Query 026913
Match_columns 231
No_of_seqs 175 out of 1195
Neff 5.9
Searched_HMMs 46136
Date Fri Mar 29 14:27:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026913.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026913hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02885 nicotinate phosphorib 100.0 3.2E-67 7E-72 505.4 22.9 229 1-231 292-522 (545)
2 PRK09243 nicotinate phosphorib 100.0 2.1E-57 4.6E-62 431.9 20.6 217 2-231 239-459 (464)
3 TIGR01513 NAPRTase_put putativ 100.0 4.7E-56 1E-60 420.3 22.1 209 2-231 230-438 (443)
4 PRK12484 nicotinate phosphorib 100.0 3.3E-52 7.2E-57 394.2 20.9 193 4-231 234-426 (443)
5 PRK09198 putative nicotinate p 100.0 4.8E-36 1E-40 284.6 17.9 173 4-211 270-462 (463)
6 PHA02594 nadV nicotinamide pho 100.0 1.2E-35 2.6E-40 281.9 18.2 176 4-211 276-469 (470)
7 COG1488 PncB Nicotinic acid ph 100.0 5E-34 1.1E-38 267.8 11.7 159 2-209 246-405 (405)
8 KOG2511 Nicotinic acid phospho 100.0 6E-33 1.3E-37 251.6 7.6 167 1-187 251-417 (420)
9 cd01401 PncB_like Nicotinate p 100.0 2.5E-31 5.5E-36 247.3 12.9 112 4-124 258-377 (377)
10 PRK05321 nicotinate phosphorib 100.0 2.3E-30 5.1E-35 242.4 13.2 118 5-131 262-384 (400)
11 TIGR01514 NAPRTase nicotinate 100.0 5.1E-30 1.1E-34 239.6 12.9 112 4-124 261-377 (394)
12 PF04095 NAPRTase: Nicotinate 100.0 6.2E-30 1.3E-34 225.9 6.9 130 2-135 94-241 (245)
13 cd01569 PBEF_like pre-B-cell c 99.9 4.5E-27 9.8E-32 220.0 13.2 122 5-127 269-407 (407)
14 cd01570 NAPRTase_A Nicotinate 99.9 1E-26 2.3E-31 213.2 11.3 98 2-106 230-327 (327)
15 PRK07188 nicotinate phosphorib 99.9 2.8E-24 6.1E-29 198.8 13.2 102 3-118 214-337 (352)
16 cd01567 NAPRTase_PncB Nicotina 99.8 4.7E-21 1E-25 176.3 10.7 93 4-104 247-343 (343)
17 PRK08662 nicotinate phosphorib 99.8 2.7E-18 5.8E-23 158.7 12.3 113 4-132 213-330 (343)
18 cd01571 NAPRTase_B Nicotinate 99.7 1.4E-16 3E-21 145.0 12.8 99 4-117 197-300 (302)
19 cd00516 PRTase_typeII Phosphor 99.3 1.2E-11 2.7E-16 110.4 9.0 72 21-104 205-281 (281)
20 PF01729 QRPTase_C: Quinolinat 98.0 9.1E-06 2E-10 68.6 6.0 70 21-104 100-169 (169)
21 PRK08385 nicotinate-nucleotide 97.2 0.0024 5.1E-08 58.0 9.7 73 22-107 203-276 (278)
22 PRK05848 nicotinate-nucleotide 97.2 0.0019 4.2E-08 58.4 8.7 70 22-105 203-272 (273)
23 PRK07896 nicotinate-nucleotide 96.8 0.0062 1.4E-07 55.6 8.3 72 19-104 217-288 (289)
24 cd01573 modD_like ModD; Quinol 96.5 0.014 3.1E-07 52.7 8.7 68 23-105 205-272 (272)
25 PRK07428 nicotinate-nucleotide 96.1 0.046 1E-06 49.9 9.5 73 20-106 215-287 (288)
26 PRK05742 nicotinate-nucleotide 96.0 0.066 1.4E-06 48.6 10.4 46 56-106 232-277 (277)
27 PRK09016 quinolinate phosphori 95.6 0.075 1.6E-06 48.8 8.9 67 22-105 229-295 (296)
28 TIGR00078 nadC nicotinate-nucl 94.8 0.13 2.8E-06 46.4 7.8 43 58-105 223-265 (265)
29 PRK06106 nicotinate-nucleotide 94.3 0.22 4.8E-06 45.4 8.0 69 20-105 213-281 (281)
30 cd01568 QPRTase_NadC Quinolina 93.6 0.31 6.8E-06 43.8 7.7 67 22-103 202-268 (269)
31 TIGR00640 acid_CoA_mut_C methy 93.1 0.63 1.4E-05 37.6 8.0 68 17-92 51-118 (132)
32 PRK06552 keto-hydroxyglutarate 93.0 0.44 9.4E-06 41.6 7.4 61 17-92 127-188 (213)
33 cd00452 KDPG_aldolase KDPG and 92.2 0.6 1.3E-05 39.4 7.1 62 17-92 115-176 (190)
34 TIGR01182 eda Entner-Doudoroff 91.6 0.29 6.3E-06 42.6 4.6 37 54-92 145-181 (204)
35 PRK06096 molybdenum transport 90.6 2.1 4.4E-05 39.2 9.3 72 22-108 210-281 (284)
36 cd02071 MM_CoA_mut_B12_BD meth 90.2 2.2 4.8E-05 33.5 8.1 66 19-92 50-115 (122)
37 cd01572 QPRTase Quinolinate ph 90.1 1.5 3.4E-05 39.4 8.0 43 57-104 226-268 (268)
38 PRK07114 keto-hydroxyglutarate 90.1 0.46 9.9E-06 41.9 4.5 37 54-92 155-193 (222)
39 COG2185 Sbm Methylmalonyl-CoA 89.7 2.2 4.8E-05 35.3 8.0 66 19-92 63-128 (143)
40 PRK08072 nicotinate-nucleotide 89.6 1.9 4.1E-05 39.2 8.2 44 57-105 232-275 (277)
41 cd04726 KGPDC_HPS 3-Keto-L-gul 89.5 0.46 9.9E-06 39.8 3.9 37 56-94 157-193 (202)
42 cd02072 Glm_B12_BD B12 binding 89.4 3.2 6.8E-05 33.6 8.5 55 30-92 61-121 (128)
43 PRK02261 methylaspartate mutas 89.1 2.9 6.3E-05 33.9 8.2 64 21-92 56-125 (137)
44 PF01081 Aldolase: KDPG and KH 88.8 0.41 9E-06 41.4 3.2 38 54-93 145-182 (196)
45 PRK05718 keto-hydroxyglutarate 88.1 1.9 4.1E-05 37.6 6.9 63 15-92 124-188 (212)
46 TIGR03128 RuMP_HxlA 3-hexulose 87.6 1.3 2.9E-05 37.3 5.5 37 56-94 157-193 (206)
47 PRK07455 keto-hydroxyglutarate 87.5 1.2 2.6E-05 37.9 5.2 37 54-92 149-185 (187)
48 COG0157 NadC Nicotinate-nucleo 87.4 6.1 0.00013 36.2 9.8 47 56-107 233-279 (280)
49 PRK06978 nicotinate-nucleotide 87.2 4.4 9.6E-05 37.3 9.0 68 22-106 226-293 (294)
50 PRK06543 nicotinate-nucleotide 86.8 4 8.6E-05 37.3 8.4 67 22-105 214-280 (281)
51 TIGR01305 GMP_reduct_1 guanosi 86.5 2 4.4E-05 40.3 6.4 91 9-108 109-207 (343)
52 cd00564 TMP_TenI Thiamine mono 86.5 0.82 1.8E-05 37.4 3.6 36 56-93 149-184 (196)
53 PRK08883 ribulose-phosphate 3- 86.4 1.5 3.3E-05 38.3 5.4 35 57-93 167-201 (220)
54 PRK05096 guanosine 5'-monophos 86.2 2.3 5.1E-05 39.9 6.7 90 10-108 111-208 (346)
55 cd04729 NanE N-acetylmannosami 86.0 1.9 4.2E-05 36.9 5.8 36 57-94 177-213 (219)
56 TIGR00693 thiE thiamine-phosph 85.4 1 2.2E-05 37.7 3.6 36 57-94 152-187 (196)
57 PRK09140 2-dehydro-3-deoxy-6-p 84.9 2.7 5.8E-05 36.4 6.1 63 17-93 122-185 (206)
58 PRK08745 ribulose-phosphate 3- 84.8 2.7 5.8E-05 37.0 6.1 37 54-93 169-205 (223)
59 PRK06559 nicotinate-nucleotide 84.6 5.7 0.00012 36.5 8.4 68 22-106 218-285 (290)
60 PRK00043 thiE thiamine-phospha 84.3 1.8 3.9E-05 36.3 4.7 37 56-94 159-195 (212)
61 COG0800 Eda 2-keto-3-deoxy-6-p 83.8 1.5 3.3E-05 38.5 4.1 37 54-92 150-186 (211)
62 TIGR01334 modD putative molybd 83.8 11 0.00024 34.3 9.8 66 22-102 209-274 (277)
63 PRK01130 N-acetylmannosamine-6 82.8 3.2 6.8E-05 35.6 5.7 34 57-92 173-207 (221)
64 PLN02716 nicotinate-nucleotide 81.7 12 0.00025 34.8 9.2 44 57-105 262-305 (308)
65 PRK07807 inosine 5-monophospha 81.6 2.8 6E-05 41.0 5.4 129 10-152 230-368 (479)
66 PRK05581 ribulose-phosphate 3- 81.5 4.9 0.00011 34.0 6.3 36 58-95 171-206 (220)
67 PRK14057 epimerase; Provisiona 80.4 4.6 0.0001 36.4 6.0 36 54-92 191-226 (254)
68 PRK08091 ribulose-phosphate 3- 79.8 5.4 0.00012 35.3 6.1 36 54-92 177-212 (228)
69 PRK07695 transcriptional regul 79.7 2 4.2E-05 36.4 3.3 36 57-94 149-184 (201)
70 PRK06015 keto-hydroxyglutarate 79.6 3.3 7.2E-05 36.0 4.7 37 54-92 141-177 (201)
71 PRK09722 allulose-6-phosphate 79.4 4.8 0.0001 35.6 5.7 36 54-92 167-203 (229)
72 TIGR01303 IMP_DH_rel_1 IMP deh 79.3 4.1 8.9E-05 39.7 5.7 89 9-106 227-321 (475)
73 TIGR01163 rpe ribulose-phospha 77.9 5.7 0.00012 33.2 5.6 35 58-94 166-200 (210)
74 cd00429 RPE Ribulose-5-phospha 77.8 8.1 0.00018 32.2 6.5 36 57-94 166-201 (211)
75 cd02932 OYE_YqiM_FMN Old yello 77.3 8.3 0.00018 35.4 6.9 76 5-94 240-327 (336)
76 TIGR01302 IMP_dehydrog inosine 76.8 3.2 7E-05 39.9 4.2 90 7-107 224-321 (450)
77 PRK05567 inosine 5'-monophosph 75.9 6.3 0.00014 38.3 5.9 89 8-107 229-325 (486)
78 KOG2550 IMP dehydrogenase/GMP 75.8 5 0.00011 38.8 5.0 86 22-116 264-360 (503)
79 PTZ00314 inosine-5'-monophosph 75.5 9 0.00019 37.5 6.9 92 6-106 240-337 (495)
80 TIGR01037 pyrD_sub1_fam dihydr 75.0 12 0.00026 33.6 7.2 33 58-92 235-268 (300)
81 PRK04302 triosephosphate isome 75.0 10 0.00022 32.8 6.5 37 56-94 172-209 (223)
82 COG0269 SgbH 3-hexulose-6-phos 74.3 17 0.00038 32.1 7.7 36 58-95 165-200 (217)
83 PTZ00170 D-ribulose-5-phosphat 72.8 28 0.00061 30.3 8.8 35 57-93 173-207 (228)
84 cd04731 HisF The cyclase subun 72.7 12 0.00025 32.5 6.3 72 7-93 150-229 (243)
85 PF00834 Ribul_P_3_epim: Ribul 72.3 3.6 7.8E-05 35.6 2.9 45 38-92 155-199 (201)
86 COG0036 Rpe Pentose-5-phosphat 72.2 7.8 0.00017 34.3 5.0 36 57-94 169-204 (220)
87 PRK08508 biotin synthase; Prov 71.1 34 0.00073 30.7 9.1 74 6-87 43-119 (279)
88 PRK04180 pyridoxal biosynthesi 70.9 22 0.00047 32.8 7.8 74 18-95 140-242 (293)
89 PF01645 Glu_synthase: Conserv 68.9 6.7 0.00015 37.2 4.2 55 35-103 258-314 (368)
90 PRK13307 bifunctional formalde 68.3 16 0.00034 35.0 6.6 36 57-94 330-365 (391)
91 PLN02334 ribulose-phosphate 3- 67.8 7.5 0.00016 33.7 4.0 35 57-93 174-208 (229)
92 cd02803 OYE_like_FMN_family Ol 67.5 32 0.00069 31.0 8.2 36 57-93 281-317 (327)
93 PRK07028 bifunctional hexulose 67.2 22 0.00048 33.8 7.4 35 58-94 163-197 (430)
94 PRK07259 dihydroorotate dehydr 67.0 22 0.00048 31.9 7.0 34 57-92 234-268 (301)
95 TIGR02129 hisA_euk phosphoribo 65.8 29 0.00064 31.2 7.5 69 9-93 41-110 (253)
96 PRK13125 trpA tryptophan synth 65.3 7.3 0.00016 34.2 3.5 33 58-92 186-219 (244)
97 cd04740 DHOD_1B_like Dihydroor 64.6 42 0.0009 30.0 8.3 35 57-93 231-266 (296)
98 PF00733 Asn_synthase: Asparag 63.8 9.8 0.00021 32.1 3.9 53 38-92 1-56 (255)
99 cd04734 OYE_like_3_FMN Old yel 63.6 26 0.00056 32.5 6.9 37 57-94 285-322 (343)
100 PRK00278 trpC indole-3-glycero 63.3 26 0.00057 31.2 6.7 36 58-95 213-248 (260)
101 PRK07107 inosine 5-monophospha 63.2 18 0.00038 35.7 6.0 95 4-107 239-340 (502)
102 cd00331 IGPS Indole-3-glycerol 62.6 34 0.00073 29.1 7.0 37 56-94 171-208 (217)
103 PRK09426 methylmalonyl-CoA mut 62.5 32 0.00069 35.4 7.9 69 16-92 630-698 (714)
104 PTZ00441 sporozoite surface pr 61.9 25 0.00055 35.3 6.8 36 54-89 148-189 (576)
105 cd02933 OYE_like_FMN Old yello 61.7 37 0.0008 31.5 7.6 36 57-93 285-320 (338)
106 TIGR03572 WbuZ glycosyl amidat 61.0 31 0.00066 29.7 6.6 32 57-90 197-230 (232)
107 cd04733 OYE_like_2_FMN Old yel 60.7 42 0.0009 30.8 7.7 37 57-94 292-329 (338)
108 PRK06843 inosine 5-monophospha 60.7 38 0.00082 32.6 7.6 91 6-105 152-248 (404)
109 cd04735 OYE_like_4_FMN Old yel 60.5 19 0.00041 33.4 5.5 74 5-93 234-319 (353)
110 PRK10605 N-ethylmaleimide redu 60.5 31 0.00068 32.3 6.9 43 58-106 293-335 (362)
111 cd02801 DUS_like_FMN Dihydrour 60.0 49 0.0011 28.0 7.6 36 56-93 182-219 (231)
112 cd02812 PcrB_like PcrB_like pr 59.5 42 0.00092 29.5 7.2 70 10-93 139-210 (219)
113 cd00311 TIM Triosephosphate is 58.0 30 0.00064 30.8 6.0 54 34-92 180-233 (242)
114 PF00478 IMPDH: IMP dehydrogen 57.6 13 0.00029 35.0 3.9 92 8-108 109-206 (352)
115 cd04722 TIM_phosphate_binding 57.1 13 0.00027 29.7 3.3 31 56-88 169-200 (200)
116 PRK08005 epimerase; Validated 57.0 17 0.00038 31.7 4.3 32 59-92 165-196 (210)
117 cd02930 DCR_FMN 2,4-dienoyl-Co 57.0 19 0.00042 33.3 4.9 76 5-94 223-313 (353)
118 PRK07114 keto-hydroxyglutarate 56.6 99 0.0021 27.2 9.0 66 6-79 27-92 (222)
119 cd04730 NPD_like 2-Nitropropan 56.5 10 0.00022 32.4 2.8 40 57-98 156-196 (236)
120 TIGR01501 MthylAspMutase methy 56.1 89 0.0019 25.4 8.1 54 30-91 63-122 (134)
121 TIGR01182 eda Entner-Doudoroff 55.8 80 0.0017 27.4 8.2 97 5-116 19-127 (204)
122 cd02931 ER_like_FMN Enoate red 55.6 35 0.00077 32.1 6.5 74 5-94 251-342 (382)
123 cd00452 KDPG_aldolase KDPG and 54.1 81 0.0018 26.4 7.9 63 6-80 16-78 (190)
124 PF06135 DUF965: Bacterial pro 53.1 15 0.00033 27.4 2.8 41 5-46 17-64 (79)
125 PRK13523 NADPH dehydrogenase N 51.8 31 0.00067 32.0 5.3 36 57-93 275-311 (337)
126 cd04738 DHOD_2_like Dihydrooro 51.3 50 0.0011 30.3 6.6 34 57-92 280-314 (327)
127 PRK06582 coproporphyrinogen II 51.0 31 0.00067 32.6 5.3 69 21-89 62-132 (390)
128 cd04727 pdxS PdxS is a subunit 50.8 49 0.0011 30.4 6.3 35 58-94 195-232 (283)
129 cd00381 IMPDH IMPDH: The catal 50.6 65 0.0014 29.7 7.3 89 7-106 94-190 (325)
130 PF01884 PcrB: PcrB family; I 50.5 92 0.002 27.7 7.8 64 18-92 152-216 (230)
131 cd02810 DHOD_DHPD_FMN Dihydroo 50.3 64 0.0014 28.6 7.0 35 57-93 243-278 (289)
132 cd02808 GltS_FMN Glutamate syn 50.3 96 0.0021 29.4 8.5 47 37-92 271-319 (392)
133 PLN02429 triosephosphate isome 48.3 44 0.00096 31.1 5.7 36 56-92 262-297 (315)
134 cd01469 vWA_integrins_alpha_su 48.3 35 0.00076 28.0 4.7 38 53-90 101-144 (177)
135 PRK14567 triosephosphate isome 47.4 71 0.0015 28.8 6.7 36 56-92 201-236 (253)
136 PRK09431 asnB asparagine synth 46.9 51 0.0011 32.7 6.3 57 31-89 204-276 (554)
137 COG0134 TrpC Indole-3-glycerol 46.8 49 0.0011 29.9 5.6 73 10-95 168-244 (254)
138 PRK07379 coproporphyrinogen II 46.7 1.1E+02 0.0023 28.9 8.2 80 10-89 52-136 (400)
139 TIGR00177 molyb_syn molybdenum 46.3 1.5E+02 0.0033 23.6 8.6 33 10-42 31-63 (144)
140 TIGR00736 nifR3_rel_arch TIM-b 46.1 65 0.0014 28.5 6.2 74 7-92 149-225 (231)
141 PRK13585 1-(5-phosphoribosyl)- 46.1 65 0.0014 27.7 6.2 35 57-93 193-228 (241)
142 cd06294 PBP1_ycjW_transcriptio 46.0 1.1E+02 0.0025 25.5 7.6 63 13-85 28-90 (270)
143 cd02911 arch_FMN Archeal FMN-b 45.6 72 0.0016 28.0 6.4 31 57-89 191-222 (233)
144 cd01456 vWA_ywmD_type VWA ywmD 45.6 71 0.0015 26.7 6.2 37 53-89 132-179 (206)
145 cd02940 DHPD_FMN Dihydropyrimi 45.4 1.2E+02 0.0025 27.4 8.0 34 57-92 252-286 (299)
146 PRK00042 tpiA triosephosphate 45.1 61 0.0013 29.0 6.0 37 55-92 201-237 (250)
147 TIGR00262 trpA tryptophan synt 44.9 25 0.00054 31.3 3.5 34 57-92 198-232 (256)
148 PRK08898 coproporphyrinogen II 44.6 1.3E+02 0.0028 28.3 8.4 70 20-89 72-143 (394)
149 cd01473 vWA_CTRP CTRP for CS 44.4 78 0.0017 26.6 6.3 34 55-88 108-149 (192)
150 PRK05473 hypothetical protein; 44.2 19 0.00042 27.3 2.2 41 5-46 20-67 (86)
151 cd01464 vWA_subfamily VWA subf 44.0 97 0.0021 25.1 6.7 35 55-89 107-148 (176)
152 PRK08649 inosine 5-monophospha 43.7 69 0.0015 30.3 6.4 43 56-100 255-298 (368)
153 cd00381 IMPDH IMPDH: The catal 42.9 1.3E+02 0.0029 27.7 8.0 39 57-97 197-236 (325)
154 smart00878 Biotin_carb_C Bioti 42.7 8.2 0.00018 30.1 0.0 33 58-90 52-84 (107)
155 PRK02615 thiamine-phosphate py 42.5 26 0.00056 32.9 3.3 36 57-94 294-329 (347)
156 COG0800 Eda 2-keto-3-deoxy-6-p 42.2 1.2E+02 0.0025 26.8 7.1 75 5-79 24-107 (211)
157 PRK13361 molybdenum cofactor b 41.8 1.5E+02 0.0034 26.9 8.3 63 10-76 105-177 (329)
158 PRK14565 triosephosphate isome 40.9 72 0.0016 28.4 5.7 36 56-92 188-223 (237)
159 PRK14024 phosphoribosyl isomer 40.7 90 0.0019 27.3 6.3 72 7-93 33-110 (241)
160 cd01477 vWA_F09G8-8_type VWA F 40.5 54 0.0012 27.8 4.7 37 53-89 129-172 (193)
161 PRK06015 keto-hydroxyglutarate 40.4 1.9E+02 0.0041 25.1 8.1 63 5-79 15-77 (201)
162 TIGR01536 asn_synth_AEB aspara 40.0 85 0.0018 30.0 6.5 56 32-89 231-290 (467)
163 PTZ00077 asparagine synthetase 39.9 83 0.0018 31.6 6.6 56 32-89 215-284 (586)
164 cd01471 vWA_micronemal_protein 39.7 94 0.002 25.3 6.0 37 54-90 107-149 (186)
165 PF01791 DeoC: DeoC/LacD famil 39.6 1.1E+02 0.0025 26.3 6.7 69 5-84 148-227 (236)
166 PRK13396 3-deoxy-7-phosphohept 39.3 1.3E+02 0.0028 28.4 7.4 79 6-94 115-198 (352)
167 cd06273 PBP1_GntR_like_1 This 38.9 1.9E+02 0.0041 24.2 7.9 64 11-85 21-85 (268)
168 PTZ00413 lipoate synthase; Pro 38.5 1.2E+02 0.0025 29.3 7.0 66 9-85 183-257 (398)
169 PRK05718 keto-hydroxyglutarate 38.3 2E+02 0.0044 25.0 8.0 26 6-31 27-52 (212)
170 TIGR03104 trio_amidotrans aspa 37.8 1E+02 0.0022 30.8 6.8 55 33-89 239-296 (589)
171 cd04747 OYE_like_5_FMN Old yel 37.7 59 0.0013 30.6 4.9 36 57-93 280-334 (361)
172 TIGR00433 bioB biotin syntheta 37.7 2.8E+02 0.006 24.4 9.1 30 58-89 112-142 (296)
173 PLN02274 inosine-5'-monophosph 37.6 1E+02 0.0022 30.4 6.7 72 6-87 247-319 (505)
174 COG3142 CutC Uncharacterized p 37.4 50 0.0011 29.6 4.1 55 23-77 56-112 (241)
175 cd06297 PBP1_LacI_like_12 Liga 37.4 1.9E+02 0.0042 24.5 7.8 64 12-85 22-85 (269)
176 cd01542 PBP1_TreR_like Ligand- 37.2 2.3E+02 0.005 23.5 8.2 63 13-86 23-86 (259)
177 PRK05465 ethanolamine ammonia- 36.8 42 0.00091 30.5 3.6 43 24-73 85-127 (260)
178 smart00633 Glyco_10 Glycosyl h 36.7 96 0.0021 27.1 5.9 36 56-92 117-163 (254)
179 cd01454 vWA_norD_type norD typ 36.7 56 0.0012 26.4 4.1 38 55-92 103-156 (174)
180 cd00958 DhnA Class I fructose- 36.7 1.9E+02 0.004 24.8 7.6 36 58-95 180-222 (235)
181 PRK11572 copper homeostasis pr 36.6 49 0.0011 29.8 4.0 55 23-77 56-112 (248)
182 PF00977 His_biosynth: Histidi 36.5 63 0.0014 28.0 4.6 34 57-92 191-225 (229)
183 PRK14905 triosephosphate isome 36.4 1.3E+02 0.0028 28.4 6.9 37 55-92 211-247 (355)
184 cd04731 HisF The cyclase subun 36.3 1.4E+02 0.0031 25.7 6.8 72 7-93 28-106 (243)
185 TIGR02814 pfaD_fam PfaD family 36.3 1.6E+02 0.0036 28.7 7.8 63 30-97 199-263 (444)
186 PLN02561 triosephosphate isome 36.2 1E+02 0.0022 27.7 6.0 34 56-90 203-236 (253)
187 COG1058 CinA Predicted nucleot 36.1 1.1E+02 0.0024 27.6 6.2 50 6-66 21-70 (255)
188 PRK08207 coproporphyrinogen II 35.9 1.1E+02 0.0024 29.9 6.7 69 20-88 217-289 (488)
189 TIGR01304 IMP_DH_rel_2 IMP deh 35.7 79 0.0017 30.0 5.4 59 40-107 245-304 (369)
190 PF05985 EutC: Ethanolamine am 35.6 19 0.00041 32.3 1.2 40 26-72 80-119 (237)
191 PRK10415 tRNA-dihydrouridine s 35.6 1.5E+02 0.0032 27.2 7.1 34 57-92 194-229 (321)
192 PLN02591 tryptophan synthase 35.2 45 0.00098 29.8 3.5 35 56-92 188-223 (250)
193 cd05294 LDH-like_MDH_nadp A la 34.9 91 0.002 28.4 5.6 57 34-90 92-149 (309)
194 COG1059 Thermostable 8-oxoguan 34.8 38 0.00082 29.6 2.8 57 11-89 76-132 (210)
195 TIGR01306 GMP_reduct_2 guanosi 34.8 3.4E+02 0.0075 25.2 9.4 72 7-87 94-167 (321)
196 PF15560 Imm8: Immunity protei 34.6 45 0.00098 27.2 3.1 39 31-69 18-58 (133)
197 PRK09057 coproporphyrinogen II 34.4 1.9E+02 0.0041 27.0 7.7 70 20-89 54-125 (380)
198 PRK05660 HemN family oxidoredu 34.2 1.6E+02 0.0034 27.5 7.2 70 20-89 57-128 (378)
199 PLN02411 12-oxophytodienoate r 34.2 1.4E+02 0.0031 28.2 6.9 51 58-116 314-364 (391)
200 cd01472 vWA_collagen von Wille 34.1 85 0.0018 25.0 4.8 37 53-89 101-141 (164)
201 cd01452 VWA_26S_proteasome_sub 34.1 1.7E+02 0.0037 24.9 6.8 34 57-90 109-148 (187)
202 TIGR03108 eps_aminotran_1 exos 34.1 1.2E+02 0.0026 30.2 6.7 57 31-89 235-294 (628)
203 smart00500 SFM Splicing Factor 33.7 29 0.00063 23.1 1.5 21 67-87 3-23 (44)
204 PRK13398 3-deoxy-7-phosphohept 33.6 2.5E+02 0.0054 25.2 8.1 74 5-94 40-124 (266)
205 cd01480 vWA_collagen_alpha_1-V 33.3 1.9E+02 0.004 23.8 6.8 36 53-88 107-150 (186)
206 COG4302 EutC Ethanolamine ammo 33.2 34 0.00075 31.1 2.4 63 22-91 132-201 (294)
207 CHL00200 trpA tryptophan synth 32.9 72 0.0016 28.7 4.5 36 56-93 201-237 (263)
208 PRK11750 gltB glutamate syntha 32.8 59 0.0013 36.3 4.5 60 30-103 1045-1107(1485)
209 PF01081 Aldolase: KDPG and KH 32.7 2.5E+02 0.0054 24.2 7.6 63 5-79 19-81 (196)
210 cd05290 LDH_3 A subgroup of L- 32.7 66 0.0014 29.4 4.3 56 37-92 93-149 (307)
211 cd06278 PBP1_LacI_like_2 Ligan 32.7 2.1E+02 0.0045 23.8 7.1 65 12-87 22-86 (266)
212 TIGR01769 GGGP geranylgeranylg 32.3 1.7E+02 0.0037 25.4 6.6 66 10-87 138-205 (205)
213 cd01458 vWA_ku Ku70/Ku80 N-ter 32.3 1.5E+02 0.0033 25.1 6.2 57 29-89 105-173 (218)
214 PRK00876 nadE NAD synthetase; 32.3 1.1E+02 0.0025 28.4 5.8 57 30-89 10-68 (326)
215 PF04123 DUF373: Domain of unk 32.0 1.7E+02 0.0038 27.5 7.0 72 5-81 50-124 (344)
216 TIGR00735 hisF imidazoleglycer 31.8 2.2E+02 0.0048 24.9 7.4 77 7-94 31-110 (254)
217 cd04742 NPD_FabD 2-Nitropropan 31.5 2.1E+02 0.0046 27.6 7.7 72 21-97 179-258 (418)
218 cd06295 PBP1_CelR Ligand bindi 31.5 2.5E+02 0.0054 23.7 7.5 63 12-86 33-95 (275)
219 PRK01033 imidazole glycerol ph 31.4 1.2E+02 0.0026 26.8 5.6 72 7-93 31-109 (258)
220 cd00885 cinA Competence-damage 31.1 1.7E+02 0.0036 24.4 6.2 27 10-36 23-49 (170)
221 PRK02655 psbI photosystem II r 31.1 28 0.0006 22.4 1.1 14 116-131 24-37 (38)
222 PF03060 NMO: Nitronate monoox 30.9 1.1E+02 0.0024 28.1 5.4 65 19-98 164-230 (330)
223 cd02809 alpha_hydroxyacid_oxid 30.8 2.3E+02 0.005 25.5 7.5 34 57-92 227-261 (299)
224 PRK15492 triosephosphate isome 30.7 1.6E+02 0.0034 26.6 6.2 46 39-89 198-243 (260)
225 PTZ00333 triosephosphate isome 30.7 1.8E+02 0.0039 26.1 6.6 36 56-92 206-241 (255)
226 PF03437 BtpA: BtpA family; I 30.6 83 0.0018 28.3 4.4 32 58-92 201-232 (254)
227 PRK05799 coproporphyrinogen II 30.5 2.6E+02 0.0055 25.8 7.9 76 10-86 38-117 (374)
228 PRK13111 trpA tryptophan synth 30.5 75 0.0016 28.4 4.2 36 56-94 199-235 (258)
229 PF13519 VWA_2: von Willebrand 30.3 1.1E+02 0.0024 23.6 4.7 37 55-91 99-139 (172)
230 COG2896 MoaA Molybdenum cofact 30.2 3E+02 0.0064 25.8 8.1 64 10-77 102-175 (322)
231 COG1902 NemA NADH:flavin oxido 30.2 1.9E+02 0.0041 27.3 7.0 35 58-93 289-324 (363)
232 TIGR01949 AroFGH_arch predicte 29.8 62 0.0013 28.5 3.5 37 57-95 192-235 (258)
233 cd06309 PBP1_YtfQ_like Peripla 29.5 2.6E+02 0.0057 23.5 7.3 62 13-85 23-87 (273)
234 PRK03670 competence damage-ind 29.4 1.6E+02 0.0034 26.3 6.0 50 7-66 21-70 (252)
235 PRK05458 guanosine 5'-monophos 29.4 4.3E+02 0.0093 24.6 9.1 74 7-89 97-174 (326)
236 cd06316 PBP1_ABC_sugar_binding 29.3 2.4E+02 0.0053 24.2 7.2 65 12-85 22-88 (294)
237 cd01482 vWA_collagen_alphaI-XI 29.2 99 0.0021 24.7 4.4 35 54-88 102-140 (164)
238 PRK08255 salicylyl-CoA 5-hydro 29.0 1.8E+02 0.004 29.9 7.2 36 57-93 687-723 (765)
239 cd01450 vWFA_subfamily_ECM Von 28.8 93 0.002 23.9 4.0 35 54-88 102-142 (161)
240 PRK06552 keto-hydroxyglutarate 28.8 3E+02 0.0064 23.9 7.5 16 200-215 194-209 (213)
241 PRK06223 malate dehydrogenase; 28.7 1.5E+02 0.0032 26.6 5.8 38 54-91 110-148 (307)
242 PRK08208 coproporphyrinogen II 28.6 1.2E+02 0.0026 28.9 5.4 65 25-89 95-162 (430)
243 PLN02549 asparagine synthase ( 28.4 1.5E+02 0.0033 29.7 6.3 53 34-88 205-269 (578)
244 cd00198 vWFA Von Willebrand fa 28.3 2E+02 0.0043 21.3 5.8 35 54-88 100-141 (161)
245 PRK13585 1-(5-phosphoribosyl)- 28.3 2.4E+02 0.0052 24.1 6.9 74 7-92 33-110 (241)
246 PF13768 VWA_3: von Willebrand 28.2 2.3E+02 0.0049 22.1 6.3 38 52-89 93-136 (155)
247 cd05293 LDH_1 A subgroup of L- 28.0 95 0.0021 28.4 4.5 55 38-92 95-150 (312)
248 PRK10550 tRNA-dihydrouridine s 28.0 2.5E+02 0.0055 25.7 7.3 33 59-92 196-229 (312)
249 TIGR02151 IPP_isom_2 isopenten 27.8 46 0.001 30.7 2.4 36 56-93 253-289 (333)
250 cd06283 PBP1_RegR_EndR_KdgR_li 27.7 3.5E+02 0.0076 22.4 7.8 64 12-86 22-86 (267)
251 cd06318 PBP1_ABC_sugar_binding 27.7 2.9E+02 0.0063 23.3 7.3 63 12-85 22-87 (282)
252 cd07410 MPP_CpdB_N Escherichia 27.7 3.5E+02 0.0076 23.7 8.0 96 3-112 27-140 (277)
253 cd01475 vWA_Matrilin VWA_Matri 27.5 1.3E+02 0.0029 25.5 5.1 33 56-88 109-145 (224)
254 PRK02083 imidazole glycerol ph 26.6 2.9E+02 0.0062 24.1 7.1 76 7-93 31-109 (253)
255 COG0149 TpiA Triosephosphate i 26.6 2.1E+02 0.0046 25.8 6.3 54 33-92 183-236 (251)
256 TIGR00419 tim triosephosphate 26.5 90 0.0019 27.1 3.8 35 56-91 168-202 (205)
257 PLN02389 biotin synthase 26.5 5.2E+02 0.011 24.5 9.2 70 7-86 120-194 (379)
258 PRK06843 inosine 5-monophospha 26.4 5E+02 0.011 25.0 9.1 40 57-98 256-296 (404)
259 PRK12376 putative translaldola 26.2 1.7E+02 0.0037 26.0 5.6 45 26-79 147-193 (236)
260 PRK12928 lipoyl synthase; Prov 26.1 3.6E+02 0.0079 24.4 7.9 73 7-86 91-171 (290)
261 cd04732 HisA HisA. Phosphorib 26.0 2E+02 0.0044 24.3 6.0 35 57-93 190-225 (234)
262 PF02057 Glyco_hydro_59: Glyco 25.5 1.1E+02 0.0024 31.4 4.7 41 21-68 175-215 (669)
263 cd06298 PBP1_CcpA_like Ligand- 25.4 3.9E+02 0.0085 22.1 8.1 63 14-86 24-86 (268)
264 cd01467 vWA_BatA_type VWA BatA 25.3 2.6E+02 0.0056 22.3 6.2 35 55-89 102-143 (180)
265 cd05292 LDH_2 A subgroup of L- 25.0 1.3E+02 0.0028 27.3 4.8 59 32-90 85-144 (308)
266 COG3693 XynA Beta-1,4-xylanase 24.7 51 0.0011 31.0 2.1 24 70-93 209-232 (345)
267 cd06271 PBP1_AglR_RafR_like Li 24.7 3.7E+02 0.008 22.2 7.3 64 12-85 26-89 (268)
268 TIGR00381 cdhD CO dehydrogenas 24.6 3.6E+02 0.0078 26.0 7.7 31 16-46 150-187 (389)
269 TIGR02134 transald_staph trans 24.6 1.7E+02 0.0036 26.1 5.2 47 25-80 146-194 (236)
270 COG0069 GltB Glutamate synthas 24.5 78 0.0017 31.2 3.4 63 30-106 352-417 (485)
271 PRK03512 thiamine-phosphate py 24.4 1.6E+02 0.0034 25.4 5.0 37 56-94 157-193 (211)
272 PRK11815 tRNA-dihydrouridine s 24.4 2.8E+02 0.0061 25.5 7.0 33 57-92 205-238 (333)
273 PRK08599 coproporphyrinogen II 24.4 5.3E+02 0.011 23.8 8.8 67 22-88 52-120 (377)
274 PRK10703 DNA-binding transcrip 24.3 4.7E+02 0.01 23.0 8.2 31 57-87 117-148 (341)
275 KOG0677 Actin-related protein 24.3 45 0.00098 30.8 1.6 29 3-32 131-159 (389)
276 TIGR01302 IMP_dehydrog inosine 24.3 4.7E+02 0.01 25.2 8.7 40 57-98 327-367 (450)
277 cd06326 PBP1_STKc_like Type I 24.2 3.7E+02 0.0081 23.4 7.5 76 5-90 20-104 (336)
278 cd01462 VWA_YIEM_type VWA YIEM 24.0 3.3E+02 0.0072 21.1 6.5 34 56-89 95-135 (152)
279 PLN02602 lactate dehydrogenase 24.0 1.4E+02 0.003 28.0 4.8 37 54-90 145-182 (350)
280 PLN02446 (5-phosphoribosyl)-5- 23.9 3.3E+02 0.0072 24.6 7.1 74 6-93 43-117 (262)
281 PRK09249 coproporphyrinogen II 23.8 3.9E+02 0.0085 25.5 8.0 70 20-89 101-172 (453)
282 PRK09058 coproporphyrinogen II 23.8 3.2E+02 0.0069 26.2 7.4 66 22-89 115-184 (449)
283 PF03599 CdhD: CO dehydrogenas 23.7 94 0.002 29.8 3.7 47 19-76 69-116 (386)
284 PF04392 ABC_sub_bind: ABC tra 23.7 1.3E+02 0.0029 26.5 4.6 116 6-137 14-140 (294)
285 TIGR03572 WbuZ glycosyl amidat 23.6 2.4E+02 0.0051 24.1 6.0 72 7-93 31-109 (232)
286 TIGR00539 hemN_rel putative ox 23.6 5.5E+02 0.012 23.6 8.8 68 22-89 52-121 (360)
287 PF03932 CutC: CutC family; I 23.6 91 0.002 27.1 3.3 50 23-77 55-111 (201)
288 KOG2799 Succinyl-CoA synthetas 23.5 1.5E+02 0.0032 28.6 4.9 44 11-70 365-408 (434)
289 COG0393 Uncharacterized conser 23.3 79 0.0017 25.0 2.6 20 12-31 66-86 (108)
290 PLN02898 HMP-P kinase/thiamin- 23.2 89 0.0019 30.4 3.5 39 56-94 443-482 (502)
291 TIGR00259 thylakoid_BtpA membr 23.2 2E+02 0.0044 25.9 5.5 33 56-91 199-231 (257)
292 cd04732 HisA HisA. Phosphorib 23.1 2.2E+02 0.0047 24.1 5.6 72 7-93 30-108 (234)
293 KOG1663 O-methyltransferase [S 23.1 2.3E+02 0.0049 25.5 5.7 58 7-78 87-145 (237)
294 cd05291 HicDH_like L-2-hydroxy 22.9 1.3E+02 0.0028 27.2 4.3 56 35-90 89-145 (306)
295 PRK13685 hypothetical protein; 22.9 1.1E+02 0.0023 28.0 3.8 34 56-89 194-239 (326)
296 cd06270 PBP1_GalS_like Ligand 22.7 4.5E+02 0.0099 21.9 7.9 64 12-86 22-86 (268)
297 PRK08649 inosine 5-monophospha 22.5 3.8E+02 0.0082 25.3 7.5 68 7-88 142-218 (368)
298 TIGR01756 LDH_protist lactate 22.5 1.4E+02 0.0031 27.4 4.6 60 34-93 80-141 (313)
299 cd01465 vWA_subgroup VWA subgr 22.4 2.6E+02 0.0057 21.8 5.7 32 57-88 98-139 (170)
300 PRK08318 dihydropyrimidine deh 22.4 3.3E+02 0.0071 25.7 7.1 35 56-92 252-287 (420)
301 PF15643 Tox-PL-2: Papain fold 22.4 1.1E+02 0.0024 23.9 3.2 27 5-31 22-48 (100)
302 cd06578 HemD Uroporphyrinogen- 22.4 2.9E+02 0.0063 22.7 6.2 28 12-40 89-116 (239)
303 COG4937 Predicted regulatory d 22.3 83 0.0018 26.4 2.6 47 19-75 58-104 (171)
304 PF02581 TMP-TENI: Thiamine mo 22.1 43 0.00094 27.7 1.0 28 57-86 149-176 (180)
305 cd06305 PBP1_methylthioribose_ 22.1 4.6E+02 0.01 21.8 7.4 64 12-86 22-88 (273)
306 cd03466 Nitrogenase_NifN_2 Nit 22.0 5.2E+02 0.011 24.6 8.4 62 7-79 311-372 (429)
307 cd00758 MoCF_BD MoCF_BD: molyb 22.0 3.4E+02 0.0074 21.2 6.1 10 125-134 96-105 (133)
308 TIGR03151 enACPred_II putative 21.8 1.1E+02 0.0024 27.9 3.7 38 57-96 161-199 (307)
309 cd00553 NAD_synthase NAD+ synt 21.7 1.4E+02 0.0031 26.0 4.3 48 36-90 11-61 (248)
310 TIGR00343 pyridoxal 5'-phospha 21.6 2.1E+02 0.0045 26.4 5.3 35 58-94 198-235 (287)
311 cd06312 PBP1_ABC_sugar_binding 21.5 4.1E+02 0.009 22.3 7.1 64 13-85 24-89 (271)
312 CHL00024 psbI photosystem II p 21.5 54 0.0012 20.9 1.1 13 116-130 24-36 (36)
313 cd01476 VWA_integrin_invertebr 21.5 3.7E+02 0.0079 21.0 6.3 36 54-89 102-142 (163)
314 PLN00112 malate dehydrogenase 21.5 2.1E+02 0.0046 27.8 5.7 60 33-92 195-256 (444)
315 PRK08673 3-deoxy-7-phosphohept 21.5 2.6E+02 0.0057 26.1 6.1 75 6-94 107-190 (335)
316 cd06320 PBP1_allose_binding Pe 21.4 3.9E+02 0.0085 22.4 6.9 65 12-85 22-89 (275)
317 PF08134 cIII: cIII protein fa 21.2 1.2E+02 0.0026 19.9 2.7 18 33-50 20-37 (44)
318 COG2390 DeoR Transcriptional r 21.2 2E+02 0.0043 26.8 5.2 63 22-94 55-130 (321)
319 cd06285 PBP1_LacI_like_7 Ligan 21.2 4.9E+02 0.011 21.7 8.1 66 12-87 22-87 (265)
320 TIGR03682 arCOG04112 arCOG0411 21.1 1.5E+02 0.0032 27.3 4.4 49 22-84 214-266 (308)
321 PF10649 DUF2478: Protein of u 21.1 69 0.0015 26.9 2.0 28 18-45 65-92 (159)
322 PRK13397 3-deoxy-7-phosphohept 21.0 3.2E+02 0.007 24.5 6.4 77 6-94 29-112 (250)
323 COG0367 AsnB Asparagine syntha 21.0 2.6E+02 0.0056 27.8 6.3 61 30-92 206-270 (542)
324 cd06274 PBP1_FruR Ligand bindi 20.9 4.9E+02 0.011 21.7 7.3 65 13-87 23-87 (264)
325 KOG1643 Triosephosphate isomer 20.9 1.2E+02 0.0025 27.1 3.4 34 56-90 201-234 (247)
326 cd06267 PBP1_LacI_sugar_bindin 20.6 4.7E+02 0.01 21.2 7.2 63 15-87 25-87 (264)
327 cd02067 B12-binding B12 bindin 20.6 3.8E+02 0.0082 20.1 7.7 11 12-22 20-30 (119)
328 cd02929 TMADH_HD_FMN Trimethyl 20.5 1.3E+02 0.0028 28.2 3.9 36 57-93 289-325 (370)
329 TIGR02666 moaA molybdenum cofa 20.1 5.8E+02 0.013 23.0 8.0 62 11-76 104-176 (334)
No 1
>PLN02885 nicotinate phosphoribosyltransferase
Probab=100.00 E-value=3.2e-67 Score=505.35 Aligned_cols=229 Identities=87% Similarity=1.415 Sum_probs=221.6
Q ss_pred CcCchHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026913 1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (231)
Q Consensus 1 l~sGv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~ 80 (231)
++||++|||+|+++|+++|+++.|||+|||||++||+++|++||+++|+|+++|+++++|++||||||++|.+|.++|++
T Consensus 292 l~sg~~n~~~v~~~l~~~g~~~~GVRlDSGDl~~ls~~~r~~~~~~~~~l~~~g~~~~kIv~Sn~Lde~~i~~L~~~g~~ 371 (545)
T PLN02885 292 MKSGIPNFCAVALALNDLGYKAVGIRLDSGDLAYLSLEARKFFRTIEEELGVPGFGKMSITASNDINEETLDALNKQGHE 371 (545)
T ss_pred HHHHHHHHHHHHHHHHhcCcccCeeEECCCChHHHHHHHHHHHHHHHHhcCCCCCCCeEEEEeCCCCHHHHHHHHHcCCC
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccEEeeCCcccccCCCCccceEEEEeEECCccccccCCCCCCCCCCccceeEeecCCCCceeeeeeecCCCCCCCCCcce
Q 026913 81 VDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERI 160 (231)
Q Consensus 81 id~fGvGT~l~~~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~v~R~~~~~g~~~~D~i~l~~e~~~~~~~~~ 160 (231)
||+|||||+|+||.++|+++||||||++||+|++|+|++++|.|+||+|+|||+||++|++.+|+|++.+|++|..++++
T Consensus 372 id~fGVGT~LvT~~~~p~l~~VyKLVe~~g~p~~KlS~~~~K~t~PG~K~vyR~~~~~g~~~~D~i~l~~e~~~~~~~~~ 451 (545)
T PLN02885 372 IDAFGIGTHLVTCYAQPALGCVYKLVEINGQPRIKLSEDVEKVTIPCKKRCYRLYGKEGYPLVDLMTGENEPPPKVGERI 451 (545)
T ss_pred ccEEecCCccccCCCCCCCceEEEEEEECCeeeeEecCCCCCccCCcceEEEEEEcCCCCEEEEEEecCCCCCCCCCCce
Confidence 99999999999999999999999999999999999999999999999999999998779999999999999767778899
Q ss_pred eecCCCCcccceeecCccccccceeeeeCCC--CeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCCCCcCC
Q 026913 161 LCRHPFNESKRAYVVPQKVEELLKCYWPGSS--DKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVL 231 (231)
Q Consensus 161 ~~~~p~~~~~~~~~~~~~~~~LL~~v~~~~~--G~~~~~~~sl~~iR~~~~~~l~~L~~~~~rl~~p~~Y~V~ 231 (231)
+|+||+++|+++.+.++.+++||+++| ++ |+++++.|+|++||+|++++|++||++++|+.||++|+|.
T Consensus 452 ~~~~p~~~~~~~~~~~~~~~~Ll~~~~--~~g~g~~~~~~~~l~~~r~~~~~~l~~l~~~~~r~~~p~~y~V~ 522 (545)
T PLN02885 452 LCRHPFNESKRAYVVPQRVEELLKCYW--DGSSGKPREELPSLKEIRERCMKQLERMRPDHMRRLNPTPYKVS 522 (545)
T ss_pred EEeCCccchheeeeccccHHhhhHHHe--ECCCCcCcCCCCCHHHHHHHHHHHHhhCCHHHHhccCCccceec
Confidence 999999999999999999999999999 66 8888999999999999999999999999999999999984
No 2
>PRK09243 nicotinate phosphoribosyltransferase; Validated
Probab=100.00 E-value=2.1e-57 Score=431.95 Aligned_cols=217 Identities=41% Similarity=0.591 Sum_probs=206.9
Q ss_pred cCchHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcc
Q 026913 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (231)
Q Consensus 2 ~sGv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~i 81 (231)
+|||+|||+++++|.+ |..+.|||+|||||+++++++|++||++ |++++||++||||||++|.+|..+|+++
T Consensus 239 ~~~i~~~~~~~~~l~~-~~~~~gVRlDSGDl~~l~~~vr~~ld~~-------G~~~~kIi~S~gLde~~i~~l~~~g~~i 310 (464)
T PRK09243 239 KSGVPNAIKVAKELGD-GIELGGVRIDSGDLAYLSKKVRKMLDEA-------GFTDTKIVASNDLDEYTIASLKLQGAPI 310 (464)
T ss_pred HhHHHHHHHHHHHhhc-cccCceeeCCCCCHHHHHHHHHHHHHHC-------CCCCcEEEEeCCCCHHHHHHHHhCCCCc
Confidence 4799999999999877 7889999999999999999999999998 8999999999999999999999999999
Q ss_pred cEEeeCCcccccCCCCccceEEEEeEECCc----cccccCCCCCCCCCCccceeEeecCCCCceeeeeeecCCCCCCCCC
Q 026913 82 DAFGIGTYLVTCYAQAALGCVFKLVEINKQ----PRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVG 157 (231)
Q Consensus 82 d~fGvGT~l~~~~~~p~l~~vyKlv~~~g~----p~~K~S~~~~K~t~PG~K~v~R~~~~~g~~~~D~i~l~~e~~~~~~ 157 (231)
|+|||||+|+|+.++|++++|||||+++|. |++|+|++++|.|+||+|+|||+|+++|++.+|+|++.+|+ + +
T Consensus 311 d~fGvGt~L~~~~~~~~l~~v~Klv~~~g~g~w~p~~K~s~~~~K~t~pG~k~v~R~~~~~~~~~~d~i~~~~e~-~--~ 387 (464)
T PRK09243 311 DGFGVGTKLVTGSDAPALGGVYKLVAIEGEGGMIPKIKLSNSPEKVTTPGRKQVYRIYDKGGKAEADVITLADEE-E--E 387 (464)
T ss_pred eEEEcCccccCCCCCCccceEEEEeEecCCCCccceeecccCCCCcCCCcceEEEEEEcCCCCcceEEEeccCCC-c--c
Confidence 999999999999999999999999999985 99999999999999999999999987789999999999985 3 6
Q ss_pred cceeecCCCCcccceeecCccccccceeeeeCCCCeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCCCCcCC
Q 026913 158 ERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVL 231 (231)
Q Consensus 158 ~~~~~~~p~~~~~~~~~~~~~~~~LL~~v~~~~~G~~~~~~~sl~~iR~~~~~~l~~L~~~~~rl~~p~~Y~V~ 231 (231)
+++.|+||.++|++..+.++.+++||+|+| ++|+++.+.||+++||+|++++|++||++++||.||++|+|.
T Consensus 388 ~~~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~G~~~~~~~~l~~~r~~~~~~l~~l~~~~~~l~~p~~y~v~ 459 (464)
T PRK09243 388 EPLKMFHPVHTYKSKTVKNFDAEPLLVPVM--ENGKRVYELPSLEEIRAYAAAQLASLPEEYKRLLNPHAYPVD 459 (464)
T ss_pred ccceeecccchhhhhcccccchhhhhHHHh--cCCEEcCCCCCHHHHHHHHHHHHHhCCHHHhcccCCCceeEE
Confidence 778899999999999999989999999999 999999999999999999999999999999999999999983
No 3
>TIGR01513 NAPRTase_put putative nicotinate phosphoribosyltransferase. Most members of this family are Gram-positive bacteria. An additional set of mutually closely related archaeal sequences score between the trusted and noise cutoffs.
Probab=100.00 E-value=4.7e-56 Score=420.29 Aligned_cols=209 Identities=41% Similarity=0.638 Sum_probs=195.0
Q ss_pred cCchHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcc
Q 026913 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (231)
Q Consensus 2 ~sGv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~i 81 (231)
+||++||++++++|++.| .+.|||+|||||.++++++|++||++ |++++||++||||||++|.+|.++|+++
T Consensus 230 ~sg~~~~~~~~~~l~~~~-~~~gVR~DSGD~~~l~~~vr~~ld~~-------G~~~vkIi~S~gLde~~i~~l~~~g~~~ 301 (443)
T TIGR01513 230 RSGLPNAIAVAKELGEQG-KVVGVRIDSGDLLYLSKQARKQLDAA-------GLTQVKIVVSNDLDENSIAALKAEGAPI 301 (443)
T ss_pred hhhHHHHHHHHHHHhhhc-CceeEecCCCCHHHHHHHHHHHHHHc-------CCCCcEEEEeCCCCHHHHHHHHHCCCce
Confidence 589999999999997766 67899999999999999999999998 8999999999999999999999999999
Q ss_pred cEEeeCCcccccCCCCccceEEEEeEECCccccccCCCCCCCCCCccceeEeecCCCCceeeeeeecCCCCCCCCCccee
Q 026913 82 DAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERIL 161 (231)
Q Consensus 82 d~fGvGT~l~~~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~v~R~~~~~g~~~~D~i~l~~e~~~~~~~~~~ 161 (231)
|+|||||+|+|+.++|++++|||||++||+|++|+|++++|.|+||+|+|||+|+.+|.+..|+|++.+|++ ..+++..
T Consensus 302 d~fGvGt~L~t~~~~~~l~~v~Klv~~~G~pv~K~sd~~~K~t~pG~k~v~R~~~~~g~~~~d~i~~~~e~~-~~~~~~~ 380 (443)
T TIGR01513 302 DVYGVGTSLVTASDAPALGGVYKLVAYEGRPVMKLSENPEKSTLPGRKQVFRLYDATGKFLGDELTLADEPI-EDLNQEK 380 (443)
T ss_pred eEEecCcceeecCCCCccceEEEEEeECCeeeEecCCCCcCccCCcceEEEEEeCCCCCeeeEEEEecCCCC-cccccee
Confidence 999999999999999999999999999999999999999999999999999999767899999999999864 4456677
Q ss_pred ecCCCCcccceeecCccccccceeeeeCCCCeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCCCCcCC
Q 026913 162 CRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVL 231 (231)
Q Consensus 162 ~~~p~~~~~~~~~~~~~~~~LL~~v~~~~~G~~~~~~~sl~~iR~~~~~~l~~L~~~~~rl~~p~~Y~V~ 231 (231)
|+||. ...++||++|| ++|+++.+.+|+++||+|++++|++||++++|+.||++|+|.
T Consensus 381 ~~~~~----------~~~~~ll~~v~--~~G~~~~~~~~l~eir~~~~~~l~~l~~~~~rl~~p~~y~v~ 438 (443)
T TIGR01513 381 CTPVF----------APVEPLLRLVM--KNGQRVRPLPSLAEIRARAREQLSKLPPEYLRLLNPHVYPVS 438 (443)
T ss_pred eecCC----------cchhcchhhee--ECCEEeCCCCCHHHHHHHHHHHHHhCCHHHhcccCCccceee
Confidence 88875 24589999999 999999998999999999999999999999999999999984
No 4
>PRK12484 nicotinate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=3.3e-52 Score=394.24 Aligned_cols=193 Identities=35% Similarity=0.519 Sum_probs=179.8
Q ss_pred chHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccE
Q 026913 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDA 83 (231)
Q Consensus 4 Gv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~ 83 (231)
||+|||+|+++|.+ |.++.|||+|||||+++++++|++||++ |+++++|++||||||++|.+|.++|+++|+
T Consensus 234 ~i~~ai~v~~~l~~-~~~~~gVRlDSGDl~~l~~~~r~~ld~~-------G~~~~kIi~S~gLde~~i~~l~~~g~~id~ 305 (443)
T PRK12484 234 GVRNAIEVAKELGN-RFDPRGVRLDSGDLAELSKATRAILDAA-------GLEQVKIVASGGLDEYRIAALLAAGAPIDG 305 (443)
T ss_pred HHHHHHHHHHHhhc-ccCcceeeCCCCCHHHHHHHHHHHHHHC-------CCCCcEEEEeCCCCHHHHHHHHHCCCcCeE
Confidence 89999999999866 6788999999999999999999999998 999999999999999999999999999999
Q ss_pred EeeCCcccccCCCCccceEEEEeEECCccccccCCCCCCCCCCccceeEeecCCCCceeeeeeecCCCCCCCCCcceeec
Q 026913 84 FGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERILCR 163 (231)
Q Consensus 84 fGvGT~l~~~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~v~R~~~~~g~~~~D~i~l~~e~~~~~~~~~~~~ 163 (231)
|||||+|+|+.++|+++||||||+++|.|++|+|+ +|.|+||+|+|||+|+. +.+.+|+|++.+|+++. +
T Consensus 306 fGvGt~L~~~~~~p~l~~v~Klv~~~g~pv~K~s~--~K~t~pG~k~v~R~~~~-~~~~~d~i~~~~e~~~~-~------ 375 (443)
T PRK12484 306 FGVGTRLGVAADAPVLDSAYKLVAYEGRGVTKLSS--GKVTYPGRKQVFRLYEH-GTACGDVIGLHTENIPD-G------ 375 (443)
T ss_pred EeeCcccccCCCCCccceEEEEEEecCCCeEEeCC--CCCCCCCceEEEEEcCC-CCceeEEEEecCCCCCC-c------
Confidence 99999999999999999999999999999999986 89999999999999974 44788999999975332 1
Q ss_pred CCCCcccceeecCccccccceeeeeCCCCeeecCCCCHHHHHHHHHHHHhcCChhhhhccCCCCCcCC
Q 026913 164 HPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQLEQMRPDHMRRLNPTPYKVL 231 (231)
Q Consensus 164 ~p~~~~~~~~~~~~~~~~LL~~v~~~~~G~~~~~~~sl~~iR~~~~~~l~~L~~~~~rl~~p~~Y~V~ 231 (231)
.++||+||| ++|+++.+.||+++||+|++++|++||++++||.||++|+|.
T Consensus 376 ---------------~~~ll~~v~--~~G~~~~~~~~l~eir~~~~~~l~~l~~~~~~l~~p~~y~v~ 426 (443)
T PRK12484 376 ---------------REPLLVPVM--TNGRRIQHAPTLDGARDWCEAQLAALPPEARRLVDPVAVSVT 426 (443)
T ss_pred ---------------ccchhhhhe--ECCEEeCCCCCHHHHHHHHHHHHHhCCHHHHhccCCccceee
Confidence 258999999 999999988999999999999999999999999999999983
No 5
>PRK09198 putative nicotinate phosphoribosyltransferase; Provisional
Probab=100.00 E-value=4.8e-36 Score=284.58 Aligned_cols=173 Identities=19% Similarity=0.268 Sum_probs=147.1
Q ss_pred chHHHHHHHHHHHh----cCCCccEEeeCCCChHHHHHHHHHHHHHH-hHhhCCCCC----CCeEEEEeCCCCHHHHHH-
Q 026913 4 GVPNFCAVALALND----LGYKAVGIRLDSGDLAYLSCEARKFFRTI-EKEFGVPDF----EKMSITASNDLNEETLDA- 73 (231)
Q Consensus 4 Gv~naI~va~~l~~----~g~~~~gVRlDSGDl~~ls~~~r~~ld~~-~~~l~~~g~----~~v~I~~S~~Lde~~i~~- 73 (231)
||+|+ ++.+|++ .|.++ |||+|||||+++++++|++||++ |.++|.+|+ ++|+|++||||||++|.+
T Consensus 270 ~i~~i--~~~~L~~~i~~~~~~l-~VR~DSGD~~~i~~~vr~~L~e~fG~t~n~kGykvL~~~v~Ii~s~glde~~i~~i 346 (463)
T PRK09198 270 AITEP--WGGELKDEILARGGTL-VIRPDSGDPVTIICGTLELLDEIFGGTVNSKGYKVLNPHVGVIQGDGITLDSIEAI 346 (463)
T ss_pred HHHHH--HHHHHhhhhhccCCcE-EEECCCCCHHHHHHHHHHHHHHhhCcccccCcccccCCCeEEEEeCCCCHHHHHHH
Confidence 67774 4455654 67788 99999999999999999999998 999999996 399999999999999999
Q ss_pred ---HHhcCCccc--EEeeCCcccccCCCCccceEEEEeEE--CCc--cccccC-CCCCCCCCCccceeEeecCCCCceee
Q 026913 74 ---LNKQGHEVD--AFGIGTYLVTCYAQAALGCVFKLVEI--NKQ--PRIKLS-EDVSKVSIPCKKRSYRLYGKEGYPLV 143 (231)
Q Consensus 74 ---l~~~g~~id--~fGvGT~l~~~~~~p~l~~vyKlv~~--~g~--p~~K~S-~~~~K~t~PG~K~v~R~~~~~g~~~~ 143 (231)
|..+|+++| +|||||+|+|+.++|+++||||||++ ||+ |++|-+ ++.+|.|.||+|+|||. +|.+
T Consensus 347 l~~l~~~G~~~dni~FGvGt~l~~~~~r~t~~~a~Kl~~~~~~G~~~~v~K~P~t~~gK~S~~G~k~v~r~---~~~~-- 421 (463)
T PRK09198 347 LEALKAKGFAAENIVFGMGGALLQYVNRDTQGFAMKASAIEVNGEWRDIFKDPITDQGKKSKKGRLKLIKD---NGEY-- 421 (463)
T ss_pred HHHHHhCCCccccceEecCcccccCCCCCccCceEEEEEEeeCCccceeeccCcCCCCCcCccceeEEEEc---CCcc--
Confidence 667899998 99999999999999999999999965 664 999976 66799999999999997 3433
Q ss_pred eeeecCCCCCCCCCcceeecCCCCcccceeecCccccccceeeeeCCCCeeecCCCCHHHHHHHHHHH
Q 026913 144 DIMTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQ 211 (231)
Q Consensus 144 D~i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~LL~~v~~~~~G~~~~~~~sl~~iR~~~~~~ 211 (231)
|++.+.++.. . .++||++|| +||+++.+ +++++||+|+.+.
