Query 026910
Match_columns 231
No_of_seqs 131 out of 1195
Neff 8.6
Searched_HMMs 46136
Date Fri Mar 29 14:25:28 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026910.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026910hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1444 Nucleotide-sugar trans 100.0 5.1E-33 1.1E-37 232.6 20.6 218 2-220 1-220 (314)
2 TIGR00817 tpt Tpt phosphate/ph 100.0 1.4E-28 3.1E-33 211.2 26.0 199 14-212 3-201 (302)
3 PTZ00343 triose or hexose phos 100.0 8.2E-28 1.8E-32 210.4 26.6 198 11-208 47-251 (350)
4 KOG1441 Glucose-6-phosphate/ph 100.0 4.8E-30 1E-34 218.5 11.5 203 6-208 10-218 (316)
5 PF08449 UAA: UAA transporter 99.9 3.4E-23 7.4E-28 178.1 22.2 207 18-226 6-226 (303)
6 COG5070 VRG4 Nucleotide-sugar 99.9 5.2E-24 1.1E-28 169.7 11.4 195 16-214 9-213 (309)
7 KOG1443 Predicted integral mem 99.9 1.7E-23 3.7E-28 173.7 13.4 197 13-209 16-220 (349)
8 KOG1442 GDP-fucose transporter 99.9 1.8E-23 3.9E-28 171.1 5.5 203 16-218 31-247 (347)
9 KOG1580 UDP-galactose transpor 99.8 1.5E-20 3.2E-25 151.2 9.2 183 41-225 52-241 (337)
10 KOG1581 UDP-galactose transpor 99.8 5E-17 1.1E-21 135.3 22.8 207 16-224 12-240 (327)
11 TIGR00950 2A78 Carboxylate/Ami 99.7 1.4E-14 3E-19 121.4 20.9 176 30-211 6-183 (260)
12 KOG1582 UDP-galactose transpor 99.6 2.2E-15 4.7E-20 123.8 11.9 189 32-223 62-257 (367)
13 PRK11272 putative DMT superfam 99.6 2.8E-13 6.2E-18 115.9 24.0 187 13-210 12-201 (292)
14 PRK11689 aromatic amino acid e 99.6 1.7E-13 3.6E-18 117.5 22.0 170 8-189 3-187 (295)
15 PF06027 DUF914: Eukaryotic pr 99.6 2.4E-13 5.3E-18 117.6 20.8 142 73-217 76-226 (334)
16 PRK15430 putative chlorampheni 99.6 5.9E-13 1.3E-17 114.1 21.3 183 8-200 7-193 (296)
17 TIGR00688 rarD rarD protein. T 99.6 5.7E-13 1.2E-17 111.8 20.6 161 10-180 3-170 (256)
18 PRK11453 O-acetylserine/cystei 99.6 2.8E-12 6.1E-17 110.1 23.9 185 11-208 6-196 (299)
19 PLN00411 nodulin MtN21 family 99.6 2.4E-12 5.3E-17 113.0 23.8 184 23-208 23-240 (358)
20 PF04142 Nuc_sug_transp: Nucle 99.5 2.8E-13 6.1E-18 112.9 14.9 136 73-208 14-166 (244)
21 PRK10532 threonine and homoser 99.5 1.4E-11 3E-16 105.5 23.2 181 12-209 15-198 (293)
22 KOG1583 UDP-N-acetylglucosamin 99.5 1.5E-13 3.3E-18 113.2 8.1 205 13-226 5-231 (330)
23 COG0697 RhaT Permeases of the 99.3 2E-09 4.2E-14 90.8 24.5 170 14-191 12-186 (292)
24 TIGR03340 phn_DUF6 phosphonate 99.3 1.5E-09 3.2E-14 92.4 21.3 159 14-179 6-167 (281)
25 KOG2234 Predicted UDP-galactos 99.2 4.3E-09 9.3E-14 90.2 21.8 201 13-214 15-240 (345)
26 PF00892 EamA: EamA-like trans 99.2 4.2E-10 9.1E-15 83.2 10.9 117 29-147 7-125 (126)
27 KOG2765 Predicted membrane pro 99.1 1.6E-09 3.5E-14 93.1 14.1 127 82-208 165-301 (416)
28 KOG3912 Predicted integral mem 99.1 1.4E-08 3E-13 84.4 17.0 129 77-205 87-225 (372)
29 TIGR00776 RhaT RhaT L-rhamnose 98.9 1.2E-07 2.6E-12 81.2 18.1 169 12-195 4-187 (290)
30 PF13536 EmrE: Multidrug resis 98.9 1.2E-08 2.6E-13 75.1 9.6 78 74-152 32-110 (113)
31 COG2510 Predicted membrane pro 98.9 4.2E-08 9.2E-13 72.4 10.4 132 12-148 6-139 (140)
32 COG2962 RarD Predicted permeas 98.7 3.4E-06 7.4E-11 70.8 19.6 193 5-213 3-201 (293)
33 TIGR00950 2A78 Carboxylate/Ami 98.7 3.5E-06 7.7E-11 70.4 17.9 127 12-143 131-259 (260)
34 COG5006 rhtA Threonine/homoser 98.6 1.4E-05 3.1E-10 65.8 18.6 164 32-207 31-197 (292)
35 KOG4510 Permease of the drug/m 98.5 5.1E-08 1.1E-12 80.6 3.1 188 16-211 42-244 (346)
36 KOG4314 Predicted carbohydrate 98.4 1.8E-06 3.8E-11 68.7 7.9 110 76-185 53-164 (290)
37 PRK15051 4-amino-4-deoxy-L-ara 98.3 7E-06 1.5E-10 60.2 10.2 65 84-148 45-109 (111)
38 PLN00411 nodulin MtN21 family 98.3 3.7E-05 8.1E-10 67.8 16.1 131 13-148 193-328 (358)
39 PRK11272 putative DMT superfam 98.3 7.1E-05 1.5E-09 64.0 16.9 134 12-151 153-288 (292)
40 PRK10532 threonine and homoser 98.2 0.00034 7.3E-09 59.9 18.1 130 12-148 151-281 (293)
41 PF03151 TPT: Triose-phosphate 98.1 9.7E-06 2.1E-10 62.3 7.6 59 157-215 1-64 (153)
42 PRK11689 aromatic amino acid e 98.1 0.00029 6.2E-09 60.4 16.4 129 12-148 159-287 (295)
43 PRK11453 O-acetylserine/cystei 98.1 0.00053 1.2E-08 58.8 17.8 133 13-149 147-288 (299)
44 TIGR03340 phn_DUF6 phosphonate 98.0 5.9E-05 1.3E-09 64.1 10.8 67 79-145 214-280 (281)
45 PF03151 TPT: Triose-phosphate 98.0 0.0005 1.1E-08 52.7 15.0 74 74-147 79-152 (153)
46 TIGR00803 nst UDP-galactose tr 98.0 2.3E-05 5.1E-10 64.3 7.5 100 100-204 2-128 (222)
47 TIGR00817 tpt Tpt phosphate/ph 98.0 0.00014 3.1E-09 62.3 12.6 134 14-148 146-293 (302)
48 TIGR00776 RhaT RhaT L-rhamnose 98.0 0.00032 6.9E-09 60.1 14.3 128 13-148 152-288 (290)
49 PRK02971 4-amino-4-deoxy-L-ara 97.9 0.00032 6.8E-09 52.8 11.1 70 80-149 51-123 (129)
50 PRK15430 putative chlorampheni 97.8 0.0014 3.1E-08 56.1 16.1 68 79-146 216-283 (296)
51 PRK10452 multidrug efflux syst 97.7 0.00046 9.9E-09 51.2 8.8 71 79-149 33-104 (120)
52 PTZ00343 triose or hexose phos 97.6 0.0032 7E-08 55.4 15.4 135 13-147 194-347 (350)
53 COG0697 RhaT Permeases of the 97.6 0.0083 1.8E-07 50.2 17.2 130 12-149 157-288 (292)
54 PRK11431 multidrug efflux syst 97.6 0.0018 3.8E-08 47.0 10.9 70 79-148 32-102 (105)
55 PRK09541 emrE multidrug efflux 97.5 0.0019 4E-08 47.3 10.5 70 80-149 34-104 (110)
56 KOG2766 Predicted membrane pro 97.5 6.1E-06 1.3E-10 68.1 -3.5 128 75-204 77-212 (336)
57 PRK10650 multidrug efflux syst 97.5 0.003 6.6E-08 46.0 10.9 68 79-146 38-106 (109)
58 COG2076 EmrE Membrane transpor 97.4 0.002 4.4E-08 46.5 9.5 72 78-149 32-104 (106)
59 PF06027 DUF914: Eukaryotic pr 97.4 0.0045 9.8E-08 54.0 13.0 134 10-150 169-307 (334)
60 PF08449 UAA: UAA transporter 97.3 0.015 3.2E-07 50.1 14.7 135 14-148 155-297 (303)
61 PF06800 Sugar_transport: Suga 97.2 0.018 3.9E-07 48.6 14.3 134 69-206 36-184 (269)
62 PF00893 Multi_Drug_Res: Small 96.8 0.011 2.4E-07 41.8 8.2 58 82-139 35-93 (93)
63 PF06800 Sugar_transport: Suga 96.5 0.11 2.3E-06 44.0 13.5 72 74-145 193-268 (269)
64 COG5006 rhtA Threonine/homoser 96.2 0.37 7.9E-06 40.3 14.2 129 14-144 149-278 (292)
65 TIGR00803 nst UDP-galactose tr 95.6 0.23 4.9E-06 40.6 10.9 64 82-145 158-221 (222)
66 PF10639 UPF0546: Uncharacteri 95.3 0.069 1.5E-06 39.1 6.1 69 77-146 43-112 (113)
67 PF05653 Mg_trans_NIPA: Magnes 94.7 0.087 1.9E-06 45.4 6.3 64 84-147 58-121 (300)
68 PRK13499 rhamnose-proton sympo 93.7 4.6 0.0001 35.5 16.2 105 70-174 67-192 (345)
69 KOG1441 Glucose-6-phosphate/ph 93.4 0.47 1E-05 41.1 8.2 138 10-148 160-307 (316)
70 COG2962 RarD Predicted permeas 93.4 4.5 9.8E-05 34.5 14.7 75 75-149 210-284 (293)
71 PF04142 Nuc_sug_transp: Nucle 92.4 5.7 0.00012 33.1 13.1 128 10-137 111-242 (244)
72 PF04657 DUF606: Protein of un 91.9 4.4 9.5E-05 30.7 14.3 123 19-145 7-138 (138)
73 COG5070 VRG4 Nucleotide-sugar 90.8 2.4 5.1E-05 35.0 8.7 131 15-145 157-293 (309)
74 KOG2765 Predicted membrane pro 90.0 5.1 0.00011 35.5 10.6 136 12-151 250-393 (416)
75 PRK13499 rhamnose-proton sympo 88.4 17 0.00037 32.0 14.9 70 80-150 264-343 (345)
76 TIGR00688 rarD rarD protein. T 86.7 17 0.00036 30.1 13.3 50 74-123 206-255 (256)
77 KOG1444 Nucleotide-sugar trans 86.2 6.6 0.00014 33.9 8.8 135 14-148 158-300 (314)
78 KOG2922 Uncharacterized conser 85.1 3.5 7.5E-05 35.7 6.6 62 84-145 72-133 (335)
79 KOG4510 Permease of the drug/m 84.4 2.3 5.1E-05 36.0 5.2 71 75-145 252-322 (346)
80 COG2510 Predicted membrane pro 83.3 6.5 0.00014 29.5 6.6 56 158-215 5-60 (140)
81 PF06379 RhaT: L-rhamnose-prot 79.7 40 0.00086 29.6 11.1 162 12-177 6-194 (344)
82 KOG1581 UDP-galactose transpor 76.1 43 0.00092 29.0 10.1 74 71-145 236-310 (327)
83 KOG2234 Predicted UDP-galactos 75.5 57 0.0012 28.7 14.9 140 8-147 178-321 (345)
84 PF03613 EIID-AGA: PTS system 72.6 58 0.0013 27.6 10.5 57 79-135 180-249 (264)
85 COG4975 GlcU Putative glucose 71.6 3.4 7.4E-05 34.6 2.5 74 74-147 207-284 (288)
86 PF00892 EamA: EamA-like trans 69.3 5.1 0.00011 28.5 2.8 42 167-211 2-43 (126)
87 COG4975 GlcU Putative glucose 64.3 1 2.2E-05 37.6 -1.9 178 12-207 5-199 (288)
88 KOG1580 UDP-galactose transpor 63.0 15 0.00032 30.8 4.5 35 111-145 276-310 (337)
89 COG4682 Predicted membrane pro 53.8 64 0.0014 23.9 6.0 83 126-209 6-93 (128)
90 PRK11383 hypothetical protein; 47.6 1.2E+02 0.0027 23.0 8.4 78 126-205 6-89 (145)
91 PF05297 Herpes_LMP1: Herpesvi 46.3 6.6 0.00014 33.5 0.0 101 107-208 54-159 (381)
92 COG3238 Uncharacterized protei 43.0 1.5E+02 0.0033 22.8 13.7 131 15-146 7-144 (150)
93 PF04657 DUF606: Protein of un 42.7 1E+02 0.0022 23.2 6.0 53 158-211 3-55 (138)
94 PRK11403 hypothetical protein; 42.6 1.3E+02 0.0029 21.9 8.3 76 132-208 5-84 (113)
95 TIGR03144 cytochr_II_ccsB cyto 35.7 2.5E+02 0.0055 23.1 12.7 56 155-210 101-170 (243)
96 KOG4831 Unnamed protein [Funct 33.2 63 0.0014 23.4 3.3 68 78-146 55-123 (125)
97 KOG1583 UDP-N-acetylglucosamin 32.6 1.6E+02 0.0036 25.3 6.1 130 14-148 165-314 (330)
98 COG3274 Predicted O-acyltransf 31.6 3E+02 0.0065 24.1 7.7 27 104-130 46-72 (332)
99 COG1575 MenA 1,4-dihydroxy-2-n 29.7 1.2E+02 0.0026 26.2 5.0 49 131-179 19-67 (303)
100 PF07578 LAB_N: Lipid A Biosyn 27.9 1.9E+02 0.0041 19.3 6.0 43 171-216 16-58 (72)
101 PF09930 DUF2162: Predicted tr 25.5 3.9E+02 0.0084 22.1 13.2 98 47-145 69-174 (224)
102 PF06946 Phage_holin_5: Phage 25.3 2.5E+02 0.0054 19.8 6.7 54 125-178 27-85 (93)
103 COG2155 Uncharacterized conser 25.1 1.6E+02 0.0034 20.1 3.9 44 130-173 5-49 (79)
104 COG3296 Uncharacterized protei 23.6 2.4E+02 0.0052 21.2 5.0 27 134-160 75-101 (143)
105 COG3274 Predicted O-acyltransf 23.2 5.2E+02 0.011 22.7 8.2 61 87-147 157-219 (332)
106 PF06379 RhaT: L-rhamnose-prot 23.1 2.4E+02 0.0053 24.8 5.8 67 155-225 6-72 (344)
107 KOG1443 Predicted integral mem 23.0 4.5E+02 0.0097 23.1 7.2 69 78-146 245-313 (349)
108 PF03812 KdgT: 2-keto-3-deoxyg 22.6 5.2E+02 0.011 22.5 8.3 78 102-179 140-248 (314)
109 PRK07668 hypothetical protein; 22.2 4.8E+02 0.01 22.0 9.0 7 30-36 127-133 (254)
110 PRK02237 hypothetical protein; 22.1 2.7E+02 0.0059 20.2 4.9 45 105-149 62-106 (109)
111 COG3162 Predicted membrane pro 21.3 3.1E+02 0.0067 19.6 4.9 48 15-62 30-83 (102)
112 PRK00259 intracellular septati 21.0 4.3E+02 0.0092 20.9 14.3 68 75-152 3-72 (179)
113 PF01066 CDP-OH_P_transf: CDP- 20.5 3E+02 0.0065 19.0 5.3 53 127-181 4-56 (101)
No 1
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=5.1e-33 Score=232.55 Aligned_cols=218 Identities=36% Similarity=0.522 Sum_probs=204.8
Q ss_pred CCccccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH--HHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHH
Q 026910 2 ETSTDAEISPFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLT--LQQLATALLIQAGRQMGYTKSKAIDLMTAKKL 79 (231)
Q Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~--~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 79 (231)
|.++|.++-....+.+++.|+.+|+.+++.||+++++|+||+.+.. .|...+.+.+++.++.|..+.++++++..|++
T Consensus 1 ~~~~~~~~~~~~~l~sa~~Y~~sS~lm~vvNK~vls~y~f~~~l~l~~~Q~l~s~~~v~~lk~~~lv~~~~l~~~~~kk~ 80 (314)
T KOG1444|consen 1 MRSDEGSKKQSSPLLSALFYCLSSILMTVVNKIVLSSYNFPMGLLLMLLQSLASVLVVLVLKRLGLVNFRPLDLRTAKKW 80 (314)
T ss_pred CCccccchhhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHhceeecCCcChHHHHHH
Confidence 4556666666677899999999999999999999999999987554 99999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecccccchHHHH
Q 026910 80 LPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYS 159 (231)
Q Consensus 80 ~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~~~~~~G~~ 159 (231)
+|++++|.++++++..+++|+++|+++++|+.+|+.+++.+..++|.++++..+.++..+.+|.......|.++|..|+.
T Consensus 81 ~P~~~lf~~~i~t~~~slk~lnVpm~tv~kn~tii~~ai~E~lf~~~~~~~~v~~Sv~~m~~~s~~~~~~d~sf~~~gY~ 160 (314)
T KOG1444|consen 81 FPVSLLFVGMLFTGSKSLKYLNVPMFTVFKNLTIILTAIGEVLFFGKRPSNKVWASVFAMIIGSVAAAFTDLSFNLRGYS 160 (314)
T ss_pred ccHHHHHHHHHHHccccccccCchHHHHHhhchHHHHHHhHHhhcCcCchhhHHHHHHHHHHHHHhhccccceecchhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCChHHHHHHhhh
Q 026910 160 MALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFS 220 (231)
Q Consensus 160 ~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~~~~~~~~~ 220 (231)
|++.++++.+.+.++.|+..+..+.+.+++++|+++++.+.+....+++||++ .+++-.+
T Consensus 161 w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~-~l~~~~~ 220 (314)
T KOG1444|consen 161 WALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELD-ALSLNFD 220 (314)
T ss_pred HHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchH-HHHhhcc
Confidence 99999999999999999999988999999999999999999999999999999 5544433
No 2
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=99.97 E-value=1.4e-28 Score=211.18 Aligned_cols=199 Identities=19% Similarity=0.166 Sum_probs=180.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 026910 14 GLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFA 93 (231)
Q Consensus 14 ~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (231)
-...++.|+++|+..+++||++++++++|..+++.|+.++.+...+....+..+.+++++++++++++.|++++.+..++
T Consensus 3 ~~~~~~~w~~~~~~~~~~NK~~l~~~~~P~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~ 82 (302)
T TIGR00817 3 TGLLFGLWYFLNVYFNIYNKKLLNVFPYPYFKTLISLAVGSLYCLLSWSSGLPKRLKISSALLKLLLPVAIVHTIGHVTS 82 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 35678899999999999999999998999999999999998877766544444556788899999999999999999999
Q ss_pred HHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecccccchHHHHHHHHHHHHHHHHHH
Q 026910 94 LASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLV 173 (231)
Q Consensus 94 n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v 173 (231)
|.|++|+++++++++|+++|+++++++++++|||++++++++++++++|+++.+.+|.+++..|+++++++++++++|.+
T Consensus 83 ~~~l~~~s~s~~~li~~~~Pv~~~ll~~~~~~e~~~~~~~~~l~l~~~Gv~l~~~~~~~~~~~G~~~~l~a~~~~a~~~v 162 (302)
T TIGR00817 83 NVSLSKVAVSFTHTIKAMEPFFSVVLSAFFLGQEFPSTLWLSLLPIVGGVALASDTELSFNWAGFLSAMISNITFVSRNI 162 (302)
T ss_pred HHHHHhccHHHHHHHHhcchHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHhhhcCCcccccHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999988777778888899999999999999999
Q ss_pred HHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCChH
Q 026910 174 LVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFP 212 (231)
Q Consensus 174 ~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~ 212 (231)
+.||..++.++|+.+++.|+++.+.+.++|.+...++.+
T Consensus 163 ~~k~~~~~~~~~~~~~~~~~~~~~~~~l~p~~~~~~~~~ 201 (302)
T TIGR00817 163 FSKKAMTIKSLDKTNLYAYISIMSLFLLSPPAFITEGPP 201 (302)
T ss_pred HHHHhhccCCCCcccHHHHHHHHHHHHHHHHHHHHcchH
Confidence 999987655789999999999999999999988876544
No 3
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=99.97 E-value=8.2e-28 Score=210.44 Aligned_cols=198 Identities=16% Similarity=0.130 Sum_probs=177.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC--HHHHHHHHHHHHHHHH
Q 026910 11 PFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAID--LMTAKKLLPVSLFYNA 88 (231)
Q Consensus 11 ~~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 88 (231)
.+.....++.|+.+|+..++.||++++++++|.+++++|++++++.+.+....+..+.+|++ ++++++++|+|+++..
T Consensus 47 ~~~~~~~~~~wy~~s~~~~~~nK~vl~~~~~P~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~llp~gl~~~~ 126 (350)
T PTZ00343 47 KWKLALLFLTWYALNVLYVVDNKLALNMLPLPWTISSLQLFVGWLFALLYWATGFRKIPRIKSLKLFLKNFLPQGLCHLF 126 (350)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 46677889999999999999999999999999999999999998776655554443445553 3578999999999988
Q ss_pred HHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecccccchHHHHHHHHHHHHH
Q 026910 89 NVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQ 168 (231)
Q Consensus 89 ~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~ 168 (231)
.....|.|++++++++++++|++.|+++++++++++|||++++++++++++++|+++++.+|.++++.|++++++|++++
T Consensus 127 ~~~~~~~sl~~~svs~~~iika~~Pvft~lls~~~l~ek~s~~~~l~l~l~v~Gv~l~~~~~~~~~~~G~~~~l~s~~~~ 206 (350)
T PTZ00343 127 VHFGAVISMGLGAVSFTHVVKAAEPVFTALLSILFLKQFLNLYAYLSLIPIVGGVALASVKELHFTWLAFWCAMLSNLGS 206 (350)
T ss_pred HHHHHHHHHhhccHHHHHHHHHhhHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHheecccchhHHHHHHHHHHHHHHH
Confidence 88888999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhcCCC-----CCChhHHHHHHhhhHHHHHHHHHHHh
Q 026910 169 TMYLVLVEKSGAED-----GLSSVEIMFYNSFLSLPFLVFLIIVT 208 (231)
Q Consensus 169 a~~~v~~~~~~~~~-----~~~~~~~~~y~~~~~~~~l~~~~~~~ 208 (231)
|+|+++.|+.+++. ++++.+...|..+.+.++++|..+..
T Consensus 207 a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~ 251 (350)
T PTZ00343 207 SLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFF 251 (350)
T ss_pred HHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999988653 46788888888999999999998866
No 4
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=99.96 E-value=4.8e-30 Score=218.52 Aligned_cols=203 Identities=22% Similarity=0.287 Sum_probs=185.4
Q ss_pred ccCCchhHHHHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCH-HHHHHHHHH
Q 026910 6 DAEISPFLGLFAALSYGVSSMAMVFINKAVIM--QYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDL-MTAKKLLPV 82 (231)
Q Consensus 6 ~~~~~~~~~~~~~~~~~~~s~~~~~~nK~ll~--~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 82 (231)
++++...........|.++++..++.||++++ ++++|.+++.+|..++.+...+.+..|..+.++.+. ..++.++|+
T Consensus 10 ~~~~~~~~~~~~~~~w~~~~v~~~~~nK~il~~~~f~~p~~lt~~~~~~~~l~~~v~~~l~~~~~~~~~~~~~~~~llpl 89 (316)
T KOG1441|consen 10 GQLKKILRIGIAFAIWYVLSVGVIILNKYILSKYGFPFPITLTMLHLFCGALALLVIKVLKLVPPSKISSKLPLRTLLPL 89 (316)
T ss_pred cccchhHHHHHHHHHHhhhheeeEEeeHhhhccCCCCCccHHHHHHHHHHHHHHHHHHHhcCCCCCccccccchHHHHHH
Confidence 33344455667789999999999999999999 778889999999999999999999988877666544 578999999
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecccccchHHHHHHH
Q 026910 83 SLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMAL 162 (231)
Q Consensus 83 ~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~~~~~~G~~~~l 162 (231)
|++++.+.+++|.|++|+||+++|++|++.|++++++++++.+|+.++..++++++++.|+++++.+|.++|+.|++.++
T Consensus 90 ~~~~~~~~v~~n~Sl~~v~VsF~q~iKa~~P~~tvl~~~~~~~~~~s~~~~lsL~piv~GV~ias~~e~~fn~~G~i~a~ 169 (316)
T KOG1441|consen 90 GLVFCISHVLGNVSLSYVPVSFYQTIKALMPPFTVLLSVLLLGKTYSSMTYLSLLPIVFGVAIASVTELSFNLFGFISAM 169 (316)
T ss_pred HHHHHHHHHhcchhhhccchhHHHHHHhhcchhHHHHHHHHhCCCCcceEEEEEEEeeeeEEEeeeccccccHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhc--CCCCCChhHHHHHHhhhHHHHHH-HHHHHh
Q 026910 163 TSVFFQTMYLVLVEKSG--AEDGLSSVEIMFYNSFLSLPFLV-FLIIVT 208 (231)
Q Consensus 163 ~s~~~~a~~~v~~~~~~--~~~~~~~~~~~~y~~~~~~~~l~-~~~~~~ 208 (231)
.+++..++++++.++++ +++++|+.++++|+++.++..++ |.....
T Consensus 170 ~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~ 218 (316)
T KOG1441|consen 170 ISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYV 218 (316)
T ss_pred HHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhh
Confidence 99999999999999998 46789999999999999999999 655443
No 5
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=99.92 E-value=3.4e-23 Score=178.06 Aligned_cols=207 Identities=25% Similarity=0.317 Sum_probs=174.1
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHH
Q 026910 18 ALSYGVSSMAMVFINKAVIMQYA--HSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALA 95 (231)
Q Consensus 18 ~~~~~~~s~~~~~~nK~ll~~~~--~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~ 95 (231)
..+|+.+.......+|..-..++ +|..+++.|+.++.+.......... .++.++...+++++.++++.++..++|.
T Consensus 6 ~~i~~~~~~~g~~qE~i~~~~~~~~~~~~lt~~q~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (303)
T PF08449_consen 6 AGIFGGCCSYGILQEKIMTTPYGSPFPLFLTFVQFAFNALFSFILLSLFK--FPKSRKIPLKKYAILSFLFFLASVLSNA 83 (303)
T ss_pred HHHHHHHHHHHHHHHHHHcCCCCCcccHHHHHHHHHHHHHHHHHHHHhcc--ccCCCcChHHHHHHHHHHHHHHHHHHHH
Confidence 34455555444555665544444 4889999999999988777654432 2233344568899999999999999999
Q ss_pred hccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecccc----cc------hHHHHHHHHHH
Q 026910 96 SLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFS----FD------LSGYSMALTSV 165 (231)
Q Consensus 96 sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~~----~~------~~G~~~~l~s~ 165 (231)
|++|+|+|++++.|+++|+++++++.+++|||++++++++++++++|+++.+.+|.+ .+ ..|+++.+++.
T Consensus 84 al~~i~~p~~~~~ks~~~i~vmi~~~l~~~k~y~~~~~~~v~li~~Gv~~~~~~~~~~~~~~~~~~~~~~~G~~ll~~sl 163 (303)
T PF08449_consen 84 ALKYISYPTQIVFKSSKPIPVMILGVLILGKRYSRRQYLSVLLITIGVAIFTLSDSSSSSSSNSSSFSSALGIILLLLSL 163 (303)
T ss_pred HHHhCChHHHHHHhhhHHHHHHHHHHHhcCccccHHHHHHHHHHHhhHheeeecccccccccccccccchhHHHHHHHHH
Confidence 999999999999999999999999999999999999999999999999998775531 11 23999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHH--hCChHHHHHHhhhhcccee
Q 026910 166 FFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIV--TGEFPGSLSLLFSKVRIFV 226 (231)
Q Consensus 166 ~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~--~ge~~~~~~~~~~~~~~~~ 226 (231)
+++|.+.+++|++.++++.+++|+++|+|.++.++..+.... +||+.+..++...+|....
