Query 026912
Match_columns 231
No_of_seqs 192 out of 1152
Neff 3.9
Searched_HMMs 46136
Date Fri Mar 29 14:26:49 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026912.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026912hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02375 molybderin biosynthes 100.0 3.7E-89 8E-94 607.8 23.9 228 2-229 10-269 (270)
2 PRK09364 moaC molybdenum cofac 100.0 7.8E-76 1.7E-80 494.1 20.2 157 74-230 2-158 (159)
3 COG0315 MoaC Molybdenum cofact 100.0 4.3E-75 9.4E-80 487.1 18.1 156 74-230 2-157 (157)
4 TIGR00581 moaC molybdenum cofa 100.0 1.3E-72 2.8E-77 469.6 19.5 147 76-224 1-147 (147)
5 PRK14499 molybdenum cofactor b 100.0 2.2E-70 4.8E-75 499.5 20.1 156 75-230 2-157 (308)
6 cd01420 MoaC_PE MoaC family, p 100.0 6.2E-70 1.3E-74 450.4 18.5 140 87-226 1-140 (140)
7 PRK14500 putative bifunctional 100.0 1.4E-68 3E-73 492.0 19.7 154 75-228 1-158 (346)
8 PRK03604 moaC bifunctional mol 100.0 3.6E-68 7.8E-73 485.4 20.1 152 77-230 1-152 (312)
9 PRK12343 putative molybdenum c 100.0 5.5E-68 1.2E-72 443.2 19.0 143 78-223 1-150 (151)
10 cd00528 MoaC MoaC family. Memb 100.0 1.3E-67 2.9E-72 434.8 18.3 136 87-222 1-136 (136)
11 PF01967 MoaC: MoaC family; I 100.0 1E-67 2.3E-72 435.4 15.4 136 87-222 1-136 (136)
12 cd01419 MoaC_A MoaC family, ar 100.0 1.5E-65 3.2E-70 424.6 17.6 134 87-222 1-141 (141)
13 KOG2876 Molybdenum cofactor bi 99.8 1.4E-23 3E-28 190.9 -9.4 195 27-230 60-281 (323)
14 KOG2876 Molybdenum cofactor bi 72.3 0.6 1.3E-05 44.0 -1.9 149 75-230 17-200 (323)
15 PF09241 Herp-Cyclin: Herpesvi 43.8 4.3 9.3E-05 32.4 -1.4 16 138-153 2-17 (106)
16 TIGR00589 ogt O-6-methylguanin 43.1 20 0.00043 27.2 2.1 27 109-137 4-30 (80)
17 PF15391 DUF4614: Domain of un 37.6 18 0.00039 32.0 1.3 20 184-203 115-134 (181)
18 PF12374 Dmrt1: Double-sex mab 36.1 14 0.0003 28.0 0.3 17 146-162 3-19 (71)
19 PRK09444 pntB pyridine nucleot 33.9 23 0.00051 35.3 1.6 22 187-209 246-267 (462)
20 PF03461 TRCF: TRCF domain; I 32.2 36 0.00078 26.4 2.1 19 27-45 33-51 (101)
21 PRK00901 methylated-DNA--prote 30.0 39 0.00085 28.6 2.2 29 107-137 73-101 (155)
22 PF01035 DNA_binding_1: 6-O-me 26.5 35 0.00075 25.8 1.1 38 110-150 5-55 (85)
23 PLN00210 40S ribosomal protein 23.4 1.1E+02 0.0025 25.8 3.7 55 168-223 60-130 (141)
24 COG0740 ClpP Protease subunit 22.2 46 0.00099 29.8 1.2 21 190-210 69-89 (200)
25 PRK00474 rps9p 30S ribosomal p 21.4 1.3E+02 0.0028 25.2 3.7 55 168-223 60-123 (134)
26 TIGR01352 tonB_Cterm TonB fami 20.2 3E+02 0.0064 18.8 5.1 35 155-191 11-46 (74)
27 PF02233 PNTB: NAD(P) transhyd 20.1 35 0.00075 34.1 0.0 22 187-209 245-266 (463)
No 1
>PLN02375 molybderin biosynthesis protein CNX3
Probab=100.00 E-value=3.7e-89 Score=607.81 Aligned_cols=228 Identities=67% Similarity=0.977 Sum_probs=214.4
Q ss_pred hhhhhhccCcccccccccCCCcchh---hHHHHHHHHhHhhhcCCCCCCCCCCC---------------CCCchhhh-hh
Q 026912 2 ILRRLAAAFPHSRRFFSSNSNHDFA---SAIVDLNKEMESIFGEPPTSNGFSGS---------------VSNDFMAQ-EA 62 (231)
Q Consensus 2 ~lr~~~~~~~~s~~~fs~~~~~~~~---~~i~e~n~emes~Fge~p~~~g~~~~---------------~~n~~~~~-e~ 62 (231)
||||+++.+.+.+|+||+.++++|+ .+|+|||+||+|+||+.|++||.+.. .+.||++| |+
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 89 (270)
T PLN02375 10 FLRRFPAVVSPIKRAFSSRIDDEFDPQIMNINELNQEMQSIFGQEPSPDGPGTMDFSELKSSKIEPLRSKNIDFRQQIEY 89 (270)
T ss_pred HHhhcchhhhhHHHHhhhhcccccCchhccHHHHHHHHHHHhCCCCCCCCCCcccHhHhhhcccccccccCccHHHHhhh
Confidence 8999999999999999999999776 89999999999999999999998753 67788888 77
Q ss_pred hhcccCC-------------CCCCCCCCccCCCCCeeeecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHH
Q 026912 63 QLTSQKI-------------CDSTPGLTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSV 129 (231)
Q Consensus 63 ~~s~~~~-------------~~~~~~ltH~d~~G~~~MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~v 129 (231)
+.|+..+ ....+.|||+|++|+++|||||.|++|.|+|+|+|+|+|+++++++|++|.++|||||+|
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~m~~LTHld~~G~a~MVDVS~K~~T~R~A~A~G~I~ls~et~~~I~~g~~~KGDVLav 169 (270)
T PLN02375 90 HKSTHSSKNDSQAIEQYAKVASDMSKLTHVGIAGEAQMVDVSSKDNSKRTALACCKVILGKRVFDLVLANQMGKGDVLGV 169 (270)
T ss_pred hhccccccchHHHHHHHHHhhcCCCCCCcCCCCCCEEEEECCCCCCCceEEEEEEEEEECHHHHHHHHhCCCCCccHHHH
Confidence 7776532 123446999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHhhhhhcCCcccccccCCcceEEEEEEEcCCCceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCce
Q 026912 130 AKIAGISGAKHTSSLIPLCHNITLTHVRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKDI 209 (231)
Q Consensus 130 AriAgI~aAK~T~~LIPLCHpipLt~v~V~~~~~~~~~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~m 209 (231)
||||||||||||++||||||||||++|+|+|+++++.++|+|+|+|+|.++|||||||||||++||||||||||++||+|
T Consensus 170 ArIAGImAAKkTseLIPLCHPLpLt~V~Vdfei~~~~~~I~I~atVkt~gkTGVEMEALTaVSVAaLTIYDMcKAvDK~M 249 (270)
T PLN02375 170 AKIAGINGAKQTSSLIPLCHNIALTHVRVDLRLNPEDFSVDIEGEASCTGKTGVEMEAMTAVSVAGLTVYDMCKAASKDI 249 (270)
T ss_pred HHHHHHHHhhccccccccCCCcccceeEEEEEEcCCCCeEEEEEEEEEccCcchHHHHHHHHHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999999999999998888999999999999999999999999999999999999999999
Q ss_pred EEeeEEEEEeeCCcccccee
Q 026912 210 QITDVRLDRKTGGKSGDWCR 229 (231)
Q Consensus 210 ~I~~IrL~~K~GGKSg~~~~ 229 (231)
+|++|||++|+|||||+|.|
T Consensus 250 vI~~IrLl~K~GGKSG~~~r 269 (270)
T PLN02375 250 SITDVRLERKTGGKSGSWSR 269 (270)
T ss_pred EEeeeEEEEecCCcCCCccc
Confidence 99999999999999999986
No 2
>PRK09364 moaC molybdenum cofactor biosynthesis protein MoaC; Provisional
Probab=100.00 E-value=7.8e-76 Score=494.08 Aligned_cols=157 Identities=52% Similarity=0.739 Sum_probs=154.1
Q ss_pred CCCCccCCCCCeeeecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCc
Q 026912 74 PGLTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITL 153 (231)
Q Consensus 74 ~~ltH~d~~G~~~MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipL 153 (231)
+.|||+|++|+++|||||.|++|.|+|+|+|+|+|+++++++|++|.++|||||++||||||||||||++||||||||||
T Consensus 2 ~~ltHl~~~g~~~MVDVs~K~~t~R~A~A~g~I~l~~e~~~~i~~~~~~KGdvl~~AriAgi~aaK~T~~LIPlCHpi~i 81 (159)
T PRK09364 2 SQLTHINEQGRAKMVDVSDKAETVRTAVAEGSVRMSPETLALIRDGTAKKGDVLATARIAGIMAAKRTSDLIPLCHPLML 81 (159)
T ss_pred CCCccCCCCCCEEEEECCCCCCcccEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhhhcccCCCCcc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEcCCCceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCceEEeeEEEEEeeCCccccceec
