Query 026910
Match_columns 231
No_of_seqs 131 out of 1195
Neff 8.6
Searched_HMMs 13730
Date Tue Mar 26 01:17:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026910.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/026910hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2e74g1 f.23.26.1 (G:9-35) Pet 16.8 55 0.004 15.0 2.8 19 156-174 3-21 (27)
2 d2r6gf1 e.70.1.1 (F:13-260) Ma 7.1 4.1E+02 0.03 19.1 8.0 59 78-140 4-62 (248)
3 d2ckaa1 d.76.2.1 (A:2028-2085) 4.3 1.7E+02 0.013 16.2 1.4 18 211-228 28-45 (58)
4 d1uptb_ a.193.1.1 (B:) Golgi a 4.0 1.6E+02 0.011 16.4 1.0 21 117-137 11-31 (58)
5 d2h5na1 a.287.1.2 (A:1-132) Hy 3.1 4.5E+02 0.033 15.9 2.8 28 139-167 89-116 (132)
6 d1iwga8 f.35.1.1 (A:513-566,A: 3.0 7.4E+02 0.054 16.7 11.3 97 114-210 68-181 (222)
7 d1b0nb_ a.34.1.1 (B:) SinI ant 2.7 3.6E+02 0.026 12.3 1.4 14 68-81 16-29 (31)
8 d2v0fa1 d.76.2.1 (A:2629-2715) 2.2 3.4E+02 0.025 16.3 1.3 18 211-228 38-55 (87)
9 d1uaza_ f.13.1.1 (A:) Archaerh 2.2 1E+03 0.073 16.4 8.3 6 203-208 192-197 (236)
10 d1r11a3 d.75.1.1 (A:3-60) Dime 2.0 4.4E+02 0.032 13.7 1.4 13 208-220 44-56 (58)
No 1
>d2e74g1 f.23.26.1 (G:9-35) PetG subunit of the cytochrome b6f complex {Mastigocladus laminosus [TaxId: 83541]}
Probab=16.82 E-value=55 Score=15.00 Aligned_cols=19 Identities=21% Similarity=0.246 Sum_probs=14.3
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 026910 156 SGYSMALTSVFFQTMYLVL 174 (231)
Q Consensus 156 ~G~~~~l~s~~~~a~~~v~ 174 (231)
.|.+..-++.+++|.|.-+
T Consensus 3 lgli~~tl~glf~aayqqy 21 (27)
T d2e74g1 3 LGLVFATLGGLFYAAYQQY 21 (27)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred eeehHHHHHHHHHHHHHHh
Confidence 5778888888888887643
No 2
>d2r6gf1 e.70.1.1 (F:13-260) Maltose transport system permease protein MalF {Escherichia coli [TaxId: 562]}
Probab=7.05 E-value=4.1e+02 Score=19.06 Aligned_cols=59 Identities=8% Similarity=-0.115 Sum_probs=39.6
Q ss_pred HHHHHHHHHHHHHHHHHHhccCCChhHHHHHHHhHHHHHHHHHHHhcCCCCChHHHHHHHHHH
Q 026910 78 KLLPVSLFYNANVAFALASLKGVNIPMYIAIKRLTPLAVLVAGFFSGKGKPTTQVTLSVLLTA 140 (231)
Q Consensus 78 ~~~~~~~~~~~~~~~~n~sl~~~sv~~~~ilk~~~pi~~~l~~~~~~~~~~s~~~~~s~~l~~ 140 (231)
++..++++.++..+.-...+..-+..+.. ...+.+.++.++++.+|.-+.|++.=.++.