T Consensus 164 ~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~ 226 (303)
T PF08449_consen 164 LLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLL 226 (303)
T ss_pred HHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHH
Confidence 999999999999998889999999999999999999999999 9999999999999887544
No 6
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=99.91 E-value=5.2e-24 Score=169.72 Aligned_cols=195 Identities=26% Similarity=0.387 Sum_probs=179.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHHHHHHHHH
Q 026910 16 FAALSYGVSSMAMVFINKAVIMQYAHSM--TLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFA 93 (231)
Q Consensus 16 ~~~~~~~~~s~~~~~~nK~ll~~~~~p~--~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 93 (231)
..++.|+..|+.+++.||++++..||++ .+.++|...+.+.+.+.+..|..+++ .++.|+|+|.+++...+++.+
T Consensus 9 ~~~lsYc~sSIlmTltNKyVls~~gfnMnflll~vQSlvcvv~l~iLk~l~~~~fR---~t~aK~WfpiSfLLv~MIyt~ 85 (309)
T COG5070 9 TASLSYCFSSILMTLTNKYVLSNLGFNMNFLLLAVQSLVCVVGLLILKFLRLVEFR---LTKAKKWFPISFLLVVMIYTS 85 (309)
T ss_pred hHHHHHHHHHHHHHHhhHheecCCCCchhhHHHHHHHHHHHHHHHHHHHHhHhhee---hhhhhhhcCHHHHHHHHHHhc
Confidence 4678999999999999999999888876 48899999999998888888766654 567899999999999999999
Q ss_pred HHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheeccc--------ccchHHHHHHHHHH
Q 026910 94 LASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF--------SFDLSGYSMALTSV 165 (231)
Q Consensus 94 n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~--------~~~~~G~~~~l~s~ 165 (231)
..|++|+++|.|++.|+++++.++.++..++|.|++.....+.+++++...++.++|. .+| .|++|+..++
T Consensus 86 SKsLqyL~vpiYTiFKNltII~iAygEvl~Fgg~vtsl~l~SFilMvlSS~va~w~D~q~~~~~~~~lN-~GY~Wm~~Nc 164 (309)
T COG5070 86 SKSLQYLAVPIYTIFKNLTIILIAYGEVLFFGGRVTSLELLSFILMVLSSVVATWGDQQASAFKAQILN-PGYLWMFTNC 164 (309)
T ss_pred ccceeeeeeeHHHHhccceeehhHhhHHHHhcCccchhhHHHHHHHHHHHHHhccchhhHHHHHhcccC-CceEEEehhh
Confidence 9999999999999999999999999999999999999999999999999999999998 456 8999999999
Q ss_pred HHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCChHHH
Q 026910 166 FFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGS 214 (231)
Q Consensus 166 ~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~~~ 214 (231)
+..+.+-...|+..+-.+....+.+||+|+.+.+.++...+.++||+.-
T Consensus 165 lssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~ 213 (309)
T COG5070 165 LSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPG 213 (309)
T ss_pred HhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcc
Confidence 9999999999998776677889999999999999999999999988754
No 7
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=99.91 E-value=1.7e-23 Score=173.67 Aligned_cols=197 Identities=17% Similarity=0.192 Sum_probs=175.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCc----CCCCCH-HHHHHHHHHHHHHH
Q 026910 13 LGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTK----SKAIDL-MTAKKLLPVSLFYN 87 (231)
Q Consensus 13 ~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~----~~~~~~-~~~~~~~~~~~~~~ 87 (231)
..+..++.|+++|+++.+++|+.-.+++||++++.+|+++-.++....++....+ ..+++| +.+|+..|+++..+
T Consensus 16 ~~L~lVl~yY~~Si~Ltf~~~~~~~~f~fPLf~ts~h~~v~flfa~~~~~l~~~~~~r~r~~~sw~~~Lr~~aPtalata 95 (349)
T KOG1443|consen 16 LTLALVLLYYFLSIGLTFYFKWLTKNFHFPLFVTSLHLAVKFLFAALSRRLYQCSVPRARVVLSWRDYLRRLAPTALATA 95 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHhhhhhcCcCCchHHHHHHHHHHHHHHHHHHHHHhccCCccccCCcHHHHHHHhhhhhhhhh
Confidence 3455679999999999999999988999999999999999888766554322111 225677 57899999999999
Q ss_pred HHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecccccchHHHHHHHHHHHH
Q 026910 88 ANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFF 167 (231)
Q Consensus 88 ~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~ 167 (231)
.++.++|+|++|+++++|+|.|+..++|+.+++.++.-|++++.-...+.++..|+++.++.+.++|..|+++.++++++
T Consensus 96 ~DIGLSN~sl~yVtlSlYTM~KSSsi~FIllFs~if~lEk~~w~L~l~v~lI~~Glflft~KsTqf~i~Gf~lv~~aS~~ 175 (349)
T KOG1443|consen 96 LDIGLSNWSLEYVTLSLYTMTKSSSILFILLFSLIFKLEKFRWALVLIVLLIAVGLFLFTYKSTQFNIEGFFLVLAASLL 175 (349)
T ss_pred cccccccceeeeeeeeeeeeccccHHHHHHHHHHHHHhHHHHHHHHHHHHHHhhheeEEEecccceeehhHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhcCCC---CCChhHHHHHHhhhHHHHHHHHHHHhC
Q 026910 168 QTMYLVLVEKSGAED---GLSSVEIMFYNSFLSLPFLVFLIIVTG 209 (231)
Q Consensus 168 ~a~~~v~~~~~~~~~---~~~~~~~~~y~~~~~~~~l~~~~~~~g 209 (231)
.|++..++|.++++. +-+|.+++++.+++....++|..+..+
T Consensus 176 sGlRW~~tQ~ll~~~~~~~~~P~~ti~~l~p~M~~~Ll~~~l~fE 220 (349)
T KOG1443|consen 176 SGLRWAFTQMLLRNQPSAKRNPIDTIFHLQPWMSIGLLPLSLLFE 220 (349)
T ss_pred hhhhHHHHHHHHhcCccccCCCeeeHHHhhhHHHHHHHHHHHHHc
Confidence 999999999988653 468999999999999999999887763
No 8
>KOG1442 consensus GDP-fucose transporter [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=1.8e-23 Score=171.12 Aligned_cols=203 Identities=21% Similarity=0.253 Sum_probs=178.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc----CCCcHHHHHHHHHHHHHHHHHH----HHc-CCCcCC--CCCHHHHHHHHHHHH
Q 026910 16 FAALSYGVSSMAMVFINKAVIMQ----YAHSMTLLTLQQLATALLIQAG----RQM-GYTKSK--AIDLMTAKKLLPVSL 84 (231)
Q Consensus 16 ~~~~~~~~~s~~~~~~nK~ll~~----~~~p~~l~~~q~~~~~~~~~~~----~~~-~~~~~~--~~~~~~~~~~~~~~~ 84 (231)
.....|..+|+++.+.||++++. .+-|.+++++|++.+..++... ++. +.++.+ +++.+..++++|+++
T Consensus 31 ~~vs~ywv~SI~~vf~nk~llss~~~~Ld~plf~t~~qcLvt~~~c~~ls~ls~k~~~~ftfp~~~ldl~t~r~vlplsv 110 (347)
T KOG1442|consen 31 SAVSLYWVTSIGLVFLNKHLLSSLVVILDAPLFITWYQCLVTTSICLVLSSLSVKYPGLFTFPSLQLDLATARQVLPLSV 110 (347)
T ss_pred hhccceeeeeehhhhhHHHHhhchhhhcCcHHHHHHHHHHHHHHHHHHHHHHHhhccceeccCcccccHHHHHhhcchhh
Confidence 34567888999999999999974 5789999999999998766554 233 233333 366678999999999
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecc---cccchHHHHHH
Q 026910 85 FYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD---FSFDLSGYSMA 161 (231)
Q Consensus 85 ~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~---~~~~~~G~~~~ 161 (231)
.+.+++.++|.+|+|+++++|++-|+++.+|+++..++++|+|.+.....++.++++|..+..-.| ..+++.|.+++
T Consensus 111 Vfi~mI~fnnlcL~yVgVaFYyvgRsLttvFtVlLtyvllkqkTs~~~~~~C~lIi~GF~lGvdqE~~~~~ls~~GvifG 190 (347)
T KOG1442|consen 111 VFILMISFNNLCLKYVGVAFYYVGRSLTTVFTVLLTYVLLKQKTSFFALGCCLLIILGFGLGVDQEGSTGTLSWIGVIFG 190 (347)
T ss_pred eeeeehhccceehhhcceEEEEeccchhhhHHHHhHHhhcccccccccceeehhheehheeccccccccCccchhhhHHH
Confidence 999999999999999999999999999999999999999999999999999999999988776555 46789999999
Q ss_pred HHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCChHHHHHHh
Q 026910 162 LTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLL 218 (231)
Q Consensus 162 l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~~~~~~~ 218 (231)
+.++++.|+..+++||......-.-|.+.+|+|..+.++.+|.....||+++++.+.
T Consensus 191 VlaSl~vAlnaiytkk~l~~v~~~iw~lt~ynnv~a~lLflpll~lnge~~~v~~~~ 247 (347)
T KOG1442|consen 191 VLASLAVALNAIYTKKVLPPVGDCIWRLTAYNNVNALLLFLPLLILNGEFQAVVGFP 247 (347)
T ss_pred HHHHHHHHHHHHhhheecccccCeehhhHHHHHHHHHHHHHHHHHHcchHHHHcCcc
Confidence 999999999999999998766667899999999999999999999999999988743
No 9
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.83 E-value=1.5e-20 Score=151.19 Aligned_cols=183 Identities=17% Similarity=0.166 Sum_probs=161.0
Q ss_pred CcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHH
Q 026910 41 HSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAG 120 (231)
Q Consensus 41 ~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~ 120 (231)
|..++.+.|+.++.+..-+....+ +..+.|....+.+..+++.|.+.++.+|.+++|+|.|+..+-|++.|+.+++++
T Consensus 52 falaLVf~qC~~N~vfAkvl~~ir--~~~~~D~t~~~~YaAcs~sYLlAMVssN~Alq~vpYPTqVlgKScKPIPVMilG 129 (337)
T KOG1580|consen 52 FALALVFFQCTANTVFAKVLFLIR--KKTEIDNTPTKMYAACSASYLLAMVSSNQALQYVPYPTQVLGKSCKPIPVMILG 129 (337)
T ss_pred HHHHHHHHHHHHHHHHHHhheeec--ccccccCCcchHHHHHHHHHHHHHHhccchhcccCCcHHHhcccCCCcceeeee
Confidence 445688999999998877665433 234455555678889999999999999999999999999999999999999999
Q ss_pred HHhcCCCCChHHHHHHHHHHhhhhhheeccc-------ccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHH
Q 026910 121 FFSGKGKPTTQVTLSVLLTATGCVIAALGDF-------SFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYN 193 (231)
Q Consensus 121 ~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~-------~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~ 193 (231)
..+.+++++|+++.++++++.|+++..+.+. +....|-++.++|.-.+++....++++.+.++-++-++|+|+
T Consensus 130 Vl~~~KsY~w~kY~cVL~IV~GValFmYK~~Kv~g~e~~t~g~GElLL~lSL~mDGlTg~~Qdrira~yq~~g~~MM~~~ 209 (337)
T KOG1580|consen 130 VLFAHKSYHWRKYCCVLMIVVGVALFMYKENKVGGAEDKTFGFGELLLILSLAMDGLTGSIQDRIRASYQRTGTSMMFYT 209 (337)
T ss_pred hhhhcccccHHHHHHHHHHHHHHHHhhccccccCCCcccccchHHHHHHHHHHhcccchhHHHHHHHhhccCchhhHHHH
Confidence 9999999999999999999999999866432 222599999999999999999999999988888999999999
Q ss_pred hhhHHHHHHHHHHHhCChHHHHHHhhhhccce
Q 026910 194 SFLSLPFLVFLIIVTGEFPGSLSLLFSKVRIF 225 (231)
Q Consensus 194 ~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~ 225 (231)
|+++.+.+....+++||.+++..+...+|-.+
T Consensus 210 NlwStL~Lg~g~lfTGElweF~yF~~RhP~~~ 241 (337)
T KOG1580|consen 210 NLWSTLYLGAGLLFTGELWEFFYFVQRHPYVF 241 (337)
T ss_pred HHHHHHHhhhhheehhhHHHHHHHHHhccHHH
Confidence 99999999999999999999999999888655
No 10
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.79 E-value=5e-17 Score=135.35 Aligned_cols=207 Identities=17% Similarity=0.148 Sum_probs=173.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhc-------------CCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHH
Q 026910 16 FAALSYGVSSMAMVFINKAVIMQ-------------YAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPV 82 (231)
Q Consensus 16 ~~~~~~~~~s~~~~~~nK~ll~~-------------~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (231)
..-++|+...+-.+++.--++++ |..|.++.++|-+.+.++.+.+.+....+ ....+.++++...
T Consensus 12 ~~~L~~c~~GI~~t~l~~gVlQEki~T~~y~~~~~rF~~~~fL~~~q~l~~~~~s~~~l~~~k~~--~~~~apl~~y~~i 89 (327)
T KOG1581|consen 12 IILLVFCFSGIYATFLTWGVLQEKIMTRPYGEDGERFEHSLFLVFCQRLVALLVSYAMLKWWKKE--LSGVAPLYKYSLI 89 (327)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcceeecccCcccccccccHHHHHHHHHHHHHHHHHHHhccccc--CCCCCchhHHhHH
Confidence 34445555555555555445542 34678899999999998887765543222 2223456788889
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheeccc---------cc
Q 026910 83 SLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF---------SF 153 (231)
Q Consensus 83 ~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~---------~~ 153 (231)
++....+..++..||+|+|.|.+.+.|++..+.+++.+.+++|+|++..++++..++..|+.+...++. +.
T Consensus 90 s~tn~~s~~~~yeaLKyvSyPtq~LaKscKmIPVmlmg~Lvy~~ky~~~eYl~~~LIs~GvsiF~l~~~s~s~~~~g~~n 169 (327)
T KOG1581|consen 90 SFTNTLSSWCGYEALKYVSYPTQTLAKSCKMIPVMLMGTLVYGRKYSSFEYLVAFLISLGVSIFSLFPNSDSSSKSGREN 169 (327)
T ss_pred HHHhhcchHHHHHHHHhccchHHHHHHHhhhhHHHHHHHHHhcCccCcHHHHHHHHHHhheeeEEEecCCCCccccCCCC
Confidence 999999999999999999999999999999999999999999999999999999999999998765321 24
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCChHHHHHHhhhhccc
Q 026910 154 DLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKVRI 224 (231)
Q Consensus 154 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~ 224 (231)
++.|+.++..+.+++++.+..++++.++.+.+++++|+|.|+++++......+..|.+++..+++++||.-
T Consensus 170 s~~G~~Ll~~~L~fDgfTn~tQd~lf~~~k~s~~~mM~~vNLf~~i~~~~~li~qg~~~~av~F~~~hp~~ 240 (327)
T KOG1581|consen 170 SPIGILLLFGYLLFDGFTNATQDSLFKKYKVSSLHMMFGVNLFSAILNGTYLILQGHLLPAVSFIKEHPDV 240 (327)
T ss_pred chHhHHHHHHHHHHHhhHHhHHHHHhccCCccHhHHHHHHHHHHHHHHHHhhhcCCCCchHHHHHHcChhH
Confidence 58999999999999999999999999999999999999999999999999988999999999999999853
No 11
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=99.68 E-value=1.4e-14 Score=121.45 Aligned_cols=176 Identities=16% Similarity=0.132 Sum_probs=138.2
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHH-HHHHHHHHHHHhccCCChhHHHHH
Q 026910 30 FINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSL-FYNANVAFALASLKGVNIPMYIAI 108 (231)
Q Consensus 30 ~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~n~sl~~~sv~~~~il 108 (231)
...|+.+++..-|..+...|++++.+.+.+....+ .++++.++.+..+. ...+...+.+.|++|+|.+...++
T Consensus 6 ~~~k~~~~~~~~~~~~~~~r~~~~~l~l~~~~~~~------~~~~~~~~~~~~~~~~~~l~~~~~~~a~~~~~~~~~~ii 79 (260)
T TIGR00950 6 VVIGQYLEGQVPLYFAVFRRLIFALLLLLPLLRRR------PPLKRLLRLLLLGALQIGVFYVLYFVAVKRLPVGEAALL 79 (260)
T ss_pred HHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHhc------cCHhHHHHHHHHHHHHHHHHHHHHHHHHHhcChhhhHHH
Confidence 45799887644355688999998877665543332 23444455566664 468888899999999999999999
Q ss_pred HHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheec-ccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChh
Q 026910 109 KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG-DFSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSV 187 (231)
Q Consensus 109 k~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~-~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~ 187 (231)
.++.|+++.+++.+++|||++++++.++.+.++|+.+...+ +.+.+..|+.++++++++++.+.+..|+..++.+.++.
T Consensus 80 ~~~~P~~~~~~~~l~~~e~~~~~~~~gi~i~~~Gv~li~~~~~~~~~~~G~~~~l~a~~~~a~~~~~~k~~~~~~~~~~~ 159 (260)
T TIGR00950 80 LYLAPLYVTLLSDLMGKERPRKLVLLAAVLGLAGAVLLLSDGNLSINPAGLLLGLGSGISFALGTVLYKRLVKKEGPELL 159 (260)
T ss_pred HhhhHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHhhccCCcccccHHHHHHHHHHHHHHHHHHHHHhHHhhcCCchHH
Confidence 99999999999999999999999999999999999987543 34556789999999999999999999998754433344
Q ss_pred HHHHHHhhhHHHHHHHHHHHhCCh
Q 026910 188 EIMFYNSFLSLPFLVFLIIVTGEF 211 (231)
Q Consensus 188 ~~~~y~~~~~~~~l~~~~~~~ge~ 211 (231)
....+....+.+++.+.....++.
T Consensus 160 ~~~~~~~~~~~~~l~~~~~~~~~~ 183 (260)
T TIGR00950 160 QFTGWVLLLGALLLLPFAWFLGPN 183 (260)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCC
Confidence 454466778888888887776543
No 12
>KOG1582 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=99.64 E-value=2.2e-15 Score=123.79 Aligned_cols=189 Identities=19% Similarity=0.217 Sum_probs=160.8
Q ss_pred HHHHHhcCCC---cHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHH
Q 026910 32 NKAVIMQYAH---SMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAI 108 (231)
Q Consensus 32 nK~ll~~~~~---p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~il 108 (231)
-.++++.-|| -..++..|+.+=..+.++....=.-+.+..+| |.+..++.+..+++.++|.|+.|++.|...+.
T Consensus 62 qElif~~~gfkp~GWylTlvQf~~Ysg~glie~~~~~~k~r~iP~---rtY~~la~~t~gtmGLsn~SlgYLNYPtQviF 138 (367)
T KOG1582|consen 62 QELIFNVEGFKPFGWYLTLVQFLVYSGFGLIELQLIQTKRRVIPW---RTYVILAFLTVGTMGLSNGSLGYLNYPTQVIF 138 (367)
T ss_pred HHHHhccccCcccchHHHHHHHHHHHhhhheEEEeecccceecch---hHhhhhHhhhhhccccCcCccccccCcHHHHH
Confidence 3445443333 35799999987765544433221112334454 77788899999999999999999999999999
Q ss_pred HHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheeccc----ccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Q 026910 109 KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF----SFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGL 184 (231)
Q Consensus 109 k~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~----~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~ 184 (231)
|++..+.+++.+.++-|+|.++..+.+..++.+|.++.+..|. +||..|+...-.+.+++|.-...+++.++..+-
T Consensus 139 KccKliPVmiggifIqGkRY~v~d~~aA~lm~lGli~FTLADs~~sPNF~~~Gv~mIsgALl~DA~iGNvQEk~m~~~~~ 218 (367)
T KOG1582|consen 139 KCCKLIPVMIGGIFIQGKRYGVHDYIAAMLMSLGLIWFTLADSQTSPNFNLIGVMMISGALLADAVIGNVQEKAMKMNPA 218 (367)
T ss_pred HhhhhhhhhheeeeeccccccHHHHHHHHHHHHHHHhhhhcccccCCCcceeeHHHHHHHHHHHHHhhHHHHHHHhhCCC
Confidence 9999999999999999999999999999999999999988664 678899999999999999999999999987778
Q ss_pred ChhHHHHHHhhhHHHHHHHHHHHhCChHHHHHHhhhhcc
Q 026910 185 SSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKVR 223 (231)
Q Consensus 185 ~~~~~~~y~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~ 223 (231)
++.|+.+|+.-.+.++++.+...+||+-+.+.+..+||-
T Consensus 219 ss~EmvfySy~iG~vflf~~mvlTge~f~a~~fcaehp~ 257 (367)
T KOG1582|consen 219 SSSEMVFYSYGIGFVFLFAPMVLTGELFSAWTFCAEHPV 257 (367)
T ss_pred CcceEEEeeecccHHHHHHHHHhcccchhhhHHHHhCcH
Confidence 999999999999999999999999999999999998885
No 13
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=99.63 E-value=2.8e-13 Score=115.87 Aligned_cols=187 Identities=11% Similarity=0.045 Sum_probs=143.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHH-HHHHH
Q 026910 13 LGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFY-NANVA 91 (231)
Q Consensus 13 ~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 91 (231)
..++..++|+...+. .|...++.+ |..++++|+.++.+.+.+....+. .++.++++.++....|.+. .....
T Consensus 12 ~~~~~~~iWg~~~~~----~K~~~~~~~-p~~~~~~R~~~a~l~ll~~~~~~~--~~~~~~~~~~~~~~~g~~~~~~~~~ 84 (292)
T PRK11272 12 ALFALYIIWGSTYLV----IRIGVESWP-PLMMAGVRFLIAGILLLAFLLLRG--HPLPTLRQWLNAALIGLLLLAVGNG 84 (292)
T ss_pred HHHHHHHHHhhHHHH----HHHHhccCC-HHHHHHHHHHHHHHHHHHHHHHhC--CCCCcHHHHHHHHHHHHHHHHHHHH
Confidence 345678899987754 688877654 788999999999876655432221 1223456677777777664 55666
Q ss_pred HHHHhc-cCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheec-ccccchHHHHHHHHHHHHHH
Q 026910 92 FALASL-KGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG-DFSFDLSGYSMALTSVFFQT 169 (231)
Q Consensus 92 ~~n~sl-~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~-~~~~~~~G~~~~l~s~~~~a 169 (231)
+.+.+. ++++.+...++-.+.|+++.+++.+ +|||++++++.++++.++|+.+...+ +.+.+..|.++++++++++|
T Consensus 85 ~~~~~~~~~~~a~~a~~l~~~~Pl~~~lla~~-~~e~~~~~~~~~~~la~~Gv~ll~~~~~~~~~~~G~l~~l~a~~~~a 163 (292)
T PRK11272 85 MVTVAEHQNVPSGIAAVVVATVPLFTLCFSRL-FGIRTRKLEWLGIAIGLAGIVLLNSGGNLSGNPWGAILILIASASWA 163 (292)
T ss_pred HHHHHHHccCcHHHHHHHHHHHHHHHHHHHHH-hcccCchhHHHHHHHHHHhHHHHhcCcccccchHHHHHHHHHHHHHH
Confidence 778888 9999999999999999999999986 69999999999999999999987543 44556789999999999999
Q ss_pred HHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCC
Q 026910 170 MYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGE 210 (231)
Q Consensus 170 ~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge 210 (231)
.|.+..|+..++ ++.....+....+...+.+.....|+
T Consensus 164 ~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (292)
T PRK11272 164 FGSVWSSRLPLP---VGMMAGAAEMLAAGVVLLIASLLSGE 201 (292)
T ss_pred HHHHHHHhcCCC---cchHHHHHHHHHHHHHHHHHHHHcCC
Confidence 999999987432 34455667777777777777666543
No 14
>PRK11689 aromatic amino acid exporter; Provisional
Probab=99.62 E-value=1.7e-13 Score=117.52 Aligned_cols=170 Identities=15% Similarity=0.163 Sum_probs=126.9
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHHH
Q 026910 8 EISPFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYN 87 (231)
Q Consensus 8 ~~~~~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (231)
.++....++.+++|+...+ ..|...++++ |..+.++|+..+.+++....+. ++.++++.+..+..++.+.
T Consensus 3 ~~~~l~~l~a~~~Wg~~~~----~~k~~~~~~~-P~~~~~~R~~~a~l~l~~~~~~-----~~~~~~~~~~~~~~~l~~~ 72 (295)
T PRK11689 3 QKATLIGLIAILLWSTMVG----LIRGVSESLG-PVGGAAMIYSVSGLLLLLTVGF-----PRLRQFPKRYLLAGGLLFV 72 (295)
T ss_pred cchhHHHHHHHHHHHHHHH----HHHHHHccCC-hHHHHHHHHHHHHHHHHHHccc-----cccccccHHHHHHHhHHHH
Confidence 3445677888999998864 4798888865 8899999999998776654321 1111222233344444456
Q ss_pred HHHHHHHHhcc----CCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheeccc-----------c
Q 026910 88 ANVAFALASLK----GVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF-----------S 152 (231)
Q Consensus 88 ~~~~~~n~sl~----~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~-----------~ 152 (231)
....+.+.+++ +.+.....++..+.|+++.+++.+++|||+++++++++++.++|+++...++. +
T Consensus 73 ~~~~~~~~a~~~~~~~~~a~~a~~l~~~~Pi~~~ll~~~~~~e~~~~~~~~g~~l~~~Gv~li~~~~~~~~~~~~~~~~~ 152 (295)
T PRK11689 73 SYEICLALSLGYANTRRQAIEVGMVNYLWPSLTILFAVLFNGQKANWLLIPGLLLALAGVAWVLGGDNGLSLAELINNIA 152 (295)
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHhHHHHHHHHHHHhcCCccHHHHHHHHHHHHhHhheecCCccchhhhhhhccc
Confidence 66666666664 46777788999999999999999999999999999999999999998764432 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHH
Q 026910 153 FDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEI 189 (231)
Q Consensus 153 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~ 189 (231)
.+..|.++++.+++++|.|.++.||..+ +.++...
T Consensus 153 ~~~~G~~~~l~aa~~~A~~~v~~k~~~~--~~~~~~~ 187 (295)
T PRK11689 153 SNPLSYGLAFIGAFIWAAYCNVTRKYAR--GKNGITL 187 (295)
T ss_pred cChHHHHHHHHHHHHHHHHHHHHhhccC--CCCchhH
Confidence 2346999999999999999999999854 3466554
No 15
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=99.60 E-value=2.4e-13 Score=117.55 Aligned_cols=142 Identities=16% Similarity=0.111 Sum_probs=125.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecccc
Q 026910 73 LMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFS 152 (231)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~~ 152 (231)
++++++++.++++-....++.+.|++|++++..|++..++.+++++++++++|+|+++.+++++++.++|+.+....|..
T Consensus 76 ~~~~w~y~lla~~Dv~aN~~~v~a~~yTsvtS~~lL~~~~i~~~~~LS~~fL~~ry~~~~~~gv~i~i~Gv~lv~~sD~~ 155 (334)
T PF06027_consen 76 KRPWWKYFLLALLDVEANYLVVLAYQYTSVTSVQLLDCTSIPFVMILSFIFLKRRYSWFHILGVLICIAGVVLVVVSDVL 155 (334)
T ss_pred chhHHHHHHHHHHHHHHHHHHHHHhhcccHhHHHhhhhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHhhhhheeeeccc
Confidence 34567788889999999999999999999999999999999999999999999999999999999999999988765531
Q ss_pred ---------cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCChHHHHHH
Q 026910 153 ---------FDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSL 217 (231)
Q Consensus 153 ---------~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~~~~~~ 217 (231)
-...|+++++.++.++|+++++.|+..++ .+..+.+....+++.++..+..... |.+++.+.
T Consensus 156 ~~~~~~~~~~~i~GDll~l~~a~lya~~nV~~E~~v~~--~~~~~~lg~~Glfg~ii~~iq~~il-e~~~i~~~ 226 (334)
T PF06027_consen 156 SGSDSSSGSNPILGDLLALLGAILYAVSNVLEEKLVKK--APRVEFLGMLGLFGFIISGIQLAIL-ERSGIESI 226 (334)
T ss_pred ccccCCCCCccchhHHHHHHHHHHHHHHHHHHHHhccc--CCHHHHHHHHHHHHHHHHHHHHHhe-ehhhhhcc
Confidence 23799999999999999999999998864 5788999999999999998887777 77766654
No 16
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=99.58 E-value=5.9e-13 Score=114.14 Aligned_cols=183 Identities=14% Similarity=0.073 Sum_probs=128.2
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHcCCCcC-C-CC-CHHHHHHHHHHH
Q 026910 8 EISPFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAG-RQMGYTKS-K-AI-DLMTAKKLLPVS 83 (231)
Q Consensus 8 ~~~~~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~-~~~~~~~~-~-~~-~~~~~~~~~~~~ 83 (231)
.++....+++.++|+...+. .|.+ .+.+ |..+.++|+.++.+.+... ...+..+. + +. ++++.......+
T Consensus 7 ~~g~~~~l~a~~~wg~~~~~----~k~~-~~~~-~~~~~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (296)
T PRK15430 7 RQGVLLALAAYFIWGIAPAY----FKLI-YYVP-ADEILTHRVIWSFFFMVVLMSICRQWSYLKTLIQTPQKIFMLAVSA 80 (296)
T ss_pred hhHHHHHHHHHHHHHHHHHH----HHHh-cCCC-HHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHcCHHHHHHHHHHH
Confidence 34556677888889988754 4875 4444 6779999999987644332 21111110 0 01 233333333344
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecccccchHHHHHHHH
Q 026910 84 LFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALT 163 (231)
Q Consensus 84 ~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~~~~~~G~~~~l~ 163 (231)
+.......+.+.+++++|++...++..+.|+++++++.+++|||++++++.++++.++|+.+....+.+.. .++++
T Consensus 81 ~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~v~l~~~~~l~E~~~~~~~~g~~l~~~Gv~li~~~~~~~~----~~~l~ 156 (296)
T PRK15430 81 VLIGGNWLLFIWAVNNHHMLEASLGYFINPLVNIVLGMIFLGERFRRMQWLAVILAICGVLVQLWTFGSLP----IIALG 156 (296)
T ss_pred HHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCcc----HHHHH
Confidence 56778899999999999999999999999999999999999999999999999999999998753222222 46888
Q ss_pred HHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHH
Q 026910 164 SVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPF 200 (231)
Q Consensus 164 s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~ 200 (231)
+++++|.|.+..|+..++...+......+..+.+.+.
