Query 026915
Match_columns 231
No_of_seqs 310 out of 1679
Neff 6.6
Searched_HMMs 46136
Date Fri Mar 29 14:29:37 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/026915.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/026915hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03134 glycine-rich RNA-bind 99.8 1.6E-18 3.4E-23 140.6 12.0 83 131-218 33-115 (144)
2 TIGR01659 sex-lethal sex-letha 99.7 4.6E-17 1E-21 149.2 16.0 83 130-217 105-187 (346)
3 TIGR01659 sex-lethal sex-letha 99.7 4.6E-18 1E-22 155.7 7.8 160 33-218 114-276 (346)
4 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5.9E-17 1.3E-21 146.6 12.5 82 132-218 269-350 (352)
5 TIGR01661 ELAV_HUD_SF ELAV/HuD 99.7 5.4E-17 1.2E-21 146.9 11.3 83 131-218 2-84 (352)
6 KOG0148 Apoptosis-promoting RN 99.7 1.9E-17 4.1E-22 144.4 7.4 166 33-217 69-238 (321)
7 PF00076 RRM_1: RNA recognitio 99.7 3.5E-16 7.6E-21 108.9 7.6 70 135-210 1-70 (70)
8 KOG0121 Nuclear cap-binding pr 99.6 4.7E-16 1E-20 122.6 7.1 80 131-215 35-114 (153)
9 KOG0122 Translation initiation 99.6 1E-15 2.2E-20 131.9 9.2 82 131-217 188-269 (270)
10 TIGR01645 half-pint poly-U bin 99.6 1.3E-15 2.9E-20 147.7 8.0 168 33-218 114-285 (612)
11 KOG0107 Alternative splicing f 99.6 5.6E-15 1.2E-19 122.0 8.6 78 132-219 10-87 (195)
12 PLN03120 nucleic acid binding 99.6 1.1E-14 2.3E-19 127.8 10.3 76 132-216 4-79 (260)
13 TIGR01622 SF-CC1 splicing fact 99.5 3.4E-14 7.4E-19 133.2 11.4 80 132-216 186-265 (457)
14 PF14259 RRM_6: RNA recognitio 99.5 5.6E-14 1.2E-18 98.8 9.3 70 135-210 1-70 (70)
15 TIGR01642 U2AF_lg U2 snRNP aux 99.5 5.3E-14 1.1E-18 133.5 11.6 82 130-216 293-374 (509)
16 TIGR01645 half-pint poly-U bin 99.5 4.1E-14 8.8E-19 137.4 10.3 81 131-216 106-186 (612)
17 KOG0145 RNA-binding protein EL 99.5 3.3E-14 7.1E-19 123.9 8.5 83 131-218 40-122 (360)
18 KOG0144 RNA-binding protein CU 99.5 3E-14 6.5E-19 131.0 8.6 87 131-220 33-120 (510)
19 KOG0114 Predicted RNA-binding 99.5 8.2E-14 1.8E-18 106.4 9.6 86 123-216 9-94 (124)
20 TIGR01628 PABP-1234 polyadenyl 99.5 4.6E-14 1E-18 136.1 10.4 78 134-216 2-79 (562)
21 TIGR01622 SF-CC1 splicing fact 99.5 1.2E-13 2.6E-18 129.5 10.9 82 131-218 88-169 (457)
22 TIGR01648 hnRNP-R-Q heterogene 99.5 1.2E-13 2.6E-18 133.6 10.4 75 132-219 233-309 (578)
23 KOG0125 Ataxin 2-binding prote 99.5 1.6E-13 3.5E-18 122.6 9.5 81 130-217 94-174 (376)
24 KOG0144 RNA-binding protein CU 99.5 3.7E-14 8E-19 130.4 5.3 85 132-220 124-209 (510)
25 TIGR01628 PABP-1234 polyadenyl 99.5 2.4E-13 5.1E-18 131.2 11.1 81 131-217 284-364 (562)
26 TIGR01648 hnRNP-R-Q heterogene 99.5 2E-13 4.4E-18 132.1 10.5 82 129-215 55-136 (578)
27 smart00362 RRM_2 RNA recogniti 99.5 3.8E-13 8.3E-18 92.0 9.0 71 134-211 1-71 (72)
28 PLN03121 nucleic acid binding 99.5 2.6E-13 5.6E-18 117.7 9.8 75 132-215 5-79 (243)
29 KOG0149 Predicted RNA-binding 99.5 1.4E-13 3.1E-18 118.1 8.1 78 132-213 12-89 (247)
30 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 3.9E-13 8.4E-18 128.0 11.8 77 131-217 274-351 (481)
31 COG0724 RNA-binding proteins ( 99.5 3.9E-13 8.5E-18 113.0 10.0 79 132-215 115-193 (306)
32 KOG0105 Alternative splicing f 99.5 1.1E-13 2.5E-18 115.4 6.5 78 132-217 6-83 (241)
33 TIGR01649 hnRNP-L_PTB hnRNP-L/ 99.5 3.2E-13 6.9E-18 128.6 10.4 75 132-217 2-78 (481)
34 KOG0113 U1 small nuclear ribon 99.4 5.2E-13 1.1E-17 118.1 10.5 85 129-218 98-182 (335)
35 PLN03213 repressor of silencin 99.4 3.1E-13 6.6E-18 126.3 9.2 77 132-217 10-88 (759)
36 KOG0117 Heterogeneous nuclear 99.4 2.1E-13 4.4E-18 126.0 7.2 76 132-220 259-334 (506)
37 KOG0145 RNA-binding protein EL 99.4 8.4E-14 1.8E-18 121.4 3.8 167 29-218 36-210 (360)
38 smart00360 RRM RNA recognition 99.4 9.3E-13 2E-17 89.7 8.3 71 137-212 1-71 (71)
39 KOG0130 RNA-binding protein RB 99.4 4.3E-13 9.3E-18 106.9 7.4 81 131-216 71-151 (170)
40 KOG0111 Cyclophilin-type pepti 99.4 1.8E-13 3.9E-18 116.9 5.3 85 131-222 9-95 (298)
41 KOG0126 Predicted RNA-binding 99.4 3.3E-14 7.2E-19 118.1 0.5 81 131-216 34-114 (219)
42 KOG0108 mRNA cleavage and poly 99.4 5E-13 1.1E-17 125.4 7.8 82 133-219 19-100 (435)
43 cd00590 RRM RRM (RNA recogniti 99.4 3E-12 6.6E-17 88.0 9.7 74 134-213 1-74 (74)
44 KOG0109 RNA-binding protein LA 99.4 5.1E-13 1.1E-17 117.9 5.6 72 133-217 3-74 (346)
45 KOG0117 Heterogeneous nuclear 99.4 3.7E-12 8.1E-17 117.7 10.7 81 131-216 82-163 (506)
46 KOG4207 Predicted splicing fac 99.4 1.1E-12 2.4E-17 111.1 6.0 81 131-216 12-92 (256)
47 KOG0148 Apoptosis-promoting RN 99.3 3.4E-12 7.3E-17 111.8 7.8 82 132-218 62-143 (321)
48 PF13893 RRM_5: RNA recognitio 99.3 1.6E-11 3.5E-16 83.2 8.4 56 149-214 1-56 (56)
49 KOG4206 Spliceosomal protein s 99.3 6.9E-12 1.5E-16 107.2 7.9 82 132-221 9-94 (221)
50 KOG0127 Nucleolar protein fibr 99.3 8.5E-12 1.8E-16 117.8 8.8 81 131-217 116-196 (678)
51 KOG0415 Predicted peptidyl pro 99.3 1.1E-11 2.4E-16 112.1 7.3 83 131-218 238-320 (479)
52 KOG0131 Splicing factor 3b, su 99.3 1.1E-11 2.3E-16 103.2 6.6 80 130-215 7-87 (203)
53 KOG1457 RNA binding protein (c 99.2 7.5E-11 1.6E-15 101.1 10.9 92 129-223 31-124 (284)
54 KOG0127 Nucleolar protein fibr 99.2 6E-11 1.3E-15 112.1 8.9 80 132-216 292-377 (678)
55 KOG0146 RNA-binding protein ET 99.2 3.2E-11 6.9E-16 105.8 5.9 83 131-218 284-366 (371)
56 smart00361 RRM_1 RNA recogniti 99.2 1.4E-10 3E-15 82.4 7.7 63 146-211 2-69 (70)
57 KOG0147 Transcriptional coacti 99.1 8.2E-11 1.8E-15 111.1 7.1 148 52-217 204-358 (549)
58 KOG0146 RNA-binding protein ET 99.1 3.7E-11 8E-16 105.3 4.5 85 132-220 19-104 (371)
59 KOG0132 RNA polymerase II C-te 99.1 1.6E-10 3.4E-15 112.8 7.7 76 131-217 420-495 (894)
60 KOG4212 RNA-binding protein hn 99.1 5E-10 1.1E-14 103.7 10.3 73 132-214 536-608 (608)
61 KOG0110 RNA-binding protein (R 99.1 7.3E-11 1.6E-15 114.2 4.8 82 132-218 613-694 (725)
62 TIGR01642 U2AF_lg U2 snRNP aux 99.1 4.3E-10 9.3E-15 106.8 9.6 84 131-216 408-501 (509)
63 KOG0109 RNA-binding protein LA 99.1 1.4E-10 3E-15 102.6 5.4 75 131-218 77-151 (346)
64 KOG0123 Polyadenylate-binding 99.1 5E-10 1.1E-14 103.6 8.6 142 36-216 8-152 (369)
65 KOG0131 Splicing factor 3b, su 99.1 3.2E-10 6.9E-15 94.5 6.4 87 132-223 96-183 (203)
66 KOG0110 RNA-binding protein (R 99.0 6.6E-10 1.4E-14 107.7 8.2 81 133-215 516-596 (725)
67 KOG0153 Predicted RNA-binding 99.0 1.3E-09 2.8E-14 98.4 8.4 75 131-216 227-302 (377)
68 KOG4208 Nucleolar RNA-binding 99.0 2E-09 4.4E-14 91.1 8.4 82 131-217 48-130 (214)
69 KOG4212 RNA-binding protein hn 98.9 3.5E-09 7.5E-14 98.2 8.0 77 132-214 44-121 (608)
70 KOG0124 Polypyrimidine tract-b 98.9 1.5E-09 3.2E-14 98.9 5.1 76 132-212 113-188 (544)
71 KOG0533 RRM motif-containing p 98.9 8.8E-09 1.9E-13 90.1 8.2 81 132-218 83-163 (243)
72 KOG0124 Polypyrimidine tract-b 98.8 1.8E-09 4E-14 98.2 1.8 170 31-217 112-290 (544)
73 KOG0123 Polyadenylate-binding 98.8 2.2E-08 4.9E-13 92.7 8.3 74 133-217 2-75 (369)
74 KOG4209 Splicing factor RNPS1, 98.7 2.6E-08 5.7E-13 86.8 7.5 81 132-218 101-181 (231)
75 KOG1457 RNA binding protein (c 98.7 1.5E-08 3.2E-13 87.2 3.8 68 131-205 209-276 (284)
76 KOG0151 Predicted splicing reg 98.7 4E-08 8.7E-13 95.5 7.0 83 132-216 174-256 (877)
77 KOG4661 Hsp27-ERE-TATA-binding 98.7 8.6E-08 1.9E-12 91.5 9.0 82 132-218 405-486 (940)
78 KOG4205 RNA-binding protein mu 98.7 2.4E-08 5.3E-13 90.3 5.0 78 131-214 5-82 (311)
79 KOG4660 Protein Mei2, essentia 98.7 2.6E-08 5.7E-13 94.5 5.3 70 131-210 74-143 (549)
80 KOG1548 Transcription elongati 98.7 9.5E-08 2.1E-12 86.4 8.5 80 130-215 132-219 (382)
81 KOG0106 Alternative splicing f 98.7 1.9E-08 4.2E-13 86.4 3.8 71 133-216 2-72 (216)
82 KOG4206 Spliceosomal protein s 98.6 1.8E-07 3.9E-12 80.3 8.2 76 131-215 145-220 (221)
83 KOG4454 RNA binding protein (R 98.6 2E-08 4.4E-13 86.0 2.4 78 131-215 8-85 (267)
84 KOG0116 RasGAP SH3 binding pro 98.6 9.4E-08 2E-12 89.6 6.1 79 132-216 288-366 (419)
85 PF04059 RRM_2: RNA recognitio 98.4 1.4E-06 3.1E-11 66.2 8.7 81 133-217 2-87 (97)
86 KOG4205 RNA-binding protein mu 98.4 4.9E-07 1.1E-11 81.9 6.0 80 132-217 97-176 (311)
87 KOG1190 Polypyrimidine tract-b 98.4 2.2E-06 4.8E-11 79.2 9.3 77 132-218 297-374 (492)
88 KOG0226 RNA-binding proteins [ 98.3 7.1E-07 1.5E-11 78.0 5.7 78 130-212 188-265 (290)
89 KOG1995 Conserved Zn-finger pr 98.2 3.8E-06 8.2E-11 76.4 7.7 83 131-218 65-155 (351)
90 PF11608 Limkain-b1: Limkain b 98.2 8.4E-06 1.8E-10 60.3 7.8 69 133-216 3-76 (90)
91 KOG1456 Heterogeneous nuclear 98.2 7.9E-05 1.7E-09 68.6 15.3 78 131-218 286-364 (494)
92 KOG1190 Polypyrimidine tract-b 98.1 7.7E-06 1.7E-10 75.7 7.6 79 131-217 413-491 (492)
93 KOG1456 Heterogeneous nuclear 98.1 1.1E-05 2.3E-10 74.2 8.1 88 132-227 120-209 (494)
94 KOG0120 Splicing factor U2AF, 98.1 3.6E-06 7.8E-11 80.3 5.0 83 129-216 286-368 (500)
95 KOG4210 Nuclear localization s 98.0 6.2E-06 1.3E-10 74.1 4.0 82 132-219 184-266 (285)
96 PF08777 RRM_3: RNA binding mo 97.9 2.6E-05 5.6E-10 60.1 6.3 59 133-200 2-60 (105)
97 KOG1855 Predicted RNA-binding 97.9 1.8E-05 3.9E-10 73.6 5.6 71 131-201 230-310 (484)
98 KOG4211 Splicing factor hnRNP- 97.9 2.9E-05 6.3E-10 73.3 7.0 58 132-195 10-67 (510)
99 KOG0106 Alternative splicing f 97.9 9.7E-06 2.1E-10 69.9 3.1 70 131-213 98-167 (216)
100 KOG4307 RNA binding protein RB 97.7 0.00043 9.3E-09 68.0 12.1 75 132-212 867-942 (944)
101 KOG0147 Transcriptional coacti 97.6 1.4E-05 3.1E-10 76.2 0.7 83 131-219 178-260 (549)
102 PF14605 Nup35_RRM_2: Nup53/35 97.6 0.00012 2.5E-09 49.6 5.0 52 133-194 2-53 (53)
103 KOG4211 Splicing factor hnRNP- 97.5 0.00024 5.2E-09 67.2 7.1 68 132-204 103-171 (510)
104 KOG2314 Translation initiation 97.5 0.00031 6.7E-09 67.6 7.8 76 132-212 58-139 (698)
105 COG5175 MOT2 Transcriptional r 97.5 0.00037 8E-09 63.5 7.2 82 132-216 114-202 (480)
106 KOG4849 mRNA cleavage factor I 97.4 0.00016 3.5E-09 66.1 4.0 80 133-216 81-162 (498)
107 PF08675 RNA_bind: RNA binding 97.3 0.0018 4E-08 47.9 7.6 55 132-198 9-63 (87)
108 KOG0128 RNA-binding protein SA 97.2 0.00017 3.7E-09 72.0 2.0 79 132-216 736-814 (881)
109 KOG0129 Predicted RNA-binding 97.1 0.0012 2.7E-08 62.8 6.9 65 131-196 258-325 (520)
110 KOG0120 Splicing factor U2AF, 97.1 0.0019 4.2E-08 62.0 7.9 62 151-215 428-490 (500)
111 KOG0112 Large RNA-binding prot 97.0 0.00098 2.1E-08 67.1 5.4 79 132-219 455-533 (975)
112 KOG2416 Acinus (induces apopto 96.8 0.0012 2.6E-08 64.0 4.2 78 130-216 442-521 (718)
113 KOG0129 Predicted RNA-binding 96.8 0.0032 7E-08 60.1 6.9 64 129-196 367-432 (520)
114 KOG3152 TBP-binding protein, a 96.6 0.0014 3E-08 57.7 2.9 74 132-205 74-156 (278)
115 KOG0105 Alternative splicing f 96.6 0.02 4.3E-07 48.6 9.3 64 132-205 115-178 (241)
116 KOG4676 Splicing factor, argin 96.5 0.0032 7E-08 58.4 4.7 72 133-205 8-79 (479)
117 KOG1365 RNA-binding protein Fu 96.5 0.015 3.3E-07 54.0 8.9 61 132-196 161-225 (508)
118 PF05172 Nup35_RRM: Nup53/35/4 96.5 0.015 3.2E-07 44.5 7.3 73 132-216 6-91 (100)
119 PF10309 DUF2414: Protein of u 96.4 0.012 2.6E-07 41.1 6.1 54 133-197 6-62 (62)
120 KOG4574 RNA-binding protein (c 96.3 0.0022 4.8E-08 64.3 2.4 76 133-217 299-374 (1007)
121 KOG1548 Transcription elongati 96.3 0.018 3.9E-07 52.8 7.7 77 131-216 264-351 (382)
122 KOG0128 RNA-binding protein SA 96.0 0.00047 1E-08 68.9 -4.1 69 132-203 667-735 (881)
123 KOG1365 RNA-binding protein Fu 96.0 0.017 3.7E-07 53.7 6.2 74 132-211 280-356 (508)
124 KOG2193 IGF-II mRNA-binding pr 95.9 0.0085 1.9E-07 56.3 4.0 71 133-216 2-75 (584)
125 PF08952 DUF1866: Domain of un 95.8 0.028 6E-07 45.8 6.1 53 148-214 52-104 (146)
126 KOG0112 Large RNA-binding prot 95.8 0.002 4.3E-08 64.9 -0.6 78 131-215 371-449 (975)
127 KOG2202 U2 snRNP splicing fact 95.6 0.0056 1.2E-07 53.9 1.6 59 151-215 87-146 (260)
128 KOG0115 RNA-binding protein p5 95.6 0.013 2.7E-07 51.8 3.8 61 133-197 32-92 (275)
129 PF03467 Smg4_UPF3: Smg-4/UPF3 95.6 0.041 8.9E-07 46.1 6.6 83 131-215 6-96 (176)
130 KOG2253 U1 snRNP complex, subu 95.4 0.028 6.1E-07 55.2 5.5 63 131-205 39-101 (668)
131 KOG4307 RNA binding protein RB 95.3 0.021 4.6E-07 56.5 4.7 82 127-214 429-511 (944)
132 KOG1996 mRNA splicing factor [ 95.2 0.053 1.1E-06 48.9 6.3 66 146-215 300-365 (378)
133 KOG2068 MOT2 transcription fac 94.8 0.016 3.4E-07 52.9 1.9 82 132-217 77-163 (327)
134 PF15023 DUF4523: Protein of u 94.7 0.14 3.1E-06 41.7 7.0 71 132-215 86-160 (166)
135 PF04847 Calcipressin: Calcipr 94.3 0.11 2.4E-06 43.9 5.8 62 145-217 8-71 (184)
136 PF07576 BRAP2: BRCA1-associat 94.0 1 2.2E-05 35.0 10.2 76 133-215 14-93 (110)
137 KOG4660 Protein Mei2, essentia 93.7 0.12 2.6E-06 50.0 5.4 82 132-218 361-474 (549)
138 PF03880 DbpA: DbpA RNA bindin 93.7 0.36 7.9E-06 34.4 6.8 67 134-214 2-74 (74)
139 KOG2591 c-Mpl binding protein, 92.6 0.37 8E-06 46.9 6.8 65 131-205 174-247 (684)
140 KOG2318 Uncharacterized conser 89.0 1.6 3.5E-05 42.8 7.5 85 130-214 172-305 (650)
141 KOG4285 Mitotic phosphoprotein 87.0 1.2 2.6E-05 40.5 5.0 70 133-214 198-267 (350)
142 KOG0804 Cytoplasmic Zn-finger 86.9 3 6.4E-05 39.8 7.8 67 132-203 74-141 (493)
143 KOG0226 RNA-binding proteins [ 86.0 0.093 2E-06 46.4 -2.4 68 27-98 188-261 (290)
144 KOG2891 Surface glycoprotein [ 85.9 0.61 1.3E-05 42.1 2.6 90 128-217 145-268 (445)
145 KOG2135 Proteins containing th 85.2 0.75 1.6E-05 44.0 3.0 73 132-216 372-445 (526)
146 KOG4210 Nuclear localization s 84.8 0.79 1.7E-05 41.3 2.8 72 131-205 87-158 (285)
147 PF11767 SET_assoc: Histone ly 83.5 4.8 0.0001 28.4 5.8 50 143-204 11-60 (66)
148 KOG2193 IGF-II mRNA-binding pr 78.4 0.098 2.1E-06 49.4 -5.4 77 131-215 79-155 (584)
149 KOG4676 Splicing factor, argin 72.3 0.82 1.8E-05 42.9 -1.1 67 131-205 150-216 (479)
150 PF03468 XS: XS domain; Inter 63.3 6.8 0.00015 30.6 2.6 56 133-194 9-74 (116)
151 KOG4019 Calcineurin-mediated s 60.5 9.6 0.00021 32.3 3.1 76 133-218 11-91 (193)
152 KOG2295 C2H2 Zn-finger protein 59.6 1.8 3.9E-05 42.3 -1.5 70 132-205 231-301 (648)
153 COG0724 RNA-binding proteins ( 57.9 15 0.00033 30.1 4.0 64 130-196 223-286 (306)
154 PF10567 Nab6_mRNP_bdg: RNA-re 57.7 22 0.00047 32.4 5.0 82 132-215 15-106 (309)
155 KOG4008 rRNA processing protei 53.9 6.5 0.00014 34.6 1.1 32 132-163 40-71 (261)
156 KOG4410 5-formyltetrahydrofola 53.4 15 0.00032 33.4 3.3 50 132-189 330-379 (396)
157 PF14893 PNMA: PNMA 52.0 12 0.00026 34.5 2.6 50 132-186 18-71 (331)
158 KOG4454 RNA binding protein (R 50.2 4.6 0.0001 35.3 -0.4 70 132-205 80-153 (267)
159 COG5638 Uncharacterized conser 49.4 59 0.0013 31.1 6.7 84 131-214 145-295 (622)
160 KOG4483 Uncharacterized conser 46.0 36 0.00077 32.4 4.7 55 132-196 391-446 (528)
161 KOG2187 tRNA uracil-5-methyltr 35.9 34 0.00074 33.5 3.0 39 179-219 65-103 (534)
162 PF15513 DUF4651: Domain of un 31.2 87 0.0019 21.9 3.7 20 147-166 9-28 (62)
163 PF07292 NID: Nmi/IFP 35 domai 29.8 33 0.00072 25.5 1.5 22 132-153 52-73 (88)
164 PF11411 DNA_ligase_IV: DNA li 29.2 35 0.00076 21.2 1.3 17 142-158 19-35 (36)
165 PRK14548 50S ribosomal protein 26.4 1.4E+02 0.003 21.9 4.3 55 136-196 24-80 (84)
166 KOG4365 Uncharacterized conser 23.3 16 0.00034 35.1 -1.5 79 132-216 3-81 (572)
167 PF00403 HMA: Heavy-metal-asso 21.8 2.4E+02 0.0052 18.3 6.3 54 134-196 1-58 (62)
168 KOG1295 Nonsense-mediated deca 20.8 1.3E+02 0.0028 28.3 3.9 70 132-203 7-78 (376)
No 1
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=99.78 E-value=1.6e-18 Score=140.57 Aligned_cols=83 Identities=19% Similarity=0.331 Sum_probs=75.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.+++|||+|||++++|++|+++|++||.|++|+|+.++. .|+++|||||+|++.++|++||+.|||..|.++ .|+
T Consensus 33 ~~~~lfVgnL~~~~te~~L~~~F~~~G~I~~v~i~~d~~---tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr--~l~ 107 (144)
T PLN03134 33 MSTKLFIGGLSWGTDDASLRDAFAHFGDVVDAKVIVDRE---TGRSRGFGFVNFNDEGAATAAISEMDGKELNGR--HIR 107 (144)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHhcCCCeEEEEEEecCC---CCCcceEEEEEECCHHHHHHHHHHcCCCEECCE--EEE
Confidence 368999999999999999999999999999999999872 256777999999999999999999999999977 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++.+.
T Consensus 108 V~~a~~~~ 115 (144)
T PLN03134 108 VNPANDRP 115 (144)
T ss_pred EEeCCcCC
Confidence 99997654
No 2
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.74 E-value=4.6e-17 Score=149.15 Aligned_cols=83 Identities=24% Similarity=0.345 Sum_probs=75.1
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
...++|||+|||+++||++|+++|+.||.|++|+|+.++. .|+++|||||+|.++++|++||+.|||..|.++ +|
T Consensus 105 ~~~~~LfVgnLp~~~te~~L~~lF~~~G~V~~v~i~~d~~---tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr--~i 179 (346)
T TIGR01659 105 NSGTNLIVNYLPQDMTDRELYALFRTIGPINTCRIMRDYK---TGYSFGYAFVDFGSEADSQRAIKNLNGITVRNK--RL 179 (346)
T ss_pred CCCcEEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---CCccCcEEEEEEccHHHHHHHHHHcCCCccCCc--ee
Confidence 3579999999999999999999999999999999999862 255667999999999999999999999999976 99
Q ss_pred EEEeecCC
Q 026915 210 RIDVTGNL 217 (231)
Q Consensus 210 ~V~~ak~~ 217 (231)
+|+|++..
T Consensus 180 ~V~~a~p~ 187 (346)
T TIGR01659 180 KVSYARPG 187 (346)
T ss_pred eeeccccc
Confidence 99999754
No 3
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=99.73 E-value=4.6e-18 Score=155.72 Aligned_cols=160 Identities=15% Similarity=0.164 Sum_probs=119.9
Q ss_pred CCCcccCcccccccccccCCCCCCCcccccchhhhhccCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 026915 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGP 109 (231)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~d~~~~~~~--~~s~~~g-~~~r~~~Gg~~g~~~~~~~~~~~gg~~~~~ 109 (231)
.+..|++...+++.|.. |-.|.+++++.+..+ .++++ |+.|.+. ++..++. .|++..+.+..+...
T Consensus 114 nLp~~~te~~L~~lF~~-~G~V~~v~i~~d~~t--g~srGyaFVeF~~~e~A~~Ai~-~LnG~~l~gr~i~V~------- 182 (346)
T TIGR01659 114 YLPQDMTDRELYALFRT-IGPINTCRIMRDYKT--GYSFGYAFVDFGSEADSQRAIK-NLNGITVRNKRLKVS------- 182 (346)
T ss_pred CCCCCCCHHHHHHHHHh-cCCEEEEEEEecCCC--CccCcEEEEEEccHHHHHHHHH-HcCCCccCCceeeee-------
Confidence 57788888888888876 444777787753332 24444 6778776 4446776 788887776543221
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHH
Q 026915 110 SAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAH 189 (231)
Q Consensus 110 ~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~ 189 (231)
+. .+.. .....++|||+|||+++||++|+++|++||.|++|+|+.++. .|+++|||||+|++.++
T Consensus 183 --------~a--~p~~--~~~~~~~lfV~nLp~~vtee~L~~~F~~fG~V~~v~i~~d~~---tg~~kG~aFV~F~~~e~ 247 (346)
T TIGR01659 183 --------YA--RPGG--ESIKDTNLYVTNLPRTITDDQLDTIFGKYGQIVQKNILRDKL---TGTPRGVAFVRFNKREE 247 (346)
T ss_pred --------cc--cccc--cccccceeEEeCCCCcccHHHHHHHHHhcCCEEEEEEeecCC---CCccceEEEEEECCHHH
Confidence 00 0000 011257899999999999999999999999999999998862 36677799999999999
Q ss_pred HHHHHHHhcCceecCCcccEEEEeecCCC
Q 026915 190 AATAMDALQVKSCCAKSVPIRIDVTGNLT 218 (231)
Q Consensus 190 A~~Al~~L~G~~l~g~~~~L~V~~ak~~~ 218 (231)
|++||+.||+..+.+..++|+|.|++...
T Consensus 248 A~~Ai~~lng~~~~g~~~~l~V~~a~~~~ 276 (346)
T TIGR01659 248 AQEAISALNNVIPEGGSQPLTVRLAEEHG 276 (346)
T ss_pred HHHHHHHhCCCccCCCceeEEEEECCccc
Confidence 99999999999998766689999998654
No 4
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.72 E-value=5.9e-17 Score=146.62 Aligned_cols=82 Identities=18% Similarity=0.251 Sum_probs=74.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+.+|||+|||+++++++|+++|++||.|.+|+|+.+.. .|+++|||||+|.+.++|.+||..|||..|.++ .|+|
T Consensus 269 ~~~lfV~NL~~~~~e~~L~~~F~~fG~v~~v~i~~d~~---t~~skG~aFV~F~~~~~A~~Ai~~lnG~~~~gr--~i~V 343 (352)
T TIGR01661 269 GYCIFVYNLSPDTDETVLWQLFGPFGAVQNVKIIRDLT---TNQCKGYGFVSMTNYDEAAMAILSLNGYTLGNR--VLQV 343 (352)
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHhCCCeEEEEEeEcCC---CCCccceEEEEECCHHHHHHHHHHhCCCEECCe--EEEE
Confidence 56899999999999999999999999999999999972 256777999999999999999999999999977 9999
Q ss_pred EeecCCC
Q 026915 212 DVTGNLT 218 (231)
Q Consensus 212 ~~ak~~~ 218 (231)
+|+.+..
T Consensus 344 ~~~~~~~ 350 (352)
T TIGR01661 344 SFKTNKA 350 (352)
T ss_pred EEccCCC
Confidence 9987653
No 5
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=99.71 E-value=5.4e-17 Score=146.86 Aligned_cols=83 Identities=23% Similarity=0.384 Sum_probs=75.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|||+|||.+++|++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||+.|||..|.++ +|+
T Consensus 2 ~~~~l~V~nLp~~~~e~~l~~~F~~~G~i~~v~i~~d~~---~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~--~i~ 76 (352)
T TIGR01661 2 SKTNLIVNYLPQTMTQEEIRSLFTSIGEIESCKLVRDKV---TGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNK--TIK 76 (352)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHccCCEEEEEEEEcCC---CCccceEEEEEECcHHHHHHHHhhcccEEECCe--eEE
Confidence 368999999999999999999999999999999999872 266778999999999999999999999999977 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+|++...
T Consensus 77 v~~a~~~~ 84 (352)
T TIGR01661 77 VSYARPSS 84 (352)
T ss_pred EEeecccc
Confidence 99997643
No 6
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.71 E-value=1.9e-17 Score=144.44 Aligned_cols=166 Identities=16% Similarity=0.201 Sum_probs=125.2
Q ss_pred CCCcccCcccccccccccCCCCCCCcccccchhhhhccCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCC
Q 026915 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGP 109 (231)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~d~~~~~~~--~~s~~~g-~~~r~~~Gg~~g~~~~~~~~~~~gg~~~~~ 109 (231)
|+..||..-.++|.|-. |--|.++|||.+..+ .-||| |+||..- ++-+++. +|+|.=++.+.+..- =+.+-+
T Consensus 69 dls~eI~~e~lr~aF~p-FGevS~akvirD~~T--~KsKGYgFVSf~~k~dAEnAI~-~MnGqWlG~R~IRTN-WATRKp 143 (321)
T KOG0148|consen 69 DLSPEIDNEKLREAFAP-FGEVSDAKVIRDMNT--GKSKGYGFVSFPNKEDAENAIQ-QMNGQWLGRRTIRTN-WATRKP 143 (321)
T ss_pred hcchhcchHHHHHHhcc-ccccccceEeecccC--CcccceeEEeccchHHHHHHHH-HhCCeeeccceeecc-ccccCc
Confidence 89999999999998743 667899999986666 36776 6788884 6667887 899987776533211 011111
Q ss_pred C-CCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHH
Q 026915 110 S-AKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPA 188 (231)
Q Consensus 110 ~-~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~ 188 (231)
. .++....|-... ....| .+++|||+||+.-+||++|++.|++||.|.+||+.+++ | |+||.|++.|
T Consensus 144 ~e~n~~~ltfdeV~-NQssp--~NtsVY~G~I~~~lte~~mr~~Fs~fG~I~EVRvFk~q-----G----YaFVrF~tkE 211 (321)
T KOG0148|consen 144 SEMNGKPLTFDEVY-NQSSP--DNTSVYVGNIASGLTEDLMRQTFSPFGPIQEVRVFKDQ-----G----YAFVRFETKE 211 (321)
T ss_pred cccCCCCccHHHHh-ccCCC--CCceEEeCCcCccccHHHHHHhcccCCcceEEEEeccc-----c----eEEEEecchh
Confidence 0 011111111000 11122 38999999999999999999999999999999999997 5 9999999999
Q ss_pred HHHHHHHHhcCceecCCcccEEEEeecCC
Q 026915 189 HAATAMDALQVKSCCAKSVPIRIDVTGNL 217 (231)
Q Consensus 189 ~A~~Al~~L~G~~l~g~~~~L~V~~ak~~ 217 (231)
+|..||..+||..|.++ .+++.|.|..