T Consensus 422 ~~v~~~~~~~--~----------------------~~~lL~~v~--~~G~l~~~-~~l~eiR~r~~~~ 462 (463)
T PRK09198 422 RTVDLDEAGD--E----------------------NDDLLQTVF--ENGKLLVE-YSLAEIRARLHAA 462 (463)
T ss_pred eEEeccccCC--C----------------------ccchhhhhe--eCCEECCC-CCHHHHHHHHhhc
Confidence 6776665431 1 157999999 99999985 7899999999764
No 6
>PHA02594 nadV nicotinamide phosphoribosyl transferase; Provisional
Probab=100.00 E-value=1.2e-35 Score=281.90 Aligned_cols=176 Identities=23% Similarity=0.286 Sum_probs=148.9
Q ss_pred chHHHH-HHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHH-hHhhCCCCC----CCeEEEEeCCCCHHHHHHHH--
Q 026913 4 GVPNFC-AVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTI-EKEFGVPDF----EKMSITASNDLNEETLDALN-- 75 (231)
Q Consensus 4 Gv~naI-~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~-~~~l~~~g~----~~v~I~~S~~Lde~~i~~l~-- 75 (231)
||+|+| +++.++.+.|.++ |||+|||||++++++++++|.+. |-++|.+|+ ++++||+||||||++|++|+
T Consensus 276 ~v~~~i~~l~~~i~~~~~~l-~IR~DSGD~~~l~~~~~~~L~~~FG~~ln~~G~kvL~~~v~Ii~gd~ide~~i~~il~~ 354 (470)
T PHA02594 276 AVTEILPELKDEIMARGGKL-VIRPDSGDPVDIICGALETLGEIFGGTVNSKGYKVLDEHVRLIQGDGITLERINRILTR 354 (470)
T ss_pred HHHHHHHHHHHHHHhCCCcE-EEeCCCCCHHHHHHHHHHHHHHhcCCcccCccccccCCCeEEEEcCCCCHHHHHHHHHH
Confidence 899999 9999988888887 99999999999999999999766 777888899 99999999999999999955
Q ss_pred --hcC--CcccEEeeCCcccccCCCCccceEEEEeEE--CCc--cccccC-CCCCCCCCCccceeEeecCCCCce-eeee
Q 026913 76 --KQG--HEVDAFGIGTYLVTCYAQAALGCVFKLVEI--NKQ--PRIKLS-EDVSKVSIPCKKRSYRLYGKEGYP-LVDI 145 (231)
Q Consensus 76 --~~g--~~id~fGvGT~l~~~~~~p~l~~vyKlv~~--~g~--p~~K~S-~~~~K~t~PG~K~v~R~~~~~g~~-~~D~ 145 (231)
++| +++++|||||+|+|+.++|+++|||||+++ +|+ |++|.+ ++++|.|.||+|+ |.++ +|.+ ..|.
T Consensus 355 L~~~G~~a~n~~fGvGt~l~q~~~rdt~g~ayKl~~~~~~G~~~~~~K~Pktd~gK~S~~Gr~~--~~~~-~g~~~~~~~ 431 (470)
T PHA02594 355 MKENGFASENVAFGMGGGLLQMVTRDTFKFAMKATAIKINGKWKGVFKNPKTDEGKKSKKGRLA--RVKD-GGSFKTVDG 431 (470)
T ss_pred HHHCCCCCCcceEecCccceecCCCcccCceEEEEEEecCCceeeeeccCcCCCCCccccceeE--EEEc-CCceeEeee
Confidence 689 577799999999999999999999999987 575 669876 6789999999999 4444 5655 4455
Q ss_pred eecCCCCCCCCCcceeecCCCCcccceeecCccccccceeeeeCCCCeeecCCCCHHHHHHHHHHH
Q 026913 146 MTGENEPPPKVGERILCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCIKQ 211 (231)
Q Consensus 146 i~l~~e~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~LL~~v~~~~~G~~~~~~~sl~~iR~~~~~~ 211 (231)
+ ..|.++ + .++||++|| +||+++.+ +||++||+|++++
T Consensus 432 ~--~~e~~~--~---------------------~~~lL~~v~--~~G~~~~~-~sl~eiR~r~~~~ 469 (470)
T PHA02594 432 L--EEQSEA--D---------------------LNDALVTYF--DDGKLVRY-QSLAEIRERSDIQ 469 (470)
T ss_pred c--cccccc--c---------------------ccchhheee--ECCEECCC-CCHHHHHHHHHhc
Confidence 4 222111 1 147999999 99999987 8999999999875
No 7
>COG1488 PncB Nicotinic acid phosphoribosyltransferase [Coenzyme metabolism]
Probab=100.00 E-value=5e-34 Score=267.84 Aligned_cols=159 Identities=34% Similarity=0.444 Sum_probs=136.0
Q ss_pred cCchHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCc
Q 026913 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHE 80 (231)
Q Consensus 2 ~sGv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S-~~Lde~~i~~l~~~g~~ 80 (231)
.+|+.|++.++.++.. ..+.|||+|||||.++++++|++||+. |+++++||+| |++||..|+.|+.+|++
T Consensus 246 ~~~~~~~~~~~~~~~~--~~~~GVR~DSGd~~~~~~kvr~~ld~~-------G~~~~~Ii~Sdg~lde~~i~~l~~~g~~ 316 (405)
T COG1488 246 DDAFLNAIKVAKALGD--KRLDGVRLDSGDPRELSEKVRAHLDKL-------GYDPVKIIVSDGLLDEKIIALLRAFGAR 316 (405)
T ss_pred hHHHHHhHHHHHhccc--ccceEEECCCCCHHHHHHHHHHHHHHc-------CCCceEEEEeCCcchHHHHHHHHHhCCC
Confidence 3589999999988743 478999999999999999999999998 9999999999 99999999999999999
Q ss_pred ccEEeeCCcccccCCCCccceEEEEeEECCccccccCCCCCCCCCCccceeEeecCCCCceeeeeeecCCCCCCCCCcce
Q 026913 81 VDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERI 160 (231)
Q Consensus 81 id~fGvGT~l~~~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~v~R~~~~~g~~~~D~i~l~~e~~~~~~~~~ 160 (231)
+|+|||||+|+|..++|++++|||||+++|+|++|+|++ ||.|+++|.++. .. +.....++. .
T Consensus 317 ~d~FGvGT~L~~~~~~~~~~~v~Klvev~g~p~~Kis~~------Pgkk~~~r~~~~--~~--~~~~~~~~~-~------ 379 (405)
T COG1488 317 NDAFGVGTNLTTAKPRPPLDIVYKLVEVNGKPVAKISKN------PGKKQVYRSAFV--RE--LLVVFGDEI-T------ 379 (405)
T ss_pred ccEeccchhhccCCCCCcceeEEEEEEECCccceeecCC------Cccceeecchhh--hh--hheeccccc-c------
Confidence 999999999999999999999999999999999999873 899999998741 11 011111110 0
Q ss_pred eecCCCCcccceeecCccccccceeeeeCCCCeeecCCCCHHHHHHHHH
Q 026913 161 LCRHPFNESKRAYVVPQKVEELLKCYWPGSSDKRREDLPTLKDTRERCI 209 (231)
Q Consensus 161 ~~~~p~~~~~~~~~~~~~~~~LL~~v~~~~~G~~~~~~~sl~~iR~~~~ 209 (231)
.++||++|| ++| ++++ +|++||+|++
T Consensus 380 ------------------~~~l~~~~~--~~G-~~~~--~l~~ir~~~~ 405 (405)
T COG1488 380 ------------------YEPLLVKVF--ENG-LLYD--SLDEIRERAL 405 (405)
T ss_pred ------------------chhHHHHHH--hCC-eecC--CHHHHHHhhC
Confidence 178999999 999 8887 9999999973
No 8
>KOG2511 consensus Nicotinic acid phosphoribosyltransferase [Coenzyme transport and metabolism]
Probab=99.98 E-value=6e-33 Score=251.56 Aligned_cols=167 Identities=64% Similarity=0.949 Sum_probs=153.0
Q ss_pred CcCchHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026913 1 MRSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (231)
Q Consensus 1 l~sGv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~ 80 (231)
+.||++|+++|+.+|... |||+|||||+|+|+++|+++-.+...+. +.+..+-+.+||+++|++|..+.+||++
T Consensus 251 ~~~~~~nf~Av~lal~~~-----GvR~DSGdl~~~skkvr~~y~~v~~~~K-~~~~~m~~~a~N~~ne~ti~~lnkq~~e 324 (420)
T KOG2511|consen 251 FLKSFPNFCAVALALNDL-----GVRQDSGDLAEYSKKVRKHYCDVERDPK-PSKGIMYSDALNVLNEITIDALNKQGGE 324 (420)
T ss_pred HHhcCCccchhhhhhhhc-----ceeccCCCHHHHHHHHHHHHHHhhccCC-CcceEEEEecccchhHHHHHHHHhcCCc
Confidence 368999999999998654 6999999999999999999999855444 5667788899999999999999999999
Q ss_pred ccEEeeCCcccccCCCCccceEEEEeEECCccccccCCCCCCCCCCccceeEeecCCCCceeeeeeecCCCCCCCCCcce
Q 026913 81 VDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGKEGYPLVDIMTGENEPPPKVGERI 160 (231)
Q Consensus 81 id~fGvGT~l~~~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~v~R~~~~~g~~~~D~i~l~~e~~~~~~~~~ 160 (231)
+++|||||+|+|| .|+ +.+| ||+|+|+.|.|+||.|.+||++.++|.+..|++.+++|++|..++.+
T Consensus 325 ~~aFGIGTnl~t~-~q~-----------~sqP-iKLseDvtkvSiP~~K~~~RLfg~eG~plvdi~~~~~ep~p~~gq~l 391 (420)
T KOG2511|consen 325 VDAFGIGTNLTTD-FQK-----------NSQP-IKLSEDVTKVSIPGNKIVIRLFGKEGYPLVDISDLENEPPPDPGQVL 391 (420)
T ss_pred eeeeccccccccc-ccc-----------ccCC-cccccccceeccccchhheehhccCCchhhhHhhccCCCCCCCCceE
Confidence 9999999999998 455 6789 99999999999999999999999999999999999999999999999
Q ss_pred eecCCCCcccceeecCccccccceeee
Q 026913 161 LCRHPFNESKRAYVVPQKVEELLKCYW 187 (231)
Q Consensus 161 ~~~~p~~~~~~~~~~~~~~~~LL~~v~ 187 (231)
.|.||+. .++.++.|..+++|++.+|
T Consensus 392 ~~khp~~-~~~~~vip~~ve~llk~~w 417 (420)
T KOG2511|consen 392 RVKHPLN-SKRAYVIPQRVEELLKCYW 417 (420)
T ss_pred Eeecccc-ccccccchhhhHHHHHHHh
Confidence 9999998 7778888999999999998
No 9
>cd01401 PncB_like Nicotinate phosphoribosyltransferase (NAPRTase), related to PncB. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria, archea and funghi.
Probab=99.97 E-value=2.5e-31 Score=247.31 Aligned_cols=112 Identities=29% Similarity=0.336 Sum_probs=103.2
Q ss_pred chHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCC-CCeE-EEEeCCCCHHHHHHHHh--cCC
Q 026913 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF-EKMS-ITASNDLNEETLDALNK--QGH 79 (231)
Q Consensus 4 Gv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~-~~v~-I~~S~~Lde~~i~~l~~--~g~ 79 (231)
|.++|++++.++ .+..+.|||+|||||.+|++++|++|+++ |+ +++| |++||||||++|.+|.+ +|+
T Consensus 258 ~t~~f~~~~~~~--~~~~~~GvR~DSGD~~~~~~k~r~~~~~~-------Gi~p~~K~iv~Sd~Lde~~i~~L~~~~~g~ 328 (377)
T cd01401 258 GTDAFLRDFDLY--FAKLFDGVRHDSGDPFEWGEKAIAHYEKL-------GIDPKTKTLVFSDGLDVEKALELYEYFKGR 328 (377)
T ss_pred CCHHHHHHHHHH--hcccCCEEeeCCCCHHHHHHHHHHHHHHc-------CCCCCCcEEEEcCCCCHHHHHHHHHHHcCC
Confidence 458899888763 35668999999999999999999999998 85 7888 99999999999999998 899
Q ss_pred cccEEeeCCcccccCC----CCccceEEEEeEECCccccccCCCCCCCC
Q 026913 80 EVDAFGIGTYLVTCYA----QAALGCVFKLVEINKQPRIKLSEDVSKVS 124 (231)
Q Consensus 80 ~id~fGvGT~l~~~~~----~p~l~~vyKlv~~~g~p~~K~S~~~~K~t 124 (231)
++|+|||||+|+|+.+ +|++++|||||++||+|++|+|++++|.|
T Consensus 329 ~~~~FGIGT~L~~d~~~~~~~~pl~~V~KLv~~~g~P~~KlSd~~~K~t 377 (377)
T cd01401 329 IKVSFGIGTNLTNDFGNKEKSTPLNIVIKLVECNGRPVAKISDSPGKNM 377 (377)
T ss_pred cceeEecCcceecCCCcccCCCCcceEEEEEEECCcceeEecCCCccCC
Confidence 9999999999999988 89999999999999999999999999976
No 10
>PRK05321 nicotinate phosphoribosyltransferase; Provisional
Probab=99.97 E-value=2.3e-30 Score=242.42 Aligned_cols=118 Identities=25% Similarity=0.271 Sum_probs=103.6
Q ss_pred hHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCC--CCeEEEEeCCCCHHHHHHHHhc--CCc
Q 026913 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF--EKMSITASNDLNEETLDALNKQ--GHE 80 (231)
Q Consensus 5 v~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~--~~v~I~~S~~Lde~~i~~l~~~--g~~ 80 (231)
..+|++++.+. .+..+.|||+|||||++|++++|++||++ |+ .+++|++||||||++|.+|.++ |.+
T Consensus 262 t~~fl~~f~~~--~~~~~~GvRlDSGD~~~~~~k~~~~~~~~-------G~dp~~k~Iv~S~~Lde~~i~~L~~~~~~~i 332 (400)
T PRK05321 262 MDAFLRDFDLY--FAKLFDGLRHDSGDPIEWGEKAIAHYEKL-------GIDPRTKTLVFSDGLDFDKALELYRHFKGRI 332 (400)
T ss_pred cHHHHHHHHHH--hcccCCEEeeCCCCHHHHHHHHHHHHHHc-------CCCCCCeEEEEeCCCCHHHHHHHHHHhcCCC
Confidence 35677775332 46678999999999999999999999997 76 3568999999999999999987 556
Q ss_pred ccEEeeCCcccccC-CCCccceEEEEeEECCccccccCCCCCCCCCCcccee
Q 026913 81 VDAFGIGTYLVTCY-AQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRS 131 (231)
Q Consensus 81 id~fGvGT~l~~~~-~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~v 131 (231)
+|+|||||+|+|+. ++|++++|||||++||+|++|+|+++||.|.|...-+
T Consensus 333 ~~~fGIGT~Lt~~~~~~p~l~~V~KLv~~~g~P~~KlSd~~~K~t~p~~~~~ 384 (400)
T PRK05321 333 KLSFGIGTNLTNDFPGVKPLNIVIKLVECNGRPVAKLSDSPGKTMCDDPEFL 384 (400)
T ss_pred cceEecCcceecCCCCCCCcceEEEEEEECCeeeEEecCCCcccCCCCHHHH
Confidence 77999999999999 8999999999999999999999999999998876653
No 11
>TIGR01514 NAPRTase nicotinate phosphoribosyltransferase. This model represents nicotinate phosphoribosyltransferase, the first enzyme in the salvage pathway of NAD biosynthesis from nicontinate (niacin). Members are primary proteobacterial but also include yeasts and Methanosarcina acetivorans. A related family, apparently non-overlapping in species distribution, is TIGR01513. Members of that family differ in substantially in sequence and have a long C-terminal extension missing from this family, but are proposed also to act as nicotinate phosphoribosyltransferase (see model TIGR01513).
Probab=99.96 E-value=5.1e-30 Score=239.55 Aligned_cols=112 Identities=29% Similarity=0.312 Sum_probs=101.9
Q ss_pred chHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCC-CCCeE-EEEeCCCCHHHHHHHHh--cCC
Q 026913 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPD-FEKMS-ITASNDLNEETLDALNK--QGH 79 (231)
Q Consensus 4 Gv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g-~~~v~-I~~S~~Lde~~i~~l~~--~g~ 79 (231)
+.++|++++.++.+ ..+.|||+|||||.+|++++|++|+++ | .+++| |++||||||++|.+|.+ +|+
T Consensus 261 ~t~~f~~~~~~~~~--~~~~GvR~DSGD~~~~~~~~~~~~~~~-------gidp~~K~iv~Sd~Lde~~i~~L~~~~~g~ 331 (394)
T TIGR01514 261 TTDAFLRDFRPPFA--DAYDGLRHDSGDPVEWGDKAIAHYQKL-------GIDPKSKIIIFSDSLDVEKAIELSHYFKGR 331 (394)
T ss_pred CCHHHHHHHHHHhc--ccCCEEecCCCCHHHHHHHHHHHHHHc-------CCCCCCcEEEEcCCCCHHHHHHHHHHhcCC
Confidence 45789988755433 346899999999999999999999998 7 57888 67899999999999999 899
Q ss_pred cccEEeeCCcccccCC-CCccceEEEEeEECCccccccCCCCCCCC
Q 026913 80 EVDAFGIGTYLVTCYA-QAALGCVFKLVEINKQPRIKLSEDVSKVS 124 (231)
Q Consensus 80 ~id~fGvGT~l~~~~~-~p~l~~vyKlv~~~g~p~~K~S~~~~K~t 124 (231)
++|+|||||+|+|+.+ +|++++|||||+++|+|++|+|++++|+|
T Consensus 332 ~~d~FGVGT~l~~d~~~~~~l~~V~Klv~~~g~P~~KlSd~~~K~t 377 (394)
T TIGR01514 332 VKASFGIGTNLTNDFGKVEPLNIVIKLVECNGNPVAKLSDSPGKTM 377 (394)
T ss_pred CceeEecCcceecCCCCCCCcceEEEEEEECCccceEecCCCcccC
Confidence 9999999999999998 99999999999999999999999999988
No 12
>PF04095 NAPRTase: Nicotinate phosphoribosyltransferase (NAPRTase) family; InterPro: IPR015977 Nicotinate phosphoribosyltransferase (2.4.2.11 from EC) is the rate-limiting enzyme that catalyses the first reaction in the NAD salvage synthesis. This family also contains a number of closely related proteins for which a catalytic activity has not been experimentally demonstrated.; GO: 0004516 nicotinate phosphoribosyltransferase activity, 0009435 NAD biosynthetic process, 0005737 cytoplasm; PDB: 3OS4_B 1VLP_C 2F7F_A 1YIR_D 1YBE_B 2H3D_A 2H3B_B 2GVL_B 2IM5_B 2G96_B ....
Probab=99.96 E-value=6.2e-30 Score=225.91 Aligned_cols=130 Identities=41% Similarity=0.540 Sum_probs=109.6
Q ss_pred cCchHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCC---CCeEEEEeCCCCHHHHHHHHhcC
Q 026913 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF---EKMSITASNDLNEETLDALNKQG 78 (231)
Q Consensus 2 ~sGv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~---~~v~I~~S~~Lde~~i~~l~~~g 78 (231)
.++++++|.+...+++++ ++.|||+|||||.++++++|++|+++ .|++|+ ++++|++||||||++|.+|.+++
T Consensus 94 ~~~L~~~i~~~~~~~~~~-~~~gvR~DSGD~~~~~~~~r~~f~~~---~~~~g~kvl~~~~Ii~Sd~Lde~~i~~l~~~~ 169 (245)
T PF04095_consen 94 GIALKDAIGTRGFLKDFG-RFLGVRPDSGDPAELSEKLRKIFDEA---VGIKGYKVLPSKKIIASDGLDEEKIEELLEQG 169 (245)
T ss_dssp CEEEHHHHTHHHHHHCSS-HSEEEEE-SS-HHHHHHHHHHHHHHT---ETTTGGEE-TCSEEEEESS-SHHHHHHHHHHH
T ss_pred ccccchheeccchhcccc-cceeeecCCCChHHHHHHHHHHHHHH---hCCCCccccceEEEEEeCCCCHHHHHHHHHHh
Confidence 468999999998888877 67899999999999999999999997 466775 78899999999999999999998
Q ss_pred Cc---ccEEeeCCcccccCCC---------CccceEEEEeEECCccccccCCCCCCCC---CCccceeEeec
Q 026913 79 HE---VDAFGIGTYLVTCYAQ---------AALGCVFKLVEINKQPRIKLSEDVSKVS---IPCKKRSYRLY 135 (231)
Q Consensus 79 ~~---id~fGvGT~l~~~~~~---------p~l~~vyKlv~~~g~p~~K~S~~~~K~t---~PG~K~v~R~~ 135 (231)
++ +++|||||+|+|+.++ |+++++||+++++|+|++|+|++++|.| .++.+.+.|.|
T Consensus 170 ~~~g~~~~fGVGT~L~t~~~~~~~~~~~K~~~l~~v~Klv~~~~~P~~K~S~~~~K~t~~~~~~~~~~k~vf 241 (245)
T PF04095_consen 170 AEKGFNDSFGVGTNLVTDFDRPTLGFVYKLPALNIVGKLVEINGQPVIKLSDDSEKGTCGDPEGIKYLKRVF 241 (245)
T ss_dssp CCTTSEEEEEESHHHHSSCTTTTTTEEEEEEEEEEEEEEEEETTEETTBGGSSTTGSSGGGHHHHHHHHHHE
T ss_pred hcccceeEeecCchheeeCCCCccCceeccccceeCCeEEEeCCCCCccCCCCCCCCcCCCHHHHHHHHHHh
Confidence 88 9999999999999999 5566666667778899999999999999 23455555555
No 13
>cd01569 PBEF_like pre-B-cell colony-enhancing factor (PBEF)-like. The mammalian members of this group of nicotinate phosphoribosyltransferases (NAPRTases) were originally identified as genes whose expression is upregulated upon activation in lymphoid cells. In general, nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis.
Probab=99.94 E-value=4.5e-27 Score=220.01 Aligned_cols=122 Identities=20% Similarity=0.267 Sum_probs=110.0
Q ss_pred hHHHHHHHHH-HHhcCCCccEEeeCCCChHHHHHHHHHHHHHH-hHhhCCCCC----CCeEEEEeCCCCHHHHHH----H
Q 026913 5 VPNFCAVALA-LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTI-EKEFGVPDF----EKMSITASNDLNEETLDA----L 74 (231)
Q Consensus 5 v~naI~va~~-l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~-~~~l~~~g~----~~v~I~~S~~Lde~~i~~----l 74 (231)
++|++.++++ +.+.|.++ +||+|||||+++++++|++|+++ |-+.|.+|+ ++++||+||||||++|.+ |
T Consensus 269 ~~~~~~~lk~~i~~~g~~l-viRpDSGD~~~l~~~~~~~L~~~FG~~~n~kGykvl~~~v~Ii~gd~ide~~i~~Il~~L 347 (407)
T cd01569 269 LTLWGPRLKDEILARGGTL-VIRPDSGDPVDIICGVLEILGEIFGGTVNSKGYKVLNPHVRIIQGDGITLERIEEILERL 347 (407)
T ss_pred HHHHHHHHHHHHHhcCCcE-EEECCCCCHHHHHHHHHHHHHHHhCCcccCCcccccCCceEEEEcCCCCHHHHHHHHHHH
Confidence 8889988877 45678887 99999999999999999999998 888899996 699999999999999996 6
Q ss_pred HhcCCccc--EEeeCCcccccCCCCccceEEEEeEE--CCc--cccccC-CCCCCCCCCc
Q 026913 75 NKQGHEVD--AFGIGTYLVTCYAQAALGCVFKLVEI--NKQ--PRIKLS-EDVSKVSIPC 127 (231)
Q Consensus 75 ~~~g~~id--~fGvGT~l~~~~~~p~l~~vyKlv~~--~g~--p~~K~S-~~~~K~t~PG 127 (231)
.++|+++| +|||||+|+|+.++|+++|||||+++ ||+ |++|-+ +|++|.+..|
T Consensus 348 ~~~G~~~dNi~fGvGt~l~q~~~rdt~~~ayK~~~~~~~g~~~~v~K~P~td~~k~sk~g 407 (407)
T cd01569 348 KAKGFASENIVFGMGGGLLQKVTRDTQGFAMKASAIEINGKWRDVFKDPKTDPGKKSKKG 407 (407)
T ss_pred HHCCCccccceEecCccceecCCCcccCceeEEEEEecCCeeeeeeeCCCCCCccccCCC
Confidence 66999999 99999999999999999999999988 554 999999 7888887654
No 14
>cd01570 NAPRTase_A Nicotinate phosphoribosyltransferase (NAPRTase), subgroup A. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products. This subgroup is present in bacteria and eukaryota (except funghi).
Probab=99.94 E-value=1e-26 Score=213.16 Aligned_cols=98 Identities=60% Similarity=0.873 Sum_probs=94.7
Q ss_pred cCchHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcc
Q 026913 2 RSGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (231)
Q Consensus 2 ~sGv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~i 81 (231)
+||+++|++++++|.+.|.++.|||+|||||.++++++|++||+. |+++++|++||||||++|.+|.++|+++
T Consensus 230 ~~~~~~~l~~~~~l~~~~~~~~gvR~DSGd~~~~~~~~r~~l~~~-------G~~~~~Iv~Sdgld~~~i~~l~~~g~~~ 302 (327)
T cd01570 230 RSGLPNAIAVAKELGALGYRLVGVRIDSGDLAYLSKEARKMLDEA-------GLTKVKIVASNDLDEYTIAALNAQGAPI 302 (327)
T ss_pred hhhHHHHHHHHHHHHhhCCCceEEEeCCCCHHHHHHHHHHHHHHC-------CCCCcEEEEeCCCCHHHHHHHHHCCCee
Confidence 479999999999998889999999999999999999999999998 8899999999999999999999999999
Q ss_pred cEEeeCCcccccCCCCccceEEEEe
Q 026913 82 DAFGIGTYLVTCYAQAALGCVFKLV 106 (231)
Q Consensus 82 d~fGvGT~l~~~~~~p~l~~vyKlv 106 (231)
|+|||||+|+|+.++|++++|||||
T Consensus 303 d~fGvGt~L~~~~~~~~l~~v~Klv 327 (327)
T cd01570 303 DAFGVGTRLVTSQSQPALGGVYKLV 327 (327)
T ss_pred EEEecCccccCCCCCcccCeeEecC
Confidence 9999999999999999999999997
No 15
>PRK07188 nicotinate phosphoribosyltransferase; Provisional
Probab=99.91 E-value=2.8e-24 Score=198.78 Aligned_cols=102 Identities=23% Similarity=0.330 Sum_probs=94.2
Q ss_pred CchHHHHHHHHHHHhcCCCccEEeeCC-CCh---------------------HHHHHHHHHHHHHHhHhhCCCCCCCeEE
Q 026913 3 SGVPNFCAVALALNDLGYKAVGIRLDS-GDL---------------------AYLSCEARKFFRTIEKEFGVPDFEKMSI 60 (231)
Q Consensus 3 sGv~naI~va~~l~~~g~~~~gVRlDS-GDl---------------------~~ls~~~r~~ld~~~~~l~~~g~~~v~I 60 (231)
..+.+|++++++| |.++.|||||| ||+ .++++++|+.||++ |+++|+|
T Consensus 214 d~~~~al~~a~~~---g~~l~gVRlDs~gdl~DK~~~~~~~~~~~~~~~G~~~~l~~~vr~~Ld~~-------g~~~vkI 283 (352)
T PRK07188 214 DVITDSLKVAREF---GDKLKGVRVDTSKNMIDKYFIRHPEVLGTFDPRGVNPELIKALRKALDEN-------GGKHVKI 283 (352)
T ss_pred ccHHHHHHHHHHh---CCCccEEEeCCcchHhhhhcccccccccccccccccHHHHHHHHHHHhhC-------CCCCcEE
Confidence 4688899998776 88899999999 575 99999999999998 9999999
Q ss_pred EEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccceEEEEeEECCccccccCC
Q 026913 61 TASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSE 118 (231)
Q Consensus 61 ~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~vyKlv~~~g~p~~K~S~ 118 (231)
++||||||+.|++|.++|+|+|+|||||+|+++. .+|+.|+|++||+|++|+..
T Consensus 284 ~aSgGine~~I~~~~~~g~piD~~GVGt~l~~~~----~~~t~d~v~~~g~p~aK~Gr 337 (352)
T PRK07188 284 IVSSGFDAKKIREFEAQNVPVDIYGVGSSLLKIN----IGFTGDAVELNGKKEAKAGR 337 (352)
T ss_pred EEeCCCCHHHHHHHHHcCCCccEEecCcccccCc----ccceeeEEEECCEeecccCC
Confidence 9999999999999999999999999999999965 88999999999999999965
No 16
>cd01567 NAPRTase_PncB Nicotinate phosphoribosyltransferase (NAPRTase) family. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.85 E-value=4.7e-21 Score=176.32 Aligned_cols=93 Identities=40% Similarity=0.559 Sum_probs=86.9
Q ss_pred chHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCC--CCeEEEEeCCCC-HHHHHHHHhcCC-
Q 026913 4 GVPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF--EKMSITASNDLN-EETLDALNKQGH- 79 (231)
Q Consensus 4 Gv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~--~~v~I~~S~~Ld-e~~i~~l~~~g~- 79 (231)
|+.+++++++++.+ +..+.|||+|||||.++++++|++||++ |+ ++++|++||||| |++|+.++.+++
T Consensus 247 ~~~~~~~~~~~~~~-~~~~~gvR~DSGd~~~~~~~~~~~l~~~-------g~~~~~~~ii~sg~l~~~~~i~~~~~~~~~ 318 (343)
T cd01567 247 GFLNALKLAKALGA-GGGLLGVRLDSGDPVELIKKVRKHLDEL-------GIDLNKKKIIISGDLDTEEAIELLLEQGAS 318 (343)
T ss_pred HHHHHHHHHHhhcc-cCCCcEEECCCCCHHHHHHHHHHHHHHc-------CCCCCCeEEEEECCCCHHHHHHHHHHcCCC
Confidence 78899999988865 5678899999999999999999999998 77 899999999999 999999998887
Q ss_pred cccEEeeCCcccccCCCCccceEEE
Q 026913 80 EVDAFGIGTYLVTCYAQAALGCVFK 104 (231)
Q Consensus 80 ~id~fGvGT~l~~~~~~p~l~~vyK 104 (231)
++++|||||+|+|+.++|++++|||
T Consensus 319 ~~~~fGvGt~l~~~~~~~~l~~v~K 343 (343)
T cd01567 319 PNDAFGVGTSLTNDLGRPPLGFVYK 343 (343)
T ss_pred cCcEEeeCcccccCCCCCccCeeeC
Confidence 9999999999999999999999998
No 17
>PRK08662 nicotinate phosphoribosyltransferase; Reviewed
Probab=99.77 E-value=2.7e-18 Score=158.66 Aligned_cols=113 Identities=27% Similarity=0.382 Sum_probs=99.6
Q ss_pred chHHHHHHHHHHHhcCCCccEEeeCC-----CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcC
Q 026913 4 GVPNFCAVALALNDLGYKAVGIRLDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG 78 (231)
Q Consensus 4 Gv~naI~va~~l~~~g~~~~gVRlDS-----GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g 78 (231)
.+..|++++.+ .|+.+.+||+|| ||+.++++++|++||+. |+++++|.+|||||++.|.++.+.
T Consensus 213 ~~~~Al~~~~~---~~~~~d~I~LDn~~~~~g~l~~~v~~vr~~ld~~-------g~~~v~IeaSGgI~~~ni~~ya~~- 281 (343)
T PRK08662 213 EREEALRAAEA---LGDRLDGVRLDTPSSRRGNFRKIVREVRWTLDIR-------GYEHVKIFVSGGLDPERIRELRDV- 281 (343)
T ss_pred cHHHHHHHHHH---hCCcCCEEEcCCCCCCCccHHHHHHHHHHHHHhc-------CCCCeEEEEeCCCCHHHHHHHHHh-
Confidence 45677777664 367789999999 99999999999999997 788899999999999999999876
Q ss_pred CcccEEeeCCcccccCCCCccceEEEEeEECCccccccCCCCCCCCCCccceeE
Q 026913 79 HEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSY 132 (231)
Q Consensus 79 ~~id~fGvGT~l~~~~~~p~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~v~ 132 (231)
+|.|||||.+.+ +|++++++|++++||+|++|+|+.+||..+|-.++|-
T Consensus 282 --vD~isvGs~~~~---a~~lDis~~iv~~~g~~~~K~~~~~g~~~~~~~~~~~ 330 (343)
T PRK08662 282 --VDGFGVGTYISF---APPVDFSMDIVEVEGKPIAKRGKLPGIKQVPRLKEIR 330 (343)
T ss_pred --CCEEEcCccccC---CCccceEEEEEEECCeeeEeecCCcccccCCCHHHHH
Confidence 999999999976 6999999999999999999999877777777666653
No 18
>cd01571 NAPRTase_B Nicotinate phosphoribosyltransferase (NAPRTase), subgroup B. Nicotinate phosphoribosyltransferase catalyses the formation of NAMN and PPi from 5-phosphoribosy -1-pyrophosphate (PRPP) and nicotinic acid, this is the first, and also rate limiting, reaction in the NAD salvage synthesis. This salvage pathway serves to recycle NAD degradation products.
Probab=99.70 E-value=1.4e-16 Score=145.00 Aligned_cols=99 Identities=34% Similarity=0.494 Sum_probs=90.3
Q ss_pred chHHHHHHHHHHHhcCCCccEEeeCC-----CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcC
Q 026913 4 GVPNFCAVALALNDLGYKAVGIRLDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG 78 (231)
Q Consensus 4 Gv~naI~va~~l~~~g~~~~gVRlDS-----GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g 78 (231)
.+.+|+++++++ +.++.+||+|| ||+.++++++|+.|++. |+++++|.+|||||++.|.++.+.|
T Consensus 197 ~v~eal~~~~~~---~~~~d~I~lDn~~~~~G~~~~~~~~~~~~l~~~-------g~~~~~ieaSGgI~~~~i~~~a~~g 266 (302)
T cd01571 197 EKEEALKAAKAL---GDKLDGVRLDTPSSRRGVFRYLIREVRWALDIR-------GYKHVKIFVSGGLDEEDIKELEDVG 266 (302)
T ss_pred chHHHHHHHHHh---CCCCcEEEECCCCCCCCCHHHHHHHHHHHHHhC-------CCCCeEEEEeCCCCHHHHHHHHHcC
Confidence 577888887653 45689999999 99999999999999997 7888999999999999999999999
Q ss_pred CcccEEeeCCcccccCCCCccceEEEEeEECCccccccC
Q 026913 79 HEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKLS 117 (231)
Q Consensus 79 ~~id~fGvGT~l~~~~~~p~l~~vyKlv~~~g~p~~K~S 117 (231)
+|.||||+.+.+ +|++++++|++++||+|++|++
T Consensus 267 --vD~isvGs~~~~---~~~~D~s~~iv~~~g~~~~K~g 300 (302)
T cd01571 267 --VDAFGVGTAISK---APPVDFTMDIVEVNGQPIAKRG 300 (302)
T ss_pred --CCEEECCcccCC---CCCCCEEEEEEEECCeeeeccC
Confidence 999999999966 7899999999999999999994
No 19
>cd00516 PRTase_typeII Phosphoribosyltransferase (PRTase) type II; This family contains two enzymes that play an important role in NAD production by either allowing quinolinic acid (QA) , quinolinate phosphoribosyl transferase (QAPRTase), or nicotinic acid (NA), nicotinate phosphoribosyltransferase (NAPRTase), to be used in the synthesis of NAD. QAPRTase catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide, an important step in the de novo synthesis of NAD. NAPRTase catalyses a similar reaction leading to NAMN and pyrophosphate, using nicotinic acid an PPRP as substrates, used in the NAD salvage pathway.
Probab=99.28 E-value=1.2e-11 Score=110.37 Aligned_cols=72 Identities=43% Similarity=0.618 Sum_probs=65.5
Q ss_pred CccEEeeCCC-----ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCC
Q 026913 21 KAVGIRLDSG-----DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (231)
Q Consensus 21 ~~~gVRlDSG-----Dl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~ 95 (231)
++.+||+||| +++....+.+++|+.. |+++++|++|||+|++.|+.+.+.| +|+|||||.+.++
T Consensus 205 ~~d~irlDs~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~i~~Sggi~~~~i~~~~~~g--vd~~gvG~~~~~~-- 273 (281)
T cd00516 205 GADGIRLDSGSPEELDPAVLILKARAHLDGK-------GLPRVKIEASGGLDEENIRAYAETG--VDVFGVGTLLHSA-- 273 (281)
T ss_pred CCCEEEeCCCChHHHHHHHHHHHHHHhhhhc-------CCCceEEEEeCCCCHHHHHHHHHcC--CCEEEeCcccccC--
Confidence 4789999999 8888888888888865 8999999999999999999999988 9999999999884
Q ss_pred CCccceEEE
Q 026913 96 QAALGCVFK 104 (231)
Q Consensus 96 ~p~l~~vyK 104 (231)
|+++++||
T Consensus 274 -~~~di~~k 281 (281)
T cd00516 274 -PPLDIVLK 281 (281)
T ss_pred -cccCeEeC
Confidence 89999986
No 20
>PF01729 QRPTase_C: Quinolinate phosphoribosyl transferase, C-terminal domain; InterPro: IPR002638 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2.4.2.19 from EC is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to give rise to nicotinic acid mononucleotide (NaMN), pyrophosphate and carbon dioxide [, ]. Unlike IPR004393 from INTERPRO, this domain also includes the molybdenum transport system protein ModD.; GO: 0004514 nicotinate-nucleotide diphosphorylase (carboxylating) activity, 0009435 NAD biosynthetic process; PDB: 3C2O_A 3C2F_A 3C2E_A 3C2R_A 3C2V_A 1QPN_E 1QPO_A 1QPQ_F 1QPR_E 2I14_D ....
Probab=98.04 E-value=9.1e-06 Score=68.57 Aligned_cols=70 Identities=24% Similarity=0.259 Sum_probs=51.6
Q ss_pred CccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccc
Q 026913 21 KAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 100 (231)
Q Consensus 21 ~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~ 100 (231)
.+.+||+|..++.. .+++.+.+++. ..+++|.+|||+|++.|.++.+.| +|.++||+-..+ .|++|
T Consensus 100 g~d~I~lD~~~~~~-~~~~v~~l~~~--------~~~v~ie~SGGI~~~ni~~ya~~g--vD~isvg~~~~~---a~~~D 165 (169)
T PF01729_consen 100 GADIIMLDNMSPED-LKEAVEELREL--------NPRVKIEASGGITLENIAEYAKTG--VDVISVGSLTHS---APPLD 165 (169)
T ss_dssp T-SEEEEES-CHHH-HHHHHHHHHHH--------TTTSEEEEESSSSTTTHHHHHHTT---SEEEECHHHHS---BE---
T ss_pred CCCEEEecCcCHHH-HHHHHHHHhhc--------CCcEEEEEECCCCHHHHHHHHhcC--CCEEEcChhhcC---CcccC
Confidence 36899999999844 45556666664 245999999999999999999998 899999976655 68899
Q ss_pred eEEE
Q 026913 101 CVFK 104 (231)
Q Consensus 101 ~vyK 104 (231)
|.+|
T Consensus 166 ~sl~ 169 (169)
T PF01729_consen 166 FSLD 169 (169)
T ss_dssp EEEE
T ss_pred cCcC
Confidence 8875
No 21
>PRK08385 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.23 E-value=0.0024 Score=58.03 Aligned_cols=73 Identities=18% Similarity=0.264 Sum_probs=58.1
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCC-CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccc
Q 026913 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDF-EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 100 (231)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~-~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~ 100 (231)
...|++|.-++..+ +++.+.+++. |+ ++++|.+|||+|++.|.++.+.| +|.+.+|.-. ++ .|++|
T Consensus 203 aDiI~LDn~~~e~l-~~~v~~l~~~-------~~~~~~~leaSGGI~~~ni~~yA~tG--vD~Is~galt-~s--a~~~D 269 (278)
T PRK08385 203 ADIIMLDNMTPEEI-REVIEALKRE-------GLRERVKIEVSGGITPENIEEYAKLD--VDVISLGALT-HS--VRNFD 269 (278)
T ss_pred cCEEEECCCCHHHH-HHHHHHHHhc-------CcCCCEEEEEECCCCHHHHHHHHHcC--CCEEEeChhh-cC--CCccc
Confidence 46999999986544 5566667665 54 47999999999999999999998 7899898733 32 68899
Q ss_pred eEEEEeE
Q 026913 101 CVFKLVE 107 (231)
Q Consensus 101 ~vyKlv~ 107 (231)
+.+++++
T Consensus 270 is~~i~~ 276 (278)
T PRK08385 270 VSLEILK 276 (278)
T ss_pred eEEEEec
Confidence 9998864
No 22
>PRK05848 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=97.18 E-value=0.0019 Score=58.43 Aligned_cols=70 Identities=19% Similarity=0.286 Sum_probs=56.9
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccce
Q 026913 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (231)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~ 101 (231)
...|.+|.-++..+.+-++ ++.. +.++++|.+|||+|++.+.++.+.| +|.+.+|+-... +|++|+
T Consensus 203 aDiI~LDn~~~e~l~~~v~-~~~~--------~~~~~~ieAsGgIt~~ni~~ya~~G--vD~IsvG~l~~s---a~~~D~ 268 (273)
T PRK05848 203 ADIVMCDNMSVEEIKEVVA-YRNA--------NYPHVLLEASGNITLENINAYAKSG--VDAISSGSLIHQ---ATWIDM 268 (273)
T ss_pred CCEEEECCCCHHHHHHHHH-Hhhc--------cCCCeEEEEECCCCHHHHHHHHHcC--CCEEEeChhhcC---CCccce
Confidence 4589999999888776665 3332 5678999999999999999999999 789999985543 688999
Q ss_pred EEEE
Q 026913 102 VFKL 105 (231)
Q Consensus 102 vyKl 105 (231)
.+++
T Consensus 269 sl~~ 272 (273)
T PRK05848 269 SMKM 272 (273)
T ss_pred eeec
Confidence 8875
No 23
>PRK07896 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.77 E-value=0.0062 Score=55.62 Aligned_cols=72 Identities=19% Similarity=0.114 Sum_probs=54.4
Q ss_pred CCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCc
Q 026913 19 GYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (231)
Q Consensus 19 g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~ 98 (231)
+.....|++|--++..+ +++.+++++. .+++.|.+|||+|++.|.++.+.| +|.+.+|.-. ++ .|+
T Consensus 217 ~~gaDiI~LDnm~~e~v-k~av~~~~~~--------~~~v~ieaSGGI~~~ni~~yA~tG--vD~Is~galt-~s--a~~ 282 (289)
T PRK07896 217 AEGAELVLLDNFPVWQT-QEAVQRRDAR--------APTVLLESSGGLTLDTAAAYAETG--VDYLAVGALT-HS--VPV 282 (289)
T ss_pred HcCCCEEEeCCCCHHHH-HHHHHHHhcc--------CCCEEEEEECCCCHHHHHHHHhcC--CCEEEeChhh-cC--CCc
Confidence 45568999998885554 3334455552 468999999999999999999999 7899998743 32 678
Q ss_pred cceEEE
Q 026913 99 LGCVFK 104 (231)
Q Consensus 99 l~~vyK 104 (231)
+|+.++
T Consensus 283 ~Disl~ 288 (289)
T PRK07896 283 LDIGLD 288 (289)
T ss_pred cccccc
Confidence 888765
No 24
>cd01573 modD_like ModD; Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase) present in some modABC operons in bacteria, which are involved in molybdate transport. In general, QPRTases are part of the de novo synthesis pathway of NAD in both prokaryotes and eukaryotes. They catalyse the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide.
Probab=96.51 E-value=0.014 Score=52.67 Aligned_cols=68 Identities=18% Similarity=0.116 Sum_probs=49.0
Q ss_pred cEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccceE
Q 026913 23 VGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCV 102 (231)
Q Consensus 23 ~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~v 102 (231)
..|.+|.=.+..+ +++.+.+.. .++++.|++|||++++.|.++.+.| +|.+ +.+.+.+ ++++|+.
T Consensus 205 D~I~ld~~~p~~l-~~~~~~~~~--------~~~~i~i~AsGGI~~~ni~~~~~~G--vd~I-~vsai~~---a~~~D~s 269 (272)
T cd01573 205 DILQLDKFSPEEL-AELVPKLRS--------LAPPVLLAAAGGINIENAAAYAAAG--ADIL-VTSAPYY---AKPADIK 269 (272)
T ss_pred CEEEECCCCHHHH-HHHHHHHhc--------cCCCceEEEECCCCHHHHHHHHHcC--CcEE-EEChhhc---CcccceE
Confidence 4677776665443 233333332 3467899999999999999999999 6788 6666755 7889998
Q ss_pred EEE
Q 026913 103 FKL 105 (231)
Q Consensus 103 yKl 105 (231)
+++
T Consensus 270 ~~~ 272 (272)
T cd01573 270 VKI 272 (272)
T ss_pred EeC
Confidence 764
No 25
>PRK07428 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.05 E-value=0.046 Score=49.91 Aligned_cols=73 Identities=22% Similarity=0.311 Sum_probs=55.0
Q ss_pred CCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCcc
Q 026913 20 YKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAAL 99 (231)
Q Consensus 20 ~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l 99 (231)
.....|.+|--++..+.+-+ +++++ -.+++.|.+|||+|++.|.++.+.| +|..-+|+-... +|++
T Consensus 215 ~GaD~I~LDn~~~e~l~~av-~~~~~--------~~~~i~leAsGGIt~~ni~~ya~tG--vD~Isvgsl~~s---a~~~ 280 (288)
T PRK07428 215 YGADIIMLDNMPVDLMQQAV-QLIRQ--------QNPRVKIEASGNITLETIRAVAETG--VDYISSSAPITR---SPWL 280 (288)
T ss_pred cCCCEEEECCCCHHHHHHHH-HHHHh--------cCCCeEEEEECCCCHHHHHHHHHcC--CCEEEEchhhhC---CCcc
Confidence 33567888887775554333 34443 2467899999999999999999999 788888875543 6899
Q ss_pred ceEEEEe
Q 026913 100 GCVFKLV 106 (231)
Q Consensus 100 ~~vyKlv 106 (231)
|+.++++
T Consensus 281 Dis~~i~ 287 (288)
T PRK07428 281 DLSMRIL 287 (288)
T ss_pred ceEEEec
Confidence 9998876
No 26
>PRK05742 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=96.04 E-value=0.066 Score=48.62 Aligned_cols=46 Identities=28% Similarity=0.447 Sum_probs=38.5
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccceEEEEe
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLV 106 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~vyKlv 106 (231)
.++.|++|||+|++.+.++.+.| +|.+.+|. ++++ .|++||.++++
T Consensus 232 ~~i~leAsGGIt~~ni~~~a~tG--vD~Isvg~-lt~s--~~~~D~sl~~~ 277 (277)
T PRK05742 232 GRAKLEASGGINESTLRVIAETG--VDYISIGA-MTKD--VKAVDLSMRLS 277 (277)
T ss_pred CCCcEEEECCCCHHHHHHHHHcC--CCEEEECh-hhcC--CcccceeeecC
Confidence 37899999999999999999998 78888887 3333 68899998763
No 27
>PRK09016 quinolinate phosphoribosyltransferase; Validated
Probab=95.59 E-value=0.075 Score=48.80 Aligned_cols=67 Identities=22% Similarity=0.258 Sum_probs=50.9
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccce
Q 026913 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (231)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~ 101 (231)
...|.+|--++..+.+-+ ... -.++.|-+|||+|++.|.++.+.| +|.+.+|. ++++ .+++||
T Consensus 229 aDiI~LDn~s~e~~~~av----~~~--------~~~~~ieaSGGI~~~ni~~yA~tG--VD~Is~ga-lths--a~~lD~ 291 (296)
T PRK09016 229 ADIIMLDNFTTEQMREAV----KRT--------NGRALLEVSGNVTLETLREFAETG--VDFISVGA-LTKH--VQALDL 291 (296)
T ss_pred CCEEEeCCCChHHHHHHH----Hhh--------cCCeEEEEECCCCHHHHHHHHhcC--CCEEEeCc-cccC--CCccce
Confidence 468999999975543333 222 137899999999999999999999 78888886 4443 678999
Q ss_pred EEEE
Q 026913 102 VFKL 105 (231)
Q Consensus 102 vyKl 105 (231)
.+++
T Consensus 292 sl~~ 295 (296)
T PRK09016 292 SMRF 295 (296)
T ss_pred eeec
Confidence 8875
No 28
>TIGR00078 nadC nicotinate-nucleotide pyrophosphorylase. Synonym: quinolinate phosphoribosyltransferase (decarboxylating)
Probab=94.81 E-value=0.13 Score=46.37 Aligned_cols=43 Identities=23% Similarity=0.350 Sum_probs=36.3
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccceEEEE
Q 026913 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKL 105 (231)
Q Consensus 58 v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~vyKl 105 (231)
+.|++|||++++.+.++.+.| +|.+.| +.++++ .|++|+.+++
T Consensus 223 ipi~AsGGI~~~ni~~~a~~G--vd~Isv-gait~s--a~~~D~sl~i 265 (265)
T TIGR00078 223 VLLEASGGITLDNLEEYAETG--VDVISS-GALTHS--VPALDFSLKI 265 (265)
T ss_pred CcEEEECCCCHHHHHHHHHcC--CCEEEe-CHHHcC--CCccceeeeC
Confidence 689999999999999999999 788999 556664 5788888763
No 29
>PRK06106 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=94.25 E-value=0.22 Score=45.42 Aligned_cols=69 Identities=20% Similarity=0.233 Sum_probs=50.4
Q ss_pred CCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCcc
Q 026913 20 YKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAAL 99 (231)
Q Consensus 20 ~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l 99 (231)
.....|.+|--++..+. +..... + ....|-+|||+|++.|.++.+.| +|.+.+|. ++++ +|++
T Consensus 213 ~gaDiI~LDn~s~e~l~----~av~~~-------~-~~~~leaSGGI~~~ni~~yA~tG--VD~Is~Ga-lths--a~~~ 275 (281)
T PRK06106 213 LGVDAVLLDNMTPDTLR----EAVAIV-------A-GRAITEASGRITPETAPAIAASG--VDLISVGW-LTHS--APVL 275 (281)
T ss_pred cCCCEEEeCCCCHHHHH----HHHHHh-------C-CCceEEEECCCCHHHHHHHHhcC--CCEEEeCh-hhcC--CCcc
Confidence 44679999999975553 333332 1 23459999999999999999998 78888887 4443 6788
Q ss_pred ceEEEE
Q 026913 100 GCVFKL 105 (231)
Q Consensus 100 ~~vyKl 105 (231)
|+.+++
T Consensus 276 Disl~~ 281 (281)
T PRK06106 276 DIGLDF 281 (281)
T ss_pred ccccCC
Confidence 887753
No 30
>cd01568 QPRTase_NadC Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=93.61 E-value=0.31 Score=43.83 Aligned_cols=67 Identities=28% Similarity=0.325 Sum_probs=45.4
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccce
Q 026913 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (231)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~ 101 (231)
...|.+|.=.+..+ +++.+.+.+ .+++.|++|||++++.|.++.+.| +|.+.+| .++++ .|++|+
T Consensus 202 aD~I~ld~~~~e~l-~~~v~~i~~---------~~~i~i~asGGIt~~ni~~~a~~G--ad~Isvg-al~~s--~~~~D~ 266 (269)
T cd01568 202 ADIIMLDNMSPEEL-KEAVKLLKG---------LPRVLLEASGGITLENIRAYAETG--VDVISTG-ALTHS--APALDI 266 (269)
T ss_pred CCEEEECCCCHHHH-HHHHHHhcc---------CCCeEEEEECCCCHHHHHHHHHcC--CCEEEEc-HHHcC--CCccCc
Confidence 45677777665333 222222222 257899999999999999999999 6788885 55553 456776
Q ss_pred EE
Q 026913 102 VF 103 (231)
Q Consensus 102 vy 103 (231)
.+
T Consensus 267 sl 268 (269)
T cd01568 267 SL 268 (269)
T ss_pred cc
Confidence 54
No 31
>TIGR00640 acid_CoA_mut_C methylmalonyl-CoA mutase C-terminal domain. Methylmalonyl-CoA mutase (EC 5.4.99.2) catalyzes a reversible isomerization between L-methylmalonyl-CoA and succinyl-CoA. The enzyme uses an adenosylcobalamin cofactor. It may be a homodimer, as in mitochondrion, or a heterodimer with partially homologous beta chain that does not bind the adenosylcobalamin cofactor, as in Propionibacterium freudenreichii. The most similar archaeal sequences are separate chains, such as AF2215 and AF2219 of Archaeoglobus fulgidus, that correspond roughly to the first 500 and last 130 residues, respectively of known methylmalonyl-CoA mutases. This model describes the C-terminal domain subfamily. In a neighbor-joining tree (methylaspartate mutase S chain as the outgroup), AF2219 branches with a coenzyme B12-dependent enzyme known not to be 5.4.99.2.
Probab=93.07 E-value=0.63 Score=37.57 Aligned_cols=68 Identities=19% Similarity=0.275 Sum_probs=51.4
Q ss_pred hcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 17 DLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 17 ~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
+.+....|+=-=.++-.++.+++.+.|++. |..+++|++.|.+-.+...+|.+.|. ...|+.||++..
T Consensus 51 e~~adii~iSsl~~~~~~~~~~~~~~L~~~-------g~~~i~vivGG~~~~~~~~~l~~~Gv-d~~~~~gt~~~~ 118 (132)
T TIGR00640 51 EADVHVVGVSSLAGGHLTLVPALRKELDKL-------GRPDILVVVGGVIPPQDFDELKEMGV-AEIFGPGTPIPE 118 (132)
T ss_pred HcCCCEEEEcCchhhhHHHHHHHHHHHHhc-------CCCCCEEEEeCCCChHhHHHHHHCCC-CEEECCCCCHHH
Confidence 445555555333356666777788888886 77789999999898888999999997 468999998755
No 32
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=92.95 E-value=0.44 Score=41.60 Aligned_cols=61 Identities=18% Similarity=0.281 Sum_probs=45.5
Q ss_pred hcCCCccEEee-CCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 17 DLGYKAVGIRL-DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 17 ~~g~~~~gVRl-DSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
+.|..+.++-+ +...+.+ .+.|.. .++++.++++||++++.+.++.+.| ++++|+|+.|..
T Consensus 127 ~~Gad~vklFPa~~~G~~~-----ik~l~~--------~~p~ip~~atGGI~~~N~~~~l~aG--a~~vavgs~l~~ 188 (213)
T PRK06552 127 EAGSEIVKLFPGSTLGPSF-----IKAIKG--------PLPQVNVMVTGGVNLDNVKDWFAAG--ADAVGIGGELNK 188 (213)
T ss_pred HcCCCEEEECCcccCCHHH-----HHHHhh--------hCCCCEEEEECCCCHHHHHHHHHCC--CcEEEEchHHhC
Confidence 56877777744 3322333 223333 5788999999999999999999988 689999999965
No 33
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=92.20 E-value=0.6 Score=39.40 Aligned_cols=62 Identities=18% Similarity=0.227 Sum_probs=44.2
Q ss_pred hcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 17 DLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 17 ~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
+.|..+.++ +..++. ..+..+.+.+ .++++.++++||++++.+.++.+.| +++.++|+.+.+
T Consensus 115 ~~Gad~i~~--~p~~~~--g~~~~~~l~~--------~~~~~p~~a~GGI~~~n~~~~~~~G--~~~v~v~s~i~~ 176 (190)
T cd00452 115 ELGADIVKL--FPAEAV--GPAYIKALKG--------PFPQVRFMPTGGVSLDNAAEWLAAG--VVAVGGGSLLPK 176 (190)
T ss_pred HCCCCEEEE--cCCccc--CHHHHHHHHh--------hCCCCeEEEeCCCCHHHHHHHHHCC--CEEEEEchhcch
Confidence 457766665 544432 2333333333 4567899999999999999999999 789999988864
No 34
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=91.56 E-value=0.29 Score=42.59 Aligned_cols=37 Identities=19% Similarity=0.273 Sum_probs=34.8
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
.|++++++.+||++.+.+.++++.| ..++|+|++|+.
T Consensus 145 plp~i~~~ptGGV~~~N~~~~l~aG--a~~vg~Gs~L~~ 181 (204)
T TIGR01182 145 PFPQVRFCPTGGINLANVRDYLAAP--NVACGGGSWLVP 181 (204)
T ss_pred cCCCCcEEecCCCCHHHHHHHHhCC--CEEEEEChhhcC
Confidence 6899999999999999999999988 679999999986
No 35
>PRK06096 molybdenum transport protein ModD; Provisional
Probab=90.65 E-value=2.1 Score=39.19 Aligned_cols=72 Identities=14% Similarity=0.105 Sum_probs=50.4
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccce
Q 026913 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (231)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~ 101 (231)
...|=+|--++..+.+ +.+++++. .+++.|-+|||++++.|.++...| +|.+ +-+.|.+ .|++|+
T Consensus 210 aDiI~LDn~~~e~l~~-av~~~~~~--------~~~~~leaSGGI~~~ni~~yA~tG--vD~I-s~gal~~---a~~~Di 274 (284)
T PRK06096 210 PDVLQLDKFSPQQATE-IAQIAPSL--------APHCTLSLAGGINLNTLKNYADCG--IRLF-ITSAPYY---AAPADI 274 (284)
T ss_pred CCEEEECCCCHHHHHH-HHHHhhcc--------CCCeEEEEECCCCHHHHHHHHhcC--CCEE-EECcccc---CCCcCe
Confidence 4567777777655533 33344331 257899999999999999999998 6666 4445644 388999
Q ss_pred EEEEeEE
Q 026913 102 VFKLVEI 108 (231)
Q Consensus 102 vyKlv~~ 108 (231)
.+++...
T Consensus 275 sl~i~~~ 281 (284)
T PRK06096 275 KVSLQPA 281 (284)
T ss_pred EEEEEec
Confidence 9988543
No 36
>cd02071 MM_CoA_mut_B12_BD methylmalonyl CoA mutase B12 binding domain. This domain binds to B12 (adenosylcobamide), which initiates the conversion of succinyl CoA and methylmalonyl CoA by forming an adenosyl radical, which then undergoes a rearrangement exchanging a hydrogen atom with a group attached to a neighboring carbon atom. This family is present in both mammals and bacteria. Bacterial members are heterodimers and involved in the fermentation of pyruvate to propionate. Mammalian members are homodimers and responsible for the conversion of odd-chain fatty acids and branched-chain amino acids via propionyl CoA to succinyl CoA for further degradation.
Probab=90.16 E-value=2.2 Score=33.46 Aligned_cols=66 Identities=20% Similarity=0.293 Sum_probs=46.4
Q ss_pred CCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 19 GYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 19 g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
+....++=.-.+......+++.+.|.+. |+++++|++.|..-.+.+.++.+.|. -..|+.||..-+
T Consensus 50 ~~d~V~iS~~~~~~~~~~~~~~~~L~~~-------~~~~i~i~~GG~~~~~~~~~~~~~G~-d~~~~~~~~~~~ 115 (122)
T cd02071 50 DVDVIGLSSLSGGHMTLFPEVIELLREL-------GAGDILVVGGGIIPPEDYELLKEMGV-AEIFGPGTSIEE 115 (122)
T ss_pred CCCEEEEcccchhhHHHHHHHHHHHHhc-------CCCCCEEEEECCCCHHHHHHHHHCCC-CEEECCCCCHHH
Confidence 4444455333345555566666666665 77889999999888888999999994 357888887643
No 37
>cd01572 QPRTase Quinolinate phosphoribosyl transferase (QAPRTase or QPRTase), also called nicotinate-nucleotide pyrophosphorylase, is involved in the de novo synthesis of NAD in both prokaryotes and eukaryotes. It catalyses the reaction of quinolinic acid (QA) with 5-phosphoribosyl-1-pyrophosphate (PRPP) in the presence of Mg2+ to produce nicotinic acid mononucleotide (NAMN), pyrophosphate and carbon dioxide. QPRTase functions as a homodimer with two active sites, each formed by the C-terminal region of one subunit and the N-terminal region of the other.
Probab=90.10 E-value=1.5 Score=39.45 Aligned_cols=43 Identities=26% Similarity=0.431 Sum_probs=34.8
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccceEEE
Q 026913 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFK 104 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~vyK 104 (231)
++.|++|||++++.|.++.+.| +|.+.||+ ++++ .|++|+.++
T Consensus 226 ~ipi~AiGGI~~~ni~~~a~~G--vd~Iav~s-l~~~--a~~~D~sl~ 268 (268)
T cd01572 226 RVLLEASGGITLENIRAYAETG--VDYISVGA-LTHS--APALDISLD 268 (268)
T ss_pred CCcEEEECCCCHHHHHHHHHcC--CCEEEEEe-eecC--CCccCccCC
Confidence 5789999999999999999998 68888887 4332 567887653
No 38
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=90.08 E-value=0.46 Score=41.87 Aligned_cols=37 Identities=22% Similarity=0.364 Sum_probs=34.1
Q ss_pred CCCCeEEEEeCCCCH--HHHHHHHhcCCcccEEeeCCcccc
Q 026913 54 DFEKMSITASNDLNE--ETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~I~~S~~Lde--~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
.|++++++.+||+++ +.+.++++.| ..++|+|+.|+.
T Consensus 155 p~p~i~~~ptGGV~~~~~n~~~yl~aG--a~avg~Gs~L~~ 193 (222)
T PRK07114 155 PMPWTKIMPTGGVEPTEENLKKWFGAG--VTCVGMGSKLIP 193 (222)
T ss_pred cCCCCeEEeCCCCCcchhcHHHHHhCC--CEEEEEChhhcC
Confidence 699999999999998 8999999888 689999999986
No 39
>COG2185 Sbm Methylmalonyl-CoA mutase, C-terminal domain/subunit (cobalamin-binding) [Lipid metabolism]
Probab=89.75 E-value=2.2 Score=35.29 Aligned_cols=66 Identities=17% Similarity=0.230 Sum_probs=56.6
Q ss_pred CCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 19 GYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 19 g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
.....||=.=+|.=..+..++++.|.++ |.+++.+++.|-+-.+.+.+|.+.|.. -.|+.||.+..