T Consensus 157 aa~~~a~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~ 193 (296)
T PRK15430 157 LAFSFAFYGLVRKKIAVEAQTGMLIETMWLLPVAAIY 193 (296)
T ss_pred HHHHHHHHHHHHHhcCCCCchhHHHHHHHHHHHHHHH
Confidence 9999999999988875322223333344444444444
No 17
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=99.58 E-value=5.7e-13 Score=111.80 Aligned_cols=161 Identities=14% Similarity=0.080 Sum_probs=121.8
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HcCCC-----cCCCCCHHH-HHHHHHH
Q 026910 10 SPFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGR-QMGYT-----KSKAIDLMT-AKKLLPV 82 (231)
Q Consensus 10 ~~~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~-~~~~~-----~~~~~~~~~-~~~~~~~ 82 (231)
+....++++++|+...+. .|. ..+.+ |..+.++|++++.+.+.+.. ..+.. +.++.++++ .......
T Consensus 3 g~~~~i~a~~~wg~~~~~----~k~-~~~~~-~~~i~~~R~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 76 (256)
T TIGR00688 3 GIIVSLLASFLFGYMYYY----SKL-LKPLP-ATDILGHRMIWSFPFMLLSVTLFRQWAALIERLKRIQKRPLILSLLLC 76 (256)
T ss_pred cHHHHHHHHHHHHHHHHH----HHH-hccCC-HHHHHHHHHHHHHHHHHHHHHHHcchHHHHHHHhCcccchHHHHHHHH
Confidence 445667788889988754 687 34443 67899999999887654432 11110 111122222 3345667
Q ss_pred HHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecccccchHHHHHHH
Q 026910 83 SLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMAL 162 (231)
Q Consensus 83 ~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~~~~~~G~~~~l 162 (231)
+++...+..+.+.|+++++++...++..+.|+++++++.+++|||+++++++++++.++|+++....+.+.+ .+++
T Consensus 77 g~~~~~~~~~~~~a~~~~~~~~a~~l~~~~Pi~~~lla~~~l~Ek~~~~~~l~~~~~~~Gv~li~~~~~~~~----~~~l 152 (256)
T TIGR00688 77 GLLIGFNWWLFIWAVNNGSSLEVSLGYLINPLVMVALGRVFLKERISRFQFIAVIIATLGVISNIVLKGSLP----WEAL 152 (256)
T ss_pred HHHHHHHHHHHHHHHHcchHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHcCCch----HHHH
Confidence 777888999999999999999999999999999999999999999999999999999999997644322222 3578
Q ss_pred HHHHHHHHHHHHHHHhcC
Q 026910 163 TSVFFQTMYLVLVEKSGA 180 (231)
Q Consensus 163 ~s~~~~a~~~v~~~~~~~ 180 (231)
.+++++|.|.+..|+..+
T Consensus 153 ~aa~~~a~~~i~~~~~~~ 170 (256)
T TIGR00688 153 VLAFSFTAYGLIRKALKN 170 (256)
T ss_pred HHHHHHHHHHHHHhhcCC
Confidence 899999999999988754
No 18
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=99.56 E-value=2.8e-12 Score=110.07 Aligned_cols=185 Identities=12% Similarity=0.151 Sum_probs=131.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHH-HHHH
Q 026910 11 PFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLF-YNAN 89 (231)
Q Consensus 11 ~~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 89 (231)
....++..++|+...+. .|..+++.+ |..+.++|+.++.+.+....+. ++.++ +..+..++. ....
T Consensus 6 ~l~~l~~~~~Wg~~~~~----~k~~~~~~~-p~~~~~~R~~~a~~~l~~~~~~-----~~~~~---~~~~~~g~~~~~~~ 72 (299)
T PRK11453 6 GVLALLVVVVWGLNFVV----IKVGLHNMP-PLMLAGLRFMLVAFPAIFFVAR-----PKVPL---NLLLGYGLTISFGQ 72 (299)
T ss_pred HHHHHHHHHHHhhhHHH----HHHHHhcCC-HHHHHHHHHHHHHHHHHHHhcC-----CCCch---HHHHHHHHHHHHHH
Confidence 35577888999988755 688887765 7889999999876544333221 12222 234444553 2344
Q ss_pred HHHHHHhccC-CChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecc---cccchHHHHHHHHHH
Q 026910 90 VAFALASLKG-VNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD---FSFDLSGYSMALTSV 165 (231)
Q Consensus 90 ~~~~n~sl~~-~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~---~~~~~~G~~~~l~s~ 165 (231)
..+.+.+++| .|.+...++-.+.|+++.+++++++|||+++++++++++.++|+.+...++ .+.+..|..+++.++
T Consensus 73 ~~~~~~~~~~~~~a~~a~~l~~~~pi~~~ll~~~~l~e~~~~~~~~~~~l~~~Gv~ll~~~~~~~~~~~~~G~~l~l~aa 152 (299)
T PRK11453 73 FAFLFCAINFGMPAGLASLVLQAQAFFTIVLGAFTFGERLQGKQLAGIALAIFGVLVLIEDSLNGQHVAMLGFMLTLAAA 152 (299)
T ss_pred HHHHHHHHHhcCCHHHHHHHHHhHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHhHHHhccccCCCcchhHHHHHHHHHHH
Confidence 4456678887 688999999999999999999999999999999999999999999876432 234567999999999
Q ss_pred HHHHHHHHHHHHhcCCC-CCChhHHHHHHhhhHHHHHHHHHHHh
Q 026910 166 FFQTMYLVLVEKSGAED-GLSSVEIMFYNSFLSLPFLVFLIIVT 208 (231)
Q Consensus 166 ~~~a~~~v~~~~~~~~~-~~~~~~~~~y~~~~~~~~l~~~~~~~ 208 (231)
++++.|.+++|+..++. ..+......+....+.....+.+...
T Consensus 153 l~~a~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 196 (299)
T PRK11453 153 FSWACGNIFNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLIL 196 (299)
T ss_pred HHHHHHHHHHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHh
Confidence 99999999999976432 12233444555555544444444444
No 19
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=99.56 E-value=2.4e-12 Score=112.99 Aligned_cols=184 Identities=13% Similarity=0.139 Sum_probs=134.1
Q ss_pred HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH--HcCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCC
Q 026910 23 VSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGR--QMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGV 100 (231)
Q Consensus 23 ~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~sl~~~ 100 (231)
++...+..+.|..++.-=-|..+.++|+.++.+++.... +.+..+.++.+++++.++...+++......+.+.+++|+
T Consensus 23 ~~~~~~~~~~k~a~~~G~~~~~~~~~R~~iA~l~Ll~~~~~~~~~~~~~~~~~~~~~~l~l~g~~g~~~~~~~~~gl~~t 102 (358)
T PLN00411 23 TSVVGISTLFKVATSKGLNIYPFLGYSYLLASLLLLPSLFFTNRSRSLPPLSVSILSKIGLLGFLGSMYVITGYIGIEYS 102 (358)
T ss_pred HHHHHHHHHHHHHHHCCCCccHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 334445566788886421256799999999977655432 111113344567777888888877655666889999999
Q ss_pred ChhHHHHHHHhHHHHHHHHHHHh------cCCCCChHHHHHHHHHHhhhhhhee-ccc----------------------
Q 026910 101 NIPMYIAIKRLTPLAVLVAGFFS------GKGKPTTQVTLSVLLTATGCVIAAL-GDF---------------------- 151 (231)
Q Consensus 101 sv~~~~ilk~~~pi~~~l~~~~~------~~~~~s~~~~~s~~l~~~Gv~l~~~-~~~---------------------- 151 (231)
|.+...++-++.|+++++++.++ +|||.++++++++++.++|+++... ++.
T Consensus 103 sa~~asll~~~~P~~~~lla~~~~~e~~~~~er~~~~~~~G~~l~~~Gv~ll~~~~g~~~~~~~~~~~~~~~~~~~~~~~ 182 (358)
T PLN00411 103 NPTLASAISNITPALTFILAIIFRMEKVSFKERSSVAKVMGTILSLIGALVVIFYHGPRVFVASSPPYLNFRQLSPPLSS 182 (358)
T ss_pred cHHHHHHHHHhhHHHHHHHHHHHHhchhhhcccccHHHHHHHHHHHHHHHHHHHccCcccccccccccccccccccccCC
Confidence 99999999999999999999999 6999999999999999999997543 111
Q ss_pred -ccc-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCh-hHHHHHHhhhHHHHHHHHHHHh
Q 026910 152 -SFD-LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSS-VEIMFYNSFLSLPFLVFLIIVT 208 (231)
Q Consensus 152 -~~~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~-~~~~~y~~~~~~~~l~~~~~~~ 208 (231)
+-+ ..|.++.+.+++++|+|.+.+|+..++ +++ .....+....+.....+.+...
T Consensus 183 ~~~~~~lG~~l~l~aa~~wa~~~il~~~~~~~--~~~~~~~t~~~~~~~~~~~~~~~l~~ 240 (358)
T PLN00411 183 SNSDWLIGGALLTIQGIFVSVSFILQAHIMSE--YPAAFTVSFLYTVCVSIVTSMIGLVV 240 (358)
T ss_pred CcccHHHHHHHHHHHHHHHHHHHHHHHHHHHH--cCcHhHHHHHHHHHHHHHHHHHHHHH
Confidence 012 359999999999999999999998754 333 3445555555555555555544
No 20
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=99.53 E-value=2.8e-13 Score=112.90 Aligned_cols=136 Identities=16% Similarity=0.168 Sum_probs=120.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheeccc-
Q 026910 73 LMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF- 151 (231)
Q Consensus 73 ~~~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~- 151 (231)
+++..++..++++|.....+.+.++++++.+.+|+++.+.+++|++++++++|+|.++++|.++.+.+.|+.+...++.
T Consensus 14 ~~~~~~~~vPA~lY~~qn~L~~~al~~ld~~t~qvl~q~kIl~TAl~s~~~L~r~ls~~qW~aL~lL~~Gv~lv~~~~~~ 93 (244)
T PF04142_consen 14 PKDTLKLAVPALLYAIQNNLQFVALSYLDPSTFQVLSQSKILFTALFSVLLLKRRLSRRQWLALFLLVAGVVLVQLSSSQ 93 (244)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhhHHHHHHHHHHHHHHcccchhhHHHHHHHHHHHheeecCCcc
Confidence 4567788889999999999999999999999999999999999999999999999999999999999999998744211
Q ss_pred --------c--------cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHh
Q 026910 152 --------S--------FDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVT 208 (231)
Q Consensus 152 --------~--------~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ 208 (231)
+ -...|++..+++++++|+..++.|+++|+.+.+.+........+|.++.++.....
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~ 166 (244)
T PF04142_consen 94 SSDNSSSSSVHHDASNQNPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLS 166 (244)
T ss_pred ccccccccccccccccchhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcc
Confidence 1 12599999999999999999999999998887888888888888888887776554
No 21
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=99.50 E-value=1.4e-11 Score=105.51 Aligned_cols=181 Identities=18% Similarity=0.155 Sum_probs=134.0
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Q 026910 12 FLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVA 91 (231)
Q Consensus 12 ~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (231)
...+++++.|+..++ ..|+++++.+ |..+.++|+.++.+.+.+..+.+ .++.++++.+..+..|++......
T Consensus 15 ~~~~la~~~~~~~~~----~~K~~~~~~~-~~~~~~~R~~~a~l~l~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~ 86 (293)
T PRK10532 15 LLLLIAMASIQSGAS----LAKSLFPLVG-APGVTALRLALGTLILIAIFKPW---RLRFAKEQRLPLLFYGVSLGGMNY 86 (293)
T ss_pred HHHHHHHHHHHhhHH----HHHHHHHHcC-HHHHHHHHHHHHHHHHHHHHhHH---hccCCHHHHHHHHHHHHHHHHHHH
Confidence 344555666665554 5899988765 67799999999987766553221 124566777788888888888888
Q ss_pred HHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhee---cccccchHHHHHHHHHHHHH
Q 026910 92 FALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL---GDFSFDLSGYSMALTSVFFQ 168 (231)
Q Consensus 92 ~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~---~~~~~~~~G~~~~l~s~~~~ 168 (231)
+.+.+++|+|.+...++..+.|+++.+++ +|++.+. ..+.+.++|+.+... +..+.+..|.++++.+++++
T Consensus 87 ~~~~al~~~~~~~a~~l~~t~Pi~~~ll~----~~~~~~~--~~~~i~~~Gv~li~~~~~~~~~~~~~G~ll~l~aa~~~ 160 (293)
T PRK10532 87 LFYLSIQTVPLGIAVALEFTGPLAVALFS----SRRPVDF--VWVVLAVLGLWFLLPLGQDVSHVDLTGAALALGAGACW 160 (293)
T ss_pred HHHHHHhcccHHHHHHHHHHHHHHHHHHh----cCChHHH--HHHHHHHHHHheeeecCCCcccCChHHHHHHHHHHHHH
Confidence 89999999999999999999999999887 3555544 445667889887542 22234568999999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhC
Q 026910 169 TMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTG 209 (231)
Q Consensus 169 a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~g 209 (231)
|.|.+..|+..++ .++.... +....+...+.+.....+
T Consensus 161 a~~~v~~r~~~~~--~~~~~~~-~~~~~~~~~l~~~~~~~~ 198 (293)
T PRK10532 161 AIYILSGQRAGAE--HGPATVA-IGSLIAALIFVPIGALQA 198 (293)
T ss_pred HHHHHHHHHHhcc--CCchHHH-HHHHHHHHHHHHHHHHcc
Confidence 9999999998643 4666554 555677777777776653
No 22
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=99.47 E-value=1.5e-13 Score=113.19 Aligned_cols=205 Identities=19% Similarity=0.186 Sum_probs=155.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHH-HHcCCCcCCCCCHHHHHHHHHHHHHHHHHH
Q 026910 13 LGLFAALSYGVSSMAMVFINKAVIMQYAHS-MTLLTLQQLATALLIQAG-RQMGYTKSKAIDLMTAKKLLPVSLFYNANV 90 (231)
Q Consensus 13 ~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p-~~l~~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (231)
++.+..++-|+||-...+ ..+..+.+-. ..+++.|+++.+.-..+. .+.+..+ ++++. |.+...-..+....
T Consensus 5 ~~ai~~vf~GCcsnvv~l--E~L~~~~pgsgNLITFaqFlFia~eGlif~skf~~~k-~kipl---k~Y~i~V~mFF~vn 78 (330)
T KOG1583|consen 5 AAAISLVFGGCCSNVVFL--ELLVRNEPGSGNLITFAQFLFIATEGLIFTSKFFTVK-PKIPL---KDYAITVAMFFIVN 78 (330)
T ss_pred HHHHHHHHHhhhchHHHH--HHHHHhCCCCeeehHHHHHHHHHHhceeeeccccccC-CCCch---hhhheehheeeeee
Confidence 345566777888755332 4444443212 358999999887754443 3333323 55665 55555555666677
Q ss_pred HHHHHhccC-CChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheec---ccc--------------
Q 026910 91 AFALASLKG-VNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG---DFS-------------- 152 (231)
Q Consensus 91 ~~~n~sl~~-~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~---~~~-------------- 152 (231)
.++|.++++ +|+|.+.+.|+-.++.+++.++++.|+|++.+++.|++++.+|+++++.. |.+
T Consensus 79 v~NN~al~f~I~~PlHiIfRsgsll~nM~~g~il~~k~Ys~~Qy~Sv~~iTiGiiIcTl~s~~d~~~~~~~l~~~~~~~~ 158 (330)
T KOG1583|consen 79 VTNNYALKFNIPMPLHIIFRSGSLLANMILGWILLGKRYSLRQYSSVLMITIGIIICTLFSSKDGRSKLSGLDSGSAQSD 158 (330)
T ss_pred eeccceeeecccceEEEEEecCcHHHHHHHHHHhccceeehhhhhhHHhhhhhheeEEeecCcchhhhhcccccCccccc
Confidence 799999997 79999999999999999999999999999999999999999999998652 211
Q ss_pred cc--hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCChHHHHHHhhhhcccee
Q 026910 153 FD--LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKVRIFV 226 (231)
Q Consensus 153 ~~--~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~~ 226 (231)
+. ..|+.+..++.+.+|...+++|+..++++-++-|.+||++..+.++++ +..+|..+-++...+.+++..
T Consensus 159 ~~~w~iGi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Fl---f~~~div~~~~~~~~se~~~~ 231 (330)
T KOG1583|consen 159 FFWWLIGIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFL---FMGDDIVSHWRLAFKSESYLI 231 (330)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHH---HhcchHHHHHHHHhcCcceec
Confidence 11 378999999999999999999999988888999999999998887765 344577777777777766543
No 23
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=99.32 E-value=2e-09 Score=90.84 Aligned_cols=170 Identities=20% Similarity=0.166 Sum_probs=121.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHHHHHHHH
Q 026910 14 GLFAALSYGVSSMAMVFINKAVIMQYAHSMT-LLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAF 92 (231)
Q Consensus 14 ~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~-l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 92 (231)
.+...+.|+.... .-|...+. ..|.. ....|.....+......+.+..+.++..++..+..+..++.......+
T Consensus 12 ~l~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (292)
T COG0697 12 LLLWGLLWGLSFI----ALKLAVES-LDPFLFAAALRFLIAALLLLPLLLLEPRGLRPALRPWLLLLLLALLGLALPFLL 86 (292)
T ss_pred HHHHHHHHHHHHH----HHHHHhcc-cCChHHHHHHHHHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHHHHHHHH
Confidence 3444455555543 34544443 23544 666688888776443333322111122211223344445567888889
Q ss_pred HHHhccCCChhHHHHHHHhHHHHHHHHHH-HhcCCCCChHHHHHHHHHHhhhhhheeccccc---chHHHHHHHHHHHHH
Q 026910 93 ALASLKGVNIPMYIAIKRLTPLAVLVAGF-FSGKGKPTTQVTLSVLLTATGCVIAALGDFSF---DLSGYSMALTSVFFQ 168 (231)
Q Consensus 93 ~n~sl~~~sv~~~~ilk~~~pi~~~l~~~-~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~~~---~~~G~~~~l~s~~~~ 168 (231)
.+.++++++.+..+.+.++.|+++.+.+. +++|||++++++.++...+.|+.+....+... +..|..+++.+++++
T Consensus 87 ~~~~~~~~~~~~~~~l~~~~p~~~~~~~~~~~~~e~~~~~~~~~~~~~~~Gv~lv~~~~~~~~~~~~~g~~~~l~a~~~~ 166 (292)
T COG0697 87 LFLALKYTSASVASLIIGLLPLFTALLAVLLLLGERLSLLQILGILLALAGVLLILLGGGGGGILSLLGLLLALAAALLW 166 (292)
T ss_pred HHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHhHHheecCCCcchhHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999996 77799999999999999999999997765543 358999999999999
Q ss_pred HHHHHHHHHhcCCCCCChhHHHH
Q 026910 169 TMYLVLVEKSGAEDGLSSVEIMF 191 (231)
Q Consensus 169 a~~~v~~~~~~~~~~~~~~~~~~ 191 (231)
+++.+..|+.. +.++....+
T Consensus 167 a~~~~~~~~~~---~~~~~~~~~ 186 (292)
T COG0697 167 ALYTALVKRLS---RLGPVTLAL 186 (292)
T ss_pred HHHHHHHHHhc---CCChHHHHH
Confidence 99999999886 446666665
No 24
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=99.28 E-value=1.5e-09 Score=92.41 Aligned_cols=159 Identities=13% Similarity=0.096 Sum_probs=111.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HH-cCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Q 026910 14 GLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAG-RQ-MGYTKSKAIDLMTAKKLLPVSLFYNANVA 91 (231)
Q Consensus 14 ~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (231)
.+.+.+.|.... ...|-..++ ..+. ..+......+..... .. ....+.++.+++........++.......
T Consensus 6 ~~~aa~~~a~~~----~~~k~~~~~-~~~~--~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (281)
T TIGR03340 6 VVFSALMHAGWN----LMAKSHADK-EPDF--LWWALLAHSVLLTPYGLWYLAQVGWSRLPATFWLLLAISAVANMVYFL 78 (281)
T ss_pred HHHHHHHHHHHH----HHHhhcCCc-hhHH--HHHHHHHHHHHHHHHHHHhcccCCCCCcchhhHHHHHHHHHHHHHHHH
Confidence 344455555443 446744443 2232 344444444333322 21 11112233344444445555566788888
Q ss_pred HHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecc-cccchHHHHHHHHHHHHHHH
Q 026910 92 FALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD-FSFDLSGYSMALTSVFFQTM 170 (231)
Q Consensus 92 ~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~-~~~~~~G~~~~l~s~~~~a~ 170 (231)
+.+.++++.|.+....+..+.|+++.+++.+++||++++++++++.+++.|+.+....+ .+.+..|..++++++++++.
T Consensus 79 ~~~~a~~~~~~~~~~~l~~~~p~~~~l~~~~~~~e~~~~~~~~g~~~~~~Gv~ll~~~~~~~~~~~g~~~~l~aal~~a~ 158 (281)
T TIGR03340 79 GLAQAYHHADVGLVYPLARSSPLLVAIWATLTLGETLSPLAWLGILIITLGLLVLGLSRFAQHRRKAYAWALAAALGTAI 158 (281)
T ss_pred HHHHHHhcCChhhhhhHHhhhHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999875433 33556899999999999999
Q ss_pred HHHHHHHhc
Q 026910 171 YLVLVEKSG 179 (231)
Q Consensus 171 ~~v~~~~~~ 179 (231)
|.+..|+..
T Consensus 159 ~~i~~k~~~ 167 (281)
T TIGR03340 159 YSLSDKAAA 167 (281)
T ss_pred hhhhccccc
Confidence 999887764
No 25
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=99.24 E-value=4.3e-09 Score=90.23 Aligned_cols=201 Identities=12% Similarity=0.102 Sum_probs=149.4
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC---CcHH-HHHHHHHHHHHHHH-HHHHcCC---CcCCCC------CHHHHHH
Q 026910 13 LGLFAALSYGVSSMAMVFINKAVIMQYA---HSMT-LLTLQQLATALLIQ-AGRQMGY---TKSKAI------DLMTAKK 78 (231)
Q Consensus 13 ~~~~~~~~~~~~s~~~~~~nK~ll~~~~---~p~~-l~~~q~~~~~~~~~-~~~~~~~---~~~~~~------~~~~~~~ 78 (231)
.+.+..+.--+.+.++.+.-|+.-...+ .|.+ +.+.+.+=..++.. .+++.+. ...+.+ .+++..+
T Consensus 15 ~k~~~l~~~t~~~~~l~l~l~ys~~~~~~~f~~tt~v~~~Ei~Kl~~c~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~lk 94 (345)
T KOG2234|consen 15 MKYLSLIVLTAQNTALTLLLRYSRTREKPMFLPTTAVFLTEVIKLVFCLFLLLFEERKYAKKSLKSLSKEILAAPRETLK 94 (345)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHHHHHHHHHhhHHhhhhhhhcCHHHHhChHHHHH
Confidence 5555666666667777777777655333 2444 33334332222211 1222111 011122 2346778
Q ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheec-----c---
Q 026910 79 LLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG-----D--- 150 (231)
Q Consensus 79 ~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~-----~--- 150 (231)
+..+++.|...+.....++.+.+.++||+.-.+.+..|+++..+++|||.++++|.++++.+.|+.+.-.+ +
T Consensus 95 ~~vPa~iYalqNnl~yval~~ldaatyqVt~qlKI~tTA~f~vl~L~rkLs~~Qw~Al~lL~~Gv~~vQ~~~~~~~~a~~ 174 (345)
T KOG2234|consen 95 VSVPALIYALQNNLQYVALSNLDAATYQVTYQLKILTTAIFSVLILRRKLSRLQWMALVLLFAGVALVQLPSLSPTGAKS 174 (345)
T ss_pred HHHHHHHHHHhhhHHHHHHhcCCchhhhhhhhHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhccCCCCCCccC
Confidence 88889999999999999999999999999999999999999999999999999999999999999997521 1
Q ss_pred ---cccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCChHHH
Q 026910 151 ---FSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGS 214 (231)
Q Consensus 151 ---~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~~~ 214 (231)
.+-++.|+...+.+++.+++-+++.|+++|+.+.+.|-...-...++.++.+.....+ |.+..
T Consensus 175 ~~~~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~-d~~~i 240 (345)
T KOG2234|consen 175 ESSAQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQ-DGEAI 240 (345)
T ss_pred CCcccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhc-ccccc
Confidence 1124799999999999999999999999998888888888888889988888777666 54443
No 26
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=99.17 E-value=4.2e-10 Score=83.23 Aligned_cols=117 Identities=14% Similarity=0.204 Sum_probs=95.0
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHcCCCcCCCCCHHHHHHHHHHHHH-HHHHHHHHHHhccCCChhHHH
Q 026910 29 VFINKAVIMQYAHSMTLLTLQQLATALLIQAG-RQMGYTKSKAIDLMTAKKLLPVSLF-YNANVAFALASLKGVNIPMYI 106 (231)
Q Consensus 29 ~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~n~sl~~~sv~~~~ 106 (231)
...+|...++.+ |....++|+..+.+ +.+. ...+..+.++.++++.......+.+ ......+.+.++++.+++...
T Consensus 7 ~~~~k~~~~~~~-~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 84 (126)
T PF00892_consen 7 SVFSKKLLKKIS-PLSITFWRFLIAGI-LLILLLILGRKPFKNLSPRQWLWLLFLGLLGTALAYLLYFYALKYISASIVS 84 (126)
T ss_pred HHHHHHHhccCC-HHHHHHHHHHHHHH-HHHHHHhhccccccCCChhhhhhhhHhhccceehHHHHHHHHHHhcchhHHH
Confidence 355888887754 77899999999986 3332 1111112356667777777778877 588999999999999999999
Q ss_pred HHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhe
Q 026910 107 AIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 147 (231)
Q Consensus 107 ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~ 147 (231)
++..+.|+++.+.+++++||+++++++++++++++|+.+..
T Consensus 85 ~~~~~~pv~~~i~~~~~~~e~~~~~~~~g~~l~~~g~~l~~ 125 (126)
T PF00892_consen 85 ILQYLSPVFAAILGWLFLGERPSWRQIIGIILIIIGVVLIS 125 (126)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999998753
No 27
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=99.13 E-value=1.6e-09 Score=93.10 Aligned_cols=127 Identities=17% Similarity=0.198 Sum_probs=109.7
Q ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheeccc------cc--
Q 026910 82 VSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF------SF-- 153 (231)
Q Consensus 82 ~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~------~~-- 153 (231)
...+..+..++.|.||+|++++..+++.++.-+||..++.++.+||+++.+.+++.+.+.|+++++.+|. .-
T Consensus 165 fc~lWF~anl~~naALa~TsVAS~TilSStSs~FtL~la~if~~e~ft~sKllav~~si~GViiVt~~~s~~~~~~~a~~ 244 (416)
T KOG2765|consen 165 FCPLWFLANLTSNAALAFTSVASTTILSSTSSFFTLFLAAIFPVERFTLSKLLAVFVSIAGVIIVTMGDSKQNSDLPASR 244 (416)
T ss_pred HHHHHHHHHHHHHHHhhhhhhhhhhhhhhcchHHHHHHHHHcCcchhhHHHHHHHHHhhccEEEEEeccccccccCCccc
Confidence 4445567788999999999999999999999999999999999999999999999999999999987743 22
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCC--CCChhHHHHHHhhhHHHHHHHHHHHh
Q 026910 154 DLSGYSMALTSVFFQTMYLVLVEKSGAED--GLSSVEIMFYNSFLSLPFLVFLIIVT 208 (231)
Q Consensus 154 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~--~~~~~~~~~y~~~~~~~~l~~~~~~~ 208 (231)
...|.+++++++++||.|.++.|+...++ +.|-....-|..++..+++.|..+..
T Consensus 245 ~llG~llaL~sA~~YavY~vllk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL 301 (416)
T KOG2765|consen 245 PLLGNLLALLSALLYAVYTVLLKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIIL 301 (416)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHH
Confidence 37999999999999999999999988654 66666666688888888888777654
No 28
>KOG3912 consensus Predicted integral membrane protein [General function prediction only]
Probab=99.08 E-value=1.4e-08 Score=84.43 Aligned_cols=129 Identities=16% Similarity=0.166 Sum_probs=114.8
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheeccc-----
Q 026910 77 KKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF----- 151 (231)
Q Consensus 77 ~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~----- 151 (231)
+..+|.+++=.....+.|.+|.+++.+.+|++|....+||.+++..+++++.+.++|+++..+..|++++...|.
