Query 026910
Match_columns 231
No_of_seqs 131 out of 1195
Neff 8.6
Searched_HMMs 29240
Date Tue Mar 26 01:17:07 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026910.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/026910hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3b5d_A Multidrug transporter E 98.4 2.2E-06 7.4E-11 61.8 9.4 72 79-150 33-105 (110)
2 2i68_A Protein EMRE; transmemb 98.2 2.5E-06 8.5E-11 63.8 5.7 70 80-149 34-104 (137)
3 4dve_A Biotin transporter BIOY 14.3 4.2E+02 0.014 20.2 8.9 103 70-179 10-121 (198)
4 1v54_M VIIIB, IX, cytochrome C 7.5 3.9E+02 0.013 15.3 4.1 33 181-213 7-39 (46)
5 2y69_M Cytochrome C oxidase po 4.7 7.3E+02 0.025 15.5 4.2 33 181-213 31-63 (70)
6 2kv5_A FST, putative uncharact 3.4 5.1E+02 0.017 13.7 1.3 12 135-146 8-19 (33)
7 2l42_A DNA-binding protein RAP 3.4 5.2E+02 0.018 17.6 1.7 20 210-229 31-50 (106)
8 3dh4_A Sodium/glucose cotransp 3.0 1.1E+03 0.038 20.4 4.0 9 200-208 464-472 (530)
9 1wgn_A UBAP1, ubiquitin associ 2.7 7E+02 0.024 15.3 1.6 15 209-223 45-59 (63)
10 2ww9_C Protein transport prote 2.4 1.1E+03 0.038 15.4 2.4 15 47-61 68-82 (87)
No 1
>3b5d_A Multidrug transporter EMRE; helical membrane protein, multidrug resistance transporter, SMR, antiport, inner membrane, transmembrane; HET: P4P; 3.80A {Escherichia coli K12} PDB: 3b61_A 3b62_A*
Probab=98.39 E-value=2.2e-06 Score=61.78 Aligned_cols=72 Identities=13% Similarity=0.098 Sum_probs=64.5
Q ss_pred HHHHHHHHHHHHHHHHHhccCCChhHHHHH-HHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheecc
Q 026910 79 LLPVSLFYNANVAFALASLKGVNIPMYIAI-KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALGD 150 (231)
Q Consensus 79 ~~~~~~~~~~~~~~~n~sl~~~sv~~~~il-k~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~~ 150 (231)
.+...+.+..+..+...++++.|++..-.+ ..+.|+.+.+.+.+++||++++.+++++.+++.|+......+
T Consensus 33 ~~~~~~~~~~~~~~~~~al~~~p~s~ay~i~~g~~~v~~~l~~~~~~~E~~s~~~~~Gi~lIi~Gv~~l~~~~ 105 (110)
T 3b5d_A 33 SVGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLLS 105 (110)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCChhhHHHHHhhHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcCC
Confidence 344456789999999999999999999888 899999999999999999999999999999999999876544
No 2
>2i68_A Protein EMRE; transmembrane protein, small-multidrug resistance, transporter, homodimer, dual topology, transport protein; NMR {Escherichia coli}
Probab=98.17 E-value=2.5e-06 Score=63.84 Aligned_cols=70 Identities=13% Similarity=0.108 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHHHHHHhccCCChhHHHHH-HHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhhheec
Q 026910 80 LPVSLFYNANVAFALASLKGVNIPMYIAI-KRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVIAALG 149 (231)
Q Consensus 80 ~~~~~~~~~~~~~~n~sl~~~sv~~~~il-k~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l~~~~ 149 (231)
+...+.+.+..++.+.++++.|++..-.+ ..+.|+++.+.+.+++||++++.+++++.++++|+.+....