Q 026912 154 THVRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKDIQITDVRLDRKTGGKSGDWCRE 230 (231)
Q Consensus 154 t~v~V~~~~~~~~~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~m~I~~IrL~~K~GGKSg~~~~~ 230 (231)
++|+|+|+++++..+|.|+|+|+|.++|||||||||||++||||||||||++||+|+|++|||++|+|||||+|.|+
T Consensus 82 ~~v~v~~~~~~~~~~i~i~~~v~~~~~TGVEMEALtavsva~LTiyDM~Kavdk~~~I~~i~L~~K~gGksg~~~~~ 158 (159)
T PRK09364 82 TGVDVDFEWDPELPGVRITATVKTTGKTGVEMEALTAVSVAALTIYDMCKAVDKGMVIGDVRLLEKSGGKSGDFKRE 158 (159)
T ss_pred ceEEEEEEEcCCCCeEEEEEEEEEccCCchHHHHHHHHHHHHHHHHHHHHhcCCCCEEeeEEEEEecCCcCCccccC
Confidence 99999999988777899999999999999999999999999999999999999999999999999999999999986
No 3
>COG0315 MoaC Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=100.00 E-value=4.3e-75 Score=487.08 Aligned_cols=156 Identities=51% Similarity=0.736 Sum_probs=152.5
Q ss_pred CCCCccCCCCCeeeecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCc
Q 026912 74 PGLTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITL 153 (231)
Q Consensus 74 ~~ltH~d~~G~~~MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipL 153 (231)
..|||+|++|+++|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++|||||||||||||+||||||||||
T Consensus 2 ~~lth~~~~g~a~MVDVs~K~~t~R~AvA~g~i~m~~et~~~I~~~~~~KGdVl~tAriAgimaaKkT~elIPlCHpi~l 81 (157)
T COG0315 2 GVLTHLDEQGEARMVDVSEKAETLREAVAEGFIRMKPETLAAIKEGKVKKGDVLATARIAGIMAAKRTSELIPLCHPLPL 81 (157)
T ss_pred CceEEEcCCCceeEEEccCCcceeEEEEEEEEEEcCHHHHHHHHhCCCCCCCHHHHHHHHHHHHhhhhhhhCccCCCCcc
Confidence 46999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ceEEEEEEEcCCCceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCceEEeeEEEEEeeCCccccceec
Q 026912 154 THVRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKDIQITDVRLDRKTGGKSGDWCRE 230 (231)
Q Consensus 154 t~v~V~~~~~~~~~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~m~I~~IrL~~K~GGKSg~~~~~ 230 (231)
++|+|+|+++++ .+|+|+|+|+++||||||||||||||+||||||||||++||+|+|++|||++|+|||||+|.|.
T Consensus 82 t~Vdv~~~~~~~-~~v~i~~~vkt~gkTGVEMEALtavsvalLTIyDM~Ka~eKd~~I~~vrl~eK~ggksg~~~~~ 157 (157)
T COG0315 82 TKVDVDFEVDED-DGVEITATVKTTGKTGVEMEALTAVSVALLTIYDMCKAVEKDMVIEGVRLLEKSGGKSGDFKRE 157 (157)
T ss_pred cceEEEEEECCC-CcEEEEEEEEECCCCCccHHHHHHHHHHHHHHHHHHHHhcCCcEEeeeEEEEecCCcCCcEecC
Confidence 999999999876 6899999999999999999999999999999999999999999999999999999999999874
No 4
>TIGR00581 moaC molybdenum cofactor biosynthesis protein MoaC. MoaC catalyzes an early step in molybdenum cofactor biosynthesis in E. coli. The Arabidopsis homolog Cnx3 complements MoaC deficiency in E. coli (MUID:95197640). Eukarotic members of this family branch within the bacterial branch, with the archaeal members as an apparent outgroup. This protein is absent in a number of the pathogens with smaller genomes, including Mycoplasmas, Chlamydias, and spirochetes, but is found in most other complete genomes to date. The homolog form Synechocystis sp. is fused to a MobA-homologous region and is an outlier to all other bacterial forms by both neighbor-joining and UPGMA analyses. Members of this family are well-conserved. The seed for this model excludes both archaeal sequences and the most divergent bacterial sequences, but still finds all candidate MoaC sequences easily between trusted and noise cutoffs. We suggest that sequences branching outside the set that contains all seed members
Probab=100.00 E-value=1.3e-72 Score=469.55 Aligned_cols=147 Identities=49% Similarity=0.738 Sum_probs=144.7
Q ss_pred CCccCCCCCeeeecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCcce
Q 026912 76 LTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITLTH 155 (231)
Q Consensus 76 ltH~d~~G~~~MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipLt~ 155 (231)
|||+|++|+++|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++|||||||||||||+||||||||||++
T Consensus 1 ltH~~~~g~~~MVDVs~K~~t~R~A~A~g~I~l~~~~~~~i~~~~~~KGdvl~~AriAgi~aaK~T~~lIPlCHpi~l~~ 80 (147)
T TIGR00581 1 LTHINEQGAARMVDISAKAETVREARASGFVRMKPETVKMISEGRVPKGDVIATARIAGIMAAKRTGDLIPLCHPLPLSK 80 (147)
T ss_pred CCcCCCCCCEEEEECCCCCCceeEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhhhcCCCCCccceE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEEcCCCceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCceEEeeEEEEEeeCCcc
Q 026912 156 VRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKDIQITDVRLDRKTGGKS 224 (231)
Q Consensus 156 v~V~~~~~~~~~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~m~I~~IrL~~K~GGKS 224 (231)
|+|+|++++ ++|.|+|+|++.++|||||||||||++||||||||||++||+|+|++|||++|+||||
T Consensus 81 v~v~~~~~~--~~i~v~~~v~t~~~TGVEMEALtavsva~LTiyDM~Kavdk~m~I~~i~l~~K~gGks 147 (147)
T TIGR00581 81 VEVELTVRE--DRVEIRATVRTTGRTGVEMEALTAVSVAALTVYDMCKAVDKDMVIGPVRLLEKSGGKS 147 (147)
T ss_pred EEEEEEEcC--CEEEEEEEEEEecCCCcHHHHHHHHHHHHHHHHHHHHhhCCCcEEeeeEEEEeeCCCC
Confidence 999999975 4899999999999999999999999999999999999999999999999999999997
No 5
>PRK14499 molybdenum cofactor biosynthesis protein MoaC/MOSC-domain-containing protein; Provisional
Probab=100.00 E-value=2.2e-70 Score=499.55 Aligned_cols=156 Identities=50% Similarity=0.704 Sum_probs=153.5
Q ss_pred CCCccCCCCCeeeecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCcc
Q 026912 75 GLTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITLT 154 (231)
Q Consensus 75 ~ltH~d~~G~~~MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipLt 154 (231)
.|||+|++|+++|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++|||||||||||||+||||||||||+
T Consensus 2 ~~th~~~~g~~~mvdv~~K~~t~R~A~A~g~i~~~~~~~~~i~~~~~~KGdvl~~a~~agi~aaK~t~~liPlchp~~i~ 81 (308)
T PRK14499 2 EFTHFNKDGLPQMVDVSSKEPTFRVAVASGRIYVGKEVIEAIEERLLPKGDVFSVAKIAAIMAAKKTSELIPLCHNIFLS 81 (308)
T ss_pred CCCcCCCCCCEEEEECCCCCCceeEEEEEEEEEeCHHHHHHHHhCCCCCccHHHHHHHHHHHHhhhcccccccCCCcccc
Confidence 59999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eEEEEEEEcCCCceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCceEEeeEEEEEeeCCccccceec
Q 026912 155 HVRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKDIQITDVRLDRKTGGKSGDWCRE 230 (231)
Q Consensus 155 ~v~V~~~~~~~~~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~m~I~~IrL~~K~GGKSg~~~~~ 230 (231)
+|+|+|+++++...|+|+|+|+|+++|||||||||||++||||||||||++||+|+|++|+|++|+|||||+|.|.