T Consensus 63 dv~vIgvSsl~g~h~~l~~~lve~lre~-------G~~~i~v~~GGvip~~d~~~l~~~G~~-~if~pgt~~~~ 128 (143)
T COG2185 63 DVDVIGVSSLDGGHLTLVPGLVEALREA-------GVEDILVVVGGVIPPGDYQELKEMGVD-RIFGPGTPIEE 128 (143)
T ss_pred CCCEEEEEeccchHHHHHHHHHHHHHHh-------CCcceEEeecCccCchhHHHHHHhCcc-eeeCCCCCHHH
Confidence 3445677767788889999999999998 999988999999999999999999864 48999999865
No 40
>PRK08072 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=89.64 E-value=1.9 Score=39.18 Aligned_cols=44 Identities=30% Similarity=0.403 Sum_probs=36.0
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccceEEEE
Q 026913 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKL 105 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~vyKl 105 (231)
++.|+++||++++.+.++.+.| +|.+-||. ++++ .|++|+.+++
T Consensus 232 ~i~i~AiGGIt~~ni~~~a~~G--vd~IAvg~-l~~s--a~~~D~~~~~ 275 (277)
T PRK08072 232 AIVTEASGGITLENLPAYGGTG--VDYISLGF-LTHS--VKALDISFNI 275 (277)
T ss_pred CceEEEECCCCHHHHHHHHHcC--CCEEEECh-hhcC--CcccceEEEc
Confidence 4678999999999999999999 67777775 5443 5889988775
No 41
>cd04726 KGPDC_HPS 3-Keto-L-gulonate 6-phosphate decarboxylase (KGPDC) and D-arabino-3-hexulose-6-phosphate synthase (HPS). KGPDC catalyzes the formation of L-xylulose 5-phosphate and carbon dioxide from 3-keto-L-gulonate 6-phosphate as part of the anaerobic pathway for L-ascorbate utilization in some eubacteria. HPS catalyzes the formation of D-arabino-3-hexulose-6-phosphate from D-ribulose 5-phosphate and formaldehyde in microorganisms that can use formaldehyde as a carbon source. Both catalyze reactions that involve the Mg2+-assisted formation and stabilization of 1,2-enediolate reaction intermediates.
Probab=89.55 E-value=0.46 Score=39.84 Aligned_cols=37 Identities=16% Similarity=0.306 Sum_probs=32.8
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
.++.|+++||++++.+.++.+.| +|+++||+.++...
T Consensus 157 ~~~~i~~~GGI~~~~i~~~~~~G--ad~vvvGsai~~~~ 193 (202)
T cd04726 157 LGVKVAVAGGITPDTLPEFKKAG--ADIVIVGRAITGAA 193 (202)
T ss_pred cCCCEEEECCcCHHHHHHHHhcC--CCEEEEeehhcCCC
Confidence 46789999999999999999988 68999999997644
No 42
>cd02072 Glm_B12_BD B12 binding domain of glutamate mutase (Glm). Glutamate mutase catalysis the conversion of (S)-glutamate with (2S,3S)-3-methylaspartate. The rearrangement reaction is initiated by the extraction of a hydrogen from the protein-bound substrate by a 5'-desoxyadenosyl radical, which is generated by the homolytic cleavage of the organometallic bond of the cofactor B12. Glm is a heterotetrameric molecule consisting of two alpha and two epsilon polypeptide chains.
Probab=89.36 E-value=3.2 Score=33.64 Aligned_cols=55 Identities=15% Similarity=0.158 Sum_probs=41.6
Q ss_pred CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC------HHHHHHHHhcCCcccEEeeCCcccc
Q 026913 30 GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN------EETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 30 GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld------e~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
|--....+++.+.|+++ |+.+++|++.|.+- ++...+|.+.|.. ..||-||.+.+
T Consensus 61 t~~~~~~~~~~~~l~~~-------gl~~v~vivGG~~~i~~~d~~~~~~~L~~~Gv~-~vf~pgt~~~~ 121 (128)
T cd02072 61 GHGEIDCKGLREKCDEA-------GLKDILLYVGGNLVVGKQDFEDVEKRFKEMGFD-RVFAPGTPPEE 121 (128)
T ss_pred cCCHHHHHHHHHHHHHC-------CCCCCeEEEECCCCCChhhhHHHHHHHHHcCCC-EEECcCCCHHH
Confidence 34355567778888887 88789999999973 4566779999973 58999997654
No 43
>PRK02261 methylaspartate mutase subunit S; Provisional
Probab=89.13 E-value=2.9 Score=33.86 Aligned_cols=64 Identities=16% Similarity=0.063 Sum_probs=44.4
Q ss_pred CccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC------CHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 21 KAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL------NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 21 ~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L------de~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
.+.++=.=++-.....+++.+.|++. |+++++|+++|.+ .++..+++.+.|+ -..|+=||.+-+
T Consensus 56 d~V~lS~~~~~~~~~~~~~~~~L~~~-------~~~~~~i~vGG~~~~~~~~~~~~~~~l~~~G~-~~vf~~~~~~~~ 125 (137)
T PRK02261 56 DAILVSSLYGHGEIDCRGLREKCIEA-------GLGDILLYVGGNLVVGKHDFEEVEKKFKEMGF-DRVFPPGTDPEE 125 (137)
T ss_pred CEEEEcCccccCHHHHHHHHHHHHhc-------CCCCCeEEEECCCCCCccChHHHHHHHHHcCC-CEEECcCCCHHH
Confidence 33344333355555666677777765 7788999999998 5777788888885 358998887643
No 44
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=88.77 E-value=0.41 Score=41.37 Aligned_cols=38 Identities=24% Similarity=0.406 Sum_probs=32.0
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 54 g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
.|++++++.+||++++.+.++.+.| ..+.|+|+.|+..
T Consensus 145 p~p~~~~~ptGGV~~~N~~~~l~ag--~~~vg~Gs~L~~~ 182 (196)
T PF01081_consen 145 PFPDLPFMPTGGVNPDNLAEYLKAG--AVAVGGGSWLFPK 182 (196)
T ss_dssp TTTT-EEEEBSS--TTTHHHHHTST--TBSEEEESGGGSH
T ss_pred cCCCCeEEEcCCCCHHHHHHHHhCC--CEEEEECchhcCH
Confidence 6999999999999999999999988 5789999999874
No 45
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=88.10 E-value=1.9 Score=37.61 Aligned_cols=63 Identities=13% Similarity=0.144 Sum_probs=44.3
Q ss_pred HHhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 15 LNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 15 l~~~g~~~~gVRlDS--GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
..+.|.+..-+.+=+ |.+.++ +.|.. .|++++++.+||++++.+.++.+.| ....|.|+.|+.
T Consensus 124 a~~~Ga~~vKlFPa~~~gg~~~l-----k~l~~--------p~p~~~~~ptGGV~~~ni~~~l~ag--~v~~vggs~L~~ 188 (212)
T PRK05718 124 GMELGLRTFKFFPAEASGGVKML-----KALAG--------PFPDVRFCPTGGISPANYRDYLALP--NVLCIGGSWMVP 188 (212)
T ss_pred HHHCCCCEEEEccchhccCHHHH-----HHHhc--------cCCCCeEEEeCCCCHHHHHHHHhCC--CEEEEEChHhCC
Confidence 345688777774422 344333 23433 5889999999999999999999988 345555888875
No 46
>TIGR03128 RuMP_HxlA 3-hexulose-6-phosphate synthase. at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin. In these species, the enzyme is viewed as a lyase rather than a synthase and is called D-arabino 3-hexulose 6-phosphate formaldehyde lyase. Note that there is some overlap in specificity with the Escherichia coli enzyme 3-keto-L-gulonate 6-phosphate decarboxylase.
Probab=87.57 E-value=1.3 Score=37.31 Aligned_cols=37 Identities=16% Similarity=0.274 Sum_probs=31.9
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
+.+.|.+.||++.+.+.++.+.| ++.+.+|+.+.++.
T Consensus 157 ~~~~i~v~GGI~~~n~~~~~~~G--a~~v~vGsai~~~~ 193 (206)
T TIGR03128 157 KEARVAVAGGINLDTIPDVIKLG--PDIVIVGGAITKAA 193 (206)
T ss_pred CCCcEEEECCcCHHHHHHHHHcC--CCEEEEeehhcCCC
Confidence 34678889999999999999988 68999999998753
No 47
>PRK07455 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=87.49 E-value=1.2 Score=37.89 Aligned_cols=37 Identities=16% Similarity=0.284 Sum_probs=32.9
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
.++++.+++.||++.+.+.++.+.| +++.|||+.|..
T Consensus 149 ~~~~ipvvaiGGI~~~n~~~~l~aG--a~~vav~s~i~~ 185 (187)
T PRK07455 149 PLGHIPLIPTGGVTLENAQAFIQAG--AIAVGLSGQLFP 185 (187)
T ss_pred hCCCCcEEEeCCCCHHHHHHHHHCC--CeEEEEehhccc
Confidence 3567899999999999999999988 689999999865
No 48
>COG0157 NadC Nicotinate-nucleotide pyrophosphorylase [Coenzyme metabolism]
Probab=87.39 E-value=6.1 Score=36.17 Aligned_cols=47 Identities=23% Similarity=0.418 Sum_probs=37.8
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccceEEEEeE
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVE 107 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~vyKlv~ 107 (231)
.++.+=+||+++++.|.++..-| +|.+-+|. |+++ .|.+|+.+++..
T Consensus 233 ~~~~lEaSGgIt~~ni~~yA~tG--VD~IS~ga-lths--~~~lDisl~~~~ 279 (280)
T COG0157 233 GRALLEASGGITLENIREYAETG--VDVISVGA-LTHS--APALDISLDIVR 279 (280)
T ss_pred CceEEEEeCCCCHHHHHHHhhcC--CCEEEeCc-cccC--CcccceEEEeec
Confidence 37899999999999999999988 66776663 4443 688999998763
No 49
>PRK06978 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=87.21 E-value=4.4 Score=37.27 Aligned_cols=68 Identities=24% Similarity=0.315 Sum_probs=47.2
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccce
Q 026913 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (231)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~ 101 (231)
...|=+|--++..+.+- .... + .++.|-+|||++++.|.++.+.|. |..=+|. |+++ .|++|+
T Consensus 226 aDiImLDnmspe~l~~a----v~~~------~--~~~~lEaSGGIt~~ni~~yA~tGV--D~IS~ga-lths--a~~lD~ 288 (294)
T PRK06978 226 AQSVLLDNFTLDMMREA----VRVT------A--GRAVLEVSGGVNFDTVRAFAETGV--DRISIGA-LTKD--VRATDY 288 (294)
T ss_pred CCEEEECCCCHHHHHHH----HHhh------c--CCeEEEEECCCCHHHHHHHHhcCC--CEEEeCc-cccC--Ccccce
Confidence 45677777776555432 2221 1 267999999999999999999995 4444443 4444 689999
Q ss_pred EEEEe
Q 026913 102 VFKLV 106 (231)
Q Consensus 102 vyKlv 106 (231)
.+++.
T Consensus 289 sl~~~ 293 (294)
T PRK06978 289 SMRIV 293 (294)
T ss_pred EEecc
Confidence 98875
No 50
>PRK06543 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=86.78 E-value=4 Score=37.30 Aligned_cols=67 Identities=25% Similarity=0.322 Sum_probs=47.3
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccce
Q 026913 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (231)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~ 101 (231)
...|=+|--++..+.+-+. +++ ..+.|-+|||+|++.|.++...| +|..=+|. |+++ .|++|+
T Consensus 214 aDiImLDn~s~e~l~~av~-~~~-----------~~~~leaSGgI~~~ni~~yA~tG--VD~Is~ga-lths--~~~~D~ 276 (281)
T PRK06543 214 VDTIMLDNFSLDDLREGVE-LVD-----------GRAIVEASGNVNLNTVGAIASTG--VDVISVGA-LTHS--VRALDL 276 (281)
T ss_pred CCEEEECCCCHHHHHHHHH-HhC-----------CCeEEEEECCCCHHHHHHHHhcC--CCEEEeCc-cccC--Ccccce
Confidence 4578888888766543332 221 24589999999999999999999 45555554 5443 678999
Q ss_pred EEEE
Q 026913 102 VFKL 105 (231)
Q Consensus 102 vyKl 105 (231)
.+++
T Consensus 277 sl~i 280 (281)
T PRK06543 277 GLDI 280 (281)
T ss_pred eeec
Confidence 8874
No 51
>TIGR01305 GMP_reduct_1 guanosine monophosphate reductase, eukaryotic. A deep split separates two families of GMP reductase. This family includes both eukaryotic and some proteobacterial sequences, while the other family contains other bacterial sequences.
Probab=86.53 E-value=2 Score=40.30 Aligned_cols=91 Identities=21% Similarity=0.204 Sum_probs=66.0
Q ss_pred HHHHHHHHhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEee
Q 026913 9 CAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 9 I~va~~l~~~g~~~~gVRlDS--GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGv 86 (231)
.+-+.+|-+.+..+..|=+|| |. |..+.+.+..... -++++.|++.|=.+.+..+.|.+.|+...--||
T Consensus 109 ~er~~~L~~a~~~~d~iviD~AhGh----s~~~i~~ik~ir~-----~~p~~~viaGNV~T~e~a~~Li~aGAD~ikVgi 179 (343)
T TIGR01305 109 LEKMTSILEAVPQLKFICLDVANGY----SEHFVEFVKLVRE-----AFPEHTIMAGNVVTGEMVEELILSGADIVKVGI 179 (343)
T ss_pred HHHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHh-----hCCCCeEEEecccCHHHHHHHHHcCCCEEEEcc
Confidence 344666777776678899999 76 3333333333322 246789999999999999999999987655663
Q ss_pred ------CCcccccCCCCccceEEEEeEE
Q 026913 87 ------GTYLVTCYAQAALGCVFKLVEI 108 (231)
Q Consensus 87 ------GT~l~~~~~~p~l~~vyKlv~~ 108 (231)
+|+.++....|.+..++++++.
T Consensus 180 GpGSicttR~~~Gvg~pqltAv~~~a~a 207 (343)
T TIGR01305 180 GPGSVCTTRTKTGVGYPQLSAVIECADA 207 (343)
T ss_pred cCCCcccCceeCCCCcCHHHHHHHHHHH
Confidence 4777777777899988888765
No 52
>cd00564 TMP_TenI Thiamine monophosphate synthase (TMP synthase)/TenI. TMP synthase catalyzes an important step in the thiamine biosynthesis pathway, the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl) thiazole phosphate to yield thiamine phosphate. TenI is a enzymatically inactive regulatory protein involved in the regulation of several extracellular enzymes. This superfamily also contains other enzymatically inactive proteins with unknown functions.
Probab=86.47 E-value=0.82 Score=37.41 Aligned_cols=36 Identities=11% Similarity=0.211 Sum_probs=32.2
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
.++.|++.||++++.+.++.+.| .+++.+|+.+..+
T Consensus 149 ~~~pv~a~GGi~~~~i~~~~~~G--a~~i~~g~~i~~~ 184 (196)
T cd00564 149 VEIPVVAIGGITPENAAEVLAAG--ADGVAVISAITGA 184 (196)
T ss_pred CCCCEEEECCCCHHHHHHHHHcC--CCEEEEehHhhcC
Confidence 45789999999999999999988 6899999999765
No 53
>PRK08883 ribulose-phosphate 3-epimerase; Provisional
Probab=86.44 E-value=1.5 Score=38.29 Aligned_cols=35 Identities=11% Similarity=0.330 Sum_probs=30.9
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
++.|.+-||++++.+..+.+.| +|.|=+||.+..+
T Consensus 167 ~~~I~vdGGI~~eni~~l~~aG--Ad~vVvGSaIf~~ 201 (220)
T PRK08883 167 DIRLEIDGGVKVDNIREIAEAG--ADMFVAGSAIFGQ 201 (220)
T ss_pred CeeEEEECCCCHHHHHHHHHcC--CCEEEEeHHHhCC
Confidence 4689999999999999999999 6888899998753
No 54
>PRK05096 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=86.23 E-value=2.3 Score=39.89 Aligned_cols=90 Identities=21% Similarity=0.221 Sum_probs=66.1
Q ss_pred HHHHHHHhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeC
Q 026913 10 AVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 10 ~va~~l~~~g~~~~gVRlDS--GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvG 87 (231)
+-..+|-+....+..|=+|| |. |..+.+++.+... -|+++.||+.|=.+.+..++|.+.|+.+.--|||
T Consensus 111 er~~~L~~~~~g~D~iviD~AhGh----s~~~i~~ik~ik~-----~~P~~~vIaGNV~T~e~a~~Li~aGAD~vKVGIG 181 (346)
T PRK05096 111 EKTKQILALSPALNFICIDVANGY----SEHFVQFVAKARE-----AWPDKTICAGNVVTGEMVEELILSGADIVKVGIG 181 (346)
T ss_pred HHHHHHHhcCCCCCEEEEECCCCc----HHHHHHHHHHHHH-----hCCCCcEEEecccCHHHHHHHHHcCCCEEEEccc
Confidence 33455655434466788898 66 3333344433322 3678899999999999999999999887777888
Q ss_pred ------CcccccCCCCccceEEEEeEE
Q 026913 88 ------TYLVTCYAQAALGCVFKLVEI 108 (231)
Q Consensus 88 ------T~l~~~~~~p~l~~vyKlv~~ 108 (231)
|.+++..+.|-+..+|++.+.
T Consensus 182 pGSiCtTr~vtGvG~PQltAV~~~a~~ 208 (346)
T PRK05096 182 PGSVCTTRVKTGVGYPQLSAVIECADA 208 (346)
T ss_pred CCccccCccccccChhHHHHHHHHHHH
Confidence 778888888999999888765
No 55
>cd04729 NanE N-acetylmannosamine-6-phosphate epimerase (NanE) converts N-acetylmannosamine-6-phosphate to N-acetylglucosamine-6-phosphate. This reaction is part of the pathway that allows the usage of sialic acid as a carbohydrate source. Sialic acids are a family of related sugars that are found as a component of glycoproteins, gangliosides, and other sialoglycoconjugates.
Probab=85.98 E-value=1.9 Score=36.95 Aligned_cols=36 Identities=17% Similarity=0.221 Sum_probs=31.6
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
++.|++.||+ +.+.+.++.+.| .|+++|||.|+...
T Consensus 177 ~ipvia~GGI~~~~~~~~~l~~G--adgV~vGsal~~~~ 213 (219)
T cd04729 177 GIPVIAEGRINSPEQAAKALELG--ADAVVVGSAITRPE 213 (219)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCC--CCEEEEchHHhChH
Confidence 4689999999 799999999988 69999999998743
No 56
>TIGR00693 thiE thiamine-phosphate pyrophosphorylase. This model includes ThiE from Bacillus subtilis but excludes its paralog, the regulatory protein TenI, and neighbors of TenI.
Probab=85.38 E-value=1 Score=37.67 Aligned_cols=36 Identities=14% Similarity=0.225 Sum_probs=32.1
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
++.|++.||++++.+.++.+.| .+++.+|+.+..+.
T Consensus 152 ~~pv~a~GGI~~~~~~~~~~~G--~~gva~~~~i~~~~ 187 (196)
T TIGR00693 152 DIPIVAIGGITLENAAEVLAAG--ADGVAVVSAIMQAA 187 (196)
T ss_pred CCCEEEECCcCHHHHHHHHHcC--CCEEEEhHHhhCCC
Confidence 4789999999999999999888 68999999998754
No 57
>PRK09140 2-dehydro-3-deoxy-6-phosphogalactonate aldolase; Reviewed
Probab=84.95 E-value=2.7 Score=36.39 Aligned_cols=63 Identities=22% Similarity=0.288 Sum_probs=44.5
Q ss_pred hcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCC-CeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 17 DLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFE-KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 17 ~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~-~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
+.|.++.++-+-+ . +.....+.+.. .++ ++.+++.||++++.+.++.+.| .++.+||+.|...
T Consensus 122 ~~Gad~vk~Fpa~-~---~G~~~l~~l~~--------~~~~~ipvvaiGGI~~~n~~~~~~aG--a~~vav~s~l~~~ 185 (206)
T PRK09140 122 RAGAQALKLFPAS-Q---LGPAGIKALRA--------VLPPDVPVFAVGGVTPENLAPYLAAG--AAGFGLGSALYRP 185 (206)
T ss_pred HcCCCEEEECCCC-C---CCHHHHHHHHh--------hcCCCCeEEEECCCCHHHHHHHHHCC--CeEEEEehHhccc
Confidence 4677777775422 1 12222223333 354 6899999999999999999998 6899999999763
No 58
>PRK08745 ribulose-phosphate 3-epimerase; Provisional
Probab=84.76 E-value=2.7 Score=36.98 Aligned_cols=37 Identities=14% Similarity=0.346 Sum_probs=31.6
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 54 g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
++ +++|-+-||+++++|..+.+.|+ |.|=+||.+...
T Consensus 169 ~~-~~~IeVDGGI~~eti~~l~~aGa--Di~V~GSaiF~~ 205 (223)
T PRK08745 169 GK-PIRLEIDGGVKADNIGAIAAAGA--DTFVAGSAIFNA 205 (223)
T ss_pred CC-CeeEEEECCCCHHHHHHHHHcCC--CEEEEChhhhCC
Confidence 44 47999999999999999999994 788889998753
No 59
>PRK06559 nicotinate-nucleotide pyrophosphorylase; Provisional
Probab=84.65 E-value=5.7 Score=36.46 Aligned_cols=68 Identities=19% Similarity=0.208 Sum_probs=47.1
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccce
Q 026913 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (231)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~ 101 (231)
...|=+|--++..+.+-+ +++. .++.|-+|||++++.|.++...|. |..=+|. |+++ +|++|+
T Consensus 218 aDiImLDnmspe~l~~av-~~~~-----------~~~~leaSGGI~~~ni~~yA~tGV--D~Is~ga-lths--a~~~Di 280 (290)
T PRK06559 218 ADIIMLDNMSLEQIEQAI-TLIA-----------GRSRIECSGNIDMTTISRFRGLAI--DYVSSGS-LTHS--AKSLDF 280 (290)
T ss_pred CCEEEECCCCHHHHHHHH-HHhc-----------CceEEEEECCCCHHHHHHHHhcCC--CEEEeCc-cccC--Ccccce
Confidence 457778878876654333 2221 267999999999999999999995 4444443 4443 678888
Q ss_pred EEEEe
Q 026913 102 VFKLV 106 (231)
Q Consensus 102 vyKlv 106 (231)
.+|..
T Consensus 281 sl~~~ 285 (290)
T PRK06559 281 SMKGL 285 (290)
T ss_pred eeech
Confidence 77653
No 60
>PRK00043 thiE thiamine-phosphate pyrophosphorylase; Reviewed
Probab=84.28 E-value=1.8 Score=36.33 Aligned_cols=37 Identities=14% Similarity=0.215 Sum_probs=32.4
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
+++.|++.||++.+.+.++.+.| .+++.+|+.+..+.
T Consensus 159 ~~~~v~a~GGI~~~~i~~~~~~G--a~gv~~gs~i~~~~ 195 (212)
T PRK00043 159 GDIPIVAIGGITPENAPEVLEAG--ADGVAVVSAITGAE 195 (212)
T ss_pred CCCCEEEECCcCHHHHHHHHHcC--CCEEEEeHHhhcCC
Confidence 34799999999999999999999 68999999997643
No 61
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=83.82 E-value=1.5 Score=38.46 Aligned_cols=37 Identities=22% Similarity=0.433 Sum_probs=34.5
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
.|++++++..||+++..+.+....| +.++|+|+.|+.
T Consensus 150 P~~~v~~~pTGGVs~~N~~~yla~g--v~avG~Gs~l~~ 186 (211)
T COG0800 150 PFPQVRFCPTGGVSLDNAADYLAAG--VVAVGLGSWLVP 186 (211)
T ss_pred CCCCCeEeecCCCCHHHHHHHHhCC--ceEEecCccccC
Confidence 4899999999999999999999888 899999999986
No 62
>TIGR01334 modD putative molybdenum utilization protein ModD. The gene modD for a member of this family is found with molybdenum transport genes modABC in Rhodobacter capsulatus. However, disruption of modD causes only a 4-fold (rather than 500-fold for modA, modB, modC) change in the external molybdenum concentration required to suppress an alternative nitrogenase. ModD proteins are highly similar to nicotinate-nucleotide pyrophosphorylase (also called quinolinate phosphoribosyltransferase). The function unknown.
Probab=83.79 E-value=11 Score=34.31 Aligned_cols=66 Identities=15% Similarity=0.060 Sum_probs=44.5
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccce
Q 026913 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGC 101 (231)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~ 101 (231)
...|-+|--++..+.+.+ +.+++ ..+++.|-+|||+|++.|.++...| +|.+=+|. +.+ ++++|+
T Consensus 209 aDiI~lDn~~~e~l~~~v-~~l~~--------~~~~~~leasGGI~~~ni~~ya~~G--vD~is~ga-l~~---a~~~Di 273 (277)
T TIGR01334 209 PDILQLDKFTPQQLHHLH-ERLKF--------FDHIPTLAAAGGINPENIADYIEAG--IDLFITSA-PYY---AAPCDI 273 (277)
T ss_pred cCEEEECCCCHHHHHHHH-HHHhc--------cCCCEEEEEECCCCHHHHHHHHhcC--CCEEEeCc-cee---cCccce
Confidence 456777766665554443 34443 2357899999999999999999988 56665553 433 456665
Q ss_pred E
Q 026913 102 V 102 (231)
Q Consensus 102 v 102 (231)
-
T Consensus 274 ~ 274 (277)
T TIGR01334 274 K 274 (277)
T ss_pred E
Confidence 4
No 63
>PRK01130 N-acetylmannosamine-6-phosphate 2-epimerase; Provisional
Probab=82.79 E-value=3.2 Score=35.65 Aligned_cols=34 Identities=15% Similarity=0.194 Sum_probs=30.1
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
++.++++||+ +.+.+.++.+.| .|++.|||.|+.
T Consensus 173 ~iPvia~GGI~t~~~~~~~l~~G--adgV~iGsai~~ 207 (221)
T PRK01130 173 GCPVIAEGRINTPEQAKKALELG--AHAVVVGGAITR 207 (221)
T ss_pred CCCEEEECCCCCHHHHHHHHHCC--CCEEEEchHhcC
Confidence 4579999999 799999999988 689999999876
No 64
>PLN02716 nicotinate-nucleotide diphosphorylase (carboxylating)
Probab=81.68 E-value=12 Score=34.76 Aligned_cols=44 Identities=20% Similarity=0.348 Sum_probs=34.1
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccceEEEE
Q 026913 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKL 105 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~vyKl 105 (231)
.+.|-+|||++++.|.++...|. |..=+|. |+++ .|++|+.+++
T Consensus 262 ~~~lEaSGGIt~~ni~~yA~tGV--D~Is~Ga-lths--a~~~Disl~i 305 (308)
T PLN02716 262 RFETEASGNVTLDTVHKIGQTGV--TYISSGA-LTHS--VKALDISLKI 305 (308)
T ss_pred CceEEEECCCCHHHHHHHHHcCC--CEEEeCc-cccC--CCccceEEEE
Confidence 35699999999999999999995 4444443 4443 6889998887
No 65
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=81.62 E-value=2.8 Score=40.96 Aligned_cols=129 Identities=17% Similarity=0.167 Sum_probs=82.7
Q ss_pred HHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCC-
Q 026913 10 AVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGT- 88 (231)
Q Consensus 10 ~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT- 88 (231)
+.+..|-+.|.+. |=+|+-.=- +..+.+++.+... -|+++.|++.|=-+.+..+.|.+.|+....-|||+
T Consensus 230 ~~a~~Lv~aGvd~--i~~D~a~~~--~~~~~~~i~~ik~-----~~p~~~v~agnv~t~~~a~~l~~aGad~v~vgig~g 300 (479)
T PRK07807 230 AKARALLEAGVDV--LVVDTAHGH--QEKMLEALRAVRA-----LDPGVPIVAGNVVTAEGTRDLVEAGADIVKVGVGPG 300 (479)
T ss_pred HHHHHHHHhCCCE--EEEeccCCc--cHHHHHHHHHHHH-----HCCCCeEEeeccCCHHHHHHHHHcCCCEEEECccCC
Confidence 5566677777665 667873211 4444444444422 35789999999999999999999998777778887
Q ss_pred -----cccccCCCCccceEEEEeEE---CCccccccCCCCCCCCCCcc-ceeEeecCCCCceeeeeeecCCCC
Q 026913 89 -----YLVTCYAQAALGCVFKLVEI---NKQPRIKLSEDVSKVSIPCK-KRSYRLYGKEGYPLVDIMTGENEP 152 (231)
Q Consensus 89 -----~l~~~~~~p~l~~vyKlv~~---~g~p~~K~S~~~~K~t~PG~-K~v~R~~~~~g~~~~D~i~l~~e~ 152 (231)
+.+|....|-+..+|++.+. -|.|++=- |....||. .+.+. ...+..+++.++...+|.
T Consensus 301 sictt~~~~~~~~p~~~av~~~~~~~~~~~~~via~----ggi~~~~~~~~al~-~ga~~v~~g~~~ag~~Es 368 (479)
T PRK07807 301 AMCTTRMMTGVGRPQFSAVLECAAAARELGAHVWAD----GGVRHPRDVALALA-AGASNVMIGSWFAGTYES 368 (479)
T ss_pred cccccccccCCchhHHHHHHHHHHHHHhcCCcEEec----CCCCCHHHHHHHHH-cCCCeeeccHhhccCccC
Confidence 56667778999999998874 25566533 55555652 12222 233444444555555553
No 66
>PRK05581 ribulose-phosphate 3-epimerase; Validated
Probab=81.51 E-value=4.9 Score=34.04 Aligned_cols=36 Identities=17% Similarity=0.334 Sum_probs=31.3
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCC
Q 026913 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (231)
Q Consensus 58 v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~ 95 (231)
..|++.||++++.+.++.+.| +|++=||+.++.+.+
T Consensus 171 ~~i~v~GGI~~~nv~~l~~~G--aD~vvvgSai~~~~d 206 (220)
T PRK05581 171 ILIEVDGGINADNIKECAEAG--ADVFVAGSAVFGAPD 206 (220)
T ss_pred ceEEEECCCCHHHHHHHHHcC--CCEEEEChhhhCCCC
Confidence 578899999999999999888 689999999987543
No 67
>PRK14057 epimerase; Provisional
Probab=80.39 E-value=4.6 Score=36.39 Aligned_cols=36 Identities=25% Similarity=0.293 Sum_probs=30.7
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
|+ ++.|-+-||+++++|..+.+.| +|.|=+|+.+..
T Consensus 191 ~~-~~~IeVDGGI~~~ti~~l~~aG--ad~~V~GSalF~ 226 (254)
T PRK14057 191 RE-GKIIVIDGSLTQDQLPSLIAQG--IDRVVSGSALFR 226 (254)
T ss_pred CC-CceEEEECCCCHHHHHHHHHCC--CCEEEEChHhhC
Confidence 55 5799999999999999999999 567778888764
No 68
>PRK08091 ribulose-phosphate 3-epimerase; Validated
Probab=79.76 E-value=5.4 Score=35.32 Aligned_cols=36 Identities=17% Similarity=0.194 Sum_probs=30.7
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
|+ ++.|-+-||++++.+..+.+.| +|.|=+|+.+..
T Consensus 177 ~~-~~~IeVDGGI~~~ti~~l~~aG--aD~~V~GSalF~ 212 (228)
T PRK08091 177 RV-EKLISIDGSMTLELASYLKQHQ--IDWVVSGSALFS 212 (228)
T ss_pred CC-CceEEEECCCCHHHHHHHHHCC--CCEEEEChhhhC
Confidence 55 4689999999999999999999 567878888765
No 69
>PRK07695 transcriptional regulator TenI; Provisional
Probab=79.67 E-value=2 Score=36.44 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=32.1
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
++.|++.||++++.+.++.+.| .++++||+.+..+.
T Consensus 149 ~ipvia~GGI~~~~~~~~~~~G--a~gvav~s~i~~~~ 184 (201)
T PRK07695 149 SIPVIAIGGITPENTRDVLAAG--VSGIAVMSGIFSSA 184 (201)
T ss_pred CCCEEEEcCCCHHHHHHHHHcC--CCEEEEEHHHhcCC
Confidence 4789999999999999999888 68999999998753
No 70
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=79.59 E-value=3.3 Score=35.97 Aligned_cols=37 Identities=3% Similarity=-0.013 Sum_probs=31.4
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 54 g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
.|++++++.+||++.+.+.++.+.|+ ...|.|+.|+.
T Consensus 141 plp~~~l~ptGGV~~~n~~~~l~ag~--~~~~ggs~l~~ 177 (201)
T PRK06015 141 PLAGTFFCPTGGISLKNARDYLSLPN--VVCVGGSWVAP 177 (201)
T ss_pred hCCCCcEEecCCCCHHHHHHHHhCCC--eEEEEchhhCC
Confidence 68999999999999999999999874 35556887764
No 71
>PRK09722 allulose-6-phosphate 3-epimerase; Provisional
Probab=79.44 E-value=4.8 Score=35.61 Aligned_cols=36 Identities=28% Similarity=0.446 Sum_probs=30.2
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCc-ccc
Q 026913 54 DFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTY-LVT 92 (231)
Q Consensus 54 g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~-l~~ 92 (231)
|+ ++.|-+-||++++.|..+.+.| +|.|=+||+ +..
T Consensus 167 ~~-~~~IeVDGGI~~~~i~~~~~aG--ad~~V~Gss~iF~ 203 (229)
T PRK09722 167 GL-EYLIEVDGSCNQKTYEKLMEAG--ADVFIVGTSGLFN 203 (229)
T ss_pred CC-CeEEEEECCCCHHHHHHHHHcC--CCEEEEChHHHcC
Confidence 55 4799999999999999999999 578878875 653
No 72
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=79.35 E-value=4.1 Score=39.74 Aligned_cols=89 Identities=19% Similarity=0.228 Sum_probs=61.1
Q ss_pred HHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeC-
Q 026913 9 CAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG- 87 (231)
Q Consensus 9 I~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvG- 87 (231)
.+.+.+|-+.|.+. |=+|+-+- -+..+.+++++... -++++-|++.|..+.+.+..|.+.|+.....|+|
T Consensus 227 ~~ra~~Lv~aGVd~--i~~D~a~g--~~~~~~~~i~~i~~-----~~~~~~vi~g~~~t~~~~~~l~~~G~d~i~vg~g~ 297 (475)
T TIGR01303 227 GGKAKALLDAGVDV--LVIDTAHG--HQVKMISAIKAVRA-----LDLGVPIVAGNVVSAEGVRDLLEAGANIIKVGVGP 297 (475)
T ss_pred HHHHHHHHHhCCCE--EEEeCCCC--CcHHHHHHHHHHHH-----HCCCCeEEEeccCCHHHHHHHHHhCCCEEEECCcC
Confidence 35566777777654 66788441 12333444444322 3578899999999999999999999866566666
Q ss_pred -----CcccccCCCCccceEEEEe
Q 026913 88 -----TYLVTCYAQAALGCVFKLV 106 (231)
Q Consensus 88 -----T~l~~~~~~p~l~~vyKlv 106 (231)
|+.++..+.|.+.-+|+++
T Consensus 298 Gs~~ttr~~~~~g~~~~~a~~~~~ 321 (475)
T TIGR01303 298 GAMCTTRMMTGVGRPQFSAVLECA 321 (475)
T ss_pred CccccCccccCCCCchHHHHHHHH
Confidence 5666677778888877774
No 73
>TIGR01163 rpe ribulose-phosphate 3-epimerase. This family consists of Ribulose-phosphate 3-epimerase, also known as pentose-5-phosphate 3-epimerase (PPE). PPE converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. It has been found in a wide range of bacteria, archebacteria, fungi and plants.
Probab=77.90 E-value=5.7 Score=33.20 Aligned_cols=35 Identities=17% Similarity=0.325 Sum_probs=30.5
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 58 v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
+.|++.||++.+.+.++.+.| +|.+-||+.+....
T Consensus 166 ~~i~v~GGI~~env~~l~~~g--ad~iivgsai~~~~ 200 (210)
T TIGR01163 166 ILIEVDGGVNDDNARELAEAG--ADILVAGSAIFGAD 200 (210)
T ss_pred ceEEEECCcCHHHHHHHHHcC--CCEEEEChHHhCCC
Confidence 569999999999999999888 58999999998643
No 74
>cd00429 RPE Ribulose-5-phosphate 3-epimerase (RPE). This enzyme catalyses the interconversion of D-ribulose 5-phosphate (Ru5P) into D-xylulose 5-phosphate, as part of the Calvin cycle (reductive pentose phosphate pathway) in chloroplasts and in the oxidative pentose phosphate pathway. In the Calvin cycle Ru5P is phosphorylated by phosphoribulose kinase to ribulose-1,5-bisphosphate, which in turn is used by RubisCO (ribulose-1,5-bisphosphate carboxylase/oxygenase) to incorporate CO2 as the central step in carbohydrate synthesis.
Probab=77.77 E-value=8.1 Score=32.17 Aligned_cols=36 Identities=25% Similarity=0.350 Sum_probs=31.6
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
++.|++.||++++.+.++.+.| +|++=||+.+++..
T Consensus 166 ~~pi~v~GGI~~env~~~~~~g--ad~iivgsai~~~~ 201 (211)
T cd00429 166 NLLIEVDGGINLETIPLLAEAG--ADVLVAGSALFGSD 201 (211)
T ss_pred CeEEEEECCCCHHHHHHHHHcC--CCEEEECHHHhCCC
Confidence 4689999999999999999888 68899999998754
No 75
>cd02932 OYE_YqiM_FMN Old yellow enzyme (OYE) YqjM-like FMN binding domain. YqjM is involved in the oxidative stress response of Bacillus subtilis. Like the other OYE members, each monomer of YqjM contains FMN as a non-covalently bound cofactor and uses NADPH as a reducing agent. The YqjM enzyme exists as a homotetramer that is assembled as a dimer of catalytically dependent dimers, while other OYE members exist only as monomers or dimers. Moreover, the protein displays a shared active site architecture where an arginine finger at the COOH terminus of one monomer extends into the active site of the adjacent monomer and is directly involved in substrate recognition. Another remarkable difference in the binding of the ligand in YqjM is represented by the contribution of the NH2-terminal tyrosine instead of a COOH-terminal tyrosine in OYE and its homologs.
Probab=77.32 E-value=8.3 Score=35.40 Aligned_cols=76 Identities=18% Similarity=0.268 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHHhcCCCccEEe----e-------CCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHHHHH
Q 026913 5 VPNFCAVALALNDLGYKAVGIR----L-------DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLD 72 (231)
Q Consensus 5 v~naI~va~~l~~~g~~~~gVR----l-------DSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L-de~~i~ 72 (231)
+..++.++++|.+.|..+.-|- . .++....++++++ +. .++.|++.|++ +.+.+.
T Consensus 240 ~~e~~~ia~~Le~~gvd~iev~~g~~~~~~~~~~~~~~~~~~~~~ir----~~---------~~iPVi~~G~i~t~~~a~ 306 (336)
T cd02932 240 LEDSVELAKALKELGVDLIDVSSGGNSPAQKIPVGPGYQVPFAERIR----QE---------AGIPVIAVGLITDPEQAE 306 (336)
T ss_pred HHHHHHHHHHHHHcCCCEEEECCCCCCcccccCCCccccHHHHHHHH----hh---------CCCCEEEeCCCCCHHHHH
Confidence 5667889999988876654431 0 1122222222222 22 24689999998 889999
Q ss_pred HHHhcCCcccEEeeCCcccccC
Q 026913 73 ALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 73 ~l~~~g~~id~fGvGT~l~~~~ 94 (231)
++.++|. +|..++|+.++.+.
T Consensus 307 ~~l~~g~-aD~V~~gR~~i~dP 327 (336)
T cd02932 307 AILESGR-ADLVALGRELLRNP 327 (336)
T ss_pred HHHHcCC-CCeehhhHHHHhCc
Confidence 9998876 79999999998843
No 76
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=76.84 E-value=3.2 Score=39.95 Aligned_cols=90 Identities=27% Similarity=0.273 Sum_probs=58.2
Q ss_pred HHHHHHHHHHhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEE
Q 026913 7 NFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 7 naI~va~~l~~~g~~~~gVRlDS--GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~f 84 (231)
+..+-+.+|.+.|.. .|=+|+ |+- ..+.+.+.+... -|+++.|++.|-++.+.+..+.+.|+....-
T Consensus 224 ~~~~r~~~L~~aG~d--~I~vd~a~g~~----~~~~~~i~~i~~-----~~~~~~vi~G~v~t~~~a~~l~~aGad~i~v 292 (450)
T TIGR01302 224 FDKERAEALVKAGVD--VIVIDSSHGHS----IYVIDSIKEIKK-----TYPDLDIIAGNVATAEQAKALIDAGADGLRV 292 (450)
T ss_pred hHHHHHHHHHHhCCC--EEEEECCCCcH----hHHHHHHHHHHH-----hCCCCCEEEEeCCCHHHHHHHHHhCCCEEEE
Confidence 455666777777754 677888 552 233333333322 2467899999999999999999999644333
Q ss_pred eeC------CcccccCCCCccceEEEEeE
Q 026913 85 GIG------TYLVTCYAQAALGCVFKLVE 107 (231)
Q Consensus 85 GvG------T~l~~~~~~p~l~~vyKlv~ 107 (231)
|+| |..++..+.|.+..++.+.+
T Consensus 293 g~g~G~~~~t~~~~~~g~p~~~~i~~~~~ 321 (450)
T TIGR01302 293 GIGPGSICTTRIVAGVGVPQITAVYDVAE 321 (450)
T ss_pred CCCCCcCCccceecCCCccHHHHHHHHHH
Confidence 443 34444556677777666654
No 77
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=75.92 E-value=6.3 Score=38.31 Aligned_cols=89 Identities=21% Similarity=0.238 Sum_probs=58.2
Q ss_pred HHHHHHHHHhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEe
Q 026913 8 FCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 8 aI~va~~l~~~g~~~~gVRlDS--GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fG 85 (231)
..+.+++|.+.|.+ .|-+|+ |.+..+. ...+.+.+. ++++.|++.|.++.+.+..+.+.|+.....|
T Consensus 229 ~~e~a~~L~~agvd--vivvD~a~g~~~~vl-~~i~~i~~~--------~p~~~vi~g~v~t~e~a~~l~~aGad~i~vg 297 (486)
T PRK05567 229 NEERAEALVEAGVD--VLVVDTAHGHSEGVL-DRVREIKAK--------YPDVQIIAGNVATAEAARALIEAGADAVKVG 297 (486)
T ss_pred hHHHHHHHHHhCCC--EEEEECCCCcchhHH-HHHHHHHhh--------CCCCCEEEeccCCHHHHHHHHHcCCCEEEEC
Confidence 45677888888876 456775 6643332 223333332 3678999999999999999999997554444
Q ss_pred eC------CcccccCCCCccceEEEEeE
Q 026913 86 IG------TYLVTCYAQAALGCVFKLVE 107 (231)
Q Consensus 86 vG------T~l~~~~~~p~l~~vyKlv~ 107 (231)
+| |..++..+.|.+..++++.+
T Consensus 298 ~g~gs~~~~r~~~~~g~p~~~~~~~~~~ 325 (486)
T PRK05567 298 IGPGSICTTRIVAGVGVPQITAIADAAE 325 (486)
T ss_pred CCCCccccceeecCCCcCHHHHHHHHHH
Confidence 44 34444555677777766543
No 78
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=75.75 E-value=5 Score=38.85 Aligned_cols=86 Identities=22% Similarity=0.290 Sum_probs=64.9
Q ss_pred ccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc------c
Q 026913 22 AVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT------C 93 (231)
Q Consensus 22 ~~gVRlDS--GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~------~ 93 (231)
+..|=||| |+-.++...+ +...+ -|++..||++|-..-+-.++|..+|+..---|+|+.=+. .
T Consensus 264 vdvviLDSSqGnS~~qiemi-k~iK~--------~yP~l~ViaGNVVT~~qa~nLI~aGaDgLrVGMGsGSiCiTqevma 334 (503)
T KOG2550|consen 264 VDVVILDSSQGNSIYQLEMI-KYIKE--------TYPDLQIIAGNVVTKEQAANLIAAGADGLRVGMGSGSICITQKVMA 334 (503)
T ss_pred CcEEEEecCCCcchhHHHHH-HHHHh--------hCCCceeeccceeeHHHHHHHHHccCceeEeccccCceeeeceeee
Confidence 45788999 7766655443 34444 379999999999999999999999988777788865443 2
Q ss_pred CCCCccceEEEEeEEC---Ccccccc
Q 026913 94 YAQAALGCVFKLVEIN---KQPRIKL 116 (231)
Q Consensus 94 ~~~p~l~~vyKlv~~~---g~p~~K~ 116 (231)
-++|-...|||+.++. |.|++--
T Consensus 335 ~GrpQ~TAVy~va~~A~q~gvpviAD 360 (503)
T KOG2550|consen 335 CGRPQGTAVYKVAEFANQFGVPCIAD 360 (503)
T ss_pred ccCCcccchhhHHHHHHhcCCceeec
Confidence 3578889999998873 5587743
No 79
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=75.45 E-value=9 Score=37.54 Aligned_cols=92 Identities=18% Similarity=0.278 Sum_probs=58.1
Q ss_pred HHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEe
Q 026913 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 6 ~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fG 85 (231)
+..+..+.+|.+.|....-|=.--|+-... .+..+.+.+. ++++.|++.|-.+.+..+.+.+.|+....-|
T Consensus 240 ~~~~~~~~~l~~ag~d~i~id~a~G~s~~~-~~~i~~ik~~--------~~~~~v~aG~V~t~~~a~~~~~aGad~I~vg 310 (495)
T PTZ00314 240 PEDIERAAALIEAGVDVLVVDSSQGNSIYQ-IDMIKKLKSN--------YPHVDIIAGNVVTADQAKNLIDAGADGLRIG 310 (495)
T ss_pred HHHHHHHHHHHHCCCCEEEEecCCCCchHH-HHHHHHHHhh--------CCCceEEECCcCCHHHHHHHHHcCCCEEEEC
Confidence 455677888888887654443322653332 2333344442 3578999999999999999999997654445
Q ss_pred eCC------cccccCCCCccceEEEEe
Q 026913 86 IGT------YLVTCYAQAALGCVFKLV 106 (231)
Q Consensus 86 vGT------~l~~~~~~p~l~~vyKlv 106 (231)
||. .+++..+.|.+..++++.
T Consensus 311 ~g~Gs~~~t~~~~~~g~p~~~ai~~~~ 337 (495)
T PTZ00314 311 MGSGSICITQEVCAVGRPQASAVYHVA 337 (495)
T ss_pred CcCCcccccchhccCCCChHHHHHHHH
Confidence 542 344455567666555443
No 80
>TIGR01037 pyrD_sub1_fam dihydroorotate dehydrogenase (subfamily 1) family protein. This family includes subfamily 1 dihydroorotate dehydrogenases while excluding the closely related subfamily 2 (TIGR01036). This family also includes a number of uncharacterized proteins and a domain of dihydropyrimidine dehydrogenase. The uncharacterized proteins might all be dihydroorotate dehydrogenase.
Probab=75.02 E-value=12 Score=33.60 Aligned_cols=33 Identities=18% Similarity=0.198 Sum_probs=27.7
Q ss_pred eEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 58 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 58 v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
+.|+++||+ +.+.+.++...| .|+..||+.+..
T Consensus 235 ipvi~~GGI~s~~da~~~l~~G--Ad~V~igr~~l~ 268 (300)
T TIGR01037 235 IPIIGVGGITSFEDALEFLMAG--ASAVQVGTAVYY 268 (300)
T ss_pred CCEEEECCCCCHHHHHHHHHcC--CCceeecHHHhc
Confidence 578999998 788888888888 688889998876
No 81
>PRK04302 triosephosphate isomerase; Provisional
Probab=74.99 E-value=10 Score=32.77 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=30.5
Q ss_pred CCeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 56 ~~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
.++.|++.+|+ +.+.+..+.+.| +|++-|||.++...
T Consensus 172 ~~~pvi~GggI~~~e~~~~~~~~g--adGvlVGsa~l~~~ 209 (223)
T PRK04302 172 PDVKVLCGAGISTGEDVKAALELG--ADGVLLASGVVKAK 209 (223)
T ss_pred CCCEEEEECCCCCHHHHHHHHcCC--CCEEEEehHHhCCc
Confidence 46899999999 677777777777 78999999999753
No 82
>COG0269 SgbH 3-hexulose-6-phosphate synthase and related proteins [Carbohydrate transport and metabolism]
Probab=74.28 E-value=17 Score=32.06 Aligned_cols=36 Identities=11% Similarity=0.235 Sum_probs=32.3
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCC
Q 026913 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (231)
Q Consensus 58 v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~ 95 (231)
++|-+.|||+++.|..+...| .+.|=||..++.+.+
T Consensus 165 ~~vAVaGGI~~~~i~~~~~~~--~~ivIvGraIt~a~d 200 (217)
T COG0269 165 AKVAVAGGITPEDIPLFKGIG--ADIVIVGRAITGAKD 200 (217)
T ss_pred ceEEEecCCCHHHHHHHhcCC--CCEEEECchhcCCCC
Confidence 699999999999999999887 788999999988765
No 83
>PTZ00170 D-ribulose-5-phosphate 3-epimerase; Provisional
Probab=72.79 E-value=28 Score=30.34 Aligned_cols=35 Identities=20% Similarity=0.386 Sum_probs=30.3
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
++.|.+-||++++++..+.+.| +|.|=+|+.+..+
T Consensus 173 ~~~I~VdGGI~~~ti~~~~~aG--ad~iVvGsaI~~a 207 (228)
T PTZ00170 173 HLNIQVDGGINLETIDIAADAG--ANVIVAGSSIFKA 207 (228)
T ss_pred cCeEEECCCCCHHHHHHHHHcC--CCEEEEchHHhCC
Confidence 4789999999999999999999 4788889987653
No 84
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=72.66 E-value=12 Score=32.53 Aligned_cols=72 Identities=15% Similarity=0.085 Sum_probs=47.7
Q ss_pred HHHHHHHHHHhcCCCccEE--eeCCCCh----HHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhc-C
Q 026913 7 NFCAVALALNDLGYKAVGI--RLDSGDL----AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQ-G 78 (231)
Q Consensus 7 naI~va~~l~~~g~~~~gV--RlDSGDl----~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L-de~~i~~l~~~-g 78 (231)
..+..++.|.+.|....-| |..+|.. ..+.++ +. +. .++.++++||+ +.+.+.++.+. |
T Consensus 150 ~~~~~~~~l~~~G~d~i~v~~i~~~g~~~g~~~~~i~~---i~-~~---------~~~pvia~GGi~~~~di~~~l~~~g 216 (243)
T cd04731 150 DAVEWAKEVEELGAGEILLTSMDRDGTKKGYDLELIRA---VS-SA---------VNIPVIASGGAGKPEHFVEAFEEGG 216 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEeccCCCCCCCCCCHHHHHH---HH-hh---------CCCCEEEeCCCCCHHHHHHHHHhCC
Confidence 3566778888888775555 6554432 122222 21 11 35789999999 68899998876 6
Q ss_pred CcccEEeeCCccccc
Q 026913 79 HEVDAFGIGTYLVTC 93 (231)
Q Consensus 79 ~~id~fGvGT~l~~~ 93 (231)
+|+.-||+.|...
T Consensus 217 --~dgv~vg~al~~~ 229 (243)
T cd04731 217 --ADAALAASIFHFG 229 (243)
T ss_pred --CCEEEEeHHHHcC
Confidence 6788899888664
No 85
>PF00834 Ribul_P_3_epim: Ribulose-phosphate 3 epimerase family; InterPro: IPR000056 Ribulose-phosphate 3-epimerase (5.1.3.1 from EC) (also known as pentose-5-phosphate 3-epimerase or PPE) is the enzyme that converts D-ribulose 5-phosphate into D-xylulose 5-phosphate in Calvin's reductive pentose phosphate cycle. In Ralstonia eutropha (Alcaligenes eutrophus) two copies of the gene coding for PPE are known [], one is chromosomally encoded P40117 from SWISSPROT, the other one is on a plasmid Q04539 from SWISSPROT. PPE has been found in a wide range of bacteria, archaebacteria, fungi and plants. All the proteins have from 209 to 241 amino acid residues. The enzyme has a TIM barrel structure.; GO: 0004750 ribulose-phosphate 3-epimerase activity, 0005975 carbohydrate metabolic process; PDB: 3CTL_A 3CT7_D 3CU2_A 1RPX_A 3OVR_A 3OVP_A 3OVQ_B 3QC3_B 3INP_A 1TQJ_D ....
Probab=72.32 E-value=3.6 Score=35.56 Aligned_cols=45 Identities=27% Similarity=0.421 Sum_probs=35.0
Q ss_pred HHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 38 EARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 38 ~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
++|+++.+. | .++.|.+-||++++.+..+.+.| +|.|=+||.+..
T Consensus 155 ~l~~~~~~~-------~-~~~~I~vDGGI~~~~~~~~~~aG--ad~~V~Gs~iF~ 199 (201)
T PF00834_consen 155 ELRKLIPEN-------G-LDFEIEVDGGINEENIKQLVEAG--ADIFVAGSAIFK 199 (201)
T ss_dssp HHHHHHHHH-------T-CGSEEEEESSESTTTHHHHHHHT----EEEESHHHHT
T ss_pred HHHHHHHhc-------C-CceEEEEECCCCHHHHHHHHHcC--CCEEEECHHHhC
Confidence 466666665 5 46799999999999999999999 578878887654
No 86
>COG0036 Rpe Pentose-5-phosphate-3-epimerase [Carbohydrate transport and metabolism]
Probab=72.20 E-value=7.8 Score=34.28 Aligned_cols=36 Identities=28% Similarity=0.399 Sum_probs=31.4
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
++.|-+-||+|.+++..+.++| +|.|=.|+.+-...
T Consensus 169 ~~~IeVDGGI~~~t~~~~~~AG--ad~~VaGSalF~~~ 204 (220)
T COG0036 169 DILIEVDGGINLETIKQLAAAG--ADVFVAGSALFGAD 204 (220)
T ss_pred CeEEEEeCCcCHHHHHHHHHcC--CCEEEEEEEEeCCc
Confidence 7899999999999999999999 57888888776643
No 87
>PRK08508 biotin synthase; Provisional
Probab=71.12 E-value=34 Score=30.70 Aligned_cols=74 Identities=15% Similarity=0.145 Sum_probs=41.1
Q ss_pred HHHHHHHHHHHhcCCCccEEeeCCCCh--HHHHHHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCccc
Q 026913 6 PNFCAVALALNDLGYKAVGIRLDSGDL--AYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVD 82 (231)
Q Consensus 6 ~naI~va~~l~~~g~~~~gVRlDSGDl--~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S-~~Lde~~i~~l~~~g~~id 82 (231)
...++.++++++.|.+-..+ .+||.- ......+.++++.+.. -+.++.+++| |-++++.+++|.+.| .|
T Consensus 43 eeI~~~a~~a~~~g~~~~~l-v~sg~~~~~~~~e~~~ei~~~ik~-----~~p~l~i~~s~G~~~~e~l~~Lk~aG--ld 114 (279)
T PRK08508 43 EQIVQEAKMAKANGALGFCL-VTSGRGLDDKKLEYVAEAAKAVKK-----EVPGLHLIACNGTASVEQLKELKKAG--IF 114 (279)
T ss_pred HHHHHHHHHHHHCCCCEEEE-EeccCCCCcccHHHHHHHHHHHHh-----hCCCcEEEecCCCCCHHHHHHHHHcC--CC
Confidence 45566677776677643333 355541 1111222333333211 1246677655 667999999999999 46
Q ss_pred EEeeC
Q 026913 83 AFGIG 87 (231)
Q Consensus 83 ~fGvG 87 (231)
++.++
T Consensus 115 ~~~~~ 119 (279)
T PRK08508 115 SYNHN 119 (279)
T ss_pred EEccc
Confidence 66654
No 88
>PRK04180 pyridoxal biosynthesis lyase PdxS; Provisional
Probab=70.88 E-value=22 Score=32.81 Aligned_cols=74 Identities=14% Similarity=0.232 Sum_probs=51.4
Q ss_pred cCCCccEEeeC----CCChHHHHHHHHHHHHHHhHhhCCCC----------------------CCCeEEE--EeCCC-CH
Q 026913 18 LGYKAVGIRLD----SGDLAYLSCEARKFFRTIEKEFGVPD----------------------FEKMSIT--ASNDL-NE 68 (231)
Q Consensus 18 ~g~~~~gVRlD----SGDl~~ls~~~r~~ld~~~~~l~~~g----------------------~~~v~I~--~S~~L-de 68 (231)
.|..+ ||.= |||..+-.+.+|.+..+.+.-.+... ..++.|+ +.||+ ++
T Consensus 140 ~Gadm--I~Ttge~gtg~v~~av~h~r~~~~~i~~L~gyt~~~~~~~a~~~~~~~elL~ei~~~~~iPVV~~AeGGI~TP 217 (293)
T PRK04180 140 EGAAM--IRTKGEAGTGNVVEAVRHMRQINGEIRRLTSMSEDELYTAAKELQAPYELVKEVAELGRLPVVNFAAGGIATP 217 (293)
T ss_pred CCCCe--eeccCCCCCccHHHHHHHHHHHHHHHHHHhCCCHHHHHhhccccCCCHHHHHHHHHhCCCCEEEEEeCCCCCH
Confidence 35443 5555 89988888888888777644332211 0135665 88999 99
Q ss_pred HHHHHHHhcCCcccEEeeCCcccccCC
Q 026913 69 ETLDALNKQGHEVDAFGIGTYLVTCYA 95 (231)
Q Consensus 69 ~~i~~l~~~g~~id~fGvGT~l~~~~~ 95 (231)
+.+..+.+.| .++.-||+.+..+.+
T Consensus 218 edaa~vme~G--AdgVaVGSaI~ks~d 242 (293)
T PRK04180 218 ADAALMMQLG--ADGVFVGSGIFKSGD 242 (293)
T ss_pred HHHHHHHHhC--CCEEEEcHHhhcCCC
Confidence 9999998888 578889999986543
No 89
>PF01645 Glu_synthase: Conserved region in glutamate synthase; InterPro: IPR002932 Ferredoxin-dependent glutamate synthases have been implicated in a number of functions including photorespiration in Arabidopsis where they may also play a role in primary nitrogen assimilation in roots []. This region is expressed as a seperate subunit in the glutamate synthase alpha subunit from archaebacteria, or part of a large multidomain enzyme in other organisms. The aligned region of these proteins contains a putative FMN binding site and Fe-S cluster.; GO: 0015930 glutamate synthase activity, 0016638 oxidoreductase activity, acting on the CH-NH2 group of donors, 0006537 glutamate biosynthetic process, 0055114 oxidation-reduction process; PDB: 1EA0_A 2VDC_E 1OFE_A 1LLW_A 1OFD_A 1LLZ_A 1LM1_A.
Probab=68.87 E-value=6.7 Score=37.16 Aligned_cols=55 Identities=27% Similarity=0.349 Sum_probs=37.2
Q ss_pred HHHHHHHHHHHHhHhhCCCCCCC-eEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccccCCCCccceEE
Q 026913 35 LSCEARKFFRTIEKEFGVPDFEK-MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVF 103 (231)
Q Consensus 35 ls~~~r~~ld~~~~~l~~~g~~~-v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~vy 103 (231)
...++.+.|++. |+.+ |++++||+| ++..+.+...-|+ |.+++||.+.- +++|++
T Consensus 258 ~l~~a~~~L~~~-------glr~~V~Li~sGgl~t~~dv~kalaLGA--D~v~igt~~li-----AlGC~~ 314 (368)
T PF01645_consen 258 ALARAHQALVKN-------GLRDRVSLIASGGLRTGDDVAKALALGA--DAVYIGTAALI-----ALGCIQ 314 (368)
T ss_dssp HHHHHHHHHHCT-------T-CCCSEEEEESS--SHHHHHHHHHCT---SEEE-SHHHHH-----HCT--S
T ss_pred HHHHHHHHHHHc-------CCCCceEEEEeCCccCHHHHHHHHhcCC--CeeEecchhhh-----hcchHH
Confidence 344567777775 7665 999999998 5677777777885 89999999877 466664
No 90
>PRK13307 bifunctional formaldehyde-activating enzyme/3-hexulose-6-phosphate synthase; Provisional
Probab=68.32 E-value=16 Score=34.95 Aligned_cols=36 Identities=17% Similarity=0.317 Sum_probs=31.5
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
++.|.++||++.+.+..+.+.| .|.|-+|+.+..+.
T Consensus 330 ~~~I~VdGGI~~eti~~l~~aG--ADivVVGsaIf~a~ 365 (391)
T PRK13307 330 KILVAVAGGVRVENVEEALKAG--ADILVVGRAITKSK 365 (391)
T ss_pred CCcEEEECCcCHHHHHHHHHcC--CCEEEEeHHHhCCC
Confidence 5789999999999999999988 57899999987643
No 91
>PLN02334 ribulose-phosphate 3-epimerase
Probab=67.84 E-value=7.5 Score=33.70 Aligned_cols=35 Identities=14% Similarity=0.322 Sum_probs=30.9
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
+..|++-||++++.+.++.+.| +|++=||+.+..+
T Consensus 174 ~~~I~a~GGI~~e~i~~l~~aG--ad~vvvgsai~~~ 208 (229)
T PLN02334 174 ELDIEVDGGVGPSTIDKAAEAG--ANVIVAGSAVFGA 208 (229)
T ss_pred CCcEEEeCCCCHHHHHHHHHcC--CCEEEEChHHhCC
Confidence 4579999999999999999998 6899999998764
No 92
>cd02803 OYE_like_FMN_family Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=67.48 E-value=32 Score=31.04 Aligned_cols=36 Identities=19% Similarity=0.380 Sum_probs=28.6
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCccccc
Q 026913 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
++.|+++|++. .+.+.++.+.|. +|..++|+.++..