T Consensus 34 ~l~i~~~~ls~~l~~~alk~i~~s~ay~iw~~l~pv~~~l~g~l~lgE~ls~~~~~Gi~LIi~GV~ll~~~ 104 (137)
T 2i68_A 34 VGTIICYCASFWLLAQTLAYIPTGIAYAIWSGVGIVLISLLSWGFFGQRLDLPAIIGMMLICAGVLIINLL 104 (137)
T ss_dssp CHHHHHHHHHHHHHHHHHC-----CHHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHhcC
Confidence 44456789999999999999999988777 99999999999999999999999999999999999987543
No 3
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=14.29 E-value=4.2e+02 Score=20.19 Aligned_cols=103 Identities=18% Similarity=0.241 Sum_probs=57.6
Q ss_pred CCCH-HHHHHHHHHHHHHHHHHHHHHHh---ccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHHhhhhh
Q 026910 70 AIDL-MTAKKLLPVSLFYNANVAFALAS---LKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTATGCVI 145 (231)
Q Consensus 70 ~~~~-~~~~~~~~~~~~~~~~~~~~n~s---l~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~~Gv~l 145 (231)
..+. ++.|++...+++-++...++..+ +-..|+|. .+....+++.+.++..++=.....+=+++..+|.=+
T Consensus 10 am~~~~k~r~l~~~alfaAliavla~i~~Ipip~~pVPi-----TlQtl~V~LaG~~LG~r~G~lsv~lYlllG~~GlPV 84 (198)
T 4dve_A 10 AMTNNQKVKTLTYSAFMTAFIIILGFLPGIPIGFIPVPI-----ILQNMGIMMAGGLLGPKYGTISVGAFLALALIGLPV 84 (198)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHTTSCCBCCSSSSCCB-----CSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred HhhccHHHHHHHHHHHHHHHHHHHHHhccCCCCCCCcCc-----cHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHcCcc
Confidence 3444 36777777787777776666553 44455664 456677777777765544333444444555555555
Q ss_pred heecc--cc-c--chHHHHHHHHHHHHHHHHHHHHHHhc
Q 026910 146 AALGD--FS-F--DLSGYSMALTSVFFQTMYLVLVEKSG 179 (231)
Q Consensus 146 ~~~~~--~~-~--~~~G~~~~l~s~~~~a~~~v~~~~~~ 179 (231)
.+.+. .. + .-.|++++..-+..-+.+ ..||..
T Consensus 85 Fagg~gG~~~l~gPTgGYLiGF~~aA~v~G~--l~~~~~ 121 (198)
T 4dve_A 85 LTGGNGGAASFLGPSGGYRIAWLFTPFLIGF--FLKKLK 121 (198)
T ss_dssp BTTTBCCSGGGGSTTHHHHHHHHHHHHHHHH--HHHHTT
T ss_pred ccCCCCchhHHhcchhHHHHHHHHHHHHHHH--HHHHcc
Confidence 44332 21 1 237888777655444433 344543
No 4
>1v54_M VIIIB, IX, cytochrome C oxidase polypeptide VIII-heart; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: f.23.7.1 PDB: 1oco_M* 1occ_M* 1ocz_M* 1ocr_M* 1v55_M* 2dyr_M* 2dys_M* 2eij_M* 2eik_M* 2eil_M* 2eim_M* 2ein_M* 2occ_M* 2ybb_X* 2zxw_M* 3abk_M* 3abl_M* 3abm_M* 3ag1_M* 3ag2_M* ...
Probab=7.46 E-value=3.9e+02 Score=15.33 Aligned_cols=33 Identities=21% Similarity=-0.013 Sum_probs=25.1
Q ss_pred CCCCChhHHHHHHhhhHHHHHHHHHHHhCChHH
Q 026910 181 EDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPG 213 (231)
Q Consensus 181 ~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~~ 213 (231)
+.++++.|...-...+...++.|.+.+...+++
T Consensus 7 ~~~~s~~E~aigl~v~f~~~L~PagWVLshL~~ 39 (46)
T 1v54_M 7 KTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDN 39 (46)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 356889999888887888888888877755554
No 5
>2y69_M Cytochrome C oxidase polypeptide 8H; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=4.68 E-value=7.3e+02 Score=15.54 Aligned_cols=33 Identities=21% Similarity=-0.013 Sum_probs=25.6
Q ss_pred CCCCChhHHHHHHhhhHHHHHHHHHHHhCChHH
Q 026910 181 EDGLSSVEIMFYNSFLSLPFLVFLIIVTGEFPG 213 (231)
Q Consensus 181 ~~~~~~~~~~~y~~~~~~~~l~~~~~~~ge~~~ 213 (231)
+.+.++.|...-...+...++.|.+.+..++++
T Consensus 31 ~~~~s~~E~aigltv~f~~~L~PagWVLshLe~ 63 (70)
T 2y69_M 31 KTPTSPKEQAIGLSVTFLSFLLPAGWVLYHLDN 63 (70)
T ss_dssp SSCCCHHHHHHHHHHHHHHHHHHHHHHHHTHHH
T ss_pred CCCcCHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 467899999998888888888888877655544
No 6
>2kv5_A FST, putative uncharacterized protein RNAI; toxin-antitoxin, bacterial, toxin; NMR {Enterococcus faecalis}
Probab=3.42 E-value=5.1e+02 Score=13.70 Aligned_cols=12 Identities=17% Similarity=0.196 Sum_probs=7.4
Q ss_pred HHHHHHhhhhhh
Q 026910 135 SVLLTATGCVIA 146 (231)
Q Consensus 135 s~~l~~~Gv~l~ 146 (231)
-+.++++|+++.
