)
111 COG0526 TrxA Thiol-disulfide i 97.3 0.0012 2.7E-08 47.1 6.8 56 101-157 33-91 (127)
112 cd02957 Phd_like Phosducin (Ph 97.2 0.0015 3.3E-08 48.8 7.1 42 101-144 25-66 (113)
113 cd02947 TRX_family TRX family; 97.2 0.0012 2.5E-08 45.9 6.0 41 101-143 11-51 (93)
114 cd02975 PfPDO_like_N Pyrococcu 97.2 0.0015 3.2E-08 49.1 6.6 42 101-144 23-64 (113)
115 PTZ00443 Thioredoxin domain-co 97.1 0.0014 3E-08 55.4 6.5 43 101-144 53-95 (224)
116 PLN02309 5'-adenylylsulfate re 97.1 0.0015 3.3E-08 60.6 6.8 43 100-142 365-407 (457)
117 PF13098 Thioredoxin_2: Thiore 97.0 0.00079 1.7E-08 49.7 4.1 73 100-176 5-81 (112)
118 COG3118 Thioredoxin domain-con 97.0 0.0016 3.4E-08 56.7 6.4 44 101-145 44-87 (304)
119 TIGR01130 ER_PDI_fam protein d 97.0 0.0021 4.5E-08 59.0 6.9 58 101-158 19-78 (462)
120 COG4312 Uncharacterized protei 96.9 0.0038 8.3E-08 52.0 7.0 93 78-175 54-153 (247)
121 PF00837 T4_deiodinase: Iodoth 96.8 0.00082 1.8E-08 56.8 2.9 103 67-175 70-200 (237)
122 cd01659 TRX_superfamily Thiore 96.8 0.0027 5.9E-08 40.1 4.8 45 104-150 1-45 (69)
123 cd02989 Phd_like_TxnDC9 Phosdu 96.8 0.0049 1.1E-07 46.2 6.8 42 101-144 23-64 (113)
124 PTZ00102 disulphide isomerase; 96.8 0.002 4.3E-08 59.7 5.5 67 100-168 375-443 (477)
125 PF13899 Thioredoxin_7: Thiore 96.8 0.0088 1.9E-07 41.9 7.6 63 100-165 17-82 (82)
126 cd02955 SSP411 TRX domain, SSP 96.8 0.0083 1.8E-07 46.0 7.8 68 100-169 15-93 (124)
127 cd02987 Phd_like_Phd Phosducin 96.8 0.0035 7.5E-08 50.9 5.9 42 101-144 84-125 (175)
128 cd03065 PDI_b_Calsequestrin_N 96.7 0.0049 1.1E-07 47.0 6.2 44 101-144 28-76 (120)
129 cd02982 PDI_b'_family Protein 96.7 0.0051 1.1E-07 44.5 6.0 44 101-145 13-56 (103)
130 cd02965 HyaE HyaE family; HyaE 96.7 0.007 1.5E-07 45.5 6.4 43 101-144 28-72 (111)
131 PRK00293 dipZ thiol:disulfide 96.6 0.0054 1.2E-07 58.7 7.2 67 100-169 474-547 (571)
132 cd02973 TRX_GRX_like Thioredox 96.5 0.012 2.7E-07 39.3 6.3 39 104-144 3-41 (67)
133 PF04592 SelP_N: Selenoprotein 96.5 0.028 6E-07 47.5 9.5 91 75-176 9-109 (238)
134 cd02960 AGR Anterior Gradient 96.5 0.0042 9E-08 48.0 4.3 99 100-203 23-124 (130)
135 TIGR00412 redox_disulf_2 small 96.4 0.0086 1.9E-07 41.6 5.4 52 107-164 5-56 (76)
136 PTZ00102 disulphide isomerase; 96.4 0.0086 1.9E-07 55.4 7.0 46 100-145 49-96 (477)
137 PF13728 TraF: F plasmid trans 96.3 0.007 1.5E-07 50.8 5.1 61 101-176 122-182 (215)
138 PRK13703 conjugal pilus assemb 96.3 0.0066 1.4E-07 52.0 4.8 39 101-143 145-183 (248)
139 TIGR01130 ER_PDI_fam protein d 96.1 0.011 2.3E-07 54.3 5.9 45 100-144 364-410 (462)
140 TIGR02739 TraF type-F conjugat 96.1 0.0097 2.1E-07 51.2 4.8 62 101-177 152-213 (256)
141 PTZ00062 glutaredoxin; Provisi 96.0 0.014 3E-07 48.6 5.3 40 101-142 18-57 (204)
142 cd02988 Phd_like_VIAF Phosduci 95.8 0.018 3.9E-07 47.4 5.3 41 101-143 103-143 (192)
143 TIGR02187 GlrX_arch Glutaredox 95.8 0.039 8.6E-07 46.0 7.4 43 100-144 133-175 (215)
144 cd03026 AhpF_NTD_C TRX-GRX-lik 95.7 0.044 9.6E-07 39.3 6.4 43 100-144 12-54 (89)
145 PF07976 Phe_hydrox_dim: Pheno 95.4 0.044 9.5E-07 44.2 6.0 112 66-177 26-166 (169)
146 TIGR02187 GlrX_arch Glutaredox 95.3 0.054 1.2E-06 45.2 6.4 40 101-142 21-62 (215)
147 PHA02125 thioredoxin-like prot 95.2 0.067 1.5E-06 36.8 5.7 33 104-143 2-34 (75)
148 TIGR02196 GlrX_YruB Glutaredox 95.1 0.14 3E-06 34.0 7.0 51 104-164 2-56 (74)
149 TIGR02200 GlrX_actino Glutared 95.1 0.073 1.6E-06 36.0 5.5 36 104-146 2-37 (77)
150 KOG0908 Thioredoxin-like prote 94.2 0.063 1.4E-06 45.8 4.1 31 100-130 21-51 (288)
151 PRK11200 grxA glutaredoxin 1; 94.1 0.21 4.6E-06 35.0 6.2 38 104-143 3-40 (85)
152 KOG0191 Thioredoxin/protein di 93.7 0.16 3.6E-06 46.0 6.3 55 101-157 49-103 (383)
153 PF14595 Thioredoxin_9: Thiore 93.7 0.1 2.2E-06 40.2 4.2 63 101-166 42-107 (129)
154 KOG0190 Protein disulfide isom 93.7 0.1 2.3E-06 48.8 4.9 55 101-158 43-102 (493)
155 PF06110 DUF953: Eukaryotic pr 93.5 0.2 4.3E-06 38.1 5.3 44 101-145 21-70 (119)
156 TIGR02180 GRX_euk Glutaredoxin 93.4 0.24 5.3E-06 34.1 5.4 55 105-164 2-61 (84)
157 PF00462 Glutaredoxin: Glutare 93.4 0.33 7.1E-06 31.6 5.6 52 104-164 1-56 (60)
158 cd02958 UAS UAS family; UAS is 93.2 0.42 9.1E-06 35.4 6.7 66 100-168 17-89 (114)
159 cd02976 NrdH NrdH-redoxin (Nrd 93.1 0.57 1.2E-05 30.9 6.7 53 104-166 2-58 (73)
160 cd03023 DsbA_Com1_like DsbA fa 92.9 0.19 4.2E-06 38.5 4.7 38 100-139 5-42 (154)
161 TIGR02190 GlrX-dom Glutaredoxi 92.1 0.64 1.4E-05 32.2 6.1 47 104-157 10-59 (79)
162 cd03029 GRX_hybridPRX5 Glutare 92.1 0.61 1.3E-05 31.5 5.8 51 105-164 4-57 (72)
163 smart00594 UAS UAS domain. 91.8 1 2.2E-05 33.9 7.4 65 100-167 27-97 (122)
164 KOG0191 Thioredoxin/protein di 91.7 0.36 7.8E-06 43.8 5.6 56 101-157 164-220 (383)
165 KOG3425 Uncharacterized conser 91.6 0.55 1.2E-05 35.7 5.4 35 110-145 43-77 (128)
166 PF13462 Thioredoxin_4: Thiore 91.5 0.59 1.3E-05 36.3 6.0 42 100-141 12-54 (162)
167 KOG0190 Protein disulfide isom 91.5 0.26 5.6E-06 46.2 4.3 33 100-132 384-416 (493)
168 PF09695 YtfJ_HI0045: Bacteria 91.4 2.1 4.5E-05 34.2 8.7 104 70-178 1-124 (160)
169 cd02066 GRX_family Glutaredoxi 90.1 1.3 2.8E-05 28.8 5.8 46 105-157 3-52 (72)
170 cd03027 GRX_DEP Glutaredoxin ( 90.0 2 4.3E-05 29.0 6.8 50 106-164 5-58 (73)
171 TIGR00365 monothiol glutaredox 89.9 1.6 3.5E-05 31.6 6.6 55 101-164 12-74 (97)
172 cd03419 GRX_GRXh_1_2_like Glut 89.9 1.2 2.5E-05 30.5 5.7 34 105-143 3-36 (82)
173 TIGR02194 GlrX_NrdH Glutaredox 89.8 1.5 3.2E-05 29.6 6.0 46 105-157 2-50 (72)
174 cd03028 GRX_PICOT_like Glutare 89.5 1.7 3.7E-05 30.9 6.4 46 110-164 21-70 (90)
175 cd03418 GRX_GRXb_1_3_like Glut 89.2 2.4 5.2E-05 28.4 6.8 52 104-164 2-58 (75)
176 COG0695 GrxC Glutaredoxin and 89.0 1.5 3.3E-05 30.6 5.7 52 105-165 4-61 (80)
177 PRK10329 glutaredoxin-like pro 88.8 2.3 4.9E-05 29.8 6.5 52 104-165 3-57 (81)
178 PRK01655 spxA transcriptional 88.5 0.72 1.6E-05 35.5 4.1 66 104-177 2-71 (131)
179 TIGR02189 GlrX-like_plant Glut 88.2 1.3 2.8E-05 32.3 5.1 32 103-142 10-41 (99)
180 TIGR02181 GRX_bact Glutaredoxi 88.0 1.9 4.2E-05 29.4 5.7 51 105-164 2-56 (79)
181 COG4232 Thiol:disulfide interc 87.5 0.64 1.4E-05 44.2 3.8 79 90-169 464-547 (569)
182 TIGR02183 GRXA Glutaredoxin, G 87.4 1.8 4E-05 30.4 5.3 37 104-142 2-38 (86)
183 PRK10824 glutaredoxin-4; Provi 86.9 2.5 5.5E-05 31.9 6.1 56 101-165 15-78 (115)
184 PHA03050 glutaredoxin; Provisi 86.9 2.8 6E-05 31.1 6.3 19 106-124 17-35 (108)
185 PRK10638 glutaredoxin 3; Provi 86.0 3 6.5E-05 28.9 5.8 47 104-157 4-54 (83)
186 KOG1731 FAD-dependent sulfhydr 85.7 0.41 8.9E-06 45.4 1.5 51 102-152 59-111 (606)
187 cd02979 PHOX_C FAD-dependent P 85.2 5.5 0.00012 31.9 7.7 104 73-177 1-134 (167)
188 cd03032 ArsC_Spx Arsenate Redu 84.6 2.3 5E-05 31.7 4.9 66 104-177 2-71 (115)
189 cd02977 ArsC_family Arsenate R 84.2 2.1 4.5E-05 31.3 4.5 64 105-176 2-69 (105)
190 TIGR01617 arsC_related transcr 84.1 2.4 5.1E-05 31.7 4.8 64 105-176 2-69 (117)
191 cd03007 PDI_a_ERp29_N PDIa fam 83.9 1.9 4.2E-05 32.6 4.2 50 90-143 10-61 (116)
192 cd03019 DsbA_DsbA DsbA family, 83.2 2.2 4.8E-05 33.6 4.6 37 101-138 16-52 (178)
193 COG2179 Predicted hydrolase of 83.1 3.4 7.3E-05 33.4 5.4 40 118-157 47-86 (175)
194 cd03036 ArsC_like Arsenate Red 83.0 2.3 4.9E-05 31.6 4.3 65 105-177 2-70 (111)
195 PRK11657 dsbG disulfide isomer 81.9 9.4 0.0002 32.6 8.2 28 100-127 117-144 (251)
196 PRK10877 protein disulfide iso 81.8 2.9 6.3E-05 35.4 5.0 36 100-139 107-142 (232)
197 cd03020 DsbA_DsbC_DsbG DsbA fa 81.2 2.8 6.1E-05 34.1 4.6 24 101-124 78-101 (197)
198 PRK13344 spxA transcriptional 80.7 4.9 0.00011 30.9 5.5 66 104-177 2-71 (132)
199 PRK12559 transcriptional regul 80.5 5.3 0.00011 30.7 5.6 66 104-177 2-71 (131)
200 cd03035 ArsC_Yffb Arsenate Red 80.0 3.4 7.4E-05 30.4 4.3 62 105-176 2-67 (105)
201 TIGR03759 conj_TIGR03759 integ 79.9 14 0.0003 30.7 8.0 69 101-175 110-184 (200)
202 PF13192 Thioredoxin_3: Thiore 79.5 8.4 0.00018 26.3 5.9 36 109-147 7-42 (76)
203 PF03190 Thioredox_DsbH: Prote 79.1 1.5 3.3E-05 35.2 2.2 68 100-169 37-115 (163)
204 PF05768 DUF836: Glutaredoxin- 75.2 6.1 0.00013 27.4 4.3 56 104-165 2-57 (81)
205 KOG0912 Thiol-disulfide isomer 73.7 9.4 0.0002 33.9 5.8 32 101-132 14-45 (375)
206 cd02972 DsbA_family DsbA famil 73.6 5 0.00011 27.4 3.5 35 105-140 2-36 (98)
207 PRK08294 phenol 2-monooxygenas 71.1 15 0.00032 35.8 7.2 111 67-177 460-597 (634)
208 KOG1752 Glutaredoxin and relat 70.4 11 0.00023 28.0 4.7 54 101-164 14-74 (104)
209 PTZ00062 glutaredoxin; Provisi 68.7 20 0.00042 29.8 6.5 55 101-164 113-175 (204)
210 COG1651 DsbG Protein-disulfide 65.8 18 0.00038 30.3 5.8 47 82-132 70-116 (244)
211 TIGR00014 arsC arsenate reduct 64.4 19 0.00041 26.8 5.1 65 105-177 2-71 (114)
212 TIGR00995 3a0901s06TIC22 chlor 63.0 16 0.00035 31.7 5.1 93 71-175 77-169 (270)
213 COG3019 Predicted metal-bindin 62.1 25 0.00055 27.5 5.4 47 101-157 25-71 (149)
214 COG2910 Putative NADH-flavin r 59.8 62 0.0013 26.9 7.6 111 92-228 58-175 (211)
215 PF05176 ATP-synt_10: ATP10 pr 58.9 45 0.00098 28.6 7.1 109 71-180 96-217 (252)
216 cd03041 GST_N_2GST_N GST_N fam 57.7 54 0.0012 22.0 6.2 52 105-165 3-57 (77)
217 PRK10853 putative reductase; P 56.1 19 0.0004 27.1 3.8 64 104-177 2-69 (118)
218 TIGR03143 AhpF_homolog putativ 55.6 39 0.00084 32.3 6.8 43 100-144 476-518 (555)
219 PRK12759 bifunctional gluaredo 55.3 21 0.00046 32.8 4.8 39 104-149 4-42 (410)
220 PRK10200 putative racemase; Pr 54.1 29 0.00062 29.2 5.1 43 118-163 60-103 (230)
221 cd03060 GST_N_Omega_like GST_N 54.0 28 0.0006 22.9 4.1 51 106-166 3-56 (71)
222 KOG4277 Uncharacterized conser 53.6 5.2 0.00011 35.4 0.5 34 101-134 44-77 (468)
223 PF06053 DUF929: Domain of unk 53.0 23 0.00051 30.4 4.3 32 99-130 57-88 (249)
224 PRK00311 panB 3-methyl-2-oxobu 52.9 97 0.0021 26.8 8.2 82 117-206 158-248 (264)
225 COG0821 gcpE 1-hydroxy-2-methy 52.7 1.1E+02 0.0024 27.6 8.5 77 126-206 42-123 (361)
226 TIGR00222 panB 3-methyl-2-oxob 51.9 1.1E+02 0.0023 26.6 8.3 83 116-206 156-247 (263)
227 PRK06184 hypothetical protein; 51.5 50 0.0011 30.9 6.7 79 69-177 385-463 (502)
228 PF09897 DUF2124: Uncharacteri 50.6 24 0.00053 27.7 3.7 61 101-166 81-141 (147)
229 cd00570 GST_N_family Glutathio 49.4 31 0.00067 21.5 3.7 53 106-167 3-58 (71)
230 cd03033 ArsC_15kD Arsenate Red 49.4 38 0.00082 25.2 4.5 64 104-177 2-69 (113)
231 PF13778 DUF4174: Domain of un 49.4 49 0.0011 24.8 5.2 49 91-141 3-51 (118)
232 PRK11869 2-oxoacid ferredoxin 47.7 23 0.0005 31.0 3.5 24 107-130 6-31 (280)
233 TIGR03765 ICE_PFL_4695 integra 47.2 85 0.0018 23.3 5.9 58 117-177 35-93 (105)
234 PRK10954 periplasmic protein d 46.9 26 0.00057 28.7 3.7 37 101-139 39-78 (207)
235 cd01427 HAD_like Haloacid deha 44.7 49 0.0011 23.6 4.6 39 118-156 25-63 (139)
236 PF10740 DUF2529: Protein of u 44.6 64 0.0014 26.1 5.4 56 73-140 60-115 (172)
237 PHA03075 glutaredoxin-like pro 44.0 33 0.00071 26.0 3.4 29 102-130 3-31 (123)
238 TIGR00035 asp_race aspartate r 43.5 52 0.0011 27.4 5.0 40 118-157 60-100 (229)
239 PF04278 Tic22: Tic22-like fam 42.6 46 0.001 28.9 4.7 66 73-147 72-141 (274)
240 PRK10026 arsenate reductase; P 42.1 72 0.0016 24.9 5.2 65 104-176 4-72 (141)
241 PF12710 HAD: haloacid dehalog 42.0 35 0.00075 26.8 3.6 40 124-163 96-135 (192)
242 PRK06183 mhpA 3-(3-hydroxyphen 41.5 1.1E+02 0.0024 28.9 7.4 91 69-177 410-500 (538)
243 PF11072 DUF2859: Protein of u 41.2 1.1E+02 0.0023 24.1 6.0 58 117-177 73-131 (142)
244 PF00875 DNA_photolyase: DNA p 40.9 55 0.0012 25.5 4.6 49 118-168 51-99 (165)
245 cd03034 ArsC_ArsC Arsenate Red 40.9 56 0.0012 24.0 4.4 65 105-177 2-70 (112)
246 cd02991 UAS_ETEA UAS family, E 40.9 94 0.002 23.1 5.6 62 99-166 16-86 (116)
247 PRK15317 alkyl hydroperoxide r 39.4 94 0.002 29.3 6.6 39 101-141 117-155 (517)
248 TIGR00612 ispG_gcpE 1-hydroxy- 38.1 1.7E+02 0.0037 26.4 7.5 80 124-206 38-121 (346)
249 PRK13738 conjugal transfer pil 37.7 85 0.0018 26.2 5.3 63 102-177 121-183 (209)
250 TIGR00067 glut_race glutamate 37.3 88 0.0019 26.7 5.5 58 103-163 26-90 (251)
251 PF00702 Hydrolase: haloacid d 36.3 71 0.0015 25.3 4.7 38 120-157 130-167 (215)
252 PRK00865 glutamate racemase; P 36.1 95 0.0021 26.5 5.6 68 101-172 31-104 (261)
253 KOG3414 Component of the U4/U6 35.9 2.1E+02 0.0045 22.2 6.7 43 101-144 24-66 (142)
254 COG1393 ArsC Arsenate reductas 35.6 44 0.00094 25.2 3.0 65 104-176 3-71 (117)
255 PF08821 CGGC: CGGC domain; I 35.5 1.1E+02 0.0023 22.7 5.0 48 87-141 26-73 (107)
256 cd01460 vWA_midasin VWA_Midasi 35.4 49 0.0011 28.7 3.7 19 126-144 187-205 (266)
257 PF01323 DSBA: DSBA-like thior 35.1 83 0.0018 24.7 4.8 40 104-143 2-41 (193)
258 cd03059 GST_N_SspA GST_N famil 34.6 42 0.00092 21.8 2.6 18 106-123 3-20 (73)
259 PF02114 Phosducin: Phosducin; 33.2 1.1E+02 0.0024 26.4 5.6 42 100-143 146-187 (265)
260 cd06557 KPHMT-like Ketopantoat 32.8 3.2E+02 0.0069 23.5 8.6 81 118-206 156-245 (254)
261 COG0796 MurI Glutamate racemas 32.7 1.3E+02 0.0028 26.2 5.7 57 101-157 31-93 (269)
262 TIGR01761 thiaz-red thiazoliny 32.6 43 0.00094 30.1 3.0 47 112-166 11-57 (343)
263 TIGR03365 Bsubt_queE 7-cyano-7 32.4 92 0.002 26.2 4.9 48 122-172 61-114 (238)
264 cd01450 vWFA_subfamily_ECM Von 32.2 1.4E+02 0.0031 22.2 5.6 48 101-152 104-153 (161)
265 PRK08132 FAD-dependent oxidore 31.9 1.2E+02 0.0027 28.6 6.1 88 69-177 426-513 (547)
266 TIGR01485 SPP_plant-cyano sucr 31.6 1.8E+02 0.0039 24.2 6.5 42 116-157 20-61 (249)
267 KOG1615 Phosphoserine phosphat 29.8 68 0.0015 26.8 3.4 39 120-158 91-129 (227)
268 TIGR03140 AhpF alkyl hydropero 29.6 1.7E+02 0.0036 27.6 6.5 40 100-141 117-156 (515)
269 PHA00649 hypothetical protein 29.4 44 0.00095 22.9 1.9 38 110-154 6-43 (83)
270 cd03025 DsbA_FrnE_like DsbA fa 29.4 61 0.0013 25.6 3.1 33 104-137 3-35 (193)
271 KOG0713 Molecular chaperone (D 28.8 18 0.00038 32.4 -0.2 33 140-175 49-83 (336)
272 PRK00366 ispG 4-hydroxy-3-meth 28.7 3.8E+02 0.0081 24.4 8.1 80 124-206 46-130 (360)
273 PF03960 ArsC: ArsC family; I 28.7 1.3E+02 0.0028 21.9 4.5 58 109-174 3-64 (110)
274 TIGR01488 HAD-SF-IB Haloacid D 28.0 1.1E+02 0.0023 23.6 4.3 38 120-157 76-113 (177)
275 TIGR02743 TraW type-F conjugat 27.8 1E+02 0.0022 25.6 4.2 53 116-177 133-185 (202)
276 KOG0913 Thiol-disulfide isomer 27.8 30 0.00065 29.5 1.0 37 101-138 41-77 (248)
277 TIGR01490 HAD-SF-IB-hyp1 HAD-s 27.3 1.5E+02 0.0033 23.5 5.2 39 119-157 89-127 (202)
278 cd03045 GST_N_Delta_Epsilon GS 26.8 1.1E+02 0.0023 19.9 3.5 53 106-166 3-59 (74)
279 cd05017 SIS_PGI_PMI_1 The memb 26.8 2.3E+02 0.0051 20.6 5.8 49 101-157 44-92 (119)
280 PRK05778 2-oxoglutarate ferred 26.7 80 0.0017 27.8 3.6 23 107-129 16-40 (301)
281 KOG0911 Glutaredoxin-related p 26.0 58 0.0013 27.5 2.4 42 100-143 17-58 (227)
282 PRK13600 putative ribosomal pr 25.8 2.4E+02 0.0053 19.9 6.3 56 122-179 18-77 (84)
283 TIGR01616 nitro_assoc nitrogen 25.8 1.5E+02 0.0033 22.5 4.6 63 104-176 3-69 (126)
284 cd03040 GST_N_mPGES2 GST_N fam 25.7 77 0.0017 20.9 2.7 49 106-165 4-54 (77)
285 cd02983 P5_C P5 family, C-term 25.7 3E+02 0.0064 20.8 7.1 66 100-166 21-91 (130)
286 COG5561 Predicted metal-bindin 25.5 51 0.0011 23.8 1.7 29 110-139 5-33 (101)
287 cd05013 SIS_RpiR RpiR-like pro 25.5 1.9E+02 0.004 21.0 5.1 46 101-152 61-106 (139)
288 PF13419 HAD_2: Haloacid dehal 25.4 1.1E+02 0.0023 23.1 3.8 36 120-155 80-115 (176)
289 COG5418 Predicted secreted pro 25.4 1.1E+02 0.0024 24.2 3.7 56 75-142 51-106 (164)
290 cd03055 GST_N_Omega GST_N fami 25.2 1.8E+02 0.0039 20.0 4.6 51 105-165 20-73 (89)
291 PRK09552 mtnX 2-hydroxy-3-keto 25.1 1.5E+02 0.0033 24.1 4.9 38 119-157 76-113 (219)
292 COG0552 FtsY Signal recognitio 24.7 4.4E+02 0.0096 23.8 7.8 68 101-175 139-216 (340)
293 PRK11867 2-oxoglutarate ferred 23.8 95 0.0021 27.1 3.5 19 111-129 19-39 (286)
294 PF07905 PucR: Purine cataboli 23.6 3.1E+02 0.0067 20.3 6.8 43 121-166 60-107 (123)
295 PLN02640 glucose-6-phosphate 1 23.6 1.9E+02 0.004 28.1 5.6 70 72-143 61-131 (573)
296 TIGR01662 HAD-SF-IIIA HAD-supe 23.6 1.6E+02 0.0035 21.6 4.4 39 119-157 27-73 (132)
297 cd03037 GST_N_GRX2 GST_N famil 23.6 2.1E+02 0.0046 18.4 5.4 17 107-123 4-20 (71)
298 cd01452 VWA_26S_proteasome_sub 23.3 2.1E+02 0.0045 23.4 5.2 49 102-154 109-161 (187)
299 TIGR00338 serB phosphoserine p 23.1 1.3E+02 0.0029 24.2 4.2 38 120-157 88-125 (219)
300 PRK04452 acetyl-CoA decarbonyl 22.9 88 0.0019 27.9 3.1 48 121-168 163-213 (319)
301 TIGR01689 EcbF-BcbF capsule bi 22.8 2.9E+02 0.0063 21.0 5.6 44 121-164 28-86 (126)
302 COG4469 CoiA Competence protei 22.3 43 0.00094 29.9 1.1 33 79-118 2-34 (342)
303 PF02966 DIM1: Mitosis protein 22.2 2.5E+02 0.0055 21.7 5.1 44 101-145 21-64 (133)
304 smart00084 NMU Neuromedin U. N 22.1 80 0.0017 17.2 1.6 13 219-231 12-24 (26)
305 COG3033 TnaA Tryptophanase [Am 22.0 5E+02 0.011 24.0 7.6 98 118-229 170-281 (471)
306 COG1794 RacX Aspartate racemas 22.0 2.2E+02 0.0047 24.2 5.1 56 119-177 61-119 (230)
307 PLN02424 ketopantoate hydroxym 21.8 5.9E+02 0.013 22.9 8.4 58 117-177 179-244 (332)
308 PLN02954 phosphoserine phospha 21.0 1.7E+02 0.0036 23.7 4.4 38 120-157 87-124 (224)
309 TIGR00381 cdhD CO dehydrogenas 21.0 1.3E+02 0.0029 27.5 3.9 47 121-167 228-277 (389)
310 TIGR01491 HAD-SF-IB-PSPlk HAD- 20.9 2.2E+02 0.0047 22.3 4.9 38 120-157 83-120 (201)
311 cd01473 vWA_CTRP CTRP for CS 20.7 1.3E+02 0.0028 24.3 3.5 24 122-145 128-151 (192)
312 COG0560 SerB Phosphoserine pho 20.7 1.6E+02 0.0034 24.4 4.1 39 119-157 79-117 (212)
313 PF01408 GFO_IDH_MocA: Oxidore 20.7 2.3E+02 0.005 20.2 4.7 32 132-166 24-55 (120)
314 PLN03098 LPA1 LOW PSII ACCUMUL 20.6 2.9E+02 0.0063 26.0 6.1 66 72-142 272-337 (453)
315 PF13743 Thioredoxin_5: Thiore 20.6 66 0.0014 25.7 1.8 43 107-150 3-45 (176)
316 TIGR01484 HAD-SF-IIB HAD-super 20.4 2E+02 0.0043 22.9 4.6 38 120-157 20-57 (204)
317 cd03061 GST_N_CLIC GST_N famil 20.4 1.3E+02 0.0028 21.5 3.1 50 110-169 20-72 (91)
No 1
>cd02970 PRX_like2 Peroxiredoxin (PRX)-like 2 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a CXXC motif, similar to TRX. The second cysteine in the motif corresponds to the peroxidatic cysteine of PRX, however, these proteins do not contain the other two residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. TRXs alter the redox state of target proteins by catalyzing the reduction of their disulfide bonds via the CXXC motif using reducing equivalents derived from either NADPH or ferredoxins.
Probab=99.91 E-value=7.3e-24 Score=166.07 Aligned_cols=137 Identities=36% Similarity=0.581 Sum_probs=112.3
Q ss_pred CcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHh--
Q 026909 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE-- 152 (231)
Q Consensus 75 ~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~-- 152 (231)
.+|+|++.|.+|+.++++++.++ +++||+|||++|||.|+.+++.|+++++++++.|+++|+|+.++.+.+.+|.+
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~~~--~~~vl~f~~~~~Cp~C~~~~~~l~~~~~~~~~~~v~vv~V~~~~~~~~~~~~~~~ 78 (149)
T cd02970 1 TAPDFELPDAGGETVTLSALLGE--GPVVVVFYRGFGCPFCREYLRALSKLLPELDALGVELVAVGPESPEKLEAFDKGK 78 (149)
T ss_pred CCCCccccCCCCCEEchHHHhcC--CCEEEEEECCCCChhHHHHHHHHHHHHHHHHhcCeEEEEEeCCCHHHHHHHHHhc
Confidence 37999999999999999998764 28999999999999999999999999999999999999999999988888887
Q ss_pred cCCCCCcceeecCcchHHHHhCCcccccceeeccChhhHhhHHHHHHHHHhhcccccCCCCCCCCcccccccEEEEecC
Q 026909 153 RLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRRRDVCLQREATIICSQR 231 (231)
Q Consensus 153 ~~~fp~~~vl~D~~~~~~~~~g~~~g~~~~~~~p~~~~v~~~~~~l~~~~k~~~~~~~~~~~~Gd~~~q~gG~~v~~~~ 231 (231)
.++|| +++|+++.++++||+......+...+. .+. + ...+......|+ ..|++|+||+|++
T Consensus 79 ~~~~p---~~~D~~~~~~~~~g~~~~~~~~~~~~~----------~~~---~-~~~~~~~~~~~~-~~~~p~~fvid~~ 139 (149)
T cd02970 79 FLPFP---VYADPDRKLYRALGLVRSLPWSNTPRA----------LWK---N-AAIGFRGNDEGD-GLQLPGVFVIGPD 139 (149)
T ss_pred CCCCe---EEECCchhHHHHcCceecCcHHHHHHH----------Hhh---C-cccccccCCCCc-ccccceEEEECCC
Confidence 47788 999999999999999765543332210 111 1 123345667788 8999999999863
No 2
>COG1225 Bcp Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=2.4e-22 Score=159.00 Aligned_cols=104 Identities=26% Similarity=0.435 Sum_probs=98.8
Q ss_pred CCCCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHH
Q 026909 68 FPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (231)
Q Consensus 68 ~~~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~ 147 (231)
..+++|+++|+|+|++.+|+.++|+|++++ ++||+||+..++|.|..|+.+|++.+++|++.|+.|++||.|++++.
T Consensus 2 ~~l~~G~~aPdF~Lp~~~g~~v~Lsd~~Gk---~VVLyFYPk~~TpgCT~Ea~~Frd~~~ef~~~~a~V~GIS~Ds~~~~ 78 (157)
T COG1225 2 MMLKVGDKAPDFELPDQDGETVSLSDLRGK---PVVLYFYPKDFTPGCTTEACDFRDLLEEFEKLGAVVLGISPDSPKSH 78 (157)
T ss_pred CcCCCCCcCCCeEeecCCCCEEehHHhcCC---cEEEEECCCCCCCcchHHHHHHHHHHHHHHhCCCEEEEEeCCCHHHH
Confidence 368899999999999999999999999987 89999999999999999999999999999999999999999999999
Q ss_pred HHHHhc--CCCCCcceeecCcchHHHHhCCcc
Q 026909 148 QILAER--LPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 148 ~~~~~~--~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
++|+++ ++|| +++|+++++.++||+..
T Consensus 79 ~~F~~k~~L~f~---LLSD~~~~v~~~ygv~~ 107 (157)
T COG1225 79 KKFAEKHGLTFP---LLSDEDGEVAEAYGVWG 107 (157)
T ss_pred HHHHHHhCCCce---eeECCcHHHHHHhCccc
Confidence 999994 7788 99999999999999943
No 3
>PF00578 AhpC-TSA: AhpC/TSA family; InterPro: IPR000866 Peroxiredoxins (Prxs) are a ubiquitous family of antioxidant enzymes that also control cytokine-induced peroxide levels which mediate signal transduction in mammalian cells. Prxs can be regulated by changes to phosphorylation, redox and possibly oligomerisation states. Prxs are divided into three classes: typical 2-Cys Prxs; atypical 2-Cys Prxs; and 1-Cys Prxs. All Prxs share the same basic catalytic mechanism, in which an active-site cysteine (the peroxidatic cysteine) is oxidised to a sulphenic acid by the peroxide substrate. The recycling of the sulphenic acid back to a thiol is what distinguishes the three enzyme classes. Using crystal structures, a detailed catalytic cycle has been derived for typical 2-Cys Prxs, including a model for the redox-regulated oligomeric state proposed to control enzyme activity []. Alkyl hydroperoxide reductase (AhpC) is responsible for directly reducing organic hyperoxides in its reduced dithiol form. Thiol specific antioxidant (TSA) is a physiologically important antioxidant which constitutes an enzymatic defence against sulphur-containing radicals. This family contains AhpC and TSA, as well as related proteins.; GO: 0016209 antioxidant activity, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1QMV_A 1PRX_B 3HJP_C 3HA9_A 2V41_G 2V32_C 2V2G_C 3LWA_A 3IA1_B 1ZYE_G ....
Probab=99.82 E-value=1.1e-19 Score=138.09 Aligned_cols=100 Identities=28% Similarity=0.538 Sum_probs=92.5
Q ss_pred CCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHH
Q 026909 72 VGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILA 151 (231)
Q Consensus 72 vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~ 151 (231)
+|+++|+|+++|.+|+.++++++.++ +++|+||+..|||.|..++++|+++++++++.|+++++|+.++.+.+++|.
T Consensus 1 vG~~~P~f~l~~~~g~~~~l~~l~gk---~~vl~f~~~~~c~~c~~~l~~l~~~~~~~~~~~~~vi~is~d~~~~~~~~~ 77 (124)
T PF00578_consen 1 VGDKAPDFTLTDSDGKTVSLSDLKGK---PVVLFFWPTAWCPFCQAELPELNELYKKYKDKGVQVIGISTDDPEEIKQFL 77 (124)
T ss_dssp TTSBGGCEEEETTTSEEEEGGGGTTS---EEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTEEEEEEESSSHHHHHHHH
T ss_pred CcCCCCCcEeECCCCCEEEHHHHCCC---cEEEEEeCccCccccccchhHHHHHhhhhccceEEeeecccccccchhhhh
Confidence 69999999999999999999999654 788888777799999999999999999999999999999999999999999
Q ss_pred h--cCCCCCcceeecCcchHHHHhCCcc
Q 026909 152 E--RLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 152 ~--~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
+ +.+|| +++|+++.+.+.||+..
T Consensus 78 ~~~~~~~~---~~~D~~~~~~~~~~~~~ 102 (124)
T PF00578_consen 78 EEYGLPFP---VLSDPDGELAKAFGIED 102 (124)
T ss_dssp HHHTCSSE---EEEETTSHHHHHTTCEE
T ss_pred hhhccccc---cccCcchHHHHHcCCcc
Confidence 8 47888 99999999999999974
No 4
>cd03018 PRX_AhpE_like Peroxiredoxin (PRX) family, AhpE-like subfamily; composed of proteins similar to Mycobacterium tuberculosis AhpE. AhpE is described as a 1-cys PRX because of the absence of a resolving cysteine. The structure and sequence of AhpE, however, show greater similarity to 2-cys PRXs than 1-cys PRXs. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. The first step of catalysis is the nucleophilic attack by the peroxidatic cysteine on the peroxide leading to the formation of a cysteine sulfenic acid intermediate. The absence of a resolving cysteine suggests that functional AhpE is regenerated by an external reductant. The solution behavior and crystal structure of AhpE show that it forms dimers and octamers.
Probab=99.81 E-value=2.3e-19 Score=140.98 Aligned_cols=103 Identities=26% Similarity=0.437 Sum_probs=94.2
Q ss_pred CCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHH
Q 026909 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQI 149 (231)
Q Consensus 70 ~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~ 149 (231)
+++|+.+|+|.+.|.+|+.++++++.+++ ++||+|||+.||+.|..++++|+++++++.+.|+++|+|+.++++.+++
T Consensus 1 ~~~G~~~p~~~l~~~~g~~v~l~~~~g~k--~~vl~f~~~~~c~~C~~~~~~l~~~~~~~~~~~v~vi~vs~d~~~~~~~ 78 (149)
T cd03018 1 LEVGDKAPDFELPDQNGQEVRLSEFRGRK--PVVLVFFPLAFTPVCTKELCALRDSLELFEAAGAEVLGISVDSPFSLRA 78 (149)
T ss_pred CCCCCcCCCcEecCCCCCEEeHHHHcCCC--eEEEEEeCCCCCccHHHHHHHHHHHHHHHHhCCCEEEEecCCCHHHHHH
Confidence 47899999999999999999999998731 7888999999999999999999999999999999999999999999999
Q ss_pred HHhc--CCCCCcceeecCc--chHHHHhCCcc
Q 026909 150 LAER--LPFPMDCLYADPD--RKVYNLLGLYH 177 (231)
Q Consensus 150 ~~~~--~~fp~~~vl~D~~--~~~~~~~g~~~ 177 (231)
|.++ ++|| +++|++ +++++.||+..
T Consensus 79 ~~~~~~~~~~---~~~D~~~~~~~~~~~g~~~ 107 (149)
T cd03018 79 WAEENGLTFP---LLSDFWPHGEVAKAYGVFD 107 (149)
T ss_pred HHHhcCCCce---EecCCCchhHHHHHhCCcc
Confidence 9984 7777 899987 99999999864
No 5
>PRK13599 putative peroxiredoxin; Provisional
Probab=99.80 E-value=4.8e-19 Score=148.38 Aligned_cols=101 Identities=23% Similarity=0.251 Sum_probs=92.1
Q ss_pred CCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHH
Q 026909 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQI 149 (231)
Q Consensus 70 ~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~ 149 (231)
..+|+.+|+|++.+.+|+.+.++++.++ ++||+|||+.|||.|..|++.|++++++|++.|++||+||.|+.+...+
T Consensus 2 ~~~Gd~aPdF~l~t~~G~~~~~~~~~Gk---~vVL~~~pa~~tpvCt~El~~l~~~~~~f~~~gv~vigIS~D~~~~~~~ 78 (215)
T PRK13599 2 KLLGEKFPSMEVVTTQGVKRLPEDYAGK---WFVLFSHPADFTPVCTTEFVEFARKANDFKELNTELIGLSVDQVFSHIK 78 (215)
T ss_pred CCCCCCCCCCEeECCCCcEecHHHHCCC---eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHH
Confidence 3689999999999999998877888664 7889999999999999999999999999999999999999999988888
Q ss_pred HHh--------cCCCCCcceeecCcchHHHHhCCc
Q 026909 150 LAE--------RLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 150 ~~~--------~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
|.+ +++|| +++|+++++.+.||+.
T Consensus 79 w~~~i~~~~~~~i~fP---il~D~~~~va~~yg~~ 110 (215)
T PRK13599 79 WVEWIKDNTNIAIPFP---VIADDLGKVSNQLGMI 110 (215)
T ss_pred HHHhHHHhcCCCCcee---EEECCCchHHHHcCCC
Confidence 765 47899 9999999999999984
No 6
>PRK13190 putative peroxiredoxin; Provisional
Probab=99.80 E-value=4e-19 Score=147.56 Aligned_cols=101 Identities=23% Similarity=0.347 Sum_probs=90.6
Q ss_pred CCCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHH
Q 026909 69 PANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (231)
Q Consensus 69 ~~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~ 148 (231)
++.+|+.+|+|++.+..| .++++++.++ ++||+|||+.|||.|..|+++|++.+++|++.|+++|+||.|+.+..+
T Consensus 1 ~~~vG~~aP~F~~~~~~g-~v~l~d~~gk---~vvL~~~p~~~cp~C~~El~~l~~~~~~f~~~~~~vi~vS~D~~~~~~ 76 (202)
T PRK13190 1 PVKLGQKAPDFTVNTTKG-PIDLSKYKGK---WVLLFSHPADFTPVCTTEFIAFSRRYEDFKKLGVELVGLSVDSIYSHI 76 (202)
T ss_pred CCCCCCCCCCcEEecCCC-cEeHHHhCCC---EEEEEEEcCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHH
Confidence 367899999999999887 6999999664 788889999999999999999999999999999999999999998877
Q ss_pred HHHh----c----CCCCCcceeecCcchHHHHhCCc
Q 026909 149 ILAE----R----LPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 149 ~~~~----~----~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
+|.+ + ++|| +++|++++++++||+.
T Consensus 77 ~w~~~~~~~~g~~~~fP---ll~D~~~~ia~~ygv~ 109 (202)
T PRK13190 77 AWLRDIEERFGIKIPFP---VIADIDKELAREYNLI 109 (202)
T ss_pred HHHHhHHHhcCCCceEE---EEECCChHHHHHcCCc
Confidence 7754 2 4689 9999999999999994
No 7
>cd03013 PRX5_like Peroxiredoxin (PRX) family, PRX5-like subfamily; members are similar to the human protein, PRX5, a homodimeric TRX peroxidase, widely expressed in tissues and found cellularly in mitochondria, peroxisomes and the cytosol. The cellular location of PRX5 suggests that it may have an important antioxidant role in organelles that are major sources of reactive oxygen species (ROS), as well as a role in the control of signal transduction. PRX5 has been shown to reduce hydrogen peroxide, alkyl hydroperoxides and peroxynitrite. As with all other PRXs, the N-terminal peroxidatic cysteine of PRX5 is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Human PRX5 is able to resolve this intermediate by forming an intramolecular disulfide bond with its C-terminal cysteine (the resolving cysteine), which can then be reduced by TRX, just like an atypical 2-cys PRX. This resolving cysteine, however, is not conserved in other members of the subfamily. In such cases
Probab=99.79 E-value=4.7e-19 Score=141.32 Aligned_cols=100 Identities=23% Similarity=0.316 Sum_probs=91.8
Q ss_pred CCCCcCCeEEECCC---CCeEecccc-ccCCCCcEEEEEecCCCCcchHHH-HHHHHHHHHHhhhcCc-EEEEEeCCCHH
Q 026909 72 VGDLLGDFSIFTAA---GEPVLFKDL-WDQNEGVAVVALLRHFGCPCCWEL-ASALKESKARFDSAGV-KLIAVGVGTPN 145 (231)
Q Consensus 72 vG~~ap~f~l~d~~---G~~v~l~dl-~~~~~g~~vL~f~r~~~Cp~C~~~-l~~L~~~~~~l~~~gv-~lv~Is~~~~~ 145 (231)
+|+++|+|++.+.+ |+.++|+++ .++ ++||+|||+.|||.|..+ ++.|++.+++|++.|+ .|++||.|+++
T Consensus 1 vG~~aPdF~l~~~~~~~g~~v~L~~~~~gk---~vvl~fyP~~~tp~Ct~e~~~~~~~~~~~f~~~g~~~V~~iS~D~~~ 77 (155)
T cd03013 1 VGDKLPNVTLFEYVPGPPNPVNLSELFKGK---KVVIFGVPGAFTPTCSAQHLPGYVENADELKAKGVDEVICVSVNDPF 77 (155)
T ss_pred CCCcCCCeEeeeeccCCCceeeHHHHhCCC---cEEEEEeCCCCCCCCchhHHHHHHHhHHHHHHCCCCEEEEEECCCHH
Confidence 68999999999975 999999995 543 899999999999999998 9999999999999999 69999999999
Q ss_pred HHHHHHhc--C--CCCCcceeecCcchHHHHhCCcc
Q 026909 146 KAQILAER--L--PFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 146 ~~~~~~~~--~--~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
..++|+++ + +|| +++|+++++.++||+..
T Consensus 78 ~~~~~~~~~~~~~~f~---lLsD~~~~~~~~ygv~~ 110 (155)
T cd03013 78 VMKAWGKALGAKDKIR---FLADGNGEFTKALGLTL 110 (155)
T ss_pred HHHHHHHhhCCCCcEE---EEECCCHHHHHHcCCCc
Confidence 99999984 4 688 99999999999999953
No 8
>TIGR03137 AhpC peroxiredoxin. This gene contains two invariant cysteine residues, one near the N-terminus and one near the C-terminus, each followed immediately by a proline residue.
Probab=99.79 E-value=8.7e-19 Score=143.83 Aligned_cols=100 Identities=17% Similarity=0.222 Sum_probs=90.4
Q ss_pred CCCCCcCCeEEEC-CCCC--eEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHH
Q 026909 71 NVGDLLGDFSIFT-AAGE--PVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (231)
Q Consensus 71 ~vG~~ap~f~l~d-~~G~--~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~ 147 (231)
.+|+.+|+|++.+ .+|+ .++++++.|+ ++||+|||+.|||.|+.++++|++.+++|++.|+++|+|+.|+.+..
T Consensus 3 ~~G~~aP~f~l~~~~~g~~~~~sl~d~~Gk---~vvl~F~p~~~cp~C~~el~~l~~~~~~~~~~gv~vi~VS~D~~~~~ 79 (187)
T TIGR03137 3 LINTEIKPFKATAYHNGEFVEVTDEDVKGK---WSVFFFYPADFTFVCPTELEDLADKYAELKKLGVEVYSVSTDTHFVH 79 (187)
T ss_pred ccCCcCCCcEeeeccCCceeEecHHHHCCC---EEEEEEECCCcCCcCHHHHHHHHHHHHHHHhcCCcEEEEeCCCHHHH
Confidence 6799999999998 5776 6888899765 78888888999999999999999999999999999999999999888
Q ss_pred HHHHh------cCCCCCcceeecCcchHHHHhCCc
Q 026909 148 QILAE------RLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 148 ~~~~~------~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
++|.+ +++|| +++|+++++.+.||+.
T Consensus 80 ~~~~~~~~~~~~l~fp---llsD~~~~~a~~~gv~ 111 (187)
T TIGR03137 80 KAWHDTSEAIGKITYP---MLGDPTGVLTRNFGVL 111 (187)
T ss_pred HHHHhhhhhccCccee---EEECCccHHHHHhCCc
Confidence 88875 37788 9999999999999985
No 9
>PRK13191 putative peroxiredoxin; Provisional
Probab=99.78 E-value=1.4e-18 Score=145.64 Aligned_cols=102 Identities=20% Similarity=0.266 Sum_probs=90.7
Q ss_pred CCCCCCCCcCCeEEECCCCCeEeccc-cccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH
Q 026909 68 FPANVGDLLGDFSIFTAAGEPVLFKD-LWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (231)
Q Consensus 68 ~~~~vG~~ap~f~l~d~~G~~v~l~d-l~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~ 146 (231)
.++.+|+.+|+|++.+.+|+ +.+.+ +.++ ++||+|||+.|||.|..|+++|++.+++|++.|++|++||.|+...
T Consensus 5 ~~~~iG~~aPdF~l~~~~G~-~~l~~~~~GK---~vvLff~pa~ftpvC~tEl~~l~~~~~ef~~~g~~VigvS~Ds~~~ 80 (215)
T PRK13191 5 RIPLIGEKFPEMEVITTHGK-IKLPDDYKGR---WFVLFSHPGDFTPVCTTEFYSFAKKYEEFKKLNTELIGLSVDSNIS 80 (215)
T ss_pred ccccCCCcCCCCEeecCCCC-EEcHHHhCCC---cEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEECCCHHH
Confidence 45679999999999999986 56645 6554 7888999999999999999999999999999999999999999998
Q ss_pred HHHHHh--------cCCCCCcceeecCcchHHHHhCCc
Q 026909 147 AQILAE--------RLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 147 ~~~~~~--------~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
.++|.+ +++|| +++|+++++.++||+.
T Consensus 81 h~aw~~~~~~~~~~~i~fP---llsD~~~~ia~~ygv~ 115 (215)
T PRK13191 81 HIEWVMWIEKNLKVEVPFP---IIADPMGNVAKRLGMI 115 (215)
T ss_pred HHHHHhhHHHhcCCCCceE---EEECCchHHHHHcCCc
Confidence 888864 37799 9999999999999985
No 10
>cd03016 PRX_1cys Peroxiredoxin (PRX) family, 1-cys PRX subfamily; composed of PRXs containing only one conserved cysteine, which serves as the peroxidatic cysteine. They are homodimeric thiol-specific antioxidant (TSA) proteins that confer a protective role in cells by reducing and detoxifying hydrogen peroxide, peroxynitrite, and organic hydroperoxides. As with all other PRXs, a cysteine sulfenic acid intermediate is formed upon reaction of 1-cys PRX with its substrates. Having no resolving cysteine, the oxidized enzyme is resolved by an external small-molecule or protein reductant such as thioredoxin or glutaredoxin. Similar to typical 2-cys PRX, 1-cys PRX forms a functional dimeric unit with a B-type interface, as well as a decameric structure which is stabilized in the reduced form of the enzyme. Other oligomeric forms, tetramers and hexamers, have also been reported. Mammalian 1-cys PRX is localized cellularly in the cytosol and is expressed at high levels in brain, eye, testes an
Probab=99.78 E-value=1.4e-18 Score=144.48 Aligned_cols=99 Identities=30% Similarity=0.478 Sum_probs=90.0
Q ss_pred CCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHH
Q 026909 72 VGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILA 151 (231)
Q Consensus 72 vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~ 151 (231)
+|+.+|+|++.+.+| .++++++.+++ ++||+|||+.|||.|..++++|++++++|++.|++|++|+.|+.+..++|.
T Consensus 1 vG~~aP~F~~~~~~g-~~~l~d~~g~k--~vvlf~~pa~~cp~C~~el~~l~~~~~~f~~~gv~vigvS~D~~~~~~~~~ 77 (203)
T cd03016 1 LGDTAPNFEADTTHG-PIKFHDYLGDS--WGILFSHPADFTPVCTTELGAFAKLAPEFKKRNVKLIGLSVDSVESHIKWI 77 (203)
T ss_pred CcCCCCCeEEecCCC-cEeHHHHcCCC--EEEEEEecCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHHHHHHH
Confidence 589999999999887 58999997742 788999999999999999999999999999999999999999998888776
Q ss_pred h--------cCCCCCcceeecCcchHHHHhCCc
Q 026909 152 E--------RLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 152 ~--------~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
+ +++|| +++|+++.++++||+.
T Consensus 78 ~~i~~~~~~~~~fp---il~D~~~~ia~~yg~~ 107 (203)
T cd03016 78 EDIEEYTGVEIPFP---IIADPDREVAKLLGMI 107 (203)
T ss_pred hhHHHhcCCCCcee---EEECchHHHHHHcCCc
Confidence 5 47788 9999999999999986
No 11
>PRK09437 bcp thioredoxin-dependent thiol peroxidase; Reviewed
Probab=99.78 E-value=3.5e-18 Score=135.48 Aligned_cols=102 Identities=28% Similarity=0.485 Sum_probs=92.6
Q ss_pred CCCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHH
Q 026909 69 PANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (231)
Q Consensus 69 ~~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~ 148 (231)
.+++|+.+|+|++.|.+|+.++++++.++ ++||+||+..|||.|+.+++.|.+.++++++.|+++|+|+.++.+.++
T Consensus 3 ~~~~g~~~p~f~l~~~~G~~~~l~~~~gk---~~ll~f~~~~~~p~C~~~~~~l~~~~~~~~~~~v~vi~Is~d~~~~~~ 79 (154)
T PRK09437 3 PLKAGDIAPKFSLPDQDGEQVSLTDFQGQ---RVLVYFYPKAMTPGCTVQACGLRDNMDELKKAGVVVLGISTDKPEKLS 79 (154)
T ss_pred cCCCCCcCCCcEeeCCCCCEEeHHHhCCC---CEEEEEECCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHH
Confidence 57889999999999999999999999764 677777767799999999999999999999999999999999999999
Q ss_pred HHHhc--CCCCCcceeecCcchHHHHhCCc
Q 026909 149 ILAER--LPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 149 ~~~~~--~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
+|.++ ++|| +++|+++.+.++||+.
T Consensus 80 ~~~~~~~~~~~---~l~D~~~~~~~~~gv~ 106 (154)
T PRK09437 80 RFAEKELLNFT---LLSDEDHQVAEQFGVW 106 (154)
T ss_pred HHHHHhCCCCe---EEECCCchHHHHhCCC
Confidence 99984 6777 8999999999999984
No 12
>cd03015 PRX_Typ2cys Peroxiredoxin (PRX) family, Typical 2-Cys PRX subfamily; PRXs are thiol-specific antioxidant (TSA) proteins, which confer a protective role in cells through its peroxidase activity by reducing hydrogen peroxide, peroxynitrite, and organic hydroperoxides. The functional unit of typical 2-cys PRX is a homodimer. A unique intermolecular redox-active disulfide center is utilized for its activity. Upon reaction with peroxides, its peroxidatic cysteine is oxidized into a sulfenic acid intermediate which is resolved by bonding with the resolving cysteine from the other subunit of the homodimer. This intermolecular disulfide bond is then reduced by thioredoxin, tryparedoxin or AhpF. Typical 2-cys PRXs, like 1-cys PRXs, form decamers which are stabilized by reduction of the active site cysteine. Typical 2-cys PRX interacts through beta strands at one edge of the monomer (B-type interface) to form the functional homodimer, and uses an A-type interface (similar to the dimeric
Probab=99.77 E-value=3.8e-18 Score=138.14 Aligned_cols=99 Identities=18% Similarity=0.238 Sum_probs=89.2
Q ss_pred CCCCcCCeEEECCCC----CeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHH
Q 026909 72 VGDLLGDFSIFTAAG----EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (231)
Q Consensus 72 vG~~ap~f~l~d~~G----~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~ 147 (231)
+|+.+|+|++.+.+| +.++++++.++ ++||+||++.|||.|..+++.|++++++|.+.|+.+++|+.++.+..
T Consensus 1 vG~~aP~f~~~~~~g~~~~~~~~l~~~~Gk---~vvl~F~~~~~c~~C~~~l~~l~~~~~~~~~~~v~vv~Is~d~~~~~ 77 (173)
T cd03015 1 VGKKAPDFKATAVVPNGEFKEISLSDYKGK---WVVLFFYPLDFTFVCPTEIIAFSDRYEEFKKLNAEVLGVSTDSHFSH 77 (173)
T ss_pred CCCcCCCCEeecccCCCCceEEehHHhCCC---EEEEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEecCCHHHH
Confidence 689999999999877 79999999765 78888888999999999999999999999999999999999988777
Q ss_pred HHHHhc---------CCCCCcceeecCcchHHHHhCCc
Q 026909 148 QILAER---------LPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 148 ~~~~~~---------~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
++|.+. ++|| +++|+++++++.||+.
T Consensus 78 ~~~~~~~~~~~~~~~~~f~---~l~D~~~~~~~~~gv~ 112 (173)
T cd03015 78 LAWRNTPRKEGGLGKINFP---LLADPKKKISRDYGVL 112 (173)
T ss_pred HHHHHhhhhhCCccCccee---EEECCchhHHHHhCCc
Confidence 777652 6788 9999999999999985
No 13
>PTZ00137 2-Cys peroxiredoxin; Provisional
Probab=99.77 E-value=2.9e-18 Score=146.95 Aligned_cols=106 Identities=23% Similarity=0.311 Sum_probs=93.4
Q ss_pred CCCCCCCCCcCCeEEEC-CCC--CeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 67 EFPANVGDLLGDFSIFT-AAG--EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 67 ~~~~~vG~~ap~f~l~d-~~G--~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
..++.+|+.+|+|++.+ .+| +.++++++.+++ ++||+|||+.|||.|..|++.|++.+++|++.|++|++||.|+
T Consensus 65 ~~~~~vGd~aPdF~l~~~~~g~~~~vsLsd~~kgk--~vVL~FyPa~ftpvCt~El~~l~~~~~ef~~~gv~VigIS~Ds 142 (261)
T PTZ00137 65 VTSSLVGKLMPSFKGTALLNDDLVQFNSSDYFKDS--YGLLVFYPLDFTFVCPSELLGFSERLKEFEERGVKVLGVSVDS 142 (261)
T ss_pred cccccCCCCCCCCEeecccCCCceEEeHHHHcCCC--eEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCC
Confidence 45678999999999987 455 468999984332 8999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHh---------cCCCCCcceeecCcchHHHHhCCcc
Q 026909 144 PNKAQILAE---------RLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 144 ~~~~~~~~~---------~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
++..++|.+ +++|| +++|+++++.++||+..
T Consensus 143 ~~~h~aw~~~~~~~~g~~~l~fP---lLsD~~~~iakayGv~~ 182 (261)
T PTZ00137 143 PFSHKAWKELDVRQGGVSPLKFP---LFSDISREVSKSFGLLR 182 (261)
T ss_pred HHHHHHHHhhhhhhccccCcceE---EEEcCChHHHHHcCCCC
Confidence 988888875 47799 99999999999999953
No 14
>PRK10382 alkyl hydroperoxide reductase subunit C; Provisional
Probab=99.77 E-value=3.6e-18 Score=140.13 Aligned_cols=102 Identities=12% Similarity=0.070 Sum_probs=91.9
Q ss_pred CCCCCCCcCCeEEEC---CCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 69 PANVGDLLGDFSIFT---AAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 69 ~~~vG~~ap~f~l~d---~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
++.+|+++|+|++.. .+.+.++++++.++ ++||+||++.|||.|..|++.|++.+++|++.|+++++||.|+++
T Consensus 1 ~~~~~~~~p~f~~~~~~~g~~~~v~L~d~~Gk---~vvL~F~P~~~~p~C~~el~~l~~~~~~f~~~g~~vigIS~D~~~ 77 (187)
T PRK10382 1 MSLINTKIKPFKNQAFKNGEFIEVTEKDTEGR---WSVFFFYPADFTFVCPTELGDVADHYEELQKLGVDVYSVSTDTHF 77 (187)
T ss_pred CCccCCcCCCcEEEEEeCCcceEEEHHHhCCC---eEEEEEECCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEeCCCHH
Confidence 357899999999875 34567788899876 899999999999999999999999999999999999999999999
Q ss_pred HHHHHHh------cCCCCCcceeecCcchHHHHhCCc
Q 026909 146 KAQILAE------RLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 146 ~~~~~~~------~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
..++|.+ +++|| +++|+++++.++||+.
T Consensus 78 ~~~a~~~~~~~~~~l~fp---llsD~~~~ia~~ygv~ 111 (187)
T PRK10382 78 THKAWHSSSETIAKIKYA---MIGDPTGALTRNFDNM 111 (187)
T ss_pred HHHHHHHhhccccCCcee---EEEcCchHHHHHcCCC
Confidence 9999985 46889 9999999999999984
No 15
>cd03017 PRX_BCP Peroxiredoxin (PRX) family, Bacterioferritin comigratory protein (BCP) subfamily; composed of thioredoxin-dependent thiol peroxidases, widely expressed in pathogenic bacteria, that protect cells against toxicity from reactive oxygen species by reducing and detoxifying hydroperoxides. The protein was named BCP based on its electrophoretic mobility before its function was known. BCP shows substrate selectivity toward fatty acid hydroperoxides rather than hydrogen peroxide or alkyl hydroperoxides. BCP contains the peroxidatic cysteine but appears not to possess a resolving cysteine (some sequences, not all, contain a second cysteine but its role is still unknown). Unlike other PRXs, BCP exists as a monomer. The plant homolog of BCP is PRX Q, which is expressed only in leaves and is cellularly localized in the chloroplasts and the guard cells of stomata. Also included in this subfamily is the fungal nuclear protein, Dot5p (for disrupter of telomere silencing protein 5), w
Probab=99.76 E-value=4.2e-18 Score=132.31 Aligned_cols=98 Identities=29% Similarity=0.476 Sum_probs=89.6
Q ss_pred CCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhc
Q 026909 74 DLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAER 153 (231)
Q Consensus 74 ~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~ 153 (231)
+.+|+|++.|.+|+.++++++.++ +++|+||++.|||.|..+++.|.+.++++.+.|+.+|+|+.++++.+++|.++
T Consensus 1 ~~~p~f~l~~~~g~~~~l~~~~gk---~~ll~f~~~~~cp~C~~~~~~l~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~ 77 (140)
T cd03017 1 DKAPDFTLPDQDGETVSLSDLRGK---PVVLYFYPKDDTPGCTKEACDFRDLYEEFKALGAVVIGVSPDSVESHAKFAEK 77 (140)
T ss_pred CCCCCccccCCCCCEEeHHHhCCC---cEEEEEeCCCCCCchHHHHHHHHHHHHHHHHCCCEEEEEcCCCHHHHHHHHHH
Confidence 468999999999999999999765 77777777899999999999999999999999999999999999999999984
Q ss_pred --CCCCCcceeecCcchHHHHhCCcc
Q 026909 154 --LPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 154 --~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
++|| +++|++++++++||+..
T Consensus 78 ~~~~~~---~l~D~~~~~~~~~gv~~ 100 (140)
T cd03017 78 YGLPFP---LLSDPDGKLAKAYGVWG 100 (140)
T ss_pred hCCCce---EEECCccHHHHHhCCcc
Confidence 7788 99999999999999864
No 16
>PRK13189 peroxiredoxin; Provisional
Probab=99.76 E-value=4.8e-18 Score=143.03 Aligned_cols=102 Identities=20% Similarity=0.239 Sum_probs=90.9
Q ss_pred CCCCCCCCcCCeEEECCCCCeEecccc-ccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH
Q 026909 68 FPANVGDLLGDFSIFTAAGEPVLFKDL-WDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (231)
Q Consensus 68 ~~~~vG~~ap~f~l~d~~G~~v~l~dl-~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~ 146 (231)
.++.+|+.+|+|++.+.+|+ +++.++ .++ ++||+|||+.|||.|..|+++|++.+++|++.|++|++||.|+.+.
T Consensus 7 ~~~~vG~~aPdF~~~~~~g~-~~l~d~~~Gk---~vvL~f~pa~fcpvC~tEl~~l~~~~~ef~~~~v~VigvS~D~~~~ 82 (222)
T PRK13189 7 RMPLIGDKFPEFEVKTTHGP-IKLPDDYKGK---WFVLFSHPADFTPVCTTEFVAFQKRYDEFRELNTELIGLSIDQVFS 82 (222)
T ss_pred ccccCCCcCCCcEeEcCCCC-EeeHHHhCCC---eEEEEEeCCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEECCCHHH
Confidence 35679999999999998885 778775 443 7899999999999999999999999999999999999999999988
Q ss_pred HHHHHh--------cCCCCCcceeecCcchHHHHhCCc
Q 026909 147 AQILAE--------RLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 147 ~~~~~~--------~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
.++|.+ +++|| +++|+++++.++||+.