T Consensus 82 ~v~v~~~~~~~~~~v~~~~~v~~~~~tGvEmEAlt~~~~a~ltiyDm~K~~~~~~~i~~i~l~~k~ggksg~~~~~ 157 (308)
T PRK14499 82 GVDVSYEINREEGYIEAVSEVKTEAKTGAEMEAITAVSIFLETIYDMCKAVKKDMVITDVRLIEKSGGKSGHYIFE 157 (308)
T ss_pred eeEEEEEECCCCCeEEEEEEEEEcCCCcHHHHHHHHHHHHHHHHHHHHhhcCCCCEEeeEEEEEecCCcCCCcccc
Confidence 9999999998878999999999999999999999999999999999999999999999999999999999999875
No 6
>cd01420 MoaC_PE MoaC family, prokaryotic and eukaryotic. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=100.00 E-value=6.2e-70 Score=450.44 Aligned_cols=140 Identities=55% Similarity=0.809 Sum_probs=138.3
Q ss_pred eecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCcceEEEEEEEcCCC
Q 026912 87 MVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITLTHVRVDLMLNSKD 166 (231)
Q Consensus 87 MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipLt~v~V~~~~~~~~ 166 (231)
|||||+|++|.|+|+|+|+|+|+|+++++|++|.++|||||++||+||||||||||+||||||||||++|+|+|+++++.
T Consensus 1 MVDVs~K~~t~R~A~A~g~i~l~~~~~~~i~~~~~~KGdvl~vAriAgI~aaK~T~~LIPlCHpi~l~~v~v~~~~~~~~ 80 (140)
T cd01420 1 MVDVSDKAVTERTAVAEGRVRMSPETLDLITEGQLPKGDVLAVARIAGIMAAKRTSELIPLCHPLPLTGVDVDFELDEET 80 (140)
T ss_pred CcccCCCCCceeEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhcccccCCCCcccEEEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCceEEeeEEEEEeeCCcccc
Q 026912 167 FSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKDIQITDVRLDRKTGGKSGD 226 (231)
Q Consensus 167 ~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~m~I~~IrL~~K~GGKSg~ 226 (231)
.+|.|+|+|+|.++|||||||||||++||||||||||++||+|+|++|||++|+|||||+
T Consensus 81 ~~i~i~~~v~~~~kTGVEMEALtavsva~LTiyDM~Kavdk~m~I~~i~L~~K~GGksg~ 140 (140)
T cd01420 81 SGVRIEATVRTTGRTGVEMEALTAVSVAALTIYDMCKAVDKGMVIGGIRLLEKSGGKSGD 140 (140)
T ss_pred CEEEEEEEEEEccCCchHHHHHHHHHHHHHHHHHHHhhcCCCCEEeeEEEEEecCCCCCC
Confidence 899999999999999999999999999999999999999999999999999999999995
No 7
>PRK14500 putative bifunctional molybdopterin-guanine dinucleotide biosynthesis protein MoaC/MobA; Provisional
Probab=100.00 E-value=1.4e-68 Score=492.03 Aligned_cols=154 Identities=38% Similarity=0.534 Sum_probs=149.3
Q ss_pred CCCccCCCCCeeeecCCCCCCceeEEEEEEEEEeCHHHHHHHHcC--CCCCcCHHHHHHHHHHhhhhhcCCcccccccCC
Q 026912 75 GLTHIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLAN--QLAKGDVLSVAKIAGISGAKHTSSLIPLCHNIT 152 (231)
Q Consensus 75 ~ltH~d~~G~~~MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~--~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpip 152 (231)
.|||+|++|+++|||||+|+.|.|+|+|+|+|+|+++++++|+++ .++|||||+|||||||||||||++|||||||||
T Consensus 1 ~~~h~~~~~~~~mvdv~~k~~t~r~a~a~~~i~~~~~~~~~~~~~~~~~~kg~v~~~a~~agi~a~k~t~~liplch~~~ 80 (346)
T PRK14500 1 MFTHLNENQQPRMVDISQKVVSDRRAVAQAIVQLPPAIKDYVTGQDIFLKKGPVIQTAIIAGTMAVKRTADLIPFCHTLP 80 (346)
T ss_pred CCCcCCCCCCeEEEECCCCCCcceEEEEEEEEEECHHHHHHHHcCCCCCCCccHHHHHHHHHHHHHhhhhhhccccCccc
Confidence 389999999999999999999999999999999999999999999 579999999999999999999999999999999
Q ss_pred cceEEEEEEEcCCCc--eEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCceEEeeEEEEEeeCCccccce
Q 026912 153 LTHVRVDLMLNSKDF--SVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKDIQITDVRLDRKTGGKSGDWC 228 (231)
Q Consensus 153 Lt~v~V~~~~~~~~~--~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~m~I~~IrL~~K~GGKSg~~~ 228 (231)
|++|+|+|+++++.. .|+|+|+|+|+++||||||||||||+||||||||||++||+|+|++|||++|+|||||+|.
T Consensus 81 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tgvemealt~~~~a~ltiydm~k~~~~~~~i~~~~l~~k~gg~s~~~~ 158 (346)
T PRK14500 81 IHGCKFDINIVYQKRDLEIFLQCAVKTNYKTGVEMEALCGVAVAALTIYDMCKSISPHIIIKETRLIEKSGGKADLSQ 158 (346)
T ss_pred cceeEEEEEECCccCcceEEEEEEEEECCCCcHHHHHHHHHHHHHHHHHHHHhccCCCcEEeeEEEEEecCCcCCCCC
Confidence 999999999987654 6999999999999999999999999999999999999999999999999999999999995
No 8
>PRK03604 moaC bifunctional molybdenum cofactor biosynthesis protein MoaC/MogA; Provisional
Probab=100.00 E-value=3.6e-68 Score=485.43 Aligned_cols=152 Identities=48% Similarity=0.691 Sum_probs=148.8
Q ss_pred CccCCCCCeeeecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCcceE
Q 026912 77 THIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITLTHV 156 (231)
Q Consensus 77 tH~d~~G~~~MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipLt~v 156 (231)
||+|++|+++|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++||||||||||||++||||||||||++|
T Consensus 1 ~h~~~~g~~~mvdv~~k~~t~r~A~a~~~i~~~~~~~~~i~~~~~~kg~vl~~a~~agi~aaK~t~~liPlchp~~l~~~ 80 (312)
T PRK03604 1 THLDEEGRVRMVDVSGKPGTLRTARASGIIVTSPETIELLRQGDLPKGDVLTTAKIAGIQAAKRTSELIPLCHPLPLSWV 80 (312)
T ss_pred CccCCCCCEEEEECCCCCCceeEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcccccccCCCCCCceE
Confidence 79999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEEcCCCceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCceEEeeEEEEEeeCCccccceec
Q 026912 157 RVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKDIQITDVRLDRKTGGKSGDWCRE 230 (231)
Q Consensus 157 ~V~~~~~~~~~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~m~I~~IrL~~K~GGKSg~~~~~ 230 (231)
+|+|+++++ +|+|+|+|+|+++|||||||||||++||||||||||++||+|+|++|||++|+|||||+|.+.