T Consensus 87 ~lfl~Pal~Di~gsslm~vgL~lTsASsfQMlRGaviIFvglfst~~Ln~ti~~~qWl~i~fv~lGlviVg~~d~~~~~~ 166 (372)
T KOG3912|consen 87 VLFLPPALCDIAGSSLMYVGLNLTSASSFQMLRGAVIIFVGLFSTMFLNRTITGRQWLGILFVSLGLVIVGSLDVHLVTD 166 (372)
T ss_pred ceecChHHHHHhhhHHHHHHHHHhhHHHHHHhhcchhhhhHHHHHHHHhcccchhhHHHHHHHHhhhheeeeeecccccC
Confidence 456778888888888899999999999999999999999999999999999999999999999999999876543
Q ss_pred -----ccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHH
Q 026910 152 -----SFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLI 205 (231)
Q Consensus 152 -----~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~ 205 (231)
+--..|..+.+.+-+.-|.+.++.||.+++.+.+|.+..-|..+++.+++...+
T Consensus 167 p~~d~s~iitGdllIiiaqiivaiQ~v~Eek~l~~~nV~pl~avg~eGlfG~v~~slL~ 225 (372)
T KOG3912|consen 167 PYTDYSSIITGDLLIIIAQIIVAIQMVCEEKQLKKSNVAPLQAVGWEGLFGLVILSLLA 225 (372)
T ss_pred CccccccchhhhHHHHHHHHHHHHHHHHHHhhhhhccCCHHHHhhhhhhHHHHHHHHHH
Confidence 223689999999999999999999999999999999999999999976665444
No 29
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=98.94 E-value=1.2e-07 Score=81.23 Aligned_cols=169 Identities=15% Similarity=0.161 Sum_probs=119.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHH-HcCCCcCCCCC-HHHHHHHHHHHHHHHHH
Q 026910 12 FLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGR-QMGYTKSKAID-LMTAKKLLPVSLFYNAN 89 (231)
Q Consensus 12 ~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~~~~~ 89 (231)
...++.+++||...+. .|.+. |.|..-. .+..++.++..... ..+ .++.+ ++....-+..|+.....
T Consensus 4 l~~lia~~~wGs~g~~----~k~~~---g~~~~~~-~~~~~g~l~~~~~~~~~~---~~~~~~~~~~~~g~l~G~~w~ig 72 (290)
T TIGR00776 4 LIALIPALFWGSFVLI----NVKIG---GGPYSQT-LGTTFGALILSIAIAIFV---LPEFWALSIFLVGLLSGAFWALG 72 (290)
T ss_pred HHHHHHHHHHhhhHHH----HhccC---CCHHHHH-HHHHHHHHHHHHHHHHHh---CCcccccHHHHHHHHHHHHHHhh
Confidence 4567788999988754 35442 4443311 24555554433321 111 11222 22333344455667888
Q ss_pred HHHHHHhccCCChhHHHHHHH-hHHHHHHHHHHHhcCCCCChHH----HHHHHHHHhhhhhheecccc-------cc-hH
Q 026910 90 VAFALASLKGVNIPMYIAIKR-LTPLAVLVAGFFSGKGKPTTQV----TLSVLLTATGCVIAALGDFS-------FD-LS 156 (231)
Q Consensus 90 ~~~~n~sl~~~sv~~~~ilk~-~~pi~~~l~~~~~~~~~~s~~~----~~s~~l~~~Gv~l~~~~~~~-------~~-~~ 156 (231)
..+...|.++++++....+-. +.++++.+.+.+++||+.++++ +++++++++|+.+.+..+.+ .| ..
T Consensus 73 ~~~~~~ai~~~gva~a~~i~~~~~~v~~~l~~~~~f~e~~t~~~~~~~~~g~~l~l~G~~l~~~~~~~~~~~~~~~~~~~ 152 (290)
T TIGR00776 73 QINQFKSMRYMGVSKTMPISTGFQLVGGTLFGVIVFGEWSTSIQTLLGLLALILIIIGVYLTSRSKDKSAGIKSEFNFKK 152 (290)
T ss_pred hhhHHHHHHHHhHHHHhHHHHHHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhHheEEeccccccccccccchhh
Confidence 899999999999999988888 8888899999999999999999 99999999999987653211 34 69
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhh
Q 026910 157 GYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSF 195 (231)
Q Consensus 157 G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~ 195 (231)
|.+++++++++++.|.+..|.. ++||.+..+.+..
T Consensus 153 Gi~~~l~sg~~y~~~~~~~~~~----~~~~~~~~~~~~~ 187 (290)
T TIGR00776 153 GILLLLMSTIGYLVYVVVAKAF----GVDGLSVLLPQAI 187 (290)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc----CCCcceehhHHHH
Confidence 9999999999999999999865 2688887554443
No 30
>PF13536 EmrE: Multidrug resistance efflux transporter
Probab=98.91 E-value=1.2e-08 Score=75.14 Aligned_cols=78 Identities=18% Similarity=0.197 Sum_probs=67.9
Q ss_pred HHHHHHHHHHHHH-HHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecccc
Q 026910 74 MTAKKLLPVSLFY-NANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFS 152 (231)
Q Consensus 74 ~~~~~~~~~~~~~-~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~~ 152 (231)
+....+...++.. .....+...|+++.| +....+.++.|+++++++.+++|||++++++.+++++.+|+++...+|.+
T Consensus 32 ~~~~~~~~~g~~~~~~~~~~~~~a~~~~~-~~v~~i~~~~pi~~~ll~~~~~~er~~~~~~~a~~l~~~Gv~li~~~~~~ 110 (113)
T PF13536_consen 32 KPWLWLILAGLLGFGVAYLLFFYALSYAP-ALVAAIFSLSPIFTALLSWLFFKERLSPRRWLAILLILIGVILIAWSDLT 110 (113)
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHHHHhCc-HHHHHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhhhhcc
Confidence 3445555656665 488999999999999 68889999999999999999999999999999999999999999887654
No 31
>COG2510 Predicted membrane protein [Function unknown]
Probab=98.85 E-value=4.2e-08 Score=72.38 Aligned_cols=132 Identities=11% Similarity=0.116 Sum_probs=107.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHcCCCc-CCCCCHHHHHHHHHHHHHHHHH
Q 026910 12 FLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAG-RQMGYTK-SKAIDLMTAKKLLPVSLFYNAN 89 (231)
Q Consensus 12 ~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ 89 (231)
..+++++++|+... +..|.-+++.+ |.+-+..|.++..+.+... ...|..+ ...+++|.+..+..-|+....+
T Consensus 6 ~~ALLsA~fa~L~~----iF~KIGl~~vd-p~~At~IRtiVi~~~l~~v~~~~g~~~~~~~~~~k~~lflilSGla~gls 80 (140)
T COG2510 6 IYALLSALFAGLTP----IFAKIGLEGVD-PDFATTIRTIVILIFLLIVLLVTGNWQAGGEIGPKSWLFLILSGLAGGLS 80 (140)
T ss_pred HHHHHHHHHHHHHH----HHHHHhccccC-ccHHHHHHHHHHHHHHHHHHHhcCceecccccCcceehhhhHHHHHHHHH
Confidence 46778888888776 45898888765 8888888888887655443 3333333 2346777777778888889999
Q ss_pred HHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhee
Q 026910 90 VAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (231)
Q Consensus 90 ~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~ 148 (231)
-.+.+.+++--.+|...-+-.+.|+++.+++.+++|||++..+|++++++.+|+.+.+.
T Consensus 81 wl~Yf~ALk~G~as~VvPldk~svvl~~lls~lfL~E~ls~~~~iG~~LI~~Gailvs~ 139 (140)
T COG2510 81 WLLYFRALKKGKASRVVPLDKTSVVLAVLLSILFLGERLSLPTWIGIVLIVIGAILVSL 139 (140)
T ss_pred HHHHHHHHhcCCcceEEEcccccHHHHHHHHHHHhcCCCCHHHHHHHHHHHhCeeeEec
Confidence 99999999999999988899999999999999999999999999999999999987653
No 32
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=98.74 E-value=3.4e-06 Score=70.79 Aligned_cols=193 Identities=17% Similarity=0.129 Sum_probs=133.1
Q ss_pred cccCCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH----HHcCCCcCCCC--CHHHHHH
Q 026910 5 TDAEISPFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAG----RQMGYTKSKAI--DLMTAKK 78 (231)
Q Consensus 5 ~~~~~~~~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~----~~~~~~~~~~~--~~~~~~~ 78 (231)
++..++-..++.+-+.||... ++-|.+ +..+ +..+...|.+.+...+.+. ++.+ +.++. +++.+-.
T Consensus 3 ~~~~~Gil~~l~Ay~lwG~lp----~y~kll-~~~~-~~eIlahRviwS~~~~l~ll~~~r~~~--~~~~~~~~p~~~~~ 74 (293)
T COG2962 3 KDSRKGILLALLAYLLWGLLP----LYFKLL-EPLP-ATEILAHRVIWSFPFMLALLFLLRQWR--ELKQLLKQPKTLLM 74 (293)
T ss_pred CcccchhHHHHHHHHHHHHHH----HHHHHH-ccCC-HHHHHHHHHHHHHHHHHHHHHHHhhhH--HHHHHHhCcHHHHH
Confidence 445566677888888888775 556765 3322 4569999999997765443 2222 12121 1223333
Q ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecccccchHHH
Q 026910 79 LLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFSFDLSGY 158 (231)
Q Consensus 79 ~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~~~~~~G~ 158 (231)
....++.-..+-..--+|.+.-.+=....--...|.+.++.+.+++|||.++.+++++.+..+||..-.....++++...
T Consensus 75 ~~l~a~li~~nW~lfiWAvn~g~~leaSLGY~InPL~~VllG~lflkErls~~Q~iAV~lA~~GV~~~~~~~g~lpwval 154 (293)
T COG2962 75 LALTALLIGLNWWLFIWAVNNGHVLEASLGYFINPLVNVLLGRLFLKERLSRLQWIAVGLAAAGVLIQTWLLGSLPWVAL 154 (293)
T ss_pred HHHHHHHHHHHHHHhheecCCCchhHHHhHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence 44445555666666667777766767777888999999999999999999999999999999999998888888886544
Q ss_pred HHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCChHH
Q 026910 159 SMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPG 213 (231)
Q Consensus 159 ~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~~ 213 (231)
.=++.+++|... ||.. +.|+.+-+.--.++-.+..+...+..+|-++
T Consensus 155 ----~la~sf~~Ygl~-RK~~---~v~a~~g~~lE~l~l~p~al~yl~~l~~~~~ 201 (293)
T COG2962 155 ----ALALSFGLYGLL-RKKL---KVDALTGLTLETLLLLPVALIYLLFLADSGQ 201 (293)
T ss_pred ----HHHHHHHHHHHH-HHhc---CCchHHhHHHHHHHHhHHHHHHHHHHhcCch
Confidence 445678899876 4443 4566666665565666666666667766554
No 33
>TIGR00950 2A78 Carboxylate/Amino Acid/Amine Transporter.
Probab=98.66 E-value=3.5e-06 Score=70.37 Aligned_cols=127 Identities=15% Similarity=0.091 Sum_probs=92.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHH-HHHH
Q 026910 12 FLGLFAALSYGVSSMAMVFINKAVIMQYAHS-MTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLF-YNAN 89 (231)
Q Consensus 12 ~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p-~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 89 (231)
...+.+++.|+..+ ...|...++.+.+ .....+++.++.+.+........ +.++.+.+++...+..+++ ....
T Consensus 131 ~~~l~a~~~~a~~~----~~~k~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 205 (260)
T TIGR00950 131 LLGLGSGISFALGT----VLYKRLVKKEGPELLQFTGWVLLLGALLLLPFAWFLG-PNPQALSLQWGALLYLGLIGTALA 205 (260)
T ss_pred HHHHHHHHHHHHHH----HHHhHHhhcCCchHHHHHHHHHHHHHHHHHHHHHhcC-CCCCcchHHHHHHHHHHHHHHHHH
Confidence 34556666666654 4577776655422 34555778888776655433221 2223355555555656655 5678
Q ss_pred HHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhh
Q 026910 90 VAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGC 143 (231)
Q Consensus 90 ~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv 143 (231)
..+.+.++++.+.+...++..+.|++..+++++++||+++..++.+..+++.|+
T Consensus 206 ~~~~~~a~~~~~~~~~s~~~~~~pv~~~ll~~~~~~E~~~~~~~~G~~li~~g~ 259 (260)
T TIGR00950 206 YFLWNKGLTLVDPSAASILALAEPLVALLLGLLILGETLSLPQLIGGALIIAAV 259 (260)
T ss_pred HHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhc
Confidence 889999999999999999999999999999999999999999999999999986
No 34
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=98.59 E-value=1.4e-05 Score=65.81 Aligned_cols=164 Identities=16% Similarity=0.144 Sum_probs=125.1
Q ss_pred HHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHh
Q 026910 32 NKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRL 111 (231)
Q Consensus 32 nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~ 111 (231)
.|-++-..| |-.++++|..++.+++....+.. .+|+++++.+.++..|.....++.+-+.|++.+|.+....+-.+
T Consensus 31 Ak~LFP~vG-~~g~t~lRl~~aaLIll~l~RPw---r~r~~~~~~~~~~~yGvsLg~MNl~FY~si~riPlGiAVAiEF~ 106 (292)
T COG5006 31 AKSLFPLVG-AAGVTALRLAIAALILLALFRPW---RRRLSKPQRLALLAYGVSLGGMNLLFYLSIERIPLGIAVAIEFT 106 (292)
T ss_pred HHHHccccC-hhhHHHHHHHHHHHHHHHHhhHH---HhccChhhhHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhc
Confidence 577755444 56799999999987665543321 25788888899999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhee---cccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhH
Q 026910 112 TPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL---GDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVE 188 (231)
Q Consensus 112 ~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~---~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~ 188 (231)
-|+.+.+++ .+|..-. .-+.+.+.|..+..- +..+.|+.|..+++.+..|+++|.+..||.-+ ..+...
T Consensus 107 GPL~vA~~~----sRr~~d~--vwvaLAvlGi~lL~p~~~~~~~lDp~Gv~~Al~AG~~Wa~YIv~G~r~g~--~~~g~~ 178 (292)
T COG5006 107 GPLAVALLS----SRRLRDF--VWVALAVLGIWLLLPLGQSVWSLDPVGVALALGAGACWALYIVLGQRAGR--AEHGTA 178 (292)
T ss_pred cHHHHHHHh----ccchhhH--HHHHHHHHHHHhheeccCCcCcCCHHHHHHHHHHhHHHHHHHHHcchhcc--cCCCch
Confidence 999988776 3343333 445556677776543 33577999999999999999999999999864 335555
Q ss_pred HHHHHhhhHHHHHHHHHHH
Q 026910 189 IMFYNSFLSLPFLVFLIIV 207 (231)
Q Consensus 189 ~~~y~~~~~~~~l~~~~~~ 207 (231)
-+-+-..+++++.+|+...
T Consensus 179 g~a~gm~vAaviv~Pig~~ 197 (292)
T COG5006 179 GVAVGMLVAALIVLPIGAA 197 (292)
T ss_pred HHHHHHHHHHHHHhhhhhh
Confidence 6666666777777776654
No 35
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=98.54 E-value=5.1e-08 Score=80.61 Aligned_cols=188 Identities=19% Similarity=0.218 Sum_probs=128.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHH-HHHHHHHHHHHHHHHHHH
Q 026910 16 FAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTA-KKLLPVSLFYNANVAFAL 94 (231)
Q Consensus 16 ~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~n 94 (231)
+..+.| ..+.++.+..|.+.. .|..+...|++.-++..+.+.-..+... +.++.. +.+++=++.-.......+
T Consensus 42 l~~vs~-ff~~~~vv~t~~~e~---~p~e~a~~r~l~~mlit~pcliy~~~~v--~gp~g~R~~LiLRg~mG~tgvmlmy 115 (346)
T KOG4510|consen 42 LLTVSY-FFNSCMVVSTKVLEN---DPMELASFRLLVRMLITYPCLIYYMQPV--IGPEGKRKWLILRGFMGFTGVMLMY 115 (346)
T ss_pred ehhhHH-HHhhHHHhhhhhhcc---ChhHhhhhhhhhehhhhheEEEEEeeee--ecCCCcEEEEEeehhhhhhHHHHHH
Confidence 344443 344455565665432 3776666665444444333311110000 111111 223333566667777889
Q ss_pred HhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhe-----eccc---------ccchHHHHH
Q 026910 95 ASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA-----LGDF---------SFDLSGYSM 160 (231)
Q Consensus 95 ~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~-----~~~~---------~~~~~G~~~ 160 (231)
+|++|+|++-+.++-..+|.+|.++++.++||+.++-..+.....+.||++.. +||. +-+.+|-+.
T Consensus 116 ya~~~mslaDA~vItFssPvft~ifaw~~LkE~~t~~eaL~s~itl~GVVLIvRPpFlFG~~t~g~~~s~~~~~~~gt~a 195 (346)
T KOG4510|consen 116 YALMYMSLADAVVITFSSPVFTIIFAWAFLKEPFTKFEALGSLITLLGVVLIVRPPFLFGDTTEGEDSSQVEYDIPGTVA 195 (346)
T ss_pred HHHhhcchhheEEEEecChHHHHHHHHHHHcCCCcHHHHHHHHHhhheEEEEecCCcccCCCccccccccccccCCchHH
Confidence 99999999999999999999999999999999999999999999999999852 2321 335688888
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCCh
Q 026910 161 ALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEF 211 (231)
Q Consensus 161 ~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~ 211 (231)
++.+.++.|---+..|++-| +.+..-.+.|.+..+++..++.....|++
T Consensus 196 ai~s~lf~asvyIilR~iGk--~~h~~msvsyf~~i~lV~s~I~~~~ig~~ 244 (346)
T KOG4510|consen 196 AISSVLFGASVYIILRYIGK--NAHAIMSVSYFSLITLVVSLIGCASIGAV 244 (346)
T ss_pred HHHhHhhhhhHHHHHHHhhc--cccEEEEehHHHHHHHHHHHHHHhhccce
Confidence 88888888877777788854 34666677788888888888877777754
No 36
>KOG4314 consensus Predicted carbohydrate/phosphate translocator [General function prediction only]
Probab=98.37 E-value=1.8e-06 Score=68.70 Aligned_cols=110 Identities=20% Similarity=0.239 Sum_probs=100.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecc--ccc
Q 026910 76 AKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD--FSF 153 (231)
Q Consensus 76 ~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~--~~~ 153 (231)
.++..|.+++..+..+....+++.++.+..+.+-.+.-.|+.+++++.+|+|+..-++++.++.+.|+++.++.| ...
T Consensus 53 ~~~taPF~i~Wt~aNY~Yl~AL~~is~s~asai~~CNaAFVfiLa~IVL~D~~~~~kIlaailAI~GiVmiay~DN~~a~ 132 (290)
T KOG4314|consen 53 FIRTAPFSIFWTGANYLYLLALKKISASDASAIFACNAAFVFILAIIVLGDRFMGFKILAAILAIGGIVMIAYADNEHAD 132 (290)
T ss_pred eeeecceEEEEecCCcHHHHHHHhcChhhhHHHHHhhHHHHHHHHHHHhccchhhhhHHHHHHHhCcEEEEEeccchhhh
Confidence 456778899999999999999999999999999999999999999999999999999999999999999998754 456
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC
Q 026910 154 DLSGYSMALTSVFFQTMYLVLVEKSGAEDGLS 185 (231)
Q Consensus 154 ~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~ 185 (231)
++.|...++.|+...|+|.+.-|+...+.++.
T Consensus 133 e~iGi~~AV~SA~~aAlYKV~FK~~iGnAn~G 164 (290)
T KOG4314|consen 133 EIIGIACAVGSAFMAALYKVLFKMFIGNANFG 164 (290)
T ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHhccCcch
Confidence 79999999999999999999999998765543
No 37
>PRK15051 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnE; Provisional
Probab=98.35 E-value=7e-06 Score=60.23 Aligned_cols=65 Identities=15% Similarity=0.058 Sum_probs=61.0
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhee
Q 026910 84 LFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (231)
Q Consensus 84 ~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~ 148 (231)
+.+..+..+...+++.+|++.+-.+.++.++.+.+.+++++||++++++++++.++++|+++.+.
T Consensus 45 ~~~~l~~~~~~~al~~iplg~Ay~~~~l~~v~~~~~~~l~f~E~ls~~~~~Gi~lii~Gv~~i~~ 109 (111)
T PRK15051 45 ACLGLAMVLWLLVLQNVPVGIAYPMLSLNFVWVTLAAVKLWHEPVSPRHWCGVAFIIGGIVILGS 109 (111)
T ss_pred HHHHHHHHHHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhc
Confidence 45888999999999999999999999999999999999999999999999999999999987643
No 38
>PLN00411 nodulin MtN21 family protein; Provisional
Probab=98.33 E-value=3.7e-05 Score=67.76 Aligned_cols=131 Identities=11% Similarity=0.094 Sum_probs=89.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHc--CC-Cc--CCCCCHHHHHHHHHHHHHHH
Q 026910 13 LGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQM--GY-TK--SKAIDLMTAKKLLPVSLFYN 87 (231)
Q Consensus 13 ~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~--~~-~~--~~~~~~~~~~~~~~~~~~~~ 87 (231)
..+.+++.|++.++ ..|-....++.+...++++..+..+.+.+.... +. .+ ....+... ..++-.++...
T Consensus 193 l~l~aa~~wa~~~i----l~~~~~~~~~~~~~~t~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~-~~i~y~~i~t~ 267 (358)
T PLN00411 193 LLTIQGIFVSVSFI----LQAHIMSEYPAAFTVSFLYTVCVSIVTSMIGLVVEKNNPSVWIIHFDITL-ITIVTMAIITS 267 (358)
T ss_pred HHHHHHHHHHHHHH----HHHHHHHHcCcHhHHHHHHHHHHHHHHHHHHHHHccCCcccceeccchHH-HHHHHHHHHHH
Confidence 34455666665543 345555666544467777877775544322111 10 01 11122221 12333444455
Q ss_pred HHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhee
Q 026910 88 ANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (231)
Q Consensus 88 ~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~ 148 (231)
+...++|+++++.+.+...+...+.|++.++.++++++|++++.++++.++++.|+.++..
T Consensus 268 lay~lw~~~v~~~ga~~as~~~~L~PV~a~llg~l~LgE~lt~~~~iG~~LIl~Gv~l~~~ 328 (358)
T PLN00411 268 VYYVIHSWTVRHKGPLYLAIFKPLSILIAVVMGAIFLNDSLYLGCLIGGILITLGFYAVMW 328 (358)
T ss_pred HHHHHHHHHHhccCchHHHHHHhHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 6777899999999999999999999999999999999999999999999999999999765
No 39
>PRK11272 putative DMT superfamily transporter inner membrane protein; Provisional
Probab=98.30 E-value=7.1e-05 Score=64.01 Aligned_cols=134 Identities=15% Similarity=0.139 Sum_probs=95.8
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCcC-CCCCHHHHHHHHHHHHH-HHHH
Q 026910 12 FLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKS-KAIDLMTAKKLLPVSLF-YNAN 89 (231)
Q Consensus 12 ~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-~~~~ 89 (231)
...+++.+.|+..++ .+|..- . +.+...+.+|+.++...+........... ...+.+.+..+...+++ ....
T Consensus 153 l~~l~a~~~~a~~~~----~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~i~~s~~~ 226 (292)
T PRK11272 153 ILILIASASWAFGSV----WSSRLP-L-PVGMMAGAAEMLAAGVVLLIASLLSGERLTALPTLSGFLALGYLAVFGSIIA 226 (292)
T ss_pred HHHHHHHHHHHHHHH----HHHhcC-C-CcchHHHHHHHHHHHHHHHHHHHHcCCcccccCCHHHHHHHHHHHHHHHHHH
Confidence 455566666666653 355532 2 23555678888888775544432211111 12344555555666665 5677
Q ss_pred HHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheeccc
Q 026910 90 VAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF 151 (231)
Q Consensus 90 ~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~ 151 (231)
..+.+.++++.+.+...++..+.|++.++.++++++|+++..++++.++++.|+.+....+.
T Consensus 227 ~~l~~~~~~~~~~~~~s~~~~l~Pi~a~i~~~~~l~E~~t~~~iiG~~lIi~gv~~~~~~~~ 288 (292)
T PRK11272 227 ISAYMYLLRNVRPALATSYAYVNPVVAVLLGTGLGGETLSPIEWLALGVIVFAVVLVTLGKY 288 (292)
T ss_pred HHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999999999999999999999999999999999999999999998765443
No 40
>PRK10532 threonine and homoserine efflux system; Provisional
Probab=98.16 E-value=0.00034 Score=59.91 Aligned_cols=130 Identities=12% Similarity=0.073 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHH-HHHHH
Q 026910 12 FLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLF-YNANV 90 (231)
Q Consensus 12 ~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 90 (231)
...+.+.+.|+..+ ...|...++.+ |... .++..++.+.+........ .....++..+...+..+++ ..+..
T Consensus 151 ll~l~aa~~~a~~~----v~~r~~~~~~~-~~~~-~~~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~~l~lgv~~t~~~~ 223 (293)
T PRK10532 151 ALALGAGACWAIYI----LSGQRAGAEHG-PATV-AIGSLIAALIFVPIGALQA-GEALWHWSILPLGLAVAILSTALPY 223 (293)
T ss_pred HHHHHHHHHHHHHH----HHHHHHhccCC-chHH-HHHHHHHHHHHHHHHHHcc-CcccCCHHHHHHHHHHHHHHHHHHH
Confidence 34555566666554 44565544433 4444 3444554443333222111 1112333333333455555 46677
Q ss_pred HHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhee
Q 026910 91 AFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (231)
Q Consensus 91 ~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~ 148 (231)
.+.|.++++.+.+...+.-.+.|++..+.++++++|+++..++++..+++.|++....
T Consensus 224 ~l~~~~~~~~~a~~as~~~~l~Pv~a~l~~~l~lgE~~~~~~~iG~~lIl~~~~~~~~ 281 (293)
T PRK10532 224 SLEMIALTRLPTRTFGTLMSMEPALAAVSGMIFLGETLTLIQWLALGAIIAASMGSTL 281 (293)
T ss_pred HHHHHHHHhcChhHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHh
Confidence 7889999999999999999999999999999999999999999999999999998744
No 41
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.15 E-value=9.7e-06 Score=62.30 Aligned_cols=59 Identities=27% Similarity=0.386 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhcCC-----CCCChhHHHHHHhhhHHHHHHHHHHHhCChHHHH
Q 026910 157 GYSMALTSVFFQTMYLVLVEKSGAE-----DGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSL 215 (231)
Q Consensus 157 G~~~~l~s~~~~a~~~v~~~~~~~~-----~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~~~~ 215 (231)
|+++++.|++++|+|+++.|+.+++ .+.++.++++|+++.+.++++|.++..|+.+...
T Consensus 1 G~~~~l~s~~~~al~~v~~~~~~~~~~~~~~~~~~~~l~~~~~~~s~~~l~~~~~~~e~~~~~~ 64 (153)
T PF03151_consen 1 GFILALASSLFSALRNVLIKKLLKKVSSNSKKLNPLNLLYYNSPISFIILLPLAFLLEGPQLSS 64 (153)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCHHHHHHHHHHHHHHHHHHHHHHHhhhhhhh
Confidence 7899999999999999999998877 6899999999999999999999999996655333
No 42
>PRK11689 aromatic amino acid exporter; Provisional
Probab=98.10 E-value=0.00029 Score=60.39 Aligned_cols=129 Identities=13% Similarity=0.036 Sum_probs=87.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHHHHHHH
Q 026910 12 FLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNANVA 91 (231)
Q Consensus 12 ~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (231)
...+.+++.|...+ +.+|..-++.+ |... .+...+..+.......+. .....+++.+..++..++.......
T Consensus 159 ~~~l~aa~~~A~~~----v~~k~~~~~~~-~~~~--~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~~~~~~t~~~~~ 230 (295)
T PRK11689 159 GLAFIGAFIWAAYC----NVTRKYARGKN-GITL--FFILTALALWIKYFLSPQ-PAMVFSLPAIIKLLLAAAAMGFGYA 230 (295)
T ss_pred HHHHHHHHHHHHHH----HHHhhccCCCC-chhH--HHHHHHHHHHHHHHHhcC-ccccCCHHHHHHHHHHHHHHHHHHH
Confidence 34555566666554 44565544433 4332 222222222221111111 1223555555555556666677888
Q ss_pred HHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhee
Q 026910 92 FALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (231)
Q Consensus 92 ~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~ 148 (231)
+++.++++.+.+.....-.+.|++..+.++++++|+++..++++.++++.|+.+...