T Consensus 83 h~aw~~~~~~~~g~~i~fP---llsD~~~~ia~~ygv~ 117 (222)
T PRK13189 83 HIKWVEWIKEKLGVEIEFP---IIADDRGEIAKKLGMI 117 (222)
T ss_pred HHHHHHhHHHhcCcCccee---EEEcCccHHHHHhCCC
Confidence 888865 26788 9999999999999986
No 17
>cd03014 PRX_Atyp2cys Peroxiredoxin (PRX) family, Atypical 2-cys PRX subfamily; composed of PRXs containing peroxidatic and resolving cysteines, similar to the homodimeric thiol specific antioxidant (TSA) protein also known as TRX-dependent thiol peroxidase (Tpx). Tpx is a bacterial periplasmic peroxidase which differs from other PRXs in that it shows substrate specificity toward alkyl hydroperoxides over hydrogen peroxide. As with all other PRXs, the peroxidatic cysteine (N-terminal) of Tpx is oxidized into a sulfenic acid intermediate upon reaction with peroxides. Tpx is able to resolve this intermediate by forming an intramolecular disulfide bond with a conserved C-terminal cysteine (the resolving cysteine), which can then be reduced by thioredoxin. This differs from the typical 2-cys PRX which resolves the oxidized cysteine by forming an intermolecular disulfide bond with the resolving cysteine from the other subunit of the homodimer. Atypical 2-cys PRX homodimers have a loop-based
Probab=99.75 E-value=1.3e-17 Score=130.48 Aligned_cols=99 Identities=17% Similarity=0.283 Sum_probs=87.8
Q ss_pred CCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHH
Q 026909 71 NVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL 150 (231)
Q Consensus 71 ~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~ 150 (231)
++|+.+|+|++.|.+|+.++++++.++ ++||+||+..|||.|+.+++.|.+++++++ |+.+|+|+.++.+.+++|
T Consensus 1 ~~G~~aP~f~l~~~~g~~~~l~~~~gk---~vvl~f~~~~~c~~C~~e~~~l~~~~~~~~--~~~vi~Is~d~~~~~~~~ 75 (143)
T cd03014 1 KVGDKAPDFTLVTSDLSEVSLADFAGK---VKVISVFPSIDTPVCATQTKRFNKEAAKLD--NTVVLTISADLPFAQKRW 75 (143)
T ss_pred CCCCCCCCcEEECCCCcEEeHHHhCCC---eEEEEEEcCCCCCcCHHHHHHHHHHHHhcC--CCEEEEEECCCHHHHHHH
Confidence 479999999999999999999999765 778888877779999999999999999983 899999999999989999
Q ss_pred HhcC---CCCCcceeecCc-chHHHHhCCcc
Q 026909 151 AERL---PFPMDCLYADPD-RKVYNLLGLYH 177 (231)
Q Consensus 151 ~~~~---~fp~~~vl~D~~-~~~~~~~g~~~ 177 (231)
.+.. +|| +++|+. +++.++||+..
T Consensus 76 ~~~~~~~~~~---~l~D~~~~~~~~~~gv~~ 103 (143)
T cd03014 76 CGAEGVDNVT---TLSDFRDHSFGKAYGVLI 103 (143)
T ss_pred HHhcCCCCce---EeecCcccHHHHHhCCee
Confidence 9853 577 999996 99999999963
No 18
>PRK00522 tpx lipid hydroperoxide peroxidase; Provisional
Probab=99.74 E-value=2.2e-17 Score=133.14 Aligned_cols=103 Identities=15% Similarity=0.205 Sum_probs=87.5
Q ss_pred CCCCCCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 66 TEFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 66 ~~~~~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
....+.+|+.+|+|++.|.+|+.++++++.++ ++||.||+..|||.|..+++.|++.++++. |+++|+|+.|+++
T Consensus 14 ~~~~~~~G~~~P~f~l~~~~g~~v~l~~~~Gk---~vvl~f~~s~~cp~C~~e~~~l~~~~~~~~--~~~vv~vs~D~~~ 88 (167)
T PRK00522 14 AGSLPQVGDKAPDFTLVANDLSDVSLADFAGK---RKVLNIFPSIDTGVCATSVRKFNQEAAELD--NTVVLCISADLPF 88 (167)
T ss_pred eCCCCCCCCCCCCeEEEcCCCcEEehHHhCCC---EEEEEEEcCCCCCccHHHHHHHHHHHHHcC--CcEEEEEeCCCHH
Confidence 35567899999999999999999999999654 566666655559999999999999999983 8999999999999
Q ss_pred HHHHHHhcCC---CCCcceeec-CcchHHHHhCCc
Q 026909 146 KAQILAERLP---FPMDCLYAD-PDRKVYNLLGLY 176 (231)
Q Consensus 146 ~~~~~~~~~~---fp~~~vl~D-~~~~~~~~~g~~ 176 (231)
.+++|.+..+ |+ +++| +++.+.++||+.
T Consensus 89 ~~~~f~~~~~~~~~~---~lsD~~~~~~~~~~gv~ 120 (167)
T PRK00522 89 AQKRFCGAEGLENVI---TLSDFRDHSFGKAYGVA 120 (167)
T ss_pred HHHHHHHhCCCCCce---EeecCCccHHHHHhCCe
Confidence 9999998643 46 9999 566999999985
No 19
>PF08534 Redoxin: Redoxin; InterPro: IPR013740 This redoxin domain is found in peroxiredoxin, thioredoxin and glutaredoxin proteins. Peroxiredoxins (Prxs) constitute a family of thiol peroxidases that reduce hydrogen peroxide, peroxinitrite, and hydroperoxides using a strictly conserved cysteine []. Chloroplast thioredoxin systems in plants regulate the enzymes involved in photosynthetic carbon assimilation []. It is thought that redoxins have a large role to play in anti-oxidant defence. Cadmium-sensitive proteins are also regulated via thioredoxin and glutaredoxin thiol redox systems [].; GO: 0016491 oxidoreductase activity; PDB: 2H30_A 1TP9_A 1Y25_A 1XVQ_A 2B1K_A 2G0F_A 2B1L_B 3K8N_A 1Z5Y_E 3OR5_A ....
Probab=99.74 E-value=1.8e-17 Score=129.94 Aligned_cols=99 Identities=27% Similarity=0.480 Sum_probs=84.6
Q ss_pred CCCCCcCCeEEEC--CCCCeEeccccccCCCCcEEEEEecCC-CCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHH
Q 026909 71 NVGDLLGDFSIFT--AAGEPVLFKDLWDQNEGVAVVALLRHF-GCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (231)
Q Consensus 71 ~vG~~ap~f~l~d--~~G~~v~l~dl~~~~~g~~vL~f~r~~-~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~ 147 (231)
++|+.+|+|++++ .+|++++++++.+ +++|++||+. |||.|+.++|.|.++++++++.|+.+|+|+.++...+
T Consensus 1 k~G~~~P~~~~~~~~~~g~~~~l~~~~g----k~~vv~f~~~~~Cp~C~~~~p~l~~l~~~~~~~~v~~v~v~~~~~~~~ 76 (146)
T PF08534_consen 1 KVGDKAPDFSLKDLDLDGKPVSLSDFKG----KPVVVNFWASAWCPPCRKELPYLNELQEKYKDKGVDVVGVSSDDDPPV 76 (146)
T ss_dssp STTSB--CCEEEEEETTSEEEEGGGGTT----SEEEEEEESTTTSHHHHHHHHHHHHHHHHHHTTTCEEEEEEESSSHHH
T ss_pred CCCCCCCCeEEEeecCCCCEecHHHhCC----CeEEEEEEccCCCCcchhhhhhHHhhhhhhccCceEEEEecccCCHHH
Confidence 5899999999965 9999999999855 4555555566 9999999999999999999999999999998877668
Q ss_pred HHHHhc--CCCCCcceeecCcchHHHHhCCc
Q 026909 148 QILAER--LPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 148 ~~~~~~--~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
.+|.++ .+|| ++.|+++.+.++||+.
T Consensus 77 ~~~~~~~~~~~~---~~~D~~~~~~~~~~~~ 104 (146)
T PF08534_consen 77 REFLKKYGINFP---VLSDPDGALAKALGVT 104 (146)
T ss_dssp HHHHHHTTTTSE---EEEETTSHHHHHTTCE
T ss_pred HHHHHhhCCCce---EEechHHHHHHHhCCc
Confidence 888874 6788 9999999999999986
No 20
>cd02971 PRX_family Peroxiredoxin (PRX) family; composed of the different classes of PRXs including many proteins originally known as bacterioferritin comigratory proteins (BCP), based on their electrophoretic mobility before their function was identified. PRXs are thiol-specific antioxidant (TSA) proteins also known as TRX peroxidases and alkyl hydroperoxide reductase C22 (AhpC) proteins. They confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either TRX, glutathione, trypanothione and AhpF. They are distinct from other peroxidases in that they have no cofactors such as metals or prosthetic groups. The first step of catalysis, common to all PRXs, is the nucleophilic attack by the catalytic cysteine (also known as the peroxidatic cysteine) on the peroxide leading to cleavage of the oxygen-oxygen bond and the formation of a
Probab=99.73 E-value=3e-17 Score=127.36 Aligned_cols=97 Identities=25% Similarity=0.407 Sum_probs=88.4
Q ss_pred CcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhc-
Q 026909 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAER- 153 (231)
Q Consensus 75 ~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~- 153 (231)
.+|+|++.|.+|++++++++.++ +++|+||++.||+.|..+++.|+++++++++.++.+|+|+.++++.+++|.++
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~gk---~~ll~f~~~~~c~~C~~~~~~l~~~~~~~~~~~~~~i~is~d~~~~~~~~~~~~ 77 (140)
T cd02971 1 KAPDFTLPATDGGEVSLSDFKGK---WVVLFFYPKDFTPVCTTELCAFRDLAEEFAKGGAEVLGVSVDSPFSHKAWAEKE 77 (140)
T ss_pred CCCCceeccCCCcEEehHHhCCC---eEEEEEeCCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEeCCCHHHHHHHHhcc
Confidence 47999999999999999999654 78888888999999999999999999999989999999999999999999984
Q ss_pred --CCCCCcceeecCcchHHHHhCCcc
Q 026909 154 --LPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 154 --~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
.+|+ +++|+++.+++.||+..
T Consensus 78 ~~~~~~---~l~D~~~~~~~~~g~~~ 100 (140)
T cd02971 78 GGLNFP---LLSDPDGEFAKAYGVLI 100 (140)
T ss_pred cCCCce---EEECCChHHHHHcCCcc
Confidence 5566 99999999999999964
No 21
>PRK15000 peroxidase; Provisional
Probab=99.73 E-value=3.5e-17 Score=135.77 Aligned_cols=102 Identities=18% Similarity=0.206 Sum_probs=86.2
Q ss_pred CCCCCCcCCeEEECC--CCCe---EeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 70 ANVGDLLGDFSIFTA--AGEP---VLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 70 ~~vG~~ap~f~l~d~--~G~~---v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
..+|+.+|+|++.+. +|+. ++++++.+++ ++||+||++.|||.|..|+++|++.+++|++.|++|++||.|+.
T Consensus 2 ~~vg~~aPdF~~~~~~~~g~~~~~~~l~~~~~gk--~vvL~F~p~~~t~vC~~El~~l~~~~~~f~~~g~~vigvS~D~~ 79 (200)
T PRK15000 2 VLVTRQAPDFTAAAVLGSGEIVDKFNFKQHTNGK--TTVLFFWPMDFTFVCPSELIAFDKRYEEFQKRGVEVVGVSFDSE 79 (200)
T ss_pred CcCCCcCCCCEeecccCCCceeeeeeHHHHhCCC--EEEEEEECCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCH
Confidence 358999999999985 3554 4555553322 78888888899999999999999999999999999999999999
Q ss_pred HHHHHHHh---------cCCCCCcceeecCcchHHHHhCCc
Q 026909 145 NKAQILAE---------RLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 145 ~~~~~~~~---------~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
+..++|.+ +++|| +++|+++++.+.||+.
T Consensus 80 ~~~~~w~~~~~~~~g~~~i~fp---llsD~~~~ia~~ygv~ 117 (200)
T PRK15000 80 FVHNAWRNTPVDKGGIGPVKYA---MVADVKREIQKAYGIE 117 (200)
T ss_pred HHHHHHHhhHHHhCCccccCce---EEECCCcHHHHHcCCc
Confidence 88888864 25799 9999999999999996
No 22
>PTZ00253 tryparedoxin peroxidase; Provisional
Probab=99.72 E-value=4.7e-17 Score=134.76 Aligned_cols=102 Identities=12% Similarity=0.145 Sum_probs=90.7
Q ss_pred CCCCCCCcCCeEEEC----CCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 69 PANVGDLLGDFSIFT----AAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 69 ~~~vG~~ap~f~l~d----~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
.+.+|+++|+|++.+ .+|+.++|+++.++ +++|+||++.||+.|..++.+|.+.+++|++.|+++|+||.|+.
T Consensus 5 ~~~~G~~aPdF~~~~~~~~~~~~~v~l~d~~Gk---~~lL~F~p~~~~~~C~~e~~~l~~~~~~f~~~g~~vv~IS~d~~ 81 (199)
T PTZ00253 5 DAKINHPAPSFEEVALMPNGSFKKISLSSYKGK---WVVLFFYPLDFTFVCPTEIIQFSDSVKRFNELNCEVLACSMDSE 81 (199)
T ss_pred ccccCCcCCCCEeeccccCCCCcEEeHHHHCCC---EEEEEEEcCCCCCcCHHHHHHHHHHHHHHHHcCCEEEEEeCCCH
Confidence 357899999999664 56789999999875 89999999999999999999999999999999999999999998
Q ss_pred HHHHHHHh---------cCCCCCcceeecCcchHHHHhCCc
Q 026909 145 NKAQILAE---------RLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 145 ~~~~~~~~---------~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
....+|.. .++|| +++|+++++.+.||+.
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~fp---ll~D~~~~ia~~ygv~ 119 (199)
T PTZ00253 82 YAHLQWTLQERKKGGLGTMAIP---MLADKTKSIARSYGVL 119 (199)
T ss_pred HHHHHHHhChHhhCCccccccc---eEECcHhHHHHHcCCc
Confidence 87777743 26899 9999999999999995
No 23
>COG0450 AhpC Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.69 E-value=1.3e-16 Score=129.34 Aligned_cols=110 Identities=22% Similarity=0.335 Sum_probs=99.5
Q ss_pred CCCCCCCcCCeEEECC-CCC---eEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 69 PANVGDLLGDFSIFTA-AGE---PVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 69 ~~~vG~~ap~f~l~d~-~G~---~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
++.+|+++|+|+.... .|+ ++++.++.++ ++||+|+++.+.+.|..|+..+++.+++|++.|++|++||.|+.
T Consensus 2 ~~lIg~~aP~F~~~a~~~~~~~~~i~l~d~~gk---w~VLff~P~DFTfVCpTEi~af~~~y~eF~~~g~eVigvS~Ds~ 78 (194)
T COG0450 2 MSLIGKKAPDFTANAVLGGEIFEEITLSDYYGK---WVVLFFYPADFTFVCPTEIIAFAKRYEEFQKRGVEVIGVSTDSV 78 (194)
T ss_pred ccccCCcCCCcEEEEEecCceeeEEechhhcCc---EEEEEeccCCCCccCcchHHHHHhhhHHHHHcCCEEEEEecCcH
Confidence 4678999999999887 774 9999999885 99999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhc---------CCCCCcceeecCcchHHHHhCCcc---c-ccceee
Q 026909 145 NKAQILAER---------LPFPMDCLYADPDRKVYNLLGLYH---G-VGRTFF 184 (231)
Q Consensus 145 ~~~~~~~~~---------~~fp~~~vl~D~~~~~~~~~g~~~---g-~~~~~~ 184 (231)
+.+.+|.+. ++|| +++|+++++.+.||+.. | ..|++|
T Consensus 79 fsH~aW~~~~~~~~gi~~i~~P---miaD~~~~vs~~ygvl~~~~g~a~R~~F 128 (194)
T COG0450 79 FSHKAWKATIREAGGIGKIKFP---MIADPKGEIARAYGVLHPEEGLALRGTF 128 (194)
T ss_pred HHHHHHHhcHHhcCCccceecc---eEEcCchhHHHHcCCcccCCCcceeEEE
Confidence 999999872 7899 99999999999999953 4 336666
No 24
>PTZ00056 glutathione peroxidase; Provisional
Probab=99.69 E-value=2.2e-16 Score=130.85 Aligned_cols=90 Identities=10% Similarity=0.221 Sum_probs=78.6
Q ss_pred CCCCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC------
Q 026909 68 FPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV------ 141 (231)
Q Consensus 68 ~~~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~------ 141 (231)
.....|..+|+|++.|.+|+.++++++. |+++|++||++|||+|+.++|.|.++++++++.|+.||+|++
T Consensus 11 ~~~~~~~~~pdf~l~d~~G~~vsL~~~k----Gkvvlv~fwAswC~~C~~e~p~L~~l~~~~~~~g~~vvgv~~~~~~~~ 86 (199)
T PTZ00056 11 SKDELRKSIYDYTVKTLEGTTVPMSSLK----NKVLMITNSASKCGLTKKHVDQMNRLHSVFNPLGLEILAFPTSQFLNQ 86 (199)
T ss_pred cchhcCCCCCceEEECCCCCEEeHHHhC----CCEEEEEEECCCCCChHHHHHHHHHHHHHHhcCceEEEEecchhccCC
Confidence 3345667899999999999999999995 468888889999999999999999999999999999999986
Q ss_pred --CCHHHHHHHHhc--CCCCCcceeec
Q 026909 142 --GTPNKAQILAER--LPFPMDCLYAD 164 (231)
Q Consensus 142 --~~~~~~~~~~~~--~~fp~~~vl~D 164 (231)
++.+.+++|.++ ++|| +++|
T Consensus 87 e~d~~e~~~~f~~~~~~~fp---vl~d 110 (199)
T PTZ00056 87 EFPNTKDIRKFNDKNKIKYN---FFEP 110 (199)
T ss_pred CCCCHHHHHHHHHHcCCCce---eeee
Confidence 467789999884 6788 8876
No 25
>KOG0855 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=9.3e-17 Score=126.42 Aligned_cols=108 Identities=21% Similarity=0.408 Sum_probs=100.0
Q ss_pred CCCCCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH
Q 026909 67 EFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (231)
Q Consensus 67 ~~~~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~ 146 (231)
...+.+||.+|||+|.|.+|.+++|.++.+++ ++|++||++.-.|.|.++...+++.|++|++.+..|++++.|+...
T Consensus 60 s~~v~~Gd~iPD~tL~dedg~sisLkkit~nk--~vV~f~YP~asTPGCTkQaCgFRDnY~k~kka~aeV~GlS~D~s~s 137 (211)
T KOG0855|consen 60 SLKVNKGDAIPDFTLKDEDGKSISLKKITGNK--PVVLFFYPAASTPGCTKQACGFRDNYEKFKKAGAEVIGLSGDDSAS 137 (211)
T ss_pred ceeeecCCcCCCcccccCCCCeeeeeeecCCC--cEEEEEeccCCCCCcccccccccccHHHHhhcCceEEeeccCchHH
Confidence 44789999999999999999999999999974 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 147 AQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 147 ~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
.++|+.+.++|+- +++||.+++.+.||...
T Consensus 138 qKaF~sKqnlPYh-LLSDpk~e~ik~lGa~k 167 (211)
T KOG0855|consen 138 QKAFASKQNLPYH-LLSDPKNEVIKDLGAPK 167 (211)
T ss_pred HHHhhhhccCCee-eecCcchhHHHHhCCCC
Confidence 9999986555543 99999999999999965
No 26
>PF13911 AhpC-TSA_2: AhpC/TSA antioxidant enzyme
Probab=99.68 E-value=2.8e-16 Score=118.92 Aligned_cols=102 Identities=31% Similarity=0.626 Sum_probs=79.4
Q ss_pred HHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeecCcchHHHHhCCcccccceeeccChhhHhhHHHHHHHH
Q 026909 122 LKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKA 201 (231)
Q Consensus 122 L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~g~~~~~~~p~~~~v~~~~~~l~~~ 201 (231)
|.+..++|++.||++|+|++++++.+++|++...||.+ ||+||++++|++||+.++...++..+. +...+..+.+.
T Consensus 2 L~~~~~~l~~~gv~lv~I~~g~~~~~~~f~~~~~~p~~-ly~D~~~~lY~~lg~~~~~~~~~~~~~---~~~~~~~~~~~ 77 (115)
T PF13911_consen 2 LSRRKPELEAAGVKLVVIGCGSPEGIEKFCELTGFPFP-LYVDPERKLYKALGLKRGLKWSLLPPA---LWSGLSNIVQS 77 (115)
T ss_pred hhHhHHHHHHcCCeEEEEEcCCHHHHHHHHhccCCCCc-EEEeCcHHHHHHhCCccccccCCCchH---HHHHHHHHHHH
Confidence 67778999999999999999999889999987666655 999999999999999987766554332 11223333333
Q ss_pred HhhcccccCCCCC-CCCcccccccEEEEecC
Q 026909 202 VQNYTIEATPDDR-RRDVCLQREATIICSQR 231 (231)
Q Consensus 202 ~k~~~~~~~~~~~-~Gd~~~q~gG~~v~~~~ 231 (231)
.++ .+++.+. +|| ++|+||+||||++
T Consensus 78 ~~~---~~~~~~~~~g~-~~q~GG~fv~d~~ 104 (115)
T PF13911_consen 78 AKN---GGIPGNKDQGD-GWQLGGTFVFDPG 104 (115)
T ss_pred HHH---cCCCCcccCCC-ceecCeEEEEcCC
Confidence 443 3567787 999 9999999999874
No 27
>KOG4498 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.66 E-value=2.8e-16 Score=126.01 Aligned_cols=135 Identities=28% Similarity=0.423 Sum_probs=112.3
Q ss_pred ECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcce
Q 026909 82 FTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCL 161 (231)
Q Consensus 82 ~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~v 161 (231)
.|..|+.|.+.+||.+ ++.++.|.|+++|-.|+++...|.++.+-+++.||.+|+|..++..+...|.++..|-.+ |
T Consensus 35 l~~rg~~vp~~~L~~~--~~avV~~vRrpgCvlCR~~aadLa~l~~~ld~~Gv~Li~vg~g~~~~~~~f~~q~~f~ge-v 111 (197)
T KOG4498|consen 35 LDSRGESVPVTSLFKE--RSAVVAFVRRPGCVLCREEAADLASLKDLLDELGVVLIAVGPGSHVQFEDFWDQTYFSGE-V 111 (197)
T ss_pred hhhcCceeehHHhhhc--CCeEEEEeccCcEEEeHHHHHHHHHHHHHHHHhCCEEEEEeccceeecchhhcccCccee-E
Confidence 6789999999999987 499999999999999999999999999999999999999999999999999998888776 9
Q ss_pred eecCcchHHHHhCCcccccceeeccChhhHhhHHHHHHHHHhhcccccCCCCCCCCcccccccEEEEecC
Q 026909 162 YADPDRKVYNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRRRDVCLQREATIICSQR 231 (231)
Q Consensus 162 l~D~~~~~~~~~g~~~g~~~~~~~p~~~~v~~~~~~l~~~~k~~~~~~~~~~~~Gd~~~q~gG~~v~~~~ 231 (231)
|.|+++.+|+.++++++.. ....+..+ +.. +|.+. .+..+|.+|| +.|+||.+++.+|
T Consensus 112 ylD~~~~~Y~~le~k~~~~-g~l~~g~~------~~~---~Ka~~-~gv~gn~~gd-~~~~gG~~~V~~G 169 (197)
T KOG4498|consen 112 YLDPHRGFYKPLEFKRAEM-GFLRPGTD------AAA---VKAKA-VGVEGNLEGD-GLLSGGVLVVGRG 169 (197)
T ss_pred EEcCccceechhhhhcccc-cccccccH------HHH---HHHhh-cccCCCcccC-hHHhCCeEEEecC
Confidence 9999999999999988531 11222221 222 33332 4568899999 9999999998875
No 28
>cd00340 GSH_Peroxidase Glutathione (GSH) peroxidase family; tetrameric selenoenzymes that catalyze the reduction of a variety of hydroperoxides including lipid peroxidases, using GSH as a specific electron donor substrate. GSH peroxidase contains one selenocysteine residue per subunit, which is involved in catalysis. Different isoenzymes are known in mammals,which are involved in protection against reactive oxygen species, redox regulation of many metabolic processes, peroxinitrite scavenging, and modulation of inflammatory processes.
Probab=99.66 E-value=2.7e-16 Score=124.72 Aligned_cols=91 Identities=16% Similarity=0.289 Sum_probs=75.7
Q ss_pred cCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC--------CHHHH
Q 026909 76 LGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TPNKA 147 (231)
Q Consensus 76 ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~--------~~~~~ 147 (231)
+|+|++.|.+|+.++++++.+ ++||++||++||| |+.++|.|+++++++++.|+.+|+|+.+ +.+.+
T Consensus 2 ~~~f~l~d~~G~~v~l~~~~G----k~vvl~fwatwC~-C~~e~p~l~~l~~~~~~~~~~vv~v~~~~~~~~~~~~~~~~ 76 (152)
T cd00340 2 IYDFSVKDIDGEPVSLSKYKG----KVLLIVNVASKCG-FTPQYEGLEALYEKYKDRGLVVLGFPCNQFGGQEPGSNEEI 76 (152)
T ss_pred cceeEEECCCCCEEeHHHhCC----CEEEEEEEcCCCC-chHHHHHHHHHHHHhcCCCEEEEEeccCccccCCCCCHHHH
Confidence 689999999999999999954 6777888899999 9999999999999999999999999864 46789
Q ss_pred HHHHhc---CCCCCcceeecC--cch-HHHHhC
Q 026909 148 QILAER---LPFPMDCLYADP--DRK-VYNLLG 174 (231)
Q Consensus 148 ~~~~~~---~~fp~~~vl~D~--~~~-~~~~~g 174 (231)
++|.++ ++|| ++.|. ++. .+..|+
T Consensus 77 ~~f~~~~~~~~fp---~~~d~d~~~~~~~~~~~ 106 (152)
T cd00340 77 KEFCETNYGVTFP---MFAKIDVNGENAHPLYK 106 (152)
T ss_pred HHHHHHhcCCCce---eeeeEeccCCCCChHHH
Confidence 999863 6788 88764 333 344444
No 29
>cd02969 PRX_like1 Peroxiredoxin (PRX)-like 1 family; hypothetical proteins that show sequence similarity to PRXs. Members of this group contain a conserved cysteine that aligns to the first cysteine in the CXXC motif of TRX. This does not correspond to the peroxidatic cysteine found in PRXs, which aligns to the second cysteine in the CXXC motif of TRX. In addition, these proteins do not contain the other two conserved residues of the catalytic triad of PRX. PRXs confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF.
Probab=99.66 E-value=1.2e-15 Score=123.16 Aligned_cols=98 Identities=23% Similarity=0.410 Sum_probs=86.3
Q ss_pred CCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC--------H
Q 026909 73 GDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT--------P 144 (231)
Q Consensus 73 G~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~--------~ 144 (231)
|+.+|+|++.|.+|+.++++++.++ +++|++||++|||.|..+++.|.++++++.+.++.+|+|+.++ +
T Consensus 1 g~~~p~f~l~~~~g~~v~l~~~~~~---k~~ll~f~~t~Cp~c~~~~~~l~~l~~~~~~~~v~~v~is~d~~~~~~~d~~ 77 (171)
T cd02969 1 GSPAPDFSLPDTDGKTYSLADFADG---KALVVMFICNHCPYVKAIEDRLNRLAKEYGAKGVAVVAINSNDIEAYPEDSP 77 (171)
T ss_pred CCcCCCccccCCCCCEEeHHHHhCC---CEEEEEEECCCCccHHHHHHHHHHHHHHHhhCCeEEEEEecCccccccccCH
Confidence 6789999999999999999998433 6677777799999999999999999999998999999999864 6
Q ss_pred HHHHHHHhc--CCCCCcceeecCcchHHHHhCCc
Q 026909 145 NKAQILAER--LPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 145 ~~~~~~~~~--~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
+.+++|.++ ++|| ++.|+++.+.+.||+.
T Consensus 78 ~~~~~~~~~~~~~~~---~l~D~~~~~~~~~~v~ 108 (171)
T cd02969 78 ENMKAKAKEHGYPFP---YLLDETQEVAKAYGAA 108 (171)
T ss_pred HHHHHHHHHCCCCce---EEECCchHHHHHcCCC
Confidence 778888874 6677 9999999999999995
No 30
>PTZ00256 glutathione peroxidase; Provisional
Probab=99.65 E-value=9.6e-16 Score=125.35 Aligned_cols=86 Identities=15% Similarity=0.277 Sum_probs=73.4
Q ss_pred CCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC--------CH
Q 026909 73 GDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TP 144 (231)
Q Consensus 73 G~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~--------~~ 144 (231)
++.+|+|+++|.+|+.++++++.|+ ++||+++|++|||+|+.++|.|+++++++++.|+.+|+|+++ +.
T Consensus 17 ~~~~p~f~l~d~~G~~vsLs~~~Gk---~vvlv~n~atwCp~C~~e~p~l~~l~~~~~~~gv~vv~vs~~~~~~~~~~~~ 93 (183)
T PTZ00256 17 TKSFFEFEAIDIDGQLVQLSKFKGK---KAIIVVNVACKCGLTSDHYTQLVELYKQYKSQGLEILAFPCNQFMEQEPWDE 93 (183)
T ss_pred CCcccceEeEcCCCCEEeHHHhCCC---cEEEEEEECCCCCchHHHHHHHHHHHHHHhhCCcEEEEEecccccccCCCCH
Confidence 5678999999999999999999765 566666689999999999999999999999999999999964 34
Q ss_pred HHHHHHHh---cCCCCCcceeec
Q 026909 145 NKAQILAE---RLPFPMDCLYAD 164 (231)
Q Consensus 145 ~~~~~~~~---~~~fp~~~vl~D 164 (231)
+.+.+|.+ .++|| ++.|
T Consensus 94 ~~~~~f~~~~~~~~fp---v~~d 113 (183)
T PTZ00256 94 PEIKEYVQKKFNVDFP---LFQK 113 (183)
T ss_pred HHHHHHHHHhcCCCCC---CceE
Confidence 66777853 47888 8855
No 31
>PLN02399 phospholipid hydroperoxide glutathione peroxidase
Probab=99.63 E-value=5.1e-15 Score=125.40 Aligned_cols=91 Identities=15% Similarity=0.271 Sum_probs=77.7
Q ss_pred CCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC-------
Q 026909 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG------- 142 (231)
Q Consensus 70 ~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~------- 142 (231)
...|+.+|+|++.|.+|+.++++++.+ +++|++||++|||.|..++++|+++++++++.|++||+|+++
T Consensus 73 ~~~g~~aPdF~l~d~~G~~vsLsd~kG----K~vvl~FwAswCp~c~~e~p~L~~L~~~~~~~Gv~VIgV~~d~~~~~e~ 148 (236)
T PLN02399 73 AATEKSVHDFTVKDIDGKDVALSKFKG----KVLLIVNVASKCGLTSSNYSELSHLYEKYKTQGFEILAFPCNQFGGQEP 148 (236)
T ss_pred hhcCCCCCceEEECCCCCEEeHHHhCC----CeEEEEEEcCCCcchHHHHHHHHHHHHHHhcCCcEEEEEecccccccCC
Confidence 358899999999999999999999954 677777779999999999999999999999999999999963
Q ss_pred -CHHHHHHHH-h--cCCCCCcceee--cCcc
Q 026909 143 -TPNKAQILA-E--RLPFPMDCLYA--DPDR 167 (231)
Q Consensus 143 -~~~~~~~~~-~--~~~fp~~~vl~--D~~~ 167 (231)
+.+.+++|. + +++|| ++. |.++
T Consensus 149 ~s~~ei~~f~~~~~g~~fP---vl~~~D~~G 176 (236)
T PLN02399 149 GSNPEIKQFACTRFKAEFP---IFDKVDVNG 176 (236)
T ss_pred CCHHHHHHHHHHhcCCCCc---cccccCCCc
Confidence 556788886 4 47788 875 4444
No 32
>PRK03147 thiol-disulfide oxidoreductase; Provisional
Probab=99.62 E-value=5.8e-15 Score=118.64 Aligned_cols=104 Identities=24% Similarity=0.346 Sum_probs=90.4
Q ss_pred CCCCCCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC-H
Q 026909 66 TEFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-P 144 (231)
Q Consensus 66 ~~~~~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~-~ 144 (231)
....+.+|+.+|+|++.+.+|+.++++++.+ +.++++||+.||+.|+.+++.|.+.++++.+.++++++|+.++ .
T Consensus 31 ~~~~~~~g~~~p~~~~~~~~g~~~~l~~~~~----k~~~l~f~a~~C~~C~~~~~~l~~~~~~~~~~~~~vi~i~~d~~~ 106 (173)
T PRK03147 31 DKEKVQVGKEAPNFVLTDLEGKKIELKDLKG----KGVFLNFWGTWCKPCEKEMPYMNELYPKYKEKGVEIIAVNVDETE 106 (173)
T ss_pred cccccCCCCCCCCcEeecCCCCEEeHHHcCC----CEEEEEEECCcCHHHHHHHHHHHHHHHHhhcCCeEEEEEEcCCCH
Confidence 3567889999999999999999999999854 4455556699999999999999999999999899999999875 4
Q ss_pred HHHHHHHhc--CCCCCcceeecCcchHHHHhCCc
Q 026909 145 NKAQILAER--LPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 145 ~~~~~~~~~--~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
+.+++|.++ .+|| ++.|+++.+.+.||+.
T Consensus 107 ~~~~~~~~~~~~~~~---~~~d~~~~~~~~~~v~ 137 (173)
T PRK03147 107 LAVKNFVNRYGLTFP---VAIDKGRQVIDAYGVG 137 (173)
T ss_pred HHHHHHHHHhCCCce---EEECCcchHHHHcCCC
Confidence 678888884 6677 8999999999999985
No 33
>PLN02412 probable glutathione peroxidase
Probab=99.61 E-value=3.5e-15 Score=120.30 Aligned_cols=87 Identities=14% Similarity=0.250 Sum_probs=72.5
Q ss_pred CCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC--------CHH
Q 026909 74 DLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TPN 145 (231)
Q Consensus 74 ~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~--------~~~ 145 (231)
+.+|+|+++|.+|+.++++++.+ +++|++||++|||.|+.+++.|+++++++++.|+.||+|+++ +.+
T Consensus 7 ~~~pdf~l~d~~G~~v~l~~~~g----k~vlv~f~a~~C~~c~~e~~~l~~l~~~~~~~g~~vvgv~~~~~~~~~~~~~~ 82 (167)
T PLN02412 7 KSIYDFTVKDIGGNDVSLNQYKG----KVLLIVNVASKCGLTDSNYKELNVLYEKYKEQGFEILAFPCNQFLGQEPGSNE 82 (167)
T ss_pred CCCCceEEECCCCCEEeHHHhCC----CEEEEEEeCCCCCChHHHHHHHHHHHHHHhhCCcEEEEecccccccCCCCCHH
Confidence 67999999999999999999954 678888889999999999999999999999999999999974 344
Q ss_pred HH-HHHHh--cCCCCCcceee--cCcc
Q 026909 146 KA-QILAE--RLPFPMDCLYA--DPDR 167 (231)
Q Consensus 146 ~~-~~~~~--~~~fp~~~vl~--D~~~ 167 (231)
.+ +.|.+ +++|| ++. |+++
T Consensus 83 ~~~~~~~~~~~~~fp---vl~~~d~~g 106 (167)
T PLN02412 83 EIQQTVCTRFKAEFP---IFDKVDVNG 106 (167)
T ss_pred HHHHHHHHccCCCCc---eEeEEeeCC
Confidence 44 44445 48888 776 4553
No 34
>TIGR02661 MauD methylamine dehydrogenase accessory protein MauD. This protein, MauD, appears critical to proper formation of the small subunit of methylamine dehydrogenase, which has both an unusual tryptophan tryptophylquinone cofactor and multiple disulfide bonds. MauD shares sequence similarity, including a CPxC motif, with a number of thiol:disulfide interchange proteins. In MauD mutants, the small subunit apparently does not form properly and is rapidly degraded.
Probab=99.60 E-value=7.5e-15 Score=120.69 Aligned_cols=103 Identities=17% Similarity=0.265 Sum_probs=81.1
Q ss_pred CCCCCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH
Q 026909 67 EFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (231)
Q Consensus 67 ~~~~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~ 146 (231)
...+++|+.+|+|+++|.+|+.+++++... +|+.+|++||++|||.|+.++|.+.+.+++ .++++++|+.++++.
T Consensus 43 ~~~~~vG~~aP~f~l~d~~G~~v~l~~~~~--~gk~vvl~F~atwCp~C~~~lp~l~~~~~~---~~~~vv~Is~~~~~~ 117 (189)
T TIGR02661 43 DHGPDVGDAAPIFNLPDFDGEPVRIGGSIA--PGRPTLLMFTAPSCPVCDKLFPIIKSIARA---EETDVVMISDGTPAE 117 (189)
T ss_pred ccCCCCCCcCCCcEecCCCCCEEeccchhc--CCCEEEEEEECCCChhHHHHHHHHHHHHHh---cCCcEEEEeCCCHHH
Confidence 345789999999999999999999964211 235666666799999999999999998754 478899999999999
Q ss_pred HHHHHhcCCCCCcceeecCcchHHHHhCCc
Q 026909 147 AQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 147 ~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
+++|.++.++.+. .+ +.++++.+.||+.
T Consensus 118 ~~~~~~~~~~~~~-~~-~~~~~i~~~y~v~ 145 (189)
T TIGR02661 118 HRRFLKDHELGGE-RY-VVSAEIGMAFQVG 145 (189)
T ss_pred HHHHHHhcCCCcc-ee-echhHHHHhccCC
Confidence 9999986544321 44 3578888899884
No 35
>cd02968 SCO SCO (an acronym for Synthesis of Cytochrome c Oxidase) family; composed of proteins similar to Sco1, a membrane-anchored protein possessing a soluble domain with a TRX fold. Members of this family are required for the proper assembly of cytochrome c oxidase (COX). They contain a metal binding motif, typically CXXXC, which is located in a flexible loop. COX, the terminal enzyme in the respiratory chain, is imbedded in the inner mitochondrial membrane of all eukaryotes and in the plasma membrane of some prokaryotes. It is composed of two subunits, COX I and COX II. It has been proposed that Sco1 specifically delivers copper to the CuA site, a dinuclear copper center, of the COX II subunit. Mutations in human Sco1 and Sco2 cause fatal infantile hepatoencephalomyopathy and cardioencephalomyopathy, respectively. Both disorders are associated with severe COX deficiency in affected tissues. More recently, it has been argued that the redox sensitivity of the copper binding properti
Probab=99.58 E-value=1.4e-14 Score=112.74 Aligned_cols=96 Identities=21% Similarity=0.359 Sum_probs=81.7
Q ss_pred CcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcc-hHHHHHHHHHHHHHhhhcC---cEEEEEeCC----CHHH
Q 026909 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPC-CWELASALKESKARFDSAG---VKLIAVGVG----TPNK 146 (231)
Q Consensus 75 ~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~-C~~~l~~L~~~~~~l~~~g---v~lv~Is~~----~~~~ 146 (231)
.+|+|++.|.+|+.+++.++.+ +++|++|+++||+. |..+++.|+++++++++.+ +++|+|+.+ +++.
T Consensus 1 ~~p~f~l~~~~g~~~~l~~~~g----k~~vl~f~~~~C~~~C~~~l~~l~~~~~~~~~~~~~~v~~v~vs~d~~~d~~~~ 76 (142)
T cd02968 1 IGPDFTLTDQDGRPVTLSDLKG----KPVLVYFGYTHCPDVCPTTLANLAQALKQLGADGGDDVQVVFISVDPERDTPEV 76 (142)
T ss_pred CCCceEEEcCCCCEEchHHhCC----CEEEEEEEcCCCcccCHHHHHHHHHHHHHhhHhhcCceEEEEEEECCCCCCHHH
Confidence 3799999999999999999843 56667777999997 9999999999999999875 999999975 4578
Q ss_pred HHHHHhc--CCCCCcceeecCc---chHHHHhCCcc
Q 026909 147 AQILAER--LPFPMDCLYADPD---RKVYNLLGLYH 177 (231)
Q Consensus 147 ~~~~~~~--~~fp~~~vl~D~~---~~~~~~~g~~~ 177 (231)
+++|.++ .+|+ ++.|++ +.+.+.||+..
T Consensus 77 ~~~~~~~~~~~~~---~l~~~~~~~~~~~~~~g~~~ 109 (142)
T cd02968 77 LKAYAKAFGPGWI---GLTGTPEEIEALAKAFGVYY 109 (142)
T ss_pred HHHHHHHhCCCcE---EEECCHHHHHHHHHHhcEEE
Confidence 8999885 4688 889875 78899999864
No 36
>cd03012 TlpA_like_DipZ_like TlpA-like family, DipZ-like subfamily; composed uncharacterized proteins containing a TlpA-like TRX domain. Some members show domain architectures similar to that of E. coli DipZ protein (also known as DsbD). The only eukaryotic members of the TlpA family belong to this subfamily. TlpA is a disulfide reductase known to have a crucial role in the biogenesis of cytochrome aa3.
Probab=99.57 E-value=9.7e-15 Score=112.01 Aligned_cols=84 Identities=17% Similarity=0.325 Sum_probs=73.1
Q ss_pred CCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC------CCHHHHHHHHhc--CCCC
Q 026909 86 GEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV------GTPNKAQILAER--LPFP 157 (231)
Q Consensus 86 G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~------~~~~~~~~~~~~--~~fp 157 (231)
|++++++++.+ +++|++||++|||.|+.+++.|+++++++++.|+.+++|+. ++.+.+++|.++ ++||
T Consensus 13 ~~~v~l~~~~g----k~vvl~F~a~~C~~C~~~~p~l~~l~~~~~~~~~~vi~i~~~~~~~~~~~~~~~~~~~~~~~~~p 88 (126)
T cd03012 13 DKPLSLAQLRG----KVVLLDFWTYCCINCLHTLPYLTDLEQKYKDDGLVVIGVHSPEFAFERDLANVKSAVLRYGITYP 88 (126)
T ss_pred CCccCHHHhCC----CEEEEEEECCCCccHHHHHHHHHHHHHHcCcCCeEEEEeccCccccccCHHHHHHHHHHcCCCCC
Confidence 57899999843 56777777999999999999999999999999999999976 357788899884 7788
Q ss_pred CcceeecCcchHHHHhCCc
Q 026909 158 MDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 158 ~~~vl~D~~~~~~~~~g~~ 176 (231)
++.|+++.+++.||+.
T Consensus 89 ---~~~D~~~~~~~~~~v~ 104 (126)
T cd03012 89 ---VANDNDYATWRAYGNQ 104 (126)
T ss_pred ---EEECCchHHHHHhCCC
Confidence 9999999999999984
No 37
>TIGR02540 gpx7 putative glutathione peroxidase Gpx7. This model represents one of several families of known and probable glutathione peroxidases. This family is restricted to animals and designated GPX7.
Probab=99.57 E-value=7.6e-15 Score=116.42 Aligned_cols=82 Identities=15% Similarity=0.248 Sum_probs=71.6
Q ss_pred cCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC--------CCHHHH
Q 026909 76 LGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--------GTPNKA 147 (231)
Q Consensus 76 ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~--------~~~~~~ 147 (231)
+-+|++.|.+|+.++++++.| +++|++||++|||.|..+++.|.++++++++.|+.+++|++ ++.+.+
T Consensus 2 ~~~f~l~~~~G~~~~l~~~~G----k~vvv~~~as~C~~c~~~~~~l~~l~~~~~~~~~~v~~i~~~~~~~~~~d~~~~~ 77 (153)
T TIGR02540 2 FYSFEVKDARGRTVSLEKYRG----KVSLVVNVASECGFTDQNYRALQELHRELGPSHFNVLAFPCNQFGESEPDSSKEI 77 (153)
T ss_pred cccceeECCCCCEecHHHhCC----CEEEEEEeCCCCCchhhhHHHHHHHHHHHhhCCeEEEEEeccccccCCCCCHHHH
Confidence 347999999999999999965 56777788999999999999999999999999999999985 567889
Q ss_pred HHHHh---cCCCCCcceeec
Q 026909 148 QILAE---RLPFPMDCLYAD 164 (231)
Q Consensus 148 ~~~~~---~~~fp~~~vl~D 164 (231)
++|++ +++|| ++.|
T Consensus 78 ~~f~~~~~~~~fp---~~~d 94 (153)
T TIGR02540 78 ESFARRNYGVTFP---MFSK 94 (153)
T ss_pred HHHHHHhcCCCCC---ccce
Confidence 99985 36788 8877
No 38
>PRK15412 thiol:disulfide interchange protein DsbE; Provisional
Probab=99.55 E-value=2e-14 Score=117.70 Aligned_cols=99 Identities=20% Similarity=0.286 Sum_probs=79.1
Q ss_pred CCCCCCCcCCeEEECCC--CCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC-CHH
Q 026909 69 PANVGDLLGDFSIFTAA--GEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG-TPN 145 (231)
Q Consensus 69 ~~~vG~~ap~f~l~d~~--G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~-~~~ 145 (231)
...+|+.+|+|++.|.+ |+.+++.++.. |+++|++||++|||+|+.++|.|.+++ +.|+++++|+.+ +.+
T Consensus 38 ~~~~g~~~p~f~l~~~~g~g~~~~~~~~~~---gk~vvv~FwatwC~~C~~e~p~l~~l~----~~~~~vi~v~~~~~~~ 110 (185)
T PRK15412 38 SALIGKPVPKFRLESLENPGQFYQADVLTQ---GKPVLLNVWATWCPTCRAEHQYLNQLS----AQGIRVVGMNYKDDRQ 110 (185)
T ss_pred hhhcCCCCCCcCCccCCCCCccccHHHhcC---CCEEEEEEECCCCHHHHHHHHHHHHHH----HcCCEEEEEECCCCHH
Confidence 35689999999999987 47777666532 367777788999999999999998764 358999999975 567
Q ss_pred HHHHHHhc--CCCCCcceeecCcchHHHHhCCc
Q 026909 146 KAQILAER--LPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 146 ~~~~~~~~--~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
.+++|.++ .+||. ++.|+++.+.+.||+.
T Consensus 111 ~~~~~~~~~~~~~~~--~~~D~~~~~~~~~gv~ 141 (185)
T PRK15412 111 KAISWLKELGNPYAL--SLFDGDGMLGLDLGVY 141 (185)
T ss_pred HHHHHHHHcCCCCce--EEEcCCccHHHhcCCC
Confidence 78889885 55662 4789999999999984
No 39
>cd03010 TlpA_like_DsbE TlpA-like family, DsbE (also known as CcmG and CycY) subfamily; DsbE is a membrane-anchored, periplasmic TRX-like reductase containing a CXXC motif that specifically donates reducing equivalents to apocytochrome c via CcmH, another cytochrome c maturation (Ccm) factor with a redox active CXXC motif. Assembly of cytochrome c requires the ligation of heme to reduced thiols of the apocytochrome. In bacteria, this assembly occurs in the periplasm. The reductase activity of DsbE in the oxidizing environment of the periplasm is crucial in the maturation of cytochrome c.
Probab=99.53 E-value=5.6e-14 Score=107.59 Aligned_cols=97 Identities=22% Similarity=0.216 Sum_probs=77.2
Q ss_pred CCcCCeEEECCCC--CeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC-CCHHHHHHH
Q 026909 74 DLLGDFSIFTAAG--EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV-GTPNKAQIL 150 (231)
Q Consensus 74 ~~ap~f~l~d~~G--~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~-~~~~~~~~~ 150 (231)
+++|+|++.|.+| +.++++++.+ +.+|+.||++|||.|+.+++.|.++.+++ ++++|+|+. ++.+.+++|
T Consensus 1 ~~~p~f~~~~~~g~~~~~~~~~~~g----k~vvv~F~a~~C~~C~~~~~~l~~l~~~~---~~~vv~v~~~~~~~~~~~~ 73 (127)
T cd03010 1 KPAPAFSLPALPGPDKTLTSADLKG----KPYLLNVWASWCAPCREEHPVLMALARQG---RVPIYGINYKDNPENALAW 73 (127)
T ss_pred CCCCCcccccccCCCccccHHHcCC----CEEEEEEEcCcCHHHHHHHHHHHHHHHhc---CcEEEEEECCCCHHHHHHH
Confidence 3689999999988 8899988864 44555556999999999999999987664 599999996 467788999
Q ss_pred HhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 151 AERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 151 ~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
.++.++++..+++|+++.+.+.||+..
T Consensus 74 ~~~~~~~~~~~~~D~~~~~~~~~~v~~ 100 (127)
T cd03010 74 LARHGNPYAAVGFDPDGRVGIDLGVYG 100 (127)
T ss_pred HHhcCCCCceEEECCcchHHHhcCCCC
Confidence 885443322267899999999999863
No 40
>TIGR00385 dsbE periplasmic protein thiol:disulfide oxidoreductases, DsbE subfamily. Involved in the biogenesis of c-type cytochromes as well as in disulfide bond formation in some periplasmic proteins.
Probab=99.52 E-value=6.4e-14 Score=113.43 Aligned_cols=99 Identities=20% Similarity=0.299 Sum_probs=77.3
Q ss_pred CCCCCCCcCCeEEECCCCCe--EeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC-CHH
Q 026909 69 PANVGDLLGDFSIFTAAGEP--VLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG-TPN 145 (231)
Q Consensus 69 ~~~vG~~ap~f~l~d~~G~~--v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~-~~~ 145 (231)
...+|+.+|+|++.|.+|+. ++++++.. |+++|++||++|||.|+.++|.+.+++ +.|+++++|+.+ +.+
T Consensus 33 ~~~vG~~ap~f~l~~~~G~~~~~~~~~~~~---gk~vll~F~a~wC~~C~~~~p~l~~l~----~~~~~vi~V~~~~~~~ 105 (173)
T TIGR00385 33 SALIGKPVPAFPLAALREPLQAYTPEAFIQ---GKPVLLNVWASWCPPCRAEHPYLNELA----KDGLPIVGVDYKDQSQ 105 (173)
T ss_pred chhcCCCCCCccccccCCCCcccCHHHhcC---CCEEEEEEECCcCHHHHHHHHHHHHHH----HcCCEEEEEECCCChH
Confidence 35789999999999999874 44445543 367777778999999999999987765 458999999975 455
Q ss_pred HHHHHHhc--CCCCCcceeecCcchHHHHhCCc
Q 026909 146 KAQILAER--LPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 146 ~~~~~~~~--~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
...+|.++ ++||. ++.|+++.+.+.|++.
T Consensus 106 ~~~~~~~~~~~~f~~--v~~D~~~~~~~~~~v~ 136 (173)
T TIGR00385 106 NALKFLKELGNPYQA--ILIDPNGKLGLDLGVY 136 (173)
T ss_pred HHHHHHHHcCCCCce--EEECCCCchHHhcCCe
Confidence 67788875 55552 5689999999999984
No 41
>cd02967 mauD Methylamine utilization (mau) D family; mauD protein is the translation product of the mauD gene found in methylotrophic bacteria, which are able to use methylamine as a sole carbon source and a nitrogen source. mauD is an essential accessory protein for the biosynthesis of methylamine dehydrogenase (MADH), the enzyme that catalyzes the oxidation of methylamine and other primary amines. MADH possesses an alpha2beta2 subunit structure; the alpha subunit is also referred to as the large subunit. Each beta (small) subunit contains a tryptophan tryptophylquinone (TTQ) prosthetic group. Accessory proteins are essential for the proper transport of MADH to the periplasm, TTQ synthesis and the formation of several structural disulfide bonds. Bacterial mutants containing an insertion on the mauD gene were unable to grow on methylamine as a sole carbon source, were found to lack the MADH small subunit and had decreased amounts of the MADH large subunit.
Probab=99.51 E-value=1.8e-13 Score=102.57 Aligned_cols=91 Identities=16% Similarity=0.277 Sum_probs=73.3
Q ss_pred CCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhc--C
Q 026909 77 GDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAER--L 154 (231)
Q Consensus 77 p~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~--~ 154 (231)
|+|++.|.+|+.++++++.. |+++|++||++||+.|+.+++.|.+++++++ .++.+++|+.++.+..++|.++ +
T Consensus 1 p~f~l~~~~G~~~~l~~~~~---gk~vvl~F~~~wC~~C~~~~p~l~~~~~~~~-~~~~vi~v~~~~~~~~~~~~~~~~~ 76 (114)
T cd02967 1 PTFDLTTIDGAPVRIGGISP---GRPTLLFFLSPTCPVCKKLLPVIRSIARAEA-DWLDVVLASDGEKAEHQRFLKKHGL 76 (114)
T ss_pred CCceeecCCCCEEEcccccC---CCeEEEEEECCCCcchHhHhHHHHHHHHHhc-CCcEEEEEeCCCHHHHHHHHHHhCC
Confidence 78999999999999999962 3566666779999999999999999888764 4688899987788889999885 4
Q ss_pred -CCCCcceeecCcchHHHHhCCc
Q 026909 155 -PFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 155 -~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
.|| ++.| +.+.+.||+.
T Consensus 77 ~~~p---~~~~--~~~~~~~~~~ 94 (114)
T cd02967 77 EAFP---YVLS--AELGMAYQVS 94 (114)
T ss_pred CCCc---EEec--HHHHhhcCCC
Confidence 367 5554 4577778774
No 42
>KOG0854 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=9.6e-13 Score=104.72 Aligned_cols=103 Identities=25% Similarity=0.374 Sum_probs=93.9
Q ss_pred CCCCCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH
Q 026909 67 EFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (231)
Q Consensus 67 ~~~~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~ 146 (231)
...+..|+.+|+|+..+..| .+.|.|+.++. +.||+--++.+.|.|..|+-++..+..||.+.||++++.|+|+.+.
T Consensus 3 ~~~l~lgd~~PNfea~Tt~g-~i~fhd~~gdS--W~vLFSHPaDFTPVCTTElgr~Akl~pEF~KRnvKlialS~d~ves 79 (224)
T KOG0854|consen 3 GPRLRLGDTVPNFEADTTVG-KIKFHDYLGDS--WGVLFSHPADFTPVCTTELGRFAKLAPEFDKRNVKLIALSVDDVES 79 (224)
T ss_pred CCcccccCcCCCcccccccc-ceehhhhcccc--eEEEecCcccCCcchhHHHHHHHhhChhhhhcCceEEEeehhhHHH
Confidence 45678999999999877665 69999999985 9999999999999999999999999999999999999999999998
Q ss_pred HHHHHh-----------cCCCCCcceeecCcchHHHHhCC
Q 026909 147 AQILAE-----------RLPFPMDCLYADPDRKVYNLLGL 175 (231)
Q Consensus 147 ~~~~~~-----------~~~fp~~~vl~D~~~~~~~~~g~ 175 (231)
.+.|.+ .++|| |+.|+++++.-.|||
T Consensus 80 H~~Wi~DIks~~~~~~~~~~yP---IIaD~~rela~~l~M 116 (224)
T KOG0854|consen 80 HKDWIKDIKSYAKVKNHSVPYP---IIADPNRELAFLLNM 116 (224)
T ss_pred HHHHHHHHHHHHhccCCCCCCC---eecCCchhhhhhhcc
Confidence 888876 27788 999999999999998
No 43
>PRK14018 trifunctional thioredoxin/methionine sulfoxide reductase A/B protein; Provisional
Probab=99.45 E-value=6.6e-13 Score=123.64 Aligned_cols=108 Identities=15% Similarity=0.122 Sum_probs=87.8
Q ss_pred CCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC------C
Q 026909 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG------T 143 (231)
Q Consensus 70 ~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~------~ 143 (231)
..+++.+|+|++.|.+|+.+.++ . |++||++||++||+.|+.++|.|.+++++++..++.||+|+.+ +
T Consensus 32 ~~~~~~lP~f~l~D~dG~~v~ls--k----GKpVvV~FWATWCppCk~emP~L~eL~~e~k~~~v~VI~Vs~~~~~~e~~ 105 (521)
T PRK14018 32 ATVPHTLSTLKTADNRPASVYLK--K----DKPTLIKFWASWCPLCLSELGETEKWAQDAKFSSANLITVASPGFLHEKK 105 (521)
T ss_pred ccccCCCCCeEeecCCCceeecc--C----CCEEEEEEEcCCCHHHHHHHHHHHHHHHHhccCCeEEEEEeccccccccc
Confidence 66778999999999999999986 2 4788888889999999999999999999998888999999863 2
Q ss_pred HHHHHHHHhcCC---CCCcceeecCcchHHHHhCCcccccce-eeccC
Q 026909 144 PNKAQILAERLP---FPMDCLYADPDRKVYNLLGLYHGVGRT-FFNPA 187 (231)
Q Consensus 144 ~~~~~~~~~~~~---fp~~~vl~D~~~~~~~~~g~~~g~~~~-~~~p~ 187 (231)
....++|.+..+ || ++.|+++.+.+.|++. ++..+ ++++.
T Consensus 106 ~~~~~~~~~~~~y~~~p---V~~D~~~~lak~fgV~-giPTt~IIDkd 149 (521)
T PRK14018 106 DGDFQKWYAGLDYPKLP---VLTDNGGTLAQSLNIS-VYPSWAIIGKD 149 (521)
T ss_pred HHHHHHHHHhCCCcccc---eeccccHHHHHHcCCC-CcCeEEEEcCC
Confidence 345667776554 47 8999999999999985 55544 34554
No 44
>cd02966 TlpA_like_family TlpA-like family; composed of TlpA, ResA, DsbE and similar proteins. TlpA, ResA and DsbE are bacterial protein disulfide reductases with important roles in cytochrome maturation. They are membrane-anchored proteins with a soluble TRX domain containing a CXXC motif located in the periplasm. The TRX domains of this family contain an insert, approximately 25 residues in length, which correspond to an extra alpha helix and a beta strand when compared with TRX. TlpA catalyzes an essential reaction in the biogenesis of cytochrome aa3, while ResA and DsbE are essential proteins in cytochrome c maturation. Also included in this family are proteins containing a TlpA-like TRX domain with domain architectures similar to E. coli DipZ protein, and the N-terminal TRX domain of PilB protein from Neisseria which acts as a disulfide reductase that can recylce methionine sulfoxide reductases.
Probab=99.45 E-value=1.1e-12 Score=96.62 Aligned_cols=92 Identities=26% Similarity=0.500 Sum_probs=81.1
Q ss_pred CeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC--HHHHHHHHhc--
Q 026909 78 DFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT--PNKAQILAER-- 153 (231)
Q Consensus 78 ~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~--~~~~~~~~~~-- 153 (231)
+|.+.+.+|+.+++.++.+ +.+|++|++.||+.|+..++.|.++.+++.+.++.+++|+.+. .+.+++|.++
T Consensus 1 ~~~~~~~~g~~~~~~~~~~----k~~ll~f~~~~C~~C~~~~~~l~~~~~~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~ 76 (116)
T cd02966 1 DFSLPDLDGKPVSLSDLKG----KVVLVNFWASWCPPCRAEMPELEALAKEYKDDGVEVVGVNVDDDDPAAVKAFLKKYG 76 (116)
T ss_pred CccccCCCCCEeehHHcCC----CEEEEEeecccChhHHHHhHHHHHHHHHhCCCCeEEEEEECCCCCHHHHHHHHHHcC
Confidence 4788899999999999853 5677777799999999999999999999988889999999987 8889999885
Q ss_pred CCCCCcceeecCcchHHHHhCCc
Q 026909 154 LPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 154 ~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
.+|+ ++.|++..+.+.||+.
T Consensus 77 ~~~~---~~~~~~~~~~~~~~~~ 96 (116)
T cd02966 77 ITFP---VLLDPDGELAKAYGVR 96 (116)
T ss_pred CCcc---eEEcCcchHHHhcCcC
Confidence 5667 8999999999999996
No 45
>PRK10606 btuE putative glutathione peroxidase; Provisional
Probab=99.45 E-value=5.1e-13 Score=109.26 Aligned_cols=92 Identities=13% Similarity=0.240 Sum_probs=76.2
Q ss_pred CCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC--------CCHH
Q 026909 74 DLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--------GTPN 145 (231)
Q Consensus 74 ~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~--------~~~~ 145 (231)
+.+++|++.|.+|+.++|+++.| ++||+.+|++||+.|. +++.|+++++++++.|+.|++|++ ++.+
T Consensus 3 ~~~~~f~~~~~~G~~v~Ls~~~G----KvvLVvf~AS~C~~~~-q~~~L~~L~~~y~~~gl~Vlg~p~nqf~~qe~~~~~ 77 (183)
T PRK10606 3 DSILTTVVTTIDGEVTTLEKYAG----NVLLIVNVASKCGLTP-QYEQLENIQKAWADQGFVVLGFPCNQFLGQEPGSDE 77 (183)
T ss_pred CCccCcEeECCCCCEEeHHHhCC----CEEEEEEEeCCCCCcH-HHHHHHHHHHHHhhCCeEEEEeeccccccCCCCCHH
Confidence 35789999999999999999964 6777777899999995 799999999999999999999988 4667
Q ss_pred HHHHHHh-c--CCCCCccee--ecCcch----HHHHh
Q 026909 146 KAQILAE-R--LPFPMDCLY--ADPDRK----VYNLL 173 (231)
Q Consensus 146 ~~~~~~~-~--~~fp~~~vl--~D~~~~----~~~~~ 173 (231)
.+++|++ + ++|| ++ .|.++. +|+-+
T Consensus 78 ei~~f~~~~~g~~Fp---v~~k~dvnG~~~~pl~~~L 111 (183)
T PRK10606 78 EIKTYCRTTWGVTFP---MFSKIEVNGEGRHPLYQKL 111 (183)
T ss_pred HHHHHHHHccCCCce---eEEEEccCCCCCCHHHHHH
Confidence 8999986 3 6788 88 555543 56554
No 46
>cd03011 TlpA_like_ScsD_MtbDsbE TlpA-like family, suppressor for copper sensitivity D protein (ScsD) and actinobacterial DsbE homolog subfamily; composed of ScsD, the DsbE homolog of Mycobacterium tuberculosis (MtbDsbE) and similar proteins, all containing a redox-active CXXC motif. The Salmonella typhimurium ScsD is a thioredoxin-like protein which confers copper tolerance to copper-sensitive mutants of E. coli. MtbDsbE has been characterized as an oxidase in vitro, catalyzing the disulfide bond formation of substrates like hirudin. The reduced form of MtbDsbE is more stable than its oxidized form, consistent with an oxidase function. This is in contrast to the function of DsbE from gram-negative bacteria which is a specific reductase of apocytochrome c.
Probab=99.41 E-value=1.9e-12 Score=98.29 Aligned_cols=89 Identities=19% Similarity=0.304 Sum_probs=73.9
Q ss_pred CCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC--CHHHHHHHHhc-
Q 026909 77 GDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--TPNKAQILAER- 153 (231)
Q Consensus 77 p~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~--~~~~~~~~~~~- 153 (231)
|+|+++|.+|+.+++.++.+ +.+|++|++.||+.|+.+++.|.+++++ +.+++|+.+ +.+.+++|.++
T Consensus 1 p~f~l~~~~g~~~~~~~~~~----k~~vl~F~~~~C~~C~~~~~~l~~~~~~-----~~~i~i~~~~~~~~~~~~~~~~~ 71 (123)
T cd03011 1 PLFTATTLDGEQFDLESLSG----KPVLVYFWATWCPVCRFTSPTVNQLAAD-----YPVVSVALRSGDDGAVARFMQKK 71 (123)
T ss_pred CCceeecCCCCEeeHHHhCC----CEEEEEEECCcChhhhhhChHHHHHHhh-----CCEEEEEccCCCHHHHHHHHHHc
Confidence 78999999999999999854 4555555699999999999999999876 567777765 46888899884
Q ss_pred -CCCCCcceeecCcchHHHHhCCcc
Q 026909 154 -LPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 154 -~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
++|| ++.|+++++.+.|++..