T Consensus 281 ~iPVi~~Ggi~t~~~a~~~l~~g~-aD~V~igR~~lad 317 (327)
T cd02803 281 KIPVIAVGGIRDPEVAEEILAEGK-ADLVALGRALLAD 317 (327)
T ss_pred CCCEEEeCCCCCHHHHHHHHHCCC-CCeeeecHHHHhC
Confidence 46789999987 888888887743 6888899888774
No 93
>PRK07028 bifunctional hexulose-6-phosphate synthase/ribonuclease regulator; Validated
Probab=67.16 E-value=22 Score=33.79 Aligned_cols=35 Identities=20% Similarity=0.315 Sum_probs=31.7
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 58 v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
+.|++.||++.+.+.++.+.| ++.+.+|+.+....
T Consensus 163 iPI~a~GGI~~~n~~~~l~aG--Adgv~vGsaI~~~~ 197 (430)
T PRK07028 163 IPIAVAGGLDAETAAKAVAAG--ADIVIVGGNIIKSA 197 (430)
T ss_pred CcEEEECCCCHHHHHHHHHcC--CCEEEEChHHcCCC
Confidence 689999999999999999999 58999999998754
No 94
>PRK07259 dihydroorotate dehydrogenase 1B; Reviewed
Probab=66.96 E-value=22 Score=31.94 Aligned_cols=34 Identities=18% Similarity=0.200 Sum_probs=29.8
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
++.|+++||+ +.+.+.++...| .|...|||.++.
T Consensus 234 ~ipvi~~GGI~~~~da~~~l~aG--Ad~V~igr~ll~ 268 (301)
T PRK07259 234 DIPIIGMGGISSAEDAIEFIMAG--ASAVQVGTANFY 268 (301)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCceeEcHHHhc
Confidence 4679999998 899999998888 589999999887
No 95
>TIGR02129 hisA_euk phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase, eukaryotic type. This enzyme acts in the biosynthesis of histidine and has been characterized in S. cerevisiae and Arabidopsis where it complements the E. coli HisA gene. In eukaryotes the gene is known as HIS6. In bacteria, this gene is found in Fibrobacter succinogenes, presumably due to lateral gene transfer from plants in the rumen gut.
Probab=65.76 E-value=29 Score=31.22 Aligned_cols=69 Identities=17% Similarity=0.150 Sum_probs=50.8
Q ss_pred HHHHHHHHhcCCCc-cEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeC
Q 026913 9 CAVALALNDLGYKA-VGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 9 I~va~~l~~~g~~~-~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvG 87 (231)
+.+|+..++.|.++ .-|=| |.. ...-++++..+ ..+.|.+.||+..+.++++.+.| ++..+||
T Consensus 41 ~~~A~~~~~~Ga~~lHvVDL--g~~--n~~~i~~i~~~----------~~~~v~vGGGIr~e~v~~~l~aG--a~rVvIG 104 (253)
T TIGR02129 41 SYYAKLYKDDGVKGCHVIML--GPN--NDDAAKEALHA----------YPGGLQVGGGINDTNAQEWLDEG--ASHVIVT 104 (253)
T ss_pred HHHHHHHHHcCCCEEEEEEC--CCC--cHHHHHHHHHh----------CCCCEEEeCCcCHHHHHHHHHcC--CCEEEEC
Confidence 56777777888653 45555 554 22334445544 34689999999999999999999 6789999
Q ss_pred Cccccc
Q 026913 88 TYLVTC 93 (231)
Q Consensus 88 T~l~~~ 93 (231)
|.+++.
T Consensus 105 S~av~~ 110 (253)
T TIGR02129 105 SWLFTK 110 (253)
T ss_pred cHHHhC
Confidence 999874
No 96
>PRK13125 trpA tryptophan synthase subunit alpha; Provisional
Probab=65.29 E-value=7.3 Score=34.22 Aligned_cols=33 Identities=18% Similarity=0.230 Sum_probs=29.3
Q ss_pred eEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 58 MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 58 v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
..|++.+|+ +.+.+..+.+.| .|+|=|||.++.
T Consensus 186 ~~i~v~gGI~~~e~i~~~~~~g--aD~vvvGSai~~ 219 (244)
T PRK13125 186 KYLVVGFGLDSPEDARDALSAG--ADGVVVGTAFIE 219 (244)
T ss_pred CCEEEeCCcCCHHHHHHHHHcC--CCEEEECHHHHH
Confidence 358999999 999999998888 689999999986
No 97
>cd04740 DHOD_1B_like Dihydroorotate dehydrogenase (DHOD) class 1B FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively.
Probab=64.61 E-value=42 Score=29.96 Aligned_cols=35 Identities=17% Similarity=0.181 Sum_probs=30.4
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
++.|+++||+ |.+.+.++...| .|..+|||.++..
T Consensus 231 ~ipii~~GGI~~~~da~~~l~~G--Ad~V~igra~l~~ 266 (296)
T cd04740 231 EIPIIGVGGIASGEDALEFLMAG--ASAVQVGTANFVD 266 (296)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCEEEEchhhhcC
Confidence 5689999999 789999998889 5899999999873
No 98
>PF00733 Asn_synthase: Asparagine synthase; InterPro: IPR001962 This domain is always found associated with (IPR000583 from INTERPRO). Family members that contain this domain catalyse the conversion of aspartate to asparagine. Asparagine synthetase B (6.3.5.4 from EC) catalyzes the assembly of asparagine from aspartate, Mg(2+)ATP, and glutamine. The three-dimensional architecture of the N-terminal domain of asparagine synthetase B is similar to that observed for glutamine phosphoribosylpyrophosphate amidotransferase while the molecular motif of the C-domain is reminiscent to that observed for GMP synthetase [].; GO: 0004066 asparagine synthase (glutamine-hydrolyzing) activity, 0006529 asparagine biosynthetic process; PDB: 1JGT_A 1M1Z_B 1MB9_B 1MBZ_B 1MC1_A 1Q15_D 1Q19_C 1CT9_C 3K32_F.
Probab=63.84 E-value=9.8 Score=32.11 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=37.6
Q ss_pred HHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHHhc--CCcccEEeeCCcccc
Q 026913 38 EARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQ--GHEVDAFGIGTYLVT 92 (231)
Q Consensus 38 ~~r~~ld~~-~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~--g~~id~fGvGT~l~~ 92 (231)
++|+.|+++ ..++. .-..+-|..|||+|=-.|..+... +.++.+|-+|..-..
T Consensus 1 ~~r~~l~~av~~rl~--~~~~i~~~LSGGlDSs~i~~~~~~~~~~~~~~~t~~~~~~~ 56 (255)
T PF00733_consen 1 ELRELLEEAVARRLR--SDKPIGILLSGGLDSSAIAALAARQGGPPIKTFTIGFEDDD 56 (255)
T ss_dssp HHHHHHHHHHHHHCG--CTSEEEEE--SSHHHHHHHHHHHHTCCSEEEEEEEECSSCC
T ss_pred CHHHHHHHHHHHHHh--cCCCEEEECCCChhHHHHHHHHHHhhCCceeEEEEEcCCCc
Confidence 356777777 44343 235688999999999999999876 568888888876655
No 99
>cd04734 OYE_like_3_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 3. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase. One member of this subgroup, the Sinorhizobium meliloti stachydrine utilization protein stcD, has been idenified as a putative N-methylproline demethylase.
Probab=63.60 E-value=26 Score=32.50 Aligned_cols=37 Identities=11% Similarity=0.216 Sum_probs=30.8
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
++.|+++|++ +.+.+.++.+.|. +|..++|..++...
T Consensus 285 ~ipvi~~G~i~~~~~~~~~l~~~~-~D~V~~gR~~ladP 322 (343)
T cd04734 285 DLPVFHAGRIRDPAEAEQALAAGH-ADMVGMTRAHIADP 322 (343)
T ss_pred CCCEEeeCCCCCHHHHHHHHHcCC-CCeeeecHHhHhCc
Confidence 4579999998 8899999987764 79999999998853
No 100
>PRK00278 trpC indole-3-glycerol-phosphate synthase; Reviewed
Probab=63.27 E-value=26 Score=31.22 Aligned_cols=36 Identities=28% Similarity=0.385 Sum_probs=28.7
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCC
Q 026913 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYA 95 (231)
Q Consensus 58 v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~ 95 (231)
..|..||..+.+.+.++.+.| .|++-|||.++.+.+
T Consensus 213 ~vIaegGI~t~ed~~~~~~~G--ad~vlVGsaI~~~~d 248 (260)
T PRK00278 213 LVVSESGIFTPEDLKRLAKAG--ADAVLVGESLMRADD 248 (260)
T ss_pred EEEEEeCCCCHHHHHHHHHcC--CCEEEECHHHcCCCC
Confidence 345555666899999999988 589999999998644
No 101
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=63.19 E-value=18 Score=35.67 Aligned_cols=95 Identities=16% Similarity=0.267 Sum_probs=62.9
Q ss_pred chHHHHHHHHHHHhcCCCccEEeeCCCCh-HHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCccc
Q 026913 4 GVPNFCAVALALNDLGYKAVGIRLDSGDL-AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVD 82 (231)
Q Consensus 4 Gv~naI~va~~l~~~g~~~~gVRlDSGDl-~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id 82 (231)
|...+.+.+.+|-+.|..+ |=+||-.- .....++.+.+.+. ++ .++.|++.|=++.+..+.+.+.|+...
T Consensus 239 ~~~~~~~ra~~Lv~aGvd~--i~vd~a~g~~~~~~~~i~~ir~~---~~----~~~~V~aGnV~t~e~a~~li~aGAd~I 309 (502)
T PRK07107 239 NTRDYAERVPALVEAGADV--LCIDSSEGYSEWQKRTLDWIREK---YG----DSVKVGAGNVVDREGFRYLAEAGADFV 309 (502)
T ss_pred ChhhHHHHHHHHHHhCCCe--EeecCcccccHHHHHHHHHHHHh---CC----CCceEEeccccCHHHHHHHHHcCCCEE
Confidence 4456778888888888665 44676221 11122333334332 21 348999999999999999999998665
Q ss_pred EEeeCCc------ccccCCCCccceEEEEeE
Q 026913 83 AFGIGTY------LVTCYAQAALGCVFKLVE 107 (231)
Q Consensus 83 ~fGvGT~------l~~~~~~p~l~~vyKlv~ 107 (231)
--|+|.. .+++...|.+..+|++.+
T Consensus 310 ~vg~g~Gs~c~tr~~~~~g~~~~~ai~~~~~ 340 (502)
T PRK07107 310 KVGIGGGSICITREQKGIGRGQATALIEVAK 340 (502)
T ss_pred EECCCCCcCcccccccCCCccHHHHHHHHHH
Confidence 5677755 455566777878877665
No 102
>cd00331 IGPS Indole-3-glycerol phosphate synthase (IGPS); an enzyme in the tryptophan biosynthetic pathway, catalyzing the ring closure reaction of 1-(o-carboxyphenylamino)-1-deoxyribulose-5-phosphate (CdRP) to indole-3-glycerol phosphate (IGP), accompanied by the release of carbon dioxide and water. IGPS is active as a separate monomer in most organisms, but is also found fused to other enzymes as part of a bifunctional or multifunctional enzyme involved in tryptophan biosynthesis.
Probab=62.56 E-value=34 Score=29.09 Aligned_cols=37 Identities=22% Similarity=0.368 Sum_probs=31.1
Q ss_pred CCeEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 56 ~~v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
.++.+++++|+. .+.+.++.+.| .+++-||+.|+...
T Consensus 171 ~~~pvia~gGI~s~edi~~~~~~G--a~gvivGsai~~~~ 208 (217)
T cd00331 171 KDVILVSESGISTPEDVKRLAEAG--ADAVLIGESLMRAP 208 (217)
T ss_pred CCCEEEEEcCCCCHHHHHHHHHcC--CCEEEECHHHcCCC
Confidence 356899999995 59999999988 58999999998754
No 103
>PRK09426 methylmalonyl-CoA mutase; Reviewed
Probab=62.52 E-value=32 Score=35.45 Aligned_cols=69 Identities=16% Similarity=0.205 Sum_probs=50.4
Q ss_pred HhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 16 NDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 16 ~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
.+.|..+.+|=-=.++-..+...+.+.|+++ |.++++|++.|.+=++....+.+.|+ -..|.+|+++..
T Consensus 630 ~~~~a~ivvlcs~d~~~~e~~~~l~~~Lk~~-------G~~~v~vl~GG~~~~~~~~~l~~aGv-D~~i~~g~d~~~ 698 (714)
T PRK09426 630 VENDVHVVGVSSLAAGHKTLVPALIEALKKL-------GREDIMVVVGGVIPPQDYDFLYEAGV-AAIFGPGTVIAD 698 (714)
T ss_pred HHcCCCEEEEeccchhhHHHHHHHHHHHHhc-------CCCCcEEEEeCCCChhhHHHHHhCCC-CEEECCCCCHHH
Confidence 3445556666433356666788888889987 88889999998866666688888885 357789988754
No 104
>PTZ00441 sporozoite surface protein 2 (SSP2); Provisional
Probab=61.87 E-value=25 Score=35.31 Aligned_cols=36 Identities=17% Similarity=0.298 Sum_probs=28.2
Q ss_pred CCCCeEEEEeCCCCH------HHHHHHHhcCCcccEEeeCCc
Q 026913 54 DFEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 54 g~~~v~I~~S~~Lde------~~i~~l~~~g~~id~fGvGT~ 89 (231)
...++.|++|+|.+. +.++.|.+.|+.+-++|||..
T Consensus 148 nvpKVVILLTDG~sns~~dvleaAq~LR~~GVeI~vIGVG~g 189 (576)
T PTZ00441 148 NAIQLVILMTDGIPNSKYRALEESRKLKDRNVKLAVIGIGQG 189 (576)
T ss_pred CCceEEEEEecCCCCCcccHHHHHHHHHHCCCEEEEEEeCCC
Confidence 345799999999962 235677788999999999973
No 105
>cd02933 OYE_like_FMN Old yellow enzyme (OYE)-like FMN binding domain. OYE was the first flavin-dependent enzyme identified, however its true physiological role remains elusive to this day. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Members of OYE family include 12-oxophytodienoate reductase, pentaerythritol tetranitrate reductase, morphinone reductase, and related enzymes.
Probab=61.72 E-value=37 Score=31.46 Aligned_cols=36 Identities=19% Similarity=0.311 Sum_probs=30.2
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
++.|+++|+++.+.+.++.+.|. +|..++|..++..
T Consensus 285 ~ipvi~~G~i~~~~a~~~l~~g~-~D~V~~gR~~lad 320 (338)
T cd02933 285 KGPLIAAGGYDAESAEAALADGK-ADLVAFGRPFIAN 320 (338)
T ss_pred CCCEEEECCCCHHHHHHHHHcCC-CCEEEeCHhhhhC
Confidence 35799999999999999888765 7899999988874
No 106
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=61.03 E-value=31 Score=29.67 Aligned_cols=32 Identities=13% Similarity=0.176 Sum_probs=25.0
Q ss_pred CeEEEEeCCCC-HHHHHH-HHhcCCcccEEeeCCcc
Q 026913 57 KMSITASNDLN-EETLDA-LNKQGHEVDAFGIGTYL 90 (231)
Q Consensus 57 ~v~I~~S~~Ld-e~~i~~-l~~~g~~id~fGvGT~l 90 (231)
++.|+++||+. .+.+.+ +.+.| +++.-|||.|
T Consensus 197 ~ipvia~GGi~s~~di~~~l~~~g--adgV~vg~a~ 230 (232)
T TIGR03572 197 SIPVIALGGAGSLDDLVEVALEAG--ASAVAAASLF 230 (232)
T ss_pred CCCEEEECCCCCHHHHHHHHHHcC--CCEEEEehhh
Confidence 46899999987 677777 66667 6788888875
No 107
>cd04733 OYE_like_2_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 2. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.73 E-value=42 Score=30.84 Aligned_cols=37 Identities=16% Similarity=0.275 Sum_probs=28.7
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
++.|++++++ +.+.+.++.++|. .|..++|..++.+.
T Consensus 292 ~iPVi~~G~i~t~~~a~~~l~~g~-aD~V~lgR~~iadP 329 (338)
T cd04733 292 KTPLMVTGGFRTRAAMEQALASGA-VDGIGLARPLALEP 329 (338)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCC-CCeeeeChHhhhCc
Confidence 4578888888 6888888888765 68888888887743
No 108
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=60.68 E-value=38 Score=32.58 Aligned_cols=91 Identities=15% Similarity=0.192 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEe
Q 026913 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 6 ~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fG 85 (231)
+...+-+.+|-+.|..+ |=+|+.+.- +..+.+.+.+... -++++.|++.|-.+.+....+.+.|+.....|
T Consensus 152 ~~~~~~v~~lv~aGvDv--I~iD~a~g~--~~~~~~~v~~ik~-----~~p~~~vi~g~V~T~e~a~~l~~aGaD~I~vG 222 (404)
T PRK06843 152 IDTIERVEELVKAHVDI--LVIDSAHGH--STRIIELVKKIKT-----KYPNLDLIAGNIVTKEAALDLISVGADCLKVG 222 (404)
T ss_pred HHHHHHHHHHHhcCCCE--EEEECCCCC--ChhHHHHHHHHHh-----hCCCCcEEEEecCCHHHHHHHHHcCCCEEEEC
Confidence 45566778888888765 445885531 3333333433322 25678899999999999999999997654455
Q ss_pred eCC------cccccCCCCccceEEEE
Q 026913 86 IGT------YLVTCYAQAALGCVFKL 105 (231)
Q Consensus 86 vGT------~l~~~~~~p~l~~vyKl 105 (231)
+|. +.++..+.|.+..++.+
T Consensus 223 ~g~Gs~c~tr~~~g~g~p~ltai~~v 248 (404)
T PRK06843 223 IGPGSICTTRIVAGVGVPQITAICDV 248 (404)
T ss_pred CCCCcCCcceeecCCCCChHHHHHHH
Confidence 542 33444445655544433
No 109
>cd04735 OYE_like_4_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 4. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=60.53 E-value=19 Score=33.43 Aligned_cols=74 Identities=16% Similarity=0.148 Sum_probs=49.5
Q ss_pred hHHHHHHHHHHHhcCCCccEEeeCCCC-----------hHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHHHHH
Q 026913 5 VPNFCAVALALNDLGYKAVGIRLDSGD-----------LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLD 72 (231)
Q Consensus 5 v~naI~va~~l~~~g~~~~gVRlDSGD-----------l~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L-de~~i~ 72 (231)
...++.+++.|.+.|..+..| ..|. ...+... +.++ + . .++.|+++|++ |.+.+.
T Consensus 234 ~ee~~~i~~~L~~~GvD~I~V--s~g~~~~~~~~~~~~~~~~~~~----ik~~---~---~-~~iPVi~~Ggi~t~e~ae 300 (353)
T cd04735 234 MEDTLALVDKLADKGLDYLHI--SLWDFDRKSRRGRDDNQTIMEL----VKER---I---A-GRLPLIAVGSINTPDDAL 300 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEe--ccCccccccccCCcchHHHHHH----HHHH---h---C-CCCCEEEECCCCCHHHHH
Confidence 467788899998888665443 1111 1112222 2222 1 1 35689999999 899999
Q ss_pred HHHhcCCcccEEeeCCccccc
Q 026913 73 ALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 73 ~l~~~g~~id~fGvGT~l~~~ 93 (231)
++.+.| +|..++|..++..
T Consensus 301 ~~l~~g--aD~V~~gR~liad 319 (353)
T cd04735 301 EALETG--ADLVAIGRGLLVD 319 (353)
T ss_pred HHHHcC--CChHHHhHHHHhC
Confidence 998886 7999999999874
No 110
>PRK10605 N-ethylmaleimide reductase; Provisional
Probab=60.45 E-value=31 Score=32.29 Aligned_cols=43 Identities=21% Similarity=0.278 Sum_probs=33.3
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccceEEEEe
Q 026913 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLV 106 (231)
Q Consensus 58 v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~vyKlv 106 (231)
+.|+++|+++.+.+++++++|. .|.-|+|..++.+ | +++-|+.
T Consensus 293 ~pv~~~G~~~~~~ae~~i~~G~-~D~V~~gR~~iad---P--d~~~k~~ 335 (362)
T PRK10605 293 GVIIGAGAYTAEKAETLIGKGL-IDAVAFGRDYIAN---P--DLVARLQ 335 (362)
T ss_pred CCEEEeCCCCHHHHHHHHHcCC-CCEEEECHHhhhC---c--cHHHHHh
Confidence 3688888899999999998876 6889999988884 3 5555553
No 111
>cd02801 DUS_like_FMN Dihydrouridine synthase-like (DUS-like) FMN-binding domain. Members of this family catalyze the reduction of the 5,6-double bond of a uridine residue on tRNA. Dihydrouridine modification of tRNA is widely observed in prokaryotes and eukaryotes, and also in some archaea. Most dihydrouridines are found in the D loop of t-RNAs. The role of dihydrouridine in tRNA is currently unknown, but may increase conformational flexibility of the tRNA. It is likely that different family members have different substrate specificities, which may overlap. 1VHN, a putative flavin oxidoreductase, has high sequence similarity to DUS. The enzymatic mechanism of 1VHN is not known at the present.
Probab=60.03 E-value=49 Score=27.99 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=30.2
Q ss_pred CCeEEEEeCCC-CHHHHHHHHhc-CCcccEEeeCCccccc
Q 026913 56 EKMSITASNDL-NEETLDALNKQ-GHEVDAFGIGTYLVTC 93 (231)
Q Consensus 56 ~~v~I~~S~~L-de~~i~~l~~~-g~~id~fGvGT~l~~~ 93 (231)
.++.|+++||+ +.+.+.++.+. | +|+..+|+.+...
T Consensus 182 ~~ipvi~~Ggi~~~~d~~~~l~~~g--ad~V~igr~~l~~ 219 (231)
T cd02801 182 VSIPVIANGDIFSLEDALRCLEQTG--VDGVMIGRGALGN 219 (231)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHhcC--CCEEEEcHHhHhC
Confidence 46789999999 78899998876 5 6899999988774
No 112
>cd02812 PcrB_like PcrB_like proteins. One member of this family, a protein from Archaeoglobus fulgidus, has been characterized as a (S)-3-O-geranylgeranylglyceryl phosphate synthase (AfGGGPS). AfGGGPS catalyzes the formation of an ether linkage between sn-glycerol-1-phosphate (G1P) and geranylgeranyl diphosphate (GGPP), the committed step in archaeal lipid biosynthesis. Therefore, it has been proposed that PcrB-like proteins are either prenyltransferases or are involved in lipoteichoic acid biosynthesis although the exact function is still unknown.
Probab=59.49 E-value=42 Score=29.51 Aligned_cols=70 Identities=20% Similarity=0.285 Sum_probs=45.3
Q ss_pred HHHHHHHhcCCCccEEeeC-CCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCCcccEEeeC
Q 026913 10 AVALALNDLGYKAVGIRLD-SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 10 ~va~~l~~~g~~~~gVRlD-SGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L-de~~i~~l~~~g~~id~fGvG 87 (231)
+-|++.+.+|.+ -|=+| ||.. ...+..+.+.+. ..++.|++.||+ +.+.++++.+.| .|..-||
T Consensus 139 ayA~aae~~g~~--ivyLe~SG~~--~~~e~I~~v~~~--------~~~~pl~vGGGIrs~e~a~~l~~aG--AD~VVVG 204 (219)
T cd02812 139 AYALAAEYLGMP--IVYLEYSGAY--GPPEVVRAVKKV--------LGDTPLIVGGGIRSGEQAKEMAEAG--ADTIVVG 204 (219)
T ss_pred HHHHHHHHcCCe--EEEeCCCCCc--CCHHHHHHHHHh--------cCCCCEEEeCCCCCHHHHHHHHHcC--CCEEEEC
Confidence 345555666744 45556 5543 222223333332 115689999999 889999999888 5788899
Q ss_pred Cccccc
Q 026913 88 TYLVTC 93 (231)
Q Consensus 88 T~l~~~ 93 (231)
|.+.+.
T Consensus 205 sai~~~ 210 (219)
T cd02812 205 NIVEED 210 (219)
T ss_pred chhhCC
Confidence 998874
No 113
>cd00311 TIM Triosephosphate isomerase (TIM) is a glycolytic enzyme that catalyzes the interconversion of dihydroxyacetone phosphate and D-glyceraldehyde-3-phosphate. The reaction is very efficient and requires neither cofactors nor metal ions. TIM, usually homodimeric, but in some organisms tetrameric, is ubiqitous and conserved in function across eukaryotes, bacteria and archaea.
Probab=57.97 E-value=30 Score=30.81 Aligned_cols=54 Identities=22% Similarity=0.283 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 34 ~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
+....+|+.+.+. ++- --.+++|+..|+++.+-+.+|.+++ .+|++.||+.-..
T Consensus 180 ev~~~ir~~l~~~---~~~-~~~~~~IlYGGSV~~~N~~~l~~~~-~vDG~LVG~Asl~ 233 (242)
T cd00311 180 EVHAFIRKLLAEL---YGE-VAEKVRILYGGSVNPENAAELLAQP-DIDGVLVGGASLK 233 (242)
T ss_pred HHHHHHHHHHHHh---ccc-ccCceeEEECCCCCHHHHHHHhcCC-CCCEEEeehHhhC
Confidence 3334456665553 221 2357999999999999999999875 4899999987653
No 114
>PF00478 IMPDH: IMP dehydrogenase / GMP reductase domain; InterPro: IPR001093 Synonym(s): Inosine-5'-monophosphate dehydrogenase, Inosinic acid dehydrogenase; Synonym(s): Guanosine 5'-monophosphate oxidoreductase This entry contains two related enzymes IMP dehydrogenase and GMP reducatase. These enzymes adopt a TIM barrel structure. IMP dehydrogenase (1.1.1.205 from EC) (IMPDH) catalyzes the rate-limiting reaction of de novo GTP biosynthesis, the NAD-dependent reduction of IMP into XMP []. Inosine 5-phosphate + NAD+ + H2O = xanthosine 5-phosphate + NADH IMP dehydrogenase is associated with cell proliferation and is a possible target for cancer chemotherapy. Mammalian and bacterial IMPDHs are tetramers of identical chains. There are two IMP dehydrogenase isozymes in humans []. IMP dehydrogenase nearly always contains a long insertion that has two CBS domains within it. GMP reductase (1.7.1.7 from EC) catalyzes the irreversible and NADPH-dependent reductive deamination of GMP into IMP []. NADPH + guanosine 5-phosphate = NADP+ + inosine 5-phosphate + NH3 It converts nucleobase, nucleoside and nucleotide derivatives of G to A nucleotides, and maintains intracellular balance of A and G nucleotides.; GO: 0003824 catalytic activity, 0055114 oxidation-reduction process; PDB: 3FFS_D 1VRD_A 1JCN_B 1EEP_B 3TSB_B 3USB_B 3TSD_A 4FF0_A 4FEZ_A 3KHJ_D ....
Probab=57.60 E-value=13 Score=34.96 Aligned_cols=92 Identities=23% Similarity=0.220 Sum_probs=63.1
Q ss_pred HHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeC
Q 026913 8 FCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 8 aI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvG 87 (231)
..+.+.+|-+.|..+.-|..=-|....+...++ .+.+ -++++.||+.|=-+.+....|.+.|+...--|||
T Consensus 109 ~~er~~~L~~agvD~ivID~a~g~s~~~~~~ik-~ik~--------~~~~~~viaGNV~T~e~a~~L~~aGad~vkVGiG 179 (352)
T PF00478_consen 109 DFERAEALVEAGVDVIVIDSAHGHSEHVIDMIK-KIKK--------KFPDVPVIAGNVVTYEGAKDLIDAGADAVKVGIG 179 (352)
T ss_dssp HHHHHHHHHHTT-SEEEEE-SSTTSHHHHHHHH-HHHH--------HSTTSEEEEEEE-SHHHHHHHHHTT-SEEEESSS
T ss_pred HHHHHHHHHHcCCCEEEccccCccHHHHHHHHH-HHHH--------hCCCceEEecccCCHHHHHHHHHcCCCEEEEecc
Confidence 456677787777765444444487666655444 3333 2568999999999999999999999877777877
Q ss_pred ------CcccccCCCCccceEEEEeEE
Q 026913 88 ------TYLVTCYAQAALGCVFKLVEI 108 (231)
Q Consensus 88 ------T~l~~~~~~p~l~~vyKlv~~ 108 (231)
|+.++..+.|-+..||++.+.
T Consensus 180 pGsiCtTr~v~GvG~PQ~tAv~~~a~~ 206 (352)
T PF00478_consen 180 PGSICTTREVTGVGVPQLTAVYECAEA 206 (352)
T ss_dssp SSTTBHHHHHHSBSCTHHHHHHHHHHH
T ss_pred CCcccccccccccCCcHHHHHHHHHHH
Confidence 334456678888888887654
No 115
>cd04722 TIM_phosphate_binding TIM barrel proteins share a structurally conserved phosphate binding motif and in general share an eight beta/alpha closed barrel structure. Specific for this family is the conserved phosphate binding site at the edges of strands 7 and 8. The phosphate comes either from the substrate, as in the case of inosine monophosphate dehydrogenase (IMPDH), or from ribulose-5-phosphate 3-epimerase (RPE) or from cofactors, like FMN.
Probab=57.06 E-value=13 Score=29.71 Aligned_cols=31 Identities=23% Similarity=0.379 Sum_probs=26.3
Q ss_pred CCeEEEEeCCCCH-HHHHHHHhcCCcccEEeeCC
Q 026913 56 EKMSITASNDLNE-ETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 56 ~~v~I~~S~~Lde-~~i~~l~~~g~~id~fGvGT 88 (231)
.++.|+++||++. +.+.++.+.| .|+++||+
T Consensus 169 ~~~pi~~~GGi~~~~~~~~~~~~G--ad~v~vgs 200 (200)
T cd04722 169 SKVPVIAGGGINDPEDAAEALALG--ADGVIVGS 200 (200)
T ss_pred CCCCEEEECCCCCHHHHHHHHHhC--CCEEEecC
Confidence 3568999999988 9999998888 68888885
No 116
>PRK08005 epimerase; Validated
Probab=56.98 E-value=17 Score=31.66 Aligned_cols=32 Identities=22% Similarity=0.223 Sum_probs=28.5
Q ss_pred EEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 59 SITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 59 ~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
.|-+-||++++.|..+.+.| +|.|=+||.+..
T Consensus 165 ~I~VDGGI~~~~i~~l~~aG--ad~~V~GsaiF~ 196 (210)
T PRK08005 165 ECWADGGITLRAARLLAAAG--AQHLVIGRALFT 196 (210)
T ss_pred CEEEECCCCHHHHHHHHHCC--CCEEEEChHhhC
Confidence 59999999999999999999 578888888875
No 117
>cd02930 DCR_FMN 2,4-dienoyl-CoA reductase (DCR) FMN-binding domain. DCR in E. coli is an iron-sulfur flavoenzyme which contains FMN, FAD, and a 4Fe-4S cluster. It is also a monomer, unlike that of its eukaryotic counterparts which form homotetramers and lack the flavin and iron-sulfur cofactors. Metabolism of unsaturated fatty acids requires auxiliary enzymes in addition to those used in b-oxidation. After a given number of cycles through the b-oxidation pathway, those unsaturated fatty acyl-CoAs with double bonds at even-numbered carbon positions contain 2-trans, 4-cis double bonds that can not be modified by enoyl-CoA hydratase. DCR utilizes NADPH to remove the C4-C5 double bond. DCR can catalyze the reduction of both natural fatty acids with cis double bonds, as well as substrates containing trans double bonds. The reaction is initiated by hybrid transfer from NADPH to FAD, which in turn transfers electrons, one at a time, to FMN via the 4Fe-4S cluster. The fully reduced FMN provi
Probab=56.95 E-value=19 Score=33.28 Aligned_cols=76 Identities=18% Similarity=0.229 Sum_probs=49.3
Q ss_pred hHHHHHHHHHHHhcCCCccEE-------e--eC---CC--ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHH
Q 026913 5 VPNFCAVALALNDLGYKAVGI-------R--LD---SG--DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEE 69 (231)
Q Consensus 5 v~naI~va~~l~~~g~~~~gV-------R--lD---SG--Dl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L-de~ 69 (231)
+..++++++.|.+.|..+.-| | .+ ++ ....+++++ .++ .++.|+++|++ +.+
T Consensus 223 ~~e~~~i~~~Le~~G~d~i~vs~g~~e~~~~~~~~~~~~~~~~~~~~~i----k~~---------v~iPVi~~G~i~~~~ 289 (353)
T cd02930 223 WEEVVALAKALEAAGADILNTGIGWHEARVPTIATSVPRGAFAWATAKL----KRA---------VDIPVIASNRINTPE 289 (353)
T ss_pred HHHHHHHHHHHHHcCCCEEEeCCCcCCCCCccccccCCchhhHHHHHHH----HHh---------CCCCEEEcCCCCCHH
Confidence 456888999998888544333 1 11 11 112222222 222 35679999998 788
Q ss_pred HHHHHHhcCCcccEEeeCCcccccC
Q 026913 70 TLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 70 ~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
.++++.+.|. +|..++|..++...
T Consensus 290 ~a~~~i~~g~-~D~V~~gR~~l~dP 313 (353)
T cd02930 290 VAERLLADGD-ADMVSMARPFLADP 313 (353)
T ss_pred HHHHHHHCCC-CChhHhhHHHHHCc
Confidence 8999988765 78999999998843
No 118
>PRK07114 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=56.63 E-value=99 Score=27.22 Aligned_cols=66 Identities=14% Similarity=0.025 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC
Q 026913 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (231)
Q Consensus 6 ~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~ 79 (231)
..|+.++++|.+.|.+..=|-+.|.+-....+++++.+.+ .++++.|=+.-=+|.+.++...+.|+
T Consensus 27 ~~a~~~~~al~~gGi~~iEiT~~tp~a~~~i~~l~~~~~~--------~~p~~~vGaGTVl~~e~a~~a~~aGA 92 (222)
T PRK07114 27 EVAKKVIKACYDGGARVFEFTNRGDFAHEVFAELVKYAAK--------ELPGMILGVGSIVDAATAALYIQLGA 92 (222)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCCCcHHHHHHHHHHHHHh--------hCCCeEEeeEeCcCHHHHHHHHHcCC
Confidence 3455566666666666666666665533333333333322 13344444444455555555555543
No 119
>cd04730 NPD_like 2-Nitropropane dioxygenase (NPD), one of the nitroalkane oxidizing enzyme families, catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDP is a member of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=56.51 E-value=10 Score=32.39 Aligned_cols=40 Identities=18% Similarity=0.320 Sum_probs=32.8
Q ss_pred CeEEEEeCCCCH-HHHHHHHhcCCcccEEeeCCcccccCCCCc
Q 026913 57 KMSITASNDLNE-ETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (231)
Q Consensus 57 ~v~I~~S~~Lde-~~i~~l~~~g~~id~fGvGT~l~~~~~~p~ 98 (231)
++.|+++||++. +.+.++.+.| .|+..||+.++.....|.
T Consensus 156 ~~Pvi~~GGI~~~~~v~~~l~~G--adgV~vgS~l~~~~e~~~ 196 (236)
T cd04730 156 DIPVIAAGGIADGRGIAAALALG--ADGVQMGTRFLATEESGA 196 (236)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CcEEEEchhhhcCcccCC
Confidence 458999999987 8899988877 689999999998665543
No 120
>TIGR01501 MthylAspMutase methylaspartate mutase, S subunit. This model represents the S (sigma) subunit of methylaspartate mutase (glutamate mutase), a cobalamin-dependent enzyme that catalyzes the first step in a pathway of glutamate fermentation.
Probab=56.15 E-value=89 Score=25.35 Aligned_cols=54 Identities=15% Similarity=0.129 Sum_probs=36.0
Q ss_pred CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC--CHHH----HHHHHhcCCcccEEeeCCccc
Q 026913 30 GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL--NEET----LDALNKQGHEVDAFGIGTYLV 91 (231)
Q Consensus 30 GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L--de~~----i~~l~~~g~~id~fGvGT~l~ 91 (231)
|--....+++.+.|++. |+.++.|++.|.+ -++. ..+|.+.|. --.||=||.+-
T Consensus 63 ~~~~~~~~~~~~~l~~~-------gl~~~~vivGG~~vi~~~d~~~~~~~l~~~Gv-~~vF~pgt~~~ 122 (134)
T TIGR01501 63 GHGEIDCKGLRQKCDEA-------GLEGILLYVGGNLVVGKQDFPDVEKRFKEMGF-DRVFAPGTPPE 122 (134)
T ss_pred ccCHHHHHHHHHHHHHC-------CCCCCEEEecCCcCcChhhhHHHHHHHHHcCC-CEEECcCCCHH
Confidence 33344566677777776 8888788888864 2322 446788885 35899998763
No 121
>TIGR01182 eda Entner-Doudoroff aldolase. 2-deydro-3-deoxyphosphogluconate aldolase (EC 4.1.2.14) is an enzyme of the Entner-Doudoroff pathway. This aldolase has another function, 4-hydroxy-2-oxoglutarate aldolase (EC 4.1.3.16) shown experimentally in Escherichia coli and Pseudomonas putida
Probab=55.85 E-value=80 Score=27.41 Aligned_cols=97 Identities=22% Similarity=0.178 Sum_probs=62.2
Q ss_pred hHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEE
Q 026913 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 5 v~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~f 84 (231)
...|+.++++|.+.|.+..=|-++|.+-... .+.+.+ -++++.|=+..=+|.+..+...+.|+. |
T Consensus 19 ~e~a~~~~~al~~~Gi~~iEit~~t~~a~~~----i~~l~~--------~~~~~~vGAGTVl~~~~a~~a~~aGA~---F 83 (204)
T TIGR01182 19 VDDALPLAKALIEGGLRVLEVTLRTPVALDA----IRLLRK--------EVPDALIGAGTVLNPEQLRQAVDAGAQ---F 83 (204)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCccHHHH----HHHHHH--------HCCCCEEEEEeCCCHHHHHHHHHcCCC---E
Confidence 3567889999999999998999999874443 333333 135678888888888888888888763 3
Q ss_pred eeCCcccc-------cCCCCccceEEEEeEE-----CCcccccc
Q 026913 85 GIGTYLVT-------CYAQAALGCVFKLVEI-----NKQPRIKL 116 (231)
Q Consensus 85 GvGT~l~~-------~~~~p~l~~vyKlv~~-----~g~p~~K~ 116 (231)
-|.-++.. ..+.|.+-+++-.+|+ -|-..+|+
T Consensus 84 ivsP~~~~~v~~~~~~~~i~~iPG~~TptEi~~A~~~Ga~~vKl 127 (204)
T TIGR01182 84 IVSPGLTPELAKHAQDHGIPIIPGVATPSEIMLALELGITALKL 127 (204)
T ss_pred EECCCCCHHHHHHHHHcCCcEECCCCCHHHHHHHHHCCCCEEEE
Confidence 34444322 1234445555544444 24455665
No 122
>cd02931 ER_like_FMN Enoate reductase (ER)-like FMN-binding domain. Enoate reductase catalyzes the NADH-dependent reduction of carbon-carbon double bonds of several molecules, including nonactivated 2-enoates, alpha,beta-unsaturated aldehydes, cyclic ketones, and methylketones. ERs are similar to 2,4-dienoyl-CoA reductase from E. coli and to the old yellow enzyme from Saccharomyces cerevisiae.
Probab=55.65 E-value=35 Score=32.10 Aligned_cols=74 Identities=16% Similarity=0.256 Sum_probs=49.6
Q ss_pred hHHHHHHHHHHHhcCCCccEEeeCCCC-----------------hHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-
Q 026913 5 VPNFCAVALALNDLGYKAVGIRLDSGD-----------------LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL- 66 (231)
Q Consensus 5 v~naI~va~~l~~~g~~~~gVRlDSGD-----------------l~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L- 66 (231)
+..++.+++.|.+.|..+.-| -.|. ...+++++++. -++.++++|++
T Consensus 251 ~e~~~~~~~~l~~~gvD~l~v--s~g~~~~~~~~~~~~~~~~~~~~~~~~~ik~~-------------~~~pvi~~G~i~ 315 (382)
T cd02931 251 LEEGLKAAKILEEAGYDALDV--DAGSYDAWYWNHPPMYQKKGMYLPYCKALKEV-------------VDVPVIMAGRME 315 (382)
T ss_pred HHHHHHHHHHHHHhCCCEEEe--CCCCCcccccccCCccCCcchhHHHHHHHHHH-------------CCCCEEEeCCCC
Confidence 356778899998888655433 2221 11223333322 23579999999
Q ss_pred CHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 67 NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 67 de~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
+.+.+.++++.|. .|..|+|..++...
T Consensus 316 ~~~~~~~~l~~g~-~D~V~~gR~~ladP 342 (382)
T cd02931 316 DPELASEAINEGI-ADMISLGRPLLADP 342 (382)
T ss_pred CHHHHHHHHHcCC-CCeeeechHhHhCc
Confidence 7888999988765 79999999998843
No 123
>cd00452 KDPG_aldolase KDPG and KHG aldolase. This family belongs to the class I adolases whose reaction mechanism involves Schiff base formation between a substrate carbonyl and lysine residue in the active site. 2-keto-3-deoxy-6-phosphogluconate (KDPG) aldolase, is best known for its role in the Entner-Doudoroff pathway of bacteria, where it catalyzes the reversible cleavage of KDPG to pyruvate and glyceraldehyde-3-phosphate. 2-keto-4-hydroxyglutarate (KHG) aldolase, which has enzymatic specificity toward glyoxylate, forming KHG in the presence of pyruvate, and is capable of regulating glyoxylate levels in the glyoxylate bypass, an alternate pathway when bacteria are grown on acetate carbon sources.
Probab=54.10 E-value=81 Score=26.37 Aligned_cols=63 Identities=29% Similarity=0.286 Sum_probs=46.0
Q ss_pred HHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026913 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (231)
Q Consensus 6 ~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~ 80 (231)
.+++.++++|.+.|.++.=||..+++-.. ..+.+.+ .++++.|-+..=++.+.+....+.|+.
T Consensus 16 ~~~~~~~~~l~~~G~~~vev~~~~~~~~~----~i~~l~~--------~~~~~~iGag~v~~~~~~~~a~~~Ga~ 78 (190)
T cd00452 16 EDALALAEALIEGGIRAIEITLRTPGALE----AIRALRK--------EFPEALIGAGTVLTPEQADAAIAAGAQ 78 (190)
T ss_pred HHHHHHHHHHHHCCCCEEEEeCCChhHHH----HHHHHHH--------HCCCCEEEEEeCCCHHHHHHHHHcCCC
Confidence 56778888888999999899988887333 3333333 234678888888888888888887753
No 124
>PF06135 DUF965: Bacterial protein of unknown function (DUF965); InterPro: IPR009309 This family consists of several hypothetical bacterial proteins. The function of the family is unknown.
Probab=53.15 E-value=15 Score=27.42 Aligned_cols=41 Identities=41% Similarity=0.659 Sum_probs=30.0
Q ss_pred hHHHH-HHHHHHHhcCCCc----cEEeeCCCChHHHHHH--HHHHHHHH
Q 026913 5 VPNFC-AVALALNDLGYKA----VGIRLDSGDLAYLSCE--ARKFFRTI 46 (231)
Q Consensus 5 v~naI-~va~~l~~~g~~~----~gVRlDSGDl~~ls~~--~r~~ld~~ 46 (231)
+...+ .|..+|+++|+.+ .|- +=||||+|.... ||.+....
T Consensus 17 ~~~iL~~Vy~AL~EKGYnPinQivGY-llSGDPaYItsh~nAR~lIr~~ 64 (79)
T PF06135_consen 17 IREILKQVYAALEEKGYNPINQIVGY-LLSGDPAYITSHNNARNLIRKI 64 (79)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHhh-eecCCCccccCcccHHHHHHHH
Confidence 34445 6788999999875 343 459999999866 78777765
No 125
>PRK13523 NADPH dehydrogenase NamA; Provisional
Probab=51.82 E-value=31 Score=32.03 Aligned_cols=36 Identities=14% Similarity=0.176 Sum_probs=26.4
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
++.|+++|++ +.+.+++++++|. .|..++|..++.+
T Consensus 275 ~ipVi~~G~i~~~~~a~~~l~~g~-~D~V~~gR~~iad 311 (337)
T PRK13523 275 NIATGAVGLITSGAQAEEILQNNR-ADLIFIGRELLRN 311 (337)
T ss_pred CCcEEEeCCCCCHHHHHHHHHcCC-CChHHhhHHHHhC
Confidence 3567788887 6777888877764 5777888877774
No 126
>cd04738 DHOD_2_like Dihydroorotate dehydrogenase (DHOD) class 2. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences, their cellular location and their natural electron acceptor used to reoxidize the flavin group. Members of class 1 are cytosolic enzymes and multimers, while class 2 enzymes are membrane associated, monomeric and use respiratory quinones as their physiological electron acceptors.
Probab=51.33 E-value=50 Score=30.28 Aligned_cols=34 Identities=21% Similarity=0.174 Sum_probs=29.1
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
++.|+++||+ +.+.+.++...| .|...|||.++.
T Consensus 280 ~ipIi~~GGI~t~~da~e~l~aG--Ad~V~vg~~~~~ 314 (327)
T cd04738 280 KIPIIGVGGISSGEDAYEKIRAG--ASLVQLYTGLVY 314 (327)
T ss_pred CCcEEEECCCCCHHHHHHHHHcC--CCHHhccHHHHh
Confidence 5789999999 888999998888 678889998864
No 127
>PRK06582 coproporphyrinogen III oxidase; Provisional
Probab=51.04 E-value=31 Score=32.60 Aligned_cols=69 Identities=10% Similarity=0.182 Sum_probs=49.2
Q ss_pred CccEEeeCCCChHHHHHH-HHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCcccEEeeCCc
Q 026913 21 KAVGIRLDSGDLAYLSCE-ARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 21 ~~~gVRlDSGDl~~ls~~-~r~~ld~~~~~l~~~g~~~v~I~~S-~~Lde~~i~~l~~~g~~id~fGvGT~ 89 (231)
++.-|-+=-|.|..|+.. ..++++.+...++++....+.|-+. +.++++.++.|.+.|....++||=|.
T Consensus 62 ~i~tiy~GGGTPs~l~~~~l~~ll~~i~~~~~~~~~~eitiE~nP~~~~~e~l~~l~~~GvnRiSiGvQS~ 132 (390)
T PRK06582 62 YIKSIFFGGGTPSLMNPVIVEGIINKISNLAIIDNQTEITLETNPTSFETEKFKAFKLAGINRVSIGVQSL 132 (390)
T ss_pred ceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEEECCcC
Confidence 344555555888777655 5556777766666665556666665 57999999999999987778887554
No 128
>cd04727 pdxS PdxS is a subunit of the pyridoxal 5'-phosphate (PLP) synthase, an important enzyme in deoxyxylulose 5-phosphate (DXP)-independent pathway for de novo biosynthesis of PLP, present in some eubacteria, in archaea, fungi, plants, plasmodia, and some metazoa. Together with PdxT, PdxS forms the PLP synthase, a heteromeric glutamine amidotransferase (GATase), whereby PdxT produces ammonia from glutamine and PdxS combines ammonia with five- and three-carbon phosphosugars to form PLP. PLP is the biologically active form of vitamin B6, an essential cofactor in many biochemical processes. PdxS subunits form two hexameric rings.
Probab=50.76 E-value=49 Score=30.40 Aligned_cols=35 Identities=11% Similarity=0.233 Sum_probs=29.6
Q ss_pred eEEE--EeCCC-CHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 58 MSIT--ASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 58 v~I~--~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
+.|+ +.||+ +++.+..+.+.| ++++-||+.+..+.
T Consensus 195 iPVV~iAeGGI~Tpena~~v~e~G--AdgVaVGSAI~~a~ 232 (283)
T cd04727 195 LPVVNFAAGGVATPADAALMMQLG--ADGVFVGSGIFKSE 232 (283)
T ss_pred CCeEEEEeCCCCCHHHHHHHHHcC--CCEEEEcHHhhcCC
Confidence 4565 99999 999999999988 68888999998754
No 129
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=50.60 E-value=65 Score=29.68 Aligned_cols=89 Identities=27% Similarity=0.308 Sum_probs=53.6
Q ss_pred HHHHHHHHHHhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEE
Q 026913 7 NFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 7 naI~va~~l~~~g~~~~gVRlDS--GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~f 84 (231)
++.+.+.+|-+.|.+ .|=+|+ |+... ..++.+.+.+. ++++.|++.+-.+.+....+.+.|+....-
T Consensus 94 ~~~~~~~~l~eagv~--~I~vd~~~G~~~~-~~~~i~~ik~~--------~p~v~Vi~G~v~t~~~A~~l~~aGaD~I~v 162 (325)
T cd00381 94 DDKERAEALVEAGVD--VIVIDSAHGHSVY-VIEMIKFIKKK--------YPNVDVIAGNVVTAEAARDLIDAGADGVKV 162 (325)
T ss_pred hHHHHHHHHHhcCCC--EEEEECCCCCcHH-HHHHHHHHHHH--------CCCceEEECCCCCHHHHHHHHhcCCCEEEE
Confidence 455556666666654 444665 55432 23334444443 246899999999999999999999765544
Q ss_pred eeC------CcccccCCCCccceEEEEe
Q 026913 85 GIG------TYLVTCYAQAALGCVFKLV 106 (231)
Q Consensus 85 GvG------T~l~~~~~~p~l~~vyKlv 106 (231)
|+| |........|.+..++.+.
T Consensus 163 g~g~G~~~~t~~~~g~g~p~~~~i~~v~ 190 (325)
T cd00381 163 GIGPGSICTTRIVTGVGVPQATAVADVA 190 (325)
T ss_pred CCCCCcCcccceeCCCCCCHHHHHHHHH
Confidence 544 2333334556665555544
No 130
>PF01884 PcrB: PcrB family; InterPro: IPR008205 This entry represents geranylgeranylglyceryl phosphate (GGGP) synthase, which is a prenyltransferase that catalyses the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C3 hydroxyl of sn-glycerol-1-phosphate (G1P). This reaction is the first ether-bond-formation step in the biosynthesis of archaeal membrane lipids. This entry also matches putative glycerol-1-phosphate prenyltransferases that may catalyse the transfer of a prenyl moiety to sn-glycerol-1-phosphate (G1P) []. Some of the prokaryotic proteins in this family are related to pcrB. The Staphylococcus aureus chromosomal gene pcrA encodes a protein with significant similarity (40% identity) to two Escherichia coli helicases: the helicase II encoded by the uvrD gene and the Rep helicase. PcrB gene seems to belong to an operon containing at least one other gene, pcrBA, downstream from pcrB []. The PcrB proteins often contain an FMN binding site although the function of these proteins is still unknown.; GO: 0016765 transferase activity, transferring alkyl or aryl (other than methyl) groups; PDB: 1VIZ_A 2F6X_B 2F6U_B 3VKD_A 3VKA_A 3VK5_B 3VKC_B 3VKB_B.
Probab=50.49 E-value=92 Score=27.70 Aligned_cols=64 Identities=14% Similarity=0.269 Sum_probs=38.6
Q ss_pred cCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCcccc
Q 026913 18 LGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 18 ~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
+|.++..+===||-....+..+++.-+. +.++.+|++||++ .+.++++.+.|| |..-|||-+-.
T Consensus 152 ~g~~~iYLEaGSGa~~~v~~~v~~~~~~---------~~~~~LivGGGIrs~e~A~~~~~aGA--D~IVvGn~iee 216 (230)
T PF01884_consen 152 LGMPIIYLEAGSGAYGPVPEEVIAAVKK---------LSDIPLIVGGGIRSPEQAREMAEAGA--DTIVVGNAIEE 216 (230)
T ss_dssp TT-SEEEEE--TTSSS-HHHHHHHHHHH---------SSSSEEEEESS--SHHHHHHHHCTTS--SEEEESCHHHH
T ss_pred hCCCEEEEEeCCCCCCCccHHHHHHHHh---------cCCccEEEeCCcCCHHHHHHHHHCCC--CEEEECCEEEE
Confidence 5666544444455444444455544433 3678999999994 788888888895 67778886644
No 131
>cd02810 DHOD_DHPD_FMN Dihydroorotate dehydrogenase (DHOD) and Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHOD catalyzes the oxidation of (S)-dihydroorotate to orotate. This is the fourth step and the only redox reaction in the de novo biosynthesis of UMP, the precursor of all pyrimidine nucleotides. DHOD requires FMN as co-factor. DHOD divides into class 1 and class 2 based on their amino acid sequences and cellular location. Members of class 1 are cytosolic enzymes and multimers while class 2 enzymes are membrane associated and monomeric. The class 1 enzymes can be further divided into subtypes 1A and 1B which are homodimers and heterotetrameric proteins, respectively. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass its homodimeric interface twice. Two of
Probab=50.30 E-value=64 Score=28.57 Aligned_cols=35 Identities=17% Similarity=0.212 Sum_probs=30.3
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCccccc
Q 026913 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
++.|+++||++ .+.+.++...| .|+.+|||.+...
T Consensus 243 ~ipiia~GGI~~~~da~~~l~~G--Ad~V~vg~a~~~~ 278 (289)
T cd02810 243 DIPIIGVGGIDSGEDVLEMLMAG--ASAVQVATALMWD 278 (289)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--ccHheEcHHHHhc
Confidence 67999999996 78888888888 7899999998873
No 132
>cd02808 GltS_FMN Glutamate synthase (GltS) FMN-binding domain. GltS is a complex iron-sulfur flavoprotein that catalyzes the reductive synthesis of L-glutamate from 2-oxoglutarate and L-glutamine via intramolecular channelling of ammonia, a reaction in the plant, yeast and bacterial pathway for ammonia assimilation. It is a multifunctional enzyme that functions through three distinct active centers, carrying out L-glutamine hydrolysis, conversion of 2-oxoglutarate into L-glutamate, and electron uptake from an electron donor.
Probab=50.25 E-value=96 Score=29.35 Aligned_cols=47 Identities=26% Similarity=0.349 Sum_probs=36.5
Q ss_pred HHHHHHHHHHhHhhCCCCC-CCeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 37 CEARKFFRTIEKEFGVPDF-EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 37 ~~~r~~ld~~~~~l~~~g~-~~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
.++++.+.+. ++ .++.|++|||+ +...+.+....| .|+.++||.+..
T Consensus 271 ~~v~~~~~~~-------~~~~~i~viasGGI~~g~Dv~kalaLG--Ad~V~ig~~~l~ 319 (392)
T cd02808 271 ARAHQALVKN-------GLRDRVSLIASGGLRTGADVAKALALG--ADAVGIGTAALI 319 (392)
T ss_pred HHHHHHHHHc-------CCCCCCeEEEECCCCCHHHHHHHHHcC--CCeeeechHHHH
Confidence 3455555553 33 36899999999 888899988889 689999999987
No 133
>PLN02429 triosephosphate isomerase
Probab=48.28 E-value=44 Score=31.09 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=30.8
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
++++|+..|+++.+-+.+|..+ ..+|+|.||+.-..
T Consensus 262 ~~irILYGGSV~~~N~~el~~~-~diDG~LVGgASL~ 297 (315)
T PLN02429 262 SKTRIIYGGSVNGGNSAELAKE-EDIDGFLVGGASLK 297 (315)
T ss_pred cCceEEEcCccCHHHHHHHhcC-CCCCEEEeecceec
Confidence 5689999999999999999865 33899999987764
No 134
>cd01469 vWA_integrins_alpha_subunit Integrins are a class of adhesion receptors that link the extracellular matrix to the cytoskeleton and cooperate with growth factor receptors to promote celll survival, cell cycle progression and cell migration. Integrins consist of an alpha and a beta sub-unit. Each sub-unit has a large extracellular portion, a single transmembrane segment and a short cytoplasmic domain. The N-terminal domains of the alpha and beta subunits associate to form the integrin headpiece, which contains the ligand binding site, whereas the C-terminal segments traverse the plasma membrane and mediate interaction with the cytoskeleton and with signalling proteins.The VWA domains present in the alpha subunits of integrins seem to be a chordate specific radiation of the gene family being found only in vertebrates. They mediate protein-protein interactions.
Probab=48.27 E-value=35 Score=28.00 Aligned_cols=38 Identities=16% Similarity=0.298 Sum_probs=29.3
Q ss_pred CCCCCeEEEEeCCCC------HHHHHHHHhcCCcccEEeeCCcc
Q 026913 53 PDFEKMSITASNDLN------EETLDALNKQGHEVDAFGIGTYL 90 (231)
Q Consensus 53 ~g~~~v~I~~S~~Ld------e~~i~~l~~~g~~id~fGvGT~l 90 (231)
++.+++-|+.++|.+ +..+..+.+.|..+-+.|||+..
T Consensus 101 ~~~~kv~illTDG~~~~~~~~~~~~~~~k~~gv~v~~Vgvg~~~ 144 (177)
T cd01469 101 KDATKVLVVITDGESHDDPLLKDVIPQAEREGIIRYAIGVGGHF 144 (177)
T ss_pred CCCCeEEEEEeCCCCCCccccHHHHHHHHHCCcEEEEEEecccc
Confidence 356778999999886 44567777789888888998763
No 135
>PRK14567 triosephosphate isomerase; Provisional
Probab=47.36 E-value=71 Score=28.76 Aligned_cols=36 Identities=19% Similarity=0.197 Sum_probs=31.1
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
++++|+..|+.+++-+.+|.+++ .+|++-||+.-..
T Consensus 201 ~~v~IlYGGSV~~~N~~~l~~~~-diDG~LVGgasL~ 236 (253)
T PRK14567 201 KNIKIVYGGSLKAENAKDILSLP-DVDGGLIGGASLK 236 (253)
T ss_pred ccceEEEcCcCCHHHHHHHHcCC-CCCEEEeehhhhc
Confidence 57999999999999999998764 3899999987654
No 136
>PRK09431 asnB asparagine synthetase B; Provisional
Probab=46.94 E-value=51 Score=32.74 Aligned_cols=57 Identities=18% Similarity=0.210 Sum_probs=42.1
Q ss_pred ChHHHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcC---------------CcccEEeeCCc
Q 026913 31 DLAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQG---------------HEVDAFGIGTY 89 (231)
Q Consensus 31 Dl~~ls~~~r~~ld~~-~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g---------------~~id~fGvGT~ 89 (231)
+......++|+.|.++ ..++..+ ..+-++.|||||=-.|..+..+- .++.+|-||..
T Consensus 204 ~~~~~~~~lr~~L~~aV~~rl~sd--vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~~~l~tfsig~~ 276 (554)
T PRK09431 204 DNVTDKNELRDALEAAVKKRLMSD--VPYGVLLSGGLDSSLISAIAKKYAARRIEDDERSEAWWPQLHSFAVGLE 276 (554)
T ss_pred CHHHHHHHHHHHHHHHHHHHhcCC--CceEEEcCCCccHHHHHHHHHHhhcccccccccccccCCCceEEEEeCC
Confidence 3445567799999988 6666543 46789999999999999886531 14778888864
No 137
>COG0134 TrpC Indole-3-glycerol phosphate synthase [Amino acid transport and metabolism]
Probab=46.81 E-value=49 Score=29.88 Aligned_cols=73 Identities=29% Similarity=0.456 Sum_probs=45.6
Q ss_pred HHHHHHHhcCCCccEEeeCCCChHHHHHH---HHHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCCcccEEe
Q 026913 10 AVALALNDLGYKAVGIRLDSGDLAYLSCE---ARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDAFG 85 (231)
Q Consensus 10 ~va~~l~~~g~~~~gVRlDSGDl~~ls~~---~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld-e~~i~~l~~~g~~id~fG 85 (231)
++.++++ .|.++.|| +.=||..+..- +.++.... + .++.+|.-+|+. .+.+..+...| +|+|=
T Consensus 168 El~rAl~-~ga~iIGI--NnRdL~tf~vdl~~t~~la~~~-------p-~~~~~IsESGI~~~~dv~~l~~~g--a~a~L 234 (254)
T COG0134 168 ELERALK-LGAKIIGI--NNRDLTTLEVDLETTEKLAPLI-------P-KDVILISESGISTPEDVRRLAKAG--ADAFL 234 (254)
T ss_pred HHHHHHh-CCCCEEEE--eCCCcchheecHHHHHHHHhhC-------C-CCcEEEecCCCCCHHHHHHHHHcC--CCEEE
Confidence 3444444 57776665 56666554433 33333332 2 234444445555 99999999888 78999
Q ss_pred eCCcccccCC
Q 026913 86 IGTYLVTCYA 95 (231)
Q Consensus 86 vGT~l~~~~~ 95 (231)
|||+|+.+.+
T Consensus 235 VG~slM~~~~ 244 (254)
T COG0134 235 VGEALMRADD 244 (254)
T ss_pred ecHHHhcCCC
Confidence 9999988654
No 138
>PRK07379 coproporphyrinogen III oxidase; Provisional
Probab=46.72 E-value=1.1e+02 Score=28.94 Aligned_cols=80 Identities=15% Similarity=0.323 Sum_probs=54.0
Q ss_pred HHHHHHHh---cCCCccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCcccEE
Q 026913 10 AVALALND---LGYKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 10 ~va~~l~~---~g~~~~gVRlDSGDl~~ls-~~~r~~ld~~~~~l~~~g~~~v~I~~S-~~Lde~~i~~l~~~g~~id~f 84 (231)
++.+|++. .+..+.-|-+-.|.+..++ .+++++++.....+++.+-..+.+-+. +.++.+.++.|.+.|..-.++
T Consensus 52 ~L~~Ei~~~~~~~~~i~~iy~GGGTps~l~~~~l~~ll~~i~~~~~~~~~~eit~E~~P~~lt~e~l~~l~~~Gvnrisl 131 (400)
T PRK07379 52 VLCQEIAITPSFGQPLQTVFFGGGTPSLLSVEQLERILTTLDQRFGIAPDAEISLEIDPGTFDLEQLQGYRSLGVNRVSL 131 (400)
T ss_pred HHHHHHHHhhccCCceeEEEECCCccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCcCCHHHHHHHHHCCCCEEEE
Confidence 34455543 2334566777778888775 457788887766676654334454443 689999999999999877788
Q ss_pred eeCCc
Q 026913 85 GIGTY 89 (231)
Q Consensus 85 GvGT~ 89 (231)
||=|.