T Consensus 212 aAahAIv~mNntei~G~--~VkCsWGKe~ 238 (321)
T KOG0148|consen 212 AAAHAIVQMNNTEIGGQ--LVRCSWGKEG 238 (321)
T ss_pred hHHHHHHHhcCceeCce--EEEEeccccC
Confidence 99999999999999988 9999999864
No 7
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=99.66 E-value=3.5e-16 Score=108.93 Aligned_cols=70 Identities=29% Similarity=0.499 Sum_probs=63.7
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 135 LfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
|||+|||.++|+++|+++|++||.|..+++..+.+ +..++||||+|.+.++|++|++.|||+.+.+. .||
T Consensus 1 l~v~nlp~~~t~~~l~~~f~~~g~i~~~~~~~~~~----~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~--~ir 70 (70)
T PF00076_consen 1 LYVGNLPPDVTEEELRDFFSQFGKIESIKVMRNSS----GKSKGYAFVEFESEEDAEKALEELNGKKINGR--KIR 70 (70)
T ss_dssp EEEESETTTSSHHHHHHHHHTTSTEEEEEEEEETT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE--EEE
T ss_pred cEEcCCCCcCCHHHHHHHHHHhhhccccccccccc----ccccceEEEEEcCHHHHHHHHHHcCCCEECcc--CcC
Confidence 79999999999999999999999999999998732 55677999999999999999999999999976 664
No 8
>KOG0121 consensus Nuclear cap-binding protein complex, subunit CBP20 (RRM superfamily) [RNA processing and modification]
Probab=99.64 E-value=4.7e-16 Score=122.63 Aligned_cols=80 Identities=21% Similarity=0.343 Sum_probs=72.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.++||||+||++.++||.|.+||+.+|.|+.|.+-.++.+ -+|.|||||+|.++++|+.|+..++|..++.+ +|+
T Consensus 35 ~S~tvyVgNlSfyttEEqiyELFs~cG~irriiMGLdr~k---ktpCGFCFVeyy~~~dA~~AlryisgtrLddr--~ir 109 (153)
T KOG0121|consen 35 KSCTVYVGNLSFYTTEEQIYELFSKCGDIRRIIMGLDRFK---KTPCGFCFVEYYSRDDAEDALRYISGTRLDDR--PIR 109 (153)
T ss_pred hcceEEEeeeeeeecHHHHHHHHHhccchheeEeccccCC---cCccceEEEEEecchhHHHHHHHhccCccccc--cee
Confidence 3899999999999999999999999999999988888733 24566999999999999999999999999977 999
Q ss_pred EEeec
Q 026915 211 IDVTG 215 (231)
Q Consensus 211 V~~ak 215 (231)
|.|--
T Consensus 110 ~D~D~ 114 (153)
T KOG0121|consen 110 IDWDA 114 (153)
T ss_pred eeccc
Confidence 99864
No 9
>KOG0122 consensus Translation initiation factor 3, subunit g (eIF-3g) [Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1e-15 Score=131.91 Aligned_cols=82 Identities=24% Similarity=0.299 Sum_probs=75.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|-|.||+.+++|++|++||.+||.|..|.|..++. .|.++|||||.|+++++|++||+.|||+-++.= .|+
T Consensus 188 D~~tvRvtNLsed~~E~dL~eLf~~fg~i~rvylardK~---TG~~kGFAFVtF~sRddA~rAI~~LnG~gyd~L--ILr 262 (270)
T KOG0122|consen 188 DEATVRVTNLSEDMREDDLEELFRPFGPITRVYLARDKE---TGLSKGFAFVTFESRDDAARAIADLNGYGYDNL--ILR 262 (270)
T ss_pred ccceeEEecCccccChhHHHHHhhccCccceeEEEEccc---cCcccceEEEEEecHHHHHHHHHHccCcccceE--EEE
Confidence 479999999999999999999999999999999999983 378888999999999999999999999998844 899
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|+|+++.
T Consensus 263 vEwskP~ 269 (270)
T KOG0122|consen 263 VEWSKPS 269 (270)
T ss_pred EEecCCC
Confidence 9999875
No 10
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.60 E-value=1.3e-15 Score=147.68 Aligned_cols=168 Identities=11% Similarity=0.121 Sum_probs=111.9
Q ss_pred CCCcccCcccccccccccCCCCCCCcccccchhhhh-ccCC--CCCCCCCCCC-CCCCCCCCCCCCCCCCccccCCCCCC
Q 026915 33 PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYL-RSAQ--ISSYSGGQSA-RHMSGGMPSRPVDDPRIVGIGGMDPG 108 (231)
Q Consensus 33 ~~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~d~~~-~~~~--~~s~~~g~~~-r~~~Gg~~g~~~~~~~~~~~gg~~~~ 108 (231)
.+..+++.=-+++.|.. |-.|+.++++ +|+.. .++| |..|...+.+ +++. .|+|..+.++.+...-...
T Consensus 114 nLp~~~tEe~Lr~lF~~-fG~I~sV~I~---~D~~TgkskGfAFVeF~s~e~A~~Ai~-~lnG~~i~GR~IkV~rp~~-- 186 (612)
T TIGR01645 114 SISFELREDTIRRAFDP-FGPIKSINMS---WDPATGKHKGFAFVEYEVPEAAQLALE-QMNGQMLGGRNIKVGRPSN-- 186 (612)
T ss_pred CCCCCCCHHHHHHHHHc-cCCEEEEEEe---ecCCCCCcCCeEEEEeCcHHHHHHHHH-hcCCeEEecceeeeccccc--
Confidence 34445554444444433 3344444444 56442 4555 5677775444 5676 7888877776543321000
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHH
Q 026915 109 PSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPA 188 (231)
Q Consensus 109 ~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~ 188 (231)
.+... ....... ......++|||+|||+++++++|+++|+.||.|++|+|+.++. +|+++|||||+|++.+
T Consensus 187 -~p~a~--~~~~~~~---~~~~~~~rLfVgnLp~~vteedLk~lFs~FG~I~svrl~~D~~---tgksKGfGFVeFe~~e 257 (612)
T TIGR01645 187 -MPQAQ--PIIDMVQ---EEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPT---GRGHKGYGFIEYNNLQ 257 (612)
T ss_pred -ccccc--ccccccc---ccccccceEEeecCCCCCCHHHHHHHHhhcCCeeEEEEEecCC---CCCcCCeEEEEECCHH
Confidence 00000 0000000 0111357999999999999999999999999999999999873 2556679999999999
Q ss_pred HHHHHHHHhcCceecCCcccEEEEeecCCC
Q 026915 189 HAATAMDALQVKSCCAKSVPIRIDVTGNLT 218 (231)
Q Consensus 189 ~A~~Al~~L~G~~l~g~~~~L~V~~ak~~~ 218 (231)
+|.+||+.|||..|.++ .|+|.++..+.
T Consensus 258 ~A~kAI~amNg~elgGr--~LrV~kAi~pP 285 (612)
T TIGR01645 258 SQSEAIASMNLFDLGGQ--YLRVGKCVTPP 285 (612)
T ss_pred HHHHHHHHhCCCeeCCe--EEEEEecCCCc
Confidence 99999999999999987 99999998644
No 11
>KOG0107 consensus Alternative splicing factor SRp20/9G8 (RRM superfamily) [RNA processing and modification]
Probab=99.58 E-value=5.6e-15 Score=121.95 Aligned_cols=78 Identities=24% Similarity=0.477 Sum_probs=71.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.++|||+||+.++++.||+.+|..||.|.+|.|...+ .| ||||||+++.+|+.|+..|+|..|.+. .|+|
T Consensus 10 ~~kVYVGnL~~~a~k~eLE~~F~~yG~lrsvWvArnP----PG----fAFVEFed~RDA~DAvr~LDG~~~cG~--r~rV 79 (195)
T KOG0107|consen 10 NTKVYVGNLGSRATKRELERAFSKYGPLRSVWVARNP----PG----FAFVEFEDPRDAEDAVRYLDGKDICGS--RIRV 79 (195)
T ss_pred CceEEeccCCCCcchHHHHHHHHhcCcceeEEEeecC----CC----ceEEeccCcccHHHHHhhcCCccccCc--eEEE
Confidence 5899999999999999999999999999999988864 24 999999999999999999999999987 8999
Q ss_pred EeecCCCC
Q 026915 212 DVTGNLTG 219 (231)
Q Consensus 212 ~~ak~~~~ 219 (231)
+++.....
T Consensus 80 E~S~G~~r 87 (195)
T KOG0107|consen 80 ELSTGRPR 87 (195)
T ss_pred EeecCCcc
Confidence 99976543
No 12
>PLN03120 nucleic acid binding protein; Provisional
Probab=99.57 E-value=1.1e-14 Score=127.81 Aligned_cols=76 Identities=18% Similarity=0.252 Sum_probs=69.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.++|||+|||+++||++|+++|+.||.|.+|+|+.++. ++|||||+|+++++|++||. |+|..|.++ .|+|
T Consensus 4 ~rtVfVgNLs~~tTE~dLrefFS~~G~I~~V~I~~d~~------~~GfAFVtF~d~eaAe~All-LnG~~l~gr--~V~V 74 (260)
T PLN03120 4 VRTVKVSNVSLKATERDIKEFFSFSGDIEYVEMQSENE------RSQIAYVTFKDPQGAETALL-LSGATIVDQ--SVTI 74 (260)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHhcCCeEEEEEeecCC------CCCEEEEEeCcHHHHHHHHH-hcCCeeCCc--eEEE
Confidence 58999999999999999999999999999999998852 22399999999999999995 999999987 9999
Q ss_pred EeecC
Q 026915 212 DVTGN 216 (231)
Q Consensus 212 ~~ak~ 216 (231)
.++..
T Consensus 75 t~a~~ 79 (260)
T PLN03120 75 TPAED 79 (260)
T ss_pred EeccC
Confidence 99874
No 13
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.54 E-value=3.4e-14 Score=133.22 Aligned_cols=80 Identities=21% Similarity=0.395 Sum_probs=73.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+++|||+|||.++|+++|+++|++||.|..|+|+.++. .|+++|||||+|.+.++|.+|+..|||..|.++ +|+|
T Consensus 186 ~~~l~v~nl~~~~te~~l~~~f~~~G~i~~v~~~~d~~---~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~--~i~v 260 (457)
T TIGR01622 186 FLKLYVGNLHFNITEQELRQIFEPFGDIEDVQLHRDPE---TGRSKGFGFIQFHDAEEAKEALEVMNGFELAGR--PIKV 260 (457)
T ss_pred CCEEEEcCCCCCCCHHHHHHHHHhcCCeEEEEEEEcCC---CCccceEEEEEECCHHHHHHHHHhcCCcEECCE--EEEE
Confidence 68999999999999999999999999999999998863 256777999999999999999999999999876 9999
Q ss_pred EeecC
Q 026915 212 DVTGN 216 (231)
Q Consensus 212 ~~ak~ 216 (231)
.|+..
T Consensus 261 ~~a~~ 265 (457)
T TIGR01622 261 GYAQD 265 (457)
T ss_pred EEccC
Confidence 99864
No 14
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=99.54 E-value=5.6e-14 Score=98.81 Aligned_cols=70 Identities=24% Similarity=0.487 Sum_probs=61.6
Q ss_pred EEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 135 LFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 135 LfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
|||+|||+++++++|.++|+.||.|..+++..++. |+++++|||+|.+.++|.+|++.++|..+.++ .|+
T Consensus 1 v~i~nlp~~~~~~~l~~~f~~~g~v~~v~~~~~~~----~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~--~l~ 70 (70)
T PF14259_consen 1 VYISNLPPSTTEEDLRNFFSRFGPVEKVRLIKNKD----GQSRGFAFVEFSSEEDAKRALELLNGKEIDGR--KLR 70 (70)
T ss_dssp EEEESSTTT--HHHHHHHCTTSSBEEEEEEEESTT----SSEEEEEEEEESSHHHHHHHHHHHTTEEETTE--EEE
T ss_pred CEEeCCCCCCCHHHHHHHHHhcCCcceEEEEeeec----cccCCEEEEEeCCHHHHHHHHHHCCCcEECCE--EcC
Confidence 79999999999999999999999999999998863 56777999999999999999999999999876 553
No 15
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.53 E-value=5.3e-14 Score=133.51 Aligned_cols=82 Identities=16% Similarity=0.303 Sum_probs=74.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
+..++|||+|||+++|+++|+++|+.||.|..++|+.+.. .|.++|||||+|.+.++|+.||+.|+|..|.+. .|
T Consensus 293 ~~~~~l~v~nlp~~~~~~~l~~~f~~~G~i~~~~~~~~~~---~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~--~l 367 (509)
T TIGR01642 293 DSKDRIYIGNLPLYLGEDQIKELLESFGDLKAFNLIKDIA---TGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDN--KL 367 (509)
T ss_pred CCCCEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEEecCC---CCCcCeEEEEEECCHHHHHHHHHHcCCCEECCe--EE
Confidence 3468999999999999999999999999999999998862 266777999999999999999999999999977 89
Q ss_pred EEEeecC
Q 026915 210 RIDVTGN 216 (231)
Q Consensus 210 ~V~~ak~ 216 (231)
+|.++..
T Consensus 368 ~v~~a~~ 374 (509)
T TIGR01642 368 HVQRACV 374 (509)
T ss_pred EEEECcc
Confidence 9999864
No 16
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=99.52 E-value=4.1e-14 Score=137.42 Aligned_cols=81 Identities=16% Similarity=0.315 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||+++++++|+++|++||.|++|+|+.++. .|+++|||||+|.+.++|++||+.|||..|.++ .|+
T Consensus 106 ~~~rLfVGnLp~~~tEe~Lr~lF~~fG~I~sV~I~~D~~---TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR--~Ik 180 (612)
T TIGR01645 106 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA---TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR--NIK 180 (612)
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHccCCEEEEEEeecCC---CCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecc--eee
Confidence 368999999999999999999999999999999999872 256777999999999999999999999999987 899
Q ss_pred EEeecC
Q 026915 211 IDVTGN 216 (231)
Q Consensus 211 V~~ak~ 216 (231)
|.+..+
T Consensus 181 V~rp~~ 186 (612)
T TIGR01645 181 VGRPSN 186 (612)
T ss_pred eccccc
Confidence 987643
No 17
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3.3e-14 Score=123.95 Aligned_cols=83 Identities=23% Similarity=0.376 Sum_probs=76.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..+.|.|..||.+.|++||+.||+..|+|.+|+|++|| ..|++.||+||.|.++++|++|++.|||.+|... +|+
T Consensus 40 skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDK---itGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~K--TIK 114 (360)
T KOG0145|consen 40 SKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDK---ITGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNK--TIK 114 (360)
T ss_pred ccceeeeeecccccCHHHHHHHhhcccceeeeeeeecc---ccccccccceeeecChHHHHHHHhhhcceeeccc--eEE
Confidence 35779999999999999999999999999999999998 3478888999999999999999999999999865 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+||++..
T Consensus 115 VSyARPSs 122 (360)
T KOG0145|consen 115 VSYARPSS 122 (360)
T ss_pred EEeccCCh
Confidence 99999754
No 18
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.52 E-value=3e-14 Score=131.01 Aligned_cols=87 Identities=21% Similarity=0.413 Sum_probs=77.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCce-ecCCcccE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKS-CCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~-l~g~~~~L 209 (231)
..-+|||+-||..++|+||+++|++||.|.+|.|++||. .|+++|||||.|.++++|.+|+.+||+.+ |.|...+|
T Consensus 33 ~~vKlfVgqIprt~sE~dlr~lFe~yg~V~einl~kDk~---t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pv 109 (510)
T KOG0144|consen 33 SAVKLFVGQIPRTASEKDLRELFEKYGNVYEINLIKDKS---TGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPV 109 (510)
T ss_pred hhhhheeccCCccccHHHHHHHHHHhCceeEEEeecccc---cCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcce
Confidence 467899999999999999999999999999999999983 36788899999999999999999999988 44446689
Q ss_pred EEEeecCCCCC
Q 026915 210 RIDVTGNLTGH 220 (231)
Q Consensus 210 ~V~~ak~~~~~ 220 (231)
.|.||..+..+
T Consensus 110 qvk~Ad~E~er 120 (510)
T KOG0144|consen 110 QVKYADGERER 120 (510)
T ss_pred eecccchhhhc
Confidence 99999876533
No 19
>KOG0114 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.52 E-value=8.2e-14 Score=106.35 Aligned_cols=86 Identities=19% Similarity=0.325 Sum_probs=76.0
Q ss_pred CCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee
Q 026915 123 SEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSC 202 (231)
Q Consensus 123 p~~~~p~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l 202 (231)
+...+||+.+..|||+|||+++|.|+..+||..||.|..|+|-..+.. .| .|||.|++..+|.+|++.|+|+.+
T Consensus 9 ~~~rlppevnriLyirNLp~~ITseemydlFGkyg~IrQIRiG~~k~T--rG----TAFVVYedi~dAk~A~dhlsg~n~ 82 (124)
T KOG0114|consen 9 QNIRLPPEVNRILYIRNLPFKITSEEMYDLFGKYGTIRQIRIGNTKET--RG----TAFVVYEDIFDAKKACDHLSGYNV 82 (124)
T ss_pred CCCCCChhhheeEEEecCCccccHHHHHHHhhcccceEEEEecCccCc--Cc----eEEEEehHhhhHHHHHHHhccccc
Confidence 344677888999999999999999999999999999999999988732 24 899999999999999999999999
Q ss_pred cCCcccEEEEeecC
Q 026915 203 CAKSVPIRIDVTGN 216 (231)
Q Consensus 203 ~g~~~~L~V~~ak~ 216 (231)
.+. .|.|-|-..
T Consensus 83 ~~r--yl~vlyyq~ 94 (124)
T KOG0114|consen 83 DNR--YLVVLYYQP 94 (124)
T ss_pred CCc--eEEEEecCH
Confidence 976 888887654
No 20
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.52 E-value=4.6e-14 Score=136.07 Aligned_cols=78 Identities=28% Similarity=0.466 Sum_probs=71.4
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEEe
Q 026915 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRIDV 213 (231)
Q Consensus 134 tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~ 213 (231)
+|||+|||.++||++|+++|++||.|.+|+|+.++. .++++|||||+|.+.++|++|++.|++..|.++ .|+|.|
T Consensus 2 sl~VgnLp~~vte~~L~~~F~~~G~v~~v~v~~d~~---t~~s~G~afV~F~~~~~A~~Al~~ln~~~i~gk--~i~i~~ 76 (562)
T TIGR01628 2 SLYVGDLDPDVTEAKLYDLFKPFGPVLSVRVCRDSV---TRRSLGYGYVNFQNPADAERALETMNFKRLGGK--PIRIMW 76 (562)
T ss_pred eEEEeCCCCCCCHHHHHHHHHhcCCEEEEEEEecCC---CCCcceEEEEEECCHHHHHHHHHHhCCCEECCe--eEEeec
Confidence 799999999999999999999999999999999973 245667999999999999999999999999976 999999
Q ss_pred ecC
Q 026915 214 TGN 216 (231)
Q Consensus 214 ak~ 216 (231)
+..
T Consensus 77 s~~ 79 (562)
T TIGR01628 77 SQR 79 (562)
T ss_pred ccc
Confidence 853
No 21
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=99.50 E-value=1.2e-13 Score=129.53 Aligned_cols=82 Identities=16% Similarity=0.258 Sum_probs=73.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+|||.++++++|+++|++||.|.+|+|+.++. .|+++|||||+|.+.++|++||. |+|..+.+. +|.
T Consensus 88 ~~~~l~V~nlp~~~~~~~l~~~F~~~G~v~~v~i~~d~~---~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~--~i~ 161 (457)
T TIGR01622 88 DDRTVFVLQLALKARERDLYEFFSKVGKVRDVQCIKDRN---SRRSKGVAYVEFYDVESVIKALA-LTGQMLLGR--PII 161 (457)
T ss_pred CCcEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeecCC---CCCcceEEEEEECCHHHHHHHHH-hCCCEECCe--eeE
Confidence 478999999999999999999999999999999999862 25677799999999999999996 999999977 899
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|++++...
T Consensus 162 v~~~~~~~ 169 (457)
T TIGR01622 162 VQSSQAEK 169 (457)
T ss_pred Eeecchhh
Confidence 99876543
No 22
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.49 E-value=1.2e-13 Score=133.63 Aligned_cols=75 Identities=21% Similarity=0.322 Sum_probs=69.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC--CCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPF--VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~f--G~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
.++|||+|||+++++++|+++|++| |.|.+|+++++ ||||+|+++++|++|++.|||..|.++ .|
T Consensus 233 ~k~LfVgNL~~~~tee~L~~~F~~f~~G~I~rV~~~rg-----------fAFVeF~s~e~A~kAi~~lnG~~i~Gr--~I 299 (578)
T TIGR01648 233 VKILYVRNLMTTTTEEIIEKSFSEFKPGKVERVKKIRD-----------YAFVHFEDREDAVKAMDELNGKELEGS--EI 299 (578)
T ss_pred ccEEEEeCCCCCCCHHHHHHHHHhcCCCceEEEEeecC-----------eEEEEeCCHHHHHHHHHHhCCCEECCE--EE
Confidence 5789999999999999999999999 99999987644 999999999999999999999999987 99
Q ss_pred EEEeecCCCC
Q 026915 210 RIDVTGNLTG 219 (231)
Q Consensus 210 ~V~~ak~~~~ 219 (231)
+|+||++..+
T Consensus 300 ~V~~Akp~~~ 309 (578)
T TIGR01648 300 EVTLAKPVDK 309 (578)
T ss_pred EEEEccCCCc
Confidence 9999987543
No 23
>KOG0125 consensus Ataxin 2-binding protein (RRM superfamily) [General function prediction only]
Probab=99.48 E-value=1.6e-13 Score=122.59 Aligned_cols=81 Identities=20% Similarity=0.272 Sum_probs=73.3
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
+..++|+|.|||+...|.||+.+|++||.|.+|.|+.++.+ +|||+||+|++.++|++|-+.|||..+.|+ .|
T Consensus 94 ~~pkRLhVSNIPFrFRdpDL~aMF~kfG~VldVEIIfNERG-----SKGFGFVTmen~~dadRARa~LHgt~VEGR--kI 166 (376)
T KOG0125|consen 94 DTPKRLHVSNIPFRFRDPDLRAMFEKFGKVLDVEIIFNERG-----SKGFGFVTMENPADADRARAELHGTVVEGR--KI 166 (376)
T ss_pred CCCceeEeecCCccccCccHHHHHHhhCceeeEEEEeccCC-----CCccceEEecChhhHHHHHHHhhcceeece--EE
Confidence 34589999999999999999999999999999999998732 566999999999999999999999999987 89
Q ss_pred EEEeecCC
Q 026915 210 RIDVTGNL 217 (231)
Q Consensus 210 ~V~~ak~~ 217 (231)
.|..|..+
T Consensus 167 EVn~ATar 174 (376)
T KOG0125|consen 167 EVNNATAR 174 (376)
T ss_pred EEeccchh
Confidence 99888654
No 24
>KOG0144 consensus RNA-binding protein CUGBP1/BRUNO (RRM superfamily) [RNA processing and modification]
Probab=99.47 E-value=3.7e-14 Score=130.41 Aligned_cols=85 Identities=22% Similarity=0.309 Sum_probs=76.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCce-ecCCcccEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKS-CCAKSVPIR 210 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~-l~g~~~~L~ 210 (231)
..+|||+-|+..+||.|+++||++||.|.+|.|+++..+ .++|||||.|.+++.|..||+.|||.. +.|.+.+|.
T Consensus 124 e~KLFvg~lsK~~te~evr~iFs~fG~Ied~~ilrd~~~----~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLV 199 (510)
T KOG0144|consen 124 ERKLFVGMLSKQCTENEVREIFSRFGHIEDCYILRDPDG----LSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLV 199 (510)
T ss_pred chhhhhhhccccccHHHHHHHHHhhCccchhhheecccc----cccceeEEEEehHHHHHHHHHhhccceeeccCCCceE
Confidence 589999999999999999999999999999999999754 455599999999999999999999977 777788999
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|.||...+.+
T Consensus 200 VkFADtqkdk 209 (510)
T KOG0144|consen 200 VKFADTQKDK 209 (510)
T ss_pred EEecccCCCc
Confidence 9999887644
No 25
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=99.47 E-value=2.4e-13 Score=131.18 Aligned_cols=81 Identities=17% Similarity=0.301 Sum_probs=74.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||+||+.++++++|+++|++||.|++|+++.+.. |.++|||||+|.+.++|++|+..|||..+.++ +|.
T Consensus 284 ~~~~l~V~nl~~~~~~~~L~~~F~~~G~i~~~~i~~d~~----g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk--~l~ 357 (562)
T TIGR01628 284 QGVNLYVKNLDDTVTDEKLRELFSECGEITSAKVMLDEK----GVSRGFGFVCFSNPEEANRAVTEMHGRMLGGK--PLY 357 (562)
T ss_pred CCCEEEEeCCCCccCHHHHHHHHHhcCCeEEEEEEECCC----CCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCc--eeE
Confidence 367899999999999999999999999999999999854 45666999999999999999999999999977 999
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|.||+..
T Consensus 358 V~~a~~k 364 (562)
T TIGR01628 358 VALAQRK 364 (562)
T ss_pred EEeccCc
Confidence 9999754
No 26
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=99.47 E-value=2e-13 Score=132.12 Aligned_cols=82 Identities=22% Similarity=0.265 Sum_probs=70.9
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc
Q 026915 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP 208 (231)
Q Consensus 129 ~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~ 208 (231)
++..++|||+|||++++|++|+++|++||.|.+|+|+.+.+ |+++|||||+|.+.++|++||+.||++.|... +.
T Consensus 55 p~~~~~lFVgnLp~~~tEd~L~~~F~~~G~I~~vrl~~D~s----G~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~G-r~ 129 (578)
T TIGR01648 55 PGRGCEVFVGKIPRDLYEDELVPLFEKAGPIYELRLMMDFS----GQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPG-RL 129 (578)
T ss_pred CCCCCEEEeCCCCCCCCHHHHHHHHHhhCCEEEEEEEECCC----CCccceEEEEeCCHHHHHHHHHHcCCCeecCC-cc
Confidence 34579999999999999999999999999999999999964 55666999999999999999999999998632 36
Q ss_pred EEEEeec
Q 026915 209 IRIDVTG 215 (231)
Q Consensus 209 L~V~~ak 215 (231)
|.|.++.
T Consensus 130 l~V~~S~ 136 (578)
T TIGR01648 130 LGVCISV 136 (578)
T ss_pred ccccccc
Confidence 6666653
No 27
>smart00362 RRM_2 RNA recognition motif.
Probab=99.47 E-value=3.8e-13 Score=92.04 Aligned_cols=71 Identities=30% Similarity=0.541 Sum_probs=63.4
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 134 tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+|||+|||.++++++|+++|++||.|..+++..++ +.++++|||+|.+.++|+.|++.|+|..+.+. .|+|
T Consensus 1 ~v~i~~l~~~~~~~~l~~~~~~~g~v~~~~~~~~~-----~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~--~i~v 71 (72)
T smart00362 1 TLFVGNLPPDVTEEDLKELFSKFGPIESVKIPKDT-----GKSKGFAFVEFESEEDAEKAIEALNGTKLGGR--PLRV 71 (72)
T ss_pred CEEEcCCCCcCCHHHHHHHHHhcCCEEEEEEecCC-----CCCCceEEEEeCCHHHHHHHHHHhCCcEECCE--EEee
Confidence 58999999999999999999999999999988775 34455999999999999999999999999865 6665
No 28
>PLN03121 nucleic acid binding protein; Provisional
Probab=99.47 E-value=2.6e-13 Score=117.71 Aligned_cols=75 Identities=17% Similarity=0.209 Sum_probs=67.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
..||||+||++.+||++|+++|+.||.|.+|+|+.+. +.++||||+|+++++|+.|+ .|+|..|.++ +|.|
T Consensus 5 g~TV~V~NLS~~tTE~dLrefFS~~G~I~~V~I~~D~------et~gfAfVtF~d~~aaetAl-lLnGa~l~d~--~I~I 75 (243)
T PLN03121 5 GYTAEVTNLSPKATEKDVYDFFSHCGAIEHVEIIRSG------EYACTAYVTFKDAYALETAV-LLSGATIVDQ--RVCI 75 (243)
T ss_pred ceEEEEecCCCCCCHHHHHHHHHhcCCeEEEEEecCC------CcceEEEEEECCHHHHHHHH-hcCCCeeCCc--eEEE
Confidence 5899999999999999999999999999999999884 23349999999999999999 6999999977 7887
Q ss_pred Eeec
Q 026915 212 DVTG 215 (231)
Q Consensus 212 ~~ak 215 (231)
.-..
T Consensus 76 t~~~ 79 (243)
T PLN03121 76 TRWG 79 (243)
T ss_pred EeCc
Confidence 7654
No 29
>KOG0149 consensus Predicted RNA-binding protein SEB4 (RRM superfamily) [General function prediction only]
Probab=99.47 E-value=1.4e-13 Score=118.13 Aligned_cols=78 Identities=17% Similarity=0.237 Sum_probs=65.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
-++|||+||+|++..++|++.|++||+|+++.|+.|+. .|++|||+||+|.+.+.|++|++.-+ -.|+|+...+.|
T Consensus 12 ~TKifVggL~w~T~~~~l~~yFeqfGeI~eavvitd~~---t~rskGyGfVTf~d~~aa~rAc~dp~-piIdGR~aNcnl 87 (247)
T KOG0149|consen 12 FTKIFVGGLAWETHKETLRRYFEQFGEIVEAVVITDKN---TGRSKGYGFVTFRDAEAATRACKDPN-PIIDGRKANCNL 87 (247)
T ss_pred EEEEEEcCcccccchHHHHHHHHHhCceEEEEEEeccC---CccccceeeEEeecHHHHHHHhcCCC-Ccccccccccch
Confidence 47899999999999999999999999999999999983 37788899999999999999986443 457777444444
Q ss_pred Ee
Q 026915 212 DV 213 (231)
Q Consensus 212 ~~ 213 (231)
.+
T Consensus 88 A~ 89 (247)
T KOG0149|consen 88 AS 89 (247)
T ss_pred hh
Confidence 44
No 30
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.46 E-value=3.9e-13 Score=127.97 Aligned_cols=77 Identities=18% Similarity=0.327 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCC-CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 131 ASSTLFVEGLPS-DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~-~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
++++|||+|||+ ++|+++|+++|+.||.|.+|+|+.++ +| ||||+|.+.++|+.||..|||..|.++ +|
T Consensus 274 ~~~~l~v~nL~~~~vt~~~L~~lF~~yG~V~~vki~~~~----~g----~afV~f~~~~~A~~Ai~~lng~~l~g~--~l 343 (481)
T TIGR01649 274 PGSVLMVSGLHQEKVNCDRLFNLFCVYGNVERVKFMKNK----KE----TALIEMADPYQAQLALTHLNGVKLFGK--PL 343 (481)
T ss_pred CCCEEEEeCCCCCCCCHHHHHHHHHhcCCeEEEEEEeCC----CC----EEEEEECCHHHHHHHHHHhCCCEECCc--eE
Confidence 478999999998 69999999999999999999999874 13 999999999999999999999999987 99
Q ss_pred EEEeecCC
Q 026915 210 RIDVTGNL 217 (231)
Q Consensus 210 ~V~~ak~~ 217 (231)
+|++++..