T Consensus 231 l~~~al~~~~a~~~s~~~~l~Pv~a~i~~~~~lgE~~~~~~~iG~~lI~~gv~~~~~ 287 (295)
T PRK11689 231 AWNVGILHGNMTLLATASYFTPVLSAALAALLLSTPLSFSFWQGVAMVTAGSLLCWL 287 (295)
T ss_pred HHHHHHHccCHHHHHHHHHhHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHhHHHHhh
Confidence 999999999999999999999999999999999999999999999999999987643
No 43
>PRK11453 O-acetylserine/cysteine export protein; Provisional
Probab=98.08 E-value=0.00053 Score=58.82 Aligned_cols=133 Identities=18% Similarity=0.179 Sum_probs=89.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH--HHHHHHHHHHHHHHHHHH-H-cCCC----cCCCCCHHHHHHHHHHHH
Q 026910 13 LGLFAALSYGVSSMAMVFINKAVIMQYAHSM--TLLTLQQLATALLIQAGR-Q-MGYT----KSKAIDLMTAKKLLPVSL 84 (231)
Q Consensus 13 ~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~--~l~~~q~~~~~~~~~~~~-~-~~~~----~~~~~~~~~~~~~~~~~~ 84 (231)
..+.+.+.|+..++ ..|...++++.|. ....+++..+.+...... . .+.. +....+.+.+..++-+++
T Consensus 147 l~l~aal~~a~~~v----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~i 222 (299)
T PRK11453 147 LTLAAAFSWACGNI----FNKKIMSHSTRPAVMSLVVWSALIPIIPFFVASLILDGSATMIHSLVTIDMTTILSLMYLAF 222 (299)
T ss_pred HHHHHHHHHHHHHH----HHHHHhcccCccchhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhhccCCHHHHHHHHHHHH
Confidence 34555556665543 4555444443332 344556655544322211 1 1110 112345555666666665
Q ss_pred H-HHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheec
Q 026910 85 F-YNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG 149 (231)
Q Consensus 85 ~-~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~ 149 (231)
+ ......+.+.++++.+......+-.+.|++..+.++++++|+++..++++.+++++|+.+...+
T Consensus 223 ~~t~~~~~l~~~~l~~~~a~~~s~~~~l~Pv~a~~~~~l~lgE~~~~~~~iG~~lI~~gv~l~~~~ 288 (299)
T PRK11453 223 VATIVGYGIWGTLLGRYETWRVAPLSLLVPVVGLASAALLLDERLTGLQFLGAVLIMAGLYINVFG 288 (299)
T ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHhcc
Confidence 4 4667788999999999999999999999999999999999999999999999999999987543
No 44
>TIGR03340 phn_DUF6 phosphonate utilization associated putative membrane protein. This family of hydrophobic proteins has some homology to families of integral membrane proteins such as (pfam00892) and may be a permease. It occurs in the vicinity of various types of operons for the catabolism of phosphonates in Vibrio, Pseudomonas, Polaromonas and Thiomicrospira.
Probab=98.03 E-value=5.9e-05 Score=64.13 Aligned_cols=67 Identities=13% Similarity=0.174 Sum_probs=59.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhh
Q 026910 79 LLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 145 (231)
Q Consensus 79 ~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l 145 (231)
....++.......+.+.++++.+.+.......+.|++..+.+++++||++++.++++..+++.|+.+
T Consensus 214 ~~~~~~~s~l~~~l~~~al~~~~a~~~~~~~~l~pv~a~l~g~~~lgE~~~~~~~iG~~lil~Gv~l 280 (281)
T TIGR03340 214 ATLGGLMIGGAYALVLWAMTRLPVATVVALRNTSIVFAVVLGIWFLNERWYLTRLMGVCIIVAGLVV 280 (281)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCceEEEeecccHHHHHHHHHHHHhCCCccHHHHHHHHHHHHhHHh
Confidence 3334455677788999999999999999999999999999999999999999999999999999875
No 45
>PF03151 TPT: Triose-phosphate Transporter family; InterPro: IPR004853 This family consists entirely of aligned regions from Drosophila melanogaster proteins. O49724 from SWISSPROT contains three repeats of this region. In other proteins, the aligned region is located towards the C terminus. The function of the aligned region is unknown.
Probab=98.02 E-value=0.0005 Score=52.66 Aligned_cols=74 Identities=11% Similarity=0.040 Sum_probs=66.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhe
Q 026910 74 MTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 147 (231)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~ 147 (231)
+....++..+++.......+...++++|.-.++++...+.+.+.+.+.++++|+++..++.++.+.+.|+.+.+
T Consensus 79 ~~~~~~~~~~~~~~~~n~~~f~~i~~tS~lt~~v~~~~K~~~~i~~s~~~f~~~~t~~~~~G~~l~~~G~~~Ys 152 (153)
T PF03151_consen 79 NFIFLLILSGLLAFLYNLSSFLLIKLTSPLTYSVLGNVKRILVILLSVIFFGEPITPLQIIGIVLALVGVLLYS 152 (153)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcChhHHHHHHHHHHHHHHHHHhhhcCCcCCHHHHHHHHHHHHHHheee
Confidence 34455566677788889999999999999999999999999999999999999999999999999999998654
No 46
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=98.00 E-value=2.3e-05 Score=64.29 Aligned_cols=100 Identities=22% Similarity=0.330 Sum_probs=77.2
Q ss_pred CChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheeccc---------------------------c
Q 026910 100 VNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF---------------------------S 152 (231)
Q Consensus 100 ~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~---------------------------~ 152 (231)
+++|.....|+..++++++.+....++|++..++++..++..|+.....+|. .
T Consensus 2 isvPa~~~~~s~~l~~v~l~~~~~~~~~~~~~~i~~~~l~~~g~l~~~ls~~q~~al~~l~~~~~~~~~~~~~~~~~~~g 81 (222)
T TIGR00803 2 LSVPIHIIFKQNNLVLIALGNLLAAGKQVTQLKILSTALMTLGSLVASLGDDQWFSLKLLKLGVAIVQMVQSSAKTLMFG 81 (222)
T ss_pred ccccchHHHHhcchHHHHHhcccccceeeehHHHHHHHHHHHHHHHhHhhHHHHHHHHHHHHhHeeeecCCCCccccccc
Confidence 5889999999999999999999999999999999999999999986433221 1
Q ss_pred cchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHH
Q 026910 153 FDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFL 204 (231)
Q Consensus 153 ~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~ 204 (231)
..+.|....+.++.++++-.+++|+..++++.+ +|.+..+..+..+.
T Consensus 82 ~~~~g~~~~l~a~~~~~~~~~y~e~~~k~~~~~-----~~~~~~~l~~~~~~ 128 (222)
T TIGR00803 82 NPVVGLSAVLSALLSSGFAGVYFEKILKDGDTM-----FWSRNLQLPLFGLF 128 (222)
T ss_pred cHHHHHHHHHHHHHHHhhhHHHHHHcccCCCCc-----hHHHHHHHHHHHHH
Confidence 235777778888889999999999987654433 55544444444433
No 47
>TIGR00817 tpt Tpt phosphate/phosphoenolpyruvate translocator. specificities overlap.
Probab=97.99 E-value=0.00014 Score=62.33 Aligned_cols=134 Identities=11% Similarity=0.119 Sum_probs=85.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHHHHHHHH-cCCCcCCC---------CCHHHHHH-HH
Q 026910 14 GLFAALSYGVSSMAMVFINKAVIM--QYAHSMTLLTLQQLATALLIQAGRQ-MGYTKSKA---------IDLMTAKK-LL 80 (231)
Q Consensus 14 ~~~~~~~~~~~s~~~~~~nK~ll~--~~~~p~~l~~~q~~~~~~~~~~~~~-~~~~~~~~---------~~~~~~~~-~~ 80 (231)
+.+.++.-.++........|...+ +++ |..++.+|+..+.+.+.+... .+..+... ........ .+
T Consensus 146 G~~~~l~a~~~~a~~~v~~k~~~~~~~~~-~~~~~~~~~~~~~~~l~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 224 (302)
T TIGR00817 146 GFLSAMISNITFVSRNIFSKKAMTIKSLD-KTNLYAYISIMSLFLLSPPAFITEGPPFLPHGFMQAISGVNVTKIYTVSL 224 (302)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhccCCCC-cccHHHHHHHHHHHHHHHHHHHHcchHHHHHHHHHhhcccCchHHHHHHH
Confidence 433344334443344455676666 333 667889999888765544321 11101000 00001111 11
Q ss_pred HHHH-HHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhee
Q 026910 81 PVSL-FYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (231)
Q Consensus 81 ~~~~-~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~ 148 (231)
..+. .+.......+.++++++...+.+.-...|+++.+.++++++|+++..++++..+++.|+.+...
T Consensus 225 ~~~~~~~~~~~~~~~~~l~~~sa~t~sv~~~l~pv~~~~~~~~~lge~lt~~~~~G~~lil~Gv~l~~~ 293 (302)
T TIGR00817 225 VAAMGFFHFYQQVAFMLLGRVSPLTHSVGNCMKRVVVIVVSILFFGTKISPQQVFGTGIAIAGVFLYSR 293 (302)
T ss_pred HHHHHHHHHHHHHHHHHHccCCchHHHHHhhhhhhheeeeehhhcCCCCchhHHHHHHHHHHHHHHHHH
Confidence 2222 2333335666899999999999999999999999999999999999999999999999998754
No 48
>TIGR00776 RhaT RhaT L-rhamnose-proton symporter family protein. These proteins are members of the L-Rhamnose Symporter (RhaT) Family (TC 2.A.7). This family includes two characterized members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.
Probab=97.97 E-value=0.00032 Score=60.07 Aligned_cols=128 Identities=15% Similarity=0.188 Sum_probs=90.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHH----HHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHHHH
Q 026910 13 LGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQL----ATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYNA 88 (231)
Q Consensus 13 ~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (231)
+++...+.=+++.......+|.. +++ |...++.|.. .+.+.....+ +.++.+.+.....+..|++...
T Consensus 152 ~Gi~~~l~sg~~y~~~~~~~~~~--~~~-~~~~~~~~~~g~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~Gi~~~i 223 (290)
T TIGR00776 152 KGILLLLMSTIGYLVYVVVAKAF--GVD-GLSVLLPQAIGMVIGGIIFNLGHI-----LAKPLKKYAILLNILPGLMWGI 223 (290)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHc--CCC-cceehhHHHHHHHHHHHHHHHHHh-----cccchHHHHHHHHHHHHHHHHH
Confidence 44444444444444555667865 232 5656555554 4444433332 1122233444455557888877
Q ss_pred HHHHHHHhcc-CCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHH----HHHHHHHhhhhhhee
Q 026910 89 NVAFALASLK-GVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVT----LSVLLTATGCVIAAL 148 (231)
Q Consensus 89 ~~~~~n~sl~-~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~----~s~~l~~~Gv~l~~~ 148 (231)
...+...+++ +++.+.+.++-...|+...+.+.+++||+.+++++ ++.++++.|+.+...
T Consensus 224 a~~~y~~~~~~~~~~~~~~~ls~~~pvia~~~~v~~l~E~~~~~~~~~~~iG~~lIi~~~~l~~~ 288 (290)
T TIGR00776 224 GNFFYLFSAQPKVGVATSFSLSQLGVIISTLGGILILGEKKTKREMIAISVGIILIIIAANILGI 288 (290)
T ss_pred HHHHHHHHcccccchhhHHHHHHHHHHHHHHHHHHHhccCCCcceeehhHHHHHHHHHHHHHHhc
Confidence 7888889999 99999999999999999999999999999999999 999999999987654
No 49
>PRK02971 4-amino-4-deoxy-L-arabinose-phosphoundecaprenol flippase subunit ArnF; Provisional
Probab=97.87 E-value=0.00032 Score=52.84 Aligned_cols=70 Identities=16% Similarity=0.092 Sum_probs=61.8
Q ss_pred HHHH-HHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHH--hcCCCCChHHHHHHHHHHhhhhhheec
Q 026910 80 LPVS-LFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFF--SGKGKPTTQVTLSVLLTATGCVIAALG 149 (231)
Q Consensus 80 ~~~~-~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~--~~~~~~s~~~~~s~~l~~~Gv~l~~~~ 149 (231)
+..+ +.|..+..+++.+++..|++.+--..+..++.+.+.++. ++||++++.+++++.++++|+.+...+
T Consensus 51 i~lgl~~~~la~~~w~~aL~~~~ls~Ayp~~sl~~~~v~~~~~~~~~~~E~ls~~~~iGi~lIi~GV~lv~~~ 123 (129)
T PRK02971 51 VLLGLAGYALSMLCWLKALRYLPLSRAYPLLSLSYALVYLAAMLLPWFNETFSLKKTLGVACIMLGVWLINLP 123 (129)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHhccC
Confidence 3444 468999999999999999999999999998888888885 899999999999999999999987654
No 50
>PRK15430 putative chloramphenical resistance permease RarD; Provisional
Probab=97.84 E-value=0.0014 Score=56.08 Aligned_cols=68 Identities=9% Similarity=0.075 Sum_probs=60.9
Q ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhh
Q 026910 79 LLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 146 (231)
Q Consensus 79 ~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~ 146 (231)
....++.......+.+.++++.+.+.........|++..+.++++++|+++..++.+.++++.|+.+.
T Consensus 216 ~~~~g~~t~i~~~~~~~a~~~~~a~~~s~~~~l~Pv~a~~~g~l~l~E~~~~~~~~G~~lI~~~~~v~ 283 (296)
T PRK15430 216 LIAAGIVTTVPLLCFTAAATRLRLSTLGFFQYIGPTLMFLLAVTFYGEKPGADKMVTFAFIWVALAIF 283 (296)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 44445566678889999999999999999999999999999999999999999999999998887765
No 51
>PRK10452 multidrug efflux system protein MdtJ; Provisional
Probab=97.65 E-value=0.00046 Score=51.22 Aligned_cols=71 Identities=10% Similarity=0.085 Sum_probs=63.2
Q ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHH-HhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheec
Q 026910 79 LLPVSLFYNANVAFALASLKGVNIPMYIAIK-RLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG 149 (231)
Q Consensus 79 ~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk-~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~ 149 (231)
....-++|..+.++...+++++|++.+-.+- ..-.+.+.+.+.+++||++++.+++++.++++|+......
T Consensus 33 ~~~~i~~~~~sf~~ls~al~~lplsiAYavw~GiG~v~~~~ig~~~f~E~~s~~~~~gi~lIi~GVi~l~l~ 104 (120)
T PRK10452 33 FILMLVMISLSYIFLSFAVKKIALGVAYALWEGIGILFITLFSVLLFDESLSLMKIAGLTTLVAGIVLIKSG 104 (120)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhhcC
Confidence 4556678999999999999999999987774 6899999999999999999999999999999999987553
No 52
>PTZ00343 triose or hexose phosphate/phosphate translocator; Provisional
Probab=97.63 E-value=0.0032 Score=55.37 Aligned_cols=135 Identities=14% Similarity=0.125 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCC-----Cc-HHHHHHHHHHHHHHHHHHHH-cCCCc-----------CCCCCH-
Q 026910 13 LGLFAALSYGVSSMAMVFINKAVIMQYA-----HS-MTLLTLQQLATALLIQAGRQ-MGYTK-----------SKAIDL- 73 (231)
Q Consensus 13 ~~~~~~~~~~~~s~~~~~~nK~ll~~~~-----~p-~~l~~~q~~~~~~~~~~~~~-~~~~~-----------~~~~~~- 73 (231)
.+.+.++.-.++...-....|.++++.+ .+ ..+..++..++.+++..... ....+ ......
T Consensus 194 ~G~~~~l~s~~~~a~~~i~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lp~~~~~e~~~~~~~~~~~~~~~~~~~~~ 273 (350)
T PTZ00343 194 LAFWCAMLSNLGSSLRSIFAKKTMKNKSEIGENLTASNIYMLLTLIASLISLPLVLFFEGKKWVPVWTNYTANMTNYTKG 273 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcccccccccCCHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhhhcccccchH
Confidence 3444444444444455566777776542 22 33555666666655433211 10000 001111
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhe
Q 026910 74 MTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 147 (231)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~ 147 (231)
......+..++.+.....++..+++.++...+.+.-.+.|+++.+.++++++|+++..++++.++++.|+.+.+
T Consensus 274 ~~l~~i~~s~l~~~l~n~~~f~~l~~~s~~t~sv~~~lk~V~~iv~s~l~~ge~lt~~~~iG~~lii~Gv~lYs 347 (350)
T PTZ00343 274 IIIFKIFFSGVWYYLYNEVAFYCLGKVNQVTHAVANTLKRVVIIVSSIIIFQTQVTLLGYLGMAVAILGALLYS 347 (350)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhhhHHHhCCCCchHhHHHHHHHHHHHHHHh
Confidence 11111222223334444444469999999999999999999999999999999999999999999999998764
No 53
>COG0697 RhaT Permeases of the drug/metabolite transporter (DMT) superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / General function prediction only]
Probab=97.61 E-value=0.0083 Score=50.24 Aligned_cols=130 Identities=21% Similarity=0.161 Sum_probs=89.6
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHH-HHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHHH-HH
Q 026910 12 FLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLT-LQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYN-AN 89 (231)
Q Consensus 12 ~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~-~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~ 89 (231)
..++.+.+.|+.. ...+|.+. +. .+..... +++. ..............+ .+.+.+.+......+++.. ..
T Consensus 157 ~~~l~a~~~~a~~----~~~~~~~~-~~-~~~~~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~g~~~~~i~ 228 (292)
T COG0697 157 LLALAAALLWALY----TALVKRLS-RL-GPVTLALLLQLL-LALLLLLLFFLSGFG-APILSRAWLLLLYLGVFSTGLA 228 (292)
T ss_pred HHHHHHHHHHHHH----HHHHHHhc-CC-ChHHHHHHHHHH-HHHHHHHHHHhcccc-ccCCHHHHHHHHHHHHHHHHHH
Confidence 3455556666633 34566655 32 2333333 5555 222222222221111 2345556666777777655 58
Q ss_pred HHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheec
Q 026910 90 VAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG 149 (231)
Q Consensus 90 ~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~ 149 (231)
..+.+.+++..+.+.......+.|++..+.++++++|+++..++.+..+++.|+.+....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~l~~~e~~~~~~~~G~~li~~g~~l~~~~ 288 (292)
T COG0697 229 YLLWYYALRLLGASLVALLSLLEPVFAALLGVLLLGEPLSPAQLLGAALVVLGVLLASLR 288 (292)
T ss_pred HHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 889999999999999999999999999999999999999999999999999999987544
No 54
>PRK11431 multidrug efflux system protein; Provisional
Probab=97.59 E-value=0.0018 Score=46.97 Aligned_cols=70 Identities=13% Similarity=0.106 Sum_probs=60.4
Q ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHHH-hHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhee
Q 026910 79 LLPVSLFYNANVAFALASLKGVNIPMYIAIKR-LTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (231)
Q Consensus 79 ~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~-~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~ 148 (231)
....-+.+..+.++-..+++.+|++.+-.+-. .-.+.+.+.+.+++||+.++.+++++.++++|+.....
T Consensus 32 ~~~~i~~~~~sf~~Ls~al~~ip~gvaYAvW~GiG~v~~~lig~~~f~e~~~~~~~~gi~lIi~GVv~l~l 102 (105)
T PRK11431 32 SIITVTAMIVSMALLAWAMKSLPVGTAYAVWTGIGAVGAAITGIVLLGESASPARLLSLALIVAGIIGLKL 102 (105)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCcHhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhhc
Confidence 34456678999999999999999998665555 78888999999999999999999999999999997643
No 55
>PRK09541 emrE multidrug efflux protein; Reviewed
Probab=97.54 E-value=0.0019 Score=47.27 Aligned_cols=70 Identities=11% Similarity=0.090 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHH-hHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheec
Q 026910 80 LPVSLFYNANVAFALASLKGVNIPMYIAIKR-LTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG 149 (231)
Q Consensus 80 ~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~-~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~ 149 (231)
...-+.|..+.++...+++.+|++.+-.+.. ...+.+.+.+.+++||+.++.+++++.++++|+......
T Consensus 34 i~~~~~~~~sf~~l~~al~~ipl~iAYavw~GlG~v~~~l~g~~~f~e~~~~~~~~gi~lIi~GVi~l~l~ 104 (110)
T PRK09541 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLVINLL 104 (110)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 3445678889999999999999999888854 788889999999999999999999999999999987543
No 56
>KOG2766 consensus Predicted membrane protein [Function unknown]
Probab=97.48 E-value=6.1e-06 Score=68.12 Aligned_cols=128 Identities=13% Similarity=0.120 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecccc--
Q 026910 75 TAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDFS-- 152 (231)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~~-- 152 (231)
.+++++++++.-+-..++-..|.+|++....+.+-.-..+.+++.+++++|.|..+.++.+++.-+.|+.+...+|..
T Consensus 77 ~~~hYilla~~DVEaNy~vV~AyQyTsmtSi~lLDcwaip~v~~lsw~fLktrYrlmki~gV~iCi~GvvmvV~sDV~ag 156 (336)
T KOG2766|consen 77 KWRHYILLAFVDVEANYFVVKAYQYTSMTSIMLLDCWAIPCVLVLSWFFLKTRYRLMKISGVVICIVGVVMVVFSDVHAG 156 (336)
T ss_pred HHHHhhheeEEeecccEEEeeehhhcchHHHHHHHHhhhHHHHHHHHHHHHHHHhhheeeeEEeEecceEEEEEeeeccc
Confidence 445677777776666666778999999999999999999999999999999999999999999999999988765542
Q ss_pred -----cc-hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHH
Q 026910 153 -----FD-LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFL 204 (231)
Q Consensus 153 -----~~-~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~ 204 (231)
.| ..|.++.++++-++|.-++..+.+-+ +.|..+++-...++++++..+=
T Consensus 157 d~aggsnp~~GD~lvi~GATlYaVSNv~EEflvk--n~d~~elm~~lgLfGaIIsaIQ 212 (336)
T KOG2766|consen 157 DRAGGSNPVKGDFLVIAGATLYAVSNVSEEFLVK--NADRVELMGFLGLFGAIISAIQ 212 (336)
T ss_pred cccCCCCCccCcEEEEecceeeeeccccHHHHHh--cCcHHHHHHHHHHHHHHHHHHH
Confidence 23 58999999999999999999888864 5688999999988888887765
No 57
>PRK10650 multidrug efflux system protein MdtI; Provisional
Probab=97.48 E-value=0.003 Score=46.04 Aligned_cols=68 Identities=16% Similarity=0.132 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHHH-HhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhh
Q 026910 79 LLPVSLFYNANVAFALASLKGVNIPMYIAIK-RLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 146 (231)
Q Consensus 79 ~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk-~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~ 146 (231)
....-+.+..+.++-..+++++|++.+=.+- ..-.+.+.+.+.+++||+.++.+++++.++++|+...
T Consensus 38 ~~~~~~~~~~sf~~Ls~al~~lpvgvAYAvW~GiG~v~~~~ig~~~f~e~~~~~~~~gi~lIi~GVi~l 106 (109)
T PRK10650 38 GILSLAAVLAAFSALSQAVKGIDLSVAYALWGGFGIAATLAAGWILFGQRLNRKGWIGLVLLLAGMVMI 106 (109)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHh
Confidence 4445667888999999999999999865554 4777889999999999999999999999999999865
No 58
>COG2076 EmrE Membrane transporters of cations and cationic drugs [Inorganic ion transport and metabolism]
Probab=97.44 E-value=0.002 Score=46.45 Aligned_cols=72 Identities=13% Similarity=0.087 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHH-HHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheec
Q 026910 78 KLLPVSLFYNANVAFALASLKGVNIPMY-IAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG 149 (231)
Q Consensus 78 ~~~~~~~~~~~~~~~~n~sl~~~sv~~~-~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~ 149 (231)
.....-+.+..+..+-..|++++|++.+ .+--..-.+.+.+.+++++||+.+..+++++.+++.|+......
T Consensus 32 ~~il~~v~~~~sf~~Ls~alk~ipvgvAYAiW~GiG~v~~~l~g~~~f~E~l~~~~~~gl~LiiaGvi~Lk~~ 104 (106)
T COG2076 32 PSILTIVGYGLSFYLLSLALKTIPLGVAYAIWTGIGIVGTALVGVLLFGESLSLIKLLGLALILAGVIGLKLG 104 (106)
T ss_pred hHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHHhcCCcCCHHHHHHHHHHHHHHHHhhhc
Confidence 3444567789999999999999999985 44556677889999999999999999999999999999876543
No 59
>PF06027 DUF914: Eukaryotic protein of unknown function (DUF914); InterPro: IPR009262 This family consists of several hypothetical proteins of unknown function. Some of the sequences in this family are annotated as putative membrane proteins.
Probab=97.40 E-value=0.0045 Score=54.01 Aligned_cols=134 Identities=14% Similarity=0.111 Sum_probs=88.6
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHH---HHHHHHHHHHHHHHHHHHcCCCcCCCCCH--HHHHHHHHHHH
Q 026910 10 SPFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMT---LLTLQQLATALLIQAGRQMGYTKSKAIDL--MTAKKLLPVSL 84 (231)
Q Consensus 10 ~~~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~---l~~~q~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~ 84 (231)
+-...+..+.+|++.++. .|+...+.+-... +..+.++++.+.+.+..+. +..+++| +....++..++
T Consensus 169 GDll~l~~a~lya~~nV~----~E~~v~~~~~~~~lg~~Glfg~ii~~iq~~ile~~---~i~~~~w~~~~~~~~v~~~~ 241 (334)
T PF06027_consen 169 GDLLALLGAILYAVSNVL----EEKLVKKAPRVEFLGMLGLFGFIISGIQLAILERS---GIESIHWTSQVIGLLVGYAL 241 (334)
T ss_pred hHHHHHHHHHHHHHHHHH----HHHhcccCCHHHHHHHHHHHHHHHHHHHHHheehh---hhhccCCChhhHHHHHHHHH
Confidence 335667788888888754 5667766442222 4455555555444333222 2223333 32222222233
Q ss_pred HHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecc
Q 026910 85 FYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD 150 (231)
Q Consensus 85 ~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~ 150 (231)
.......+....+++.+..+..+--.++.+..++++.+++|+++++.-+++.+++++|.++....+
T Consensus 242 ~lf~~y~l~p~~l~~ssAt~~nLsLLTsd~~ali~~i~~f~~~~~~ly~~af~lIiiG~vvy~~~~ 307 (334)
T PF06027_consen 242 CLFLFYSLVPIVLRMSSATFFNLSLLTSDFYALIIDIFFFGYKFSWLYILAFALIIIGFVVYNLAE 307 (334)
T ss_pred HHHHHHHHHHHHHHhCccceeehHHHHhhHHHHHHHHHhcCccccHHHHHHHHHHHHHhheEEccC
Confidence 333334455778888888888888899999999999999999999999999999999999986643
No 60
>PF08449 UAA: UAA transporter family; InterPro: IPR013657 This family includes transporters with a specificity for UDP-N-acetylglucosamine []. ; GO: 0055085 transmembrane transport
Probab=97.27 E-value=0.015 Score=50.07 Aligned_cols=135 Identities=12% Similarity=0.037 Sum_probs=95.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHH-HH--cCCC-cCC---CCCHHHHHHHHHHHHH
Q 026910 14 GLFAALSYGVSSMAMVFINKAVIMQYAHSM-TLLTLQQLATALLIQAG-RQ--MGYT-KSK---AIDLMTAKKLLPVSLF 85 (231)
Q Consensus 14 ~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~-~l~~~q~~~~~~~~~~~-~~--~~~~-~~~---~~~~~~~~~~~~~~~~ 85 (231)
+...++.+-++........|.++++++.+. ...++....+.+...+. .. .+.. +.. .-.++....++..++.
T Consensus 155 G~~ll~~sl~~~a~~~~~qe~~~~~~~~~~~~~mfy~n~~~~~~~~~~~~~l~~~~~~~~~~f~~~~p~~~~~l~~~s~~ 234 (303)
T PF08449_consen 155 GIILLLLSLLLDAFTGVYQEKLFKKYGKSPWELMFYTNLFSLPFLLILLFLLPTGEFRSAIRFISAHPSVLLYLLLFSLT 234 (303)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHhHHHHHHHHHHHHH
Confidence 777777777777777788888888776554 45555555555543332 11 1111 110 1112345556666666
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhee
Q 026910 86 YNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (231)
Q Consensus 86 ~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~ 148 (231)
......+-+...+..+.-...++..+--+++.+++.++++++.++..|.++++++.|..+-..