T Consensus 72 ~~~~~---~~~d~~~~~~~~~~i~~ 93 (123)
T cd03011 72 GYGFP---VINDPDGVISARWGVSV 93 (123)
T ss_pred CCCcc---EEECCCcHHHHhCCCCc
Confidence 7777 88999999999999853
No 47
>cd03008 TryX_like_RdCVF Tryparedoxin (TryX)-like family, Rod-derived cone viability factor (RdCVF) subfamily; RdCVF is a thioredoxin (TRX)-like protein specifically expressed in photoreceptors. RdCVF was isolated and identified as a factor that supports cone survival in retinal cultures. Cone photoreceptor loss is responsible for the visual handicap resulting from the inherited disease, retinitis pigmentosa. RdCVF shows 33% similarity to TRX but does not exhibit any detectable thiol oxidoreductase activity.
Probab=99.38 E-value=4.8e-12 Score=99.80 Aligned_cols=97 Identities=13% Similarity=0.213 Sum_probs=71.1
Q ss_pred CeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhc-------CcEEEEEeCCC-HHHHHHHHhcCC--C
Q 026909 87 EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSA-------GVKLIAVGVGT-PNKAQILAERLP--F 156 (231)
Q Consensus 87 ~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~-------gv~lv~Is~~~-~~~~~~~~~~~~--f 156 (231)
+.++++++. |+++++.||++|||+|+.++|.|.+++++++++ ++.+|+|+.+. .+..++|.++.+ |
T Consensus 16 ~~~~ls~~k----gk~vlL~FwAsWCppCr~e~P~L~~ly~~~~~~~~~~~~~~~~vV~Vs~D~~~~~~~~f~~~~~~~~ 91 (146)
T cd03008 16 EREIVARLE----NRVLLLFFGAVVSPQCQLFAPKLKDFFVRLTDEFYVDRSAQLALVYVSMDQSEQQQESFLKDMPKKW 91 (146)
T ss_pred ccccHHHhC----CCEEEEEEECCCChhHHHHHHHHHHHHHHHHhhcccccCCCEEEEEEECCCCHHHHHHHHHHCCCCc
Confidence 456778884 478888888999999999999999999888654 69999999885 455888888654 5
Q ss_pred CCcceeecCcchHHHHhCCccccccee-eccCh
Q 026909 157 PMDCLYADPDRKVYNLLGLYHGVGRTF-FNPAS 188 (231)
Q Consensus 157 p~~~vl~D~~~~~~~~~g~~~g~~~~~-~~p~~ 188 (231)
+...+..+.++.+.+.||+. +++.+. +++.+
T Consensus 92 ~~~p~~~~~~~~l~~~y~v~-~iPt~vlId~~G 123 (146)
T cd03008 92 LFLPFEDEFRRELEAQFSVE-ELPTVVVLKPDG 123 (146)
T ss_pred eeecccchHHHHHHHHcCCC-CCCEEEEECCCC
Confidence 32103334456899999984 565444 36553
No 48
>cd03009 TryX_like_TryX_NRX Tryparedoxin (TryX)-like family, TryX and nucleoredoxin (NRX) subfamily; TryX and NRX are thioredoxin (TRX)-like protein disulfide oxidoreductases that alter the redox state of target proteins via the reversible oxidation of an active center CXXC motif. TryX is involved in the regulation of oxidative stress in parasitic trypanosomatids by reducing TryX peroxidase, which in turn catalyzes the reduction of hydrogen peroxide and organic hydroperoxides. TryX derives reducing equivalents from reduced trypanothione, a polyamine peptide conjugate unique to trypanosomatids, which is regenerated by the NADPH-dependent flavoprotein trypanothione reductase. Vertebrate NRX is a 400-amino acid nuclear protein with one redox active TRX domain containing a CPPC active site motif followed by one redox inactive TRX-like domain. Mouse NRX transcripts are expressed in all adult tissues but is restricted to the nervous system and limb buds in embryos. Plant NRX, longer than the
Probab=99.35 E-value=4.7e-12 Score=97.48 Aligned_cols=101 Identities=12% Similarity=0.241 Sum_probs=74.6
Q ss_pred EECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhc--CcEEEEEeCCCH-HHHHHHHhcCC--
Q 026909 81 IFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSA--GVKLIAVGVGTP-NKAQILAERLP-- 155 (231)
Q Consensus 81 l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~--gv~lv~Is~~~~-~~~~~~~~~~~-- 155 (231)
+.|.+|+.++++++.+ +++|++||++||+.|+.+++.|.++++++.+. ++++++|+.+.. +..++|.++.+
T Consensus 3 l~~~~G~~v~l~~~~g----k~vll~Fwa~wC~~C~~~~p~l~~~~~~~~~~~~~~~vv~is~d~~~~~~~~~~~~~~~~ 78 (131)
T cd03009 3 LLRNDGGKVPVSSLEG----KTVGLYFSASWCPPCRAFTPKLVEFYEKLKESGKNFEIVFISWDRDEESFNDYFSKMPWL 78 (131)
T ss_pred ccccCCCCccHHHhCC----cEEEEEEECCCChHHHHHhHHHHHHHHHHHhcCCCEEEEEEECCCCHHHHHHHHHcCCee
Confidence 4678999999999954 67888888999999999999999999999865 799999998854 44566665433
Q ss_pred -CCCcceeecCcchHHHHhCCccccccee-eccCh
Q 026909 156 -FPMDCLYADPDRKVYNLLGLYHGVGRTF-FNPAS 188 (231)
Q Consensus 156 -fp~~~vl~D~~~~~~~~~g~~~g~~~~~-~~p~~ 188 (231)
+|.. . .|.+..+.+.||+. ++...+ +++.+
T Consensus 79 ~~~~~-~-~~~~~~~~~~~~v~-~~P~~~lid~~G 110 (131)
T cd03009 79 AVPFS-D-RERRSRLNRTFKIE-GIPTLIILDADG 110 (131)
T ss_pred EcccC-C-HHHHHHHHHHcCCC-CCCEEEEECCCC
Confidence 2311 1 35667889999985 344333 35544
No 49
>KOG0852 consensus Alkyl hydroperoxide reductase, thiol specific antioxidant and related enzymes [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.2e-11 Score=98.41 Aligned_cols=101 Identities=13% Similarity=0.111 Sum_probs=89.5
Q ss_pred CCCCCCcCCeEE---ECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH
Q 026909 70 ANVGDLLGDFSI---FTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (231)
Q Consensus 70 ~~vG~~ap~f~l---~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~ 146 (231)
+.+..++|+|+- .|..-+.++|.++.++ +++++||+..+...|..|+-++++.+++|++.|.+|+++|+|+.+.
T Consensus 4 ~~~~~p~p~fk~~aVVdG~f~e~~L~dy~gk---yvvlfFyplDftfVcPteIiafSd~~~eF~~~n~eVig~S~DS~fs 80 (196)
T KOG0852|consen 4 EVVFKPAPDFKGTAVVDGEFKEIKLSDYKGK---YVVLFFYPLDFTFVCPTEIIAFSDRAPEFRKLNTEVLGISTDSVFS 80 (196)
T ss_pred cccCCCCCCcceeEEEcCcceEEeehhhccc---EEEEEecCCceeeECchhhhhhhhhHHHHHhcCCeEEEEeccchhh
Confidence 345556688864 4556689999999987 8999999999999999999999999999999999999999999999
Q ss_pred HHHHHh---------cCCCCCcceeecCcchHHHHhCCc
Q 026909 147 AQILAE---------RLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 147 ~~~~~~---------~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
+.+|.. ..++| +++|.+.++.+.||+.
T Consensus 81 hlAW~ntprk~gGlg~~~iP---llsD~~~~IsrdyGvL 116 (196)
T KOG0852|consen 81 HLAWINTPRKQGGLGPLNIP---LLSDLNHEISRDYGVL 116 (196)
T ss_pred hhhHhcCchhhCCcCccccc---eeeccchhhHHhcCce
Confidence 999976 25599 9999999999999994
No 50
>PRK13728 conjugal transfer protein TrbB; Provisional
Probab=99.30 E-value=1.1e-11 Score=100.79 Aligned_cols=95 Identities=19% Similarity=0.286 Sum_probs=73.0
Q ss_pred CCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHH
Q 026909 71 NVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL 150 (231)
Q Consensus 71 ~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~ 150 (231)
.+...-++|++. +|+.++++++ + |++||++|||+|++++|.|+++++++ |+.|++|+.|+..
T Consensus 50 ~~~~~~~~f~l~--dG~~v~lsd~------~--lV~FwaswCp~C~~e~P~L~~l~~~~---g~~Vi~Vs~D~~~----- 111 (181)
T PRK13728 50 TEKPAPRWFRLS--NGRQVNLADW------K--VVLFMQGHCPYCHQFDPVLKQLAQQY---GFSVFPYTLDGQG----- 111 (181)
T ss_pred cCCCCCCccCCC--CCCEeehhHc------e--EEEEECCCCHhHHHHHHHHHHHHHHc---CCEEEEEEeCCCC-----
Confidence 445567788885 7999999998 4 55577999999999999999999886 6999999987542
Q ss_pred HhcCCCCCcceeec-CcchHHHHhCC-cccccceee-ccCh
Q 026909 151 AERLPFPMDCLYAD-PDRKVYNLLGL-YHGVGRTFF-NPAS 188 (231)
Q Consensus 151 ~~~~~fp~~~vl~D-~~~~~~~~~g~-~~g~~~~~~-~p~~ 188 (231)
...|| ++.| .++.+.+.||. ..++..+++ ++.+
T Consensus 112 --~~~fP---v~~dd~~~~~~~~~g~~~~~iPttfLId~~G 147 (181)
T PRK13728 112 --DTAFP---EALPAPPDVMQTFFPNIPVATPTTFLVNVNT 147 (181)
T ss_pred --CCCCc---eEecCchhHHHHHhCCCCCCCCeEEEEeCCC
Confidence 36899 8885 67778888985 345554443 4443
No 51
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.29 E-value=9.8e-12 Score=125.14 Aligned_cols=107 Identities=16% Similarity=0.251 Sum_probs=87.3
Q ss_pred CCCCCCCCcCCeEEEC--CCCCeEec-cccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC---
Q 026909 68 FPANVGDLLGDFSIFT--AAGEPVLF-KDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--- 141 (231)
Q Consensus 68 ~~~~vG~~ap~f~l~d--~~G~~v~l-~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~--- 141 (231)
....+|+.+|+|...+ .+|+++++ +++. |+++|+.||++||+.|+.++|.|.+++++++++++.+|+|+.
T Consensus 389 ~~~~~g~~~p~f~~~~~~~~g~~~~l~~~lk----GK~vll~FWAsWC~pC~~e~P~L~~l~~~y~~~~~~vvgV~~~~~ 464 (1057)
T PLN02919 389 ESKKTATKVPEFPPKLDWLNTAPLQFRRDLK----GKVVILDFWTYCCINCMHVLPDLEFLEKKYKDQPFTVVGVHSAKF 464 (1057)
T ss_pred hccccCCcCCCCcccccccCCccccchhhcC----CCEEEEEEECCcChhHHhHhHHHHHHHHHcCCCCeEEEEEecccc
Confidence 3356799999999876 68999998 4673 478888899999999999999999999999999999999974
Q ss_pred C---CHHHHHHHHhc--CCCCCcceeecCcchHHHHhCCcccccce
Q 026909 142 G---TPNKAQILAER--LPFPMDCLYADPDRKVYNLLGLYHGVGRT 182 (231)
Q Consensus 142 ~---~~~~~~~~~~~--~~fp~~~vl~D~~~~~~~~~g~~~g~~~~ 182 (231)
+ +.+.+++|.++ +.|| ++.|.+..+++.|++. ++...
T Consensus 465 D~~~~~~~~~~~~~~~~i~~p---vv~D~~~~~~~~~~V~-~iPt~ 506 (1057)
T PLN02919 465 DNEKDLEAIRNAVLRYNISHP---VVNDGDMYLWRELGVS-SWPTF 506 (1057)
T ss_pred cccccHHHHHHHHHHhCCCcc---EEECCchHHHHhcCCC-ccceE
Confidence 2 24456677664 6778 8999999999999984 44433
No 52
>COG0678 AHP1 Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1e-11 Score=96.48 Aligned_cols=107 Identities=20% Similarity=0.172 Sum_probs=88.9
Q ss_pred CCCCCCCcCCeEEECC------CC-CeEeccccccCCCCcEEEEEecCCCCcchHH-HHHHHHHHHHHhhhcCcE-EEEE
Q 026909 69 PANVGDLLGDFSIFTA------AG-EPVLFKDLWDQNEGVAVVALLRHFGCPCCWE-LASALKESKARFDSAGVK-LIAV 139 (231)
Q Consensus 69 ~~~vG~~ap~f~l~d~------~G-~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~-~l~~L~~~~~~l~~~gv~-lv~I 139 (231)
.+.+|+++|..++... .| ..++-.++.+.+ +++|+-.++.+.|.|.. |+|.+.+++++|+++||. |++|
T Consensus 2 ~~~vg~klP~vtf~tr~~~~~~~~~~~~ts~~lf~gK--kVvlf~lPGAFTPTCS~~hlPgY~~~~d~f~~kGVD~I~cV 79 (165)
T COG0678 2 TIMVGKKLPAVTFKTRVGDETADGWVDVTTDDLFKGK--KVVLFSLPGAFTPTCSSSHLPGYLELADEFKAKGVDEIYCV 79 (165)
T ss_pred ccccCCcCCceEeEEeeccccCCCcccccHHHhcCCC--EEEEEeCCCccCCCcccccCccHHHHHHHHHHcCCceEEEE
Confidence 4678999999888654 22 456667777653 89999999999999985 999999999999999998 8889
Q ss_pred eCCCHHHHHHHHhcCCCC-CcceeecCcchHHHHhCCcc
Q 026909 140 GVGTPNKAQILAERLPFP-MDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 140 s~~~~~~~~~~~~~~~fp-~~~vl~D~~~~~~~~~g~~~ 177 (231)
+++|++.+.+|.+..+-- .-.++.|.++++.+++|+..
T Consensus 80 SVND~FVm~AWak~~g~~~~I~fi~Dg~geFTk~~Gm~~ 118 (165)
T COG0678 80 SVNDAFVMNAWAKSQGGEGNIKFIPDGNGEFTKAMGMLV 118 (165)
T ss_pred EeCcHHHHHHHHHhcCCCccEEEecCCCchhhhhcCcee
Confidence 999999999999954333 22388999999999999954
No 53
>TIGR01626 ytfJ_HI0045 conserved hypothetical protein YtfJ-family, TIGR01626. This model represents sequences from gamma proteobacteria that are related to the E. coli protein, YtfJ.
Probab=99.27 E-value=1.7e-11 Score=100.18 Aligned_cols=111 Identities=14% Similarity=0.010 Sum_probs=84.8
Q ss_pred cccCCCCCCCCCCcCCeEEECC-----C-----CCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhc
Q 026909 63 ASATEFPANVGDLLGDFSIFTA-----A-----GEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSA 132 (231)
Q Consensus 63 ~~~~~~~~~vG~~ap~f~l~d~-----~-----G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~ 132 (231)
....+..+.+|+.+|.+.+.|. + .++++.+++. |++.|++||+.||+.|+.++|-|.++ +++
T Consensus 16 ~~~~a~~~~~~~~~p~v~~~~~ge~~~~~~~~~y~~~~~~~l~----GKV~lvn~~Aswc~~c~~e~P~l~~l----~~~ 87 (184)
T TIGR01626 16 SSAWAHNLQVEQSVPSVGVSEYGEIVLSGKDTVYQPWGSAELA----GKVRVVHHIAGRTSAKEXNASLIDAI----KAA 87 (184)
T ss_pred HHHhhhhhhcCCcCCceEecCCceEEEcCCcccceeccHHHcC----CCEEEEEEEecCCChhhccchHHHHH----HHc
Confidence 3445678999999999988764 3 3566667774 58999999999999999999999988 566
Q ss_pred CcEE------EEEeCCCH-HHHHHHHh------cCCCCCcceeecCcchHHHHhCCcccccce
Q 026909 133 GVKL------IAVGVGTP-NKAQILAE------RLPFPMDCLYADPDRKVYNLLGLYHGVGRT 182 (231)
Q Consensus 133 gv~l------v~Is~~~~-~~~~~~~~------~~~fp~~~vl~D~~~~~~~~~g~~~g~~~~ 182 (231)
|+.+ ++|+.++. .....|.+ +.+||...++.|+++.+..+||+. ++..+
T Consensus 88 ~~~~~~y~~t~~IN~dd~~~~~~~fVk~fie~~~~~~P~~~vllD~~g~v~~~~gv~-~~P~T 149 (184)
T TIGR01626 88 KFPPVKYQTTTIINADDAIVGTGMFVKSSAKKGKKENPWSQVVLDDKGAVKNAWQLN-SEDSA 149 (184)
T ss_pred CCCcccccceEEEECccchhhHHHHHHHHHHHhcccCCcceEEECCcchHHHhcCCC-CCCce
Confidence 7888 99998863 34444543 456664458999999999999985 44444
No 54
>cd02964 TryX_like_family Tryparedoxin (TryX)-like family; composed of TryX and related proteins including nucleoredoxin (NRX), rod-derived cone viability factor (RdCVF) and the nematode homolog described as a 16-kD class of TRX. Most members of this family, except RdCVF, are protein disulfide oxidoreductases containing an active site CXXC motif, similar to TRX.
Probab=99.25 E-value=3.3e-11 Score=93.11 Aligned_cols=94 Identities=14% Similarity=0.186 Sum_probs=69.5
Q ss_pred ECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhc--CcEEEEEeCCC-HHHHHHHHhcCC-CC
Q 026909 82 FTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSA--GVKLIAVGVGT-PNKAQILAERLP-FP 157 (231)
Q Consensus 82 ~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~--gv~lv~Is~~~-~~~~~~~~~~~~-fp 157 (231)
.|.+ ++++++++. |+++|++||++||+.|+.+++.|+++++++++. ++.+++|+.+. .+..++|.++.+ |.
T Consensus 4 ~~~~-~~v~l~~~~----Gk~vll~F~atwC~~C~~~~p~l~~l~~~~~~~~~~v~vi~Vs~d~~~~~~~~~~~~~~~~~ 78 (132)
T cd02964 4 LDGE-GVVPVSALE----GKTVGLYFSASWCPPCRAFTPKLVEFYEKLKEEGKNFEIVFVSRDRSEESFNEYFSEMPPWL 78 (132)
T ss_pred ccCC-ccccHHHhC----CCEEEEEEECCCCchHHHHHHHHHHHHHHHhhcCCCeEEEEEecCCCHHHHHHHHhcCCCeE
Confidence 3444 599999995 478888888999999999999999999999875 79999999884 567888988763 33
Q ss_pred Ccceeec--CcchHHHHhCCcccccce
Q 026909 158 MDCLYAD--PDRKVYNLLGLYHGVGRT 182 (231)
Q Consensus 158 ~~~vl~D--~~~~~~~~~g~~~g~~~~ 182 (231)
.- .+.| ....+.+.||+. ++...
T Consensus 79 ~~-~~~d~~~~~~~~~~~~v~-~iPt~ 103 (132)
T cd02964 79 AV-PFEDEELRELLEKQFKVE-GIPTL 103 (132)
T ss_pred ee-ccCcHHHHHHHHHHcCCC-CCCEE
Confidence 10 1233 234566778874 44433
No 55
>KOG0541 consensus Alkyl hydroperoxide reductase/peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.24 E-value=1.1e-11 Score=96.76 Aligned_cols=110 Identities=25% Similarity=0.310 Sum_probs=89.8
Q ss_pred CCCCCCCCCCcCC--eEEE-CC----CCCeEeccccccCCCCcEEEEEecCCCCcch-HHHHHHHHHHHHHhhhcCcE-E
Q 026909 66 TEFPANVGDLLGD--FSIF-TA----AGEPVLFKDLWDQNEGVAVVALLRHFGCPCC-WELASALKESKARFDSAGVK-L 136 (231)
Q Consensus 66 ~~~~~~vG~~ap~--f~l~-d~----~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C-~~~l~~L~~~~~~l~~~gv~-l 136 (231)
...++++||.+|+ .++. |. .+.+++++++...+ +++|+-.++.+.|.| ..|+|.+.+..++|+++||+ |
T Consensus 5 ~~a~i~vGd~~p~~~is~~~~~~~~~~~~tv~~~~l~~GK--KvIifGvPgAFtPtCs~~HvPGyi~~a~elksKGVd~i 82 (171)
T KOG0541|consen 5 VMAPIAVGDTLPSGTISLFEDEPEQLQGNTVNVSSLFKGK--KVILFGVPGAFTPTCSSSHVPGYIEKADELKSKGVDEI 82 (171)
T ss_pred ccccccccCccccccchhhccCccccccceEEhHHhcCCc--eEEEEcCCCccCCccccccCchHHHHHHHHHhcCCcEE
Confidence 4567899999999 4422 22 23389999998764 899999999999996 57999999999999999998 7
Q ss_pred EEEeCCCHHHHHHHHhcCCCC-CcceeecCcchHHHHhCCcc
Q 026909 137 IAVGVGTPNKAQILAERLPFP-MDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 137 v~Is~~~~~~~~~~~~~~~fp-~~~vl~D~~~~~~~~~g~~~ 177 (231)
++|+.+|++.+++|.+.++=. .-.+++|+++++.+.+|+..
T Consensus 83 icvSVnDpFv~~aW~k~~g~~~~V~f~aD~~g~ftk~lglel 124 (171)
T KOG0541|consen 83 ICVSVNDPFVMKAWAKSLGANDHVKFVADPAGEFTKSLGLEL 124 (171)
T ss_pred EEEecCcHHHHHHHHhhcCccceEEEEecCCCceeeecccee
Confidence 779999999999999854321 11288999999999999953
No 56
>COG2077 Tpx Peroxiredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=99.06 E-value=1.1e-09 Score=85.30 Aligned_cols=106 Identities=16% Similarity=0.233 Sum_probs=92.0
Q ss_pred CCCCCCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 66 TEFPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 66 ~~~~~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
....+++|+++|+|++.+.+.+.+++.++.++ +.+|..|+.-..|.|-.+.+.+++...++. ++.++.||.|-|+
T Consensus 14 ~g~~~~vGd~ap~ftl~~~dL~~v~l~~~~gk---~~vi~v~PSiDT~VC~~qvr~Fn~~aa~~~--~~~Vl~IS~DLPF 88 (158)
T COG2077 14 KGNEPQVGDKAPDFTLVGKDLNDVSLADFAGK---KKVISVFPSIDTPVCATQVRKFNEEAAKLG--NTVVLCISMDLPF 88 (158)
T ss_pred cCCCCccCCcCCceEEEcCcccceeccccCCc---eEEEEEccCCCCchhhHHHHHHHHHHhccC--CcEEEEEeCCChh
Confidence 45668999999999999999999999999887 899999999999999999999999988775 4889999999999
Q ss_pred HHHHHHhcCCCCCcceeecC-cchHHHHhCCc
Q 026909 146 KAQILAERLPFPMDCLYADP-DRKVYNLLGLY 176 (231)
Q Consensus 146 ~~~~~~~~~~fp~~~vl~D~-~~~~~~~~g~~ 176 (231)
.+++|+...+..+-..++|- ++.+-++||+.
T Consensus 89 Aq~RfC~aeGi~nv~~lSd~r~~~Fge~yGv~ 120 (158)
T COG2077 89 AQKRFCGAEGIENVITLSDFRDRAFGENYGVL 120 (158)
T ss_pred HHhhhhhhcCcccceEhhhhhhhhhhHhhCEE
Confidence 99999985555443378884 45577999994
No 57
>PF13905 Thioredoxin_8: Thioredoxin-like; PDB: 1FG4_A 1I5G_A 1OC8_B 1O6J_A 1OC9_B 1O81_A 3FKF_A 1O85_A 1O7U_A 1O8W_A ....
Probab=99.04 E-value=2e-09 Score=77.98 Aligned_cols=78 Identities=18% Similarity=0.293 Sum_probs=57.4
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhh-hcCcEEEEEeCCC-HHHHHHHHhcCCCCCcceee--cCcchHHHHhCC
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFD-SAGVKLIAVGVGT-PNKAQILAERLPFPMDCLYA--DPDRKVYNLLGL 175 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~-~~gv~lv~Is~~~-~~~~~~~~~~~~fp~~~vl~--D~~~~~~~~~g~ 175 (231)
|+++++.||+.||+.|+.+++.|.+++++++ +.++++|+|+.+. .+..+++.++.+++...+.. |....+.+.|++
T Consensus 1 gK~~ll~fwa~~c~~c~~~~~~l~~l~~~~~~~~~v~~v~Vs~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~i 80 (95)
T PF13905_consen 1 GKPVLLYFWASWCPPCKKELPKLKELYKKYKKKDDVEFVFVSLDEDEEEWKKFLKKNNFPWYNVPFDDDNNSELLKKYGI 80 (95)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEE-SSSHHHHHHHHHTCTTSSEEEETTTHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHhCCCCCEEEEEEEeCCCHHHHHHHHHhcCCCceEEeeCcchHHHHHHHCCC
Confidence 4788888889999999999999999999998 7789999999985 46778887765333221222 234667888888
Q ss_pred cc
Q 026909 176 YH 177 (231)
Q Consensus 176 ~~ 177 (231)
..
T Consensus 81 ~~ 82 (95)
T PF13905_consen 81 NG 82 (95)
T ss_dssp TS
T ss_pred Cc
Confidence 64
No 58
>PF02630 SCO1-SenC: SCO1/SenC; InterPro: IPR003782 This family is involved in biogenesis of respiratory and photosynthetic systems. In yeast the SCO1 protein is specifically required for a post-translational step in the accumulation of subunits 1 and 2 of cytochrome c oxidase (COXI and COX-II) []. It is a mitochondrion-associated cytochrome c oxidase assembly factor. The purple nonsulphur photosynthetic eubacterium Rhodobacter capsulatus is a versatile organism that can obtain cellular energy by several means, including the capture of light energy for photosynthesis as well as the use of light-independent respiration, in which molecular oxygen serves as a terminal electron acceptor. The SenC protein is required for optimal cytochrome c oxidase activity in aerobically grown R. capsulatus cells and is involved in the induction of structural polypeptides of the light-harvesting and reaction centre complexes [].; PDB: 2K6V_A 3ME8_A 3ME7_A 2GT6_A 2GQL_A 2GQK_A 2GGT_B 1WP0_C 2HRN_A 2GQM_A ....
Probab=98.80 E-value=4.2e-08 Score=79.63 Aligned_cols=78 Identities=21% Similarity=0.366 Sum_probs=63.6
Q ss_pred CCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcc-hHHHHHHHHHHHHHhhhc--CcEEEEEeCC----CH
Q 026909 72 VGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPC-CWELASALKESKARFDSA--GVKLIAVGVG----TP 144 (231)
Q Consensus 72 vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~-C~~~l~~L~~~~~~l~~~--gv~lv~Is~~----~~ 144 (231)
.....++|++.|.+|+++++.++.| +++|++|..+.||. |...+..|.++.+++.+. .+++|.|+.| ++
T Consensus 28 ~~~~~~~f~L~d~~G~~~~~~~~~G----k~~lv~F~yT~CpdvCp~~l~~l~~~~~~l~~~~~~v~~v~ISvDP~~DTp 103 (174)
T PF02630_consen 28 NPRIVPDFTLTDQDGKTVTLDDLKG----KWVLVFFGYTRCPDVCPTTLANLSQLQKQLGEEGKDVQFVFISVDPERDTP 103 (174)
T ss_dssp TSCSSST-EEEETTSSEEEGGGGTT----SEEEEEEE-TTSSSHHHHHHHHHHHHHHHHHHTTTTEEEEEEESSTTTC-H
T ss_pred CCccCCCcEEEcCCCCEecHHHhCC----CeEEEEEEEcCCCccCHHHHHHHHHHHHHhhhccCceEEEEEEeCCCCCCH
Confidence 3445789999999999999999954 67777777999998 999999999999988864 6899999976 46
Q ss_pred HHHHHHHhc
Q 026909 145 NKAQILAER 153 (231)
Q Consensus 145 ~~~~~~~~~ 153 (231)
+.+++|.+.
T Consensus 104 ~~L~~Y~~~ 112 (174)
T PF02630_consen 104 EVLKKYAKK 112 (174)
T ss_dssp HHHHHHHHC
T ss_pred HHHHHHHHh
Confidence 788898885
No 59
>KOG2792 consensus Putative cytochrome C oxidase assembly protein [Energy production and conversion]
Probab=98.79 E-value=2.5e-08 Score=84.21 Aligned_cols=58 Identities=19% Similarity=0.305 Sum_probs=50.0
Q ss_pred CCCCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcc-hHHHHHHHHHHHHHhhhc
Q 026909 68 FPANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPC-CWELASALKESKARFDSA 132 (231)
Q Consensus 68 ~~~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~-C~~~l~~L~~~~~~l~~~ 132 (231)
....+| .+|+|.|.+|+.++-.||.| +.+|+.|..++||. |..|+..|....+++++.
T Consensus 114 gk~~iG---GpF~L~d~~Gk~~te~df~G----kw~LiYFGFThCPDICPdELeKm~~~Vd~i~~~ 172 (280)
T KOG2792|consen 114 GKPAIG---GPFSLVDHDGKRVTEKDFLG----KWSLIYFGFTHCPDICPDELEKMSAVVDEIEAK 172 (280)
T ss_pred CCCccC---CceEEEecCCCeeccccccc----ceEEEEecccCCCCcChHHHHHHHHHHHHHhcc
Confidence 334455 68999999999999999965 68888888999998 999999999999998753
No 60
>TIGR02738 TrbB type-F conjugative transfer system pilin assembly thiol-disulfide isomerase TrbB. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold, contains a conserved pair of cysteines and has been shown to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. The protein is closely related to TraF (TIGR02739) which is somewhat longer, lacks the cysteine motif and is apparently not functional as a disulfide bond isomerase.
Probab=98.70 E-value=3.3e-08 Score=78.66 Aligned_cols=49 Identities=22% Similarity=0.466 Sum_probs=40.1
Q ss_pred CCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 85 AGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 85 ~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
.|+.+.++++ .|++||++|||+|++++|.|.++++++ ++.+++|+.|+.
T Consensus 43 ~G~~~~l~~~--------~lvnFWAsWCppCr~e~P~L~~l~~~~---~~~Vi~Vs~d~~ 91 (153)
T TIGR02738 43 QGRHANQDDY--------ALVFFYQSTCPYCHQFAPVLKRFSQQF---GLPVYAFSLDGQ 91 (153)
T ss_pred cchhhhcCCC--------EEEEEECCCChhHHHHHHHHHHHHHHc---CCcEEEEEeCCC
Confidence 4677776554 277788999999999999999998876 688999998764
No 61
>COG1999 Uncharacterized protein SCO1/SenC/PrrC, involved in biogenesis of respiratory and photosynthetic systems [General function prediction only]
Probab=98.67 E-value=1.2e-07 Score=79.03 Aligned_cols=71 Identities=25% Similarity=0.416 Sum_probs=59.1
Q ss_pred CeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcc-hHHHHHHHHHHHHHhh---hcCcEEEEEeCC----CHHHHHH
Q 026909 78 DFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPC-CWELASALKESKARFD---SAGVKLIAVGVG----TPNKAQI 149 (231)
Q Consensus 78 ~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~-C~~~l~~L~~~~~~l~---~~gv~lv~Is~~----~~~~~~~ 149 (231)
+|++.|.+|+++++.+++| ++.|+||-.+.||. |...+..|..+.+++. ...+++|.|++| +++.+++
T Consensus 49 ~f~l~d~~G~~~~~~~l~G----k~~lv~FgyT~CpdVCP~~l~~l~~~~~~l~~~~~~~v~vv~itvDPerDtp~~lk~ 124 (207)
T COG1999 49 DFELTDQDGKPFTLKDLKG----KPSLVFFGYTHCPDVCPTTLAELKALLKKLGEGEGDDVQVVFITVDPERDTPEVLKK 124 (207)
T ss_pred ceeeecCCCCEeeccccCC----CEEEEEeecCCCCccChHHHHHHHHHHHHhccccCCCEEEEEEEECCCCCCHHHHHH
Confidence 7999999999999999954 67777777999999 9999999999999888 455778888865 4556666
Q ss_pred HHh
Q 026909 150 LAE 152 (231)
Q Consensus 150 ~~~ 152 (231)
|.+
T Consensus 125 Y~~ 127 (207)
T COG1999 125 YAE 127 (207)
T ss_pred Hhc
Confidence 666
No 62
>cd02950 TxlA TRX-like protein A (TxlA) family; TxlA was originally isolated from the cyanobacterium Synechococcus. It is found only in oxygenic photosynthetic organisms. TRX is a small enzyme that participate in redox reactions, via the reversible oxidation of an active site dithiol present in a CXXC motif. Disruption of the txlA gene suggests that the protein is involved in the redox regulation of the structure and function of photosynthetic apparatus. The plant homolog (designated as HCF164) is localized in the chloroplast and is involved in the assembly of the cytochrome b6f complex, which takes a central position in photosynthetic electron transport.
Probab=98.55 E-value=7.2e-08 Score=75.69 Aligned_cols=85 Identities=15% Similarity=0.226 Sum_probs=58.4
Q ss_pred EEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH---HHHHHHhcCCC
Q 026909 80 SIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN---KAQILAERLPF 156 (231)
Q Consensus 80 ~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~---~~~~~~~~~~f 156 (231)
++.+.+++...+.+...+ |+.+|++||+.||+.|+..++.|.++++++.+ .+.++.|..+... .+++|. -..+
T Consensus 2 ~~~~~~~~~~~~~~a~~~--gk~vvV~F~A~WC~~C~~~~p~l~~l~~~~~~-~~~~v~v~vd~~~~~~~~~~~~-V~~i 77 (142)
T cd02950 2 SLEQLAASSTPPEVALSN--GKPTLVEFYADWCTVCQEMAPDVAKLKQKYGD-QVNFVMLNVDNPKWLPEIDRYR-VDGI 77 (142)
T ss_pred ChHHHhhccCCHHHHHhC--CCEEEEEEECCcCHHHHHhHHHHHHHHHHhcc-CeeEEEEEcCCcccHHHHHHcC-CCCC
Confidence 345566667777766543 47888888899999999999999999988864 4788888887542 122221 1345
Q ss_pred CCcceeecCcchH
Q 026909 157 PMDCLYADPDRKV 169 (231)
Q Consensus 157 p~~~vl~D~~~~~ 169 (231)
|.- ++.|+++++
T Consensus 78 Pt~-v~~~~~G~~ 89 (142)
T cd02950 78 PHF-VFLDREGNE 89 (142)
T ss_pred CEE-EEECCCCCE
Confidence 532 666766654
No 63
>cd02985 TRX_CDSP32 TRX family, chloroplastic drought-induced stress protein of 32 kD (CDSP32); CDSP32 is composed of two TRX domains, a C-terminal TRX domain which contains a redox active CXXC motif and an N-terminal TRX-like domain which contains an SXXS sequence instead of the redox active motif. CDSP32 is a stress-inducible TRX, i.e., it acts as a TRX by reducing protein disulfides and is induced by environmental and oxidative stress conditions. It plays a critical role in plastid defense against oxidative damage, a role related to its function as a physiological electron donor to BAS1, a plastidic 2-cys peroxiredoxin. Plants lacking CDSP32 exhibit decreased photosystem II photochemical efficiencies and chlorophyll retention compared to WT controls, as well as an increased proportion of BAS1 in its overoxidized monomeric form.
Probab=98.53 E-value=4.1e-07 Score=67.26 Aligned_cols=57 Identities=14% Similarity=0.105 Sum_probs=44.9
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhc---CCCCC
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAER---LPFPM 158 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~---~~fp~ 158 (231)
++++|+.|+++||+.|+.++|.|.++++++ .++.++.|+.+......++.++ ..+|.
T Consensus 15 ~k~vvv~F~a~wC~~C~~~~p~l~~la~~~--~~v~~~~vd~d~~~~~~~l~~~~~V~~~Pt 74 (103)
T cd02985 15 GRLVVLEFALKHSGPSVKIYPTMVKLSRTC--NDVVFLLVNGDENDSTMELCRREKIIEVPH 74 (103)
T ss_pred CCEEEEEEECCCCHhHHHHhHHHHHHHHHC--CCCEEEEEECCCChHHHHHHHHcCCCcCCE
Confidence 578888888999999999999999999988 4688899998765444455553 34553
No 64
>KOG2501 consensus Thioredoxin, nucleoredoxin and related proteins [General function prediction only]
Probab=98.47 E-value=3.7e-07 Score=72.23 Aligned_cols=104 Identities=14% Similarity=0.201 Sum_probs=76.9
Q ss_pred eEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcC--cEEEEEeCCC-HHHHHHHHhc--
Q 026909 79 FSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGT-PNKAQILAER-- 153 (231)
Q Consensus 79 f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~g--v~lv~Is~~~-~~~~~~~~~~-- 153 (231)
..+...+|..+...+... |++|.+.|.+.|||.|+...|.|.+.|+++++.+ +.||.||.|. .+.+.+|.+.
T Consensus 15 ~~l~~~~~~~~~~~~~l~---gKvV~lyFsA~wC~pCR~FTP~Lk~fYe~l~~~~~~fEVvfVS~D~~~~~~~~y~~~~~ 91 (157)
T KOG2501|consen 15 NRLRKQDGTEVLASEALQ---GKVVGLYFSAHWCPPCRDFTPILKDFYEELKDNAAPFEVVFVSSDRDEESLDEYMLEHH 91 (157)
T ss_pred CeeeccCCccchHhHhhC---CcEEEEEEEEEECCchhhCCchHHHHHHHHHhcCCceEEEEEecCCCHHHHHHHHHhcC
Confidence 667788888888885553 4899999999999999999999999999998754 8899999984 5667788773
Q ss_pred CC---CCCcceeecCcchHHHHhCCccccc-ceeeccChh
Q 026909 154 LP---FPMDCLYADPDRKVYNLLGLYHGVG-RTFFNPASA 189 (231)
Q Consensus 154 ~~---fp~~~vl~D~~~~~~~~~g~~~g~~-~~~~~p~~~ 189 (231)
.+ .| ...|-.+++.+.|+++. +. -....|.+.
T Consensus 92 ~~W~~iP---f~d~~~~~l~~ky~v~~-iP~l~i~~~dG~ 127 (157)
T KOG2501|consen 92 GDWLAIP---FGDDLIQKLSEKYEVKG-IPALVILKPDGT 127 (157)
T ss_pred CCeEEec---CCCHHHHHHHHhcccCc-CceeEEecCCCC
Confidence 22 24 23445577777888853 32 233456553
No 65
>PF00255 GSHPx: Glutathione peroxidase; InterPro: IPR000889 Glutathione peroxidase (GSHPx) (1.11.1.9 from EC) is an enzyme that catalyses the reduction of hydroxyperoxides by glutathione [, ]. Its main function is to protect against the damaging effect of endogenously formed hydroxyperoxides. In higher vertebrates, several forms of GSHPx are known, including a ubiquitous cytosolic form (GSHPx-1), a gastrointestinal cytosolic form (GSHPx-GI), a plasma secreted form (GSHPx-P), and an epididymal secretory form (GSHPx-EP). In addition to these characterised forms, the sequence of a protein of unknown function [] has been shown to be evolutionary related to those of GSHPx's. In filarial nematode parasites, the major soluble cuticular protein (gp29) is a secreted GSHPx, which may provide a mechanism of resistance to the immune reaction of the mammalian host by neutralising the products of the oxidative burst of leukocytes []. The Escherichia coli protein btuE, a periplasmic protein involved in vitamin B12 transport, is evolutionarily related to GSHPxs, although the significance of this relationship is unclear. The structure of bovine seleno-glutathione peroxidase has been determined []. The protein belongs to the alpha-beta class, with a 3 layer(aba) sandwich architecture. The catalyic site of GSHPx contains a conserved residue which is either a cysteine or, in many eukaryotic GSHPx, a selenocysteine []. ; GO: 0004602 glutathione peroxidase activity, 0006979 response to oxidative stress, 0055114 oxidation-reduction process; PDB: 3E0U_A 2VUP_A 2RM5_A 2RM6_A 3DWV_B 2P31_B 2R37_B 1GP1_B 2F8A_B 3KIJ_C ....
Probab=98.40 E-value=2.7e-06 Score=63.66 Aligned_cols=75 Identities=19% Similarity=0.348 Sum_probs=61.9
Q ss_pred CeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC--------CHHHHHH
Q 026909 78 DFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TPNKAQI 149 (231)
Q Consensus 78 ~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~--------~~~~~~~ 149 (231)
+|++.|.+|++++|++++|+ .++|+++ ++-|+.-. +..+|.++++++.+.|+.|+++-++ +.+.+++
T Consensus 3 df~~~~~~G~~v~l~~y~Gk---v~LIVNv-As~Cg~t~-qy~~L~~L~~ky~~~gl~ILaFPcnqFg~QEp~~~~ei~~ 77 (108)
T PF00255_consen 3 DFSAKDIDGKPVSLSKYKGK---VLLIVNV-ASKCGYTK-QYKQLNELYEKYKDKGLEILAFPCNQFGNQEPGSNEEIKE 77 (108)
T ss_dssp GSEEEBTTSSEEEGGGGTTS---EEEEEEE-ESSSTTHH-HHHHHHHHHHHHGGGTEEEEEEEBSTTTTTTSSCHHHHHH
T ss_pred ceeeeCCCCCEECHHHcCCC---EEEEEec-ccccCCcc-ccHHHHHHHHHHhcCCeEEEeeehHHhccccCCCHHHHHH
Confidence 68999999999999999775 5666666 99999998 9999999999999999999998764 3456777
Q ss_pred HHh---cCCCC
Q 026909 150 LAE---RLPFP 157 (231)
Q Consensus 150 ~~~---~~~fp 157 (231)
|+. ...||
T Consensus 78 ~~~~~~~~~F~ 88 (108)
T PF00255_consen 78 FCKEKFGVTFP 88 (108)
T ss_dssp HHCHCHT-SSE
T ss_pred HHHhccCCccc
Confidence 776 35677
No 66
>cd02948 TRX_NDPK TRX domain, TRX and NDP-kinase (NDPK) fusion protein family; most members of this group are fusion proteins which contain one redox active TRX domain containing a CXXC motif and three NDPK domains, and are characterized as intermediate chains (ICs) of axonemal outer arm dynein. Dyneins are molecular motors that generate force against microtubules to produce cellular movement, and are divided into two classes: axonemal and cytoplasmic. They are supramolecular complexes consisting of three protein groups classified according to size: dynein heavy, intermediate and light chains. Axonemal dyneins form two structures, the inner and outer arms, which are attached to doublet microtubules throughout the cilia and flagella. The human homolog is the sperm-specific Sptrx-2, presumed to be a component of the human sperm axoneme architecture. Included in this group is another human protein, TRX-like protein 2, a smaller fusion protein containing one TRX and one NDPK domain, which
Probab=98.34 E-value=1.3e-06 Score=64.35 Aligned_cols=51 Identities=14% Similarity=0.097 Sum_probs=41.8
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHH
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL 150 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~ 150 (231)
++.+++.|+++||+.|+..++.|.++++++++..+.++.|..++.+.+++|
T Consensus 17 ~~~vvv~F~a~wC~~Ck~~~p~l~~~~~~~~~~~~~~~~vd~d~~~~~~~~ 67 (102)
T cd02948 17 KGLTVVDVYQEWCGPCKAVVSLFKKIKNELGDDLLHFATAEADTIDTLKRY 67 (102)
T ss_pred CCeEEEEEECCcCHhHHHHhHHHHHHHHHcCCCcEEEEEEeCCCHHHHHHc
Confidence 367777888999999999999999999998766688888988866555555
No 67
>TIGR02740 TraF-like TraF-like protein. This protein is related to the F-type conjugation system pilus assembly proteins TraF (TIGR02739)and TrbB (TIGR02738) both of which exhibit a thioredoxin fold. The protein represented by this model has the same length and architecture as TraF, but lacks the CXXC-motif found in TrbB and believed to be responsible for the disulfide isomerase activity of that protein.
Probab=98.24 E-value=2.1e-06 Score=74.53 Aligned_cols=73 Identities=23% Similarity=0.372 Sum_probs=55.3
Q ss_pred CCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeecC
Q 026909 86 GEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADP 165 (231)
Q Consensus 86 G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~ 165 (231)
.+...+.++.+ +.+|++|++.||++|+.++|.|.++++++ |+.|++|+.|.... -.|| .+ +.
T Consensus 156 ~~~~~l~~l~~----k~~Lv~F~AswCp~C~~~~P~L~~la~~y---g~~Vi~VsvD~~~~-------~~fp---~~-~~ 217 (271)
T TIGR02740 156 QKDRVMKDLAK----KSGLFFFFKSDCPYCHQQAPILQAFEDRY---GIEVLPVSVDGGPL-------PGFP---NA-RP 217 (271)
T ss_pred HHHHHHHHhcC----CeEEEEEECCCCccHHHHhHHHHHHHHHc---CcEEEEEeCCCCcc-------ccCC---cc-cC
Confidence 34466777754 56777788999999999999999998876 58999999886421 2377 44 55
Q ss_pred cchHHHHhCCc
Q 026909 166 DRKVYNLLGLY 176 (231)
Q Consensus 166 ~~~~~~~~g~~ 176 (231)
+..+.+.||+.
T Consensus 218 d~~la~~~gV~ 228 (271)
T TIGR02740 218 DAGQAQQLKIR 228 (271)
T ss_pred CHHHHHHcCCC
Confidence 66788899984
No 68
>cd02999 PDI_a_ERp44_like PDIa family, endoplasmic reticulum protein 44 (ERp44)-like subfamily; composed of uncharacterized PDI-like eukaryotic proteins containing only one redox active TRX (a) domain with a CXXS motif, similar to ERp44. CXXS is still a redox active motif; however, the mixed disulfide formed with the substrate is more stable than those formed by CXXC motif proteins. PDI-related proteins are usually involved in the oxidative protein folding in the ER by acting as catalysts and folding assistants. ERp44 is involved in thiol-mediated retention in the ER.
Probab=98.22 E-value=3.9e-06 Score=61.79 Aligned_cols=42 Identities=12% Similarity=0.182 Sum_probs=36.1
Q ss_pred CCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC
Q 026909 99 EGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (231)
Q Consensus 99 ~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~ 142 (231)
+|+++|+.|++.||+.|+..+|.|.++++++. ++.++.|..+
T Consensus 17 ~g~~vlV~F~a~WC~~C~~~~p~l~~la~~~~--~~~~~~vd~~ 58 (100)
T cd02999 17 REDYTAVLFYASWCPFSASFRPHFNALSSMFP--QIRHLAIEES 58 (100)
T ss_pred CCCEEEEEEECCCCHHHHhHhHHHHHHHHHhc--cCceEEEECC
Confidence 46888888889999999999999999999885 4778888655
No 69
>cd02963 TRX_DnaJ TRX domain, DnaJ domain containing protein family; composed of uncharacterized proteins of about 500-800 amino acids, containing an N-terminal DnaJ domain followed by one redox active TRX domain. DnaJ is a member of the 40 kDa heat-shock protein (Hsp40) family of molecular chaperones, which regulate the activity of Hsp70s. TRX is involved in the redox regulation of many protein substrates through the reduction of disulfide bonds. TRX has been implicated to catalyse the reduction of Hsp33, a chaperone holdase that binds to unfolded protein intermediates. The presence of DnaJ and TRX domains in members of this family suggests that they could be involved in a redox-regulated chaperone network.
Probab=98.21 E-value=5.4e-06 Score=62.11 Aligned_cols=46 Identities=17% Similarity=0.284 Sum_probs=39.8
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
++++|+.|+++||+.|+...|.+.++.++++..++.++.|.++...
T Consensus 24 ~~~vlV~F~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~d~~~ 69 (111)
T cd02963 24 KKPYLIKITSDWCFSCIHIEPVWKEVIQELEPLGVGIATVNAGHER 69 (111)
T ss_pred CCeEEEEEECCccHhHHHhhHHHHHHHHHHHhcCceEEEEeccccH
Confidence 4788888889999999999999999999998777888888877543
No 70
>COG0386 BtuE Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=98.21 E-value=6.5e-06 Score=64.73 Aligned_cols=77 Identities=18% Similarity=0.331 Sum_probs=65.9
Q ss_pred cCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC--------CCHHHH
Q 026909 76 LGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--------GTPNKA 147 (231)
Q Consensus 76 ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~--------~~~~~~ 147 (231)
+-+|++.|.+|++++|+++.+ ++||+.=-++-|++-. +...|..+|++++++|+.|++.-+ ++.+.+
T Consensus 5 ~yd~~~~~~~G~~~~l~~~~G----kVlLIVNtASkCGfTp-QYegLe~Ly~ky~~~Gf~VLgFPcNQF~~QEPg~~eEI 79 (162)
T COG0386 5 IYDFSVKDIDGEPVSLSDYKG----KVLLIVNTASKCGFTP-QYEGLEALYKKYKDKGFEVLGFPCNQFGGQEPGSDEEI 79 (162)
T ss_pred cccceeeccCCCCccHHHhCC----cEEEEEEcccccCCcH-hHHHHHHHHHHHhhCCcEEEeccccccccCCCCCHHHH
Confidence 558999999999999999954 6777777799999988 778999999999999999999976 356789
Q ss_pred HHHHh---cCCCC
Q 026909 148 QILAE---RLPFP 157 (231)
Q Consensus 148 ~~~~~---~~~fp 157 (231)
++|++ ...||
T Consensus 80 ~~fC~~~YgVtFp 92 (162)
T COG0386 80 AKFCQLNYGVTFP 92 (162)
T ss_pred HHHHHhccCceee
Confidence 99988 47788
No 71
>cd03003 PDI_a_ERdj5_N PDIa family, N-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is comprised of the first TRX domain of ERdj5 located after the DnaJ domain at the N-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation.
Probab=98.03 E-value=2e-05 Score=57.60 Aligned_cols=44 Identities=20% Similarity=0.311 Sum_probs=37.4
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
+.++++|++.||+.|+...|.+.++.++++. .+.++.|.++...
T Consensus 19 ~~~~v~f~a~wC~~C~~~~p~~~~~a~~~~~-~~~~~~vd~~~~~ 62 (101)
T cd03003 19 EIWFVNFYSPRCSHCHDLAPTWREFAKEMDG-VIRIGAVNCGDDR 62 (101)
T ss_pred CeEEEEEECCCChHHHHhHHHHHHHHHHhcC-ceEEEEEeCCccH
Confidence 6777777799999999999999999999864 4888889988643
No 72
>cd02993 PDI_a_APS_reductase PDIa family, 5'-Adenylylsulfate (APS) reductase subfamily; composed of plant-type APS reductases containing a C-terminal redox active TRX domain and an N-terminal reductase domain which is part of a superfamily that includes N type ATP PPases. APS reductase catalyzes the reduction of activated sulfate to sulfite, a key step in the biosynthesis of sulfur-containing metabolites. Sulfate is first activated by ATP sulfurylase, forming APS, which can be phosphorylated to 3'-phosphoadenosine-5'-phosphosulfate (PAPS). Depending on the organism, either APS or PAPS can be used for sulfate reduction. Prokaryotes and fungi use PAPS, whereas plants use both APS and PAPS. Since plant-type APS reductase uses glutathione (GSH) as its electron donor, the C-terminal domain may function like glutaredoxin, a GSH-dependent member of the TRX superfamily. The flow of reducing equivalents goes from GSH - C-terminal TRX domain - N-terminal reductase domain - APS. Plant-type APS red
Probab=98.01 E-value=2e-05 Score=58.66 Aligned_cols=44 Identities=16% Similarity=0.341 Sum_probs=38.6
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
++.+|+.|++.||+.|+...+.+.++..++++.++.+..|.++.
T Consensus 21 ~k~vlv~f~a~wC~~C~~~~~~~~~la~~~~~~~~~~~~vd~d~ 64 (109)
T cd02993 21 NQSTLVVLYAPWCPFCQAMEASYEELAEKLAGSNVKVAKFNADG 64 (109)
T ss_pred CCCEEEEEECCCCHHHHHHhHHHHHHHHHhccCCeEEEEEECCc
Confidence 46777778899999999999999999999987779899998875
No 73
>cd02956 ybbN ybbN protein family; ybbN is a hypothetical protein containing a redox-inactive TRX-like domain. Its gene has been sequenced from several gammaproteobacteria and actinobacteria.
Probab=98.00 E-value=1.7e-05 Score=57.18 Aligned_cols=63 Identities=16% Similarity=0.081 Sum_probs=43.9
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeec
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYAD 164 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D 164 (231)
++.+|++|++.||+.|+...+.+.+++.++.. .+.++.|..+....+.+-..-..+|.- ++.+
T Consensus 12 ~~~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~l~~~~~i~~~Pt~-~~~~ 74 (96)
T cd02956 12 QVPVVVDFWAPRSPPSKELLPLLERLAEEYQG-QFVLAKVNCDAQPQIAQQFGVQALPTV-YLFA 74 (96)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhCC-cEEEEEEeccCCHHHHHHcCCCCCCEE-EEEe
Confidence 46788888899999999999999999988864 477788887764433222222445632 4445
No 74
>cd03000 PDI_a_TMX3 PDIa family, TMX3 subfamily; composed of eukaryotic proteins similar to human TMX3, a TRX related transmembrane protein containing one redox active TRX domain at the N-terminus and a classical ER retrieval sequence for type I transmembrane proteins at the C-terminus. The TMX3 transcript is found in a variety of tissues with the highest levels detected in skeletal muscle and the heart. In vitro, TMX3 showed oxidase activity albeit slightly lower than that of protein disulfide isomerase.
Probab=97.99 E-value=1.8e-05 Score=58.23 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=35.8
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcC--cEEEEEeCCCH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGTP 144 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~g--v~lv~Is~~~~ 144 (231)
+.+|++|+++||+.|+...|.|.+++++++..+ +.+..+.++..
T Consensus 16 ~~vlv~f~a~wC~~C~~~~p~l~~l~~~~~~~~~~~~~~~vd~~~~ 61 (104)
T cd03000 16 DIWLVDFYAPWCGHCKKLEPVWNEVGAELKSSGSPVRVGKLDATAY 61 (104)
T ss_pred CeEEEEEECCCCHHHHhhChHHHHHHHHHHhcCCcEEEEEEECccC
Confidence 577888889999999999999999999987644 66666776643
No 75
>PF05988 DUF899: Bacterial protein of unknown function (DUF899); InterPro: IPR010296 This family consists of uncharacterised bacterial proteins of unknown function which are thioredoxin-like.
Probab=97.98 E-value=3.4e-05 Score=63.87 Aligned_cols=101 Identities=18% Similarity=0.294 Sum_probs=79.4
Q ss_pred CCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEec-----CCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 70 ANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLR-----HFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 70 ~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r-----~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
+..+..-.+..+...+|+ ++|.||.+.+ ...+|+.|- ...||.|...+..+......|.+.++.+++|+....
T Consensus 40 LP~v~v~~~Y~F~g~~G~-v~L~dLF~Gr-~qLivyhfM~~p~~~~~C~gCs~~~D~~~g~l~hL~~rd~tfa~vSraP~ 117 (211)
T PF05988_consen 40 LPMVEVDKDYVFDGPDGP-VSLADLFEGR-RQLIVYHFMFGPDWDEGCPGCSFWADHIDGALRHLHARDTTFAVVSRAPL 117 (211)
T ss_pred CCCccCCCCeEEeCCCCc-ccHHHHcCCC-ceEEEEeeccCCCCCCCCCchhhhHhhhhhhHHHHHhCCceEEEEeCCCH
Confidence 333444456777777776 9999999873 355555443 468999999999998888889999999999999999
Q ss_pred HHHHHHHhc--CCCCCcceeecCcchHHHHhCC
Q 026909 145 NKAQILAER--LPFPMDCLYADPDRKVYNLLGL 175 (231)
Q Consensus 145 ~~~~~~~~~--~~fp~~~vl~D~~~~~~~~~g~ 175 (231)
+++.+|+++ ..|| .|+..+..+-..|++
T Consensus 118 ~~i~afk~rmGW~~p---w~Ss~gs~Fn~D~~~ 147 (211)
T PF05988_consen 118 EKIEAFKRRMGWTFP---WYSSYGSDFNYDFGV 147 (211)
T ss_pred HHHHHHHHhcCCCce---EEEcCCCcccccccc
Confidence 999999995 5577 888877777666665
No 76
>cd02994 PDI_a_TMX PDIa family, TMX subfamily; composed of proteins similar to the TRX-related human transmembrane protein, TMX. TMX is a type I integral membrane protein; the N-terminal redox active TRX domain is present in the endoplasmic reticulum (ER) lumen while the C-terminus is oriented towards the cytoplasm. It is expressed in many cell types and its active site motif (CPAC) is unique. In vitro, TMX reduces interchain disulfides of insulin and renatures inactive RNase containing incorrect disulfide bonds. The C. elegans homolog, DPY-11, is expressed only in the hypodermis and resides in the cytoplasm. It is required for body and sensory organ morphogeneis. Another uncharacterized TRX-related transmembrane protein, human TMX4, is included in the alignment. The active site sequence of TMX4 is CPSC.
Probab=97.97 E-value=2.8e-05 Score=56.72 Aligned_cols=65 Identities=18% Similarity=0.192 Sum_probs=44.2
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeecCcch
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRK 168 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~~~~ 168 (231)
+ +|+.|++.||+.|+...|.+.+++.+++..++.+..|.+++...+..-..-..+|. ++...++.
T Consensus 18 ~-~lv~f~a~wC~~C~~~~p~~~~l~~~~~~~~v~~~~vd~~~~~~~~~~~~i~~~Pt--~~~~~~g~ 82 (101)
T cd02994 18 E-WMIEFYAPWCPACQQLQPEWEEFADWSDDLGINVAKVDVTQEPGLSGRFFVTALPT--IYHAKDGV 82 (101)
T ss_pred C-EEEEEECCCCHHHHHHhHHHHHHHHhhccCCeEEEEEEccCCHhHHHHcCCcccCE--EEEeCCCC
Confidence 5 45777799999999999999999988776678888888775433221111245664 33344443
No 77
>cd02962 TMX2 TMX2 family; composed of proteins similar to human TMX2, a 372-amino acid TRX-related transmembrane protein, identified and characterized through the cloning of its cDNA from a human fetal library. It contains a TRX domain but the redox active CXXC motif is replaced with SXXC. Sequence analysis predicts that TMX2 may be a Type I membrane protein, with its C-terminal half protruding on the luminal side of the endoplasmic reticulum (ER). In addition to the TRX domain, transmembrane region and ER-retention signal, TMX2 also contains a Myb DNA-binding domain repeat signature and a dileucine motif in the tail.
Probab=97.92 E-value=2.8e-05 Score=61.78 Aligned_cols=47 Identities=15% Similarity=0.251 Sum_probs=40.6
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~ 146 (231)
++.+|+.|+++||+.|+...|.+.++.++++..+++++.|.++....
T Consensus 47 ~~~vvV~Fya~wC~~Ck~l~p~l~~la~~~~~~~v~f~~VDvd~~~~ 93 (152)
T cd02962 47 RVTWLVEFFTTWSPECVNFAPVFAELSLKYNNNNLKFGKIDIGRFPN 93 (152)
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHcccCCeEEEEEECCCCHH
Confidence 36788888899999999999999999999877789999999886543
No 78
>cd02959 ERp19 Endoplasmic reticulum protein 19 (ERp19) family; ERp19 is also known as ERp18, a protein located in the ER containing one redox active TRX domain. Denaturation studies indicate that the reduced form is more stable than the oxidized form, suggesting that the protein is involved in disulfide bond formation. In vitro, ERp19 has been shown to possess thiol-disulfide oxidase activity which is dependent on the presence of both active site cysteines. Although described as protein disulfide isomerase (PDI)-like, the protein does not complement for PDI activity. ERp19 shows a wide tissue distribution but is most abundant in liver, testis, heart and kidney.
Probab=97.91 E-value=2e-05 Score=59.75 Aligned_cols=71 Identities=21% Similarity=0.294 Sum_probs=45.8
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH--HHHHHHHhcC-CCCCcceeecCcchHHHH
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP--NKAQILAERL-PFPMDCLYADPDRKVYNL 172 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~--~~~~~~~~~~-~fp~~~vl~D~~~~~~~~ 172 (231)
++.||+.|++.||+.|+...+.+.+.....+ .+..++.|..+.. .....|...- .+|.- ++.|+++++-+.
T Consensus 19 ~kpVlV~F~a~WC~~C~~~~~~~~~~~~~~~-~~~~fv~v~vd~~~~~~~~~~~~~g~~vPt~-~f~~~~Gk~~~~ 92 (117)
T cd02959 19 GKPLMLLIHKTWCGACKALKPKFAESKEISE-LSHNFVMVNLEDDEEPKDEEFSPDGGYIPRI-LFLDPSGDVHPE 92 (117)
T ss_pred CCcEEEEEeCCcCHHHHHHHHHHhhhHHHHh-hcCcEEEEEecCCCCchhhhcccCCCccceE-EEECCCCCCchh
Confidence 4677788889999999999999988765443 3345566655432 2234443321 24532 888988887554
No 79
>cd02995 PDI_a_PDI_a'_C PDIa family, C-terminal TRX domain (a') subfamily; composed of the C-terminal redox active a' domains of PDI, ERp72, ERp57 (or ERp60) and EFP1. PDI, ERp72 and ERp57 are endoplasmic reticulum (ER)-resident eukaryotic proteins involved in oxidative protein folding. They are oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. PDI and ERp57 have the abb'a' domain structure (where a and a' are redox active TRX domains while b and b' are redox inactive TRX-like domains). PDI also contains an acidic region (c domain) after the a' domain that is absent in ERp57. ERp72 has an additional a domain at the N-terminus (a"abb'a' domain structure). ERp57 interacts with the lectin chaperones, calnexin and calreticu
Probab=97.90 E-value=3.1e-05 Score=56.24 Aligned_cols=58 Identities=16% Similarity=0.193 Sum_probs=42.9
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhh-cCcEEEEEeCCCHHHHHHHHhcCCCCC
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDS-AGVKLIAVGVGTPNKAQILAERLPFPM 158 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~-~gv~lv~Is~~~~~~~~~~~~~~~fp~ 158 (231)
++.++++|++.||+.|+...+.+.++.+.++. ..+.+..|.++..+....+. -..+|.
T Consensus 18 ~~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~~~~~~~~~-~~~~Pt 76 (104)
T cd02995 18 DKDVLVEFYAPWCGHCKALAPIYEELAEKLKGDDNVVIAKMDATANDVPSEFV-VDGFPT 76 (104)
T ss_pred CCcEEEEEECCCCHHHHHHhhHHHHHHHHhcCCCCEEEEEEeCcchhhhhhcc-CCCCCE
Confidence 36677777799999999999999999998876 46888888877643322221 256674
No 80
>cd02953 DsbDgamma DsbD gamma family; DsbD gamma is the C-terminal periplasmic domain of the bacterial protein DsbD. It contains a CXXC motif in a TRX fold and shuttles the reducing potential from the membrane domain (DsbD beta) to the N-terminal periplasmic domain (DsbD alpha). DsbD beta, a transmembrane domain comprising of eight helices, acquires its reducing potential from the cytoplasmic thioredoxin. DsbD alpha transfers the acquired reducing potential from DsbD gamma to target proteins such as the periplasmic protein disulphide isomerases, DsbC and DsbG. This flow of reducing potential from the cytoplasm through DsbD allows DsbC and DsbG to act as isomerases in the oxidizing environment of the bacterial periplasm. DsbD also transfers reducing potential from the cytoplasm to specific reductases in the periplasm which are involved in the maturation of cytochromes.