T Consensus 344 ~v~~s~~~ 351 (481)
T TIGR01649 344 RVCPSKQQ 351 (481)
T ss_pred EEEEcccc
Confidence 99999754
No 31
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=99.45 E-value=3.9e-13 Score=113.03 Aligned_cols=79 Identities=32% Similarity=0.524 Sum_probs=72.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.++|||+|||+++++++|+++|.+||.|..|++..++ ..|.++|||||+|.+.++|..|+..++|..+.++ .|+|
T Consensus 115 ~~~l~v~nL~~~~~~~~l~~~F~~~g~~~~~~~~~d~---~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~--~~~v 189 (306)
T COG0724 115 NNTLFVGNLPYDVTEEDLRELFKKFGPVKRVRLVRDR---ETGKSRGFAFVEFESEESAEKAIEELNGKELEGR--PLRV 189 (306)
T ss_pred CceEEEeCCCCCCCHHHHHHHHHhcCceeEEEeeecc---ccCccCceEEEEecCHHHHHHHHHHcCCCeECCc--eeEe
Confidence 5999999999999999999999999999999999986 2256777999999999999999999999999987 9999
Q ss_pred Eeec
Q 026915 212 DVTG 215 (231)
Q Consensus 212 ~~ak 215 (231)
+++.
T Consensus 190 ~~~~ 193 (306)
T COG0724 190 QKAQ 193 (306)
T ss_pred eccc
Confidence 9965
No 32
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=1.1e-13 Score=115.37 Aligned_cols=78 Identities=22% Similarity=0.399 Sum_probs=69.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+++|||+|||.++.|.||++||.+||.|.+|.|..... +..||||+|+++.+|+.||..-+|+.+++. .|+|
T Consensus 6 ~~~iyvGNLP~diRekeieDlFyKyg~i~~ieLK~r~g------~ppfafVeFEd~RDAeDAiygRdGYdydg~--rLRV 77 (241)
T KOG0105|consen 6 SRRIYVGNLPGDIREKEIEDLFYKYGRIREIELKNRPG------PPPFAFVEFEDPRDAEDAIYGRDGYDYDGC--RLRV 77 (241)
T ss_pred cceEEecCCCcchhhccHHHHHhhhcceEEEEeccCCC------CCCeeEEEecCccchhhhhhcccccccCcc--eEEE
Confidence 68999999999999999999999999999998765531 223999999999999999999999999987 9999
Q ss_pred EeecCC
Q 026915 212 DVTGNL 217 (231)
Q Consensus 212 ~~ak~~ 217 (231)
+|++.-
T Consensus 78 Efprgg 83 (241)
T KOG0105|consen 78 EFPRGG 83 (241)
T ss_pred EeccCC
Confidence 999754
No 33
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=99.45 E-value=3.2e-13 Score=128.56 Aligned_cols=75 Identities=16% Similarity=0.231 Sum_probs=68.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHh--cCceecCCcccE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL--QVKSCCAKSVPI 209 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L--~G~~l~g~~~~L 209 (231)
+++|||+|||++++|++|+++|++||.|.+|+|++++ | ||||+|++.++|++|++.| ++..|.++ +|
T Consensus 2 s~vv~V~nLp~~~te~~L~~~f~~fG~V~~v~i~~~k-----~----~afVef~~~e~A~~Ai~~~~~~~~~l~g~--~l 70 (481)
T TIGR01649 2 SPVVHVRNLPQDVVEADLVEALIPFGPVSYVMMLPGK-----R----QALVEFEDEESAKACVNFATSVPIYIRGQ--PA 70 (481)
T ss_pred ccEEEEcCCCCCCCHHHHHHHHHhcCCeeEEEEECCC-----C----EEEEEeCchHHHHHHHHHhhcCCceEcCe--EE
Confidence 7999999999999999999999999999999998754 3 9999999999999999875 67788877 99
Q ss_pred EEEeecCC
Q 026915 210 RIDVTGNL 217 (231)
Q Consensus 210 ~V~~ak~~ 217 (231)
+|+|+...
T Consensus 71 ~v~~s~~~ 78 (481)
T TIGR01649 71 FFNYSTSQ 78 (481)
T ss_pred EEEecCCc
Confidence 99999653
No 34
>KOG0113 consensus U1 small nuclear ribonucleoprotein (RRM superfamily) [RNA processing and modification]
Probab=99.45 E-value=5.2e-13 Score=118.05 Aligned_cols=85 Identities=24% Similarity=0.287 Sum_probs=77.3
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc
Q 026915 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP 208 (231)
Q Consensus 129 ~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~ 208 (231)
.|+-+||||.-|+.+++|.+|+..|+.||.|+.|+||.++ -.|+|+|||||+|++..+...|.+..+|.+|++. .
T Consensus 98 gDPy~TLFv~RLnydT~EskLrreF~~YG~IkrirlV~d~---vTgkskGYAFIeye~erdm~~AYK~adG~~Idgr--r 172 (335)
T KOG0113|consen 98 GDPYKTLFVARLNYDTSESKLRREFEKYGPIKRIRLVRDK---VTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGR--R 172 (335)
T ss_pred CCccceeeeeeccccccHHHHHHHHHhcCcceeEEEeeec---ccCCccceEEEEeccHHHHHHHHHhccCceecCc--E
Confidence 3568999999999999999999999999999999999997 2377888999999999999999999999999987 8
Q ss_pred EEEEeecCCC
Q 026915 209 IRIDVTGNLT 218 (231)
Q Consensus 209 L~V~~ak~~~ 218 (231)
|.|.+-+..+
T Consensus 173 i~VDvERgRT 182 (335)
T KOG0113|consen 173 ILVDVERGRT 182 (335)
T ss_pred EEEEeccccc
Confidence 8888877654
No 35
>PLN03213 repressor of silencing 3; Provisional
Probab=99.44 E-value=3.1e-13 Score=126.32 Aligned_cols=77 Identities=18% Similarity=0.317 Sum_probs=69.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCH--HHHHHHHHHhcCceecCCcccE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP--AHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~--~~A~~Al~~L~G~~l~g~~~~L 209 (231)
..+|||+||++++++++|+.+|+.||.|.+|.|++.. | +|||||+|.+. .++.+||..|||..+.|+ .|
T Consensus 10 gMRIYVGNLSydVTEDDLravFSeFGsVkdVEIpRET-----G--RGFAFVEMssdddaEeeKAISaLNGAEWKGR--~L 80 (759)
T PLN03213 10 GVRLHVGGLGESVGRDDLLKIFSPMGTVDAVEFVRTK-----G--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGG--RL 80 (759)
T ss_pred ceEEEEeCCCCCCCHHHHHHHHHhcCCeeEEEEeccc-----C--CceEEEEecCCcHHHHHHHHHHhcCCeecCc--ee
Confidence 5789999999999999999999999999999999443 3 45999999987 789999999999999988 99
Q ss_pred EEEeecCC
Q 026915 210 RIDVTGNL 217 (231)
Q Consensus 210 ~V~~ak~~ 217 (231)
+|+-|+..
T Consensus 81 KVNKAKP~ 88 (759)
T PLN03213 81 RLEKAKEH 88 (759)
T ss_pred EEeeccHH
Confidence 99999864
No 36
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.43 E-value=2.1e-13 Score=125.95 Aligned_cols=76 Identities=20% Similarity=0.325 Sum_probs=71.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
-+.|||+||+.++|||.|+++|++||.|..|+.++| ||||.|.++++|.+||+.+||+.|++. .|.|
T Consensus 259 VKvLYVRNL~~~tTeE~lk~~F~~~G~veRVkk~rD-----------YaFVHf~eR~davkAm~~~ngkeldG~--~iEv 325 (506)
T KOG0117|consen 259 VKVLYVRNLMESTTEETLKKLFNEFGKVERVKKPRD-----------YAFVHFAEREDAVKAMKETNGKELDGS--PIEV 325 (506)
T ss_pred eeeeeeeccchhhhHHHHHHHHHhccceEEeecccc-----------eeEEeecchHHHHHHHHHhcCceecCc--eEEE
Confidence 467999999999999999999999999999998877 999999999999999999999999988 9999
Q ss_pred EeecCCCCC
Q 026915 212 DVTGNLTGH 220 (231)
Q Consensus 212 ~~ak~~~~~ 220 (231)
.+||+..++
T Consensus 326 tLAKP~~k~ 334 (506)
T KOG0117|consen 326 TLAKPVDKK 334 (506)
T ss_pred EecCChhhh
Confidence 999987643
No 37
>KOG0145 consensus RNA-binding protein ELAV/HU (RRM superfamily) [RNA processing and modification]
Probab=99.42 E-value=8.4e-14 Score=121.41 Aligned_cols=167 Identities=17% Similarity=0.298 Sum_probs=117.5
Q ss_pred CCCCCCCcccCcccccc----cccccCCCCCCCcccccchhhh-hccCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCcc
Q 026915 29 DYDVPSGHELSSYYTRD----DDRGALRGMRDTDSLGASYDRY-LRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIV 100 (231)
Q Consensus 29 ~~~~~~~~~~~~y~~~~----~~r~~~~~~~~~~~~~~~~d~~-~~~~~--~~s~~~g-~~~r~~~Gg~~g~~~~~~~~~ 100 (231)
|-+....+.+.+||||. ++|..|.|+.++++..-.-|.- .+|-| |+.+-.. .+-+++- -++|.-+-+
T Consensus 36 ~t~~skTNLIvNYLPQ~MTqdE~rSLF~SiGeiEScKLvRDKitGqSLGYGFVNYv~p~DAe~Ain-tlNGLrLQ~---- 110 (360)
T KOG0145|consen 36 DTDESKTNLIVNYLPQNMTQDELRSLFGSIGEIESCKLVRDKITGQSLGYGFVNYVRPKDAEKAIN-TLNGLRLQN---- 110 (360)
T ss_pred CcCcccceeeeeecccccCHHHHHHHhhcccceeeeeeeeccccccccccceeeecChHHHHHHHh-hhcceeecc----
Confidence 44557788999999975 8899999999998876444432 13322 2222222 2223332 333322221
Q ss_pred ccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEE
Q 026915 101 GIGGMDPGPSAKDRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILC 180 (231)
Q Consensus 101 ~~gg~~~~~~~~~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~a 180 (231)
+.+..+-.+|....- ....|||.+||...|..||+.||++||.|...||+.+.. .|.++|.+
T Consensus 111 -------------KTIKVSyARPSs~~I--k~aNLYvSGlPktMtqkelE~iFs~fGrIItSRiL~dqv---tg~srGVg 172 (360)
T KOG0145|consen 111 -------------KTIKVSYARPSSDSI--KDANLYVSGLPKTMTQKELEQIFSPFGRIITSRILVDQV---TGLSRGVG 172 (360)
T ss_pred -------------ceEEEEeccCChhhh--cccceEEecCCccchHHHHHHHHHHhhhhhhhhhhhhcc---cceeccee
Confidence 122222223322222 247899999999999999999999999999989888872 26677799
Q ss_pred EEEeCCHHHHHHHHHHhcCceecCCcccEEEEeecCCC
Q 026915 181 FVDFVSPAHAATAMDALQVKSCCAKSVPIRIDVTGNLT 218 (231)
Q Consensus 181 FVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~ak~~~ 218 (231)
||.|+.+.+|++||..|||.+..+..-+|.|.||.++.
T Consensus 173 FiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannPs 210 (360)
T KOG0145|consen 173 FIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNPS 210 (360)
T ss_pred EEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCcc
Confidence 99999999999999999999988776799999998774
No 38
>smart00360 RRM RNA recognition motif.
Probab=99.42 E-value=9.3e-13 Score=89.68 Aligned_cols=71 Identities=31% Similarity=0.528 Sum_probs=62.3
Q ss_pred EcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEE
Q 026915 137 VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRID 212 (231)
Q Consensus 137 VgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~ 212 (231)
|+|||..+++++|+++|++||.|.++++..++. .++++|+|||+|.+.++|..|++.|++..+.+. .|+|+
T Consensus 1 i~~l~~~~~~~~l~~~f~~~g~v~~~~i~~~~~---~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~--~~~v~ 71 (71)
T smart00360 1 VGNLPPDVTEEELRELFSKFGKIESVRLVRDKD---TGKSKGFAFVEFESEEDAEKALEALNGKELDGR--PLKVK 71 (71)
T ss_pred CCCCCcccCHHHHHHHHHhhCCEeEEEEEeCCC---CCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCc--EEEeC
Confidence 679999999999999999999999999988762 245667999999999999999999999999865 67663
No 39
>KOG0130 consensus RNA-binding protein RBM8/Tsunagi (RRM superfamily) [General function prediction only]
Probab=99.42 E-value=4.3e-13 Score=106.88 Aligned_cols=81 Identities=17% Similarity=0.244 Sum_probs=75.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..+.|||.++..++||++|.+.|..||+|+.+.|..++ +.|-.||||+|+|++.++|++|++.|||..|.++ +|.
T Consensus 71 EGwIi~VtgvHeEatEedi~d~F~dyGeiKNihLNLDR---RtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q--~v~ 145 (170)
T KOG0130|consen 71 EGWIIFVTGVHEEATEEDIHDKFADYGEIKNIHLNLDR---RTGYVKGYALVEYETLKEAQAAIDALNGAELLGQ--NVS 145 (170)
T ss_pred eeEEEEEeccCcchhHHHHHHHHhhcccccceeecccc---ccccccceeeeehHhHHHHHHHHHhccchhhhCC--cee
Confidence 37899999999999999999999999999999999987 4578888999999999999999999999999988 899
Q ss_pred EEeecC
Q 026915 211 IDVTGN 216 (231)
Q Consensus 211 V~~ak~ 216 (231)
|.|+..
T Consensus 146 VDw~Fv 151 (170)
T KOG0130|consen 146 VDWCFV 151 (170)
T ss_pred EEEEEe
Confidence 999853
No 40
>KOG0111 consensus Cyclophilin-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.42 E-value=1.8e-13 Score=116.89 Aligned_cols=85 Identities=24% Similarity=0.428 Sum_probs=77.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC--CCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE--SRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP 208 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k--~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~ 208 (231)
..+||||++|..+|+|.-|...|-+||.|+.|.++.+. .+|++ |+||+|+..++|..||+.||+.+|.++ +
T Consensus 9 ~KrtlYVGGladeVtekvLhaAFIPFGDI~dIqiPlDyesqkHRg-----FgFVefe~aEDAaaAiDNMnesEL~Gr--t 81 (298)
T KOG0111|consen 9 QKRTLYVGGLADEVTEKVLHAAFIPFGDIKDIQIPLDYESQKHRG-----FGFVEFEEAEDAAAAIDNMNESELFGR--T 81 (298)
T ss_pred cceeEEeccchHHHHHHHHHhccccccchhhcccccchhcccccc-----eeEEEeeccchhHHHhhcCchhhhcce--e
Confidence 46899999999999999999999999999999999987 44554 999999999999999999999999987 9
Q ss_pred EEEEeecCCCCCCC
Q 026915 209 IRIDVTGNLTGHVR 222 (231)
Q Consensus 209 L~V~~ak~~~~~~~ 222 (231)
|+|.||++.+-+.+
T Consensus 82 irVN~AkP~kikeg 95 (298)
T KOG0111|consen 82 IRVNLAKPEKIKEG 95 (298)
T ss_pred EEEeecCCccccCC
Confidence 99999999875544
No 41
>KOG0126 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.41 E-value=3.3e-14 Score=118.13 Aligned_cols=81 Identities=19% Similarity=0.381 Sum_probs=74.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.+.-|||+|||++.||.||.-+|++||+|+.|.|+.++. .|+++||||+.|++..+..-|++.|||.+|.++ +|+
T Consensus 34 dsA~Iyiggl~~~LtEgDil~VFSqyGe~vdinLiRDk~---TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gR--tir 108 (219)
T KOG0126|consen 34 DSAYIYIGGLPYELTEGDILCVFSQYGEIVDINLIRDKK---TGKSKGFAFLCYEDQRSTILAVDNLNGIKILGR--TIR 108 (219)
T ss_pred cceEEEECCCcccccCCcEEEEeeccCceEEEEEEecCC---CCcccceEEEEecCccceEEEEeccCCceecce--eEE
Confidence 378899999999999999999999999999999999983 388888999999999999999999999999987 999
Q ss_pred EEeecC
Q 026915 211 IDVTGN 216 (231)
Q Consensus 211 V~~ak~ 216 (231)
|.-...
T Consensus 109 VDHv~~ 114 (219)
T KOG0126|consen 109 VDHVSN 114 (219)
T ss_pred eeeccc
Confidence 987643
No 42
>KOG0108 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA15 [RNA processing and modification]
Probab=99.40 E-value=5e-13 Score=125.36 Aligned_cols=82 Identities=23% Similarity=0.358 Sum_probs=77.0
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRID 212 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~ 212 (231)
+.|||+|||++++|++|.++|+..|.|.+++++.|+ .+|+++||+|++|.+.++|+.|++.|||.++.++ +|+|.
T Consensus 19 ~~v~vgnip~~~se~~l~~~~~~~g~v~s~~~v~D~---~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr--~l~v~ 93 (435)
T KOG0108|consen 19 SSVFVGNIPYEGSEEQLLSIFSGVGPVLSFRLVYDR---ETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGR--KLRVN 93 (435)
T ss_pred cceEecCCCCcccHHHHHHHHhccCccceeeecccc---cCCCcCceeeEecCchhhHHHHHHhcCCcccCCc--eEEee
Confidence 889999999999999999999999999999999998 3478888999999999999999999999999987 99999
Q ss_pred eecCCCC
Q 026915 213 VTGNLTG 219 (231)
Q Consensus 213 ~ak~~~~ 219 (231)
|+...+.
T Consensus 94 ~~~~~~~ 100 (435)
T KOG0108|consen 94 YASNRKN 100 (435)
T ss_pred cccccch
Confidence 9987654
No 43
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=99.40 E-value=3e-12 Score=87.97 Aligned_cols=74 Identities=30% Similarity=0.548 Sum_probs=65.6
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEEe
Q 026915 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRIDV 213 (231)
Q Consensus 134 tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~ 213 (231)
+|+|+|||..+++++|+++|+.||.|..+.+..++.. .++++|||+|.+.++|..|++.+++..+.+. .|.|+|
T Consensus 1 ~i~i~~l~~~~~~~~i~~~~~~~g~i~~~~~~~~~~~----~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~--~~~v~~ 74 (74)
T cd00590 1 TLFVGNLPPDVTEEDLRELFSKFGKVESVRIVRDKDT----KSKGFAFVEFEDEEDAEKALEALNGKELGGR--PLRVEF 74 (74)
T ss_pred CEEEeCCCCccCHHHHHHHHHhcCCEEEEEEeeCCCC----CcceEEEEEECCHHHHHHHHHHhCCCeECCe--EEEEeC
Confidence 4899999999999999999999999999999987632 3445999999999999999999999998866 787764
No 44
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.37 E-value=5.1e-13 Score=117.91 Aligned_cols=72 Identities=19% Similarity=0.341 Sum_probs=68.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRID 212 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~ 212 (231)
-+|||+|||.++++.+|+.||++||+|++|.|+++ |+||..++...|+.||..|||++|.+- .|+|+
T Consensus 3 ~KLFIGNLp~~~~~~elr~lFe~ygkVlECDIvKN-----------YgFVHiEdktaaedairNLhgYtLhg~--nInVe 69 (346)
T KOG0109|consen 3 VKLFIGNLPREATEQELRSLFEQYGKVLECDIVKN-----------YGFVHIEDKTAAEDAIRNLHGYTLHGV--NINVE 69 (346)
T ss_pred cchhccCCCcccchHHHHHHHHhhCceEeeeeecc-----------cceEEeecccccHHHHhhcccceecce--EEEEE
Confidence 57999999999999999999999999999999998 999999999999999999999999976 89999
Q ss_pred eecCC
Q 026915 213 VTGNL 217 (231)
Q Consensus 213 ~ak~~ 217 (231)
-++++
T Consensus 70 aSksK 74 (346)
T KOG0109|consen 70 ASKSK 74 (346)
T ss_pred ecccc
Confidence 88776
No 45
>KOG0117 consensus Heterogeneous nuclear ribonucleoprotein R (RRM superfamily) [RNA processing and modification]
Probab=99.36 E-value=3.7e-12 Score=117.72 Aligned_cols=81 Identities=23% Similarity=0.306 Sum_probs=73.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k-~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
-.+-|||+.||.++.|+||..||++.|.|-++||+.++ + |+.+|||||.|-+.++|++||+.||+++|.. ++.|
T Consensus 82 ~G~EVfvGkIPrD~~EdeLvplfEkiG~I~elRLMmD~~s----G~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~-GK~i 156 (506)
T KOG0117|consen 82 RGCEVFVGKIPRDVFEDELVPLFEKIGKIYELRLMMDPFS----GDNRGYAFVTFCTKEEAQEAIKELNNYEIRP-GKLL 156 (506)
T ss_pred CCceEEecCCCccccchhhHHHHHhccceeeEEEeecccC----CCCcceEEEEeecHHHHHHHHHHhhCccccC-CCEe
Confidence 47999999999999999999999999999999999997 4 6666799999999999999999999999986 4678
Q ss_pred EEEeecC
Q 026915 210 RIDVTGN 216 (231)
Q Consensus 210 ~V~~ak~ 216 (231)
.|+.+..
T Consensus 157 gvc~Sva 163 (506)
T KOG0117|consen 157 GVCVSVA 163 (506)
T ss_pred EEEEeee
Confidence 8877754
No 46
>KOG4207 consensus Predicted splicing factor, SR protein superfamily [RNA processing and modification]
Probab=99.35 E-value=1.1e-12 Score=111.11 Aligned_cols=81 Identities=17% Similarity=0.255 Sum_probs=73.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.-.+|-|-||.+-++.++|+.+|++||.|-+|.|+.++- .++++|||||.|.+..+|+.|+++|+|..|+++ .|+
T Consensus 12 gm~SLkVdNLTyRTspd~LrrvFekYG~vgDVyIPrdr~---Tr~sRgFaFVrf~~k~daedA~damDG~~ldgR--elr 86 (256)
T KOG4207|consen 12 GMTSLKVDNLTYRTSPDDLRRVFEKYGRVGDVYIPRDRY---TRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGR--ELR 86 (256)
T ss_pred cceeEEecceeccCCHHHHHHHHHHhCcccceecccccc---cccccceeEEEeeecchHHHHHHhhcceeeccc--eee
Confidence 357899999999999999999999999999999999981 245666999999999999999999999999987 999
Q ss_pred EEeecC
Q 026915 211 IDVTGN 216 (231)
Q Consensus 211 V~~ak~ 216 (231)
|++|+-
T Consensus 87 Vq~ary 92 (256)
T KOG4207|consen 87 VQMARY 92 (256)
T ss_pred ehhhhc
Confidence 999974
No 47
>KOG0148 consensus Apoptosis-promoting RNA-binding protein TIA-1/TIAR (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.33 E-value=3.4e-12 Score=111.78 Aligned_cols=82 Identities=17% Similarity=0.282 Sum_probs=74.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.-.+||+-|..+++.++|++.|.+||+|.+++|++|.. .+++|||+||.|.++++|++||..|||.=|..+ .||-
T Consensus 62 hfhvfvgdls~eI~~e~lr~aF~pFGevS~akvirD~~---T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R--~IRT 136 (321)
T KOG0148|consen 62 HFHVFVGDLSPEIDNEKLREAFAPFGEVSDAKVIRDMN---TGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRR--TIRT 136 (321)
T ss_pred ceeEEehhcchhcchHHHHHHhccccccccceEeeccc---CCcccceeEEeccchHHHHHHHHHhCCeeeccc--eeec
Confidence 35699999999999999999999999999999999973 367788999999999999999999999999976 9999
Q ss_pred EeecCCC
Q 026915 212 DVTGNLT 218 (231)
Q Consensus 212 ~~ak~~~ 218 (231)
.||..+.
T Consensus 137 NWATRKp 143 (321)
T KOG0148|consen 137 NWATRKP 143 (321)
T ss_pred cccccCc
Confidence 9995443
No 48
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=99.30 E-value=1.6e-11 Score=83.18 Aligned_cols=56 Identities=23% Similarity=0.527 Sum_probs=50.0
Q ss_pred HHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEEee
Q 026915 149 VAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRIDVT 214 (231)
Q Consensus 149 L~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~a 214 (231)
|.++|++||+|.++.+..++ ++ +|||+|.+.++|+.|++.|||..+.++ +|+|+||
T Consensus 1 L~~~f~~fG~V~~i~~~~~~----~~----~a~V~f~~~~~A~~a~~~l~~~~~~g~--~l~V~~a 56 (56)
T PF13893_consen 1 LYKLFSKFGEVKKIKIFKKK----RG----FAFVEFASVEDAQKAIEQLNGRQFNGR--PLKVSYA 56 (56)
T ss_dssp HHHHHTTTS-EEEEEEETTS----TT----EEEEEESSHHHHHHHHHHHTTSEETTE--EEEEEEE
T ss_pred ChHHhCCcccEEEEEEEeCC----CC----EEEEEECCHHHHHHHHHHhCCCEECCc--EEEEEEC
Confidence 68999999999999988775 13 999999999999999999999999976 9999997
No 49
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=99.30 E-value=6.9e-12 Score=107.20 Aligned_cols=82 Identities=22% Similarity=0.310 Sum_probs=71.7
Q ss_pred CCEEEEcCCCCCCCHHHHHH----hhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcc
Q 026915 132 SSTLFVEGLPSDCSRREVAH----IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSV 207 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~----lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~ 207 (231)
+.||||.||+..+..++|+. ||++||.|.+|...+.. +.+|-|||.|.+.+.|..|+.+|+|..+.+.
T Consensus 9 n~TlYInnLnekI~~~elkrsL~~LFsqfG~ildI~a~kt~------KmRGQA~VvFk~~~~As~A~r~l~gfpFygK-- 80 (221)
T KOG4206|consen 9 NGTLYINNLNEKIKKDELKRSLYLLFSQFGKILDISAFKTP------KMRGQAFVVFKETEAASAALRALQGFPFYGK-- 80 (221)
T ss_pred CceEeehhccccccHHHHHHHHHHHHHhhCCeEEEEecCCC------CccCceEEEecChhHHHHHHHHhcCCcccCc--
Confidence 55999999999999999988 99999999998766553 2333999999999999999999999999977
Q ss_pred cEEEEeecCCCCCC
Q 026915 208 PIRIDVTGNLTGHV 221 (231)
Q Consensus 208 ~L~V~~ak~~~~~~ 221 (231)
+++|+||++.....
T Consensus 81 ~mriqyA~s~sdii 94 (221)
T KOG4206|consen 81 PMRIQYAKSDSDII 94 (221)
T ss_pred hhheecccCccchh
Confidence 99999999876543
No 50
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.29 E-value=8.5e-12 Score=117.77 Aligned_cols=81 Identities=20% Similarity=0.374 Sum_probs=73.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++|.|+||||.|.+.+|+.+|+.||.|.+|.|+..+. |+..|||||.|.+..+|++||+.+||.+|.++ +|-
T Consensus 116 ~k~rLIIRNLPf~~k~~dLk~vFs~~G~V~Ei~IP~k~d----gklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR--~VA 189 (678)
T KOG0127|consen 116 PKWRLIIRNLPFKCKKPDLKNVFSNFGKVVEIVIPRKKD----GKLCGFAFVQFKEKKDAEKALEFFNGNKIDGR--PVA 189 (678)
T ss_pred ccceEEeecCCcccCcHHHHHHHhhcceEEEEEcccCCC----CCccceEEEEEeeHHHHHHHHHhccCceecCc--eeE
Confidence 368999999999999999999999999999999997753 33346999999999999999999999999987 999
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|.||-..
T Consensus 190 VDWAV~K 196 (678)
T KOG0127|consen 190 VDWAVDK 196 (678)
T ss_pred Eeeeccc
Confidence 9999653
No 51
>KOG0415 consensus Predicted peptidyl prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=99.26 E-value=1.1e-11 Score=112.05 Aligned_cols=83 Identities=18% Similarity=0.293 Sum_probs=76.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.+.|||.-|.+-+|+++|+-||+.||.|++|.|+.++ ..|.+.-||||+|++.++.++|.-.|++..|+.+ .|+
T Consensus 238 PeNVLFVCKLNPVTtDeDLeiIFSrFG~i~sceVIRD~---ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDr--RIH 312 (479)
T KOG0415|consen 238 PENVLFVCKLNPVTTDEDLEIIFSRFGKIVSCEVIRDR---KTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDR--RIH 312 (479)
T ss_pred CcceEEEEecCCcccccchhhHHhhcccceeeeEEecc---cccchhheeeeeecchhhHHHHHhhhcceeeccc--eEE
Confidence 36999999999999999999999999999999999997 3478888999999999999999999999999976 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|.|+.+-.
T Consensus 313 VDFSQSVs 320 (479)
T KOG0415|consen 313 VDFSQSVS 320 (479)
T ss_pred eehhhhhh
Confidence 99998654
No 52
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.26 E-value=1.1e-11 Score=103.15 Aligned_cols=80 Identities=18% Similarity=0.281 Sum_probs=71.7
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP 208 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k-~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~ 208 (231)
+...||||+||+..++++-|++||-+.|.|+.+++++++ .. ...|||||||.++++|+=|++.||..+|.++ +
T Consensus 7 nqd~tiyvgnld~kvs~~~l~EL~iqagpVv~i~iPkDrv~~----~~qGygF~Ef~~eedadYAikiln~VkLYgr--p 80 (203)
T KOG0131|consen 7 NQDATLYVGNLDEKVSEELLYELFIQAGPVVNLHIPKDRVTQ----KHQGYGFAEFRTEEDADYAIKILNMVKLYGR--P 80 (203)
T ss_pred CCCceEEEecCCHHHHHHHHHHHHHhcCceeeeecchhhhcc----cccceeEEEEechhhhHHHHHHHHHHHhcCc--e
Confidence 346899999999999999999999999999999999998 22 2233999999999999999999999999987 9
Q ss_pred EEEEeec
Q 026915 209 IRIDVTG 215 (231)
Q Consensus 209 L~V~~ak 215 (231)
|+|.-+.
T Consensus 81 Irv~kas 87 (203)
T KOG0131|consen 81 IRVNKAS 87 (203)
T ss_pred eEEEecc
Confidence 9998876
No 53
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=99.24 E-value=7.5e-11 Score=101.08 Aligned_cols=92 Identities=33% Similarity=0.460 Sum_probs=75.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC-c
Q 026915 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK-S 206 (231)
Q Consensus 129 ~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k-~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~-~ 206 (231)
++.-+||||.+||.++...||..||..|-++..+.|-... .++ -++-+|||+|.+...|..|+++|||.+++.+ .
T Consensus 31 ~~~VRTLFVSGLP~DvKpREiynLFR~f~GYEgslLK~Tsk~~~---~~~pvaFatF~s~q~A~aamnaLNGvrFDpE~~ 107 (284)
T KOG1457|consen 31 PGAVRTLFVSGLPNDVKPREIYNLFRRFHGYEGSLLKYTSKGDQ---VCKPVAFATFTSHQFALAAMNALNGVRFDPETG 107 (284)
T ss_pred ccccceeeeccCCcccCHHHHHHHhccCCCccceeeeeccCCCc---cccceEEEEecchHHHHHHHHHhcCeeeccccC
Confidence 3457999999999999999999999999998876554432 110 1344999999999999999999999999988 4
Q ss_pred ccEEEEeecCCCCCCCC
Q 026915 207 VPIRIDVTGNLTGHVRR 223 (231)
Q Consensus 207 ~~L~V~~ak~~~~~~~r 223 (231)
.+|+|++||++++..++
T Consensus 108 stLhiElAKSNtK~kr~ 124 (284)
T KOG1457|consen 108 STLHIELAKSNTKRKRR 124 (284)
T ss_pred ceeEeeehhcCcccccC
Confidence 58999999988765443
No 54
>KOG0127 consensus Nucleolar protein fibrillarin NOP77 (RRM superfamily) [RNA processing and modification]
Probab=99.19 E-value=6e-11 Score=112.12 Aligned_cols=80 Identities=21% Similarity=0.301 Sum_probs=69.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHh-----cC-ceecCC
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL-----QV-KSCCAK 205 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L-----~G-~~l~g~ 205 (231)
..||||+|||+++||++|.+.|++||.|..+.|+.++. .|.++|+|||.|.+...|.+||.+. .| +.|.++
T Consensus 292 ~~tVFvRNL~fD~tEEel~~~fskFG~v~ya~iV~~k~---T~~skGtAFv~Fkt~~~~~~ci~~Aspa~e~g~~ll~GR 368 (678)
T KOG0127|consen 292 GKTVFVRNLPFDTTEEELKEHFSKFGEVKYAIIVKDKD---TGHSKGTAFVKFKTQIAAQNCIEAASPASEDGSVLLDGR 368 (678)
T ss_pred cceEEEecCCccccHHHHHHHHHhhccceeEEEEeccC---CCCcccceEEEeccHHHHHHHHHhcCccCCCceEEEecc
Confidence 58999999999999999999999999999999999982 2556669999999999999999877 34 567766
Q ss_pred cccEEEEeecC
Q 026915 206 SVPIRIDVTGN 216 (231)
Q Consensus 206 ~~~L~V~~ak~ 216 (231)
.|+|..|-.