T Consensus 235 ~~~g~~~i~~~~~~~~al~~t~v~t~Rk~~sillS~~~f~~~~~~~~~~G~~lv~~g~~~~~~ 297 (303)
T PF08449_consen 235 GALGQFFIFYLIKKFSALTTTIVTTLRKFLSILLSVIIFGHPLSPLQWIGIVLVFAGIFLYSY 297 (303)
T ss_pred HHHHHHHHHHHHHhcCchhhhhHHHHHHHHHHHHHHHhcCCcCChHHHHHHHHhHHHHHHHHH
Confidence 666666667778888888889999999999999999999999999999999999999987654
No 61
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=97.23 E-value=0.018 Score=48.62 Aligned_cols=134 Identities=14% Similarity=0.091 Sum_probs=99.8
Q ss_pred CCCCH--HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHH-HHHhHHHHHHHHHHHhcCCCCChHHH----HHHHHHHh
Q 026910 69 KAIDL--MTAKKLLPVSLFYNANVAFALASLKGVNIPMYIA-IKRLTPLAVLVAGFFSGKGKPTTQVT----LSVLLTAT 141 (231)
Q Consensus 69 ~~~~~--~~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~i-lk~~~pi~~~l~~~~~~~~~~s~~~~----~s~~l~~~ 141 (231)
|.+++ +....-+..|++.+.....+..|.++..+|...= .-....+.+.+.+.++++|..+...+ .+++++++
T Consensus 36 p~~~~~~~~~~~~~lsG~~W~iGq~~qf~s~~~~GVS~tmPiStg~QLvg~sl~gv~~fgEW~~~~~~~~G~~Al~liii 115 (269)
T PF06800_consen 36 PAFSMSGTSFIVAFLSGAFWAIGQIGQFKSFKKIGVSKTMPISTGLQLVGTSLIGVLFFGEWTTTTQKIIGFLALVLIII 115 (269)
T ss_pred CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcceeeeccchhHHHHHHHHHHHhhcCCCCCcchHHHHHHHHHHHHH
Confidence 34543 5666677788999999999999999887765432 33566777999999999998776554 58899999
Q ss_pred hhhhheeccccc--------chHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHH
Q 026910 142 GCVIAALGDFSF--------DLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLII 206 (231)
Q Consensus 142 Gv~l~~~~~~~~--------~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~ 206 (231)
|+.+.+..|.+- ...|....+++.+.+..|.+..|.. +.|+++..+=++.-..+..++...
T Consensus 116 Gv~lts~~~~~~~~~~~~~~~~kgi~~Ll~stigy~~Y~~~~~~~----~~~~~~~~lPqaiGm~i~a~i~~~ 184 (269)
T PF06800_consen 116 GVILTSYQDKKSDKSSSKSNMKKGILALLISTIGYWIYSVIPKAF----HVSGWSAFLPQAIGMLIGAFIFNL 184 (269)
T ss_pred HHHHhccccccccccccccchhhHHHHHHHHHHHHHHHHHHHHhc----CCChhHhHHHHHHHHHHHHHHHhh
Confidence 999998754321 2479999999999999999996553 468888888665544444444443
No 62
>PF00893 Multi_Drug_Res: Small Multidrug Resistance protein; InterPro: IPR000390 Members of this family which have been characterised, belong to the small multidrug resistance (Smr) protein family and are integral membrane proteins. They confer resistance to a wide range of toxic compounds by removing them for the cells. The efflux is coupled to an influx of protons. An example is Escherichia coli mvrC P23895 from SWISSPROT which prevents the incorporation of methyl viologen into cells [] and is involved in ethidium bromide efflux [].; GO: 0016021 integral to membrane; PDB: 2I68_A.
Probab=96.83 E-value=0.011 Score=41.77 Aligned_cols=58 Identities=17% Similarity=0.124 Sum_probs=36.1
Q ss_pred HHHHHHHHHHHHHHhccCCChhHH-HHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHH
Q 026910 82 VSLFYNANVAFALASLKGVNIPMY-IAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLT 139 (231)
Q Consensus 82 ~~~~~~~~~~~~n~sl~~~sv~~~-~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~ 139 (231)
.-..|..+.++...+++++|++.. .+......+.+.+.+..++||+.+..++.++.++
T Consensus 35 ~~~~~~~s~~~l~~al~~lp~~vaYavw~g~g~v~~~~~~~~~f~E~~s~~~~~gi~lI 93 (93)
T PF00893_consen 35 AVVGYGLSFYFLSLALKKLPLSVAYAVWTGLGIVGVTLVGVFFFGESLSLSKWLGIGLI 93 (93)
T ss_dssp HHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHH--------HHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHhheeeC
Confidence 344789999999999999999987 4456699999999999999999999999998764
No 63
>PF06800 Sugar_transport: Sugar transport protein; InterPro: IPR010651 This is a family of bacterial sugar transporters approximately 300 residues long. Members include glucose uptake proteins [], ribose transport proteins, and several putative and hypothetical membrane proteins probably involved in sugar transport across bacterial membranes.; GO: 0015144 carbohydrate transmembrane transporter activity, 0034219 carbohydrate transmembrane transport, 0016021 integral to membrane
Probab=96.54 E-value=0.11 Score=44.00 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHH----HHHHHHHhhhhh
Q 026910 74 MTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVT----LSVLLTATGCVI 145 (231)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~----~s~~l~~~Gv~l 145 (231)
++..+-+..|+.+.....+...|-+.+-++..-.+..+.++...+.+.+++||+-+++++ ++++++++|.++
T Consensus 193 k~~~~nil~G~~w~ignl~~~is~~~~G~a~af~lSQ~~vvIStlgGI~il~E~Kt~ke~~~~~~G~~Liv~G~il 268 (269)
T PF06800_consen 193 KKSWKNILTGLIWGIGNLFYLISAQKNGVATAFTLSQLGVVISTLGGIFILKEKKTKKEMIYTLIGLILIVIGAIL 268 (269)
T ss_pred cchHHhhHHHHHHHHHHHHHHHhHHhccchhhhhHHhHHHHHHHhhhheEEEecCchhhHHHHHHHHHHHHHhhhc
Confidence 334556777999999999999999999999999999999999999999999999887754 556666666553
No 64
>COG5006 rhtA Threonine/homoserine efflux transporter [Amino acid transport and metabolism]
Probab=96.17 E-value=0.37 Score=40.32 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=79.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHH-HHHHHH
Q 026910 14 GLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFY-NANVAF 92 (231)
Q Consensus 14 ~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 92 (231)
++...+.-+.+....+...|-+-.. +.--.-+...+.++.++......... ...=.+++.+.--+.++++. ..=..+
T Consensus 149 Gv~~Al~AG~~Wa~YIv~G~r~g~~-~~g~~g~a~gm~vAaviv~Pig~~~a-g~~l~~p~ll~laLgvavlSSalPYsL 226 (292)
T COG5006 149 GVALALGAGACWALYIVLGQRAGRA-EHGTAGVAVGMLVAALIVLPIGAAQA-GPALFSPSLLPLALGVAVLSSALPYSL 226 (292)
T ss_pred HHHHHHHHhHHHHHHHHHcchhccc-CCCchHHHHHHHHHHHHHhhhhhhhc-chhhcChHHHHHHHHHHHHhcccchHH
Confidence 3334444444444444444444321 11122445556666555443321100 11112333333333344442 444668
Q ss_pred HHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhh
Q 026910 93 ALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCV 144 (231)
Q Consensus 93 ~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~ 144 (231)
...+++..|-+.+.++-++.|.+-.+.+.++++|+.|..+|+++..++.+++
T Consensus 227 EmiAL~rlp~~~F~~LlSLePa~aAl~G~i~L~e~ls~~qwlaI~~ViaAsa 278 (292)
T COG5006 227 EMIALRRLPARTFGTLLSLEPALAALSGLIFLGETLTLIQWLAIAAVIAASA 278 (292)
T ss_pred HHHHHhhCChhHHHHHHHhhHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHh
Confidence 8999999999999999999999999999999999999999999999888776
No 65
>TIGR00803 nst UDP-galactose transporter. NSTs generally appear to function by antiport mechanisms, exchanging a nucleotide-sugar for a nucleotide. Thus, CMP-sialic acid is exchanged for CMP; GDP-mannose is preferentially exchanged for GMP, and UDP-galactose and UDP-N-acetylglucosamine are exchanged for UMP (or possibly UDP). Other nucleotide sugars (e.g., GDP-fucose, UDP-xylose, UDP-glucose, UDP-N-acetylgalactosamine, etc.) may also be transported in exchange for various nucleotides, but their transporters have not been molecularly characterized. Each compound appears to be translocated by its own transport protein. Transport allows the compound, synthesized in the cytoplasm, to be exported to the lumen of the Golgi apparatus or the endoplasmic reticulum where it is used for the synthesis of glycoproteins and glycolipids.
Probab=95.56 E-value=0.23 Score=40.55 Aligned_cols=64 Identities=11% Similarity=0.012 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhh
Q 026910 82 VSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 145 (231)
Q Consensus 82 ~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l 145 (231)
..+.......+-+..++|.+.-...+.-.+.++++.+++.++++++++...+.+..+++.|+.+
T Consensus 158 ~~~~~a~~~~~v~~vlk~~~~~~~~~~~~~~~~~s~lls~~~f~~~ls~~~~~g~~lV~~~~~l 221 (222)
T TIGR00803 158 VGLLNVGGGLCIGGVVRYADNTTKSFVTALSIILSTLASVRLFDAKISSTFYLGAILVFLATFL 221 (222)
T ss_pred HHHHHHhcCceeeehhHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHeeeEe
Confidence 3344555556678889999999999999999999999999999999999999999999988754
No 66
>PF10639 UPF0546: Uncharacterised protein family UPF0546; InterPro: IPR018908 This family of proteins has no known function. Many members are annotated as potential transmembrane proteins.
Probab=95.30 E-value=0.069 Score=39.12 Aligned_cols=69 Identities=16% Similarity=0.287 Sum_probs=53.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhccCCChhHHHHH-HHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhh
Q 026910 77 KKLLPVSLFYNANVAFALASLKGVNIPMYIAI-KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 146 (231)
Q Consensus 77 ~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~il-k~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~ 146 (231)
+..+|..+=.++ ....+..+...|+|...-+ -+++-++|++.++++.+|..++++++++.+++.|+.+.
T Consensus 43 ~y~ipf~lNq~G-Sv~f~~~L~~~dlSlavPi~Nsl~fvfT~l~g~~lge~~~~~~~~~G~~Li~~Gv~Lc 112 (113)
T PF10639_consen 43 KYIIPFLLNQSG-SVLFFLLLGSADLSLAVPIANSLAFVFTALTGWLLGEEVISRRTWLGMALILAGVALC 112 (113)
T ss_pred HHHHHHHHHHHH-HHHHHHHHhcCCceeeehHHhHHHHHHHHHHHHHhcCcccchhHHHHHHHHHcCeeee
Confidence 444554443344 4455667888888877766 48899999999999999999999999999999999764
No 67
>PF05653 Mg_trans_NIPA: Magnesium transporter NIPA; InterPro: IPR008521 This family consists of several eukaryotic proteins of unknown function.
Probab=94.74 E-value=0.087 Score=45.40 Aligned_cols=64 Identities=16% Similarity=0.087 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhe
Q 026910 84 LFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 147 (231)
Q Consensus 84 ~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~ 147 (231)
+.+.+...++..|+.+.|.+..+-+.+...++.++++..++|||.+++.+.++.+++.|..+..
T Consensus 58 ~~~~~g~~~~~~Al~~ap~slv~Plg~~~lv~~~~~a~~~l~e~~~~~~~~G~~l~i~G~~liv 121 (300)
T PF05653_consen 58 LLMVLGEILNFVALGFAPASLVAPLGALSLVFNAVLARFFLGEKLTRRDIVGCALIILGSVLIV 121 (300)
T ss_pred HHHhcchHHHHHHHHhhhHHHHHHHHhhhhhhHHHHhHHHhcccchHhHHhhHHHHHhhheeeE
Confidence 3467777899999999999999999999999999999999999999999999999999998753
No 68
>PRK13499 rhamnose-proton symporter; Provisional
Probab=93.68 E-value=4.6 Score=35.53 Aligned_cols=105 Identities=12% Similarity=0.101 Sum_probs=79.1
Q ss_pred CCCHHHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHH-HHHhHHHHHHHHHHHhcCCCC-------ChHHHHHHHHHHh
Q 026910 70 AIDLMTAKKLLPVSLFYNANVAFALASLKGVNIPMYIA-IKRLTPLAVLVAGFFSGKGKP-------TTQVTLSVLLTAT 141 (231)
Q Consensus 70 ~~~~~~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~i-lk~~~pi~~~l~~~~~~~~~~-------s~~~~~s~~l~~~ 141 (231)
..+.+....-+..|++..........+.+|..+|...- .-.++.+...++..++++|-. ......+++++++
T Consensus 67 ~~~~~~~~~~~l~G~~W~iG~i~~~~s~~~iGvS~~~pIs~Gl~lv~gtL~~~i~~gew~~~~~t~~g~~~~~gv~lili 146 (345)
T PRK13499 67 SFSGSTLLPVFLFGALWGIGGITYGLTMRYLGMSLGIGIAIGITLIVGTLMPPIINGNFDVLLATNGGRMTLLGVLVALI 146 (345)
T ss_pred hcCHHHHHHHHHHHHHHHhhhhhHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHccccccccccchHHHHHHHHHHHHH
Confidence 45666666777788999999999999999988877553 345666677777777777533 2245688999999
Q ss_pred hhhhhee----ccc--------ccc-hHHHHHHHHHHHHHHHHHHH
Q 026910 142 GCVIAAL----GDF--------SFD-LSGYSMALTSVFFQTMYLVL 174 (231)
Q Consensus 142 Gv~l~~~----~~~--------~~~-~~G~~~~l~s~~~~a~~~v~ 174 (231)
|+++.+. .|. +.| ..|.++++++.+.++.|...
T Consensus 147 Gi~l~s~Ag~~k~~~~~~~~~~~~~~~KGi~ialisgi~~~~f~~~ 192 (345)
T PRK13499 147 GVAIVGRAGQLKERKMGIKKAEEFNLKKGLILAVMSGIFSACFSFA 192 (345)
T ss_pred HHHHHHHhhhhcccccccccccccchHhHHHHHHHHHHHHHHHHHH
Confidence 9999876 332 122 59999999999999999943
No 69
>KOG1441 consensus Glucose-6-phosphate/phosphate and phosphoenolpyruvate/phosphate antiporter [Carbohydrate transport and metabolism; Amino acid transport and metabolism]
Probab=93.43 E-value=0.47 Score=41.14 Aligned_cols=138 Identities=12% Similarity=0.056 Sum_probs=98.7
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhc--CCC-cHHHHHHHHHHHHHHHH-HHH---HcCCC---cCCCCCHHHHHHH
Q 026910 10 SPFLGLFAALSYGVSSMAMVFINKAVIMQ--YAH-SMTLLTLQQLATALLIQ-AGR---QMGYT---KSKAIDLMTAKKL 79 (231)
Q Consensus 10 ~~~~~~~~~~~~~~~s~~~~~~nK~ll~~--~~~-p~~l~~~q~~~~~~~~~-~~~---~~~~~---~~~~~~~~~~~~~ 79 (231)
..+.++..+..+......-.++.|.++++ .+. ++.+..++.-++.+.+. ... ..+.. .....+.+. ...
T Consensus 160 fn~~G~i~a~~s~~~~al~~I~~~~ll~~~~~~~~~~~ll~y~ap~s~~~Ll~P~~~~~~~~~~~~~~~~~~~~~~-~~~ 238 (316)
T KOG1441|consen 160 FNLFGFISAMISNLAFALRNILSKKLLTSKGESLNSMNLLYYTAPISLIFLLIPFLDYVEGNKFVGFLTAPWFVTF-LIL 238 (316)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCchHHHHHhhhHHHHHHhcchHhhhcccceeeeeccccchhh-HHH
Confidence 45678888888888888888888888853 222 46677777777777665 221 11111 111222232 223
Q ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhee
Q 026910 80 LPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (231)
Q Consensus 80 ~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~ 148 (231)
...++++...+......+..+|.=++++.-..+-+++...++++++++.++.+.++..+.+.|+.+.+.
T Consensus 239 ~~~sv~~f~~Nls~f~~ig~tSalT~~V~g~~K~~~vi~~s~~iF~~pvt~~n~~G~~iai~Gv~~Y~~ 307 (316)
T KOG1441|consen 239 LLNSVLAFLLNLSAFLVIGRTSALTYSVAGHMKRIVVIVVSWLIFGNPVTFLNALGYAIAILGVFLYSR 307 (316)
T ss_pred HHHHHHHHHHHHHHHHHHcccCchhhhhhccceEEEEEEeEeeeecCCCchhhHHHHHHHHHHHHHHHH
Confidence 333455566667788889999999999999999999999999999999999999999999999998654
No 70
>COG2962 RarD Predicted permeases [General function prediction only]
Probab=93.38 E-value=4.5 Score=34.51 Aligned_cols=75 Identities=7% Similarity=0.011 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheec
Q 026910 75 TAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG 149 (231)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~ 149 (231)
...-+...|...+.-..+...+-+.+|.++...++...|....+.+.++++|+++..+..+.+.+-.|.++.+.+
T Consensus 210 ~~~LLv~aG~vTavpL~lf~~aa~~lpls~~G~lqYi~Ptl~fllav~i~~E~~~~~~~~~F~~IW~aL~l~~~d 284 (293)
T COG2962 210 LWLLLVLAGLVTAVPLLLFAAAAKRLPLSTLGFLQYIEPTLMFLLAVLIFGEPFDSDQLVTFAFIWLALALFSID 284 (293)
T ss_pred HHHHHHHhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 445566678888888999999999999999999999999999999999999999999999999999999887654
No 71
>PF04142 Nuc_sug_transp: Nucleotide-sugar transporter; InterPro: IPR007271 This family of membrane proteins transport nucleotide sugars from the cytoplasm into golgi vesicles. P78382 from SWISSPROT transports CMP-sialic acid, P78381 from SWISSPROT transports UDP-galactose and Q9Y2D2 from SWISSPROT transports UDP-GlcNAc. This family has some but not complete overlap with the UDP-galactose transporter family IPR004689 from INTERPRO.; GO: 0005351 sugar:hydrogen symporter activity, 0008643 carbohydrate transport, 0000139 Golgi membrane, 0016021 integral to membrane
Probab=92.43 E-value=5.7 Score=33.14 Aligned_cols=128 Identities=13% Similarity=0.005 Sum_probs=80.5
Q ss_pred chhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH-HHc-CCCcCCCCCH-H-HHHHHHHHHHH
Q 026910 10 SPFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAG-RQM-GYTKSKAIDL-M-TAKKLLPVSLF 85 (231)
Q Consensus 10 ~~~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~-~~~-~~~~~~~~~~-~-~~~~~~~~~~~ 85 (231)
.+..+++.++.-.++|..-..++..++++.+.|.-+--.|+.+..+..... ... +..+..+-.. + .-.....+-+.
T Consensus 111 ~~~~G~~~vl~~~~~S~~agVy~E~~lK~~~~s~~~~N~qL~~~gi~~~~~~~~~~~~~~~~~~g~f~G~~~~~~~~i~~ 190 (244)
T PF04142_consen 111 NPLLGLLAVLAAAFLSGFAGVYFEKLLKRSNVSLWIQNMQLYLFGILFNLLALLLSDGSAISESGFFHGYSWWVWIVIFL 190 (244)
T ss_pred hhHhHHHHHHHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHhcccccccccCCchhhcchHHHHHHHH
Confidence 456788888888888888888888888876656555555554443322221 111 1111111111 1 11122223344
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHH
Q 026910 86 YNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVL 137 (231)
Q Consensus 86 ~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~ 137 (231)
.+..-..-...++|.+-=.-....++..+.+.+.+..+++.+++....++..
T Consensus 191 ~a~gGllva~v~KyadnI~K~fa~a~siv~t~~~s~~lf~~~~s~~f~lg~~ 242 (244)
T PF04142_consen 191 QAIGGLLVAFVLKYADNIVKGFATAVSIVLTAVLSVLLFGFPPSLSFLLGAA 242 (244)
T ss_pred HHHhhHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHhhhee
Confidence 5555555666788888778888889999999999999999999998776654
No 72
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=91.88 E-value=4.4 Score=30.68 Aligned_cols=123 Identities=11% Similarity=-0.004 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHH---HHcC-CCcCCCCCHHHHHHHHHHHHHHHHHHHHHH
Q 026910 19 LSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAG---RQMG-YTKSKAIDLMTAKKLLPVSLFYNANVAFAL 94 (231)
Q Consensus 19 ~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n 94 (231)
+.-|........+|--+-+..+.|..-+++-+..+.+.+.+. .+.+ ..+.++.+ ++...-|++-+..+.+.+
T Consensus 7 ~~aG~~i~~q~~~N~~L~~~~gs~~~as~i~~~~G~i~~~i~~~~~~~~~~~~~~~~p----~w~~lGG~lG~~~V~~~~ 82 (138)
T PF04657_consen 7 LLAGALIALQAAFNGQLGKALGSPLVASFISFGVGFILLLIILLITGRPSLASLSSVP----WWAYLGGLLGVFFVLSNI 82 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHhcccccchhccCC----hHHhccHHHHHHHHHHHH
Confidence 334444444455566665566667765555555555543332 2211 11122223 334446788888888899
Q ss_pred HhccCCChhHHHHHHHh-HHHHHHHHHHH----hcCCCCChHHHHHHHHHHhhhhh
Q 026910 95 ASLKGVNIPMYIAIKRL-TPLAVLVAGFF----SGKGKPTTQVTLSVLLTATGCVI 145 (231)
Q Consensus 95 ~sl~~~sv~~~~ilk~~-~pi~~~l~~~~----~~~~~~s~~~~~s~~l~~~Gv~l 145 (231)
.+...+.++..+.+--+ ..+..++++.+ .-|+++++.+.+++.++++|+.+
T Consensus 83 ~~vp~lG~~~~~~l~~~GQl~~sl~iD~fG~fg~~~~~~~~~r~lG~~l~i~Gv~L 138 (138)
T PF04657_consen 83 ILVPRLGAALTTILIVAGQLIASLLIDHFGLFGAPKRPFSLRRILGLALMIAGVIL 138 (138)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHHHHHHccccCCCCCCCCHHHHHHHHHHHHHHhC
Confidence 99998888877666544 45556777775 44788999999999999999864
No 73
>COG5070 VRG4 Nucleotide-sugar transporter [Carbohydrate transport and metabolism / Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=90.82 E-value=2.4 Score=35.01 Aligned_cols=131 Identities=13% Similarity=0.078 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHHH-cCCCc----CCCCCHHHHHHHHHHHHHHHH
Q 026910 15 LFAALSYGVSSMAMVFINKAVIMQYAHS-MTLLTLQQLATALLIQAGRQ-MGYTK----SKAIDLMTAKKLLPVSLFYNA 88 (231)
Q Consensus 15 ~~~~~~~~~~s~~~~~~nK~ll~~~~~p-~~l~~~q~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~ 88 (231)
.+|+...+..+...++..|-...--++. ..-.++.-+.+..++..+.. ..-.+ ..+++.+.+...++.|+...+
T Consensus 157 Y~Wm~~NclssaafVL~mrkri~ltNf~d~dtmfYnNllslPiL~~~s~~~edws~~n~annl~~d~l~am~ISgl~svg 236 (309)
T COG5070 157 YLWMFTNCLSSAAFVLIMRKRIKLTNFKDFDTMFYNNLLSLPILLSFSFLFEDWSPGNLANNLSVDSLMAMFISGLCSVG 236 (309)
T ss_pred eEEEehhhHhHHHHHHHHHHhhcccccchhhHHHHhhhHHHHHHHHHHHHhccCCcchhhcCCChHHHHHHHHHHHHHhh
Confidence 3556666666666666555544321222 33555666666554433321 11111 234566677788888999999
Q ss_pred HHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhh
Q 026910 89 NVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 145 (231)
Q Consensus 89 ~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l 145 (231)
..+++.++++-++...|.+..++.-....+.+.+++++..++..+.++.+.....++
T Consensus 237 iSy~saWcvrVtSSTtySMvGALNKlp~alaGlvffdap~nf~si~sillGflsg~i 293 (309)
T COG5070 237 ISYCSAWCVRVTSSTTYSMVGALNKLPIALAGLVFFDAPVNFLSIFSILLGFLSGAI 293 (309)
T ss_pred hhhccceeEeehhhhHHHHHHHhhhChHHHhhhhhcCCchhHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999999999999888887765544443
No 74
>KOG2765 consensus Predicted membrane protein [Function unknown]
Probab=89.95 E-value=5.1 Score=35.53 Aligned_cols=136 Identities=13% Similarity=-0.001 Sum_probs=89.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCC----CcHHH---HHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHH
Q 026910 12 FLGLFAALSYGVSSMAMVFINKAVIMQYA----HSMTL---LTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSL 84 (231)
Q Consensus 12 ~~~~~~~~~~~~~s~~~~~~nK~ll~~~~----~p~~l---~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (231)
..+++.+++|++-... -|.=..+.| .|++. ..+-++.-+-.+.+....+..+++-++..+...++..++
T Consensus 250 llaL~sA~~YavY~vl----lk~~~~~eg~rvdi~lffGfvGLfnllllwP~l~iL~~~~~e~F~lP~~~q~~~vv~~~l 325 (416)
T KOG2765|consen 250 LLALLSALLYAVYTVL----LKRKIGDEGERVDIQLFFGFVGLFNLLLLWPPLIILDFFGEERFELPSSTQFSLVVFNNL 325 (416)
T ss_pred HHHHHHHHHHHHHHHH----HHhhcccccccccHHHHHHHHHHHHHHHHhHHHHHHHHhccCcccCCCCceeEeeeHhhH
Confidence 4566777778766533 344444442 34433 233333333333444444432222122222223333343
Q ss_pred -HHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheeccc
Q 026910 85 -FYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGDF 151 (231)
Q Consensus 85 -~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~~ 151 (231)
-..++=+++-+|.-.++.-..++--+++++..++.+.++-++++++..+++.+++++|.+++...+.
T Consensus 326 igtvvSDylW~~a~~lTs~Lv~TlgmSltIPLA~~aD~l~k~~~~S~~~iiGsi~Ifv~Fv~vn~~~~ 393 (416)
T KOG2765|consen 326 IGTVVSDYLWAKAVLLTSPLVVTLGMSLTIPLAMFADVLIKGKHPSALYIIGSIPIFVGFVIVNISSE 393 (416)
T ss_pred HHHHHHHHHHHHHHHhccchhheeeeeEeeeHHHHHHHHHcCCCCCHHHHHHHHHHHHHHhheecccc
Confidence 3677788899999888888999999999999999999999999999999999999999999876543
No 75
>PRK13499 rhamnose-proton symporter; Provisional
Probab=88.37 E-value=17 Score=32.01 Aligned_cols=70 Identities=11% Similarity=0.105 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHH---HH-HhHHHHHHHHHHHhcCCCCC------hHHHHHHHHHHhhhhhheec
Q 026910 80 LPVSLFYNANVAFALASLKGVNIPMYIA---IK-RLTPLAVLVAGFFSGKGKPT------TQVTLSVLLTATGCVIAALG 149 (231)
Q Consensus 80 ~~~~~~~~~~~~~~n~sl~~~sv~~~~i---lk-~~~pi~~~l~~~~~~~~~~s------~~~~~s~~l~~~Gv~l~~~~ 149 (231)
...|+.......+...+-+.+++...-+ +. .+..++..+.+. ++||+-+ +..+++++++++|..+...+
T Consensus 264 ~l~G~~W~~~~~~y~~~~~~~g~~~~~~sw~l~m~~~ViistlwGi-~lkE~K~a~~k~~~~l~~G~vliI~g~~lig~~ 342 (345)
T PRK13499 264 ALAGVMWYLQFFFYAMGHSKLGAQYDFVSWMLHMSFYVLCGNLWGL-VLKEWKGASRRPVRVLSLGCVVIILAANIVGLG 342 (345)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCccchHHHHHhccHHHHHHHHhhh-hhhhccCCCccchhHHHHHHHHHHHHHHHHhhc
Confidence 4455566555555555555553333323 44 666677777777 5898776 45678888999998887665
Q ss_pred c
Q 026910 150 D 150 (231)
Q Consensus 150 ~ 150 (231)
+
T Consensus 343 ~ 343 (345)
T PRK13499 343 N 343 (345)
T ss_pred c
Confidence 3
No 76
>TIGR00688 rarD rarD protein. This uncharacterized protein is predicted to have many membrane-spanning domains.
Probab=86.69 E-value=17 Score=30.07 Aligned_cols=50 Identities=8% Similarity=0.057 Sum_probs=43.1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHh
Q 026910 74 MTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFS 123 (231)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~ 123 (231)
+++...+..+++......+.+.++++.|.+.......+.|++.++.+.+.