Probab=97.90 E-value=5e-05 Score=55.73 Aligned_cols=68 Identities=19% Similarity=0.217 Sum_probs=45.0
Q ss_pred CcEEEEEecCCCCcchHHHHHHH---HHHHHHhhhcCcEEEEEeCCCH-HHHHHHHhc---CCCCCcceeecC-cchH
Q 026909 100 GVAVVALLRHFGCPCCWELASAL---KESKARFDSAGVKLIAVGVGTP-NKAQILAER---LPFPMDCLYADP-DRKV 169 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L---~~~~~~l~~~gv~lv~Is~~~~-~~~~~~~~~---~~fp~~~vl~D~-~~~~ 169 (231)
++.+|+.|++.||+.|+...+.+ .++.+.+++ ++.++.|..+.. ....++.++ ..+|.- ++.++ ++..
T Consensus 11 ~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~~-~~~~~~vd~~~~~~~~~~~~~~~~i~~~Pti-~~~~~~~g~~ 86 (104)
T cd02953 11 GKPVFVDFTADWCVTCKVNEKVVFSDPEVQAALKK-DVVLLRADWTKNDPEITALLKRFGVFGPPTY-LFYGPGGEPE 86 (104)
T ss_pred CCeEEEEEEcchhHHHHHHHHHhcCCHHHHHHHhC-CeEEEEEecCCCCHHHHHHHHHcCCCCCCEE-EEECCCCCCC
Confidence 47777788899999999988877 466666765 788888887642 223445443 345532 55565 4543
No 81
>cd02951 SoxW SoxW family; SoxW is a bacterial periplasmic TRX, containing a redox active CXXC motif, encoded by a genetic locus (sox operon) involved in thiosulfate oxidation. Sulfur bacteria oxidize sulfur compounds to provide reducing equivalents for carbon dioxide fixation during autotrophic growth and the respiratory electron transport chain. It is unclear what the role of SoxW is, since it has been found to be dispensable in the oxidation of thiosulfate to sulfate. SoxW is specifically kept in the reduced state by SoxV, which is essential in thiosulfate oxidation.
Probab=97.88 E-value=3.5e-05 Score=58.58 Aligned_cols=44 Identities=20% Similarity=0.405 Sum_probs=33.4
Q ss_pred C-cEEEEEecCCCCcchHHHHHHHH---HHHHHhhhcCcEEEEEeCCCH
Q 026909 100 G-VAVVALLRHFGCPCCWELASALK---ESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 100 g-~~vL~f~r~~~Cp~C~~~l~~L~---~~~~~l~~~gv~lv~Is~~~~ 144 (231)
+ +.+|++|+++||++|+...+.+. ++.+.++ .++.++.|+.++.
T Consensus 13 ~~k~vlv~f~a~wC~~C~~~~~~~~~~~~~~~~~~-~~~~~~~i~~d~~ 60 (125)
T cd02951 13 GKKPLLLLFSQPGCPYCDKLKRDYLNDPAVQAYIR-AHFVVVYINIDGD 60 (125)
T ss_pred CCCcEEEEEeCCCCHHHHHHHHHhcCcHHHHHHHH-hheEEEEEEccCC
Confidence 5 67888888999999999998875 4445554 4677888887653
No 82
>cd02997 PDI_a_PDIR PDIa family, PDIR subfamily; composed of proteins similar to human PDIR (for Protein Disulfide Isomerase Related). PDIR is composed of three redox active TRX (a) domains and an N-terminal redox inactive TRX-like (b) domain. Similar to PDI, it is involved in oxidative protein folding in the endoplasmic reticulum (ER) through its isomerase and chaperone activities. These activities are lower compared to PDI, probably due to PDIR acting only on a subset of proteins. PDIR is preferentially expressed in cells actively secreting proteins and its expression is induced by stress. Similar to PDI, the isomerase and chaperone activities of PDIR are independent; CXXC mutants lacking isomerase activity retain chaperone activity.
Probab=97.88 E-value=3.8e-05 Score=55.84 Aligned_cols=43 Identities=14% Similarity=0.219 Sum_probs=34.7
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhh-cCcEEEEEeCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDS-AGVKLIAVGVGT 143 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~-~gv~lv~Is~~~ 143 (231)
+.+++.|++.||+.|+...+.+.++.+.+.+ ..+.++.|.++.
T Consensus 18 ~~~~v~f~a~wC~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 61 (104)
T cd02997 18 KHVLVMFYAPWCGHCKKMKPEFTKAATELKEDGKGVLAAVDCTK 61 (104)
T ss_pred CCEEEEEECCCCHHHHHhCHHHHHHHHHHhhCCceEEEEEECCC
Confidence 5677777799999999999999999988874 346666677665
No 83
>cd02952 TRP14_like Human TRX-related protein 14 (TRP14)-like family; composed of proteins similar to TRP14, a 14kD cytosolic protein that shows disulfide reductase activity in vitro with a different substrate specificity compared with another human cytosolic protein, TRX1. TRP14 catalyzes the reduction of small disulfide-containing peptides but does not reduce disulfides of ribonucleotide reductase, peroxiredoxin and methionine sulfoxide reductase, which are TRX1 substrates. TRP14 also plays a role in tumor necrosis factor (TNF)-alpha signaling pathways, distinct from that of TRX1. Its depletion promoted TNF-alpha induced activation of c-Jun N-terminal kinase and mitogen-activated protein kinases.
Probab=97.87 E-value=3.8e-05 Score=58.52 Aligned_cols=61 Identities=20% Similarity=0.295 Sum_probs=45.9
Q ss_pred CcEEEEEecC-------CCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeecCcchHHHH
Q 026909 100 GVAVVALLRH-------FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVYNL 172 (231)
Q Consensus 100 g~~vL~f~r~-------~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~ 172 (231)
|+.+++.|++ .||+.|+...|.|.++.++++ .++.++-|..++.. ..-|++..+...
T Consensus 21 ~~~vvV~F~A~~~~~~~~WC~pCr~~~P~l~~l~~~~~-~~v~fv~Vdvd~~~---------------~w~d~~~~~~~~ 84 (119)
T cd02952 21 GKPIFILFYGDKDPDGQSWCPDCVKAEPVVREALKAAP-EDCVFIYCDVGDRP---------------YWRDPNNPFRTD 84 (119)
T ss_pred CCeEEEEEEccCCCCCCCCCHhHHhhchhHHHHHHHCC-CCCEEEEEEcCCcc---------------cccCcchhhHhc
Confidence 3566666668 999999999999999998886 35888889887643 344666666666
Q ss_pred hCCc
Q 026909 173 LGLY 176 (231)
Q Consensus 173 ~g~~ 176 (231)
+++.
T Consensus 85 ~~I~ 88 (119)
T cd02952 85 PKLT 88 (119)
T ss_pred cCcc
Confidence 6665
No 84
>cd03006 PDI_a_EFP1_N PDIa family, N-terminal EFP1 subfamily; EFP1 is a binding partner protein of thyroid oxidase (ThOX), also called Duox. ThOX proteins are responsible for the generation of hydrogen peroxide, a crucial substrate of thyroperoxidase, which functions to iodinate thyroglobulin and synthesize thyroid hormones. EFP1 was isolated through a yeast two-hybrid method using the EF-hand fragment of dog Duox1 as a bait. It could be one of the partners in the assembly of a multiprotein complex constituting the thyroid hydrogen peroxide generating system. EFP1 contains two TRX domains related to the redox active TRX domains of protein disulfide isomerase (PDI). This subfamily is composed of the N-terminal TRX domain of EFP1, which contains a CXXS sequence in place of the typical CXXC motif, similar to ERp44. The CXXS motif allows the formation of stable mixed disulfides, crucial for the ER-retention function of ERp44.
Probab=97.82 E-value=4.8e-05 Score=57.41 Aligned_cols=45 Identities=7% Similarity=0.023 Sum_probs=37.7
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~ 146 (231)
+.+|+.|+++||+.|+...|.+.++.+++++. +.++.|.++....
T Consensus 30 ~~vlV~FyA~WC~~Ck~l~p~~~~la~~~~~~-v~~~~Vd~d~~~~ 74 (113)
T cd03006 30 EVSLVMYYAPWDAQSQAARQEFEQVAQKLSDQ-VLFVAINCWWPQG 74 (113)
T ss_pred CEEEEEEECCCCHHHHHHHHHHHHHHHHhcCC-eEEEEEECCCChH
Confidence 67777788999999999999999999998653 7788898875543
No 85
>cd03002 PDI_a_MPD1_like PDI family, MPD1-like subfamily; composed of eukaryotic proteins similar to Saccharomyces cerevisiae MPD1 protein, which contains a single redox active TRX domain located at the N-terminus, and an ER retention signal at the C-terminus indicative of an ER-resident protein. MPD1 has been shown to suppress the maturation defect of carboxypeptidase Y caused by deletion of the yeast PDI1 gene. Other characterized members of this subfamily include the Aspergillus niger prpA protein and Giardia PDI-1. PrpA is non-essential to strain viability, however, its transcript level is induced by heterologous protein expression suggesting a possible role in oxidative protein folding during high protein production. Giardia PDI-1 has the ability to refold scrambled RNase and exhibits transglutaminase activity.
Probab=97.81 E-value=6.9e-05 Score=55.16 Aligned_cols=43 Identities=16% Similarity=0.220 Sum_probs=36.3
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
++.+|+.|++.||+.|+...+.+.++.+++.. .+.++.|.++.
T Consensus 18 ~~~~lv~f~a~wC~~C~~~~~~~~~~a~~~~~-~~~~~~v~~~~ 60 (109)
T cd03002 18 NYTTLVEFYAPWCGHCKNLKPEYAKAAKELDG-LVQVAAVDCDE 60 (109)
T ss_pred CCeEEEEEECCCCHHHHhhChHHHHHHHHhcC-CceEEEEecCc
Confidence 46677777799999999999999999988863 57888898876
No 86
>cd02949 TRX_NTR TRX domain, novel NADPH thioredoxin reductase (NTR) family; composed of fusion proteins found only in oxygenic photosynthetic organisms containing both TRX and NTR domains. The TRX domain functions as a protein disulfide reductase via the reversible oxidation of an active center dithiol present in a CXXC motif, while the NTR domain functions as a reductant to oxidized TRX. The fusion protein is bifunctional, showing both TRX and NTR activities, but it is not an independent NTR/TRX system. In plants, the protein is found exclusively in shoots and mature leaves and is localized in the chloroplast. It is involved in plant protection against oxidative stress.
Probab=97.79 E-value=8.6e-05 Score=53.92 Aligned_cols=45 Identities=18% Similarity=0.382 Sum_probs=37.6
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
+++++++|++.||+.|+...+.+.++.+++.. ++.++.|..+...
T Consensus 13 ~~~vlv~f~a~~C~~C~~~~~~l~~l~~~~~~-~v~~~~id~d~~~ 57 (97)
T cd02949 13 DRLILVLYTSPTCGPCRTLKPILNKVIDEFDG-AVHFVEIDIDEDQ 57 (97)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHHHHhCC-ceEEEEEECCCCH
Confidence 47888888899999999999999999888864 5788888877543
No 87
>PRK09381 trxA thioredoxin; Provisional
Probab=97.79 E-value=6.9e-05 Score=55.40 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=37.5
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~ 146 (231)
+.+++.|++.|||.|+...|.|.++++++.. ++.++.|..+....
T Consensus 22 ~~vvv~f~~~~C~~C~~~~p~~~~l~~~~~~-~~~~~~vd~~~~~~ 66 (109)
T PRK09381 22 GAILVDFWAEWCGPCKMIAPILDEIADEYQG-KLTVAKLNIDQNPG 66 (109)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHhCC-CcEEEEEECCCChh
Confidence 5677777799999999999999999999865 58888898876443
No 88
>cd03004 PDI_a_ERdj5_C PDIa family, C-terminal ERdj5 subfamily; ERdj5, also known as JPDI and macrothioredoxin, is a protein containing an N-terminal DnaJ domain and four redox active TRX domains. This subfamily is composed of the three TRX domains located at the C-terminal half of the protein. ERdj5 is a ubiquitous protein localized in the endoplasmic reticulum (ER) and is abundant in secretory cells. It's transcription is induced during ER stress. It interacts with BiP through its DnaJ domain in an ATP-dependent manner. BiP, an ER-resident member of the Hsp70 chaperone family, functions in ER-associated degradation and protein translocation. Also included in the alignment is the single complete TRX domain of an uncharacterized protein from Tetraodon nigroviridis, which also contains a DnaJ domain at its N-terminus.
Probab=97.78 E-value=8.3e-05 Score=54.44 Aligned_cols=45 Identities=16% Similarity=0.142 Sum_probs=37.3
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~ 146 (231)
+.+++.|++.||+.|+...|.+.++.+++. .++.+..|.++....
T Consensus 20 ~~v~v~f~a~wC~~C~~~~p~~~~~~~~~~-~~~~~~~vd~~~~~~ 64 (104)
T cd03004 20 EPWLVDFYAPWCGPCQALLPELRKAARALK-GKVKVGSVDCQKYES 64 (104)
T ss_pred CeEEEEEECCCCHHHHHHHHHHHHHHHHhc-CCcEEEEEECCchHH
Confidence 577777889999999999999999999885 358888898886543
No 89
>PRK10996 thioredoxin 2; Provisional
Probab=97.77 E-value=3.4e-05 Score=60.20 Aligned_cols=66 Identities=15% Similarity=0.212 Sum_probs=45.6
Q ss_pred eccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCC
Q 026909 90 LFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPM 158 (231)
Q Consensus 90 ~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~ 158 (231)
.+.++..+ ++.++++|++.||+.|+...+.|.+++.++.. ++.++.|..++...+..-..-.++|.
T Consensus 44 ~~~~~i~~--~k~vvv~F~a~wC~~C~~~~~~l~~l~~~~~~-~v~~~~vd~~~~~~l~~~~~V~~~Pt 109 (139)
T PRK10996 44 TLDKLLQD--DLPVVIDFWAPWCGPCRNFAPIFEDVAAERSG-KVRFVKVNTEAERELSARFRIRSIPT 109 (139)
T ss_pred HHHHHHhC--CCeEEEEEECCCCHHHHHHHHHHHHHHHHhCC-CeEEEEEeCCCCHHHHHhcCCCccCE
Confidence 44444433 47788888899999999999999999888764 58888888775443322222245664
No 90
>KOG1651 consensus Glutathione peroxidase [Posttranslational modification, protein turnover, chaperones]
Probab=97.75 E-value=0.0001 Score=58.73 Aligned_cols=79 Identities=19% Similarity=0.251 Sum_probs=63.5
Q ss_pred CcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC--------CHHH
Q 026909 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--------TPNK 146 (231)
Q Consensus 75 ~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~--------~~~~ 146 (231)
.+=+|++.|.+|+.|+|+.++| +++|+.=-++.|++-...-.+|.++++++++.|+.|++.-++ +.+.
T Consensus 13 siydf~~~d~~G~~v~l~~yrG----kV~LiVNVAS~Cg~T~~~Y~~l~~L~~ky~~~Gl~ILaFPCNQFg~QEp~~n~E 88 (171)
T KOG1651|consen 13 SIYDFSAKDLDGEYVSLSQYRG----KVVLIVNVASQCGLTESQYTELNELYEKYKDQGLEILAFPCNQFGNQEPGSNEE 88 (171)
T ss_pred ceeeeEEecCCCCCccHHHhCC----eEEEEEEcccccccchhcchhHHHHHHHHhhCCeEEEEeccccccCcCCCCcHH
Confidence 3568999999999999999966 555555559999999877779999999999999999998764 3345
Q ss_pred HHHHHh-c--CCCC
Q 026909 147 AQILAE-R--LPFP 157 (231)
Q Consensus 147 ~~~~~~-~--~~fp 157 (231)
+..|.. + ..||
T Consensus 89 i~~f~~~r~~~~f~ 102 (171)
T KOG1651|consen 89 ILNFVKVRYGAEFP 102 (171)
T ss_pred HHHHHHhccCCCCc
Confidence 677765 3 5566
No 91
>cd03005 PDI_a_ERp46 PDIa family, endoplasmic reticulum protein 46 (ERp46) subfamily; ERp46 is an ER-resident protein containing three redox active TRX domains. Yeast complementation studies show that ERp46 can substitute for protein disulfide isomerase (PDI) function in vivo. It has been detected in many tissues, however, transcript and protein levels do not correlate in all tissues, suggesting regulation at a posttranscriptional level. An identical protein, named endoPDI, has been identified as an endothelial PDI that is highly expressed in the endothelium of tumors and hypoxic lesions. It has a protective effect on cells exposed to hypoxia.
Probab=97.74 E-value=8.8e-05 Score=53.78 Aligned_cols=43 Identities=19% Similarity=0.260 Sum_probs=35.7
Q ss_pred EEEEecCCCCcchHHHHHHHHHHHHHhhh--cCcEEEEEeCCCHH
Q 026909 103 VVALLRHFGCPCCWELASALKESKARFDS--AGVKLIAVGVGTPN 145 (231)
Q Consensus 103 vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~--~gv~lv~Is~~~~~ 145 (231)
+++.|++.||+.|+..+|.+.+++++++. ..+.++.|.++...
T Consensus 19 ~lv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~~~~~~vd~~~~~ 63 (102)
T cd03005 19 HFVKFFAPWCGHCKRLAPTWEQLAKKFNNENPSVKIAKVDCTQHR 63 (102)
T ss_pred EEEEEECCCCHHHHHhCHHHHHHHHHHhccCCcEEEEEEECCCCh
Confidence 66667799999999999999999999876 46888888877544
No 92
>cd02996 PDI_a_ERp44 PDIa family, endoplasmic reticulum protein 44 (ERp44) subfamily; ERp44 is an ER-resident protein, induced during stress, involved in thiol-mediated ER retention. It contains an N-terminal TRX domain, similar to that of PDIa, with a CXFS motif followed by two redox inactive TRX-like domains, homologous to the b and b' domains of PDI. The CXFS motif in the N-terminal domain allows ERp44 to form stable reversible mixed disulfides with its substrates. Through this activity, ERp44 mediates the ER localization of Ero1alpha, a protein that oxidizes protein disulfide isomerases into their active form. ERp44 also prevents the secretion of unassembled cargo protein with unpaired cysteines. It also modulates the activity of inositol 1,4,5-triphosphate type I receptor (IP3R1), an intracellular channel protein that mediates calcium release from the ER to the cytosol.
Probab=97.74 E-value=0.00014 Score=53.70 Aligned_cols=45 Identities=16% Similarity=0.084 Sum_probs=35.1
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhc-----CcEEEEEeCCCH
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSA-----GVKLIAVGVGTP 144 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~-----gv~lv~Is~~~~ 144 (231)
++.+|++|++.||+.|+...|.+.+++.++++. .+.++.|.++..
T Consensus 18 ~~~vlv~F~a~wC~~C~~~~p~~~~~a~~~~~~~~~~~~~~~~~vd~d~~ 67 (108)
T cd02996 18 AELVLVNFYADWCRFSQMLHPIFEEAAAKIKEEFPDAGKVVWGKVDCDKE 67 (108)
T ss_pred CCEEEEEEECCCCHHHHhhHHHHHHHHHHHhhccCCCCcEEEEEEECCCC
Confidence 367788888999999999999999998877532 366666776643
No 93
>cd02954 DIM1 Dim1 family; Dim1 is also referred to as U5 small nuclear ribonucleoprotein particle (snRNP)-specific 15kD protein. It is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 interacts with multiple splicing-associated proteins, suggesting that it functions at multiple control points in the splicing of pre-mRNA as part of a large spliceosomal complex involving many protein-protein interactions. U5 snRNP contains seven core proteins (common to all snRNPs) and nine U5-specific proteins, one of which is Dim1. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif. It is essential for G2/M phase transition, as a consequence to its role in pre-mRNA splicing.
Probab=97.74 E-value=0.00011 Score=55.61 Aligned_cols=45 Identities=13% Similarity=0.149 Sum_probs=36.9
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~ 146 (231)
+.+|+.|++.||++|+...|.|.++.+++.+. +.++-|..+....
T Consensus 15 ~~vVV~F~A~WCgpCk~m~P~le~la~~~~~~-v~f~kVDvD~~~~ 59 (114)
T cd02954 15 KVVVIRFGRDWDPVCMQMDEVLAKIAEDVSNF-AVIYLVDIDEVPD 59 (114)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHccCc-eEEEEEECCCCHH
Confidence 67788888999999999999999999988533 6788888876443
No 94
>PTZ00051 thioredoxin; Provisional
Probab=97.68 E-value=0.00014 Score=52.52 Aligned_cols=42 Identities=17% Similarity=0.222 Sum_probs=34.4
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
+.++++|++.||+.|+...+.|.++..++. ++.++.|..+..
T Consensus 19 ~~vli~f~~~~C~~C~~~~~~l~~l~~~~~--~~~~~~vd~~~~ 60 (98)
T PTZ00051 19 ELVIVDFYAEWCGPCKRIAPFYEECSKEYT--KMVFVKVDVDEL 60 (98)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHcC--CcEEEEEECcch
Confidence 677777779999999999999999888764 577888877643
No 95
>cd02986 DLP Dim1 family, Dim1-like protein (DLP) subfamily; DLP is a novel protein which shares 38% sequence identity to Dim1. Like Dim1, it is also implicated in pre-mRNA splicing and cell cycle progression. DLP is located in the nucleus and has been shown to interact with the U5 small nuclear ribonucleoprotein particle (snRNP)-specific 102kD protein (or Prp6). Dim1 protein, also known as U5 snRNP-specific 15kD protein is a component of U5 snRNP, which pre-assembles with U4/U6 snRNPs to form a [U4/U6:U5] tri-snRNP complex required for pre-mRNA splicing. Dim1 adopts a thioredoxin fold but does not contain the redox active CXXC motif.
Probab=97.64 E-value=0.00016 Score=54.57 Aligned_cols=46 Identities=13% Similarity=0.148 Sum_probs=38.2
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~ 146 (231)
+++|++.|.+.||++|+..-|-|.++.+++++. +.++-|..|....
T Consensus 14 ~klVVVdF~a~WC~pCk~mdp~l~ela~~~~~~-~~f~kVDVDev~d 59 (114)
T cd02986 14 EKVLVLRFGRDEDAVCLQLDDILSKTSHDLSKM-ASIYLVDVDKVPV 59 (114)
T ss_pred CCEEEEEEeCCCChhHHHHHHHHHHHHHHccCc-eEEEEEeccccHH
Confidence 378888888999999999999999999998543 7788888776443
No 96
>cd02998 PDI_a_ERp38 PDIa family, endoplasmic reticulum protein 38 (ERp38) subfamily; composed of proteins similar to the P5-like protein first isolated from alfalfa, which contains two redox active TRX (a) domains at the N-terminus, like human P5, and a C-terminal domain with homology to the C-terminal domain of ERp29, unlike human P5. The cDNA clone of this protein (named G1) was isolated from an alfalfa cDNA library by screening with human protein disulfide isomerase (PDI) cDNA. The G1 protein is constitutively expressed in all major organs of the plant and its expression is induced by treatment with tunicamycin, indicating that it may be a glucose-regulated protein. The G1 homolog in the eukaryotic social amoeba Dictyostelium discoideum is also described as a P5-like protein, which is located in the endoplasmic reticulum (ER) despite the absence of an ER-retrieval signal. G1 homologs from Aspergillus niger and Neurospora crassa have also been characterized, and are named TIGA and ER
Probab=97.62 E-value=0.00017 Score=52.27 Aligned_cols=44 Identities=20% Similarity=0.223 Sum_probs=36.2
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhh-hcCcEEEEEeCCC
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFD-SAGVKLIAVGVGT 143 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~-~~gv~lv~Is~~~ 143 (231)
++.+++.|++.||+.|+...+.+.++..+++ ..++.++.|..+.
T Consensus 18 ~~~~~v~f~a~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~id~~~ 62 (105)
T cd02998 18 KKDVLVEFYAPWCGHCKNLAPEYEKLAAVFANEDDVVIAKVDADE 62 (105)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhCCCCCEEEEEEECCC
Confidence 3567777779999999999999999999887 3457777788766
No 97
>TIGR01126 pdi_dom protein disulfide-isomerase domain. This model describes a domain of eukaryotic protein disulfide isomerases, generally found in two copies. The high cutoff for total score reflects the expectation of finding both copies. The domain is similar to thioredoxin but the redox-active disulfide region motif is APWCGHCK.
Probab=97.62 E-value=0.00013 Score=52.74 Aligned_cols=68 Identities=15% Similarity=0.135 Sum_probs=44.7
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcC-cEEEEEeCCCHHHHHHHHhcCCCCCcceeecCcch
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAG-VKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRK 168 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~g-v~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~~~~ 168 (231)
++++++.|+..||+.|+...+.+.++.+.++..+ +.++.|.++....+.+-..-..+|.- ++.+.++.
T Consensus 13 ~~~~~i~f~~~~C~~c~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~i~~~P~~-~~~~~~~~ 81 (102)
T TIGR01126 13 NKDVLVEFYAPWCGHCKNLAPEYEKLAKELKGDPDIVLAKVDATAEKDLASRFGVSGFPTI-KFFPKGKK 81 (102)
T ss_pred CCcEEEEEECCCCHHHHhhChHHHHHHHHhccCCceEEEEEEccchHHHHHhCCCCcCCEE-EEecCCCc
Confidence 4677777779999999999999999988887654 77777776543322211112345532 45565554
No 98
>cd02984 TRX_PICOT TRX domain, PICOT (for PKC-interacting cousin of TRX) subfamily; PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT contains an N-terminal TRX-like domain, which does not contain the catalytic CXXC motif, followed by one to three glutaredoxin domains. The TRX-like domain is required for interaction with PKC theta. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli.
Probab=97.60 E-value=0.00022 Score=51.27 Aligned_cols=42 Identities=10% Similarity=0.074 Sum_probs=34.4
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
+.++++|++.||+.|+...+.|.++..++ ..++.++.|..+.
T Consensus 15 ~~v~v~f~~~~C~~C~~~~~~l~~l~~~~-~~~i~~~~vd~~~ 56 (97)
T cd02984 15 KLLVLHFWAPWAEPCKQMNQVFEELAKEA-FPSVLFLSIEAEE 56 (97)
T ss_pred CEEEEEEECCCCHHHHHHhHHHHHHHHHh-CCceEEEEEcccc
Confidence 67777777999999999999999998887 4467788887654
No 99
>PHA02278 thioredoxin-like protein
Probab=97.60 E-value=0.00016 Score=53.63 Aligned_cols=43 Identities=14% Similarity=0.222 Sum_probs=33.2
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
++.+|+.|++.||++|+...|.|.++.+++. ..+.++-|..|.
T Consensus 14 ~~~vvV~F~A~WCgpCk~m~p~l~~l~~~~~-~~~~~~~vdvd~ 56 (103)
T PHA02278 14 KKDVIVMITQDNCGKCEILKSVIPMFQESGD-IKKPILTLNLDA 56 (103)
T ss_pred CCcEEEEEECCCCHHHHhHHHHHHHHHhhhc-CCceEEEEECCc
Confidence 3667777779999999999999999877643 235677777664
No 100
>TIGR01295 PedC_BrcD bacteriocin transport accessory protein, putative. This model describes a small family of proteins believed to aid in the export of various class II bacteriocins, which are ribosomally-synthesized, non-lantibiotic bacterial peptide antibiotics. Members of this family are found in operons for pediocin PA-1 from Pediococcus acidilactici and brochocin-C from Brochothrix campestris.
Probab=97.55 E-value=0.00023 Score=54.33 Aligned_cols=40 Identities=13% Similarity=0.285 Sum_probs=33.4
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~ 142 (231)
+..++++|.+.|||+|+...|.|.++.++ .++.+.-|..+
T Consensus 23 ~~~~iv~f~~~~Cp~C~~~~P~l~~~~~~---~~~~~y~vdvd 62 (122)
T TIGR01295 23 KETATFFIGRKTCPYCRKFSGTLSGVVAQ---TKAPIYYIDSE 62 (122)
T ss_pred CCcEEEEEECCCChhHHHHhHHHHHHHHh---cCCcEEEEECC
Confidence 46777778899999999999999999876 34678888877
No 101
>KOG0907 consensus Thioredoxin [Posttranslational modification, protein turnover, chaperones]
Probab=97.55 E-value=0.00019 Score=53.62 Aligned_cols=41 Identities=20% Similarity=0.292 Sum_probs=36.3
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
+.+++.|.++||++|+...|.+.++..++.+ +.++-|.+|.
T Consensus 22 kliVvdF~a~wCgPCk~i~P~~~~La~~y~~--v~Flkvdvde 62 (106)
T KOG0907|consen 22 KLVVVDFYATWCGPCKAIAPKFEKLAEKYPD--VVFLKVDVDE 62 (106)
T ss_pred CeEEEEEECCCCcchhhhhhHHHHHHHHCCC--CEEEEEeccc
Confidence 6777777799999999999999999999976 8888888776
No 102
>PF00085 Thioredoxin: Thioredoxin; InterPro: IPR013766 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of two cysteine thiol groups to a disulphide, accompanied by the transfer of two electrons and two protons. The net result is the covalent interconversion of a disulphide and a dithiol. In the NADPH-dependent protein disulphide reduction, thioredoxin reductase (TR) catalyses the reduction of oxidised thioredoxin (trx) by NADPH using FAD and its redox-active disulphide; reduced thioredoxin then directly reduces the disulphide in the substrate protein []. Thioredoxin is present in prokaryotes and eukaryotes and the sequence around the redox-active disulphide bond is well conserved. All thioredoxins contain a cis-proline located in a loop preceding beta-strand 4, which makes contact with the active site cysteines, and is important for stability and function []. Thioredoxin belongs to a structural family that includes glutaredoxin, glutathione peroxidase, bacterial protein disulphide isomerase DsbA, and the N-terminal domain of glutathione transferase []. Thioredoxins have a beta-alpha unit preceding the motif common to all these proteins. A number of eukaryotic proteins contain domains evolutionary related to thioredoxin, most of them are protein disulphide isomerases (PDI). PDI (5.3.4.1 from EC) [, , ] is an endoplasmic reticulum multi-functional enzyme that catalyses the formation and rearrangement of disulphide bonds during protein folding []. All PDI contains two or three (ERp72) copies of the thioredoxin domain, each of which contributes to disulphide isomerase activity, but which are functionally non-equivalent []. Moreover, PDI exhibits chaperone-like activity towards proteins that contain no disulphide bonds, i.e. behaving independently of its disulphide isomerase activity []. The various forms of PDI which are currently known are: PDI major isozyme; a multifunctional protein that also function as the beta subunit of prolyl 4-hydroxylase (1.14.11.2 from EC), as a component of oligosaccharyl transferase (2.4.1.119 from EC), as thyroxine deiodinase (3.8.1.4 from EC), as glutathione-insulin transhydrogenase (1.8.4.2 from EC) and as a thyroid hormone-binding protein ERp60 (ER-60; 58 Kd microsomal protein). ERp60 was originally thought to be a phosphoinositide-specific phospholipase C isozyme and later to be a protease. ERp72. ERp5. Bacterial proteins that act as thiol:disulphide interchange proteins that allows disulphide bond formation in some periplasmic proteins also contain a thioredoxin domain. These proteins include: Escherichia coli DsbA (or PrfA) and its orthologs in Vibrio cholerae (TtcpG) and Haemophilus influenzae (Por). E. coli DsbC (or XpRA) and its orthologues in Erwinia chrysanthemi and H. influenzae. E. coli DsbD (or DipZ) and its H. influenzae orthologue. E. coli DsbE (or CcmG) and orthologues in H. influenzae. Rhodobacter capsulatus (Rhodopseudomonas capsulata) (HelX), Rhiziobiacae (CycY and TlpA). This entry represents the thioredoxin domain.; GO: 0045454 cell redox homeostasis; PDB: 3ED3_B 1EP7_A 1EP8_B 1TOF_A 2OE3_B 2OE1_B 2OE0_B 1V98_A 3H79_A 3CXG_A ....
Probab=97.49 E-value=0.00063 Score=49.02 Aligned_cols=43 Identities=21% Similarity=0.332 Sum_probs=36.5
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
+.+|+.|...||+.|+...|.|.++..++.+ ++.++-|..+..
T Consensus 18 ~~vvv~f~~~~C~~C~~~~~~~~~~~~~~~~-~v~~~~vd~~~~ 60 (103)
T PF00085_consen 18 KPVVVYFYAPWCPPCKAFKPILEKLAKEYKD-NVKFAKVDCDEN 60 (103)
T ss_dssp SEEEEEEESTTSHHHHHHHHHHHHHHHHTTT-TSEEEEEETTTS
T ss_pred CCEEEEEeCCCCCccccccceeccccccccc-ccccchhhhhcc
Confidence 5566666689999999999999999999987 898999987754
No 103
>cd02992 PDI_a_QSOX PDIa family, Quiescin-sulfhydryl oxidase (QSOX) subfamily; QSOX is a eukaryotic protein containing an N-terminal redox active TRX domain, similar to that of PDI, and a small C-terminal flavin adenine dinucleotide (FAD)-binding domain homologous to the yeast ERV1p protein. QSOX oxidizes thiol groups to disulfides like PDI, however, unlike PDI, this oxidation is accompanied by the reduction of oxygen to hydrogen peroxide. QSOX is localized in high concentrations in cells with heavy secretory load and prefers peptides and proteins as substrates, not monothiols like glutathione. Inside the cell, QSOX is found in the endoplasmic reticulum and Golgi. The flow of reducing equivalents in a QSOX-catalyzed reaction goes from the dithiol substrate - dithiol of the QSOX TRX domain - dithiols of the QSOX ERV1p domain - FAD - oxygen.
Probab=97.48 E-value=0.00049 Score=51.77 Aligned_cols=42 Identities=19% Similarity=0.185 Sum_probs=34.1
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhc--CcEEEEEeCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSA--GVKLIAVGVG 142 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~--gv~lv~Is~~ 142 (231)
+.+++.|++.||+.|+...+.+.++..++++. .+.+..|.++
T Consensus 20 ~~vvV~f~a~wC~~C~~~~~~~~~la~~~~~~~~~v~~~~vd~~ 63 (114)
T cd02992 20 SAWLVEFYASWCGHCRAFAPTWKKLARDLRKWRPVVRVAAVDCA 63 (114)
T ss_pred CeEEEEEECCCCHHHHHHhHHHHHHHHHHHhcCCceEEEEEecc
Confidence 57788888999999999999999999888642 3666667754
No 104
>cd03001 PDI_a_P5 PDIa family, P5 subfamily; composed of eukaryotic proteins similar to human P5, a PDI-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. Some members of this subfamily are P5-like proteins containing only one redox active TRX domain.
Probab=97.48 E-value=0.00049 Score=49.88 Aligned_cols=44 Identities=20% Similarity=0.161 Sum_probs=34.8
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
+.+|+.|++.||+.|+...+.+.++.+++.. .+.++.|..++..
T Consensus 19 ~~vlv~f~a~~C~~C~~~~~~~~~~~~~~~~-~~~~~~id~~~~~ 62 (103)
T cd03001 19 DVWLVEFYAPWCGHCKNLAPEWKKAAKALKG-IVKVGAVDADVHQ 62 (103)
T ss_pred CcEEEEEECCCCHHHHHHhHHHHHHHHHhcC-CceEEEEECcchH
Confidence 5566666699999999999999999888754 4778888776543
No 105
>cd02961 PDI_a_family Protein Disulfide Isomerase (PDIa) family, redox active TRX domains; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI and PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5, PDIR, ERp46 and the transmembrane PDIs. PDI, ERp57, ERp72, P5, PDIR and ERp46 are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins usually contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and may also contain one or more redox inactive TRX-like (b) domains. Only one a domain is required for the oxidase function but multiple copies
Probab=97.44 E-value=0.0004 Score=49.40 Aligned_cols=43 Identities=16% Similarity=0.181 Sum_probs=35.9
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhh-hcCcEEEEEeCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFD-SAGVKLIAVGVGT 143 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~-~~gv~lv~Is~~~ 143 (231)
+.++++|+..||+.|+...+.+.+..+.+. ..++.++.|..+.
T Consensus 16 ~~~~v~f~~~~C~~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 59 (101)
T cd02961 16 KDVLVEFYAPWCGHCKALAPEYEKLAKELKGDGKVVVAKVDCTA 59 (101)
T ss_pred CcEEEEEECCCCHHHHhhhHHHHHHHHHhccCCceEEEEeeccc
Confidence 466777779999999999999999998885 5668888888776
No 106
>PLN00410 U5 snRNP protein, DIM1 family; Provisional
Probab=97.42 E-value=0.00047 Score=54.14 Aligned_cols=45 Identities=13% Similarity=0.111 Sum_probs=36.6
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~ 146 (231)
++||+-|++.||++|+...|-|.++.+++.+. +.++-|.+|....
T Consensus 24 ~lVVvdF~A~WCgpCk~m~p~l~~la~~~~~~-~~~~kVDVDe~~d 68 (142)
T PLN00410 24 RLVVIRFGHDWDETCMQMDEVLASVAETIKNF-AVIYLVDITEVPD 68 (142)
T ss_pred CEEEEEEECCCChhHHHHHHHHHHHHHHcCCc-eEEEEEECCCCHH
Confidence 67778888999999999999999999988543 6677888776443
No 107
>TIGR01068 thioredoxin thioredoxin. Several proteins, such as protein disulfide isomerase, have two or more copies of a domain closely related to thioredoxin. This model is designed to recognize authentic thioredoxin, a small protein that should be hit exactly once by this model.
Probab=97.40 E-value=0.00031 Score=50.41 Aligned_cols=44 Identities=20% Similarity=0.289 Sum_probs=35.5
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
+.++++|+..||+.|+...+.|.++.+++. .++.++.|..+...
T Consensus 15 ~~vvi~f~~~~C~~C~~~~~~l~~~~~~~~-~~~~~~~vd~~~~~ 58 (101)
T TIGR01068 15 KPVLVDFWAPWCGPCKMIAPILEELAKEYE-GKVKFVKLNVDENP 58 (101)
T ss_pred CcEEEEEECCCCHHHHHhCHHHHHHHHHhc-CCeEEEEEECCCCH
Confidence 466777779999999999999999988775 35888888877543
No 108
>TIGR00424 APS_reduc 5'-adenylylsulfate reductase, thioredoxin-independent. This enzyme, involved in the assimilation of inorganic sulfate, is closely related to the thioredoxin-dependent PAPS reductase of Bacteria (CysH) and Saccharomyces cerevisiae. However, it has its own C-terminal thioredoxin-like domain and is not thioredoxin-dependent. Also, it has a substrate preference for 5'-adenylylsulfate (APS) over 3'-phosphoadenylylsulfate (PAPS) so the pathway does not require an APS kinase (CysC) to convert APS to PAPS. Arabidopsis thaliana appears to have three isozymes, all able to complement E. coli CysH mutants (even in backgrounds lacking thioredoxin or APS kinase) but likely localized to different compartments in Arabidopsis.
Probab=97.31 E-value=0.00041 Score=64.39 Aligned_cols=45 Identities=20% Similarity=0.316 Sum_probs=39.9
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
++++|+.|++.||+.|+...|.|.++.+++...++.++.|.++..
T Consensus 371 ~k~VLV~FyApWC~~Ck~m~P~~eelA~~~~~~~v~~~kVdvD~~ 415 (463)
T TIGR00424 371 KEAWLVVLYAPWCPFCQAMEASYLELAEKLAGSGVKVAKFRADGD 415 (463)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCcEEEEEECCCC
Confidence 477888888999999999999999999999877898999988854
No 109
>KOG0910 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.27 E-value=0.00048 Score=54.21 Aligned_cols=42 Identities=24% Similarity=0.289 Sum_probs=34.3
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
..||+.|++.||.+|+...|.|.++..+++ .-+++.-|..|+
T Consensus 62 ~PVlVdF~A~WCgPCk~l~P~l~~~~~~~~-g~~k~~kvdtD~ 103 (150)
T KOG0910|consen 62 VPVLVDFHAEWCGPCKMLGPILEELVSEYA-GKFKLYKVDTDE 103 (150)
T ss_pred CCEEEEEecCcCccHhHhhHHHHHHHHhhc-CeEEEEEEcccc
Confidence 556666679999999999999999999983 448888888654
No 110
>TIGR00411 redox_disulf_1 small redox-active disulfide protein 1. This protein is homologous to a family of proteins that includes thioredoxins, glutaredoxins, protein-disulfide isomerases, and others, some of which have several such domains. The sequence of this protein at the redox-active disufide site, CPYC, matches glutaredoxins rather than thioredoxins, although its overall sequence seems closer to thioredoxins. It is suggested to be a ribonucleotide-reducing system component distinct from thioredoxin or glutaredoxin.
Probab=97.26 E-value=0.0012 Score=45.81 Aligned_cols=41 Identities=17% Similarity=0.305 Sum_probs=32.7
Q ss_pred EEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 103 VVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 103 vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
.+..|++.||++|+...+.|.++..+++. .+.++-|..+..
T Consensus 2 ~v~~f~~~~C~~C~~~~~~l~~l~~~~~~-~~~~~~vd~~~~ 42 (82)
T TIGR00411 2 KIELFTSPTCPYCPAAKRVVEEVAKEMGD-AVEVEYINVMEN 42 (82)
T ss_pred EEEEEECCCCcchHHHHHHHHHHHHHhcC-ceEEEEEeCccC
Confidence 35566699999999999999999888753 377888887643
No 111
>COG0526 TrxA Thiol-disulfide isomerase and thioredoxins [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=97.25 E-value=0.0012 Score=47.13 Aligned_cols=56 Identities=25% Similarity=0.365 Sum_probs=40.7
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC--CHHHHHHHHh-cCCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--TPNKAQILAE-RLPFP 157 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~--~~~~~~~~~~-~~~fp 157 (231)
+.+++.|++.||+.|+..++.+.+..+++.. .+.++.|... .......|.. -..+|
T Consensus 33 ~~~~v~f~~~~C~~C~~~~~~l~~~~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~p 91 (127)
T COG0526 33 KPVLVDFWAPWCPPCRAEAPLLEELAEEYGG-DVEVVAVNVDDENPDLAAEFGVAVRSIP 91 (127)
T ss_pred ceEEEEEEcCcCHHHHhhchhHHHHHHHhcC-CcEEEEEECCCCChHHHHHHhhhhccCC
Confidence 4555555599999999999999999998876 6788888885 3344444442 34555
No 112
>cd02957 Phd_like Phosducin (Phd)-like family; composed of Phd and Phd-like proteins (PhLP), characterized as cytosolic regulators of G protein functions. Phd and PhLPs specifically bind G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane and impeding G protein-mediated signal transduction by inhibiting the formation of a functional G protein trimer (G protein alphabetagamma). Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-te
Probab=97.21 E-value=0.0015 Score=48.75 Aligned_cols=42 Identities=26% Similarity=0.389 Sum_probs=34.6
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
+.+++.|++.||+.|+...|.|.++.+++. ++.++-|..+..
T Consensus 25 ~~vvv~F~a~~c~~C~~l~~~l~~la~~~~--~v~f~~vd~~~~ 66 (113)
T cd02957 25 TRVVVHFYEPGFPRCKILDSHLEELAAKYP--ETKFVKINAEKA 66 (113)
T ss_pred CEEEEEEeCCCCCcHHHHHHHHHHHHHHCC--CcEEEEEEchhh
Confidence 567777779999999999999999998875 577777776654
No 113
>cd02947 TRX_family TRX family; composed of two groups: Group I, which includes proteins that exclusively encode a TRX domain; and Group II, which are composed of fusion proteins of TRX and additional domains. Group I TRX is a small ancient protein that alter the redox state of target proteins via the reversible oxidation of an active site dithiol, present in a CXXC motif, partially exposed at the protein's surface. TRX reduces protein disulfide bonds, resulting in a disulfide bond at its active site. Oxidized TRX is converted to the active form by TRX reductase, using reducing equivalents derived from either NADPH or ferredoxins. By altering their redox state, TRX regulates the functions of at least 30 target proteins, some of which are enzymes and transcription factors. It also plays an important role in the defense against oxidative stress by directly reducing hydrogen peroxide and certain radicals, and by serving as a reductant for peroxiredoxins. At least two major types of functio
Probab=97.20 E-value=0.0012 Score=45.92 Aligned_cols=41 Identities=27% Similarity=0.294 Sum_probs=34.3
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
+.+|++|+..||+.|+...+.+.++..+ ..++.++.|..+.
T Consensus 11 ~~~ll~~~~~~C~~C~~~~~~~~~~~~~--~~~~~~~~i~~~~ 51 (93)
T cd02947 11 KPVVVDFWAPWCGPCKAIAPVLEELAEE--YPKVKFVKVDVDE 51 (93)
T ss_pred CcEEEEEECCCChhHHHhhHHHHHHHHH--CCCceEEEEECCC
Confidence 5567777799999999999999998876 5678899998876
No 114
>cd02975 PfPDO_like_N Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO)-like family, N-terminal TRX-fold subdomain; composed of proteins with similarity to PfPDO, a redox active thermostable protein believed to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI), which are both involved in oxidative protein folding. PfPDO contains two redox active CXXC motifs in two contiguous TRX-fold subdomains. The active site in the N-terminal TRX-fold subdomain is required for isomerase but not for reductase activity of PfPDO. The exclusive presence of PfPDO-like proteins in extremophiles may suggest that they have a special role in adaptation to extreme conditions.
Probab=97.17 E-value=0.0015 Score=49.05 Aligned_cols=42 Identities=21% Similarity=0.233 Sum_probs=34.3
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
..++++|++.||++|+...+-|.++.+++ ..++++.|..+..
T Consensus 23 ~~vvv~f~a~wC~~C~~~~~~l~~la~~~--~~i~~~~vd~d~~ 64 (113)
T cd02975 23 VDLVVFSSKEGCQYCEVTKQLLEELSELS--DKLKLEIYDFDED 64 (113)
T ss_pred eEEEEEeCCCCCCChHHHHHHHHHHHHhc--CceEEEEEeCCcC
Confidence 56778888999999999999999988775 3578888887753
No 115
>PTZ00443 Thioredoxin domain-containing protein; Provisional
Probab=97.11 E-value=0.0014 Score=55.38 Aligned_cols=43 Identities=12% Similarity=0.149 Sum_probs=34.0
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
..+++.|+++||+.|+...|.+.+++++++. .+.+..|.++..
T Consensus 53 ~~vlV~FyApWC~~Ck~~~P~~e~la~~~~~-~v~~~~VD~~~~ 95 (224)
T PTZ00443 53 GPWFVKFYAPWCSHCRKMAPAWERLAKALKG-QVNVADLDATRA 95 (224)
T ss_pred CCEEEEEECCCChHHHHHHHHHHHHHHHcCC-CeEEEEecCccc
Confidence 4566677799999999999999999998864 366666766644
No 116
>PLN02309 5'-adenylylsulfate reductase
Probab=97.05 E-value=0.0015 Score=60.57 Aligned_cols=43 Identities=19% Similarity=0.353 Sum_probs=38.9
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~ 142 (231)
++.+|+.|.+.||+.|+...+.|.++.+++...++.+..|.++
T Consensus 365 ~k~vlV~FyApWC~~Cq~m~p~~e~LA~~~~~~~V~f~kVD~d 407 (457)
T PLN02309 365 KEPWLVVLYAPWCPFCQAMEASYEELAEKLAGSGVKVAKFRAD 407 (457)
T ss_pred CCeEEEEEECCCChHHHHHHHHHHHHHHHhccCCeEEEEEECC
Confidence 4778888889999999999999999999998888999999988
No 117
>PF13098 Thioredoxin_2: Thioredoxin-like domain; PDB: 1T3B_A 2L57_A 1EEJ_B 1TJD_A 1JZD_B 1JZO_A 1G0T_B 3GV1_A 1V58_A 2H0H_A ....
Probab=97.05 E-value=0.00079 Score=49.74 Aligned_cols=73 Identities=14% Similarity=0.233 Sum_probs=41.0
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHH---HhhhcCcEEEEEeCCCHHH-HHHHHhcCCCCCcceeecCcchHHHHhCC
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKA---RFDSAGVKLIAVGVGTPNK-AQILAERLPFPMDCLYADPDRKVYNLLGL 175 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~---~l~~~gv~lv~Is~~~~~~-~~~~~~~~~fp~~~vl~D~~~~~~~~~g~ 175 (231)
|+.+|++|+..|||+|+...+++.+..+ .+ +.++.++.+..++... ..++.+.-+.+ -+...+.++.+.||+
T Consensus 5 ~k~~v~~F~~~~C~~C~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~~v 80 (112)
T PF13098_consen 5 GKPIVVVFTDPWCPYCKKLEKELFPDNDVARYL-KDDFQVIFVNIDDSRDESEAVLDFDGQK---NVRLSNKELAQRYGV 80 (112)
T ss_dssp SSEEEEEEE-TT-HHHHHHHHHHHHHHHHHCEE-HCECEEEECESHSHHHHHHHHHSHTCHS---SCHHHHHHHHHHTT-
T ss_pred CCEEEEEEECCCCHHHHHHHHHHHHHHHHHHHh-hcCeEEEEEecCCcccccccccccccch---hhhHHHHHHHHHcCC
Confidence 4666666679999999988777775433 33 3358888888876543 23343321112 123344567777776
Q ss_pred c
Q 026909 176 Y 176 (231)
Q Consensus 176 ~ 176 (231)
.
T Consensus 81 ~ 81 (112)
T PF13098_consen 81 N 81 (112)
T ss_dssp -
T ss_pred C
Confidence 4
No 118
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=97.05 E-value=0.0016 Score=56.69 Aligned_cols=44 Identities=23% Similarity=0.302 Sum_probs=36.4
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
..|||.||++||+.|+.-+|.|.++..+++. .+.++-|++|...
T Consensus 44 ~PVlV~fWap~~~~c~qL~p~Lekla~~~~G-~f~LakvN~D~~p 87 (304)
T COG3118 44 VPVLVDFWAPWCGPCKQLTPTLEKLAAEYKG-KFKLAKVNCDAEP 87 (304)
T ss_pred CCeEEEecCCCCchHHHHHHHHHHHHHHhCC-ceEEEEecCCcch
Confidence 5677888899999999999999999988753 4778888877543
No 119
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.96 E-value=0.0021 Score=58.97 Aligned_cols=58 Identities=17% Similarity=0.208 Sum_probs=43.3
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcC--cEEEEEeCCCHHHHHHHHhcCCCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGTPNKAQILAERLPFPM 158 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~g--v~lv~Is~~~~~~~~~~~~~~~fp~ 158 (231)
+.++++|++.||+.|+...+.+.+.++.+++.+ +.++.|.++....+..-..-.+||.
T Consensus 19 ~~~~v~f~a~wC~~c~~~~~~~~~~a~~~~~~~~~v~~~~vd~~~~~~l~~~~~i~~~Pt 78 (462)
T TIGR01130 19 EFVLVEFYAPWCGHCKSLAPEYEKAADELKKKGPPIKLAKVDATEEKDLAQKYGVSGYPT 78 (462)
T ss_pred CCEEEEEECCCCHHHHhhhHHHHHHHHHHhhcCCceEEEEEECCCcHHHHHhCCCccccE
Confidence 677888889999999999999999999888766 8888888876543322222244663
No 120
>COG4312 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.88 E-value=0.0038 Score=51.98 Aligned_cols=93 Identities=23% Similarity=0.344 Sum_probs=72.1
Q ss_pred CeEEECCCCCeEeccccccCCCCcEEEEE-ec----CCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHh
Q 026909 78 DFSIFTAAGEPVLFKDLWDQNEGVAVVAL-LR----HFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE 152 (231)
Q Consensus 78 ~f~l~d~~G~~v~l~dl~~~~~g~~vL~f-~r----~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~ 152 (231)
+......+| +.+|.||.+.+ ...+|+- +. .-.||.|...+..+.-....|+..+|.+|+|+-...+.+..|++
T Consensus 54 ~Y~Fe~~~G-~~sLadLF~gr-sqLIvYhfmF~P~~~~~C~gCS~laD~~dGa~~HL~~~dv~lv~VsRAPl~~l~~~k~ 131 (247)
T COG4312 54 DYVFETENG-KKSLADLFGGR-SQLIVYHFMFGPGWDHGCPGCSFLADHWDGAVAHLEHHDVTLVAVSRAPLEELVAYKR 131 (247)
T ss_pred eeEeecCCc-chhHHHHhCCC-ceEEEEEEecCCCccCCCCchhhHHhhhhhhhhhHhhcCceEEEEecCcHHHHHHHHH
Confidence 344444566 79999999873 3444433 22 34799999999999888888999999999999999999999999
Q ss_pred c--CCCCCcceeecCcchHHHHhCC
Q 026909 153 R--LPFPMDCLYADPDRKVYNLLGL 175 (231)
Q Consensus 153 ~--~~fp~~~vl~D~~~~~~~~~g~ 175 (231)
+ ..|| .+++.+.++-+.|.+
T Consensus 132 rmGW~f~---w~Ss~~s~Fn~Df~v 153 (247)
T COG4312 132 RMGWQFP---WVSSTDSDFNRDFQV 153 (247)
T ss_pred hcCCcce---eEeccCccccccccc
Confidence 5 5577 899888888777754
No 121
>PF00837 T4_deiodinase: Iodothyronine deiodinase; InterPro: IPR000643 Iodothyronine deiodinase (1.97.1.10 from EC) (DI) [] is the vertebrate enzyme responsible for the deiodination of the prohormone thyroxine (T4 or 3,5,3',5'-tetraiodothyronine) into the biologically active hormone T3 (3,5,3'-triiodothyronine) and of T3 into the inactive metabolite T2 (3,3'-diiodothyronine). All known DI are proteins of about 250 residues that contain a selenocysteine at their active site. Three types of DI are known, type II is essential for providing the brain with the appropriate levels of T3 during the critical period of development, and type III is essential for the regulation of thyroid hormone inactivation during embryological development.; GO: 0004800 thyroxine 5'-deiodinase activity, 0055114 oxidation-reduction process
Probab=96.85 E-value=0.00082 Score=56.81 Aligned_cols=103 Identities=18% Similarity=0.228 Sum_probs=76.0
Q ss_pred CCCCCCCCCcCCeEEECCCCCe-EeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 67 EFPANVGDLLGDFSIFTAAGEP-VLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 67 ~~~~~vG~~ap~f~l~d~~G~~-v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
.....+|..|||..+.+.+|+. .++-|+... ++.+|++|....||+=...+.+++++.++|.+. ++++.|.+....
T Consensus 70 ~~~a~~G~~APns~vv~l~g~~~~~ildf~~g--~RPLVlnFGS~TCPpF~~~l~~f~~l~~~f~d~-adFl~VYI~EAH 146 (237)
T PF00837_consen 70 FKEAKLGGPAPNSPVVTLDGQRSCRILDFAKG--NRPLVLNFGSCTCPPFMAKLDAFKRLVEDFSDV-ADFLIVYIEEAH 146 (237)
T ss_pred ccceeCCCCCCCCceEeeCCCcceeHHHhccC--CCCeEEEcccccchHHHHHHHHHHHHHHHhhhh-hheehhhHhhhC
Confidence 4567889999999999999999 999999654 377788888888999999999999999999862 455655432111
Q ss_pred -------------------------HHHHHHh-cCCCCCcceeecC-cchHHHHhCC
Q 026909 146 -------------------------KAQILAE-RLPFPMDCLYADP-DRKVYNLLGL 175 (231)
Q Consensus 146 -------------------------~~~~~~~-~~~fp~~~vl~D~-~~~~~~~~g~ 175 (231)
.++.+.+ ...+| +++|. ++...++||.
T Consensus 147 psDgW~~~~~~~~i~qh~sledR~~aA~~l~~~~~~~p---i~vD~mdN~~~~~YgA 200 (237)
T PF00837_consen 147 PSDGWAFGNNPYEIPQHRSLEDRLRAAKLLKEEFPQCP---IVVDTMDNNFNKAYGA 200 (237)
T ss_pred cCCCccCCCCceeecCCCCHHHHHHHHHHHHhhCCCCC---EEEEccCCHHHHHhCC
Confidence 1233333 25677 77874 5666777777
No 122
>cd01659 TRX_superfamily Thioredoxin (TRX) superfamily; a large, diverse group of proteins containing a TRX-fold. Many members contain a classic TRX domain with a redox active CXXC motif. They function as protein disulfide oxidoreductases (PDOs), altering the redox state of target proteins via the reversible oxidation of their active site dithiol. The PDO members of this superfamily include TRX, protein disulfide isomerase (PDI), tlpA-like, glutaredoxin, NrdH redoxin, and the bacterial Dsb (DsbA, DsbC, DsbG, DsbE, DsbDgamma) protein families. Members of the superfamily that do not function as PDOs but contain a TRX-fold domain include phosducins, peroxiredoxins and glutathione (GSH) peroxidases, SCO proteins, GSH transferases (GST, N-terminal domain), arsenic reductases, TRX-like ferredoxins and calsequestrin, among others.
Probab=96.83 E-value=0.0027 Score=40.07 Aligned_cols=45 Identities=29% Similarity=0.349 Sum_probs=36.2
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHH
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL 150 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~ 150 (231)
|++|+..||+.|....+.+.+. +....++.++.|+.+.......+
T Consensus 1 l~~~~~~~c~~c~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 45 (69)
T cd01659 1 LVLFYAPWCPFCQALRPVLAEL--ALLNKGVKFEAVDVDEDPALEKE 45 (69)
T ss_pred CEEEECCCChhHHhhhhHHHHH--HhhCCCcEEEEEEcCCChHHhhH
Confidence 3566799999999999999988 55667899999999877655554
No 123
>cd02989 Phd_like_TxnDC9 Phosducin (Phd)-like family, Thioredoxin (TRX) domain containing protein 9 (TxnDC9) subfamily; composed of predominantly uncharacterized eukaryotic proteins, containing a TRX-like domain without the redox active CXXC motif. The gene name for the human protein is TxnDC9. The two characterized members are described as Phd-like proteins, PLP1 of Saccharomyces cerevisiae and PhLP3 of Dictyostelium discoideum. Gene disruption experiments show that both PLP1 and PhLP3 are non-essential proteins. Unlike Phd and most Phd-like proteins, members of this group do not contain the Phd N-terminal helical domain which is implicated in binding to the G protein betagamma subunit.
Probab=96.82 E-value=0.0049 Score=46.23 Aligned_cols=42 Identities=19% Similarity=0.117 Sum_probs=34.1
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
..+++.|++.||+.|+...+.|.++.+++. +++++-|..+..
T Consensus 23 ~~vvV~f~a~~c~~C~~~~p~l~~la~~~~--~i~f~~Vd~~~~ 64 (113)
T cd02989 23 ERVVCHFYHPEFFRCKIMDKHLEILAKKHL--ETKFIKVNAEKA 64 (113)
T ss_pred CcEEEEEECCCCccHHHHHHHHHHHHHHcC--CCEEEEEEcccC
Confidence 556666679999999999999999988774 478888887654
No 124
>PTZ00102 disulphide isomerase; Provisional
Probab=96.81 E-value=0.002 Score=59.67 Aligned_cols=67 Identities=12% Similarity=0.231 Sum_probs=44.3
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhc-CcEEEEEeCCCHHHH-HHHHhcCCCCCcceeecCcch
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSA-GVKLIAVGVGTPNKA-QILAERLPFPMDCLYADPDRK 168 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~-gv~lv~Is~~~~~~~-~~~~~~~~fp~~~vl~D~~~~ 168 (231)
++.+|+.|++.||+.|+...|.+.++..++++. .+.++.|..+..... ..|. --++|.- ++.+.++.
T Consensus 375 ~k~vlv~f~a~wC~~C~~~~p~~~~~a~~~~~~~~v~~~~id~~~~~~~~~~~~-v~~~Pt~-~~~~~~~~ 443 (477)
T PTZ00102 375 DKDVLLEIYAPWCGHCKNLEPVYNELGEKYKDNDSIIVAKMNGTANETPLEEFS-WSAFPTI-LFVKAGER 443 (477)
T ss_pred CCCEEEEEECCCCHHHHHHHHHHHHHHHHhccCCcEEEEEEECCCCccchhcCC-CcccCeE-EEEECCCc
Confidence 477788888999999999999999998888764 366666776543322 2221 2345643 45555543
No 125
>PF13899 Thioredoxin_7: Thioredoxin-like; PDB: 2LST_A 3PH9_A 1UC7_A 2JU5_A 1VRS_D 2FWG_A 2FWF_A 2FWH_A 2FWE_A 3FK8_A ....
Probab=96.80 E-value=0.0088 Score=41.95 Aligned_cols=63 Identities=21% Similarity=0.359 Sum_probs=40.0
Q ss_pred CcEEEEEecCCCCcchHHHHHHHH---HHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeecC
Q 026909 100 GVAVVALLRHFGCPCCWELASALK---ESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADP 165 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~---~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~ 165 (231)
++.|++.|.+.||+.|+..-..+- +..+.+ ..++.+|-|..++.+....+.. .++|.- ++.||
T Consensus 17 ~kpvlv~f~a~wC~~C~~l~~~~~~~~~v~~~~-~~~fv~v~vd~~~~~~~~~~~~-~~~P~~-~~ldp 82 (82)
T PF13899_consen 17 GKPVLVDFGADWCPPCKKLEREVFSDPEVQEAL-NKNFVLVKVDVDDEDPNAQFDR-QGYPTF-FFLDP 82 (82)
T ss_dssp TSEEEEEEETTTTHHHHHHHHHTTTSHHHHHHH-HHCSEEEEEETTTHHHHHHHHH-CSSSEE-EEEET
T ss_pred CCCEEEEEECCCCHhHHHHHHHHcCCHHHHHHH-HCCEEEEEEEcCCCChhHHhCC-ccCCEE-EEeCC
Confidence 467777778999999998776662 222223 3678888888877665443333 346632 55554
No 126
>cd02955 SSP411 TRX domain, SSP411 protein family; members of this family are highly conserved proteins present in eukaryotes, bacteria and archaea, about 600-800 amino acids in length, which contain a TRX domain with a redox active CXXC motif. The human/rat protein, called SSP411, is specifically expressed in the testis in an age-dependent manner. The SSP411 mRNA is increased during spermiogenesis and is localized in round and elongated spermatids, suggesting a function in fertility regulation.
Probab=96.78 E-value=0.0083 Score=45.97 Aligned_cols=68 Identities=18% Similarity=0.327 Sum_probs=41.8
Q ss_pred CcEEEEEecCCCCcchHHHHHH-HH--HHHHHhhhcCcEEEEEeCCC-HHHHHHHHh-------cCCCCCcceeecCcch
Q 026909 100 GVAVVALLRHFGCPCCWELASA-LK--ESKARFDSAGVKLIAVGVGT-PNKAQILAE-------RLPFPMDCLYADPDRK 168 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~-L~--~~~~~l~~~gv~lv~Is~~~-~~~~~~~~~-------~~~fp~~~vl~D~~~~ 168 (231)
++.|+++|.+.||+.|+..-+. +. ++.+.+ ..++.+|-|..+. ++..+.+.+ ..++|.- ++.|++++
T Consensus 15 ~KpVll~f~a~WC~~Ck~me~~~f~~~~V~~~l-~~~fv~VkvD~~~~~~~~~~~~~~~~~~~~~~G~Pt~-vfl~~~G~ 92 (124)
T cd02955 15 DKPIFLSIGYSTCHWCHVMEHESFEDEEVAAIL-NENFVPIKVDREERPDVDKIYMNAAQAMTGQGGWPLN-VFLTPDLK 92 (124)
T ss_pred CCeEEEEEccCCCHhHHHHHHHccCCHHHHHHH-hCCEEEEEEeCCcCcHHHHHHHHHHHHhcCCCCCCEE-EEECCCCC
Confidence 4777788889999999976553 22 333433 3356666666653 333333432 2457743 88899977
Q ss_pred H
Q 026909 169 V 169 (231)
Q Consensus 169 ~ 169 (231)
.