T Consensus 369 --~Lkv~~Av~ 377 (678)
T KOG0127|consen 369 --LLKVTLAVT 377 (678)
T ss_pred --EEeeeeccc
Confidence 888888754
No 55
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.18 E-value=3.2e-11 Score=105.77 Aligned_cols=83 Identities=20% Similarity=0.354 Sum_probs=75.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.|+|||-.||.+..+.||..+|-+||.|++.++..|+- ..++|.|+||.|+++.+|+.||.+|||.+|.-+ .|+
T Consensus 284 eGCNlFIYHLPQEFgDaEliQmF~PFGhivSaKVFvDRA---TNQSKCFGFVSfDNp~SaQaAIqAMNGFQIGMK--RLK 358 (371)
T KOG0146|consen 284 EGCNLFIYHLPQEFGDAELIQMFLPFGHIVSAKVFVDRA---TNQSKCFGFVSFDNPASAQAAIQAMNGFQIGMK--RLK 358 (371)
T ss_pred CcceEEEEeCchhhccHHHHHHhccccceeeeeeeehhc---cccccceeeEecCCchhHHHHHHHhcchhhhhh--hhh
Confidence 589999999999999999999999999999999999982 246777999999999999999999999999865 899
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+..+++.
T Consensus 359 VQLKRPkd 366 (371)
T KOG0146|consen 359 VQLKRPKD 366 (371)
T ss_pred hhhcCccc
Confidence 99887654
No 56
>smart00361 RRM_1 RNA recognition motif.
Probab=99.16 E-value=1.4e-10 Score=82.42 Aligned_cols=63 Identities=11% Similarity=0.121 Sum_probs=51.8
Q ss_pred HHHHHHhhc----CCCCeEEEE-EeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 146 RREVAHIFR----PFVGYKEVR-LVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 146 e~eL~~lF~----~fG~i~~v~-l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+++|+++|+ .||.|.+|. ++.++.. ..|.++|||||+|.+.++|.+|+..|||..+.++ .|++
T Consensus 2 ~~~l~~~~~~~~~~fG~v~~v~~v~~~~~~-~~~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr--~l~~ 69 (70)
T smart00361 2 DEDFEREFSEEEEYFGEVGKINKIYIDNVG-YENHKRGNVYITFERSEDAARAIVDLNGRYFDGR--TVKA 69 (70)
T ss_pred chhHHHHHHHHHHhcCCeeEEEEEEeCCCC-CCCCCcEEEEEEECCHHHHHHHHHHhCCCEECCE--EEEe
Confidence 578888888 999999995 6666521 1255677999999999999999999999999976 7765
No 57
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=99.14 E-value=8.2e-11 Score=111.12 Aligned_cols=148 Identities=20% Similarity=0.259 Sum_probs=99.3
Q ss_pred CCCCCCcccccchhhhhccCC--CCCCCCCCCCCCCCCCCCCCCCCCCCccccCCC-----CCCCCCCCCCCCCCCCCCC
Q 026915 52 RGMRDTDSLGASYDRYLRSAQ--ISSYSGGQSARHMSGGMPSRPVDDPRIVGIGGM-----DPGPSAKDRALGLGGGRSE 124 (231)
Q Consensus 52 ~~~~~~~~~~~~~d~~~~~~~--~~s~~~g~~~r~~~Gg~~g~~~~~~~~~~~gg~-----~~~~~~~~~~~g~~~~~p~ 124 (231)
-.|+|+..|++-..+ ++++ +.-|-+.++-.-+- ++.|..+-+-.+|..-.- ....++.-.+.++.
T Consensus 204 gkVrdVriI~Dr~s~--rskgi~Yvef~D~~sVp~ai-aLsGqrllg~pv~vq~sEaeknr~a~~s~a~~~k~~~----- 275 (549)
T KOG0147|consen 204 GKVRDVRIIGDRNSR--RSKGIAYVEFCDEQSVPLAI-ALSGQRLLGVPVIVQLSEAEKNRAANASPALQGKGFT----- 275 (549)
T ss_pred cCcceeEeeccccch--hhcceeEEEEecccchhhHh-hhcCCcccCceeEecccHHHHHHHHhccccccccccc-----
Confidence 368888888744442 6776 34555554443222 555554444444442110 00000101111111
Q ss_pred CCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecC
Q 026915 125 VPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCA 204 (231)
Q Consensus 125 ~~~p~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g 204 (231)
.| -..|||+||.++++|++|+.+|++||.|..|.+..+. ..|++|||+||+|.+.++|.+|++.|||..|-|
T Consensus 276 --~p---~~rl~vgnLHfNite~~lr~ifepfg~Ie~v~l~~d~---~tG~skgfGfi~f~~~~~ar~a~e~lngfelAG 347 (549)
T KOG0147|consen 276 --GP---MRRLYVGNLHFNITEDMLRGIFEPFGKIENVQLTKDS---ETGRSKGFGFITFVNKEDARKALEQLNGFELAG 347 (549)
T ss_pred --cc---hhhhhhcccccCchHHHHhhhccCcccceeeeecccc---ccccccCcceEEEecHHHHHHHHHHhccceecC
Confidence 11 2339999999999999999999999999999999885 237788899999999999999999999999998
Q ss_pred CcccEEEEeecCC
Q 026915 205 KSVPIRIDVTGNL 217 (231)
Q Consensus 205 ~~~~L~V~~ak~~ 217 (231)
+ .|+|......
T Consensus 348 r--~ikV~~v~~r 358 (549)
T KOG0147|consen 348 R--LIKVSVVTER 358 (549)
T ss_pred c--eEEEEEeeee
Confidence 7 8888766443
No 58
>KOG0146 consensus RNA-binding protein ETR-3 (RRM superfamily) [RNA processing and modification]
Probab=99.14 E-value=3.7e-11 Score=105.34 Aligned_cols=85 Identities=25% Similarity=0.345 Sum_probs=75.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC-cccEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK-SVPIR 210 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~-~~~L~ 210 (231)
.++|||+-|...-+|||++.+|.+||.|.+|.+..... |.+|||+||.|.+..+|..||+.|||.+.... +..|.
T Consensus 19 drklfvgml~kqq~e~dvrrlf~pfG~~~e~tvlrg~d----g~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLV 94 (371)
T KOG0146|consen 19 DRKLFVGMLNKQQSEDDVRRLFQPFGNIEECTVLRGPD----GNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLV 94 (371)
T ss_pred chhhhhhhhcccccHHHHHHHhcccCCcceeEEecCCC----CCCCCceEEEeccchHHHHHHHHhcccccCCCCccceE
Confidence 58999999999999999999999999999999998864 55667999999999999999999999985544 66899
Q ss_pred EEeecCCCCC
Q 026915 211 IDVTGNLTGH 220 (231)
Q Consensus 211 V~~ak~~~~~ 220 (231)
|.|+...+.+
T Consensus 95 VK~ADTdkER 104 (371)
T KOG0146|consen 95 VKFADTDKER 104 (371)
T ss_pred EEeccchHHH
Confidence 9999876543
No 59
>KOG0132 consensus RNA polymerase II C-terminal domain-binding protein RA4, contains RPR and RRM domains [RNA processing and modification; Transcription]
Probab=99.10 E-value=1.6e-10 Score=112.78 Aligned_cols=76 Identities=25% Similarity=0.454 Sum_probs=70.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
-++||||+.|+.+++|.||+.+|+.||.|.+|.++..+ | ||||....+.+|++|+.+|..+++... .|+
T Consensus 420 ~SrTLwvG~i~k~v~e~dL~~~feefGeiqSi~li~~R-----~----cAfI~M~~RqdA~kalqkl~n~kv~~k--~Ik 488 (894)
T KOG0132|consen 420 CSRTLWVGGIPKNVTEQDLANLFEEFGEIQSIILIPPR-----G----CAFIKMVRRQDAEKALQKLSNVKVADK--TIK 488 (894)
T ss_pred eeeeeeeccccchhhHHHHHHHHHhcccceeEeeccCC-----c----eeEEEEeehhHHHHHHHHHhcccccce--eeE
Confidence 47899999999999999999999999999999988875 4 999999999999999999999999976 999
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|.||...
T Consensus 489 i~Wa~g~ 495 (894)
T KOG0132|consen 489 IAWAVGK 495 (894)
T ss_pred EeeeccC
Confidence 9999764
No 60
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=99.10 E-value=5e-10 Score=103.74 Aligned_cols=73 Identities=18% Similarity=0.253 Sum_probs=65.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.|+|||+|||+++|+..|++-|..||.|+.+.|+.. |+++| .|.|.++++|+.|+..|+|.+|.++ .|+|
T Consensus 536 a~qIiirNlP~dfTWqmlrDKfre~G~v~yadime~------GkskG--VVrF~s~edAEra~a~Mngs~l~Gr--~I~V 605 (608)
T KOG4212|consen 536 ACQIIIRNLPFDFTWQMLRDKFREIGHVLYADIMEN------GKSKG--VVRFFSPEDAERACALMNGSRLDGR--NIKV 605 (608)
T ss_pred ccEEEEecCCccccHHHHHHHHHhccceehhhhhcc------CCccc--eEEecCHHHHHHHHHHhccCcccCc--eeee
Confidence 688999999999999999999999999998888543 55555 8999999999999999999999988 8998
Q ss_pred Eee
Q 026915 212 DVT 214 (231)
Q Consensus 212 ~~a 214 (231)
.|.
T Consensus 606 ~y~ 608 (608)
T KOG4212|consen 606 TYF 608 (608)
T ss_pred eeC
Confidence 873
No 61
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.09 E-value=7.3e-11 Score=114.18 Aligned_cols=82 Identities=28% Similarity=0.470 Sum_probs=73.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.++|+|+|||+..+-++++.||..||.|++|+|++...+ +...|||||+|-++.+|.+|+++|..++|.|+ .|.+
T Consensus 613 ~tKIlVRNipFeAt~rEVr~LF~aFGqlksvRlPKK~~k---~a~rGF~Fv~f~t~~ea~nA~~al~STHlyGR--rLVL 687 (725)
T KOG0110|consen 613 GTKILVRNIPFEATKREVRKLFTAFGQLKSVRLPKKIGK---GAHRGFGFVDFLTPREAKNAFDALGSTHLYGR--RLVL 687 (725)
T ss_pred cceeeeeccchHHHHHHHHHHHhcccceeeeccchhhcc---hhhccceeeeccCcHHHHHHHHhhcccceech--hhhe
Confidence 689999999999999999999999999999999988421 33445999999999999999999999999987 9999
Q ss_pred EeecCCC
Q 026915 212 DVTGNLT 218 (231)
Q Consensus 212 ~~ak~~~ 218 (231)
+||+...
T Consensus 688 EwA~~d~ 694 (725)
T KOG0110|consen 688 EWAKSDN 694 (725)
T ss_pred ehhccch
Confidence 9998643
No 62
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=99.08 E-value=4.3e-10 Score=106.83 Aligned_cols=84 Identities=10% Similarity=0.147 Sum_probs=67.9
Q ss_pred CCCEEEEcCCCCC----------CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 026915 131 ASSTLFVEGLPSD----------CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVK 200 (231)
Q Consensus 131 ~~~tLfVgnLp~~----------vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~ 200 (231)
++++|+|.||... ...++|+++|++||.|++|+|+.....+..+..+|++||+|++.++|++|+..|||.
T Consensus 408 ~s~v~~l~N~~~~~~l~~d~~~~~~~edl~~~f~~~G~v~~v~i~~~~~~~~~~~~~G~~fV~F~~~e~A~~A~~~lnGr 487 (509)
T TIGR01642 408 PTKVVQLTNLVTGDDLMDDEEYEEIYEDVKTEFSKYGPLINIVIPRPNGDRNSTPGVGKVFLEYADVRSAEKAMEGMNGR 487 (509)
T ss_pred CceEEEeccCCchhHhcCcchHHHHHHHHHHHHHhcCCeeEEEeeccCcCCCcCCCcceEEEEECCHHHHHHHHHHcCCC
Confidence 3788999999642 123678999999999999999876422222344669999999999999999999999
Q ss_pred eecCCcccEEEEeecC
Q 026915 201 SCCAKSVPIRIDVTGN 216 (231)
Q Consensus 201 ~l~g~~~~L~V~~ak~ 216 (231)
.|.++ .|.|.|...
T Consensus 488 ~~~gr--~v~~~~~~~ 501 (509)
T TIGR01642 488 KFNDR--VVVAAFYGE 501 (509)
T ss_pred EECCe--EEEEEEeCH
Confidence 99977 999999754
No 63
>KOG0109 consensus RNA-binding protein LARK, contains RRM and retroviral-type Zn-finger domains [RNA processing and modification; General function prediction only]
Probab=99.07 E-value=1.4e-10 Score=102.60 Aligned_cols=75 Identities=21% Similarity=0.357 Sum_probs=70.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.+++|+|+||.+.|+..||+..|++||.|.+|.|+++ |+||.|+-.++|..|+..|+|..+.|+ +|+
T Consensus 77 ~stkl~vgNis~tctn~ElRa~fe~ygpviecdivkd-----------y~fvh~d~~eda~~air~l~~~~~~gk--~m~ 143 (346)
T KOG0109|consen 77 ASTKLHVGNISPTCTNQELRAKFEKYGPVIECDIVKD-----------YAFVHFDRAEDAVEAIRGLDNTEFQGK--RMH 143 (346)
T ss_pred CccccccCCCCccccCHHHhhhhcccCCceeeeeecc-----------eeEEEEeeccchHHHHhcccccccccc--eee
Confidence 3799999999999999999999999999999999998 999999999999999999999999987 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|+.+.++.
T Consensus 144 vq~stsrl 151 (346)
T KOG0109|consen 144 VQLSTSRL 151 (346)
T ss_pred eeeecccc
Confidence 99986543
No 64
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.06 E-value=5e-10 Score=103.65 Aligned_cols=142 Identities=15% Similarity=0.156 Sum_probs=100.0
Q ss_pred cccCcccccccccccCCCCCCCcccccchhhhhccCC--CCCCCCC-CCCCCCCCCCCCCCCCCCCccccCCCCCCCCCC
Q 026915 36 HELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPRIVGIGGMDPGPSAK 112 (231)
Q Consensus 36 ~~~~~y~~~~~~r~~~~~~~~~~~~~~~~d~~~~~~~--~~s~~~g-~~~r~~~Gg~~g~~~~~~~~~~~gg~~~~~~~~ 112 (231)
++||.=++-|-|.. +.+|--+++.-+. . +-+ +..|-.. .+.+|+- .||-..+.+.. +++-
T Consensus 8 ~~v~e~~l~~~f~~-~~~v~s~rvc~d~-t----slgy~yvnf~~~~da~~A~~-~~n~~~~~~~~-~rim--------- 70 (369)
T KOG0123|consen 8 PDVTEAMLFDKFSP-AGPVLSIRVCRDA-T----SLGYAYVNFQQPADAERALD-TMNFDVLKGKP-IRIM--------- 70 (369)
T ss_pred CcCChHHHHHHhcc-cCCceeEEEeecC-C----ccceEEEecCCHHHHHHHHH-HcCCcccCCcE-EEee---------
Confidence 66676666665543 3344444555433 2 222 4456553 5557776 77777666533 2220
Q ss_pred CCCCCCCCCCCCCCCCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHH
Q 026915 113 DRALGLGGGRSEVPLPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAAT 192 (231)
Q Consensus 113 ~~~~g~~~~~p~~~~p~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~ 192 (231)
+. .. + ...|||.||+.+++.++|.++|+.||+|++|++..+..+ +||| ||+|++.++|.+
T Consensus 71 -----~s-----~r---d-~~~~~i~nl~~~~~~~~~~d~f~~~g~ilS~kv~~~~~g-----~kg~-FV~f~~e~~a~~ 130 (369)
T KOG0123|consen 71 -----WS-----QR---D-PSLVFIKNLDESIDNKSLYDTFSEFGNILSCKVATDENG-----SKGY-FVQFESEESAKK 130 (369)
T ss_pred -----hh-----cc---C-CceeeecCCCcccCcHHHHHHHHhhcCeeEEEEEEcCCC-----ceee-EEEeCCHHHHHH
Confidence 00 00 1 122999999999999999999999999999999999853 6679 999999999999
Q ss_pred HHHHhcCceecCCcccEEEEeecC
Q 026915 193 AMDALQVKSCCAKSVPIRIDVTGN 216 (231)
Q Consensus 193 Al~~L~G~~l~g~~~~L~V~~ak~ 216 (231)
|++.|||..+.+. .|-|.-...
T Consensus 131 ai~~~ng~ll~~k--ki~vg~~~~ 152 (369)
T KOG0123|consen 131 AIEKLNGMLLNGK--KIYVGLFER 152 (369)
T ss_pred HHHHhcCcccCCC--eeEEeeccc
Confidence 9999999999977 777765543
No 65
>KOG0131 consensus Splicing factor 3b, subunit 4 [RNA processing and modification]
Probab=99.06 E-value=3.2e-10 Score=94.47 Aligned_cols=87 Identities=17% Similarity=0.333 Sum_probs=73.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEE-EEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEV-RLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v-~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.+|||+||.++++|.-|.++|+.||.+... +++.+.. +|.++||+||.|.+.+.+.+|+..++|..+..+ ++.
T Consensus 96 ganlfvgNLd~~vDe~~L~dtFsafG~l~~~P~i~rd~~---tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr--~it 170 (203)
T KOG0131|consen 96 GANLFVGNLDPEVDEKLLYDTFSAFGVLISPPKIMRDPD---TGNPKGFGFINYASFEASDAAIGSMNGQYLCNR--PIT 170 (203)
T ss_pred cccccccccCcchhHHHHHHHHHhccccccCCccccccc---CCCCCCCeEEechhHHHHHHHHHHhccchhcCC--ceE
Confidence 5789999999999999999999999988653 5566652 256677999999999999999999999998865 999
Q ss_pred EEeecCCCCCCCC
Q 026915 211 IDVTGNLTGHVRR 223 (231)
Q Consensus 211 V~~ak~~~~~~~r 223 (231)
|+|++....++.|
T Consensus 171 v~ya~k~~~kg~~ 183 (203)
T KOG0131|consen 171 VSYAFKKDTKGER 183 (203)
T ss_pred EEEEEecCCCccc
Confidence 9999877655543
No 66
>KOG0110 consensus RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.02 E-value=6.6e-10 Score=107.65 Aligned_cols=81 Identities=20% Similarity=0.290 Sum_probs=71.6
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRID 212 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~ 212 (231)
++|||.||++++|.++|..+|...|.|++|.|...+.....=-++||+||+|.+.++|+.|+..|||+.|++. .|.|+
T Consensus 516 t~lfvkNlnf~Tt~e~l~~~F~k~G~VlS~~I~kkkd~~~k~lSmGfgFVEF~~~e~A~~a~k~lqgtvldGH--~l~lk 593 (725)
T KOG0110|consen 516 TKLFVKNLNFDTTLEDLEDLFSKQGTVLSIEISKKKDPANKYLSMGFGFVEFAKPESAQAALKALQGTVLDGH--KLELK 593 (725)
T ss_pred hhhhhhcCCcccchhHHHHHHHhcCeEEEEEEeccccccccccccceeEEEecCHHHHHHHHHHhcCceecCc--eEEEE
Confidence 4499999999999999999999999999999888773322223667999999999999999999999999987 89999
Q ss_pred eec
Q 026915 213 VTG 215 (231)
Q Consensus 213 ~ak 215 (231)
++.
T Consensus 594 ~S~ 596 (725)
T KOG0110|consen 594 ISE 596 (725)
T ss_pred ecc
Confidence 998
No 67
>KOG0153 consensus Predicted RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=99.00 E-value=1.3e-09 Score=98.40 Aligned_cols=75 Identities=17% Similarity=0.319 Sum_probs=66.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcC-ceecCCcccE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV-KSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G-~~l~g~~~~L 209 (231)
..+||||++|-..++|.+|++.|.+||+|.+++++..+ + ||||+|.++..|+.|.+.+-. ..|++. .|
T Consensus 227 ~I~tLyIg~l~d~v~e~dIrdhFyqyGeirsi~~~~~~-----~----CAFv~ftTR~aAE~Aae~~~n~lvI~G~--Rl 295 (377)
T KOG0153|consen 227 SIKTLYIGGLNDEVLEQDIRDHFYQYGEIRSIRILPRK-----G----CAFVTFTTREAAEKAAEKSFNKLVINGF--RL 295 (377)
T ss_pred ceeEEEecccccchhHHHHHHHHhhcCCeeeEEeeccc-----c----cceeeehhhHHHHHHHHhhcceeeecce--EE
Confidence 46889999999999999999999999999999999875 3 999999999999999875544 346665 89
Q ss_pred EEEeecC
Q 026915 210 RIDVTGN 216 (231)
Q Consensus 210 ~V~~ak~ 216 (231)
.|.|+++
T Consensus 296 ~i~Wg~~ 302 (377)
T KOG0153|consen 296 KIKWGRP 302 (377)
T ss_pred EEEeCCC
Confidence 9999988
No 68
>KOG4208 consensus Nucleolar RNA-binding protein NIFK [General function prediction only]
Probab=98.98 E-value=2e-09 Score=91.13 Aligned_cols=82 Identities=20% Similarity=0.269 Sum_probs=71.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCC-CCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPF-VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~f-G~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
...-+||..+|+-+-+.++...|.+| |.+..+++.+++ +.|.+||||||+|++++.|+-|-+.||+|.+.+. -|
T Consensus 48 ~~g~~~~~~~p~g~~e~~~~~~~~q~~g~v~r~rlsRnk---rTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~--lL 122 (214)
T KOG4208|consen 48 IEGVVYVDHIPHGFFETEILNYFRQFGGTVTRFRLSRNK---RTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEH--LL 122 (214)
T ss_pred CccceeecccccchhHHHHhhhhhhcCCeeEEEEeeccc---ccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhh--ee
Confidence 35779999999999999999999999 666777776765 4477888999999999999999999999999977 88
Q ss_pred EEEeecCC
Q 026915 210 RIDVTGNL 217 (231)
Q Consensus 210 ~V~~ak~~ 217 (231)
.+.|-.+.
T Consensus 123 ~c~vmppe 130 (214)
T KOG4208|consen 123 ECHVMPPE 130 (214)
T ss_pred eeEEeCch
Confidence 88887554
No 69
>KOG4212 consensus RNA-binding protein hnRNP-M [RNA processing and modification]
Probab=98.91 E-value=3.5e-09 Score=98.23 Aligned_cols=77 Identities=18% Similarity=0.334 Sum_probs=69.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhc-CCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFR-PFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~-~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.+.+||.|||+++.+.+|++||. +.|+|..|.|..|.+ |+++|||.|||++++.+++|++.||-+.+.++ +|.
T Consensus 44 ~R~vfItNIpyd~rWqdLKdLvrekvGev~yveLl~D~~----GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR--~l~ 117 (608)
T KOG4212|consen 44 DRSVFITNIPYDYRWQDLKDLVREKVGEVEYVELLFDES----GKARGCAVVEFKDPENVQKALEKLNKYEVNGR--ELV 117 (608)
T ss_pred cceEEEecCcchhhhHhHHHHHHHhcCceEeeeeecccC----CCcCCceEEEeeCHHHHHHHHHHhhhccccCc--eEE
Confidence 45699999999999999999996 678999999999986 55666999999999999999999999999987 888
Q ss_pred EEee
Q 026915 211 IDVT 214 (231)
Q Consensus 211 V~~a 214 (231)
|.--
T Consensus 118 vKEd 121 (608)
T KOG4212|consen 118 VKED 121 (608)
T ss_pred Eecc
Confidence 8644
No 70
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.90 E-value=1.5e-09 Score=98.86 Aligned_cols=76 Identities=16% Similarity=0.329 Sum_probs=68.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
-|.|||+.|.+++.|+.|+..|.+||.|++|.+..|.- .|+.||||||||+-++.|.-|++.|||..+.++ .|+|
T Consensus 113 McRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~---T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGR--NiKV 187 (544)
T KOG0124|consen 113 MCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPA---TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGR--NIKV 187 (544)
T ss_pred hHheeeeeeEEEechHHHHhhccCCCCcceeecccccc---cccccceEEEEEeCcHHHHHHHHHhccccccCc--cccc
Confidence 48899999999999999999999999999999999981 244555999999999999999999999999987 7877
Q ss_pred E
Q 026915 212 D 212 (231)
Q Consensus 212 ~ 212 (231)
.
T Consensus 188 g 188 (544)
T KOG0124|consen 188 G 188 (544)
T ss_pred c
Confidence 6
No 71
>KOG0533 consensus RRM motif-containing protein [RNA processing and modification]
Probab=98.85 E-value=8.8e-09 Score=90.12 Aligned_cols=81 Identities=20% Similarity=0.284 Sum_probs=71.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
..+|+|.|||..|+++||++||..||.++.+-|-.++. |++.|+|-|.|...++|+.|++.+||..+++. .|++
T Consensus 83 ~~~v~v~NL~~~V~~~Dl~eLF~~~~~~~r~~vhy~~~----G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~--~mk~ 156 (243)
T KOG0533|consen 83 STKVNVSNLPYGVIDADLKELFAEFGELKRVAVHYDRA----GRSLGTADVSFNRRDDAERAVKKYNGVALDGR--PMKI 156 (243)
T ss_pred cceeeeecCCcCcchHHHHHHHHHhccceEEeeccCCC----CCCCccceeeecchHhHHHHHHHhcCcccCCc--eeee
Confidence 48899999999999999999999999998888888865 56667999999999999999999999889987 7888
Q ss_pred EeecCCC
Q 026915 212 DVTGNLT 218 (231)
Q Consensus 212 ~~ak~~~ 218 (231)
+....+.
T Consensus 157 ~~i~~~~ 163 (243)
T KOG0533|consen 157 EIISSPS 163 (243)
T ss_pred EEecCcc
Confidence 7765543
No 72
>KOG0124 consensus Polypyrimidine tract-binding protein PUF60 (RRM superfamily) [RNA processing and modification]
Probab=98.79 E-value=1.8e-09 Score=98.20 Aligned_cols=170 Identities=11% Similarity=0.103 Sum_probs=112.5
Q ss_pred CCCCCcccCcccccc--cccccCCCCCCCcccccchhhhh-ccCCC--CCCCCCCCCC-CCCCCCCCCCCCCCCccccCC
Q 026915 31 DVPSGHELSSYYTRD--DDRGALRGMRDTDSLGASYDRYL-RSAQI--SSYSGGQSAR-HMSGGMPSRPVDDPRIVGIGG 104 (231)
Q Consensus 31 ~~~~~~~~~~y~~~~--~~r~~~~~~~~~~~~~~~~d~~~-~~~~~--~s~~~g~~~r-~~~Gg~~g~~~~~~~~~~~gg 104 (231)
.||..+....|+.-. +-|..|..+..+|+|..++|--. .-++| +-|--.|++. +.. .|||.-++++.+-.+.
T Consensus 112 iMcRvYVGSIsfEl~EDtiR~AF~PFGPIKSInMSWDp~T~kHKgFAFVEYEvPEaAqLAlE-qMNg~mlGGRNiKVgr- 189 (544)
T KOG0124|consen 112 IMCRVYVGSISFELREDTIRRAFDPFGPIKSINMSWDPATGKHKGFAFVEYEVPEAAQLALE-QMNGQMLGGRNIKVGR- 189 (544)
T ss_pred HhHheeeeeeEEEechHHHHhhccCCCCcceeecccccccccccceEEEEEeCcHHHHHHHH-HhccccccCccccccC-
Confidence 345555444454433 55999999999999999999643 23333 2222223332 222 5666655554332210
Q ss_pred CCCCCCCCCCCCCCCCCCCC-CCCCC--CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEE
Q 026915 105 MDPGPSAKDRALGLGGGRSE-VPLPP--DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCF 181 (231)
Q Consensus 105 ~~~~~~~~~~~~g~~~~~p~-~~~p~--~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aF 181 (231)
-.+++-. .|. ..+.. ..-+.|||..+.++.+|+||+.+|+-||+|++|.|....+. +..|||+|
T Consensus 190 --------PsNmpQA--QpiID~vqeeAk~fnRiYVaSvHpDLSe~DiKSVFEAFG~I~~C~LAr~pt~---~~HkGyGf 256 (544)
T KOG0124|consen 190 --------PSNMPQA--QPIIDMVQEEAKKFNRIYVASVHPDLSETDIKSVFEAFGEIVKCQLARAPTG---RGHKGYGF 256 (544)
T ss_pred --------CCCCccc--chHHHHHHHHHHhhheEEeeecCCCccHHHHHHHHHhhcceeeEEeeccCCC---CCccceee
Confidence 0111110 000 00000 12578999999999999999999999999999999998733 33566999
Q ss_pred EEeCCHHHHHHHHHHhcCceecCCcccEEEEeecCC
Q 026915 182 VDFVSPAHAATAMDALQVKSCCAKSVPIRIDVTGNL 217 (231)
Q Consensus 182 VeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~ak~~ 217 (231)
+||.+..+...|+..||=..|.++ -|||--+-.+
T Consensus 257 iEy~n~qs~~eAiasMNlFDLGGQ--yLRVGk~vTP 290 (544)
T KOG0124|consen 257 IEYNNLQSQSEAIASMNLFDLGGQ--YLRVGKCVTP 290 (544)
T ss_pred EEeccccchHHHhhhcchhhcccc--eEecccccCC
Confidence 999999999999999999999987 7888766443
No 73
>KOG0123 consensus Polyadenylate-binding protein (RRM superfamily) [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=98.76 E-value=2.2e-08 Score=92.72 Aligned_cols=74 Identities=26% Similarity=0.381 Sum_probs=67.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRID 212 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~ 212 (231)
..|||+ ++|||..|.++|+++|.|++++|..+- . +.|||||.|.++++|++||+.||-..+.++ +|+|-
T Consensus 2 ~sl~vg---~~v~e~~l~~~f~~~~~v~s~rvc~d~-t-----slgy~yvnf~~~~da~~A~~~~n~~~~~~~--~~rim 70 (369)
T KOG0123|consen 2 ASLYVG---PDVTEAMLFDKFSPAGPVLSIRVCRDA-T-----SLGYAYVNFQQPADAERALDTMNFDVLKGK--PIRIM 70 (369)
T ss_pred CceecC---CcCChHHHHHHhcccCCceeEEEeecC-C-----ccceEEEecCCHHHHHHHHHHcCCcccCCc--EEEee
Confidence 469999 999999999999999999999999996 3 556999999999999999999999999987 99999
Q ss_pred eecCC
Q 026915 213 VTGNL 217 (231)
Q Consensus 213 ~ak~~ 217 (231)
|+...
T Consensus 71 ~s~rd 75 (369)
T KOG0123|consen 71 WSQRD 75 (369)
T ss_pred hhccC
Confidence 98653
No 74
>KOG4209 consensus Splicing factor RNPS1, SR protein superfamily [RNA processing and modification]
Probab=98.74 E-value=2.6e-08 Score=86.78 Aligned_cols=81 Identities=15% Similarity=0.201 Sum_probs=72.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
...+||+|+.+.+|.++++..|+.||.|..+.++.++. .|.+|||+||+|.+.+.+++|+. |+|..|.+. .+.|
T Consensus 101 ~~sv~v~nvd~~~t~~~~e~hf~~Cg~i~~~ti~~d~~---~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~--~i~v 174 (231)
T KOG4209|consen 101 APSVWVGNVDFLVTLTKIELHFESCGGINRVTVPKDKF---RGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGP--AIEV 174 (231)
T ss_pred CceEEEeccccccccchhhheeeccCCccceeeecccc---CCCcceeEEEecccHhhhHHHhh-cCCcccccc--ccee
Confidence 58899999999999999999999999999999999983 25677799999999999999998 999999977 8899
Q ss_pred EeecCCC
Q 026915 212 DVTGNLT 218 (231)
Q Consensus 212 ~~ak~~~ 218 (231)
.+.+.+.