T Consensus 81 ~v~~~~~~~--~~~~~~~v~~~~~tgvemeAlt~~~~a~ltiydm~k~~~~~~~i~~~~l~~k~ggksg~~~~~ 152 (312)
T PRK03604 81 DVEFEIEDD--RIRIEATVKTIGKTGVEMEALTAVSVAALTIYDMLKPVDKALEIGGIRLLEKTGGKSGHKRRF 152 (312)
T ss_pred EEEEEEcCC--eEEEEEEEEEecCCcHHHHHHHHHHHHHHHHHHHHHhcCCCCEEEeEEEEEeeCCCCCccccc
Confidence 999999764 899999999999999999999999999999999999999999999999999999999999863
No 9
>PRK12343 putative molybdenum cofactor biosynthesis protein MoaC; Reviewed
Probab=100.00 E-value=5.5e-68 Score=443.20 Aligned_cols=143 Identities=40% Similarity=0.605 Sum_probs=140.3
Q ss_pred ccCCCCCeeeecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCcceEE
Q 026912 78 HIGRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITLTHVR 157 (231)
Q Consensus 78 H~d~~G~~~MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipLt~v~ 157 (231)
|+|++| ++|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++||+|||||||||++||||||||||++|+
T Consensus 1 H~d~~g-~~MVDVs~K~~t~R~A~A~g~i~~~~~~~~~i~~~~~~KGdvl~~AriAgi~aAK~T~~LIPlCHPl~l~~v~ 79 (151)
T PRK12343 1 HVDEDG-VKMVDVSEKEDVLRIAVAEGFIKLKPETIEAIREGEVEKGNVLATARVAGILAVKKTPELIPMCHPIPITGVD 79 (151)
T ss_pred CCCCCC-CEEEEcCCCCCceEEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhhhccCCCCccceEEE
Confidence 999999 9999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred EEEEEcCCCceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCc-------eEEeeEEEEEeeCCc
Q 026912 158 VDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKD-------IQITDVRLDRKTGGK 223 (231)
Q Consensus 158 V~~~~~~~~~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~-------m~I~~IrL~~K~GGK 223 (231)
|+|+++++ +|+|+|+|+|.++|||||||||||++||||||||||++||+ |+|++|||++|+||.
T Consensus 80 v~~~~~~~--~v~v~~~v~~~~~TGVEMEALtavsvA~LTiYDM~Kavdk~~~gqyp~~~I~~i~L~~K~g~~ 150 (151)
T PRK12343 80 VDFEVGED--GIEARVTVKTTYKTGVEMEALTGVSVALLTIWDMVKAAEKDEDGQYPETRIENIRVVEKIKEE 150 (151)
T ss_pred EEEEEcCC--EEEEEEEEEEcCCCChhHHHHHHHHHHHHHHHHHHHHhcccccCCCCceEEEEEEEEEeeCCC
Confidence 99999754 79999999999999999999999999999999999999998 999999999999985
No 10
>cd00528 MoaC MoaC family. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=100.00 E-value=1.3e-67 Score=434.80 Aligned_cols=136 Identities=55% Similarity=0.803 Sum_probs=134.5
Q ss_pred eecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCcceEEEEEEEcCCC
Q 026912 87 MVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITLTHVRVDLMLNSKD 166 (231)
Q Consensus 87 MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipLt~v~V~~~~~~~~ 166 (231)
|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++||+||||||||||+||||||||||++|+|+|+++++.
T Consensus 1 MVDVs~K~~t~R~A~A~g~i~l~~~~~~~i~~~~~~KGdvl~~AriAgI~aaK~T~~LIPlCHpl~l~~v~v~~~~~~~~ 80 (136)
T cd00528 1 MVDVSDKAVTERTAVAEGRVRLSPETLDLIREGQLPKGDVLAVARIAGIMAAKRTSELIPLCHPLPLTGVDVDFELDEDT 80 (136)
T ss_pred CcccCCCCCceeEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcccccccCCCCcceEEEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred ceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCceEEeeEEEEEeeCC
Q 026912 167 FSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKDIQITDVRLDRKTGG 222 (231)
Q Consensus 167 ~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~m~I~~IrL~~K~GG 222 (231)
.+|.|+|+|+|.++||||||||||||+||||||||||++||+|+|++|||++|+||
T Consensus 81 ~~i~i~~~v~~~~~TGVEMEALtavsvA~LTiyDM~Kavdk~m~I~~i~L~~K~GG 136 (136)
T cd00528 81 SGVRIRATVRTTGKTGVEMEALTAVSVAALTIYDMCKAVDKDMVIENIRLLEKSGG 136 (136)
T ss_pred CEEEEEEEEEEecCCCcHHHHHHHHHHHHHHHHHHHhhcCCCCEEeeEEEEEecCC
Confidence 78999999999999999999999999999999999999999999999999999998
No 11
>PF01967 MoaC: MoaC family; InterPro: IPR002820 The majority of molybdenum-containing enzymes utilise a molybdenum cofactor (MoCF or Moco) consisting of a Mo atom coordinated via a cis-dithiolene moiety to molybdopterin (MPT). MoCF is ubiquitous in nature, and the pathway for MoCF biosynthesis is conserved in all three domains of life. MoCF-containing enzymes function as oxidoreductases in carbon, nitrogen, and sulphur metabolism [, ]. In Escherichia coli, biosynthesis of MoCF is a three stage process. It begins with the MoaA and MoaC conversion of GTP to the meta-stable pterin intermediate precursor Z. The second stage involves MPT synthase (MoaD and MoaE), which converts precursor Z to MPT; MoeB is involved in the recycling of MPT synthase. The final step in MoCF synthesis is the attachment of mononuclear Mo to MPT, a process that requires MoeA and which is enhanced by MogA in an Mg2 ATP-dependent manner []. MoCF is the active co-factor in eukaryotic and some prokaryotic molybdo-enzymes, but the majority of bacterial enzymes requiring MoCF, need a modification of MTP for it to be active; MobA is involved in the attachment of a nucleotide monophosphate to MPT resulting in the MGD co-factor, the active co-factor for most prokaryotic molybdo-enzymes. Bacterial two-hybrid studies have revealed the close interactions between MoeA, MogA, and MobA in the synthesis of MoCF []. Moreover the close functional association of MoeA and MogA in the synthesis of MoCF is supported by fact that the known eukaryotic homologues to MoeA and MogA exist as fusion proteins: CNX1 (Q39054 from SWISSPROT) of Arabidopsis thaliana (Mouse-ear cress), mammalian Gephryin (e.g. Q9NQX3 from SWISSPROT) and Drosophila melanogaster (Fruit fly) Cinnamon (P39205 from SWISSPROT) []. This entry contains the molybdenum cofactor biosynthesis protein MoaC.; GO: 0006777 Mo-molybdopterin cofactor biosynthetic process; PDB: 2EKN_B 1EKS_A 1EKR_A 3JQM_D 2IIH_A 3JQJ_I 2IDE_K 3JQK_A 2OHD_B 2EEY_A.