T Consensus 93 ~ 93 (124)
T cd02955 93 P 93 (124)
T ss_pred E
Confidence 5
No 127
>cd02987 Phd_like_Phd Phosducin (Phd)-like family, Phd subfamily; Phd is a cytosolic regulator of G protein functions. It specifically binds G protein betagamma (Gbg)-subunits with high affinity, resulting in the solubilization of Gbg from the plasma membrane. This impedes the formation of a functional G protein trimer (G protein alphabetagamma), thereby inhibiting G protein-mediated signal transduction. Phd also inhibits the GTPase activity of G protein alpha. Phd can be phosphorylated by protein kinase A and G protein-coupled receptor kinase 2, leading to its inactivation. Phd was originally isolated from the retina, where it is highly expressed and has been implicated to play an important role in light adaptation. It is also found in the pineal gland, liver, spleen, striated muscle and the brain. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=96.76 E-value=0.0035 Score=50.89 Aligned_cols=42 Identities=26% Similarity=0.348 Sum_probs=35.4
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
..||+.|++.||+.|+...+.|.++..++. +++++-|..+..
T Consensus 84 ~~VVV~Fya~wc~~Ck~m~~~l~~LA~~~~--~vkF~kVd~d~~ 125 (175)
T cd02987 84 TTVVVHIYEPGIPGCAALNSSLLCLAAEYP--AVKFCKIRASAT 125 (175)
T ss_pred cEEEEEEECCCCchHHHHHHHHHHHHHHCC--CeEEEEEeccch
Confidence 477777889999999999999999998874 588888888754
No 128
>cd03065 PDI_b_Calsequestrin_N PDIb family, Calsequestrin subfamily, N-terminal TRX-fold domain; Calsequestrin is the major calcium storage protein in the sarcoplasmic reticulum (SR) of skeletal and cardiac muscle. It stores calcium ions in sufficient quantities (up to 20 mM) to allow repetitive contractions and is essential to maintain movement, respiration and heart beat. A missense mutation in human cardiac calsequestrin is associated with catecholamine-induced polymorphic ventricular tachycardia (CPVT), a rare disease characterized by seizures or sudden death in response to physiologic or emotional stress. Calsequestrin is a highly acidic protein with up to 50 calcium binding sites formed simply by the clustering of two or more acidic residues. The monomer contains three redox inactive TRX-fold domains. Calsequestrin is condensed as a linear polymer in the SR lumen and is membrane-anchored through binding with intra-membrane proteins triadin, junctin and ryanodine receptor (RyR) Ca2
Probab=96.74 E-value=0.0049 Score=46.98 Aligned_cols=44 Identities=11% Similarity=0.070 Sum_probs=33.9
Q ss_pred cEEEEEecCCCCcc--hH--HHHHHHHHHHHH-hhhcCcEEEEEeCCCH
Q 026909 101 VAVVALLRHFGCPC--CW--ELASALKESKAR-FDSAGVKLIAVGVGTP 144 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~--C~--~~l~~L~~~~~~-l~~~gv~lv~Is~~~~ 144 (231)
.++|+||++.||+. |+ ...|-|.+.+.+ +++.++.++-|.++..
T Consensus 28 ~~vvv~f~a~wc~p~~Ck~~~~~p~~~~~aa~~l~~~~v~~~kVD~d~~ 76 (120)
T cd03065 28 VLCLLYHEPVESDKEAQKQFQMEELVLELAAQVLEDKGIGFGLVDSKKD 76 (120)
T ss_pred ceEEEEECCCcCChhhChhhcchhhHHHHHHHHhhcCCCEEEEEeCCCC
Confidence 78999999999988 99 566667766655 4556788888887643
No 129
>cd02982 PDI_b'_family Protein Disulfide Isomerase (PDIb') family, redox inactive TRX-like domain b'; composed of eukaryotic proteins involved in oxidative protein folding in the endoplasmic reticulum (ER) by acting as catalysts and folding assistants. Members of this family include PDI, calsequestrin and other PDI-related proteins like ERp72, ERp57 (or ERp60), ERp44, P5 and PDIR. PDI, ERp57, ERp72, P5 and PDIR are all oxidases, catalyzing the formation of disulfide bonds of newly synthesized polypeptides in the ER. They also exhibit reductase activity in acting as isomerases to correct any non-native disulfide bonds, as well as chaperone activity to prevent protein aggregation and facilitate the folding of newly synthesized proteins. These proteins contain multiple copies of a redox active TRX (a) domain containing a CXXC motif, and one or more redox inactive TRX-like (b) domains. The molecular structure of PDI is abb'a'. Also included in this family is the PDI-related protein ERp27, w
Probab=96.72 E-value=0.0051 Score=44.54 Aligned_cols=44 Identities=16% Similarity=0.180 Sum_probs=35.0
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
..++++|...||+.|....+.+.++..+++.. +.++-|..+...
T Consensus 13 ~~~~~~f~~~~~~~~~~~~~~~~~vA~~~~~~-v~f~~vd~~~~~ 56 (103)
T cd02982 13 KPLLVLFYNKDDSESEELRERFKEVAKKFKGK-LLFVVVDADDFG 56 (103)
T ss_pred CCEEEEEEcCChhhHHHHHHHHHHHHHHhCCe-EEEEEEchHhhH
Confidence 44555666999999999999999999999743 778888776633
No 130
>cd02965 HyaE HyaE family; HyaE is also called HupG and HoxO. They are proteins serving a critical role in the assembly of multimeric [NiFe] hydrogenases, the enzymes that catalyze the oxidation of molecular hydrogen to enable microorganisms to utilize hydrogen as the sole energy source. The E. coli HyaE protein is a chaperone that specifically interacts with the twin-arginine translocation (Tat) signal peptide of the [NiFe] hydrogenase-1 beta subunit precursor. Tat signal peptides target precursor proteins to the Tat protein export system, which facilitates the transport of fully folded proteins across the inner membrane. HyaE may be involved in regulating the traffic of [NiFe] hydrogenase-1 on the Tat transport pathway.
Probab=96.65 E-value=0.007 Score=45.51 Aligned_cols=43 Identities=23% Similarity=0.205 Sum_probs=32.2
Q ss_pred cEEEEEecCCC--CcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 101 VAVVALLRHFG--CPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 101 ~~vL~f~r~~~--Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
..++++|.+.| ||.|+...|.|.++.+++.+. +.++-|..++.
T Consensus 28 ~~~v~~f~~~~~~cp~c~~i~P~leela~e~~~~-v~f~kVdid~~ 72 (111)
T cd02965 28 GDLVLLLAGDPVRFPEVLDVAVVLPELLKAFPGR-FRAAVVGRADE 72 (111)
T ss_pred CCEEEEecCCcccCcchhhhHhHHHHHHHHCCCc-EEEEEEECCCC
Confidence 45556666886 999999999999999988643 56666665543
No 131
>PRK00293 dipZ thiol:disulfide interchange protein precursor; Provisional
Probab=96.64 E-value=0.0054 Score=58.71 Aligned_cols=67 Identities=19% Similarity=0.249 Sum_probs=43.9
Q ss_pred CcEEEEEecCCCCcchHHHHHHH---HHHHHHhhhcCcEEEEEeCCCH-HHHHHHHhc---CCCCCcceeecCcchH
Q 026909 100 GVAVVALLRHFGCPCCWELASAL---KESKARFDSAGVKLIAVGVGTP-NKAQILAER---LPFPMDCLYADPDRKV 169 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L---~~~~~~l~~~gv~lv~Is~~~~-~~~~~~~~~---~~fp~~~vl~D~~~~~ 169 (231)
|+.|++.|+++||+.|+...+.. .+..++++ ++.++-|..++. ....++.++ .++|.- ++.|++++.
T Consensus 474 gK~VlVdF~A~WC~~Ck~~e~~~~~~~~v~~~l~--~~~~v~vDvt~~~~~~~~l~~~~~v~g~Pt~-~~~~~~G~~ 547 (571)
T PRK00293 474 GKPVMLDLYADWCVACKEFEKYTFSDPQVQQALA--DTVLLQADVTANNAEDVALLKHYNVLGLPTI-LFFDAQGQE 547 (571)
T ss_pred CCcEEEEEECCcCHhHHHHHHHhcCCHHHHHHhc--CCEEEEEECCCCChhhHHHHHHcCCCCCCEE-EEECCCCCC
Confidence 57788888899999999876653 45555564 577777776642 234455553 445532 677877765
No 132
>cd02973 TRX_GRX_like Thioredoxin (TRX)-Glutaredoxin (GRX)-like family; composed of archaeal and bacterial proteins that show similarity to both TRX and GRX, including the C-terminal TRX-fold subdomain of Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). All members contain a redox-active CXXC motif and may function as PDOs. The archaeal proteins Mj0307 and Mt807 show structures more similar to GRX, but activities more similar to TRX. Some members of the family are similar to PfPDO in that they contain a second CXXC motif located in a second TRX-fold subdomain at the N-terminus; the superimposable N- and C-terminal TRX subdomains form a compact structure. PfPDO is postulated to be the archaeal counterpart of bacterial DsbA and eukaryotic protein disulfide isomerase (PDI). The C-terminal CXXC motif of PfPDO is required for its oxidase, reductase and isomerase activities. Also included in the family is the C-terminal TRX-fold subdomain of the N-terminal domain (NTD) of bacteri
Probab=96.50 E-value=0.012 Score=39.25 Aligned_cols=39 Identities=13% Similarity=0.200 Sum_probs=28.7
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
+..|.+.|||+|+...+.|.++.++. .++.+.-|..++.
T Consensus 3 v~~f~~~~C~~C~~~~~~l~~l~~~~--~~i~~~~id~~~~ 41 (67)
T cd02973 3 IEVFVSPTCPYCPDAVQAANRIAALN--PNISAEMIDAAEF 41 (67)
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHhC--CceEEEEEEcccC
Confidence 45566899999999888888876543 3577877876643
No 133
>PF04592 SelP_N: Selenoprotein P, N terminal region; InterPro: IPR007671 SelP is the only known eukaryotic selenoprotein that contains multiple selenocysteine (Sec) residues, and accounts for more than 50% of the selenium content of rat and human plasma []. It is thought to be glycosylated []. SelP may have antioxidant properties. It can attach to epithelial cells, and may protect vascular endothelial cells against peroxynitrite toxicity []. The high selenium content of SelP suggests that it may be involved in selenium intercellular transport or storage []. The promoter structure of bovine SelP suggests that it may be involved in countering heavy metal intoxication, and may also have a developmental function []. The N-terminal region of SelP can exist independently of the C-terminal region. Zebrafish selenoprotein Pb (Q98SV0 from SWISSPROT) lacks the C-terminal Sec-rich region, and a protein encoded by the rat SelP gene and lacking this region has also been reported []. The N-terminal region contains a conserved SecxxCys motif, which is similar to the CysxxCys found in thioredoxins. It is speculated that the N-terminal region may adopt a thioredoxin fold and catalyse redox reactions []. The N-terminal region also contains a His-rich region, which is thought to mediate heparin binding. Binding to heparan proteoglycans could account for the membrane binding properties of SelP []. The function of the bacterial members of this family is uncharacterised.; GO: 0008430 selenium binding
Probab=96.48 E-value=0.028 Score=47.46 Aligned_cols=91 Identities=20% Similarity=0.299 Sum_probs=63.3
Q ss_pred CcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcC---cEEEEEeCCCHHHHHHH-
Q 026909 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAG---VKLIAVGVGTPNKAQIL- 150 (231)
Q Consensus 75 ~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~g---v~lv~Is~~~~~~~~~~- 150 (231)
+.|.+++-+ .....+.. |.|+|+-+--..|.+|..++..|..+..+|+..| |.+++|+.-+......|
T Consensus 9 ~~p~W~i~~----~~pm~~~~----G~VtvVALL~asc~~c~~qa~~le~Lr~kL~~~g~~~I~f~vVN~~~~~s~~~~~ 80 (238)
T PF04592_consen 9 PPPPWKIGG----QDPMLNSL----GHVTVVALLQASCYFCLLQASRLEDLREKLENEGLSNISFMVVNHQGEHSRLKYW 80 (238)
T ss_pred CCCCceECC----chHhhhcC----CcEEeeeehhhhhHHHHHHHHHHHHHHHHHHHCCCCceEEEEEcCCCcchhHHHH
Confidence 345565433 33344443 5677777767799999999999999999999876 67888887654443322
Q ss_pred --HhcCC--CCCcceee-c-CcchHHHHhCCc
Q 026909 151 --AERLP--FPMDCLYA-D-PDRKVYNLLGLY 176 (231)
Q Consensus 151 --~~~~~--fp~~~vl~-D-~~~~~~~~~g~~ 176 (231)
.++.+ || ||- | .+.+++..|+-.
T Consensus 81 ~l~~r~~~~ip---Vyqq~~~q~dvW~~L~G~ 109 (238)
T PF04592_consen 81 ELKRRVSEHIP---VYQQDENQPDVWELLNGS 109 (238)
T ss_pred HHHHhCCCCCc---eecCCccccCHHHHhCCC
Confidence 33444 99 886 3 668899999874
No 134
>cd02960 AGR Anterior Gradient (AGR) family; members of this family are similar to secreted proteins encoded by the cement gland-specific genes XAG-1 and XAG-2, expressed in the anterior region of dorsal ectoderm of Xenopus. They are implicated in the formation of the cement gland and the induction of forebrain fate. The human homologs, hAG-2 and hAG-3, are secreted proteins associated with estrogen-positive breast tumors. Yeast two-hybrid studies identified the metastasis-associated C4.4a protein and dystroglycan as binding partners, indicating possible roles in the development and progression of breast cancer. hAG-2 has also been implicated in prostate cancer. Its gene was cloned as an androgen-inducible gene and it was shown to be overexpressed in prostate cancer cells at the mRNA and protein levels. AGR proteins contain one conserved cysteine corresponding to the first cysteine in the CXXC motif of TRX. They show high sequence similarity to ERp19.
Probab=96.47 E-value=0.0042 Score=48.04 Aligned_cols=99 Identities=15% Similarity=0.203 Sum_probs=52.4
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHH--HHHhhhcCcEEEEEeCCCHH-HHHHHHhcCCCCCcceeecCcchHHHHhCCc
Q 026909 100 GVAVVALLRHFGCPCCWELASALKES--KARFDSAGVKLIAVGVGTPN-KAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~--~~~l~~~gv~lv~Is~~~~~-~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
++.|+++|...||++|+..-...-+- ..++-+.++-+|-+..+..+ ... .....+|.- ++.|+++++-..+--+
T Consensus 23 ~Kpvmv~f~sdwC~~Ck~l~k~~f~~~eV~~~l~~~Fv~V~l~~d~td~~~~--~~g~~vPti-vFld~~g~vi~~i~Gy 99 (130)
T cd02960 23 NKPLMVIHHLEDCPHSQALKKAFAEHKEIQKLAQEDFIMLNLVHETTDKNLS--PDGQYVPRI-MFVDPSLTVRADITGR 99 (130)
T ss_pred CCeEEEEEeCCcCHhHHHHHHHhhCCHHHHHHHHhCeEEEEEEeccCCCCcC--ccCcccCeE-EEECCCCCCccccccc
Confidence 57777778899999999876654321 22233334433333333211 010 122345532 8889999876665444
Q ss_pred ccccceeeccChhhHhhHHHHHHHHHh
Q 026909 177 HGVGRTFFNPASAKVFSRFEALRKAVQ 203 (231)
Q Consensus 177 ~g~~~~~~~p~~~~v~~~~~~l~~~~k 203 (231)
.+...-.+.|.-.. .....|+++.+
T Consensus 100 ~~~~~~~y~~~~~~--~~~~~m~~a~~ 124 (130)
T cd02960 100 YSNRLYTYEPADIP--LLIENMKKALK 124 (130)
T ss_pred ccCccceeCcCcHH--HHHHHHHHHHH
Confidence 45444556664321 22244554443
No 135
>TIGR00412 redox_disulf_2 small redox-active disulfide protein 2. This small protein is found in three archaeal species so far (Methanococcus jannaschii, Archeoglobus fulgidus, and Methanobacterium thermoautotrophicum) as well as in Anabaena PCC7120. It is homologous to thioredoxins, glutaredoxins, and protein disulfide isomerases, and shares with them a redox-active disulfide. The redox active disulfide region CXXC motif resembles neither thioredoxin nor glutaredoxin. A closely related protein found in the same three Archaea, described by redox_disulf_1, has a glutaredoxin-like CP[YH]C sequence; it has been characterized in functional assays as redox-active but unlikely to be a thioredoxin or glutaredoxin.
Probab=96.44 E-value=0.0086 Score=41.60 Aligned_cols=52 Identities=15% Similarity=0.149 Sum_probs=33.5
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeec
Q 026909 107 LRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYAD 164 (231)
Q Consensus 107 ~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D 164 (231)
|.+.|||.|....+.+.++.+++. +.+-.+..++.+.+.+| .-...|. ++.|
T Consensus 5 ~~a~~C~~C~~~~~~~~~~~~e~~---~~~~~~~v~~~~~a~~~-~v~~vPt--i~i~ 56 (76)
T TIGR00412 5 IYGTGCANCQMTEKNVKKAVEELG---IDAEFEKVTDMNEILEA-GVTATPG--VAVD 56 (76)
T ss_pred EECCCCcCHHHHHHHHHHHHHHcC---CCeEEEEeCCHHHHHHc-CCCcCCE--EEEC
Confidence 347999999999999999988764 44444555555543332 1234453 4553
No 136
>PTZ00102 disulphide isomerase; Provisional
Probab=96.43 E-value=0.0086 Score=55.44 Aligned_cols=46 Identities=17% Similarity=0.190 Sum_probs=36.5
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcC--cEEEEEeCCCHH
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAG--VKLIAVGVGTPN 145 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~g--v~lv~Is~~~~~ 145 (231)
++.++++|++.||+.|+...|.+.+...++++.+ +.+.-|.++...
T Consensus 49 ~~~~lv~f~a~wC~~Ck~~~p~~~~~a~~~~~~~~~i~~~~vd~~~~~ 96 (477)
T PTZ00102 49 NEIVLVKFYAPWCGHCKRLAPEYKKAAKMLKEKKSEIVLASVDATEEM 96 (477)
T ss_pred CCcEEEEEECCCCHHHHHhhHHHHHHHHHHHhcCCcEEEEEEECCCCH
Confidence 3677888889999999999999999988887544 667777766543
No 137
>PF13728 TraF: F plasmid transfer operon protein
Probab=96.31 E-value=0.007 Score=50.80 Aligned_cols=61 Identities=25% Similarity=0.438 Sum_probs=44.6
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeecCcchHHHHhCCc
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
..+++||+ ..|++|..+.|-|..+.+++ |+.|+.||.|.... -.||. .. ++..+.+.||+.
T Consensus 122 ~gL~~F~~-~~C~~C~~~~pil~~~~~~y---g~~v~~vs~DG~~~-------~~fp~---~~-~~~g~~~~l~v~ 182 (215)
T PF13728_consen 122 YGLFFFYR-SDCPYCQQQAPILQQFADKY---GFSVIPVSLDGRPI-------PSFPN---PR-PDPGQAKRLGVK 182 (215)
T ss_pred eEEEEEEc-CCCchhHHHHHHHHHHHHHh---CCEEEEEecCCCCC-------cCCCC---CC-CCHHHHHHcCCC
Confidence 66777775 48999999999999998776 89999999885310 13552 11 256677788885
No 138
>PRK13703 conjugal pilus assembly protein TraF; Provisional
Probab=96.27 E-value=0.0066 Score=51.99 Aligned_cols=39 Identities=21% Similarity=0.318 Sum_probs=34.2
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
..+++||+ ..||+|....|-|+.+.+++ |+.|++||.|.
T Consensus 145 ~GL~fFy~-s~Cp~C~~~aPil~~fa~~y---g~~v~~VS~DG 183 (248)
T PRK13703 145 YGLMFFYR-GQDPIDGQLAQVINDFRDTY---GLSVIPVSVDG 183 (248)
T ss_pred ceEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCC
Confidence 77888886 67999999999999998765 79999999875
No 139
>TIGR01130 ER_PDI_fam protein disulfide isomerases, eukaryotic. Members of this family have at least two protein-disulfide domains, each similar to thioredoxin but with the redox-active disulfide in the motif PWCGHCK, and an ER retention signal at the extreme C-terminus (KDEL, HDEL, and similar motifs).
Probab=96.14 E-value=0.011 Score=54.29 Aligned_cols=45 Identities=18% Similarity=0.237 Sum_probs=38.1
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhc--CcEEEEEeCCCH
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSA--GVKLIAVGVGTP 144 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~--gv~lv~Is~~~~ 144 (231)
++.+|++|++.||+.|+...|.+.++.+.+... ++.++.|.++..
T Consensus 364 ~~~vlv~f~a~wC~~C~~~~p~~~~~~~~~~~~~~~i~~~~id~~~n 410 (462)
T TIGR01130 364 TKDVLVEFYAPWCGHCKNLAPIYEELAEKYKDAESDVVIAKMDATAN 410 (462)
T ss_pred CCeEEEEEECCCCHhHHHHHHHHHHHHHHhhcCCCcEEEEEEECCCC
Confidence 477788888999999999999999999999862 688888887654
No 140
>TIGR02739 TraF type-F conjugative transfer system pilin assembly protein TraF. This protein is part of a large group of proteins involved in conjugative transfer of plasmid DNA, specifically the F-type system. This protein has been predicted to contain a thioredoxin fold and has been shown to be localized to the periplasm. Unlike the related protein TrbB (TIGR02738), TraF does not contain a conserved pair of cysteines and has been shown not to function as a thiol disulfide isomerase by complementation of an Ecoli DsbA defect. The protein is believed to be involved in pilin assembly. Even more closely related than TrbB is a clade of genes (TIGR02740) which do contain the CXXC motif, but it is unclear whether these genes are involved in type-F conjugation systems per se.
Probab=96.06 E-value=0.0097 Score=51.20 Aligned_cols=62 Identities=16% Similarity=0.222 Sum_probs=44.0
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
..+++||+ ..||+|....|-|+.+.+++ |+.|++||.|... .-+||. .. ++....+.+|+..
T Consensus 152 ~gL~fFy~-~~C~~C~~~apil~~fa~~y---gi~v~~VS~DG~~-------~p~fp~---~~-~d~gqa~~l~v~~ 213 (256)
T TIGR02739 152 YGLFFFYR-GKSPISQKMAPVIQAFAKEY---GISVIPISVDGTL-------IPGLPN---SR-SDSGQAQHLGVKY 213 (256)
T ss_pred eeEEEEEC-CCCchhHHHHHHHHHHHHHh---CCeEEEEecCCCC-------CCCCCC---cc-CChHHHHhcCCcc
Confidence 67777775 67999999999999998765 7999999988531 012552 11 2445566777743
No 141
>PTZ00062 glutaredoxin; Provisional
Probab=95.99 E-value=0.014 Score=48.59 Aligned_cols=40 Identities=13% Similarity=0.131 Sum_probs=31.6
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~ 142 (231)
..+|++|++.|||.|+...+-|.++.+++. .++++-|..+
T Consensus 18 g~~vl~f~a~w~~~C~~m~~vl~~l~~~~~--~~~F~~V~~d 57 (204)
T PTZ00062 18 GKLVLYVKSSKEPEYEQLMDVCNALVEDFP--SLEFYVVNLA 57 (204)
T ss_pred CcEEEEEeCCCCcchHHHHHHHHHHHHHCC--CcEEEEEccc
Confidence 456777789999999999999999998874 3666666543
No 142
>cd02988 Phd_like_VIAF Phosducin (Phd)-like family, Viral inhibitor of apoptosis (IAP)-associated factor (VIAF) subfamily; VIAF is a Phd-like protein that functions in caspase activation during apoptosis. It was identified as an IAP binding protein through a screen of a human B-cell library using a prototype IAP. VIAF lacks a consensus IAP binding motif and while it does not function as an IAP antagonist, it still plays a regulatory role in the complete activation of caspases. VIAF itself is a substrate for IAP-mediated ubiquitination, suggesting that it may be a target of IAPs in the prevention of cell death. The similarity of VIAF to Phd points to a potential role distinct from apoptosis regulation. Phd functions as a cytosolic regulator of G protein by specifically binding to G protein betagamma (Gbg)-subunits. The C-terminal domain of Phd adopts a thioredoxin fold, but it does not contain a CXXC motif. Phd interacts with G protein beta mostly through the N-terminal helical domain.
Probab=95.82 E-value=0.018 Score=47.44 Aligned_cols=41 Identities=27% Similarity=0.323 Sum_probs=34.2
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
..||+.|++.||+.|+...+.|.+++.++. .++++-|..+.
T Consensus 103 ~~VVV~Fya~wc~~C~~m~~~l~~LA~k~~--~vkFvkI~ad~ 143 (192)
T cd02988 103 TWVVVHLYKDGIPLCRLLNQHLSELARKFP--DTKFVKIISTQ 143 (192)
T ss_pred CEEEEEEECCCCchHHHHHHHHHHHHHHCC--CCEEEEEEhHH
Confidence 467777779999999999999999999885 48888888654
No 143
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.81 E-value=0.039 Score=45.96 Aligned_cols=43 Identities=7% Similarity=0.001 Sum_probs=31.3
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
++++|..|++.||++|+...+.+.++..+. ..+.+.-|..+..
T Consensus 133 ~pv~I~~F~a~~C~~C~~~~~~l~~l~~~~--~~i~~~~vD~~~~ 175 (215)
T TIGR02187 133 EPVRIEVFVTPTCPYCPYAVLMAHKFALAN--DKILGEMIEANEN 175 (215)
T ss_pred CCcEEEEEECCCCCCcHHHHHHHHHHHHhc--CceEEEEEeCCCC
Confidence 477888788999999998777777766542 3466666776643
No 144
>cd03026 AhpF_NTD_C TRX-GRX-like family, Alkyl hydroperoxide reductase F subunit (AhpF) N-terminal domain (NTD) subfamily, C-terminal TRX-fold subdomain; AhpF is a homodimeric flavoenzyme which catalyzes the NADH-dependent reduction of the peroxiredoxin AhpC, which then reduces hydrogen peroxide and organic hydroperoxides. AhpF contains an NTD containing two contiguous TRX-fold subdomains similar to Pyrococcus furiosus protein disulfide oxidoreductase (PfPDO). It also contains a catalytic core similar to TRX reductase containing FAD and NADH binding domains with an active site disulfide. The proposed mechanism of action of AhpF is similar to a TRX/TRX reductase system. The flow of reducing equivalents goes from NADH - catalytic core of AhpF - NTD of AhpF - AhpC - peroxide substrates. The catalytic CXXC motif of the NTD of AhpF is contained in its C-terminal TRX subdomain.
Probab=95.72 E-value=0.044 Score=39.32 Aligned_cols=43 Identities=12% Similarity=0.096 Sum_probs=34.2
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
+++-|.+|.+.||++|..-.+-+.++..++. ++++..|..++.
T Consensus 12 ~pv~i~~F~~~~C~~C~~~~~~~~~l~~~~~--~i~~~~vd~~~~ 54 (89)
T cd03026 12 GPINFETYVSLSCHNCPDVVQALNLMAVLNP--NIEHEMIDGALF 54 (89)
T ss_pred CCEEEEEEECCCCCCcHHHHHHHHHHHHHCC--CceEEEEEhHhC
Confidence 4888888889999999988888888776553 588888886654
No 145
>PF07976 Phe_hydrox_dim: Phenol hydroxylase, C-terminal dimerisation domain ; InterPro: IPR012941 Phenol hydroxylase is a homodimer which hydroxylates phenol to catechol, or similar products. The enzyme is comprised of three domains. The first two domains form the active site. The third domain, this domain, is involved in forming the dimerisation interface. The domain adopts a thioredoxin-like fold [].; PDB: 2DKH_A 2DKI_A 1PN0_A 1FOH_D.
Probab=95.40 E-value=0.044 Score=44.20 Aligned_cols=112 Identities=17% Similarity=0.204 Sum_probs=63.5
Q ss_pred CCCCCCCCCCcCCeEEEC-CCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHH-------Hhhh------
Q 026909 66 TEFPANVGDLLGDFSIFT-AAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKA-------RFDS------ 131 (231)
Q Consensus 66 ~~~~~~vG~~ap~f~l~d-~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~-------~l~~------ 131 (231)
.+..+.+|..+|+..+.. .+|+++.|.+...-....-|++|-...-.+.+...+..|.+..+ .|..
T Consensus 26 ~a~~l~~G~Rlp~~~v~r~aD~~p~~l~~~l~sdGrfri~vFagd~~~~~~~~~l~~l~~~L~~~~s~~~r~~~~~~~~~ 105 (169)
T PF07976_consen 26 LAGGLRPGRRLPSAKVVRHADGNPVHLQDDLPSDGRFRILVFAGDISLPEQLSRLSALADYLESPSSFLSRFTPKDRDPD 105 (169)
T ss_dssp GBTTS-TTCB----EEEETTTTEEEEGGGG--SSS-EEEEEEEETTTTCHCCCHHHHHHHHHHSTTSHHHHHSBTTS-TT
T ss_pred cccCcCCccccCCceEEEEcCCCChhHhhhcccCCCEEEEEEeCCCccchhHHHHHHHHHHHHhcchHHHhcCCCCCCCC
Confidence 567799999999999987 69999999986643223677777766666666555555555443 3332
Q ss_pred cCcEEEEEeCCCHH--HHHHHHh-------cCCCCCcceeecC------cchHHHHhCCcc
Q 026909 132 AGVKLIAVGVGTPN--KAQILAE-------RLPFPMDCLYADP------DRKVYNLLGLYH 177 (231)
Q Consensus 132 ~gv~lv~Is~~~~~--~~~~~~~-------~~~fp~~~vl~D~------~~~~~~~~g~~~ 177 (231)
.-+.++.|...... .+.++-+ ..++....||+|. .++.|+.||+.+
T Consensus 106 s~~~~~~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~vy~Dd~~~~~~~g~~y~~~Gid~ 166 (169)
T PF07976_consen 106 SVFDVLLIHSSPRDEVELFDLPEIFRPFDGKRGWDYWKVYVDDESYHSGHGDAYEKYGIDR 166 (169)
T ss_dssp SSEEEEEEESS-CCCS-GGGS-CCCS-EETTTTC--SSEEE-S-SSSSTT--HHHHCTBBT
T ss_pred CeeEEEEEecCCCCceeHHHCcHhhCcccCCCCccceeEEecCcccccCcccHHHhhCCCc
Confidence 23888899876422 2222222 2333333489985 488999999854
No 146
>TIGR02187 GlrX_arch Glutaredoxin-like domain protein. This family of archaeal proteins contains a C-terminal domain with homology to bacterial and eukaryotic glutaredoxins, including a CPYC motif. There is an N-terminal domain which has even more distant homology to glutaredoxins. The name "glutaredoxin" may be inappropriate in the sense of working in tandem with glutathione and glutathione reductase which may not be present in the archaea. The overall domain structure appears to be related to bacterial alkylhydroperoxide reductases, but the homology may be distant enough that the function of this family is wholly different.
Probab=95.30 E-value=0.054 Score=45.15 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=30.1
Q ss_pred cEEEEEec--CCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC
Q 026909 101 VAVVALLR--HFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (231)
Q Consensus 101 ~~vL~f~r--~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~ 142 (231)
..+++|+- +.||+.|+...|-+.++.+++. ++++..|..|
T Consensus 21 ~~i~~f~~~~a~wC~~C~~~~p~l~~la~~~~--~~~i~~v~vd 62 (215)
T TIGR02187 21 VEIVVFTDNDKEGCQYCKETEQLLEELSEVSP--KLKLEIYDFD 62 (215)
T ss_pred eEEEEEcCCCCCCCCchHHHHHHHHHHHhhCC--CceEEEEecC
Confidence 55556554 3999999999999999988874 4555666655
No 147
>PHA02125 thioredoxin-like protein
Probab=95.21 E-value=0.067 Score=36.80 Aligned_cols=33 Identities=15% Similarity=0.247 Sum_probs=22.7
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
++.|.+.||+.|+...+.|.+.. +.++-|..+.
T Consensus 2 iv~f~a~wC~~Ck~~~~~l~~~~-------~~~~~vd~~~ 34 (75)
T PHA02125 2 IYLFGAEWCANCKMVKPMLANVE-------YTYVDVDTDE 34 (75)
T ss_pred EEEEECCCCHhHHHHHHHHHHHh-------heEEeeeCCC
Confidence 56677999999999888875431 3455555544
No 148
>TIGR02196 GlrX_YruB Glutaredoxin-like protein, YruB-family. This glutaredoxin-like protein family contains the conserved CxxC motif and includes the Clostridium pasteurianum protein YruB which has been cloned from a rubredoxin operon. Somewhat related to NrdH, it is unknown whether this protein actually interacts with glutathione/glutathione reducatase, or, like NrdH, some other reductant system.
Probab=95.12 E-value=0.14 Score=33.99 Aligned_cols=51 Identities=16% Similarity=0.235 Sum_probs=34.0
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC-HHHHHHHHhc---CCCCCcceeec
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILAER---LPFPMDCLYAD 164 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~-~~~~~~~~~~---~~fp~~~vl~D 164 (231)
+.+|.+.|||.|+...+.|.+ .++.+..|..++ ....+++.+. ...| ++.+
T Consensus 2 i~lf~~~~C~~C~~~~~~l~~-------~~i~~~~vdi~~~~~~~~~~~~~~~~~~vP---~~~~ 56 (74)
T TIGR02196 2 VKVYTTPWCPPCKKAKEYLTS-------KGIAFEEIDVEKDSAAREEVLKVLGQRGVP---VIVI 56 (74)
T ss_pred EEEEcCCCChhHHHHHHHHHH-------CCCeEEEEeccCCHHHHHHHHHHhCCCccc---EEEE
Confidence 456779999999987665543 578888887764 3444555553 4577 5554
No 149
>TIGR02200 GlrX_actino Glutaredoxin-like protein. This family of glutaredoxin-like proteins is limited to the Actinobacteria and contains the conserved CxxC motif.
Probab=95.07 E-value=0.073 Score=36.05 Aligned_cols=36 Identities=17% Similarity=0.279 Sum_probs=23.7
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK 146 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~ 146 (231)
+..|++.|||.|+...+.|.+ .++..-.|..++...
T Consensus 2 v~ly~~~~C~~C~~~~~~L~~-------~~~~~~~idi~~~~~ 37 (77)
T TIGR02200 2 ITVYGTTWCGYCAQLMRTLDK-------LGAAYEWVDIEEDEG 37 (77)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCceEEEeCcCCHh
Confidence 345669999999997766544 355555666654333
No 150
>KOG0908 consensus Thioredoxin-like protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.20 E-value=0.063 Score=45.80 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=28.4
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhh
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFD 130 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~ 130 (231)
++.|++-|.+.||++|+...|-+.++..++.
T Consensus 21 ~k~v~Vdfta~wCGPCk~IaP~Fs~lankYp 51 (288)
T KOG0908|consen 21 GKLVVVDFTASWCGPCKRIAPIFSDLANKYP 51 (288)
T ss_pred ceEEEEEEEecccchHHhhhhHHHHhhhhCc
Confidence 4889999999999999999999999998884
No 151
>PRK11200 grxA glutaredoxin 1; Provisional
Probab=94.13 E-value=0.21 Score=35.04 Aligned_cols=38 Identities=16% Similarity=0.300 Sum_probs=28.5
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
|..|...|||+|..-..-|.++..++ .|+...-|..+.
T Consensus 3 v~iy~~~~C~~C~~a~~~L~~l~~~~--~~i~~~~idi~~ 40 (85)
T PRK11200 3 VVIFGRPGCPYCVRAKELAEKLSEER--DDFDYRYVDIHA 40 (85)
T ss_pred EEEEeCCCChhHHHHHHHHHhhcccc--cCCcEEEEECCC
Confidence 45566899999999888888877654 467777776653
No 152
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=93.74 E-value=0.16 Score=46.00 Aligned_cols=55 Identities=22% Similarity=0.182 Sum_probs=38.1
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
..++.|| ++||+.|.+..+.+.++...++. -+.+..|.++....+.....-.+||
T Consensus 49 ~~~v~fy-apwc~~c~~l~~~~~~~~~~l~~-~~~~~~vd~~~~~~~~~~y~i~gfP 103 (383)
T KOG0191|consen 49 PWLVEFY-APWCGHCKKLAPTYKKLAKALKG-KVKIGAVDCDEHKDLCEKYGIQGFP 103 (383)
T ss_pred ceEEEEE-CCCCcchhhhchHHHHHHHHhcC-ceEEEEeCchhhHHHHHhcCCccCc
Confidence 4555555 99999999999999998888875 3455556665555444444445566
No 153
>PF14595 Thioredoxin_9: Thioredoxin; PDB: 1Z6N_A.
Probab=93.74 E-value=0.1 Score=40.24 Aligned_cols=63 Identities=10% Similarity=0.093 Sum_probs=36.7
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC-CHHHHHHHHh--cCCCCCcceeecCc
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG-TPNKAQILAE--RLPFPMDCLYADPD 166 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~-~~~~~~~~~~--~~~fp~~~vl~D~~ 166 (231)
+.-++.+-.+|||.|...+|.|.++.+... ++++=.|..| +.+.+.+|.. ....|.- |+.|.+
T Consensus 42 ~~~ilvi~e~WCgD~~~~vP~l~kiae~~p--~i~~~~i~rd~~~el~~~~lt~g~~~IP~~-I~~d~~ 107 (129)
T PF14595_consen 42 PYNILVITETWCGDCARNVPVLAKIAEANP--NIEVRIILRDENKELMDQYLTNGGRSIPTF-IFLDKD 107 (129)
T ss_dssp -EEEEEE--TT-HHHHHHHHHHHHHHHH-T--TEEEEEE-HHHHHHHTTTTTT-SS--SSEE-EEE-TT
T ss_pred CcEEEEEECCCchhHHHHHHHHHHHHHhCC--CCeEEEEEecCChhHHHHHHhCCCeecCEE-EEEcCC
Confidence 445555559999999999999999998753 5666666665 3455666655 2334421 666755
No 154
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=93.67 E-value=0.1 Score=48.76 Aligned_cols=55 Identities=22% Similarity=0.267 Sum_probs=39.9
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhc--CcEEEEEeCCCHHHHHHHHhc---CCCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSA--GVKLIAVGVGTPNKAQILAER---LPFPM 158 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~--gv~lv~Is~~~~~~~~~~~~~---~~fp~ 158 (231)
..+|+-|-++||..|...+|++.+.+..++.. .+.+.-|-+... ..++.+ -+||.
T Consensus 43 ~~vlVeFYAPWCghck~LaPey~kAA~~Lke~~s~i~LakVDat~~---~~~~~~y~v~gyPT 102 (493)
T KOG0190|consen 43 EFVLVEFYAPWCGHCKALAPEYEKAATELKEEGSPVKLAKVDATEE---SDLASKYEVRGYPT 102 (493)
T ss_pred ceEEEEEEchhhhhhhhhCcHHHHHHHHhhccCCCceeEEeecchh---hhhHhhhcCCCCCe
Confidence 55666666999999999999999999999987 566666654433 344442 55774
No 155
>PF06110 DUF953: Eukaryotic protein of unknown function (DUF953); InterPro: IPR010357 This family consists of several hypothetical eukaryotic proteins of unknown function that are thioredoxin-like.; PDB: 1V9W_A 1WOU_A.
Probab=93.50 E-value=0.2 Score=38.13 Aligned_cols=44 Identities=16% Similarity=0.283 Sum_probs=30.0
Q ss_pred cEEEEEec------CCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 101 VAVVALLR------HFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 101 ~~vL~f~r------~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
++.|+|+- .+|||.|+.-.|-+.+..... ..+..+|-|.+++..
T Consensus 21 ~~fl~F~gs~d~~g~sWCPDC~~aep~v~~~f~~~-~~~~~lv~v~VG~r~ 70 (119)
T PF06110_consen 21 PLFLLFTGSKDETGQSWCPDCVAAEPVVEKAFKKA-PENARLVYVEVGDRP 70 (119)
T ss_dssp EEEEEEE--B-TTS-BSSHHHHHHHHHHHHHHHH--STTEEEEEEE---HH
T ss_pred eEEEEEEccCCCCCCcccHHHHHHHHHHHHHHHhC-CCCceEEEEEcCCHH
Confidence 56666663 259999999999999887763 347888888887754
No 156
>TIGR02180 GRX_euk Glutaredoxin. This model represents eukaryotic glutaredoxins and includes sequences from fungi, plants and metazoans as well as viruses.
Probab=93.38 E-value=0.24 Score=34.06 Aligned_cols=55 Identities=13% Similarity=0.255 Sum_probs=33.1
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC-HHHHHHHH-hc---CCCCCcceeec
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILA-ER---LPFPMDCLYAD 164 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~-~~~~~~~~-~~---~~fp~~~vl~D 164 (231)
+.|...|||+|+...+.|.+.. +. ..+.++-|..++ ...++++. +. ..+|. ++.|
T Consensus 2 ~~f~~~~Cp~C~~~~~~L~~~~--i~-~~~~~~~v~~~~~~~~~~~~l~~~~g~~~vP~--v~i~ 61 (84)
T TIGR02180 2 VVFSKSYCPYCKKAKEILAKLN--VK-PAYEVVELDQLSNGSEIQDYLEEITGQRTVPN--IFIN 61 (84)
T ss_pred EEEECCCChhHHHHHHHHHHcC--CC-CCCEEEEeeCCCChHHHHHHHHHHhCCCCCCe--EEEC
Confidence 4455899999999888888764 11 126677776653 33334433 32 45673 5544
No 157
>PF00462 Glutaredoxin: Glutaredoxin; InterPro: IPR002109 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This entry represents Glutaredoxin.; GO: 0009055 electron carrier activity, 0015035 protein disulfide oxidoreductase activity, 0045454 cell redox homeostasis; PDB: 1QFN_A 1GRX_A 1EGO_A 1EGR_A 3RHC_A 3RHB_A 3IPZ_A 1NHO_A 3GX8_A 3D5J_A ....
Probab=93.35 E-value=0.33 Score=31.59 Aligned_cols=52 Identities=27% Similarity=0.470 Sum_probs=34.4
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH-HHHHHHHh---cCCCCCcceeec
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP-NKAQILAE---RLPFPMDCLYAD 164 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~-~~~~~~~~---~~~fp~~~vl~D 164 (231)
++.|...+||.|......| ++.|+..-.+..++. +..+++.+ ...+|. ++.|
T Consensus 1 V~vy~~~~C~~C~~~~~~L-------~~~~i~y~~~dv~~~~~~~~~l~~~~g~~~~P~--v~i~ 56 (60)
T PF00462_consen 1 VVVYTKPGCPYCKKAKEFL-------DEKGIPYEEVDVDEDEEAREELKELSGVRTVPQ--VFID 56 (60)
T ss_dssp EEEEESTTSHHHHHHHHHH-------HHTTBEEEEEEGGGSHHHHHHHHHHHSSSSSSE--EEET
T ss_pred cEEEEcCCCcCHHHHHHHH-------HHcCCeeeEcccccchhHHHHHHHHcCCCccCE--EEEC
Confidence 3556689999998866555 456788888887765 34444444 377883 5554
No 158
>cd02958 UAS UAS family; UAS is a domain of unknown function. Most members of this family are uncharacterized proteins with similarity to FAS-associated factor 1 (FAF1) and ETEA because of the presence of a UAS domain N-terminal to a ubiquitin-associated UBX domain. FAF1 is a longer protein, compared to the other members of this family, having additional N-terminal domains, a ubiquitin-associated UBA domain and a nuclear targeting domain. FAF1 is an apoptotic signaling molecule that acts downstream in the Fas signal transduction pathway. It interacts with the cytoplasmic domain of Fas, but not to a Fas mutant that is deficient in signal transduction. ETEA is the protein product of a highly expressed gene in T-cells and eosinophils of atopic dermatitis patients. The presence of the ubiquitin-associated UBX domain in the proteins of this family suggests the possibility of their involvement in ubiquitination. Recently, FAF1 has been shown to interact with valosin-containing protein (VCP),
Probab=93.18 E-value=0.42 Score=35.42 Aligned_cols=66 Identities=12% Similarity=0.053 Sum_probs=40.5
Q ss_pred CcEEEEEecCCCCcchHHHHHHH-H--HHHHHhhhcCcEEEEEeCCCHHHHHHHHh---cCCCCCcceeecC-cch
Q 026909 100 GVAVVALLRHFGCPCCWELASAL-K--ESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADP-DRK 168 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L-~--~~~~~l~~~gv~lv~Is~~~~~~~~~~~~---~~~fp~~~vl~D~-~~~ 168 (231)
++.+++++.+.||+.|....... . +..+.++ .++-++.+..++++ ..++.+ -..||.- ++.|+ ++.
T Consensus 17 ~K~llv~~~~~~c~~c~~~~~~vl~~~~v~~~l~-~~~v~~~~d~~~~e-~~~~~~~~~~~~~P~~-~~i~~~~g~ 89 (114)
T cd02958 17 KKWLLVYLQSEDEFDSQVLNRDLWSNESVKEFIR-ENFIFWQCDIDSSE-GQRFLQSYKVDKYPHI-AIIDPRTGE 89 (114)
T ss_pred CceEEEEEecCCcchHHHHHHHHcCCHHHHHHHH-hCEEEEEecCCCcc-HHHHHHHhCccCCCeE-EEEeCccCc
Confidence 58888889899999998866542 2 2333343 35556666666543 344554 2346643 77788 444
No 159
>cd02976 NrdH NrdH-redoxin (NrdH) family; NrdH is a small monomeric protein with a conserved redox active CXXC motif within a TRX fold, characterized by a glutaredoxin (GRX)-like sequence and TRX-like activity profile. In vitro, it displays protein disulfide reductase activity that is dependent on TRX reductase, not glutathione (GSH). It is part of the NrdHIEF operon, where NrdEF codes for class Ib ribonucleotide reductase (RNR-Ib), an efficient enzyme at low oxygen levels. Under these conditions when GSH is mostly conjugated to spermidine, NrdH can still function and act as a hydrogen donor for RNR-Ib. It has been suggested that the NrdHEF system may be the oldest RNR reducing system, capable of functioning in a microaerophilic environment, where GSH was not yet available. NrdH from Corynebacterium ammoniagenes can form domain-swapped dimers, although it is unknown if this happens in vivo. Domain-swapped dimerization, which results in the blocking of the TRX reductase binding site, cou
Probab=93.11 E-value=0.57 Score=30.85 Aligned_cols=53 Identities=25% Similarity=0.395 Sum_probs=32.8
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC-HHHHHHHHh---cCCCCCcceeecCc
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILAE---RLPFPMDCLYADPD 166 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~-~~~~~~~~~---~~~fp~~~vl~D~~ 166 (231)
+..|...|||.|......|.+ .++....+..+. .....++.+ ...+| ++.+.+
T Consensus 2 v~l~~~~~c~~c~~~~~~l~~-------~~i~~~~~~i~~~~~~~~~~~~~~~~~~vP---~i~~~~ 58 (73)
T cd02976 2 VTVYTKPDCPYCKATKRFLDE-------RGIPFEEVDVDEDPEALEELKKLNGYRSVP---VVVIGD 58 (73)
T ss_pred EEEEeCCCChhHHHHHHHHHH-------CCCCeEEEeCCCCHHHHHHHHHHcCCcccC---EEEECC
Confidence 345568899999985555443 466666677664 344455554 35688 666543
No 160
>cd03023 DsbA_Com1_like DsbA family, Com1-like subfamily; composed of proteins similar to Com1, a 27-kDa outer membrane-associated immunoreactive protein originally found in both acute and chronic disease strains of the pathogenic bacteria Coxiella burnetti. It contains a CXXC motif, assumed to be imbedded in a DsbA-like structure. Its homology to DsbA suggests that the protein is a protein disulfide oxidoreductase. The role of such a protein in pathogenesis is unknown.
Probab=92.94 E-value=0.19 Score=38.46 Aligned_cols=38 Identities=18% Similarity=0.342 Sum_probs=28.5
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEE
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAV 139 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~I 139 (231)
+++.|+.|.-.+||+|+...+.+.++..++.+ ++++.+
T Consensus 5 a~~~i~~f~D~~Cp~C~~~~~~l~~~~~~~~~--~~~~~~ 42 (154)
T cd03023 5 GDVTIVEFFDYNCGYCKKLAPELEKLLKEDPD--VRVVFK 42 (154)
T ss_pred CCEEEEEEECCCChhHHHhhHHHHHHHHHCCC--ceEEEE
Confidence 46777777799999999999999887766543 444443
No 161
>TIGR02190 GlrX-dom Glutaredoxin-family domain. This C-terminal domain with homology to glutaredoxin is fused to an N-terminal peroxiredoxin-like domain.
Probab=92.11 E-value=0.64 Score=32.16 Aligned_cols=47 Identities=23% Similarity=0.511 Sum_probs=30.3
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHh---cCCCC
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFP 157 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~---~~~fp 157 (231)
|..|...|||+|+.--..|. +.|+....|..+......++.+ ...+|
T Consensus 10 V~ly~~~~Cp~C~~ak~~L~-------~~gi~y~~idi~~~~~~~~~~~~~g~~~vP 59 (79)
T TIGR02190 10 VVVFTKPGCPFCAKAKATLK-------EKGYDFEEIPLGNDARGRSLRAVTGATTVP 59 (79)
T ss_pred EEEEECCCCHhHHHHHHHHH-------HcCCCcEEEECCCChHHHHHHHHHCCCCcC
Confidence 34555899999998666654 4567777777765444445544 35677
No 162
>cd03029 GRX_hybridPRX5 Glutaredoxin (GRX) family, PRX5 hybrid subfamily; composed of hybrid proteins containing peroxiredoxin (PRX) and GRX domains, which is found in some pathogenic bacteria and cyanobacteria. PRXs are thiol-specific antioxidant (TSA) proteins that confer a protective antioxidant role in cells through their peroxidase activity in which hydrogen peroxide, peroxynitrate, and organic hydroperoxides are reduced and detoxified using reducing equivalents derived from either thioredoxin, glutathione, trypanothione and AhpF. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins. PRX-GRX hybrid proteins from Haemophilus influenza and Neisseria meningitis exhibit GSH-dependent peroxidase activity. The flow of reducing equivalents in the catalytic cycle of the hybrid protein goes from NADPH - GSH reductase - GSH - GRX domain of hybrid - PRX domain of hybrid - peroxide substrate.
Probab=92.10 E-value=0.61 Score=31.46 Aligned_cols=51 Identities=24% Similarity=0.532 Sum_probs=30.3
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHh---cCCCCCcceeec
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYAD 164 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~---~~~fp~~~vl~D 164 (231)
..|-..+||+|..-...|. +.|+....+..+.....+++.+ ...+|. ++.|
T Consensus 4 ~lys~~~Cp~C~~ak~~L~-------~~~i~~~~~~v~~~~~~~~~~~~~g~~~vP~--ifi~ 57 (72)
T cd03029 4 SLFTKPGCPFCARAKAALQ-------ENGISYEEIPLGKDITGRSLRAVTGAMTVPQ--VFID 57 (72)
T ss_pred EEEECCCCHHHHHHHHHHH-------HcCCCcEEEECCCChhHHHHHHHhCCCCcCe--EEEC
Confidence 3455799999998755555 3466666666554333334433 356773 5555
No 163
>smart00594 UAS UAS domain.
Probab=91.83 E-value=1 Score=33.94 Aligned_cols=65 Identities=17% Similarity=0.136 Sum_probs=41.4
Q ss_pred CcEEEEEecCCCCcchHHHHHHHH---HHHHHhhhcCcEEEEEeCCCHHHHHHHHhc---CCCCCcceeecCcc
Q 026909 100 GVAVVALLRHFGCPCCWELASALK---ESKARFDSAGVKLIAVGVGTPNKAQILAER---LPFPMDCLYADPDR 167 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~---~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~---~~fp~~~vl~D~~~ 167 (231)
++.+++++.+.||+.|.......- +..+.+ +.++-++.+...+.+. .++.+. .+||.- ++.|+++
T Consensus 27 ~K~~lv~~~~~~c~~c~~~~r~vl~~~~V~~~i-~~~fv~~~~dv~~~eg-~~l~~~~~~~~~P~~-~~l~~~~ 97 (122)
T smart00594 27 RRLLWLYLHSQDSPDSQVFNRDVLCNEAVKSLI-RENFIFWQVDVDTSEG-QRVSQFYKLDSFPYV-AIVDPRT 97 (122)
T ss_pred cCCEEEEEeCCCCchHHHHHHHHccCHHHHHHH-HcCEEEEEecCCChhH-HHHHHhcCcCCCCEE-EEEecCC
Confidence 578888888999999998776542 223334 3456666666666554 344442 456743 6668775
No 164
>KOG0191 consensus Thioredoxin/protein disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=91.74 E-value=0.36 Score=43.80 Aligned_cols=56 Identities=18% Similarity=0.158 Sum_probs=41.8
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhh-cCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDS-AGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~-~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
..++.| -+.||+.|+..++.+.++...++. .++.+..+..+....+....+--.||
T Consensus 164 ~~lv~f-~aPwc~~ck~l~~~~~~~a~~~~~~~~v~~~~~d~~~~~~~~~~~~v~~~P 220 (383)
T KOG0191|consen 164 DWLVEF-YAPWCGHCKKLAPEWEKLAKLLKSKENVELGKIDATVHKSLASRLEVRGYP 220 (383)
T ss_pred ceEEEE-eccccHHhhhcChHHHHHHHHhccCcceEEEeeccchHHHHhhhhcccCCc
Confidence 445555 499999999999999999999984 77888888877555555555544555
No 165
>KOG3425 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.57 E-value=0.55 Score=35.69 Aligned_cols=35 Identities=23% Similarity=0.366 Sum_probs=27.4
Q ss_pred CCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 110 FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 110 ~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
+|||.|..-.|-+.+..... ..++.+|-|.+++-.
T Consensus 43 SWCPdCV~AEPvi~~alk~a-p~~~~~v~v~VG~rp 77 (128)
T KOG3425|consen 43 SWCPDCVAAEPVINEALKHA-PEDVHFVHVYVGNRP 77 (128)
T ss_pred cCCchHHHhhHHHHHHHHhC-CCceEEEEEEecCCC
Confidence 59999999999888776633 456888888888754
No 166
>PF13462 Thioredoxin_4: Thioredoxin; PDB: 3FEU_A 3HZ8_A 3DVW_A 3A3T_E 3GMF_A 1Z6M_A 3GYK_C 3BCK_A 3BD2_A 3BCI_A ....
Probab=91.51 E-value=0.59 Score=36.26 Aligned_cols=42 Identities=24% Similarity=0.445 Sum_probs=32.4
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHh-hhcCcEEEEEeC
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARF-DSAGVKLIAVGV 141 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l-~~~gv~lv~Is~ 141 (231)
.+++|..|.-..||+|....+.+.++.+++ +...+.++.+..
T Consensus 12 a~~~v~~f~d~~Cp~C~~~~~~~~~~~~~~i~~~~v~~~~~~~ 54 (162)
T PF13462_consen 12 APITVTEFFDFQCPHCAKFHEELEKLLKKYIDPGKVKFVFRPV 54 (162)
T ss_dssp TSEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTTTTEEEEEEES
T ss_pred CCeEEEEEECCCCHhHHHHHHHHhhhhhhccCCCceEEEEEEc
Confidence 467777777999999999999999888887 344577777755
No 167
>KOG0190 consensus Protein disulfide isomerase (prolyl 4-hydroxylase beta subunit) [Posttranslational modification, protein turnover, chaperones]
Probab=91.45 E-value=0.26 Score=46.21 Aligned_cols=33 Identities=21% Similarity=0.326 Sum_probs=28.8
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhc
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSA 132 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~ 132 (231)
++-||+-|-+.||+.|....|.+.++.+.+++.
T Consensus 384 ~KdVLvEfyAPWCgHCk~laP~~eeLAe~~~~~ 416 (493)
T KOG0190|consen 384 GKDVLVEFYAPWCGHCKALAPIYEELAEKYKDD 416 (493)
T ss_pred ccceEEEEcCcccchhhhhhhHHHHHHHHhcCC
Confidence 466777777999999999999999999999874
No 168
>PF09695 YtfJ_HI0045: Bacterial protein of unknown function (YtfJ_HI0045); InterPro: IPR006513 These are sequences from gammaproteobacteria that are related to the Escherichia coli protein, YtfJ.
Probab=91.35 E-value=2.1 Score=34.20 Aligned_cols=104 Identities=17% Similarity=0.177 Sum_probs=62.6
Q ss_pred CCCCCCcCCeEEECC-----CCCeE-----eccccccCCCCcEEEEEecCCCCcchHHHHHHHH-HHHHH-hhhcCcEEE
Q 026909 70 ANVGDLLGDFSIFTA-----AGEPV-----LFKDLWDQNEGVAVVALLRHFGCPCCWELASALK-ESKAR-FDSAGVKLI 137 (231)
Q Consensus 70 ~~vG~~ap~f~l~d~-----~G~~v-----~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~-~~~~~-l~~~gv~lv 137 (231)
+..|+++|.+.+.|. +|..+ +..++. |++-++++-+ +-+-..+.-..|. .+... |....++..
T Consensus 1 ~~~~~~~p~V~v~d~Gel~l~~~~~~y~~W~s~~l~----GKVrviq~iA-Gr~sake~N~~l~~aik~a~f~~d~yqtt 75 (160)
T PF09695_consen 1 ITLGQPVPPVTVADKGELILNGDKISYQPWNSAQLP----GKVRVIQHIA-GRSSAKEMNAPLIEAIKAAKFPHDKYQTT 75 (160)
T ss_pred CcCCCcCCceEecCCceEEEcCCcccccccCccccC----CCEEEEEEec-cCCchhHhhHHHHHHHHHcCCCccceeEE
Confidence 457889999988763 33333 334453 5788887743 4444444333333 33333 666667766
Q ss_pred E-EeCCCH-----HHHHHHHh--cCCCCCcceeecCcchHHHHhCCccc
Q 026909 138 A-VGVGTP-----NKAQILAE--RLPFPMDCLYADPDRKVYNLLGLYHG 178 (231)
Q Consensus 138 ~-Is~~~~-----~~~~~~~~--~~~fp~~~vl~D~~~~~~~~~g~~~g 178 (231)
. |+.++. .-++...+ +-.||...++.|.++.+-++|++...
T Consensus 76 tIiN~dDAi~gt~~fVrss~e~~kk~~p~s~~vlD~~G~~~~aW~L~~~ 124 (160)
T PF09695_consen 76 TIINLDDAIWGTGGFVRSSAEDSKKEFPWSQFVLDSNGVVRKAWQLQEE 124 (160)
T ss_pred EEEecccccccchHHHHHHHHHhhhhCCCcEEEEcCCCceeccccCCCC
Confidence 6 455542 12333333 23466556899999999999999653
No 169
>cd02066 GRX_family Glutaredoxin (GRX) family; composed of GRX, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known including human GRX1 and GRX2, as well as E. coli GRX1 and GRX3, which
Probab=90.07 E-value=1.3 Score=28.84 Aligned_cols=46 Identities=17% Similarity=0.364 Sum_probs=28.8
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH-HHHHHh---cCCCC
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK-AQILAE---RLPFP 157 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~-~~~~~~---~~~fp 157 (231)
..|-..|||.|+.....|.+. ++.+.-+..++... ...+.+ ...+|
T Consensus 3 ~ly~~~~Cp~C~~~~~~L~~~-------~i~~~~~di~~~~~~~~~l~~~~~~~~~P 52 (72)
T cd02066 3 VVFSKSTCPYCKRAKRLLESL-------GIEFEEIDILEDGELREELKELSGWPTVP 52 (72)
T ss_pred EEEECCCCHHHHHHHHHHHHc-------CCcEEEEECCCCHHHHHHHHHHhCCCCcC
Confidence 345588999999877766644 46666676665443 334443 24577
No 170
>cd03027 GRX_DEP Glutaredoxin (GRX) family, Dishevelled, Egl-10, and Pleckstrin (DEP) subfamily; composed of uncharacterized proteins containing a GRX domain and additional domains DEP and DUF547, both of which have unknown functions. GRX is a glutathione (GSH) dependent reductase containing a redox active CXXC motif in a TRX fold. It has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. By altering the redox state of target proteins, GRX is involved in many cellular functions.
Probab=90.01 E-value=2 Score=29.00 Aligned_cols=50 Identities=18% Similarity=0.493 Sum_probs=31.1
Q ss_pred EecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC-HHHHHHHHh---cCCCCCcceeec
Q 026909 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILAE---RLPFPMDCLYAD 164 (231)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~-~~~~~~~~~---~~~fp~~~vl~D 164 (231)
.|...+||.|+.-..-|. +.|+....+..+. +....++.+ ...+|. ++.|
T Consensus 5 ly~~~~C~~C~ka~~~L~-------~~gi~~~~~di~~~~~~~~el~~~~g~~~vP~--v~i~ 58 (73)
T cd03027 5 IYSRLGCEDCTAVRLFLR-------EKGLPYVEINIDIFPERKAELEERTGSSVVPQ--IFFN 58 (73)
T ss_pred EEecCCChhHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHHhCCCCcCE--EEEC
Confidence 444689999998666555 3577777777664 333444444 356673 4444
No 171
>TIGR00365 monothiol glutaredoxin, Grx4 family. The gene for the member of this glutaredoxin family in E. coli, originally designated ydhD, is now designated grxD. Its protein, Grx4, is a monothiol glutaredoxin similar to Grx5 of yeast, which is involved in iron-sulfur cluster formation.
Probab=89.89 E-value=1.6 Score=31.64 Aligned_cols=55 Identities=24% Similarity=0.239 Sum_probs=30.5
Q ss_pred cEEEEEecC----CCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHH-h---cCCCCCcceeec
Q 026909 101 VAVVALLRH----FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILA-E---RLPFPMDCLYAD 164 (231)
Q Consensus 101 ~~vL~f~r~----~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~-~---~~~fp~~~vl~D 164 (231)
.-|++|-.+ +|||+|..--.-|.+ .|+....|..++...+.+.. + ...+|. |+.|
T Consensus 12 ~~Vvvf~kg~~~~~~Cp~C~~ak~lL~~-------~~i~~~~~di~~~~~~~~~l~~~tg~~tvP~--vfi~ 74 (97)
T TIGR00365 12 NPVVLYMKGTPQFPQCGFSARAVQILKA-------CGVPFAYVNVLEDPEIRQGIKEYSNWPTIPQ--LYVK 74 (97)
T ss_pred CCEEEEEccCCCCCCCchHHHHHHHHHH-------cCCCEEEEECCCCHHHHHHHHHHhCCCCCCE--EEEC
Confidence 345555543 799999875555443 45666666654333333333 2 346774 5655
No 172
>cd03419 GRX_GRXh_1_2_like Glutaredoxin (GRX) family, GRX human class 1 and 2 (h_1_2)-like subfamily; composed of proteins similar to human GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes
Probab=89.88 E-value=1.2 Score=30.48 Aligned_cols=34 Identities=21% Similarity=0.316 Sum_probs=22.8
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
++|-..|||.|...-..|.+... .+..+=|..++
T Consensus 3 ~~y~~~~Cp~C~~~~~~l~~~~~-----~~~~~~v~~~~ 36 (82)
T cd03419 3 VVFSKSYCPYCKRAKSLLKELGV-----KPAVVELDQHE 36 (82)
T ss_pred EEEEcCCCHHHHHHHHHHHHcCC-----CcEEEEEeCCC
Confidence 45558999999987777776533 34555566553
No 173
>TIGR02194 GlrX_NrdH Glutaredoxin-like protein NrdH. NrdH-redoxin is a representative of a class of small redox proteins that contain a conserved CXXC motif and are characterized by a glutaredoxin-like amino acid sequence and thioredoxin-like activity profile. Unlike other the glutaredoxins to which it is most closely related, NrdH aparrently does not interact with glutathione/glutathione reductase, but rather with thioredoxin reductase to catalyze the reduction of ribonucleotide reductase.