T Consensus 175 t~~r~~~ 181 (231)
T KOG4209|consen 175 TLKRTNV 181 (231)
T ss_pred eeeeeec
Confidence 8887553
No 75
>KOG1457 consensus RNA binding protein (contains RRM repeats) [General function prediction only]
Probab=98.68 E-value=1.5e-08 Score=87.16 Aligned_cols=68 Identities=28% Similarity=0.555 Sum_probs=58.9
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
.+.||||-||..+|||++|+.+|+.|-++..++|-..- |-| .|||+|++.+.|..||..|+|..|...
T Consensus 209 acstlfianl~~~~~ed~l~~~~~~~~gf~~l~~~~~~-----g~~--vaf~~~~~~~~at~am~~lqg~~~s~~ 276 (284)
T KOG1457|consen 209 ACSTLFIANLGPNCTEDELKQLLSRYPGFHILKIRARG-----GMP--VAFADFEEIEQATDAMNHLQGNLLSSS 276 (284)
T ss_pred hhhhHhhhccCCCCCHHHHHHHHHhCCCceEEEEecCC-----Ccc--eEeecHHHHHHHHHHHHHhhcceeccc
Confidence 47899999999999999999999999998777765442 433 799999999999999999999997654
No 76
>KOG0151 consensus Predicted splicing regulator, contains RRM, SWAP and RPR domains [General function prediction only]
Probab=98.67 E-value=4e-08 Score=95.52 Aligned_cols=83 Identities=17% Similarity=0.204 Sum_probs=71.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
.++|||+||++.++|+.|-..|..||.|.+|+|+.-++.--+-+..-|+||-|-++.+|++|+..|||..+... .|++
T Consensus 174 TTNlyv~Nlnpsv~E~~ll~tfGrfgPlasvKimwpRtEeEk~r~r~cgfvafmnR~D~era~k~lqg~iv~~~--e~K~ 251 (877)
T KOG0151|consen 174 TTNLYVGNLNPSVDENFLLRTFGRFGPLASVKIMWPRTEEEKRRERNCGFVAFMNRADAERALKELQGIIVMEY--EMKL 251 (877)
T ss_pred ccceeeecCCccccHHHHHHHhcccCcccceeeecccchhhhccccccceeeehhhhhHHHHHHHhcceeeeee--eeee
Confidence 57899999999999999999999999999999987651111112334999999999999999999999999976 8999
Q ss_pred EeecC
Q 026915 212 DVTGN 216 (231)
Q Consensus 212 ~~ak~ 216 (231)
-|++.
T Consensus 252 gWgk~ 256 (877)
T KOG0151|consen 252 GWGKA 256 (877)
T ss_pred ccccc
Confidence 99975
No 77
>KOG4661 consensus Hsp27-ERE-TATA-binding protein/Scaffold attachment factor (SAF-B) [Transcription]
Probab=98.67 E-value=8.6e-08 Score=91.52 Aligned_cols=82 Identities=21% Similarity=0.379 Sum_probs=71.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+++|||.+|...+.-.+|+.||++||.|+-.+|+.+. +.++- +.|+||++.+.++|.+||+.||-+.|.++ .|.|
T Consensus 405 gRNlWVSGLSstTRAtDLKnlFSKyGKVvGAKVVTNa-RsPGa--RCYGfVTMSts~eAtkCI~hLHrTELHGr--mISV 479 (940)
T KOG4661|consen 405 GRNLWVSGLSSTTRATDLKNLFSKYGKVVGAKVVTNA-RSPGA--RCYGFVTMSTSAEATKCIEHLHRTELHGR--MISV 479 (940)
T ss_pred ccceeeeccccchhhhHHHHHHHHhcceeceeeeecC-CCCCc--ceeEEEEecchHHHHHHHHHhhhhhhcce--eeee
Confidence 5789999999999999999999999999999999885 22322 23999999999999999999999999987 8999
Q ss_pred EeecCCC
Q 026915 212 DVTGNLT 218 (231)
Q Consensus 212 ~~ak~~~ 218 (231)
+-+++..
T Consensus 480 EkaKNEp 486 (940)
T KOG4661|consen 480 EKAKNEP 486 (940)
T ss_pred eecccCc
Confidence 9998653
No 78
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.66 E-value=2.4e-08 Score=90.34 Aligned_cols=78 Identities=18% Similarity=0.334 Sum_probs=63.4
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..++|||++|+|+++++.|++.|++||+|.+|.++++++. |+++||+||+|++.++..++|.. .-+.|+++ .|.
T Consensus 5 ~~~KlfiGgisw~ttee~Lr~yf~~~Gev~d~~vm~d~~t---~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr--~ve 78 (311)
T KOG4205|consen 5 ESGKLFIGGLSWETTEESLREYFSQFGEVTDCVVMRDPST---GRSRGFGFVTFATPEGVDAVLNA-RTHKLDGR--SVE 78 (311)
T ss_pred CCcceeecCcCccccHHHHHHHhcccCceeeEEEeccCCC---CCcccccceecCCCcchheeecc-cccccCCc--ccc
Confidence 4799999999999999999999999999999999999843 67778999999999998888753 23445554 444
Q ss_pred EEee
Q 026915 211 IDVT 214 (231)
Q Consensus 211 V~~a 214 (231)
+.-|
T Consensus 79 ~k~a 82 (311)
T KOG4205|consen 79 PKRA 82 (311)
T ss_pred ceec
Confidence 4444
No 79
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=98.66 E-value=2.6e-08 Score=94.53 Aligned_cols=70 Identities=29% Similarity=0.467 Sum_probs=62.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+..+|+|-|||..|++++|..+|+.||+|++|+.-..+. | .+||+|.|..+|++|+++|++.++.++ .|+
T Consensus 74 ~~~~L~v~nl~~~Vsn~~L~~~f~~yGeir~ir~t~~~~----~----~~~v~FyDvR~A~~Alk~l~~~~~~~~--~~k 143 (549)
T KOG4660|consen 74 NQGTLVVFNLPRSVSNDTLLRIFGAYGEIREIRETPNKR----G----IVFVEFYDVRDAERALKALNRREIAGK--RIK 143 (549)
T ss_pred ccceEEEEecCCcCCHHHHHHHHHhhcchhhhhcccccC----c----eEEEEEeehHhHHHHHHHHHHHHhhhh--hhc
Confidence 568999999999999999999999999999977555542 3 899999999999999999999999977 555
No 80
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=98.65 E-value=9.5e-08 Score=86.44 Aligned_cols=80 Identities=18% Similarity=0.265 Sum_probs=71.4
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeE--------EEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCce
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYK--------EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKS 201 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~--------~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~ 201 (231)
..++.|||.|||.++|-+|+.++|+.||.|. .|+|..++. |..||=|.+.|-..++.+-|+..|++..
T Consensus 132 ~~Nt~VYVsgLP~DiT~dE~~~~~sKcGiI~~d~~t~epk~KlYrd~~----G~lKGDaLc~y~K~ESVeLA~~ilDe~~ 207 (382)
T KOG1548|consen 132 KVNTSVYVSGLPLDITVDEFAEVMSKCGIIMRDPQTGEPKVKLYRDNQ----GKLKGDALCCYIKRESVELAIKILDEDE 207 (382)
T ss_pred ccCceEEecCCCCcccHHHHHHHHHhcceEeccCCCCCeeEEEEecCC----CCccCceEEEeecccHHHHHHHHhCccc
Confidence 3467799999999999999999999999886 488888875 5666689999999999999999999999
Q ss_pred ecCCcccEEEEeec
Q 026915 202 CCAKSVPIRIDVTG 215 (231)
Q Consensus 202 l~g~~~~L~V~~ak 215 (231)
|.+. .|+|+-|+
T Consensus 208 ~rg~--~~rVerAk 219 (382)
T KOG1548|consen 208 LRGK--KLRVERAK 219 (382)
T ss_pred ccCc--EEEEehhh
Confidence 9977 99999986
No 81
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=98.65 E-value=1.9e-08 Score=86.42 Aligned_cols=71 Identities=20% Similarity=0.445 Sum_probs=65.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRID 212 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~ 212 (231)
..+||++||+.+.+++|+++|..||.|.+|.+... |+||+|++..+|..|+..||+..|.+. .+.|+
T Consensus 2 ~rv~vg~~~~~~~~~d~E~~f~~yg~~~d~~mk~g-----------f~fv~fed~rda~Dav~~l~~~~l~~e--~~vve 68 (216)
T KOG0106|consen 2 PRVYIGRLPYRARERDVERFFKGYGKIPDADMKNG-----------FGFVEFEDPRDADDAVHDLDGKELCGE--RLVVE 68 (216)
T ss_pred CceeecccCCccchhHHHHHHhhccccccceeecc-----------cceeccCchhhhhcccchhcCceecce--eeeee
Confidence 46999999999999999999999999998876654 999999999999999999999999988 59999
Q ss_pred eecC
Q 026915 213 VTGN 216 (231)
Q Consensus 213 ~ak~ 216 (231)
|++.
T Consensus 69 ~~r~ 72 (216)
T KOG0106|consen 69 HARG 72 (216)
T ss_pred cccc
Confidence 9985
No 82
>KOG4206 consensus Spliceosomal protein snRNP-U1A/U2B [RNA processing and modification]
Probab=98.60 E-value=1.8e-07 Score=80.26 Aligned_cols=76 Identities=32% Similarity=0.581 Sum_probs=69.2
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++.+||+.|||.+++.+.|..+|.+|...++|+++..+. + .|||+|.+...|..|...|+|..|... ..++
T Consensus 145 pn~ilf~~niP~es~~e~l~~lf~qf~g~keir~i~~~~----~----iAfve~~~d~~a~~a~~~lq~~~it~~-~~m~ 215 (221)
T KOG4206|consen 145 PNNILFLTNIPSESESEMLSDLFEQFPGFKEIRLIPPRS----G----IAFVEFLSDRQASAAQQALQGFKITKK-NTMQ 215 (221)
T ss_pred CceEEEEecCCcchhHHHHHHHHhhCcccceeEeccCCC----c----eeEEecchhhhhHHHhhhhccceeccC-ceEE
Confidence 479999999999999999999999999999999998752 3 899999999999999999999999863 4899
Q ss_pred EEeec
Q 026915 211 IDVTG 215 (231)
Q Consensus 211 V~~ak 215 (231)
|.|++
T Consensus 216 i~~a~ 220 (221)
T KOG4206|consen 216 ITFAK 220 (221)
T ss_pred ecccC
Confidence 99885
No 83
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=98.60 E-value=2e-08 Score=86.02 Aligned_cols=78 Identities=14% Similarity=0.095 Sum_probs=69.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
...||||.|+-..|+|+-|.++|-+-|.|.+|.|..++.. ++| ||||+|+++....-|++.+||.++.++ .|.
T Consensus 8 ~drtl~v~n~~~~v~eelL~ElfiqaGPV~kv~ip~~~d~----~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~--e~q 80 (267)
T KOG4454|consen 8 MDRTLLVQNMYSGVSEELLSELFIQAGPVYKVGIPSGQDQ----EQK-FAYVFFPNENSVQLAGQLENGDDLEED--EEQ 80 (267)
T ss_pred hhhHHHHHhhhhhhhHHHHHHHhhccCceEEEeCCCCccC----CCc-eeeeecccccchhhhhhhcccchhccc--hhh
Confidence 3589999999999999999999999999999999988743 344 999999999999999999999999977 777
Q ss_pred EEeec
Q 026915 211 IDVTG 215 (231)
Q Consensus 211 V~~ak 215 (231)
|++-.
T Consensus 81 ~~~r~ 85 (267)
T KOG4454|consen 81 RTLRC 85 (267)
T ss_pred ccccc
Confidence 77643
No 84
>KOG0116 consensus RasGAP SH3 binding protein rasputin, contains NTF2 and RRM domains [Signal transduction mechanisms]
Probab=98.56 E-value=9.4e-08 Score=89.63 Aligned_cols=79 Identities=24% Similarity=0.412 Sum_probs=62.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
..+|||+|||+++++++|+++|.+||.|++..|.... +++....|+||+|++.++++.||++- =..|.+ +.|.|
T Consensus 288 ~~~i~V~nlP~da~~~~l~~~Fk~FG~Ik~~~I~vr~---~~~~~~~fgFV~f~~~~~~~~~i~As-p~~ig~--~kl~V 361 (419)
T KOG0116|consen 288 GLGIFVKNLPPDATPAELEEVFKQFGPIKEGGIQVRS---PGGKNPCFGFVEFENAAAVQNAIEAS-PLEIGG--RKLNV 361 (419)
T ss_pred ccceEeecCCCCCCHHHHHHHHhhcccccccceEEec---cCCCcCceEEEEEeecchhhhhhhcC-ccccCC--eeEEE
Confidence 4569999999999999999999999999998877764 22332259999999999999999765 333444 47888
Q ss_pred EeecC
Q 026915 212 DVTGN 216 (231)
Q Consensus 212 ~~ak~ 216 (231)
+=-+.
T Consensus 362 eek~~ 366 (419)
T KOG0116|consen 362 EEKRP 366 (419)
T ss_pred Eeccc
Confidence 86554
No 85
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=98.44 E-value=1.4e-06 Score=66.22 Aligned_cols=81 Identities=19% Similarity=0.185 Sum_probs=65.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcC--CCCeEEEEEeeCC-CCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC--cc
Q 026915 133 STLFVEGLPSDCSRREVAHIFRP--FVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK--SV 207 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~--fG~i~~v~l~~~k-~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~--~~ 207 (231)
+||.|+|||...|.++|.+++.. .|.+.-+.|+.|. ++. ..|||||.|.+++.|.+-.+.++|.+...- .+
T Consensus 2 TTvMirNIPn~~t~~~L~~~l~~~~~g~yDF~YLPiDf~~~~----N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~K 77 (97)
T PF04059_consen 2 TTVMIRNIPNKYTQEMLIQILDEHFKGKYDFFYLPIDFKNKC----NLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKK 77 (97)
T ss_pred eeEEEecCCCCCCHHHHHHHHHHhccCcceEEEeeeeccCCC----ceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCc
Confidence 79999999999999999988764 3566677788776 333 445999999999999999999999997532 35
Q ss_pred cEEEEeecCC
Q 026915 208 PIRIDVTGNL 217 (231)
Q Consensus 208 ~L~V~~ak~~ 217 (231)
.+.|.||+-.
T Consensus 78 vc~i~yAriQ 87 (97)
T PF04059_consen 78 VCEISYARIQ 87 (97)
T ss_pred EEEEehhHhh
Confidence 7899999753
No 86
>KOG4205 consensus RNA-binding protein musashi/mRNA cleavage and polyadenylation factor I complex, subunit HRP1 [RNA processing and modification]
Probab=98.39 E-value=4.9e-07 Score=81.91 Aligned_cols=80 Identities=19% Similarity=0.298 Sum_probs=65.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
..+|||++||.++++++|++.|.+||.|..+.++.++.. .+++||+||+|.+++..++++. ..-+.|++. .+.|
T Consensus 97 tkkiFvGG~~~~~~e~~~r~yfe~~g~v~~~~~~~d~~~---~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk--~vev 170 (311)
T KOG4205|consen 97 TKKIFVGGLPPDTTEEDFKDYFEQFGKVADVVIMYDKTT---SRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGK--KVEV 170 (311)
T ss_pred eeEEEecCcCCCCchHHHhhhhhccceeEeeEEeecccc---cccccceeeEeccccccceecc-cceeeecCc--eeeE
Confidence 679999999999999999999999999999999988732 4556699999999999998874 455567765 6777
Q ss_pred EeecCC
Q 026915 212 DVTGNL 217 (231)
Q Consensus 212 ~~ak~~ 217 (231)
.-|.+.
T Consensus 171 krA~pk 176 (311)
T KOG4205|consen 171 KRAIPK 176 (311)
T ss_pred eeccch
Confidence 776543
No 87
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.35 E-value=2.2e-06 Score=79.22 Aligned_cols=77 Identities=14% Similarity=0.282 Sum_probs=70.2
Q ss_pred CCEEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 132 SSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 132 ~~tLfVgnLp~~-vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++.|.|.||..+ ||.+-|..+|+-||.|.+|+|..++.. -|.|++.+...|+-|++.|+|.++.++ .||
T Consensus 297 n~vllvsnln~~~VT~d~LftlFgvYGdVqRVkil~nkkd--------~ALIQmsd~~qAqLA~~hL~g~~l~gk--~lr 366 (492)
T KOG1190|consen 297 NVVLLVSNLNEEAVTPDVLFTLFGVYGDVQRVKILYNKKD--------NALIQMSDGQQAQLAMEHLEGHKLYGK--KLR 366 (492)
T ss_pred ceEEEEecCchhccchhHHHHHHhhhcceEEEEeeecCCc--------ceeeeecchhHHHHHHHHhhcceecCc--eEE
Confidence 688999999876 899999999999999999999998731 699999999999999999999999986 999
Q ss_pred EEeecCCC
Q 026915 211 IDVTGNLT 218 (231)
Q Consensus 211 V~~ak~~~ 218 (231)
|.++|...
T Consensus 367 vt~SKH~~ 374 (492)
T KOG1190|consen 367 VTLSKHTN 374 (492)
T ss_pred EeeccCcc
Confidence 99998654
No 88
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=98.35 E-value=7.1e-07 Score=78.02 Aligned_cols=78 Identities=21% Similarity=0.416 Sum_probs=69.9
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
+..-+||.+.|-.+++++.|...|.+|-.+...++++++ +.|++|||+||.|.+.+++..|+..|+|.-++.+ +|
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~Kfpsf~~akviRdk---RTgKSkgygfVSf~~pad~~rAmrem~gkyVgsr--pi 262 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKKFPSFQKAKVIRDK---RTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSR--PI 262 (290)
T ss_pred cccceeecccccccccHHHHHHHHHhccchhhccccccc---cccccccceeeeecCHHHHHHHHHhhcccccccc--hh
Confidence 345789999999999999999999999999999999997 5588889999999999999999999999988865 66
Q ss_pred EEE
Q 026915 210 RID 212 (231)
Q Consensus 210 ~V~ 212 (231)
++.
T Consensus 263 klR 265 (290)
T KOG0226|consen 263 KLR 265 (290)
T ss_pred Hhh
Confidence 554
No 89
>KOG1995 consensus Conserved Zn-finger protein [General function prediction only]
Probab=98.22 E-value=3.8e-06 Score=76.45 Aligned_cols=83 Identities=22% Similarity=0.370 Sum_probs=72.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeE--------EEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYK--------EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSC 202 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~--------~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l 202 (231)
...+|||-+||.++++.+|.++|.+|+.|+ .|.|.+++ ..+++||=|.|.|++..+|+.|+..+++..+
T Consensus 65 ~~~ti~v~g~~d~~~~~~~~~~f~qcg~ikrnK~t~kPki~~y~dk---eT~~~KGeatvS~~D~~~akaai~~~agkdf 141 (351)
T KOG1995|consen 65 DNETIFVWGCPDSVCENDNADFFLQCGVIKRNKRTGKPKIKIYTDK---ETGAPKGEATVSYEDPPAAKAAIEWFAGKDF 141 (351)
T ss_pred ccccceeeccCccchHHHHHHHHhhcceeccCCCCCCcchhccccc---cccCcCCceeeeecChhhhhhhhhhhccccc
Confidence 368999999999999999999999999886 35555555 3477888999999999999999999999999
Q ss_pred cCCcccEEEEeecCCC
Q 026915 203 CAKSVPIRIDVTGNLT 218 (231)
Q Consensus 203 ~g~~~~L~V~~ak~~~ 218 (231)
.++ +|+|.+|...+
T Consensus 142 ~gn--~ikvs~a~~r~ 155 (351)
T KOG1995|consen 142 CGN--TIKVSLAERRT 155 (351)
T ss_pred cCC--Cchhhhhhhcc
Confidence 986 89999997665
No 90
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=98.20 E-value=8.4e-06 Score=60.33 Aligned_cols=69 Identities=17% Similarity=0.276 Sum_probs=47.9
Q ss_pred CEEEEcCCCCCCCHHH----HHHhhcCCCC-eEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcc
Q 026915 133 STLFVEGLPSDCSRRE----VAHIFRPFVG-YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSV 207 (231)
Q Consensus 133 ~tLfVgnLp~~vte~e----L~~lF~~fG~-i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~ 207 (231)
+.|||.|||.+.+... |+.|+..||+ |.+| . . + .|+|.|.+.+.|++|...|+|..+.|+
T Consensus 3 s~L~V~NLP~~~d~~~I~~RL~qLsdNCGGkVl~v--~-~------~----tAilrF~~~~~A~RA~KRmegEdVfG~-- 67 (90)
T PF11608_consen 3 SLLYVSNLPTNKDPSSIKNRLRQLSDNCGGKVLSV--S-G------G----TAILRFPNQEFAERAQKRMEGEDVFGN-- 67 (90)
T ss_dssp EEEEEES--TTS-HHHHHHHHHHHHHTTT--EEE-----T------T-----EEEEESSHHHHHHHHHHHTT--SSSS--
T ss_pred cEEEEecCCCCCCHHHHHHHHHHHhhccCCEEEEE--e-C------C----EEEEEeCCHHHHHHHHHhhcccccccc--
Confidence 4699999999988765 5678889986 3333 1 2 3 899999999999999999999999987
Q ss_pred cEEEEeecC
Q 026915 208 PIRIDVTGN 216 (231)
Q Consensus 208 ~L~V~~ak~ 216 (231)
.|.|+|...
T Consensus 68 kI~v~~~~~ 76 (90)
T PF11608_consen 68 KISVSFSPK 76 (90)
T ss_dssp --EEESS--
T ss_pred eEEEEEcCC
Confidence 899999854
No 91
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.18 E-value=7.9e-05 Score=68.55 Aligned_cols=78 Identities=13% Similarity=0.199 Sum_probs=69.5
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 131 ASSTLFVEGLPSD-CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~-vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
+++.+.|-+|... ++-+.|..||..||.|.+|++++.+. | -|.||..+..+.++|+..||+..+.+. +|
T Consensus 286 ~g~VmMVyGLdh~k~N~drlFNl~ClYGNV~rvkFmkTk~----g----tamVemgd~~aver~v~hLnn~~lfG~--kl 355 (494)
T KOG1456|consen 286 PGCVMMVYGLDHGKMNCDRLFNLFCLYGNVERVKFMKTKP----G----TAMVEMGDAYAVERAVTHLNNIPLFGG--KL 355 (494)
T ss_pred CCcEEEEEeccccccchhhhhhhhhhcCceeeEEEeeccc----c----eeEEEcCcHHHHHHHHHHhccCccccc--eE
Confidence 3789999999987 66778999999999999999999873 3 899999999999999999999999877 89
Q ss_pred EEEeecCCC
Q 026915 210 RIDVTGNLT 218 (231)
Q Consensus 210 ~V~~ak~~~ 218 (231)
.|.+++...
T Consensus 356 ~v~~SkQ~~ 364 (494)
T KOG1456|consen 356 NVCVSKQNF 364 (494)
T ss_pred EEeeccccc
Confidence 999988654
No 92
>KOG1190 consensus Polypyrimidine tract-binding protein [RNA processing and modification]
Probab=98.12 E-value=7.7e-06 Score=75.73 Aligned_cols=79 Identities=15% Similarity=0.206 Sum_probs=66.5
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++.+|.+.|+|..++||+|+.+|..-|..++......+. ++ ++.+++++.++|..|+-.++.+.+... ..||
T Consensus 413 psatlHlsnip~svsee~lk~~f~~~g~~vkafkff~kd--~k-----mal~q~~sveeA~~ali~~hnh~lgen-~hlR 484 (492)
T KOG1190|consen 413 PSATLHLSNIPPSVSEEDLKNLFQEPGGQVKAFKFFQKD--RK-----MALPQLESVEEAIQALIDLHNHYLGEN-HHLR 484 (492)
T ss_pred chhheeeccCCcccchhHHHHhhhcCCceEEeeeecCCC--cc-----eeecccCChhHhhhhccccccccCCCC-ceEE
Confidence 378999999999999999999999999876554443332 22 999999999999999999999998764 5899
Q ss_pred EEeecCC
Q 026915 211 IDVTGNL 217 (231)
Q Consensus 211 V~~ak~~ 217 (231)
|+|+++.
T Consensus 485 vSFSks~ 491 (492)
T KOG1190|consen 485 VSFSKST 491 (492)
T ss_pred EEeeccc
Confidence 9999863
No 93
>KOG1456 consensus Heterogeneous nuclear ribonucleoprotein L (contains RRM repeats) [RNA processing and modification]
Probab=98.11 E-value=1.1e-05 Score=74.17 Aligned_cols=88 Identities=16% Similarity=0.112 Sum_probs=71.1
Q ss_pred CCEEEEcCCC--CCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 132 SSTLFVEGLP--SDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 132 ~~tLfVgnLp--~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
++.|.+.=|. ..+|-+-|..|+.+.|.|..|.|.++. + - .|.|||++.+.|++|..+|||..|....-+|
T Consensus 120 N~VLl~TIlNp~YpItvDVly~Icnp~GkVlRIvIfkkn-g---V----QAmVEFdsv~~AqrAk~alNGADIYsGCCTL 191 (494)
T KOG1456|consen 120 NKVLLFTILNPQYPITVDVLYTICNPQGKVLRIVIFKKN-G---V----QAMVEFDSVEVAQRAKAALNGADIYSGCCTL 191 (494)
T ss_pred CeEEEEEeecCccccchhhhhhhcCCCCceEEEEEEecc-c---e----eeEEeechhHHHHHHHhhcccccccccceeE
Confidence 5666655444 569999999999999999999887763 2 1 7999999999999999999999988776799
Q ss_pred EEEeecCCCCCCCCCccc
Q 026915 210 RIDVTGNLTGHVRRKSTM 227 (231)
Q Consensus 210 ~V~~ak~~~~~~~r~s~~ 227 (231)
+|+|||+...+.-|+...
T Consensus 192 KIeyAkP~rlnV~knd~D 209 (494)
T KOG1456|consen 192 KIEYAKPTRLNVQKNDKD 209 (494)
T ss_pred EEEecCcceeeeeecCCc
Confidence 999999876554444333
No 94
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=98.09 E-value=3.6e-06 Score=80.34 Aligned_cols=83 Identities=23% Similarity=0.395 Sum_probs=73.8
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc
Q 026915 129 PDASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP 208 (231)
Q Consensus 129 ~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~ 208 (231)
++..+++||++||..+++..++++...||.++..+++++... |-+|||||.+|.++.....|+..|||.++.+. .
T Consensus 286 ~~~~~ki~v~~lp~~l~~~q~~Ell~~fg~lk~f~lv~d~~~---g~skg~af~ey~dpsvtd~A~agLnGm~lgd~--~ 360 (500)
T KOG0120|consen 286 PDSPNKIFVGGLPLYLTEDQVKELLDSFGPLKAFRLVKDSAT---GNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDK--K 360 (500)
T ss_pred ccccchhhhccCcCccCHHHHHHHHHhcccchhheeeccccc---ccccceeeeeeeCCcchhhhhcccchhhhcCc--e
Confidence 345789999999999999999999999999999999998732 45666999999999999999999999999976 8
Q ss_pred EEEEeecC
Q 026915 209 IRIDVTGN 216 (231)
Q Consensus 209 L~V~~ak~ 216 (231)
|.|+.|-.
T Consensus 361 lvvq~A~~ 368 (500)
T KOG0120|consen 361 LVVQRAIV 368 (500)
T ss_pred eEeehhhc
Confidence 99998854
No 95
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=97.98 E-value=6.2e-06 Score=74.08 Aligned_cols=82 Identities=26% Similarity=0.370 Sum_probs=71.4
Q ss_pred CCEEE-EcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 132 SSTLF-VEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 132 ~~tLf-VgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
+.++| |+||++++++++|+..|..+|.|..+++.... ..|.++||++|+|.+...+..|+.. +...+.+. +++
T Consensus 184 s~~~~~~~~~~f~~~~d~~~~~~~~~~~i~~~r~~~~~---~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~--~~~ 257 (285)
T KOG4210|consen 184 SDTIFFVGELDFSLTRDDLKEHFVSSGEITSVRLPTDE---ESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGR--PLR 257 (285)
T ss_pred cccceeecccccccchHHHhhhccCcCcceeeccCCCC---CccchhhhhhhhhhhchhHHHHhhc-ccCcccCc--ccc
Confidence 45566 99999999999999999999999999988886 3478889999999999999999887 77778866 899
Q ss_pred EEeecCCCC
Q 026915 211 IDVTGNLTG 219 (231)
Q Consensus 211 V~~ak~~~~ 219 (231)
|.+......
T Consensus 258 ~~~~~~~~~ 266 (285)
T KOG4210|consen 258 LEEDEPRPK 266 (285)
T ss_pred cccCCCCcc
Confidence 999987644
No 96
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=97.94 E-value=2.6e-05 Score=60.08 Aligned_cols=59 Identities=24% Similarity=0.358 Sum_probs=39.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCc
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVK 200 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~ 200 (231)
+.|+|.+++..++.++|+++|++||.|..|.+..... -|+|.|.+.+.|++|+..+.-.
T Consensus 2 ~il~~~g~~~~~~re~iK~~f~~~g~V~yVD~~~G~~---------~g~VRf~~~~~A~~a~~~~~~~ 60 (105)
T PF08777_consen 2 CILKFSGLGEPTSREDIKEAFSQFGEVAYVDFSRGDT---------EGYVRFKTPEAAQKALEKLKEA 60 (105)
T ss_dssp -EEEEEE--SS--HHHHHHHT-SS--EEEEE--TT-S---------EEEEEESS---HHHHHHHHHHT
T ss_pred eEEEEecCCCCcCHHHHHHHHHhcCCcceEEecCCCC---------EEEEEECCcchHHHHHHHHHhc
Confidence 5789999999999999999999999998888776542 7999999999999999877655
No 97
>KOG1855 consensus Predicted RNA-binding protein [General function prediction only]
Probab=97.89 E-value=1.8e-05 Score=73.64 Aligned_cols=71 Identities=23% Similarity=0.274 Sum_probs=57.8
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeC---CCCCCCCCc-------ceEEEEEeCCHHHHHHHHHHhcCc
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSK---ESRHPGGDP-------LILCFVDFVSPAHAATAMDALQVK 200 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~---k~~~~~G~~-------kg~aFVeF~~~~~A~~Al~~L~G~ 200 (231)
+++||.+.|||.+-.-+.|.+||+.||.|+.|+|..- ...-++..+ +-||||+|+..+.|.+|.+.|+..
T Consensus 230 ~srtivaenLP~Dh~~enl~kiFg~~G~IksIRIckPgaip~d~r~~~~~~~~~~tk~~AlvEye~~~~A~KA~e~~~~e 309 (484)
T KOG1855|consen 230 PSRTIVAENLPLDHSYENLSKIFGTVGSIKSIRICKPGAIPEDVRGFPKKYFELQTKECALVEYEEVEAARKARELLNPE 309 (484)
T ss_pred ccceEEEecCCcchHHHHHHHHhhcccceeeeeecCCCCCCcccccCCccchhhhhhhhhhhhhhhhHHHHHHHHhhchh
Confidence 5899999999999888999999999999999999876 211111112 458999999999999999988544
Q ss_pred e
Q 026915 201 S 201 (231)
Q Consensus 201 ~ 201 (231)
.
T Consensus 310 ~ 310 (484)
T KOG1855|consen 310 Q 310 (484)
T ss_pred h
Confidence 3
No 98
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.89 E-value=2.9e-05 Score=73.29 Aligned_cols=58 Identities=19% Similarity=0.389 Sum_probs=48.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHH
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMD 195 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~ 195 (231)
..-|=+++|||++|++||.++|+.++ |..+.+.... |++.|=|||||.+.+++++|++
T Consensus 10 ~~~vr~rGLPwsat~~ei~~Ff~~~~-I~~~~~~r~~-----Gr~sGeA~Ve~~seedv~~Alk 67 (510)
T KOG4211|consen 10 AFEVRLRGLPWSATEKEILDFFSNCG-IENLEIPRRN-----GRPSGEAYVEFTSEEDVEKALK 67 (510)
T ss_pred ceEEEecCCCccccHHHHHHHHhcCc-eeEEEEeccC-----CCcCcceEEEeechHHHHHHHH
Confidence 35566789999999999999999996 7776666554 4555589999999999999996
No 99
>KOG0106 consensus Alternative splicing factor SRp55/B52/SRp75 (RRM superfamily) [RNA processing and modification]
Probab=97.87 E-value=9.7e-06 Score=69.88 Aligned_cols=70 Identities=23% Similarity=0.313 Sum_probs=60.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
..+.|+|.||+..+.+.+|++.|+++|.+....+.. + ++||+|.+.++|..|++.|+|.++.++ .|.