T Consensus 4 K~~ll~l~~a~~~~~~~~~~~~~~~~~a~----~~~~~~~~~~~vy~s~r~~p~kyi~PG~~~ 62 (248)
T d2r6gf1 4 KWSVLGLLGLLVGYLVVLMYAQGEYLFAI----TTLILSSAGLYIFANRKAYAWRYVYPGMAG 62 (248)
T ss_dssp THHHHHHHHHHHHHTHHHHHGGGCHHHHH----HHHHHHHHHHHHHSSSCCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHcchHHHHH----HHHHHHHheEEEEEccCccceehhhhHHHH
Confidence 56777888777777777776666665533 455667778888887777676665433333
No 3
>d2ckaa1 d.76.2.1 (A:2028-2085) Chromodomain-helicase-dna-binding protein 8, CHD8 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.33 E-value=1.7e+02 Score=16.25 Aligned_cols=18 Identities=11% Similarity=-0.114 Sum_probs=15.0
Q ss_pred hHHHHHHhhhhccceecc
Q 026910 211 FPGSLSLLFSKVRIFVQS 228 (231)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~ 228 (231)
..++-+++..||++-+.|
T Consensus 28 ~~~L~~WL~~nP~y~V~P 45 (58)
T d2ckaa1 28 RAELEMWLQGHPEFAVDP 45 (58)
T ss_dssp HHHHHHHHHHCTTEEECH
T ss_pred HHHHHHHHHHCCCCEECh
Confidence 567888999999988876
No 4
>d1uptb_ a.193.1.1 (B:) Golgi autoantigen, golgin-245 {Human (Homo sapiens) [TaxId: 9606]}
Probab=4.00 E-value=1.6e+02 Score=16.38 Aligned_cols=21 Identities=10% Similarity=0.317 Sum_probs=14.5
Q ss_pred HHHHHHhcCCCCChHHHHHHH
Q 026910 117 LVAGFFSGKGKPTTQVTLSVL 137 (231)
Q Consensus 117 ~l~~~~~~~~~~s~~~~~s~~ 137 (231)
++..+..++|..+..++++.+
T Consensus 11 vLfeYMmG~E~~tlaKVi~av 31 (58)
T d1uptb_ 11 VLFEYMMGRETKTMAKVITTV 31 (58)
T ss_dssp HHHHHHTTSSHHHHHHHHHHH
T ss_pred HHHHHHcCcchhHHHHHHHHH
Confidence 466777788777777766544
No 5
>d2h5na1 a.287.1.2 (A:1-132) Hypothetical protein PG1108 {Porphyromonas gingivalis [TaxId: 837]}
Probab=3.14 E-value=4.5e+02 Score=15.87 Aligned_cols=28 Identities=21% Similarity=0.217 Sum_probs=19.5
Q ss_pred HHhhhhhheecccccchHHHHHHHHHHHH
Q 026910 139 TATGCVIAALGDFSFDLSGYSMALTSVFF 167 (231)
Q Consensus 139 ~~~Gv~l~~~~~~~~~~~G~~~~l~s~~~ 167 (231)
.-.|+.+++-+|.+-| .=.+|.++|.+|
T Consensus 89 sylgvimasdgdiddn-elalwtlistlc 116 (132)
T d2h5na1 89 SYLGVIMASDGDIDDN-ELALWTLISTLC 116 (132)
T ss_dssp HHHHHHSCBTTBCCHH-HHHHHHHHHHHH
T ss_pred HHhhheeccCCCCCcc-HhHHHHHHHHHh
Confidence 4568888888877665 334677777665
No 6
>d1iwga8 f.35.1.1 (A:513-566,A:869-1036) Multidrug efflux transporter AcrB transmembrane domain {Escherichia coli [TaxId: 562]}
Probab=3.01 E-value=7.4e+02 Score=16.74 Aligned_cols=97 Identities=18% Similarity=0.168 Sum_probs=42.6
Q ss_pred HHHHHHHHHhcCC-CCChHHHHHHHHHHhhhhhhe-ecccccc---hHHHHHHHHHHHHHHHHHHHHH-HhcCCCCCChh
Q 026910 114 LAVLVAGFFSGKG-KPTTQVTLSVLLTATGCVIAA-LGDFSFD---LSGYSMALTSVFFQTMYLVLVE-KSGAEDGLSSV 187 (231)
Q Consensus 114 i~~~l~~~~~~~~-~~s~~~~~s~~l~~~Gv~l~~-~~~~~~~---~~G~~~~l~s~~~~a~~~v~~~-~~~~~~~~~~~ 187 (231)
+.+.++-.+.+|. +.+.....++.+.++|+.... ..+.++| ..|.+..+.-..-++...+-.. +..++++.++.