Probab=89.79 E-value=1.5 Score=29.60 Aligned_cols=46 Identities=13% Similarity=0.270 Sum_probs=29.8
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH-HHHHHh--cCCCC
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK-AQILAE--RLPFP 157 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~-~~~~~~--~~~fp 157 (231)
.+|...+||.|+.....|. +.|+..-.|..++... ...+.+ ....|
T Consensus 2 ~ly~~~~Cp~C~~ak~~L~-------~~~i~~~~~di~~~~~~~~~~~~~g~~~vP 50 (72)
T TIGR02194 2 TVYSKNNCVQCKMTKKALE-------EHGIAFEEINIDEQPEAIDYVKAQGFRQVP 50 (72)
T ss_pred EEEeCCCCHHHHHHHHHHH-------HCCCceEEEECCCCHHHHHHHHHcCCcccC
Confidence 4667899999998776665 3577777777764433 333333 24567
No 174
>cd03028 GRX_PICOT_like Glutaredoxin (GRX) family, PKC-interacting cousin of TRX (PICOT)-like subfamily; composed of PICOT and GRX-PICOT-like proteins. The non-PICOT members of this family contain only the GRX-like domain, whereas PICOT contains an N-terminal TRX-like domain followed by one to three GRX-like domains. It is interesting to note that PICOT from plants contain three repeats of the GRX-like domain, metazoan proteins (except for insect) have two repeats, while fungal sequences contain only one copy of the domain. PICOT is a protein that interacts with protein kinase C (PKC) theta, a calcium independent PKC isoform selectively expressed in skeletal muscle and T lymphocytes. PICOT inhibits the activation of c-Jun N-terminal kinase and the transcription factors, AP-1 and NF-kB, induced by PKC theta or T-cell activating stimuli. Both GRX and TRX domains of PICOT are required for its activity. Characterized non-PICOT members of this family include CXIP1, a CAX-interacting protein
Probab=89.55 E-value=1.7 Score=30.91 Aligned_cols=46 Identities=24% Similarity=0.355 Sum_probs=25.7
Q ss_pred CCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHH-HHHHh---cCCCCCcceeec
Q 026909 110 FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA-QILAE---RLPFPMDCLYAD 164 (231)
Q Consensus 110 ~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~-~~~~~---~~~fp~~~vl~D 164 (231)
+|||+|..-..-|.+ .|+..-.|..+....+ .+..+ ...+|. |+.|
T Consensus 21 ~~Cp~C~~ak~~L~~-------~~i~y~~idv~~~~~~~~~l~~~~g~~tvP~--vfi~ 70 (90)
T cd03028 21 PRCGFSRKVVQILNQ-------LGVDFGTFDILEDEEVRQGLKEYSNWPTFPQ--LYVN 70 (90)
T ss_pred CCCcHHHHHHHHHHH-------cCCCeEEEEcCCCHHHHHHHHHHhCCCCCCE--EEEC
Confidence 699999876555544 3555555555433333 33333 356774 5555
No 175
>cd03418 GRX_GRXb_1_3_like Glutaredoxin (GRX) family, GRX bacterial class 1 and 3 (b_1_3)-like subfamily; composed of bacterial GRXs, approximately 10 kDa in size, and proteins containing a GRX or GRX-like domain. GRX is a glutathione (GSH) dependent reductase, catalyzing the disulfide reduction of target proteins such as ribonucleotide reductase. It contains a redox active CXXC motif in a TRX fold and uses a similar dithiol mechanism employed by TRXs for intramolecular disulfide bond reduction of protein substrates. Unlike TRX, GRX has preference for mixed GSH disulfide substrates, in which it uses a monothiol mechanism where only the N-terminal cysteine is required. The flow of reducing equivalents in the GRX system goes from NADPH - GSH reductase - GSH - GRX - protein substrates. By altering the redox state of target proteins, GRX is involved in many cellular functions including DNA synthesis, signal transduction and the defense against oxidative stress. Different classes are known i
Probab=89.25 E-value=2.4 Score=28.39 Aligned_cols=52 Identities=21% Similarity=0.457 Sum_probs=32.4
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC-HHHHHHHHhc---C-CCCCcceeec
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-PNKAQILAER---L-PFPMDCLYAD 164 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~-~~~~~~~~~~---~-~fp~~~vl~D 164 (231)
|..|...+||+|..-...|.+ .|+..-.|..+. ++...++.+. . .+|. ++.|
T Consensus 2 i~ly~~~~Cp~C~~ak~~L~~-------~~i~~~~i~i~~~~~~~~~~~~~~~~~~~vP~--v~i~ 58 (75)
T cd03418 2 VEIYTKPNCPYCVRAKALLDK-------KGVDYEEIDVDGDPALREEMINRSGGRRTVPQ--IFIG 58 (75)
T ss_pred EEEEeCCCChHHHHHHHHHHH-------CCCcEEEEECCCCHHHHHHHHHHhCCCCccCE--EEEC
Confidence 346668999999986655553 466666666654 4445555442 2 6773 5555
No 176
>COG0695 GrxC Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=89.05 E-value=1.5 Score=30.61 Aligned_cols=52 Identities=23% Similarity=0.506 Sum_probs=30.4
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC--CCHHHHHHHHhc----CCCCCcceeecC
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--GTPNKAQILAER----LPFPMDCLYADP 165 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~--~~~~~~~~~~~~----~~fp~~~vl~D~ 165 (231)
..|--.+||+|..--..|. +.|+...-|.. +..+..+.+.+. ..+|. |+.|.
T Consensus 4 ~iyt~~~CPyC~~ak~~L~-------~~g~~~~~i~~~~~~~~~~~~~~~~~~g~~tvP~--I~i~~ 61 (80)
T COG0695 4 TIYTKPGCPYCKRAKRLLD-------RKGVDYEEIDVDDDEPEEAREMVKRGKGQRTVPQ--IFIGG 61 (80)
T ss_pred EEEECCCCchHHHHHHHHH-------HcCCCcEEEEecCCcHHHHHHHHHHhCCCCCcCE--EEECC
Confidence 3444678999987554444 55666555444 444356566552 56773 55553
No 177
>PRK10329 glutaredoxin-like protein; Provisional
Probab=88.78 E-value=2.3 Score=29.77 Aligned_cols=52 Identities=17% Similarity=0.309 Sum_probs=32.5
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH-HHHHHHh--cCCCCCcceeecC
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN-KAQILAE--RLPFPMDCLYADP 165 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~-~~~~~~~--~~~fp~~~vl~D~ 165 (231)
+..|-..|||+|...-..| ++.|+.+-.|..+... ....+.. ....| ++...
T Consensus 3 v~lYt~~~Cp~C~~ak~~L-------~~~gI~~~~idi~~~~~~~~~~~~~g~~~vP---vv~i~ 57 (81)
T PRK10329 3 ITIYTRNDCVQCHATKRAM-------ESRGFDFEMINVDRVPEAAETLRAQGFRQLP---VVIAG 57 (81)
T ss_pred EEEEeCCCCHhHHHHHHHH-------HHCCCceEEEECCCCHHHHHHHHHcCCCCcC---EEEEC
Confidence 3456689999998754444 4568888888877443 3333433 24567 55543
No 178
>PRK01655 spxA transcriptional regulator Spx; Reviewed
Probab=88.53 E-value=0.72 Score=35.49 Aligned_cols=66 Identities=15% Similarity=0.211 Sum_probs=44.8
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC--C--CHHHHHHHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~--~--~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
+.+|...+|+.|++...-|. +.|+.+..|.. + +.+.+.+|.+..+.+.+ -+....+..|+.+++..
T Consensus 2 i~iY~~~~C~~C~ka~~~L~-------~~gi~~~~idi~~~~~~~~eL~~~l~~~~~g~~-~lin~~~~~~k~l~~~~ 71 (131)
T PRK01655 2 VTLFTSPSCTSCRKAKAWLE-------EHDIPFTERNIFSSPLTIDEIKQILRMTEDGTD-EIISTRSKVFQKLNVDV 71 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCcEEeeccCChhhHHHHHHHHHHhcCCHH-HHHhcCcHHHHhCCCCc
Confidence 45677899999998665544 45666655553 2 34567888886633322 46678899999998864
No 179
>TIGR02189 GlrX-like_plant Glutaredoxin-like family. This family of glutaredoxin-like proteins is aparrently limited to plants. Multiple isoforms are found in A. thaliana and O.sativa.
Probab=88.20 E-value=1.3 Score=32.26 Aligned_cols=32 Identities=22% Similarity=0.322 Sum_probs=19.3
Q ss_pred EEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC
Q 026909 103 VVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (231)
Q Consensus 103 vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~ 142 (231)
|++|- .+|||+|...-.-|. +.|+..-.|..+
T Consensus 10 Vvvys-k~~Cp~C~~ak~~L~-------~~~i~~~~vdid 41 (99)
T TIGR02189 10 VVIFS-RSSCCMCHVVKRLLL-------TLGVNPAVHEID 41 (99)
T ss_pred EEEEE-CCCCHHHHHHHHHHH-------HcCCCCEEEEcC
Confidence 44444 699999986544333 345655555555
No 180
>TIGR02181 GRX_bact Glutaredoxin, GrxC family. This family of glutaredoxins includes the E. coli protein GrxC (Grx3) which appears to have a secondary role in reducing ribonucleotide reductase (in the absence of GrxA) possibly indicating a role in the reduction of other protein disulfides.
Probab=88.03 E-value=1.9 Score=29.38 Aligned_cols=51 Identities=20% Similarity=0.429 Sum_probs=31.0
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC-CHHHHHHHHh---cCCCCCcceeec
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG-TPNKAQILAE---RLPFPMDCLYAD 164 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~-~~~~~~~~~~---~~~fp~~~vl~D 164 (231)
..|...+||+|..--.-|.+ .|+..--+..+ +++..+++.+ ...+|. |+.|
T Consensus 2 ~ly~~~~Cp~C~~a~~~L~~-------~~i~~~~~di~~~~~~~~~~~~~~g~~~vP~--i~i~ 56 (79)
T TIGR02181 2 TIYTKPYCPYCTRAKALLSS-------KGVTFTEIRVDGDPALRDEMMQRSGRRTVPQ--IFIG 56 (79)
T ss_pred EEEecCCChhHHHHHHHHHH-------cCCCcEEEEecCCHHHHHHHHHHhCCCCcCE--EEEC
Confidence 45678999999986666654 35555555544 3444555554 356773 5555
No 181
>COG4232 Thiol:disulfide interchange protein [Posttranslational modification, protein turnover, chaperones / Energy production and conversion]
Probab=87.54 E-value=0.64 Score=44.24 Aligned_cols=79 Identities=14% Similarity=0.211 Sum_probs=48.1
Q ss_pred eccccccCCCCcEEEEEecCCCCcchHHHH-HHHHHHHHHhhhcCcEEEEEe--CCCHHHHHHHHh--cCCCCCcceeec
Q 026909 90 LFKDLWDQNEGVAVVALLRHFGCPCCWELA-SALKESKARFDSAGVKLIAVG--VGTPNKAQILAE--RLPFPMDCLYAD 164 (231)
Q Consensus 90 ~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l-~~L~~~~~~l~~~gv~lv~Is--~~~~~~~~~~~~--~~~fp~~~vl~D 164 (231)
.+.+...+.+++.|++.|-+.||-.|++.- --+++-..+++..|+.++=+. -+|++..+..++ ..+-|. +++.|
T Consensus 464 ~L~~~la~~~~~pVmlDfyAdWCvtCK~~e~~tfsd~~v~~~~~~~vlLqaDvT~~~p~~~~lLk~~~~~G~P~-~~ff~ 542 (569)
T COG4232 464 ELDQALAEAKAKPVMLDFYADWCVTCKENEKYTFSDPQVQQALQDVVLLQADVTANDPAITALLKRLGVFGVPT-YLFFG 542 (569)
T ss_pred HHHHHHHhCCCCcEEEeeehhHHHHhHhhhhhccCcHHHHHhcCCeEEEEeeecCCCHHHHHHHHHcCCCCCCE-EEEEC
Confidence 344445443334788888899999999744 344566666777777766544 456554444444 244552 37778
Q ss_pred CcchH
Q 026909 165 PDRKV 169 (231)
Q Consensus 165 ~~~~~ 169 (231)
++++=
T Consensus 543 ~~g~e 547 (569)
T COG4232 543 PQGSE 547 (569)
T ss_pred CCCCc
Confidence 66653
No 182
>TIGR02183 GRXA Glutaredoxin, GrxA family. This model includes the E. coli glyutaredoxin GrxA which appears to have primary responsibility for the reduction of ribonucleotide reductase.
Probab=87.36 E-value=1.8 Score=30.42 Aligned_cols=37 Identities=16% Similarity=0.336 Sum_probs=24.0
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~ 142 (231)
++.|-..|||+|..--.-|.++..+. .++...-|..+
T Consensus 2 V~vys~~~Cp~C~~ak~~L~~~~~~~--~~i~~~~idi~ 38 (86)
T TIGR02183 2 VVIFGRPGCPYCVRAKQLAEKLAIER--ADFEFRYIDIH 38 (86)
T ss_pred EEEEeCCCCccHHHHHHHHHHhCccc--CCCcEEEEECC
Confidence 45566889999998777776654332 24555555554
No 183
>PRK10824 glutaredoxin-4; Provisional
Probab=86.95 E-value=2.5 Score=31.87 Aligned_cols=56 Identities=16% Similarity=0.246 Sum_probs=30.4
Q ss_pred cEEEEEecC----CCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHH-h---cCCCCCcceeecC
Q 026909 101 VAVVALLRH----FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILA-E---RLPFPMDCLYADP 165 (231)
Q Consensus 101 ~~vL~f~r~----~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~-~---~~~fp~~~vl~D~ 165 (231)
..|++|--+ ++||+|+.-..-|.+. |+..-.|..++...++... + .-.+|. |+.+.
T Consensus 15 ~~Vvvf~Kg~~~~p~Cpyc~~ak~lL~~~-------~i~~~~idi~~d~~~~~~l~~~sg~~TVPQ--IFI~G 78 (115)
T PRK10824 15 NPILLYMKGSPKLPSCGFSAQAVQALSAC-------GERFAYVDILQNPDIRAELPKYANWPTFPQ--LWVDG 78 (115)
T ss_pred CCEEEEECCCCCCCCCchHHHHHHHHHHc-------CCCceEEEecCCHHHHHHHHHHhCCCCCCe--EEECC
Confidence 445666655 5999999866665543 4443334443222333333 3 245664 77763
No 184
>PHA03050 glutaredoxin; Provisional
Probab=86.87 E-value=2.8 Score=31.14 Aligned_cols=19 Identities=26% Similarity=0.732 Sum_probs=13.2
Q ss_pred EecCCCCcchHHHHHHHHH
Q 026909 106 LLRHFGCPCCWELASALKE 124 (231)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~ 124 (231)
.|..+|||+|..-..-|.+
T Consensus 17 vys~~~CPyC~~ak~~L~~ 35 (108)
T PHA03050 17 IFVKFTCPFCRNALDILNK 35 (108)
T ss_pred EEECCCChHHHHHHHHHHH
Confidence 3448999999875555544
No 185
>PRK10638 glutaredoxin 3; Provisional
Probab=86.04 E-value=3 Score=28.93 Aligned_cols=47 Identities=21% Similarity=0.457 Sum_probs=29.1
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH-HHHHHHHh---cCCCC
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP-NKAQILAE---RLPFP 157 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~-~~~~~~~~---~~~fp 157 (231)
+.+|-..+||+|+.-...|.+ .|+....+..+.. +..+++.+ ...+|
T Consensus 4 v~ly~~~~Cp~C~~a~~~L~~-------~gi~y~~~dv~~~~~~~~~l~~~~g~~~vP 54 (83)
T PRK10638 4 VEIYTKATCPFCHRAKALLNS-------KGVSFQEIPIDGDAAKREEMIKRSGRTTVP 54 (83)
T ss_pred EEEEECCCChhHHHHHHHHHH-------cCCCcEEEECCCCHHHHHHHHHHhCCCCcC
Confidence 345668999999986666554 4666666666543 34455555 24567
No 186
>KOG1731 consensus FAD-dependent sulfhydryl oxidase/quiescin and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=85.66 E-value=0.41 Score=45.37 Aligned_cols=51 Identities=18% Similarity=0.284 Sum_probs=39.2
Q ss_pred EEEEEecCCCCcchHHHHHHHHHHHHHhhh--cCcEEEEEeCCCHHHHHHHHh
Q 026909 102 AVVALLRHFGCPCCWELASALKESKARFDS--AGVKLIAVGVGTPNKAQILAE 152 (231)
Q Consensus 102 ~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~--~gv~lv~Is~~~~~~~~~~~~ 152 (231)
.-|+-|-++||+.|+.+.|.++++...+++ .-|.|.+|.+-+.+.+.-=++
T Consensus 59 ~~lVEFy~swCGhCr~FAPtfk~~A~dl~~W~~vv~vaaVdCA~~~N~~lCRe 111 (606)
T KOG1731|consen 59 AKLVEFYNSWCGHCRAFAPTFKKFAKDLEKWRPVVRVAAVDCADEENVKLCRE 111 (606)
T ss_pred hHHHHHHHhhhhhhhhcchHHHHHHHHHhcccceeEEEEeeccchhhhhhHhh
Confidence 445556699999999999999999988774 236688899888776555555
No 187
>cd02979 PHOX_C FAD-dependent Phenol hydoxylase (PHOX) family, C-terminal TRX-fold domain; composed of proteins similar to PHOX from the aerobic topsoil yeast Trichosporon cutaneum. PHOX is a flavoprotein monooxygenase that catalyzes the hydroxylation of phenol and simple phenol derivatives in the ortho position with the consumption of NADPH and oxygen. This is the first step in the biodegradation and detoxification of phenolic compounds. PHOX contains three domains. The substrate and FAD/NAD(P) binding sites are contained in the first two domains, which adopt a complicated folding pattern. The third or C-terminal domain contains a TRX fold and is involved in dimerization. The functional unit of PHOX is a dimer, although active tetramers of the recombinant enzyme can be isolated when overproduced in bacteria.
Probab=85.17 E-value=5.5 Score=31.88 Aligned_cols=104 Identities=13% Similarity=0.174 Sum_probs=58.2
Q ss_pred CCCcCCeEEEC-CCCCeEeccccccCCCCc-EEEEEecCCCCcchHHHHHHHHHHHHHhh-------------hcCcEEE
Q 026909 73 GDLLGDFSIFT-AAGEPVLFKDLWDQNEGV-AVVALLRHFGCPCCWELASALKESKARFD-------------SAGVKLI 137 (231)
Q Consensus 73 G~~ap~f~l~d-~~G~~v~l~dl~~~~~g~-~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~-------------~~gv~lv 137 (231)
|..+|++.+.. .+++++.|.+.... .|+ -+++|-...-++..+..+..+.+..+... +.-+.++
T Consensus 1 G~R~~~a~V~r~aD~~p~~L~~~~~a-dGrfrI~vFagd~~~~~~~~~l~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~ 79 (167)
T cd02979 1 GRRFPSAPVVRQADALPVHLGHRLPA-DGRFRIYVFAGDIAPAQQKSRLTQLCDALDSPDSFPLRYTPRGADPDSVFDVV 79 (167)
T ss_pred CCcCCCceEEEecCCCCHhHhhhccC-CCCEEEEEEcCCCCchhHHHHHHHHHHHHcCCcchHhhcCCCCCCCCCcEEEE
Confidence 56788998887 58999999886654 244 55555443344444444444444331111 1126677
Q ss_pred EEeCCCHHHH--HHHHh-------cCCCCCcceeecCc------chHHHHhCCcc
Q 026909 138 AVGVGTPNKA--QILAE-------RLPFPMDCLYADPD------RKVYNLLGLYH 177 (231)
Q Consensus 138 ~Is~~~~~~~--~~~~~-------~~~fp~~~vl~D~~------~~~~~~~g~~~ 177 (231)
.|........ ..+-+ ........+|+|.+ +..|+.||+..
T Consensus 80 ~I~~~~~~~~e~~dlP~~~~p~~~~~~~~~~~v~~d~~~~~~~~~~~~~~~gv~~ 134 (167)
T cd02979 80 TIHAAPRREIELLDLPAVLRPFGEKKGWDYEKIYADDDSYHEGHGDAYEKYGIDP 134 (167)
T ss_pred EEecCCccccchhhCcHhhcCCCCccccceeeEEecCccccCCcccHHHhhCCCC
Confidence 7776543221 11111 12222223788865 67999999963
No 188
>cd03032 ArsC_Spx Arsenate Reductase (ArsC) family, Spx subfamily; Spx is a unique RNA polymerase (RNAP)-binding protein present in bacilli and some mollicutes. It inhibits transcription by binding to the C-terminal domain of the alpha subunit of RNAP, disrupting complex formation between RNAP and certain transcriptional activator proteins like ResD and ComA. In response to oxidative stress, Spx can also activate transcription, making it a general regulator that exerts both positive and negative control over transcription initiation. Spx has been shown to exert redox-sensitive transcriptional control over genes like trxA (TRX) and trxB (TRX reductase), genes that function in thiol homeostasis. This redox-sensitive activity is dependent on the presence of a CXXC motif, present in some members of the Spx subfamily, that acts as a thiol/disulfide switch. Spx has also been shown to repress genes in a sulfate-dependent manner independent of the presence of the CXXC motif.
Probab=84.61 E-value=2.3 Score=31.71 Aligned_cols=66 Identities=11% Similarity=0.120 Sum_probs=45.7
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC----CHHHHHHHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~----~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
+.+|...+|+.|++....|. +.|+.+..|... +.+.+++|.+..+-+.+ -+....+..|+.+++..
T Consensus 2 i~iY~~~~C~~c~ka~~~L~-------~~gi~~~~idi~~~~~~~~el~~~~~~~~~~~~-~l~n~~~~~~k~l~~~~ 71 (115)
T cd03032 2 IKLYTSPSCSSCRKAKQWLE-------EHQIPFEERNLFKQPLTKEELKEILSLTENGVE-DIISTRSKAFKNLNIDI 71 (115)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCCCceEEEecCCCcchHHHHHHHHHHhcCCHH-HHHhcCcHHHHHcCCCc
Confidence 45677899999998665555 456666666542 35678888886633322 56688999999998864
No 189
>cd02977 ArsC_family Arsenate Reductase (ArsC) family; composed of TRX-fold arsenic reductases and similar proteins including the transcriptional regulator, Spx. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX), through a single catalytic cysteine. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases. Spx is a general regulator that exerts negative and positive control over transcription initiation by binding to the C-terminal domain of the alpha subunit of RNA polymerase.
Probab=84.24 E-value=2.1 Score=31.26 Aligned_cols=64 Identities=17% Similarity=0.229 Sum_probs=43.1
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC----CHHHHHHHHhcCCCCCcceeecCcchHHHHhCCc
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~----~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
.+|...+|+.|++-..-|.+ .|+.+..|... +.+.+.++.+..+.+.+ -+....+..|+.++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~~l~~~~~~~~~~~~-~li~~~~~~~~~l~~~ 69 (105)
T cd02977 2 TIYGNPNCSTSRKALAWLEE-------HGIEYEFIDYLKEPPTKEELKELLAKLGLGVE-DLFNTRGTPYRKLGLA 69 (105)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCCcEEEeeccCCCCHHHHHHHHHhcCCCHH-HHHhcCCchHHHcCCc
Confidence 46778999999986655543 46555555442 35667777776664322 4556788889999886
No 190
>TIGR01617 arsC_related transcriptional regulator, Spx/MgsR family. This model represents a portion of the proteins within the larger set covered by Pfam model pfam03960. That larger family includes a glutaredoxin-dependent arsenate reductase (TIGR00014). Characterized members of this family include Spx and MgsR from Bacillus subtili. Spx is a global regulator for response to thiol-specific oxidative stress. It interacts with RNA polymerase. MgsR (modulator of the general stress response, also called YqgZ) provides a second level of regulation for more than a third of the proteins in the B. subtilis general stress regulon controlled by Sigma-B.
Probab=84.12 E-value=2.4 Score=31.73 Aligned_cols=64 Identities=16% Similarity=0.228 Sum_probs=43.7
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC----CHHHHHHHHhcCCCCCcceeecCcchHHHHhCCc
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~----~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
.+|...+|+.|+.-..-|.+ .|+.+..|... +.+.+.+|.+..+...+ -+....+..|+.+++.
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~l~~~~~~~~~-~lin~~~~~~k~l~~~ 69 (117)
T TIGR01617 2 KVYGSPNCTTCKKARRWLEA-------NGIEYQFIDIGEDGPTREELLDILSLLEDGID-PLLNTRGQSYRALNTS 69 (117)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCceEEEecCCChhhHHHHHHHHHHcCCCHH-HheeCCCcchhhCCch
Confidence 35668999999987666654 56666666653 23456677776663221 4667889999999974
No 191
>cd03007 PDI_a_ERp29_N PDIa family, endoplasmic reticulum protein 29 (ERp29) subfamily; ERp29 is a ubiquitous ER-resident protein expressed in high levels in secretory cells. It forms homodimers and higher oligomers in vitro and in vivo. It contains a redox inactive TRX-like domain at the N-terminus, which is homologous to the redox active TRX (a) domains of PDI, and a C-terminal helical domain similar to the C-terminal domain of P5. The expression profile of ERp29 suggests a role in secretory protein production distinct from that of PDI. It has also been identified as a member of the thyroglobulin folding complex. The Drosophila homolog, Wind, is the product of windbeutel, an essential gene in the development of dorsal-ventral patterning. Wind is required for correct targeting of Pipe, a Golgi-resident type II transmembrane protein with homology to 2-O-sulfotransferase.
Probab=83.89 E-value=1.9 Score=32.55 Aligned_cols=50 Identities=14% Similarity=0.067 Sum_probs=25.9
Q ss_pred eccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhc--CcEEEEEeCCC
Q 026909 90 LFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSA--GVKLIAVGVGT 143 (231)
Q Consensus 90 ~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~--gv~lv~Is~~~ 143 (231)
+|.+...+. +.+|+-|-++| |.|-+ .+.+.++.+++..+ .|.|.-|.+++
T Consensus 10 nF~~~v~~~--~~vlV~F~A~~-Pwc~k-~~~~~~LA~e~~~aa~~v~lakVd~~d 61 (116)
T cd03007 10 TFYKVIPKF--KYSLVKFDTAY-PYGEK-HEAFTRLAESSASATDDLLVAEVGIKD 61 (116)
T ss_pred hHHHHHhcC--CcEEEEEeCCC-CCCCC-hHHHHHHHHHHHhhcCceEEEEEeccc
Confidence 344444432 55666666944 44433 35556665555432 25455577754
No 192
>cd03019 DsbA_DsbA DsbA family, DsbA subfamily; DsbA is a monomeric thiol disulfide oxidoreductase protein containing a redox active CXXC motif imbedded in a TRX fold. It is involved in the oxidative protein folding pathway in prokaryotes, and is the strongest thiol oxidant known, due to the unusual stability of the thiolate anion form of the first cysteine in the CXXC motif. The highly unstable oxidized form of DsbA directly donates disulfide bonds to reduced proteins secreted into the bacterial periplasm. This rapid and unidirectional process helps to catalyze the folding of newly-synthesized polypeptides. To regain catalytic activity, reduced DsbA is then reoxidized by the membrane protein DsbB, which generates its disulfides from oxidized quinones, which in turn are reoxidized by the electron transport chain.
Probab=83.24 E-value=2.2 Score=33.59 Aligned_cols=37 Identities=22% Similarity=0.476 Sum_probs=27.9
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEE
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIA 138 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~ 138 (231)
++.|+.|.-+.||+|...-+.+.++..++ ..++.+.-
T Consensus 16 ~~~i~~f~D~~Cp~C~~~~~~~~~~~~~~-~~~v~~~~ 52 (178)
T cd03019 16 KPEVIEFFSYGCPHCYNFEPILEAWVKKL-PKDVKFEK 52 (178)
T ss_pred CcEEEEEECCCCcchhhhhHHHHHHHHhC-CCCceEEE
Confidence 56666666899999999999998888776 33555543
No 193
>COG2179 Predicted hydrolase of the HAD superfamily [General function prediction only]
Probab=83.15 E-value=3.4 Score=33.37 Aligned_cols=40 Identities=25% Similarity=0.394 Sum_probs=33.8
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 118 LASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 118 ~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
-.|++.++.++++++|+.++.+|-++...+..|.+.+++|
T Consensus 47 ~tpe~~~W~~e~k~~gi~v~vvSNn~e~RV~~~~~~l~v~ 86 (175)
T COG2179 47 ATPELRAWLAELKEAGIKVVVVSNNKESRVARAAEKLGVP 86 (175)
T ss_pred CCHHHHHHHHHHHhcCCEEEEEeCCCHHHHHhhhhhcCCc
Confidence 4578899999999999999999998888888787765555
No 194
>cd03036 ArsC_like Arsenate Reductase (ArsC) family, unknown subfamily; uncharacterized proteins containing a CXXC motif with similarity to thioredoxin (TRX)-fold arsenic reductases, ArsC. Proteins containing a redox active CXXC motif like TRX and glutaredoxin (GRX) function as protein disulfide oxidoreductases, altering the redox state of target proteins via the reversible oxidation of the active site dithiol. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via GRX, through a single catalytic cysteine.
Probab=83.04 E-value=2.3 Score=31.62 Aligned_cols=65 Identities=22% Similarity=0.374 Sum_probs=44.0
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC----CHHHHHHHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~----~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
..|...+|+.|++...-|.+ .|+.+..|... +.+.+++|.+..+.|.+ -+....+..|+.+++..
T Consensus 2 ~iY~~~~C~~c~ka~~~L~~-------~~i~~~~idi~~~~~~~~el~~~~~~~~~~~~-~l~~~~~~~~~~l~~~~ 70 (111)
T cd03036 2 KFYEYPKCSTCRKAKKWLDE-------HGVDYTAIDIVEEPPSKEELKKWLEKSGLPLK-KFFNTSGKSYRELGLKD 70 (111)
T ss_pred EEEECCCCHHHHHHHHHHHH-------cCCceEEecccCCcccHHHHHHHHHHcCCCHH-HHHhcCCchHHhCCccc
Confidence 35668999999987665554 46665555442 34667888887766543 33456777899998863
No 195
>PRK11657 dsbG disulfide isomerase/thiol-disulfide oxidase; Provisional
Probab=81.88 E-value=9.4 Score=32.64 Aligned_cols=28 Identities=14% Similarity=0.299 Sum_probs=21.2
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHH
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKA 127 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~ 127 (231)
++.+|+.|--..||+|++...++.++.+
T Consensus 117 ak~~I~vFtDp~CpyC~kl~~~l~~~~~ 144 (251)
T PRK11657 117 APRIVYVFADPNCPYCKQFWQQARPWVD 144 (251)
T ss_pred CCeEEEEEECCCChhHHHHHHHHHHHhh
Confidence 3556666669999999998888877643
No 196
>PRK10877 protein disulfide isomerase II DsbC; Provisional
Probab=81.76 E-value=2.9 Score=35.36 Aligned_cols=36 Identities=17% Similarity=0.450 Sum_probs=26.2
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEE
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAV 139 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~I 139 (231)
++..|+.|--..||+|++..+++.++. +.||++..+
T Consensus 107 ~k~~I~vFtDp~CpyCkkl~~~l~~~~----~~~v~v~~~ 142 (232)
T PRK10877 107 EKHVITVFTDITCGYCHKLHEQMKDYN----ALGITVRYL 142 (232)
T ss_pred CCEEEEEEECCCChHHHHHHHHHHHHh----cCCeEEEEE
Confidence 466666677999999999888877653 356776554
No 197
>cd03020 DsbA_DsbC_DsbG DsbA family, DsbC and DsbG subfamily; V-shaped homodimeric proteins containing a redox active CXXC motif imbedded in a TRX fold. They function as protein disulfide isomerases and chaperones in the bacterial periplasm to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins. DsbC and DsbG are kept in their reduced state by the cytoplasmic membrane protein DsbD, which utilizes the TRX/TRX reductase system in the cytosol as a source of reducing equivalents. DsbG differ from DsbC in that it has a more limited substrate specificity, and it may preferentially act later in the folding process to catalyze disulfide rearrangements in folded or partially folded proteins. Also included in the alignment is the predicted protein TrbB, whose gene was sequenced from the enterohemorrhagic E. coli type IV pilus gene cluster, which is required for efficient plasmid transfer.
Probab=81.18 E-value=2.8 Score=34.14 Aligned_cols=24 Identities=33% Similarity=0.599 Sum_probs=19.3
Q ss_pred cEEEEEecCCCCcchHHHHHHHHH
Q 026909 101 VAVVALLRHFGCPCCWELASALKE 124 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~ 124 (231)
+..|+.|--..||+|+...+.+.+
T Consensus 78 ~~~i~~f~D~~Cp~C~~~~~~l~~ 101 (197)
T cd03020 78 KRVVYVFTDPDCPYCRKLEKELKP 101 (197)
T ss_pred CEEEEEEECCCCccHHHHHHHHhh
Confidence 555666668999999999888876
No 198
>PRK13344 spxA transcriptional regulator Spx; Reviewed
Probab=80.67 E-value=4.9 Score=30.95 Aligned_cols=66 Identities=8% Similarity=0.142 Sum_probs=44.9
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC----CHHHHHHHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~----~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
+..|-..+|+.|++-..- |++.|+.+..|... +.+.+..|.+..+...+ -+....+..|+.++...
T Consensus 2 i~iY~~~~C~~crkA~~~-------L~~~~i~~~~~d~~~~~~s~~eL~~~l~~~~~~~~-~lin~~~~~~k~L~~~~ 71 (132)
T PRK13344 2 IKIYTISSCTSCKKAKTW-------LNAHQLSYKEQNLGKEPLTKEEILAILTKTENGIE-SIVSSKNRYAKALDCDI 71 (132)
T ss_pred EEEEeCCCCHHHHHHHHH-------HHHcCCCeEEEECCCCCCCHHHHHHHHHHhCCCHH-HhhccCcHHHHhCCcch
Confidence 446678999999985544 44556666666542 45678899887654433 34567888999988754
No 199
>PRK12559 transcriptional regulator Spx; Provisional
Probab=80.55 E-value=5.3 Score=30.71 Aligned_cols=66 Identities=12% Similarity=0.164 Sum_probs=45.7
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC--C--CHHHHHHHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~--~--~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
+.+|-..+|+.|++...-|. +.|+....|.. + +.+.++.|.+..+++.. -+....+..|+.+++..
T Consensus 2 i~iY~~~~C~~crkA~~~L~-------~~gi~~~~~di~~~~~s~~el~~~l~~~~~g~~-~lin~~~~~~k~l~~~~ 71 (131)
T PRK12559 2 VVLYTTASCASCRKAKAWLE-------ENQIDYTEKNIVSNSMTVDELKSILRLTEEGAT-EIISTRSKTFQDLNINI 71 (131)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCeEEEEeeCCcCCHHHHHHHHHHcCCCHH-HHHhcCcHHHHhCCCCc
Confidence 45677899999998665544 44666555543 2 56778899887655522 45677888999998863
No 200
>cd03035 ArsC_Yffb Arsenate Reductase (ArsC) family, Yffb subfamily; Yffb is an uncharacterized bacterial protein encoded by the yffb gene, related to the thioredoxin-fold arsenic reductases, ArsC. The structure of Yffb and the conservation of the catalytic cysteine suggest that it is likely to function as a glutathione (GSH)-dependent thiol reductase. ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from GSH via glutaredoxin, through a single catalytic cysteine.
Probab=80.04 E-value=3.4 Score=30.45 Aligned_cols=62 Identities=10% Similarity=0.056 Sum_probs=44.2
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC--C--CHHHHHHHHhcCCCCCcceeecCcchHHHHhCCc
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~--~--~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
.+|..++|+.|++...-|.+ .|+.+-.|.. + +.+.+++|.+..+.- -+....+..|+.+++.
T Consensus 2 ~iy~~~~C~~crka~~~L~~-------~~i~~~~~di~~~p~s~~eL~~~l~~~g~~---~li~~~~~~yk~l~l~ 67 (105)
T cd03035 2 TLYGIKNCDTVKKARKWLEA-------RGVAYTFHDYRKDGLDAATLERWLAKVGWE---TLLNKRGTTWRKLDDA 67 (105)
T ss_pred EEEeCCCCHHHHHHHHHHHH-------cCCCeEEEecccCCCCHHHHHHHHHHhChH---HHHccCchHHHhCChh
Confidence 46778999999986665554 4555555543 2 567788888877743 4567788899999886
No 201
>TIGR03759 conj_TIGR03759 integrating conjugative element protein, PFL_4693 family. Members of this protein family, such as model protein PFL_4693 from Pseudomonas fluorescens Pf-5, belong to extended genomic regions that appear to be spread by conjugative transfer. Most members have a predicted N-terminal signal sequence. The function is unknown.
Probab=79.90 E-value=14 Score=30.65 Aligned_cols=69 Identities=22% Similarity=0.290 Sum_probs=47.7
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEe-CCCHHHHHHHHhcCCCCCc-----ceeecCcchHHHHhC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVG-VGTPNKAQILAERLPFPMD-----CLYADPDRKVYNLLG 174 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is-~~~~~~~~~~~~~~~fp~~-----~vl~D~~~~~~~~~g 174 (231)
..+.+|+. ..|+.|...+..+.. ....+.|..|+ .++...++.|+.+-+.|.. .|-...+.--|..||
T Consensus 110 ~rlalFvk-d~C~~C~~~~~~l~a-----~~~~~Diylvgs~~dD~~Ir~WA~~~~Idp~~V~~~~ITLNHD~G~w~~lg 183 (200)
T TIGR03759 110 GRLALFVK-DDCVACDARVQRLLA-----DNAPLDLYLVGSQGDDERIRQWANRHQIDPAKVRSRQITLNHDNGRWLQLG 183 (200)
T ss_pred CeEEEEeC-CCChHHHHHHHHHhc-----CCCceeEEEecCCCCHHHHHHHHHHcCCCHHHeecCeeEEecCcchHHHcc
Confidence 56777776 899999998888854 34568888887 4578889999997666621 133334444455666
Q ss_pred C
Q 026909 175 L 175 (231)
Q Consensus 175 ~ 175 (231)
+
T Consensus 184 ~ 184 (200)
T TIGR03759 184 L 184 (200)
T ss_pred C
Confidence 5
No 202
>PF13192 Thioredoxin_3: Thioredoxin domain; PDB: 1ZYP_B 1ZYN_A 1HYU_A 1ILO_A 1J08_F 2YWM_B 2AYT_B 2HLS_B 1A8L_A 2K8S_B ....
Probab=79.46 E-value=8.4 Score=26.26 Aligned_cols=36 Identities=28% Similarity=0.561 Sum_probs=24.5
Q ss_pred CCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHH
Q 026909 109 HFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKA 147 (231)
Q Consensus 109 ~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~ 147 (231)
+.+||.|......+.+...++ |+.+-.+...+...+
T Consensus 7 ~~~C~~C~~~~~~~~~~~~~~---~i~~ei~~~~~~~~~ 42 (76)
T PF13192_consen 7 SPGCPYCPELVQLLKEAAEEL---GIEVEIIDIEDFEEI 42 (76)
T ss_dssp CSSCTTHHHHHHHHHHHHHHT---TEEEEEEETTTHHHH
T ss_pred CCCCCCcHHHHHHHHHHHHhc---CCeEEEEEccCHHHH
Confidence 677999998888887777665 455555554444433
No 203
>PF03190 Thioredox_DsbH: Protein of unknown function, DUF255; InterPro: IPR004879 This is a group of uncharacterised proteins.; PDB: 3IRA_A.
Probab=79.05 E-value=1.5 Score=35.18 Aligned_cols=68 Identities=13% Similarity=0.277 Sum_probs=32.8
Q ss_pred CcEEEEEecCCCCcchHHHHH-HHHH--HHHHhhhcCcEEEEEeCCC-HHHHHHHHh-------cCCCCCcceeecCcch
Q 026909 100 GVAVVALLRHFGCPCCWELAS-ALKE--SKARFDSAGVKLIAVGVGT-PNKAQILAE-------RLPFPMDCLYADPDRK 168 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~-~L~~--~~~~l~~~gv~lv~Is~~~-~~~~~~~~~-------~~~fp~~~vl~D~~~~ 168 (231)
.+.|++.+...||..|+.+.. .+.+ ..+.+ +.++--|-|..+. ++.-..|.. .-+||.. ++.+|+++
T Consensus 37 ~KpIfl~ig~~~C~wChvM~~esf~d~eVa~~l-N~~FI~VkvDree~Pdid~~y~~~~~~~~~~gGwPl~-vfltPdg~ 114 (163)
T PF03190_consen 37 NKPIFLSIGYSWCHWCHVMERESFSDPEVAEYL-NRNFIPVKVDREERPDIDKIYMNAVQAMSGSGGWPLT-VFLTPDGK 114 (163)
T ss_dssp T--EEEEEE-TT-HHHHHHHHHTTT-HHHHHHH-HHH-EEEEEETTT-HHHHHHHHHHHHHHHS---SSEE-EEE-TTS-
T ss_pred CCcEEEEEEecCCcchhhhcccCcCCHHHHHHH-hCCEEEEEeccccCccHHHHHHHHHHHhcCCCCCCce-EEECCCCC
Confidence 478888888999999997653 2322 22222 2233344455554 443344432 3678854 88899887
Q ss_pred H
Q 026909 169 V 169 (231)
Q Consensus 169 ~ 169 (231)
.
T Consensus 115 p 115 (163)
T PF03190_consen 115 P 115 (163)
T ss_dssp E
T ss_pred e
Confidence 5
No 204
>PF05768 DUF836: Glutaredoxin-like domain (DUF836); InterPro: IPR008554 Glutaredoxins [, , ], also known as thioltransferases (disulphide reductases, are small proteins of approximately one hundred amino-acid residues which utilise glutathione and NADPH as cofactors. Oxidized glutathione is regenerated by glutathione reductase. Together these components compose the glutathione system []. Glutaredoxin functions as an electron carrier in the glutathione-dependent synthesis of deoxyribonucleotides by the enzyme ribonucleotide reductase. Like thioredoxin, which functions in a similar way, glutaredoxin possesses an active centre disulphide bond []. It exists in either a reduced or an oxidized form where the two cysteine residues are linked in an intramolecular disulphide bond. Glutaredoxin has been sequenced in a variety of species. On the basis of extensive sequence similarity, it has been proposed [] that Vaccinia virus protein O2L is most probably a glutaredoxin. Finally, it must be noted that Bacteriophage T4 thioredoxin seems also to be evolutionary related. In position 5 of the pattern T4 thioredoxin has Val instead of Pro. This family contains several viral glutaredoxins, and many related bacterial and eukaryotic proteins of unknown function. The best characterised member of this family is G4L (P68460 from SWISSPROT) from Vaccinia virus (strain Western Reserve/WR) (VACV), which is necessary for virion morphogenesis and virus replication []. This is a cytomplasmic protein which functions as a shuttle in a redox pathway between membrane-associated E10R and L1R or F9L []. ; PDB: 1TTZ_A 1XPV_A 2FGX_A 2G2Q_C 1WJK_A.
Probab=75.24 E-value=6.1 Score=27.39 Aligned_cols=56 Identities=23% Similarity=0.328 Sum_probs=35.7
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeecC
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADP 165 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~ 165 (231)
|++|...+|+.|..-...|.+.. .+.++.+..|.+++... |.+++++-.+.+..|.
T Consensus 2 l~l~~k~~C~LC~~a~~~L~~~~---~~~~~~l~~vDI~~d~~---l~~~Y~~~IPVl~~~~ 57 (81)
T PF05768_consen 2 LTLYTKPGCHLCDEAKEILEEVA---AEFPFELEEVDIDEDPE---LFEKYGYRIPVLHIDG 57 (81)
T ss_dssp EEEEE-SSSHHHHHHHHHHHHCC---TTSTCEEEEEETTTTHH---HHHHSCTSTSEEEETT
T ss_pred EEEEcCCCCChHHHHHHHHHHHH---hhcCceEEEEECCCCHH---HHHHhcCCCCEEEEcC
Confidence 67888999999998777776643 24458888888875443 5555554433344443
No 205
>KOG0912 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=73.74 E-value=9.4 Score=33.87 Aligned_cols=32 Identities=19% Similarity=0.180 Sum_probs=27.3
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhc
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSA 132 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~ 132 (231)
.+|++.|-+.||++.+.-.|-+.+.++.++++
T Consensus 14 elvfv~FyAdWCrFSq~L~piF~EAa~~~~~e 45 (375)
T KOG0912|consen 14 ELVFVNFYADWCRFSQMLKPIFEEAAAKFKQE 45 (375)
T ss_pred eEEeeeeehhhchHHHHHhHHHHHHHHHHHHh
Confidence 57888888999999999999999888777654
No 206
>cd02972 DsbA_family DsbA family; consists of DsbA and DsbA-like proteins, including DsbC, DsbG, glutathione (GSH) S-transferase kappa (GSTK), 2-hydroxychromene-2-carboxylate (HCCA) isomerase, an oxidoreductase (FrnE) presumed to be involved in frenolicin biosynthesis, a 27-kDa outer membrane protein, and similar proteins. Members of this family contain a redox active CXXC motif (except GSTK and HCCA isomerase) imbedded in a TRX fold, and an alpha helical insert of about 75 residues (shorter in DsbC and DsbG) relative to TRX. DsbA is involved in the oxidative protein folding pathway in prokaryotes, catalyzing disulfide bond formation of proteins secreted into the bacterial periplasm. DsbC and DsbG function as protein disulfide isomerases and chaperones to correct non-native disulfide bonds formed by DsbA and prevent aggregation of incorrectly folded proteins.
Probab=73.60 E-value=5 Score=27.45 Aligned_cols=35 Identities=20% Similarity=0.373 Sum_probs=24.6
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEe
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVG 140 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is 140 (231)
.+|....||.|....+.+.+.... ...+++++-+.
T Consensus 2 ~~f~d~~Cp~C~~~~~~l~~~~~~-~~~~~~~~~~~ 36 (98)
T cd02972 2 VEFFDPLCPYCYLFEPELEKLLYA-DDGGVRVVYRP 36 (98)
T ss_pred eEEECCCCHhHHhhhHHHHHHHhh-cCCcEEEEEec
Confidence 455588999999999999887632 34456655543
No 207
>PRK08294 phenol 2-monooxygenase; Provisional
Probab=71.13 E-value=15 Score=35.85 Aligned_cols=111 Identities=14% Similarity=0.153 Sum_probs=61.5
Q ss_pred CCCCCCCCCcCCeEEEC-CCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHH--------HhhhcC----
Q 026909 67 EFPANVGDLLGDFSIFT-AAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKA--------RFDSAG---- 133 (231)
Q Consensus 67 ~~~~~vG~~ap~f~l~d-~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~--------~l~~~g---- 133 (231)
...+.+|..+|++.+.. .+++++.|.+......+..+|+|-...-.+.....+..+.+... .+...+
T Consensus 460 ~~~~~~G~r~~~~~v~~~~d~~~~~l~~~~~~~g~~~l~~f~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~~~~~~~~~~ 539 (634)
T PRK08294 460 ATGFPIGKRFHSAPVIRLADAKPVHLGHAATADGRWRIYAFADAADPAGPGSALDALCEFLAESPDSPLRRFTPSGADID 539 (634)
T ss_pred ccCCCCceeCCCCceeeccCCCchhHhhhcccCCCEEEEEEcCCCCcchhHHHHHHHHHHHhhCccchHhhcCCCCCCCC
Confidence 35588999999999987 57888888765532112555555543344455555555444431 111111
Q ss_pred --cEEEEEeCCCHH--HHH-------HHHhcCCC-CCcceeecC--cchHHHHhCCcc
Q 026909 134 --VKLIAVGVGTPN--KAQ-------ILAERLPF-PMDCLYADP--DRKVYNLLGLYH 177 (231)
Q Consensus 134 --v~lv~Is~~~~~--~~~-------~~~~~~~f-p~~~vl~D~--~~~~~~~~g~~~ 177 (231)
+.++.|...... .+. .+...+++ .+..+++|. .++.|+.||+.+
T Consensus 540 ~~~~~~~i~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~~ 597 (634)
T PRK08294 540 AVIDVRAIFQQPHRELDLEDVPALLLPRKGRFGLTDYEKVFCADLSGADIFDLRGIDR 597 (634)
T ss_pred cEEEEEEEecCCCCccchhhCcHhhCCcccccCccchhheecCCCchhhHHHhhCCCC
Confidence 566677655321 122 22222332 222377763 356899999964
No 208
>KOG1752 consensus Glutaredoxin and related proteins [Posttranslational modification, protein turnover, chaperones]
Probab=70.41 E-value=11 Score=27.96 Aligned_cols=54 Identities=22% Similarity=0.353 Sum_probs=29.1
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC---HHHHHHHHh----cCCCCCcceeec
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT---PNKAQILAE----RLPFPMDCLYAD 164 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~---~~~~~~~~~----~~~fp~~~vl~D 164 (231)
..|++|- .+|||+|.. +++|-.. .++....|-.|. ...+..+.. .-++|. |+.+
T Consensus 14 ~~VVifS-Ks~C~~c~~-~k~ll~~------~~v~~~vvELD~~~~g~eiq~~l~~~tg~~tvP~--vFI~ 74 (104)
T KOG1752|consen 14 NPVVIFS-KSSCPYCHR-AKELLSD------LGVNPKVVELDEDEDGSEIQKALKKLTGQRTVPN--VFIG 74 (104)
T ss_pred CCEEEEE-CCcCchHHH-HHHHHHh------CCCCCEEEEccCCCCcHHHHHHHHHhcCCCCCCE--EEEC
Confidence 4566666 499999998 5544332 445444444332 223444433 235664 5555
No 209
>PTZ00062 glutaredoxin; Provisional
Probab=68.72 E-value=20 Score=29.84 Aligned_cols=55 Identities=16% Similarity=0.218 Sum_probs=30.3
Q ss_pred cEEEEEecC----CCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHH-h---cCCCCCcceeec
Q 026909 101 VAVVALLRH----FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILA-E---RLPFPMDCLYAD 164 (231)
Q Consensus 101 ~~vL~f~r~----~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~-~---~~~fp~~~vl~D 164 (231)
..|++|.-+ ++||+|+....-|. +.|+....+..++...+++.. + ...+|. |+.+
T Consensus 113 ~~Vvvf~Kg~~~~p~C~~C~~~k~~L~-------~~~i~y~~~DI~~d~~~~~~l~~~sg~~TvPq--VfI~ 175 (204)
T PTZ00062 113 HKILLFMKGSKTFPFCRFSNAVVNMLN-------SSGVKYETYNIFEDPDLREELKVYSNWPTYPQ--LYVN 175 (204)
T ss_pred CCEEEEEccCCCCCCChhHHHHHHHHH-------HcCCCEEEEEcCCCHHHHHHHHHHhCCCCCCe--EEEC
Confidence 445555554 68999987555554 345665555555333333333 3 345664 6666
No 210
>COG1651 DsbG Protein-disulfide isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=65.75 E-value=18 Score=30.25 Aligned_cols=47 Identities=21% Similarity=0.369 Sum_probs=33.9
Q ss_pred ECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhc
Q 026909 82 FTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSA 132 (231)
Q Consensus 82 ~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~ 132 (231)
...+++.+.+++..+ ++.++.|.-.-||+|.+.++.+.+.+-...+.
T Consensus 70 ~~~~~~~~~~G~~~~----~v~v~~f~d~~Cp~C~~~~~~l~~~~i~~~~~ 116 (244)
T COG1651 70 LTPDGKDVVLGNPYA----PVTVVEFFDYTCPYCKEAFPELKKKYIDDGKV 116 (244)
T ss_pred ecCCCCcccccCCCC----CceEEEEecCcCccHHHHHHHHHHHhhhcCCC
Confidence 345666666666644 56677777999999999999999866554444
No 211
>TIGR00014 arsC arsenate reductase (glutaredoxin). composed of two polypeptides, the products of the arsA and arsB genes. The pump alone produces resistance to arsenite and antimonite. This protein, ArsC, catalyzes the reduction of arsenate to arsenite, and thus extends resistance to include arsenate.
Probab=64.41 E-value=19 Score=26.77 Aligned_cols=65 Identities=15% Similarity=0.265 Sum_probs=46.1
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC--C--CHHHHHHHHhcCCCCC-cceeecCcchHHHHhCCcc
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPM-DCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~--~--~~~~~~~~~~~~~fp~-~~vl~D~~~~~~~~~g~~~ 177 (231)
.+|-...|..|++...-|.+ .|+.+..+.. + +.+.++.|.+..+.+. . =+....+..|+.+++..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~di~~~p~t~~el~~~l~~~g~~~~~-~lin~~~~~~~~l~~~~ 71 (114)
T TIGR00014 2 TIYHNPRCSKSRNTLALLED-------KGIEPEVVKYLKNPPTKSELEAIFAKLGLTVAR-EMIRTKEALYKELGLSD 71 (114)
T ss_pred EEEECCCCHHHHHHHHHHHH-------CCCCeEEEeccCCCcCHHHHHHHHHHcCCchHH-HHHhcCCcHHHHcCCCc
Confidence 46678899999986665554 4666555553 2 4577888988887761 1 16678899999998864
No 212
>TIGR00995 3a0901s06TIC22 chloroplast protein import component, Tic22 family. Two families of proteins are involved in the chloroplast envelope import appartus.They are the three proteins of the outer membrane (TOC) and four proteins in the inner membrane (TIC). This family is specific for the Tic22 protein.
Probab=63.03 E-value=16 Score=31.69 Aligned_cols=93 Identities=19% Similarity=0.206 Sum_probs=55.8
Q ss_pred CCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHH
Q 026909 71 NVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL 150 (231)
Q Consensus 71 ~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~ 150 (231)
+.-+..|-|++.|.+|+++-...-.+. +++-+|+-.. -.....+.+++...+++ ..+++|+.|+.+...+++
T Consensus 77 ekL~~VPVFtItn~~G~pvl~s~~~~~---~~~gvf~s~q--edA~afL~~lk~~~p~l-~~~~kV~pvsL~~vYkl~-- 148 (270)
T TIGR00995 77 KILAGTSVFTVSNAQNEFVLASDNDGE---KSIGLLCFRQ--EDAEAFLAQLRKRKPEV-GSQAKVVPITLDQVYKLK-- 148 (270)
T ss_pred HHhcCCceEEEEcCCCCeEEEECCCCC---ceEEEEECCH--HHHHHHHHHHHhhCccc-cCCceEEEEEHHHHHHHh--
Confidence 444678999999999999988765433 4444433110 11333455555544554 357999999988876553
Q ss_pred HhcCCCCCcceeecCcchHHHHhCC
Q 026909 151 AERLPFPMDCLYADPDRKVYNLLGL 175 (231)
Q Consensus 151 ~~~~~fp~~~vl~D~~~~~~~~~g~ 175 (231)
.+++.|- ++-|+ .++-.++++
T Consensus 149 ~e~l~F~---fiP~~-~qV~~A~~l 169 (270)
T TIGR00995 149 VEGIGFR---FLPDP-AQIKNALEL 169 (270)
T ss_pred hcCccEE---EeCCH-HHHHHHHHH
Confidence 2346666 66664 334344443
No 213
>COG3019 Predicted metal-binding protein [General function prediction only]
Probab=62.09 E-value=25 Score=27.53 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=33.0
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
..-+++|..+.|+-|.+++..|. .+|++|=.+..++-..+ +++++.|
T Consensus 25 ~~~~~vyksPnCGCC~~w~~~mk-------~~Gf~Vk~~~~~d~~al---K~~~gIp 71 (149)
T COG3019 25 ATEMVVYKSPNCGCCDEWAQHMK-------ANGFEVKVVETDDFLAL---KRRLGIP 71 (149)
T ss_pred eeeEEEEeCCCCccHHHHHHHHH-------hCCcEEEEeecCcHHHH---HHhcCCC
Confidence 34567777999999999887665 56888887777765433 3345555
No 214
>COG2910 Putative NADH-flavin reductase [General function prediction only]
Probab=59.80 E-value=62 Score=26.86 Aligned_cols=111 Identities=20% Similarity=0.234 Sum_probs=66.2
Q ss_pred cccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcE-EEEEeC-CCHHHH--HHHHhcCCCCCcceeecCcc
Q 026909 92 KDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVK-LIAVGV-GTPNKA--QILAERLPFPMDCLYADPDR 167 (231)
Q Consensus 92 ~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~-lv~Is~-~~~~~~--~~~~~~~~fp~~~vl~D~~~ 167 (231)
+++.+. -+|+.-|...|...-..+......+.+.++..|+. ++.|+- ++.+.. ......-.||.+ |.+.-.
T Consensus 58 ~~l~g~---DaVIsA~~~~~~~~~~~~~k~~~~li~~l~~agv~RllVVGGAGSL~id~g~rLvD~p~fP~e--y~~~A~ 132 (211)
T COG2910 58 SDLAGH---DAVISAFGAGASDNDELHSKSIEALIEALKGAGVPRLLVVGGAGSLEIDEGTRLVDTPDFPAE--YKPEAL 132 (211)
T ss_pred hhhcCC---ceEEEeccCCCCChhHHHHHHHHHHHHHHhhcCCeeEEEEcCccceEEcCCceeecCCCCchh--HHHHHH
Confidence 455554 68888886666655667778888888888887876 555652 332111 222223456642 444333
Q ss_pred hH---HHHhCCcccccceeeccChhhHhhHHHHHHHHHhhcccccCCCCCCCCcccccccEEEE
Q 026909 168 KV---YNLLGLYHGVGRTFFNPASAKVFSRFEALRKAVQNYTIEATPDDRRRDVCLQREATIIC 228 (231)
Q Consensus 168 ~~---~~~~g~~~g~~~~~~~p~~~~v~~~~~~l~~~~k~~~~~~~~~~~~Gd~~~q~gG~~v~ 228 (231)
.- -+.+--..++.|++++|.- .+.|+.++|. ++.||.-+.
T Consensus 133 ~~ae~L~~Lr~~~~l~WTfvSPaa-------------------~f~PGerTg~--yrlggD~ll 175 (211)
T COG2910 133 AQAEFLDSLRAEKSLDWTFVSPAA-------------------FFEPGERTGN--YRLGGDQLL 175 (211)
T ss_pred HHHHHHHHHhhccCcceEEeCcHH-------------------hcCCccccCc--eEeccceEE
Confidence 33 3334334567788888831 1236788886 888887654
No 215
>PF05176 ATP-synt_10: ATP10 protein; InterPro: IPR007849 This entry represents the ATPase assembly factor ATP10 found in mitochondria, which is essential for the assembly of the mitochondrial F1-F0 complex. A yeast nuclear gene (ATP10) encodes a product that is essential for the assembly of a functional mitochondrial ATPase complex. Mutations in ATP10 induce a loss of rutamycin sensitivity in the mitochondrial ATPase, but do not affect the respiratory enzymes. ATP10 has an Mr of 30,293 and its primary structure is not related to any known subunit of the yeast or mammalian mitochondrial ATPase complexes. ATP10 is associated with the mitochondrial membrane. It is suggested that the ATP10 product is not a subunit of the ATPase complex but rather a protein required for the assembly of the F0 sector of the complex [].; GO: 0033615 mitochondrial proton-transporting ATP synthase complex assembly, 0005743 mitochondrial inner membrane
Probab=58.95 E-value=45 Score=28.63 Aligned_cols=109 Identities=14% Similarity=0.089 Sum_probs=58.6
Q ss_pred CCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHH----
Q 026909 71 NVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNK---- 146 (231)
Q Consensus 71 ~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~---- 146 (231)
...-.+|++...+++|+.+++.+....+ --+|.+|+...+=..+..+...+.+.+..-....+++|-|+..+--.
T Consensus 96 ~kAlyFP~l~g~tL~g~~~~~~~~l~gk-vSlV~l~s~~~ge~~~~sw~~p~~~~~~~~~~~~~q~v~In~~e~~~k~~l 174 (252)
T PF05176_consen 96 DKALYFPNLQGKTLAGNKVDTTDLLRGK-VSLVCLFSSAWGEEMVDSWTSPFLEDFLQEPYGRVQIVEINLIENWLKSWL 174 (252)
T ss_pred HhCCcCCCCccccCCCCCcccccccCCc-eEEEEEeehHHHHHHHHHHhhHHHHHHhhCCCCceEEEEEecchHHHHHHH
Confidence 3445789999999999999998887542 13444555443333334444322222211111279999999765322
Q ss_pred HHHHHh--cCCCC----CcceeecC---cchHHHHhCCccccc
Q 026909 147 AQILAE--RLPFP----MDCLYADP---DRKVYNLLGLYHGVG 180 (231)
Q Consensus 147 ~~~~~~--~~~fp----~~~vl~D~---~~~~~~~~g~~~g~~ 180 (231)
.+-+.. +-..| ..|++++. ...+-+++|+.....
T Consensus 175 ~~~~~~~lrk~ip~~~h~~Yf~~~~~~~~~~iRe~Lgi~N~~~ 217 (252)
T PF05176_consen 175 VKLFMGSLRKSIPEERHDRYFIVYRGQLSDDIREALGINNSYV 217 (252)
T ss_pred HHHHhhhhhccCCHHHCceEEEEeCCcccHHHHHHhCCCCCCc
Confidence 111111 11222 11345553 456778899965443
No 216
>cd03041 GST_N_2GST_N GST_N family, 2 repeats of the N-terminal domain of soluble GSTs (2 GST_N) subfamily; composed of uncharacterized proteins. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins, and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains.
Probab=57.67 E-value=54 Score=21.98 Aligned_cols=52 Identities=27% Similarity=0.425 Sum_probs=28.8
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHh---cCCCCCcceeecC
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADP 165 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~---~~~fp~~~vl~D~ 165 (231)
..|...+||+|++-.-.|.+. ...++++-|..+. ....+|.+ .-..| ++.|.
T Consensus 3 ~Ly~~~~sp~~~kv~~~L~~~-----gi~y~~~~v~~~~-~~~~~~~~~~p~~~vP---~l~~~ 57 (77)
T cd03041 3 ELYEFEGSPFCRLVREVLTEL-----ELDVILYPCPKGS-PKRDKFLEKGGKVQVP---YLVDP 57 (77)
T ss_pred eEecCCCCchHHHHHHHHHHc-----CCcEEEEECCCCh-HHHHHHHHhCCCCccc---EEEeC
Confidence 456678999999765555543 1123444443322 22345655 24578 77775
No 217
>PRK10853 putative reductase; Provisional
Probab=56.07 E-value=19 Score=27.14 Aligned_cols=64 Identities=13% Similarity=0.098 Sum_probs=47.3
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC--C--CHHHHHHHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~--~--~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
+.+|....|.-|++.+.-|.+ .|+.+..+.. + +.+.++.|.+..++. -+....+..|+.++...
T Consensus 2 i~iy~~~~C~t~rkA~~~L~~-------~~i~~~~~d~~k~p~s~~eL~~~l~~~g~~---~l~n~~~~~~r~L~~~~ 69 (118)
T PRK10853 2 VTLYGIKNCDTIKKARRWLEA-------QGIDYRFHDYRVDGLDSELLQGFIDELGWE---ALLNTRGTTWRKLDETQ 69 (118)
T ss_pred EEEEcCCCCHHHHHHHHHHHH-------cCCCcEEeehccCCcCHHHHHHHHHHcCHH---HHHhcCCchHHhCCHhH
Confidence 457778999999987666554 4666666653 2 567789998887776 56788889999988753
No 218
>TIGR03143 AhpF_homolog putative alkyl hydroperoxide reductase F subunit. This family of thioredoxin reductase homologs is found adjacent to alkylhydroperoxide reductase C subunit predominantly in cases where there is only one C subunit in the genome and that genome is lacking the F subunit partner (also a thioredcxin reductase homolog) that is usually found (TIGR03140).
Probab=55.63 E-value=39 Score=32.26 Aligned_cols=43 Identities=12% Similarity=0.116 Sum_probs=31.2
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
+++-|-.|-..+||+|..-...+.++..+.. ++..-.|...+.