T Consensus 98 s~~r~~~~~~~~r~~~qdl~d~~~~~g~~~~~~~~~-------~----~~~v~Fs~~~da~ra~~~l~~~~~~~~--~l~ 164 (216)
T KOG0106|consen 98 THFRLIVRNLSLRVSWQDLKDHFRPAGEVTYVDARR-------N----FAFVEFSEQEDAKRALEKLDGKKLNGR--RIS 164 (216)
T ss_pred ccceeeeccchhhhhHHHHhhhhcccCCCchhhhhc-------c----ccceeehhhhhhhhcchhccchhhcCc--eee
Confidence 357899999999999999999999999985444411 2 899999999999999999999999987 777
Q ss_pred EEe
Q 026915 211 IDV 213 (231)
Q Consensus 211 V~~ 213 (231)
+..
T Consensus 165 ~~~ 167 (216)
T KOG0106|consen 165 VEK 167 (216)
T ss_pred ecc
Confidence 743
No 100
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=97.72 E-value=0.00043 Score=68.03 Aligned_cols=75 Identities=19% Similarity=0.313 Sum_probs=61.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeE-EEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYK-EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~-~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
++.|-+.|+|++++-+||.++|..|-.+- +|++-.... |.+.|=|.|-|+++++|..|...|++.+|..+ .+.
T Consensus 867 p~V~~~~n~Pf~v~l~dI~~FF~dY~~~p~sI~~r~nd~----G~pTGe~mvAfes~~eAr~A~~dl~~~~i~nr--~V~ 940 (944)
T KOG4307|consen 867 PRVLSCNNFPFDVTLEDIVEFFNDYEPDPNSIRIRRNDD----GVPTGECMVAFESQEEARRASMDLDGQKIRNR--VVS 940 (944)
T ss_pred CeEEEecCCCccccHHHHHHHhcccccCCCceeEeecCC----CCcccceeEeecCHHHHHhhhhccccCcccce--eEE
Confidence 34788999999999999999999997653 455555443 55666899999999999999999999999865 555
Q ss_pred EE
Q 026915 211 ID 212 (231)
Q Consensus 211 V~ 212 (231)
|.
T Consensus 941 l~ 942 (944)
T KOG4307|consen 941 LR 942 (944)
T ss_pred EE
Confidence 54
No 101
>KOG0147 consensus Transcriptional coactivator CAPER (RRM superfamily) [Transcription]
Probab=97.64 E-value=1.4e-05 Score=76.16 Aligned_cols=83 Identities=16% Similarity=0.287 Sum_probs=72.6
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
...|+|+--|+..+++.+|+++|+.+|.|..|+++.++. .+++||.|+|+|.+.+....|| .|.|..+.+. +|.
T Consensus 178 d~Rtvf~~qla~r~~pRdL~efFs~~gkVrdVriI~Dr~---s~rskgi~Yvef~D~~sVp~ai-aLsGqrllg~--pv~ 251 (549)
T KOG0147|consen 178 DQRTVFCMQLARRNPPRDLEEFFSIVGKVRDVRIIGDRN---SRRSKGIAYVEFCDEQSVPLAI-ALSGQRLLGV--PVI 251 (549)
T ss_pred hHHHHHHHHHhhcCCchhHHHHHHhhcCcceeEeecccc---chhhcceeEEEEecccchhhHh-hhcCCcccCc--eeE
Confidence 468899999999999999999999999999999999982 1456779999999999999998 7999999987 999
Q ss_pred EEeecCCCC
Q 026915 211 IDVTGNLTG 219 (231)
Q Consensus 211 V~~ak~~~~ 219 (231)
|+-....++
T Consensus 252 vq~sEaekn 260 (549)
T KOG0147|consen 252 VQLSEAEKN 260 (549)
T ss_pred ecccHHHHH
Confidence 988765443
No 102
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=97.64 E-value=0.00012 Score=49.57 Aligned_cols=52 Identities=19% Similarity=0.349 Sum_probs=42.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHH
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAM 194 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al 194 (231)
+.|-|.+.+.+..+. +...|.+||+|.++.+....+ +.+|.|.++.+|++||
T Consensus 2 ~wI~V~Gf~~~~~~~-vl~~F~~fGeI~~~~~~~~~~---------~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 2 TWISVSGFPPDLAEE-VLEHFASFGEIVDIYVPESTN---------WMYLKYKSRKDAEKAL 53 (53)
T ss_pred cEEEEEeECchHHHH-HHHHHHhcCCEEEEEcCCCCc---------EEEEEECCHHHHHhhC
Confidence 678899999886654 455888999999988773322 8999999999999985
No 103
>KOG4211 consensus Splicing factor hnRNP-F and related RNA-binding proteins [RNA processing and modification]
Probab=97.52 E-value=0.00024 Score=67.22 Aligned_cols=68 Identities=21% Similarity=0.353 Sum_probs=51.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecC
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCA 204 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~-v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g 204 (231)
...|=+++||+.||++||.++|+..--+.. |-++.+.. |++.|=|||+|++.+.|++||.. |-..|..
T Consensus 103 d~vVRLRGLPfscte~dI~~FFaGL~Iv~~gi~l~~d~r----gR~tGEAfVqF~sqe~ae~Al~r-hre~iGh 171 (510)
T KOG4211|consen 103 DGVVRLRGLPFSCTEEDIVEFFAGLEIVPDGILLPMDQR----GRPTGEAFVQFESQESAEIALGR-HRENIGH 171 (510)
T ss_pred CceEEecCCCccCcHHHHHHHhcCCcccccceeeeccCC----CCcccceEEEecCHHHHHHHHHH-HHHhhcc
Confidence 467889999999999999999998754433 45566653 44555899999999999999853 3333443
No 104
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=97.52 E-value=0.00031 Score=67.57 Aligned_cols=76 Identities=18% Similarity=0.218 Sum_probs=60.7
Q ss_pred CCEEEEcCCCCCCC------HHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 132 SSTLFVEGLPSDCS------RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 132 ~~tLfVgnLp~~vt------e~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
-+.|+|.|+|.--. ..-|..+|+++|+|+.+.++.+.. |..+||.|++|.+..+|+.|+..|||++|+.+
T Consensus 58 D~vVvv~g~PvV~~~rl~klk~vl~kvfsk~gk~vn~~~P~~e~----ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldkn 133 (698)
T KOG2314|consen 58 DSVVVVDGAPVVGPARLEKLKKVLTKVFSKAGKIVNMYYPIDEE----GGTKGYLFVEYASMRDAKKAVKSLNGKRLDKN 133 (698)
T ss_pred ceEEEECCCcccChhHHHHHHHHHHHHHHhhccccceeeccCcc----CCeeeEEEEEecChhhHHHHHHhcccceeccc
Confidence 47899999996422 223567999999999998887763 33777999999999999999999999999876
Q ss_pred cccEEEE
Q 026915 206 SVPIRID 212 (231)
Q Consensus 206 ~~~L~V~ 212 (231)
.++.|.
T Consensus 134 -Htf~v~ 139 (698)
T KOG2314|consen 134 -HTFFVR 139 (698)
T ss_pred -ceEEee
Confidence 345544
No 105
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=97.46 E-value=0.00037 Score=63.54 Aligned_cols=82 Identities=13% Similarity=0.233 Sum_probs=63.7
Q ss_pred CCEEEEcCCCCCCCHHHH------HHhhcCCCCeEEEEEeeCC-CCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecC
Q 026915 132 SSTLFVEGLPSDCSRREV------AHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCA 204 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL------~~lF~~fG~i~~v~l~~~k-~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g 204 (231)
.+-+||-+||+.+..|++ .++|.+||.|+.|.|-++. +-.+. ..+.-.+|+|.+.++|.+||...+|..++|
T Consensus 114 KNLvYVigi~pkva~Ee~~~vLk~~eyFGQyGkI~KIvvNkkt~s~nst-~~h~gvYITy~~kedAarcIa~vDgs~~DG 192 (480)
T COG5175 114 KNLVYVIGIPPKVADEEVAPVLKRHEYFGQYGKIKKIVVNKKTSSLNST-ASHAGVYITYSTKEDAARCIAEVDGSLLDG 192 (480)
T ss_pred cceeEEecCCCCCCcccccccccchhhhhhccceeEEEecccccccccc-cccceEEEEecchHHHHHHHHHhccccccC
Confidence 477999999999888873 2789999999988766554 11111 111125999999999999999999999998
Q ss_pred CcccEEEEeecC
Q 026915 205 KSVPIRIDVTGN 216 (231)
Q Consensus 205 ~~~~L~V~~ak~ 216 (231)
+ .|+..|...
T Consensus 193 r--~lkatYGTT 202 (480)
T COG5175 193 R--VLKATYGTT 202 (480)
T ss_pred c--eEeeecCch
Confidence 7 899998753
No 106
>KOG4849 consensus mRNA cleavage factor I subunit/CPSF subunit [RNA processing and modification]
Probab=97.38 E-value=0.00016 Score=66.08 Aligned_cols=80 Identities=13% Similarity=0.192 Sum_probs=64.9
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG--~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
-.+||+||-|.+|++||.+.....| .|.++++..++ ..|++||||+|...+.+..++-++.|--..|.+++ +..
T Consensus 81 ~~~YvGNL~W~TTD~DL~~A~~S~G~~~~~dmKFFENR---~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~-P~V 156 (498)
T KOG4849|consen 81 YCCYVGNLLWYTTDADLLKALQSTGLAQFADMKFFENR---TNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQS-PTV 156 (498)
T ss_pred EEEEecceeEEeccHHHHHHHHhhhHHHHhhhhhhhcc---cCCcccceEEEEecchHHHHHHHHhcccceecCCC-Cee
Confidence 4699999999999999998887776 35566666665 23788889999999999999999999998898875 566
Q ss_pred EEeecC
Q 026915 211 IDVTGN 216 (231)
Q Consensus 211 V~~ak~ 216 (231)
+.|-|.
T Consensus 157 ~~~NK~ 162 (498)
T KOG4849|consen 157 LSYNKT 162 (498)
T ss_pred eccchh
Confidence 666553
No 107
>PF08675 RNA_bind: RNA binding domain; InterPro: IPR014789 This domain corresponds to the RNA binding domain of Poly(A)-specific ribonuclease (PARN). ; GO: 0003723 RNA binding, 0004535 poly(A)-specific ribonuclease activity, 0046872 metal ion binding, 0006402 mRNA catabolic process, 0005634 nucleus, 0005737 cytoplasm; PDB: 3CTR_A 2ROK_A 3D45_B 1WHV_A.
Probab=97.26 E-value=0.0018 Score=47.89 Aligned_cols=55 Identities=18% Similarity=0.409 Sum_probs=44.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~ 198 (231)
....||. .|.+....||.+||++||.| .|..+.+. -|||...+++.|..|+..+.
T Consensus 9 dHVFhlt-FPkeWK~~DI~qlFspfG~I-~VsWi~dT----------SAfV~l~~r~~~~~v~~~~~ 63 (87)
T PF08675_consen 9 DHVFHLT-FPKEWKTSDIYQLFSPFGQI-YVSWINDT----------SAFVALHNRDQAKVVMNTLK 63 (87)
T ss_dssp CCEEEEE---TT--HHHHHHHCCCCCCE-EEEEECTT----------EEEEEECCCHHHHHHHHHHT
T ss_pred ceEEEEe-CchHhhhhhHHHHhccCCcE-EEEEEcCC----------cEEEEeecHHHHHHHHHHhc
Confidence 4566776 99999999999999999998 57777774 79999999999999999886
No 108
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=97.19 E-value=0.00017 Score=71.97 Aligned_cols=79 Identities=18% Similarity=0.245 Sum_probs=66.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
...|||+|+|+..|.++|+.+|+.+|++++++++..+. |+|||.+||.|.+..+|..++...+..-+.-+ .+.|
T Consensus 736 K~~v~i~g~pf~gt~e~~k~l~~~~gn~~~~~~vt~r~----gkpkg~a~v~y~~ea~~s~~~~s~d~~~~rE~--~~~v 809 (881)
T KOG0128|consen 736 KISVAISGPPFQGTKEELKSLASKTGNVTSLRLVTVRA----GKPKGKARVDYNTEADASRKVASVDVAGKREN--NGEV 809 (881)
T ss_pred hhhhheeCCCCCCchHHHHhhccccCCccccchhhhhc----cccccceeccCCCcchhhhhcccchhhhhhhc--Cccc
Confidence 46799999999999999999999999999999888764 67778999999999999999877776666544 5666
Q ss_pred EeecC
Q 026915 212 DVTGN 216 (231)
Q Consensus 212 ~~ak~ 216 (231)
+.+.+
T Consensus 810 ~vsnp 814 (881)
T KOG0128|consen 810 QVSNP 814 (881)
T ss_pred cccCC
Confidence 66443
No 109
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=97.12 E-value=0.0012 Score=62.84 Aligned_cols=65 Identities=25% Similarity=0.334 Sum_probs=48.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcce---EEEEEeCCHHHHHHHHHH
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLI---LCFVDFVSPAHAATAMDA 196 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg---~aFVeF~~~~~A~~Al~~ 196 (231)
-+++|||++||++++|++|...|..||.++ |....+...+..=-+|| |.|+.|+++.....-|.+
T Consensus 258 ~S~KVFvGGlp~dise~~i~~~F~~FGs~~-VdWP~k~~~~~~~ppkGs~~YvflvFe~E~sV~~Ll~a 325 (520)
T KOG0129|consen 258 YSRKVFVGGLPWDITEAQINASFGQFGSVK-VDWPGKANSRGRAPPKGSYGYVFLVFEDERSVQSLLSA 325 (520)
T ss_pred cccceeecCCCccccHHHHHhhcccccceE-eecCCCccccccCCCCCcccEEEEEecchHHHHHHHHH
Confidence 468999999999999999999999999874 44443222211123677 999999998887765543
No 110
>KOG0120 consensus Splicing factor U2AF, large subunit (RRM superfamily) [RNA processing and modification]
Probab=97.08 E-value=0.0019 Score=61.95 Aligned_cols=62 Identities=15% Similarity=0.193 Sum_probs=49.2
Q ss_pred HhhcCCCCeEEEEEeeC-CCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEEeec
Q 026915 151 HIFRPFVGYKEVRLVSK-ESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRIDVTG 215 (231)
Q Consensus 151 ~lF~~fG~i~~v~l~~~-k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~ak 215 (231)
.-|+.||.|.+|.+... ...+.. --.|.-||+|.+.++++.|+++|+|.++.++ ++..+|-.
T Consensus 428 ~ec~k~g~v~~v~ipr~~~~~~~~-~G~GkVFVefas~ed~qrA~~~L~GrKF~nR--tVvtsYyd 490 (500)
T KOG0120|consen 428 TECAKFGAVRSVEIPRPYPDENPV-PGTGKVFVEFADTEDSQRAMEELTGRKFANR--TVVASYYD 490 (500)
T ss_pred HHhcccCceeEEecCCCCCCCCcC-CCcccEEEEecChHHHHHHHHHccCceeCCc--EEEEEecC
Confidence 45888999999999887 322221 1234789999999999999999999999977 88888754
No 111
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=97.01 E-value=0.00098 Score=67.07 Aligned_cols=79 Identities=15% Similarity=0.238 Sum_probs=70.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
++.+||++|..++....|...|..||.|..|.+-.. ++ |++|.|++...|+.|+..|-|..|.+-.+.|+|
T Consensus 455 ttr~~sgglg~w~p~~~l~r~fd~fGpir~Idy~hg-------q~--yayi~yes~~~aq~a~~~~rgap~G~P~~r~rv 525 (975)
T KOG0112|consen 455 TTRLQSGGLGPWSPVSRLNREFDRFGPIRIIDYRHG-------QP--YAYIQYESPPAAQAATHDMRGAPLGGPPRRLRV 525 (975)
T ss_pred ceeeccCCCCCCChHHHHHHHhhccCcceeeecccC-------Cc--ceeeecccCccchhhHHHHhcCcCCCCCccccc
Confidence 688999999999999999999999999988765443 33 999999999999999999999999887778999
Q ss_pred EeecCCCC
Q 026915 212 DVTGNLTG 219 (231)
Q Consensus 212 ~~ak~~~~ 219 (231)
.|+.....
T Consensus 526 dla~~~~~ 533 (975)
T KOG0112|consen 526 DLASPPGA 533 (975)
T ss_pred ccccCCCC
Confidence 99987654
No 112
>KOG2416 consensus Acinus (induces apoptotic chromatin condensation) [Chromatin structure and dynamics]
Probab=96.83 E-value=0.0012 Score=63.97 Aligned_cols=78 Identities=15% Similarity=0.195 Sum_probs=61.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcC-CCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC-cc
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRP-FVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK-SV 207 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~-fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~-~~ 207 (231)
..++.|||.||=.-+|.-.|+.|+.. +|.|.+. ..|+-+ --|||.|.+.++|.+-+.+|||.+.-.. .+
T Consensus 442 ~~SnvlhI~nLvRPFTlgQLkelL~rtgg~Vee~--WmDkIK-------ShCyV~yss~eEA~atr~AlhnV~WP~sNPK 512 (718)
T KOG2416|consen 442 EPSNVLHIDNLVRPFTLGQLKELLGRTGGNVEEF--WMDKIK-------SHCYVSYSSVEEAAATREALHNVQWPPSNPK 512 (718)
T ss_pred CccceEeeecccccchHHHHHHHHhhccCchHHH--HHHHhh-------cceeEecccHHHHHHHHHHHhccccCCCCCc
Confidence 46899999999999999999999995 5555555 333311 1699999999999999999999995443 34
Q ss_pred cEEEEeecC
Q 026915 208 PIRIDVTGN 216 (231)
Q Consensus 208 ~L~V~~ak~ 216 (231)
.|.+.|+..
T Consensus 513 ~L~adf~~~ 521 (718)
T KOG2416|consen 513 HLIADFVRA 521 (718)
T ss_pred eeEeeecch
Confidence 799999863
No 113
>KOG0129 consensus Predicted RNA-binding protein (RRM superfamily) [Translation, ribosomal structure and biogenesis]
Probab=96.82 E-value=0.0032 Score=60.06 Aligned_cols=64 Identities=28% Similarity=0.283 Sum_probs=55.4
Q ss_pred CCCCCEEEEcCCCCCCCHHHHHHhhc-CCCCeEEEEEeeCC-CCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 026915 129 PDASSTLFVEGLPSDCSRREVAHIFR-PFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDA 196 (231)
Q Consensus 129 ~~~~~tLfVgnLp~~vte~eL~~lF~-~fG~i~~v~l~~~k-~~~~~G~~kg~aFVeF~~~~~A~~Al~~ 196 (231)
-|+.+|||||+||.-++-+||..||+ -||.|.-+-|=.|. - +-|||-+=|+|.+...=.+||.+
T Consensus 367 lDprrTVFVGgvprpl~A~eLA~imd~lyGgV~yaGIDtD~k~----KYPkGaGRVtFsnqqsYi~AIsa 432 (520)
T KOG0129|consen 367 IDPRRTVFVGGLPRPLTAEELAMIMEDLFGGVLYVGIDTDPKL----KYPKGAGRVTFSNQQAYIKAISA 432 (520)
T ss_pred cCccceEEecCCCCcchHHHHHHHHHHhcCceEEEEeccCccc----CCCCCcceeeecccHHHHHHHhh
Confidence 36789999999999999999999999 89999988888883 3 34666999999999998999864
No 114
>KOG3152 consensus TBP-binding protein, activator of basal transcription (contains rrm motif) [Transcription]
Probab=96.65 E-value=0.0014 Score=57.75 Aligned_cols=74 Identities=18% Similarity=0.283 Sum_probs=59.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-C----CCCCCCcce--E--EEEEeCCHHHHHHHHHHhcCcee
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-S----RHPGGDPLI--L--CFVDFVSPAHAATAMDALQVKSC 202 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k-~----~~~~G~~kg--~--aFVeF~~~~~A~~Al~~L~G~~l 202 (231)
.-.||+++||+.....-|++||+.||.|-.|.|.... + +.++|.... | +.|||.+...|..+...|||..|
T Consensus 74 ~GVvylS~IPp~m~~~rlReil~~yGeVGRvylqpE~~s~~~~r~~~~~n~~~~y~EGWvEF~~KrvAK~iAe~Lnn~~I 153 (278)
T KOG3152|consen 74 TGVVYLSNIPPYMDPVRLREILSQYGEVGRVYLQPEDDSKRAARKRKGGNYKKLYSEGWVEFISKRVAKRIAELLNNTPI 153 (278)
T ss_pred ceEEEeccCCCccCHHHHHHHHHhccccceEEecchhhHHHHHHhhcCCCccccchhHHHHHHHHHHHHHHHHHhCCCcc
Confidence 4679999999999999999999999999999887655 2 011111111 1 67999999999999999999999
Q ss_pred cCC
Q 026915 203 CAK 205 (231)
Q Consensus 203 ~g~ 205 (231)
.+.
T Consensus 154 ggk 156 (278)
T KOG3152|consen 154 GGK 156 (278)
T ss_pred CCC
Confidence 986
No 115
>KOG0105 consensus Alternative splicing factor ASF/SF2 (RRM superfamily) [RNA processing and modification]
Probab=96.58 E-value=0.02 Score=48.60 Aligned_cols=64 Identities=16% Similarity=0.212 Sum_probs=57.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
...|.|.+||...++.+|++....-|.|....+.++ | .+.|+|...++.+-|+..|+..++...
T Consensus 115 e~RVvVsGLp~SgSWQDLKDHmReaGdvCfadv~rD------g----~GvV~~~r~eDMkYAvr~ld~~~~~se 178 (241)
T KOG0105|consen 115 EYRVVVSGLPPSGSWQDLKDHMREAGDVCFADVQRD------G----VGVVEYLRKEDMKYAVRKLDDQKFRSE 178 (241)
T ss_pred ceeEEEecCCCCCchHHHHHHHHhhCCeeeeeeecc------c----ceeeeeeehhhHHHHHHhhccccccCc
Confidence 467999999999999999999999999988887777 4 899999999999999999998876543
No 116
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=96.54 E-value=0.0032 Score=58.43 Aligned_cols=72 Identities=14% Similarity=0.223 Sum_probs=55.3
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
..|-|.||.+++|.+.+..||...|.|.+++|........--...-.|||-|.+..++..|- .|.++.+.++
T Consensus 8 ~vIqvanispsat~dqm~tlFg~lGkI~elrlyp~~~d~~~pv~sRtcyVkf~d~~sv~vaQ-hLtntvfvdr 79 (479)
T KOG4676|consen 8 GVIQVANISPSATKDQMQTLFGNLGKIPELRLYPNVDDSKIPVISRTCYVKFLDSQSVTVAQ-HLTNTVFVDR 79 (479)
T ss_pred ceeeecccCchhhHHHHHHHHhhccccccccccCCCCCccCcceeeeEEEeccCCcceeHHh-hhccceeeee
Confidence 47889999999999999999999999999999875411110111227999999999998884 5777776554
No 117
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=96.53 E-value=0.015 Score=54.02 Aligned_cols=61 Identities=28% Similarity=0.408 Sum_probs=46.3
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCC---C-CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPF---V-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~f---G-~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~ 196 (231)
--.|-.++||+++++.++.++|.+- + ....|-++...+ |++.|=|||.|..+++|+.||..
T Consensus 161 qvivRmRGLPfdat~~dVv~FF~~~cpv~~g~egvLFV~rpd----grpTGdAFvlfa~ee~aq~aL~k 225 (508)
T KOG1365|consen 161 QVIVRMRGLPFDATALDVVEFFGPPCPVTGGTEGVLFVTRPD----GRPTGDAFVLFACEEDAQFALRK 225 (508)
T ss_pred ceEEEecCCCCCcchHHHHHhcCCCCcccCCccceEEEECCC----CCcccceEEEecCHHHHHHHHHH
Confidence 4456678999999999999999642 2 334555555544 45555899999999999999853
No 118
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=96.49 E-value=0.015 Score=44.51 Aligned_cols=73 Identities=15% Similarity=0.180 Sum_probs=51.1
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEE-------------EeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhc
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVR-------------LVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ 198 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~-------------l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~ 198 (231)
.+.|.|=+.|.. ....|.+.|++||.|++.. +.... . +-.|+|+++.+|.+||. -|
T Consensus 6 ~~wVtVFGfp~~-~~~~Vl~~F~~~G~Ile~~~~~~~~~~~~~~~~~~~~-----N----Wi~I~Y~~~~~A~rAL~-~N 74 (100)
T PF05172_consen 6 ETWVTVFGFPPS-ASNQVLRHFSSFGTILEHFEVLRSSSGINPYPIPSGG-----N----WIHITYDNPLSAQRALQ-KN 74 (100)
T ss_dssp CCEEEEE---GG-GHHHHHHHHHCCS-EECEEGGG----------E-CCT-----T----EEEEEESSHHHHHHHHT-TT
T ss_pred CeEEEEEccCHH-HHHHHHHHHHhcceEEEeecccccccccccccCCCCC-----C----EEEEECCCHHHHHHHHH-hC
Confidence 466778888888 5567778999999998774 22221 2 99999999999999995 89
Q ss_pred CceecCCcccEEEEeecC
Q 026915 199 VKSCCAKSVPIRIDVTGN 216 (231)
Q Consensus 199 G~~l~g~~~~L~V~~ak~ 216 (231)
|..+.+. -.+-|.++++
T Consensus 75 G~i~~g~-~mvGV~~~~~ 91 (100)
T PF05172_consen 75 GTIFSGS-LMVGVKPCDP 91 (100)
T ss_dssp TEEETTC-EEEEEEE-HH
T ss_pred CeEEcCc-EEEEEEEcHH
Confidence 9999875 3455777753
No 119
>PF10309 DUF2414: Protein of unknown function (DUF2414); InterPro: IPR019416 This entry contains proteins that have no known function.
Probab=96.44 E-value=0.012 Score=41.15 Aligned_cols=54 Identities=22% Similarity=0.387 Sum_probs=45.5
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCC---CCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPF---VGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~f---G~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L 197 (231)
.+|+|++++ +.+.++|+..|..| .....|..+.|. -|-|.|.+.+.|.+||.+|
T Consensus 6 eavhirGvd-~lsT~dI~~y~~~y~~~~~~~~IEWIdDt----------ScNvvf~d~~~A~~AL~~L 62 (62)
T PF10309_consen 6 EAVHIRGVD-ELSTDDIKAYFSEYFDEEGPFRIEWIDDT----------SCNVVFKDEETAARALVAL 62 (62)
T ss_pred ceEEEEcCC-CCCHHHHHHHHHHhcccCCCceEEEecCC----------cEEEEECCHHHHHHHHHcC
Confidence 789999996 47889999999988 124578888886 5899999999999999765
No 120
>KOG4574 consensus RNA-binding protein (contains RRM and Pumilio-like repeats) [General function prediction only]
Probab=96.31 E-value=0.0022 Score=64.27 Aligned_cols=76 Identities=20% Similarity=0.253 Sum_probs=66.1
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRID 212 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~ 212 (231)
.+.++.|.+-+.+..-|..+|+.||.|.+++...+-+ .|.|+|.+.+.|..|+++|+|..+...+.+.+|.
T Consensus 299 p~~~~~nn~v~~tSssL~~l~s~yg~v~s~wtlr~~N---------~alvs~~s~~sai~a~dAl~gkevs~~g~Ps~V~ 369 (1007)
T KOG4574|consen 299 PKQSLENNAVNLTSSSLATLCSDYGSVASAWTLRDLN---------MALVSFSSVESAILALDALQGKEVSVTGAPSRVS 369 (1007)
T ss_pred chhhhhcccccchHHHHHHHHHhhcchhhheeccccc---------chhhhhHHHHHHHHhhhhhcCCcccccCCceeEE
Confidence 4566777788889999999999999999999877753 7999999999999999999999976666699999
Q ss_pred eecCC
Q 026915 213 VTGNL 217 (231)
Q Consensus 213 ~ak~~ 217 (231)
||+..
T Consensus 370 ~ak~~ 374 (1007)
T KOG4574|consen 370 FAKTL 374 (1007)
T ss_pred ecccc
Confidence 99854
No 121
>KOG1548 consensus Transcription elongation factor TAT-SF1 [Transcription]
Probab=96.26 E-value=0.018 Score=52.76 Aligned_cols=77 Identities=13% Similarity=0.285 Sum_probs=59.6
Q ss_pred CCCEEEEcCCCC----CCC-------HHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcC
Q 026915 131 ASSTLFVEGLPS----DCS-------RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQV 199 (231)
Q Consensus 131 ~~~tLfVgnLp~----~vt-------e~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G 199 (231)
..+||.|+|+=. +.+ +++|.+-+++||.|.+|.|.-. |+.| .+-|.|.+.++|..||+.|+|
T Consensus 264 ~~~tVi~kn~Ftp~~~~~~~~l~~dlkedl~eec~K~G~v~~vvv~d~---hPdG----vvtV~f~n~eeA~~ciq~m~G 336 (382)
T KOG1548|consen 264 ADRTVILKNMFTPEDFEKNPDLLNDLKEDLTEECEKFGQVRKVVVYDR---HPDG----VVTVSFRNNEEADQCIQTMDG 336 (382)
T ss_pred CCcEEEeeecCCHHHhccCHHHHHHHHHHHHHHHHHhCCcceEEEecc---CCCc----eeEEEeCChHHHHHHHHHhcC
Confidence 468899999843 344 4456677999999999866543 3335 999999999999999999999
Q ss_pred ceecCCcccEEEEeecC
Q 026915 200 KSCCAKSVPIRIDVTGN 216 (231)
Q Consensus 200 ~~l~g~~~~L~V~~ak~ 216 (231)
.-+.++ .|..+....
T Consensus 337 R~fdgR--ql~A~i~DG 351 (382)
T KOG1548|consen 337 RWFDGR--QLTASIWDG 351 (382)
T ss_pred eeecce--EEEEEEeCC
Confidence 999987 676665443
No 122
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=95.98 E-value=0.00047 Score=68.94 Aligned_cols=69 Identities=20% Similarity=0.255 Sum_probs=56.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceec
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCC 203 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~ 203 (231)
..++||+||+..+.+++|...|+++|.+..+++...+. .++.+|.|+|+|..+++|.+|+....++.+.
T Consensus 667 ~~~~fvsnl~~~~~~~dl~~~~~~~~~~e~vqi~~h~n---~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~g 735 (881)
T KOG0128|consen 667 LIKIFVSNLSPKMSEEDLSERFSPSGTIEVVQIVIHKN---EKRFRGKAYVEFLKPEHAGAAVAFRDSCFFG 735 (881)
T ss_pred HHHHHHhhcchhhcCchhhhhcCccchhhhHHHHHHhh---ccccccceeeEeecCCchhhhhhhhhhhhhh
Confidence 46899999999999999999999999988877763331 2556679999999999999999877665543
No 123
>KOG1365 consensus RNA-binding protein Fusilli, contains RRM domain [RNA processing and modification; General function prediction only]
Probab=95.97 E-value=0.017 Score=53.68 Aligned_cols=74 Identities=18% Similarity=0.297 Sum_probs=57.6
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCe-E--EEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCccc
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGY-K--EVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVP 208 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i-~--~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~ 208 (231)
...|-+++||++.+.|+|-++|..|..- + -|.++.+.. |+|.|=|||+|.+.+.|..|....+.+....+ -
T Consensus 280 kdcvRLRGLPy~AtvEdIL~FlgdFa~~i~f~gVHmv~N~q----GrPSGeAFIqm~nae~a~aaaqk~hk~~mk~R--Y 353 (508)
T KOG1365|consen 280 KDCVRLRGLPYEATVEDILDFLGDFATDIRFQGVHMVLNGQ----GRPSGEAFIQMRNAERARAAAQKCHKKLMKSR--Y 353 (508)
T ss_pred CCeeEecCCChhhhHHHHHHHHHHHhhhcccceeEEEEcCC----CCcChhhhhhhhhhHHHHHHHHHHHHhhcccc--e
Confidence 5679999999999999999999998752 2 266676654 45555899999999999999888777665433 4
Q ss_pred EEE
Q 026915 209 IRI 211 (231)
Q Consensus 209 L~V 211 (231)
|.|
T Consensus 354 iEv 356 (508)
T KOG1365|consen 354 IEV 356 (508)
T ss_pred EEE
Confidence 554
No 124
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=95.91 E-value=0.0085 Score=56.25 Aligned_cols=71 Identities=21% Similarity=0.337 Sum_probs=54.4
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCC--CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCce-ecCCcccE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFV--GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKS-CCAKSVPI 209 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG--~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~-l~g~~~~L 209 (231)
++||++||.+.++..+|+.+|..-. .-..+ |++. | |+||...+...|.+|++.|+|.. +.|. ++
T Consensus 2 nklyignL~p~~~psdl~svfg~ak~~~~g~f-l~k~------g----yafvd~pdq~wa~kaie~~sgk~elqGk--r~ 68 (584)
T KOG2193|consen 2 NKLYIGNLSPQVTPSDLESVFGDAKIPGSGQF-LVKS------G----YAFVDCPDQQWANKAIETLSGKVELQGK--RQ 68 (584)
T ss_pred CcccccccCCCCChHHHHHHhccccCCCCcce-eeec------c----eeeccCCchhhhhhhHHhhchhhhhcCc--ee
Confidence 5799999999999999999997641 11111 2221 3 99999999999999999999976 5543 78
Q ss_pred EEEeecC
Q 026915 210 RIDVTGN 216 (231)
Q Consensus 210 ~V~~ak~ 216 (231)
.|..+-.