T Consensus 206 ~~~~~l~~~g~~t~i~~~l~~~a~~~~~a~~~s~~~yl~Pv~~~~~~~~~ 255 (256)
T TIGR00688 206 PIWLLLVLAGLITGTPLLAFVIAANRLPLNLLGLLQYIGPTIMMLCVSFL 255 (256)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHh
Confidence 35566677777778889999999999999999999999999999988653
No 77
>KOG1444 consensus Nucleotide-sugar transporter VRG4/SQV-7 [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Intracellular trafficking, secretion, and vesicular transport]
Probab=86.18 E-value=6.6 Score=33.94 Aligned_cols=135 Identities=13% Similarity=0.042 Sum_probs=78.6
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCc-HHHHHHHHHHHHHHHHHHH-HcCCC-----cCCCC-CHHHHHHHHHHHHH
Q 026910 14 GLFAALSYGVSSMAMVFINKAVIMQYAHS-MTLLTLQQLATALLIQAGR-QMGYT-----KSKAI-DLMTAKKLLPVSLF 85 (231)
Q Consensus 14 ~~~~~~~~~~~s~~~~~~nK~ll~~~~~p-~~l~~~q~~~~~~~~~~~~-~~~~~-----~~~~~-~~~~~~~~~~~~~~ 85 (231)
+..++..+..+........|.-.+.-+.. ..+..+..+.+...+.+.. ..+.. +.++. +...+..+..-+++
T Consensus 158 gY~w~~~n~~~~a~~~v~~kk~vd~~~l~~~~lv~yNnl~~L~~l~~~~~~~ge~~~l~~~~~~~~~~~~~~~~~lScv~ 237 (314)
T KOG1444|consen 158 GYSWALANCLTTAAFVVYVKKSVDSANLNKFGLVFYNNLLSLPPLLILSFITGELDALSLNFDNWSDSSVLVVMLLSCVM 237 (314)
T ss_pred hHHHHHHHHHHHHHHHHHHHHhhccccccceeEEeehhHHHHHHHHHHHHHhcchHHHHhhcccccchhHHHHHHHHHHH
Confidence 45566666666666666666665532222 2233344444433222221 11110 11111 11223333444455
Q ss_pred HHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhee
Q 026910 86 YNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (231)
Q Consensus 86 ~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~ 148 (231)
-.+..+++.++.+.+|.-.+++.....-..+.+...++++++.++....++.+.+.|.++.++
T Consensus 238 gf~isy~s~~ct~~~SAtT~tivG~~n~l~t~l~~ll~~d~~~~~~n~~gll~~~~ggv~Y~~ 300 (314)
T KOG1444|consen 238 GFGISYTSFLCTRVNSATTTTIVGAKNKLLTYLGGLLFGDKPFTFLNVIGLLVGFFGGVLYSY 300 (314)
T ss_pred HHHHHHHHHHHHhhccccceeehhhhhhHHHHHHHHhcCCceechhhhHHHHHHhhhhhHHhh
Confidence 566777888888888888888888777777778888888888888888888887777776544
No 78
>KOG2922 consensus Uncharacterized conserved protein [Function unknown]
Probab=85.08 E-value=3.5 Score=35.74 Aligned_cols=62 Identities=15% Similarity=0.061 Sum_probs=54.7
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhh
Q 026910 84 LFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 145 (231)
Q Consensus 84 ~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l 145 (231)
+.+.+.-..+..|+.+-|.+..+-+.++..+...+++..+++|+.+..-.+++.+.+.|..+
T Consensus 72 ltm~vGei~NFaAYaFAPasLVtPLGAlsvi~saila~~~L~Ekl~~~g~lGc~l~v~Gst~ 133 (335)
T KOG2922|consen 72 LTMIVGEIANFAAYAFAPASLVTPLGALSVIISAILASFFLKEKLNLLGILGCVLCVVGSTT 133 (335)
T ss_pred HHHHHHhHhhHHHHhhchHhhhccchhHHHHHHHHHHHHHHHHHHHHhhhhheeEEecccEE
Confidence 44778888899999999999999999999999999999999999999888887777776554
No 79
>KOG4510 consensus Permease of the drug/metabolite transporter (DMT) superfamily [General function prediction only]
Probab=84.44 E-value=2.3 Score=35.99 Aligned_cols=71 Identities=7% Similarity=-0.071 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhh
Q 026910 75 TAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 145 (231)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l 145 (231)
+..-..-+|++-.+...+-..+++---.+=..+.+.+-.++..+.+.+++++.+++-.|.+.+.++...+.
T Consensus 252 dr~l~~~lGvfgfigQIllTm~lQiErAGpvaim~~~dvvfAf~wqv~ff~~~Pt~ws~~Ga~~vvsS~v~ 322 (346)
T KOG4510|consen 252 DRWLFVNLGVFGFIGQILLTMGLQIERAGPVAIMTYTDVVFAFFWQVLFFGHWPTIWSWVGAVMVVSSTVW 322 (346)
T ss_pred ceEEEEEehhhhhHHHHHHHHHhhhhccCCeehhhHHHHHHHHHHHHHHhcCCChHHHhhceeeeehhHHH
Confidence 33445557888777778888899866555556689999999999999999999999999887766554443
No 80
>COG2510 Predicted membrane protein [Function unknown]
Probab=83.32 E-value=6.5 Score=29.54 Aligned_cols=56 Identities=20% Similarity=0.288 Sum_probs=48.5
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCChHHHH
Q 026910 158 YSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSL 215 (231)
Q Consensus 158 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~~~~ 215 (231)
.+|+++|++++++-.++.|--.+ +.||.--..-.+.....++....+.+|.++...
T Consensus 5 ~~~ALLsA~fa~L~~iF~KIGl~--~vdp~~At~IRtiVi~~~l~~v~~~~g~~~~~~ 60 (140)
T COG2510 5 IIYALLSALFAGLTPIFAKIGLE--GVDPDFATTIRTIVILIFLLIVLLVTGNWQAGG 60 (140)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHHHHHHHHhcCceeccc
Confidence 57999999999999999888764 468888888899999999999999999887653
No 81
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=79.70 E-value=40 Score=29.64 Aligned_cols=162 Identities=14% Similarity=0.104 Sum_probs=92.2
Q ss_pred hHHHHHHHHHHHHHHHH-HHHHHHHHhcCCCcHH-HHHHHHHHHHHHHHHHHH-cCCCc----CCCCCHHHHHHHHHHHH
Q 026910 12 FLGLFAALSYGVSSMAM-VFINKAVIMQYAHSMT-LLTLQQLATALLIQAGRQ-MGYTK----SKAIDLMTAKKLLPVSL 84 (231)
Q Consensus 12 ~~~~~~~~~~~~~s~~~-~~~nK~ll~~~~~p~~-l~~~q~~~~~~~~~~~~~-~~~~~----~~~~~~~~~~~~~~~~~ 84 (231)
..+++...+=++++.+. ...+|. + +++.- -=..|-++++++...... ....+ .+..+.+.+......|+
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkv--k--~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~l~~~~l~G~ 81 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKV--K--GWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPASTLFWTFLFGV 81 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhc--C--CccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhHHHHHHHHHH
Confidence 44555555555554432 222332 2 23332 223577888776544321 11111 12334456666777888
Q ss_pred HHHHHHHHHHHhccCCChhHHHHH--HHhHHHHHHHHHHH------hcCCCCChHHHHHHHHHHhhhhhhee----ccc-
Q 026910 85 FYNANVAFALASLKGVNIPMYIAI--KRLTPLAVLVAGFF------SGKGKPTTQVTLSVLLTATGCVIAAL----GDF- 151 (231)
Q Consensus 85 ~~~~~~~~~n~sl~~~sv~~~~il--k~~~pi~~~l~~~~------~~~~~~s~~~~~s~~l~~~Gv~l~~~----~~~- 151 (231)
+....-...-.+.+|+-++.-+-+ -.+.-+-+++=-.+ +..++-.....+++++..+|+++.+. .|.
T Consensus 82 lWGIGgltfGl~mryLGvSLG~sI~lGl~~~~GTlippi~~g~~~~l~~~~~g~~vL~Gv~v~LiGIai~g~AG~~Ke~~ 161 (344)
T PF06379_consen 82 LWGIGGLTFGLAMRYLGVSLGQSIALGLCAVFGTLIPPIFQGTFDELLATPSGQIVLLGVAVCLIGIAICGKAGSMKEKE 161 (344)
T ss_pred HHhcchhhHhHHHHHHhHHHHHHHHHHHHHHHhhchHHHHcCcccccccCCCchhhhhHHHHHHHHHHHHhHHHHhhhhh
Confidence 887777777788999776654422 22222222221111 12334455778999999999998643 111
Q ss_pred ------ccc-hHHHHHHHHHHHHHHHHHHHHHH
Q 026910 152 ------SFD-LSGYSMALTSVFFQTMYLVLVEK 177 (231)
Q Consensus 152 ------~~~-~~G~~~~l~s~~~~a~~~v~~~~ 177 (231)
++| ..|.+.++++.+++|..+.-.+.
T Consensus 162 ~~~~~~efn~~kGl~iAv~sGv~Sa~fn~g~~a 194 (344)
T PF06379_consen 162 LGEEAKEFNFKKGLIIAVLSGVMSACFNFGLDA 194 (344)
T ss_pred hccchhhhhhhhhHHHHHHHHHHHHHHHHHHHc
Confidence 334 39999999999999999985543
No 82
>KOG1581 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=76.06 E-value=43 Score=29.03 Aligned_cols=74 Identities=12% Similarity=0.068 Sum_probs=51.8
Q ss_pred CCHHHHHHHHHHHHHHHHHHHHHHHhcc-CCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhh
Q 026910 71 IDLMTAKKLLPVSLFYNANVAFALASLK-GVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 145 (231)
Q Consensus 71 ~~~~~~~~~~~~~~~~~~~~~~~n~sl~-~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l 145 (231)
..+|.+++++..+.+-+....+=..-++ +-|+. .+++--+==++....+.+.++.+.++.+|.++..++.|...
T Consensus 236 ~hp~~~~Di~l~s~~gavGQ~FI~~TI~~FGslt-~t~I~ttRk~~si~lS~i~f~h~~s~~q~~g~~iVFg~i~l 310 (327)
T KOG1581|consen 236 EHPDVAFDILLYSTCGAVGQLFIFYTIERFGSLT-FTTIMTTRKMVSIMLSCIVFGHPLSSEQWLGVLIVFGGIFL 310 (327)
T ss_pred cChhHHHHHHHHHHhhhhhhheehhhHhhcccHH-HHHHHHHHHHHHHHHHHHHhCCccchhhccCeeeehHHHHH
Confidence 3456677888888776666554444444 34443 34444455567788889999999999999999998888764
No 83
>KOG2234 consensus Predicted UDP-galactose transporter [Carbohydrate transport and metabolism]
Probab=75.50 E-value=57 Score=28.73 Aligned_cols=140 Identities=14% Similarity=-0.013 Sum_probs=82.7
Q ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHH--cCCCcC--CCCCHHHHHHHHHHH
Q 026910 8 EISPFLGLFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQ--MGYTKS--KAIDLMTAKKLLPVS 83 (231)
Q Consensus 8 ~~~~~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~--~~~~~~--~~~~~~~~~~~~~~~ 83 (231)
+..++.+..++...+..|...-.+...++.+-+.+.-+-=+|+-.--++.-.... .+..+. .++=...-+....+-
T Consensus 178 ~~n~~~G~~avl~~c~~SgfAgvYfEkiLK~s~~s~wi~NiqL~~~g~~f~~l~~~~~d~~~i~~~gff~G~s~~vw~vV 257 (345)
T KOG2234|consen 178 AQNPFLGLVAVLVACFLSGFAGVYFEKILKGSNVSLWIRNIQLYFFGILFNLLTILLQDGEAINEYGFFYGYSSIVWLVV 257 (345)
T ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHhhccccccccCCccccccHHHHHHH
Confidence 3466788888888888888888888888876554443443443333222211111 011011 111000111122223
Q ss_pred HHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhe
Q 026910 84 LFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAA 147 (231)
Q Consensus 84 ~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~ 147 (231)
+..+..-.+-..-.+|.+==+-.-..++..+++.+.+..+++.+++..-.++..+++..+.+..
T Consensus 258 l~~a~gGLlvs~v~KyADnIlK~f~~s~aiilt~v~S~~Lf~~~~t~~F~lG~~lVi~Si~lY~ 321 (345)
T KOG2234|consen 258 LLNAVGGLLVSLVMKYADNILKGFSTSVAIILTTVASIALFDFQLTLYFLLGALLVILSIFLYS 321 (345)
T ss_pred HHHhccchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHccCCchHHHHHHHHHHHHHHHHhh
Confidence 3333333344455566655555666678899999999999999999999888888888877765
No 84
>PF03613 EIID-AGA: PTS system mannose/fructose/sorbose family IID component; InterPro: IPR004704 The phosphoenolpyruvate-dependent sugar phosphotransferase system (PTS) [, ] is a major carbohydrate transport system in bacteria. The PTS catalyses the phosphorylation of incoming sugar substrates and coupled with translocation across the cell membrane, makes the PTS a link between the uptake and metabolism of sugars. The general mechanism of the PTS is the following: a phosphoryl group from phosphoenolpyruvate (PEP) is transferred via a signal transduction pathway, to enzyme I (EI) which in turn transfers it to a phosphoryl carrier, the histidine protein (HPr). Phospho-HPr then transfers the phosphoryl group to a sugar-specific permease, a membrane-bound complex known as enzyme 2 (EII), which transports the sugar to the cell. EII consists of at least three structurally distinct domains IIA, IIB and IIC []. These can either be fused together in a single polypeptide chain or exist as two or three interactive chains, formerly called enzymes II (EII) and III (EIII). The first domain (IIA or EIIA) carries the first permease-specific phosphorylation site, a histidine which is phosphorylated by phospho-HPr. The second domain (IIB or EIIB) is phosphorylated by phospho-IIA on a cysteinyl or histidyl residue, depending on the sugar transported. Finally, the phosphoryl group is transferred from the IIB domain to the sugar substrate concomitantly with the sugar uptake processed by the IIC domain. This third domain (IIC or EIIC) forms the translocation channel and the specific substrate-binding site. An additional transmembrane domain IID, homologous to IIC, can be found in some PTSs, e.g. for mannose [, , , ]. Bacterial PTS transporters transport and concomitantly phosphorylate their sugar substrates, and typically consist of multiple subunits or protein domains.The Man family is unique in several respects among PTS permease families. It is the only PTS family in which members possess a IID protein. It is the only PTS family in which the IIB constituent is phosphorylated on a histidyl rather than a cysteyl residue. Its permease members exhibit broad specificity for a range of sugars, rather than being specific for just one or a few sugars. The mannose permease of Escherichia coli, for example, can transport and phosphorylate glucose, mannose, fructose, glucosamine,N-acetylglucosamine, and other sugars. Other members of this can transport sorbose, fructose and N-acetylglucosamine. This family is specific for the IID subunits of this family of PTS transporters.; GO: 0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system, 0016021 integral to membrane
Probab=72.59 E-value=58 Score=27.55 Aligned_cols=57 Identities=12% Similarity=0.090 Sum_probs=33.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCC--------Chh----HHHHHHHhHHHHHHHHHHHhcCCC-CChHHHHH
Q 026910 79 LLPVSLFYNANVAFALASLKGV--------NIP----MYIAIKRLTPLAVLVAGFFSGKGK-PTTQVTLS 135 (231)
Q Consensus 79 ~~~~~~~~~~~~~~~n~sl~~~--------sv~----~~~ilk~~~pi~~~l~~~~~~~~~-~s~~~~~s 135 (231)
.-.+|+.-.+....++..++.. +++ +-++.-.+.|.....+.+.+.+++ .+..+.+-
T Consensus 180 asilGl~vvGal~as~V~v~~~l~~~~g~~~~~lQ~~lD~I~P~lLpl~~~~~~y~ll~kk~~~~~~~i~ 249 (264)
T PF03613_consen 180 ASILGLMVVGALIASYVNVSTPLTITIGGVTISLQEILDGIMPGLLPLLLTLLVYWLLKKKKVSPTKLIL 249 (264)
T ss_pred HHHHHHHHHHHHHHHeEEEeeeEEEecCCceeeHHHhHHhHHhhHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 3345555566665554443321 122 345666777888888888888766 77665543
No 85
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=71.56 E-value=3.4 Score=34.55 Aligned_cols=74 Identities=14% Similarity=0.214 Sum_probs=54.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHH----HHHHHHHhhhhhhe
Q 026910 74 MTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVT----LSVLLTATGCVIAA 147 (231)
Q Consensus 74 ~~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~----~s~~l~~~Gv~l~~ 147 (231)
|+...-+..|+.......+...|-+.+.+++.-.+..+..+...+.+.+++|||-+++.+ .+++++++|+.+.+
T Consensus 207 K~t~~nii~G~~Wa~GNl~ml~a~~~~GvAt~FSlSQlgViisTiGGIl~L~ekKtkkEm~~v~iGiilivvgai~lg 284 (288)
T COG4975 207 KYTWLNIIPGLIWAIGNLFMLLAAQKVGVATSFSLSQLGVIISTIGGILFLGEKKTKKEMVYVIIGIILIVVGAILLG 284 (288)
T ss_pred HHHHHHHhhHHHHHhhHHHHHHhhhhhceeeeeeHhhheeeeeecceEEEEeccCchhhhhhhhhhHHHHHHHhhhhh
Confidence 444556667888877777777777777777766677777788889999999999988765 56667777766543
No 86
>PF00892 EamA: EamA-like transporter family; InterPro: IPR000620 This domain is found in proteins including the Erwinia chrysanthemi PecM protein, which is involved in pectinase, cellulase and blue pigment regulation; and the Salmonella typhimurium PagO protein, the function of which is unknown. Many members of this family are classed as drug/metabolite transporters and have no known function. They are predicted to be integral membrane proteins and many of the proteins contain two copies of this domain [].; GO: 0016020 membrane
Probab=69.30 E-value=5.1 Score=28.50 Aligned_cols=42 Identities=21% Similarity=0.371 Sum_probs=32.8
Q ss_pred HHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCCh
Q 026910 167 FQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEF 211 (231)
Q Consensus 167 ~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~ 211 (231)
++|.+.+..|+..++ .|+.+..++....+.+ +++.....+..
T Consensus 2 ~~a~~~~~~k~~~~~--~~~~~~~~~~~~~~~~-~~~~~~~~~~~ 43 (126)
T PF00892_consen 2 SWAIYSVFSKKLLKK--ISPLSITFWRFLIAGI-LLILLLILGRK 43 (126)
T ss_pred eeeeHHHHHHHHhcc--CCHHHHHHHHHHHHHH-HHHHHHhhccc
Confidence 567888888888754 7999999999999988 66666666443
No 87
>COG4975 GlcU Putative glucose uptake permease [Carbohydrate transport and metabolism]
Probab=64.34 E-value=1 Score=37.56 Aligned_cols=178 Identities=13% Similarity=0.111 Sum_probs=110.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH----HHHHHHHHHHHHHHHHHHHcCCCcCCCCCHHHHHHHHHHHHHHH
Q 026910 12 FLGLFAALSYGVSSMAMVFINKAVIMQYAHSM----TLLTLQQLATALLIQAGRQMGYTKSKAIDLMTAKKLLPVSLFYN 87 (231)
Q Consensus 12 ~~~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~----~l~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (231)
..+++.++.|+.... +.||.= |-|. ..+.--++++.++.++ ..|.++.+....-+.-|++..
T Consensus 5 liaL~P~l~WGsip~---v~~k~G----G~p~qQ~lGtT~GALifaiiv~~~-------~~p~~T~~~~iv~~isG~~Ws 70 (288)
T COG4975 5 LIALLPALGWGSIPL---VANKFG----GKPYQQTLGTTLGALIFAIIVFLF-------VSPELTLTIFIVGFISGAFWS 70 (288)
T ss_pred HHHHHHHHHhcccce---eeeecC----CChhHhhhhccHHHHHHHHHHhee-------ecCccchhhHHHHHHhhhHhh
Confidence 457778889998753 235531 2232 1222222233222211 234456555555566678888
Q ss_pred HHHHHHHHhccCCChhHHHH-HHHhHHHHHHHHHHHhcCCCCChHHH----HHHHHHHhhhhhheeccc---cc-----c
Q 026910 88 ANVAFALASLKGVNIPMYIA-IKRLTPLAVLVAGFFSGKGKPTTQVT----LSVLLTATGCVIAALGDF---SF-----D 154 (231)
Q Consensus 88 ~~~~~~n~sl~~~sv~~~~i-lk~~~pi~~~l~~~~~~~~~~s~~~~----~s~~l~~~Gv~l~~~~~~---~~-----~ 154 (231)
.....+..|.++..+|-+.= ......+-+-+++.+.++|-.+..+. .+++++++|+.+.+..|. +. -
T Consensus 71 ~GQ~~Qfka~~~iGVSkamPiStG~QLVg~sL~gV~~f~EW~t~~~~IlG~iAliliviG~~lTs~~~~~nk~~~~~~n~ 150 (288)
T COG4975 71 FGQANQFKAIQLIGVSKAMPISTGMQLVGTSLFGVFVFHEWTTPTQIILGFIALILIVIGIYLTSKQDRNNKEEENPSNL 150 (288)
T ss_pred hhhhhhhhheeeeeeeccccccchhhHhhceeeeEEEEeccCcchhHHHHHHHHHHHHHhheEeeeeccccccccChHhh
Confidence 89999999999987765432 23445566778899999997776554 688899999999988664 11 1
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHH
Q 026910 155 LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIV 207 (231)
Q Consensus 155 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~ 207 (231)
-.|....+.|.+.+..|.+..|.. +.|.++...-++.-.....+.....
T Consensus 151 kkgi~~L~iSt~GYv~yvvl~~~f----~v~g~saiLPqAiGMv~~ali~~~~ 199 (288)
T COG4975 151 KKGIVILLISTLGYVGYVVLFQLF----DVDGLSAILPQAIGMVIGALILGFF 199 (288)
T ss_pred hhheeeeeeeccceeeeEeeeccc----cccchhhhhHHHHHHHHHHHHHhhc
Confidence 378888888888888888776544 3566666665554444333333333
No 88
>KOG1580 consensus UDP-galactose transporter related protein [Carbohydrate transport and metabolism]
Probab=63.03 E-value=15 Score=30.76 Aligned_cols=35 Identities=6% Similarity=-0.003 Sum_probs=29.9
Q ss_pred hHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhh
Q 026910 111 LTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 145 (231)
Q Consensus 111 ~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l 145 (231)
+--.|+.+.+.++++...+.++|++.++++.|...
T Consensus 276 TRKfFTil~SVllf~npls~rQwlgtvlVF~aL~~ 310 (337)
T KOG1580|consen 276 TRKFFTILISVLLFNNPLSGRQWLGTVLVFSALTA 310 (337)
T ss_pred hHHHHHHHHHHHHhcCcCcHHHHHHHHHHHHHhhh
Confidence 33468889999999999999999999998888765
No 89
>COG4682 Predicted membrane protein [Function unknown]
Probab=53.78 E-value=64 Score=23.87 Aligned_cols=83 Identities=11% Similarity=0.165 Sum_probs=49.0
Q ss_pred CCCCh-HHHHHHHHHHhhhhhhee----cccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHH
Q 026910 126 GKPTT-QVTLSVLLTATGCVIAAL----GDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPF 200 (231)
Q Consensus 126 ~~~s~-~~~~s~~l~~~Gv~l~~~----~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~ 200 (231)
|++++ .+..+-...+.|+++... .|.+.|=.|+.++.+-....+.+. ++|..+++.+-.+.+-.+|.-.....+
T Consensus 6 ~~~s~af~~va~~~lv~G~vvyLiGLWna~~qLnEKGYyfaVlvl~~F~a~s-~Qk~vrdk~e~~~i~~~~~~~C~~~~l 84 (128)
T COG4682 6 EIVSKAFTIVAWLALVVGAVVYLVGLWNACMQLNEKGYYFAVLVLGLFGAYS-YQKTVRDKLEDIPITSIYYHRCQLVAL 84 (128)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHhhcccchhhccCceeehhHHHHhhHHHH-HHHHHHHhccCCcchHHHHHHHHHHHH
Confidence 33443 455777788888887543 478888899887776666555554 445455443333555555554444444
Q ss_pred HHHHHHHhC
Q 026910 201 LVFLIIVTG 209 (231)
Q Consensus 201 l~~~~~~~g 209 (231)
..+..+..|
T Consensus 85 isigll~vG 93 (128)
T COG4682 85 ISIGLLFVG 93 (128)
T ss_pred HHHHHHHHH
Confidence 444444444
No 90
>PRK11383 hypothetical protein; Provisional
Probab=47.58 E-value=1.2e+02 Score=23.04 Aligned_cols=78 Identities=13% Similarity=0.257 Sum_probs=37.6
Q ss_pred CCCChHHH-HHHHHHHhhhhhhee----cccccchHHHHHHHHHHHHHHHHHHHHHHhcCC-CCCChhHHHHHHhhhHHH
Q 026910 126 GKPTTQVT-LSVLLTATGCVIAAL----GDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAE-DGLSSVEIMFYNSFLSLP 199 (231)
Q Consensus 126 ~~~s~~~~-~s~~l~~~Gv~l~~~----~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~-~~~~~~~~~~y~~~~~~~ 199 (231)
+|++..-+ +|-+..++|+..... .+...|=.|+.++.+-.-..+... ++|..+++ .+.++-+ .||...+...
T Consensus 6 ~~~t~af~~~sw~al~~g~~~y~iGLwnA~~~LsEKGyY~~vl~lglF~avs-~QK~vRD~~egi~vt~-~f~~~cw~a~ 83 (145)
T PRK11383 6 STYSPAFSIVSWIALVGGIVTYLLGLWNAEMQLNEKGYYFAVLVLGLFSAAS-YQKTVRDKYEGIPTTS-IYYMTCLTVF 83 (145)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHhhcccccCcccHHHHHHHHHHHHHHH-HHHHHhhcccCCChhH-HHHHHHHHHH
Confidence 34444332 444455555554322 356777788777655544444443 44555543 2344434 4444333333
Q ss_pred HHHHHH
Q 026910 200 FLVFLI 205 (231)
Q Consensus 200 ~l~~~~ 205 (231)
++.+..
T Consensus 84 l~~i~L 89 (145)
T PRK11383 84 IISVAL 89 (145)
T ss_pred HHHHHH
Confidence 333333
No 91
>PF05297 Herpes_LMP1: Herpesvirus latent membrane protein 1 (LMP1); InterPro: IPR007961 This family consists of several latent membrane protein 1 or LMP1s mostly from Epstein-Barr virus (strain GD1) (HHV-4) (Human herpesvirus 4). LMP1 of HHV-4 is a 62-65 kDa plasma membrane protein possessing six membrane spanning regions, a short cytoplasmic N terminus and a long cytoplasmic carboxy tail of 200 amino acids. HHV-4 virus latent membrane protein 1 (LMP1) is essential for HHV-4 mediated transformation and has been associated with several cases of malignancies. HHV-4-like viruses in Macaca fascicularis (Cynomolgus monkeys) have been associated with high lymphoma rates in immunosuppressed monkeys [].; GO: 0019087 transformation of host cell by virus, 0016021 integral to membrane; PDB: 1CZY_E 1ZMS_B.
Probab=46.33 E-value=6.6 Score=33.48 Aligned_cols=101 Identities=12% Similarity=0.075 Sum_probs=0.0
Q ss_pred HHHHhHHHHHHHHH-HHhcCCC-CChHHHHHHHHHHhhhhhheecc--cccchHHHHHHHHHHHHHHHHHHHHHHhcCCC
Q 026910 107 AIKRLTPLAVLVAG-FFSGKGK-PTTQVTLSVLLTATGCVIAALGD--FSFDLSGYSMALTSVFFQTMYLVLVEKSGAED 182 (231)
Q Consensus 107 ilk~~~pi~~~l~~-~~~~~~~-~s~~~~~s~~l~~~Gv~l~~~~~--~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~ 182 (231)
++.++..+.+.++- .+++|+| .-+.-.++++++++-..+...-. .+.=+.|.++.++.+++.-.-..|.. +++++
T Consensus 54 vl~sfAvvliiIIiIImlF~RrLLCPLGlLCiilimi~lLv~~L~tLtGQ~LF~Gi~~l~l~~lLaL~vW~Ym~-lLr~~ 132 (381)
T PF05297_consen 54 VLYSFAVVLIIIIIIIMLFKRRLLCPLGLLCIILIMIVLLVSMLWTLTGQTLFVGIVILFLCCLLALGVWFYMW-LLREL 132 (381)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhcCcchHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHH-HHHHh
Confidence 34444444433333 3334444 66677778887777666654422 23336787777666666555555543 44556
Q ss_pred CCChhHHHHHH-hhhHHHHHHHHHHHh
Q 026910 183 GLSSVEIMFYN-SFLSLPFLVFLIIVT 208 (231)
Q Consensus 183 ~~~~~~~~~y~-~~~~~~~l~~~~~~~ 208 (231)
.-+-|+++-+. +++-++++++++...
T Consensus 133 GAs~WtiLaFcLAF~LaivlLIIAv~L 159 (381)
T PF05297_consen 133 GASFWTILAFCLAFLLAIVLLIIAVLL 159 (381)
T ss_dssp ---------------------------
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777776543 444445555555444
No 92
>COG3238 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=43.00 E-value=1.5e+02 Score=22.78 Aligned_cols=131 Identities=14% Similarity=0.031 Sum_probs=71.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHcCCCcCCCCC--HHHHHHHHHHHHHHHHHHHH
Q 026910 15 LFAALSYGVSSMAMVFINKAVIMQYAHSMTLLTLQQLATALLIQAGRQMGYTKSKAID--LMTAKKLLPVSLFYNANVAF 92 (231)
Q Consensus 15 ~~~~~~~~~~s~~~~~~nK~ll~~~~~p~~l~~~q~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 92 (231)
.+..+.-|.+.....-.|--+-...+.|..-.+.-+......+.+....+. +.++.. .+.-++...-|++-+..+..
T Consensus 7 ll~~i~aG~~l~~Q~~iN~qL~~~~~spl~As~isf~vGt~~L~~l~l~~~-~~~~~a~~~~~pwW~~~GG~lGa~~vt~ 85 (150)
T COG3238 7 LLFAILAGALLPLQAAINGRLARYLGSPLLASLISFLVGTVLLLILLLIKQ-GHPGLAAVASAPWWAWIGGLLGAIFVTS 85 (150)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHHHHHHhc-CCCchhhccCCchHHHHccchhhhhhhh
Confidence 344455555555666667766666677876556666665444333322211 222222 12223334444444444444
Q ss_pred HHHhccCCChhHHH-HHHHhHHHHHHHHHHHhc----CCCCChHHHHHHHHHHhhhhhh
Q 026910 93 ALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSG----KGKPTTQVTLSVLLTATGCVIA 146 (231)
Q Consensus 93 ~n~sl~~~sv~~~~-ilk~~~pi~~~l~~~~~~----~~~~s~~~~~s~~l~~~Gv~l~ 146 (231)
+-.....+-....+ ..-+-..+.-++++.+=. +++++..++++++++.+|+.+.