Probab=100.00 E-value=1e-67 Score=435.40 Aligned_cols=136 Identities=56% Similarity=0.830 Sum_probs=119.9
Q ss_pred eecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCcceEEEEEEEcCCC
Q 026912 87 MVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITLTHVRVDLMLNSKD 166 (231)
Q Consensus 87 MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipLt~v~V~~~~~~~~ 166 (231)
|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++|||||||||||||+||||||||||++|+|+|+++++.
T Consensus 1 MVDVs~K~~t~R~A~A~g~i~l~~~~~~~i~~~~~~KGdvl~vAriAgI~aaKkT~~LIPlCHpi~l~~v~v~~~~~~~~ 80 (136)
T PF01967_consen 1 MVDVSDKPVTYRTAIASGRIRLSPETIELIRDGEVPKGDVLAVARIAGIMAAKKTSELIPLCHPIPLTHVDVDFELDEDE 80 (136)
T ss_dssp E---TTS--EEEEEEEEEEEEE-HHHHHHHHTTSSTTC-HHHHHHHHHHHHHHHHHHHSTT-----EEEEEEEEEEETTE
T ss_pred CccCCCCCCeeEEEEEEEEEEECHHHHHHHHhCCCCCCCHHHhHHHHHHHHhhhhhhhccccccccccEEEEEEEEcCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999888
Q ss_pred ceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCceEEeeEEEEEeeCC
Q 026912 167 FSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKDIQITDVRLDRKTGG 222 (231)
Q Consensus 167 ~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~m~I~~IrL~~K~GG 222 (231)
.+|+|+|+|+|.++||||||||||||+||||||||||++||+|+|++|||++|+||
T Consensus 81 ~~v~v~~~v~t~~kTGVEMEALtavsvA~LTiyDM~Kavdk~~~I~~i~l~~K~GG 136 (136)
T PF01967_consen 81 SSVEVRATVKTTGKTGVEMEALTAVSVAALTIYDMCKAVDKDMVITDIRLLEKSGG 136 (136)
T ss_dssp TEEEEEEEEEEEESS--HHHHHHHHHHHHHHHHHHHCCCHST-EEEEEEEEEEESS
T ss_pred cEEEEEEEEEEecCCCccHHHHHHHHHHHHHHHHHHhccCCCCEEeeEEEEEeeCC
Confidence 89999999999999999999999999999999999999999999999999999998
No 12
>cd01419 MoaC_A MoaC family, archaeal. Members of this family are involved in molybdenum cofactor (Moco) biosynthesis, an essential cofactor of a diverse group of redox enzymes. MoaC, a small hexameric protein, converts, together with MoaA, a guanosine derivative to the precursor Z by inserting the carbon-8 of the purine between the 2' and 3' ribose carbon atoms, which is the first of three phases of Moco biosynthesis.
Probab=100.00 E-value=1.5e-65 Score=424.61 Aligned_cols=134 Identities=41% Similarity=0.632 Sum_probs=131.7
Q ss_pred eecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCcceEEEEEEEcCCC
Q 026912 87 MVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITLTHVRVDLMLNSKD 166 (231)
Q Consensus 87 MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipLt~v~V~~~~~~~~ 166 (231)
|||||+|++|.|+|+|+|+|+|+++++++|++|.++|||||++|||||||||||||+||||||||||++|+|+|+++++
T Consensus 1 MVDVs~K~~T~R~A~A~g~I~~~~~t~~~i~~~~~~KGdvL~vAriAgI~aaK~T~~LIPlCHpl~l~~v~v~~~~~~~- 79 (141)
T cd01419 1 MVDISSKEDVAREAVASGFIKLKEETIKAIREGKVEKGNVIATARIAGILAVKKTPELIPMCHPIPITGVDVDFEVEED- 79 (141)
T ss_pred CcccCCCCCceEEEEEEEEEEECHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhhhhhccCCCCccceEEEEEEEEcCC-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999754
Q ss_pred ceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCc-------eEEeeEEEEEeeCC
Q 026912 167 FSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKD-------IQITDVRLDRKTGG 222 (231)
Q Consensus 167 ~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~-------m~I~~IrL~~K~GG 222 (231)
+|.|+|+|+|.++|||||||||||++||||||||||++||+ |+|++|+|++|+||
T Consensus 80 -~i~i~~~v~t~~~TGVEMEALtavsva~LTiYDM~Kavdk~e~g~yp~~~I~~i~l~~K~~g 141 (141)
T cd01419 80 -GIEVRCTVKTTYKTGVEMEALTGVSVALLTIWDMVKSAEKDEDGQYPETRIENVRVVEKIKG 141 (141)
T ss_pred -EEEEEEEEEEcCCCChhHHHHHHHHHHHHHHHHHHHHhcccccCCCCceEEEEEEEEEeeCC
Confidence 79999999999999999999999999999999999999998 99999999999998
No 13
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=99.83 E-value=1.4e-23 Score=190.88 Aligned_cols=195 Identities=18% Similarity=0.029 Sum_probs=163.0
Q ss_pred hHHHHHHHHhHhhhcCCCCCCCCCCC----------CC---Cchhhh----hhhhcccCCCC----------CCCCCCcc
Q 026912 27 SAIVDLNKEMESIFGEPPTSNGFSGS----------VS---NDFMAQ----EAQLTSQKICD----------STPGLTHI 79 (231)
Q Consensus 27 ~~i~e~n~emes~Fge~p~~~g~~~~----------~~---n~~~~~----e~~~s~~~~~~----------~~~~ltH~ 79 (231)
..+.+||++|.++| ..|++++.+.+ .+ ++++.+ +..+|+.+... ...+.+|.
T Consensus 60 v~knrLtggeptIr-~di~~i~~g~~~l~gLks~~ITtng~vl~R~lp~lhkaglssiNiSldtl~~aKfa~~~rr~g~v 138 (323)
T KOG2876|consen 60 VDKNRLTGGEPLIR-QDIVPIVAGLSSLPGLKSIGITTNGLVLARLLPQLHKAGLSSINISLDTLVRAKFAKLTRRKGFV 138 (323)
T ss_pred hhhhhhcCCCCccc-ccccchhhhhhcccchhhhceeccchhhhhhhhHHHhhcccchhhhhhhhhHHHHHHHhhhccHH
Confidence 78899999999999 66665665544 11 122222 33334333221 23346666
Q ss_pred CCCCCeeeecCCCCCCceeEEEEEEEEEeCHHHHHHHHcCCCCCcCHHHHHHHHHHhhhhhcCCcccccccCCcceEEEE
Q 026912 80 GRTGEAQMVDVSLKENSQRTAIANCKVILGKKVFDLVLANQLAKGDVLSVAKIAGISGAKHTSSLIPLCHNITLTHVRVD 159 (231)
Q Consensus 80 d~~G~~~MVDVs~K~~t~R~A~A~g~I~l~~~t~~~I~~~~~~KGdVL~vAriAgI~aAK~T~~LIPLCHpipLt~v~V~ 159 (231)
.=-+..+|+|++.+.+ .|++.+..+.....++++.+..++..|+||+.++.++++.++|+|+.|||+||.|.|.+
T Consensus 139 ~V~~~iq~a~~lgy~p-vkvn~v~~k~~n~~ev~Dfv~~tr~~p~DVrfIe~mpf~gn~~~t~~lIpy~e~l~l~~---- 213 (323)
T KOG2876|consen 139 KVWASIQLAIELGYNP-VKVNCVVMKGLNEDEVFDFVLLTRMRPLDVRFIEFMPFDGNKWNTKSLIPYKEMLDLIV---- 213 (323)
T ss_pred HHHHHHhHHhhhCCCC-cceeeEEEeccCCCcccceeeecCCCCcceEEEEecccCCCcccccccccHHHHHHHHh----
Confidence 5567789999999999 99999999999999999999999999999999999999999999999999999999887
Q ss_pred EEEcCCCceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhhhhccCCceEEeeEEEEEeeCCccccceec
Q 026912 160 LMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDMCKAASKDIQITDVRLDRKTGGKSGDWCRE 230 (231)
Q Consensus 160 ~~~~~~~~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM~Kavdk~m~I~~IrL~~K~GGKSg~~~~~ 230 (231)
...+..+.+.-+..+++|||++||+.++||++-++.|||||+..|...+.|.+|..+.+|+|+.|.|.