T Consensus 69 e~~~sv~ 75 (584)
T KOG2193|consen 69 EVEHSVP 75 (584)
T ss_pred eccchhh
Confidence 8887644
No 125
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=95.80 E-value=0.028 Score=45.81 Aligned_cols=53 Identities=21% Similarity=0.300 Sum_probs=43.9
Q ss_pred HHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEEee
Q 026915 148 EVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRIDVT 214 (231)
Q Consensus 148 eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~a 214 (231)
+|-+.|..||++.=||++.+ .-.|+|.+-.+|.+|+. |+|.++.+. .|+|...
T Consensus 52 ~ll~~~~~~GevvLvRfv~~-----------~mwVTF~dg~sALaals-~dg~~v~g~--~l~i~LK 104 (146)
T PF08952_consen 52 ELLQKFAQYGEVVLVRFVGD-----------TMWVTFRDGQSALAALS-LDGIQVNGR--TLKIRLK 104 (146)
T ss_dssp HHHHHHHCCS-ECEEEEETT-----------CEEEEESSCHHHHHHHH-GCCSEETTE--EEEEEE-
T ss_pred HHHHHHHhCCceEEEEEeCC-----------eEEEEECccHHHHHHHc-cCCcEECCE--EEEEEeC
Confidence 57788999999888888776 47899999999999985 999999976 7888754
No 126
>KOG0112 consensus Large RNA-binding protein (RRM superfamily) [General function prediction only]
Probab=95.80 E-value=0.002 Score=64.92 Aligned_cols=78 Identities=19% Similarity=0.195 Sum_probs=64.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPI 209 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k-~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L 209 (231)
.+.|||++||+..+++.+|+..|..+|.|.+|.|-.-+ ..... |+||.|.+...+-.|+..+.+..|... .+
T Consensus 371 atrTLf~Gnl~~kl~eseiR~af~e~gkve~VDiKtP~~~~esa-----~~f~~~~n~dmtp~ak~e~s~~~I~~g--~~ 443 (975)
T KOG0112|consen 371 ATRTLFLGNLDSKLTESEIRPAFDESGKVEEVDIKTPHIKTESA-----YAFVSLLNTDMTPSAKFEESGPLIGNG--TH 443 (975)
T ss_pred hhhhhhhcCcccchhhhhhhhhhhhhccccccccccCCCCcccc-----hhhhhhhccccCcccchhhcCCccccC--cc
Confidence 57899999999999999999999999999988776553 11122 899999999999999999999887765 56
Q ss_pred EEEeec
Q 026915 210 RIDVTG 215 (231)
Q Consensus 210 ~V~~ak 215 (231)
++-+..
T Consensus 444 r~glG~ 449 (975)
T KOG0112|consen 444 RIGLGQ 449 (975)
T ss_pred cccccc
Confidence 666653
No 127
>KOG2202 consensus U2 snRNP splicing factor, small subunit, and related proteins [RNA processing and modification]
Probab=95.63 E-value=0.0056 Score=53.88 Aligned_cols=59 Identities=19% Similarity=0.316 Sum_probs=48.3
Q ss_pred Hhhc-CCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEEeec
Q 026915 151 HIFR-PFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRIDVTG 215 (231)
Q Consensus 151 ~lF~-~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~ak 215 (231)
..|+ +||+|.+++|..+..-|-.| =.+|.|...++|++|++.|||--+.++ +|..+|+-
T Consensus 87 ~E~~~kygEiee~~Vc~Nl~~hl~G----NVYV~f~~Ee~ae~a~~~lnnRw~~G~--pi~ae~~p 146 (260)
T KOG2202|consen 87 TELEDKYGEIEELNVCDNLGDHLVG----NVYVKFRSEEDAEAALEDLNNRWYNGR--PIHAELSP 146 (260)
T ss_pred HHHHHHhhhhhhhhhhcccchhhhh----hhhhhcccHHHHHHHHHHHcCccccCC--cceeeecC
Confidence 3344 89999998777665444444 799999999999999999999999987 99988874
No 128
>KOG0115 consensus RNA-binding protein p54nrb (RRM superfamily) [RNA processing and modification]
Probab=95.63 E-value=0.013 Score=51.78 Aligned_cols=61 Identities=21% Similarity=0.273 Sum_probs=51.8
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHh
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDAL 197 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L 197 (231)
..|||.||+.-++.+.|.+-|+.||.|....++.|.. |++.+=++|+|...-.|.+|+...
T Consensus 32 a~l~V~nl~~~~sndll~~~f~~fg~~e~av~~vD~r----~k~t~eg~v~~~~k~~a~~a~rr~ 92 (275)
T KOG0115|consen 32 AELYVVNLMQGASNDLLEQAFRRFGPIERAVAKVDDR----GKPTREGIVEFAKKPNARKAARRC 92 (275)
T ss_pred ceEEEEecchhhhhHHHHHhhhhcCccchheeeeccc----ccccccchhhhhcchhHHHHHHHh
Confidence 7899999999999999999999999998766666642 333347899999999999999877
No 129
>PF03467 Smg4_UPF3: Smg-4/UPF3 family; InterPro: IPR005120 Nonsense-mediated mRNA decay (NMD) is a surveillance mechanism by which eukaryotic cells detect and degrade transcripts containing premature termination codons. Three 'up-frameshift' proteins, UPF1, UPF2 and UPF3, are essential for this process in organisms ranging from yeast, human to plants []. Exon junction complexes (EJCs) are deposited ~24 nucleotides upstream of exon-exon junctions after splicing. Translation causes displacement of the EJCs, however, premature translation termination upstream of one or more EJCs triggers the recruitment of UPF1, UPF2 and UPF3 and activates the NMD pathway [, ]. This family contains UPF3. The crystal structure of the complex between human UPF2 and UPF3b, which are, respectively, a MIF4G (middle portion of eIF4G) domain and an RNP domain (ribonucleoprotein-type RNA-binding domain) has been determined to 1.95A. The protein-protein interface is mediated by highly conserved charged residues in UPF2 and UPF3b and involves the beta-sheet surface of the UPF3b ribonucleoprotein (RNP) domain, which is generally used by these domains to bind nucleic acids. In UPF3b the RNP domain does not bind RNA, whereas the UPF2 construct and the complex do. It is clear that some RNP domains have evolved for specific protein-protein interactions rather than as nucleic acid binding modules [].; PDB: 1UW4_A 2L08_A.
Probab=95.58 E-value=0.041 Score=46.06 Aligned_cols=83 Identities=12% Similarity=0.189 Sum_probs=52.1
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcC-CCCe---EEEEEeeCC-CCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRP-FVGY---KEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~-fG~i---~~v~l~~~k-~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
...+|.|++||++.||+++.+.+++ ++.- ..+.-.... +-... --.-|+|.|.+.++...-++.++|+.+...
T Consensus 6 ~~~KvVIR~LPP~LteeeF~~~i~~~l~~~~~w~y~~g~~~~~~~~~~--~~SRaYi~F~~~~~~~~F~~~~~g~~F~D~ 83 (176)
T PF03467_consen 6 EGTKVVIRRLPPNLTEEEFWEQISPWLPDEWDWYYFQGKYGKKSFKPP--TYSRAYINFKNPEDLLEFRDRFDGHVFVDS 83 (176)
T ss_dssp ---EEEEEEE-TTS-HHHHCCCCSS--SSE---EEEEEEES-SSSTTS----EEEEEEESSCHHHHHHHHHCTTEEEE-T
T ss_pred cCceEEEeCCCCCCCHHHHHHHhhhhcccccceEEEecCCCCccCCCC--cceEEEEEeCCHHHHHHHHHhcCCcEEECC
Confidence 3579999999999999999998887 6665 333311221 11111 112599999999999999999999885433
Q ss_pred -c--ccEEEEeec
Q 026915 206 -S--VPIRIDVTG 215 (231)
Q Consensus 206 -~--~~L~V~~ak 215 (231)
+ .+..|+||-
T Consensus 84 kg~~~~~~VE~Ap 96 (176)
T PF03467_consen 84 KGNEYPAVVEFAP 96 (176)
T ss_dssp TS-EEEEEEEE-S
T ss_pred CCCCcceeEEEcc
Confidence 2 256788884
No 130
>KOG2253 consensus U1 snRNP complex, subunit SNU71 and related PWI-motif proteins [RNA processing and modification]
Probab=95.37 E-value=0.028 Score=55.24 Aligned_cols=63 Identities=14% Similarity=0.040 Sum_probs=55.0
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
+.-++||+|+...+..+-++.+...||-|.+++.+. |+|.+|.....+..|+..|+-..++++
T Consensus 39 ~~~~vfv~~~~~~~s~~~~~~il~~~g~v~s~kr~~------------fgf~~f~~~~~~~ra~r~~t~~~~~~~ 101 (668)
T KOG2253|consen 39 PRDTVFVGNISYLVSQEFWKSILAKSGFVPSWKRDK------------FGFCEFLKHIGDLRASRLLTELNIDDQ 101 (668)
T ss_pred CCceeEecchhhhhhHHHHHHHHhhCCcchhhhhhh------------hcccchhhHHHHHHHHHHhcccCCCcc
Confidence 378999999999999999999999999887664332 899999999999999999988777766
No 131
>KOG4307 consensus RNA binding protein RBM12/SWAN [General function prediction only]
Probab=95.35 E-value=0.021 Score=56.52 Aligned_cols=82 Identities=21% Similarity=0.193 Sum_probs=59.7
Q ss_pred CCCCCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 127 LPPDASSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 127 ~p~~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~-v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
.|-.....|||..||+.+++.++...|+.--.|.+ |.|......+. .+-|||+|..++++.+|+..-+-+-+.
T Consensus 429 ~P~~ag~~lyv~~lP~~t~~~~~v~~f~~~~~Ved~I~lt~~P~~~~----~~~afv~F~~~~a~~~a~~~~~k~y~G-- 502 (944)
T KOG4307|consen 429 FPGGAGGALYVFQLPVMTPIVPPVNKFMGAAAVEDFIELTRLPTDLL----RPAAFVAFIHPTAPLTASSVKTKFYPG-- 502 (944)
T ss_pred CCCCccceEEeccCCccccccchhhhhhhhhhhhheeEeccCCcccc----cchhhheeccccccchhhhcccccccC--
Confidence 34456899999999999999999999998777766 66655543222 338999999999988887544333333
Q ss_pred cccEEEEee
Q 026915 206 SVPIRIDVT 214 (231)
Q Consensus 206 ~~~L~V~~a 214 (231)
.+.|+|.-.
T Consensus 503 ~r~irv~si 511 (944)
T KOG4307|consen 503 HRIIRVDSI 511 (944)
T ss_pred ceEEEeech
Confidence 457888643
No 132
>KOG1996 consensus mRNA splicing factor [RNA processing and modification]
Probab=95.22 E-value=0.053 Score=48.93 Aligned_cols=66 Identities=15% Similarity=0.115 Sum_probs=50.0
Q ss_pred HHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEEeec
Q 026915 146 RREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRIDVTG 215 (231)
Q Consensus 146 e~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~ak 215 (231)
++++++-+++||.|..|.|....+.- -+-..--||+|+..++|.+|+-.|||.-+.|+ .++..|-.
T Consensus 300 ede~keEceKyg~V~~viifeip~~p--~deavRiFveF~r~e~aiKA~VdlnGRyFGGr--~v~A~Fyn 365 (378)
T KOG1996|consen 300 EDETKEECEKYGKVGNVIIFEIPSQP--EDEAVRIFVEFERVESAIKAVVDLNGRYFGGR--VVSACFYN 365 (378)
T ss_pred HHHHHHHHHhhcceeeEEEEecCCCc--cchhheeeeeeccHHHHHHHHHhcCCceecce--eeeheecc
Confidence 44677889999999998777665210 00111479999999999999999999999987 67766653
No 133
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=94.82 E-value=0.016 Score=52.87 Aligned_cols=82 Identities=15% Similarity=0.253 Sum_probs=62.6
Q ss_pred CCEEEEcCCCCCCCHHHHH---HhhcCCCCeEEEEEeeCCC--CCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCc
Q 026915 132 SSTLFVEGLPSDCSRREVA---HIFRPFVGYKEVRLVSKES--RHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKS 206 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~---~lF~~fG~i~~v~l~~~k~--~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~ 206 (231)
.+-+||-+|+..+..+++- +.|.+||.|.+|.+..+.+ ...++-+ -++|+|+..++|..||...+|..+.++
T Consensus 77 knlvyvvgl~~~~ade~~l~~~eyfgqygki~ki~~~~~~S~~s~~~~~~--s~yITy~~~eda~rci~~v~g~~~dg~- 153 (327)
T KOG2068|consen 77 KNLVYVVGLPLDLADESVLERTEYFGQYGKINKIVKNKDPSSSSSSGGTC--SVYITYEEEEDADRCIDDVDGFVDDGR- 153 (327)
T ss_pred hhhhhhhCCCccccchhhhhCcccccccccceEEeecCCcccccCCCCCC--cccccccchHhhhhHHHHhhhHHhhhh-
Confidence 4668899999887666544 5799999999998777652 1122222 289999999999999999999999877
Q ss_pred ccEEEEeecCC
Q 026915 207 VPIRIDVTGNL 217 (231)
Q Consensus 207 ~~L~V~~ak~~ 217 (231)
.|+..++..+
T Consensus 154 -~lka~~gttk 163 (327)
T KOG2068|consen 154 -ALKASLGTTK 163 (327)
T ss_pred -hhHHhhCCCc
Confidence 6777777554
No 134
>PF15023 DUF4523: Protein of unknown function (DUF4523)
Probab=94.74 E-value=0.14 Score=41.74 Aligned_cols=71 Identities=18% Similarity=0.195 Sum_probs=54.8
Q ss_pred CCEEEEcCCCCCCC-HHHHHH---hhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcc
Q 026915 132 SSTLFVEGLPSDCS-RREVAH---IFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSV 207 (231)
Q Consensus 132 ~~tLfVgnLp~~vt-e~eL~~---lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~ 207 (231)
-.||.|+-|..++. .+||+. -++.||.|.+|.+.-.. -|.|.|.+..+|=+|+.+++... .+.
T Consensus 86 MsTIVVRWlkknm~~~edl~sV~~~Ls~fGpI~SVT~cGrq----------savVvF~d~~SAC~Av~Af~s~~-pgt-- 152 (166)
T PF15023_consen 86 MSTIVVRWLKKNMQPTEDLKSVIQRLSVFGPIQSVTLCGRQ----------SAVVVFKDITSACKAVSAFQSRA-PGT-- 152 (166)
T ss_pred ceeEEeehhhhcCChHHHHHHHHHHHHhcCCcceeeecCCc----------eEEEEehhhHHHHHHHHhhcCCC-CCc--
Confidence 68999999988864 345554 57889999999765432 69999999999999999998743 333
Q ss_pred cEEEEeec
Q 026915 208 PIRIDVTG 215 (231)
Q Consensus 208 ~L~V~~ak 215 (231)
.++++|-.
T Consensus 153 m~qCsWqq 160 (166)
T PF15023_consen 153 MFQCSWQQ 160 (166)
T ss_pred eEEeeccc
Confidence 67888864
No 135
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=94.30 E-value=0.11 Score=43.92 Aligned_cols=62 Identities=19% Similarity=0.136 Sum_probs=45.6
Q ss_pred CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhc--CceecCCcccEEEEeecCC
Q 026915 145 SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQ--VKSCCAKSVPIRIDVTGNL 217 (231)
Q Consensus 145 te~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~--G~~l~g~~~~L~V~~ak~~ 217 (231)
..+.|+++|..|+.+.+...++.- + -..|.|.+.+.|+.|...|+ +..+.+. .|+|.|+...
T Consensus 8 ~~~~l~~l~~~~~~~~~~~~L~sF-----r----Ri~v~f~~~~~A~~~r~~l~~~~~~~~g~--~l~~yf~~~~ 71 (184)
T PF04847_consen 8 NLAELEELFSTYDPPVQFSPLKSF-----R----RIRVVFESPESAQRARQLLHWDGTSFNGK--RLRVYFGQPT 71 (184)
T ss_dssp -HHHHHHHHHTT-SS-EEEEETTT-----T----EEEEE-SSTTHHHHHHHTST--TSEETTE--E-EEE----S
T ss_pred hHHHHHHHHHhcCCceEEEEcCCC-----C----EEEEEeCCHHHHHHHHHHhcccccccCCC--ceEEEEcccc
Confidence 457899999999999888766654 1 58999999999999999999 9999987 8999999643
No 136
>PF07576 BRAP2: BRCA1-associated protein 2; InterPro: IPR011422 These proteins include BRCA1-associated protein 2 (BRAP2), which binds nuclear localisation signals (NLSs) in vitro and in yeast two-hybrid screening []. These proteins share a region of sequence similarity at their N terminus. They also have IPR001607 from INTERPRO at the C terminus.
Probab=93.99 E-value=1 Score=35.00 Aligned_cols=76 Identities=9% Similarity=0.125 Sum_probs=53.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCC-eEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCcee---cCCccc
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVG-YKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSC---CAKSVP 208 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~-i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l---~g~~~~ 208 (231)
..+.+-..|.-++-++|..+.+++-. |..++|+++.... +-.+.+.|.+.+.|.+-...+||..+ ..+ .
T Consensus 14 ~~~~l~vp~~~~~~d~l~~f~~~~~~~i~~~riird~~pn-----rymVLikF~~~~~Ad~Fy~~fNGk~FnslEpE--~ 86 (110)
T PF07576_consen 14 TLCCLAVPPYMTPSDFLLFFGAPFREDIEHIRIIRDGTPN-----RYMVLIKFRDQESADEFYEEFNGKPFNSLEPE--T 86 (110)
T ss_pred eEEEEEeCcccccHHHHHHhhhcccccEEEEEEeeCCCCc-----eEEEEEEECCHHHHHHHHHHhCCCccCCCCCc--e
Confidence 44445556666677778777777664 5678898886322 22689999999999999999999984 444 4
Q ss_pred EEEEeec
Q 026915 209 IRIDVTG 215 (231)
Q Consensus 209 L~V~~ak 215 (231)
++|-|-+
T Consensus 87 ChvvfV~ 93 (110)
T PF07576_consen 87 CHVVFVK 93 (110)
T ss_pred eEEEEEE
Confidence 5555543
No 137
>KOG4660 consensus Protein Mei2, essential for commitment to meiosis, and related proteins [Cell cycle control, cell division, chromosome partitioning]
Probab=93.72 E-value=0.12 Score=49.99 Aligned_cols=82 Identities=15% Similarity=0.185 Sum_probs=59.4
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhc----------------------------CCCCeEEEEEeeCC-CCCCCCCcceEEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFR----------------------------PFVGYKEVRLVSKE-SRHPGGDPLILCFV 182 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~----------------------------~fG~i~~v~l~~~k-~~~~~G~~kg~aFV 182 (231)
.+++-|+|||..-+..+|..|.. ..|...-+.|+.|- +++..| ||||
T Consensus 361 Rtt~~i~ni~n~~~~~dl~~Ildge~~rtt~~iknipNK~T~~ml~~~d~~~~gtYDFlYLPiDF~nkcNvG----YAFI 436 (549)
T KOG4660|consen 361 RTTVMIKNIPNKYGQLDLLRILDGECPRTTLMIKNIPNKYTSKMLLAADEKNKGTYDFLYLPIDFKNKCNVG----YAFI 436 (549)
T ss_pred hhhhhhhccccchhHHHHHHHHhCcCchhhhHhhccCchhhHHhhhhhhccccCccceEEeccccccccccc----eeEE
Confidence 45666777776666666555432 24555566677765 556656 9999
Q ss_pred EeCCHHHHHHHHHHhcCce---ecCCcccEEEEeecCCC
Q 026915 183 DFVSPAHAATAMDALQVKS---CCAKSVPIRIDVTGNLT 218 (231)
Q Consensus 183 eF~~~~~A~~Al~~L~G~~---l~g~~~~L~V~~ak~~~ 218 (231)
.|.+++.+..+.++.||++ +.. .+.+.|.||+-..
T Consensus 437 Nm~sp~ai~~F~kAFnGk~W~~FnS-~Kia~itYArIQG 474 (549)
T KOG4660|consen 437 NMTSPEAIIRFYKAFNGKKWEKFNS-EKIASITYARIQG 474 (549)
T ss_pred eecCHHHHHHHHHHHcCCchhhhcc-eeeeeeehhhhhc
Confidence 9999999999999999988 553 3578999997644
No 138
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=93.70 E-value=0.36 Score=34.37 Aligned_cols=67 Identities=19% Similarity=0.356 Sum_probs=40.1
Q ss_pred EEEEc-CCCCCCCHHHHHHhhcCCCCe-----EEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcc
Q 026915 134 TLFVE-GLPSDCSRREVAHIFRPFVGY-----KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSV 207 (231)
Q Consensus 134 tLfVg-nLp~~vte~eL~~lF~~fG~i-----~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~ 207 (231)
+|||. +--..++..+|..++..-+.| -.|+|..+ |+||+-.. +.|+.+++.|++..+.++
T Consensus 2 rl~in~Gr~dg~~~~~iv~~i~~~~gi~~~~IG~I~I~~~-----------~S~vev~~-~~a~~v~~~l~~~~~~gk-- 67 (74)
T PF03880_consen 2 RLFINVGRKDGLTPRDIVGAICNEAGIPGRDIGRIDIFDN-----------FSFVEVPE-EVAEKVLEALNGKKIKGK-- 67 (74)
T ss_dssp EEEES-SGGGT--HHHHHHHHHTCTTB-GGGEEEEEE-SS------------EEEEE-T-T-HHHHHHHHTT--SSS---
T ss_pred EEEEEcccccCCCHHHHHHHHHhccCCCHHhEEEEEEeee-----------EEEEEECH-HHHHHHHHHhcCCCCCCe--
Confidence 45552 333458888998888887665 36766655 89999865 588999999999999987
Q ss_pred cEEEEee
Q 026915 208 PIRIDVT 214 (231)
Q Consensus 208 ~L~V~~a 214 (231)
.|+|+.|
T Consensus 68 ~v~ve~A 74 (74)
T PF03880_consen 68 KVRVERA 74 (74)
T ss_dssp ---EEE-
T ss_pred eEEEEEC
Confidence 8888754
No 139
>KOG2591 consensus c-Mpl binding protein, contains La domain [Signal transduction mechanisms]
Probab=92.57 E-value=0.37 Score=46.95 Aligned_cols=65 Identities=15% Similarity=0.230 Sum_probs=53.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcC--CCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHH-------hcCce
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRP--FVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA-------LQVKS 201 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~--fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~-------L~G~~ 201 (231)
..|.|.++-||.++-.|+++.||+. |-.+.+|.+..+. -=||+|++..+|+.|... ++|+.
T Consensus 174 kRcIvilREIpettp~e~Vk~lf~~encPk~iscefa~N~----------nWyITfesd~DAQqAykylreevk~fqgKp 243 (684)
T KOG2591|consen 174 KRCIVILREIPETTPIEVVKALFKGENCPKVISCEFAHND----------NWYITFESDTDAQQAYKYLREEVKTFQGKP 243 (684)
T ss_pred ceeEEEEeecCCCChHHHHHHHhccCCCCCceeeeeeecC----------ceEEEeecchhHHHHHHHHHHHHHhhcCcc
Confidence 3577888999999999999999975 8888899887775 259999999999999755 45666
Q ss_pred ecCC
Q 026915 202 CCAK 205 (231)
Q Consensus 202 l~g~ 205 (231)
|..+
T Consensus 244 ImAR 247 (684)
T KOG2591|consen 244 IMAR 247 (684)
T ss_pred hhhh
Confidence 6654
No 140
>KOG2318 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.04 E-value=1.6 Score=42.82 Aligned_cols=85 Identities=13% Similarity=0.172 Sum_probs=63.4
Q ss_pred CCCCEEEEcCCCCC-CCHHHHHHhhcCC----CCeEEEEEeeCC-CCCC------CCC----------------------
Q 026915 130 DASSTLFVEGLPSD-CSRREVAHIFRPF----VGYKEVRLVSKE-SRHP------GGD---------------------- 175 (231)
Q Consensus 130 ~~~~tLfVgnLp~~-vte~eL~~lF~~f----G~i~~v~l~~~k-~~~~------~G~---------------------- 175 (231)
+.++.|-|.|+.|+ +.-++|.-+|+.| |.|.+|.|.... .+-+ .|-
T Consensus 172 ~~T~RLAVvNMDWd~v~AkDL~v~~nSFlP~gGsilSV~IYpSeFGkeRM~eEeV~GP~~el~~~~e~~~~s~sD~ee~~ 251 (650)
T KOG2318|consen 172 EETKRLAVVNMDWDRVKAKDLFVLFNSFLPKGGSILSVKIYPSEFGKERMKEEEVHGPPKELFKPVEEYKESESDDEEEE 251 (650)
T ss_pred cccceeeEeccccccccHHHHHHHHHhhcCCCCceeEEEechhhhhHHHhhhhcccCChhhhccccccCcccccchhhhh
Confidence 45789999999998 8899999998877 468888876533 1000 010
Q ss_pred --------------c-ceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEEee
Q 026915 176 --------------P-LILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRIDVT 214 (231)
Q Consensus 176 --------------~-kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~a 214 (231)
. --||.|+|.+.+.|.+.....+|..+...+..|-+.|-
T Consensus 252 ~~~~~kLR~Yq~~rLkYYyAVvecDsi~tA~~vYe~CDG~EfEsS~~~~DLRFI 305 (650)
T KOG2318|consen 252 DVDREKLRQYQLNRLKYYYAVVECDSIETAKAVYEECDGIEFESSANKLDLRFI 305 (650)
T ss_pred hHHHHHHHHHHhhhheeEEEEEEecCchHHHHHHHhcCcceeccccceeeeeec
Confidence 0 13699999999999999999999998866445666664
No 141
>KOG4285 consensus Mitotic phosphoprotein [Cell cycle control, cell division, chromosome partitioning]
Probab=86.95 E-value=1.2 Score=40.48 Aligned_cols=70 Identities=17% Similarity=0.144 Sum_probs=49.7
Q ss_pred CEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEE
Q 026915 133 STLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRID 212 (231)
Q Consensus 133 ~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~ 212 (231)
..|-|=+.|..- -..|..+|++||+|++.... .+ +. |-.|.|.++-+|.+||. .+|..|++. .-|-|.
T Consensus 198 ~WVTVfGFppg~-~s~vL~~F~~cG~Vvkhv~~--~n---gN----wMhirYssr~~A~KALs-kng~ii~g~-vmiGVk 265 (350)
T KOG4285|consen 198 TWVTVFGFPPGQ-VSIVLNLFSRCGEVVKHVTP--SN---GN----WMHIRYSSRTHAQKALS-KNGTIIDGD-VMIGVK 265 (350)
T ss_pred ceEEEeccCccc-hhHHHHHHHhhCeeeeeecC--CC---Cc----eEEEEecchhHHHHhhh-hcCeeeccc-eEEeee
Confidence 345555676653 35677899999999876544 21 12 99999999999999996 788888875 234454
Q ss_pred ee
Q 026915 213 VT 214 (231)
Q Consensus 213 ~a 214 (231)
-+
T Consensus 266 pC 267 (350)
T KOG4285|consen 266 PC 267 (350)
T ss_pred ec
Confidence 43
No 142
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=86.88 E-value=3 Score=39.84 Aligned_cols=67 Identities=16% Similarity=0.299 Sum_probs=56.9
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCC-CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceec
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFV-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCC 203 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG-~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~ 203 (231)
++.|+|=-+|..+|-.||-.+...|- .|.+++++++....+- ...|.|.+.++|..-.+.+||..++
T Consensus 74 ~~mLcilaVP~~mt~~Dll~F~~~~~~~I~~irivRd~~pnry-----mvLIkFr~q~da~~Fy~efNGk~Fn 141 (493)
T KOG0804|consen 74 STMLCILAVPAYMTSHDLLRFCASFIKQISDIRIVRDGMPNRY-----MVLIKFRDQADADTFYEEFNGKQFN 141 (493)
T ss_pred CcEEEEEeccccccHHHHHHHHHHHhhhhheeEEeecCCCceE-----EEEEEeccchhHHHHHHHcCCCcCC
Confidence 78999999999999999999887654 5789999997633222 6899999999999999999999854
No 143
>KOG0226 consensus RNA-binding proteins [General function prediction only]
Probab=85.99 E-value=0.093 Score=46.44 Aligned_cols=68 Identities=13% Similarity=0.184 Sum_probs=53.6
Q ss_pred CCCCCC---CCCcccCcccccccccccCCCCCCCcccccchhhhhccCC--CCCCCCC-CCCCCCCCCCCCCCCCCCC
Q 026915 27 RTDYDV---PSGHELSSYYTRDDDRGALRGMRDTDSLGASYDRYLRSAQ--ISSYSGG-QSARHMSGGMPSRPVDDPR 98 (231)
Q Consensus 27 ~~~~~~---~~~~~~~~y~~~~~~r~~~~~~~~~~~~~~~~d~~~~~~~--~~s~~~g-~~~r~~~Gg~~g~~~~~~~ 98 (231)
..||-| |+++||+|-++--.|+. |+++-.+|||.+.=+ ..+++ |.||-+- ...|+|. +|+|-+++++.
T Consensus 188 ~~DfRIfcgdlgNevnd~vl~raf~K-fpsf~~akviRdkRT--gKSkgygfVSf~~pad~~rAmr-em~gkyVgsrp 261 (290)
T KOG0226|consen 188 EDDFRIFCGDLGNEVNDDVLARAFKK-FPSFQKAKVIRDKRT--GKSKGYGFVSFRDPADYVRAMR-EMNGKYVGSRP 261 (290)
T ss_pred cccceeecccccccccHHHHHHHHHh-ccchhhccccccccc--cccccceeeeecCHHHHHHHHH-hhcccccccch
Confidence 447777 79999999999888875 999999999985443 57776 6678774 5557898 99999988754
No 144
>KOG2891 consensus Surface glycoprotein [General function prediction only]
Probab=85.91 E-value=0.61 Score=42.07 Aligned_cols=90 Identities=20% Similarity=0.276 Sum_probs=58.7
Q ss_pred CCCCCCEEEEcCCCCC------------CCHHHHHHhhcCCCCeEEEEEeeC-C-----CC-CCCCCcceEE--------
Q 026915 128 PPDASSTLFVEGLPSD------------CSRREVAHIFRPFVGYKEVRLVSK-E-----SR-HPGGDPLILC-------- 180 (231)
Q Consensus 128 p~~~~~tLfVgnLp~~------------vte~eL~~lF~~fG~i~~v~l~~~-k-----~~-~~~G~~kg~a-------- 180 (231)
|-+...|||+.+||.. -+++-|+..|..||.|..|.|+.- . ++ .++=+.+||+
T Consensus 145 pgerpdti~la~ip~kwf~lkedg~~dlpse~rlr~a~eafg~ir~vdipicdplr~~mn~kisgiq~~gfg~g~dlffe 224 (445)
T KOG2891|consen 145 PGERPDTIHLAGIPCKWFALKEDGSEDLPSEDRLRKAFEAFGEIRNVDIPICDPLREEMNGKISGIQFHGFGFGGDLFFE 224 (445)
T ss_pred CCCCCCceeecCCcceeeeecccccccCChHHHHHHHHHHhccceecCCcccchhHHHhcCccccceeeccccCcchhHH
Confidence 3334578888888842 467789999999999988876531 1 22 2221345554
Q ss_pred -EEEeCCHHHHHHHHHHhcCceec----CC--cccEEEEeecCC
Q 026915 181 -FVDFVSPAHAATAMDALQVKSCC----AK--SVPIRIDVTGNL 217 (231)
Q Consensus 181 -FVeF~~~~~A~~Al~~L~G~~l~----g~--~~~L~V~~ak~~ 217 (231)
||+|-....-..|+.+|.|.++. +. ...++|.|.++.