T Consensus 68 i~i~liL~~~frS~~~~liv~~~ipl~~~~~~~~l~~~g~~~~~~~~~g~i~l~Gi~v~~~i~~~~~~~~~~~~~g~~~~ 147 (222)
T d1iwga8 68 IVVFLCLAALYESWSIPFSVMLVVPLGVIGALLAATFRGLTNDVYFQVGLLTTIGLSAKNAILIVEFAKDLMDKEGKGLI 147 (222)
T ss_dssp HHHHHHHHHTTCSSSHHHHGGGHHHHHHHHHHHHHHHTTCCBCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCCCTT
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCCchhhhhcccccchhhhhhhHHHHHHHHhccccccccCCHH
Confidence 3333344444443 222333344445555554432 2333333 3555555555555555444322 22222223332
Q ss_pred -----------HHHHHHhhhHHHHHHHHHHHhCC
Q 026910 188 -----------EIMFYNSFLSLPFLVFLIIVTGE 210 (231)
Q Consensus 188 -----------~~~~y~~~~~~~~l~~~~~~~ge 210 (231)
.-...+++....-++|.++..|.
T Consensus 148 ~Ai~~a~~~~~~~i~~t~ltti~gf~pl~~~~~~ 181 (222)
T d1iwga8 148 EATLDAVRMRLRPILMTSLAFILGVMPLVISTGA 181 (222)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHhhhhhhhHHHHHHHHHHHHhcccc
Confidence 23345555555666666665554
No 7
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=2.66 E-value=3.6e+02 Score=12.28 Aligned_cols=14 Identities=21% Similarity=0.154 Sum_probs=9.2
Q ss_pred CCCCCHHHHHHHHH
Q 026910 68 SKAIDLMTAKKLLP 81 (231)
Q Consensus 68 ~~~~~~~~~~~~~~ 81 (231)
..++++++.+++++
T Consensus 16 eanispeeirkyll 29 (31)
T d1b0nb_ 16 EANISPEEIRKYLL 29 (31)
T ss_dssp HTTCCHHHHHHHHH
T ss_pred HcCCCHHHHHHHHh
Confidence 34677777777654
No 8
>d2v0fa1 d.76.2.1 (A:2629-2715) Chromodomain-helicase-DNA-binding protein 7, CHD7 {Human (Homo sapiens) [TaxId: 9606]}
Probab=2.21 E-value=3.4e+02 Score=16.26 Aligned_cols=18 Identities=11% Similarity=-0.038 Sum_probs=13.7
Q ss_pred hHHHHHHhhhhccceecc
Q 026910 211 FPGSLSLLFSKVRIFVQS 228 (231)
Q Consensus 211 ~~~~~~~~~~~~~~~~~~ 228 (231)
..++-+++..||++-+.|
T Consensus 38 ~~~L~~WL~~nP~y~V~P 55 (87)
T d2v0fa1 38 MKDLPRWLEENPEFAVAP 55 (87)
T ss_dssp GGGHHHHHHHCTTEEECH
T ss_pred HHHHHHHHHHCCCceeCc
Confidence 567778888888887765
No 9
>d1uaza_ f.13.1.1 (A:) Archaerhodopsin-1 {Archaeon Halobacterium sp. [TaxId: 2243]}
Probab=2.18 E-value=1e+03 Score=16.36 Aligned_cols=6 Identities=0% Similarity=0.141 Sum_probs=3.0
Q ss_pred HHHHHh
Q 026910 203 FLIIVT 208 (231)
Q Consensus 203 ~~~~~~ 208 (231)
|+....
T Consensus 192 Pi~~~l 197 (236)
T d1uaza_ 192 PILWII 197 (236)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555444
No 10
>d1r11a3 d.75.1.1 (A:3-60) Dimeric tRNA splicing endonuclease, domains 1 and 3 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}
Probab=2.03 E-value=4.4e+02 Score=13.66 Aligned_cols=13 Identities=38% Similarity=0.289 Sum_probs=0.0
Q ss_pred hCChHHHHHHhhh
Q 026910 208 TGEFPGSLSLLFS 220 (231)
Q Consensus 208 ~ge~~~~~~~~~~ 220 (231)
.||+++.+++..+
T Consensus 44 fgeledvlswaes 56 (58)
T d1r11a3 44 FGELEDVLSWAES 56 (58)
T ss_dssp CSCHHHHHHHHHT
T ss_pred hccHHHHHHHHHh
Done!