T Consensus 476 ~~~~i~v~~~~~C~~Cp~~~~~~~~~~~~~~--~i~~~~i~~~~~ 518 (555)
T TIGR03143 476 KPVNIKIGVSLSCTLCPDVVLAAQRIASLNP--NVEAEMIDVSHF 518 (555)
T ss_pred CCeEEEEEECCCCCCcHHHHHHHHHHHHhCC--CceEEEEECccc
Confidence 3666666669999999988888877776543 677777765554
No 219
>PRK12759 bifunctional gluaredoxin/ribonucleoside-diphosphate reductase subunit beta; Provisional
Probab=55.29 E-value=21 Score=32.82 Aligned_cols=39 Identities=15% Similarity=0.274 Sum_probs=24.2
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHH
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQI 149 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~ 149 (231)
|+.|-.+|||+|..--.-| ++.|+....|..++.....+
T Consensus 4 V~vys~~~Cp~C~~aK~~L-------~~~gi~~~~idi~~~~~~~~ 42 (410)
T PRK12759 4 VRIYTKTNCPFCDLAKSWF-------GANDIPFTQISLDDDVKRAE 42 (410)
T ss_pred EEEEeCCCCHHHHHHHHHH-------HHCCCCeEEEECCCChhHHH
Confidence 3445589999998754444 44577766776664443333
No 220
>PRK10200 putative racemase; Provisional
Probab=54.09 E-value=29 Score=29.20 Aligned_cols=43 Identities=21% Similarity=0.308 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEeCCCHHHH-HHHHhcCCCCCcceee
Q 026909 118 LASALKESKARFDSAGVKLIAVGVGTPNKA-QILAERLPFPMDCLYA 163 (231)
Q Consensus 118 ~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~-~~~~~~~~fp~~~vl~ 163 (231)
-.+.|.+..+.|++.|+++++|.+++.... ....+.++.| ++.
T Consensus 60 ~~~~l~~~~~~L~~~g~~~iviaCNTah~~~~~l~~~~~iP---ii~ 103 (230)
T PRK10200 60 TGDILAEAALGLQRAGAEGIVLCTNTMHKVADAIESRCSLP---FLH 103 (230)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCchHHHHHHHHHHhCCCC---Eee
Confidence 567888888999999999999999987654 3444568888 665
No 221
>cd03060 GST_N_Omega_like GST_N family, Omega-like subfamily; composed of uncharacterized proteins with similarity to class Omega GSTs. GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. Like Omega enzymes, proteins in this subfamily contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a r
Probab=54.05 E-value=28 Score=22.92 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=28.8
Q ss_pred EecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHh---cCCCCCcceeecCc
Q 026909 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADPD 166 (231)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~---~~~fp~~~vl~D~~ 166 (231)
+|...+||+|+.-.-.|.+. ...++++-|...+. ..+|.+ .-..| ++.|.+
T Consensus 3 ly~~~~~p~~~rv~~~L~~~-----gl~~e~~~v~~~~~--~~~~~~~np~~~vP---~L~~~~ 56 (71)
T cd03060 3 LYSFRRCPYAMRARMALLLA-----GITVELREVELKNK--PAEMLAASPKGTVP---VLVLGN 56 (71)
T ss_pred EEecCCCcHHHHHHHHHHHc-----CCCcEEEEeCCCCC--CHHHHHHCCCCCCC---EEEECC
Confidence 45578999998765555432 22345566654322 234544 24568 777653
No 222
>KOG4277 consensus Uncharacterized conserved protein, contains thioredoxin domain [General function prediction only]
Probab=53.55 E-value=5.2 Score=35.37 Aligned_cols=34 Identities=15% Similarity=0.162 Sum_probs=25.5
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCc
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGV 134 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv 134 (231)
...++-|.++||..|++.-|-..+.--++++.|.
T Consensus 44 diW~VdFYAPWC~HCKkLePiWdeVG~elkdig~ 77 (468)
T KOG4277|consen 44 DIWFVDFYAPWCAHCKKLEPIWDEVGHELKDIGL 77 (468)
T ss_pred CeEEEEeechhhhhcccccchhHHhCcchhhcCC
Confidence 4555566699999999988887777666766664
No 223
>PF06053 DUF929: Domain of unknown function (DUF929); InterPro: IPR009272 This is a family of proteins from the archaeon Sulfolobus, with undetermined function.
Probab=52.98 E-value=23 Score=30.39 Aligned_cols=32 Identities=31% Similarity=0.496 Sum_probs=24.8
Q ss_pred CCcEEEEEecCCCCcchHHHHHHHHHHHHHhh
Q 026909 99 EGVAVVALLRHFGCPCCWELASALKESKARFD 130 (231)
Q Consensus 99 ~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~ 130 (231)
.|++.++|...-|||+|-.+.=.|-....+|.
T Consensus 57 ~Gk~~v~~igw~gCP~~A~~sW~L~~ALsrfG 88 (249)
T PF06053_consen 57 NGKPEVIFIGWEGCPYCAAESWALYIALSRFG 88 (249)
T ss_pred CCeeEEEEEecccCccchhhHHHHHHHHHhcC
Confidence 47999999999999999887666655555554
No 224
>PRK00311 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase; Reviewed
Probab=52.90 E-value=97 Score=26.82 Aligned_cols=82 Identities=27% Similarity=0.426 Sum_probs=52.6
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCccee-----ecCcch---HHHHhCCcccccceeeccCh
Q 026909 117 ELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLY-----ADPDRK---VYNLLGLYHGVGRTFFNPAS 188 (231)
Q Consensus 117 ~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl-----~D~~~~---~~~~~g~~~g~~~~~~~p~~ 188 (231)
..+.++.+....+.+.|+..|.+-.=+.+.+++..+.++.| ++ .+-++. .+..+|+..+. .|+.
T Consensus 158 ~~a~~~i~ra~a~~eAGA~~i~lE~v~~~~~~~i~~~l~iP---~igiGaG~~~dgqvlv~~D~lG~~~~~-----~pkf 229 (264)
T PRK00311 158 EAAEKLLEDAKALEEAGAFALVLECVPAELAKEITEALSIP---TIGIGAGPDCDGQVLVWHDMLGLFSGF-----KPKF 229 (264)
T ss_pred HHHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhCCCC---EEEeccCCCCCceeeeHHhhcCCCCCC-----CCCc
Confidence 34677888888899999998887655667888999988888 55 233344 37788886542 3443
Q ss_pred hhHhhH-HHHHHHHHhhcc
Q 026909 189 AKVFSR-FEALRKAVQNYT 206 (231)
Q Consensus 189 ~~v~~~-~~~l~~~~k~~~ 206 (231)
.+-+.. ...+.++++.|.
T Consensus 230 ~k~~~~~~~~~~~a~~~y~ 248 (264)
T PRK00311 230 VKRYADLAGSIREAVKAYV 248 (264)
T ss_pred hHhHhhhHHHHHHHHHHHH
Confidence 333322 233445555544
No 225
>COG0821 gcpE 1-hydroxy-2-methyl-2-(e)-butenyl 4-diphosphate synthase [Lipid metabolism]
Probab=52.66 E-value=1.1e+02 Score=27.58 Aligned_cols=77 Identities=29% Similarity=0.383 Sum_probs=49.4
Q ss_pred HHHhhhcCcEEEEEeCCCHHHHHHHHh---cCCCCCcceeecCcchHHHH-hCCc-ccccceeeccChhhHhhHHHHHHH
Q 026909 126 KARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADPDRKVYNL-LGLY-HGVGRTFFNPASAKVFSRFEALRK 200 (231)
Q Consensus 126 ~~~l~~~gv~lv~Is~~~~~~~~~~~~---~~~fp~~~vl~D~~~~~~~~-~g~~-~g~~~~~~~p~~~~v~~~~~~l~~ 200 (231)
..+|.+.|+++|=|++.+.+.+.++.+ +++.| ++.|-.-. |+. +... .|..---.+|.......++..+.+
T Consensus 42 I~~L~~aG~dIVRvtv~~~e~A~A~~~Ik~~~~vP---LVaDiHf~-~rla~~~~~~g~~k~RINPGNig~~~~v~~vVe 117 (361)
T COG0821 42 IKALERAGCDIVRVTVPDMEAAEALKEIKQRLNVP---LVADIHFD-YRLALEAAECGVDKVRINPGNIGFKDRVREVVE 117 (361)
T ss_pred HHHHHHcCCCEEEEecCCHHHHHHHHHHHHhCCCC---EEEEeecc-HHHHHHhhhcCcceEEECCcccCcHHHHHHHHH
Confidence 345678899999999998887777765 79999 99997766 432 2221 122222247765554455666666
Q ss_pred HHhhcc
Q 026909 201 AVQNYT 206 (231)
Q Consensus 201 ~~k~~~ 206 (231)
+.+..+
T Consensus 118 ~Ak~~g 123 (361)
T COG0821 118 AAKDKG 123 (361)
T ss_pred HHHHcC
Confidence 666543
No 226
>TIGR00222 panB 3-methyl-2-oxobutanoate hydroxymethyltransferase. Members of this family are 3-methyl-2-oxobutanoate hydroxymethyltransferase, the first enzyme of the pantothenate biosynthesis pathway. An alternate name is ketopantoate hydroxymethyltransferase.
Probab=51.88 E-value=1.1e+02 Score=26.58 Aligned_cols=83 Identities=28% Similarity=0.350 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCccee-----ecCcch---HHHHhCCcccccceeeccC
Q 026909 116 WELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLY-----ADPDRK---VYNLLGLYHGVGRTFFNPA 187 (231)
Q Consensus 116 ~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl-----~D~~~~---~~~~~g~~~g~~~~~~~p~ 187 (231)
.....++.+....+++.|+..+.+-.=..+.+++..+.++.| ++ .+-++. ++..+|+..+. .|+
T Consensus 156 ~~~a~~~i~~A~a~e~AGA~~ivlE~vp~~~a~~It~~l~iP---~iGIGaG~~~dGQvlV~~D~lG~~~~~-----~pk 227 (263)
T TIGR00222 156 EEAAKKLLEDALALEEAGAQLLVLECVPVELAAKITEALAIP---VIGIGAGNVCDGQILVMHDALGITVGH-----IPK 227 (263)
T ss_pred HHHHHHHHHHHHHHHHcCCCEEEEcCCcHHHHHHHHHhCCCC---EEeeccCCCCCceeeeHHhhcCCCCCC-----CCC
Confidence 345678888888999999988887766678889999988888 54 233343 37788887542 344
Q ss_pred hhhHhhH-HHHHHHHHhhcc
Q 026909 188 SAKVFSR-FEALRKAVQNYT 206 (231)
Q Consensus 188 ~~~v~~~-~~~l~~~~k~~~ 206 (231)
..+-+.. ...+.++++.|.
T Consensus 228 f~k~y~~~~~~~~~a~~~y~ 247 (263)
T TIGR00222 228 FAKNYLAETETIRAAVRQYM 247 (263)
T ss_pred chHHHhhHHHHHHHHHHHHH
Confidence 3332222 233455555554
No 227
>PRK06184 hypothetical protein; Provisional
Probab=51.50 E-value=50 Score=30.86 Aligned_cols=79 Identities=20% Similarity=0.228 Sum_probs=52.0
Q ss_pred CCCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHH
Q 026909 69 PANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (231)
Q Consensus 69 ~~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~ 148 (231)
.+.+|..+|+..+.+.+|+++++-|+.+. .+.++|.|-...+ .. ....++.++.|....
T Consensus 385 ~~~~G~r~p~~~~~~~~~~~~~l~d~~~~-~~~~ll~~~~~~~--------~~-------~~~~~~~~~~~~~~~----- 443 (502)
T PRK06184 385 GLRAGDRAPDAPLLGAAGQPTRLFDLFRG-PHWTLLAFGAGAA--------AI-------LARRGLRIHRVGDAA----- 443 (502)
T ss_pred CCCCcCCCCCchhccCCCceeeHHHhhCC-CcEEEEEecCCch--------hh-------hhhcCceEEEecccC-----
Confidence 46789999999998777888888888753 2356655321111 00 123467777776432
Q ss_pred HHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 149 ILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 149 ~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
... .+.|+++.+.+.|++..
T Consensus 444 ------~~~---~~~d~~g~~~~~~~~~~ 463 (502)
T PRK06184 444 ------EGG---DLVDDAGHFRDAYGLTG 463 (502)
T ss_pred ------CCC---ceeCCCccHHHHhcCCC
Confidence 122 57899999999999965
No 228
>PF09897 DUF2124: Uncharacterized protein conserved in archaea (DUF2124); InterPro: IPR009183 There are currently no experimental data for members of this group of archaeal proteins, nor do they exhibit features indicative of any function.; PDB: 2R47_D.
Probab=50.62 E-value=24 Score=27.75 Aligned_cols=61 Identities=15% Similarity=0.174 Sum_probs=48.1
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeecCc
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPD 166 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~~ 166 (231)
+-+|+.+.+-.-|.+.....+.+++.+++..+. +++|+.-+-++-..|.+.++|. ++.|.+
T Consensus 81 ~D~vVlmGGLAMP~~~v~~e~v~~li~ki~~~~--iiGiCFms~F~kagW~~~I~FD---~iID~~ 141 (147)
T PF09897_consen 81 PDVVVLMGGLAMPKSGVTPEDVNELIKKISPKK--IIGICFMSMFEKAGWDDKIDFD---YIIDAD 141 (147)
T ss_dssp EEEEEEEGGGGSTTTS--HHHHHHHHHHHEEEE--EEEEEETTHHHHTTHHHHS--S---EEEEEE
T ss_pred CCEEEEEcccccCCCCCCHHHHHHHHHHhCcCC--EEEEehHHHHHHcCCccccCcc---EEEeee
Confidence 678888888888888888888888888876554 9999999999999999999999 888854
No 229
>cd00570 GST_N_family Glutathione S-transferase (GST) family, N-terminal domain; a large, diverse group of cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. In addition, GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. This family, also referred to as soluble GSTs, is the largest family of GSH transferases and is only distantly related to the mitochondrial GSTs (GSTK subfamily, a member of the DsbA family). Soluble GSTs bear no structural similarity to microsomal GSTs (MAPEG family) and display additional activities unique to their group, such as catalyzing thiolysis, reduction and isomerization of certain compounds. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical doma
Probab=49.43 E-value=31 Score=21.49 Aligned_cols=53 Identities=21% Similarity=0.251 Sum_probs=28.2
Q ss_pred EecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHh---cCCCCCcceeecCcc
Q 026909 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADPDR 167 (231)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~---~~~fp~~~vl~D~~~ 167 (231)
+|...+||.|+.-...|... +..++++-+..++.... .+.+ ....| ++.+.+.
T Consensus 3 ly~~~~~~~~~~~~~~l~~~-----~i~~~~~~~~~~~~~~~-~~~~~~~~~~~P---~l~~~~~ 58 (71)
T cd00570 3 LYYFPGSPRSLRVRLALEEK-----GLPYELVPVDLGEGEQE-EFLALNPLGKVP---VLEDGGL 58 (71)
T ss_pred EEeCCCCccHHHHHHHHHHc-----CCCcEEEEeCCCCCCCH-HHHhcCCCCCCC---EEEECCE
Confidence 34467799998655544433 22345555654433222 3444 24567 6666533
No 230
>cd03033 ArsC_15kD Arsenate Reductase (ArsC) family, 15kD protein subfamily; composed of proteins of unknown function with similarity to thioredoxin-fold arsenic reductases, ArsC. It is encoded by an ORF present in a gene cluster associated with nitrogen fixation that also encodes dinitrogenase reductase ADP-ribosyltransferase (DRAT) and dinitrogenase reductase activating glycohydrolase (DRAG). ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], using reducing equivalents derived from glutathione via glutaredoxin, through a single catalytic cysteine.
Probab=49.40 E-value=38 Score=25.23 Aligned_cols=64 Identities=14% Similarity=0.166 Sum_probs=43.2
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEe--CC--CHHHHHHHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVG--VG--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is--~~--~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
+.+|....|..|++...-|. +.|+..-.+. .+ +.+.++.|.+..++. -+....+..|+.++...
T Consensus 2 i~iy~~p~C~~crkA~~~L~-------~~gi~~~~~d~~~~p~s~~eL~~~l~~~g~~---~l~n~~~~~~r~~~~~~ 69 (113)
T cd03033 2 IIFYEKPGCANNARQKALLE-------AAGHEVEVRDLLTEPWTAETLRPFFGDLPVA---EWFNPAAPRVKSGEVVP 69 (113)
T ss_pred EEEEECCCCHHHHHHHHHHH-------HcCCCcEEeehhcCCCCHHHHHHHHHHcCHH---HHHhcccHHHHhcCCCc
Confidence 34677889999997665444 4455554444 33 457788998877764 45566788899877653
No 231
>PF13778 DUF4174: Domain of unknown function (DUF4174)
Probab=49.38 E-value=49 Score=24.77 Aligned_cols=49 Identities=12% Similarity=0.162 Sum_probs=38.6
Q ss_pred ccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC
Q 026909 91 FKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV 141 (231)
Q Consensus 91 l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~ 141 (231)
|.++..++ +++|+|-+...-+.-..++..|.+....|.+..+.++.|..
T Consensus 3 L~~~~w~~--R~lvv~aps~~d~~~~~q~~~L~~~~~~l~eRdi~v~~i~~ 51 (118)
T PF13778_consen 3 LDQFRWKN--RLLVVFAPSADDPRYQQQLEELQNNRCGLDERDIVVIVITG 51 (118)
T ss_pred hhHhcCcC--ceEEEECCCCCCHHHHHHHHHHHhhhhccccCceEEEEEeC
Confidence 44555542 78888888888888888999999988889999988888743
No 232
>PRK11869 2-oxoacid ferredoxin oxidoreductase subunit beta; Provisional
Probab=47.67 E-value=23 Score=30.95 Aligned_cols=24 Identities=21% Similarity=0.404 Sum_probs=17.7
Q ss_pred ecCCCCcchH--HHHHHHHHHHHHhh
Q 026909 107 LRHFGCPCCW--ELASALKESKARFD 130 (231)
Q Consensus 107 ~r~~~Cp~C~--~~l~~L~~~~~~l~ 130 (231)
+++.|||.|- ..+..+.+..+++.
T Consensus 6 ~~~~~CpGCg~~~i~~~~~~a~~~l~ 31 (280)
T PRK11869 6 YDIAWCPGCGNFGIRNALMKALSELN 31 (280)
T ss_pred CCCCCCcCCCCHHHHHHHHHHHHHcC
Confidence 5789999994 56777777766653
No 233
>TIGR03765 ICE_PFL_4695 integrating conjugative element protein, PFL_4695 family. This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=47.18 E-value=85 Score=23.30 Aligned_cols=58 Identities=26% Similarity=0.255 Sum_probs=43.8
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhc-CCCCCcceeecCcchHHHHhCCcc
Q 026909 117 ELASALKESKARFDSAGVKLIAVGVGTPNKAQILAER-LPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 117 ~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~-~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
....-|++..+++++.+..=++|++++.+.+.+.++- -+.+ +.-....++.+.+|+..
T Consensus 35 ~S~~WL~~~~~~L~~l~AvGlVVnV~t~~~l~~Lr~lapgl~---l~P~sgddLa~rL~l~h 93 (105)
T TIGR03765 35 ASRQWLQQNAAALKSLGAVGLVVNVETAAALQRLRALAPGLP---LLPVSGDDLAERLGLRH 93 (105)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHcCCCc---ccCCCHHHHHHHhCCCc
Confidence 3445567778888888888888999999888888774 3556 56666778888888854
No 234
>PRK10954 periplasmic protein disulfide isomerase I; Provisional
Probab=46.87 E-value=26 Score=28.73 Aligned_cols=37 Identities=22% Similarity=0.587 Sum_probs=23.5
Q ss_pred cEEEEEecCCCCcchHHHHHHH---HHHHHHhhhcCcEEEEE
Q 026909 101 VAVVALLRHFGCPCCWELASAL---KESKARFDSAGVKLIAV 139 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L---~~~~~~l~~~gv~lv~I 139 (231)
+.|+-|| ...||.|...-+.+ ..+.+.+. .++.++-+
T Consensus 39 ~~VvEff-dy~CphC~~~~~~l~~~~~~~~~~~-~~v~~~~~ 78 (207)
T PRK10954 39 PQVLEFF-SFYCPHCYQFEEVYHVSDNVKKKLP-EGTKMTKY 78 (207)
T ss_pred CeEEEEe-CCCCccHHHhcccccchHHHHHhCC-CCCeEEEe
Confidence 5555555 88999999877655 45555553 45555543
No 235
>cd01427 HAD_like Haloacid dehalogenase-like hydrolases. The haloacid dehalogenase-like (HAD) superfamily includes L-2-haloacid dehalogenase, epoxide hydrolase, phosphoserine phosphatase, phosphomannomutase, phosphoglycolate phosphatase, P-type ATPase, and many others, all of which use a nucleophilic aspartate in their phosphoryl transfer reaction. All members possess a highly conserved alpha/beta core domain, and many also possess a small cap domain, the fold and function of which is variable. Members of this superfamily are sometimes referred to as belonging to the DDDD superfamily of phosphohydrolases.
Probab=44.69 E-value=49 Score=23.64 Aligned_cols=39 Identities=23% Similarity=0.278 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCC
Q 026909 118 LASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPF 156 (231)
Q Consensus 118 ~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~f 156 (231)
..+.+.+...++++.|+.++.++.+....++.+.+..++
T Consensus 25 ~~~~~~~~l~~l~~~g~~i~ivS~~~~~~~~~~~~~~~~ 63 (139)
T cd01427 25 LYPGVKEALKELKEKGIKLALATNKSRREVLELLEELGL 63 (139)
T ss_pred cCcCHHHHHHHHHHCCCeEEEEeCchHHHHHHHHHHcCC
Confidence 446667777778888999999998888888888886554
No 236
>PF10740 DUF2529: Protein of unknown function (DUF2529); InterPro: IPR019676 This entry represents a protein family conserved in the Bacillales. Their function is not known. ; PDB: 3JX9_A.
Probab=44.62 E-value=64 Score=26.12 Aligned_cols=56 Identities=13% Similarity=0.082 Sum_probs=22.5
Q ss_pred CCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEe
Q 026909 73 GDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVG 140 (231)
Q Consensus 73 G~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is 140 (231)
-+++|...-.+.+.+ +++++... -.||+|-|+..-. + ..+...++.+.|+.+|+|+
T Consensus 60 ~E~l~~~k~l~~~~~--~~~~lt~~---DRVllfs~~~~~~----e---~~~~a~~L~~~gi~~v~Vs 115 (172)
T PF10740_consen 60 AEPLPSAKRLSEDLE--NFDELTET---DRVLLFSPFSTDE----E---AVALAKQLIEQGIPFVGVS 115 (172)
T ss_dssp TT--TTEEE--TT----------TT----EEEEEES-S--H----H---HHHHHHHHHHHT--EEEEE
T ss_pred CCCCchhhcCccccc--cccccccc---ceEEEEeCCCCCH----H---HHHHHHHHHHCCCCEEEEE
Confidence 356777765553322 12223222 3456665443321 3 3444555677899999999
No 237
>PHA03075 glutaredoxin-like protein; Provisional
Probab=44.00 E-value=33 Score=25.99 Aligned_cols=29 Identities=28% Similarity=0.502 Sum_probs=22.5
Q ss_pred EEEEEecCCCCcchHHHHHHHHHHHHHhh
Q 026909 102 AVVALLRHFGCPCCWELASALKESKARFD 130 (231)
Q Consensus 102 ~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~ 130 (231)
-+|+.|.-+.|+.|...-..|.++.++++
T Consensus 3 ~tLILfGKP~C~vCe~~s~~l~~ledeY~ 31 (123)
T PHA03075 3 KTLILFGKPLCSVCESISEALKELEDEYD 31 (123)
T ss_pred ceEEEeCCcccHHHHHHHHHHHHhhcccc
Confidence 36777889999999987777777766654
No 238
>TIGR00035 asp_race aspartate racemase.
Probab=43.47 E-value=52 Score=27.41 Aligned_cols=40 Identities=20% Similarity=0.361 Sum_probs=31.2
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEeCCCHHH-HHHHHhcCCCC
Q 026909 118 LASALKESKARFDSAGVKLIAVGVGTPNK-AQILAERLPFP 157 (231)
Q Consensus 118 ~l~~L~~~~~~l~~~gv~lv~Is~~~~~~-~~~~~~~~~fp 157 (231)
-.+.+.+..+.|++.|+++++|.+++... ..+..+.++.|
T Consensus 60 ~~~~l~~~~~~L~~~g~d~iviaCNTah~~~~~l~~~~~iP 100 (229)
T TIGR00035 60 PRPILIDIAVKLENAGADFIIMPCNTAHKFAEDIQKAIGIP 100 (229)
T ss_pred HHHHHHHHHHHHHHcCCCEEEECCccHHHHHHHHHHhCCCC
Confidence 55667777788889999999999998765 44555567778
No 239
>PF04278 Tic22: Tic22-like family; InterPro: IPR007378 Chloroplast function requires the import of nuclear encoded proteins from the cytoplasm across the chloroplast double membrane. This is accompished by two protein complexes, the Toc complex located at the outer membrane and the Tic complex loacted at the inner membrane []. The Toc complex recognises specific proteins by a cleavable N-terminal sequence and is primarily responsible for translocation through the outer membrane, while the Tic complex translocates the protein through the inner membrane. This entry represents Tic22, a core member of the Tic complex. It is believed to act as a link between both protein complexes, contacting the translocated protein in the intermembrane space after transport through the Toc complex, and directing it to the Tic complex [].; PDB: 4EV1_A.
Probab=42.61 E-value=46 Score=28.93 Aligned_cols=66 Identities=21% Similarity=0.248 Sum_probs=32.9
Q ss_pred CCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHH----HHHHHhhhcCcEEEEEeCCCHHHH
Q 026909 73 GDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALK----ESKARFDSAGVKLIAVGVGTPNKA 147 (231)
Q Consensus 73 G~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~----~~~~~l~~~gv~lv~Is~~~~~~~ 147 (231)
-+.+|-|++.|.+|+++-..+--++ ...+.++|+ |+..+.++. ...+++ ..+++|+.|+.+...++
T Consensus 72 L~~VPVF~itn~~G~p~l~~~~~~~-~~~v~~~F~-------s~~dA~~~L~~lk~~~p~~-~~~~kV~pvsL~~vY~l 141 (274)
T PF04278_consen 72 LAGVPVFTITNSQGEPVLVSGPDQG-GKSVGLFFF-------SQQDAEAFLAQLKKSNPEL-ASGAKVVPVSLGKVYQL 141 (274)
T ss_dssp HTTSEEEEEE-TT--B-----TTS---SEEEEEES--------HHHHHHHHHHHHH-SSHH-HTT-EEEEEEHHHHHHH
T ss_pred hcCceEEEEECCCCCEEEeccCCCC-CceEEEEEe-------cHHHHHHHHHHHhhhCccc-cCceEEEEecHHHHHHH
Confidence 3568999999999999877665321 113444444 444444443 332333 56799999998776554
No 240
>PRK10026 arsenate reductase; Provisional
Probab=42.11 E-value=72 Score=24.89 Aligned_cols=65 Identities=12% Similarity=0.221 Sum_probs=44.6
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEe--CC--CHHHHHHHHhcCCCCCcceeecCcchHHHHhCCc
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVG--VG--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is--~~--~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
+.+|....|.-|++.+.-|.+ .|+.+..+. .+ +.+.++.|.+..+.+.. -+.-..+..|+.+++.
T Consensus 4 i~iY~~p~Cst~RKA~~wL~~-------~gi~~~~~d~~~~ppt~~eL~~~l~~~g~~~~-~lint~~~~yr~L~~~ 72 (141)
T PRK10026 4 ITIYHNPACGTSRNTLEMIRN-------SGTEPTIIHYLETPPTRDELVKLIADMGISVR-ALLRKNVEPYEELGLA 72 (141)
T ss_pred EEEEeCCCCHHHHHHHHHHHH-------CCCCcEEEeeeCCCcCHHHHHHHHHhCCCCHH-HHHHcCCchHHHcCCC
Confidence 557778999999987776664 355555554 33 45778999987776422 2335577788888874
No 241
>PF12710 HAD: haloacid dehalogenase-like hydrolase; PDB: 3P96_A 3N28_A 3FVV_A 1RKU_A 1RKV_A 1Y8A_A 2FEA_B 3KD3_B.
Probab=41.96 E-value=35 Score=26.80 Aligned_cols=40 Identities=23% Similarity=0.285 Sum_probs=31.4
Q ss_pred HHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceee
Q 026909 124 ESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYA 163 (231)
Q Consensus 124 ~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~ 163 (231)
+...++++.|++++.||.+....++.+.+.++++...+++
T Consensus 96 e~i~~~~~~~~~v~IvS~~~~~~i~~~~~~~~i~~~~v~~ 135 (192)
T PF12710_consen 96 ELIRELKDNGIKVVIVSGSPDEIIEPIAERLGIDDDNVIG 135 (192)
T ss_dssp HHHHHHHHTTSEEEEEEEEEHHHHHHHHHHTTSSEGGEEE
T ss_pred HHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCCceEEEE
Confidence 6666677889999999999888899999888888433333
No 242
>PRK06183 mhpA 3-(3-hydroxyphenyl)propionate hydroxylase; Validated
Probab=41.51 E-value=1.1e+02 Score=28.91 Aligned_cols=91 Identities=21% Similarity=0.226 Sum_probs=54.4
Q ss_pred CCCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHH
Q 026909 69 PANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (231)
Q Consensus 69 ~~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~ 148 (231)
...+|+.+|+..+.+..|....+.++.+. +.++|.| ... +.. .+. ....+.++..++.+|.+.......
T Consensus 410 ~~~~G~~~p~~~~~~~~~~~~~~d~~~~~--~~~ll~~-~~~--~~~--~~~--~~~~~~~~~~~~~~~~~~~~~~~~-- 478 (538)
T PRK06183 410 HSPVGTLFPQPRVELGGGDRGLLDDVLGP--GFAVLGW-GCD--PLA--GLS--DEQRARWRALGARFVQVVPAVQAH-- 478 (538)
T ss_pred CCCcccCcCCCeeEcCCCCcccchhccCC--ceEEEEe-cCC--chh--cCC--HHHHHHHHHcCCeEEEEecccccc--
Confidence 34689999999998776666667778765 3555544 111 111 111 111123556678888876543210
Q ss_pred HHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 149 ILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 149 ~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
.-+.+ .+.|.++.+.+.|+...
T Consensus 479 ----~~~~~---~~~d~~g~~~~~~~~~~ 500 (538)
T PRK06183 479 ----TAQDD---HDSDVDGALRAWLARHG 500 (538)
T ss_pred ----cCCCc---eeecCCchHHHHHHhCC
Confidence 02334 67899999988888754
No 243
>PF11072 DUF2859: Protein of unknown function (DUF2859); InterPro: IPR021300 This model describes a protein family exemplified by PFL_4695 of Pseudomonas fluorescens Pf-5. Full-length proteins in this family show some architectural variety, but this model represents a conserved domain. Most or all member proteins belong to laterally transferred chromosomal islands called integrative conjugative elements, or ICE.
Probab=41.22 E-value=1.1e+02 Score=24.06 Aligned_cols=58 Identities=22% Similarity=0.228 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhc-CCCCCcceeecCcchHHHHhCCcc
Q 026909 117 ELASALKESKARFDSAGVKLIAVGVGTPNKAQILAER-LPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 117 ~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~-~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
....-|++..++|++.+..=++|++++.+.+.+.++- -+.+ ++-....++.+.+|+..
T Consensus 73 ~S~~WL~~~~~~L~~l~AvGlVVNV~t~~~L~~Lr~lapgl~---l~P~sgddLA~rL~l~H 131 (142)
T PF11072_consen 73 LSRQWLQQNAEELKQLGAVGLVVNVATEAALQRLRQLAPGLP---LLPVSGDDLARRLGLSH 131 (142)
T ss_pred HHHHHHHHHHHHHHHCCCeEEEEecCCHHHHHHHHHHcCCCe---ecCCCHHHHHHHhCCCc
Confidence 3455567777888888888889999999988888874 3555 66666778888888854
No 244
>PF00875 DNA_photolyase: DNA photolyase from Prosite.; InterPro: IPR006050 DNA photolyases are enzymes that bind to DNA containing pyrimidine dimers: on absorption of visible light, they catalyse dimer splitting into the constituent monomers, a process called photoreactivation []. This is a DNA repair mechanism, repairing mismatched pyrimidine dimers induced by exposure to ultra-violet light []. The precise mechanisms involved in substrate binding, conversion of light energy to the mechanical energy needed to rupture the cyclobutane ring, and subsequent release of the product are uncertain []. Analysis of DNA lyases has revealed the presence of an intrinsic chromophore, all monomers containing a reduced FAD moiety, and, in addition, either a reduced pterin or 8-hydroxy-5-diazaflavin as a second chromophore [, ]. Either chromophore may act as the primary photon acceptor, peak absorptions occurring in the blue region of the spectrum and in the UV-B region, at a wavelength around 290nm []. This domain binds a light harvesting cofactor.; GO: 0003913 DNA photolyase activity, 0006281 DNA repair; PDB: 3UMV_A 2J07_A 1IQU_A 2J09_A 2J08_A 1IQR_A 1DNP_A 3FY4_B 2VTB_A 2J4D_B ....
Probab=40.95 E-value=55 Score=25.54 Aligned_cols=49 Identities=14% Similarity=0.219 Sum_probs=36.3
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeecCcch
Q 026909 118 LASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRK 168 (231)
Q Consensus 118 ~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~~~~ 168 (231)
....|.++..++++.|+.++.+..+..+.+.+++++++... |+++.+-.
T Consensus 51 l~~sL~~L~~~L~~~g~~L~v~~g~~~~~l~~l~~~~~~~~--V~~~~~~~ 99 (165)
T PF00875_consen 51 LLESLADLQESLRKLGIPLLVLRGDPEEVLPELAKEYGATA--VYFNEEYT 99 (165)
T ss_dssp HHHHHHHHHHHHHHTTS-EEEEESSHHHHHHHHHHHHTESE--EEEE---S
T ss_pred HHHHHHHHHHHHHhcCcceEEEecchHHHHHHHHHhcCcCe--eEeccccC
Confidence 46788889999999999999999888888888888666443 77765543
No 245
>cd03034 ArsC_ArsC Arsenate Reductase (ArsC) family, ArsC subfamily; arsenic reductases similar to that encoded by arsC on the R733 plasmid of Escherichia coli. E. coli ArsC catalyzes the reduction of arsenate [As(V)] to arsenite [As(III)], the first step in the detoxification of arsenic, using reducing equivalents derived from glutathione (GSH) via glutaredoxin (GRX). ArsC contains a single catalytic cysteine, within a thioredoxin fold, that forms a covalent thiolate-As(V) intermediate, which is reduced by GRX through a mixed GSH-arsenate intermediate. This family of predominantly bacterial enzymes is unrelated to two other families of arsenate reductases which show similarity to low-molecular-weight acid phosphatases and phosphotyrosyl phosphatases.
Probab=40.94 E-value=56 Score=24.04 Aligned_cols=65 Identities=18% Similarity=0.204 Sum_probs=44.8
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC--C--CHHHHHHHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~--~--~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
.+|-...|..|++.+.-|. +.|+.+..+.. + +.+.+..|.+..+...+ -+....+..|+.+++..
T Consensus 2 ~iy~~~~C~t~rkA~~~L~-------~~~i~~~~~di~~~~~t~~el~~~l~~~~~~~~-~lin~~~~~y~~l~~~~ 70 (112)
T cd03034 2 TIYHNPRCSKSRNALALLE-------EAGIEPEIVEYLKTPPTAAELRELLAKLGISPR-DLLRTKEAPYKELGLAD 70 (112)
T ss_pred EEEECCCCHHHHHHHHHHH-------HCCCCeEEEecccCCcCHHHHHHHHHHcCCCHH-HHHhcCCchHHHcCCCc
Confidence 4666889999998665554 44666666653 2 56778899887774333 34566888899998864
No 246
>cd02991 UAS_ETEA UAS family, ETEA subfamily; composed of proteins similar to human ETEA protein, the translation product of a highly expressed gene in the T-cells and eosinophils of atopic dermatitis patients compared with those of normal individuals. ETEA shows homology to Fas-associated factor 1 (FAF1); both containing UAS and UBX (ubiquitin-associated) domains. Compared to FAF1, however, ETEA lacks the ubiquitin-associated UBA domain and a nuclear targeting domain. The function of ETEA is still unknown. A yeast two-hybrid assay showed that it can interact with Fas. Because of its homology to FAF1, it is postulated that ETEA could be involved in modulating Fas-mediated apoptosis of T-cells and eosinophils of atopic dermatitis patients, making them more resistant to apoptosis.
Probab=40.91 E-value=94 Score=23.13 Aligned_cols=62 Identities=13% Similarity=0.089 Sum_probs=36.4
Q ss_pred CCcEEEEEecCC----CCcchHHHH--HHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHh---cCCCCCcceeecCc
Q 026909 99 EGVAVVALLRHF----GCPCCWELA--SALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADPD 166 (231)
Q Consensus 99 ~g~~vL~f~r~~----~Cp~C~~~l--~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~---~~~fp~~~vl~D~~ 166 (231)
+++.+++.+-.. ||.+|+..+ +++.+.. +.++-+++....+.+. .+... -..||.- ++.++.
T Consensus 16 e~K~llVylhs~~~~~~~~fc~~~l~~~~v~~~l----n~~fv~w~~dv~~~eg-~~la~~l~~~~~P~~-~~l~~~ 86 (116)
T cd02991 16 ELRFLLVYLHGDDHQDTDEFCRNTLCAPEVIEYI----NTRMLFWACSVAKPEG-YRVSQALRERTYPFL-AMIMLK 86 (116)
T ss_pred hCCEEEEEEeCCCCccHHHHHHHHcCCHHHHHHH----HcCEEEEEEecCChHH-HHHHHHhCCCCCCEE-EEEEec
Confidence 357888888787 788887654 4555544 2456666666666653 23332 2457743 455544
No 247
>PRK15317 alkyl hydroperoxide reductase subunit F; Provisional
Probab=39.45 E-value=94 Score=29.28 Aligned_cols=39 Identities=10% Similarity=0.085 Sum_probs=28.6
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV 141 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~ 141 (231)
++-+-.|-...||+|..-...+.++..+. .+|..-.|..
T Consensus 117 ~~~i~~fv~~~Cp~Cp~~v~~~~~~a~~~--~~i~~~~id~ 155 (517)
T PRK15317 117 DFHFETYVSLSCHNCPDVVQALNLMAVLN--PNITHTMIDG 155 (517)
T ss_pred CeEEEEEEcCCCCCcHHHHHHHHHHHHhC--CCceEEEEEc
Confidence 66666666999999998888888776543 3677666643
No 248
>TIGR00612 ispG_gcpE 1-hydroxy-2-methyl-2-(E)-butenyl 4-diphosphate synthase. Chlamydial members of the family have a long insert. The family is largely restricted to Bacteria, where it is widely but not universally distributed. No homology can be detected between the GcpE family and other proteins.
Probab=38.15 E-value=1.7e+02 Score=26.37 Aligned_cols=80 Identities=18% Similarity=0.219 Sum_probs=49.1
Q ss_pred HHHHHhhhcCcEEEEEeCCCHHHHHHHHh---cCCCCCcceeecCcchHHHHh-CCcccccceeeccChhhHhhHHHHHH
Q 026909 124 ESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADPDRKVYNLL-GLYHGVGRTFFNPASAKVFSRFEALR 199 (231)
Q Consensus 124 ~~~~~l~~~gv~lv~Is~~~~~~~~~~~~---~~~fp~~~vl~D~~~~~~~~~-g~~~g~~~~~~~p~~~~v~~~~~~l~ 199 (231)
+...+|.+.|+++|=|.+.+.+.++++.+ +.+.| +++|-.-+.-.++ -+..|...--++|........+..+.
T Consensus 38 ~QI~~L~~aGceiVRvavp~~~~A~al~~I~~~~~iP---lVADIHFd~~lAl~a~~~g~dkiRINPGNig~~e~v~~vv 114 (346)
T TIGR00612 38 AQIRALEEAGCDIVRVTVPDRESAAAFEAIKEGTNVP---LVADIHFDYRLAALAMAKGVAKVRINPGNIGFRERVRDVV 114 (346)
T ss_pred HHHHHHHHcCCCEEEEcCCCHHHHHhHHHHHhCCCCC---EEEeeCCCcHHHHHHHHhccCeEEECCCCCCCHHHHHHHH
Confidence 33455678899999999998877666654 68889 9999766532232 12222222225675544445555665
Q ss_pred HHHhhcc
Q 026909 200 KAVQNYT 206 (231)
Q Consensus 200 ~~~k~~~ 206 (231)
+..|..+
T Consensus 115 ~~ak~~~ 121 (346)
T TIGR00612 115 EKARDHG 121 (346)
T ss_pred HHHHHCC
Confidence 5555544
No 249
>PRK13738 conjugal transfer pilus assembly protein TraW; Provisional
Probab=37.66 E-value=85 Score=26.24 Aligned_cols=63 Identities=14% Similarity=0.144 Sum_probs=39.0
Q ss_pred EEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 102 AVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 102 ~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
-.|+||=+ .-..++.-+.+.+... ..+++|.++-+-.+..+ .++=+ +|.|.++.+.+.||++.
T Consensus 121 ~~LvfiDg----dD~~Qv~wak~~~~~~--~~~k~ILv~Gs~~~~~~----~l~~~---vYfdQ~G~Lt~rF~I~~ 183 (209)
T PRK13738 121 QTLYFING----DDPAQVAWMKRQTPPT--LESKIILVQGSIPEMSK----ALDSR---IYFDQNGVLCQRFGIDQ 183 (209)
T ss_pred ceEEEEeC----CCHHHHHHHHHhhhcc--CCceEEEECCCHHHHHH----HhCCc---eEEcCcchHHHhcCCee
Confidence 34555533 2345665555543322 25778888844333343 44556 99999999999999964
No 250
>TIGR00067 glut_race glutamate racemase. The most closely related proteins differing in function are aspartate racemases.
Probab=37.29 E-value=88 Score=26.66 Aligned_cols=58 Identities=17% Similarity=0.187 Sum_probs=39.9
Q ss_pred EEEEecCCCCcch---HH-HHHHHHHHHHHhh-hcCcEEEEEeCCCHHH--HHHHHhcCCCCCcceee
Q 026909 103 VVALLRHFGCPCC---WE-LASALKESKARFD-SAGVKLIAVGVGTPNK--AQILAERLPFPMDCLYA 163 (231)
Q Consensus 103 vL~f~r~~~Cp~C---~~-~l~~L~~~~~~l~-~~gv~lv~Is~~~~~~--~~~~~~~~~fp~~~vl~ 163 (231)
+++|-=..+.|+= .+ ..+.+.+..+.|. +.|+++++|.|++... ..+.++++++| ++.
T Consensus 26 ~iy~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~~g~d~ivIaCNTA~a~~~~~l~~~~~iP---ii~ 90 (251)
T TIGR00067 26 YIYVGDTKRFPYGEKSPEFILEYVLELLTFLKERHNIKLLVVACNTASALALEDLQRNFDFP---VVG 90 (251)
T ss_pred EEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHHCCCC---EEe
Confidence 3444444566663 33 3455557778898 9999999999998762 56666678888 555
No 251
>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase). This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....
Probab=36.28 E-value=71 Score=25.34 Aligned_cols=38 Identities=21% Similarity=0.280 Sum_probs=29.5
Q ss_pred HHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 120 ~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
++..+...++++.|++++.++-|+........+.++.+
T Consensus 130 ~~~~~~l~~L~~~Gi~~~i~TGD~~~~a~~~~~~lgi~ 167 (215)
T PF00702_consen 130 PGAKEALQELKEAGIKVAILTGDNESTASAIAKQLGIF 167 (215)
T ss_dssp TTHHHHHHHHHHTTEEEEEEESSEHHHHHHHHHHTTSC
T ss_pred hhhhhhhhhhhccCcceeeeeccccccccccccccccc
Confidence 44555566678889999999988888888888887775
No 252
>PRK00865 glutamate racemase; Provisional
Probab=36.12 E-value=95 Score=26.52 Aligned_cols=68 Identities=16% Similarity=0.086 Sum_probs=47.9
Q ss_pred cEEEEEecCCCCcchH---HHHHHH-HHHHHHhhhcCcEEEEEeCCCHH--HHHHHHhcCCCCCcceeecCcchHHHH
Q 026909 101 VAVVALLRHFGCPCCW---ELASAL-KESKARFDSAGVKLIAVGVGTPN--KAQILAERLPFPMDCLYADPDRKVYNL 172 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~---~~l~~L-~~~~~~l~~~gv~lv~Is~~~~~--~~~~~~~~~~fp~~~vl~D~~~~~~~~ 172 (231)
.-+++|.=...+|+=. +++..+ .+..+.|.+.|++.++|.+++.. ...+.++.+++| ++. -+-.+..+
T Consensus 31 ~~~iY~~D~~~~PYG~ks~~~i~~~~~~~~~~L~~~g~d~iVIaCNTa~~~~l~~lr~~~~iP---vig-i~~a~~~a 104 (261)
T PRK00865 31 EHIIYVGDTARFPYGEKSEEEIRERTLEIVEFLLEYGVKMLVIACNTASAVALPDLRERYDIP---VVG-IVPAIKPA 104 (261)
T ss_pred CCEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHhCCCCEEEEeCchHHHHHHHHHHHhCCCC---EEe-eHHHHHHH
Confidence 4466666677888853 444444 35567788999999999999875 457777788899 776 55555444
No 253
>KOG3414 consensus Component of the U4/U6.U5 snRNP/mitosis protein DIM1 [RNA processing and modification; Cell cycle control, cell division, chromosome partitioning]
Probab=35.89 E-value=2.1e+02 Score=22.20 Aligned_cols=43 Identities=14% Similarity=0.125 Sum_probs=31.9
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~ 144 (231)
++|++-|.+.|-|.|...=.-|.+..+.+.+- +.+..|..++.
T Consensus 24 rlvViRFGr~~Dp~C~~mD~~L~~i~~~vsnf-a~IylvdideV 66 (142)
T KOG3414|consen 24 RLVVIRFGRDWDPTCMKMDELLSSIAEDVSNF-AVIYLVDIDEV 66 (142)
T ss_pred eEEEEEecCCCCchHhhHHHHHHHHHHHHhhc-eEEEEEecchh
Confidence 89999999999999998888888888777542 23444444543
No 254
>COG1393 ArsC Arsenate reductase and related proteins, glutaredoxin family [Inorganic ion transport and metabolism]
Probab=35.55 E-value=44 Score=25.16 Aligned_cols=65 Identities=12% Similarity=0.226 Sum_probs=45.4
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEE--eCC--CHHHHHHHHhcCCCCCcceeecCcchHHHHhCCc
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAV--GVG--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~I--s~~--~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
+.+|...-|..|++-..-|. +.|+....| ..+ +.+.+.+|.+..+...+ -+....+..|+.+|..
T Consensus 3 itiy~~p~C~t~rka~~~L~-------~~gi~~~~~~y~~~~~s~~eL~~~l~~~g~~~~-~li~t~~~~~r~L~~~ 71 (117)
T COG1393 3 ITIYGNPNCSTCRKALAWLE-------EHGIEYTFIDYLKTPPSREELKKILSKLGDGVE-ELINTRGTTYRELNLD 71 (117)
T ss_pred EEEEeCCCChHHHHHHHHHH-------HcCCCcEEEEeecCCCCHHHHHHHHHHcCccHH-HHHHhccchHHHcCCc
Confidence 56777889999988665555 456554443 333 56779999997775433 5567789999999943
No 255
>PF08821 CGGC: CGGC domain; InterPro: IPR014925 Proteins in this entry are a quite highly conserved sequence of CGGC in its central region. The region has many conserved cysteines and histidines suggestive of a zinc binding function.
Probab=35.53 E-value=1.1e+02 Score=22.71 Aligned_cols=48 Identities=21% Similarity=0.386 Sum_probs=30.8
Q ss_pred CeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC
Q 026909 87 EPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV 141 (231)
Q Consensus 87 ~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~ 141 (231)
+.-.|++|-++. .-++-|+..-+|| -..+.....++.+.|+++|.++.
T Consensus 26 r~g~F~~y~~~~--~elvgf~~CgGCp-----g~~~~~~~~~l~~~~~d~IHlss 73 (107)
T PF08821_consen 26 RKGAFARYDDED--VELVGFFTCGGCP-----GRKLVRRIKKLKKNGADVIHLSS 73 (107)
T ss_pred ccCccccCCCCC--eEEEEEeeCCCCC-----hhHHHHHHHHHHHCCCCEEEEcC
Confidence 344566665431 4455666555566 56666777778888999888874
No 256
>cd01460 vWA_midasin VWA_Midasin: Midasin is a member of the AAA ATPase family. The proteins of this family are unified by their common archetectural organization that is based upon a conserved ATPase domain. The AAA domain of midasin contains six tandem AAA protomers. The AAA domains in midasin is followed by a D/E rich domain that is following by a VWA domain. The members of this subgroup have a conserved MIDAS motif. The function of this domain is not exactly known although it has been speculated to play a crucial role in midasin function.
Probab=35.45 E-value=49 Score=28.70 Aligned_cols=19 Identities=11% Similarity=0.144 Sum_probs=14.4
Q ss_pred HHHhhhcCcEEEEEeCCCH
Q 026909 126 KARFDSAGVKLIAVGVGTP 144 (231)
Q Consensus 126 ~~~l~~~gv~lv~Is~~~~ 144 (231)
..++.+.|+.++.|..+++
T Consensus 187 ~r~a~e~~i~l~~I~ld~~ 205 (266)
T cd01460 187 LREAREQNVFVVFIIIDNP 205 (266)
T ss_pred HHHHHHcCCeEEEEEEcCC
Confidence 4556777888888887765
No 257
>PF01323 DSBA: DSBA-like thioredoxin domain; InterPro: IPR001853 DSBA is a sub-family of the Thioredoxin family []. The efficient and correct folding of bacterial disulphide bonded proteins in vivo is dependent upon a class of periplasmic oxidoreductase proteins called DsbA, after the Escherichia coli enzyme. The bacterial protein-folding factor DsbA is the most oxidizing of the thioredoxin family. DsbA catalyses disulphide-bond formation during the folding of secreted proteins. The extremely oxidizing nature of DsbA has been proposed to result from either domain motion or stabilising active-site interactions in the reduced form. DsbA's highly oxidizing nature is a result of hydrogen bond, electrostatic and helix-dipole interactions that favour the thiolate over the disulphide at the active site []. In the pathogenic bacterium Vibrio cholerae, the DsbA homologue (TcpG) is responsible for the folding, maturation and secretion of virulence factors. While the overall architecture of TcpG and DsbA is similar and the surface features are retained in TcpG, there are significant differences. For example, the kinked active site helix results from a three-residue loop in DsbA, but is caused by a proline in TcpG (making TcpG more similar to thioredoxin in this respect). Furthermore, the proposed peptide binding groove of TcpG is substantially shortened compared with that of DsbA due to a six-residue deletion. Also, the hydrophobic pocket of TcpG is more shallow and the acidic patch is much less extensive than that of E. coli DsbA [].; GO: 0015035 protein disulfide oxidoreductase activity; PDB: 3GL5_A 3DKS_D 3RPP_C 3RPN_B 1YZX_A 3L9V_C 2IMD_A 2IME_A 2IMF_A 2B3S_B ....
Probab=35.12 E-value=83 Score=24.74 Aligned_cols=40 Identities=15% Similarity=0.449 Sum_probs=28.7
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
|.||.-.-||+|-...+.|.++..++.+..+...-+....
T Consensus 2 i~~~~D~~Cp~cy~~~~~l~~l~~~~~~~~i~~~p~~l~~ 41 (193)
T PF01323_consen 2 IEFFFDFICPWCYLASPRLRKLRAEYPDVEIEWRPFPLRP 41 (193)
T ss_dssp EEEEEBTTBHHHHHHHHHHHHHHHHHTTCEEEEEEESSST
T ss_pred EEEEEeCCCHHHHHHHHHHHHHHHHhcCCcEEEecccccc
Confidence 4556689999999999999999888844444454455443
No 258
>cd03059 GST_N_SspA GST_N family, Stringent starvation protein A (SspA) subfamily; SspA is a RNA polymerase (RNAP)-associated protein required for the lytic development of phage P1 and for stationary phase-induced acid tolerance of E. coli. It is implicated in survival during nutrient starvation. SspA adopts the GST fold with an N-terminal TRX-fold domain and a C-terminal alpha helical domain, but it does not bind glutathione (GSH) and lacks GST activity. SspA is highly conserved among gram-negative bacteria. Related proteins found in Neisseria (called RegF), Francisella and Vibrio regulate the expression of virulence factors necessary for pathogenesis.
Probab=34.64 E-value=42 Score=21.82 Aligned_cols=18 Identities=11% Similarity=-0.071 Sum_probs=12.7
Q ss_pred EecCCCCcchHHHHHHHH
Q 026909 106 LLRHFGCPCCWELASALK 123 (231)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~ 123 (231)
.|...+||.|+.-.-.|.
T Consensus 3 ly~~~~~~~~~~v~~~l~ 20 (73)
T cd03059 3 LYSGPDDVYSHRVRIVLA 20 (73)
T ss_pred EEECCCChhHHHHHHHHH
Confidence 455678999988655554
No 259
>PF02114 Phosducin: Phosducin; InterPro: IPR024253 The outer and inner segments of vertebrate rod photoreceptor cells contain phosducin, a soluble phosphoprotein that complexes with the beta/gamma-subunits of the GTP-binding protein, transducin. Light-induced changes in cyclic nucleotide levels modulate the phosphorylation of phosducin by protein kinase A []. The protein is thought to participate in the regulation of visual phototransduction or in the integration of photo-receptor metabolism. Similar proteins have been isolated from the pineal gland and it is believed that the functional role of the protein is the same in both retina and pineal gland []. This entry represents a domain found in members of the phosducin family. This domain has a thioredoxin-like fold [].; PDB: 2DBC_A 1A0R_P 1B9Y_C 1B9X_C 2TRC_P 3EVI_B.
Probab=33.22 E-value=1.1e+02 Score=26.39 Aligned_cols=42 Identities=21% Similarity=0.324 Sum_probs=31.1
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
+.+||++|....++.|...-..|..++.++.. +++|-|....
T Consensus 146 ~~~VVVHiY~~~~~~C~~mn~~L~~LA~kyp~--vKFvkI~a~~ 187 (265)
T PF02114_consen 146 STWVVVHIYEPGFPRCEIMNSCLECLARKYPE--VKFVKIRASK 187 (265)
T ss_dssp T-EEEEEEE-TTSCCHHHHHHHHHHHHHH-TT--SEEEEEEECG
T ss_pred CcEEEEEEEeCCCchHHHHHHHHHHHHHhCCc--eEEEEEehhc
Confidence 35677777799999999988888888888764 8888876553
No 260
>cd06557 KPHMT-like Ketopantoate hydroxymethyltransferase (KPHMT) is the first enzyme in the pantothenate biosynthesis pathway. Ketopantoate hydroxymethyltransferase (KPHMT) catalyzes the first committed step in the biosynthesis of pantothenate (vitamin B5), which is a precursor to coenzyme A and is required for penicillin biosynthesis.
Probab=32.76 E-value=3.2e+02 Score=23.46 Aligned_cols=81 Identities=27% Similarity=0.372 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCccee-------ecCc-chHHHHhCCcccccceeeccChh
Q 026909 118 LASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLY-------ADPD-RKVYNLLGLYHGVGRTFFNPASA 189 (231)
Q Consensus 118 ~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl-------~D~~-~~~~~~~g~~~g~~~~~~~p~~~ 189 (231)
.+.++.+....+.+.|+..+.+-.=+.+.+++..++++.| ++ +|-+ .-++..+|+..+ +.|+..
T Consensus 156 ~a~~~i~ra~a~~~AGA~~i~lE~v~~~~~~~i~~~v~iP---~igiGaG~~~dgqvlv~~D~lG~~~~-----~~p~f~ 227 (254)
T cd06557 156 EAERLLEDALALEEAGAFALVLECVPAELAKEITEALSIP---TIGIGAGPDCDGQVLVWHDMLGLSPG-----FKPKFV 227 (254)
T ss_pred HHHHHHHHHHHHHHCCCCEEEEcCCCHHHHHHHHHhCCCC---EEEeccCCCCCceeehHHhhcCCCCC-----CCCCcH
Confidence 3677788888899999998888655667888999988888 55 3322 124778888754 234433
Q ss_pred hHhhH-HHHHHHHHhhcc
Q 026909 190 KVFSR-FEALRKAVQNYT 206 (231)
Q Consensus 190 ~v~~~-~~~l~~~~k~~~ 206 (231)
+.+.. ...+.++++.|.
T Consensus 228 k~~~~~~~~~~~a~~~y~ 245 (254)
T cd06557 228 KRYADLGELIREAVKAYV 245 (254)
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 33322 234455555553
No 261
>COG0796 MurI Glutamate racemase [Cell envelope biogenesis, outer membrane]
Probab=32.69 E-value=1.3e+02 Score=26.25 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=41.1
Q ss_pred cEEEEEecCCCCcchH---HHHHHHH-HHHHHhhhcCcEEEEEeCCCHH--HHHHHHhcCCCC
Q 026909 101 VAVVALLRHFGCPCCW---ELASALK-ESKARFDSAGVKLIAVGVGTPN--KAQILAERLPFP 157 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~---~~l~~L~-~~~~~l~~~gv~lv~Is~~~~~--~~~~~~~~~~fp 157 (231)
--++++.=...||+=. +++.++. ++.+.+.+.++++++|.|++.. .+...++++++|
T Consensus 31 e~~iY~~D~a~~PYG~ks~e~I~~~~~~i~~~l~~~~ik~lVIACNTASa~al~~LR~~~~iP 93 (269)
T COG0796 31 EDIIYVGDTARFPYGEKSEEEIRERTLEIVDFLLERGIKALVIACNTASAVALEDLREKFDIP 93 (269)
T ss_pred CcEEEEecCCCCCCCCCCHHHHHHHHHHHHHHHHHcCCCEEEEecchHHHHHHHHHHHhCCCC
Confidence 3456666667888854 4444443 4567888899999999999865 466777789999
No 262
>TIGR01761 thiaz-red thiazolinyl imide reductase. This reductase is found associated with gene clusters for the biosynthesis of various non-ribosomal peptide derived natural products in which cysteine is cyclized to a thiazoline ring containing an imide double bond. Examples include yersiniabactin (irp3/YbtU) and pyochelin (PchG).
Probab=32.60 E-value=43 Score=30.08 Aligned_cols=47 Identities=19% Similarity=0.268 Sum_probs=33.6
Q ss_pred CcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeecCc
Q 026909 112 CPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPD 166 (231)
Q Consensus 112 Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~~ 166 (231)
|.+.+.+++.+.+.. .++++++|..-+.+..++++++++.| .|.|.+
T Consensus 11 ~~~G~~h~~al~~~~-----~~~eLvaV~d~~~erA~~~A~~~gi~---~y~~~e 57 (343)
T TIGR01761 11 TRFGQFYLAAFAAAP-----ERFELAGILAQGSERSRALAHRLGVP---LYCEVE 57 (343)
T ss_pred HHHHHHHHHHHHhCC-----CCcEEEEEEcCCHHHHHHHHHHhCCC---ccCCHH
Confidence 334556666665431 16999999999999999999988877 555533
No 263
>TIGR03365 Bsubt_queE 7-cyano-7-deazaguanosine (preQ0) biosynthesis protein QueE. This uncharacterized enzyme, designated QueE, participates in the biosynthesis, from GTP, of 7-cyano-7-deazaguanosine, also called preQ0 because in many species it is a precursor of queuosine. In most Archaea, it is instead the precursor of a different tRNA modified base, archaeosine.
Probab=32.44 E-value=92 Score=26.21 Aligned_cols=48 Identities=8% Similarity=0.131 Sum_probs=28.9
Q ss_pred HHHHHHHhhhcCcEEEEEeCCCHHHHH---HHHh---cCCCCCcceeecCcchHHHH
Q 026909 122 LKESKARFDSAGVKLIAVGVGTPNKAQ---ILAE---RLPFPMDCLYADPDRKVYNL 172 (231)
Q Consensus 122 L~~~~~~l~~~gv~lv~Is~~~~~~~~---~~~~---~~~fp~~~vl~D~~~~~~~~ 172 (231)
+.+...++...++..|.++-++|-... ++.+ +.++. +....++.+...
T Consensus 61 i~~~i~~~~~~~~~~V~lTGGEPll~~~l~~li~~l~~~g~~---v~leTNGtl~~~ 114 (238)
T TIGR03365 61 VWQELKALGGGTPLHVSLSGGNPALQKPLGELIDLGKAKGYR---FALETQGSVWQD 114 (238)
T ss_pred HHHHHHHHhCCCCCeEEEeCCchhhhHhHHHHHHHHHHCCCC---EEEECCCCCcHH
Confidence 333333343445777888888875432 2222 57888 778888876544
No 264
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=32.17 E-value=1.4e+02 Score=22.16 Aligned_cols=48 Identities=27% Similarity=0.359 Sum_probs=28.6
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC--CHHHHHHHHh
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG--TPNKAQILAE 152 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~--~~~~~~~~~~ 152 (231)
+.+++++ ..+.+.... ...+...++++.|+.++.|+.+ +.+.++.+..
T Consensus 104 ~~~iili-TDG~~~~~~---~~~~~~~~~~~~~v~v~~i~~g~~~~~~l~~la~ 153 (161)
T cd01450 104 PKVIIVL-TDGRSDDGG---DPKEAAAKLKDEGIKVFVVGVGPADEEELREIAS 153 (161)
T ss_pred CeEEEEE-CCCCCCCCc---chHHHHHHHHHCCCEEEEEeccccCHHHHHHHhC
Confidence 3444444 555555432 4455556667779999988887 4444555544
No 265
>PRK08132 FAD-dependent oxidoreductase; Provisional
Probab=31.89 E-value=1.2e+02 Score=28.61 Aligned_cols=88 Identities=17% Similarity=0.129 Sum_probs=51.9
Q ss_pred CCCCCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHH
Q 026909 69 PANVGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQ 148 (231)
Q Consensus 69 ~~~vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~ 148 (231)
...+|..+|+..+.+ +|+.+++.|+.+. +.++|.|- .. .. . ....+. ......+++++.|..+....
T Consensus 426 ~~~pG~r~p~~~~~~-~~~~~~l~dl~g~--~f~ll~~~-~~-~~----~-~~~~~~-~~~~~~~~~~~~~~~~~~~~-- 492 (547)
T PRK08132 426 GPVPGAPAPDAPVRA-DGEPGWLLDLLGG--GFTLLLFG-DD-AA----A-AALLQA-LAAAALPVRVVAVVPAGAAQ-- 492 (547)
T ss_pred CCCCCCCCCCCcccC-CCCceEHHHhcCC--CEEEEEec-CC-ch----h-hhhhhh-hhccCCceEEEEEecCcccc--
Confidence 467899999998874 5778899999865 35555443 21 10 0 111111 11223446666666443110
Q ss_pred HHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 149 ILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 149 ~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
.+-. .+.|+++.+.+.||+..
T Consensus 493 -----~~~~---~~~d~~~~~~~~~~~~~ 513 (547)
T PRK08132 493 -----AAAG---VLEDADGLAAERYDARP 513 (547)
T ss_pred -----cCcc---cccCcccHHHHHhCCCC
Confidence 1222 57899999999999854
No 266
>TIGR01485 SPP_plant-cyano sucrose-6F-phosphate phosphohydrolase. Sucrose phosphate synthase (SPS), the prior step in the biosynthesis of sucrose contains a domain which exhibits considerable similarity to SPP albeit without conservation of the catalytic residues. The catalytic machinery of the synthase resides in another domain. It seems likely that the phosphatase-like domain is involved in substrate binding, possibly binding both substrates in a "product-like" orientation prior to ligation by the synthase catalytic domain.