T Consensus 225 ayvqfmeykgfa~amdalr~~k~akk~d~~ffqanvkvdfdrsr 268 (445)
T KOG2891|consen 225 AYVQFMEYKGFAQAMDALRGMKLAKKGDDGFFQANVKVDFDRSR 268 (445)
T ss_pred HHHHHHHHHhHHHHHHHHhcchHHhhcCCcccccccccccchhh
Confidence 46666666777889999987732 11 136788887654
No 145
>KOG2135 consensus Proteins containing the RNA recognition motif [General function prediction only]
Probab=85.24 E-value=0.75 Score=44.01 Aligned_cols=73 Identities=18% Similarity=0.132 Sum_probs=57.5
Q ss_pred CCEEEEcCCCCCC-CHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 132 SSTLFVEGLPSDC-SRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 132 ~~tLfVgnLp~~v-te~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.+.|=+.-.|+.. +-.+|...|.+||.|..|.+-... . -|.|+|.+..+|-+|. ..++..|+.+ .|+
T Consensus 372 hs~l~lek~~~glnt~a~ln~hfA~fG~i~n~qv~~~~-~--------~a~vTF~t~aeag~a~-~s~~avlnnr--~iK 439 (526)
T KOG2135|consen 372 HSPLALEKSPFGLNTIADLNPHFAQFGEIENIQVDYSS-L--------HAVVTFKTRAEAGEAY-ASHGAVLNNR--FIK 439 (526)
T ss_pred cchhhhhccCCCCchHhhhhhhhhhcCccccccccCch-h--------hheeeeeccccccchh-ccccceecCc--eeE
Confidence 4566666677664 567899999999999988765552 1 5899999999997775 4788899976 899
Q ss_pred EEeecC
Q 026915 211 IDVTGN 216 (231)
Q Consensus 211 V~~ak~ 216 (231)
|-|-+.
T Consensus 440 l~whnp 445 (526)
T KOG2135|consen 440 LFWHNP 445 (526)
T ss_pred EEEecC
Confidence 999875
No 146
>KOG4210 consensus Nuclear localization sequence binding protein [Transcription]
Probab=84.76 E-value=0.79 Score=41.30 Aligned_cols=72 Identities=19% Similarity=0.059 Sum_probs=57.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
..+++|++++.+++.+.++..+|...|....+.+..... ....++++.|.|...+.+..|+.....+.+..+
T Consensus 87 ~~~~~f~g~~s~~~e~~~~~~~~~~~g~~~~~~~S~~~~---~~~sk~~~s~~f~~ks~~~~~l~~s~~~~~~~~ 158 (285)
T KOG4210|consen 87 SSSTFFVGELSENIEESEDDNFSSEAGLRVDARSSSLED---SLSSKGGLSVHFAGKSQFFAALEESGSKVLDGN 158 (285)
T ss_pred ccccccccccccchhhccccccchhhcCcccchhhhhcc---ccccccceeeccccHHHHHHHHHhhhccccccc
Confidence 468999999999999999999999999888777666441 134556999999999999999976555555544
No 147
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=83.46 E-value=4.8 Score=28.40 Aligned_cols=50 Identities=12% Similarity=0.177 Sum_probs=40.1
Q ss_pred CCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecC
Q 026915 143 DCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCA 204 (231)
Q Consensus 143 ~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g 204 (231)
.++-++++..+..|.- .+|..+++ | =||.|.+..+|++|....+|..+..
T Consensus 11 ~~~v~d~K~~Lr~y~~---~~I~~d~t----G-----fYIvF~~~~Ea~rC~~~~~~~~~f~ 60 (66)
T PF11767_consen 11 GVTVEDFKKRLRKYRW---DRIRDDRT----G-----FYIVFNDSKEAERCFRAEDGTLFFT 60 (66)
T ss_pred CccHHHHHHHHhcCCc---ceEEecCC----E-----EEEEECChHHHHHHHHhcCCCEEEE
Confidence 4677899999999973 34456653 3 5899999999999999999988764
No 148
>KOG2193 consensus IGF-II mRNA-binding protein IMP, contains RRM and KH domains [RNA processing and modification; General function prediction only]
Probab=78.40 E-value=0.098 Score=49.36 Aligned_cols=77 Identities=9% Similarity=0.184 Sum_probs=63.7
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEE
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIR 210 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~ 210 (231)
.++++-|+|+|....++-|..|..+||.+..|..+...+..- .--|+|.+.+.+..||..|+|.++... .++
T Consensus 79 rsrk~Qirnippql~wevld~Ll~qyg~ve~~eqvnt~~eta------vvnvty~~~~~~~~ai~kl~g~Q~en~--~~k 150 (584)
T KOG2193|consen 79 RSRKIQIRNIPPQLQWEVLDSLLAQYGTVENCEQVNTDSETA------VVNVTYSAQQQHRQAIHKLNGPQLENQ--HLK 150 (584)
T ss_pred HhhhhhHhcCCHHHHHHHHHHHHhccCCHhHhhhhccchHHH------HHHHHHHHHHHHHHHHHhhcchHhhhh--hhh
Confidence 467899999999999999999999999999887655442211 345789999999999999999999866 788
Q ss_pred EEeec
Q 026915 211 IDVTG 215 (231)
Q Consensus 211 V~~ak 215 (231)
|.|--
T Consensus 151 ~~YiP 155 (584)
T KOG2193|consen 151 VGYIP 155 (584)
T ss_pred cccCc
Confidence 88853
No 149
>KOG4676 consensus Splicing factor, arginine/serine-rich [RNA processing and modification]
Probab=72.31 E-value=0.82 Score=42.88 Aligned_cols=67 Identities=16% Similarity=0.060 Sum_probs=53.3
Q ss_pred CCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 131 ASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 131 ~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
...||+|++|+..+-..++-++|..+|+|...++..+.... +|-|+|........|+. ++|..+.-+
T Consensus 150 irRt~~v~sl~~~~~l~e~~e~f~r~Gev~ya~~ask~~s~-------~c~~sf~~qts~~halr-~~gre~k~q 216 (479)
T KOG4676|consen 150 IRRTREVQSLISAAILPESGESFERKGEVSYAHTASKSRSS-------SCSHSFRKQTSSKHALR-SHGRERKRQ 216 (479)
T ss_pred HHhhhhhhcchhhhcchhhhhhhhhcchhhhhhhhccCCCc-------chhhhHhhhhhHHHHHH-hcchhhhhh
Confidence 35789999999999999999999999998877766554211 78899999888888875 566665533
No 150
>PF03468 XS: XS domain; InterPro: IPR005380 The XS (rice gene X and SGS3) domain is found in a family of plant proteins including gene X Q9SBW2 from SWISSPROT and SGS3 Q9LDX1 from SWISSPROT. SGS3 is thought to be involved in post-transcriptional gene silencing (PTGS). This domain contains a conserved aspartate residue that may be functionally important. The XS domain containing proteins contain coiled-coils, which suggests that they will oligomerise. Most coiled-coil proteins form either a dimeric or a trimeric structure. It is possible that different members of the XS domain family could oligomerise via their coiled-coils forming a variety of complexes [].; PDB: 4E8U_C.
Probab=63.32 E-value=6.8 Score=30.57 Aligned_cols=56 Identities=20% Similarity=0.255 Sum_probs=30.2
Q ss_pred CEEEEcCCCCC---------CCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHH-HHHH
Q 026915 133 STLFVEGLPSD---------CSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHA-ATAM 194 (231)
Q Consensus 133 ~tLfVgnLp~~---------vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A-~~Al 194 (231)
.++.|-|++.. .+.++|++.|+.|..++ ++.+.++.+|. |++.|+|..--.. ..|+
T Consensus 9 wmgIi~N~~~~~~~~g~~~g~~~~~l~~~l~~f~p~k-v~~l~~~~gh~-----g~aiv~F~~~w~Gf~~A~ 74 (116)
T PF03468_consen 9 WMGIIVNIPTEKDDDGRWVGMSNEELLDKLAEFNPLK-VKPLYGKQGHT-----GFAIVEFNKDWSGFKNAM 74 (116)
T ss_dssp -EEEEE----EE-TTS-EE---SHHHHHHHHH---SE-EEEEEETTEEE-----EEEEEE--SSHHHHHHHH
T ss_pred CEEEEEcCccccCCCCceeccCHHHHHHHHHhcCCce-eEECcCCCCCc-----EEEEEEECCChHHHHHHH
Confidence 45667777654 35678999999999875 66666664444 3999999985543 3444
No 151
>KOG4019 consensus Calcineurin-mediated signaling pathway inhibitor DSCR1 [Signal transduction mechanisms; General function prediction only]
Probab=60.54 E-value=9.6 Score=32.30 Aligned_cols=76 Identities=16% Similarity=0.187 Sum_probs=55.0
Q ss_pred CEEEEcCCCCCCC-HH----HHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcc
Q 026915 133 STLFVEGLPSDCS-RR----EVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSV 207 (231)
Q Consensus 133 ~tLfVgnLp~~vt-e~----eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~ 207 (231)
+++++.+++.++- +. ..+.+|.+|-+.....+++.. + +--|.|.+++.|+.|.-.++.+.+.+..
T Consensus 11 ~~~~~c~i~~~VF~~~~~k~~~~~lFrq~n~~~~fq~lrsf-----r----rvRi~f~~p~~a~~a~i~~~~~~f~~~~- 80 (193)
T KOG4019|consen 11 TAIIACDIHEEVFVNREDKALFENLFRQINEDATFQLLRSF-----R----RVRINFSNPEAAADARIKLHSTSFNGKN- 80 (193)
T ss_pred ceeeeecccHHhhccHHHHHHHHhHHhhhCcchHHHHHHhh-----c----eeEEeccChhHHHHHHHHhhhcccCCCc-
Confidence 7788999998742 22 344677766655444444443 1 5679999999999999999999998763
Q ss_pred cEEEEeecCCC
Q 026915 208 PIRIDVTGNLT 218 (231)
Q Consensus 208 ~L~V~~ak~~~ 218 (231)
.|+.-|+....
T Consensus 81 ~~k~yfaQ~~~ 91 (193)
T KOG4019|consen 81 ELKLYFAQPGH 91 (193)
T ss_pred eEEEEEccCCC
Confidence 68888887654
No 152
>KOG2295 consensus C2H2 Zn-finger protein [General function prediction only]
Probab=59.55 E-value=1.8 Score=42.33 Aligned_cols=70 Identities=16% Similarity=0.169 Sum_probs=54.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCC-CCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKE-SRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k-~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
.++|||+|++++++-.+|..+++.+-.+..+-+.... .+.. +-+..|+|.---.-..|+.+||+..+...
T Consensus 231 e~sll~rni~Pnis~aeIe~~ck~i~~~lrfals~~~aek~~----~r~lwv~fk~~~ni~~a~~aLn~irl~s~ 301 (648)
T KOG2295|consen 231 ECSLLVRNILPNISVAEIENLCKGIPGFLRFALSTINAEKNF----ERRLWVTFKRGTNIKEACWALNGIRLRSN 301 (648)
T ss_pred HHHHHHhccCCcccHHHHHHHhccCchheeeeccCchHHHHH----HHHhhHhhccccchHHHHHHhhhcccccc
Confidence 4679999999999999999999999888777655443 1111 11678999988888889999999887654
No 153
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=57.88 E-value=15 Score=30.12 Aligned_cols=64 Identities=20% Similarity=0.255 Sum_probs=43.8
Q ss_pred CCCCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 026915 130 DASSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (231)
Q Consensus 130 ~~~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~ 196 (231)
.....+++.+++..++..++..+|..+|.+..+.+...... ..+..+.++.+.....+..++..
T Consensus 223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~ 286 (306)
T COG0724 223 EKSDNLYVGNLPLKTAEEELADLFKSRGDIVRASLPPSKDG---KIPKSRSFVGNEASKDALESNSR 286 (306)
T ss_pred cccceeeccccccccchhHHHHhccccccceeeeccCCCCC---cccccccccchhHHHhhhhhhcc
Confidence 35789999999999999999999999999977766665421 11222444555444444444443
No 154
>PF10567 Nab6_mRNP_bdg: RNA-recognition motif; InterPro: IPR018885 This conserved domain is found in fungal proteins and appears to be involved in RNA-processing. It binds to poly-adenylated RNA, interacts genetically with mRNA 3'-end processing factors, co-purifies with the nuclear cap-binding protein Cbp20p, and is found in complexes containing other translation factors, such as EIF4G as in P39935 from SWISSPROT and P39936 from SWISSPROT.
Probab=57.68 E-value=22 Score=32.37 Aligned_cols=82 Identities=10% Similarity=0.141 Sum_probs=57.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCC--CC--CCCcceEEEEEeCCHHHHHHH----HHHhcCce--
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESR--HP--GGDPLILCFVDFVSPAHAATA----MDALQVKS-- 201 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~--~~--~G~~kg~aFVeF~~~~~A~~A----l~~L~G~~-- 201 (231)
++.|...|+..+++=..+-.-|-+||.|.+|.++.+... .. --...-.+.+.|-+++.+..- ++.|...+
T Consensus 15 TRSLLfeNv~~sidLh~Fl~~fv~~~pIESiYL~~~~~~~~d~~~~d~~~~SilLSFlsr~~CLdFYNnvLQrLsEfK~~ 94 (309)
T PF10567_consen 15 TRSLLFENVNNSIDLHSFLTKFVKFGPIESIYLIKSNDKPSDDYNDDKNNQSILLSFLSREICLDFYNNVLQRLSEFKTK 94 (309)
T ss_pred eHHHHHhhccccccHHHHHHHhhccCceeEEEEecCCCcccccccccccceEEEEeeechHHHHHHHHHHHHHHHHHHHh
Confidence 467889999999999999999999999999999987500 00 001122788999988775432 33343333
Q ss_pred ecCCcccEEEEeec
Q 026915 202 CCAKSVPIRIDVTG 215 (231)
Q Consensus 202 l~g~~~~L~V~~ak 215 (231)
+.. ..|.|+|..
T Consensus 95 L~S--~~L~lsFV~ 106 (309)
T PF10567_consen 95 LKS--ESLTLSFVS 106 (309)
T ss_pred cCC--cceeEEEEE
Confidence 454 488998875
No 155
>KOG4008 consensus rRNA processing protein RRP7 [RNA processing and modification]
Probab=53.91 E-value=6.5 Score=34.62 Aligned_cols=32 Identities=13% Similarity=0.222 Sum_probs=28.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVR 163 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~ 163 (231)
..+||+-|+|..+|++.|.++.+++|.+.++.
T Consensus 40 Kd~lfl~Nvp~~~tee~lkr~vsqlg~vq~~~ 71 (261)
T KOG4008|consen 40 KDCLFLVNVPLLSTEEHLKRFVSQLGHVQELL 71 (261)
T ss_pred ccceeeecccccccHHHHHHHHHHhhhhhhee
Confidence 68899999999999999999999999665443
No 156
>KOG4410 consensus 5-formyltetrahydrofolate cyclo-ligase [Coenzyme transport and metabolism]
Probab=53.37 E-value=15 Score=33.45 Aligned_cols=50 Identities=18% Similarity=0.273 Sum_probs=36.2
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHH
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAH 189 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~ 189 (231)
.+-|||+||+.++.-.||+..+..-+.+ -.+|... +|.+ -||+.|.+...
T Consensus 330 ~~di~~~nl~rd~rv~dlk~~lr~~~~~-pm~iswk--g~~~-----k~flh~~~~~~ 379 (396)
T KOG4410|consen 330 KTDIKLTNLSRDIRVKDLKSELRKRECT-PMSISWK--GHFG-----KCFLHFGNRKG 379 (396)
T ss_pred ccceeeccCccccchHHHHHHHHhcCCC-ceeEeee--cCCc-----ceeEecCCccC
Confidence 3569999999999999999988887643 2233332 3333 69999998654
No 157
>PF14893 PNMA: PNMA
Probab=52.02 E-value=12 Score=34.52 Aligned_cols=50 Identities=22% Similarity=0.527 Sum_probs=31.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHh----hcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCC
Q 026915 132 SSTLFVEGLPSDCSRREVAHI----FRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVS 186 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~l----F~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~ 186 (231)
-+.|.|.+||.+|++.||++. +.+.|.+.-.--+..+.-... -++|+|..
T Consensus 18 ~r~lLv~giP~dc~~~ei~e~l~~~l~plg~yrvl~~~f~~~~~~~-----aalve~~e 71 (331)
T PF14893_consen 18 QRALLVLGIPEDCEEAEIEEALQAALSPLGRYRVLGKMFRREENAK-----AALVEFAE 71 (331)
T ss_pred hhhheeecCCCCCCHHHHHHHHHHhhcccccceehhhHhhhhcccc-----eeeeeccc
Confidence 578999999999999998876 456665532211111111111 58888865
No 158
>KOG4454 consensus RNA binding protein (RRM superfamily) [General function prediction only]
Probab=50.16 E-value=4.6 Score=35.34 Aligned_cols=70 Identities=19% Similarity=0.179 Sum_probs=57.1
Q ss_pred CCEEEEcC----CCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCC
Q 026915 132 SSTLFVEG----LPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAK 205 (231)
Q Consensus 132 ~~tLfVgn----Lp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~ 205 (231)
..+++.++ |...++++.+.++|++-+.+..+++..+.. |+.+-+.||.+......-.++...++..+...
T Consensus 80 q~~~r~G~shapld~r~~~ei~~~v~s~a~p~~~~R~~~~~d----~rnrn~~~~~~qr~~~~P~~~~~y~~l~~~~~ 153 (267)
T KOG4454|consen 80 QRTLRCGNSHAPLDERVTEEILYEVFSQAGPIEGVRIPTDND----GRNRNFGFVTYQRLCAVPFALDLYQGLELFQK 153 (267)
T ss_pred hcccccCCCcchhhhhcchhhheeeecccCCCCCcccccccc----CCccCccchhhhhhhcCcHHhhhhcccCcCCC
Confidence 46778888 888999999999999999999999888864 33344899999988888888888887775543
No 159
>COG5638 Uncharacterized conserved protein [Function unknown]
Probab=49.44 E-value=59 Score=31.14 Aligned_cols=84 Identities=13% Similarity=0.173 Sum_probs=57.1
Q ss_pred CCCEEEEcCCCCC-CCHHHHHHhhcCC----CCeEEEEEeeCC-CCCCC------C------------------------
Q 026915 131 ASSTLFVEGLPSD-CSRREVAHIFRPF----VGYKEVRLVSKE-SRHPG------G------------------------ 174 (231)
Q Consensus 131 ~~~tLfVgnLp~~-vte~eL~~lF~~f----G~i~~v~l~~~k-~~~~~------G------------------------ 174 (231)
+++.|-|-|++|+ +...+|..+|+.| |.|..|.|.... .+.+- |
T Consensus 145 ~tkrLAvVnmDWd~v~a~DLf~~fsSf~P~ggkl~kV~iypsefGkeRm~~e~vqGpprdif~~~d~~~ssqk~~~dn~~ 224 (622)
T COG5638 145 PTKRLAVVNMDWDRVDAKDLFKIFSSFLPYGGKLSKVKIYPSEFGKERMAAEHVQGPPRDIFTPADNQPSSQKFGDDNVF 224 (622)
T ss_pred cccceeEeecccccchHHHHHHHHHhhCCCCCccceeEechhhhhHHHHhHhhccCCchhhccccccCcchhccCCccch
Confidence 4788999999997 8888999998876 345556654322 00000 1
Q ss_pred --Cc-----------------------------ceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEEEee
Q 026915 175 --DP-----------------------------LILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRIDVT 214 (231)
Q Consensus 175 --~~-----------------------------kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~a 214 (231)
+. --||.|++.+...+.....+.+|..+......+-+.|-
T Consensus 225 sd~d~g~d~~~Egd~g~e~d~~~lrqyqlerlryYyAvvec~d~~tsK~iY~~CDG~Eye~san~~DLRfv 295 (622)
T COG5638 225 SDRDAGEDALIEGDRGNEFDMVKLRQYQLERLRYYYAVVECEDIETSKNIYSACDGVEYENSANVLDLRFV 295 (622)
T ss_pred hhhhcchhhhhhcccccchhHHHHHHHHhhhheeEEEEEEeccchhhHHHHhccCccccccccceeeeeec
Confidence 01 12689999999999998999999887654334555554
No 160
>KOG4483 consensus Uncharacterized conserved protein [Function unknown]
Probab=45.96 E-value=36 Score=32.41 Aligned_cols=55 Identities=16% Similarity=0.290 Sum_probs=45.8
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCe-EEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGY-KEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i-~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~ 196 (231)
...|=|-++|.....+||-.+|+.|++- -+|+.+-+. .+|-.|.+...|..||-.
T Consensus 391 pHVlEIydfp~efkteDll~~f~~yq~kgfdIkWvDdt----------halaVFss~~~AaeaLt~ 446 (528)
T KOG4483|consen 391 PHVLEIYDFPDEFKTEDLLKAFETYQNKGFDIKWVDDT----------HALAVFSSVNRAAEALTL 446 (528)
T ss_pred cceeEeccCchhhccHHHHHHHHHhhcCCceeEEeecc----------eeEEeecchHHHHHHhhc
Confidence 3578899999999999999999999853 356666664 799999999999999854
No 161
>KOG2187 consensus tRNA uracil-5-methyltransferase and related tRNA-modifying enzymes [Translation, ribosomal structure and biogenesis]
Probab=35.90 E-value=34 Score=33.51 Aligned_cols=39 Identities=18% Similarity=0.319 Sum_probs=32.6
Q ss_pred EEEEEeCCHHHHHHHHHHhcCceecCCcccEEEEeecCCCC
Q 026915 179 LCFVDFVSPAHAATAMDALQVKSCCAKSVPIRIDVTGNLTG 219 (231)
Q Consensus 179 ~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V~~ak~~~~ 219 (231)
++++.|++...+.+|+..++|....+. .++++-+....+
T Consensus 65 ~~~~~~et~~~~~ka~~~v~g~~~k~~--~~~~~~~~~~~~ 103 (534)
T KOG2187|consen 65 YAYVTFETPSDAGKAINLVDGLLYKGF--ILRVQLGATEVG 103 (534)
T ss_pred ceEEEEeccchhhhHHHHHhhhhhhcc--hhhhhhcccccc
Confidence 899999999999999999999987765 677776665443
No 162
>PF15513 DUF4651: Domain of unknown function (DUF4651)
Probab=31.23 E-value=87 Score=21.86 Aligned_cols=20 Identities=10% Similarity=0.155 Sum_probs=15.5
Q ss_pred HHHHHhhcCCCCeEEEEEee
Q 026915 147 REVAHIFRPFVGYKEVRLVS 166 (231)
Q Consensus 147 ~eL~~lF~~fG~i~~v~l~~ 166 (231)
.+|++.|+..|.|.-+.+-.
T Consensus 9 ~~iR~~fs~lG~I~vLYvn~ 28 (62)
T PF15513_consen 9 AEIRQFFSQLGEIAVLYVNP 28 (62)
T ss_pred HHHHHHHHhcCcEEEEEEcc
Confidence 57999999999997555443
No 163
>PF07292 NID: Nmi/IFP 35 domain (NID); InterPro: IPR009909 This entry represents a domain of approximately 90 residues that is tandemly repeated within interferon-induced 35 kDa protein (IFP 35) and the homologous N-myc-interactor (Nmi). This domain mediates Nmi-Nmi protein interactions and subcellular localisation [].
Probab=29.84 E-value=33 Score=25.54 Aligned_cols=22 Identities=23% Similarity=0.445 Sum_probs=19.5
Q ss_pred CCEEEEcCCCCCCCHHHHHHhh
Q 026915 132 SSTLFVEGLPSDCSRREVAHIF 153 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF 153 (231)
.++|.|.|||....+++|++..
T Consensus 52 ~rtVlvsgip~~l~ee~l~D~L 73 (88)
T PF07292_consen 52 KRTVLVSGIPDVLDEEELRDKL 73 (88)
T ss_pred CCEEEEeCCCCCCChhhheeeE
Confidence 6899999999999999998743
No 164
>PF11411 DNA_ligase_IV: DNA ligase IV; InterPro: IPR021536 DNA ligase IV along with Xrcc4 functions in DNA non-homologous end joining. This process is required to mend double-strand breaks. Upon ligase binding to an Xrcc4 dimer, the helical tails unwind leading to a flat interaction surface []. ; GO: 0003910 DNA ligase (ATP) activity; PDB: 3II6_Y 2E2W_A 1IK9_C.
Probab=29.16 E-value=35 Score=21.24 Aligned_cols=17 Identities=12% Similarity=0.296 Sum_probs=10.5
Q ss_pred CCCCHHHHHHhhcCCCC
Q 026915 142 SDCSRREVAHIFRPFVG 158 (231)
Q Consensus 142 ~~vte~eL~~lF~~fG~ 158 (231)
.++++++|+++|.+...
T Consensus 19 ~Dtd~~~Lk~vF~~i~~ 35 (36)
T PF11411_consen 19 VDTDEDQLKEVFNRIKK 35 (36)
T ss_dssp S---HHHHHHHHHCS--
T ss_pred ccCCHHHHHHHHHHhcc
Confidence 36889999999988653
No 165
>PRK14548 50S ribosomal protein L23P; Provisional
Probab=26.39 E-value=1.4e+02 Score=21.94 Aligned_cols=55 Identities=5% Similarity=0.072 Sum_probs=37.4
Q ss_pred EEcCCCCCCCHHHHHHhhcCC-C-CeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHH
Q 026915 136 FVEGLPSDCSRREVAHIFRPF-V-GYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDA 196 (231)
Q Consensus 136 fVgnLp~~vte~eL~~lF~~f-G-~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~ 196 (231)
|+=-.+.+.+..+|+..++.+ + .|.+|+...-+.+.. =|||.+..-..|......
T Consensus 24 y~F~V~~~anK~eIK~AvE~lf~VkV~~VnT~~~~~~~K------KA~V~L~~g~~A~~va~k 80 (84)
T PRK14548 24 LTFIVDRRATKPDIKRAVEELFDVKVEKVNTLITPKGEK------KAYVKLAEEYDAEEIASR 80 (84)
T ss_pred EEEEECCCCCHHHHHHHHHHHhCCceEEEEeEEcCCCcE------EEEEEeCCCCcHHHHHHh
Confidence 333567888999988887764 3 566776665542211 499999998888766543
No 166
>KOG4365 consensus Uncharacterized conserved protein [Function unknown]
Probab=23.34 E-value=16 Score=35.10 Aligned_cols=79 Identities=8% Similarity=-0.078 Sum_probs=55.7
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceecCCcccEEE
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCCAKSVPIRI 211 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~g~~~~L~V 211 (231)
+.+.|+..||...+++++.-+|..||-|..+.+....+ +|.-+..+||+-.. +.|..||+.+.=..+.+. .+|+
T Consensus 3 s~~~~l~d~~~~~~~~~~~~~~~d~~~i~~~d~~~~~~---~~~~~v~~f~~~~~-~~~~~~i~~~k~q~~~~~--~~r~ 76 (572)
T KOG4365|consen 3 SMKKSLKDSVASNNKDQNSMKHEDPSIISMEDGSPYVN---GSLGEVTPFQHAKK-ANGPNYIQPQKRQTTFES--QDRK 76 (572)
T ss_pred chhhhHhhcccccccchhhhhccCCcceeeccCCcccc---CCcceeeeeeeeec-cCcccccCHHHHhhhhhh--hhhh
Confidence 45678889999999999999999999887665544432 24445578887654 566777766655555554 6777
Q ss_pred EeecC
Q 026915 212 DVTGN 216 (231)
Q Consensus 212 ~~ak~ 216 (231)
..+..
T Consensus 77 ~~~~~ 81 (572)
T KOG4365|consen 77 AVSPS 81 (572)
T ss_pred hcCch
Confidence 77654
No 167
>PF00403 HMA: Heavy-metal-associated domain; InterPro: IPR006121 Proteins that transport heavy metals in micro-organisms and mammals share similarities in their sequences and structures. These proteins provide an important focus for research, some being involved in bacterial resistance to toxic metals, such as lead and cadmium, while others are involved in inherited human syndromes, such as Wilson's and Menke's diseases []. A conserved domain has been found in a number of these heavy metal transport or detoxification proteins []. The domain, which has been termed Heavy-Metal-Associated (HMA), contains two conserved cysteines that are probably involved in metal binding. Structure solution of the fourth HMA domain of the Menke's copper transporting ATPase shows a well-defined structure comprising a four-stranded antiparallel beta-sheet and two alpha helices packed in an alpha-beta sandwich fold []. This fold is common to other domains and is classified as "ferredoxin-like".; GO: 0046872 metal ion binding, 0030001 metal ion transport; PDB: 2VOY_A 1P6T_A 1KQK_A 2RML_A 1JWW_A 3K7R_F 1FES_A 1CC8_A 1FD8_A 2GGP_A ....
Probab=21.78 E-value=2.4e+02 Score=18.30 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=40.5
Q ss_pred EEEEcCCCCCCCHHHHHHhhcCCCCeEEEEEeeCCCCCCCCCcceEEEEEeCCH----HHHHHHHHH
Q 026915 134 TLFVEGLPSDCSRREVAHIFRPFVGYKEVRLVSKESRHPGGDPLILCFVDFVSP----AHAATAMDA 196 (231)
Q Consensus 134 tLfVgnLp~~vte~eL~~lF~~fG~i~~v~l~~~k~~~~~G~~kg~aFVeF~~~----~~A~~Al~~ 196 (231)
||.|.|+.-.--...++..+...-+|.++.+-... + -.-|+|... ++..++|+.
T Consensus 1 t~~v~~m~C~~C~~~v~~~l~~~~GV~~v~vd~~~-----~----~v~v~~~~~~~~~~~i~~~i~~ 58 (62)
T PF00403_consen 1 TFKVPGMTCEGCAKKVEKALSKLPGVKSVKVDLET-----K----TVTVTYDPDKTSIEKIIEAIEK 58 (62)
T ss_dssp EEEEESTTSHHHHHHHHHHHHTSTTEEEEEEETTT-----T----EEEEEESTTTSCHHHHHHHHHH
T ss_pred CEEECCcccHHHHHHHHHHHhcCCCCcEEEEECCC-----C----EEEEEEecCCCCHHHHHHHHHH
Confidence 57788888887888899999999999988876664 2 678888755 444555543
No 168
>KOG1295 consensus Nonsense-mediated decay protein Upf3 [RNA processing and modification]
Probab=20.78 E-value=1.3e+02 Score=28.33 Aligned_cols=70 Identities=13% Similarity=0.190 Sum_probs=47.0
Q ss_pred CCEEEEcCCCCCCCHHHHHHhhcCCCCeEE-EEEe-eCCCCCCCCCcceEEEEEeCCHHHHHHHHHHhcCceec
Q 026915 132 SSTLFVEGLPSDCSRREVAHIFRPFVGYKE-VRLV-SKESRHPGGDPLILCFVDFVSPAHAATAMDALQVKSCC 203 (231)
Q Consensus 132 ~~tLfVgnLp~~vte~eL~~lF~~fG~i~~-v~l~-~~k~~~~~G~~kg~aFVeF~~~~~A~~Al~~L~G~~l~ 203 (231)
-.++.|.+||...++++|.+-..+|-.=.. ..+. .+.+..+ .-.+.++|.|...++...-...++|+.+.
T Consensus 7 ~~Kvv~rrlpp~l~~~~~~eqi~p~~~~v~~~~F~~a~~s~~~--~~ysrayinFk~~~dv~ef~~~f~g~ifl 78 (376)
T KOG1295|consen 7 KVKVVVRRLPPKLTEEQLLEQINPFPEHVNWEFFAKADESLRN--HKYSRAYINFKNPEDVEEFRRRFDGYIFL 78 (376)
T ss_pred ceeeeeecCCCcccHHHHhhhcCCCccccchheeccccccchh--hhhhhhhhccccHHHHHHHHhhCCceEEe
Confidence 478889999999999998887777543111 1112 1111000 01227999999999988888889998854
Done!