T Consensus 214 ---~~~d~~~~l~~e~s~T~Ka~~i~g~~gqvsfitsm~~hfC~tcnrlr~~aDgnlkvcl~G~Se~slRd 281 (323)
T KOG2876|consen 214 ---KPWDFSVRLPDEPSDTAKAYKIDGFQGQVSFITSMSEHFCGTCNRLRITADGNLKVCLFGNSEVSLRD 281 (323)
T ss_pred ---ccCchhhcCCCCCCccccccccccccceEEeehhhHHHHHhhhhhheEeccCcEEEeecCCccchhhh
Confidence 33445677888899999999999999999999999999999999999999999999999999999874
No 14
>KOG2876 consensus Molybdenum cofactor biosynthesis pathway protein [Coenzyme transport and metabolism]
Probab=72.32 E-value=0.6 Score=43.96 Aligned_cols=149 Identities=17% Similarity=0.177 Sum_probs=96.5
Q ss_pred CCCccCCCCCeeeecCCCCCCceeE--EEEEEEEEeCHHHHHHHHcCCCCCcCHHH----------HHHHHHHhhhhhcC
Q 026912 75 GLTHIGRTGEAQMVDVSLKENSQRT--AIANCKVILGKKVFDLVLANQLAKGDVLS----------VAKIAGISGAKHTS 142 (231)
Q Consensus 75 ~ltH~d~~G~~~MVDVs~K~~t~R~--A~A~g~I~l~~~t~~~I~~~~~~KGdVL~----------vAriAgI~aAK~T~ 142 (231)
-.+|.|=.++--|++.+-...-.|. |+++--.....=..+.+..+++.+|+.+- +++++|+-.+|-|.
T Consensus 17 lte~cnlrc~ycMpsegv~l~pk~~~lav~eilrl~~~F~~qgv~knrLtggeptIr~di~~i~~g~~~l~gLks~~ITt 96 (323)
T KOG2876|consen 17 LTEKCNLRCQYCMPSEGVPLKPKRKLLAVSEILRLAGLFAPQGVDKNRLTGGEPLIRQDIVPIVAGLSSLPGLKSIGITT 96 (323)
T ss_pred hhhccccccceechhcCCcCccchhhcchhhhHHhhhhhhHhhhhhhhhcCCCCcccccccchhhhhhcccchhhhceec
Confidence 4678888899999999984444444 44433333334444566777888887665 99999999999999
Q ss_pred ------CcccccccCCcceEEEEEEEcCCCceEEEEEEEEEcCCCCchhHHHHHHHHHHHHHHhh-------hhccCCc-
Q 026912 143 ------SLIPLCHNITLTHVRVDLMLNSKDFSVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVYDM-------CKAASKD- 208 (231)
Q Consensus 143 ------~LIPLCHpipLt~v~V~~~~~~~~~~v~i~~~v~t~~kTGVEMEALtavsvA~LTIYDM-------~Kavdk~- 208 (231)
.++|.||---|+++.+.++... +-++..-.+..+-- +.+-++-.|-..=||= ||.+-.+
T Consensus 97 ng~vl~R~lp~lhkaglssiNiSldtl~---~aKfa~~~rr~g~v----~V~~~iq~a~~lgy~pvkvn~v~~k~~n~~e 169 (323)
T KOG2876|consen 97 NGLVLARLLPQLHKAGLSSINISLDTLV---RAKFAKLTRRKGFV----KVWASIQLAIELGYNPVKVNCVVMKGLNEDE 169 (323)
T ss_pred cchhhhhhhhHHHhhcccchhhhhhhhh---HHHHHHHhhhccHH----HHHHHHhHHhhhCCCCcceeeEEEeccCCCc
Confidence 9999999999999998877321 11111112222222 2233334444444666 6655433
Q ss_pred ---------eEEeeEEEEEeeCCccccceec
Q 026912 209 ---------IQITDVRLDRKTGGKSGDWCRE 230 (231)
Q Consensus 209 ---------m~I~~IrL~~K~GGKSg~~~~~ 230 (231)
|.=.|||-+++--+-.+.|...
T Consensus 170 v~Dfv~~tr~~p~DVrfIe~mpf~gn~~~t~ 200 (323)
T KOG2876|consen 170 VFDFVLLTRMRPLDVRFIEFMPFDGNKWNTK 200 (323)
T ss_pred ccceeeecCCCCcceEEEEecccCCCccccc
Confidence 3446888899988888888754
No 15
>PF09241 Herp-Cyclin: Herpesviridae viral cyclin; InterPro: IPR015322 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs). Cyclins, together with the p34 (cdc2) or cdk2 kinases, form the Maturation Promoting Factor (MPF). There are two main groups of cyclins, G1/S cyclins, which are essential for the control of the cell cycle at the G1/S (start) transition, and G2/M cyclins, which are essential for the control of the cell cycle at the G2/M (mitosis) transition. G2/M cyclins accumulate steadily during G2 and are abruptly destroyed as cells exit from mitosis (at the end of the M-phase). In most species, there are multiple forms of G1 and G2 cyclins. For example, in vertebrates, there are two G2 cyclins, A and B, and at least three G1 cyclins, C, D, and E. Cyclin homologues have been found in various viruses, including Saimiriine herpesvirus 2 (Herpesvirus saimiri) and Human herpesvirus 8 (HHV-8) (Kaposi's sarcoma-associated herpesvirus). These viral homologues differ from their cellular counterparts in that the viral proteins have gained new functions and eliminated others to harness the cell and benefit the virus []. This entry represents a domain found in a family of viral cyclins that specifically activate CDK6 of host cells to a very high degree []. This domain adopts a helical structure consisting of five alpha-helices, with one helix surrounded by the others.; PDB: 1XO2_A 1JOW_A 2F2C_A 2EUF_A 1BU2_A.
Probab=43.84 E-value=4.3 Score=32.44 Aligned_cols=16 Identities=38% Similarity=0.798 Sum_probs=11.2
Q ss_pred hhhcCCcccccccCCc
Q 026912 138 AKHTSSLIPLCHNITL 153 (231)
Q Consensus 138 AK~T~~LIPLCHpipL 153 (231)
+-.|..|||+||.+.|
T Consensus 2 vl~tdflip~c~alki 17 (106)
T PF09241_consen 2 VLSTDFLIPVCHALKI 17 (106)
T ss_dssp --GGGGHHHHHHHTT-
T ss_pred cchhhhHHHhhhhccC
Confidence 3457889999998765
No 16
>TIGR00589 ogt O-6-methylguanine DNA methyltransferase. All proteins in this family for which functions are known are involved alkyl-DNA transferases which remove alkyl groups from DNA as part of alkylation DNA repair. Some of the proteins in this family are also transcription regulators and have a distinct transcription regulatory domain. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=43.05 E-value=20 Score=27.22 Aligned_cols=27 Identities=19% Similarity=0.358 Sum_probs=19.8
Q ss_pred CHHHHHHHHcCCCCCcCHHHHHHHHHHhh
Q 026912 109 GKKVFDLVLANQLAKGDVLSVAKIAGISG 137 (231)
Q Consensus 109 ~~~t~~~I~~~~~~KGdVL~vAriAgI~a 137 (231)
..++++.++ ++|.|.|.+-.+||...+
T Consensus 4 ~~~V~~~l~--~IP~G~v~TYg~iA~~~g 30 (80)
T TIGR00589 4 QQRVWQALR--TIPYGETKSYGQLAARIG 30 (80)
T ss_pred HHHHHHHHh--CCCCCCcCCHHHHHHHhC
Confidence 346778887 499999998777766554
No 17
>PF15391 DUF4614: Domain of unknown function (DUF4614)
Probab=37.55 E-value=18 Score=31.95 Aligned_cols=20 Identities=45% Similarity=0.494 Sum_probs=18.7
Q ss_pred hhHHHHHHHHHHHHHHhhhh
Q 026912 184 EMEAMTAVTVAGLTVYDMCK 203 (231)
Q Consensus 184 EMEALtavsvA~LTIYDM~K 203 (231)
-+|||||=+=|+|.+=||+|
T Consensus 115 AiEALTaYSPA~lALnDMLk 134 (181)
T PF15391_consen 115 AIEALTAYSPAVLALNDMLK 134 (181)
T ss_pred HHHHHhccChHHHHHHHHHH
Confidence 47899999999999999999
No 18
>PF12374 Dmrt1: Double-sex mab3 related transcription factor 1; InterPro: IPR022114 This domain family is found in eukaryotes, and is typically between 61 and 73 amino acids in length. The family is found in association with PF00751 from PFAM. This family is a transcription factor involved in sex determination. The proteins in this family contain a zinc finger-like DNA-binding motif, DM domain.