T Consensus 132 GvQS~ 136 (400)
T PRK07379 132 GVQAF 136 (400)
T ss_pred EcccC
Confidence 87553
No 139
>TIGR00177 molyb_syn molybdenum cofactor synthesis domain. The Drosophila protein cinnamon, the Arabidopsis protein cnx1, and rat protein gephyrin each have one domain like MoeA and one like MoaB and Mog. These domains are, however, distantly related to each other, as captured by this model. Gephyrin is unusual in that it seems to be a tubulin-binding neuroprotein involved in the clustering of both blycine receptors and GABA receptors, rather than a protein of molybdenum cofactor biosynthesis.
Probab=46.28 E-value=1.5e+02 Score=23.64 Aligned_cols=33 Identities=18% Similarity=0.212 Sum_probs=15.0
Q ss_pred HHHHHHHhcCCCccEEeeCCCChHHHHHHHHHH
Q 026913 10 AVALALNDLGYKAVGIRLDSGDLAYLSCEARKF 42 (231)
Q Consensus 10 ~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ 42 (231)
.++..|++.|.++....+=.=|...+...++++
T Consensus 31 ~l~~~l~~~G~~v~~~~~v~Dd~~~i~~~l~~~ 63 (144)
T TIGR00177 31 LLAALLEEAGFNVSRLGIVPDDPEEIREILRKA 63 (144)
T ss_pred HHHHHHHHCCCeEEEEeecCCCHHHHHHHHHHH
Confidence 334445555655544444344444444433333
No 140
>TIGR00736 nifR3_rel_arch TIM-barrel protein, putative. Members of this family show a distant relationship by PSI-BLAST to alpha/beta (TIM) barrel enzymes such as dihydroorotate dehydrogenase and glycolate oxidase. At least two closely related but well-separable families among the bacteria, the nifR3/yhdG family and the yjbN family, share a more distant relationship to this family of shorter, exclusively archaeal proteins.
Probab=46.09 E-value=65 Score=28.52 Aligned_cols=74 Identities=22% Similarity=0.284 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCCccEEeeCCCChHH--HHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCCcccE
Q 026913 7 NFCAVALALNDLGYKAVGIRLDSGDLAY--LSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDA 83 (231)
Q Consensus 7 naI~va~~l~~~g~~~~gVRlDSGDl~~--ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld-e~~i~~l~~~g~~id~ 83 (231)
+.+.+++.+.+.|.. +|-+|.+..-. ...++.+.+.++ ++++.||.+||+. .+.+.++.+.| .|+
T Consensus 149 ~~~~~a~~l~~aGad--~i~Vd~~~~g~~~a~~~~I~~i~~~--------~~~ipIIgNGgI~s~eda~e~l~~G--Ad~ 216 (231)
T TIGR00736 149 DELIDALNLVDDGFD--GIHVDAMYPGKPYADMDLLKILSEE--------FNDKIIIGNNSIDDIESAKEMLKAG--ADF 216 (231)
T ss_pred hHHHHHHHHHHcCCC--EEEEeeCCCCCchhhHHHHHHHHHh--------cCCCcEEEECCcCCHHHHHHHHHhC--CCe
Confidence 566788888888765 45556544211 222333333332 2336699999875 47777777777 567
Q ss_pred EeeCCcccc
Q 026913 84 FGIGTYLVT 92 (231)
Q Consensus 84 fGvGT~l~~ 92 (231)
--||+.+..
T Consensus 217 VmvgR~~l~ 225 (231)
T TIGR00736 217 VSVARAILK 225 (231)
T ss_pred EEEcHhhcc
Confidence 777776543
No 141
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=46.08 E-value=65 Score=27.68 Aligned_cols=35 Identities=23% Similarity=0.371 Sum_probs=28.9
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCccccc
Q 026913 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
++.|+++||+. .+.+.++.+.| ++++-|||.+...
T Consensus 193 ~iPvia~GGI~~~~di~~~~~~G--a~gv~vgsa~~~~ 228 (241)
T PRK13585 193 DIPVIASGGVTTLDDLRALKEAG--AAGVVVGSALYKG 228 (241)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcC--CCEEEEEHHHhcC
Confidence 46799999998 88888888777 5788899988774
No 142
>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors. This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=46.03 E-value=1.1e+02 Score=25.50 Aligned_cols=63 Identities=16% Similarity=0.169 Sum_probs=39.1
Q ss_pred HHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEe
Q 026913 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 13 ~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fG 85 (231)
.++++.|+.+. + .++.+.......+.+++.. +--+.-|+.+...+...+..+.+.|.|+..|+
T Consensus 28 ~~~~~~g~~~~-~-~~~~~~~~~~~~~~~~~~~--------~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~~ 90 (270)
T cd06294 28 AVANENGYDIS-L-ATGKNEEELLEEVKKMIQQ--------KRVDGFILLYSREDDPIIDYLKEEKFPFVVIG 90 (270)
T ss_pred HHHHHCCCEEE-E-ecCCCcHHHHHHHHHHHHH--------cCcCEEEEecCcCCcHHHHHHHhcCCCEEEEC
Confidence 44566787763 2 3555555555566666654 32354566665666677888888888877765
No 143
>cd02911 arch_FMN Archeal FMN-binding domain. This family of archaeal proteins are part of the NAD(P)H-dependent flavin oxidoreductase (oxidored) FMN-binding family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN. The specific function of this group is unknown.
Probab=45.63 E-value=72 Score=27.96 Aligned_cols=31 Identities=16% Similarity=0.268 Sum_probs=23.1
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCc
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~ 89 (231)
++.|+++||+ +.+.+.++...| .|+.-||+.
T Consensus 191 ~ipVIgnGgI~s~eda~~~l~~G--aD~VmiGR~ 222 (233)
T cd02911 191 ELFIIGNNSVTTIESAKEMFSYG--ADMVSVARA 222 (233)
T ss_pred CCEEEEECCcCCHHHHHHHHHcC--CCEEEEcCC
Confidence 4678888888 777788877777 566667766
No 144
>cd01456 vWA_ywmD_type VWA ywmD type:Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=45.57 E-value=71 Score=26.71 Aligned_cols=37 Identities=16% Similarity=0.241 Sum_probs=26.0
Q ss_pred CCCCCeEEEEeCCCCH------HHHHHHHhc-----CCcccEEeeCCc
Q 026913 53 PDFEKMSITASNDLNE------ETLDALNKQ-----GHEVDAFGIGTY 89 (231)
Q Consensus 53 ~g~~~v~I~~S~~Lde------~~i~~l~~~-----g~~id~fGvGT~ 89 (231)
++-...-|++|+|.+. +.+.++.+. +..+..+|+|+.
T Consensus 132 ~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~~~i~i~~igiG~~ 179 (206)
T cd01456 132 PGRVNVVVLITDGEDTCGPDPCEVARELAKRRTPAPPIKVNVIDFGGD 179 (206)
T ss_pred CCCcceEEEEcCCCccCCCCHHHHHHHHHHhcCCCCCceEEEEEecCc
Confidence 3444678999999864 345555543 678899999975
No 145
>cd02940 DHPD_FMN Dihydropyrimidine dehydrogenase (DHPD) FMN-binding domain. DHPD catalyzes the first step in pyrimidine degradation: the NADPH-dependent reduction of uracil and thymine to the corresponding 5,6-dihydropyrimidines. DHPD contains two FAD, two FMN, and eight [4Fe-4S] clusters, arranged in two electron transfer chains that pass the dimer interface twice. Two of the Fe-S clusters show a hitherto unobserved coordination involving a glutamine residue.
Probab=45.39 E-value=1.2e+02 Score=27.42 Aligned_cols=34 Identities=12% Similarity=0.143 Sum_probs=24.3
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCcccc
Q 026913 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 57 ~v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
++.|+++||+. .+.+.++...|+ ++..|||.+..
T Consensus 252 ~ipIig~GGI~~~~da~~~l~aGA--~~V~i~ta~~~ 286 (299)
T cd02940 252 GLPISGIGGIESWEDAAEFLLLGA--SVVQVCTAVMN 286 (299)
T ss_pred CCcEEEECCCCCHHHHHHHHHcCC--ChheEceeecc
Confidence 57899998874 556666666784 66777877655
No 146
>PRK00042 tpiA triosephosphate isomerase; Provisional
Probab=45.08 E-value=61 Score=28.97 Aligned_cols=37 Identities=19% Similarity=0.227 Sum_probs=30.8
Q ss_pred CCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 55 FEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 55 ~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
.++++|+..|+++..-+.+|..+ ..+|++.||+.-..
T Consensus 201 ~~~~~IlYGGSV~~~N~~~l~~~-~~vDG~LVG~Asl~ 237 (250)
T PRK00042 201 AEKVRILYGGSVKPDNAAELMAQ-PDIDGALVGGASLK 237 (250)
T ss_pred cCCceEEEcCCCCHHHHHHHhcC-CCCCEEEEeeeeec
Confidence 35789999999999999999765 23899999987654
No 147
>TIGR00262 trpA tryptophan synthase, alpha subunit. Tryptophan synthase catalyzes the last step in the biosynthesis of tryptophan. The alpha chain is responsible for the aldol cleavage of indoleglycerol phosphate to indole and glyceraldehyde 3-phosphate. In bacteria and plants each domain is found on a separate subunit (alpha and beta chains), while in fungi the two domains are fused together on a single multifunctional protein. The signature pattern for trpA contains three conserved acidic residues. [LIVM]-E-[LIVM]-G-x(2)-[FYC]-[ST]-[DE]-[PA]-[LIVMY]-[AGLI]-[DE]-G and this is located between residues 43-58 of the model. The Sulfolobus solfataricus trpA is known to be quite divergent from other known trpA sequences.
Probab=44.86 E-value=25 Score=31.34 Aligned_cols=34 Identities=15% Similarity=0.256 Sum_probs=29.6
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCcccc
Q 026913 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 57 ~v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
+..|++.+|++ .+.+..+.+.| .|++-|||.++.
T Consensus 198 ~~pi~vgfGI~~~e~~~~~~~~G--ADgvVvGSaiv~ 232 (256)
T TIGR00262 198 AKPVLVGFGISKPEQVKQAIDAG--ADGVIVGSAIVK 232 (256)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcC--CCEEEECHHHHH
Confidence 34699999997 99999999988 579999999976
No 148
>PRK08898 coproporphyrinogen III oxidase; Provisional
Probab=44.59 E-value=1.3e+02 Score=28.29 Aligned_cols=70 Identities=11% Similarity=0.251 Sum_probs=52.9
Q ss_pred CCccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCcccEEeeCCc
Q 026913 20 YKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 20 ~~~~gVRlDSGDl~~ls-~~~r~~ld~~~~~l~~~g~~~v~I~~S-~~Lde~~i~~l~~~g~~id~fGvGT~ 89 (231)
.++.-|-+=-|++..|+ .+..++++.....|....-..+.+-+. ++++.+.+..|.+.|....++||=|.
T Consensus 72 ~~i~siy~GGGTPs~L~~~~L~~ll~~i~~~~~~~~~~eit~E~~p~~~~~e~L~~l~~~GvnrisiGvQS~ 143 (394)
T PRK08898 72 RQVHTVFIGGGTPSLLSAAGLDRLLSDVRALLPLDPDAEITLEANPGTFEAEKFAQFRASGVNRLSIGIQSF 143 (394)
T ss_pred CceeEEEECCCCcCCCCHHHHHHHHHHHHHhCCCCCCCeEEEEECCCCCCHHHHHHHHHcCCCeEEEecccC
Confidence 34556666669998885 457777887777776655456777776 78999999999999987778888654
No 149
>cd01473 vWA_CTRP CTRP for CS protein-TRAP-related protein: Adhesion of Plasmodium to host cells is an important phenomenon in parasite invasion and in malaria associated pathology.CTRP encodes a protein containing a putative signal sequence followed by a long extracellular region of 1990 amino acids, a transmembrane domain, and a short cytoplasmic segment. The extracellular region of CTRP contains two separated adhesive domains. The first domain contains six 210-amino acid-long homologous VWA domain repeats. The second domain contains seven repeats of 87-60 amino acids in length, which share similarities with the thrombospondin type 1 domain found in a variety of adhesive molecules. Finally, CTRP also contains consensus motifs found in the superfamily of haematopoietin receptors. The VWA domains in these proteins likely mediate protein-protein interactions.
Probab=44.37 E-value=78 Score=26.60 Aligned_cols=34 Identities=9% Similarity=0.181 Sum_probs=26.8
Q ss_pred CCCeEEEEeCCCCH--------HHHHHHHhcCCcccEEeeCC
Q 026913 55 FEKMSITASNDLNE--------ETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 55 ~~~v~I~~S~~Lde--------~~i~~l~~~g~~id~fGvGT 88 (231)
.+++-|++++|-+- +..+.|+++|..+-+.|||+
T Consensus 108 ~~kv~IllTDG~s~~~~~~~~~~~a~~lk~~gV~i~~vGiG~ 149 (192)
T cd01473 108 APKVTMLFTDGNDTSASKKELQDISLLYKEENVKLLVVGVGA 149 (192)
T ss_pred CCeEEEEEecCCCCCcchhhHHHHHHHHHHCCCEEEEEEecc
Confidence 47899999999763 33456778899999999995
No 150
>PRK05473 hypothetical protein; Provisional
Probab=44.23 E-value=19 Score=27.29 Aligned_cols=41 Identities=41% Similarity=0.608 Sum_probs=30.2
Q ss_pred hHHHH-HHHHHHHhcCCCc----cEEeeCCCChHHHHHH--HHHHHHHH
Q 026913 5 VPNFC-AVALALNDLGYKA----VGIRLDSGDLAYLSCE--ARKFFRTI 46 (231)
Q Consensus 5 v~naI-~va~~l~~~g~~~----~gVRlDSGDl~~ls~~--~r~~ld~~ 46 (231)
+...+ .|-.||+++|+.+ .|- +=||||+|.... ||.+..+.
T Consensus 20 v~eiL~~Vy~AL~EKGYNPinQiVGY-llSGDPaYItsh~nAR~lIrki 67 (86)
T PRK05473 20 VREILTTVYDALEEKGYNPINQIVGY-LLSGDPAYIPRHNDARNLIRKL 67 (86)
T ss_pred HHHHHHHHHHHHHHcCCChHHHHHhh-hccCCCCccCCcccHHHHHHHH
Confidence 44455 6788999999875 243 459999999876 88887775
No 151
>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=44.00 E-value=97 Score=25.11 Aligned_cols=35 Identities=6% Similarity=0.132 Sum_probs=23.5
Q ss_pred CCCeEEEEeCCCCHHH-------HHHHHhcCCcccEEeeCCc
Q 026913 55 FEKMSITASNDLNEET-------LDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 55 ~~~v~I~~S~~Lde~~-------i~~l~~~g~~id~fGvGT~ 89 (231)
...+-|+.|+|.+... ++++.+.+..+-+||||+.
T Consensus 107 ~~~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~ 148 (176)
T cd01464 107 WRPWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPK 148 (176)
T ss_pred cCcEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEeccc
Confidence 4557899999987332 2233334578899999984
No 152
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=43.70 E-value=69 Score=30.29 Aligned_cols=43 Identities=16% Similarity=0.227 Sum_probs=34.7
Q ss_pred CCeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccccCCCCccc
Q 026913 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALG 100 (231)
Q Consensus 56 ~~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~ 100 (231)
.++.||++||+ +-..|.+-...| .|+-.+||.|+.+...|.-.
T Consensus 255 ~~vpVIAdGGI~~~~diakAlalG--Ad~Vm~Gs~fa~t~Espg~~ 298 (368)
T PRK08649 255 RYVHVIADGGIGTSGDIAKAIACG--ADAVMLGSPLARAAEAPGRG 298 (368)
T ss_pred CCCeEEEeCCCCCHHHHHHHHHcC--CCeecccchhcccccCCCcc
Confidence 47899999999 677788877788 47888999999887766544
No 153
>cd00381 IMPDH IMPDH: The catalytic domain of the inosine monophosphate dehydrogenase. IMPDH catalyzes the NAD-dependent oxidation of inosine 5'-monophosphate (IMP) to xanthosine 5' monophosphate (XMP). It is a rate-limiting step in the de novo synthesis of the guanine nucleotides. There is often a CBS domain inserted in the middle of this domain, which is proposed to play a regulatory role. IMPDH is a key enzyme in the regulation of cell proliferation and differentiation. It has been identified as an attractive target for developing chemotherapeutic agents.
Probab=42.85 E-value=1.3e+02 Score=27.66 Aligned_cols=39 Identities=15% Similarity=0.220 Sum_probs=32.2
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCcccccCCCC
Q 026913 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQA 97 (231)
Q Consensus 57 ~v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~~~~~p 97 (231)
++.||++||+. ...|.+....| .++-.|||.|+.+...|
T Consensus 197 ~vpVIA~GGI~~~~di~kAla~G--A~~VmiGt~fa~t~Es~ 236 (325)
T cd00381 197 GVPVIADGGIRTSGDIVKALAAG--ADAVMLGSLLAGTDESP 236 (325)
T ss_pred CCcEEecCCCCCHHHHHHHHHcC--CCEEEecchhcccccCC
Confidence 46799999995 68888888888 46888999999977665
No 154
>smart00878 Biotin_carb_C Biotin carboxylase C-terminal domain. Biotin carboxylase is a component of the acetyl-CoA carboxylase multi-component enzyme which catalyses the first committed step in fatty acid synthesis in animals, plants and bacteria. Most of the active site residues reported in reference are in this C-terminal domain.
Probab=42.72 E-value=8.2 Score=30.10 Aligned_cols=33 Identities=18% Similarity=0.277 Sum_probs=25.3
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcc
Q 026913 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYL 90 (231)
Q Consensus 58 v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l 90 (231)
.|||+.|.==++.|.+|.+.=.+....||-|++
T Consensus 52 AKliv~g~~R~~A~~rl~~aL~e~~i~Gv~TN~ 84 (107)
T smart00878 52 AKLIVHGETREEAIARLRRALDEFRIEGVKTNI 84 (107)
T ss_pred eEEEEEcCCHHHHHHHHHHHHHhCEEECccCCH
Confidence 588998888888899888754445667787776
No 155
>PRK02615 thiamine-phosphate pyrophosphorylase; Provisional
Probab=42.51 E-value=26 Score=32.94 Aligned_cols=36 Identities=6% Similarity=0.134 Sum_probs=31.6
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 57 KMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
++.||+-||+|++.+.++...| .++++|++.+.++.
T Consensus 294 ~iPv~AiGGI~~~ni~~l~~~G--a~gVAvisaI~~a~ 329 (347)
T PRK02615 294 PIPWFAIGGIDKSNIPEVLQAG--AKRVAVVRAIMGAE 329 (347)
T ss_pred CCCEEEECCCCHHHHHHHHHcC--CcEEEEeHHHhCCC
Confidence 4689999999999999999888 68999999998753
No 156
>COG0800 Eda 2-keto-3-deoxy-6-phosphogluconate aldolase [Carbohydrate transport and metabolism]
Probab=42.20 E-value=1.2e+02 Score=26.81 Aligned_cols=75 Identities=23% Similarity=0.137 Sum_probs=43.3
Q ss_pred hHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHH--hH--hhCCCC-----CCCeEEEEeCCCCHHHHHHHH
Q 026913 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTI--EK--EFGVPD-----FEKMSITASNDLNEETLDALN 75 (231)
Q Consensus 5 v~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~--~~--~l~~~g-----~~~v~I~~S~~Lde~~i~~l~ 75 (231)
+..|+.++++|-+-|.+..=|=+-|-+..+..+.+++.+-++ |+ -|+-.- -...+.++|=++|++.++...
T Consensus 24 ~e~a~~~a~Ali~gGi~~IEITl~sp~a~e~I~~l~~~~p~~lIGAGTVL~~~q~~~a~~aGa~fiVsP~~~~ev~~~a~ 103 (211)
T COG0800 24 VEEALPLAKALIEGGIPAIEITLRTPAALEAIRALAKEFPEALIGAGTVLNPEQARQAIAAGAQFIVSPGLNPEVAKAAN 103 (211)
T ss_pred HHHHHHHHHHHHHcCCCeEEEecCCCCHHHHHHHHHHhCcccEEccccccCHHHHHHHHHcCCCEEECCCCCHHHHHHHH
Confidence 456778888888888888888888888666666555554322 11 000000 012355556666666666555
Q ss_pred hcCC
Q 026913 76 KQGH 79 (231)
Q Consensus 76 ~~g~ 79 (231)
+.|.
T Consensus 104 ~~~i 107 (211)
T COG0800 104 RYGI 107 (211)
T ss_pred hCCC
Confidence 5544
No 157
>PRK13361 molybdenum cofactor biosynthesis protein A; Provisional
Probab=41.77 E-value=1.5e+02 Score=26.93 Aligned_cols=63 Identities=19% Similarity=0.262 Sum_probs=40.1
Q ss_pred HHHHHHHhcCCCccEEeeCCCChHHHHH--------HHHHHHHHHhHhhCCCCCCCeEE--EEeCCCCHHHHHHHHh
Q 026913 10 AVALALNDLGYKAVGIRLDSGDLAYLSC--------EARKFFRTIEKEFGVPDFEKMSI--TASNDLNEETLDALNK 76 (231)
Q Consensus 10 ~va~~l~~~g~~~~gVRlDSGDl~~ls~--------~~r~~ld~~~~~l~~~g~~~v~I--~~S~~Lde~~i~~l~~ 76 (231)
..+.+|++.|.....|-+||.|.....+ ++.+.++.+. . .|+..++| ++..+.|.+.|.++.+
T Consensus 105 ~~~~~L~~aGl~~v~ISlDs~~~e~~~~i~~~g~~~~vl~~i~~~~---~-~Gi~~v~in~v~~~g~N~~ei~~~~~ 177 (329)
T PRK13361 105 RFAAELADAGLKRLNISLDTLRPELFAALTRNGRLERVIAGIDAAK---A-AGFERIKLNAVILRGQNDDEVLDLVE 177 (329)
T ss_pred HHHHHHHHcCCCeEEEEeccCCHHHhhhhcCCCCHHHHHHHHHHHH---H-cCCCceEEEEEEECCCCHHHHHHHHH
Confidence 4577888889888899999988654322 2333333321 1 26655554 4566788888888765
No 158
>PRK14565 triosephosphate isomerase; Provisional
Probab=40.88 E-value=72 Score=28.40 Aligned_cols=36 Identities=17% Similarity=0.289 Sum_probs=30.8
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
++++|+..|+++++-+.+|..+ ..+|++.||..-..
T Consensus 188 ~~~~IlYGGSV~~~N~~~l~~~-~~iDG~LvG~asl~ 223 (237)
T PRK14565 188 SKSHIIYGGSVNQENIRDLKSI-NQLSGVLVGSASLD 223 (237)
T ss_pred CCceEEEcCccCHhhHHHHhcC-CCCCEEEEechhhc
Confidence 5789999999999999999874 34899999987654
No 159
>PRK14024 phosphoribosyl isomerase A; Provisional
Probab=40.70 E-value=90 Score=27.27 Aligned_cols=72 Identities=24% Similarity=0.230 Sum_probs=46.3
Q ss_pred HHHHHHHHHHhcCCC-ccEEeeC----CCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCCc
Q 026913 7 NFCAVALALNDLGYK-AVGIRLD----SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHE 80 (231)
Q Consensus 7 naI~va~~l~~~g~~-~~gVRlD----SGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L-de~~i~~l~~~g~~ 80 (231)
+.+.+|+.+.+.|.+ +.-|=+| .++...+.+++. .+ -.+.+.+.||+ +.+.++++...|+
T Consensus 33 dp~~~a~~~~~~g~~~l~ivDLd~~~g~~~n~~~i~~i~---~~----------~~~pv~vgGGirs~edv~~~l~~Ga- 98 (241)
T PRK14024 33 SPLDAALAWQRDGAEWIHLVDLDAAFGRGSNRELLAEVV---GK----------LDVKVELSGGIRDDESLEAALATGC- 98 (241)
T ss_pred CHHHHHHHHHHCCCCEEEEEeccccCCCCccHHHHHHHH---HH----------cCCCEEEcCCCCCHHHHHHHHHCCC-
Confidence 667788888877754 3333333 333333322222 22 13578889888 5788899998885
Q ss_pred ccEEeeCCccccc
Q 026913 81 VDAFGIGTYLVTC 93 (231)
Q Consensus 81 id~fGvGT~l~~~ 93 (231)
+..++||.+.++
T Consensus 99 -~kvviGs~~l~~ 110 (241)
T PRK14024 99 -ARVNIGTAALEN 110 (241)
T ss_pred -CEEEECchHhCC
Confidence 567999999885
No 160
>cd01477 vWA_F09G8-8_type VWA F09G8.8 type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of mo
Probab=40.51 E-value=54 Score=27.83 Aligned_cols=37 Identities=14% Similarity=0.205 Sum_probs=26.5
Q ss_pred CCCCCeEEEEeCC------CCH-HHHHHHHhcCCcccEEeeCCc
Q 026913 53 PDFEKMSITASND------LNE-ETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 53 ~g~~~v~I~~S~~------Lde-~~i~~l~~~g~~id~fGvGT~ 89 (231)
++.+++-|+.++| -|. ....+|.++|..+-+.|||+.
T Consensus 129 ~~v~kvvIllTDg~~~~~~~~~~~~a~~l~~~GI~i~tVGiG~~ 172 (193)
T cd01477 129 ENYKKVVIVFASDYNDEGSNDPRPIAARLKSTGIAIITVAFTQD 172 (193)
T ss_pred CCCCeEEEEEecCccCCCCCCHHHHHHHHHHCCCEEEEEEeCCC
Confidence 3467778888753 233 345567788999999999985
No 161
>PRK06015 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=40.37 E-value=1.9e+02 Score=25.08 Aligned_cols=63 Identities=22% Similarity=0.178 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC
Q 026913 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (231)
Q Consensus 5 v~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~ 79 (231)
...|+.++++|.+.|.+..=|-++|.+-....+++++.+ +++.|=+.-=+|.+..+...+.|+
T Consensus 15 ~~~a~~ia~al~~gGi~~iEit~~tp~a~~~I~~l~~~~------------~~~~vGAGTVl~~e~a~~ai~aGA 77 (201)
T PRK06015 15 VEHAVPLARALAAGGLPAIEITLRTPAALDAIRAVAAEV------------EEAIVGAGTILNAKQFEDAAKAGS 77 (201)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCccHHHHHHHHHHHC------------CCCEEeeEeCcCHHHHHHHHHcCC
Confidence 456778888888888888888888877444333333222 344555555566666666655554
No 162
>TIGR01536 asn_synth_AEB asparagine synthase (glutamine-hydrolyzing). This model describes the glutamine-hydrolysing asparagine synthase. A poorly conserved C-terminal extension was removed from the model. Bacterial members of the family tend to have a long, poorly conserved insert lacking from archaeal and eukaryotic sequences. Multiple isozymes have been demonstrated, such as in Bacillus subtilis. Long-branch members of the phylogenetic tree (which typically were also second or third candidate members from their genomes) were removed from the seed alignment and score below trusted cutoff.
Probab=40.01 E-value=85 Score=30.01 Aligned_cols=56 Identities=18% Similarity=0.220 Sum_probs=40.8
Q ss_pred hHHHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcC---CcccEEeeCCc
Q 026913 32 LAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQG---HEVDAFGIGTY 89 (231)
Q Consensus 32 l~~ls~~~r~~ld~~-~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g---~~id~fGvGT~ 89 (231)
..+.+.++++.|.++ ..++. .-..+-+..|||+|=-.|..+..+- .++.+|.+|..
T Consensus 231 ~~~~~e~l~~~l~~aV~~r~~--~~~~vg~~LSGGlDSs~iaa~a~~~~~~~~~~~~t~~~~ 290 (467)
T TIGR01536 231 EEDLVDELRSLLEDAVKRRLV--ADVPVGVLLSGGLDSSLVAAIARREAPRGPVHTFSIGFE 290 (467)
T ss_pred HHHHHHHHHHHHHHHHHHHhc--cCCceEEEecCChhHHHHHHHHHHhcCCCCceEEEEecC
Confidence 445667788888887 44443 2245789999999999999887642 25788888764
No 163
>PTZ00077 asparagine synthetase-like protein; Provisional
Probab=39.88 E-value=83 Score=31.55 Aligned_cols=56 Identities=16% Similarity=0.102 Sum_probs=41.3
Q ss_pred hHHHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcC-------------CcccEEeeCCc
Q 026913 32 LAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQG-------------HEVDAFGIGTY 89 (231)
Q Consensus 32 l~~ls~~~r~~ld~~-~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g-------------~~id~fGvGT~ 89 (231)
......++|+.|.++ ..++..+ ..+-++.|||||=-.|..+..+- .++.+|-||..
T Consensus 215 ~~~~~~~lr~~L~~AV~~rl~sd--vpvGv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~~~l~tfsig~~ 284 (586)
T PTZ00077 215 GEIDLEEIREALEAAVRKRLMGD--VPFGLFLSGGLDSSIVAAIVAKLIKNGEIDLSKRGMPKLHSFCIGLE 284 (586)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCC--CceEEEecCCchHHHHHHHHHHhhcccccccccccCCCceEEEcCCC
Confidence 345566789999888 6666533 46789999999999999886531 34678888863
No 164
>cd01471 vWA_micronemal_protein Micronemal proteins: The Toxoplasma lytic cycle begins when the parasite actively invades a target cell. In association with invasion, T. gondii sequentially discharges three sets of secretory organelles beginning with the micronemes, which contain adhesive proteins involved in parasite attachment to a host cell. Deployed as protein complexes, several micronemal proteins possess vertebrate-derived adhesive sequences that function in binding receptors. The VWA domain likely mediates the protein-protein interactions of these with their interacting partners.
Probab=39.73 E-value=94 Score=25.27 Aligned_cols=37 Identities=14% Similarity=0.370 Sum_probs=26.7
Q ss_pred CCCCeEEEEeCCCCH------HHHHHHHhcCCcccEEeeCCcc
Q 026913 54 DFEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGTYL 90 (231)
Q Consensus 54 g~~~v~I~~S~~Lde------~~i~~l~~~g~~id~fGvGT~l 90 (231)
+..++-|++++|.+. +.+.++.+.|..+-.+|||+..
T Consensus 107 ~~~~~villTDG~~~~~~~~~~~a~~l~~~gv~v~~igiG~~~ 149 (186)
T cd01471 107 NAPQLVIIMTDGIPDSKFRTLKEARKLRERGVIIAVLGVGQGV 149 (186)
T ss_pred cCceEEEEEccCCCCCCcchhHHHHHHHHCCCEEEEEEeehhh
Confidence 445678888988752 3456777778888899999643
No 165
>PF01791 DeoC: DeoC/LacD family aldolase; InterPro: IPR002915 This family includes the enzyme deoxyribose-phosphate aldolase, which is involved in nucleotide metabolism. 2-deoxy-D-ribose 5-phosphate = D-glyceraldehyde 3-phosphate + acetaldehyde The family also includes a group of related bacterial proteins of unknown function, see examples Q57843 from SWISSPROT and P76143 from SWISSPROT.; GO: 0016829 lyase activity; PDB: 2A4A_A 1VCV_B 1P1X_A 1KTN_B 1JCL_A 1JCJ_A 1MZH_A 3GKF_D 3GLC_L 3GND_N ....
Probab=39.57 E-value=1.1e+02 Score=26.29 Aligned_cols=69 Identities=19% Similarity=0.201 Sum_probs=35.1
Q ss_pred hHHHHHHHHHHHhcCCCccEEeeCCC----ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHH-------H
Q 026913 5 VPNFCAVALALNDLGYKAVGIRLDSG----DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLD-------A 73 (231)
Q Consensus 5 v~naI~va~~l~~~g~~~~gVRlDSG----Dl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~-------~ 73 (231)
|.+|.+++.+ .|.. -|...+| .-..-...+++.... ..+| .+++|.+|||.+.+.+. +
T Consensus 148 I~~a~ria~e---~GaD--~vKt~tg~~~~~t~~~~~~~~~~~~~----~~~p--~~~~Vk~sGGi~~~~~~~~l~~a~~ 216 (236)
T PF01791_consen 148 IARAARIAAE---LGAD--FVKTSTGKPVGATPEDVELMRKAVEA----APVP--GKVGVKASGGIDAEDFLRTLEDALE 216 (236)
T ss_dssp HHHHHHHHHH---TT-S--EEEEE-SSSSCSHHHHHHHHHHHHHT----HSST--TTSEEEEESSSSHHHHHHSHHHHHH
T ss_pred HHHHHHHHHH---hCCC--EEEecCCccccccHHHHHHHHHHHHh----cCCC--cceEEEEeCCCChHHHHHHHHHHHH
Confidence 3455555544 4654 4777777 211122334444443 3333 36789999999655444 3
Q ss_pred HHhcCCcccEE
Q 026913 74 LNKQGHEVDAF 84 (231)
Q Consensus 74 l~~~g~~id~f 84 (231)
+.+.|+...++
T Consensus 217 ~i~aGa~~~G~ 227 (236)
T PF01791_consen 217 FIEAGADRIGT 227 (236)
T ss_dssp HHHTTHSEEEE
T ss_pred HHHcCChhHHH
Confidence 44567644333
No 166
>PRK13396 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=39.25 E-value=1.3e+02 Score=28.43 Aligned_cols=79 Identities=11% Similarity=0.136 Sum_probs=58.2
Q ss_pred HHHHHHHHHHHhcCCCc-cEEeeCC----CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026913 6 PNFCAVALALNDLGYKA-VGIRLDS----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (231)
Q Consensus 6 ~naI~va~~l~~~g~~~-~gVRlDS----GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~ 80 (231)
..++++|+.+++.|.++ .|-..+. ....-+..+-.++|.+++.++|++ ++|.=.|+..+..+.+.
T Consensus 115 eq~l~~A~~lk~~g~~~~r~g~~kpRtsp~sf~G~g~~gl~~L~~~~~e~Gl~-------~~tev~d~~~v~~~~~~--- 184 (352)
T PRK13396 115 EMIVETAKRVKAAGAKFLRGGAYKPRTSPYAFQGHGESALELLAAAREATGLG-------IITEVMDAADLEKIAEV--- 184 (352)
T ss_pred HHHHHHHHHHHHcCCCEEEeeeecCCCCCcccCCchHHHHHHHHHHHHHcCCc-------EEEeeCCHHHHHHHHhh---
Confidence 46788999999987664 1222221 333445677888999998888765 55778999999999876
Q ss_pred ccEEeeCCcccccC
Q 026913 81 VDAFGIGTYLVTCY 94 (231)
Q Consensus 81 id~fGvGT~l~~~~ 94 (231)
+|.+=||+..++..
T Consensus 185 ~d~lqIga~~~~n~ 198 (352)
T PRK13396 185 ADVIQVGARNMQNF 198 (352)
T ss_pred CCeEEECcccccCH
Confidence 79999999998853
No 167
>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational
Probab=38.90 E-value=1.9e+02 Score=24.19 Aligned_cols=64 Identities=25% Similarity=0.238 Sum_probs=37.7
Q ss_pred HHHHHHhcCCCccEEeeCCC-ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEe
Q 026913 11 VALALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 11 va~~l~~~g~~~~gVRlDSG-Dl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fG 85 (231)
+.+++++.|+.+. + .|++ |.......++.+... + -+.-|+++...+...+..+.+.|.|+..++
T Consensus 21 i~~~~~~~g~~~~-~-~~~~~~~~~~~~~~~~l~~~--------~-vdgiii~~~~~~~~~~~~l~~~~iPvv~~~ 85 (268)
T cd06273 21 FQETLAAHGYTLL-V-ASSGYDLDREYAQARKLLER--------G-VDGLALIGLDHSPALLDLLARRGVPYVATW 85 (268)
T ss_pred HHHHHHHCCCEEE-E-ecCCCCHHHHHHHHHHHHhc--------C-CCEEEEeCCCCCHHHHHHHHhCCCCEEEEc
Confidence 3556777887763 3 4554 444443334443332 2 344566666667788888888887765553
No 168
>PTZ00413 lipoate synthase; Provisional
Probab=38.53 E-value=1.2e+02 Score=29.33 Aligned_cols=66 Identities=15% Similarity=0.209 Sum_probs=42.7
Q ss_pred HHHHHHHHhcCCCc---cEE-eeC--CCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEe-CCC--CHHHHHHHHhcCC
Q 026913 9 CAVALALNDLGYKA---VGI-RLD--SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITAS-NDL--NEETLDALNKQGH 79 (231)
Q Consensus 9 I~va~~l~~~g~~~---~gV-RlD--SGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S-~~L--de~~i~~l~~~g~ 79 (231)
.++|++.++.|.+. ..+ |-| -|....++.-++++=.. .+++.|-++ +++ |++.+..|.+.|.
T Consensus 183 ~~vA~av~~~Gl~~~VVTSv~RDDL~D~ga~~~a~~I~~Ir~~---------~p~~~IevligDf~g~~e~l~~L~eAG~ 253 (398)
T PTZ00413 183 EKVAKAVAEMGVDYIVMTMVDRDDLPDGGASHVARCVELIKES---------NPELLLEALVGDFHGDLKSVEKLANSPL 253 (398)
T ss_pred HHHHHHHHHcCCCEEEEEEEcCCCCChhhHHHHHHHHHHHHcc---------CCCCeEEEcCCccccCHHHHHHHHhcCC
Confidence 36788888888764 244 533 35544444433333322 257899999 778 9999999999984
Q ss_pred cccEEe
Q 026913 80 EVDAFG 85 (231)
Q Consensus 80 ~id~fG 85 (231)
|.|.
T Consensus 254 --dvyn 257 (398)
T PTZ00413 254 --SVYA 257 (398)
T ss_pred --CEEe
Confidence 4554
No 169
>PRK05718 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=38.32 E-value=2e+02 Score=24.96 Aligned_cols=26 Identities=19% Similarity=0.189 Sum_probs=15.4
Q ss_pred HHHHHHHHHHHhcCCCccEEeeCCCC
Q 026913 6 PNFCAVALALNDLGYKAVGIRLDSGD 31 (231)
Q Consensus 6 ~naI~va~~l~~~g~~~~gVRlDSGD 31 (231)
..|+.++++|.+.|.+..=|-+.|-+
T Consensus 27 ~~a~~i~~al~~~Gi~~iEitl~~~~ 52 (212)
T PRK05718 27 EDAVPLAKALVAGGLPVLEVTLRTPA 52 (212)
T ss_pred HHHHHHHHHHHHcCCCEEEEecCCcc
Confidence 44566666666666665555555555
No 170
>TIGR03104 trio_amidotrans asparagine synthase family amidotransferase. Members of this protein family are closely related to several isoforms of asparagine synthetase (glutamine amidotransferase) and typically have been given this name in genome annotation to date. Each is part of a conserved three-gene cassette sparsely distributed across at least twenty different species known so far, including alpha, beta, and gamma Proteobacteria, Mycobacterium, and Prosthecochloris, which is a member of the Chlorobi. The other two members of the cassette are a probable protease and a member of the GNAT family of acetyltransferases.
Probab=37.78 E-value=1e+02 Score=30.76 Aligned_cols=55 Identities=16% Similarity=0.190 Sum_probs=40.2
Q ss_pred HHHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHHhc-C-CcccEEeeCCc
Q 026913 33 AYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQ-G-HEVDAFGIGTY 89 (231)
Q Consensus 33 ~~ls~~~r~~ld~~-~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~-g-~~id~fGvGT~ 89 (231)
.+...++++.|.++ ..++..+ ..|-++.|||||=-.|..+..+ + .++.+|-||..
T Consensus 239 ~~~~~~l~~~L~~AV~~rl~sd--~pvg~~LSGGlDSs~Iaa~~~~~~~~~l~tftigf~ 296 (589)
T TIGR03104 239 ADWQDAILEALRLAVKRRLVAD--VPVGVLLSGGLDSSLIVGLLAEAGVDGLRTFSIGFE 296 (589)
T ss_pred HHHHHHHHHHHHHHHHHHhhcC--CceeEEecCCccHHHHHHHHHHhcCCCceEEEEEec
Confidence 34455678888887 6666433 5678999999999999988653 2 36788888753
No 171
>cd04747 OYE_like_5_FMN Old yellow enzyme (OYE)-related FMN binding domain, group 5. Each monomer of OYE contains FMN as a non-covalently bound cofactor, uses NADPH as a reducing agent with oxygens, quinones, and alpha,beta-unsaturated aldehydes and ketones, and can act as electron acceptors in the catalytic reaction. Other members of OYE family include trimethylamine dehydrogenase, 2,4-dienoyl-CoA reductase, enoate reductase, pentaerythriol tetranitrate reductase, xenobiotic reductase, and morphinone reductase.
Probab=37.72 E-value=59 Score=30.61 Aligned_cols=36 Identities=14% Similarity=0.223 Sum_probs=26.2
Q ss_pred CeEEEEeCCC-------------------CHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 57 KMSITASNDL-------------------NEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~I~~S~~L-------------------de~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
++.|+++|++ +.+.+.++++.|. .|.-++|..++..
T Consensus 280 ~~pv~~~G~i~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~g~-~D~V~~gR~~iad 334 (361)
T cd04747 280 GLPTITVGSVGLDGDFIGAFAGDEGASPASLDRLLERLERGE-FDLVAVGRALLSD 334 (361)
T ss_pred CCCEEEECCcccccccccccccccccccCCHHHHHHHHHCCC-CCeehhhHHHHhC
Confidence 3568888887 6677777777654 6778888877763
No 172
>TIGR00433 bioB biotin synthetase. Catalyzes the last step of the biotin biosynthesis pathway.
Probab=37.68 E-value=2.8e+02 Score=24.38 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=22.3
Q ss_pred eEEEEe-CCCCHHHHHHHHhcCCcccEEeeCCc
Q 026913 58 MSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 58 v~I~~S-~~Lde~~i~~l~~~g~~id~fGvGT~ 89 (231)
+++.+| |-+|++.++.|.+.| ++.+.+|--
T Consensus 112 i~~~~~~g~~~~e~l~~Lk~aG--~~~v~i~~E 142 (296)
T TIGR00433 112 LKTCATLGLLDPEQAKRLKDAG--LDYYNHNLD 142 (296)
T ss_pred CeEEecCCCCCHHHHHHHHHcC--CCEEEEccc
Confidence 345555 678999999999999 566666643
No 173
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=37.58 E-value=1e+02 Score=30.42 Aligned_cols=72 Identities=17% Similarity=0.199 Sum_probs=47.9
Q ss_pred HHHHHHHHHHHhcCCCccEEeeCCCC-hHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEE
Q 026913 6 PNFCAVALALNDLGYKAVGIRLDSGD-LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 6 ~naI~va~~l~~~g~~~~gVRlDSGD-l~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~f 84 (231)
+.+.+-+.+|-+.|..+ |=+|+.+ -........+.+.+ -++++.|++.|=.+.+....+.+.|+....-
T Consensus 247 ~~~~~r~~~l~~ag~d~--i~iD~~~g~~~~~~~~i~~ik~--------~~p~~~vi~g~v~t~e~a~~a~~aGaD~i~v 316 (505)
T PLN02274 247 ESDKERLEHLVKAGVDV--VVLDSSQGDSIYQLEMIKYIKK--------TYPELDVIGGNVVTMYQAQNLIQAGVDGLRV 316 (505)
T ss_pred ccHHHHHHHHHHcCCCE--EEEeCCCCCcHHHHHHHHHHHH--------hCCCCcEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 45566678888888654 6668854 11222233344444 2467899999999999999999999755444
Q ss_pred eeC
Q 026913 85 GIG 87 (231)
Q Consensus 85 GvG 87 (231)
|+|
T Consensus 317 g~g 319 (505)
T PLN02274 317 GMG 319 (505)
T ss_pred CCC
Confidence 554
No 174
>COG3142 CutC Uncharacterized protein involved in copper resistance [Inorganic ion transport and metabolism]
Probab=37.38 E-value=50 Score=29.62 Aligned_cols=55 Identities=27% Similarity=0.395 Sum_probs=43.2
Q ss_pred cEEeeCCCChHHHHHHHHHHHHHH--hHhhCCCCCCCeEEEEeCCCCHHHHHHHHhc
Q 026913 23 VGIRLDSGDLAYLSCEARKFFRTI--EKEFGVPDFEKMSITASNDLNEETLDALNKQ 77 (231)
Q Consensus 23 ~gVRlDSGDl~~ls~~~r~~ld~~--~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~ 77 (231)
.=||+=+||..|-..+..-++++. ..++|.+|.--=-+-.-|.||...+++|.+.
T Consensus 56 ~MIRPRgGdFvY~~~E~~iM~~DI~~~~~lG~~GVV~G~lt~dg~iD~~~le~Li~a 112 (241)
T COG3142 56 VMIRPRGGDFVYSDDELEIMLEDIRLARELGVQGVVLGALTADGNIDMPRLEKLIEA 112 (241)
T ss_pred EEEecCCCCcccChHHHHHHHHHHHHHHHcCCCcEEEeeecCCCccCHHHHHHHHHH
Confidence 469999999999999988888877 6667777632223445689999999999874
No 175
>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs. Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.
Probab=37.35 E-value=1.9e+02 Score=24.49 Aligned_cols=64 Identities=20% Similarity=0.024 Sum_probs=39.0
Q ss_pred HHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEe
Q 026913 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 12 a~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fG 85 (231)
..++++.|+.+.-...| +.......++..+.. +.-+.-|+.+...|...+.++.+.|.|+..++
T Consensus 22 ~~~~~~~gy~~~~~~~~--~~~~~~~~~~~~l~~--------~~vdgvi~~~~~~~~~~~~~l~~~~iPvv~~~ 85 (269)
T cd06297 22 EGALLEQRYDLALFPLL--SLARLKRYLESTTLA--------YLTDGLLLASYDLTERLAERRLPTERPVVLVD 85 (269)
T ss_pred HHHHHHCCCEEEEEeCC--CcHHHHHHHHHHHHh--------cCCCEEEEecCccChHHHHHHhhcCCCEEEEc
Confidence 44566778887555444 322332333333433 22344677777788888888888888877775
No 176
>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh
Probab=37.21 E-value=2.3e+02 Score=23.46 Aligned_cols=63 Identities=17% Similarity=0.208 Sum_probs=37.5
Q ss_pred HHHHhcCCCccEEeeCCC-ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEee
Q 026913 13 LALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 13 ~~l~~~g~~~~gVRlDSG-Dl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGv 86 (231)
.++++.|+.+ +..++. |.......++++... + -+.-|+.+...+...+..+.+.|.|+..+|.
T Consensus 23 ~~~~~~g~~~--~~~~~~~~~~~~~~~i~~l~~~--------~-~dgii~~~~~~~~~~~~~~~~~~ipvv~~~~ 86 (259)
T cd01542 23 AALYENGYQM--LLMNTNFSIEKEIEALELLARQ--------K-VDGIILLATTITDEHREAIKKLNVPVVVVGQ 86 (259)
T ss_pred HHHHHCCCEE--EEEeCCCCHHHHHHHHHHHHhc--------C-CCEEEEeCCCCCHHHHHHHhcCCCCEEEEec
Confidence 4456678765 455654 554444444443332 3 3435666666667777888888888777764
No 177
>PRK05465 ethanolamine ammonia-lyase small subunit; Provisional
Probab=36.83 E-value=42 Score=30.45 Aligned_cols=43 Identities=23% Similarity=0.264 Sum_probs=29.6
Q ss_pred EEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHH
Q 026913 24 GIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDA 73 (231)
Q Consensus 24 gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~ 73 (231)
=-|+|.|- .|+...++.|.+. .+.-.+|.|++||||+-..|..
T Consensus 85 L~RPDLGR--~L~~~s~~~L~~~-----~~~~~Dv~iViaDGLSa~Av~~ 127 (260)
T PRK05465 85 LTRPDLGR--RLSDESREALKAQ-----CGKNPDVQIVVADGLSALAVEA 127 (260)
T ss_pred hcCCCCCC--CCCHHHHHHHHHh-----cCCCCcEEEEEcCCCCHHHHHH
Confidence 35788886 3455566667653 1133589999999999887763
No 178
>smart00633 Glyco_10 Glycosyl hydrolase family 10.
Probab=36.75 E-value=96 Score=27.13 Aligned_cols=36 Identities=22% Similarity=0.348 Sum_probs=26.7
Q ss_pred CCeEEEEeCCCC-----------HHHHHHHHhcCCcccEEeeCCcccc
Q 026913 56 EKMSITASNDLN-----------EETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 56 ~~v~I~~S~~Ld-----------e~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
++++++.. +.+ .+-+++|.++|+++|+.|+=.|+..
T Consensus 117 P~a~l~~N-dy~~~~~~~k~~~~~~~v~~l~~~g~~iDgiGlQ~H~~~ 163 (254)
T smart00633 117 PDAKLFYN-DYNTEEPNAKRQAIYELVKKLKAKGVPIDGIGLQSHLSL 163 (254)
T ss_pred CCCEEEEe-ccCCcCccHHHHHHHHHHHHHHHCCCccceeeeeeeecC
Confidence 67888885 333 4556677788999999999777654
No 179
>cd01454 vWA_norD_type norD type: Denitrifying bacteria contain both membrane bound and periplasmic nitrate reductases. Denitrification plays a major role in completing the nitrogen cycle by converting nitrate or nitrite to nitrogen gas. The pathway for microbial denitrification has been established as NO3- ------ NO2- ------ NO ------- N2O --------- N2. This reaction generally occurs under oxygen limiting conditions. Genetic and biochemical studies have shown that the first srep of the biochemical pathway is catalyzed by periplasmic nitrate reductases. This family is widely present in proteobacteria and firmicutes. This version of the domain is also present in some archaeal members. The function of the vWA domain in this sub-group is not known. Members of this subgroup have a conserved MIDAS motif.
Probab=36.72 E-value=56 Score=26.43 Aligned_cols=38 Identities=21% Similarity=0.143 Sum_probs=27.9
Q ss_pred CCCeEEEEeCCCCHH-------------H---HHHHHhcCCcccEEeeCCcccc
Q 026913 55 FEKMSITASNDLNEE-------------T---LDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 55 ~~~v~I~~S~~Lde~-------------~---i~~l~~~g~~id~fGvGT~l~~ 92 (231)
-..+-|++|+|.+.. . ++++.+.|..+-+.|||+...+
T Consensus 103 ~~~~iiliTDG~~~~~~~~~~~~~~~~~~~~~~~~~~~~gi~v~~igig~~~~~ 156 (174)
T cd01454 103 KRKILLVISDGEPNDLDYYEGNVFATEDALRAVIEARKLGIEVFGITIDRDATT 156 (174)
T ss_pred cCcEEEEEeCCCcCcccccCcchhHHHHHHHHHHHHHhCCcEEEEEEecCcccc
Confidence 456789999998742 2 5666677888888899987753
No 180
>cd00958 DhnA Class I fructose-1,6-bisphosphate (FBP) aldolases of the archaeal type (DhnA homologs) found in bacteria and archaea. Catalysis of the enzymes proceeds via a Schiff-base mechanism like other class I aldolases, although this subfamily is clearly divergent based on sequence similarity to other class I and class II (metal dependent) aldolase subfamilies.
Probab=36.71 E-value=1.9e+02 Score=24.77 Aligned_cols=36 Identities=6% Similarity=0.136 Sum_probs=25.8
Q ss_pred eEEEEeCCCCH-------HHHHHHHhcCCcccEEeeCCcccccCC
Q 026913 58 MSITASNDLNE-------ETLDALNKQGHEVDAFGIGTYLVTCYA 95 (231)
Q Consensus 58 v~I~~S~~Lde-------~~i~~l~~~g~~id~fGvGT~l~~~~~ 95 (231)
+.|+++||+.. +.+..+.+.|+ +++-+|+++.++.+
T Consensus 180 ~pvv~~GG~~~~~~~~~l~~~~~~~~~Ga--~gv~vg~~i~~~~d 222 (235)
T cd00958 180 VPVVIAGGPKKDSEEEFLKMVYDAMEAGA--AGVAVGRNIFQRPD 222 (235)
T ss_pred CCEEEeCCCCCCCHHHHHHHHHHHHHcCC--cEEEechhhhcCCC
Confidence 34788888643 55777888884 58888999887553
No 181
>PRK11572 copper homeostasis protein CutC; Provisional
Probab=36.59 E-value=49 Score=29.79 Aligned_cols=55 Identities=18% Similarity=0.308 Sum_probs=40.1
Q ss_pred cEEeeCCCChHHHHHHHHHHHHHH--hHhhCCCCCCCeEEEEeCCCCHHHHHHHHhc
Q 026913 23 VGIRLDSGDLAYLSCEARKFFRTI--EKEFGVPDFEKMSITASNDLNEETLDALNKQ 77 (231)
Q Consensus 23 ~gVRlDSGDl~~ls~~~r~~ld~~--~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~ 77 (231)
.=||+-+||..|=..++..+..++ ..++|.+|+===-+--.|.+|.+.+++|.+.
T Consensus 56 vMIRPR~gdF~Ys~~E~~~M~~di~~~~~~GadGvV~G~L~~dg~vD~~~~~~Li~~ 112 (248)
T PRK11572 56 PIIRPRGGDFCYSDGEFAAMLEDIATVRELGFPGLVTGVLDVDGHVDMPRMRKIMAA 112 (248)
T ss_pred EEEecCCCCCCCCHHHHHHHHHHHHHHHHcCCCEEEEeeECCCCCcCHHHHHHHHHH
Confidence 479999999999999988888887 4556666521000011689999999999874
No 182
>PF00977 His_biosynth: Histidine biosynthesis protein; InterPro: IPR006062 Histidine is formed by several complex and distinct biochemical reactions catalysed by eight enzymes. Proteins involved in steps 4 and 6 of the histidine biosynthesis pathway are contained in one family. These enzymes are called His6 and His7 in eukaryotes and HisA and HisF in prokaryotes. HisA is a phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (5.3.1.16 from EC), involved in the fourth step of histidine biosynthesis. The bacterial HisF protein is a cyclase which catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate during the sixth step of histidine biosynthesis. The yeast His7 protein is a bifunctional protein which catalyzes an amido-transferase reaction that generates imidazole-glycerol phosphate and 5-aminoimidazol-4-carboxamide. The latter is the ribonucleotide used for purine biosynthesis. The enzyme also catalyzes the cyclization reaction that produces D-erythro-imidazole glycerol phosphate, and is involved in the fifth and sixth steps in histidine biosynthesis.; GO: 0000105 histidine biosynthetic process; PDB: 2VEP_A 2X30_A 1VZW_A 2WJZ_A 2LLE_A 2A0N_A 1THF_D 1GPW_E 1VH7_A 1KA9_F ....
Probab=36.54 E-value=63 Score=28.04 Aligned_cols=34 Identities=29% Similarity=0.469 Sum_probs=27.8
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
++.+++|||+ +.+.|.++.+.| +++.=||+.|-.
T Consensus 191 ~~~viasGGv~~~~Dl~~l~~~G--~~gvivg~al~~ 225 (229)
T PF00977_consen 191 NIPVIASGGVRSLEDLRELKKAG--IDGVIVGSALHE 225 (229)
T ss_dssp SSEEEEESS--SHHHHHHHHHTT--ECEEEESHHHHT
T ss_pred CCCEEEecCCCCHHHHHHHHHCC--CcEEEEehHhhC
Confidence 4599999999 899999999888 578888887743
No 183
>PRK14905 triosephosphate isomerase/PTS system glucose/sucrose-specific transporter subunit IIB; Provisional
Probab=36.36 E-value=1.3e+02 Score=28.41 Aligned_cols=37 Identities=19% Similarity=0.215 Sum_probs=31.6
Q ss_pred CCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 55 FEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 55 ~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
-++++|+..|+.+.+-+.+|..+ ..+|++.||+.-..
T Consensus 211 ~~~v~ILYGGSV~~~N~~~l~~~-~~iDG~LVG~asl~ 247 (355)
T PRK14905 211 SKKIPVLYGGSVNLENANELIMK-PHIDGLFIGRSAWD 247 (355)
T ss_pred cCceeEEEeCcCCHHHHHHHhcC-CCCCEEEechhhcc
Confidence 35799999999999999999765 34899999988765
No 184
>cd04731 HisF The cyclase subunit of imidazoleglycerol phosphate synthase (HisF). Imidazole glycerol phosphate synthase (IGPS) catalyzes the fifth step of histidine biosynthesis, the formation of the imidazole ring. IGPS converts N1-(5'-phosphoribulosyl)-formimino-5-aminoimidazole-4-carboxamide ribonucleotide (PRFAR) to imidazole glycerol phosphate (ImGP) and 5'-(5-aminoimidazole-4-carboxamide) ribonucleotide (AICAR). This conversion involves two tightly coupled reactions in distinct active sites of IGPS. The two catalytic domains can be fused, like in fungi and plants, or peformed by a heterodimer (HisH-glutaminase and HisF-cyclase), like in bacteria.
Probab=36.34 E-value=1.4e+02 Score=25.69 Aligned_cols=72 Identities=15% Similarity=0.177 Sum_probs=45.4
Q ss_pred HHHHHHHHHHhcCCC-ccEEeeCC-----CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCC
Q 026913 7 NFCAVALALNDLGYK-AVGIRLDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGH 79 (231)
Q Consensus 7 naI~va~~l~~~g~~-~~gVRlDS-----GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld-e~~i~~l~~~g~ 79 (231)
+.+.+++.+.+.|.. +.-+=+|. |....+. +++-++ .++.|+++||+. .+.+.++.+.|
T Consensus 28 d~~~~a~~~~~~G~~~i~i~d~~~~~~~~~~~~~~i---~~i~~~----------~~~pv~~~GGI~s~~d~~~~l~~G- 93 (243)
T cd04731 28 DPVELAKRYNEQGADELVFLDITASSEGRETMLDVV---ERVAEE----------VFIPLTVGGGIRSLEDARRLLRAG- 93 (243)
T ss_pred CHHHHHHHHHHCCCCEEEEEcCCcccccCcccHHHH---HHHHHh----------CCCCEEEeCCCCCHHHHHHHHHcC-
Confidence 567888888888765 22333442 2212222 222222 235799999997 67888888877
Q ss_pred cccEEeeCCccccc
Q 026913 80 EVDAFGIGTYLVTC 93 (231)
Q Consensus 80 ~id~fGvGT~l~~~ 93 (231)
++..-+|+.+..+
T Consensus 94 -~~~v~ig~~~~~~ 106 (243)
T cd04731 94 -ADKVSINSAAVEN 106 (243)
T ss_pred -CceEEECchhhhC
Confidence 5667788888764
No 185
>TIGR02814 pfaD_fam PfaD family protein. The protein PfaD is part of four gene locus, similar to polyketide biosynthesis systems, responsible for omega-3 polyunsaturated fatty acid biosynthesis in several high pressure and/or cold-adapted bacteria. Several other members of the seed alignment for this model are found in loci presumed to act in polyketide biosyntheses per se.
Probab=36.26 E-value=1.6e+02 Score=28.66 Aligned_cols=63 Identities=14% Similarity=0.158 Sum_probs=44.2
Q ss_pred CChHHHHHHHHHHHHHHhHhhCCCCCC-CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccccCCCC
Q 026913 30 GDLAYLSCEARKFFRTIEKEFGVPDFE-KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQA 97 (231)
Q Consensus 30 GDl~~ls~~~r~~ld~~~~~l~~~g~~-~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~~~~p 97 (231)
..+..|...++++-|+...+. ++. .+.|++.||| |.+.+......|+ |+-=+||.+..|....
T Consensus 199 ~~~~~Llp~i~~lrd~v~~~~---~y~~~VpViAAGGI~t~~~vaAAlaLGA--dgV~~GT~flat~Esg 263 (444)
T TIGR02814 199 RPLVVLLPAIIRLRDTLMRRY---GYRKPIRVGAAGGIGTPEAAAAAFMLGA--DFIVTGSVNQCTVEAG 263 (444)
T ss_pred CcHHHHHHHHHHHHHHHhhcc---cCCCCceEEEeCCCCCHHHHHHHHHcCC--cEEEeccHHHhCcccc
Confidence 345556556655545543322 333 5889999999 9999999999995 5777999998876543
No 186
>PLN02561 triosephosphate isomerase
Probab=36.19 E-value=1e+02 Score=27.68 Aligned_cols=34 Identities=21% Similarity=0.256 Sum_probs=28.7
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcc
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYL 90 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l 90 (231)
++++|+..|+++.+-+.+|..+ ..+|++.||+.=
T Consensus 203 ~~i~ILYGGSV~~~N~~~l~~~-~~iDG~LVG~AS 236 (253)
T PLN02561 203 ATTRIIYGGSVTGANCKELAAQ-PDVDGFLVGGAS 236 (253)
T ss_pred ccceEEEeCCcCHHHHHHHhcC-CCCCeEEEehHh
Confidence 5789999999999999999765 238999999754
No 187
>COG1058 CinA Predicted nucleotide-utilizing enzyme related to molybdopterin-biosynthesis enzyme MoeA [General function prediction only]
Probab=36.13 E-value=1.1e+02 Score=27.62 Aligned_cols=50 Identities=16% Similarity=0.137 Sum_probs=35.7
Q ss_pred HHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC
Q 026913 6 PNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL 66 (231)
Q Consensus 6 ~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L 66 (231)
.||--+|+.|.+.|+.+.=++.=-=|+..+...+|..+.. .+ -||.||||
T Consensus 21 tNa~~la~~L~~~G~~v~~~~~VgD~~~~I~~~l~~a~~r----------~D-~vI~tGGL 70 (255)
T COG1058 21 TNAAFLADELTELGVDLARITTVGDNPDRIVEALREASER----------AD-VVITTGGL 70 (255)
T ss_pred chHHHHHHHHHhcCceEEEEEecCCCHHHHHHHHHHHHhC----------CC-EEEECCCc
Confidence 3788889999999998866665444566776666666655 35 67778876
No 188
>PRK08207 coproporphyrinogen III oxidase; Provisional
Probab=35.91 E-value=1.1e+02 Score=29.89 Aligned_cols=69 Identities=23% Similarity=0.390 Sum_probs=42.4
Q ss_pred CCccEEeeCCCChHHHHH-HHHHHHHHHhHhh-CCCCCCCeEEEEe--CCCCHHHHHHHHhcCCcccEEeeCC
Q 026913 20 YKAVGIRLDSGDLAYLSC-EARKFFRTIEKEF-GVPDFEKMSITAS--NDLNEETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 20 ~~~~gVRlDSGDl~~ls~-~~r~~ld~~~~~l-~~~g~~~v~I~~S--~~Lde~~i~~l~~~g~~id~fGvGT 88 (231)
.++..|=+--|.|..++. ++.++++.+...+ +..+...+.+-++ +.+|++.++.|.+.|....++|+=|
T Consensus 217 ~~v~tIyfGGGTPt~L~~~~L~~Ll~~i~~~f~~~~~~~EiTvE~grPd~it~e~L~~Lk~~Gv~RISIGvQS 289 (488)
T PRK08207 217 LKITTIYFGGGTPTSLTAEELERLLEEIYENFPDVKNVKEFTVEAGRPDTITEEKLEVLKKYGVDRISINPQT 289 (488)
T ss_pred CceeEEEEeCCCccCCCHHHHHHHHHHHHHhccccCCceEEEEEcCCCCCCCHHHHHHHHhcCCCeEEEcCCc
Confidence 344455555688876653 3666666665445 4444444344332 3799999999999986555555543
No 189
>TIGR01304 IMP_DH_rel_2 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase. Most species with a member of this family belong to the high GC Gram-positive bacteria, and these also have the IMP dehydrogenase described by TIGRFAMs equivalog model TIGR01302.