T Consensus 86 s~~l~p~lGa~~t~~l~i~gQli~glliD~fG~~g~~~~~~~~~r~lgi~L~l~gil~~ 144 (150)
T COG3238 86 SILLAPRLGAATTIALVIAGQLIMGLLIDHFGWFGVPKRPLNLPRILGILLVLAGILLA 144 (150)
T ss_pred hHHhccchhHHHHHHHHHHHHHHHHHHHHhhcccCCCcCCCCHHHHHHHHHHHHHHHHh
Confidence 44444444444433 344455556666666544 4789999999999999996654
No 93
>PF04657 DUF606: Protein of unknown function, DUF606; InterPro: IPR006750 This family contains uncharacterised bacterial proteins.
Probab=42.68 E-value=1e+02 Score=23.16 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=41.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCCh
Q 026910 158 YSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEF 211 (231)
Q Consensus 158 ~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~ 211 (231)
.++++.+..+.+++.....++.++.+ ||+.-.+.+...+.+.+..+.+.+++.
T Consensus 3 ~lla~~aG~~i~~q~~~N~~L~~~~g-s~~~as~i~~~~G~i~~~i~~~~~~~~ 55 (138)
T PF04657_consen 3 ILLALLAGALIALQAAFNGQLGKALG-SPLVASFISFGVGFILLLIILLITGRP 55 (138)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 46677778888888877777765433 699999999999999999888888765
No 94
>PRK11403 hypothetical protein; Provisional
Probab=42.62 E-value=1.3e+02 Score=21.89 Aligned_cols=76 Identities=13% Similarity=0.016 Sum_probs=39.6
Q ss_pred HHHHHHHHHhhhhhhe---e-cccccchHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHH
Q 026910 132 VTLSVLLTATGCVIAA---L-GDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIV 207 (231)
Q Consensus 132 ~~~s~~l~~~Gv~l~~---~-~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~ 207 (231)
+.+|-....+|+.... + .+...|-.|+.+.++--...+... ++|..+++..-+-+--..+......+.++.+..+
T Consensus 5 r~~sw~aL~~G~~~YliGLWnA~m~LneKGYyf~vL~~GlF~~vs-~qk~vrd~~~~~~y~~~cw~~~llsi~LL~vGl~ 83 (113)
T PRK11403 5 KTVAKLLFVVGALVYLVGLWISCPLLSGKGYFLGVLMTATFGNYA-YLRAEKLGQLDDFFIHICQLVALITIGLLFIGVL 83 (113)
T ss_pred HHHHHHHHHHHHHHHHHHhcccccccCccchhHHHHHHHHHHHHH-HHHHHhccccchHHHHHHHHHHHHHHHHHHHHHh
Confidence 4455556666666432 2 477888899988776554444443 3666665432232223333333333444444444
Q ss_pred h
Q 026910 208 T 208 (231)
Q Consensus 208 ~ 208 (231)
.
T Consensus 84 N 84 (113)
T PRK11403 84 N 84 (113)
T ss_pred c
Confidence 4
No 95
>TIGR03144 cytochr_II_ccsB cytochrome c-type biogenesis protein CcsB. Members of this protein family represent one of two essential proteins of system II for c-type cytochrome biogenesis. Additional proteins tend to be part of the system but can be replaced by chemical reductants such as dithiothreitol. This protein is designated CcsB in Bordetella pertussis and some other bacteria, resC in Bacillus (where there is additional N-terminal sequence), and CcsA in chloroplast. We use the CcsB designation here. Member sequences show regions of strong sequence conservation and variable-length, poorly conserved regions in between; sparsely filled columns were removed from the seed alignment prior to model construction.
Probab=35.71 E-value=2.5e+02 Score=23.14 Aligned_cols=56 Identities=20% Similarity=0.293 Sum_probs=32.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCC-----------CCC---hhHHHHHHhhhHHHHHHHHHHHhCC
Q 026910 155 LSGYSMALTSVFFQTMYLVLVEKSGAED-----------GLS---SVEIMFYNSFLSLPFLVFLIIVTGE 210 (231)
Q Consensus 155 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~-----------~~~---~~~~~~y~~~~~~~~l~~~~~~~ge 210 (231)
..|+....++.+...+|.+..++..+++ +++ ..|.+.|........++-.++++|-
T Consensus 101 ~l~ya~~~la~~~a~lyL~~~~~lk~k~~~~~~~~~~~~~lp~L~~ld~l~~~~~~~Gf~~ltl~li~G~ 170 (243)
T TIGR03144 101 ILSYAALLVGSLLSIAYLLKTRKQNLEYRTSRFLGANSRRLPLLETLDNLSYRTIAIGFPLLTIGIISGA 170 (243)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcchhcccchhhhhhcCccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5788888888888888877666543221 122 3455555544444444455566664
No 96
>KOG4831 consensus Unnamed protein [Function unknown]
Probab=33.22 E-value=63 Score=23.43 Aligned_cols=68 Identities=18% Similarity=0.150 Sum_probs=45.4
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHH-HHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhh
Q 026910 78 KLLPVSLFYNANVAFALASLKGVNIPMYI-AIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 146 (231)
Q Consensus 78 ~~~~~~~~~~~~~~~~n~sl~~~sv~~~~-ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~ 146 (231)
+++|..+=.+++. +.+.-|+..|++.+. +..+++-+|+.+.+..+..|...++.+++..++++|..+.
T Consensus 55 Y~iPFllNqcgSa-ly~~tLa~a~islavpv~nsltfafta~~G~~LGE~~~g~~a~lGt~liv~Gi~Lc 123 (125)
T KOG4831|consen 55 YLIPFLLNQCGSA-LYYLTLASAPISLAVPVTNSLTFAFTAIFGKALGEETQGGLALLGTSLIVFGIWLC 123 (125)
T ss_pred HHHHHHHHHhhHH-HHHHHHhcCCceeeeeecchhHHHHHHHHHHHhccccccceeehhhhHHhhhhhhe
Confidence 4445444344332 334445555544433 3556788899999999888888888899999999998653
No 97
>KOG1583 consensus UDP-N-acetylglucosamine transporter [Carbohydrate transport and metabolism]
Probab=32.63 E-value=1.6e+02 Score=25.31 Aligned_cols=130 Identities=17% Similarity=0.076 Sum_probs=70.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHHHHH--------HHcCCCc---CCCCCHHHHHHHHH
Q 026910 14 GLFAALSYGVSSMAMVFINKAVIMQYAHSM-TLLTLQQLATALLIQAG--------RQMGYTK---SKAIDLMTAKKLLP 81 (231)
Q Consensus 14 ~~~~~~~~~~~s~~~~~~nK~ll~~~~~p~-~l~~~q~~~~~~~~~~~--------~~~~~~~---~~~~~~~~~~~~~~ 81 (231)
++....+--..|.-+-+++.-.++.+|-+. --.++--..+.....+. +.....| .|.+.. .+|
T Consensus 165 Gi~lL~~al~~sa~mgiyqE~~Y~kyGKh~~EalFytH~LsLP~Flf~~~div~~~~~~~~se~~~~p~~g~-----~vP 239 (330)
T KOG1583|consen 165 GIALLVFALLLSAYMGIYQETTYQKYGKHWKEALFYTHFLSLPLFLFMGDDIVSHWRLAFKSESYLIPLLGF-----KVP 239 (330)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHhccchHHHhcchHHHHHHHHhcCcceeccccCc-----ccc
Confidence 343444445566667777888887776443 23333222222222211 1111111 122221 155
Q ss_pred HHHHH-HHHHHHHHHhccCCChhHHH-------HHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhhee
Q 026910 82 VSLFY-NANVAFALASLKGVNIPMYI-------AIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAAL 148 (231)
Q Consensus 82 ~~~~~-~~~~~~~n~sl~~~sv~~~~-------ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~ 148 (231)
....| ..+..+++.+.+++..-... +.-.+==.+.++++.+.++...++..|++..++++|..+.+.
T Consensus 240 ~~~~yLl~n~L~Qy~CikgVy~L~te~~sLTVTlvltlRKFvSLl~SiiyF~Npft~~h~lGa~lVF~Gt~~fa~ 314 (330)
T KOG1583|consen 240 SMWVYLLFNVLTQYFCIKGVYILTTETSSLTVTLVLTLRKFVSLLFSIIYFENPFTPWHWLGAALVFFGTLLFAN 314 (330)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhceecceEEEEeeeHHHHHHHhheeeEecCCCCHHHHHHHHHHHHHHHHHHH
Confidence 55555 33445566666655332211 112222356678899999999999999999999999998643
No 98
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=31.59 E-value=3e+02 Score=24.10 Aligned_cols=27 Identities=15% Similarity=0.293 Sum_probs=23.6
Q ss_pred HHHHHHHhHHHHHHHHHHHhcCCCCCh
Q 026910 104 MYIAIKRLTPLAVLVAGFFSGKGKPTT 130 (231)
Q Consensus 104 ~~~ilk~~~pi~~~l~~~~~~~~~~s~ 130 (231)
..+..|.+.|.|.++-++++++|+...
T Consensus 46 lns~sr~aVPLFfmISGyL~~~e~s~q 72 (332)
T COG3274 46 LNSASRVAVPLFFMISGYLFFGERSAQ 72 (332)
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccc
Confidence 568899999999999999999996543
No 99
>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]
Probab=29.66 E-value=1.2e+02 Score=26.23 Aligned_cols=49 Identities=16% Similarity=0.133 Sum_probs=35.1
Q ss_pred HHHHHHHHHHhhhhhheecccccchHHHHHHHHHHHHHHHHHHHHHHhc
Q 026910 131 QVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVLVEKSG 179 (231)
Q Consensus 131 ~~~~s~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~ 179 (231)
...+|+++++.|.+++.+.+.++++.=.++.++++++-=.-..+.+...
T Consensus 19 Tl~aai~Pv~~G~a~A~~~~~~f~~~~~ll~Li~~~~iq~~vN~~NdY~ 67 (303)
T COG1575 19 TLPAAIAPVIVGTALAFWYGKSFNLLVALLALIAAILLQILVNLANDYF 67 (303)
T ss_pred chHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 3458999999999999887778887777777777665544444444443
No 100
>PF07578 LAB_N: Lipid A Biosynthesis N-terminal domain; InterPro: IPR011499 This domain is found at the N terminus of a group of Chlamydial lipid A biosynthesis proteins. It is also found by itself in a family of proteins of unknown function.; GO: 0008915 lipid-A-disaccharide synthase activity, 0009245 lipid A biosynthetic process
Probab=27.94 E-value=1.9e+02 Score=19.33 Aligned_cols=43 Identities=16% Similarity=0.142 Sum_probs=30.1
Q ss_pred HHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCChHHHHH
Q 026910 171 YLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLS 216 (231)
Q Consensus 171 ~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~~~~~ 216 (231)
+.+.+||.. +-.-....+|.++.+..+++..++..+|+.-+..
T Consensus 16 QW~~SEk~k---~sv~P~~FW~lSl~Gs~lll~Y~i~r~DpV~ilg 58 (72)
T PF07578_consen 16 QWIYSEKAK---KSVVPVAFWYLSLIGSLLLLIYAIIRKDPVFILG 58 (72)
T ss_pred HHHHHHHcC---CCCCcHHHHHHHHHHHHHHHHHHHHHcChHHHHH
Confidence 334555542 2244456779999999999999999988765544
No 101
>PF09930 DUF2162: Predicted transporter (DUF2162); InterPro: IPR017199 This group represents a predicted membrane transporter, MTH672 type.
Probab=25.49 E-value=3.9e+02 Score=22.06 Aligned_cols=98 Identities=13% Similarity=0.086 Sum_probs=57.6
Q ss_pred HHHHHHHHHHHHH----HHHcCCCcCCCCCH-HHHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHH---
Q 026910 47 TLQQLATALLIQA----GRQMGYTKSKAIDL-MTAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLV--- 118 (231)
Q Consensus 47 ~~q~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l--- 118 (231)
..|.+.+...... .++.+. +.++.++ ..+...+||-++..+....--......+++..++-+.+..++...
T Consensus 69 ~~h~imal~li~~Gi~ti~~W~~-~~~~~s~~t~lal~~PCPvCl~Ai~~S~~l~a~~~~~s~~~ig~~~g~if~i~il~ 147 (224)
T PF09930_consen 69 VIHLIMALLLIYAGIYTIKKWKK-SGKDSSRRTFLALSLPCPVCLTAIFFSIMLLAPSIGLSGWEIGLVLGLIFFILILL 147 (224)
T ss_pred HHHHHHHHHHHHHHHHHHHHHcc-cCCCCcccchhhhhcCchHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHH
Confidence 4566666554322 233322 2233333 356677888888877777777777888888888888777766443
Q ss_pred HHHHhcCCCCChHHHHHHHHHHhhhhh
Q 026910 119 AGFFSGKGKPTTQVTLSVLLTATGCVI 145 (231)
Q Consensus 119 ~~~~~~~~~~s~~~~~s~~l~~~Gv~l 145 (231)
.+.+..+.+.+....++-.++++|...
T Consensus 148 ss~i~r~~~~~~p~~LG~~Mi~~Glyf 174 (224)
T PF09930_consen 148 SSFIFRRLKKPYPIILGNFMIFLGLYF 174 (224)
T ss_pred HHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence 333333444444445566666655543
No 102
>PF06946 Phage_holin_5: Phage holin; InterPro: IPR009708 This entry represents the Bacteriophage A118, holin protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This protein family represent one of a large number of mutually dissimilar families of phage holins. It is thought that the temporal precision of holin-mediated lysis may occur through the build-up of a holin oligomer which causes the lysis [].
Probab=25.25 E-value=2.5e+02 Score=19.78 Aligned_cols=54 Identities=13% Similarity=0.104 Sum_probs=30.4
Q ss_pred CCCCChHHHHHHHHHHhhhhhhe---ecccccchHHHHH--HHHHHHHHHHHHHHHHHh
Q 026910 125 KGKPTTQVTLSVLLTATGCVIAA---LGDFSFDLSGYSM--ALTSVFFQTMYLVLVEKS 178 (231)
Q Consensus 125 ~~~~s~~~~~s~~l~~~Gv~l~~---~~~~~~~~~G~~~--~l~s~~~~a~~~v~~~~~ 178 (231)
|.+.-+.+|+-++-+.+|+.+-. ....+.++...+| ++...-..+++..++||-
T Consensus 27 kT~~v~~K~iPlIs~viGilLG~~~~~~~~~~~l~~~~~aG~laGlAaTGL~e~~t~r~ 85 (93)
T PF06946_consen 27 KTKVVPNKWIPLISVVIGILLGAAAYPLTGDGNLALMAWAGGLAGLAATGLFEQFTNRS 85 (93)
T ss_pred HhccCCcchhhHHHHHHHHHHHHHhhhcCCCccHHHHHHHHHHhhhhhhhHHHHHHhhh
Confidence 34445788888888888888732 2222334433333 122333455667777754
No 103
>COG2155 Uncharacterized conserved protein [Function unknown]
Probab=25.09 E-value=1.6e+02 Score=20.12 Aligned_cols=44 Identities=27% Similarity=0.424 Sum_probs=30.3
Q ss_pred hHHHHHHHHHHhhhhhh-eecccccchHHHHHHHHHHHHHHHHHH
Q 026910 130 TQVTLSVLLTATGCVIA-ALGDFSFDLSGYSMALTSVFFQTMYLV 173 (231)
Q Consensus 130 ~~~~~s~~l~~~Gv~l~-~~~~~~~~~~G~~~~l~s~~~~a~~~v 173 (231)
..+..+.+++++|..=- ..+-.++|..+.+++..+.+....|.+
T Consensus 5 ~i~~~sllLvIiGalNWGLvG~f~fdLvaalfG~gs~lsri~Yii 49 (79)
T COG2155 5 IIRGLSLLLVILGALNWGLVGLFGFDLVAALFGVGSMLTRIIYII 49 (79)
T ss_pred HHHHHHHHHHHHhhhhhceeeeehhhHHHHHHcCchHHHHHHHHH
Confidence 34567888888888743 446667888887777667666666654
No 104
>COG3296 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=23.55 E-value=2.4e+02 Score=21.21 Aligned_cols=27 Identities=22% Similarity=0.277 Sum_probs=15.5
Q ss_pred HHHHHHHhhhhhheecccccchHHHHH
Q 026910 134 LSVLLTATGCVIAALGDFSFDLSGYSM 160 (231)
Q Consensus 134 ~s~~l~~~Gv~l~~~~~~~~~~~G~~~ 160 (231)
.+.+++.+|+.++.......+..|++.
T Consensus 75 vs~vLil~g~~la~t~~~~i~~ig~~l 101 (143)
T COG3296 75 VSFVLILAGVFLAATDISFIIIIGFFL 101 (143)
T ss_pred HHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 567777777776654444344444444
No 105
>COG3274 Predicted O-acyltransferase [General function prediction only]
Probab=23.21 E-value=5.2e+02 Score=22.71 Aligned_cols=61 Identities=15% Similarity=0.265 Sum_probs=46.9
Q ss_pred HHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChH--HHHHHHHHHhhhhhhe
Q 026910 87 NANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQ--VTLSVLLTATGCVIAA 147 (231)
Q Consensus 87 ~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~--~~~s~~l~~~Gv~l~~ 147 (231)
..+.......+.+.+.+.++--+-+.++.=.+.+..+..++...+ .+.+..+.++|+.+..
T Consensus 157 ~~~l~~~~~~~~~~~~~l~~~~~~f~yi~Y~ilG~~l~~~~~~~~~~~~~a~~l~~~~~~~t~ 219 (332)
T COG3274 157 ASTLPFLYGGFSWLPIDLYIYGDTFYYILYYILGRYLGTRQTQGKKISRLALALFVLGVIFTF 219 (332)
T ss_pred cccchhhhcccccCCcchhhhCCchHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHH
Confidence 344444555667779999999999999998888888876655555 8889999999999853
No 106
>PF06379 RhaT: L-rhamnose-proton symport protein (RhaT); InterPro: IPR004673 These proteins are members of the L-Rhamnose Symporter (RhaT) family. This family includes two characterised members, both of which function as L-rhamnose:H+ symporters and have 10 GES predicted transmembrane domains.; GO: 0015153 rhamnose transmembrane transporter activity, 0008645 hexose transport, 0016021 integral to membrane
Probab=23.12 E-value=2.4e+02 Score=24.84 Aligned_cols=67 Identities=13% Similarity=-0.004 Sum_probs=47.7
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHhcCCCCCChhHHHHHHhhhHHHHHHHHHHHhCChHHHHHHhhhhccce
Q 026910 155 LSGYSMALTSVFFQTMYLVLVEKSGAEDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPGSLSLLFSKVRIF 225 (231)
Q Consensus 155 ~~G~~~~l~s~~~~a~~~v~~~~~~~~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~~~~~~~~~~~~~~ 225 (231)
..|.++..+..++++.+-+-.||.. -=++|..+-..-+-..+.+|.....=+.|++.+.+.+.|++-
T Consensus 6 i~Gii~h~iGg~~~~sfy~P~kkvk----~WsWEs~Wlv~gi~swli~P~~~a~l~ip~~~~i~~~~~~~~ 72 (344)
T PF06379_consen 6 ILGIIFHAIGGFASGSFYVPFKKVK----GWSWESYWLVQGIFSWLIVPWLWALLAIPDFFSIYSATPAST 72 (344)
T ss_pred HHHHHHHHHHHHHhhhhccchhhcC----CccHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHhCChhH
Confidence 5899999999999999999888873 256888875543333444454444336788888888877653
No 107
>KOG1443 consensus Predicted integral membrane protein [Function unknown]
Probab=22.95 E-value=4.5e+02 Score=23.05 Aligned_cols=69 Identities=9% Similarity=-0.046 Sum_probs=49.0
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhh
Q 026910 78 KLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIA 146 (231)
Q Consensus 78 ~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~ 146 (231)
.+...|++-.........-+.-+++=+-.+.--.+-+.+.+.+.++.+++.+...|.+......|+..-
T Consensus 245 ~i~l~g~laF~l~~sEflLl~~Ts~ltlSIaGI~Kel~tl~la~ii~~d~ls~lN~~Gl~i~~agi~~~ 313 (349)
T KOG1443|consen 245 LISLGGLLAFLLEFSEFLLLSRTSSLTLSIAGIVKEVCTLLLAIIILKDQLSLLNWLGLAICLAGILLH 313 (349)
T ss_pred HHHHHHHHHHHHHHHHHheeeeccceeeeHHHHHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHh
Confidence 344444444444444555555666666666677777888888889999999999999999988888876
No 108
>PF03812 KdgT: 2-keto-3-deoxygluconate permease; InterPro: IPR004684 This family includes the characterised 2-Keto-3-Deoxygluconate transporters from Bacillus subtilis and Erwinia chrysanthemi. There are homologs of this protein found in both Gram-positive and Gram-negative bacteria. In E. chrysanthemi, a phytopathogenic bacterium, degraded pectin products from plant cell walls are transported by 2-keto-3-deoxygluconate permease into the bacterial cell to provide a carbon and energy source []. 2-keto-3-deoxygluconate permease can mediate the uptake of glucuronate with a low affinity [].; GO: 0015649 2-keto-3-deoxygluconate:hydrogen symporter activity, 0008643 carbohydrate transport, 0046411 2-keto-3-deoxygluconate transport, 0016021 integral to membrane
Probab=22.60 E-value=5.2e+02 Score=22.54 Aligned_cols=78 Identities=18% Similarity=0.099 Sum_probs=59.1
Q ss_pred hhHHHHHHHhHHHHHHHHHHHhcCCCCChHHH-HHHHHHHhhhhhheeccc------------------------c----
Q 026910 102 IPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVT-LSVLLTATGCVIAALGDF------------------------S---- 152 (231)
Q Consensus 102 v~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~-~s~~l~~~Gv~l~~~~~~------------------------~---- 152 (231)
-++..+.-..-|.++++.--.-.-..+++... .+++++++|.++...++. +
T Consensus 140 gA~~i~sl~~GPf~tMl~LG~sG~a~ip~~~lv~~llP~iiG~iLGNLD~~~r~fl~~~~~~lIPF~~f~lGa~inl~~i 219 (314)
T PF03812_consen 140 GAFSILSLNDGPFFTMLALGASGLANIPWMSLVAALLPIIIGMILGNLDPDFRKFLAPGVPILIPFFGFALGAGINLSNI 219 (314)
T ss_pred HHHHHHHhhhhHHHHHHHHhhccccCCCHHHHHHHHHHHHHHHHHhcCCHHHHHHHhcCCCeeeehhhhhhcCCCCHHHH
Confidence 34555666778999998777776678888766 788999999998654320 1
Q ss_pred --cchHHHHHHHHHHHHHHHHHHHHHHhc
Q 026910 153 --FDLSGYSMALTSVFFQTMYLVLVEKSG 179 (231)
Q Consensus 153 --~~~~G~~~~l~s~~~~a~~~v~~~~~~ 179 (231)
-...|.++.+...+..+.-..+.+|..
T Consensus 220 ~~aGl~GIlLgv~~~~vtg~~~~~~dr~i 248 (314)
T PF03812_consen 220 IKAGLSGILLGVIVVVVTGIPLYLADRLI 248 (314)
T ss_pred HHhCcchHHHHHHHHHHHhHHHHHHHHHH
Confidence 125899999999999999888888875
No 109
>PRK07668 hypothetical protein; Validated
Probab=22.19 E-value=4.8e+02 Score=21.98 Aligned_cols=7 Identities=14% Similarity=0.292 Sum_probs=3.0
Q ss_pred HHHHHHH
Q 026910 30 FINKAVI 36 (231)
Q Consensus 30 ~~nK~ll 36 (231)
...|..+
T Consensus 127 ~~r~~~f 133 (254)
T PRK07668 127 LLRMASF 133 (254)
T ss_pred HHHHHHH
Confidence 3344444
No 110
>PRK02237 hypothetical protein; Provisional
Probab=22.10 E-value=2.7e+02 Score=20.18 Aligned_cols=45 Identities=11% Similarity=0.086 Sum_probs=36.0
Q ss_pred HHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheec
Q 026910 105 YIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG 149 (231)
Q Consensus 105 ~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~ 149 (231)
|..--....+...+..+..-|+++++..+++..+..+|+.+.-+.
T Consensus 62 YAAYGGvyI~~Sl~W~w~vdg~~Pd~~D~iGa~v~L~G~~iI~~~ 106 (109)
T PRK02237 62 YAAYGGVYVAGSLLWLWVVDGVRPDRWDWIGAAICLVGMAVIMYA 106 (109)
T ss_pred HHHhhhHHHHHHHHHHHHhcCcCCChhHHHhHHHHHHhHHHheec
Confidence 344445566677788888899999999999999999999887543
No 111
>COG3162 Predicted membrane protein [Function unknown]
Probab=21.28 E-value=3.1e+02 Score=19.59 Aligned_cols=48 Identities=8% Similarity=-0.018 Sum_probs=32.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHhc--CCCc----HHHHHHHHHHHHHHHHHHHH
Q 026910 15 LFAALSYGVSSMAMVFINKAVIMQ--YAHS----MTLLTLQQLATALLIQAGRQ 62 (231)
Q Consensus 15 ~~~~~~~~~~s~~~~~~nK~ll~~--~~~p----~~l~~~q~~~~~~~~~~~~~ 62 (231)
-+..+.|++..+.++-.||-.+.. +|-. ..+...|++.++++..++..
T Consensus 30 tl~flv~Y~~filLiaf~~~~l~tp~~~~~Vt~Gip~gvg~fv~tfVlt~IYv~ 83 (102)
T COG3162 30 TLIFLVVYFGFILLIAFAPGWLATPLFGASVTRGIPFGVGVFVMTFVLTGIYVR 83 (102)
T ss_pred HHHHHHHHHHHHHHHHhhHHHhcCcccCCceehhHhHHHHHHHHHHHHHHHHhh
Confidence 355678888888888899954542 2221 12557788888888777643
No 112
>PRK00259 intracellular septation protein A; Reviewed
Probab=20.97 E-value=4.3e+02 Score=20.92 Aligned_cols=68 Identities=18% Similarity=0.169 Sum_probs=33.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhc-CCCCChHHHHHHHHHHhh-hhhheecccc
Q 026910 75 TAKKLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSG-KGKPTTQVTLSVLLTATG-CVIAALGDFS 152 (231)
Q Consensus 75 ~~~~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~-~~~~s~~~~~s~~l~~~G-v~l~~~~~~~ 152 (231)
...+..|.-+++..+... +.+...-...+.....+.+... ++|.++..+++.+++++- .+-.-.+|..
T Consensus 3 ~l~d~~P~i~Ffv~y~~~----------gi~~AT~~~i~a~~~~~~~~~~~~~~v~~m~~i~~~lv~vfGglTl~l~d~~ 72 (179)
T PRK00259 3 QLLDFLPLILFFAAYKLY----------GIYAATAALIVATVIQLAISWIRYRKVEKMQLISLVVVVVFGGLTLVFHDDT 72 (179)
T ss_pred hHHHHHHHHHHHHHHHHc----------CHHHHHHHHHHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHHHHHHHhCCCC
Confidence 345677777777766431 2333333333333333333333 457777777555444433 3333345543
No 113
>PF01066 CDP-OH_P_transf: CDP-alcohol phosphatidyltransferase; InterPro: IPR000462 A number of phosphatidyltransferases, which are all involved in phospholipid biosynthesis and that share the property of catalyzing the displacement of CMP from a CDP-alcohol by a second alcohol with formation of a phosphodiester bond and concomitant breaking of a phosphoride anhydride bond share a conserved sequence region [, ]. These enzymes are proteins of 200 to 400 amino acid residues. The conserved region contains three aspartic acid residues and is located in the N-terminal section of the sequences.; GO: 0016780 phosphotransferase activity, for other substituted phosphate groups, 0008654 phospholipid biosynthetic process, 0016020 membrane
Probab=20.45 E-value=3e+02 Score=18.98 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=38.1
Q ss_pred CCChHHHHHHHHHHhhhhhheecccccchHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 026910 127 KPTTQVTLSVLLTATGCVIAALGDFSFDLSGYSMALTSVFFQTMYLVLVEKSGAE 181 (231)
Q Consensus 127 ~~s~~~~~s~~l~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~~a~~~v~~~~~~~~ 181 (231)
.++..+..+++....+......++. ...+.++..++.+++++=+...|+..++
T Consensus 4 ~pN~iT~~~~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~D~~DG~lAR~~~~~ 56 (101)
T PF01066_consen 4 TPNAITLLRLLLGFLAALLLLQGRP--LLLAALLLFLAFLLDGLDGWLARRRNQS 56 (101)
T ss_pred chHHHHHHHHHHHHHHHHHHHHccH--HHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 4555666666666665555544443 4688999999999999999999888643
Done!