Probab=31.56 E-value=1.8e+02 Score=24.23 Aligned_cols=42 Identities=12% Similarity=0.062 Sum_probs=34.3
Q ss_pred HHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 116 WELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 116 ~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
....+++.+...++.++|+.+|.++.-+...++.+.+.++.+
T Consensus 20 ~~~~~~~~~~i~~~~~~gi~fv~aTGR~~~~~~~~~~~~~~~ 61 (249)
T TIGR01485 20 NQALLRLNALLEDHRGEDSLLVYSTGRSPHSYKELQKQKPLL 61 (249)
T ss_pred hHHHHHHHHHHHHhhccCceEEEEcCCCHHHHHHHHhcCCCC
Confidence 456788899999999999988888888888888888765543
No 267
>KOG1615 consensus Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=29.82 E-value=68 Score=26.81 Aligned_cols=39 Identities=21% Similarity=0.364 Sum_probs=28.3
Q ss_pred HHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCC
Q 026909 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPM 158 (231)
Q Consensus 120 ~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~ 158 (231)
|...++...|++.|++|+.||-+=...+...++.++.|.
T Consensus 91 ~Gi~eLv~~L~~~~~~v~liSGGF~~~i~~Va~~Lgi~~ 129 (227)
T KOG1615|consen 91 PGIRELVSRLHARGTQVYLISGGFRQLIEPVAEQLGIPK 129 (227)
T ss_pred CCHHHHHHHHHHcCCeEEEEcCChHHHHHHHHHHhCCcH
Confidence 445666777889999999999776655555555677664
No 268
>TIGR03140 AhpF alkyl hydroperoxide reductase, F subunit. This enzyme is the partner of the peroxiredoxin (alkyl hydroperoxide reductase) AhpC which contains the peroxide-reactive cysteine. AhpF contains the reductant (NAD(P)H) binding domain (pfam00070) and presumably acts to resolve the disulfide which forms after oxidation of the active site cysteine in AphC. This proteins contains two paired conserved cysteine motifs, CxxCP and CxHCDGP.
Probab=29.59 E-value=1.7e+02 Score=27.63 Aligned_cols=40 Identities=13% Similarity=0.170 Sum_probs=27.6
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV 141 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~ 141 (231)
+++-+-.|-...||+|..-...+.++..+.. +|..-.|..
T Consensus 117 ~~~~i~~f~~~~Cp~Cp~~v~~~~~~a~~~p--~i~~~~id~ 156 (515)
T TIGR03140 117 GPLHFETYVSLTCQNCPDVVQALNQMALLNP--NISHTMIDG 156 (515)
T ss_pred CCeEEEEEEeCCCCCCHHHHHHHHHHHHhCC--CceEEEEEc
Confidence 3665666669999999987777777765433 566555543
No 269
>PHA00649 hypothetical protein
Probab=29.42 E-value=44 Score=22.87 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=25.2
Q ss_pred CCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcC
Q 026909 110 FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERL 154 (231)
Q Consensus 110 ~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~ 154 (231)
...|.|++..-.-... -+.+++|..++++++++|++++
T Consensus 6 cdtpacqEAA~rAV~~-------~~~~LGVD~~~P~~VEEFr~D~ 43 (83)
T PHA00649 6 CDTPACQEAADRAVKK-------VFAILGVDVDVPEQVEEFREDL 43 (83)
T ss_pred CCchHHHHHHHHHHHH-------HHHHHcCCCCCHHHHHHHHHHH
Confidence 3457787655433221 2345778889999999999864
No 270
>cd03025 DsbA_FrnE_like DsbA family, FrnE-like subfamily; composed of uncharacterized proteins containing a CXXC motif with similarity to DsbA and FrnE. FrnE is presumed to be a thiol oxidoreductase involved in polyketide biosynthesis, specifically in the production of the aromatic antibiotics frenolicin and nanaomycins.
Probab=29.38 E-value=61 Score=25.62 Aligned_cols=33 Identities=15% Similarity=0.404 Sum_probs=23.8
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEE
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLI 137 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv 137 (231)
|.+|.-+.||+|-.-.+.|.++..++. .++.+.
T Consensus 3 i~~~~D~~cp~c~~~~~~l~~l~~~~~-~~~~v~ 35 (193)
T cd03025 3 LYYFIDPLCGWCYGFEPLLEKLKEEYG-GGIEVE 35 (193)
T ss_pred EEEEECCCCchhhCchHHHHHHHHHhC-CCceEE
Confidence 456668899999988888888887772 334433
No 271
>KOG0713 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=28.77 E-value=18 Score=32.40 Aligned_cols=33 Identities=27% Similarity=0.551 Sum_probs=27.2
Q ss_pred eCCCHHHHHHHHh-cCCCCCcceeecCc-chHHHHhCC
Q 026909 140 GVGTPNKAQILAE-RLPFPMDCLYADPD-RKVYNLLGL 175 (231)
Q Consensus 140 s~~~~~~~~~~~~-~~~fp~~~vl~D~~-~~~~~~~g~ 175 (231)
+.|++.+...|.+ +.-|- ||+||+ ++.|..+|.
T Consensus 49 Npddp~A~e~F~~in~AYE---VLsDpekRk~YD~~GE 83 (336)
T KOG0713|consen 49 NPDDPNANEKFKEINAAYE---VLSDPEKRKHYDTYGE 83 (336)
T ss_pred CCCCHHHHHHHHHHHHHHH---HhcCHHHHHHHHhhhH
Confidence 4678888999988 66777 999987 668999985
No 272
>PRK00366 ispG 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase; Reviewed
Probab=28.69 E-value=3.8e+02 Score=24.41 Aligned_cols=80 Identities=26% Similarity=0.328 Sum_probs=48.4
Q ss_pred HHHHHhhhcCcEEEEEeCCCHHHHHHHHh---cCCCCCcceeecCcchHHHHhCCc-ccccceeeccChhhH-hhHHHHH
Q 026909 124 ESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADPDRKVYNLLGLY-HGVGRTFFNPASAKV-FSRFEAL 198 (231)
Q Consensus 124 ~~~~~l~~~gv~lv~Is~~~~~~~~~~~~---~~~fp~~~vl~D~~~~~~~~~g~~-~g~~~~~~~p~~~~v-~~~~~~l 198 (231)
+...++.+.|+++|=|.+.+.+.++++.+ +.+.| +++|-.-+.--++... .|..---.+|..... ...++.+
T Consensus 46 ~Qi~~L~~aGceiVRvav~~~~~a~al~~I~~~~~iP---lvADIHFd~~lAl~a~~~G~~~iRINPGNig~~~~~v~~v 122 (360)
T PRK00366 46 AQIKRLARAGCEIVRVAVPDMEAAAALPEIKKQLPVP---LVADIHFDYRLALAAAEAGADALRINPGNIGKRDERVREV 122 (360)
T ss_pred HHHHHHHHcCCCEEEEccCCHHHHHhHHHHHHcCCCC---EEEecCCCHHHHHHHHHhCCCEEEECCCCCCchHHHHHHH
Confidence 33445678899999999988777666654 79999 9999765543333221 111111256755433 3455666
Q ss_pred HHHHhhcc
Q 026909 199 RKAVQNYT 206 (231)
Q Consensus 199 ~~~~k~~~ 206 (231)
.+..|..+
T Consensus 123 v~~ak~~~ 130 (360)
T PRK00366 123 VEAAKDYG 130 (360)
T ss_pred HHHHHHCC
Confidence 56666544
No 273
>PF03960 ArsC: ArsC family; InterPro: IPR006660 Several bacterial taxon have a chromosomal resistance system, encoded by the ars operon, for the detoxification of arsenate, arsenite, and antimonite []. This system transports arsenite and antimonite out of the cell. The pump is composed of two polypeptides, the products of the arsA and arsB genes. This two-subunit enzyme produces resistance to arsenite and antimonite. Arsenate, however, must first be reduced to arsenite before it is extruded. A third gene, arsC, expands the substrate specificity to allow for arsenate pumping and resistance. ArsC is an approximately 150-residue arsenate reductase that uses reduced glutathione (GSH) to convert arsenate to arsenite with a redox active cysteine residue in the active site. ArsC forms an active quaternary complex with GSH, arsenate, and glutaredoxin 1 (Grx1). The three ligands must be present simultaneously for reduction to occur []. The arsC family also comprises the Spx proteins which are GRAM-positive bacterial transcription factors that regulate the transcription of multiple genes in response to disulphide stress []. The arsC protein structure has been solved []. It belongs to the thioredoxin superfamily fold which is defined by a beta-sheet core surrounded by alpha-helices. The active cysteine residue of ArsC is located in the loop between the first beta-strand and the first helix, which is also conserved in the Spx protein and its homologues.; PDB: 2KOK_A 1SK1_A 1SK2_A 1JZW_A 1J9B_A 1S3C_A 1SD8_A 1SD9_A 1I9D_A 1SK0_A ....
Probab=28.68 E-value=1.3e+02 Score=21.86 Aligned_cols=58 Identities=19% Similarity=0.283 Sum_probs=36.7
Q ss_pred CCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC----CHHHHHHHHhcCCCCCcceeecCcchHHHHhC
Q 026909 109 HFGCPCCWELASALKESKARFDSAGVKLIAVGVG----TPNKAQILAERLPFPMDCLYADPDRKVYNLLG 174 (231)
Q Consensus 109 ~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~----~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g 174 (231)
...|..|++.+.-|. +.|+.+..|..- +.+.+.+|.+.++...+ -+....+..|+.++
T Consensus 3 ~~~C~t~rka~~~L~-------~~gi~~~~~d~~k~p~s~~el~~~l~~~~~~~~-~lin~~~~~~k~l~ 64 (110)
T PF03960_consen 3 NPNCSTCRKALKWLE-------ENGIEYEFIDYKKEPLSREELRELLSKLGNGPD-DLINTRSKTYKELG 64 (110)
T ss_dssp -TT-HHHHHHHHHHH-------HTT--EEEEETTTS---HHHHHHHHHHHTSSGG-GGB-TTSHHHHHTT
T ss_pred CCCCHHHHHHHHHHH-------HcCCCeEeehhhhCCCCHHHHHHHHHHhcccHH-HHhcCccchHhhhh
Confidence 467888887665554 567777777754 35678888886663222 56688999999999
No 274
>TIGR01488 HAD-SF-IB Haloacid Dehalogenase superfamily, subfamily IB, phosphoserine phosphatase-like. Subfamily IA includes the enzyme phosphoserine phosphatase (TIGR00338) as well as three hypothetical equivalogs. Many members of these hypothetical equivalogs have been annotated as PSPase-like or PSPase-family proteins. In particular, the hypothetical equivalog which appears to be most closely related to PSPase contains only Archaea (while TIGR00338 contains only eukaryotes and bacteria) of which some are annotated as PSPases. Although this is a reasonable conjecture, none of these sequences has sufficient evidence for this assignment. If such should be found, this model should be retired while the PSPase model should be broadened to include these sequences.
Probab=28.01 E-value=1.1e+02 Score=23.61 Aligned_cols=38 Identities=18% Similarity=0.219 Sum_probs=30.3
Q ss_pred HHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 120 ~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
+.+.+..+.+++.|+.++.||.+....++.+.+.+++.
T Consensus 76 ~g~~~~l~~l~~~g~~~~ivS~~~~~~i~~~~~~~g~~ 113 (177)
T TIGR01488 76 PGARELISWLKERGIDTVIVSGGFDFFVEPVAEKLGID 113 (177)
T ss_pred cCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCc
Confidence 55667777788899999999988888888888876655
No 275
>TIGR02743 TraW type-F conjugative transfer system protein TraW. This protein is an essential component of the F-type conjugative transfer sytem for plasmid DNA transfer and has been shown to be localized to the periplasm.
Probab=27.79 E-value=1e+02 Score=25.62 Aligned_cols=53 Identities=28% Similarity=0.346 Sum_probs=34.4
Q ss_pred HHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCcceeecCcchHHHHhCCcc
Q 026909 116 WELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPDRKVYNLLGLYH 177 (231)
Q Consensus 116 ~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~ 177 (231)
..++.-..+.+... .++++|.++ |++. +..+.++=+ +|.|.++.+.+.||++.
T Consensus 133 ~~Qv~wa~~~~~~~--~~~k~IL~~-Gs~~---~l~~~l~~~---vYfdQ~g~Lt~rF~I~~ 185 (202)
T TIGR02743 133 PEQLAWAQQQLPSC--PNVKWILTG-GSVN---ELEKRLDSR---IYFDQHGKLTQKFGIKH 185 (202)
T ss_pred HHHHHHHHHhcccC--CCeEEEEeC-CCHH---HHHHHhCCc---eEEcCCchHhhccCcee
Confidence 45555555544332 147788777 4432 334445666 99999999999999964
No 276
>KOG0913 consensus Thiol-disulfide isomerase and thioredoxin [Posttranslational modification, protein turnover, chaperones; Energy production and conversion]
Probab=27.79 E-value=30 Score=29.51 Aligned_cols=37 Identities=22% Similarity=0.262 Sum_probs=27.3
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEE
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIA 138 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~ 138 (231)
-.++.|+ ++|||-|....+.+...+.--.+.+|++--
T Consensus 41 ewmi~~~-ap~~psc~~~~~~~~~~a~~s~dL~v~va~ 77 (248)
T KOG0913|consen 41 EWMIEFG-APWCPSCSDLIPHLENFATVSLDLGVKVAK 77 (248)
T ss_pred HHHHHhc-CCCCccccchHHHHhccCCccCCCceeEEE
Confidence 4555555 999999999999998887655556666433
No 277
>TIGR01490 HAD-SF-IB-hyp1 HAD-superfamily subfamily IB hydrolase, TIGR01490. A subset of these sequences, including the Caulobacter crescentus CicA protein, cluster together and may represent a separate equivalog.
Probab=27.28 E-value=1.5e+02 Score=23.49 Aligned_cols=39 Identities=13% Similarity=0.098 Sum_probs=29.6
Q ss_pred HHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 119 l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
.+...+..+.+++.|.+++.|+.+....++.+.+.+++.
T Consensus 89 ~~~~~~~l~~l~~~g~~v~ivS~s~~~~v~~~~~~lg~~ 127 (202)
T TIGR01490 89 YPEARDLIRWHKAEGHTIVLVSASLTILVKPLARILGID 127 (202)
T ss_pred cHHHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHcCCc
Confidence 344455556677889999999988878888888877765
No 278
>cd03045 GST_N_Delta_Epsilon GST_N family, Class Delta and Epsilon subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. GSTs also show GSH peroxidase activity and are involved in the synthesis of prostaglandins and leukotrienes. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. The class Delta and Epsilon subfamily is made up primarily of insect GSTs, which play major roles in insecticide resistance by facilitating reductive dehydrochlorination of insecticides or conjugating them with GSH to produce water-soluble metabolites that are easily excreted. They are also implicated in protection against cellular damage by oxidative stress.
Probab=26.76 E-value=1.1e+02 Score=19.93 Aligned_cols=53 Identities=17% Similarity=0.153 Sum_probs=27.9
Q ss_pred EecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH-HHHHHHhc---CCCCCcceeecCc
Q 026909 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN-KAQILAER---LPFPMDCLYADPD 166 (231)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~-~~~~~~~~---~~fp~~~vl~D~~ 166 (231)
+|...+||.|+.-.-.|.+. ...++++-|...+.+ ...+|.+. -..| ++.|.+
T Consensus 3 Ly~~~~~~~~~~v~~~l~~~-----gi~~e~~~i~~~~~~~~~~~~~~~~p~~~vP---~l~~~~ 59 (74)
T cd03045 3 LYYLPGSPPCRAVLLTAKAL-----GLELNLKEVNLMKGEHLKPEFLKLNPQHTVP---TLVDNG 59 (74)
T ss_pred EEeCCCCCcHHHHHHHHHHc-----CCCCEEEEecCccCCcCCHHHHhhCcCCCCC---EEEECC
Confidence 45577899998644444432 223455555543222 22445542 3467 676654
No 279
>cd05017 SIS_PGI_PMI_1 The members of this protein family contain the SIS (Sugar ISomerase) domain and have both the phosphoglucose isomerase (PGI) and the phosphomannose isomerase (PMI) functions. These functions catalyze the reversible reactions of glucose 6-phosphate to fructose 6-phosphate, and mannose 6-phosphate to fructose 6-phosphate, respectively at an equal rate. This protein contains two SIS domains. This alignment is based on the first SIS domain.
Probab=26.76 E-value=2.3e+02 Score=20.62 Aligned_cols=49 Identities=16% Similarity=0.196 Sum_probs=31.7
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
..+++++-..+. .+++.+..+..++.|+.+|+|..+.+ +.++.++.+++
T Consensus 44 ~dl~I~iS~SG~------t~e~i~~~~~a~~~g~~iI~IT~~~~--l~~~~~~~~~~ 92 (119)
T cd05017 44 KTLVIAVSYSGN------TEETLSAVEQAKERGAKIVAITSGGK--LLEMAREHGVP 92 (119)
T ss_pred CCEEEEEECCCC------CHHHHHHHHHHHHCCCEEEEEeCCch--HHHHHHHcCCc
Confidence 556667756554 24444445556677999999996553 66677655666
No 280
>PRK05778 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Validated
Probab=26.73 E-value=80 Score=27.84 Aligned_cols=23 Identities=26% Similarity=0.457 Sum_probs=15.1
Q ss_pred ecCCCCcchH--HHHHHHHHHHHHh
Q 026909 107 LRHFGCPCCW--ELASALKESKARF 129 (231)
Q Consensus 107 ~r~~~Cp~C~--~~l~~L~~~~~~l 129 (231)
+++.|||.|- ..+..+.+...++
T Consensus 16 ~~~~~CpGCg~~~i~~~i~~al~~l 40 (301)
T PRK05778 16 LPTTWCPGCGNFGILNAIIQALAEL 40 (301)
T ss_pred CCCCCCCCCCChHHHHHHHHHHHHh
Confidence 4578999995 3555555555554
No 281
>KOG0911 consensus Glutaredoxin-related protein [Posttranslational modification, protein turnover, chaperones]
Probab=26.04 E-value=58 Score=27.53 Aligned_cols=42 Identities=7% Similarity=0.094 Sum_probs=29.0
Q ss_pred CcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC
Q 026909 100 GVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT 143 (231)
Q Consensus 100 g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~ 143 (231)
++.++..|++.||..|.....-+....+.+ .+++++-+..+.
T Consensus 17 ~~~~~~~f~a~wa~~~~q~~~v~~~~~~~~--~~~~~~k~~a~~ 58 (227)
T KOG0911|consen 17 GKLLVLHFWAIWAVVQKQMDQVFDHLAEYF--KNAQFLKLEAEE 58 (227)
T ss_pred cchhhhhhhhhhhhhhhhHHHHHHHHHHhh--hhheeeeehhhh
Confidence 467778888999999988766666666555 445555555443
No 282
>PRK13600 putative ribosomal protein L7Ae-like; Provisional
Probab=25.81 E-value=2.4e+02 Score=19.88 Aligned_cols=56 Identities=11% Similarity=0.130 Sum_probs=39.4
Q ss_pred HHHHHHHhhhcCcEEEEEeCC-CHHH---HHHHHhcCCCCCcceeecCcchHHHHhCCcccc
Q 026909 122 LKESKARFDSAGVKLIAVGVG-TPNK---AQILAERLPFPMDCLYADPDRKVYNLLGLYHGV 179 (231)
Q Consensus 122 L~~~~~~l~~~gv~lv~Is~~-~~~~---~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~g~ 179 (231)
.++....+++..+.+|.|..| ++.. +...+++.+.|. ++.|.-.++-++.|+..+.
T Consensus 18 ~kqt~Kai~kg~~~~v~iA~Da~~~vv~~l~~lceek~Ip~--v~V~s~~~LGkAcgi~V~a 77 (84)
T PRK13600 18 LKETLKALKKDQVTSLIIAEDVEVYLMTRVLSQINQKNIPV--SFFKSKHALGKHVGINVNA 77 (84)
T ss_pred HHHHHHHHhcCCceEEEEeCCCCHHHHHHHHHHHHHcCCCE--EEECCHHHHHHHhCCCcCe
Confidence 455556666666888888877 3433 344455788885 7888889999999998653
No 283
>TIGR01616 nitro_assoc nitrogenase-associated protein. This model describes a small family of uncharacterized proteins found so far in alpha and gamma proteobacteria and in Nostoc sp. PCC 7120, a cyanobacterium. The gene for this protein is associated with nitrogenase genes. This family shows sequence similarity to TIGR00014, a glutaredoxin-dependent arsenate reductase that converts arsentate to arsenite for disposal. This family is one of several included in Pfam model pfam03960.
Probab=25.80 E-value=1.5e+02 Score=22.47 Aligned_cols=63 Identities=11% Similarity=0.112 Sum_probs=43.2
Q ss_pred EEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeC--C--CHHHHHHHHhcCCCCCcceeecCcchHHHHhCCc
Q 026909 104 VALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGV--G--TPNKAQILAERLPFPMDCLYADPDRKVYNLLGLY 176 (231)
Q Consensus 104 L~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~--~--~~~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~ 176 (231)
+.+|....|.-|++...-|. +.|+.+-.+.. + +.+.++.|.+..+.. -+....+..|+.++..
T Consensus 3 i~iY~~p~Cst~RKA~~~L~-------~~gi~~~~~d~~~~p~t~~eL~~~l~~~g~~---~lin~~~~~~r~l~~~ 69 (126)
T TIGR01616 3 IIFYEKPGCANNARQKAALK-------ASGHDVEVQDILKEPWHADTLRPYFGNKPVG---SWFNRAAPRVKSGEVN 69 (126)
T ss_pred EEEEeCCCCHHHHHHHHHHH-------HCCCCcEEEeccCCCcCHHHHHHHHHHcCHH---HHHhccchHhhhCCCC
Confidence 45677889999998666555 44666555543 2 567799998877644 4556677788887754
No 284
>cd03040 GST_N_mPGES2 GST_N family; microsomal Prostaglandin E synthase Type 2 (mPGES2) subfamily; mPGES2 is a membrane-anchored dimeric protein containing a CXXC motif which catalyzes the isomerization of PGH2 to PGE2. Unlike cytosolic PGE synthase (cPGES) and microsomal PGES Type 1 (mPGES1), mPGES2 does not require glutathione (GSH) for its activity, although its catalytic rate is increased two- to four-fold in the presence of DTT, GSH or other thiol compounds. PGE2 is widely distributed in various tissues and is implicated in the sleep/wake cycle, relaxation/contraction of smooth muscle, excretion of sodium ions, maintenance of body temperature and mediation of inflammation. mPGES2 contains an N-terminal hydrophobic domain which is membrane associated, and a C-terminal soluble domain with a GST-like structure.
Probab=25.70 E-value=77 Score=20.94 Aligned_cols=49 Identities=18% Similarity=0.276 Sum_probs=25.9
Q ss_pred EecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHh--cCCCCCcceeecC
Q 026909 106 LLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE--RLPFPMDCLYADP 165 (231)
Q Consensus 106 f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~--~~~fp~~~vl~D~ 165 (231)
.|....||+|++-.-.|.+ +|+..-.+..+... ..++.. .-..| ++.+.
T Consensus 4 Ly~~~~~p~c~kv~~~L~~-------~gi~y~~~~~~~~~-~~~~~~~~~~~vP---~l~~~ 54 (77)
T cd03040 4 LYQYKTCPFCCKVRAFLDY-------HGIPYEVVEVNPVS-RKEIKWSSYKKVP---ILRVE 54 (77)
T ss_pred EEEcCCCHHHHHHHHHHHH-------CCCceEEEECCchh-HHHHHHhCCCccC---EEEEC
Confidence 4446789999986655543 45554444443321 122222 34567 66654
No 285
>cd02983 P5_C P5 family, C-terminal redox inactive TRX-like domain; P5 is a protein disulfide isomerase (PDI)-related protein with a domain structure of aa'b (where a and a' are redox active TRX domains and b is a redox inactive TRX-like domain). Like PDI, P5 is located in the endoplasmic reticulum (ER) and displays both isomerase and chaperone activities, which are independent of each other. Compared to PDI, the isomerase and chaperone activities of P5 are lower. The first cysteine in the CXXC motif of both redox active domains in P5 is necessary for isomerase activity. The P5 gene was first isolated as an amplified gene from a hydroxyurea-resistant hamster cell line. The zebrafish P5 homolog has been implicated to play a critical role in establishing left/right asymmetries in the embryonic midline. The C-terminal domain is likely involved in substrate binding, similar to the b and b' domains of PDI.
Probab=25.68 E-value=3e+02 Score=20.80 Aligned_cols=66 Identities=15% Similarity=0.291 Sum_probs=42.8
Q ss_pred CcEEEEEecCC-CCc-chH-HHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHh--cCCCCCcceeecCc
Q 026909 100 GVAVVALLRHF-GCP-CCW-ELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE--RLPFPMDCLYADPD 166 (231)
Q Consensus 100 g~~vL~f~r~~-~Cp-~C~-~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~--~~~fp~~~vl~D~~ 166 (231)
+-++|.|+++. .|- -++ .+...|.+.+.+++.+.+.++-|..+....+.++-. ..+||.- ++.+.+
T Consensus 21 ~~C~i~~l~~~~d~~~e~~~~~~~~l~~vAk~~kgk~i~Fv~vd~~~~~~~~~~fgl~~~~~P~v-~i~~~~ 91 (130)
T cd02983 21 QLCIIAFLPHILDCQASCRNKYLEILKSVAEKFKKKPWGWLWTEAGAQLDLEEALNIGGFGYPAM-VAINFR 91 (130)
T ss_pred CeEEEEEcCccccCCHHHHHHHHHHHHHHHHHhcCCcEEEEEEeCcccHHHHHHcCCCccCCCEE-EEEecc
Confidence 46788888764 232 254 467888888999988878888888887655444433 2467742 333443
No 286
>COG5561 Predicted metal-binding protein [Function unknown]
Probab=25.50 E-value=51 Score=23.81 Aligned_cols=29 Identities=31% Similarity=0.603 Sum_probs=24.6
Q ss_pred CCCcchHHHHHHHHHHHHHhhhcCcEEEEE
Q 026909 110 FGCPCCWELASALKESKARFDSAGVKLIAV 139 (231)
Q Consensus 110 ~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~I 139 (231)
.+||.|..-+.++++-...|++. |+|+++
T Consensus 5 ~gCPG~v~CfKA~ne~~g~Fe~y-v~viaf 33 (101)
T COG5561 5 YGCPGEVRCFKAANEGEGKFEEY-VRVIAF 33 (101)
T ss_pred cCCCchHHHHHHHhccccccccc-EEEEEE
Confidence 47999999999999888888776 888884
No 287
>cd05013 SIS_RpiR RpiR-like protein. RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.
Probab=25.48 E-value=1.9e+02 Score=20.99 Aligned_cols=46 Identities=22% Similarity=0.180 Sum_probs=30.2
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHh
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE 152 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~ 152 (231)
..+++++-..+.. +.+.+..+..++.|+++|+|+.+....+..+.+
T Consensus 61 ~~~~i~iS~~g~~------~~~~~~~~~a~~~g~~iv~iT~~~~~~l~~~~d 106 (139)
T cd05013 61 GDVVIAISFSGET------KETVEAAEIAKERGAKVIAITDSANSPLAKLAD 106 (139)
T ss_pred CCEEEEEeCCCCC------HHHHHHHHHHHHcCCeEEEEcCCCCChhHHhcC
Confidence 4566666555554 445555566778899999999876555555554
No 288
>PF13419 HAD_2: Haloacid dehalogenase-like hydrolase; PDB: 2FI1_A 2I6X_A 3SD7_A 4F71_A 4DFD_B 4F72_B 4DCC_A 3DDH_A 3KZX_A 2B0C_A ....
Probab=25.45 E-value=1.1e+02 Score=23.06 Aligned_cols=36 Identities=25% Similarity=0.467 Sum_probs=26.0
Q ss_pred HHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCC
Q 026909 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERLP 155 (231)
Q Consensus 120 ~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~ 155 (231)
+.+.+...++++.|+++++++..+...+....++++
T Consensus 80 ~~~~~~L~~l~~~~~~~~i~Sn~~~~~~~~~l~~~~ 115 (176)
T PF13419_consen 80 PGVRELLERLKAKGIPLVIVSNGSRERIERVLERLG 115 (176)
T ss_dssp TTHHHHHHHHHHTTSEEEEEESSEHHHHHHHHHHTT
T ss_pred hhhhhhhhhcccccceeEEeecCCcccccccccccc
Confidence 344556666777899999999888877776666433
No 289
>COG5418 Predicted secreted protein [Function unknown]
Probab=25.44 E-value=1.1e+02 Score=24.21 Aligned_cols=56 Identities=20% Similarity=0.313 Sum_probs=38.8
Q ss_pred CcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC
Q 026909 75 LLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (231)
Q Consensus 75 ~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~ 142 (231)
+-|+|.+......+.+=..+ ++ +| .=-.|++.+.-+.+..++++..|++++.|++.
T Consensus 51 PCPE~~yLg~~R~~~tke~~-d~-~~----------yRr~c~ki~~pi~~~l~e~k~d~~kii~IGV~ 106 (164)
T COG5418 51 PCPEFEYLGWPRPPMTKEVF-DH-PG----------YRRVCRKIADPIGRVLEEEKPDGIKIIFIGVK 106 (164)
T ss_pred cCchHHhhCCCCCCcCHHHh-cc-hh----------HHHHHHHHHHHHHHHHHHhCcCCceEEEEecC
Confidence 35677777666555554333 21 01 12359999999999999999999999998864
No 290
>cd03055 GST_N_Omega GST_N family, Class Omega subfamily; GSTs are cytosolic dimeric proteins involved in cellular detoxification by catalyzing the conjugation of glutathione (GSH) with a wide range of endogenous and xenobiotic alkylating agents, including carcinogens, therapeutic drugs, environmental toxins and products of oxidative stress. The GST fold contains an N-terminal TRX-fold domain and a C-terminal alpha helical domain, with an active site located in a cleft between the two domains. Class Omega GSTs show little or no GSH-conjugating activity towards standard GST substrates. Instead, they catalyze the GSH dependent reduction of protein disulfides, dehydroascorbate and monomethylarsonate, activities which are more characteristic of glutaredoxins. They contain a conserved cysteine equivalent to the first cysteine in the CXXC motif of glutaredoxins, which is a redox active residue capable of reducing GSH mixed disulfides in a monothiol mechanism. Polymorphisms of the class Omega
Probab=25.16 E-value=1.8e+02 Score=20.05 Aligned_cols=51 Identities=14% Similarity=0.128 Sum_probs=26.4
Q ss_pred EEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHh---cCCCCCcceeecC
Q 026909 105 ALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADP 165 (231)
Q Consensus 105 ~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~---~~~fp~~~vl~D~ 165 (231)
.+|....||+|+.-.-.|... ...++++-|..... -..|.+ .-..| ++.+.
T Consensus 20 ~Ly~~~~sp~~~kv~~~L~~~-----gl~~~~~~v~~~~~--~~~~~~~np~~~vP---vL~~~ 73 (89)
T cd03055 20 RLYSMRFCPYAQRARLVLAAK-----NIPHEVININLKDK--PDWFLEKNPQGKVP---ALEID 73 (89)
T ss_pred EEEeCCCCchHHHHHHHHHHc-----CCCCeEEEeCCCCC--cHHHHhhCCCCCcC---EEEEC
Confidence 334467799999755444432 22244555554321 123444 24567 67654
No 291
>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed
Probab=25.06 E-value=1.5e+02 Score=24.11 Aligned_cols=38 Identities=16% Similarity=0.129 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 119 l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
.|.+.+..+.+++.|+.++.||.+....+....+++ ++
T Consensus 76 ~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~-~~ 113 (219)
T PRK09552 76 REGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL-IP 113 (219)
T ss_pred CcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh-CC
Confidence 456677778888999999999988877777777765 44
No 292
>COG0552 FtsY Signal recognition particle GTPase [Intracellular trafficking and secretion]
Probab=24.72 E-value=4.4e+02 Score=23.78 Aligned_cols=68 Identities=15% Similarity=0.243 Sum_probs=39.8
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC-----HHHHHHHHhcCCCCCcceee-----cCcchHH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT-----PNKAQILAERLPFPMDCLYA-----DPDRKVY 170 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~-----~~~~~~~~~~~~fp~~~vl~-----D~~~~~~ 170 (231)
+.|++|+.-.+.+-- .. +.+++..|.+.|.+++....|+ .++++.|.++.+.+ ++. ||..-.|
T Consensus 139 p~Vil~vGVNG~GKT-TT---IaKLA~~l~~~g~~VllaA~DTFRAaAiEQL~~w~er~gv~---vI~~~~G~DpAaVaf 211 (340)
T COG0552 139 PFVILFVGVNGVGKT-TT---IAKLAKYLKQQGKSVLLAAGDTFRAAAIEQLEVWGERLGVP---VISGKEGADPAAVAF 211 (340)
T ss_pred cEEEEEEecCCCchH-hH---HHHHHHHHHHCCCeEEEEecchHHHHHHHHHHHHHHHhCCe---EEccCCCCCcHHHHH
Confidence 667666655554422 22 3444445667777777777775 35677777776666 444 5555556
Q ss_pred HHhCC
Q 026909 171 NLLGL 175 (231)
Q Consensus 171 ~~~g~ 175 (231)
++..-
T Consensus 212 DAi~~ 216 (340)
T COG0552 212 DAIQA 216 (340)
T ss_pred HHHHH
Confidence 55433
No 293
>PRK11867 2-oxoglutarate ferredoxin oxidoreductase subunit beta; Reviewed
Probab=23.83 E-value=95 Score=27.12 Aligned_cols=19 Identities=32% Similarity=0.625 Sum_probs=12.5
Q ss_pred CCcchH--HHHHHHHHHHHHh
Q 026909 111 GCPCCW--ELASALKESKARF 129 (231)
Q Consensus 111 ~Cp~C~--~~l~~L~~~~~~l 129 (231)
|||.|- ..+..|.+..+++
T Consensus 19 ~CpGCg~~~il~~l~~al~~l 39 (286)
T PRK11867 19 WCPGCGDGSILAALQRALAEL 39 (286)
T ss_pred cCCCCCCHHHHHHHHHHHHHh
Confidence 999995 4555666555554
No 294
>PF07905 PucR: Purine catabolism regulatory protein-like family; InterPro: IPR012914 This domain is found in the purine catabolism regulatory protein expressed by Bacillus subtilis (PucR, O32138 from SWISSPROT). PucR is thought to be a transcriptional regulator of genes involved in the purine degradation pathway, and may contain a LysR-like DNA-binding domain. It is similar to LysR-type regulators in that it represses its own expression []. The other members of this family are also putative regulatory proteins.
Probab=23.59 E-value=3.1e+02 Score=20.30 Aligned_cols=43 Identities=26% Similarity=0.370 Sum_probs=31.6
Q ss_pred HHHHHHHHhhhcCcEEEEEeCC-----CHHHHHHHHhcCCCCCcceeecCc
Q 026909 121 ALKESKARFDSAGVKLIAVGVG-----TPNKAQILAERLPFPMDCLYADPD 166 (231)
Q Consensus 121 ~L~~~~~~l~~~gv~lv~Is~~-----~~~~~~~~~~~~~fp~~~vl~D~~ 166 (231)
.+.++..++.+.|+.=++|..+ =++.+.+++++.+|| ++.=|.
T Consensus 60 ~~~~~i~~L~~~~~agL~i~~~~~~~~iP~~~i~~A~~~~lP---li~ip~ 107 (123)
T PF07905_consen 60 ELREFIRELAEKGAAGLGIKTGRYLDEIPEEIIELADELGLP---LIEIPW 107 (123)
T ss_pred HHHHHHHHHHHCCCeEEEEeccCccccCCHHHHHHHHHcCCC---EEEeCC
Confidence 4556667777888888888766 357788999999999 665443
No 295
>PLN02640 glucose-6-phosphate 1-dehydrogenase
Probab=23.58 E-value=1.9e+02 Score=28.09 Aligned_cols=70 Identities=10% Similarity=-0.028 Sum_probs=46.5
Q ss_pred CCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHH-hhhcCcEEEEEeCCC
Q 026909 72 VGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKAR-FDSAGVKLIAVGVGT 143 (231)
Q Consensus 72 vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~-l~~~gv~lv~Is~~~ 143 (231)
-|-++-.+.+.|.......-..+.+ +.+..|+.|.+++--.-++-+|+|-.++.. +-..++.||+++..+
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~iVIFGATGDLA~RKL~PALy~L~~~g~Lp~~~~IIG~aR~~ 131 (573)
T PLN02640 61 NGHPLNAVSLQDGENHLTEEHAEKG--ESTLSITVVGASGDLAKKKIFPALFALFYEDWLPENFTVFGYARTK 131 (573)
T ss_pred CCCcccceecccccccccHhhccCC--CCCeEEEEeCCccHhhhhhHHHHHHHHHHcCCCCCCCEEEEEECCC
Confidence 3455555666553322222222222 348999999999998899999999998743 334589999998754
No 296
>TIGR01662 HAD-SF-IIIA HAD-superfamily hydrolase, subfamily IIIA. In the case of histidinol phosphatase and PNK-3'-phosphatase, this model represents a domain of a bifunctional system. In the histidinol phosphatase HisB, a C-terminal domain is an imidazoleglycerol-phosphate dehydratase which catalyzes a related step in histidine biosynthesis. In PNK-3'-phosphatase, N- and C-terminal domains constitute the polynucleotide kinase and DNA-binding components of the enzyme.
Probab=23.56 E-value=1.6e+02 Score=21.62 Aligned_cols=39 Identities=21% Similarity=0.293 Sum_probs=28.6
Q ss_pred HHHHHHHHHHhhhcCcEEEEEeCCC--------HHHHHHHHhcCCCC
Q 026909 119 ASALKESKARFDSAGVKLIAVGVGT--------PNKAQILAERLPFP 157 (231)
Q Consensus 119 l~~L~~~~~~l~~~gv~lv~Is~~~--------~~~~~~~~~~~~fp 157 (231)
.+...+....+++.|+.++.++... .+.+.++.+.++.+
T Consensus 27 ~~~v~~~l~~L~~~g~~l~i~Sn~~~~~~~~~~~~~~~~~l~~~~l~ 73 (132)
T TIGR01662 27 YPEVPDALAELKEAGYKVVIVTNQSGIGRGKFSSGRVARRLEELGVP 73 (132)
T ss_pred CCCHHHHHHHHHHCCCEEEEEECCccccccHHHHHHHHHHHHHCCCC
Confidence 3566677778888999999999876 55666677765554
No 297
>cd03037 GST_N_GRX2 GST_N family, Glutaredoxin 2 (GRX2) subfamily; composed of bacterial proteins similar to E. coli GRX2, an atypical GRX with a molecular mass of about 24kD, compared with other GRXs which are 9-12kD in size. GRX2 adopts a GST fold containing an N-terminal thioredoxin-fold domain and a C-terminal alpha helical domain. It contains a redox active CXXC motif located in the N-terminal domain but is not able to reduce ribonucleotide reductase like other GRXs. However, it catalyzes GSH-dependent protein disulfide reduction of other substrates efficiently. GRX2 is thought to function primarily in catalyzing the reversible glutathionylation of proteins in cellular redox regulation including stress responses.
Probab=23.55 E-value=2.1e+02 Score=18.38 Aligned_cols=17 Identities=18% Similarity=0.241 Sum_probs=11.1
Q ss_pred ecCCCCcchHHHHHHHH
Q 026909 107 LRHFGCPCCWELASALK 123 (231)
Q Consensus 107 ~r~~~Cp~C~~~l~~L~ 123 (231)
|-..+||+|+.-.-.|.
T Consensus 4 y~~~~~p~~~rvr~~L~ 20 (71)
T cd03037 4 YIYEHCPFCVKARMIAG 20 (71)
T ss_pred EecCCCcHhHHHHHHHH
Confidence 33578999986544444
No 298
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=23.33 E-value=2.1e+02 Score=23.39 Aligned_cols=49 Identities=14% Similarity=0.128 Sum_probs=31.5
Q ss_pred EEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCC----HHHHHHHHhcC
Q 026909 102 AVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGT----PNKAQILAERL 154 (231)
Q Consensus 102 ~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~----~~~~~~~~~~~ 154 (231)
-+|+|+-.... | +-..+.+...++++.||.+-.|+.++ .+.++.|.+..
T Consensus 109 rivi~v~S~~~--~--d~~~i~~~~~~lkk~~I~v~vI~~G~~~~~~~~l~~~~~~~ 161 (187)
T cd01452 109 RIVAFVGSPIE--E--DEKDLVKLAKRLKKNNVSVDIINFGEIDDNTEKLTAFIDAV 161 (187)
T ss_pred eEEEEEecCCc--C--CHHHHHHHHHHHHHcCCeEEEEEeCCCCCCHHHHHHHHHHh
Confidence 56667734322 3 23346677778888898877777653 45677777754
No 299
>TIGR00338 serB phosphoserine phosphatase SerB. Phosphoserine phosphatase catalyzes the reaction 3-phospho-serine + H2O = L-serine + phosphate. It catalyzes the last of three steps in the biosynthesis of serine from D-3-phosphoglycerate. Note that this enzyme acts on free phosphoserine, not on phosphoserine residues of phosphoproteins.
Probab=23.11 E-value=1.3e+02 Score=24.17 Aligned_cols=38 Identities=16% Similarity=0.195 Sum_probs=29.0
Q ss_pred HHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 120 ~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
+.+.+..+.+++.|++++.||.+....+..+.+.+++.
T Consensus 88 ~g~~~~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~~i~ 125 (219)
T TIGR00338 88 EGAEELVKTLKEKGYKVAVISGGFDLFAEHVKDKLGLD 125 (219)
T ss_pred CCHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHcCCC
Confidence 44555666677789999999988888888888876665
No 300
>PRK04452 acetyl-CoA decarbonylase/synthase complex subunit delta; Provisional
Probab=22.92 E-value=88 Score=27.92 Aligned_cols=48 Identities=25% Similarity=0.173 Sum_probs=35.8
Q ss_pred HHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHh---cCCCCCcceeecCcch
Q 026909 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADPDRK 168 (231)
Q Consensus 121 ~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~---~~~fp~~~vl~D~~~~ 168 (231)
.+.++.+--++.|..||+.++++.+.+++..+ ++++|.+.|+.||.-.
T Consensus 163 n~~~i~~lA~~y~~~Vva~s~~Dln~ak~L~~~l~~~Gi~~edIviDP~~~ 213 (319)
T PRK04452 163 NYKKIAAAAMAYGHAVIAWSPLDINLAKQLNILLTELGVPRERIVMDPTTG 213 (319)
T ss_pred HHHHHHHHHHHhCCeEEEEcHHHHHHHHHHHHHHHHcCCCHHHEEEeCCcc
Confidence 45556555667789999999888776655544 6899888899998764
No 301
>TIGR01689 EcbF-BcbF capsule biosynthesis phosphatase. Due to the likelihood that the substrates of these enzymes are different depending on the nature of the particular polysaccharides associated with each species, this model has been classified as a subfamily despite the close homology.
Probab=22.82 E-value=2.9e+02 Score=20.95 Aligned_cols=44 Identities=14% Similarity=0.248 Sum_probs=28.0
Q ss_pred HHHHHHHHhhhcCcEEEEEeCCCH---------------HHHHHHHhcCCCCCcceeec
Q 026909 121 ALKESKARFDSAGVKLIAVGVGTP---------------NKAQILAERLPFPMDCLYAD 164 (231)
Q Consensus 121 ~L~~~~~~l~~~gv~lv~Is~~~~---------------~~~~~~~~~~~fp~~~vl~D 164 (231)
...+...++.+.|+.++.++.-+. ....+|.++.++|++.++.-
T Consensus 28 ~~ie~L~~l~~~G~~IiiaTGR~~~~~~~n~~~i~~~~~~~t~~wL~k~~ipYd~l~~~ 86 (126)
T TIGR01689 28 AVIEKLRHYKALGFEIVISSSRNMRTYEGNVGKINIHTLPIIILWLNQHNVPYDEIYVG 86 (126)
T ss_pred HHHHHHHHHHHCCCEEEEECCCCchhhhccccccchhhHHHHHHHHHHcCCCCceEEeC
Confidence 334444555678999888875432 25678888777775546654
No 302
>COG4469 CoiA Competence protein CoiA-like family, contains a predicted nuclease domain [General function prediction only]
Probab=22.27 E-value=43 Score=29.95 Aligned_cols=33 Identities=18% Similarity=0.375 Sum_probs=23.6
Q ss_pred eEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHH
Q 026909 79 FSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWEL 118 (231)
Q Consensus 79 f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~ 118 (231)
++..|.+|+.|++-+.+.+. ++- .++||.|..+
T Consensus 2 ltA~~~ngq~v~ll~~~~k~----~~~---~ffCPaC~~~ 34 (342)
T COG4469 2 LTAKDENGQTVNLLTALQKT----QLQ---RFFCPACGSQ 34 (342)
T ss_pred ceeecCCCCEEEehhhHHHh----hhh---ccccCCCCCe
Confidence 56789999999998776541 211 3689999754
No 303
>PF02966 DIM1: Mitosis protein DIM1; InterPro: IPR004123 Thioredoxins [, , , ] are small disulphide-containing redox proteins that have been found in all the kingdoms of living organisms. Thioredoxin serves as a general protein disulphide oxidoreductase. It interacts with a broad range of proteins by a redox mechanism based on reversible oxidation of 2 cysteine thiol groups to a disulphide, accompanied by the transfer of 2 electrons and 2 protons. The net result is the covalent interconversion of a disulphide and a dithiol. Compared to human thioredoxin, human U5 snRNP-specific protein U5-15kDa contains 37 additional residues that may cause structural changes which most likely form putative binding sites for other spliceosomal proteins or RNA. Although U5-15kDa apparently lacks protein disulphide isomerase activity, it is strictly required for pre-mRNA splicing [].; GO: 0007067 mitosis, 0005681 spliceosomal complex; PDB: 1SYX_E 1PQN_A 1QGV_A 2AV4_A 1XBS_A 3GIX_A.
Probab=22.23 E-value=2.5e+02 Score=21.71 Aligned_cols=44 Identities=14% Similarity=0.150 Sum_probs=32.4
Q ss_pred cEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 101 VAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 101 ~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
++|++-|.+.|-|.|...=.-|.+..++.+.- +.+..|..++..
T Consensus 21 rvvViRFG~d~d~~Cm~mDeiL~~~a~~v~~~-a~IY~vDi~~Vp 64 (133)
T PF02966_consen 21 RVVVIRFGRDWDPVCMQMDEILYKIAEKVKNF-AVIYLVDIDEVP 64 (133)
T ss_dssp SEEEEEEE-TTSHHHHHHHHHHHHHHHHHTTT-EEEEEEETTTTH
T ss_pred eEEEEEeCCCCCccHHHHHHHHHHHHHHhhcc-eEEEEEEcccch
Confidence 89999999999999997777777777776542 446667766544
No 304
>smart00084 NMU Neuromedin U. Neuromedin U (NmU) is a vertebrate peptide which stimulates uterine smooth muscle contraction and causes selective vasoconstriction. Like most other active peptides, it is proteolytically processed from a larger precursor protein. The mature peptides are 8 (NmU-8) to 25 (NmU-25) residues long and C- terminally amidated. The sequence of the C-terminal extremity of NmU is extremely well conserved in mammals, birds and amphibians.
Probab=22.08 E-value=80 Score=17.16 Aligned_cols=13 Identities=15% Similarity=0.187 Sum_probs=11.4
Q ss_pred ccccccEEEEecC
Q 026909 219 CLQREATIICSQR 231 (231)
Q Consensus 219 ~~q~gG~~v~~~~ 231 (231)
..|-.|-|+|+|+
T Consensus 12 ~~qsrgyFLfRPR 24 (26)
T smart00084 12 ASQSRGYFLFRPR 24 (26)
T ss_pred ccccCceEEeccC
Confidence 6899999999986
No 305
>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]
Probab=22.04 E-value=5e+02 Score=24.02 Aligned_cols=98 Identities=10% Similarity=0.094 Sum_probs=55.5
Q ss_pred HHHHHHHHHHHhhhcCcEEEE--EeCCC----H------HHHHHHHhcCCCCCcceeecCcchHHHHhCCcccccceeec
Q 026909 118 LASALKESKARFDSAGVKLIA--VGVGT----P------NKAQILAERLPFPMDCLYADPDRKVYNLLGLYHGVGRTFFN 185 (231)
Q Consensus 118 ~l~~L~~~~~~l~~~gv~lv~--Is~~~----~------~~~~~~~~~~~fp~~~vl~D~~~~~~~~~g~~~g~~~~~~~ 185 (231)
.+..|+++.++-...+|..|. |..++ + ..+.+++++++.| ++.|..+-.=.+|=++..-
T Consensus 170 D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ip---vv~Da~RfaENaYFIk~rE------ 240 (471)
T COG3033 170 DLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIP---VVMDAARFAENAYFIKQRE------ 240 (471)
T ss_pred CHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCc---EEeehhhhhhhhhhhhhcC------
Confidence 467788888887777766443 54443 2 2344555589999 9999877776777775422
Q ss_pred cChh--hHhhHHHHHHHHHhhcccccCCCCCCCCcccccccEEEEe
Q 026909 186 PASA--KVFSRFEALRKAVQNYTIEATPDDRRRDVCLQREATIICS 229 (231)
Q Consensus 186 p~~~--~v~~~~~~l~~~~k~~~~~~~~~~~~Gd~~~q~gG~~v~~ 229 (231)
|.+. .|-+-.+++.....+. .+...+.| ..++||-+-+.
T Consensus 241 ~gYrd~sI~~IarEm~sYaD~~---~mS~KKD~--lvnmGGfl~~~ 281 (471)
T COG3033 241 PGYRDWSIEEIAREMYSYADGC---TMSAKKDG--LVNMGGFLCFK 281 (471)
T ss_pred cccccccHHHHHHHHHhhhhhh---eeeccccc--eeccccEEEec
Confidence 1111 1111112222222221 23455555 78999988664
No 306
>COG1794 RacX Aspartate racemase [Cell envelope biogenesis, outer membrane]
Probab=21.95 E-value=2.2e+02 Score=24.23 Aligned_cols=56 Identities=21% Similarity=0.339 Sum_probs=40.4
Q ss_pred HHHHHHHHHHhhhcCcEEEEEeCCCHHH-HHHHHhcCCCCCcceee--cCcchHHHHhCCcc
Q 026909 119 ASALKESKARFDSAGVKLIAVGVGTPNK-AQILAERLPFPMDCLYA--DPDRKVYNLLGLYH 177 (231)
Q Consensus 119 l~~L~~~~~~l~~~gv~lv~Is~~~~~~-~~~~~~~~~fp~~~vl~--D~~~~~~~~~g~~~ 177 (231)
-+.|.+....+++.|.+++++.+|+... ..+..+..+.| ++. |....-.+.-|+++
T Consensus 61 ~~~L~~~a~~Le~~GAd~i~l~~NT~H~~~d~iq~~~~iP---llhIidaTa~~ik~~g~kk 119 (230)
T COG1794 61 GEILIDAAKKLERAGADFIVLPTNTMHKVADDIQKAVGIP---LLHIIDATAKAIKAAGAKK 119 (230)
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCcHHHHHHHHHHhcCCC---eehHHHHHHHHHHhcCCce
Confidence 3556677788899999999999999765 44444467788 443 66666666767764
No 307
>PLN02424 ketopantoate hydroxymethyltransferase
Probab=21.79 E-value=5.9e+02 Score=22.89 Aligned_cols=58 Identities=19% Similarity=0.218 Sum_probs=42.6
Q ss_pred HHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCCCccee-----ecCcch---HHHHhCCcc
Q 026909 117 ELASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFPMDCLY-----ADPDRK---VYNLLGLYH 177 (231)
Q Consensus 117 ~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl-----~D~~~~---~~~~~g~~~ 177 (231)
....++.+....+++.|+..|.+-+=.....++..+.++.| .+ .+-++. ++..+|+..
T Consensus 179 ~~a~~li~dA~ale~AGAf~ivLE~Vp~~la~~It~~l~IP---tIGIGAG~~cDGQVLV~~D~LG~~~ 244 (332)
T PLN02424 179 ESAVKVVETALALQEAGCFAVVLECVPAPVAAAITSALQIP---TIGIGAGPFCSGQVLVYHDLLGMMQ 244 (332)
T ss_pred HHHHHHHHHHHHHHHcCCcEEEEcCCcHHHHHHHHHhCCCC---EEeecCCCCCCceeEeHHhhcCCCC
Confidence 45778888888999999988887766666888888888888 43 223333 377888864
No 308
>PLN02954 phosphoserine phosphatase
Probab=21.03 E-value=1.7e+02 Score=23.69 Aligned_cols=38 Identities=18% Similarity=0.238 Sum_probs=30.0
Q ss_pred HHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 120 ~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
|.+.+..+.+++.|+.++.|+.+....++...+.++++
T Consensus 87 pg~~e~l~~l~~~g~~~~IvS~~~~~~i~~~l~~~gi~ 124 (224)
T PLN02954 87 PGIPELVKKLRARGTDVYLVSGGFRQMIAPVAAILGIP 124 (224)
T ss_pred ccHHHHHHHHHHCCCEEEEECCCcHHHHHHHHHHhCCC
Confidence 56666777778889999999988888888888876664
No 309
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=21.01 E-value=1.3e+02 Score=27.54 Aligned_cols=47 Identities=11% Similarity=0.072 Sum_probs=33.7
Q ss_pred HHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHh---cCCCCCcceeecCcc
Q 026909 121 ALKESKARFDSAGVKLIAVGVGTPNKAQILAE---RLPFPMDCLYADPDR 167 (231)
Q Consensus 121 ~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~---~~~fp~~~vl~D~~~ 167 (231)
.+.++....++.|+.|++-+.++...++.... +++++.+.|+.||.-
T Consensus 228 Ny~~ia~lAk~yg~~Vvv~s~~Din~ak~Ln~kL~~~Gv~~eDIVlDP~t 277 (389)
T TIGR00381 228 DYEKIANAAKKYGHVVLSWTIMDINMQKTLNRYLLKRGLMPRDIVMDPTT 277 (389)
T ss_pred hHHHHHHHHHHhCCeEEEEcCCcHHHHHHHHHHHHHcCCCHHHEEEcCCC
Confidence 55566666667788888888788776666644 578886668888876
No 310
>TIGR01491 HAD-SF-IB-PSPlk HAD-superfamily, subfamily-IB PSPase-like hydrolase, archaeal. This hypothetical equivalog is a member of the IB subfamily (TIGR01488) of the haloacid dehalogenase (HAD) superfamily of aspartate-nucleophile hydrolases. The sequences modelled by this alignment are all from archaeal species. The phylogenetically closest group of sequences to these are phosphoserine phosphatases (TIGR00338). There are no known archaeal phosphoserine phosphatases, and no archaea fall within TIGR00338. It is likely, then, that This model represents the archaeal branch of the PSPase equivalog.
Probab=20.94 E-value=2.2e+02 Score=22.31 Aligned_cols=38 Identities=24% Similarity=0.160 Sum_probs=28.8
Q ss_pred HHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 120 ~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
+...+....+++.|+.++.||.+....++.+.+.+++.
T Consensus 83 ~g~~e~l~~l~~~g~~~~IvS~~~~~~~~~~l~~~g~~ 120 (201)
T TIGR01491 83 DYAEELVRWLKEKGLKTAIVSGGIMCLAKKVAEKLNPD 120 (201)
T ss_pred ccHHHHHHHHHHCCCEEEEEeCCcHHHHHHHHHHhCCC
Confidence 45566667778889999999988877777777765543
No 311
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=20.73 E-value=1.3e+02 Score=24.34 Aligned_cols=24 Identities=33% Similarity=0.620 Sum_probs=18.6
Q ss_pred HHHHHHHhhhcCcEEEEEeCCCHH
Q 026909 122 LKESKARFDSAGVKLIAVGVGTPN 145 (231)
Q Consensus 122 L~~~~~~l~~~gv~lv~Is~~~~~ 145 (231)
+.+...++++.||++++|+.++..
T Consensus 128 ~~~~a~~lk~~gV~i~~vGiG~~~ 151 (192)
T cd01473 128 LQDISLLYKEENVKLLVVGVGAAS 151 (192)
T ss_pred HHHHHHHHHHCCCEEEEEEecccc
Confidence 455566788999999999988653
No 312
>COG0560 SerB Phosphoserine phosphatase [Amino acid transport and metabolism]
Probab=20.72 E-value=1.6e+02 Score=24.38 Aligned_cols=39 Identities=26% Similarity=0.326 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 119 ASALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 119 l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
.|...++...+++.|.+++.||-+-..-++..++.+++.
T Consensus 79 ~~ga~elv~~lk~~G~~v~iiSgg~~~lv~~ia~~lg~d 117 (212)
T COG0560 79 TPGAEELVAALKAAGAKVVIISGGFTFLVEPIAERLGID 117 (212)
T ss_pred CccHHHHHHHHHHCCCEEEEEcCChHHHHHHHHHHhCCc
Confidence 455666677788999999999988888888888876655
No 313
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=20.71 E-value=2.3e+02 Score=20.19 Aligned_cols=32 Identities=28% Similarity=0.557 Sum_probs=27.2
Q ss_pred cCcEEEEEeCCCHHHHHHHHhcCCCCCcceeecCc
Q 026909 132 AGVKLIAVGVGTPNKAQILAERLPFPMDCLYADPD 166 (231)
Q Consensus 132 ~gv~lv~Is~~~~~~~~~~~~~~~fp~~~vl~D~~ 166 (231)
.++++++|...+++..+++.+.++++ .|.|.+
T Consensus 24 ~~~~v~~v~d~~~~~~~~~~~~~~~~---~~~~~~ 55 (120)
T PF01408_consen 24 PDFEVVAVCDPDPERAEAFAEKYGIP---VYTDLE 55 (120)
T ss_dssp TTEEEEEEECSSHHHHHHHHHHTTSE---EESSHH
T ss_pred CCcEEEEEEeCCHHHHHHHHHHhccc---chhHHH
Confidence 46799999988999999999999999 787744
No 314
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=20.62 E-value=2.9e+02 Score=25.96 Aligned_cols=66 Identities=18% Similarity=0.134 Sum_probs=47.5
Q ss_pred CCCCcCCeEEECCCCCeEeccccccCCCCcEEEEEecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCC
Q 026909 72 VGDLLGDFSIFTAAGEPVLFKDLWDQNEGVAVVALLRHFGCPCCWELASALKESKARFDSAGVKLIAVGVG 142 (231)
Q Consensus 72 vG~~ap~f~l~d~~G~~v~l~dl~~~~~g~~vL~f~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~ 142 (231)
.++.+....+.-.+|+.|++.+|++.. ++|| .. ++. -.|.+-+.....+.++|.+.||-||-|-.+
T Consensus 272 Ree~L~rL~v~l~~~~~v~l~~LRg~~--RvvI-vA-G~~-e~v~~al~~ae~~r~~L~~r~VlvVPv~~~ 337 (453)
T PLN03098 272 RDETLSRLPVRLSTNRIVELVQLRDIT--RPVI-LA-GTK-ESVTLAMQKAERYRTELLKRGVLLIPVVWG 337 (453)
T ss_pred hhhhhccceEeccCCCEEeHHHhcCcc--eEEE-EE-CCH-HHHHHHHHHhHHHHHHHHHcCcEEEEEecC
Confidence 345555555555568899999998862 3333 22 322 567888888999999999999999988765
No 315
>PF13743 Thioredoxin_5: Thioredoxin; PDB: 3KZQ_C.
Probab=20.56 E-value=66 Score=25.72 Aligned_cols=43 Identities=14% Similarity=0.357 Sum_probs=25.1
Q ss_pred ecCCCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHH
Q 026909 107 LRHFGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQIL 150 (231)
Q Consensus 107 ~r~~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~ 150 (231)
|--+.|+.|...-+.+.++..++... +.+-.|..+....+..+
T Consensus 3 F~dPlc~~C~~~E~~l~kl~~~~~~~-i~~~~i~~~~~~~~~~~ 45 (176)
T PF13743_consen 3 FVDPLCSWCWGFEPELRKLKEEYGNK-IEFRFIPGGLMPDINDF 45 (176)
T ss_dssp EE-TT-HHHHHHHHHHHHHHHHS-TT-EEEEEEE--SS-S--SB
T ss_pred eeCCCChHHHHhHHHHHHHHHHcCCc-EEEEEEEccchHHHHHH
Confidence 44789999999999999999988653 55555544443333333
No 316
>TIGR01484 HAD-SF-IIB HAD-superfamily hydrolase, subfamily IIB. The IIB subfamily consists of Trehalose-6-phosphatase (TIGR00685), plant and cyanobacterial Sucrose-phosphatase and a closely related group of bacterial and archaeal sequences, eukaryotic phosphomannomutase (pfam03332), a large subfamily ("Cof-like hydrolases", TIGR00099) containing many closely related bacterial sequences, a hypothetical equivalog containing the E. coli YedP protein, as well as two small clusters containing sequences whose relationship to the other groups is unclear.
Probab=20.43 E-value=2e+02 Score=22.88 Aligned_cols=38 Identities=29% Similarity=0.425 Sum_probs=26.8
Q ss_pred HHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhcCCCC
Q 026909 120 SALKESKARFDSAGVKLIAVGVGTPNKAQILAERLPFP 157 (231)
Q Consensus 120 ~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~~~fp 157 (231)
+...+...++.+.|+.++.++..+...+..+.+.++.+
T Consensus 20 ~~~~~~l~~l~~~g~~~~i~TGR~~~~~~~~~~~~~~~ 57 (204)
T TIGR01484 20 PETIEALERLREAGVKVVLVTGRSLAEIKELLKQLPLP 57 (204)
T ss_pred HHHHHHHHHHHHCCCEEEEECCCCHHHHHHHHHhCCCC
Confidence 45556666677888888888877887777777654433
No 317
>cd03061 GST_N_CLIC GST_N family, Chloride Intracellular Channel (CLIC) subfamily; composed of CLIC1-5, p64, parchorin and similar proteins. They are auto-inserting, self-assembling intracellular anion channels involved in a wide variety of functions including regulated secretion, cell division and apoptosis. They can exist in both water-soluble and membrane-bound states, and are found in various vesicles and membranes. Biochemical studies of the C. elegans homolog, EXC-4, show that the membrane localization domain is present in the N-terminal part of the protein. The structure of soluble human CLIC1 reveals that it is monomeric and it adopts a fold similar to GSTs, containing an N-terminal domain with a TRX fold and a C-terminal alpha helical domain. Upon oxidation, the N-terminal domain of CLIC1 undergoes a structural change to form a non-covalent dimer stabilized by the formation of an intramolecular disulfide bond between two cysteines that are far apart in the reduced form. The CLI
Probab=20.39 E-value=1.3e+02 Score=21.51 Aligned_cols=50 Identities=16% Similarity=0.146 Sum_probs=29.0
Q ss_pred CCCcchHHHHHHHHHHHHHhhhcCcEEEEEeCCCHHHHHHHHhc---CCCCCcceeecCcchH
Q 026909 110 FGCPCCWELASALKESKARFDSAGVKLIAVGVGTPNKAQILAER---LPFPMDCLYADPDRKV 169 (231)
Q Consensus 110 ~~Cp~C~~~l~~L~~~~~~l~~~gv~lv~Is~~~~~~~~~~~~~---~~fp~~~vl~D~~~~~ 169 (231)
-.||+|+...-.|.+. ...++++-|..++.. ..|.+. -..| ++.|.+..+
T Consensus 20 g~cpf~~rvrl~L~eK-----gi~ye~~~vd~~~~p--~~~~~~nP~g~vP---vL~~~~~~i 72 (91)
T cd03061 20 GNCPFCQRLFMVLWLK-----GVVFNVTTVDMKRKP--EDLKDLAPGTQPP---FLLYNGEVK 72 (91)
T ss_pred CCChhHHHHHHHHHHC-----CCceEEEEeCCCCCC--HHHHHhCCCCCCC---EEEECCEEe
Confidence 4799999876666543 223445666655422 346662 3367 788755444
Done!