T Consensus 8 IIaPivVGvvl~ 19 (33)
T 2kv5_A 8 VIAPIFVGLVLE 19 (33)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 355667777654
No 7
>2l42_A DNA-binding protein RAP1; BRCT domain, protein binding; NMR {Saccharomyces cerevisiae}
Probab=3.41 E-value=5.2e+02 Score=17.56 Aligned_cols=20 Identities=10% Similarity=0.001 Sum_probs=16.5
Q ss_pred ChHHHHHHhhhhccceeccc
Q 026910 210 EFPGSLSLLFSKVRIFVQSL 229 (231)
Q Consensus 210 e~~~~~~~~~~~~~~~~~~~ 229 (231)
|.+++-+.+..++|+++..+
T Consensus 31 d~d~L~~lI~~nGG~Vl~~l 50 (106)
T 2l42_A 31 DIDQLARLIRANGGEVLDSK 50 (106)
T ss_dssp THHHHHHHHHTTTSCCCEEC
T ss_pred HHHHHHHHHHhcCcEEhhhC
Confidence 67888999999999887654
No 8
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus}
Probab=2.98 E-value=1.1e+03 Score=20.41 Aligned_cols=9 Identities=22% Similarity=0.416 Sum_probs=3.4
Q ss_pred HHHHHHHHh
Q 026910 200 FLVFLIIVT 208 (231)
Q Consensus 200 ~l~~~~~~~ 208 (231)
....+++.+
T Consensus 464 ~~v~vSl~t 472 (530)
T 3dh4_A 464 VIAFTSLST 472 (530)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHhhc
Confidence 333334443
No 9
>1wgn_A UBAP1, ubiquitin associated protein; ubiquitin associated protein 1 (UBAP1), UBA domain, structural genomics; NMR {Homo sapiens} SCOP: a.5.2.1
Probab=2.73 E-value=7e+02 Score=15.27 Aligned_cols=15 Identities=20% Similarity=0.290 Sum_probs=11.4
Q ss_pred CChHHHHHHhhhhcc
Q 026910 209 GEFPGSLSLLFSKVR 223 (231)
Q Consensus 209 ge~~~~~~~~~~~~~ 223 (231)
|+++++.+++.+++.
T Consensus 45 ~NvErAaDWLFSH~D 59 (63)
T 1wgn_A 45 ENIEQILDYLFAHSG 59 (63)
T ss_dssp SCHHHHHHHHHHHSC
T ss_pred CCHHHHHHHHHhCCC
Confidence 468888888887764
No 10
>2ww9_C Protein transport protein SEB2; ribonucleoprotein, transmembrane, phospho signal sequence, membrane, ribosome, transport; 8.60A {Saccharomyces cerevisiae} PDB: 2wwa_C
Probab=2.44 E-value=1.1e+03 Score=15.35 Aligned_cols=15 Identities=0% Similarity=0.038 Sum_probs=4.9
Q ss_pred HHHHHHHHHHHHHHH
Q 026910 47 TLQQLATALLIQAGR 61 (231)
Q Consensus 47 ~~q~~~~~~~~~~~~ 61 (231)
.+-++...+++.++.
T Consensus 68 sl~FIa~VilLHI~g 82 (87)
T 2ww9_C 68 SVGFIFSVIALHLLT 82 (87)
T ss_dssp HHHHHHHHHHC----
T ss_pred HHHHHHHHHHHHHhh
Confidence 344444444444443
Done!