Probab=35.72 E-value=79 Score=29.97 Aligned_cols=59 Identities=15% Similarity=0.205 Sum_probs=42.4
Q ss_pred HHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCcccccCCCCccceEEEEeE
Q 026913 40 RKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVE 107 (231)
Q Consensus 40 r~~ld~~~~~l~~~g~~~v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~vyKlv~ 107 (231)
++.+++. |-.++.||++||+. -..|.+....| .|+-.|||.++.....|.-++-+-..+
T Consensus 245 ~~~~~e~-------g~r~vpVIAdGGI~tg~di~kAlAlG--AdaV~iGt~~a~a~Eapg~~~~w~~~~ 304 (369)
T TIGR01304 245 RDYLDET-------GGRYVHVIADGGIETSGDLVKAIACG--ADAVVLGSPLARAAEAPGRGYFWPAAA 304 (369)
T ss_pred HHHHHhc-------CCCCceEEEeCCCCCHHHHHHHHHcC--CCEeeeHHHHHhhhcCCCCCCccchhh
Confidence 3456665 44568999999984 56666666678 578999999999887777666554443
No 190
>PF05985 EutC: Ethanolamine ammonia-lyase light chain (EutC); InterPro: IPR009246 This family consists of several bacterial ethanolamine ammonia-lyase light chain (EutC) sequences. Ethanolamine ammonia-lyase is a bacterial enzyme that catalyses the adenosylcobalamin-dependent conversion of certain vicinal amino alcohols to oxo compounds and ammonia [].; GO: 0008851 ethanolamine ammonia-lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3ABO_B 3ABR_B 3ABS_B 3ANY_B 3AO0_D 3ABQ_B.
Probab=35.64 E-value=19 Score=32.26 Aligned_cols=40 Identities=23% Similarity=0.355 Sum_probs=23.8
Q ss_pred eeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHH
Q 026913 26 RLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLD 72 (231)
Q Consensus 26 RlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~ 72 (231)
|+|.|- .|+.+.++.|.+... ++ .+|.|++||||+-..|.
T Consensus 80 RPDlGR--~L~~~s~~~L~~~~~----~~-~Dv~iViaDGLSa~Av~ 119 (237)
T PF05985_consen 80 RPDLGR--RLSEESRARLKELCE----KG-PDVQIVIADGLSARAVE 119 (237)
T ss_dssp -HHHHT--SB-HHHHHHHHHHS-----SS--SEEEEEE-TT-HHHHH
T ss_pred CCCCCC--cCCHHHHHHHHHhcC----CC-CCEEEEEcCCCCHHHHH
Confidence 455554 346666777777521 13 78999999999998884
No 191
>PRK10415 tRNA-dihydrouridine synthase B; Provisional
Probab=35.57 E-value=1.5e+02 Score=27.19 Aligned_cols=34 Identities=24% Similarity=0.304 Sum_probs=24.7
Q ss_pred CeEEEEeCCC-CHHHHHHHHhc-CCcccEEeeCCcccc
Q 026913 57 KMSITASNDL-NEETLDALNKQ-GHEVDAFGIGTYLVT 92 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~-g~~id~fGvGT~l~~ 92 (231)
++.|+++||+ +.+.+.++.++ | +|+..||+.+..
T Consensus 194 ~iPVI~nGgI~s~~da~~~l~~~g--adgVmiGR~~l~ 229 (321)
T PRK10415 194 SIPVIANGDITDPLKARAVLDYTG--ADALMIGRAAQG 229 (321)
T ss_pred CCcEEEeCCCCCHHHHHHHHhccC--CCEEEEChHhhc
Confidence 3578888888 77777777754 4 677778877765
No 192
>PLN02591 tryptophan synthase
Probab=35.21 E-value=45 Score=29.81 Aligned_cols=35 Identities=14% Similarity=0.266 Sum_probs=30.8
Q ss_pred CCeEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCcccc
Q 026913 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 56 ~~v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
+++.|++.-|+. .+.++++.+.| .|+.-|||.++.
T Consensus 188 ~~~Pv~vGFGI~~~e~v~~~~~~G--ADGvIVGSalVk 223 (250)
T PLN02591 188 TDKPVAVGFGISKPEHAKQIAGWG--ADGVIVGSAMVK 223 (250)
T ss_pred CCCceEEeCCCCCHHHHHHHHhcC--CCEEEECHHHHH
Confidence 677899999998 99999999888 589999999976
No 193
>cd05294 LDH-like_MDH_nadp A lactate dehydrogenases-like structure with malate dehydrogenase enzymatic activity. The LDH-like MDH proteins have a lactate dehyhydrogenase-like (LDH-like) structure and malate dehydrogenase (MDH) enzymatic activity. This subgroup is composed of some archaeal LDH-like MDHs that prefer NADP(H) rather than NAD(H) as a cofactor. One member, MJ0490 from Methanococcus jannaschii, has been observed to form dimers and tetramers during crystalization, although it is believed to exist primarilly as a tetramer in solution. In addition to its MDH activity, MJ0490 also possesses fructose-1,6-bisphosphate-activated LDH activity. Members of this subgroup have a higher sequence similarity to LDHs than to other MDHs. LDH catalyzes the last step of glycolysis in which pyruvate is converted to L-lactate. MDH is one of the key enzymes in the citric acid cycle, facilitating both the conversion of malate to oxaloacetate and replenishing levels of oxalacetate by reductive carbox
Probab=34.88 E-value=91 Score=28.38 Aligned_cols=57 Identities=23% Similarity=0.318 Sum_probs=34.5
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC-cccEEeeCCcc
Q 026913 34 YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH-EVDAFGIGTYL 90 (231)
Q Consensus 34 ~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~-~id~fGvGT~l 90 (231)
.+...-.+++.+++..+.-.+.+.+-|+++|-.|.-+-.-....|. +...||+||.|
T Consensus 92 dl~~~n~~i~~~~~~~i~~~~~~~~viv~~npvd~~t~~~~~~~g~~~~~viG~gt~L 149 (309)
T cd05294 92 DLAKKNAKIVKKYAKQIAEFAPDTKILVVTNPVDVMTYKALKESGFDKNRVFGLGTHL 149 (309)
T ss_pred HHHHHHHHHHHHHHHHHHHHCCCeEEEEeCCchHHHHHHHHHhcCCCHHHEeeccchH
Confidence 3333333444444444433355567888888888766444444565 47789999977
No 194
>COG1059 Thermostable 8-oxoguanine DNA glycosylase [DNA replication, recombination, and repair]
Probab=34.84 E-value=38 Score=29.63 Aligned_cols=57 Identities=30% Similarity=0.410 Sum_probs=38.7
Q ss_pred HHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCc
Q 026913 11 VALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 11 va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~ 89 (231)
+...|+..|++++.+| +....++|+.+++. ++++..+=++...++++-. +..|+|-.
T Consensus 76 L~e~Lk~~g~Rf~n~r------aeyIVeaR~~~~~l------------k~~v~~~~~~~vaRE~Lv~----nikGiGyK 132 (210)
T COG1059 76 LREKLKEVGYRFYNVR------AEYIVEAREKFDDL------------KIIVKADENEKVARELLVE----NIKGIGYK 132 (210)
T ss_pred HHHHHHHhcchhcccc------hHHHHHHHHHHHHH------------HHHHhcCcchHHHHHHHHH----HcccccHH
Confidence 4455677888888887 34566677777654 5566667778778887643 57777743
No 195
>TIGR01306 GMP_reduct_2 guanosine monophosphate reductase, bacterial. A deep split separates two families of GMP reductase. The other (TIGR01305) is found in eukaryotic and some proteobacterial lineages, including E. coli, while this family is found in a variety of bacterial lineages.
Probab=34.81 E-value=3.4e+02 Score=25.25 Aligned_cols=72 Identities=19% Similarity=0.250 Sum_probs=47.8
Q ss_pred HHHHHHHHHHhcCCCccEEeeCC--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEE
Q 026913 7 NFCAVALALNDLGYKAVGIRLDS--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 7 naI~va~~l~~~g~~~~gVRlDS--GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~f 84 (231)
+.++...+|-+.|.....|=+|| |. |..+.+.+.....+ ++...|++.|=.+.+..+.|.+.|+....-
T Consensus 94 e~~~r~~~lv~a~~~~d~i~~D~ahg~----s~~~~~~i~~i~~~-----~p~~~vi~GnV~t~e~a~~l~~aGad~I~V 164 (321)
T TIGR01306 94 CEYEFVTQLAEEALTPEYITIDIAHGH----SNSVINMIKHIKTH-----LPDSFVIAGNVGTPEAVRELENAGADATKV 164 (321)
T ss_pred HHHHHHHHHHhcCCCCCEEEEeCccCc----hHHHHHHHHHHHHh-----CCCCEEEEecCCCHHHHHHHHHcCcCEEEE
Confidence 34455666777775456788899 87 44544444444332 345568888888999999999999754444
Q ss_pred eeC
Q 026913 85 GIG 87 (231)
Q Consensus 85 GvG 87 (231)
|+|
T Consensus 165 ~~G 167 (321)
T TIGR01306 165 GIG 167 (321)
T ss_pred CCC
Confidence 544
No 196
>PF15560 Imm8: Immunity protein 8
Probab=34.58 E-value=45 Score=27.21 Aligned_cols=39 Identities=21% Similarity=0.244 Sum_probs=29.5
Q ss_pred ChHHHHHHHHHHHHHHhHhhCCCCCCCeE--EEEeCCCCHH
Q 026913 31 DLAYLSCEARKFFRTIEKEFGVPDFEKMS--ITASNDLNEE 69 (231)
Q Consensus 31 Dl~~ls~~~r~~ld~~~~~l~~~g~~~v~--I~~S~~Lde~ 69 (231)
++..+++++|+.|.+.=..+...|+..++ +++|||+.++
T Consensus 18 ~~~~~ir~mRk~lKk~F~~~~~e~l~k~kI~l~~sGdvS~Y 58 (133)
T PF15560_consen 18 NLHSLIREMRKSLKKQFESIEFEGLDKIKINLYFSGDVSSY 58 (133)
T ss_pred HHHHHHHHHHHHHHHHHHhhhHhhhhhEeEEEEEcCchhhh
Confidence 56788999999999875555666877755 5679998775
No 197
>PRK09057 coproporphyrinogen III oxidase; Provisional
Probab=34.37 E-value=1.9e+02 Score=27.03 Aligned_cols=70 Identities=11% Similarity=0.218 Sum_probs=52.3
Q ss_pred CCccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCcccEEeeCCc
Q 026913 20 YKAVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 20 ~~~~gVRlDSGDl~~ls-~~~r~~ld~~~~~l~~~g~~~v~I~~S-~~Lde~~i~~l~~~g~~id~fGvGT~ 89 (231)
.++.-|-+=-|+|..|+ .+.+++++.+...|+.....++.|=+. +.++.+.++.|.+.|..-.++||=|.
T Consensus 54 ~~i~tiy~GGGTPs~l~~~~L~~ll~~i~~~f~~~~~~eit~E~~P~~i~~e~L~~l~~~GvnrislGvQS~ 125 (380)
T PRK09057 54 RTLTSIFFGGGTPSLMQPETVAALLDAIARLWPVADDIEITLEANPTSVEAGRFRGYRAAGVNRVSLGVQAL 125 (380)
T ss_pred CCcCeEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCccEEEEECcCcCCHHHHHHHHHcCCCEEEEecccC
Confidence 45667777779998885 457888888877776654445555444 78999999999999987778887654
No 198
>PRK05660 HemN family oxidoreductase; Provisional
Probab=34.25 E-value=1.6e+02 Score=27.54 Aligned_cols=70 Identities=9% Similarity=0.257 Sum_probs=50.3
Q ss_pred CCccEEeeCCCChHHHHH-HHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCcccEEeeCCc
Q 026913 20 YKAVGIRLDSGDLAYLSC-EARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 20 ~~~~gVRlDSGDl~~ls~-~~r~~ld~~~~~l~~~g~~~v~I~~S-~~Lde~~i~~l~~~g~~id~fGvGT~ 89 (231)
..+.-|-+=-|.|..|+. .+.++++.+...+++..-..+.|-+. +.++++.+..|.+.|....++||=+.
T Consensus 57 ~~v~ti~~GGGtPs~l~~~~l~~ll~~l~~~~~~~~~~eit~e~np~~l~~e~l~~Lk~~Gv~risiGvqS~ 128 (378)
T PRK05660 57 REVHSIFIGGGTPSLFSAEAIQRLLDGVRARLPFAPDAEITMEANPGTVEADRFVGYQRAGVNRISIGVQSF 128 (378)
T ss_pred CceeEEEeCCCccccCCHHHHHHHHHHHHHhCCCCCCcEEEEEeCcCcCCHHHHHHHHHcCCCEEEeccCcC
Confidence 445677777799988854 46777777776676543345666665 78999999999999976667776443
No 199
>PLN02411 12-oxophytodienoate reductase
Probab=34.24 E-value=1.4e+02 Score=28.22 Aligned_cols=51 Identities=18% Similarity=0.191 Sum_probs=38.8
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccCCCCccceEEEEeEECCcccccc
Q 026913 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLVEINKQPRIKL 116 (231)
Q Consensus 58 v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~vyKlv~~~g~p~~K~ 116 (231)
+.++++|+++.+..+++.++|. .|..++|-.++.+. +++-|+- +|+|..+.
T Consensus 314 ~pvi~~G~i~~~~a~~~l~~g~-aDlV~~gR~~iadP-----dl~~k~~--~g~~l~~~ 364 (391)
T PLN02411 314 GTFMCSGGFTRELGMQAVQQGD-ADLVSYGRLFISNP-----DLVLRFK--LNAPLNKY 364 (391)
T ss_pred CCEEEECCCCHHHHHHHHHcCC-CCEEEECHHHHhCc-----cHHHHHh--cCCCCCCC
Confidence 4699999999999999988876 78999999998843 5565543 46665543
No 200
>cd01472 vWA_collagen von Willebrand factor (vWF) type A domain; equivalent to the I-domain of integrins. This domain has a variety of functions including: intermolecular adhesion, cell migration, signalling, transcription, and DNA repair. In integrins these domains form heterodimers while in vWF it forms homodimers and multimers. There are different interaction surfaces of this domain as seen by its complexes with collagen with either integrin or human vWFA. In integrins collagen binding occurs via the metal ion-dependent adhesion site (MIDAS) and involves three surface loops located on the upper surface of the molecule. In human vWFA, collagen binding is thought to occur on the bottom of the molecule and does not involve the vestigial MIDAS motif.
Probab=34.10 E-value=85 Score=24.96 Aligned_cols=37 Identities=19% Similarity=0.294 Sum_probs=25.0
Q ss_pred CCCCCeEEEEeCCCCHHHH----HHHHhcCCcccEEeeCCc
Q 026913 53 PDFEKMSITASNDLNEETL----DALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 53 ~g~~~v~I~~S~~Lde~~i----~~l~~~g~~id~fGvGT~ 89 (231)
++..++-|++|+|-+.... ..+.+.|..+-++|+|+.
T Consensus 101 ~~~~~~iiliTDG~~~~~~~~~~~~l~~~gv~i~~ig~g~~ 141 (164)
T cd01472 101 EGVPKVLVVITDGKSQDDVEEPAVELKQAGIEVFAVGVKNA 141 (164)
T ss_pred CCCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEECCcC
Confidence 3567788999999865433 345567776667777763
No 201
>cd01452 VWA_26S_proteasome_subunit 26S proteasome plays a major role in eukaryotic protein breakdown, especially for ubiquitin-tagged proteins. It is an ATP-dependent protease responsible for the bulk of non-lysosomal proteolysis in eukaryotes, often using covalent modification of proteins by ubiquitylation. It consists of a 20S proteolytic core particle (CP) and a 19S regulatory particle (RP). The CP is an ATP independent peptidase consisting of hydrolyzing activities. One or both ends of CP carry the RP that confers both ubiquitin and ATP dependence to the 26S proteosome. The RP's proposed functions include recognition of substrates and translocation of these to CP for proteolysis. The RP can dissociate into a stable lid and base subcomplexes. The base is composed of three non-ATPase subunits (Rpn 1, 2 and 10). A single residue in the vWA domain of Rpn10 has been implicated to be responsible for stabilizing the lid-base association.
Probab=34.09 E-value=1.7e+02 Score=24.95 Aligned_cols=34 Identities=18% Similarity=0.220 Sum_probs=23.1
Q ss_pred CeEEEEeCC--CCHH----HHHHHHhcCCcccEEeeCCcc
Q 026913 57 KMSITASND--LNEE----TLDALNKQGHEVDAFGIGTYL 90 (231)
Q Consensus 57 ~v~I~~S~~--Lde~----~i~~l~~~g~~id~fGvGT~l 90 (231)
.+-||++++ -|+. .+++|.+.|..++..|+|+.-
T Consensus 109 rivi~v~S~~~~d~~~i~~~~~~lkk~~I~v~vI~~G~~~ 148 (187)
T cd01452 109 RIVAFVGSPIEEDEKDLVKLAKRLKKNNVSVDIINFGEID 148 (187)
T ss_pred eEEEEEecCCcCCHHHHHHHHHHHHHcCCeEEEEEeCCCC
Confidence 444444444 4543 446777789999999999984
No 202
>TIGR03108 eps_aminotran_1 exosortase 1 system-associated amidotransferase 1. The predicted protein-sorting transpeptidase that we call exosortase (see TIGR02602) has distinct subclasses that associated with different types of exopolysaccharide production loci. This model represents a distinct clade among a set of amidotransferases largely annotated (not necessarily accurately) as glutatime-hydrolyzing asparagine synthases. Members of this clade are essentially restricted to the characteristic exopolysaccharide (EPS) regions that contain the exosortase 1 genome (xrtA), in genomes that also have numbers of PEP-CTERM domain (TIGR02595) proteins.
Probab=34.09 E-value=1.2e+02 Score=30.23 Aligned_cols=57 Identities=14% Similarity=0.046 Sum_probs=41.4
Q ss_pred ChHHHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHHhc--CCcccEEeeCCc
Q 026913 31 DLAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQ--GHEVDAFGIGTY 89 (231)
Q Consensus 31 Dl~~ls~~~r~~ld~~-~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~--g~~id~fGvGT~ 89 (231)
+..+...++++.|.++ ..++..+ ..+-++.|||||=-.|..+..+ +.++.+|-+|..
T Consensus 235 ~~~e~~e~l~~~l~~aV~~rl~~d--~~vg~~LSGGlDSs~Iaa~~~~~~~~~i~t~s~~~~ 294 (628)
T TIGR03108 235 SEADALAELIERLREAVRSRMVAD--VPLGAFLSGGVDSSAVVALMAGLSDTPVNTCSIAFD 294 (628)
T ss_pred CHHHHHHHHHHHHHHHHHHHHhcC--CcceEeecCCccHHHHHHHHHHhcCCCCcEEEEecC
Confidence 4456667788889888 5555432 3578899999999999887642 346888888753
No 203
>smart00500 SFM Splicing Factor Motif, present in Prp18 and Pr04.
Probab=33.72 E-value=29 Score=23.05 Aligned_cols=21 Identities=24% Similarity=0.496 Sum_probs=17.5
Q ss_pred CHHHHHHHHhcCCcccEEeeC
Q 026913 67 NEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 67 de~~i~~l~~~g~~id~fGvG 87 (231)
|++.+..|.+.|-||..||=+
T Consensus 3 d~eV~~~LR~lgePi~lFGE~ 23 (44)
T smart00500 3 DSEVIRRLRELGEPITLFGED 23 (44)
T ss_pred HHHHHHHHHHcCCCeeecCCC
Confidence 677888899899999999844
No 204
>PRK13398 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=33.58 E-value=2.5e+02 Score=25.23 Aligned_cols=74 Identities=16% Similarity=0.269 Sum_probs=51.5
Q ss_pred hHHHHHHHHHHHhcCCCccEEeeC---------C--CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHH
Q 026913 5 VPNFCAVALALNDLGYKAVGIRLD---------S--GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDA 73 (231)
Q Consensus 5 v~naI~va~~l~~~g~~~~gVRlD---------S--GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~ 73 (231)
...++++|+.|++.|.. .+|.- | |-....-+ +|.++..++|++ ++|.=+|+..+..
T Consensus 40 ~~~~~~~A~~lk~~g~~--~~r~~~~kpRTs~~s~~G~g~~gl~----~l~~~~~~~Gl~-------~~te~~d~~~~~~ 106 (266)
T PRK13398 40 EEQMVKVAEKLKELGVH--MLRGGAFKPRTSPYSFQGLGEEGLK----ILKEVGDKYNLP-------VVTEVMDTRDVEE 106 (266)
T ss_pred HHHHHHHHHHHHHcCCC--EEEEeeecCCCCCCccCCcHHHHHH----HHHHHHHHcCCC-------EEEeeCChhhHHH
Confidence 35677899999998876 56655 2 33333333 344444445443 5678899999999
Q ss_pred HHhcCCcccEEeeCCcccccC
Q 026913 74 LNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 74 l~~~g~~id~fGvGT~l~~~~ 94 (231)
+.+. +|.+-||+..+++.
T Consensus 107 l~~~---vd~~kIga~~~~n~ 124 (266)
T PRK13398 107 VADY---ADMLQIGSRNMQNF 124 (266)
T ss_pred HHHh---CCEEEECcccccCH
Confidence 9865 78999999999864
No 205
>cd01480 vWA_collagen_alpha_1-VI-type VWA_collagen alpha(VI) type: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=33.27 E-value=1.9e+02 Score=23.79 Aligned_cols=36 Identities=11% Similarity=0.260 Sum_probs=26.4
Q ss_pred CCCCCeEEEEeCCCC--------HHHHHHHHhcCCcccEEeeCC
Q 026913 53 PDFEKMSITASNDLN--------EETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 53 ~g~~~v~I~~S~~Ld--------e~~i~~l~~~g~~id~fGvGT 88 (231)
++.+++-|++|+|-+ ++.+..+++.|..+-+.|||.
T Consensus 107 ~~~~~~iillTDG~~~~~~~~~~~~~~~~~~~~gi~i~~vgig~ 150 (186)
T cd01480 107 QKENKFLLVITDGHSDGSPDGGIEKAVNEADHLGIKIFFVAVGS 150 (186)
T ss_pred CCCceEEEEEeCCCcCCCcchhHHHHHHHHHHCCCEEEEEecCc
Confidence 456788999999964 234566777888777788876
No 206
>COG4302 EutC Ethanolamine ammonia-lyase, small subunit [Amino acid transport and metabolism]
Probab=33.20 E-value=34 Score=31.08 Aligned_cols=63 Identities=17% Similarity=0.178 Sum_probs=40.6
Q ss_pred ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHH-------hcCCcccEEeeCCccc
Q 026913 22 AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALN-------KQGHEVDAFGIGTYLV 91 (231)
Q Consensus 22 ~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~-------~~g~~id~fGvGT~l~ 91 (231)
.+=-|+|=|- .|+.+..+.|.+... +.+++.||+++||.--.|..=. .+|...-+|-|||-+.
T Consensus 132 ~YltRPDLGR--rldeesv~~lk~~~~-----~npdvqivVaDGLSa~AI~an~~~il~~l~eglk~~G~svgt~~f 201 (294)
T COG4302 132 LYLTRPDLGR--RLDEESVEALKAHCV-----ANPDVQIVVADGLSALAITANYEPILPPLMEGLKAAGLSVGTPFF 201 (294)
T ss_pred heecCccccc--ccCHHHHHHHHHhhc-----cCCCeEEEecCcccHHHHHhhHHHHHHHHHHHHHhcCcccCChhh
Confidence 4456888885 455566666766533 5679999999999987765422 1344444555666543
No 207
>CHL00200 trpA tryptophan synthase alpha subunit; Provisional
Probab=32.91 E-value=72 Score=28.69 Aligned_cols=36 Identities=14% Similarity=0.227 Sum_probs=30.9
Q ss_pred CCeEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCccccc
Q 026913 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 56 ~~v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
.+..|++..|++ .+.++++.+.| .|++=||+.++..
T Consensus 201 t~~Pi~vGFGI~~~e~~~~~~~~G--ADGvVVGSalv~~ 237 (263)
T CHL00200 201 TNKPIILGFGISTSEQIKQIKGWN--INGIVIGSACVQI 237 (263)
T ss_pred cCCCEEEECCcCCHHHHHHHHhcC--CCEEEECHHHHHH
Confidence 566899999999 99999999888 5788899999763
No 208
>PRK11750 gltB glutamate synthase subunit alpha; Provisional
Probab=32.76 E-value=59 Score=36.31 Aligned_cols=60 Identities=22% Similarity=0.351 Sum_probs=40.9
Q ss_pred CChHHH-HHHHHHHHHHHhHhhCCCCCCC-eEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCcccccCCCCccceEE
Q 026913 30 GDLAYL-SCEARKFFRTIEKEFGVPDFEK-MSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVF 103 (231)
Q Consensus 30 GDl~~l-s~~~r~~ld~~~~~l~~~g~~~-v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~vy 103 (231)
|-|.++ ..++.+.|.+. |+.+ |++++||+|- ...+.....-| .|.||+||...- +++|++
T Consensus 1045 GlP~e~gL~~~~~~L~~~-------glR~rv~l~a~Ggl~t~~Dv~kA~aLG--Ad~~~~gt~~li-----alGCi~ 1107 (1485)
T PRK11750 1045 GSPWELGLAETHQALVAN-------GLRHKIRLQVDGGLKTGLDVIKAAILG--AESFGFGTGPMV-----ALGCKY 1107 (1485)
T ss_pred CccHHHHHHHHHHHHHhc-------CCCcceEEEEcCCcCCHHHHHHHHHcC--CcccccchHHHH-----HcCCHH
Confidence 444444 33577888886 7755 9999999983 34444444567 579999998877 466654
No 209
>PF01081 Aldolase: KDPG and KHG aldolase; InterPro: IPR000887 4-Hydroxy-2-oxoglutarate aldolase (4.1.3.16 from EC) (KHG-aldolase) catalyzes the interconversion of 4-hydroxy-2-oxoglutarate into pyruvate and glyoxylate. Phospho-2-dehydro-3-deoxygluconate aldolase (4.1.2.14 from EC) (KDPG-aldolase) catalyzes the interconversion of 6-phospho-2-dehydro-3-deoxy-D-gluconate into pyruvate and glyceraldehyde 3-phosphate. These two enzymes are structurally and functionally related []. They are both homotrimeric proteins of approximately 220 amino-acid residues. They are class I aldolases whose catalytic mechanism involves the formation of a Schiff-base intermediate between the substrate and the epsilon-amino group of a lysine residue. In both enzymes, an arginine is required for catalytic activity.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 3VCR_A 1FQ0_A 1EUN_A 1EUA_B 1FWR_A 2C0A_B 1WBH_A 1WAU_A 2YW3_B 2YW4_A ....
Probab=32.72 E-value=2.5e+02 Score=24.18 Aligned_cols=63 Identities=24% Similarity=0.216 Sum_probs=38.3
Q ss_pred hHHHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC
Q 026913 5 VPNFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (231)
Q Consensus 5 v~naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~ 79 (231)
...|+.++++|.+.|.+..=|-+.|.+-....+++++.+ +++.|=+..=+|.+.++...+.|+
T Consensus 19 ~~~a~~~~~al~~gGi~~iEiT~~t~~a~~~I~~l~~~~------------p~~~vGAGTV~~~e~a~~a~~aGA 81 (196)
T PF01081_consen 19 PEDAVPIAEALIEGGIRAIEITLRTPNALEAIEALRKEF------------PDLLVGAGTVLTAEQAEAAIAAGA 81 (196)
T ss_dssp GGGHHHHHHHHHHTT--EEEEETTSTTHHHHHHHHHHHH------------TTSEEEEES--SHHHHHHHHHHT-
T ss_pred HHHHHHHHHHHHHCCCCEEEEecCCccHHHHHHHHHHHC------------CCCeeEEEeccCHHHHHHHHHcCC
Confidence 346788899999999998889999887444433333322 455566666666666666666654
No 210
>cd05290 LDH_3 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of some bacterial LDHs from firmicutes, gammaproteobacteria, and actinobacteria. Vertebrate LDHs are non-allosteric, but some bacterial LDHs are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenase, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=32.72 E-value=66 Score=29.43 Aligned_cols=56 Identities=23% Similarity=0.160 Sum_probs=35.2
Q ss_pred HHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC-cccEEeeCCcccc
Q 026913 37 CEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH-EVDAFGIGTYLVT 92 (231)
Q Consensus 37 ~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~-~id~fGvGT~l~~ 92 (231)
..-.+++.+.+.++.-.+++-+-|++||=.|.-+-.-....|. +.-.||.||.|=+
T Consensus 93 ~~N~~I~~~i~~~i~~~~p~~i~ivvsNPvDv~t~~~~k~sg~p~~rviG~gt~LDs 149 (307)
T cd05290 93 QTNAKIIREIMGNITKVTKEAVIILITNPLDIAVYIAATEFDYPANKVIGTGTMLDT 149 (307)
T ss_pred HHHHHHHHHHHHHHHHhCCCeEEEEecCcHHHHHHHHHHHhCcChhheecccchHHH
Confidence 3334455555554544466777888888877665555544465 4567888888855
No 211
>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=32.66 E-value=2.1e+02 Score=23.77 Aligned_cols=65 Identities=22% Similarity=0.264 Sum_probs=37.6
Q ss_pred HHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeC
Q 026913 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 12 a~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvG 87 (231)
..++++.|+.+.-+..|+.+ .....++.++.. +. +.-|+.+.+.+...+..+.+.|.|+..|+..
T Consensus 22 ~~~~~~~g~~~~~~~~~~~~--~~~~~i~~~~~~--------~v-dgiii~~~~~~~~~~~~~~~~~ipvV~~~~~ 86 (266)
T cd06278 22 SRALQARGYQPLLINTDDDE--DLDAALRQLLQY--------RV-DGVIVTSGTLSSELAEECRRNGIPVVLINRY 86 (266)
T ss_pred HHHHHHCCCeEEEEcCCCCH--HHHHHHHHHHHc--------CC-CEEEEecCCCCHHHHHHHhhcCCCEEEECCc
Confidence 44566778887555555432 222223333322 33 4355566566666677888889888887654
No 212
>TIGR01769 GGGP geranylgeranylglyceryl phosphate synthase. This model represents geranylgeranylglyceryl phosphate synthase which catalyzes the first committed step in the synthesis of ether-linked membrane lipids in archaea. The active enzyme is reported to be a homopentamer in Methanobacterium thermoautotrophicum but is reported to be a homodimer in Thermoplasma acidophilum.
Probab=32.34 E-value=1.7e+02 Score=25.37 Aligned_cols=66 Identities=21% Similarity=0.209 Sum_probs=37.7
Q ss_pred HHHHHHHhcCCCccEEeeC-CCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCCcccEEeeC
Q 026913 10 AVALALNDLGYKAVGIRLD-SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 10 ~va~~l~~~g~~~~gVRlD-SGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L-de~~i~~l~~~g~~id~fGvG 87 (231)
..+.+.+..|.++.-+ -| ||-....+....+...+. .++.+++.+|+ +.+.++++.+.|+ |..=||
T Consensus 138 ~~a~aa~~~G~~~i~L-e~~sGa~~~v~~e~i~~Vk~~---------~~~Pv~vGGGIrs~e~a~~l~~~GA--D~VVVG 205 (205)
T TIGR01769 138 AYCLAAKYFGMKWVYL-EAGSGASYPVNPETISLVKKA---------SGIPLIVGGGIRSPEIAYEIVLAGA--DAIVTG 205 (205)
T ss_pred HHHHHHHHcCCCEEEE-EcCCCCCCCCCHHHHHHHHHh---------hCCCEEEeCCCCCHHHHHHHHHcCC--CEEEeC
Confidence 4455555567665444 23 444322233333333332 24589999999 8899999988885 444333
No 213
>cd01458 vWA_ku Ku70/Ku80 N-terminal domain. The Ku78 heterodimer (composed of Ku70 and Ku80) contributes to genomic integrity through its ability to bind DNA double-strand breaks (DSB) in a preferred orientation. DSB's are repaired by either homologues recombination or non-homologues end joining and facilitate repair by the non-homologous end-joining pathway (NHEJ). The Ku heterodimer is required for accurate process that tends to preserve the sequence at the junction. Ku78 is found in all three kingdoms of life. However, only the eukaryotic proteins have a vWA domain fused to them at their N-termini. The vWA domain is not involved in DNA binding but may very likey mediate Ku78's interactions with other proteins. Members of this subgroup lack the conserved MIDAS motif.
Probab=32.30 E-value=1.5e+02 Score=25.06 Aligned_cols=57 Identities=16% Similarity=0.151 Sum_probs=35.7
Q ss_pred CCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCH------------HHHHHHHhcCCcccEEeeCCc
Q 026913 29 SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE------------ETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 29 SGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde------------~~i~~l~~~g~~id~fGvGT~ 89 (231)
++++...-..+.++|..... +-....-|+++|+-|. ..+.+|.+.|..+..||||+.
T Consensus 105 ~~~l~~aL~~a~~~~~~~~~----~~~~k~IvL~TDg~~p~~~~~~~~~~~~~~a~~l~~~gI~i~~i~i~~~ 173 (218)
T cd01458 105 QVSLSDALWVCLDLFSKGKK----KKSHKRIFLFTNNDDPHGGDSIKDSQAAVKAEDLKDKGIELELFPLSSP 173 (218)
T ss_pred CccHHHHHHHHHHHHHhccc----cccccEEEEECCCCCCCCCCHHHHHHHHHHHHHHHhCCcEEEEEecCCC
Confidence 45666666666666665211 1134567888998775 234455566888889998865
No 214
>PRK00876 nadE NAD synthetase; Reviewed
Probab=32.27 E-value=1.1e+02 Score=28.41 Aligned_cols=57 Identities=14% Similarity=0.055 Sum_probs=40.6
Q ss_pred CChHHHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHHhc-CCcccEEeeCCc
Q 026913 30 GDLAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQ-GHEVDAFGIGTY 89 (231)
Q Consensus 30 GDl~~ls~~~r~~ld~~-~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~-g~~id~fGvGT~ 89 (231)
.|+.+...++++.|.+. ..+++. ..|-+..|||+|=-.+..|..+ ......|+|+-.
T Consensus 10 ~~~~~~~e~i~~~l~~~V~~~~~~---~~VvVgLSGGIDSSvvaaLa~~a~g~~~v~av~~~ 68 (326)
T PRK00876 10 IDAAAEAERIRAAIREQVRGTLRR---RGVVLGLSGGIDSSVTAALCVRALGKERVYGLLMP 68 (326)
T ss_pred CCHHHHHHHHHHHHHHHHHHHcCC---CCEEEEccCCHHHHHHHHHHHHhhCCCcEEEEEec
Confidence 57777788888888877 333543 4789999999999999988753 122456776654
No 215
>PF04123 DUF373: Domain of unknown function (DUF373); InterPro: IPR007254 This archaeal family of unknown function is predicted to be an integral membrane protein with six transmembrane regions.
Probab=31.95 E-value=1.7e+02 Score=27.53 Aligned_cols=72 Identities=13% Similarity=0.103 Sum_probs=46.6
Q ss_pred hHHHHHHHHHHHhcCCCccEEeeCCCChH---HHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcc
Q 026913 5 VPNFCAVALALNDLGYKAVGIRLDSGDLA---YLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEV 81 (231)
Q Consensus 5 v~naI~va~~l~~~g~~~~gVRlDSGDl~---~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~i 81 (231)
+--|+++.++|++.|... -|=.=||+.. .--+++.++||+.-++++.+ --|++|||-+-|.+--+.+.-.|+
T Consensus 50 if~avkiydeL~~~Gedv-eVA~VsG~~~~~v~ad~~I~~qld~vl~~~~~~----~~i~VsDGaeDE~vlPiIqSr~~V 124 (344)
T PF04123_consen 50 IFGAVKIYDELKAEGEDV-EVAVVSGSPDVGVEADRKIAEQLDEVLSKFDPD----SAIVVSDGAEDERVLPIIQSRVPV 124 (344)
T ss_pred HHHHHHHHHHHHhcCCCe-EEEEEECCCCCchhhHHHHHHHHHHHHHhCCCC----EEEEEecChhhhhhhHhhhccCce
Confidence 345778899999988765 3333345432 22345777788875555543 378999988877777776554444
No 216
>TIGR00735 hisF imidazoleglycerol phosphate synthase, cyclase subunit.
Probab=31.82 E-value=2.2e+02 Score=24.90 Aligned_cols=77 Identities=16% Similarity=0.129 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCCc-cEEeeCCCC-hHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCCcccE
Q 026913 7 NFCAVALALNDLGYKA-VGIRLDSGD-LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDA 83 (231)
Q Consensus 7 naI~va~~l~~~g~~~-~gVRlDSGD-l~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld-e~~i~~l~~~g~~id~ 83 (231)
+.+++++.+.+.|.+. .-+=+|... ....-..+.+.+.+. .++.|+++||+- .+.+.++...| ++.
T Consensus 31 dp~~~a~~~~~~G~~~l~v~Dl~~~~~~~~~n~~~i~~i~~~---------~~~pv~~~GGi~s~~d~~~~~~~G--a~~ 99 (254)
T TIGR00735 31 DPVELAQRYDEEGADELVFLDITASSEGRTTMIDVVERTAET---------VFIPLTVGGGIKSIEDVDKLLRAG--ADK 99 (254)
T ss_pred CHHHHHHHHHHcCCCEEEEEcCCcccccChhhHHHHHHHHHh---------cCCCEEEECCCCCHHHHHHHHHcC--CCE
Confidence 5677888887777542 233333221 111111122222221 246899999997 99999999888 567
Q ss_pred EeeCCcccccC
Q 026913 84 FGIGTYLVTCY 94 (231)
Q Consensus 84 fGvGT~l~~~~ 94 (231)
.-|||.+..+.
T Consensus 100 vivgt~~~~~p 110 (254)
T TIGR00735 100 VSINTAAVKNP 110 (254)
T ss_pred EEEChhHhhCh
Confidence 78999988753
No 217
>cd04742 NPD_FabD 2-Nitropropane dioxygenase (NPD)-like domain, associated with the (acyl-carrier-protein) S-malonyltransferase FabD. NPD is part of the nitroalkaneoxidizing enzyme family, that catalyzes oxidative denitrification of nitroalkanes to their corresponding carbonyl compounds and nitrites. NDPs are members of the NAD(P)H-dependent flavin oxidoreductase family that reduce a range of alternative electron acceptors. Most use FAD/FMN as a cofactor and NAD(P)H as electron donor. Some contain 4Fe-4S cluster to transfer electron from FAD to FMN.
Probab=31.51 E-value=2.1e+02 Score=27.64 Aligned_cols=72 Identities=15% Similarity=0.220 Sum_probs=48.4
Q ss_pred CccEEeeCCC------ChHHHHHHHHHHHHHHhHhhCCCCCC-CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 21 KAVGIRLDSG------DLAYLSCEARKFFRTIEKEFGVPDFE-KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 21 ~~~gVRlDSG------Dl~~ls~~~r~~ld~~~~~l~~~g~~-~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
...-+--||| .+..|.-.++++.|+...+. |+. ++.|++.||| |...+......|+ ++-=+||.+..
T Consensus 179 D~Ivvq~EAGGH~g~~~~~~Llp~v~~l~d~v~~~~---~~~~~ipViAAGGI~tg~~vaAA~alGA--d~V~~GT~fla 253 (418)
T cd04742 179 DDITVEADSGGHTDNRPLSVLLPTIIRLRDELAARY---GYRRPIRVGAAGGIGTPEAAAAAFALGA--DFIVTGSINQC 253 (418)
T ss_pred CEEEEcccCCCCCCCccHHhHHHHHHHHHHHHhhcc---ccCCCceEEEECCCCCHHHHHHHHHcCC--cEEeeccHHHh
Confidence 4444446663 24445555555555543323 333 6899999999 9999999999995 56679999988
Q ss_pred cCCCC
Q 026913 93 CYAQA 97 (231)
Q Consensus 93 ~~~~p 97 (231)
|..++
T Consensus 254 t~Ea~ 258 (418)
T cd04742 254 TVEAG 258 (418)
T ss_pred Ccccc
Confidence 76543
No 218
>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang
Probab=31.50 E-value=2.5e+02 Score=23.65 Aligned_cols=63 Identities=16% Similarity=0.110 Sum_probs=36.5
Q ss_pred HHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEee
Q 026913 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 12 a~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGv 86 (231)
..++++.|+.+.-+..+.. . ..++.+.+.. .-.+.-|+.+...+...+.++.+.|.|+..||-
T Consensus 33 ~~~~~~~g~~~~v~~~~~~---~-~~~~~~~l~~--------~~~dgiii~~~~~~~~~~~~~~~~~ipvV~~~~ 95 (275)
T cd06295 33 ADALAERGYDLLLSFVSSP---D-RDWLARYLAS--------GRADGVILIGQHDQDPLPERLAETGLPFVVWGR 95 (275)
T ss_pred HHHHHHcCCEEEEEeCCch---h-HHHHHHHHHh--------CCCCEEEEeCCCCChHHHHHHHhCCCCEEEECC
Confidence 4556677888755444332 1 2334444433 223545566655677778888888888776653
No 219
>PRK01033 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=31.38 E-value=1.2e+02 Score=26.80 Aligned_cols=72 Identities=11% Similarity=0.022 Sum_probs=45.9
Q ss_pred HHHHHHHHHHhcCCC-ccEEee-----CCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCC
Q 026913 7 NFCAVALALNDLGYK-AVGIRL-----DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGH 79 (231)
Q Consensus 7 naI~va~~l~~~g~~-~~gVRl-----DSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L-de~~i~~l~~~g~ 79 (231)
+.+++++.+.+.|.+ +.-+=+ .+|....+.+++.+ + ..+.|+++||+ +.+.+.++...|+
T Consensus 31 dp~~~a~~~~~~g~~~l~i~Dl~~~~~~~~~n~~~i~~i~~---~----------~~~pv~~gGGi~s~~d~~~l~~~G~ 97 (258)
T PRK01033 31 DPINAVRIFNEKEVDELIVLDIDASKRGSEPNYELIENLAS---E----------CFMPLCYGGGIKTLEQAKKIFSLGV 97 (258)
T ss_pred CHHHHHHHHHHcCCCEEEEEECCCCcCCCcccHHHHHHHHH---h----------CCCCEEECCCCCCHHHHHHHHHCCC
Confidence 677888888887754 333333 34444333333222 2 24578999999 8888999887774
Q ss_pred cccEEeeCCccccc
Q 026913 80 EVDAFGIGTYLVTC 93 (231)
Q Consensus 80 ~id~fGvGT~l~~~ 93 (231)
+..=|||.+..+
T Consensus 98 --~~vvigs~~~~~ 109 (258)
T PRK01033 98 --EKVSINTAALED 109 (258)
T ss_pred --CEEEEChHHhcC
Confidence 455678877663
No 220
>cd00885 cinA Competence-damaged protein. CinA is the first gene in the competence- inducible (cin) operon and is thought to be specifically required at some stage in the process of transformation. This domain is closely related to a domain, found in a variety of proteins involved in biosynthesis of molybdopterin cofactor, where the domain is presumed to bind molybdopterin.
Probab=31.12 E-value=1.7e+02 Score=24.37 Aligned_cols=27 Identities=19% Similarity=0.265 Sum_probs=12.1
Q ss_pred HHHHHHHhcCCCccEEeeCCCChHHHH
Q 026913 10 AVALALNDLGYKAVGIRLDSGDLAYLS 36 (231)
Q Consensus 10 ~va~~l~~~g~~~~gVRlDSGDl~~ls 36 (231)
.++..|++.|..+..+++=.=|...+.
T Consensus 23 ~l~~~L~~~G~~v~~~~~v~Dd~~~I~ 49 (170)
T cd00885 23 FLAKELAELGIEVYRVTVVGDDEDRIA 49 (170)
T ss_pred HHHHHHHHCCCEEEEEEEeCCCHHHHH
Confidence 344445555555544444333333333
No 221
>PRK02655 psbI photosystem II reaction center I protein I; Provisional
Probab=31.06 E-value=28 Score=22.42 Aligned_cols=14 Identities=36% Similarity=0.472 Sum_probs=10.6
Q ss_pred cCCCCCCCCCCcccee
Q 026913 116 LSEDVSKVSIPCKKRS 131 (231)
Q Consensus 116 ~S~~~~K~t~PG~K~v 131 (231)
+|+|++. +||+|+.
T Consensus 24 lsnDP~R--nP~rkd~ 37 (38)
T PRK02655 24 LSSDPTR--NPGRKDL 37 (38)
T ss_pred CCCCCCC--CCCcccC
Confidence 5788876 8899863
No 222
>PF03060 NMO: Nitronate monooxygenase; InterPro: IPR004136 2-Nitropropane dioxygenase (1.13.11.32 from EC) catalyses the oxidation of nitroalkanes into their corresponding carbonyl compounds and nitrite using eithr FAD or FMN as a cofactor []. This entry also includes fatty acid synthase subunit beta (2.3.1.86 from EC), which catalyses the formation of long- chain fatty acids from acetyl-CoA, malonyl-CoA and NADPH. The beta subunit contains domains for: [acyl-carrier protein] acetyltransferase and malonyltransferase, S-acyl fatty acid synthase thioesterase, enoyl-[acyl-carrier protein] reductase, and 3-hydroxypalmitoyl-[acyl-carrier protein] dehydratase. ; GO: 0018580 nitronate monooxygenase activity, 0055114 oxidation-reduction process; PDB: 2Z6I_B 2Z6J_B 3BW2_A 3BW3_A 3BW4_A 2GJL_A 2GJN_A 3BO9_A.
Probab=30.95 E-value=1.1e+02 Score=28.09 Aligned_cols=65 Identities=22% Similarity=0.267 Sum_probs=40.9
Q ss_pred CCCccEEee-CCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccccCCC
Q 026913 19 GYKAVGIRL-DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQ 96 (231)
Q Consensus 19 g~~~~gVRl-DSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~~~~ 96 (231)
|..--|=|- +.+++..|..++++.++ +.|++.||| |-..+...+..| .++.=+||.++.+...
T Consensus 164 G~eAGGH~g~~~~~~~~L~~~v~~~~~-------------iPViaAGGI~dg~~iaaal~lG--A~gV~~GTrFl~t~Es 228 (330)
T PF03060_consen 164 GPEAGGHRGFEVGSTFSLLPQVRDAVD-------------IPVIAAGGIADGRGIAAALALG--ADGVQMGTRFLATEES 228 (330)
T ss_dssp -TTSSEE---SSG-HHHHHHHHHHH-S-------------S-EEEESS--SHHHHHHHHHCT---SEEEESHHHHTSTTS
T ss_pred ccccCCCCCccccceeeHHHHHhhhcC-------------CcEEEecCcCCHHHHHHHHHcC--CCEeecCCeEEecccc
Confidence 333345555 44556666666555442 689999999 888899999999 5788899999987765
Q ss_pred Cc
Q 026913 97 AA 98 (231)
Q Consensus 97 p~ 98 (231)
+.
T Consensus 229 ~~ 230 (330)
T PF03060_consen 229 GA 230 (330)
T ss_dssp -S
T ss_pred cC
Confidence 43
No 223
>cd02809 alpha_hydroxyacid_oxid_FMN Family of homologous FMN-dependent alpha-hydroxyacid oxidizing enzymes. This family occurs in both prokaryotes and eukaryotes. Members of this family include flavocytochrome b2 (FCB2), glycolate oxidase (GOX), lactate monooxygenase (LMO), mandelate dehydrogenase (MDH), and long chain hydroxyacid oxidase (LCHAO). In green plants, glycolate oxidase is one of the key enzymes in photorespiration where it oxidizes glycolate to glyoxylate. LMO catalyzes the oxidation of L-lactate to acetate and carbon dioxide. MDH oxidizes (S)-mandelate to phenylglyoxalate. It is an enzyme in the mandelate pathway that occurs in several strains of Pseudomonas which converts (R)-mandelate to benzoate.
Probab=30.80 E-value=2.3e+02 Score=25.49 Aligned_cols=34 Identities=15% Similarity=0.189 Sum_probs=28.1
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
++.||+|||+ +...+.+....| .|+.+|||.+..
T Consensus 227 ~ipvia~GGI~~~~d~~kal~lG--Ad~V~ig~~~l~ 261 (299)
T cd02809 227 RIEVLLDGGIRRGTDVLKALALG--ADAVLIGRPFLY 261 (299)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC--CCEEEEcHHHHH
Confidence 5789999999 677777777788 689999997765
No 224
>PRK15492 triosephosphate isomerase; Provisional
Probab=30.73 E-value=1.6e+02 Score=26.60 Aligned_cols=46 Identities=20% Similarity=0.309 Sum_probs=34.1
Q ss_pred HHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCc
Q 026913 39 ARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 39 ~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~ 89 (231)
+|+.|.+. ++-. .++++|+..|+++++-+.+|..+. .+|+|=||..
T Consensus 198 Ir~~l~~~---~~~~-~~~irILYGGSV~~~N~~~l~~~~-diDG~LvG~a 243 (260)
T PRK15492 198 IKQCLIEL---FGDA-GDDIPVFYGGSVNAENANELFGQP-HIDGLFIGRS 243 (260)
T ss_pred HHHHHHHH---hccc-cCceeEEEcCccCHHHHHHHhcCC-CCCEEEeehh
Confidence 55554443 3322 467999999999999999998663 5899988864
No 225
>PTZ00333 triosephosphate isomerase; Provisional
Probab=30.72 E-value=1.8e+02 Score=26.11 Aligned_cols=36 Identities=28% Similarity=0.377 Sum_probs=30.1
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
++++|+..|+++++-+.+|... ..+|++.||+.-..
T Consensus 206 ~~~~ILYGGSV~~~N~~~l~~~-~~vDG~LvG~asl~ 241 (255)
T PTZ00333 206 EATRIIYGGSVNEKNCKELIKQ-PDIDGFLVGGASLK 241 (255)
T ss_pred ccceEEEcCCCCHHHHHHHhcC-CCCCEEEEehHhhh
Confidence 4689999999999999999765 23899999986654
No 226
>PF03437 BtpA: BtpA family; InterPro: IPR005137 Photosystem I (PSI) is a large protein complex embedded within the photosynthetic thylakoid membrane. It consists of 11 subunits, ~100 chlorophyll a molecules, 2 phylloquinones, and 3 Fe4S4-clusters. The three dimensional structure of the PSI complex has been resolved at 2.5 A [], which allows the precise localisation of each cofactor. PSI together with photosystem II (PSII) catalyses the light-induced steps in oxygenic photosynthesis - a process found in cyanobacteria, eukaryotic algae (e.g. red algae, green algae) and higher plants. To date, three thylakoid proteins involved in the stable accumulation of PSI have been identified: BtpA [], Ycf3 [, ], and Ycf4 (IPR003359 from INTERPRO) []. Because translation of the psaA and psaB mRNAs encoding the two reaction centre polypeptides, of PSI and PSII respectively, is not affected in mutant strains lacking functional ycf3 and ycf4, the products of these two genes appear to act at a post-translational step of PSI biosynthesis. These gene products are therefore involved either in the stabilisation or in the assembly of the PSI complex. However, their exact roles remain unknown. The BtpA protein appears to act at the level of PSI stabilisation []. It is an extrinsic membrane protein located on the cytoplasmic side of the thylakoid membrane [, ]. Homologs of BtpA are found in the crenarchaeota and euryarchaeota, where their function remains unknown. The Ycf4 protein is firmly associated with the thylakoid membrane, presumably through a transmembrane domain []. Ycf4 co-fractionates with a protein complex larger than PSI upon sucrose density gradient centrifugation of solubilised thylakoids []. The Ycf3 protein is loosely associated with the thylakoid membrane and can be released from the membrane with sodium carbonate. This suggests that Ycf3 is not part of a stable complex and that it probably interacts transiently with its partners []. Ycf3 contains a number of tetratrico peptide repeats (TPR, IPR001440 from INTERPRO); TPR is a structural motif present in a wide range of proteins, which mediates protein-protein interactions.
Probab=30.61 E-value=83 Score=28.34 Aligned_cols=32 Identities=13% Similarity=0.283 Sum_probs=25.6
Q ss_pred eEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 58 MSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 58 v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
+.|++++|.+++.|.++.+. .|++=|||+|=.
T Consensus 201 ~PVlvGSGvt~~Ni~~~l~~---ADG~IVGS~~K~ 232 (254)
T PF03437_consen 201 VPVLVGSGVTPENIAEYLSY---ADGAIVGSYFKK 232 (254)
T ss_pred CCEEEecCCCHHHHHHHHHh---CCEEEEeeeeee
Confidence 67888888888888888765 577778888754
No 227
>PRK05799 coproporphyrinogen III oxidase; Provisional
Probab=30.49 E-value=2.6e+02 Score=25.83 Aligned_cols=76 Identities=24% Similarity=0.329 Sum_probs=45.6
Q ss_pred HHHHHHHhc--CCCccEEeeCCCChHHHHHHHHH-HHHHHhHhhCCCCCCCeEEEE-eCCCCHHHHHHHHhcCCcccEEe
Q 026913 10 AVALALNDL--GYKAVGIRLDSGDLAYLSCEARK-FFRTIEKEFGVPDFEKMSITA-SNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 10 ~va~~l~~~--g~~~~gVRlDSGDl~~ls~~~r~-~ld~~~~~l~~~g~~~v~I~~-S~~Lde~~i~~l~~~g~~id~fG 85 (231)
++.+|++.. +..+.-|-+-.|.+..+.....+ +++.. ..++...--.+.+-+ .+.+|++.++.|.+.|....++|
T Consensus 38 ~l~~Ei~~~~~~~~~~~i~~gGGtps~l~~~~l~~L~~~i-~~~~~~~~~eitie~~p~~~t~e~l~~l~~~G~~rvsiG 116 (374)
T PRK05799 38 ALSKEIRNSTKNKKIKSIFIGGGTPTYLSLEALEILKETI-KKLNKKEDLEFTVEGNPGTFTEEKLKILKSMGVNRLSIG 116 (374)
T ss_pred HHHHHHHhhcCCCceeEEEECCCcccCCCHHHHHHHHHHH-HhCCCCCCCEEEEEeCCCcCCHHHHHHHHHcCCCEEEEE
Confidence 445565532 23456788888888766554333 33333 234433222334333 35799999999999997666667
Q ss_pred e
Q 026913 86 I 86 (231)
Q Consensus 86 v 86 (231)
|
T Consensus 117 v 117 (374)
T PRK05799 117 L 117 (374)
T ss_pred C
Confidence 6
No 228
>PRK13111 trpA tryptophan synthase subunit alpha; Provisional
Probab=30.48 E-value=75 Score=28.45 Aligned_cols=36 Identities=17% Similarity=0.264 Sum_probs=30.5
Q ss_pred CCeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 56 ~~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
.++.|++..|+ +.+.+.++.+. .|+.-|||.++...
T Consensus 199 ~~~pv~vGfGI~~~e~v~~~~~~---ADGviVGSaiv~~~ 235 (258)
T PRK13111 199 TDLPVAVGFGISTPEQAAAIAAV---ADGVIVGSALVKII 235 (258)
T ss_pred CCCcEEEEcccCCHHHHHHHHHh---CCEEEEcHHHHHHH
Confidence 46789999999 88999999853 69999999998754
No 229
>PF13519 VWA_2: von Willebrand factor type A domain; PDB: 3IBS_B 3RAG_B 2X5N_A.
Probab=30.26 E-value=1.1e+02 Score=23.63 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=24.8
Q ss_pred CCCeEEEEeCCCCH----HHHHHHHhcCCcccEEeeCCccc
Q 026913 55 FEKMSITASNDLNE----ETLDALNKQGHEVDAFGIGTYLV 91 (231)
Q Consensus 55 ~~~v~I~~S~~Lde----~~i~~l~~~g~~id~fGvGT~l~ 91 (231)
....-|++|+|-+. +.+..+.++|..+..+|+|+.-.
T Consensus 99 ~~~~iv~iTDG~~~~~~~~~~~~~~~~~i~i~~v~~~~~~~ 139 (172)
T PF13519_consen 99 RRRAIVLITDGEDNSSDIEAAKALKQQGITIYTVGIGSDSD 139 (172)
T ss_dssp EEEEEEEEES-TTHCHHHHHHHHHHCTTEEEEEEEES-TT-
T ss_pred CceEEEEecCCCCCcchhHHHHHHHHcCCeEEEEEECCCcc
Confidence 45578999999875 35666666787788888887654
No 230
>COG2896 MoaA Molybdenum cofactor biosynthesis enzyme [Coenzyme metabolism]
Probab=30.21 E-value=3e+02 Score=25.77 Aligned_cols=64 Identities=16% Similarity=0.182 Sum_probs=44.2
Q ss_pred HHHHHHHhcCCCccEEeeCCCChHHHHHH--------HHHHHHHHhHhhCCCCCCCeEE--EEeCCCCHHHHHHHHhc
Q 026913 10 AVALALNDLGYKAVGIRLDSGDLAYLSCE--------ARKFFRTIEKEFGVPDFEKMSI--TASNDLNEETLDALNKQ 77 (231)
Q Consensus 10 ~va~~l~~~g~~~~gVRlDSGDl~~ls~~--------~r~~ld~~~~~l~~~g~~~v~I--~~S~~Lde~~i~~l~~~ 77 (231)
+-|.+|+++|.+-.=|=+||=|...+.+- +.+=+++| +.. ||+.||| ++--|+|...|..|.+.
T Consensus 102 ~~a~~Lk~AGl~rVNVSLDsld~e~f~~IT~~~~~~~Vl~GI~~A---~~~-Gl~pVKlN~Vv~kgvNd~ei~~l~e~ 175 (322)
T COG2896 102 RRAADLKEAGLDRVNVSLDSLDPEKFRKITGRDRLDRVLEGIDAA---VEA-GLTPVKLNTVLMKGVNDDEIEDLLEF 175 (322)
T ss_pred HHHHHHHHcCCcEEEeecccCCHHHHHHHhCCCcHHHHHHHHHHH---HHc-CCCceEEEEEEecCCCHHHHHHHHHH
Confidence 34778999999988999999887555433 33333333 222 8886665 55566999999999873
No 231
>COG1902 NemA NADH:flavin oxidoreductases, Old Yellow Enzyme family [Energy production and conversion]
Probab=30.15 E-value=1.9e+02 Score=27.33 Aligned_cols=35 Identities=14% Similarity=0.240 Sum_probs=28.2
Q ss_pred eEEEEeC-CCCHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 58 MSITASN-DLNEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 58 v~I~~S~-~Lde~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
+.++++| --|.+...++++.| -+|.-|+|.-++.+
T Consensus 289 ~pvi~~G~i~~~~~Ae~~l~~g-~aDlVa~gR~~lad 324 (363)
T COG1902 289 IPVIAVGGINDPEQAEEILASG-RADLVAMGRPFLAD 324 (363)
T ss_pred CCEEEeCCCCCHHHHHHHHHcC-CCCEEEechhhhcC
Confidence 5667776 46888899999888 68899999988874
No 232
>TIGR01949 AroFGH_arch predicted phospho-2-dehydro-3-deoxyheptonate aldolase. Together these two genes appear to perform the synthesis of 3-dehydroquinate. It is presumed that the substrates and the chemical transformations involved are identical, but this has not yet been proven experimentally.
Probab=29.82 E-value=62 Score=28.51 Aligned_cols=37 Identities=5% Similarity=0.133 Sum_probs=28.8
Q ss_pred CeEEEEeCCCC-------HHHHHHHHhcCCcccEEeeCCcccccCC
Q 026913 57 KMSITASNDLN-------EETLDALNKQGHEVDAFGIGTYLVTCYA 95 (231)
Q Consensus 57 ~v~I~~S~~Ld-------e~~i~~l~~~g~~id~fGvGT~l~~~~~ 95 (231)
.+.|+++||++ .+.+.++.+.|+ +++-+|..+.+..+
T Consensus 192 ~iPVva~GGi~~~~~~~~~~~i~~~~~aGa--~Gia~g~~i~~~~d 235 (258)
T TIGR01949 192 PAPVVVAGGPKTNSDREFLQMIKDAMEAGA--AGVAVGRNIFQHDD 235 (258)
T ss_pred CCcEEEecCCCCCCHHHHHHHHHHHHHcCC--cEEehhhHhhcCCC
Confidence 46789999998 677888888885 48888888887543
No 233
>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems. Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.