Probab=36.12 E-value=14 Score=27.96 Aligned_cols=17 Identities=24% Similarity=0.422 Sum_probs=13.9
Q ss_pred cccccCCcceEEEEEEE
Q 026912 146 PLCHNITLTHVRVDLML 162 (231)
Q Consensus 146 PLCHpipLt~v~V~~~~ 162 (231)
-+|||+||.+-++-++=
T Consensus 3 Gi~~pv~ls~~e~~VKn 19 (71)
T PF12374_consen 3 GICHPVPLSGPEVMVKN 19 (71)
T ss_pred cccccccCCCccccccc
Confidence 46999999988877763
No 19
>PRK09444 pntB pyridine nucleotide transhydrogenase; Provisional
Probab=33.91 E-value=23 Score=35.33 Aligned_cols=22 Identities=36% Similarity=0.548 Sum_probs=19.1
Q ss_pred HHHHHHHHHHHHHhhhhccCCce
Q 026912 187 AMTAVTVAGLTVYDMCKAASKDI 209 (231)
Q Consensus 187 ALtavsvA~LTIYDM~Kavdk~m 209 (231)
||-|.|-+.|| |.||||..|+.
T Consensus 246 alVGaSG~ILt-~iMCkAMNRSl 267 (462)
T PRK09444 246 ALVGSSGAILS-YIMCKAMNRSF 267 (462)
T ss_pred hhHhhhHHHHH-HHHHHHhCccH
Confidence 78899888887 99999999874
No 20
>PF03461 TRCF: TRCF domain; InterPro: IPR005118 This domain is found in proteins necessary for strand-specific repair in DNA such as TRCF in Escherichia coli. A lesion in the template strand blocks the RNA polymerase complex (RNAP). The RNAP-DNA-RNA complex is specifically recognised by the transcription-repair-coupling factor (TRCF) which releases RNAP and the truncated transcript.; GO: 0003684 damaged DNA binding, 0004386 helicase activity, 0005524 ATP binding, 0006281 DNA repair; PDB: 2QSR_A 2EYQ_A.
Probab=32.18 E-value=36 Score=26.45 Aligned_cols=19 Identities=32% Similarity=0.552 Sum_probs=14.9
Q ss_pred hHHHHHHHHhHhhhcCCCC
Q 026912 27 SAIVDLNKEMESIFGEPPT 45 (231)
Q Consensus 27 ~~i~e~n~emes~Fge~p~ 45 (231)
+.+.++-+||+-+||.+|.
T Consensus 33 ~el~~l~~El~DRFG~~P~ 51 (101)
T PF03461_consen 33 EELEDLREELIDRFGPLPE 51 (101)
T ss_dssp HHHHHHHHHHHHHH-S--H
T ss_pred HHHHHHHHHHHHHcCCCcH
Confidence 6899999999999999997
No 21
>PRK00901 methylated-DNA--protein-cysteine methyltransferase; Provisional
Probab=30.01 E-value=39 Score=28.63 Aligned_cols=29 Identities=28% Similarity=0.323 Sum_probs=21.5
Q ss_pred EeCHHHHHHHHcCCCCCcCHHHHHHHHHHhh
Q 026912 107 ILGKKVFDLVLANQLAKGDVLSVAKIAGISG 137 (231)
Q Consensus 107 ~l~~~t~~~I~~~~~~KGdVL~vAriAgI~a 137 (231)
-+...+++.|. ++|.|.+.+-.+||...+
T Consensus 73 ~fq~~Vw~~l~--~Ip~G~t~tY~~lA~~~g 101 (155)
T PRK00901 73 EFQKKVWKALQ--EIPYGETRSYKEIAVNIG 101 (155)
T ss_pred hHHHHHHHHHc--cCCCCCcCCHHHHHHHHC
Confidence 45667788886 899999998777766544
No 22
>PF01035 DNA_binding_1: 6-O-methylguanine DNA methyltransferase, DNA binding domain; InterPro: IPR014048 Synonym(s): 6-O-methylguanine-DNA methyltransferase, O-6-methylguanine-DNA-alkyltransferase This entry represents the DNA binding region of 6-O-methylguanine-DNA methyltransferases. The repair of DNA containing O6-alkylated guanine is carried out by DNA-[protein]-cysteine S-methyltransferase (2.1.1.63 from EC). The major mutagenic and carcinogenic effect of methylating agents in DNA is the formation of O6-alkylguanine. The alkyl group at the O-6 position is transferred to a cysteine residue in the enzyme []. This is a suicide reaction since the enzyme is irreversibly inactivated and the methylated protein accumulates as a dead-end product. Most, but not all of the methyltransferases are also able to repair O-4-methylthymine. DNA-[protein]-cysteine S-methyltransferases are widely distributed and are found in various prokaryotic and eukaryotic sources [].; GO: 0003824 catalytic activity, 0006281 DNA repair; PDB: 1SFE_A 1T39_B 1T38_A 1EH7_A 1EH6_A 1YFH_C 1EH8_A 1QNT_A 2KIM_A 2KIF_A ....