Probab=29.55 E-value=2.6e+02 Score=23.53 Aligned_cols=62 Identities=16% Similarity=0.093 Sum_probs=34.9
Q ss_pred HHHHhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC--HHHHHHHHhcCCcccEEe
Q 026913 13 LALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (231)
Q Consensus 13 ~~l~~~g~~~~gVRlDS-GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld--e~~i~~l~~~g~~id~fG 85 (231)
.++++.|+.+.-. ++ +|.......++.++.. +. +.-|+.+.+.+ ...+..+.+.|.|+..++
T Consensus 23 ~~a~~~g~~~~~~--~~~~~~~~~~~~i~~l~~~--------~v-dgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~ 87 (273)
T cd06309 23 DAAEKRGFDLKFA--DAQQKQENQISAIRSFIAQ--------GV-DVIILAPVVETGWDPVLKEAKAAGIPVILVD 87 (273)
T ss_pred HHHHhcCCEEEEe--CCCCCHHHHHHHHHHHHHc--------CC-CEEEEcCCccccchHHHHHHHHCCCCEEEEe
Confidence 4456678876433 44 3554444444444433 33 33455555555 456788888888876665
No 234
>PRK03670 competence damage-inducible protein A; Provisional
Probab=29.43 E-value=1.6e+02 Score=26.35 Aligned_cols=50 Identities=18% Similarity=0.194 Sum_probs=30.5
Q ss_pred HHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC
Q 026913 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL 66 (231)
Q Consensus 7 naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L 66 (231)
|+-.++..|.+.|+.+..+++=.=|...+...+++.+.+. .+ -||.|||+
T Consensus 21 N~~~la~~L~~~G~~v~~~~iV~Dd~~~I~~~l~~a~~~~---------~D-lVIttGGl 70 (252)
T PRK03670 21 NSAFIAQKLTEKGYWVRRITTVGDDVEEIKSVVLEILSRK---------PE-VLVISGGL 70 (252)
T ss_pred hHHHHHHHHHHCCCEEEEEEEcCCCHHHHHHHHHHHhhCC---------CC-EEEECCCc
Confidence 5556777888888887777765555555555455444331 24 56666764
No 235
>PRK05458 guanosine 5'-monophosphate oxidoreductase; Provisional
Probab=29.42 E-value=4.3e+02 Score=24.63 Aligned_cols=74 Identities=15% Similarity=0.162 Sum_probs=46.8
Q ss_pred HHHHHHHHHHhcCCCccEEeeCCC--ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEE
Q 026913 7 NFCAVALALNDLGYKAVGIRLDSG--DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 7 naI~va~~l~~~g~~~~gVRlDSG--Dl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~f 84 (231)
+..+-+.+|-+.|.....|=+|+- +...+ .++.+.+.+ -++++-|++.+=-+.+.+..+.+.|+.....
T Consensus 97 ~~~~~~~~Lv~ag~~~d~i~iD~a~gh~~~~-~e~I~~ir~--------~~p~~~vi~g~V~t~e~a~~l~~aGad~i~v 167 (326)
T PRK05458 97 DEYDFVDQLAAEGLTPEYITIDIAHGHSDSV-INMIQHIKK--------HLPETFVIAGNVGTPEAVRELENAGADATKV 167 (326)
T ss_pred HHHHHHHHHHhcCCCCCEEEEECCCCchHHH-HHHHHHHHh--------hCCCCeEEEEecCCHHHHHHHHHcCcCEEEE
Confidence 344456677777654567888884 42222 222333333 2467789998888999999999999865433
Q ss_pred --eeCCc
Q 026913 85 --GIGTY 89 (231)
Q Consensus 85 --GvGT~ 89 (231)
|=||.
T Consensus 168 g~~~G~~ 174 (326)
T PRK05458 168 GIGPGKV 174 (326)
T ss_pred CCCCCcc
Confidence 44544
No 236
>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=29.29 E-value=2.4e+02 Score=24.20 Aligned_cols=65 Identities=12% Similarity=0.097 Sum_probs=36.7
Q ss_pred HHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC--CHHHHHHHHhcCCcccEEe
Q 026913 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL--NEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 12 a~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L--de~~i~~l~~~g~~id~fG 85 (231)
..++++.|+.+.-+-...++.......+..++.. + .+.-|+++.+. +...+..+.+.|.|+..|+
T Consensus 22 ~~~a~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~--------~-~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~ 88 (294)
T cd06316 22 KDEFAKLGIEVVATTDAQFDPAKQVADIETTISQ--------K-PDIIISIPVDPVSTAAAYKKVAEAGIKLVFMD 88 (294)
T ss_pred HHHHHHcCCEEEEecCCCCCHHHHHHHHHHHHHh--------C-CCEEEEcCCCchhhhHHHHHHHHcCCcEEEec
Confidence 3556677877642222335665454444444433 3 34345555443 3566788888888877665
No 237
>cd01482 vWA_collagen_alphaI-XII-like Collagen: The extracellular matrix represents a complex alloy of variable members of diverse protein families defining structural integrity and various physiological functions. The most abundant family is the collagens with more than 20 different collagen types identified thus far. Collagens are centrally involved in the formation of fibrillar and microfibrillar networks of the extracellular matrix, basement membranes as well as other structures of the extracellular matrix. Some collagens have about 15-18 vWA domains in them. The VWA domains present in these collagens mediate protein-protein interactions.
Probab=29.20 E-value=99 Score=24.74 Aligned_cols=35 Identities=20% Similarity=0.288 Sum_probs=24.3
Q ss_pred CCCCeEEEEeCCCCHH----HHHHHHhcCCcccEEeeCC
Q 026913 54 DFEKMSITASNDLNEE----TLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 54 g~~~v~I~~S~~Lde~----~i~~l~~~g~~id~fGvGT 88 (231)
+.+++-|++|+|-... .+..+.+.|..+-.+|+|.
T Consensus 102 ~~~k~iillTDG~~~~~~~~~a~~lk~~gi~i~~ig~g~ 140 (164)
T cd01482 102 GVPKVVILITDGKSQDDVELPARVLRNLGVNVFAVGVKD 140 (164)
T ss_pred CCCEEEEEEcCCCCCchHHHHHHHHHHCCCEEEEEecCc
Confidence 4667889999987643 3445666787777777764
No 238
>PRK08255 salicylyl-CoA 5-hydroxylase; Reviewed
Probab=29.02 E-value=1.8e+02 Score=29.88 Aligned_cols=36 Identities=8% Similarity=0.198 Sum_probs=25.2
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
++.|+++|++ +.+.++++.++|. +|..++|..++..
T Consensus 687 ~~pv~~~G~i~~~~~a~~~l~~g~-~D~v~~gR~~l~d 723 (765)
T PRK08255 687 GIATIAVGAISEADHVNSIIAAGR-ADLCALARPHLAD 723 (765)
T ss_pred CCEEEEeCCCCCHHHHHHHHHcCC-cceeeEcHHHHhC
Confidence 3567777877 6667777777654 5777777777764
No 239
>cd01450 vWFA_subfamily_ECM Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A
Probab=28.85 E-value=93 Score=23.86 Aligned_cols=35 Identities=23% Similarity=0.413 Sum_probs=26.2
Q ss_pred CCCCeEEEEeCCCCH------HHHHHHHhcCCcccEEeeCC
Q 026913 54 DFEKMSITASNDLNE------ETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 54 g~~~v~I~~S~~Lde------~~i~~l~~~g~~id~fGvGT 88 (231)
+..++-|++++|.+. ..+.++.++|.++..+|+|.
T Consensus 102 ~~~~~iiliTDG~~~~~~~~~~~~~~~~~~~v~v~~i~~g~ 142 (161)
T cd01450 102 NVPKVIIVLTDGRSDDGGDPKEAAAKLKDEGIKVFVVGVGP 142 (161)
T ss_pred CCCeEEEEECCCCCCCCcchHHHHHHHHHCCCEEEEEeccc
Confidence 455678888888653 34666777888889999987
No 240
>PRK06552 keto-hydroxyglutarate-aldolase/keto-deoxy-phosphogluconate aldolase; Provisional
Probab=28.81 E-value=3e+02 Score=23.88 Aligned_cols=16 Identities=13% Similarity=0.208 Sum_probs=10.6
Q ss_pred CHHHHHHHHHHHHhcC
Q 026913 200 TLKDTRERCIKQLEQM 215 (231)
Q Consensus 200 sl~~iR~~~~~~l~~L 215 (231)
+.+++++++++-++.+
T Consensus 194 ~~~~i~~~a~~~~~~~ 209 (213)
T PRK06552 194 DFDLITEKAKKYMSSL 209 (213)
T ss_pred CHHHHHHHHHHHHHHH
Confidence 5677888777665543
No 241
>PRK06223 malate dehydrogenase; Reviewed
Probab=28.72 E-value=1.5e+02 Score=26.56 Aligned_cols=38 Identities=21% Similarity=0.295 Sum_probs=19.7
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCC-cccEEeeCCccc
Q 026913 54 DFEKMSITASNDLNEETLDALNKQGH-EVDAFGIGTYLV 91 (231)
Q Consensus 54 g~~~v~I~~S~~Lde~~i~~l~~~g~-~id~fGvGT~l~ 91 (231)
+.+.+.|++||-.|.-+-.-....|. +...||+||.|-
T Consensus 110 ~~~~~viv~tNP~d~~~~~~~~~s~~~~~~viG~gt~ld 148 (307)
T PRK06223 110 APDAIVIVVTNPVDAMTYVALKESGFPKNRVIGMAGVLD 148 (307)
T ss_pred CCCeEEEEecCcHHHHHHHHHHHhCCCcccEEEeCCCcH
Confidence 33445666666555544333333343 355666666664
No 242
>PRK08208 coproporphyrinogen III oxidase; Validated
Probab=28.59 E-value=1.2e+02 Score=28.93 Aligned_cols=65 Identities=22% Similarity=0.356 Sum_probs=40.4
Q ss_pred EeeCCCChHHHH-HHHHHHHHHHhHhhCCCC-CCCeEEEE-eCCCCHHHHHHHHhcCCcccEEeeCCc
Q 026913 25 IRLDSGDLAYLS-CEARKFFRTIEKEFGVPD-FEKMSITA-SNDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 25 VRlDSGDl~~ls-~~~r~~ld~~~~~l~~~g-~~~v~I~~-S~~Lde~~i~~l~~~g~~id~fGvGT~ 89 (231)
|=+--|.+..+. .++.++++.+...+++.. -..+.|-+ -+.++++.+..|.+.|....++||=|.
T Consensus 95 i~~GGGTPs~l~~~~l~~Ll~~i~~~~~~~~~~~eitiE~~P~~lt~e~l~~l~~~G~~rvslGvQS~ 162 (430)
T PRK08208 95 FAVGGGTPTLLNAAELEKLFDSVERVLGVDLGNIPKSVETSPATTTAEKLALLAARGVNRLSIGVQSF 162 (430)
T ss_pred EEEcCCccccCCHHHHHHHHHHHHHhCCCCCCCceEEEEeCcCcCCHHHHHHHHHcCCCEEEEecccC
Confidence 333336665553 445666666655555432 12344434 357999999999999987777787665
No 243
>PLN02549 asparagine synthase (glutamine-hydrolyzing)
Probab=28.44 E-value=1.5e+02 Score=29.72 Aligned_cols=53 Identities=15% Similarity=0.260 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcC-----------CcccEEeeCC
Q 026913 34 YLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQG-----------HEVDAFGIGT 88 (231)
Q Consensus 34 ~ls~~~r~~ld~~-~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g-----------~~id~fGvGT 88 (231)
+....+|+.|.++ ..++..+ ..+-++.|||||=-.|..+...- .++.+|-||.
T Consensus 205 ~~~~~lr~~L~~aV~~rl~sd--vpvgv~LSGGLDSSlIaala~~~~~~~~~~~~~~~~l~tfsig~ 269 (578)
T PLN02549 205 YDPLVLREAFEKAVIKRLMTD--VPFGVLLSGGLDSSLVASIAARHLAETKAARQWGQQLHSFCVGL 269 (578)
T ss_pred hHHHHHHHHHHHHHHHHhccC--CceeEeecCCccHHHHHHHHHHhhhhcccccccCCCceEEecCC
Confidence 4456789999888 6666432 35789999999999999886431 2566787775
No 244
>cd00198 vWFA Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if not all A domains.
Probab=28.33 E-value=2e+02 Score=21.35 Aligned_cols=35 Identities=26% Similarity=0.359 Sum_probs=26.3
Q ss_pred CCCCeEEEEeCCCCH-------HHHHHHHhcCCcccEEeeCC
Q 026913 54 DFEKMSITASNDLNE-------ETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 54 g~~~v~I~~S~~Lde-------~~i~~l~~~g~~id~fGvGT 88 (231)
+...+-|++|++.+. +.+..+.+.+..+..+|+|+
T Consensus 100 ~~~~~lvvitDg~~~~~~~~~~~~~~~~~~~~v~v~~v~~g~ 141 (161)
T cd00198 100 NARRVIILLTDGEPNDGPELLAEAARELRKLGITVYTIGIGD 141 (161)
T ss_pred CCceEEEEEeCCCCCCCcchhHHHHHHHHHcCCEEEEEEcCC
Confidence 446678888988775 44566666788889999997
No 245
>PRK13585 1-(5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase; Provisional
Probab=28.32 E-value=2.4e+02 Score=24.12 Aligned_cols=74 Identities=16% Similarity=0.140 Sum_probs=47.3
Q ss_pred HHHHHHHHHHhcCCCccEEeeCCCCh---HHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCCccc
Q 026913 7 NFCAVALALNDLGYKAVGIRLDSGDL---AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVD 82 (231)
Q Consensus 7 naI~va~~l~~~g~~~~gVRlDSGDl---~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld-e~~i~~l~~~g~~id 82 (231)
+.+.+++.+.+.|.+..-+|-=++.. ......++++.++ ..+.+++.||++ .+.++.+.+.|+.
T Consensus 33 ~~~e~a~~~~~~G~~~l~i~dl~~~~~~~~~~~~~i~~i~~~----------~~~~l~v~GGi~~~~~~~~~~~~Ga~-- 100 (241)
T PRK13585 33 DPVEVAKRWVDAGAETLHLVDLDGAFEGERKNAEAIEKIIEA----------VGVPVQLGGGIRSAEDAASLLDLGVD-- 100 (241)
T ss_pred CHHHHHHHHHHcCCCEEEEEechhhhcCCcccHHHHHHHHHH----------cCCcEEEcCCcCCHHHHHHHHHcCCC--
Confidence 56677888878887777777444322 2233344444444 246788899988 6667777788853
Q ss_pred EEeeCCcccc
Q 026913 83 AFGIGTYLVT 92 (231)
Q Consensus 83 ~fGvGT~l~~ 92 (231)
..=+||.+..
T Consensus 101 ~v~iGs~~~~ 110 (241)
T PRK13585 101 RVILGTAAVE 110 (241)
T ss_pred EEEEChHHhh
Confidence 4456787765
No 246
>PF13768 VWA_3: von Willebrand factor type A domain
Probab=28.20 E-value=2.3e+02 Score=22.14 Aligned_cols=38 Identities=24% Similarity=0.307 Sum_probs=24.6
Q ss_pred CCCCCCeEEEEeCCCC---HHHHHHHHh-c--CCcccEEeeCCc
Q 026913 52 VPDFEKMSITASNDLN---EETLDALNK-Q--GHEVDAFGIGTY 89 (231)
Q Consensus 52 ~~g~~~v~I~~S~~Ld---e~~i~~l~~-~--g~~id~fGvGT~ 89 (231)
.++....-|++|+|.. ++.+.+..+ . ...+.+||+|..
T Consensus 93 ~~~~~~~IilltDG~~~~~~~~i~~~v~~~~~~~~i~~~~~g~~ 136 (155)
T PF13768_consen 93 RPGCVRAIILLTDGQPVSGEEEILDLVRRARGHIRIFTFGIGSD 136 (155)
T ss_pred cCCCccEEEEEEeccCCCCHHHHHHHHHhcCCCceEEEEEECCh
Confidence 3455667888998883 444444443 2 347889999973
No 247
>cd05293 LDH_1 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed of eukaryotic LDHs. Vertebrate LDHs are non-allosteric. This is in contrast to some bacterial LDHs that are activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=27.99 E-value=95 Score=28.44 Aligned_cols=55 Identities=18% Similarity=0.150 Sum_probs=27.3
Q ss_pred HHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc-ccEEeeCCcccc
Q 026913 38 EARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE-VDAFGIGTYLVT 92 (231)
Q Consensus 38 ~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~-id~fGvGT~l~~ 92 (231)
.-.+++.+.+.++.-.+++-+.|++||-.|.-+-.-....|.| .-.||+||.|-+
T Consensus 95 ~N~~i~~~~~~~i~~~~p~~~vivvsNP~d~~t~~~~k~sg~p~~~viG~gt~Ld~ 150 (312)
T cd05293 95 RNVDIFKGIIPKLVKYSPNAILLVVSNPVDIMTYVAWKLSGLPKHRVIGSGCNLDS 150 (312)
T ss_pred HHHHHHHHHHHHHHHhCCCcEEEEccChHHHHHHHHHHHhCCCHHHEEecCchHHH
Confidence 3334444444444333556667777766664332222223442 456777776633
No 248
>PRK10550 tRNA-dihydrouridine synthase C; Provisional
Probab=27.97 E-value=2.5e+02 Score=25.71 Aligned_cols=33 Identities=15% Similarity=0.164 Sum_probs=14.7
Q ss_pred EEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 59 SITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 59 ~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
.|+++||+ +.+.+.++.+.+ -.|+..||..+..
T Consensus 196 PVi~nGdI~t~~da~~~l~~~-g~DgVmiGRg~l~ 229 (312)
T PRK10550 196 PVIANGEIWDWQSAQQCMAIT-GCDAVMIGRGALN 229 (312)
T ss_pred cEEEeCCcCCHHHHHHHHhcc-CCCEEEEcHHhHh
Confidence 45555554 444444444321 1345555554444
No 249
>TIGR02151 IPP_isom_2 isopentenyl-diphosphate delta-isomerase, type 2. Isopentenyl-diphosphate delta-isomerase (IPP isomerase) interconverts isopentenyl diphosphate and dimethylallyl diphosphate. This model represents the type 2 enzyme. FMN, NADPH, and Mg2+ are required by this form, which lacks homology to the type 1 enzyme (TIGR02150). IPP is precursor to many compounds, including enzyme cofactors, sterols, and isoprenoids.
Probab=27.85 E-value=46 Score=30.72 Aligned_cols=36 Identities=22% Similarity=0.268 Sum_probs=31.2
Q ss_pred CCeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 56 EKMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 56 ~~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
.++.|++|||+ +...+.+....| .|+.|+|+.+...
T Consensus 253 ~~ipVIasGGI~~~~di~kaLalG--Ad~V~igr~~L~~ 289 (333)
T TIGR02151 253 PDAPIIASGGLRTGLDVAKAIALG--ADAVGMARPFLKA 289 (333)
T ss_pred CCCeEEEECCCCCHHHHHHHHHhC--CCeehhhHHHHHH
Confidence 35789999999 899999998889 7899999988763
No 250
>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR. Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b
Probab=27.75 E-value=3.5e+02 Score=22.35 Aligned_cols=64 Identities=17% Similarity=0.101 Sum_probs=35.3
Q ss_pred HHHHHhcCCCccEEeeCCC-ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEee
Q 026913 12 ALALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 12 a~~l~~~g~~~~gVRlDSG-Dl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGv 86 (231)
.+++++.|+.+. -.+++ |.......++. |... +. +.-|+.+.+.+...+..+.++|.|+..|+-
T Consensus 22 ~~~a~~~g~~~~--~~~~~~~~~~~~~~~~~-l~~~-------~~-dgiii~~~~~~~~~l~~~~~~~ipvV~~~~ 86 (267)
T cd06283 22 EDVCRAHGYQVL--VCNSDNDPEKEKEYLES-LLAY-------QV-DGLIVNPTGNNKELYQRLAKNGKPVVLVDR 86 (267)
T ss_pred HHHHHHcCCEEE--EEcCCCCHHHHHHHHHH-HHHc-------Cc-CEEEEeCCCCChHHHHHHhcCCCCEEEEcC
Confidence 344566777663 23444 44333222222 2221 33 435666666677678888888888777653
No 251
>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=27.70 E-value=2.9e+02 Score=23.27 Aligned_cols=63 Identities=19% Similarity=0.266 Sum_probs=35.3
Q ss_pred HHHHHhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC--HHHHHHHHhcCCcccEEe
Q 026913 12 ALALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (231)
Q Consensus 12 a~~l~~~g~~~~gVRlDS-GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld--e~~i~~l~~~g~~id~fG 85 (231)
..++++.|+.+. ..++ +|.....+.++.+... + -+.-|+.+.+.+ ...+..+.+.|.|+..|+
T Consensus 22 ~~~~~~~g~~v~--~~~~~~~~~~~~~~i~~~~~~--------~-~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~ 87 (282)
T cd06318 22 KAHAKALGYELI--STDAQGDLTKQIADVEDLLTR--------G-VNVLIINPVDPEGLVPAVAAAKAAGVPVVVVD 87 (282)
T ss_pred HHHHHHcCCEEE--EEcCCCCHHHHHHHHHHHHHc--------C-CCEEEEecCCccchHHHHHHHHHCCCCEEEec
Confidence 445666787663 3455 4655444434443332 3 333455544444 356778888888887775
No 252
>cd07410 MPP_CpdB_N Escherichia coli CpdB and related proteins, N-terminal metallophosphatase domain. CpdB is a bacterial periplasmic protein with an N-terminal metallophosphatase domain and a C-terminal 3'-nucleotidase domain. This alignment model represents the N-terminal metallophosphatase domain, which has 2',3'-cyclic phosphodiesterase activity, hydrolyzing the 2',3'-cyclic phosphates of adenosine, guanosine, cytosine and uridine to yield nucleoside and phosphate. CpdB also hydrolyzes the chromogenic substrates p-nitrophenyl phosphate (PNPP), bis(PNPP) and p-nitrophenyl phosphorylcholine (NPPC). CpdB is thought to play a scavenging role during RNA hydrolysis by converting the non-transportable nucleotides produced by RNaseI to nucleosides which can easily enter a cell for use as a carbon source. This family also includes YfkN, a Bacillus subtilis nucleotide phosphoesterase with two copies of each of the metallophosphatase and 3'-nucleotidase domains. The N-terminal metallophos
Probab=27.66 E-value=3.5e+02 Score=23.67 Aligned_cols=96 Identities=11% Similarity=0.172 Sum_probs=50.3
Q ss_pred CchHHHHHHHHHHHhcCCCccEEeeCCCChHHHH--------------HHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC-
Q 026913 3 SGVPNFCAVALALNDLGYKAVGIRLDSGDLAYLS--------------CEARKFFRTIEKEFGVPDFEKMSITASNDLN- 67 (231)
Q Consensus 3 sGv~naI~va~~l~~~g~~~~gVRlDSGDl~~ls--------------~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld- 67 (231)
.|+...-.+.+.+++.+ ..-+-+|+||...-+ ..+.+.|..+ |+. +-.+---++|
T Consensus 27 gg~~~l~~~i~~~r~~~--~~~l~ld~GD~~~gs~~~~~~~~~~~~~~~~~~~~ln~~-------g~d-~~~lGNHe~d~ 96 (277)
T cd07410 27 GGLARVATLIKKARAEN--PNTLLIDNGDTIQGSPLADYYAKIEDGDPHPMIAAMNAL-------GYD-AGTLGNHEFNY 96 (277)
T ss_pred cCHHHHHHHHHHHHhcC--CCeEEEeCCccCCccHHHHHhhhcccCCCChHHHHHHhc-------CCC-EEeecccCccc
Confidence 36666666777777653 357899999984222 1244555554 553 2222222344
Q ss_pred -HHHHHHHHh-cCCcccEEeeCCcccccCCCCccceEEEEeEEC-Ccc
Q 026913 68 -EETLDALNK-QGHEVDAFGIGTYLVTCYAQAALGCVFKLVEIN-KQP 112 (231)
Q Consensus 68 -e~~i~~l~~-~g~~id~fGvGT~l~~~~~~p~l~~vyKlv~~~-g~p 112 (231)
.+.+.++.+ .+.+. +++++......++..--|++.+++ |..
T Consensus 97 g~~~l~~~~~~~~~~~----l~aNv~~~~~~~~~~~~~~i~~~~~g~k 140 (277)
T cd07410 97 GLDYLDKVIKQANFPV----LSANVIDADTGEPFLKPYVILERDVGVK 140 (277)
T ss_pred CHHHHHHHHHhCCCCE----EEEEEEeCCCCCcccCCEEEEEecCCCE
Confidence 234444443 34443 344554433222333457888888 863
No 253
>cd01475 vWA_Matrilin VWA_Matrilin: In cartilaginous plate, extracellular matrix molecules mediate cell-matrix and matrix-matrix interactions thereby providing tissue integrity. Some members of the matrilin family are expressed specifically in developing cartilage rudiments. The matrilin family consists of at least four members. All the members of the matrilin family contain VWA domains, EGF-like domains and a heptad repeat coiled-coiled domain at the carboxy terminus which is responsible for the oligomerization of the matrilins. The VWA domains have been shown to be essential for matrilin network formation by interacting with matrix ligands.
Probab=27.46 E-value=1.3e+02 Score=25.53 Aligned_cols=33 Identities=21% Similarity=0.322 Sum_probs=23.5
Q ss_pred CCeEEEEeCCCC----HHHHHHHHhcCCcccEEeeCC
Q 026913 56 EKMSITASNDLN----EETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 56 ~~v~I~~S~~Ld----e~~i~~l~~~g~~id~fGvGT 88 (231)
+++-|++++|-. ...+..+.+.|..+-+.|||.
T Consensus 109 ~kvvillTDG~s~~~~~~~a~~lk~~gv~i~~VgvG~ 145 (224)
T cd01475 109 PRVGIVVTDGRPQDDVSEVAAKARALGIEMFAVGVGR 145 (224)
T ss_pred CeEEEEEcCCCCcccHHHHHHHHHHCCcEEEEEeCCc
Confidence 677899999965 334555666787777778875
No 254
>PRK02083 imidazole glycerol phosphate synthase subunit HisF; Provisional
Probab=26.64 E-value=2.9e+02 Score=24.06 Aligned_cols=76 Identities=16% Similarity=0.125 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCCCc-cEEeeC-CCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCCcccE
Q 026913 7 NFCAVALALNDLGYKA-VGIRLD-SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGHEVDA 83 (231)
Q Consensus 7 naI~va~~l~~~g~~~-~gVRlD-SGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld-e~~i~~l~~~g~~id~ 83 (231)
+.+++++.+.+.|... .-+=+| ++.-...-..+.+.+.+. .++.|+++||+. .+.++++.+.| .+.
T Consensus 31 d~~~~a~~~~~~G~~~i~i~dl~~~~~~~~~~~~~i~~i~~~---------~~ipv~~~GGi~s~~~~~~~l~~G--a~~ 99 (253)
T PRK02083 31 DPVELAKRYNEEGADELVFLDITASSEGRDTMLDVVERVAEQ---------VFIPLTVGGGIRSVEDARRLLRAG--ADK 99 (253)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCcccccCcchHHHHHHHHHh---------CCCCEEeeCCCCCHHHHHHHHHcC--CCE
Confidence 4567777777777542 233333 111111111222222222 246799999997 88899988877 566
Q ss_pred EeeCCccccc
Q 026913 84 FGIGTYLVTC 93 (231)
Q Consensus 84 fGvGT~l~~~ 93 (231)
.-+||.+..+
T Consensus 100 Viigt~~l~~ 109 (253)
T PRK02083 100 VSINSAAVAN 109 (253)
T ss_pred EEEChhHhhC
Confidence 7788888764
No 255
>COG0149 TpiA Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=26.62 E-value=2.1e+02 Score=25.78 Aligned_cols=54 Identities=19% Similarity=0.262 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 33 AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 33 ~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
.....-+|+.+.+. ++-. ++|+|...|+++...+.++..+ -.+|++-||+.-..
T Consensus 183 ~~v~~~Ir~~~~~~---~~~~--~~v~IlYGGSV~~~N~~e~~~~-~~idG~LVGgAslk 236 (251)
T COG0149 183 EEVHAFIRAVLAEL---FGAE--EKVRILYGGSVKPGNAAELAAQ-PDIDGALVGGASLK 236 (251)
T ss_pred HHHHHHHHHHHHHh---cCCC--CCeEEEEeCCcChhHHHHHhcC-CCCCeEEEcceeec
Confidence 33444455555553 3332 7899999999999999999865 34899999987655
No 256
>TIGR00419 tim triosephosphate isomerase. Triosephosphate isomerase (tim/TPIA) is the glycolytic enzyme that catalyzes the reversible interconversion of glyceraldehyde 3-phosphate and dihydroxyacetone phosphate. The active site of the enzyme is located between residues 240-258 of the model ([AV]-Y-E-P-[LIVM]-W-[SA]-I-G-T-[GK]) with E being the active site residue. There is a slight deviation from this sequence within the archeal members of this family.
Probab=26.55 E-value=90 Score=27.11 Aligned_cols=35 Identities=9% Similarity=0.086 Sum_probs=29.6
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCccc
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLV 91 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~ 91 (231)
++++|+..|+++.+.+.+|..+ ..+|++.||+.-.
T Consensus 168 ~~~~IlYGGSV~~~N~~~l~~~-~~iDG~LvG~Asl 202 (205)
T TIGR00419 168 ESVRVLCGAGISTGEDAELAAQ-LGAEGVLLASGSL 202 (205)
T ss_pred CCceEEEeCCCCHHHHHHHhcC-CCCCEEEEeeeee
Confidence 5789999999999999999765 3389999997644
No 257
>PLN02389 biotin synthase
Probab=26.52 E-value=5.2e+02 Score=24.46 Aligned_cols=70 Identities=16% Similarity=0.229 Sum_probs=40.0
Q ss_pred HHHHHHHHHHhcCCCccE----EeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCC-CCHHHHHHHHhcCCcc
Q 026913 7 NFCAVALALNDLGYKAVG----IRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASND-LNEETLDALNKQGHEV 81 (231)
Q Consensus 7 naI~va~~l~~~g~~~~g----VRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~-Lde~~i~~l~~~g~~i 81 (231)
..++.++++.+.|.+-.. .|..+|.+.. -..+.++++.+. +. + ..|.+|.| ++++.+.+|.+.| +
T Consensus 120 eIl~~a~~~~~~G~~~~~ivts~rg~~~e~~~-~e~i~eiir~ik-~~---~---l~i~~s~G~l~~E~l~~LkeAG--l 189 (379)
T PLN02389 120 DVLEAAKRAKEAGSTRFCMGAAWRDTVGRKTN-FNQILEYVKEIR-GM---G---MEVCCTLGMLEKEQAAQLKEAG--L 189 (379)
T ss_pred HHHHHHHHHHHcCCCEEEEEecccCCCCChhH-HHHHHHHHHHHh-cC---C---cEEEECCCCCCHHHHHHHHHcC--C
Confidence 345667777777765321 2334443222 234445555442 11 2 34667755 8999999999998 5
Q ss_pred cEEee
Q 026913 82 DAFGI 86 (231)
Q Consensus 82 d~fGv 86 (231)
|.|.+
T Consensus 190 d~~~~ 194 (379)
T PLN02389 190 TAYNH 194 (379)
T ss_pred CEEEe
Confidence 66655
No 258
>PRK06843 inosine 5-monophosphate dehydrogenase; Validated
Probab=26.36 E-value=5e+02 Score=25.03 Aligned_cols=40 Identities=15% Similarity=0.189 Sum_probs=32.8
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccccCCCCc
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~~~~p~ 98 (231)
++.||+.||+ +...|.+-+..|+ ++-.||+.++.+...|.
T Consensus 256 ~vpVIAdGGI~~~~Di~KALalGA--~aVmvGs~~agt~Espg 296 (404)
T PRK06843 256 NICIIADGGIRFSGDVVKAIAAGA--DSVMIGNLFAGTKESPS 296 (404)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcCC--CEEEEcceeeeeecCCC
Confidence 4689999999 7888888888884 67789999998776663
No 259
>PRK12376 putative translaldolase; Provisional
Probab=26.15 E-value=1.7e+02 Score=26.04 Aligned_cols=45 Identities=18% Similarity=0.185 Sum_probs=38.0
Q ss_pred ee-CCC-ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC
Q 026913 26 RL-DSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (231)
Q Consensus 26 Rl-DSG-Dl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~ 79 (231)
|+ |+| |...+.++++++++. . .+++|++..==+.+-+.+....|+
T Consensus 147 R~dd~g~D~~~~i~~i~~i~~~--------~-~~tkILaASiR~~~~v~~a~~~Ga 193 (236)
T PRK12376 147 RIADTGVDPVPLMKEALAICHS--------K-PGVELLWASPREVYNIIQADQLGC 193 (236)
T ss_pred hhhhcCCCcHHHHHHHHHHHHh--------C-CCcEEEEEecCCHHHHHHHHHcCC
Confidence 77 665 888999999999976 3 578999999999999999988885
No 260
>PRK12928 lipoyl synthase; Provisional
Probab=26.14 E-value=3.6e+02 Score=24.42 Aligned_cols=73 Identities=15% Similarity=0.071 Sum_probs=39.9
Q ss_pred HHHHHHHHHHhcCCCc---cEEee-CCCC--hHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCC--CHHHHHHHHhcC
Q 026913 7 NFCAVALALNDLGYKA---VGIRL-DSGD--LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDL--NEETLDALNKQG 78 (231)
Q Consensus 7 naI~va~~l~~~g~~~---~gVRl-DSGD--l~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~L--de~~i~~l~~~g 78 (231)
..+++++++.+.|.+- .|+.. |-.| ..++..-++++-... +-..+.++..+-+ +.+.+..+.+.|
T Consensus 91 ei~~~a~~~~~~G~keivitg~~~dDl~d~g~~~~~ell~~Ik~~~-------p~~~I~~ltp~~~~~~~e~L~~l~~Ag 163 (290)
T PRK12928 91 EPERVAEAVAALGLRYVVLTSVARDDLPDGGAAHFVATIAAIRARN-------PGTGIEVLTPDFWGGQRERLATVLAAK 163 (290)
T ss_pred HHHHHHHHHHHCCCCEEEEEEEeCCcccccCHHHHHHHHHHHHhcC-------CCCEEEEeccccccCCHHHHHHHHHcC
Confidence 3457788888888763 45543 3233 223333333322211 2234565544333 578899999888
Q ss_pred CcccEEee
Q 026913 79 HEVDAFGI 86 (231)
Q Consensus 79 ~~id~fGv 86 (231)
..+-.+++
T Consensus 164 ~~i~~hnl 171 (290)
T PRK12928 164 PDVFNHNL 171 (290)
T ss_pred chhhcccC
Confidence 76656554
No 261
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=26.04 E-value=2e+02 Score=24.33 Aligned_cols=35 Identities=23% Similarity=0.347 Sum_probs=25.7
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCccccc
Q 026913 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
++.|+++||+. .+.+.++.+.| ++++-||+.+...
T Consensus 190 ~ipvi~~GGi~~~~di~~~~~~G--a~gv~vg~~~~~~ 225 (234)
T cd04732 190 GIPVIASGGVSSLDDIKALKELG--VAGVIVGKALYEG 225 (234)
T ss_pred CCCEEEecCCCCHHHHHHHHHCC--CCEEEEeHHHHcC
Confidence 45788888887 44577777776 6788888888664
No 262
>PF02057 Glyco_hydro_59: Glycosyl hydrolase family 59; InterPro: IPR001286 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Glycoside hydrolase family 59 GH59 from CAZY comprises enzymes with only one known activity; galactocerebrosidase (3.2.1.46 from EC). Globoid cell leukodystrophy (Krabbe disease) is a severe, autosomal recessive disorder that results from deficiency of galactocerebrosidase (GALC) activity [, , ]. GALC is responsible for the lysosomal catabolism of certain galactolipids, including galactosylceramide and psychosine [].; GO: 0004336 galactosylceramidase activity, 0006683 galactosylceramide catabolic process; PDB: 3ZR6_A 3ZR5_A.
Probab=25.49 E-value=1.1e+02 Score=31.44 Aligned_cols=41 Identities=24% Similarity=0.192 Sum_probs=25.6
Q ss_pred CccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCH
Q 026913 21 KAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNE 68 (231)
Q Consensus 21 ~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde 68 (231)
...|++=.-+=.....+..|+.|++. ||.+||||++++.-+
T Consensus 175 dYvg~~NEr~~~~~~ik~lr~~l~~~-------gy~~vkiva~D~~~~ 215 (669)
T PF02057_consen 175 DYVGIWNERGFDVNYIKWLRKALNSN-------GYNKVKIVAADNNWE 215 (669)
T ss_dssp -EE-S-TTS---HHHHHHHHHHHHHT-------T-TT-EEEEEEE-ST
T ss_pred eEechhhccCCChhHHHHHHHHHhhc-------cccceEEEEeCCCcc
Confidence 34566555554566778899999987 999999999998864
No 263
>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation. Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.
Probab=25.41 E-value=3.9e+02 Score=22.13 Aligned_cols=63 Identities=11% Similarity=0.027 Sum_probs=35.8
Q ss_pred HHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEee
Q 026913 14 ALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 14 ~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGv 86 (231)
++++.|+.+.-+ ....|.......++.++.. + -+.-|+.+...++..+..+.+.|.|+..++-
T Consensus 24 ~~~~~g~~~~~~-~~~~~~~~~~~~i~~l~~~--------~-vdgiii~~~~~~~~~~~~l~~~~ipvV~~~~ 86 (268)
T cd06298 24 IATMYKYNIILS-NSDNDKEKELKVLNNLLAK--------Q-VDGIIFMGGKISEEHREEFKRSPTPVVLAGS 86 (268)
T ss_pred HHHHcCCeEEEE-eCCCCHHHHHHHHHHHHHh--------c-CCEEEEeCCCCcHHHHHHHhcCCCCEEEEcc
Confidence 455678876444 3333444443333333322 2 3545666666777788888777878766653
No 264
>cd01467 vWA_BatA_type VWA BatA type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses. In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=25.33 E-value=2.6e+02 Score=22.28 Aligned_cols=35 Identities=17% Similarity=0.306 Sum_probs=23.7
Q ss_pred CCCeEEEEeCCCC------HHHHHH-HHhcCCcccEEeeCCc
Q 026913 55 FEKMSITASNDLN------EETLDA-LNKQGHEVDAFGIGTY 89 (231)
Q Consensus 55 ~~~v~I~~S~~Ld------e~~i~~-l~~~g~~id~fGvGT~ 89 (231)
-.++-|++|+|.+ ...+.+ +.+.|.++.++|+|+.
T Consensus 102 ~~~~iiliTDG~~~~g~~~~~~~~~~~~~~gi~i~~i~ig~~ 143 (180)
T cd01467 102 KERVIVLLTDGENNAGEIDPATAAELAKNKGVRIYTIGVGKS 143 (180)
T ss_pred CCCEEEEEeCCCCCCCCCCHHHHHHHHHHCCCEEEEEEecCC
Confidence 3467888898853 223333 4457888999999963
No 265
>cd05292 LDH_2 A subgroup of L-lactate dehydrogenases. L-lactate dehydrogenases (LDH) are tetrameric enzymes catalyzing the last step of glycolysis in which pyruvate is converted to L-lactate. This subgroup is composed predominantly of bacterial LDHs and a few fungal LDHs. Bacterial LDHs may be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. LDHs are part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate dehydrogenases, formate/glycerate dehydrogenases, siroheme synthases, 6-phosphogluconate dehydrogenases, aminoacid dehydrogenases, repressor rex, and NAD-binding potassium channel domains, among others.
Probab=25.04 E-value=1.3e+02 Score=27.30 Aligned_cols=59 Identities=19% Similarity=0.122 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC-cccEEeeCCcc
Q 026913 32 LAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH-EVDAFGIGTYL 90 (231)
Q Consensus 32 l~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~-~id~fGvGT~l 90 (231)
-..|...-.+++.+...++.--+++-+-|+++|-.|.-.-.-....|. +.-.||+||.|
T Consensus 85 r~dl~~~n~~i~~~~~~~l~~~~~~giiiv~tNP~d~~~~~~~~~sg~p~~~viG~gt~L 144 (308)
T cd05292 85 RLDLLKRNVAIFKEIIPQILKYAPDAILLVVTNPVDVLTYVAYKLSGLPPNRVIGSGTVL 144 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCeEEEEecCcHHHHHHHHHHHHCcCHHHeecccchh
Confidence 334444444455554444433344555666666443333222222344 34567777777
No 266
>COG3693 XynA Beta-1,4-xylanase [Carbohydrate transport and metabolism]
Probab=24.67 E-value=51 Score=31.01 Aligned_cols=24 Identities=21% Similarity=0.444 Sum_probs=21.2
Q ss_pred HHHHHHhcCCcccEEeeCCccccc
Q 026913 70 TLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 70 ~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
.|++|+++|+|||+.|+=.|+...
T Consensus 209 lI~~LkekG~pIDgiG~QsH~~~~ 232 (345)
T COG3693 209 LIEELKEKGAPIDGIGIQSHFSGD 232 (345)
T ss_pred HHHHHHHCCCCccceeeeeeecCC
Confidence 688899999999999999997664
No 267
>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso
Probab=24.65 E-value=3.7e+02 Score=22.23 Aligned_cols=64 Identities=17% Similarity=0.156 Sum_probs=34.2
Q ss_pred HHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEe
Q 026913 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFG 85 (231)
Q Consensus 12 a~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fG 85 (231)
..++++.|+.+.- ..+.+.......+++++.+ +.-+.-|+.+...+...+..+.+.+.|+..|+
T Consensus 26 ~~~~~~~g~~~~~--~~~~~~~~~~~~~~~~~~~--------~~vdgiii~~~~~~~~~~~~~~~~~ipvV~~~ 89 (268)
T cd06271 26 SEALAEHGYDLVL--LPVDPDEDPLEVYRRLVES--------GLVDGVIISRTRPDDPRVALLLERGFPFVTHG 89 (268)
T ss_pred HHHHHHCCceEEE--ecCCCcHHHHHHHHHHHHc--------CCCCEEEEecCCCCChHHHHHHhcCCCEEEEC
Confidence 3445667776522 2333333334445555543 22343455554445556777877888877664
No 268
>TIGR00381 cdhD CO dehydrogenase/acetyl-CoA synthase, delta subunit. This is the small subunit of a heterodimer which catalyzes the reaction CO + H2O + Acceptor = CO2 + Reduced acceptor and is involved in the synthesis of acetyl-CoA from CO2 and H2.
Probab=24.60 E-value=3.6e+02 Score=25.97 Aligned_cols=31 Identities=19% Similarity=0.210 Sum_probs=25.3
Q ss_pred HhcCCCccEEeeCCCChH-------HHHHHHHHHHHHH
Q 026913 16 NDLGYKAVGIRLDSGDLA-------YLSCEARKFFRTI 46 (231)
Q Consensus 16 ~~~g~~~~gVRlDSGDl~-------~ls~~~r~~ld~~ 46 (231)
+..|..+..||+.|||+. .+++-+.+.++..
T Consensus 150 ~~~~aD~Ialr~~S~DP~~~d~~~~e~a~~vk~V~~av 187 (389)
T TIGR00381 150 KEFGADMVTIHLISTDPKLDDKSPSEAAKVLEDVLQAV 187 (389)
T ss_pred HHhCCCEEEEEecCCCccccccCHHHHHHHHHHHHHhC
Confidence 456888999999999998 7887777777664
No 269
>TIGR02134 transald_staph transaldolase. This small family of proteins is a member of the transaldolase sybfamily represented by pfam00923. Coxiella and Staphylococcus lack members of the known transaldolase equivalog families and appear to require a transaldolase activity for completion of the pentose phosphate pathway.
Probab=24.56 E-value=1.7e+02 Score=26.12 Aligned_cols=47 Identities=15% Similarity=0.098 Sum_probs=38.8
Q ss_pred Eee-CCC-ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026913 25 IRL-DSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (231)
Q Consensus 25 VRl-DSG-Dl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~ 80 (231)
=|+ |.| |...+.++++++++.. .+++|++..==+..-+.+....|+.
T Consensus 146 gR~dd~g~D~~~~i~~i~~i~~~~---------~~tkILaAS~R~~~~v~~a~~~Gad 194 (236)
T TIGR02134 146 GRIADTGVDPEPHMREALEIVAQK---------PGVELLWASPRELFNIIQADRIGCD 194 (236)
T ss_pred chhhhcCCCcHHHHHHHHHHHHhC---------CCcEEEEEccCCHHHHHHHHHcCCC
Confidence 388 765 8999999999999872 4789999998899988888877753
No 270
>COG0069 GltB Glutamate synthase domain 2 [Amino acid transport and metabolism]
Probab=24.46 E-value=78 Score=31.24 Aligned_cols=63 Identities=24% Similarity=0.328 Sum_probs=42.2
Q ss_pred CChHHHHHH-HHHHHHHHhHhhCCCCCCC-eEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccccCCCCccceEEEEe
Q 026913 30 GDLAYLSCE-ARKFFRTIEKEFGVPDFEK-MSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAALGCVFKLV 106 (231)
Q Consensus 30 GDl~~ls~~-~r~~ld~~~~~l~~~g~~~-v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~~~~p~l~~vyKlv 106 (231)
|-|.++..- +-+.|.+. |+.+ ++|.+||+| +...+.....-| .|.||+||.-.- +++|+|.-+
T Consensus 352 GiP~e~glae~~q~L~~~-------glRd~v~l~~~Ggl~Tg~DVaka~aLG--Ad~v~~gTa~li-----a~GCim~r~ 417 (485)
T COG0069 352 GIPWELGLAETHQTLVLN-------GLRDKVKLIADGGLRTGADVAKAAALG--ADAVGFGTAALV-----ALGCIMCRV 417 (485)
T ss_pred CchHHHHHHHHHHHHHHc-------CCcceeEEEecCCccCHHHHHHHHHhC--cchhhhchHHHH-----HhhhHhhhh
Confidence 555444432 55555554 7655 999999998 456666666678 478999998766 577776433
No 271
>PRK03512 thiamine-phosphate pyrophosphorylase; Provisional
Probab=24.45 E-value=1.6e+02 Score=25.37 Aligned_cols=37 Identities=14% Similarity=0.158 Sum_probs=31.1
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
.++.|++=||++.+.+.++.+.| .+++.|-+.+.++.
T Consensus 157 ~~~PV~AiGGI~~~ni~~l~~~G--a~GiAvisai~~~~ 193 (211)
T PRK03512 157 ADYPTVAIGGISLERAPAVLATG--VGSIAVVSAITQAA 193 (211)
T ss_pred CCCCEEEECCCCHHHHHHHHHcC--CCEEEEhhHhhCCC
Confidence 45789999999999999999988 67888888877644
No 272
>PRK11815 tRNA-dihydrouridine synthase A; Provisional
Probab=24.44 E-value=2.8e+02 Score=25.50 Aligned_cols=33 Identities=18% Similarity=0.191 Sum_probs=21.9
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccc
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
++.|+++||+ +.+.+.++.+ + +|+.-||..+..
T Consensus 205 ~iPVI~nGgI~s~eda~~~l~-~--aDgVmIGRa~l~ 238 (333)
T PRK11815 205 HLTIEINGGIKTLEEAKEHLQ-H--VDGVMIGRAAYH 238 (333)
T ss_pred CCeEEEECCcCCHHHHHHHHh-c--CCEEEEcHHHHh
Confidence 5667777777 5666666664 3 677777777666
No 273
>PRK08599 coproporphyrinogen III oxidase; Provisional
Probab=24.42 E-value=5.3e+02 Score=23.80 Aligned_cols=67 Identities=21% Similarity=0.390 Sum_probs=44.6
Q ss_pred ccEEeeCCCChHHH-HHHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCcccEEeeCC
Q 026913 22 AVGIRLDSGDLAYL-SCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGT 88 (231)
Q Consensus 22 ~~gVRlDSGDl~~l-s~~~r~~ld~~~~~l~~~g~~~v~I~~S-~~Lde~~i~~l~~~g~~id~fGvGT 88 (231)
+..|-+=-|.+..+ ..++.++++.+...+++.+...+.|-++ +.+|++.+..|.+.|..-.++||=|
T Consensus 52 i~~i~~gGGtpt~l~~~~l~~ll~~i~~~~~~~~~~eit~e~~p~~l~~e~l~~l~~~G~~rvsiGvqS 120 (377)
T PRK08599 52 LKTIYIGGGTPTALSAEQLERLLTAIHRNLPLSGLEEFTFEANPGDLTKEKLQVLKDSGVNRISLGVQT 120 (377)
T ss_pred eeEEEeCCCCcccCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEeccc
Confidence 44555555666544 3456777777766676655445565555 6799999999999986656666654
No 274
>PRK10703 DNA-binding transcriptional repressor PurR; Provisional
Probab=24.32 E-value=4.7e+02 Score=22.97 Aligned_cols=31 Identities=13% Similarity=0.146 Sum_probs=20.9
Q ss_pred CeEEEEeCCCCHHHHHHHHh-cCCcccEEeeC
Q 026913 57 KMSITASNDLNEETLDALNK-QGHEVDAFGIG 87 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~-~g~~id~fGvG 87 (231)
+.-|++....+++.+..+.+ .|.|+..|+-+
T Consensus 117 dgiii~~~~~~~~~~~~l~~~~~iPvV~~d~~ 148 (341)
T PRK10703 117 DGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWG 148 (341)
T ss_pred CEEEEecCCCCHHHHHHHHhcCCCCEEEEecc
Confidence 43455555667777788877 68887777643
No 275
>KOG0677 consensus Actin-related protein Arp2/3 complex, subunit Arp2 [Cytoskeleton]
Probab=24.29 E-value=45 Score=30.84 Aligned_cols=29 Identities=34% Similarity=0.412 Sum_probs=23.8
Q ss_pred CchHHHHHHHHHHHhcCCCccEEeeCCCCh
Q 026913 3 SGVPNFCAVALALNDLGYKAVGIRLDSGDL 32 (231)
Q Consensus 3 sGv~naI~va~~l~~~g~~~~gVRlDSGDl 32 (231)
.||.-||+.-..|-+.|. +.||=+||||=
T Consensus 131 ~gvyvaiQAVLtLYAQGL-~tGvVvDSGDG 159 (389)
T KOG0677|consen 131 GGVYVAIQAVLTLYAQGL-LTGVVVDSGDG 159 (389)
T ss_pred CeEEehHHHHHHHHHhcc-cceEEEecCCC
Confidence 477788988888888876 67999999983
No 276
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=24.27 E-value=4.7e+02 Score=25.17 Aligned_cols=40 Identities=15% Similarity=0.219 Sum_probs=31.6
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCcccccCCCCc
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCYAQAA 98 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~~~~p~ 98 (231)
++.|+++||+ +...|.+.+..| .++..|||.|..+...|.
T Consensus 327 ~vpviadGGi~~~~di~kAla~G--A~~V~~G~~~a~~~e~pg 367 (450)
T TIGR01302 327 GIPVIADGGIRYSGDIVKALAAG--ADAVMLGSLLAGTTESPG 367 (450)
T ss_pred CCeEEEeCCCCCHHHHHHHHHcC--CCEEEECchhhcCCcCCC
Confidence 4679999887 466777777788 578899999999877764
No 277
>cd06326 PBP1_STKc_like Type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins. The type I periplasmic binding domain of uncharacterized extracellular ligand-binding proteins, some of which contain a conserved catalytic serine/threonine protein kinase (STKc) domain in the N-terminal region. Members of this group are sequence-similar to the branched-chain amino acid ABC transporter leucine-isoleucine-valine-binding protein (LIVBP); their ligand specificity has not been determined experimentally, however.
Probab=24.23 E-value=3.7e+02 Score=23.37 Aligned_cols=76 Identities=18% Similarity=0.108 Sum_probs=38.7
Q ss_pred hHHHHHHH-HHHHh----cCCCccEEeeCCC-ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEE--eCCC-CHHHHHHHH
Q 026913 5 VPNFCAVA-LALND----LGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITA--SNDL-NEETLDALN 75 (231)
Q Consensus 5 v~naI~va-~~l~~----~g~~~~gVRlDSG-Dl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~--S~~L-de~~i~~l~ 75 (231)
+.++++.+ +++.+ .|+.+.-+..|++ |+..-...++++.++ .+|..++ .++. .+..+..+.
T Consensus 20 ~~~~~~~a~~~iN~~ggi~G~~v~l~~~D~~~d~~~~~~~~~~l~~~----------~~v~avig~~~s~~~~~~~~~~~ 89 (336)
T cd06326 20 YRAGAQAYFDAVNAAGGVNGRKIELVTLDDGYEPERTVANTRKLIED----------DKVFALFGYVGTPTTAAALPLLE 89 (336)
T ss_pred HHHHHHHHHHHHHhcCCcCCceEEEEEeCCCCChHHHHHHHHHHHhh----------cCcEEEEeCCCchhHHHHHHHHH
Confidence 45555553 23322 3566767778875 665544445555543 2333332 2233 333334445
Q ss_pred hcCCcccEEeeCCcc
Q 026913 76 KQGHEVDAFGIGTYL 90 (231)
Q Consensus 76 ~~g~~id~fGvGT~l 90 (231)
+.+.|...++.++..
T Consensus 90 ~~~iP~i~~~~~~~~ 104 (336)
T cd06326 90 EAGVPLVGPFTGASS 104 (336)
T ss_pred HcCCeEEEecCCcHH
Confidence 567777666655443
No 278
>cd01462 VWA_YIEM_type VWA YIEM type: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if
Probab=24.04 E-value=3.3e+02 Score=21.09 Aligned_cols=34 Identities=12% Similarity=0.190 Sum_probs=23.0
Q ss_pred CCeEEEEeCCCCH---HHH---HHHHh-cCCcccEEeeCCc
Q 026913 56 EKMSITASNDLNE---ETL---DALNK-QGHEVDAFGIGTY 89 (231)
Q Consensus 56 ~~v~I~~S~~Lde---~~i---~~l~~-~g~~id~fGvGT~ 89 (231)
..+-|++|+|.+. ..+ ..+.+ .+..+-.||||++
T Consensus 95 ~~~ivliTDG~~~~~~~~~~~~~~~~~~~~~~v~~~~~g~~ 135 (152)
T cd01462 95 KADIVLITDGYEGGVSDELLREVELKRSRVARFVALALGDH 135 (152)
T ss_pred CceEEEECCCCCCCCCHHHHHHHHHHHhcCcEEEEEEecCC
Confidence 4678999999743 222 33333 3578999999984
No 279
>PLN02602 lactate dehydrogenase
Probab=24.01 E-value=1.4e+02 Score=28.03 Aligned_cols=37 Identities=24% Similarity=0.255 Sum_probs=18.5
Q ss_pred CCCCeEEEEeCCCCHHHHHHHHhcCCc-ccEEeeCCcc
Q 026913 54 DFEKMSITASNDLNEETLDALNKQGHE-VDAFGIGTYL 90 (231)
Q Consensus 54 g~~~v~I~~S~~Lde~~i~~l~~~g~~-id~fGvGT~l 90 (231)
+++-+.|++||=.|.-+-.-....|.| .-.||.||.|
T Consensus 145 ~p~~ivivvtNPvdv~t~~~~k~sg~p~~rviG~gt~L 182 (350)
T PLN02602 145 SPDTILLIVSNPVDVLTYVAWKLSGFPANRVIGSGTNL 182 (350)
T ss_pred CCCeEEEEecCchHHHHHHHHHHhCCCHHHEEeecchH
Confidence 444455556655555444444333432 3455666555
No 280
>PLN02446 (5-phosphoribosyl)-5-[(5-phosphoribosylamino)methylideneamino] imidazole-4-carboxamide isomerase
Probab=23.87 E-value=3.3e+02 Score=24.65 Aligned_cols=74 Identities=15% Similarity=0.127 Sum_probs=52.3
Q ss_pred HHHHHHHHHHHhcCCC-ccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEE
Q 026913 6 PNFCAVALALNDLGYK-AVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 6 ~naI~va~~l~~~g~~-~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~f 84 (231)
.+.+.+|+..++.|.+ +.-|=||-|....+ .+.+.+.+. .+.|-+.||+..+.++++.+.|+ +-.
T Consensus 43 ~dP~~~A~~~~~~Ga~~lHvVDLdgg~~~n~--~~i~~i~~~----------~~~vqvGGGIR~e~i~~~l~~Ga--~rV 108 (262)
T PLN02446 43 KSAAEFAEMYKRDGLTGGHVIMLGADDASLA--AALEALRAY----------PGGLQVGGGVNSENAMSYLDAGA--SHV 108 (262)
T ss_pred CCHHHHHHHHHHCCCCEEEEEECCCCCcccH--HHHHHHHhC----------CCCEEEeCCccHHHHHHHHHcCC--CEE
Confidence 3567888888888876 46788887664331 122222222 25899999999999999999995 455
Q ss_pred eeCCccccc
Q 026913 85 GIGTYLVTC 93 (231)
Q Consensus 85 GvGT~l~~~ 93 (231)
=|||..++.
T Consensus 109 iigT~Av~~ 117 (262)
T PLN02446 109 IVTSYVFRD 117 (262)
T ss_pred EEchHHHhC
Confidence 579998884
No 281
>PRK09249 coproporphyrinogen III oxidase; Provisional
Probab=23.82 E-value=3.9e+02 Score=25.53 Aligned_cols=70 Identities=20% Similarity=0.380 Sum_probs=47.1
Q ss_pred CCccEEeeCCCChHHH-HHHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCcccEEeeCCc
Q 026913 20 YKAVGIRLDSGDLAYL-SCEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 20 ~~~~gVRlDSGDl~~l-s~~~r~~ld~~~~~l~~~g~~~v~I~~S-~~Lde~~i~~l~~~g~~id~fGvGT~ 89 (231)
..+..|-+--|.+..+ ..++.++++.+...+++..-..+.|-+. +.++++.+..|.+.|....++||=+.
T Consensus 101 ~~v~~i~~gGGtPs~l~~~~l~~ll~~l~~~~~~~~~~e~tie~np~~lt~e~l~~l~~aG~~risiGvqS~ 172 (453)
T PRK09249 101 RPVSQLHWGGGTPTFLSPEQLRRLMALLREHFNFAPDAEISIEIDPRELDLEMLDALRELGFNRLSLGVQDF 172 (453)
T ss_pred CceEEEEECCcccccCCHHHHHHHHHHHHHhCCCCCCCEEEEEecCCcCCHHHHHHHHHcCCCEEEECCCCC
Confidence 3456677767887766 4557777777766665432224455443 36999999999999976667776554
No 282
>PRK09058 coproporphyrinogen III oxidase; Provisional
Probab=23.77 E-value=3.2e+02 Score=26.23 Aligned_cols=66 Identities=17% Similarity=0.291 Sum_probs=45.9
Q ss_pred ccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCCeEEEEe---CCCCHHHHHHHHhcCCcccEEeeCCc
Q 026913 22 AVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS---NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 22 ~~gVRlDSGDl~~ls-~~~r~~ld~~~~~l~~~g~~~v~I~~S---~~Lde~~i~~l~~~g~~id~fGvGT~ 89 (231)
+.-|=+--|.+..|+ .++.++++.+...+.+.. ++.|-+. +.+|++.+..+.+.|....++||=|.
T Consensus 115 i~~iy~GGGTPs~L~~~~l~~ll~~i~~~~~l~~--~~eitiE~~p~~~t~e~l~~l~~aGvnRiSiGVQSf 184 (449)
T PRK09058 115 IHAVYFGGGTPTALSAEDLARLITALREYLPLAP--DCEITLEGRINGFDDEKADAALDAGANRFSIGVQSF 184 (449)
T ss_pred eeEEEECCCccccCCHHHHHHHHHHHHHhCCCCC--CCEEEEEeCcCcCCHHHHHHHHHcCCCEEEecCCcC
Confidence 344555558887765 346777777666666543 3344444 78999999999999988888888763
No 283
>PF03599 CdhD: CO dehydrogenase/acetyl-CoA synthase delta subunit; InterPro: IPR016041 This entry represents a conserved region predicted to form a TIM alpha/beta barrel, and is found in the delta subunit of a number of CO dehydrogenase/acetyl-CoA synthase enzymes.; PDB: 2H9A_B 2YCL_B 4DJF_E 4DJD_C 4DJE_C.
Probab=23.67 E-value=94 Score=29.80 Aligned_cols=47 Identities=21% Similarity=0.347 Sum_probs=29.1
Q ss_pred CCCccEEeeCCCCh-HHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHh
Q 026913 19 GYKAVGIRLDSGDL-AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNK 76 (231)
Q Consensus 19 g~~~~gVRlDSGDl-~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~ 76 (231)
+..+..||+.|||+ +.+++-+.+..+.. ++-++..+. |.+.+++..+
T Consensus 69 ~~D~Ialr~~S~DPae~fa~~vk~V~~a~----------~~PLIL~~~-D~evl~aale 116 (386)
T PF03599_consen 69 GADMIALRLESGDPAEEFAKAVKKVAEAV----------DVPLILCGC-DPEVLKAALE 116 (386)
T ss_dssp E-SEEEEE-GGGSTHHHHHHHHHHHHHC-----------SSEEEEESS-HHHHHHHHHH
T ss_pred cccEEEEEecCCChHHHHHHHHHHHHHhc----------CCCEEEEeC-CHHHHHHHHH
Confidence 55678999999997 77777777776653 333343333 6666666554
No 284
>PF04392 ABC_sub_bind: ABC transporter substrate binding protein; InterPro: IPR007487 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energize diverse biological systems. ABC transporters are minimally constituted of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These regions can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. This family contains many hypothetical proteins and some ABC transporter substrate binding proteins.; PDB: 3LFT_A 3LKV_A.
Probab=23.65 E-value=1.3e+02 Score=26.54 Aligned_cols=116 Identities=26% Similarity=0.275 Sum_probs=51.5
Q ss_pred HHHHHHH-HHHHhcCCCccEEee---C-CCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc
Q 026913 6 PNFCAVA-LALNDLGYKAVGIRL---D-SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE 80 (231)
Q Consensus 6 ~naI~va-~~l~~~g~~~~gVRl---D-SGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~ 80 (231)
..+++=+ .+|++.|+...-|++ + -||+..+...+++ |.+ .-.+ -|+++|+---..+.+-.....|
T Consensus 14 ~~~~~gf~~~L~~~g~~~~~~~~~~~~a~~d~~~~~~~~~~-l~~--------~~~D-lIi~~gt~aa~~~~~~~~~~iP 83 (294)
T PF04392_consen 14 DDIVRGFKDGLKELGYDEKNVEIEYKNAEGDPEKLRQIARK-LKA--------QKPD-LIIAIGTPAAQALAKHLKDDIP 83 (294)
T ss_dssp HHHHHHHHHHHHHTT--CCCEEEEEEE-TT-HHHHHHHHHH-HCC--------TS-S-EEEEESHHHHHHHHHH-SS-S-
T ss_pred HHHHHHHHHHHHHcCCccccEEEEEecCCCCHHHHHHHHHH-Hhc--------CCCC-EEEEeCcHHHHHHHHhcCCCcE
Confidence 3344333 458888876533333 2 3786555444432 211 2245 4555554333333333222279
Q ss_pred ccEEee----CCcccccCCCC--ccceEEEEeEECCccccccCCCCCCCCCCccceeEeecCC
Q 026913 81 VDAFGI----GTYLVTCYAQA--ALGCVFKLVEINKQPRIKLSEDVSKVSIPCKKRSYRLYGK 137 (231)
Q Consensus 81 id~fGv----GT~l~~~~~~p--~l~~vyKlv~~~g~p~~K~S~~~~K~t~PG~K~v~R~~~~ 137 (231)
+..-|| ++.|+.+...| .+-+|+...-++.+ +.+ -|.-+|..|.|.=+|+.
T Consensus 84 VVf~~V~dp~~~~l~~~~~~~~~nvTGv~~~~~~~~~--l~l----~~~l~P~~k~igvl~~~ 140 (294)
T PF04392_consen 84 VVFCGVSDPVGAGLVDSLDRPGKNVTGVSERPPIEKQ--LEL----IKKLFPDAKRIGVLYDP 140 (294)
T ss_dssp EEEECES-TTTTTS-S-SSS--SSEEEEEE---HHHH--HHH----HHHHSTT--EEEEEEET
T ss_pred EEEEeccChhhhhccccccCCCCCEEEEECCcCHHHH--HHH----HHHhCCCCCEEEEEecC
Confidence 988898 77887776665 55555532222211 111 23346888888777764
No 285
>TIGR03572 WbuZ glycosyl amidation-associated protein WbuZ. This clade of sequences is highly similar to the HisF protein, but generally represents the second HisF homolog in the genome where the other is an authentic HisF observed in the context of a complete histidine biosynthesis operon. The similarity between these WbuZ sequences and true HisFs is such that often the closest match by BLAST of a WbuZ is a HisF. Only by making a multiple sequence alignment is the homology relationship among the WbuZ sequences made apparent. WbuZ genes are invariably observed in the presence of a homolog of the HisH protein (designated WbuY) and a proposed N-acetyl sugar amidotransferase designated in WbuX in E. coli, IfnA in P. aeriginosa and PseA in C. jejuni. Similarly, this trio of genes is invariably found in the context of saccharide biosynthesis loci. It has been shown that the WbuYZ homologs are not essential components of the activity expressed by WbuX, leading to the proposal that these to pr
Probab=23.60 E-value=2.4e+02 Score=24.09 Aligned_cols=72 Identities=19% Similarity=0.168 Sum_probs=43.9
Q ss_pred HHHHHHHHHHhcCCC-ccEEeeCC-----CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCC
Q 026913 7 NFCAVALALNDLGYK-AVGIRLDS-----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGH 79 (231)
Q Consensus 7 naI~va~~l~~~g~~-~~gVRlDS-----GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld-e~~i~~l~~~g~ 79 (231)
+.+++++.+.+.|.+ +.-+=+|. |....+. +++.++ .++.++++||+. .+.+.++.+.|
T Consensus 31 dp~~~a~~~~~~g~~~i~i~dl~~~~~~~~~n~~~~---~~i~~~----------~~~pv~~~ggi~~~~d~~~~~~~G- 96 (232)
T TIGR03572 31 DPVNAARIYNAKGADELIVLDIDASKRGREPLFELI---SNLAEE----------CFMPLTVGGGIRSLEDAKKLLSLG- 96 (232)
T ss_pred CHHHHHHHHHHcCCCEEEEEeCCCcccCCCCCHHHH---HHHHHh----------CCCCEEEECCCCCHHHHHHHHHcC-
Confidence 567888888877755 22333333 3333332 223323 234788888887 67888888777
Q ss_pred cccEEeeCCccccc
Q 026913 80 EVDAFGIGTYLVTC 93 (231)
Q Consensus 80 ~id~fGvGT~l~~~ 93 (231)
++..-+||.+..+
T Consensus 97 -~~~vilg~~~l~~ 109 (232)
T TIGR03572 97 -ADKVSINTAALEN 109 (232)
T ss_pred -CCEEEEChhHhcC
Confidence 4556778887664
No 286
>TIGR00539 hemN_rel putative oxygen-independent coproporphyrinogen III oxidase. Experimentally determined examples of oxygen-independent coproporphyrinogen III oxidase, an enzyme that replaces HemF function under anaerobic conditions, belong to a family of proteins described by the model hemN. This model, hemN_rel, models a closely related protein, shorter at the amino end and lacking the region containing the motif PYRT[SC]YP found in members of the hemN family. Several species, including E. coli, Helicobacter pylori, Aquifex aeolicus, and Chlamydia trachomatis, have members of both this family and the E. coli hemN family. The member of this family from Bacillus subtilis was shown to complement an hemF/hemN double mutant of Salmonella typimurium and to prevent accumulation of coproporphyrinogen III under anaerobic conditions, but the exact role of this protein is still uncertain. It is found in a number of species that do not synthesize heme de novo.
Probab=23.60 E-value=5.5e+02 Score=23.58 Aligned_cols=68 Identities=18% Similarity=0.237 Sum_probs=44.9
Q ss_pred ccEEeeCCCChHHHH-HHHHHHHHHHhHhhCCCCCCCeEEEEe-CCCCHHHHHHHHhcCCcccEEeeCCc
Q 026913 22 AVGIRLDSGDLAYLS-CEARKFFRTIEKEFGVPDFEKMSITAS-NDLNEETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 22 ~~gVRlDSGDl~~ls-~~~r~~ld~~~~~l~~~g~~~v~I~~S-~~Lde~~i~~l~~~g~~id~fGvGT~ 89 (231)
+.-|-+=-|.|..++ ..+.++++.....+++..-..+.|-+. +.+|++.++.|.+.|....++||=|.
T Consensus 52 v~~i~~GGGtPs~l~~~~l~~ll~~i~~~~~~~~~~eitie~np~~lt~e~l~~l~~~Gv~risiGvqS~ 121 (360)
T TIGR00539 52 LESIFIGGGTPNTLSVEAFERLFESIYQHASLSDDCEITTEANPELITAEWCKGLKGAGINRLSLGVQSF 121 (360)
T ss_pred ccEEEeCCCchhcCCHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCCCCHHHHHHHHHcCCCEEEEecccC
Confidence 445666668887764 446667766655565433234455443 66999999999999976667776543
No 287
>PF03932 CutC: CutC family; InterPro: IPR005627 Copper transport in Escherichia coli is mediated by the products of at least six genes, cutA, cutB, cutC, cutD, cutE, and cutF. A mutation in one or more of these genes results in an increased copper sensitivity. Members of this family are between 200 and 300 amino acids in length and are found in both eukaryotes and bacteria.; GO: 0005507 copper ion binding, 0055070 copper ion homeostasis; PDB: 2BDQ_A 3IWP_I 1X8C_B 1X7I_A 1TWD_B.
Probab=23.59 E-value=91 Score=27.05 Aligned_cols=50 Identities=28% Similarity=0.446 Sum_probs=32.6
Q ss_pred cEEeeCCCChHHHHHHHHHHHHHH--hHhhCCCC-----CCCeEEEEeCCCCHHHHHHHHhc
Q 026913 23 VGIRLDSGDLAYLSCEARKFFRTI--EKEFGVPD-----FEKMSITASNDLNEETLDALNKQ 77 (231)
Q Consensus 23 ~gVRlDSGDl~~ls~~~r~~ld~~--~~~l~~~g-----~~~v~I~~S~~Lde~~i~~l~~~ 77 (231)
.=||+=.||..|=..++..+.++. ..++|.+| +++ .|.+|++.+++|.+.
T Consensus 55 vMIRpr~gdF~Ys~~E~~~M~~dI~~~~~~GadG~VfG~L~~-----dg~iD~~~~~~Li~~ 111 (201)
T PF03932_consen 55 VMIRPRGGDFVYSDEEIEIMKEDIRMLRELGADGFVFGALTE-----DGEIDEEALEELIEA 111 (201)
T ss_dssp EE--SSSS-S---HHHHHHHHHHHHHHHHTT-SEEEE--BET-----TSSB-HHHHHHHHHH
T ss_pred EEECCCCCCccCCHHHHHHHHHHHHHHHHcCCCeeEEEeECC-----CCCcCHHHHHHHHHh
Confidence 468999999999999988888887 45567776 233 688999999999874
No 288
>KOG2799 consensus Succinyl-CoA synthetase, beta subunit [Energy production and conversion]
Probab=23.46 E-value=1.5e+02 Score=28.56 Aligned_cols=44 Identities=25% Similarity=0.354 Sum_probs=32.4
Q ss_pred HHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHH
Q 026913 11 VALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEET 70 (231)
Q Consensus 11 va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~ 70 (231)
.+++|. ... ..-+|+-++. +..++.++.. +-++|+.+++||+..
T Consensus 365 aar~l~-~~i-piv~rlqgt~----v~~ak~~i~~----------sgmri~~~deldeaa 408 (434)
T KOG2799|consen 365 AARELE-LNI-PIVVRLQGTR----VEAAKPIINT----------SGMRIRSFDELDEAA 408 (434)
T ss_pred hhhhhh-cCC-CEEEEecCCc----hhhhhhhHhh----------cCceEEechhhhHHh
Confidence 355553 234 4599999998 6677777766 457999999999975
No 289
>COG0393 Uncharacterized conserved protein [Function unknown]
Probab=23.31 E-value=79 Score=25.01 Aligned_cols=20 Identities=30% Similarity=0.464 Sum_probs=13.5
Q ss_pred HHHHHhcCCC-ccEEeeCCCC
Q 026913 12 ALALNDLGYK-AVGIRLDSGD 31 (231)
Q Consensus 12 a~~l~~~g~~-~~gVRlDSGD 31 (231)
..+.+++|-+ ..|||+||..
T Consensus 66 ~~~A~~lGAnAVVgvr~d~~~ 86 (108)
T COG0393 66 VDEAEALGANAVVGVRFDYST 86 (108)
T ss_pred HHHHHHhCCCeEEEEEechhH
Confidence 3444555655 5799999975
No 290
>PLN02898 HMP-P kinase/thiamin-monophosphate pyrophosphorylase
Probab=23.24 E-value=89 Score=30.35 Aligned_cols=39 Identities=10% Similarity=0.195 Sum_probs=32.9
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCc-ccEEeeCCcccccC
Q 026913 56 EKMSITASNDLNEETLDALNKQGHE-VDAFGIGTYLVTCY 94 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~-id~fGvGT~l~~~~ 94 (231)
.++.|++-||++.+.+.++.+.|+. .|+++|++.+.+..
T Consensus 443 ~~~Pv~aiGGI~~~~~~~~~~~G~~~~~gvav~~~i~~~~ 482 (502)
T PLN02898 443 SKLPVVAIGGISASNAASVMESGAPNLKGVAVVSALFDQE 482 (502)
T ss_pred CCCCEEEECCCCHHHHHHHHHcCCCcCceEEEEeHHhcCC
Confidence 3578999999999999999999852 55999999998643
No 291
>TIGR00259 thylakoid_BtpA membrane complex biogenesis protein, BtpA family. Members of this family are found in C. elegans, Synechocystis sp., E. coli, and several of the Archaea. Members in Cyanobacteria have been shown to play a role in protein complex biogenesis, and designated BtpA (biogenesis of thylakoid protein). Homologs in non-photosynthetic species, where thylakoid intracytoplasmic membranes are lacking, are likely to act elsewhere in membrane protein biogenesis.
Probab=23.16 E-value=2e+02 Score=25.94 Aligned_cols=33 Identities=18% Similarity=0.243 Sum_probs=26.3
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCccc
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYLV 91 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l~ 91 (231)
.++-+++++|++++.+.++.+. .|++=|||++=
T Consensus 199 ~~~PvllggGvt~eNv~e~l~~---adGviVgS~~K 231 (257)
T TIGR00259 199 KDTPVLAGSGVNLENVEELLSI---ADGVIVATTIK 231 (257)
T ss_pred CCCeEEEECCCCHHHHHHHHhh---CCEEEECCCcc
Confidence 3557899999999999998875 57777888874
No 292
>cd04732 HisA HisA. Phosphoribosylformimino-5-aminoimidazole carboxamide ribonucleotide (ProFAR) isomerase catalyzes the fourth step in histidine biosynthesis, an isomerisation of the aminoaldose moiety of ProFAR to the aminoketose of PRFAR (N-(5'-phospho-D-1'-ribulosylformimino)-5-amino-1-(5''-phospho-ribosyl)-4-imidazolecarboxamide). In bacteria and archaea, ProFAR isomerase is encoded by the HisA gene.
Probab=23.11 E-value=2.2e+02 Score=24.13 Aligned_cols=72 Identities=21% Similarity=0.147 Sum_probs=43.2
Q ss_pred HHHHHHHHHHhcCCCccE-E---eeC--CCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC-HHHHHHHHhcCC
Q 026913 7 NFCAVALALNDLGYKAVG-I---RLD--SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN-EETLDALNKQGH 79 (231)
Q Consensus 7 naI~va~~l~~~g~~~~g-V---RlD--SGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld-e~~i~~l~~~g~ 79 (231)
+.+++|+++.+.|....- + +.. .|....+.+++++ . -++.+++.||+. .+.++++.+.|
T Consensus 30 dp~~~a~~~~~~g~d~l~v~dl~~~~~~~~~~~~~i~~i~~---~----------~~~pv~~~GgI~~~e~~~~~~~~G- 95 (234)
T cd04732 30 DPVEVAKKWEEAGAKWLHVVDLDGAKGGEPVNLELIEEIVK---A----------VGIPVQVGGGIRSLEDIERLLDLG- 95 (234)
T ss_pred CHHHHHHHHHHcCCCEEEEECCCccccCCCCCHHHHHHHHH---h----------cCCCEEEeCCcCCHHHHHHHHHcC-
Confidence 567788888877754322 2 222 2222333322222 2 135788888865 48888888888
Q ss_pred cccEEeeCCccccc
Q 026913 80 EVDAFGIGTYLVTC 93 (231)
Q Consensus 80 ~id~fGvGT~l~~~ 93 (231)
.|..-||+.+.++
T Consensus 96 -ad~vvigs~~l~d 108 (234)
T cd04732 96 -VSRVIIGTAAVKN 108 (234)
T ss_pred -CCEEEECchHHhC
Confidence 4566789988774
No 293
>KOG1663 consensus O-methyltransferase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=23.07 E-value=2.3e+02 Score=25.46 Aligned_cols=58 Identities=24% Similarity=0.303 Sum_probs=39.3
Q ss_pred HHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCC-eEEEEeCCCCHHHHHHHHhcC
Q 026913 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEK-MSITASNDLNEETLDALNKQG 78 (231)
Q Consensus 7 naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~-v~I~~S~~Lde~~i~~l~~~g 78 (231)
-|+++|.+|-+ +.++..+=+|.=. .+...++.+.| |..+ +.++.+ --.+.+.+|...|
T Consensus 87 SaL~~Alalp~-dGrv~a~eid~~~----~~~~~~~~k~a-------gv~~KI~~i~g--~a~esLd~l~~~~ 145 (237)
T KOG1663|consen 87 SALAVALALPE-DGRVVAIEIDADA----YEIGLELVKLA-------GVDHKITFIEG--PALESLDELLADG 145 (237)
T ss_pred HHHHHHHhcCC-CceEEEEecChHH----HHHhHHHHHhc-------cccceeeeeec--chhhhHHHHHhcC
Confidence 36788888866 5567788888654 33446677776 7655 555554 4557889998765
No 294
>cd05291 HicDH_like L-2-hydroxyisocapronate dehydrogenases and some bacterial L-lactate dehydrogenases. L-2-hydroxyisocapronate dehydrogenase (HicDH) catalyzes the conversion of a variety of 2-oxo carboxylic acids with medium-sized aliphatic or aromatic side chains. This subfamily is composed of HicDHs and some bacterial L-lactate dehydrogenases (LDH). LDHs catalyze the last step of glycolysis in which pyruvate is converted to L-lactate. Bacterial LDHs can be non-allosteric or may be activated by an allosteric effector such as fructose-1,6-bisphosphate. Members of this subfamily with known structures such as the HicDH of Lactobacillus confusus, the non-allosteric LDH of Lactobacillus pentosus, and the allosteric LDH of Bacillus stearothermophilus, show that they exist as homotetramers. The HicDH-like subfamily is part of the NAD(P)-binding Rossmann fold superfamily, which includes a wide variety of protein families including the NAD(P)-binding domains of alcohol dehydrogenases, tyrosine
Probab=22.91 E-value=1.3e+02 Score=27.18 Aligned_cols=56 Identities=23% Similarity=0.285 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCc-ccEEeeCCcc
Q 026913 35 LSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHE-VDAFGIGTYL 90 (231)
Q Consensus 35 ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~-id~fGvGT~l 90 (231)
|..+-.+++.+.+..+.-.+++-+-|++||=.|.-+-.-...-|.| .-.||+||.|
T Consensus 89 ll~~N~~i~~~~~~~i~~~~~~~~vivvsNP~d~~~~~~~~~~g~p~~~v~g~gt~L 145 (306)
T cd05291 89 LLEKNAKIMKSIVPKIKASGFDGIFLVASNPVDVITYVVQKLSGLPKNRVIGTGTSL 145 (306)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCeEEEEecChHHHHHHHHHHHhCcCHHHEeeccchH
Confidence 3333344444444434333555567777776664433333333442 4567777776
No 295
>PRK13685 hypothetical protein; Provisional
Probab=22.88 E-value=1.1e+02 Score=28.00 Aligned_cols=34 Identities=15% Similarity=0.188 Sum_probs=25.6
Q ss_pred CCeEEEEeCCCCH------------HHHHHHHhcCCcccEEeeCCc
Q 026913 56 EKMSITASNDLNE------------ETLDALNKQGHEVDAFGIGTY 89 (231)
Q Consensus 56 ~~v~I~~S~~Lde------------~~i~~l~~~g~~id~fGvGT~ 89 (231)
..+-|++|||.|. ..+..+.+.|.++...|+|+.
T Consensus 194 ~~~IILlTDG~~~~~~~~~~~~~~~~aa~~a~~~gi~i~~Ig~G~~ 239 (326)
T PRK13685 194 PARIVLMSDGKETVPTNPDNPRGAYTAARTAKDQGVPISTISFGTP 239 (326)
T ss_pred CCEEEEEcCCCCCCCCCCCCcccHHHHHHHHHHcCCeEEEEEECCC
Confidence 3567999999874 234556677999999999974
No 296
>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi
Probab=22.72 E-value=4.5e+02 Score=21.90 Aligned_cols=64 Identities=16% Similarity=0.023 Sum_probs=36.5
Q ss_pred HHHHHhcCCCccEEeeCCC-ChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEee
Q 026913 12 ALALNDLGYKAVGIRLDSG-DLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 12 a~~l~~~g~~~~gVRlDSG-Dl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGv 86 (231)
..++++.|+.+.- .++. |.... .++.+.+.. +.-+.-|+++.+++...+..+.+.|.|+..|+-
T Consensus 22 ~~~a~~~g~~~~~--~~~~~~~~~~-~~~i~~~~~--------~~vdgii~~~~~~~~~~~~~~~~~~ipvV~~~~ 86 (268)
T cd06270 22 ESVARKAGKHLII--TAGHHSAEKE-REAIEFLLE--------RRCDALILHSKALSDDELIELAAQVPPLVLINR 86 (268)
T ss_pred HHHHHHCCCEEEE--EeCCCchHHH-HHHHHHHHH--------cCCCEEEEecCCCCHHHHHHHhhCCCCEEEEec
Confidence 3445667887643 2333 32222 223333333 224446666667777678888888988878764
No 297
>PRK08649 inosine 5-monophosphate dehydrogenase; Validated
Probab=22.51 E-value=3.8e+02 Score=25.32 Aligned_cols=68 Identities=18% Similarity=0.234 Sum_probs=43.6
Q ss_pred HHHHHHHHHHhcCCCccEE--ee-C------CCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhc
Q 026913 7 NFCAVALALNDLGYKAVGI--RL-D------SGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQ 77 (231)
Q Consensus 7 naI~va~~l~~~g~~~~gV--Rl-D------SGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~ 77 (231)
++.+.++.|.+.|..+.-| |. | +|+...+ .+...+. ++.|+++|-.+.+...++.+.
T Consensus 142 ~~~e~a~~l~eaGvd~I~vhgrt~~~~h~~~~~~~~~i----~~~ik~~----------~ipVIaG~V~t~e~A~~l~~a 207 (368)
T PRK08649 142 RAQELAPTVVEAGVDLFVIQGTVVSAEHVSKEGEPLNL----KEFIYEL----------DVPVIVGGCVTYTTALHLMRT 207 (368)
T ss_pred CHHHHHHHHHHCCCCEEEEeccchhhhccCCcCCHHHH----HHHHHHC----------CCCEEEeCCCCHHHHHHHHHc
Confidence 5667777777777766555 21 2 2354333 3333332 357888888999999999999
Q ss_pred CCcccEEeeCC
Q 026913 78 GHEVDAFGIGT 88 (231)
Q Consensus 78 g~~id~fGvGT 88 (231)
|+....-|+|.
T Consensus 208 GAD~V~VG~G~ 218 (368)
T PRK08649 208 GAAGVLVGIGP 218 (368)
T ss_pred CCCEEEECCCC
Confidence 98655556664
No 298
>TIGR01756 LDH_protist lactate dehydrogenase. This model represents a family of protist lactate dehydrogenases which have aparrently evolved from a recent protist malate dehydrogenase ancestor. Lactate dehydrogenase converts the hydroxyl at C-2 of lactate to a carbonyl in the product, pyruvate. The preference of this enzyme for NAD or NADP has not been determined. A critical residue in malate dehydrogenase, arginine-91 (T. vaginalis numbering) has been mutated to a leucine, eliminating the positive charge which complemeted the carboxylate in malate which is absent in lactate. Several other more subtle changes are proposed to make the active site smaller to accomadate the less bulky lactate molecule.
Probab=22.50 E-value=1.4e+02 Score=27.42 Aligned_cols=60 Identities=15% Similarity=0.127 Sum_probs=39.0
Q ss_pred HHHHHHHHHHHHHhHhhCCCCCCCe-EEEEeCCCCHHHHHH-HHhcCCcccEEeeCCccccc
Q 026913 34 YLSCEARKFFRTIEKEFGVPDFEKM-SITASNDLNEETLDA-LNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 34 ~ls~~~r~~ld~~~~~l~~~g~~~v-~I~~S~~Lde~~i~~-l~~~g~~id~fGvGT~l~~~ 93 (231)
.|...-.+++++.+.++.-.+++++ -|++||=.|.-+--- ...-|.|-..||.||.|=+.
T Consensus 80 dll~~N~~I~~~i~~~i~~~a~~~~ivivvtNPvDv~t~v~~~~~sg~p~~vig~gt~LDsa 141 (313)
T TIGR01756 80 DLLTKNTPIFKATGEALSEYAKPTVKVLVIGNPVNTNCLVAMLHAPKLSAENFSSLCMLDHN 141 (313)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCeEEEEeCCchHHHHHHHHHHcCCCCHHHEEecccHHHH
Confidence 3444445566666655655566654 778888887766444 34457765599999998663
No 299
>cd01465 vWA_subgroup VWA subgroup: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF). Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if n
Probab=22.44 E-value=2.6e+02 Score=21.80 Aligned_cols=32 Identities=19% Similarity=0.337 Sum_probs=21.7
Q ss_pred CeEEEEeCCCC------HHHHHHH----HhcCCcccEEeeCC
Q 026913 57 KMSITASNDLN------EETLDAL----NKQGHEVDAFGIGT 88 (231)
Q Consensus 57 ~v~I~~S~~Ld------e~~i~~l----~~~g~~id~fGvGT 88 (231)
..-|++|+|.+ .+.+.++ .+.+..+.++|+|.
T Consensus 98 ~~ivl~TDG~~~~~~~~~~~~~~~~~~~~~~~v~i~~i~~g~ 139 (170)
T cd01465 98 NRILLATDGDFNVGETDPDELARLVAQKRESGITLSTLGFGD 139 (170)
T ss_pred eEEEEEeCCCCCCCCCCHHHHHHHHHHhhcCCeEEEEEEeCC
Confidence 44688899985 3444433 34677899999994
No 300
>PRK08318 dihydropyrimidine dehydrogenase subunit B; Validated
Probab=22.43 E-value=3.3e+02 Score=25.73 Aligned_cols=35 Identities=9% Similarity=0.091 Sum_probs=26.1
Q ss_pred CCeEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCcccc
Q 026913 56 EKMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVT 92 (231)
Q Consensus 56 ~~v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~ 92 (231)
.++.|+.+||+. .+.+.++...| .++..|||.+.-
T Consensus 252 ~~ipIig~GGI~s~~da~e~i~aG--A~~Vqi~ta~~~ 287 (420)
T PRK08318 252 RGLPISGIGGIETWRDAAEFILLG--AGTVQVCTAAMQ 287 (420)
T ss_pred CCCCEEeecCcCCHHHHHHHHHhC--CChheeeeeecc
Confidence 367899999985 55666666688 467888888765
No 301
>PF15643 Tox-PL-2: Papain fold toxin 2
Probab=22.40 E-value=1.1e+02 Score=23.89 Aligned_cols=27 Identities=30% Similarity=0.225 Sum_probs=21.9
Q ss_pred hHHHHHHHHHHHhcCCCccEEeeCCCC
Q 026913 5 VPNFCAVALALNDLGYKAVGIRLDSGD 31 (231)
Q Consensus 5 v~naI~va~~l~~~g~~~~gVRlDSGD 31 (231)
++-|.++.+.|++.|.+-+-||++||-
T Consensus 22 ~~cA~Al~~~L~~~gI~Gk~i~l~T~~ 48 (100)
T PF15643_consen 22 VECASALKQFLKQAGIPGKIIRLYTGY 48 (100)
T ss_pred HHHHHHHHHHHHHCCCCceEEEEEecC
Confidence 355777888888899998999999973
No 302
>cd06578 HemD Uroporphyrinogen-III synthase (HemD) catalyzes the asymmetrical cyclization of tetrapyrrole (linear) to uroporphyrinogen-III, the fourth step in the biosynthesis of heme. This ubiquitous enzyme is present in eukaryotes, bacteria and archaea. Mutations in the human uroporphyrinogen-III synthase gene cause congenital erythropoietic porphyria, a recessive inborn error of metabolism also known as Gunther disease.
Probab=22.39 E-value=2.9e+02 Score=22.72 Aligned_cols=28 Identities=29% Similarity=0.157 Sum_probs=14.1
Q ss_pred HHHHHhcCCCccEEeeCCCChHHHHHHHH
Q 026913 12 ALALNDLGYKAVGIRLDSGDLAYLSCEAR 40 (231)
Q Consensus 12 a~~l~~~g~~~~gVRlDSGDl~~ls~~~r 40 (231)
+.+|++.|.....+ .++++...|.+.+.
T Consensus 89 a~~l~~~g~~~~~~-~~~~~~~~L~~~i~ 116 (239)
T cd06578 89 AEALREAGLTADFV-PEEGDSEGLLELLE 116 (239)
T ss_pred HHHHHHcCCCceeC-CCccCHHHHHHHHH
Confidence 44556666554333 46666544444433
No 303
>COG4937 Predicted regulatory domain of prephenate dehydrogenase [Translation, ribosomal structure and biogenesis]
Probab=22.34 E-value=83 Score=26.38 Aligned_cols=47 Identities=17% Similarity=0.213 Sum_probs=36.4
Q ss_pred CCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHH
Q 026913 19 GYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALN 75 (231)
Q Consensus 19 g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~ 75 (231)
.+++.-||+=|+| +|.+--++.|+. -.-++.++++.|.|++.|..+.
T Consensus 58 Kfki~nvrvlse~--ELr~wk~e~L~~--------~v~DvSvlf~~~vDpEvil~av 104 (171)
T COG4937 58 KFKILNVRVLSED--ELRKWKKEHLEK--------KVIDVSVLFKKDVDPEVILNAV 104 (171)
T ss_pred EEEEeEEEEccHH--HHHHHHHHhhhe--------EEEEEEEEecCCCCHHHHHhHH
Confidence 3556788888887 555556667766 4678999999999999999854
No 304
>PF02581 TMP-TENI: Thiamine monophosphate synthase/TENI; InterPro: IPR003733 Thiamine monophosphate synthase (TMP) (2.5.1.3 from EC) catalyzes the substitution of the pyrophosphate of 2-methyl-4-amino-5- hydroxymethylpyrimidine pyrophosphate by 4-methyl-5- (beta-hydroxyethyl)thiazole phosphate to yield thiamine phosphate in the thiamine biosynthesis pathway []. TENI, a protein from Bacillus subtilis that regulates the production of several extracellular enzymes by reducing alkaline protease production belongs to this group [].; GO: 0004789 thiamine-phosphate diphosphorylase activity, 0009228 thiamine biosynthetic process; PDB: 3NL5_A 3NL2_A 3NM1_A 3NM3_C 3NL6_B 3NL3_A 3CEU_A 3O63_B 3QH2_C 1YAD_D ....
Probab=22.13 E-value=43 Score=27.73 Aligned_cols=28 Identities=18% Similarity=0.398 Sum_probs=20.6
Q ss_pred CeEEEEeCCCCHHHHHHHHhcCCcccEEee
Q 026913 57 KMSITASNDLNEETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 57 ~v~I~~S~~Lde~~i~~l~~~g~~id~fGv 86 (231)
++.|++-||+|++.+.++.+.|+ +++.+
T Consensus 149 ~~pv~AlGGI~~~~i~~l~~~Ga--~gvAv 176 (180)
T PF02581_consen 149 PIPVYALGGITPENIPELREAGA--DGVAV 176 (180)
T ss_dssp SSCEEEESS--TTTHHHHHHTT---SEEEE
T ss_pred CCCEEEEcCCCHHHHHHHHHcCC--CEEEE
Confidence 46899999999999999999884 45444
No 305
>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.
Probab=22.11 E-value=4.6e+02 Score=21.82 Aligned_cols=64 Identities=17% Similarity=0.111 Sum_probs=36.1
Q ss_pred HHHHHhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCC--CCHHHHHHHHhcCCcccEEee
Q 026913 12 ALALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASND--LNEETLDALNKQGHEVDAFGI 86 (231)
Q Consensus 12 a~~l~~~g~~~~gVRlDS-GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~--Lde~~i~~l~~~g~~id~fGv 86 (231)
..++++.|+.+.- .|| +|+......++.++.. +. +.-|+.+.+ .....+.++.+.|.|+..++.
T Consensus 22 ~~~~~~~g~~~~~--~~~~~~~~~~~~~l~~~~~~--------~v-dgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~ 88 (273)
T cd06305 22 KAEAEALGGDLRV--YDAGGDDAKQADQIDQAIAQ--------KV-DAIIIQHGRAEVLKPWVKRALDAGIPVVAFDV 88 (273)
T ss_pred HHHHHHcCCEEEE--ECCCCCHHHHHHHHHHHHHc--------CC-CEEEEecCChhhhHHHHHHHHHcCCCEEEecC
Confidence 4556777877633 455 4665554444444433 33 434454432 234567888888888766643
No 306
>cd03466 Nitrogenase_NifN_2 Nitrogenase_nifN_2: A subgroup of the NifN subunit of the NifEN complex: NifN forms an alpha2beta2 tetramer with NifE. NifN and nifE are structurally homologous to nitrogenase MoFe protein beta and alpha subunits respectively. NifEN participates in the synthesis of the iron-molybdenum cofactor (FeMoco) of the MoFe protein. NifB-co (an iron and sulfur containing precursor of the FeMoco) from NifB is transferred to the NifEN complex where it is further processed to FeMoco. The nifEN bound precursor of FeMoco has been identified as a molybdenum-free, iron- and sulfur- containing analog of FeMoco. It has been suggested that this nifEN bound precursor also acts as a cofactor precursor in nitrogenase systems which require a cofactor other than FeMoco: i.e. iron-vanadium cofactor (FeVco) or iron only cofactor (FeFeco). This group also contains the Clostidium fused NifN-NifB protein.
Probab=22.01 E-value=5.2e+02 Score=24.56 Aligned_cols=62 Identities=13% Similarity=0.018 Sum_probs=37.1
Q ss_pred HHHHHHHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC
Q 026913 7 NFCAVALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGH 79 (231)
Q Consensus 7 naI~va~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~ 79 (231)
.++.+++.|.+.|..+.+|..|+++. .+...+++++.+. + . .+++.+.-|.+.+.++.++..
T Consensus 311 ~~~~l~~~L~elG~~~~~v~~~~~~~-~~~~~l~~~~~~~-------~-~--~~~v~~~~d~~e~~~~l~~~~ 372 (429)
T cd03466 311 FVVAITRFVLENGMVPVLIATGSESK-KLKEKLEEDLKEY-------V-E--KCVILDGADFFDIESYAKELK 372 (429)
T ss_pred HHHHHHHHHHHCCCEEEEEEeCCCCh-HHHHHHHHHHHhc-------C-C--ceEEEeCCCHHHHHHHHHhcC
Confidence 45567777888888888888877653 2222233333331 1 1 344555667888888776543
No 307
>cd00758 MoCF_BD MoCF_BD: molybdenum cofactor (MoCF) binding domain (BD). This domain is found a variety of proteins involved in biosynthesis of molybdopterin cofactor, like MoaB, MogA, and MoeA. The domain is presumed to bind molybdopterin.
Probab=21.98 E-value=3.4e+02 Score=21.17 Aligned_cols=10 Identities=10% Similarity=0.514 Sum_probs=5.0
Q ss_pred CCccceeEee
Q 026913 125 IPCKKRSYRL 134 (231)
Q Consensus 125 ~PG~K~v~R~ 134 (231)
.||...+.-.
T Consensus 96 ~pg~~~~~~~ 105 (133)
T cd00758 96 APGSRTAFGI 105 (133)
T ss_pred cCCCceEEEE
Confidence 4555555444
No 308
>TIGR03151 enACPred_II putative enoyl-(acyl-carrier-protein) reductase II. This oxidoreductase of the 2-nitropropane dioxygenase family (pfam03060) is commonly found in apparent operons with genes involved in fatty acid biosynthesis. Furthermore, this genomic context generally includes the fabG 3-oxoacyl-[ACP] reductase and lacks the fabI enoyl-[ACP] reductase.
Probab=21.79 E-value=1.1e+02 Score=27.93 Aligned_cols=38 Identities=16% Similarity=0.257 Sum_probs=30.1
Q ss_pred CeEEEEeCCCC-HHHHHHHHhcCCcccEEeeCCcccccCCC
Q 026913 57 KMSITASNDLN-EETLDALNKQGHEVDAFGIGTYLVTCYAQ 96 (231)
Q Consensus 57 ~v~I~~S~~Ld-e~~i~~l~~~g~~id~fGvGT~l~~~~~~ 96 (231)
++.|+++||+. .+.+.+....| .++.-|||.+..+...
T Consensus 161 ~iPviaaGGI~~~~~~~~al~~G--A~gV~iGt~f~~t~Es 199 (307)
T TIGR03151 161 SIPVIAAGGIADGRGMAAAFALG--AEAVQMGTRFLCAKEC 199 (307)
T ss_pred CCCEEEECCCCCHHHHHHHHHcC--CCEeecchHHhccccc
Confidence 36799999995 55588877788 4789999999887654
No 309
>cd00553 NAD_synthase NAD+ synthase is a homodimer, which catalyzes the final step in de novo nicotinamide adenine dinucleotide (NAD+) biosynthesis, an amide transfer from either ammonia or glutamine to nicotinic acid adenine dinucleotide (NaAD). The conversion of NaAD to NAD+ occurs via an NAD-adenylate intermediate and requires ATP and Mg2+. The intemediate is subsequently cleaved into NAD+ and AMP. In many prokaryotes, such as E. coli , NAD synthetase consists of a single domain and is strictly ammonia dependent. In contrast, eukaryotes and other prokaryotes have an additional N-terminal amidohydrolase domain that prefer glutamine, Interestingly, NAD+ synthases in these prokaryotes, can also utilize ammonia as an amide source .
Probab=21.66 E-value=1.4e+02 Score=25.96 Aligned_cols=48 Identities=19% Similarity=0.259 Sum_probs=34.0
Q ss_pred HHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhc--C-CcccEEeeCCcc
Q 026913 36 SCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQ--G-HEVDAFGIGTYL 90 (231)
Q Consensus 36 s~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~--g-~~id~fGvGT~l 90 (231)
+.-+|+.+.+. |...+-|.+|||+|=-.+..+..+ | ..+.+|-+.+..
T Consensus 11 ~~~l~~~~~~~-------~~~~vvv~lSGGiDSs~~a~la~~~~~~~~v~~~~~~~~~ 61 (248)
T cd00553 11 VLFLRDYLRKS-------GFKGVVLGLSGGIDSALVAALAVRALGRENVLALFMPSRY 61 (248)
T ss_pred HHHHHHHHHHh-------CCCCEEEeCCCcHHHHHHHHHHHHHhCcccEEEEECCCCC
Confidence 33355555554 788899999999999999988753 3 346666666553
No 310
>TIGR00343 pyridoxal 5'-phosphate synthase, synthase subunit Pdx1. This protein had been believed to be a singlet oxygen resistance protein. Subsequent work showed that it is a protein of pyridoxine (vitamin B6) biosynthesis, and that pyridoxine quenches the highly toxic singlet form of oxygen produced by light in the presence of certain chemicals.
Probab=21.59 E-value=2.1e+02 Score=26.45 Aligned_cols=35 Identities=11% Similarity=0.241 Sum_probs=29.1
Q ss_pred eEEE--EeCCC-CHHHHHHHHhcCCcccEEeeCCcccccC
Q 026913 58 MSIT--ASNDL-NEETLDALNKQGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 58 v~I~--~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~~ 94 (231)
+.|+ +-||+ +++.+..+.+.| .+++-||+.+..+.
T Consensus 198 iPVV~fAiGGI~TPedAa~~melG--AdGVaVGSaI~ks~ 235 (287)
T TIGR00343 198 LPVVNFAAGGVATPADAALMMQLG--ADGVFVGSGIFKSS 235 (287)
T ss_pred CCEEEeccCCCCCHHHHHHHHHcC--CCEEEEhHHhhcCC
Confidence 4565 89999 999999999988 57888999998654
No 311
>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems. Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Probab=21.52 E-value=4.1e+02 Score=22.31 Aligned_cols=64 Identities=16% Similarity=0.076 Sum_probs=34.9
Q ss_pred HHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC--HHHHHHHHhcCCcccEEe
Q 026913 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (231)
Q Consensus 13 ~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld--e~~i~~l~~~g~~id~fG 85 (231)
.++++.|+.+.-+..|..|.......++.++.. +. +.-|+.+.+.+ ...+..+.++|.|+..++
T Consensus 24 ~~~~~~g~~v~~~~~~~~~~~~~~~~i~~l~~~--------~v-dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~ 89 (271)
T cd06312 24 DAAKDLGVDVEYRGPETFDVADMARLIEAAIAA--------KP-DGIVVTIPDPDALDPAIKRAVAAGIPVISFN 89 (271)
T ss_pred HHHHHhCCEEEEECCCCCCHHHHHHHHHHHHHh--------CC-CEEEEeCCChHHhHHHHHHHHHCCCeEEEeC
Confidence 334556777644444443665555555554444 33 43455553333 345677777787776664
No 312
>CHL00024 psbI photosystem II protein I
Probab=21.48 E-value=54 Score=20.93 Aligned_cols=13 Identities=38% Similarity=0.570 Sum_probs=9.2
Q ss_pred cCCCCCCCCCCccce
Q 026913 116 LSEDVSKVSIPCKKR 130 (231)
Q Consensus 116 ~S~~~~K~t~PG~K~ 130 (231)
+|+|++. +||+|+
T Consensus 24 lsnDp~R--nP~rk~ 36 (36)
T CHL00024 24 LSNDPGR--NPGRKE 36 (36)
T ss_pred cCCCCCC--CCCCCC
Confidence 5777765 788873
No 313
>cd01476 VWA_integrin_invertebrates VWA_integrin (invertebrates): Integrins are a family of cell surface receptors that have diverse functions in cell-cell and cell-extracellular matrix interactions. Because of their involvement in many biologically important adhesion processes, integrins are conserved across a wide range of multicellular animals. Integrins from invertebrates have been identified from six phyla. There are no data to date to suggest any immunological functions for the invertebrate integrins. The members of this sub-group have the conserved MIDAS motif that is charateristic of this domain suggesting the involvement of the integrins in the recognition and binding of multi-ligands.
Probab=21.48 E-value=3.7e+02 Score=21.01 Aligned_cols=36 Identities=17% Similarity=0.197 Sum_probs=22.2
Q ss_pred CCCCeEEEEeCCCCH----HHHHHHHh-cCCcccEEeeCCc
Q 026913 54 DFEKMSITASNDLNE----ETLDALNK-QGHEVDAFGIGTY 89 (231)
Q Consensus 54 g~~~v~I~~S~~Lde----~~i~~l~~-~g~~id~fGvGT~ 89 (231)
+..++-|++|+|-+- .....+.+ .|..+-++|+|..
T Consensus 102 ~~~~~villTDG~~~~~~~~~~~~l~~~~~v~v~~vg~g~~ 142 (163)
T cd01476 102 GIPKVVVVLTDGRSHDDPEKQARILRAVPNIETFAVGTGDP 142 (163)
T ss_pred CCCeEEEEECCCCCCCchHHHHHHHhhcCCCEEEEEECCCc
Confidence 455788999988552 23455555 5655666666643
No 314
>PLN00112 malate dehydrogenase (NADP); Provisional
Probab=21.47 E-value=2.1e+02 Score=27.82 Aligned_cols=60 Identities=20% Similarity=0.099 Sum_probs=40.3
Q ss_pred HHHHHHHHHHHHHHhHhhCC-CCCCCeEEEEeCCCCHHHHHHHHhcCC-cccEEeeCCcccc
Q 026913 33 AYLSCEARKFFRTIEKEFGV-PDFEKMSITASNDLNEETLDALNKQGH-EVDAFGIGTYLVT 92 (231)
Q Consensus 33 ~~ls~~~r~~ld~~~~~l~~-~g~~~v~I~~S~~Lde~~i~~l~~~g~-~id~fGvGT~l~~ 92 (231)
..|...-.+++.+.+..+.- .+++-+-|++||=.|.-+-.-....|. +.-.||.||.|-+
T Consensus 195 ~dLl~~N~~I~k~i~~~I~~~a~p~~ivIVVsNPvDv~t~v~~k~sg~~~~rViGtgT~LDs 256 (444)
T PLN00112 195 ADLLDINGQIFAEQGKALNEVASRNVKVIVVGNPCNTNALICLKNAPNIPAKNFHALTRLDE 256 (444)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCCCeEEEEcCCcHHHHHHHHHHHcCCCCcceEEeeccHHH
Confidence 33444445566666555655 477778888888888777666655554 5678999998865
No 315
>PRK08673 3-deoxy-7-phosphoheptulonate synthase; Reviewed
Probab=21.46 E-value=2.6e+02 Score=26.15 Aligned_cols=75 Identities=20% Similarity=0.316 Sum_probs=52.8
Q ss_pred HHHHHHHHHHHhcCCCccEEee---------CCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHh
Q 026913 6 PNFCAVALALNDLGYKAVGIRL---------DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNK 76 (231)
Q Consensus 6 ~naI~va~~l~~~g~~~~gVRl---------DSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~ 76 (231)
..++++|+.+++.|.++ +|- .| ..-+..+--++|.+++.++|++ ++|.=+|++.+..+.+
T Consensus 107 e~~~~~A~~lk~~ga~~--~r~~~fKpRTsp~s--f~G~g~~gL~~L~~~~~~~Gl~-------v~tev~d~~~~~~l~~ 175 (335)
T PRK08673 107 EQILEIARAVKEAGAQI--LRGGAFKPRTSPYS--FQGLGEEGLKLLAEAREETGLP-------IVTEVMDPRDVELVAE 175 (335)
T ss_pred HHHHHHHHHHHHhchhh--ccCcEecCCCCCcc--cccccHHHHHHHHHHHHHcCCc-------EEEeeCCHHHHHHHHH
Confidence 45778899998877653 332 22 1111244455777877777765 5677899999999987
Q ss_pred cCCcccEEeeCCcccccC
Q 026913 77 QGHEVDAFGIGTYLVTCY 94 (231)
Q Consensus 77 ~g~~id~fGvGT~l~~~~ 94 (231)
. +|.+=||+..+++.
T Consensus 176 ~---vd~lqIgAr~~~N~ 190 (335)
T PRK08673 176 Y---VDILQIGARNMQNF 190 (335)
T ss_pred h---CCeEEECcccccCH
Confidence 6 78999999998864
No 316
>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.
Probab=21.43 E-value=3.9e+02 Score=22.41 Aligned_cols=65 Identities=15% Similarity=0.056 Sum_probs=34.9
Q ss_pred HHHHHhcCCCccEEeeCC-CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCC--HHHHHHHHhcCCcccEEe
Q 026913 12 ALALNDLGYKAVGIRLDS-GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLN--EETLDALNKQGHEVDAFG 85 (231)
Q Consensus 12 a~~l~~~g~~~~gVRlDS-GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Ld--e~~i~~l~~~g~~id~fG 85 (231)
..++++.|+.+.-+..|+ +|.......++.+++. +. +.-|+.+.+-+ ...+..+.+.|.|+..++
T Consensus 22 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~i~~l~~~--------~v-dgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~ 89 (275)
T cd06320 22 ENEAKKLGVSVDIQAAPSEGDQQGQLSIAENMINK--------GY-KGLLFSPISDVNLVPAVERAKKKGIPVVNVN 89 (275)
T ss_pred HHHHHHhCCeEEEEccCCCCCHHHHHHHHHHHHHh--------CC-CEEEECCCChHHhHHHHHHHHHCCCeEEEEC
Confidence 345666788876555566 4554443334444433 32 32344432211 245677777888876664
No 317
>PF08134 cIII: cIII protein family; InterPro: IPR012995 This family consists of the CIII family of regulatory proteins. The lambda CIII protein has 54 amino acids and it forms an amphipathic helix within its amino acid sequence. Lambda CIII stabilises the lambda CII protein and the host sigma factor 32, responsible for transcribing genes of the heat shock regulon [].
Probab=21.23 E-value=1.2e+02 Score=19.93 Aligned_cols=18 Identities=28% Similarity=0.438 Sum_probs=14.8
Q ss_pred HHHHHHHHHHHHHHhHhh
Q 026913 33 AYLSCEARKFFRTIEKEF 50 (231)
Q Consensus 33 ~~ls~~~r~~ld~~~~~l 50 (231)
.+||+++|++.+.+..+|
T Consensus 20 SELskr~rrLIRaa~k~l 37 (44)
T PF08134_consen 20 SELSKRIRRLIRAARKQL 37 (44)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 679999999999886654
No 318
>COG2390 DeoR Transcriptional regulator, contains sigma factor-related N-terminal domain [Transcription]
Probab=21.23 E-value=2e+02 Score=26.78 Aligned_cols=63 Identities=17% Similarity=0.219 Sum_probs=40.8
Q ss_pred ccEEeeCCCCh--HHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHH-HHhc----------CCcccEEeeCC
Q 026913 22 AVGIRLDSGDL--AYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDA-LNKQ----------GHEVDAFGIGT 88 (231)
Q Consensus 22 ~~gVRlDSGDl--~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~-l~~~----------g~~id~fGvGT 88 (231)
+.=|++++... .+|..+.++.| |++++-|+-+++.|+..+.+ +-.. ...+.+.|+|+
T Consensus 55 iV~I~i~~~~~~~~~Le~~L~~~f----------gL~~a~VVp~~~~~~~~~~~~lg~aaA~~l~~~l~~gdvigV~wGr 124 (321)
T COG2390 55 IVKISINSPVEGCLELEQQLKERF----------GLKEAIVVPSDSDADDSILRRLGRAAAQYLESLLKPGDVIGVGWGR 124 (321)
T ss_pred eEEEEeCCCCcchHHHHHHHHHhc----------CCCeEEEEcCCCCCchHHHHHHHHHHHHHHHHhCCCCCEEEEeccH
Confidence 56889996442 33445555555 88998888888777666655 3321 22377888888
Q ss_pred cccccC
Q 026913 89 YLVTCY 94 (231)
Q Consensus 89 ~l~~~~ 94 (231)
.+....
T Consensus 125 Tv~a~~ 130 (321)
T COG2390 125 TLSAVV 130 (321)
T ss_pred HHHHHH
Confidence 887643
No 319
>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Probab=21.22 E-value=4.9e+02 Score=21.68 Aligned_cols=66 Identities=14% Similarity=0.057 Sum_probs=37.0
Q ss_pred HHHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeC
Q 026913 12 ALALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 12 a~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvG 87 (231)
..++++.|+.+ -+.....|.... ....+.+... +. +.-|+.+-..+...+.++.+.+.|+..|+..
T Consensus 22 ~~~~~~~~~~~-~~~~~~~~~~~~-~~~i~~l~~~-------~~-dgiii~~~~~~~~~~~~~~~~~iPvv~~~~~ 87 (265)
T cd06285 22 EEAAAERGYST-FVANTGDNPDAQ-RRAIEMLLDR-------RV-DGLILGDARSDDHFLDELTRRGVPFVLVLRH 87 (265)
T ss_pred HHHHHHCCCEE-EEEeCCCCHHHH-HHHHHHHHHc-------CC-CEEEEecCCCChHHHHHHHHcCCCEEEEccC
Confidence 45566778876 243333354332 2333334332 33 4345555455666788888888898888754
No 320
>TIGR03682 arCOG04112 arCOG04112 universal archaeal diphthamide biosynthesis domain protein. This family of proteins has been observed universally in archaeal genomes and contains a match to the TIGR00322 model for the diphthamide biosynthesis protein 2-related domain.
Probab=21.15 E-value=1.5e+02 Score=27.28 Aligned_cols=49 Identities=20% Similarity=0.377 Sum_probs=32.7
Q ss_pred ccEEeeCC----CChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEE
Q 026913 22 AVGIRLDS----GDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAF 84 (231)
Q Consensus 22 ~~gVRlDS----GDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~f 84 (231)
-.||=+.| |. ..+.+++++++.++ |.+. .+++.|.+|++++..| ++|+|
T Consensus 214 ~vGIlvgTl~~q~~-~~~~~~l~~ll~~~-------gkk~-y~i~~~~in~~kL~nf-----~iD~f 266 (308)
T TIGR03682 214 KFGILVSTKKGQRR-PELAEELKKLLEEL-------GKEA-LLILLDNISPDQLRNL-----DFDAY 266 (308)
T ss_pred eEEEEEEccCcCCC-HHHHHHHHHHHHHc-------CCeE-EEEEeCCCCHHHHhcC-----CcCEE
Confidence 34655555 33 34566677777776 6544 8888889999888766 16777
No 321
>PF10649 DUF2478: Protein of unknown function (DUF2478); InterPro: IPR018912 This is a family of hypothetical bacterial proteins encoded in the vicinity of molybdenum ABC transporter gene-products MobA, MobB and MobC. However the function could not be confirmed.
Probab=21.05 E-value=69 Score=26.87 Aligned_cols=28 Identities=39% Similarity=0.495 Sum_probs=23.5
Q ss_pred cCCCccEEeeCCCChHHHHHHHHHHHHH
Q 026913 18 LGYKAVGIRLDSGDLAYLSCEARKFFRT 45 (231)
Q Consensus 18 ~g~~~~gVRlDSGDl~~ls~~~r~~ld~ 45 (231)
+|..-.|+|+|++-|+.-+..+++.|++
T Consensus 65 LG~gs~gCrLD~~~La~A~~~l~~al~~ 92 (159)
T PF10649_consen 65 LGPGSRGCRLDPGALAEASAALRRALAE 92 (159)
T ss_pred cCCCCcccccCHHHHHHHHHHHHHHHhc
Confidence 4555678899999999999999999988
No 322
>PRK13397 3-deoxy-7-phosphoheptulonate synthase; Provisional
Probab=21.04 E-value=3.2e+02 Score=24.54 Aligned_cols=77 Identities=18% Similarity=0.340 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhcCCCccEEee-------CCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcC
Q 026913 6 PNFCAVALALNDLGYKAVGIRL-------DSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQG 78 (231)
Q Consensus 6 ~naI~va~~l~~~g~~~~gVRl-------DSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g 78 (231)
....++|+++++.|..+ +|= --....-+..+--++|.+++.++|++ ++|.-.|++.+..+.+.
T Consensus 29 e~~~~~a~~~~~~g~~~--~r~g~~kpRts~~sf~G~G~~gl~~L~~~~~~~Gl~-------~~Tev~d~~~v~~~~e~- 98 (250)
T PRK13397 29 DHIRLAASSAKKLGYNY--FRGGAYKPRTSAASFQGLGLQGIRYLHEVCQEFGLL-------SVSEIMSERQLEEAYDY- 98 (250)
T ss_pred HHHHHHHHHHHHcCCCE--EEecccCCCCCCcccCCCCHHHHHHHHHHHHHcCCC-------EEEeeCCHHHHHHHHhc-
Confidence 35678888888877543 332 22222223345667888887778765 56778999999999873
Q ss_pred CcccEEeeCCcccccC
Q 026913 79 HEVDAFGIGTYLVTCY 94 (231)
Q Consensus 79 ~~id~fGvGT~l~~~~ 94 (231)
+|.+=||+..++..
T Consensus 99 --vdilqIgs~~~~n~ 112 (250)
T PRK13397 99 --LDVIQVGARNMQNF 112 (250)
T ss_pred --CCEEEECcccccCH
Confidence 89999999998853
No 323
>COG0367 AsnB Asparagine synthase (glutamine-hydrolyzing) [Amino acid transport and metabolism]
Probab=20.98 E-value=2.6e+02 Score=27.76 Aligned_cols=61 Identities=13% Similarity=0.138 Sum_probs=43.2
Q ss_pred CChHHHHHHHHHHHHHH-hHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCC--c-ccEEeeCCcccc
Q 026913 30 GDLAYLSCEARKFFRTI-EKEFGVPDFEKMSITASNDLNEETLDALNKQGH--E-VDAFGIGTYLVT 92 (231)
Q Consensus 30 GDl~~ls~~~r~~ld~~-~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~--~-id~fGvGT~l~~ 92 (231)
.+..+++..+++.|.++ ..++- .-..|-++.|||+|--.|..+...-. . ...|=||..=..
T Consensus 206 ~~~~~~~~~l~~~l~~sV~~r~~--advpvg~~lSGGlDSS~Iaa~a~~~~~~~~~~~fsvg~~~~~ 270 (542)
T COG0367 206 ESADELAEHLRSLLEDAVKRRLV--ADVPVGVFLSGGLDSSLIAAIAAEELGKEGKTTFTVGFEDSD 270 (542)
T ss_pred cchHHHHHHHHHHHHHHHHHHhc--cCCcEEEEeCCCccHHHHHHHHHHhccccceeeeEeecCCCC
Confidence 46778888899999887 55552 22458999999999999999986422 1 123667655443
No 324
>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs. Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Probab=20.95 E-value=4.9e+02 Score=21.65 Aligned_cols=65 Identities=15% Similarity=0.053 Sum_probs=35.5
Q ss_pred HHHHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeC
Q 026913 13 LALNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 13 ~~l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvG 87 (231)
+++++.|+.+.-...+ +|.......++. +... +. +.-|+.+.+.+...+.++.++|.|+..|+-.
T Consensus 23 ~~~~~~g~~~~~~~~~-~~~~~~~~~i~~-l~~~-------~v-dgiii~~~~~~~~~~~~~~~~~ipvV~~~~~ 87 (264)
T cd06274 23 ALARERGYQLLIACSD-DDPETERETVET-LIAR-------QV-DALIVAGSLPPDDPYYLCQKAGLPVVALDRP 87 (264)
T ss_pred HHHHHCCCEEEEEeCC-CCHHHHHHHHHH-HHHc-------CC-CEEEEcCCCCchHHHHHHHhcCCCEEEecCc
Confidence 4466778776443332 354434333333 3331 33 4355555555655578888888887777544
No 325
>KOG1643 consensus Triosephosphate isomerase [Carbohydrate transport and metabolism]
Probab=20.86 E-value=1.2e+02 Score=27.10 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=29.0
Q ss_pred CCeEEEEeCCCCHHHHHHHHhcCCcccEEeeCCcc
Q 026913 56 EKMSITASNDLNEETLDALNKQGHEVDAFGIGTYL 90 (231)
Q Consensus 56 ~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvGT~l 90 (231)
..++|+..|+.+--...+|.++ ..||+|=||+.=
T Consensus 201 ~~~RIiYGGSV~g~N~~el~~~-~diDGFLVGGaS 234 (247)
T KOG1643|consen 201 SSTRIIYGGSVNGGNCKELAKK-PDIDGFLVGGAS 234 (247)
T ss_pred hceEEEeccccccccHHHhccc-ccccceEEcCcc
Confidence 4579999999999999999865 679999998653
No 326
>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.
Probab=20.64 E-value=4.7e+02 Score=21.24 Aligned_cols=63 Identities=17% Similarity=0.150 Sum_probs=35.0
Q ss_pred HHhcCCCccEEeeCCCChHHHHHHHHHHHHHHhHhhCCCCCCCeEEEEeCCCCHHHHHHHHhcCCcccEEeeC
Q 026913 15 LNDLGYKAVGIRLDSGDLAYLSCEARKFFRTIEKEFGVPDFEKMSITASNDLNEETLDALNKQGHEVDAFGIG 87 (231)
Q Consensus 15 l~~~g~~~~gVRlDSGDl~~ls~~~r~~ld~~~~~l~~~g~~~v~I~~S~~Lde~~i~~l~~~g~~id~fGvG 87 (231)
+++.|+.+. ++.+..|+......++..... + -+.-|+.+.+-+...+..+.++|.|+.+++..
T Consensus 25 ~~~~g~~~~-~~~~~~~~~~~~~~~~~~~~~--------~-~d~iii~~~~~~~~~~~~~~~~~ipvv~~~~~ 87 (264)
T cd06267 25 AREAGYSVL-LCNSDEDPEKEREALELLLSR--------R-VDGIILAPSRLDDELLEELAALGIPVVLVDRP 87 (264)
T ss_pred HHHcCCEEE-EEcCCCCHHHHHHHHHHHHHc--------C-cCEEEEecCCcchHHHHHHHHcCCCEEEeccc
Confidence 455677763 566666764444444443322 3 34344444433333377788888887777654
No 327
>cd02067 B12-binding B12 binding domain (B12-BD). This domain binds different cobalamid derivates, like B12 (adenosylcobamide) or methylcobalamin or methyl-Co(III) 5-hydroxybenzimidazolylcobamide, it is found in several enzymes, such as glutamate mutase, methionine synthase and methylmalonyl-CoA mutase. Cobalamin undergoes a conformational change on binding the protein; the dimethylbenzimidazole group, which is coordinated to the cobalt in the free cofactor, moves away from the corrin and is replaced by a histidine contributed by the protein. The sequence Asp-X-His-X-X-Gly, which contains this histidine ligand, is conserved in many cobalamin-binding proteins.
Probab=20.56 E-value=3.8e+02 Score=20.14 Aligned_cols=11 Identities=45% Similarity=0.709 Sum_probs=6.9
Q ss_pred HHHHHhcCCCc
Q 026913 12 ALALNDLGYKA 22 (231)
Q Consensus 12 a~~l~~~g~~~ 22 (231)
+..|+..|++.
T Consensus 20 ~~~l~~~G~~V 30 (119)
T cd02067 20 ARALRDAGFEV 30 (119)
T ss_pred HHHHHHCCCEE
Confidence 45566777664
No 328
>cd02929 TMADH_HD_FMN Trimethylamine dehydrogenase (TMADH) and histamine dehydrogenase (HD) FMN-binding domain. TMADH is an iron-sulfur flavoprotein that catalyzes the oxidative demethylation of trimethylamine to form dimethylamine and formaldehyde. The protein forms a symetrical dimer with each subunit containing one 4Fe-4S cluster and one FMN cofactor. It contains a unique flavin, in the form of a 6-S-cysteinyl FMN which is bent by ~25 degrees along the N5-N10 axis of the flavin isoalloxazine ring. This modification of the conformation of the flavin is thought to facilitate catalysis.The closely related histamine dehydrogenase catalyzes oxidative deamination of histamine.
Probab=20.51 E-value=1.3e+02 Score=28.17 Aligned_cols=36 Identities=11% Similarity=0.206 Sum_probs=28.7
Q ss_pred CeEEEEeCCC-CHHHHHHHHhcCCcccEEeeCCccccc
Q 026913 57 KMSITASNDL-NEETLDALNKQGHEVDAFGIGTYLVTC 93 (231)
Q Consensus 57 ~v~I~~S~~L-de~~i~~l~~~g~~id~fGvGT~l~~~ 93 (231)
++.|+++|++ +.+.+.++.++|. .|..++|..++.+
T Consensus 289 ~~pvi~~G~i~~~~~~~~~l~~g~-~D~V~~gR~~lad 325 (370)
T cd02929 289 SKPVVGVGRFTSPDKMVEVVKSGI-LDLIGAARPSIAD 325 (370)
T ss_pred CCCEEEeCCCCCHHHHHHHHHcCC-CCeeeechHhhhC
Confidence 4578888888 6788888888765 6888899888874
No 329
>TIGR02666 moaA molybdenum cofactor biosynthesis protein A, bacterial. The model for this family describes molybdenum cofactor biosynthesis protein A, or MoaA, as found in bacteria. It does not include the family of probable functional equivalent proteins from the archaea. MoaA works together with MoaC to synthesize precursor Z from guanine.
Probab=20.07 E-value=5.8e+02 Score=23.01 Aligned_cols=62 Identities=19% Similarity=0.236 Sum_probs=36.3
Q ss_pred HHHHHHhcCCCccEEeeCCCChHHHH---------HHHHHHHHHHhHhhCCCCCCCeEE--EEeCCCCHHHHHHHHh
Q 026913 11 VALALNDLGYKAVGIRLDSGDLAYLS---------CEARKFFRTIEKEFGVPDFEKMSI--TASNDLNEETLDALNK 76 (231)
Q Consensus 11 va~~l~~~g~~~~gVRlDSGDl~~ls---------~~~r~~ld~~~~~l~~~g~~~v~I--~~S~~Lde~~i~~l~~ 76 (231)
.+.+|.+.|.....|=+||-+..... .++.+.++.+. + .|+..++| ++.-+.|.+.+.++.+
T Consensus 104 ~~~~L~~~gl~~v~ISld~~~~~~~~~i~~~~~~~~~vl~~i~~l~-~---~G~~~v~in~vv~~g~n~~ei~~l~~ 176 (334)
T TIGR02666 104 HAKDLKEAGLKRVNVSLDSLDPERFAKITRRGGRLEQVLAGIDAAL-A---AGLEPVKLNTVVMRGVNDDEIVDLAE 176 (334)
T ss_pred HHHHHHHcCCCeEEEecccCCHHHhheeCCCCCCHHHHHHHHHHHH-H---cCCCcEEEEEEEeCCCCHHHHHHHHH
Confidence 35667777877667889997653211 12223333321 1 16654444 7777888888877765
Done!