Probab=26.52 E-value=35 Score=25.82 Aligned_cols=38 Identities=29% Similarity=0.607 Sum_probs=22.2
Q ss_pred HHHHHHHHcCCCCCcCHHHHHHHHHHhh-----------hhh--cCCccccccc
Q 026912 110 KKVFDLVLANQLAKGDVLSVAKIAGISG-----------AKH--TSSLIPLCHN 150 (231)
Q Consensus 110 ~~t~~~I~~~~~~KGdVL~vAriAgI~a-----------AK~--T~~LIPLCHp 150 (231)
.++++.|++ +|.|.|.+-..||-..+ .++ .+.+|| ||-
T Consensus 5 ~~V~~~v~~--IP~G~v~TYg~iA~~~g~p~~ar~Vg~al~~np~~~~iP-~HR 55 (85)
T PF01035_consen 5 RRVWEAVRQ--IPYGKVTTYGEIARLLGRPKAARAVGSALARNPIPIIIP-CHR 55 (85)
T ss_dssp HHHHHHHTT--S-TT-BEEHHHHHHHTT-TTCHHHHHHHHHTSSCTTTSG-GGG
T ss_pred HHHHHHHHc--CCCCceEeHHHHHHHHhhcccHHHHHHHhccccccCCCC-eEE
Confidence 355666664 88888887666655444 223 456777 786
No 23
>PLN00210 40S ribosomal protein S16; Provisional
Probab=23.42 E-value=1.1e+02 Score=25.78 Aligned_cols=55 Identities=24% Similarity=0.374 Sum_probs=38.9
Q ss_pred eEEEEEEEEEcCCCCchhHHHHHHHHHHHHHH--------------hhhhccCCceEEeeEEEEE--eeCCc
Q 026912 168 SVDIEGEAVSSGKTGVEMEAMTAVTVAGLTVY--------------DMCKAASKDIQITDVRLDR--KTGGK 223 (231)
Q Consensus 168 ~v~i~~~v~t~~kTGVEMEALtavsvA~LTIY--------------DM~Kavdk~m~I~~IrL~~--K~GGK 223 (231)
.+.|.++|+.-|.+| .-+|+.-+-.=+|..| ++++++|.++.-.|-|..| |.|++
T Consensus 60 ~~Di~~~V~GGG~sg-Qa~Air~aiaraL~~~~~~~~~~~~r~~Lk~~l~~yd~glLtrD~R~~ERKK~G~~ 130 (141)
T PLN00210 60 GVDMRIRVKGGGHTS-QIYAIRQSIAKALVAYYQKYVDEQSKKEIKDILLRYDRTLLVADPRRCEPKKFGGR 130 (141)
T ss_pred ceeEEEEEEcCCHhH-HHHHHHHHHHHHHHHhcccccChhHHHHHHHHHHhccCCCccCCchhhccCcCCcc
Confidence 466788888888999 5677654444444444 3777789999899998876 55554
No 24
>COG0740 ClpP Protease subunit of ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones / Intracellular trafficking and secretion]
Probab=22.19 E-value=46 Score=29.77 Aligned_cols=21 Identities=24% Similarity=0.441 Sum_probs=17.0
Q ss_pred HHHHHHHHHHhhhhccCCceE
Q 026912 190 AVTVAGLTVYDMCKAASKDIQ 210 (231)
Q Consensus 190 avsvA~LTIYDM~Kavdk~m~ 210 (231)
|.-.|.++||||+|.+.++..
T Consensus 69 G~V~aG~AIydtm~~ik~~V~ 89 (200)
T COG0740 69 GSVTAGLAIYDTMQFIKPPVS 89 (200)
T ss_pred cccchhHHHHHHHHhcCCCeE
Confidence 344689999999999988754
No 25
>PRK00474 rps9p 30S ribosomal protein S9P; Reviewed
Probab=21.42 E-value=1.3e+02 Score=25.18 Aligned_cols=55 Identities=27% Similarity=0.329 Sum_probs=40.4
Q ss_pred eEEEEEEEEEcCCCCchhHHHH-HHHHHHHHH------HhhhhccCCceEEeeEEEEE--eeCCc
Q 026912 168 SVDIEGEAVSSGKTGVEMEAMT-AVTVAGLTV------YDMCKAASKDIQITDVRLDR--KTGGK 223 (231)
Q Consensus 168 ~v~i~~~v~t~~kTGVEMEALt-avsvA~LTI------YDM~Kavdk~m~I~~IrL~~--K~GGK 223 (231)
.+.|.++|+.-|.|| --+|+- |.+=||+.. -+++|++|+++.-.|-|..| |.|++
T Consensus 60 ~~di~i~V~GGG~sg-Qa~Air~aIaraL~~~~~~~~~r~~lk~~d~glLtrD~R~~ERKK~G~~ 123 (134)
T PRK00474 60 KVDIDVNVEGGGIMG-QADAARTAIARGLVEWTGDMELKDAFLAYDRTLLVGDPRRTEPKKWGGK 123 (134)
T ss_pred CccEEEEEEcCChhH-HHHHHHHHHHHHHHHhccCHHHHHHHHHhcCCCcccCchhhccCcCCCc
Confidence 466788888888999 667664 555666654 37788888898888888876 55554
No 26
>TIGR01352 tonB_Cterm TonB family C-terminal domain. This model represents the C-terminal of TonB and is homologs. TonB is an energy-transducer for TonB-dependent receptors of Gram-negative bacteria. Most members are designated as TonB or TonB-related proteins, but a few represent the paralogous TolA protein. Several bacteria have up to four TonB paralogs. In nearly every case, a proline-rich repetive region is found N-terminal to this domain; these low-complexity regions are highly divergent and cannot readily be aligned. The region is suggested to help span the periplasm.
Probab=20.19 E-value=3e+02 Score=18.79 Aligned_cols=35 Identities=23% Similarity=0.270 Sum_probs=19.3
Q ss_pred eEEEEEEEcCCCceEEEEEEE-EEcCCCCchhHHHHHH
Q 026912 155 HVRVDLMLNSKDFSVDIEGEA-VSSGKTGVEMEAMTAV 191 (231)
Q Consensus 155 ~v~V~~~~~~~~~~v~i~~~v-~t~~kTGVEMEALtav 191 (231)
.|.|.|.+++++.-. .+++ ++.+....+-+||-++
T Consensus 11 ~v~v~~~i~~~G~v~--~~~i~~ssg~~~ld~~a~~av 46 (74)
T TIGR01352 11 TVVVRFTVDADGRVT--SVSVLKSSGDEALDRAALEAV 46 (74)
T ss_pred EEEEEEEECCCCCEE--EEEEEEcCCChhHHHHHHHHH
Confidence 378889998765333 3333 3444444555555444
No 27
>PF02233 PNTB: NAD(P) transhydrogenase beta subunit; InterPro: IPR012136 NAD(P) transhydrogenase catalyses the transfer of reducing equivalents between NAD(H) and NADP(H), coupled to the translocation of protons across a membrane []. It is an integral membrane protein found in most organisms except for yeasts, plants and some bacterial species. In bacterial species it is located in the cytoplasmic membrane, while in mitochondria it is located in the inner membrane. Under most physiological conditions this enzyme synthesises NADPH, driven by consumption of the proton electrochemical gradient. The resulting NADPH is subsequently used for biosynthetic reactions or the reduction of glutathione. The global structure of this enzyme is similar in all organisms, consisting of three distinct domains, though the polypeptide composition can vary. Domain I binds NAD(+)/NADH, domain II is a hydrophobic membrane-spanning domain, and domain III binds NADP(+)/NADPH. Domain I is composed of two subdomains, both of which form a Rossman fold, while domain III consists of a single Rossman fold where the NADP(+) is flipped relative to the normal orientation of bound nucleotides within the Rossman fold [, , ]. Several residues within these domains are thought to make functionally important interdomain contacts for hydride transfer between these domains []. Proton translocation occurs through domain II and is thought to induce conformational changes which are transmitted across domain III to the site of hydride transfer between domains I and III. This entry represents the beta subunit found in bacterial two-subunit NADP(H) transhydrogenases. This subunit forms domain III and part of the transmembrane domain II. ; GO: 0008750 NAD(P)+ transhydrogenase (AB-specific) activity, 0050661 NADP binding, 0055114 oxidation-reduction process, 0016021 integral to membrane; PDB: 1PT9_A 1DJL_A 1U31_B 2BRU_C 1PTJ_C 1HZZ_C 2FRD_C 2FSV_C 1XLT_C 1U2G_C ....
Probab=20.11 E-value=35 Score=34.11 Aligned_cols=22 Identities=41% Similarity=0.607 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHhhhhccCCce
Q 026912 187 AMTAVTVAGLTVYDMCKAASKDI 209 (231)
Q Consensus 187 ALtavsvA~LTIYDM~Kavdk~m 209 (231)
||-|.|-+.|| |.|||+..++.
T Consensus 245 alvGaSG~iLt-~iMc~aMNRsl 266 (463)
T PF02233_consen 245 ALVGASGAILT-YIMCKAMNRSL 266 (463)
T ss_dssp -----------------------
T ss_pred HHHHHhHHHHH-HHHhhccCCCH
Confidence 78888888888 99999999864
Done!